HHsearch alignment of GI: 254780853 and MMDB domain: 1yqw_A_1-182

>1yqw_A (A:1-182) Periplasmic [NIFE] hydrogenase small subunit; NI-Fe hydrogenase unready state, oxidoreductase; 1.83A {Desulfovibrio fructosovorans} PDB: 3cur_A 3cus_A 3h3x_A 1yrq_A 1frf_S
Probab=99.97  E-value=1.6e-32  Score=210.61  Aligned_cols=133  Identities=17%  Similarity=0.281  Sum_probs=121.7

Q ss_pred             HHHHHHCCCCEEEEECCCCCCHHHHHHCCCCCCHHHCCEE---------------------ECCCCCCCCEEEEECCCCH
Q ss_conf             9845612883477523546521356633666786764848---------------------7068220607997141345
Q gi|254780853|r   46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA---------------------PRASPRQSDVMIVAGTLTN  104 (185)
Q Consensus        46 l~nW~R~~Slwp~~fg~aCC~iE~~a~~~p~yD~eRfG~~---------------------~~~sPRqADvliVtG~vT~  104 (185)
                      +.+|.|.+.+|.-..+.+||.+|++.+..|.+|..++|+.                     ...+|||+|+++|+|.||.
T Consensus         1 m~~~~~~~i~w~~~~~C~GC~~sll~~~~p~~~~~~~~~i~l~~~~~l~~~~g~~~~~~l~~~~~~~~~diliVEGsv~~   80 (182)
T 1yqw_A            1 LTAKHRPSVVWLHNAECTGCTEAAIRTIKPYIDALILDTISLDYQETIMAAAGEAAEAALHQALEGKDGYYLVVEGGLPT   80 (182)
T ss_dssp             --CCCCCEEEEEECBCCSHHHHHHTTCBTTBHHHHHHHTCEEEEETTTCSCCHHHHHHHHHHHHTCTTCEEEEEESBEEC
T ss_pred             CCCCCCCCEEEEECCCCCCHHHHHHCCCCCCHHHHHHCCEEEEECCCCCHHCCHHHHHHHHHHHCCCCCCEEEEECCCCC
T ss_conf             98889995899848837853999971699868999747644875263121102689999998752567708998514556


Q ss_pred             HHHH---------HHHHHHHHCCCCCEEEEECCCCCCCCCCCC--CCCEECCCCCCCCCEE-ECCCCCCCHHHHHHHHHH
Q ss_conf             5699---------999999846866619985355668863478--8722077222322306-748876898999999999
Q gi|254780853|r  105 KMAS---------ALRRVYDQMPEPRYVISMGSCANGGGYYHY--SYSVVRGCDRIVPVDI-YVPGCPPTAEALIYGILL  172 (185)
Q Consensus       105 km~~---------~l~~~yeqmpePK~ViA~G~Ca~sGG~f~~--sY~v~~g~d~~iPVDv-yVPGCPPrPeail~gl~~  172 (185)
                      ++..         .+..+|++++++|+|||+|+||+.||+++.  +|...+|++++++||+ +||||||+||.|+++|..
T Consensus        81 ~~~~~~~~~~~~~~~e~v~~~~~~ak~vVA~GtCA~~GGi~a~~~~~t~~~~v~~~i~vdvi~IpGCPp~p~~i~~~l~~  160 (182)
T 1yqw_A           81 IDGGQWGMVAGHPMIETTKKAAAKAKGIICIGTCSAYGGVQKAKPNPSQAKGVSEALGVKTINIPGCPPNPINFVGAVVH  160 (182)
T ss_dssp             GGGGTTBEETTEEHHHHHHHHHHTCSCEEEESHHHHHCCGGGSTTCTTCEECHHHHHTSCCEEECSSSCCHHHHHHHHHH
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCEEECCCCCCCHHHHHHHHHH
T ss_conf             88853344358459999999863188799973312037965556997766487686187668748999888999999999


Q ss_pred             HHHHHH
Q ss_conf             999996
Q gi|254780853|r  173 LQKKIR  178 (185)
Q Consensus       173 L~~ki~  178 (185)
                      +.++..
T Consensus       161 ll~~~~  166 (182)
T 1yqw_A          161 VLTKGI  166 (182)
T ss_dssp             HHHTCC
T ss_pred             HHHCCC
T ss_conf             982899