Query gi|254780852|ref|YP_003065265.1| NADH dehydrogenase subunit A [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 121
No_of_seqs 117 out of 2581
Neff 6.3
Searched_HMMs 23785
Date Tue May 31 22:08:53 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780852.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fy6_A Integron cassette prote 28.5 26 0.0011 15.1 2.2 13 107-119 82-94 (126)
2 2k9p_A Pheromone alpha factor 25.1 34 0.0014 14.5 5.4 36 5-40 15-50 (80)
3 1w8g_A YGGS, hypothetical UPF0 12.9 31 0.0013 14.7 -0.3 25 34-58 36-60 (234)
4 3cpg_A Uncharacterized protein 8.2 59 0.0025 13.3 -0.2 24 35-58 58-81 (282)
5 1paa_A Yeast transcription fac 8.1 70 0.0029 12.9 0.1 14 43-56 1-14 (30)
6 1sm7_A Recombinant IB pronapin 6.4 87 0.0037 12.4 -0.0 16 39-54 88-103 (109)
7 1ct5_A Protein (yeast hypothet 5.9 88 0.0037 12.3 -0.2 22 37-58 51-72 (256)
8 2jde_A Urokinase-type plasmino 5.3 1.1E+02 0.0048 11.8 0.0 17 38-54 4-20 (276)
9 3mk7_C Cytochrome C oxidase, C 5.3 1.5E+02 0.0062 11.1 7.3 77 5-82 1-77 (311)
10 1s6d_A Albumin 8; all helix, f 4.6 1.5E+02 0.0065 11.0 0.3 13 39-51 86-98 (103)
No 1
>3fy6_A Integron cassette protein; novel, oyster POND, woodshole,USA, unknown function, structural genomics, PSI-2, protein structure initiative; 2.10A {Vibrio cholerae}
Probab=28.54 E-value=26 Score=15.12 Aligned_cols=13 Identities=46% Similarity=0.831 Sum_probs=9.5
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 9999999835757
Q gi|254780852|r 107 VGFIYEWKKGALE 119 (121)
Q Consensus 107 ~gl~yew~~G~L~ 119 (121)
---..|||||+||
T Consensus 82 qhawlewrkgald 94 (126)
T 3fy6_A 82 QHAWLEWRKGALD 94 (126)
T ss_dssp HHHHHHHHTTSSC
T ss_pred HHHHHHHHHCCCC
T ss_conf 9999999843665
No 2
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G- protein coupled receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=25.14 E-value=34 Score=14.51 Aligned_cols=36 Identities=14% Similarity=0.231 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 653799999999999999999999997156789832
Q gi|254780852|r 5 LTSYAPILVFMAIASAIVIVLMISPFIVAFKSPDPE 40 (121)
Q Consensus 5 ~~~y~~ili~~~~~~~~~~~~~~~s~~l~~~~~~~~ 40 (121)
...-....++..+.++.+..++.+.|+++++++.|.
T Consensus 15 v~~~~~~aIv~GvriGaa~l~lii~w~isk~kkTPI 50 (80)
T 2k9p_A 15 VNSTVTQAILFGVRSGAAALTLIVVWITSRSRKTPI 50 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCCCH
T ss_pred HHHHHHEEHEEHHHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 972423001001268899999999999963677988
No 3
>1w8g_A YGGS, hypothetical UPF0001 protein YGGS; structural genomics, hypothetical protein, putative enzyme with PLP-binding domain; HET: PLP ICT; 2.0A {Escherichia coli}
Probab=12.92 E-value=31 Score=14.72 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=18.1
Q ss_pred CCCCCHHHHCHHHHHCHHCCCCCCC
Q ss_conf 6789832417444313000434766
Q gi|254780852|r 34 FKSPDPEKLSTYECGFDPFDDARVK 58 (121)
Q Consensus 34 ~~~~~~~K~s~yECGf~p~~~~~~~ 58 (121)
+..|...-...||||...+|+.|.|
T Consensus 36 K~~~~e~I~~a~~~G~r~fGENrvQ 60 (234)
T 1w8g_A 36 KTKPASAIAEAIDAGQRQFGENYVQ 60 (234)
T ss_dssp TTSCHHHHHHHHHTTCCEEEESSHH
T ss_pred CCCCHHHHHHHHHCCCCCCCCCCHH
T ss_conf 9989999999998699714687418
No 4
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer, structural genomics, PSI-2, protein structure initiative; 1.71A {Bifidobacterium adolescentis ATCC15703}
Probab=8.19 E-value=59 Score=13.27 Aligned_cols=24 Identities=13% Similarity=0.199 Sum_probs=17.5
Q ss_pred CCCCHHHHCHHHHHCHHCCCCCCC
Q ss_conf 789832417444313000434766
Q gi|254780852|r 35 KSPDPEKLSTYECGFDPFDDARVK 58 (121)
Q Consensus 35 ~~~~~~K~s~yECGf~p~~~~~~~ 58 (121)
..+-.+-...||||...+|+.|.|
T Consensus 58 ~~p~e~I~~a~~~G~r~FGENrvQ 81 (282)
T 3cpg_A 58 TRDIGEIMAAIDAGVRMIGENRPQ 81 (282)
T ss_dssp TCCHHHHHHHHHTTCCCEEESCHH
T ss_pred CCCHHHHHHHHHCCCCCCCCCCHH
T ss_conf 989999999998699703687089
No 5
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=8.09 E-value=70 Score=12.86 Aligned_cols=14 Identities=29% Similarity=0.520 Sum_probs=8.8
Q ss_pred CHHHHHCHHCCCCC
Q ss_conf 74443130004347
Q gi|254780852|r 43 STYECGFDPFDDAR 56 (121)
Q Consensus 43 s~yECGf~p~~~~~ 56 (121)
.||+||+-.-.-+|
T Consensus 1 KPf~C~~C~R~FaR 14 (30)
T 1paa_A 1 KAYACGLCNRAFTR 14 (30)
T ss_dssp CCSBCTTTCCBCSS
T ss_pred CCCCCCCCCCHHHH
T ss_conf 98343534351348
No 6
>1sm7_A Recombinant IB pronapin; all alpha-helix, right-handed superhelix, plant protein; NMR {Brassica napus}
Probab=6.45 E-value=87 Score=12.36 Aligned_cols=16 Identities=13% Similarity=0.152 Sum_probs=12.8
Q ss_pred HHHHCHHHHHCHHCCC
Q ss_conf 3241744431300043
Q gi|254780852|r 39 PEKLSTYECGFDPFDD 54 (121)
Q Consensus 39 ~~K~s~yECGf~p~~~ 54 (121)
..|+.|..||.+|++.
