Query gi|254780852|ref|YP_003065265.1| NADH dehydrogenase subunit A [Candidatus Liberibacter asiaticus str. psy62] Match_columns 121 No_of_seqs 117 out of 2581 Neff 6.3 Searched_HMMs 13730 Date Wed Jun 1 10:45:58 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780852.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d3bz7a1 b.34.3.1 (A:34-79) Myo 38.0 2.8 0.00021 18.9 -0.3 18 36-53 5-22 (46) 2 d2adra2 g.37.1.1 (A:131-161) A 8.4 29 0.0021 13.6 -0.5 10 44-53 1-10 (31) 3 d1rjxb_ b.47.1.2 (B:) Plasmin( 8.0 44 0.0032 12.7 0.3 10 45-54 2-11 (247) 4 d1ct5a_ c.1.6.2 (A:) "Hypothet 7.1 40 0.0029 12.9 -0.2 23 36-58 49-71 (244) 5 g1pnb.1 a.52.1.3 (A:,B:) Napin 5.5 59 0.0043 12.0 -0.1 17 38-54 84-100 (106) 6 d2aqaa1 g.41.16.1 (A:2-58) H/a 5.5 71 0.0052 11.6 0.3 22 38-61 15-36 (57) 7 d1s6da_ a.52.1.3 (A:) Methioni 4.7 88 0.0064 11.1 0.3 15 38-52 85-99 (103) 8 d1x6ea2 g.37.1.1 (A:41-66) Zin 3.2 92 0.0067 11.0 -0.6 4 44-47 2-5 (26) 9 d1fvia2 d.142.2.1 (A:2-189) AT 3.1 99 0.0072 10.8 -0.5 10 39-48 165-174 (188) 10 d1wosa2 d.250.1.1 (A:1-278) Gl 3.1 1.3E+02 0.0096 10.2 0.9 11 40-50 245-255 (278) No 1 >d3bz7a1 b.34.3.1 (A:34-79) Myosin S1 fragment, N-terminal domain {Dictyostelium discoideum [TaxId: 44689]} Probab=37.99 E-value=2.8 Score=18.92 Aligned_cols=18 Identities=39% Similarity=0.794 Sum_probs=12.8 Q ss_pred CCCHHHHCHHHHHCHHCC Q ss_conf 898324174443130004 Q gi|254780852|r 36 SPDPEKLSTYECGFDPFD 53 (121) Q Consensus 36 ~~~~~K~s~yECGf~p~~ 53 (121) +|++.....||||..-.. T Consensus 5 npdpkerdsyecgeivse 22 (46) T d3bz7a1 5 NPDPKERDSYECGEIVSE 22 (46) T ss_dssp CSSTTCTTCCEEEEEEEE T ss_pred CCCCCCCCCCHHCCEEEC T ss_conf 788220353000120210 No 2 >d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Probab=8.39 E-value=29 Score=13.58 Aligned_cols=10 Identities=30% Similarity=0.663 Sum_probs=5.7 Q ss_pred HHHHHCHHCC Q ss_conf 4443130004 Q gi|254780852|r 44 TYECGFDPFD 53 (121) Q Consensus 44 ~yECGf~p~~ 53 (121) ||+||+-.-. T Consensus 1 Pf~C~~C~R~ 10 (31) T d2adra2 1 PYPCGLCNRA 10 (31) T ss_dssp SEECTTTCCE T ss_pred CCCCCCCCCH T ss_conf 9654504351 No 3 >d1rjxb_ b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Probab=8.02 E-value=44 Score=12.65 Aligned_cols=10 Identities=20% Similarity=0.793 Sum_probs=4.2 Q ss_pred HHHHCHHCCC Q ss_conf 4431300043 Q gi|254780852|r 45 YECGFDPFDD 54 (121) Q Consensus 45 yECGf~p~~~ 54 (121) ||||-.+... T Consensus 2 ~~cg~~~~~~ 11 (247) T d1rjxb_ 2 FDCGKPQVEP 11 (247) T ss_dssp CSTTCCSSCC T ss_pred CCCCCCCCCC T ss_conf 8889987677 No 4 >d1ct5a_ c.1.6.2 (A:) "Hypothetical" protein ybl036c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=7.14 E-value=40 Score=12.88 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=15.1 Q ss_pred CCCHHHHCHHHHHCHHCCCCCCC Q ss_conf 89832417444313000434766 Q gi|254780852|r 36 SPDPEKLSTYECGFDPFDDARVK 58 (121) Q Consensus 36 ~~~~~K~s~yECGf~p~~~~~~~ 58 (121) .+...-...|+||...+|+.|.