HHsearch results for GI: 254780853 and protein with PDBid: 3myr_A
>3myr_A Hydrogenase (NIFE) small subunit HYDA; [NIFE] hydrogenase, photosynthetic P sulfur bacterium, iron-sulfur cluster, NI-A state; HET: SF4; 2.10A {Allochromatium vinosum}
Probab=99.81 E-value=3e-21 Score=143.88 Aligned_cols=124 Identities=25% Similarity=0.436 Sum_probs=96.8
Q ss_pred HCCCCEEEEECCCC--CCHHHHHHCCCCCC--HHHC-CEEE-------------------CCCCCCCCEEEEECCCCHHH
Q ss_conf 12883477523546--52135663366678--6764-8487-------------------06822060799714134556
Q gi|254780853|r 51 RTGSLMWMTFGLAC--CAVEMMQASMPRYD--LERF-GFAP-------------------RASPRQSDVMIVAGTLTNKM 106 (185)
Q Consensus 51 R~~Slwp~~fg~aC--C~iE~~a~~~p~yD--~eRf-G~~~-------------------~~sPRqADvliVtG~vT~km 106 (185)
||-++-+++++ +| |.+++..+..|.+| +..+ -+.+ ..++++.|+++|+|.|+.+.
T Consensus 2 ~kp~vvWl~~~-~C~GC~iS~L~~~~p~l~~~l~~~i~l~y~p~l~~~~g~~~~~~l~~~~~~~~~~dilvVEGaI~~~~ 80 (269)
T 3myr_A 2 RRPSVIWLSFQ-ECTGCTESLTRAHAPTLEDLILDFISLDYHHTLQAASGEAAEAARLQAMDENRGQYLVIVDGSIPGPD 80 (269)
T ss_dssp CSCEEEEEECB-CCSHHHHHHHHCCSSCHHHHHHHTCEEEECTTTCSSCHHHHHHHHHHHHHHTTTTCEEEEESBEECTT
T ss_pred CCCEEEEEECC-CCCCHHHHHHCCCCCCHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC
T ss_conf 99839998589-68636999975699989999747655876262002316899999999863367771689751166887
Q ss_pred H----------HHHHHHHHHCCCCCEEEEECCCCCCCCCC--CCCCCEECCCCCCCC--CEEECCCCCCCHHHHHHHHHH
Q ss_conf 9----------99999998468666199853556688634--788722077222322--306748876898999999999
Q gi|254780853|r 107 A----------SALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIVP--VDIYVPGCPPTAEALIYGILL 172 (185)
Q Consensus 107 ~----------~~l~~~yeqmpePK~ViA~G~Ca~sGG~f--~~sY~v~~g~d~~iP--VDvyVPGCPPrPeail~gl~~ 172 (185)
. +.+..+.+.+++.|+|||+|+||+.||+. ..++.-..+++++++ +|++||||||+|+.|+.+|+.
T Consensus 81 ~~~~~~~~~~~~~~e~l~~~~~kak~vVA~GtCA~~GGI~a~~~~~t~~~~~~~~~~~~pvinIpGCPp~P~~i~~~l~~ 160 (269)
T 3myr_A 81 ANPGFSTVAGHSNYSILMETVEHAAAVIAVGTCAAFGGLPQARPNPTGAMSVMDLVRDKPVINVPGCPPIPMVITGVIAH 160 (269)
T ss_dssp SCGGGBEETTEEHHHHHHHHHTTCSEEEEEHHHHHHCHHHHSTTCTTCEECHHHHCCSSCEEEECSSSCCHHHHHHHHHH
T ss_pred CCCCEEEECCCCHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEECCCCCCHHHHHHHHHH
T ss_conf 78625763696689999999730988999842302488654568987665667745789858703999898999999999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780853|r 173 LQK 175 (185)
Q Consensus 173 L~~ 175 (185)
+..
T Consensus 161 ~l~ 163 (269)
T 3myr_A 161 YLV 163 (269)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 985