Query         gi|254780853|ref|YP_003065266.1| NADH dehydrogenase subunit B [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 185
No_of_seqs    158 out of 603
Neff          4.3 
Searched_HMMs 13730
Date          Wed Jun  1 10:09:55 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780853.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d2fug61 e.19.1.2 (6:15-175) NA 100.0       0       0  457.0   7.3  147   35-182     2-149 (161)
  2 d1wuis1 e.19.1.1 (S:1-267) Nic  99.9 5.7E-24 4.2E-28  158.3   4.8  126   51-176     6-167 (267)
  3 d1frfs_ e.19.1.1 (S:) Nickel-i  99.8 2.5E-22 1.8E-26  148.7   4.3  120   55-175     6-160 (261)
  4 d1cc1s_ e.19.1.1 (S:) Nickel-i  99.8 8.7E-22 6.3E-26  145.6   3.1  121   55-176     5-176 (278)
  5 d1yq9a1 e.19.1.1 (A:4-264) Nic  99.8 1.1E-20   8E-25  139.2   4.9  120   53-175     5-161 (261)
  6 d1vmea1 c.23.5.1 (A:251-398) R  71.4     3.4 0.00024   19.6   6.3   77  100-178    70-148 (148)
  7 d2b0ja2 c.2.1.6 (A:1-242) 5,10  64.5     4.7 0.00034   18.8   5.7  101   76-180   121-237 (242)
  8 d1hcnb_ g.17.1.4 (B:) Gonadotr  27.0      20  0.0014   15.1   2.7   39  125-163    33-75  (110)
  9 d1xwdb1 g.17.1.4 (B:3-107) Fol  22.4      17  0.0012   15.5   1.5   17  147-163    52-68  (105)
 10 d3bula2 c.23.6.1 (A:741-896) M  19.2      28  0.0021   14.2   4.3   63   90-159    55-120 (156)

No 1  
>d2fug61 e.19.1.2 (6:15-175) NAD-quinone oxidoreductase chain 6, Nqo6 {Thermus thermophilus [TaxId: 274]}
Probab=100.00  E-value=0  Score=456.96  Aligned_cols=147  Identities=56%  Similarity=1.045  Sum_probs=142.5

Q ss_pred             HCCEEEEEHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCCCCHHHCCEE-ECCCCCCCCEEEEECCCCHHHHHHHHHH
Q ss_conf             087688559999845612883477523546521356633666786764848-7068220607997141345569999999
Q gi|254780853|r   35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRV  113 (185)
Q Consensus        35 ~~~~i~t~~d~l~nW~R~~Slwp~~fg~aCC~iE~~a~~~p~yD~eRfG~~-~~~sPRqADvliVtG~vT~km~~~l~~~  113 (185)
                      ++|+++|++|+++||+|++|+||+|||++||+|||+++.+|+||+||||+. |++||||||+|||+|+||+||+++|+++
T Consensus         2 ~~~~i~t~~~~~~nw~r~~Slw~~~~g~~cC~iE~~a~~~p~yD~eRfG~~~~~~sPR~ADvllVtG~vT~km~~~l~~~   81 (161)
T d2fug61           2 REGILFTTLEKLVAWGRSNSLWPATFGLACCAIEMMASTDARNDLARFGSEVFRASPRQADVMIVAGRLSKKMAPVMRRV   81 (161)
T ss_dssp             TTSHHHHHHHHHHHHHHHHCCCCCCEECSHHHHHTGGGCCC-----------------CCCCEEEESCCBTTTHHHHHHH
T ss_pred             CCCEEEEEHHHHHHHHHHCCCCEEECCCCCCHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHH
T ss_conf             88568756999988998088730020556308777531387665666234235788654767897063308889999999