| T Consensus 49 ~~~~~I~~~~~~G~~~fGENrvQ 71 (244) T d1ct5a_ 49 KPASDIQILYDHGVREFGENYVQ 71 (244) T ss_dssp SCHHHHHHHHHHTCCEEEECCHH T ss_pred CCHHHHHHHHHCCCCHHHCCHHH T ss_conf 99999999998498612004045 No 5 >g1pnb.1 a.52.1.3 (A:,B:) Napin BNIb {Rape (Brassica napus) [TaxId: 3708]} Probab=5.54 E-value=59 Score=11.99 Aligned_cols=17 Identities=12% Similarity=0.161 Sum_probs=13.2 Q ss_pred CHHHHCHHHHHCHHCCC Q ss_conf 83241744431300043 Q gi|254780852|r 38 DPEKLSTYECGFDPFDD 54 (121) Q Consensus 38 ~~~K~s~yECGf~p~~~ 54 (121) ...|+.|..||..|++. T Consensus 84 q~A~~LP~~C~i~p~~~ 100 (106) T g1pnb.1 84 QIAKNLPNVCNMKQIGT 100 (106) T ss_dssp HHCCSCSCSSCCTTTCC T ss_pred HHHHHCCCCCCCCCCCC T ss_conf 99985723039899888 No 6 >d2aqaa1 g.41.16.1 (A:2-58) H/aca ribonucleoprotein complex subunit 3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=5.50 E-value=71 Score=11.55 Aligned_cols=22 Identities=14% Similarity=0.113 Sum_probs=15.0 Q ss_pred CHHHHCHHHHHCHHCCCCCCCCCH Q ss_conf 832417444313000434766524 Q gi|254780852|r 38 DPEKLSTYECGFDPFDDARVKFDI 61 (121) Q Consensus 38 ~~~K~s~yECGf~p~~~~~~~Fsi 61 (121) .-.|..| ||-...+.-..+||- T Consensus 15 TLkk~~p--~G~~T~sahPaRFSP 36 (57) T d2aqaa1 15 TLKKVTE--SGEITKSAHPARFSP 36 (57) T ss_dssp CCCCSSC--CCCCCCSSCCCCCCS T ss_pred EEECCCC--CCCCCCCCCCCCCCC T ss_conf 8402388--998125657886786 No 7 >d1s6da_ a.52.1.3 (A:) Methionine-rich 2S protein (albumin 8) {Common sunflower (Helianthus annuus) [TaxId: 4232]} Probab=4.66 E-value=88 Score=11.08 Aligned_cols=15 Identities=13% Similarity=0.120 Sum_probs=11.3 Q ss_pred CHHHHCHHHHHCHHC Q ss_conf 832417444313000 Q gi|254780852|r 38 DPEKLSTYECGFDPF 52 (121) Q Consensus 38 ~~~K~s~yECGf~p~ 52 (121) ...|+.|..||.+|. T Consensus 85 q~Ak~LPs~C~i~P~ 99 (103) T d1s6da_ 85 SMAHNLPIECNLMSQ 99 (103) T ss_dssp HHHHHHHHHTTSSSS T ss_pred HHHHHCHHHCCCCCC T ss_conf 999857373298976 No 8 >d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Probab=3.25 E-value=92 Score=10.99 Aligned_cols=4 Identities=50% Similarity=1.713 Sum_probs=0.0 Q ss_pred HHHH Q ss_conf 4443 Q gi|254780852|r 44 TYEC 47 (121) Q Consensus 44 ~yEC 47 (121) |||| T Consensus 2 Py~C 5 (26) T d1x6ea2 2 PYKC 5 (26) T ss_dssp CEEC T ss_pred CCCC T ss_conf 8248 No 9 >d1fvia2 d.142.2.1 (A:2-189) ATP-dependent DNA ligase, N-terminal domain {Chlorella virus PBCV-1 [TaxId: 10506]} Probab=3.13 E-value=99 Score=10.80 Aligned_cols=10 Identities=20% Similarity=0.368 Sum_probs=0.0 Q ss_pred HHHHCHHHHH Q ss_conf 3241744431 Q gi|254780852|r 39 PEKLSTYECG 48 (121) Q Consensus 39 ~~K~s~yECG 48 (121) +...++|||| T Consensus 165 K~~ds~Y~~g 174 (188) T d1fvia2 165 RKPDGKYKFG 174 (188) T ss_dssp ECTTCCCCSS T ss_pred ECCCCCCCCC T ss_conf 7799965999 No 10 >d1wosa2 d.250.1.1 (A:1-278) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]} Probab=3.09 E-value=1.3e+02 Score=10.15 Aligned_cols=11 Identities=27% Similarity=0.664 Sum_probs=0.0 Q ss_pred HHHCHHHHHCH Q ss_conf 24174443130 Q gi|254780852|r 40 EKLSTYECGFD 50 (121) Q Consensus 40 ~K~s~yECGf~ 50 (121) +..+|+|||.+ T Consensus 245 ~~~~P~E~gl~ 255 (278) T d1wosa2 245 ENTNPFEVGLS 255 (278) T ss_dssp TTSCGGGGTCG T ss_pred CCCCHHHCCCC T ss_conf 99898888972 Done!