Query gi|254780853|ref|YP_003065266.1| NADH dehydrogenase subunit B [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 185
No_of_seqs 158 out of 603
Neff 4.3
Searched_HMMs 23785
Date Tue May 31 21:17:42 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780853.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i9v_6 NADH-quinone oxidoreduc 100.0 0 0 460.2 8.9 160 22-182 3-163 (181)
2 1yq9_A Periplasmic [NIFE] hydr 99.8 1.1E-20 4.5E-25 140.6 4.9 121 54-175 8-164 (264)
3 3myr_A Hydrogenase (NIFE) smal 99.8 3E-21 1.2E-25 143.9 1.9 124 51-175 2-163 (269)
4 1yqw_A Periplasmic [NIFE] hydr 99.8 7.1E-21 3E-25 141.7 3.4 125 49-175 4-163 (264)
5 1wui_S Periplasmic [NIFE] hydr 99.8 1.5E-20 6.3E-25 139.8 4.8 123 53-176 8-167 (267)
6 1cc1_S Hydrogenase (small subu 99.7 4.5E-18 1.9E-22 125.3 6.8 126 51-177 6-182 (283)
7 1h2a_S Hydrogenase; SO ligand, 99.7 1.1E-17 4.5E-22 123.1 3.3 133 43-175 48-216 (317)
8 2wpn_A Periplasmic [nifese] hy 99.5 1.8E-14 7.7E-19 104.2 6.3 123 51-176 41-210 (317)
9 3nb0_A Glycogen [starch] synth 64.2 0.37 1.6E-05 26.6 -2.5 61 105-165 621-681 (725)
10 3ca8_A Protein YDCF; two domai 39.9 21 0.00087 16.4 4.7 24 95-118 147-171 (266)
11 1sqs_A Conserved hypothetical 35.1 25 0.001 15.9 3.9 123 56-182 44-182 (242)
12 2z1d_A Hydrogenase expression/ 33.2 26 0.0011 15.8 2.8 26 154-181 223-248 (372)
13 3aek_A Light-independent proto 30.3 18 0.00077 16.7 1.7 49 83-131 73-127 (437)
14 2r47_A Uncharacterized protein 25.1 33 0.0014 15.2 2.2 73 76-157 67-145 (157)
15 1xwd_B Follitropin beta chain; 20.9 33 0.0014 15.2 1.5 36 127-162 30-69 (111)
16 3ikb_A Uncharacterized conserv 20.7 35 0.0015 15.0 1.6 27 106-132 107-134 (198)
17 2xdq_A Light-independent proto 20.7 22 0.00091 16.2 0.6 27 104-131 83-109 (460)
18 3kp1_A D-ornithine aminomutase 20.5 46 0.0019 14.3 6.1 122 42-175 590-734 (763)
No 1
>3i9v_6 NADH-quinone oxidoreductase subunit 6; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_6* 3iam_6* 3ias_6* 3m9s_6*
Probab=100.00 E-value=0 Score=460.20 Aligned_cols=160 Identities=54% Similarity=0.985 Sum_probs=153.9
Q ss_pred CCHHHHHHHHHHHHCCEEEEEHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCCCCHHHCCEE-ECCCCCCCCEEEEEC
Q ss_conf 6425777667541087688559999845612883477523546521356633666786764848-706822060799714
Q gi|254780853|r 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAG 100 (185)
Q Consensus 22 i~~~~~~~~~~~~~~~~i~t~~d~l~nW~R~~Slwp~~fg~aCC~iE~~a~~~p~yD~eRfG~~-~~~sPRqADvliVtG 100 (185)
+.+.|++...++..+|++.|++|+++||+|++|+||+|||++||+|||+++.+|+||++|||++ |++||||||+|||+|
T Consensus 3 ~~~~~~~~~~~~~~~~~i~t~~~~~~nw~R~~Slw~~~~g~~cC~iE~~a~~~p~yD~eRfG~~~~~aSPR~ADvllVtG 82 (181)
T 3i9v_6 3 LKDLFERDVQELEREGILFTTLEKLVAWGRSNSLWPATFGLACCAIEMMASTDARNDLARFGSEVFRASPRQADVMIVAG 82 (181)
T ss_dssp ------------CTTSHHHHHHHHHHHHHHTTSCCCEEEECSTHHHHHTTTTTTC----------------CCCCEEEES
T ss_pred CHHHHHHHHHHHHHCCEEEEEHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCEEEECC
T ss_conf 20577889998753786875799998798718975010557763989976149877777732424468998677889717
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCEECCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 13455699999999846866619985355668863478872207722232230674887689899999999999999641
Q gi|254780853|r 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 (185)
Q Consensus 101 ~vT~km~~~l~~~yeqmpePK~ViA~G~Ca~sGG~f~~sY~v~~g~d~~iPVDvyVPGCPPrPeail~gl~~L~~ki~~~ 180 (185)
+||+||+++|+++|||||+||||||+|+||++||+| +||++++|+|++||||+||||||||||+||+||++||+||+++
T Consensus 83 ~vT~km~~~l~~~yeqmp~PK~VIA~GaCa~sGG~f-~sy~vv~gvd~~iPVDv~IPGCPPrPeail~gl~~L~~ki~~~ 161 (181)
T 3i9v_6 83 RLSKKMAPVMRRVWEQMPDPKWVISMGACASSGGMF-NNYAIVQNVDSVVPVDVYVPGCPPRPEALIYAVMQLQKKVRGQ 161 (181)
T ss_dssp CCBTTTHHHHHHHHHSSCSSCCEEEEHHHHHSCTTC-CSTTBCSCGGGTSCCSEEECCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC-CCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 115878999999998488985389855236788635-6775557866647578777898859999999999999998621
Q ss_pred CC
Q ss_conf 26
Q gi|254780853|r 181 GN 182 (185)
Q Consensus 181 ~~ 182 (185)
..