Q ss_pred             HHHCCCCCEEEEECCCCCCCCCCCCCCCEECCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             984686661998535566886347887220772223223067488768989999999999999964126
Q gi|254780853|r  114 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN  182 (185)
Q Consensus       114 yeqmpePK~ViA~G~Ca~sGG~f~~sY~v~~g~d~~iPVDvyVPGCPPrPeail~gl~~L~~ki~~~~~  182 (185)
                      ||||||||||||+|+||++||+| +||++++|+|++||||+||||||||||+||+||++||+||+++..
T Consensus        82 y~qmPePK~VIA~GaCa~sGG~f-~~y~v~~gvd~~iPVDvyIPGCPPrPeail~gl~~l~~ki~~~~~  149 (161)
T d2fug61          82 WEQMPDPKWVISMGACASSGGMF-NNYAIVQNVDSVVPVDVYVPGCPPRPEALIYAVMQLQKKVRGQAY  149 (161)
T ss_dssp             HHTSCSSCCEEEEHHHHHSCTTC-CSTTBCSCGGGTSCCSEEECCSSCCHHHHHHHHHHHHHHHHSSCC
T ss_pred             HHHCCCCCEEEEECCCCCCCCCC-CCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             99678976699855445678766-876445785755767516899874989999999999999863000


No 2  
>d1wuis1 e.19.1.1 (S:1-267) Nickel-iron hydrogenase, small subunit {Desulfovibrio vulgaris [TaxId: 881]}
Probab=99.88  E-value=5.7e-24  Score=158.31  Aligned_cols=126  Identities=20%  Similarity=0.323  Sum_probs=99.6

Q ss_pred             HCCCCEEEEECCCCCCHHHHHHCCCCCCHHHCC-EEECCC--------------------CCCCCEEEEECCCCHHHH--
Q ss_conf             128834775235465213566336667867648-487068--------------------220607997141345569--
Q gi|254780853|r   51 RTGSLMWMTFGLACCAVEMMQASMPRYDLERFG-FAPRAS--------------------PRQSDVMIVAGTLTNKMA--  107 (185)
Q Consensus        51 R~~Slwp~~fg~aCC~iE~~a~~~p~yD~eRfG-~~~~~s--------------------PRqADvliVtG~vT~km~--  107 (185)
                      |-+.+|.-.-+.++|.++++.+..|.+|...++ +.++-+                    ++++||++|+|.|+.++.  
T Consensus         6 rp~v~Wl~~~~C~GC~iSlL~~~~p~~d~~~~~~i~l~y~p~lm~~~g~~~~~~~~~~~~~~~~dilvVEGsI~~~~~~~   85 (267)
T d1wuis1           6 RPSVVYLHNAECTGCSESVLRAFEPYIDTLILDTLSLDYHETIMAAAGDAAEAALEQAVNSPHGFIAVVEGGIPTAANGI   85 (267)
T ss_dssp             SCEEEEEECBCCSHHHHHHHTCTTTTHHHHHHTTCEEEECTTTCSCCHHHHHHHHHHHHTCTTCEEEEEESBEECGGGGT
T ss_pred             CCCEEEEECCCCCCHHHHHHCCCCCCHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC
T ss_conf             88189983884787399997269987899975883698625321221478999999975366774999825667655432


Q ss_pred             -------HHHHHHHHHCCCCCEEEEECCCCCCCCCCC--CCCCEECCCC----CCCCCEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             -------999999984686661998535566886347--8872207722----232230674887689899999999999
Q gi|254780853|r  108 -------SALRRVYDQMPEPRYVISMGSCANGGGYYH--YSYSVVRGCD----RIVPVDIYVPGCPPTAEALIYGILLLQ  174 (185)
Q Consensus       108 -------~~l~~~yeqmpePK~ViA~G~Ca~sGG~f~--~sY~v~~g~d----~~iPVDvyVPGCPPrPeail~gl~~L~  174 (185)
                             +.+.++++.++++|+|||+|+||+.||++.  .++....+++    +++.||+|||||||+|+.|+..|..+.
T Consensus        86 ~~~~~~~~~~e~v~~~r~~ak~vVAvGtCA~~GGI~a~~~~~t~~~~~~~~l~~~~~vdi~IpGCPp~p~~i~~~l~~~l  165 (267)
T d1wuis1          86 YGKVANHTMLDICSRILPKAQAVIAYGTCATFGGVQAAKPNPTGAKGVNDALKHLGVKAINIAGCPPNPYNLVGTIVYYL  165 (267)
T ss_dssp             TBEETTEEHHHHHHHHGGGSSEEEEESHHHHHCCGGGSTTCTTCEECHHHHHGGGTCCCEEECSSSCCHHHHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHCCCEEEEEECHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf             02127804999999984249889995030104786666799766423533344568972784898989999999999998


