HHsearch alignment for GI: 254780852 and conserved domain: pfam00507
>pfam00507 Oxidored_q4 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3.
Probab=100.00 E-value=7.8e-39 Score=223.98 Aligned_cols=100 Identities=51% Similarity=1.094 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHCHHHHHCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 9999999999715678983-241744431300043476652479999999999875999997999996024389999999
Q gi|254780852|r 21 IVIVLMISPFIVAFKSPDP-EKLSTYECGFDPFDDARVKFDIRFCLVSVLFVIFDLEIAFLFPWAVYFKQITWLGFGSMM 99 (121)
Q Consensus 21 ~~~~~~~~s~~l~~~~~~~-~K~s~yECGf~p~~~~~~~Fsi~fyliallFliFDvEiv~l~Pw~~~~~~~~~~~~~~~~ 99 (121)
T Consensus 2 i~~i~~~l~~~l~~~~~~~~eK~s~yECGf~p~~~~r~~Fsi~fyliailFliFDvEiv~l~P~~~~~~~~~~~~~~~~~ 81 (102)
T pfam00507 2 LSLILLLLSFLLSPKKPSDREKLSPYECGFDPLGKARLPFSLRFFLIAILFLIFDVEIILLLPWAVVFNGLGFLSFVEMF 81 (102)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_conf 98899999999858999951107881779599887777535899999999999999999999999999744099999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCC
Q ss_conf 999999999999998357578
Q gi|254780852|r 100 VFLGILTVGFIYEWKKGALEW 120 (121)
Q Consensus 100 ~F~~iL~~gl~yew~~G~L~W 120 (121)
T Consensus 82 ~Fl~iL~~gl~yew~~G~L~W 102 (102)
T pfam00507 82 LFLLILLLGLLYEWKKGALDW 102 (102)
T ss_pred HHHHHHHHHHHHHHHCCCCCC
T ss_conf 999999999999998186789