T Consensus 162 ~~ 163 (181)
T 3i9v_6 162 AY 163 (181)
T ss_dssp CB
T ss_pred HH
T ss_conf 10
No 2
>1yq9_A Periplasmic [NIFE] hydrogenase small subunit; oxidoreductase; 2.35A {Desulfovibrio gigas} SCOP: e.19.1.1 PDB: 2frv_S 1frv_A
Probab=99.81 E-value=1.1e-20 Score=140.60 Aligned_cols=121 Identities=17% Similarity=0.366 Sum_probs=93.6
Q ss_pred CCEEEEECCCC--CCHHHHHHCCCCCC--H-HHCCEEECC----------------CCCCCCEEEEECCCCHHHH-----
Q ss_conf 83477523546--52135663366678--6-764848706----------------8220607997141345569-----
Q gi|254780853|r 54 SLMWMTFGLAC--CAVEMMQASMPRYD--L-ERFGFAPRA----------------SPRQSDVMIVAGTLTNKMA----- 107 (185)
Q Consensus 54 Slwp~~fg~aC--C~iE~~a~~~p~yD--~-eRfG~~~~~----------------sPRqADvliVtG~vT~km~----- 107 (185)
++-+++++ +| |.++++.+..|.+| + +.+-+.+.. .+++.||++|+|.|+.++.
T Consensus 8 ~viWl~~~-~C~GC~iS~L~~~~p~l~~~l~~~i~l~y~p~l~~~~g~~~~~~~~~~~~g~~IlvVEGsI~~~~~g~~~~ 86 (264)
T 1yq9_A 8 SVVYLHNA-ECTGCSESVLRTVDPYVDELILDVISMDYHETLMAGAGHAVEEALHEAIKGDFVCVIEGGIPMGDGGYWGK 86 (264)
T ss_dssp EEEEEECB-CCSHHHHHHHTCTTTTHHHHHHHTCEEEECTTTCSSCTHHHHHHHHHHTTSSEEEEEESBEECGGGSTTBE
T ss_pred CEEEEECC-CCCCHHHHHHCCCCCCHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEE
T ss_conf 47998488-38735999973799869999627667975250203527899999975135774899735665688861453
Q ss_pred ----HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCE------ECCCCCCCCCEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf ----99999998468666199853556688634788722------077222322306748876898999999999999
Q gi|254780853|r 108 ----SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV------VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 (185)
Q Consensus 108 ----~~l~~~yeqmpePK~ViA~G~Ca~sGG~f~~sY~v------~~g~d~~iPVDvyVPGCPPrPeail~gl~~L~~ 175 (185)
+.+..+++.++++|+|||+|+||+.||++...++. ...+++.+++|++||||||+||.|++.|..|..
T Consensus 87 ~~~~~~~e~l~~l~~kak~VVA~GsCA~~GGI~a~~~n~t~~~~~~~~l~~~~~~vi~IPGCPp~p~~i~~~l~~ll~ 164 (264)
T 1yq9_A 87 VGGRNMYDICAEVAPKAKAVIAIGTCATYGGVQAAKPNPTGTVGVNEALGKLGVKAINIAGCPPNPMNFVGTVVHLLT 164 (264)
T ss_dssp ETTEEHHHHHHHHGGGSSEEEEEHHHHHHCCGGGSTTCTTCEECHHHHHGGGTCCCEEECSSSCCHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHHCCCEEEEEECHHHCCCCCCCCCCCCCCEECCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHC
T ss_conf 268039999999974487799960213138854457887675522435665688636717999899999999999973
No 3
>3myr_A Hydrogenase (NIFE) small subunit HYDA; [NIFE] hydrogenase, photosynthetic P sulfur bacterium, iron-sulfur cluster, NI-A state; HET: SF4; 2.10A {Allochromatium vinosum}
Probab=99.81 E-value=3e-21 Score=143.88 Aligned_cols=124 Identities=25% Similarity=0.436 Sum_probs=96.8
Q ss_pred HCCCCEEEEECCCC--CCHHHHHHCCCCCC--HHHC-CEEE-------------------CCCCCCCCEEEEECCCCHHH
Q ss_conf 12883477523546--52135663366678--6764-8487-------------------06822060799714134556
Q gi|254780853|r 51 RTGSLMWMTFGLAC--CAVEMMQASMPRYD--LERF-GFAP-------------------RASPRQSDVMIVAGTLTNKM 106 (185)
Q Consensus 51 R~~Slwp~~fg~aC--C~iE~~a~~~p~yD--~eRf-G~~~-------------------~~sPRqADvliVtG~vT~km 106 (185)
||-++-+++++ +| |.+++..+..|.+| +..+ -+.+ ..++++.|+++|+|.|+.+.
T Consensus 2 ~kp~vvWl~~~-~C~GC~iS~L~~~~p~l~~~l~~~i~l~y~p~l~~~~g~~~~~~l~~~~~~~~~~dilvVEGaI~~~~ 80 (269)
T 3myr_A 2 RRPSVIWLSFQ-ECTGCTESLTRAHAPTLEDLILDFISLDYHHTLQAASGEAAEAARLQAMDENRGQYLVIVDGSIPGPD 80 (269)
T ss_dssp CSCEEEEEECB-CCSHHHHHHHHCCSSCHHHHHHHTCEEEECTTTCSSCHHHHHHHHHHHHHHTTTTCEEEEESBEECTT
T ss_pred CCCEEEEEECC-CCCCHHHHHHCCCCCCHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC
T ss_conf 99839998589-68636999975699989999747655876262002316899999999863367771689751166887
Q ss_pred H----------HHHHHHHHHCCCCCEEEEECCCCCCCCCC--CCCCCEECCCCCCCC--CEEECCCCCCCHHHHHHHHHH
Q ss_conf 9----------99999998468666199853556688634--788722077222322--306748876898999999999
Q gi|254780853|r 107 A----------SALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIVP--VDIYVPGCPPTAEALIYGILL 172 (185)
Q Consensus 107 ~----------~~l~~~yeqmpePK~ViA~G~Ca~sGG~f--~~sY~v~~g~d~~iP--VDvyVPGCPPrPeail~gl~~ 172 (185)
. +.+..+.+.+++.|+|||+|+||+.||+. ..++.-..+++++++ +|++||||||+|+.|+.+|+.
