Query gi|254780852|ref|YP_003065265.1| NADH dehydrogenase subunit A [Candidatus Liberibacter asiaticus str. psy62] Match_columns 121 No_of_seqs 117 out of 2581 Neff 6.3 Searched_HMMs 33803 Date Wed Jun 1 17:37:24 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780852.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3fy6_A Integron cassette prot 30.1 34 0.00099 15.3 2.2 13 107-119 82-94 (117) 2 >2k9p_A Pheromone alpha factor 21.3 58 0.0017 14.1 5.4 36 5-40 15-50 (80) 3 >2eou_A Zinc finger protein 47 8.7 67 0.002 13.8 -0.5 5 44-48 40-44 (44) 4 >1vly_A SPOT PR51, unknown pro 8.7 1.2E+02 0.0036 12.4 0.8 11 40-50 21-31 (140) 5 >1paa_A Yeast transcription fa 8.6 96 0.0028 12.9 0.2 14 43-56 1-14 (30) 6 >1z1y_A Ookinete surface prote 7.4 84 0.0025 13.2 -0.5 14 35-48 13-26 (46) 7 >1w9i_A Myosin II heavy chain; 7.1 99 0.0029 12.9 -0.3 13 36-48 38-50 (81) 8 >1pj5_A N,N-dimethylglycine ox 6.4 1.6E+02 0.0047 11.8 0.5 11 40-50 22-32 (144) 9 >2qiz_A Ubiquitin conjugation 5.6 2E+02 0.0059 11.3 1.1 32 20-51 10-41 (128) 10 >2k5c_A Uncharacterized protei 5.3 2.1E+02 0.0062 11.2 0.6 7 115-121 82-88 (95) No 1 >>3fy6_A Integron cassette protein; novel, oyster POND, woodshole,USA, unknown function, structural genomics, PSI-2, protein structure initiative; 2.10A {Vibrio cholerae} (A:1-117) Probab=30.06 E-value=34 Score=15.34 Aligned_cols=13 Identities=46% Similarity=0.831 Sum_probs=9.6 Q ss_pred HHHHHHHHHCCCC Q ss_conf 9999999835757 Q gi|254780852|r 107 VGFIYEWKKGALE 119 (121) Q Consensus 107 ~gl~yew~~G~L~ 119 (121) ---..|||||+|| T Consensus 82 qhawlewrkgald 94 (117) T 3fy6_A 82 QHAWLEWRKGALD 94 (117) T ss_dssp HHHHHHHHTTSSC T ss_pred HHHHHHHHHCCCC T ss_conf 9999999843665 No 2 >>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G- protein coupled receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae} (A:) Probab=21.33 E-value=58 Score=14.10 Aligned_cols=36 Identities=14% Similarity=0.231 Sum_probs=27.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH Q ss_conf 653799999999999999999999997156789832 Q gi|254780852|r 5 LTSYAPILVFMAIASAIVIVLMISPFIVAFKSPDPE 40 (121) Q Consensus 5 ~~~y~~ili~~~~~~~~~~~~~~~s~~l~~~~~~~~ 40 (121) ...-....++..+.++.+..++.+.|+++++++.|. T Consensus 15 v~~~~~~aIv~GvriGa~~l~liilw~isk~kkTPI 50 (80) T 2k9p_A 15 VNSTVTQAILFGVRSGAAALTLIVVWITSRSRKTPI 50 (80) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCCCH T ss_pred HHHHHHEEHEEHHHHHHHHHHHHHHHHHHCCCCCCE T ss_conf 972423001001268899999999999963677988 No 3 >>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=8.69 E-value=67 Score=13.76 Aligned_cols=5 Identities=20% Similarity=0.182 Sum_probs=0.0 Q ss_pred HHHHH Q ss_conf 44431 Q gi|254780852|r 44 TYECG 48 (121) Q Consensus 44 ~yECG 48 (121) ||+|| T Consensus 40 p~~Cg 44 (44) T 2eou_A 40 GPSSG 44 (44) T ss_dssp CCCCC T ss_pred CCCCC T ss_conf 98887 No 4 >>1vly_A SPOT PR51, unknown protein from 2D-PAGE; 1789265, B2898, unknown protein from 2D-PAGE (SPOT PR51), structural genomics, JCSG; HET: MSE; 1.30A {Escherichia coli} (A:199-338) Probab=8.66 E-value=1.2e+02 Score=12.38 Aligned_cols=11 Identities=0% Similarity=0.066 Sum_probs=0.0 Q ss_pred HHHCHHHHHCH Q ss_conf 24174443130 Q gi|254780852|r 40 EKLSTYECGFD 50 (121) Q Consensus 40 ~K~s~yECGf~ 50 (121) ++.