HHsearch alignment for GI: 254780853 and conserved domain: CHL00023

>CHL00023 ndhK NADH dehydrogenase subunit K.
Probab=100.00  E-value=0  Score=497.54  Aligned_cols=150  Identities=47%  Similarity=0.912  Sum_probs=145.3

Q ss_pred             HHHCCEEEEEHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCCCCHHHCCEEECCCCCCCCEEEEECCCCHHHHHHHHH
Q ss_conf             41087688559999845612883477523546521356633666786764848706822060799714134556999999
Q gi|254780853|r   33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR  112 (185)
Q Consensus        33 ~~~~~~i~t~~d~l~nW~R~~Slwp~~fg~aCC~iE~~a~~~p~yD~eRfG~~~~~sPRqADvliVtG~vT~km~~~l~~  112 (185)
T Consensus        12 ~~~~nvi~t~ld~~~nWaR~~SLWpl~fgtaCC~IEmma~~~~ryD~eRFG~~~raSPRqADlliVtGtVT~kMa~~l~r   91 (225)
T CHL00023         12 TTSNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVR   91 (225)
T ss_pred             CCCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCEECCCCCCCCEEEEECCCCHHHHHHHHH
T ss_conf             67787798428997545531776504665246898898622664245441101238975023799803161867999999


Q ss_pred             HHHHCCCCCEEEEECCCCCCCCCCC-CCCCEECCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9984686661998535566886347-887220772223223067488768989999999999999964126
Q gi|254780853|r  113 VYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN  182 (185)
Q Consensus       113 ~yeqmpePK~ViA~G~Ca~sGG~f~-~sY~v~~g~d~~iPVDvyVPGCPPrPeail~gl~~L~~ki~~~~~  182 (185)
T Consensus        92 ~YeQMPePK~VIAmGaCA~sGG~F~~dsYsvv~GvD~iIPVDVyIPGCPPrPEAiidaI~kLqkKi~~e~~  162 (225)
T CHL00023         92 LYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAIIDAITKLRKKISREIY  162 (225)
T ss_pred             HHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCEECCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             99857998569985664578874457985011577721451367689886989999999999999976658