T Consensus 81 ~~~~~~~~~~~~~~e~l~~~~~kak~vVA~GtCA~~GGI~a~~~~~t~~~~~~~~~~~~pvinIpGCPp~P~~i~~~l~~ 160 (269)
T 3myr_A 81 ANPGFSTVAGHSNYSILMETVEHAAAVIAVGTCAAFGGLPQARPNPTGAMSVMDLVRDKPVINVPGCPPIPMVITGVIAH 160 (269)
T ss_dssp SCGGGBEETTEEHHHHHHHHHTTCSEEEEEHHHHHHCHHHHSTTCTTCEECHHHHCCSSCEEEECSSSCCHHHHHHHHHH
T ss_pred CCCCEEEECCCCHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEECCCCCCHHHHHHHHHH
T ss_conf 78625763696689999999730988999842302488654568987665667745789858703999898999999999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780853|r 173 LQK 175 (185)
Q Consensus 173 L~~ 175 (185)
+..
T Consensus 161 ~l~ 163 (269)
T 3myr_A 161 YLV 163 (269)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 985
No 4
>1yqw_A Periplasmic [NIFE] hydrogenase small subunit; NI-Fe hydrogenase unready state, oxidoreductase; 1.83A {Desulfovibrio fructosovorans} PDB: 3cur_A 3cus_A 3h3x_A 1yrq_A 1frf_S
Probab=99.81 E-value=7.1e-21 Score=141.67 Aligned_cols=125 Identities=18% Similarity=0.390 Sum_probs=100.1
Q ss_pred HHHCCCCEEEEECCCC--CCHHHHHHCCCCCC---HHHCCEEECC------------------CCCCCCEEEEECCCCHH
Q ss_conf 5612883477523546--52135663366678---6764848706------------------82206079971413455
Q gi|254780853|r 49 WARTGSLMWMTFGLAC--CAVEMMQASMPRYD---LERFGFAPRA------------------SPRQSDVMIVAGTLTNK 105 (185)
Q Consensus 49 W~R~~Slwp~~fg~aC--C~iE~~a~~~p~yD---~eRfG~~~~~------------------sPRqADvliVtG~vT~k 105 (185)
+.|-+-+| ++++ +| |.++++.+..|-+| ++.+-+.+.. +.++.|+++|+|.|+.+
T Consensus 4 ~~kp~viW-l~~~-~C~GC~~S~ln~~~p~l~~lll~~i~l~y~p~lm~~~g~~~~~~l~~~~~~~~~dilvVEGaI~~~ 81 (264)
T 1yqw_A 4 KHRPSVVW-LHNA-ECTGCTEAAIRTIKPYIDALILDTISLDYQETIMAAAGEAAEAALHQALEGKDGYYLVVEGGLPTI 81 (264)
T ss_dssp CCCCEEEE-EECB-CCSHHHHHHTTCBTTBHHHHHHHTCEEEEETTTCSCCHHHHHHHHHHHHTCTTCEEEEEESBEECG
T ss_pred CCCCCEEE-EECC-CCCCHHHHHHCCCCCCHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf 89995899-8488-387559999747998789997487347532531222027899999986425667279986257558
Q ss_pred HH---------HHHHHHHHHCCCCCEEEEECCCCCCCCCC--CCCCCEECCCCCCCCCEE-ECCCCCCCHHHHHHHHHHH
Q ss_conf 69---------99999998468666199853556688634--788722077222322306-7488768989999999999
Q gi|254780853|r 106 MA---------SALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIVPVDI-YVPGCPPTAEALIYGILLL 173 (185)
Q Consensus 106 m~---------~~l~~~yeqmpePK~ViA~G~Ca~sGG~f--~~sY~v~~g~d~~iPVDv-yVPGCPPrPeail~gl~~L 173 (185)
+. +.+..+++.+++.|+|||+|+||+.||++ ..++.-..|+++++++|+ +||||||+|+.|+..|..|
T Consensus 82 ~~g~~~~~~~~~~~e~l~~l~~~a~~vVA~GtCA~~GGI~a~~~~~t~~~gv~~~i~~~vinIpGCPp~P~~i~~tl~~l 161 (264)
T 1yqw_A 82 DGGQWGMVAGHPMIETTKKAAAKAKGIICIGTCSAYGGVQKAKPNPSQAKGVSEALGVKTINIPGCPPNPINFVGAVVHV 161 (264)
T ss_dssp GGGTTBEETTEEHHHHHHHHHHTCSCEEEESHHHHHCCGGGSTTCTTCEECHHHHHTSCCEEECSSSCCHHHHHHHHHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCEEECCCCCCCHHHHHHHHHHH
T ss_conf 88640220684599999998631887999723111388545579976565766743877676489998899999999999
Q ss_pred HH
Q ss_conf 99
Q gi|254780853|r 174 QK 175 (185)
Q Consensus 174 ~~ 175 (185)
..
T Consensus 162 l~ 163 (264)
T 1yqw_A 162 LT 163 (264)
T ss_dssp HH
T ss_pred HC
T ss_conf 81
No 5
>1wui_S Periplasmic [NIFE] hydrogenase small subunit; high resolution [NIFE]hydrogenase, oxidoreductase, NI-A state, unready state; HET: NFC; 1.04A {Desulfovibrio vulgaris str} SCOP: e.19.1.1 PDB: 1h2r_S 1ubj_S 1ubh_S 1ubl_S 1ubm_S 1ubo_S 1ubr_S 1ubt_S 1ubu_S 1wuh_S* 1ubk_S* 1wuj_S 1wuk_S 1wul_S 1e3d_A*
Probab=99.80 E-value=1.5e-20 Score=139.76 Aligned_cols=123 Identities=20% Similarity=0.318 Sum_probs=93.3
Q ss_pred CCCEEEEEC-CCCCCHHHHHHCCCCCCHHHCC-EEECCC--------------------CCCCCEEEEECCCCHHHH---
Q ss_conf 883477523-5465213566336667867648-487068--------------------220607997141345569---
Q gi|254780853|r 53 GSLMWMTFG-LACCAVEMMQASMPRYDLERFG-FAPRAS--------------------PRQSDVMIVAGTLTNKMA--- 107 (185)
Q Consensus 53 ~Slwp~~fg-~aCC~iE~~a~~~p~yD~eRfG-~~~~~s--------------------PRqADvliVtG~vT~km~--- 107 (185)
+-+| ++++ .+.|.+.++.+..|-.|.-.++ +.++.. .++.||++|+|.|+.++.
