HHsearch alignment of GI: 254780853 and MMDB domain: 1yqw_A_1-182
>1yqw_A (A:1-182) Periplasmic [NIFE] hydrogenase small subunit; NI-Fe hydrogenase unready state, oxidoreductase; 1.83A {Desulfovibrio fructosovorans} PDB: 3cur_A 3cus_A 3h3x_A 1yrq_A 1frf_S
Probab=99.97 E-value=1.6e-32 Score=210.61 Aligned_cols=133 Identities=17% Similarity=0.281 Sum_probs=121.7
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHCCCCCCHHHCCEE---------------------ECCCCCCCCEEEEECCCCH
Q ss_conf 9845612883477523546521356633666786764848---------------------7068220607997141345
Q gi|254780853|r 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA---------------------PRASPRQSDVMIVAGTLTN 104 (185)
Q Consensus 46 l~nW~R~~Slwp~~fg~aCC~iE~~a~~~p~yD~eRfG~~---------------------~~~sPRqADvliVtG~vT~ 104 (185)
+.+|.|.+.+|.-..+.+||.+|++.+..|.+|..++|+. ...+|||+|+++|+|.||.
T Consensus 1 m~~~~~~~i~w~~~~~C~GC~~sll~~~~p~~~~~~~~~i~l~~~~~l~~~~g~~~~~~l~~~~~~~~~diliVEGsv~~ 80 (182)
T 1yqw_A 1 LTAKHRPSVVWLHNAECTGCTEAAIRTIKPYIDALILDTISLDYQETIMAAAGEAAEAALHQALEGKDGYYLVVEGGLPT 80 (182)
T ss_dssp --CCCCCEEEEEECBCCSHHHHHHTTCBTTBHHHHHHHTCEEEEETTTCSCCHHHHHHHHHHHHTCTTCEEEEEESBEEC
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHCCCCCCHHHHHHCCEEEEECCCCCHHCCHHHHHHHHHHHCCCCCCEEEEECCCCC
T ss_conf 98889995899848837853999971699868999747644875263121102689999998752567708998514556
Q ss_pred HHHH---------HHHHHHHHCCCCCEEEEECCCCCCCCCCCC--CCCEECCCCCCCCCEE-ECCCCCCCHHHHHHHHHH
Q ss_conf 5699---------999999846866619985355668863478--8722077222322306-748876898999999999
Q gi|254780853|r 105 KMAS---------ALRRVYDQMPEPRYVISMGSCANGGGYYHY--SYSVVRGCDRIVPVDI-YVPGCPPTAEALIYGILL 172 (185)
Q Consensus 105 km~~---------~l~~~yeqmpePK~ViA~G~Ca~sGG~f~~--sY~v~~g~d~~iPVDv-yVPGCPPrPeail~gl~~ 172 (185)
++.. .+..+|++++++|+|||+|+||+.||+++. +|...+|++++++||+ +||||||+||.|+++|..
T Consensus 81 ~~~~~~~~~~~~~~~e~v~~~~~~ak~vVA~GtCA~~GGi~a~~~~~t~~~~v~~~i~vdvi~IpGCPp~p~~i~~~l~~ 160 (182)
T 1yqw_A 81 IDGGQWGMVAGHPMIETTKKAAAKAKGIICIGTCSAYGGVQKAKPNPSQAKGVSEALGVKTINIPGCPPNPINFVGAVVH 160 (182)
T ss_dssp GGGGTTBEETTEEHHHHHHHHHHTCSCEEEESHHHHHCCGGGSTTCTTCEECHHHHHTSCCEEECSSSCCHHHHHHHHHH
T ss_pred CCCCCEEEECCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCEEECCCCCCCHHHHHHHHHH
T ss_conf 88853344358459999999863188799973312037965556997766487686187668748999888999999999
Q ss_pred HHHHHH
Q ss_conf 999996
Q gi|254780853|r 173 LQKKIR 178 (185)
Q Consensus 173 L~~ki~ 178 (185)
+.++..
T Consensus 161 ll~~~~ 166 (182)
T 1yqw_A 161 VLTKGI 166 (182)
T ss_dssp HHHTCC
T ss_pred HHHCCC
T ss_conf 982899