HHsearch alignment for GI: 254780853 and conserved domain: pfam01058
>pfam01058 Oxidored_q6 NADH ubiquinone oxidoreductase, 20 Kd subunit.
Probab=99.97 E-value=1.2e-30 Score=200.03 Aligned_cols=111 Identities=39% Similarity=0.697 Sum_probs=101.6
Q ss_pred CCCCHHHHHHCCCCCCH-----HHCCEEECCCCC----CCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 46521356633666786-----764848706822----060799714134556999999998468666199853556688
Q gi|254780853|r 63 ACCAVEMMQASMPRYDL-----ERFGFAPRASPR----QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133 (185)
Q Consensus 63 aCC~iE~~a~~~p~yD~-----eRfG~~~~~sPR----qADvliVtG~vT~km~~~l~~~yeqmpePK~ViA~G~Ca~sG 133 (185)
T Consensus 2 ~GC~~s~~~~~~~~~dil~~~~~~y~~~~~~~~~~~~~~~dillVeG~v~~~~~~~~~~~~e~~~~ak~vIAvG~CA~~G 81 (124)
T pfam01058 2 TGCSISLLALHPPLLDLLDLISLRYHIPLMADPREIPEGADVLLVEGAVTRKPKEALERLYELAPKAKYVIAVGTCAAFG 81 (124)
T ss_pred CCCHHHHHHCCCCHHHHHHHCCHHCCCEECCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCC
T ss_conf 78069997539817778740002308734048787887830899970178887899999998642146389961342568
Q ss_pred CCCC--CCCCE-ECCCCCCCCCEEECCCCCCCHHHHHHHHHHH
Q ss_conf 6347--88722-0772223223067488768989999999999
Q gi|254780853|r 134 GYYH--YSYSV-VRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 (185)
Q Consensus 134 G~f~--~sY~v-~~g~d~~iPVDvyVPGCPPrPeail~gl~~L 173 (185)
T Consensus 82 Gi~~~~~~~~~~~~~~~~~v~VDi~IpGCPp~Pe~i~~~l~~l 124 (124)
T pfam01058 82 GIPAAGNNPSYGVRPVLGVVPVDINIPGCPPHPEWILGTLLAL 124 (124)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 6444468875233463446871599739899999999999869