T Consensus 8 ~viW-l~~~~C~GCsiS~L~~~~p~l~~~ll~~i~l~yhp~lm~~~g~~~~~~l~~~~~~~~~~IlvVEGsI~~~~~~~~ 86 (267)
T 1wui_S 8 SVVY-LHNAECTGCSESVLRAFEPYIDTLILDTLSLDYHETIMAAAGDAAEAALEQAVNSPHGFIAVVEGGIPTAANGIY 86 (267)
T ss_dssp EEEE-EECBCCSHHHHHHHTCTTTTHHHHHHTTCEEEECTTTCSCCHHHHHHHHHHHHTCTTCEEEEEESBEECGGGGTT
T ss_pred EEEE-EECCCCCCHHHHHHCCCCCCHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCE
T ss_conf 0899-838978865999973699878999758824985351113416889999998752456727984066446878523
Q ss_pred ------HHHHHHHHHCCCCCEEEEECCCCCCCCCCC--CCCCEECCCCCC----CCCEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf ------999999984686661998535566886347--887220772223----22306748876898999999999999
Q gi|254780853|r 108 ------SALRRVYDQMPEPRYVISMGSCANGGGYYH--YSYSVVRGCDRI----VPVDIYVPGCPPTAEALIYGILLLQK 175 (185)
Q Consensus 108 ------~~l~~~yeqmpePK~ViA~G~Ca~sGG~f~--~sY~v~~g~d~~----iPVDvyVPGCPPrPeail~gl~~L~~ 175 (185)
+.+..+.+.++++|+|||+|+||+.||++. .++.-..+++++ +.||++||||||+|+.|+..|..+..
T Consensus 87 ~~~~~~~~~e~~~~~~~~ak~vVA~GtCA~~GGI~a~~~~~t~~~~~~~~l~~~~~~di~IpGCPp~p~~i~~tl~~~l~ 166 (267)
T 1wui_S 87 GKVANHTMLDICSRILPKAQAVIAYGTCATFGGVQAAKPNPTGAKGVNDALKHLGVKAINIAGCPPNPYNLVGTIVYYLK 166 (267)
T ss_dssp BEETTEEHHHHHHHHGGGSSEEEEESHHHHHCCGGGSTTCTTCEECHHHHHGGGTCCCEEECSSSCCHHHHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 44478049999999832598899940200248864567897775223334555789638847999999999999999983
Q ss_pred H
Q ss_conf 9
Q gi|254780853|r 176 K 176 (185)
Q Consensus 176 k 176 (185)
-
T Consensus 167 ~ 167 (267)
T 1wui_S 167 N 167 (267)
T ss_dssp H
T ss_pred C
T ss_conf 6
No 6
>1cc1_S Hydrogenase (small subunit); NI-Fe-Se hydrogenase, oxidoreductase; 2.15A {Desulfomicrobium baculatum} SCOP: e.19.1.1
Probab=99.73 E-value=4.5e-18 Score=125.28 Aligned_cols=126 Identities=19% Similarity=0.457 Sum_probs=96.3
Q ss_pred HCCCCEEEEECCCC--CCHHHHHHCCCCCC--H-HHCCEEEC-------------------CCCCCCCEEEEECCCCHHH
Q ss_conf 12883477523546--52135663366678--6-76484870-------------------6822060799714134556
Q gi|254780853|r 51 RTGSLMWMTFGLAC--CAVEMMQASMPRYD--L-ERFGFAPR-------------------ASPRQSDVMIVAGTLTNKM 106 (185)
Q Consensus 51 R~~Slwp~~fg~aC--C~iE~~a~~~p~yD--~-eRfG~~~~-------------------~sPRqADvliVtG~vT~km 106 (185)
.+-++.+++++ +| |.+.+..+..|..| + +.+-+.+. ..+++.||++|.|.|+.+.
T Consensus 6 ~kp~VvWl~~~-~C~GCsiS~Ln~~~p~l~~~ll~~i~l~yhp~lm~~~g~~a~~~l~~~~~~~~~~dIlvVEGsI~~~~ 84 (283)
T 1cc1_S 6 KKAPVIWVQGQ-GCTGCSVSLLNAVHPRIKEILLDVISLEFHPTVMASEGEMALAHMYEIAEKFNGNFFLLVEGAIPTAK 84 (283)
T ss_dssp CCEEEEEEESB-CCSHHHHHHHTCBTTBHHHHHHHTEEEEECTTTCSCCHHHHHHHHHHHHHHTTTSSEEEEESBEECGG
T ss_pred CCCCEEEEECC-CCCCHHHHHHCCCCCCHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC
T ss_conf 99988987388-78766999975799888999626276765221202306899999999863568884999984466788
Q ss_pred H-------------------HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCEE--CC------CCCCCCCEEECCCC
Q ss_conf 9-------------------999999984686661998535566886347887220--77------22232230674887
Q gi|254780853|r 107 A-------------------SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV--RG------CDRIVPVDIYVPGC 159 (185)
Q Consensus 107 ~-------------------~~l~~~yeqmpePK~ViA~G~Ca~sGG~f~~sY~v~--~g------~d~~iPVDvyVPGC 159 (185)
- +.+..+.+..+..|+|||+|+||+.||+.....+.. .+ .+.++++|++||||
T Consensus 85 ~~~~~~~g~~~~~~~~~~~~~~~e~l~~lr~kak~vVA~GtCA~~GGIpa~~~n~t~~~~~~~~~~~~~~~~~~inipGC 164 (283)
T 1cc1_S 85 EGRYCIVGETLDAKAHHHEVTMMELIRDLAPKSLATVAVGTCSAYGGIPAAEGNVTGSKSVRDFFADEKIEKLLVNVPGC 164 (283)
T ss_dssp GGTTBEEEC---CCSSSCCEEHHHHHHHHGGGSSEEEEESHHHHHCTGGGSTTCCSCEECHHHHHHHHTCCCCEEEECCS
T ss_pred CCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCEEEHEECCCCCCCCCEEECCCC
T ss_conf 87135423655544445674599999999730988999853210279654457887650201004667757852467999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q ss_conf 689899999999999999
Q gi|254780853|r 160 PPTAEALIYGILLLQKKI 177 (185)
Q Consensus 160 PPrPeail~gl~~L~~ki 177 (185)
||+||.|+..+..+...+
T Consensus 165 Pp~pd~i~~tl~~~l~~~ 182 (283)
T 1cc1_S 165 PPHPDWMVGTLVAAWSHV 182 (283)
T ss_dssp SCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHEEEHHEEHHCC
T ss_conf 988145120110000100
No 7
>1h2a_S Hydrogenase; SO ligand, hydrogen metabolism, Mg center, MIR, MAD, oxidoreductase; 1.80A {Desulfovibrio vulgaris str} SCOP: e.19.1.1
Probab=99.68 E-value=1.1e-17 Score=123.11 Aligned_cols=133 Identities=20% Similarity=0.302 Sum_probs=96.6
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCCCCHHHCC-EEECCCC--------------------CCCCEEEEECC
Q ss_conf 99998456128834775235465213566336667867648-4870682--------------------20607997141
Q gi|254780853|r 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG-FAPRASP--------------------RQSDVMIVAGT 101 (185)
Q Consensus 43 ~d~l~nW~R~~Slwp~~fg~aCC~iE~~a~~~p~yD~eRfG-~~~~~sP--------------------RqADvliVtG~ 101 (185)
.+.+.+..|-+-+|.-.-+.+.|.+.++.+..|..|--.+. +.++-.| .+.||++|.|.
