HHsearch alignment for GI: 254780853 and conserved domain: PRK13292
>PRK13292 trifunctional NADH dehydrogenase I subunit B/C/D; Provisional.
Probab=100.00 E-value=0 Score=487.25 Aligned_cols=145 Identities=53% Similarity=1.031 Sum_probs=141.2
Q ss_pred CCEEEEEHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCCCCHHHCCE-EECCCCCCCCEEEEECCCCHHHHHHHHHHH
Q ss_conf 8768855999984561288347752354652135663366678676484-870682206079971413455699999999
Q gi|254780853|r 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVY 114 (185)
Q Consensus 36 ~~~i~t~~d~l~nW~R~~Slwp~~fg~aCC~iE~~a~~~p~yD~eRfG~-~~~~sPRqADvliVtG~vT~km~~~l~~~y 114 (185)
T Consensus 1 ~~~~~~~~d~~~~w~~k~SlWp~~f~~aCc~vE~~~~~~~~yD~~R~G~e~~~~~pRqadl~iv~Gtvt~Kma~~~~~~y 80 (784)
T PRK13292 1 QNIILASLDDLINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDVSRFGAEVLRGTPREADLMVIAGTVFKKMAPSILRLY 80 (784)
T ss_pred CCEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHH
T ss_conf 95202316877422320552418875157877777501677678884743367996434479993531798899999999
Q ss_pred HHCCCCCEEEEECCCCCCCCCCCCCCCEECCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 8468666199853556688634788722077222322306748876898999999999999996412
Q gi|254780853|r 115 DQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 (185)
Q Consensus 115 eqmpePK~ViA~G~Ca~sGG~f~~sY~v~~g~d~~iPVDvyVPGCPPrPeail~gl~~L~~ki~~~~ 181 (185)
T Consensus 81 eQM~~PK~Vi~mGsC~~~GG~~-~~Y~vv~g~d~i~PVd~~vpGCPP~Pea~l~gi~~lq~kI~~~e 146 (784)
T PRK13292 81 EQMAEPKWVISMGSCANSGGMY-DVYSVVQGVNQILPVDVYIPGCPPRPEAFLQGLMLLQEKIRREE 146 (784)
T ss_pred HHCCCCCEEEEECCCCCCCCCC-CCEEECCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 7489984799844412578876-64354247761356536737988797999999999999985143