Q ss_pred             HH
Q ss_conf             99
Q gi|254780853|r  175 KK  176 (185)
Q Consensus       175 ~k  176 (185)
                      ..
T Consensus       166 ~~  167 (267)
T d1wuis1         166 KN  167 (267)
T ss_dssp             HH
T ss_pred             HC
T ss_conf             35


No 3  
>d1frfs_ e.19.1.1 (S:) Nickel-iron hydrogenase, small subunit {Desulfovibrio fructosovorans [TaxId: 878]}
Probab=99.84  E-value=2.5e-22  Score=148.71  Aligned_cols=120  Identities=18%  Similarity=0.451  Sum_probs=99.3

Q ss_pred             CEEEEECCCC--CCHHHHHHCCCCCC---HHHCCEEECC------------------CCCCCCEEEEECCCCHHHH----
Q ss_conf             3477523546--52135663366678---6764848706------------------8220607997141345569----
Q gi|254780853|r   55 LMWMTFGLAC--CAVEMMQASMPRYD---LERFGFAPRA------------------SPRQSDVMIVAGTLTNKMA----  107 (185)
Q Consensus        55 lwp~~fg~aC--C~iE~~a~~~p~yD---~eRfG~~~~~------------------sPRqADvliVtG~vT~km~----  107 (185)
                      +.+++++ +|  |.++++.+..|.+|   ++.+-+.+..                  ++++.|+++|+|.|+.++.    
T Consensus         6 ViWl~~~-~C~GCs~S~l~~~~p~l~~~l~~~i~l~y~p~lm~~~g~~~~~~l~~~~~~~~~~vl~VEGsV~~~~~g~~~   84 (261)
T d1frfs_           6 VVWLHNA-ECTGCTEAAIRTIKPYIDALILDTISLDYQETIMAAAGETSEAALHEALEGKDGYYLVVEGGLPTIDGGQWG   84 (261)
T ss_dssp             EEEEECB-CCSHHHHHHTTCTTTTHHHHHHHTCEEEECTTTCSCCHHHHHHHHHHHHHCSSCCEEEEESBEECHHHHTTB
T ss_pred             EEEEECC-CCCCHHHHHHCCCCCCHHHHHHCCEEEEECCCCCHHCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEE
T ss_conf             8998488-388629999746998689997487469751643211136799999987505677179986477348896046


Q ss_pred             -----HHHHHHHHHCCCCCEEEEECCCCCCCCCC--CCCCCEECCCCCCCCCEE-ECCCCCCCHHHHHHHHHHHHH
Q ss_conf             -----99999998468666199853556688634--788722077222322306-748876898999999999999
Q gi|254780853|r  108 -----SALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIVPVDI-YVPGCPPTAEALIYGILLLQK  175 (185)
Q Consensus       108 -----~~l~~~yeqmpePK~ViA~G~Ca~sGG~f--~~sY~v~~g~d~~iPVDv-yVPGCPPrPeail~gl~~L~~  175 (185)
                           +.+.++++..+.+|+|||+|+||+.||++  ..++.-..|+++++++|+ +||||||+|+.|+.+|..|..
T Consensus        85 ~~~~~~~~e~~~~~~~~ak~vIAvGtCA~~GGI~a~~~n~t~~~~v~~~i~~~vinIpGCPp~p~~i~~~l~~ll~  160 (261)
T d1frfs_          85 MVAGHPMIETCKKAAAKAKGIICIGTCSPYGGVQKAKPNPSQAKGVSEALGVKTINIPGCPPNPINFVGAVVHVLT  160 (261)
T ss_dssp             EETTEEHHHHHHHHHHHCSEEEEETTHHHHCCSTTSTTCTTCEECHHHHHTSCCEEECSSSCCHHHHHHHHHHHHT
T ss_pred             EECCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             5469449999997605787899984351227864557997655475562687658716999999999999999982


No 4  
>d1cc1s_ e.19.1.1 (S:) Nickel-iron hydrogenase, small subunit {Desulfomicrobium baculatum [TaxId: 899]}
Probab=99.82  E-value=8.7e-22  Score=145.60  Aligned_cols=121  Identities=20%  Similarity=0.444  Sum_probs=94.9