T Consensus 48 a~a~~~~~kp~ViWl~~~~C~GCs~SlL~~~~p~l~~lll~~I~l~yhptlma~~G~~a~~~l~~~~~~~~~~ilvVEGs 127 (317)
T 1h2a_S 48 ARALMGPRRPSVVYLHNAECTGCSESVLRAFEPYIDTLILDTLSLDYHETIMAAAGDAAEAALEQAVNSPHGFIAVVEGG 127 (317)
T ss_dssp ---CCCSSSCEEEEEECBCCSHHHHHHTTCTTTTHHHHHHTTCEEEECTTTCSCCHHHHHHHHHHHHSCTTCCEEEEESB
T ss_pred HHHHHCCCCCCEEEEECCCCCCHHHHHHCCCCCCHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 99985599983799758978875999976699989999857804985253013325789999999862667869999503
Q ss_pred CCHHHH---------HHHHHHHHHCCCCCEEEEECCCCCCCCCCCC--CCCEECCCCCCC----CCEEECCCCCCCHHHH
Q ss_conf 345569---------9999999846866619985355668863478--872207722232----2306748876898999
Q gi|254780853|r 102 LTNKMA---------SALRRVYDQMPEPRYVISMGSCANGGGYYHY--SYSVVRGCDRIV----PVDIYVPGCPPTAEAL 166 (185)
Q Consensus 102 vT~km~---------~~l~~~yeqmpePK~ViA~G~Ca~sGG~f~~--sY~v~~g~d~~i----PVDvyVPGCPPrPeai 166 (185)
|..+.- +.+..+.+..+..|+|||+|+||+.||+..- ++.-..|+++++ .+|++||||||+|+.|
T Consensus 128 Ip~~~~g~y~~ig~~~~~e~~~~l~~kAk~VIAvGtCA~~GGIpaa~pnptga~gv~~~l~~~~~~vinIPGCPp~pd~i 207 (317)
T 1h2a_S 128 IPTAANGIYGKVANHTMLDICSRILPKAQAVIAYGTCATFGGVQAAKPNPTGAKGVNDALKHLGVKAINIAGCPPNPYNL 207 (317)
T ss_dssp EECGGGGTTBEETTEEHHHHHHHHGGGCSEEEEESHHHHHCCGGGSTTCTTCEECHHHHHGGGTCCCBCCCCSSCCHHHH
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHCCEEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHH
T ss_conf 45788831466779229999999985297799975043238853457999875243111111598338827999898999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254780853|r 167 IYGILLLQK 175 (185)
Q Consensus 167 l~gl~~L~~ 175 (185)
+..|..+..
T Consensus 208 ~~tl~~~l~ 216 (317)
T 1h2a_S 208 VGTIVYYLK 216 (317)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
T ss_conf 999999983
No 8
>2wpn_A Periplasmic [nifese] hydrogenase, small subunit; metal-binding, oxidoreductase, oxygen tolerance; HET: FSX SBY PSW; 2.04A {Desulfovibrio vulgaris}
Probab=99.51 E-value=1.8e-14 Score=104.22 Aligned_cols=123 Identities=19% Similarity=0.408 Sum_probs=88.4
Q ss_pred HCCCCEEEEECCCC--CCHHHHHHCCCCCC--HHHCCEEECCCC---------------------CCCCEEEEECCCCHH
Q ss_conf 12883477523546--52135663366678--676484870682---------------------206079971413455
Q gi|254780853|r 51 RTGSLMWMTFGLAC--CAVEMMQASMPRYD--LERFGFAPRASP---------------------RQSDVMIVAGTLTNK 105 (185)
Q Consensus 51 R~~Slwp~~fg~aC--C~iE~~a~~~p~yD--~eRfG~~~~~sP---------------------RqADvliVtG~vT~k 105 (185)
|-+=+| ++++ +| |.+.+..+..|..+ +..+ +.++..| +..||++|.|.|+.+
T Consensus 41 k~~viW-l~~~-~C~GC~iSlL~~~~p~l~d~l~~~-i~l~yhp~lm~~~g~~a~~~l~~~~~~~~~~~IlvVEGsI~~~ 117 (317)
T 2wpn_A 41 RPPVFW-LQGQ-GCTGCSVTLLNSVHPSIADVLLKV-ISLEFHPTVMAWEGEHAIEHMRKVAEKFKGKFFLVIEGSVPVE 117 (317)
T ss_dssp CCEEEE-EESB-CCSHHHHHHHTCCCTTHHHHHHHT-CEEEECTTTCSCCHHHHHHHHHHHHHHTTTTEEEEEESBEECT
T ss_pred CCCEEE-EECC-CCCCHHHHHHCCCCCCHHHHHHCC-EEEEECCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC
T ss_conf 983798-6389-787669998677999899998405-4475321243452689999999998436786489986226538
Q ss_pred HH--------------HHHHHHHHHCCCCCEEEEECCCCCCCCCCC--CCCCEECCCCCCC------CCEEECCCCCCCH
Q ss_conf 69--------------999999984686661998535566886347--8872207722232------2306748876898
Q gi|254780853|r 106 MA--------------SALRRVYDQMPEPRYVISMGSCANGGGYYH--YSYSVVRGCDRIV------PVDIYVPGCPPTA 163 (185)
Q Consensus 106 m~--------------~~l~~~yeqmpePK~ViA~G~Ca~sGG~f~--~sY~v~~g~d~~i------PVDvyVPGCPPrP 163 (185)
.. +.+..+.+..+..|.|||+|+||+.||+.. .++.-..++++++ ..+++||||||+|
T Consensus 118 ~~~~~~~~g~~~~~~~~~~e~lk~lr~kak~vVA~GtCA~~GGIpa~~~~~t~~~~~~~~~~~~~~~~pvinipgcPp~p 197 (317)
T 2wpn_A 118 ADGKYCIIGEANHHEISMVDALKEFGPNAAAVLAVGTCAAYGGIPAAEGSETGATAVSKFLGDNGIKTPVVNIPGCPPHP 197 (317)
T ss_dssp GGGTTBEEEEETTEEEEHHHHHHHHGGGEEEEEEEHHHHHHCTGGGSTTCCSCEECHHHHHHHTTCCCCEEEECSSSCCH
T ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEECCHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEECCCCCCCH
T ss_conf 99615864487777664999999998528778997410102783446789988633887507656789721589998971
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999999
Q gi|254780853|r 164 EALIYGILLLQKK 176 (185)
Q Consensus 164 eail~gl~~L~~k 176 (185)
+.|.+.+..+...
T Consensus 198 ~~i~~~l~~~~~~ 210 (317)
T 2wpn_A 198 DWIVGTVVLALDA 210 (317)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC
T ss_conf 7899999999750
No 9
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3nch_A 3naz_A 3o3c_A*
Probab=64.21 E-value=0.37 Score=26.58 Aligned_cols=61 Identities=13% Similarity=0.079 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCEECCCCCCCCCEEECCCCCCCHHH
Q ss_conf 5699999999846866619985355668863478872207722232230674887689899
Q gi|254780853|r 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165 (185)
Q Consensus 105 km~~~l~~~yeqmpePK~ViA~G~Ca~sGG~f~~sY~v~~g~d~~iPVDvyVPGCPPrPea 165 (185)
+++..-.++|+..-+-.+...+..|+...+...+.++..++....+|.+.++||||+....
T Consensus 621 ~~~~~Y~~aY~~AL~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 681 (725)
T 3nb0_A 621 RMGLEYVKARQLALRRGYPDQFRELVGEELNDSNMDALAGGKKLKVARPLSVPGSPRDLRS 681 (725)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHTTSSCCCCSSHHHHC----------------------
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9999999999999987486532333478632332001056665567876678999987566
No 10
>3ca8_A Protein YDCF; two domains, alpha/beta fold, helix bundle, structural genomics, structure 2 function project, S2F, unknown function; 1.80A {Escherichia coli K12}
Probab=39.91 E-value=21 Score=16.37 Aligned_cols=24 Identities=21% Similarity=0.490 Sum_probs=11.3
Q ss_pred EEEEEC-CCCHHHHHHHHHHHHHCC
Q ss_conf 799714-134556999999998468
Q gi|254780853|r 95 VMIVAG-TLTNKMASALRRVYDQMP 118 (185)
Q Consensus 95 vliVtG-~vT~km~~~l~~~yeqmp 118 (185)
++||+- +..+.+.-.+++.|...+
T Consensus 147 iilV~~p~h~rRa~atf~k~~~~~~ 171 (266)
T 3ca8_A 147 AIVVQDPTMQRRTMATFRRMTGDNP 171 (266)
T ss_dssp EEEECCTTTHHHHHHHHHHHHCCCT
T ss_pred EEEECCHHHHHHHHHHHHHHCCCCC
T ss_conf 9998988999999999999747777
No 11
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein structure initiative; HET: TLA; 1.50A {Streptococcus pneumoniae TIGR4} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=35.10 E-value=25 Score=15.92 Aligned_cols=123 Identities=10% Similarity=0.054 Sum_probs=61.8
Q ss_pred EEEEECCCCCCHHHHHHC--CCCC-CHHHCCEEECCCCCCCCEEEEECCCCH-----HHHHHHHHHHHHC----CCCCEE
Q ss_conf 477523546521356633--6667-867648487068220607997141345-----5699999999846----866619
Q gi|254780853|r 56 MWMTFGLACCAVEMMQAS--MPRY-DLERFGFAPRASPRQSDVMIVAGTLTN-----KMASALRRVYDQM----PEPRYV 123 (185)
Q Consensus 56 wp~~fg~aCC~iE~~a~~--~p~y-D~eRfG~~~~~sPRqADvliVtG~vT~-----km~~~l~~~yeqm----pePK~V 123 (185)
.++.+..+||.--+.... .+.. |+++ ....-.+||++|++.|+-. .|.-.+-|+.... -.-|.+
T Consensus 44 ~~i~~~~~~c~~c~~~~~~~~~~~dd~~~----i~~~i~~AD~II~~sPvY~~~vsa~lK~fiDrl~~~~h~~~l~gK~~ 119 (242)
T 1sqs_A 44 SELEISNSDSEELFKKGIDRQSNADDGGV----IKKELLESDIIIISSPVYLQNVSVDTKNFIERIGGWSHLFRLAGKFV 119 (242)
T ss_dssp CCCCCCCCCHHHHHHHCCCSSTTTSTHHH----HHHHHHHCSEEEEEEEECSSSCCHHHHHHHHHTGGGTTTTTTTTCEE
T ss_pred CCCCCCHHHHHHHHCCCCCCCCCHHHHHH----HHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEE
T ss_conf 57650045677874188876877078999----99999969989997262167668999999997344255567899879
Q ss_pred EEECCCCCCCCCCCCCC--C--EECCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 98535566886347887--2--20772223223067488768989999999999999964126
Q gi|254780853|r 124 ISMGSCANGGGYYHYSY--S--VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 (185)
Q Consensus 124 iA~G~Ca~sGG~f~~sY--~--v~~g~d~~iPVDvyVPGCPPrPeail~gl~~L~~ki~~~~~ 182 (185)
+++.+++.+|+-.--.| . ..-|+..+=-+-+..-.=|...+.+.....++.+.|+++..