T Consensus 88 ~Ak~LP~~C~i~p~~~ 103 (109)
T 1sm7_A 88 IAKNLPNVCNMKQIGT 103 (109)
T ss_dssp TTSSHHHHSCCCSSCS
T ss_pred HHHHCCCCCCCCCCCC
T ss_conf 9985713039798888
No 7
>1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM barrel, pyridoxal-5'-phosphate, selenomethionine, MAD, structural genomics, PSI; HET: PLP; 2.00A {Saccharomyces cerevisiae} SCOP: c.1.6.2 PDB: 1b54_A*
Probab=5.95 E-value=88 Score=12.34 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=11.9
Q ss_pred CCHHHHCHHHHHCHHCCCCCCC
Q ss_conf 9832417444313000434766
Q gi|254780852|r 37 PDPEKLSTYECGFDPFDDARVK 58 (121)
Q Consensus 37 ~~~~K~s~yECGf~p~~~~~~~ 58 (121)
+-.+-...||||...+|+.|.|
T Consensus 51 ~~~~I~~~~~~G~~~fGENrvQ 72 (256)
T 1ct5_A 51 PASDIQILYDHGVREFGENYVQ 72 (256)
T ss_dssp CHHHHHHHHHHTCCEEEECCHH
T ss_pred CHHHHHHHHHCCCCCCCCCHHH
T ss_conf 9999999998699624686599
No 8
>2jde_A Urokinase-type plasminogen activator; plasminogen activation, EGF-like domain, blood coagulation, inhibitor complex, UPA, kringle, zymogen; 2.2A {Homo sapiens} PDB: 2vnt_A*
Probab=5.30 E-value=1.1e+02 Score=11.75 Aligned_cols=17 Identities=18% Similarity=0.548 Sum_probs=10.5
Q ss_pred CHHHHCHHHHHCHHCCC
Q ss_conf 83241744431300043
Q gi|254780852|r 38 DPEKLSTYECGFDPFDD 54 (121)
Q Consensus 38 ~~~K~s~yECGf~p~~~ 54 (121)
.+.-..++|||..|...
T Consensus 4 ~~~~~~~~~CG~~~~~p 20 (276)
T 2jde_A 4 SPPEELKFQCGQKTLRP 20 (276)
T ss_dssp -----------------
T ss_pred CCCCCCCCCCCCCCCCC
T ss_conf 98855777989937899
No 9
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=5.26 E-value=1.5e+02 Score=11.15 Aligned_cols=77 Identities=12% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 653799999999999999999999997156789832417444313000434766524799999999998759999979
Q gi|254780852|r 5 LTSYAPILVFMAIASAIVIVLMISPFIVAFKSPDPEKLSTYECGFDPFDDARVKFDIRFCLVSVLFVIFDLEIAFLFP 82 (121)
Q Consensus 5 ~~~y~~ili~~~~~~~~~~~~~~~s~~l~~~~~~~~K~s~yECGf~p~~~~~~~Fsi~fyliallFliFDvEiv~l~P 82 (121)
|+.|+++.+ .++.++....+..+-...+++++..+...+=+--.|-+++-..|.+-=....-..=++|-+=-.++||
T Consensus 1 ~~~fw~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~h~~Dgi~E~~np~P~ww~~~f~~tiv~~~~Y~~~yp 77 (311)
T 3mk7_C 1 MSTFWSGYI-ALLTLGTIVALFWLIFATRKGESAGTTDQTMGHAFDGIEEYDNPLPRWWFLLFIGTLVFGILYLVLYP 77 (311)
T ss_dssp CCHHHHHHH-HHHHHHHHHHHHHHHHHTTTTCCSSCCCCCCSCCBTTBCBCCCCCCHHHHHHHHHHHHHHHHHHHHST
T ss_pred CCCHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 975379999-99999999999999999981578887777468877781010389978999999999999999999953
No 10
>1s6d_A Albumin 8; all helix, folded LEAF, right-handed superhelix, disulphide rich, plant protein; NMR {Helianthus annuus} SCOP: a.52.1.3
Probab=4.61 E-value=1.5e+02 Score=11.04 Aligned_cols=13 Identities=15% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHCHHHHHCHH
Q ss_conf 3241744431300
Q gi|254780852|r 39 PEKLSTYECGFDP 51 (121)
Q Consensus 39 ~~K~s~yECGf~p 51 (121)
..|+.|..||.+|
T Consensus 86 ~Ak~LPs~C~i~P 98 (103)
T 1s6d_A 86 MAHNLPIECNLMS 98 (103)
T ss_dssp HHHHHHHHTTSSS
T ss_pred HHHHCHHHCCCCC
T ss_conf 9985737329897
Done!