Q ss_pred             CEEEEECCCC--CCHHHHHHCCCCCC--H-HHCCEEE-------------------CCCCCCCCEEEEECCCCHHHH---
Q ss_conf             3477523546--52135663366678--6-7648487-------------------068220607997141345569---
Q gi|254780853|r   55 LMWMTFGLAC--CAVEMMQASMPRYD--L-ERFGFAP-------------------RASPRQSDVMIVAGTLTNKMA---  107 (185)
Q Consensus        55 lwp~~fg~aC--C~iE~~a~~~p~yD--~-eRfG~~~-------------------~~sPRqADvliVtG~vT~km~---  107 (185)
                      +.+++++ +|  |.+++..+..|..|  + +.+-+.+                   ...+++.|+++|+|.|..+.-   
T Consensus         5 vvWl~~~-sC~GC~iS~ln~~~p~l~~~ll~~i~l~yhp~l~~~~g~~~~~~~~~~~~~~~~~dillVEGsI~~~~~~~~   83 (278)
T d1cc1s_           5 VIWVQGQ-GCTGCSVSLLNAVHPRIKEILLDVISLEFHPTVMASEGEMALAHMYEIAEKFNGNFFLLVEGAIPTAKEGRY   83 (278)
T ss_dssp             EEEEESB-CCSHHHHHHHTCBTTBHHHHHHHTEEEEECTTTCSCCHHHHHHHHHHHHHHTTTSSEEEEESBEECGGGGTT
T ss_pred             EEEECCC-CCCCHHHHHHCCCCCCHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEE
T ss_conf             8986388-788639999767998889997323777653102023037899999998635678828984267678766512


Q ss_pred             ----------------HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCEEC--------CCCCCCCCEEECCCCCCCH
Q ss_conf             ----------------9999999846866619985355668863478872207--------7222322306748876898
Q gi|254780853|r  108 ----------------SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--------GCDRIVPVDIYVPGCPPTA  163 (185)
Q Consensus       108 ----------------~~l~~~yeqmpePK~ViA~G~Ca~sGG~f~~sY~v~~--------g~d~~iPVDvyVPGCPPrP  163 (185)
                                      +.+..+.+..++.|+|||+|+||+.||++..+++..+        +.++++++|++||||||+|
T Consensus        84 ~~~g~~~~~~~~~~~~~~~e~~~~l~~kak~vVAvGtCA~~GGI~a~~~n~t~~~~~~~~~~~~~~~~~~i~IpGCPp~p  163 (278)
T d1cc1s_          84 CIVGETLDAKAHHHEVTMMELIRDLAPKSLATVAVGTCSAYGGIPAAEGNVTGSKSVRDFFADEKIEKLLVNVPGCPPHP  163 (278)
T ss_dssp             BEEEC---CCSSSCCEEHHHHHHHHGGGSSEEEEESHHHHHCTGGGSTTCCSCEECHHHHHHHHTCCCCEEEECCSSCCH
T ss_pred             EEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHEECCCCCCCCCCCCCCCCCCCH
T ss_conf             44236555544446755999999997309889998533102796545578763521120057677578644558989877


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999999999999
Q gi|254780853|r  164 EALIYGILLLQKK  176 (185)
Q Consensus       164 eail~gl~~L~~k  176 (185)
                      +.|++.|..+..-
T Consensus       164 d~i~~tl~~~l~~  176 (278)
T d1cc1s_         164 DWMVGTLVAAWSH  176 (278)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
T ss_conf             8888879999986


No 5  
>d1yq9a1 e.19.1.1 (A:4-264) Nickel-iron hydrogenase, small subunit {Desulfovibrio gigas [TaxId: 879]}
Probab=99.80  E-value=1.1e-20  Score=139.15  Aligned_cols=120  Identities=18%  Similarity=0.322  Sum_probs=91.7