T Consensus 120 ~~v~t~gg~G~~~~~~~L~~~l~~lG~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 182 (242)
T 1sqs_A 120 VTLDVAESNGSDNVSEYLRDIFSYMGGQILHQVSITNSLKDIAEAQLMEATYKIEDVLEGKIK 182 (242)
T ss_dssp EEEEEESSCCSCCHHHHHHHHHHHTTCEEEEEEEEEGGGGGGHHHHHHHHHHHHHHHHTTCCC
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCEEECEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999985783599999999999998899894627896078952069999999999999854767
No 12
>2z1d_A Hydrogenase expression/formation protein HYPD; [NIFE] hydrogenase maturation, [4Fe-4S] cluster, thiol redox; HET: CSW; 2.07A {Thermococcus kodakarensis KOD1}
Probab=33.17 E-value=26 Score=15.78 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=19.4
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 6748876898999999999999996412
Q gi|254780853|r 154 IYVPGCPPTAEALIYGILLLQKKIRRVG 181 (185)
Q Consensus 154 vyVPGCPPrPeail~gl~~L~~ki~~~~ 181 (185)
.-|.|= .|++||.||..|.+.|.+.+
T Consensus 223 ~VIaGF--Ep~DiL~ai~~ll~qi~~g~ 248 (372)
T 2z1d_A 223 QVVAGF--EPNDVLMAILMLIRMYKEGE 248 (372)
T ss_dssp EEEECS--SHHHHHHHHHHHHHHHHTTC
T ss_pred EEEECC--CHHHHHHHHHHHHHHHHCCC
T ss_conf 798288--96999999999999997799
No 13
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Probab=30.28 E-value=18 Score=16.67 Aligned_cols=49 Identities=20% Similarity=0.451 Sum_probs=24.2
Q ss_pred CEEECCCCCCCCEEEEECCCC------HHHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 848706822060799714134------5569999999984686661998535566
Q gi|254780853|r 83 GFAPRASPRQSDVMIVAGTLT------NKMASALRRVYDQMPEPRYVISMGSCAN 131 (185)
Q Consensus 83 G~~~~~sPRqADvliVtG~vT------~km~~~l~~~yeqmpePK~ViA~G~Ca~ 131 (185)
|+.-.++||-+-.++-.+-+. .+....+.++.+.-|+||.+.-+++|..
T Consensus 73 g~~ifa~prf~ta~leE~Di~g~~~~~~eL~r~i~~l~~~r~~Pk~IfV~sTC~s 127 (437)
T 3aek_A 73 GVMIFAEPRFGTAVLEEQDLAGLADAHKELDREVAKLLERRPDIRQLFLVGSCPS 127 (437)
T ss_dssp GGGGGSCCSEEEEECCGGGGSSSCCHHHHHHHHHHHHHHTCTTCCEEEEEECHHH
T ss_pred CCCCCCCCCCEEEECCCCHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCH
T ss_conf 6611167741466546136425576279999999999960899878999746838
No 14
>2r47_A Uncharacterized protein MTH_862; unknown function, structural genomics, APC5901, PSI-2, protein structure initiative; 1.88A {Methanothermobacterthermautotrophicus str}
Probab=25.06 E-value=33 Score=15.20 Aligned_cols=73 Identities=16% Similarity=0.377 Sum_probs=46.0
Q ss_pred CCCHHHCCEEE-CCCCCCCCEEEEECCCCHH----HHHHHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 67867648487-0682206079971413455----699999999846-86661998535566886347887220772223
Q gi|254780853|r 76 RYDLERFGFAP-RASPRQSDVMIVAGTLTNK----MASALRRVYDQM-PEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 (185)
Q Consensus 76 ~yD~eRfG~~~-~~sPRqADvliVtG~vT~k----m~~~l~~~yeqm-pePK~ViA~G~Ca~sGG~f~~sY~v~~g~d~~ 149 (185)
++.+..+|+.+ -.++.++|++++.|-++.. ..+.++.+-+.. ++|+-+| |.|=. .+|.. +|.++.
T Consensus 67 ~l~~~d~Gmq~~~~~~~~~D~vVllGGLAMP~~~vt~e~v~~li~k~~~~~~kii--GICFm--smF~k-----agW~~~ 137 (157)
T 2r47_A 67 KLEVTEYGVELGEISPGNVDVLVLLGGLSMPGIGSDIEDVKKLVEDALEEGGELM--GLCYM--DMFAR-----AGWYEL 137 (157)
T ss_dssp EEEEETTEEEEEEECCCCEEEEEEEGGGGSTTTSCCHHHHHHHHHHHEEEEEEEE--EEEET--THHHH-----TTHHHH
T ss_pred EEECCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEE--EEEHH--HHHHH-----CCCCCC
T ss_conf 8741576227168778999999996765579999899999999998413899799--99739--98987-----699876
Q ss_pred CCCEEECC
Q ss_conf 22306748
Q gi|254780853|r 150 VPVDIYVP 157 (185)
Q Consensus 150 iPVDvyVP 157 (185)
|+-|+.|-
T Consensus 138 IdFD~iID 145 (157)
T 2r47_A 138 LDFDCVIN 145 (157)
T ss_dssp SCCSEEEE
T ss_pred CCCCEEEE
T ss_conf 67548987
No 15
>1xwd_B Follitropin beta chain; hormone-receptor complex, leucine-rich repeats, cysteine- knot motif, hormone/growth factor complex; HET: NAG BMA; 2.92A {Homo sapiens} SCOP: g.17.1.4 PDB: 1fl7_B*
Probab=20.92 E-value=33 Score=15.19 Aligned_cols=36 Identities=22% Similarity=0.359 Sum_probs=20.0
Q ss_pred CCCCCCCCCCC----CCCCEECCCCCCCCCEEECCCCCCC
Q ss_conf 35566886347----8872207722232230674887689
Q gi|254780853|r 127 GSCANGGGYYH----YSYSVVRGCDRIVPVDIYVPGCPPT 162 (185)
Q Consensus 127 G~Ca~sGG~f~----~sY~v~~g~d~~iPVDvyVPGCPPr 162 (185)
|-|-..--.|. .++..+=.-++....-+.+|||||.
