HHsearch alignment for GI: 254780852 and conserved domain: pfam00507

>pfam00507 Oxidored_q4 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3.
Probab=100.00  E-value=7.8e-39  Score=223.98  Aligned_cols=100  Identities=51%  Similarity=1.094  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHCCCCCCH-HHHCHHHHHCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             9999999999715678983-241744431300043476652479999999999875999997999996024389999999
Q gi|254780852|r   21 IVIVLMISPFIVAFKSPDP-EKLSTYECGFDPFDDARVKFDIRFCLVSVLFVIFDLEIAFLFPWAVYFKQITWLGFGSMM   99 (121)
Q Consensus        21 ~~~~~~~~s~~l~~~~~~~-~K~s~yECGf~p~~~~~~~Fsi~fyliallFliFDvEiv~l~Pw~~~~~~~~~~~~~~~~   99 (121)
T Consensus         2 i~~i~~~l~~~l~~~~~~~~eK~s~yECGf~p~~~~r~~Fsi~fyliailFliFDvEiv~l~P~~~~~~~~~~~~~~~~~   81 (102)
T pfam00507         2 LSLILLLLSFLLSPKKPSDREKLSPYECGFDPLGKARLPFSLRFFLIAILFLIFDVEIILLLPWAVVFNGLGFLSFVEMF   81 (102)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_conf             98899999999858999951107881779599887777535899999999999999999999999999744099999999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCC
Q ss_conf             999999999999998357578
Q gi|254780852|r  100 VFLGILTVGFIYEWKKGALEW  120 (121)
Q Consensus       100 ~F~~iL~~gl~yew~~G~L~W  120 (121)
T Consensus        82 ~Fl~iL~~gl~yew~~G~L~W  102 (102)
T pfam00507        82 LFLLILLLGLLYEWKKGALDW  102 (102)
T ss_pred             HHHHHHHHHHHHHHHCCCCCC
T ss_conf             999999999999998186789