HHsearch results for GI: 254780853 and protein with PDBid: 3i9v_6
>3i9v_6 NADH-quinone oxidoreductase subunit 6; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_6* 3iam_6* 3ias_6* 3m9s_6*
Probab=100.00 E-value=0 Score=460.20 Aligned_cols=160 Identities=54% Similarity=0.985 Sum_probs=153.9
Q ss_pred CCHHHHHHHHHHHHCCEEEEEHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCCCCHHHCCEE-ECCCCCCCCEEEEEC
Q ss_conf 6425777667541087688559999845612883477523546521356633666786764848-706822060799714
Q gi|254780853|r 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAG 100 (185)
Q Consensus 22 i~~~~~~~~~~~~~~~~i~t~~d~l~nW~R~~Slwp~~fg~aCC~iE~~a~~~p~yD~eRfG~~-~~~sPRqADvliVtG 100 (185)
+.+.|++...++..+|++.|++|+++||+|++|+||+|||++||+|||+++.+|+||++|||++ |++||||||+|||+|
T Consensus 3 ~~~~~~~~~~~~~~~~~i~t~~~~~~nw~R~~Slw~~~~g~~cC~iE~~a~~~p~yD~eRfG~~~~~aSPR~ADvllVtG 82 (181)
T 3i9v_6 3 LKDLFERDVQELEREGILFTTLEKLVAWGRSNSLWPATFGLACCAIEMMASTDARNDLARFGSEVFRASPRQADVMIVAG 82 (181)
T ss_dssp ------------CTTSHHHHHHHHHHHHHHTTSCCCEEEECSTHHHHHTTTTTTC----------------CCCCEEEES
T ss_pred CHHHHHHHHHHHHHCCEEEEEHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCEEEECC
T ss_conf 20577889998753786875799998798718975010557763989976149877777732424468998677889717
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCEECCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 13455699999999846866619985355668863478872207722232230674887689899999999999999641
Q gi|254780853|r 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 (185)
Q Consensus 101 ~vT~km~~~l~~~yeqmpePK~ViA~G~Ca~sGG~f~~sY~v~~g~d~~iPVDvyVPGCPPrPeail~gl~~L~~ki~~~ 180 (185)
+||+||+++|+++|||||+||||||+|+||++||+| +||++++|+|++||||+||||||||||+||+||++||+||+++
T Consensus 83 ~vT~km~~~l~~~yeqmp~PK~VIA~GaCa~sGG~f-~sy~vv~gvd~~iPVDv~IPGCPPrPeail~gl~~L~~ki~~~ 161 (181)
T 3i9v_6 83 RLSKKMAPVMRRVWEQMPDPKWVISMGACASSGGMF-NNYAIVQNVDSVVPVDVYVPGCPPRPEALIYAVMQLQKKVRGQ 161 (181)
T ss_dssp CCBTTTHHHHHHHHHSSCSSCCEEEEHHHHHSCTTC-CSTTBCSCGGGTSCCSEEECCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC-CCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 115878999999998488985389855236788635-6775557866647578777898859999999999999998621
Q ss_pred CC
Q ss_conf 26
Q gi|254780853|r 181 GN 182 (185)
Q Consensus 181 ~~ 182 (185)
..
T Consensus 162 ~~ 163 (181)
T 3i9v_6 162 AY 163 (181)
T ss_dssp CB
T ss_pred HH
T ss_conf 10