HHsearch alignment for GI: 254780853 and conserved domain: pfam01058

>pfam01058 Oxidored_q6 NADH ubiquinone oxidoreductase, 20 Kd subunit.
Probab=99.97  E-value=1.2e-30  Score=200.03  Aligned_cols=111  Identities=39%  Similarity=0.697  Sum_probs=101.6

Q ss_pred             CCCCHHHHHHCCCCCCH-----HHCCEEECCCCC----CCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf             46521356633666786-----764848706822----060799714134556999999998468666199853556688
Q gi|254780853|r   63 ACCAVEMMQASMPRYDL-----ERFGFAPRASPR----QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG  133 (185)
Q Consensus        63 aCC~iE~~a~~~p~yD~-----eRfG~~~~~sPR----qADvliVtG~vT~km~~~l~~~yeqmpePK~ViA~G~Ca~sG  133 (185)
T Consensus         2 ~GC~~s~~~~~~~~~dil~~~~~~y~~~~~~~~~~~~~~~dillVeG~v~~~~~~~~~~~~e~~~~ak~vIAvG~CA~~G   81 (124)
T pfam01058         2 TGCSISLLALHPPLLDLLDLISLRYHIPLMADPREIPEGADVLLVEGAVTRKPKEALERLYELAPKAKYVIAVGTCAAFG   81 (124)
T ss_pred             CCCHHHHHHCCCCHHHHHHHCCHHCCCEECCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCC
T ss_conf             78069997539817778740002308734048787887830899970178887899999998642146389961342568


Q ss_pred             CCCC--CCCCE-ECCCCCCCCCEEECCCCCCCHHHHHHHHHHH
Q ss_conf             6347--88722-0772223223067488768989999999999
Q gi|254780853|r  134 GYYH--YSYSV-VRGCDRIVPVDIYVPGCPPTAEALIYGILLL  173 (185)
Q Consensus       134 G~f~--~sY~v-~~g~d~~iPVDvyVPGCPPrPeail~gl~~L  173 (185)
T Consensus        82 Gi~~~~~~~~~~~~~~~~~v~VDi~IpGCPp~Pe~i~~~l~~l  124 (124)
T pfam01058        82 GIPAAGNNPSYGVRPVLGVVPVDINIPGCPPHPEWILGTLLAL  124 (124)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf             6444468875233463446871599739899999999999869