T Consensus 30 G~C~T~dpv~~~p~~~~~q~VCty~~~~y~tv~LpgC~~g 69 (111)
T 1xwd_B 30 GYCYTRDLVYKDPARPKIQKTCTFKELVYETVRVPGCAHH 69 (111)
T ss_dssp EEEEEECCSSCCTTSCCCCCEEEEEEEEEEEEEECCBTTB
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC
T ss_conf 3836667446387887667763567679999989996699
No 16
>3ikb_A Uncharacterized conserved protein; APC63946, streptococcus mutans UA159, structural genomics, PSI-2, protein structure initiative; HET: FLC; 1.67A {Streptococcus mutans}
Probab=20.72 E-value=35 Score=15.03 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=20.3
Q ss_pred HHHH-HHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 6999-99999846866619985355668
Q gi|254780853|r 106 MASA-LRRVYDQMPEPRYVISMGSCANG 132 (185)
Q Consensus 106 m~~~-l~~~yeqmpePK~ViA~G~Ca~s 132 (185)
..+. +..+.++++.||.+|++|+-|..
T Consensus 107 ~~~~~~~~l~~~l~~pklIv~LG~~A~~ 134 (198)
T 3ikb_A 107 FAQKWHQPILDLLPDIQLTILIGNYAQK 134 (198)
T ss_dssp HHHHHHHHHHTTCTTCCEEEEESHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEEECHHHHH
T ss_conf 9999999999866897099987899999
No 17
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=20.72 E-value=22 Score=16.25 Aligned_cols=27 Identities=11% Similarity=0.418 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 5569999999984686661998535566
Q gi|254780853|r 104 NKMASALRRVYDQMPEPRYVISMGSCAN 131 (185)
Q Consensus 104 ~km~~~l~~~yeqmpePK~ViA~G~Ca~ 131 (185)
.|....++.+++. ++||.+.-+++|..
T Consensus 83 e~L~~~I~ei~~~-~~P~~I~V~sTC~s 109 (460)
T 2xdq_A 83 EELKRLCLEIKRD-RNPSVIVWIGTCTT 109 (460)
T ss_dssp HHHHHHHHHHHHH-HCCSEEEEEECHHH
T ss_pred HHHHHHHHHHHHC-CCCCEEEEECCCCH
T ss_conf 9999999999860-59988999767608
No 18
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=20.47 E-value=46 Score=14.35 Aligned_cols=122 Identities=14% Similarity=0.177 Sum_probs=64.3
Q ss_pred EHHHHHHHHHCCCCEEE--EECCCCCCHHHHHHCCC-CCCHHHCCEEECC--C--C-C---------CCCEEEEECCCC-
Q ss_conf 59999845612883477--52354652135663366-6786764848706--8--2-2---------060799714134-
Q gi|254780853|r 42 SVDQLVTWARTGSLMWM--TFGLACCAVEMMQASMP-RYDLERFGFAPRA--S--P-R---------QSDVMIVAGTLT- 103 (185)
Q Consensus 42 ~~d~l~nW~R~~Slwp~--~fg~aCC~iE~~a~~~p-~yD~eRfG~~~~~--s--P-R---------qADvliVtG~vT- 103 (185)
+.+++.....++.+-.+ ..|+---+.=.-+..+. +|.+++||+.... + | - .||+++|+..+|
T Consensus 590 ~~~Ei~e~i~rRp~kVVvAK~GqDGHdvGAkvIAnaKhfg~e~ygvEV~~LG~QVppEEiV~kAIE~dADaIlVSqlvTQ 669 (763)
T 3kp1_A 590 SEDEIREDIEKTPLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAAIELKADAILASTIISH 669 (763)
T ss_dssp CHHHHHHHHHHSCCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHHHHTTCSEEEEECCCCG
T ss_pred CHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEEHHHHH
T ss_conf 78999986066884799957787632058999987773242246658983357689899999999769999996656540
Q ss_pred ----HHHHHHHHHHH-HHCCCCCEEEEECCCCCCCCCCCCCCCEECCCCCCCCCEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf ----55699999999-8468666199853556688634788722077222322306748876898999999999999
Q gi|254780853|r 104 ----NKMASALRRVY-DQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 (185)
Q Consensus 104 ----~km~~~l~~~y-eqmpePK~ViA~G~Ca~sGG~f~~sY~v~~g~d~~iPVDvyVPGCPPrPeail~gl~~L~~ 175 (185)
.+..|.|..+. ++-..-|.++.+|- .-...-.+.-.|+|. +|=||- .|.....-|++-.+
T Consensus 670 ~d~H~tn~p~Lie~L~~~G~RDkIivV~GG-----Prid~e~a~elGvdA-----gFGpGT--~~~dVAsfiv~~~~ 734 (763)
T 3kp1_A 670 DDIHYKNMKRIHELAVEKGIRDKIMIGCGG-----TQVTPEVAVKQGVDA-----GFGRGS--KGIHVATFLVKKRR 734 (763)
T ss_dssp GGHHHHHHHHHHHHHHHTTCTTTSEEEEEC-----TTCCHHHHHTTTCSE-----EECTTC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEEECC-----CCCCHHHHHHCCCCC-----CCCCCC--CHHHHHHHHHHHHH
T ss_conf 333988899999999963888875999679-----877879999749250-----008999--87899999999999
Done!