HHsearch alignment for GI: 254780853 and conserved domain: PRK13292

>PRK13292 trifunctional NADH dehydrogenase I subunit B/C/D; Provisional.
Probab=100.00  E-value=0  Score=487.25  Aligned_cols=145  Identities=53%  Similarity=1.031  Sum_probs=141.2

Q ss_pred             CCEEEEEHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCCCCHHHCCE-EECCCCCCCCEEEEECCCCHHHHHHHHHHH
Q ss_conf             8768855999984561288347752354652135663366678676484-870682206079971413455699999999
Q gi|254780853|r   36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVY  114 (185)
Q Consensus        36 ~~~i~t~~d~l~nW~R~~Slwp~~fg~aCC~iE~~a~~~p~yD~eRfG~-~~~~sPRqADvliVtG~vT~km~~~l~~~y  114 (185)
T Consensus         1 ~~~~~~~~d~~~~w~~k~SlWp~~f~~aCc~vE~~~~~~~~yD~~R~G~e~~~~~pRqadl~iv~Gtvt~Kma~~~~~~y   80 (784)
T PRK13292          1 QNIILASLDDLINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDVSRFGAEVLRGTPREADLMVIAGTVFKKMAPSILRLY   80 (784)
T ss_pred             CCEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHH
T ss_conf             95202316877422320552418875157877777501677678884743367996434479993531798899999999


Q ss_pred             HHCCCCCEEEEECCCCCCCCCCCCCCCEECCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             8468666199853556688634788722077222322306748876898999999999999996412
Q gi|254780853|r  115 DQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG  181 (185)
Q Consensus       115 eqmpePK~ViA~G~Ca~sGG~f~~sY~v~~g~d~~iPVDvyVPGCPPrPeail~gl~~L~~ki~~~~  181 (185)
T Consensus        81 eQM~~PK~Vi~mGsC~~~GG~~-~~Y~vv~g~d~i~PVd~~vpGCPP~Pea~l~gi~~lq~kI~~~e  146 (784)
T PRK13292         81 EQMAEPKWVISMGSCANSGGMY-DVYSVVQGVNQILPVDVYIPGCPPRPEAFLQGLMLLQEKIRREE  146 (784)
T ss_pred             HHCCCCCEEEEECCCCCCCCCC-CCEEECCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             7489984799844412578876-64354247761356536737988797999999999999985143