HHsearch alignment for GI: 254780853 and conserved domain: CHL00023
>CHL00023 ndhK NADH dehydrogenase subunit K.
Probab=100.00 E-value=0 Score=497.54 Aligned_cols=150 Identities=47% Similarity=0.912 Sum_probs=145.3
Q ss_pred HHHCCEEEEEHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCCCCHHHCCEEECCCCCCCCEEEEECCCCHHHHHHHHH
Q ss_conf 41087688559999845612883477523546521356633666786764848706822060799714134556999999
Q gi|254780853|r 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112 (185)
Q Consensus 33 ~~~~~~i~t~~d~l~nW~R~~Slwp~~fg~aCC~iE~~a~~~p~yD~eRfG~~~~~sPRqADvliVtG~vT~km~~~l~~ 112 (185)
T Consensus 12 ~~~~nvi~t~ld~~~nWaR~~SLWpl~fgtaCC~IEmma~~~~ryD~eRFG~~~raSPRqADlliVtGtVT~kMa~~l~r 91 (225)
T CHL00023 12 TTSNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVR 91 (225)
T ss_pred CCCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCEECCCCCCCCEEEEECCCCHHHHHHHHH
T ss_conf 67787798428997545531776504665246898898622664245441101238975023799803161867999999
Q ss_pred HHHHCCCCCEEEEECCCCCCCCCCC-CCCCEECCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9984686661998535566886347-887220772223223067488768989999999999999964126
Q gi|254780853|r 113 VYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 (185)
Q Consensus 113 ~yeqmpePK~ViA~G~Ca~sGG~f~-~sY~v~~g~d~~iPVDvyVPGCPPrPeail~gl~~L~~ki~~~~~ 182 (185)
T Consensus 92 ~YeQMPePK~VIAmGaCA~sGG~F~~dsYsvv~GvD~iIPVDVyIPGCPPrPEAiidaI~kLqkKi~~e~~ 162 (225)
T CHL00023 92 LYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAIIDAITKLRKKISREIY 162 (225)
T ss_pred HHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCEECCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99857998569985664578874457985011577721451367689886989999999999999976658