HHsearch alignment of GI: 254780853 and MMDB domain: 1cc1_S_1-198
>1cc1_S (S:1-198) Hydrogenase (small subunit); NI-Fe-Se hydrogenase, oxidoreductase; 2.15A {Desulfovibrio baculatus}
Probab=99.97 E-value=4.1e-32 Score=208.14 Aligned_cols=142 Identities=14% Similarity=0.209 Sum_probs=127.7
Q ss_pred CCEEEEEHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCCCCHHHCCEEECCCCCCC------CEEEEECCCCHHHHHH
Q ss_conf 8768855999984561288347752354652135663366678676484870682206------0799714134556999
Q gi|254780853|r 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS------DVMIVAGTLTNKMASA 109 (185)
Q Consensus 36 ~~~i~t~~d~l~nW~R~~Slwp~~fg~aCC~iE~~a~~~p~yD~eRfG~~~~~sPRqA------DvliVtG~vT~km~~~ 109 (185)
...+...+.+++||....+++ .+..||++|+.....++||.++++++..++|||+ |+++|+|++|.++++.
T Consensus 30 ~~~~~~~l~~~i~~~~~p~l~---~~~g~~~~e~~~~~~~~~d~~~i~ivegaip~~~~~~~~~d~~~v~G~~t~~~~~~ 106 (198)
T 1cc1_S 30 HPRIKEILLDVISLEFHPTVM---ASEGEMALAHMYEIAEKFNGNFFLLVEGAIPTAKEGRYCIVGETLDAKAHHHEVTM 106 (198)
T ss_dssp TTBHHHHHHHTEEEEECTTTC---SCCHHHHHHHHHHHHHHTTTSSEEEEESBEECGGGGTTBEEEC---CCSSSCCEEH
T ss_pred CCCHHHHHHCCEEEEECCHHH---HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCH
T ss_conf 998899973237676421131---22107899999998635678829984367677665412342365565444466319
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCEEC--------CCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999846866619985355668863478872207--------722232230674887689899999999999999641
Q gi|254780853|r 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--------GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 (185)
Q Consensus 110 l~~~yeqmpePK~ViA~G~Ca~sGG~f~~sY~v~~--------g~d~~iPVDvyVPGCPPrPeail~gl~~L~~ki~~~ 180 (185)
+.++|+++|++|+|||+|+||+.||++..+|+..+ ++|++++||+|||||||+|+.|+++|..|.+....+
T Consensus 107 ~e~l~e~~~kak~vVA~GsCA~~GGi~a~~~~~t~~~~~~~~~~~~~~v~vdi~IPGCPp~P~~i~~~l~~ll~~~~~~ 185 (198)
T 1cc1_S 107 MELIRDLAPKSLATVAVGTCSAYGGIPAAEGNVTGSKSVRDFFADEKIEKLLVNVPGCPPHPDWMVGTLVAAWSHVLNP 185 (198)
T ss_dssp HHHHHHHGGGSSEEEEESHHHHHCTGGGSTTCCSCEECHHHHHHHHTCCCCEEEECCSSCCHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 9999998730888999863402379654457877541012104767757841784899999899999999999874145