+|+|||.+ T Consensus 21 ~~~~P~E~gl~ 31 (140) T 1vly_A 21 GQFIPQATNLQ 31 (140) T ss_dssp TSCCGGGGTGG T ss_pred CHHHHHHHHHH T ss_conf 11356777666 No 5 >>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} (A:) Probab=8.61 E-value=96 Score=12.94 Aligned_cols=14 Identities=29% Similarity=0.517 Sum_probs=0.0 Q ss_pred CHHHHHCHHCCCCC Q ss_conf 74443130004347 Q gi|254780852|r 43 STYECGFDPFDDAR 56 (121) Q Consensus 43 s~yECGf~p~~~~~ 56 (121) .||+||+-.-.-+| T Consensus 1 ~Pf~C~~C~R~FaR 14 (30) T 1paa_A 1 XAYACGLCNRAFTR 14 (30) T ss_dssp CCSBCTTTCCBCSS T ss_pred CCCCCCCCCCHHHH T ss_conf 98343534351348 No 6 >>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A (A:52-97) Probab=7.39 E-value=84 Score=13.24 Aligned_cols=14 Identities=43% Similarity=1.224 Sum_probs=0.0 Q ss_pred CCCCHHHHCHHHHH Q ss_conf 78983241744431 Q gi|254780852|r 35 KSPDPEKLSTYECG 48 (121) Q Consensus 35 ~~~~~~K~s~yECG 48 (121) +.|+++..++|.|| T Consensus 13 k~p~~~Q~~tYkC~ 26 (46) T 1z1y_A 13 ENPDPAQVNMYXCG 26 (46) T ss_dssp ECSSTTSSCSEEEE T ss_pred CCCCCCCCCCCCCC T ss_conf 66434666875243 No 7 >>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 2jj9_A* 2jhr_A* 1jwy_A* 1jx2_A* 1fmv_A ... (A:1-81) Probab=7.09 E-value=99 Score=12.87 Aligned_cols=13 Identities=54% Similarity=1.344 Sum_probs=0.0 Q ss_pred CCCHHHHCHHHHH Q ss_conf 8983241744431 Q gi|254780852|r 36 SPDPEKLSTYECG 48 (121) Q Consensus 36 ~~~~~K~s~yECG 48 (121) +|+|....+|||| T Consensus 38 NPDPKeRDty~~a 50 (81) T 1w9i_A 38 NPDPKERDSYECG 50 (81) T ss_dssp CSSTTCTTCCEEE T ss_pred ECCCCCCCEEEEE T ss_conf 6789722507899 No 8 >>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} (A:687-830) Probab=6.39 E-value=1.6e+02 Score=11.80 Aligned_cols=11 Identities=18% Similarity=0.537 Sum_probs=0.0 Q ss_pred HHHCHHHHHCH Q ss_conf 24174443130 Q gi|254780852|r 40 EKLSTYECGFD 50 (121) Q Consensus 40 ~K~s~yECGf~ 50 (121) +..+|+|||.+ T Consensus 22 ~~~~P~e~gL~ 32 (144) T 1pj5_A 22 TEHDPFEAGLG 32 (144) T ss_dssp TTSCTTTTTCG T ss_pred CCCCHHHCCCH T ss_conf 99897896960 No 9 >>2qiz_A Ubiquitin conjugation factor E4; helical hairpin, ligase; 2.56A {Saccharomyces cerevisiae} PDB: 2qj0_A (A:780-907) Probab=5.62 E-value=2e+02 Score=11.27 Aligned_cols=32 Identities=13% Similarity=0.087 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHCHHHHHCHH Q ss_conf 99999999999715678983241744431300 Q gi|254780852|r 20 AIVIVLMISPFIVAFKSPDPEKLSTYECGFDP 51 (121) Q Consensus 20 ~~~~~~~~~s~~l~~~~~~~~K~s~yECGf~p 51 (121) ...+.-+.+..+.+||..+-.-..|=+.||+| T Consensus 10 la~MLny~L~~LvGPk~~~LKVknpekY~F~P 41 (128) T 2qiz_A 10 LASMLNYNLESLVGPKCGELKVKDPQSYSFNP 41 (128) T ss_dssp HHHHHHHHHHHHHSHHHHSCCCSCGGGGTCCH T ss_pred HHHHHHHHHHHHHCCHHHHCCCCCHHHCCCCH T ss_conf 99999999999717405316789888739879 No 10 >>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus} (A:) Probab=5.29 E-value=2.1e+02 Score=11.16 Aligned_cols=7 Identities=43% Similarity=1.555 Sum_probs=0.0 Q ss_pred HCCCCCC Q ss_conf 3575789 Q gi|254780852|r 115 KGALEWD 121 (121) Q Consensus 115 ~G~L~W~ 121 (121) ||+.||| T Consensus 82 kGsIDwe 88 (95) T 2k5c_A 82 KGGIDWE 88 (95) T ss_dssp SSSCBTT T ss_pred CCCCCCC T ss_conf 6775644 Done!