Q ss_pred             CCCEEEEEC-CCCCCHHHHHHCCCCCC---HHHCCEEECCCC------------------CCCCEEEEECCCCHHHH---
Q ss_conf             883477523-54652135663366678---676484870682------------------20607997141345569---
Q gi|254780853|r   53 GSLMWMTFG-LACCAVEMMQASMPRYD---LERFGFAPRASP------------------RQSDVMIVAGTLTNKMA---  107 (185)
Q Consensus        53 ~Slwp~~fg-~aCC~iE~~a~~~p~yD---~eRfG~~~~~sP------------------RqADvliVtG~vT~km~---  107 (185)
                      +-+| ++++ .+.|.++++.+..|-+|   ++.  +.++.+|                  ++.||++|+|.|+.++-   
T Consensus         5 ~v~W-l~~~~C~GC~~S~L~~~~p~l~~~l~~~--i~l~y~p~l~~~~g~~~~~~~~~~~~~~dvlvVEGsV~~~~~g~~   81 (261)
T d1yq9a1           5 SVVY-LHNAECTGCSESVLRTVDPYVDELILDV--ISMDYHETLMAGAGHAVEEALHEAIKGDFVCVIEGGIPMGDGGYW   81 (261)
T ss_dssp             EEEE-EECBCCSHHHHHHHTCTTTTHHHHHHHT--CEEEECTTTCSSCTHHHHHHHHHHTTSSEEEEEESBEECGGGSTT
T ss_pred             EEEE-EECCCCCCHHHHHHCCCCCCHHHHHHCC--EEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCE
T ss_conf             2999-8588378739999736898799997275--679752410223267899998750267738996366657888623


Q ss_pred             ------HHHHHHHHHCCCCCEEEEECCCCCCCCCCCC--CCCEECCCCC----CCCCEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             ------9999999846866619985355668863478--8722077222----322306748876898999999999999
Q gi|254780853|r  108 ------SALRRVYDQMPEPRYVISMGSCANGGGYYHY--SYSVVRGCDR----IVPVDIYVPGCPPTAEALIYGILLLQK  175 (185)
Q Consensus       108 ------~~l~~~yeqmpePK~ViA~G~Ca~sGG~f~~--sY~v~~g~d~----~iPVDvyVPGCPPrPeail~gl~~L~~  175 (185)
                            +.+..+++.+++.|+|||+|+||+.||++..  .+.-..++++    +..+|++||||||+||.|+.+|..|..
T Consensus        82 ~~~~~~~~~e~v~~lr~~ak~vVAvGtCA~~GGI~a~~~~~t~~~~~~~~~~~~~~~~i~IpGCPp~p~~i~~~l~~ll~  161 (261)
T d1yq9a1          82 GKVGGRNMYDICAEVAPKAKAVIAIGTCATYGGVQAAKPNPTGTVGVNEALGKLGVKAINIAGCPPNPMNFVGTVVHLLT  161 (261)
T ss_dssp             BEETTEEHHHHHHHHGGGSSEEEEEHHHHHHCCGGGSTTCTTCEECHHHHHGGGTCCCEEECSSSCCHHHHHHHHHHHHH
T ss_pred             EECCCCHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             40268419999999864288799961444238865567886674031124655688727717989888999999999982


No 6  
>d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=71.35  E-value=3.4  Score=19.60  Aligned_cols=77  Identities=13%  Similarity=0.093  Sum_probs=45.9

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCEE--CCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             41345569999999984686661998535566886347887220--7722232230674887689899999999999999
Q gi|254780853|r  100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV--RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI  177 (185)
Q Consensus       100 G~vT~km~~~l~~~yeqmpePK~ViA~G~Ca~sGG~f~~sY~v~--~g~d~~iPVDvyVPGCPPrPeail~gl~~L~~ki  177 (185)
                      |.+...+...+..+-+.-..-|.+..+|++..+|+-...-...+  .|...+  ..+.+-|-|+..+.+-+.+..+.++|
T Consensus        70 ~~~~~~~~~~l~~~~~~~~~~k~~~~fgs~g~~~~a~~~~~~~l~~~G~~~v--~~~~~~~~~~de~~~~e~~~~~~k~l  147 (148)
T d1vmea1          70 AEIHPLMRFTLLEIIDKANYEKPVLVFGVHGWAPSAERTAGELLKETKFRIL--SFTEIKGSNMDERKIEEAISLLKKEL  147 (148)
T ss_dssp             TEECHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCC-CCHHHHHHTSSCEEE--EEEEECSTTCCTHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEE--EEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf             8159627899999762464798799997178753069999999997699287--55788379998899999999999742


