HHsearch alignment for GI: 254780853 and conserved domain: PRK10468
>PRK10468 hydrogenase 2 small subunit; Provisional.
Probab=98.84 E-value=1e-08 Score=71.90 Aligned_cols=132 Identities=19% Similarity=0.385 Sum_probs=88.5
Q ss_pred HHHHHHHHHCCCCEEEEEC-CCCCCHHHHHHCCCCCCH---HHCCEEECCC-----CCC--------------CCEEEEE
Q ss_conf 9999845612883477523-546521356633666786---7648487068-----220--------------6079971
Q gi|254780853|r 43 VDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDL---ERFGFAPRAS-----PRQ--------------SDVMIVA 99 (185)
Q Consensus 43 ~d~l~nW~R~~Slwp~~fg-~aCC~iE~~a~~~p~yD~---eRfG~~~~~s-----PRq--------------ADvliVt 99 (185)
T Consensus 38 va~Al~~~~rppVIWL~~~eCTGCSeSlLrs~~P~i~~lild~IsL~YHeTlmaa~G~~Ae~~l~~~~~~~~G~yiLVVE 117 (371)
T PRK10468 38 MAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVD 117 (371)
T ss_pred HHHHHHCCCCCCEEEEECCCCCCCHHHHHCCCCCCHHHHHHHHEEEEECCCCCHHCCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 99999628999879985776788189987637998999965313220023002322299999999999864798599982
Q ss_pred CCCCHHHH---------HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC--CCEECCCCCCC---CCEEECCCCCCCHHH
Q ss_conf 41345569---------99999998468666199853556688634788--72207722232---230674887689899
Q gi|254780853|r 100 GTLTNKMA---------SALRRVYDQMPEPRYVISMGSCANGGGYYHYS--YSVVRGCDRIV---PVDIYVPGCPPTAEA 165 (185)
Q Consensus 100 G~vT~km~---------~~l~~~yeqmpePK~ViA~G~Ca~sGG~f~~s--Y~v~~g~d~~i---PVDvyVPGCPPrPea 165 (185)
T Consensus 118 GsIP~~~~G~yc~igGk~~~e~l~e~A~~A~AVIAvGtCAs~GGIpAA~PNPTgA~gv~~~l~~kPV-INiPGCP~~P~~ 196 (371)
T PRK10468 118 GSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTV-INIPGCPPNPHN 196 (371)
T ss_pred CCCCCCCCCEEEEECCEEHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHCCCCCC-CCCCCCCCCHHH
T ss_conf 7654589962698779329999999872275688886041247844578998764308886489971-046999998016
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254780853|r 166 LIYGILLLQK 175 (185)
Q Consensus 166 il~gl~~L~~ 175 (185)
T Consensus 197 ~~gtl~~~l~ 206 (371)
T PRK10468 197 FLATVAHIIT 206 (371)
T ss_pred HHHHHHHHHH
T ss_conf 9999999995