Q ss_pred             H
Q ss_conf             6
Q gi|254780853|r  178 R  178 (185)
Q Consensus       178 ~  178 (185)
                      +
T Consensus       148 ~  148 (148)
T d1vmea1         148 E  148 (148)
T ss_dssp             C
T ss_pred             C
T ss_conf             9


No 7  
>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=64.45  E-value=4.7  Score=18.76  Aligned_cols=101  Identities=19%  Similarity=0.265  Sum_probs=62.8

Q ss_pred             CCCHHHCCEEECCCCC----CCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCEECCCCCCCC
Q ss_conf             6786764848706822----060799714134556999999998468666199853556688634788722077222322
Q gi|254780853|r   76 RYDLERFGFAPRASPR----QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP  151 (185)
Q Consensus        76 ~yD~eRfG~~~~~sPR----qADvliVtG~vT~km~~~l~~~yeqmpePK~ViA~G~Ca~sGG~f~~sY~v~~g~d~~iP  151 (185)
                      +.+-|++|+.+..++.    .||+++++=+....-...++.+-+.+++-..++-+++  ++......-......  +-+.
T Consensus       121 ~~~pEe~Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi~~I~~~l~~g~Iiid~ST--i~~~~~~~l~e~l~~--kgi~  196 (242)
T d2b0ja2         121 LVHPEDVGLKVTSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACT--IPTTKFAKIFKDLGR--EDLN  196 (242)
T ss_dssp             SSCGGGGTCEEESCHHHHHTTCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSS--SCHHHHHHHHHHTTC--TTSE
T ss_pred             CCCHHHCCCEEECCHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHCCCCCEEEECCC--CCHHHHHHHHHHCCC--CCCE
T ss_conf             279888898897989999726886899511689999999999964899968996587--868999999986043--7988


Q ss_pred             CEEECCCCCC------------CHHHHHHHHHHHHHHHHHH
Q ss_conf             3067488768------------9899999999999999641
Q gi|254780853|r  152 VDIYVPGCPP------------TAEALIYGILLLQKKIRRV  180 (185)
Q Consensus       152 VDvyVPGCPP------------rPeail~gl~~L~~ki~~~  180 (185)
                      +.-..|+++|            ..+..++.+..|.+++.++
T Consensus       197 vi~~hp~a~pe~~g~~li~~~~aseE~iekv~elles~Gk~  237 (242)
T d2b0ja2         197 ITSYHPGCVPEMKGQVYIAEGYASEEAVNKLYEIGKIARGK  237 (242)
T ss_dssp             EEECBCSSCTTTCCCEEEEESSSCHHHHHHHHHHHHHHHSC
T ss_pred             EECCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf             98788537676456369941778999999999999997997


No 8  
>d1hcnb_ g.17.1.4 (B:) Gonadotropin B chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.00  E-value=20  Score=15.10  Aligned_cols=39  Identities=23%  Similarity=0.334  Sum_probs=21.3

Q ss_pred             EECCCCCCCCCCC----CCCCEECCCCCCCCCEEECCCCCCCH
Q ss_conf             8535566886347----88722077222322306748876898
Q gi|254780853|r  125 SMGSCANGGGYYH----YSYSVVRGCDRIVPVDIYVPGCPPTA  163 (185)
Q Consensus       125 A~G~Ca~sGG~f~----~sY~v~~g~d~~iPVDvyVPGCPPrP  163 (185)
                      -.|-|-..--.|.    .++-.+=.-+++.-.-+.+|||||.-
T Consensus        33 C~G~C~T~dpv~~~~~~~~~Q~vCty~~~~y~tv~LpgCp~gV   75 (110)
T d1hcnb_          33 CAGYCPTMTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGV   75 (110)
T ss_dssp             EEEEEEECCCCBTTCSSCCCCEEEEEEEEEEEEEECTTCCSSC
T ss_pred             ECCEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCC
T ss_conf             8617132574444767876677646687588999888977998


No 9  
>d1xwdb1 g.17.1.4 (B:3-107) Follicle stimulating hormone, follitropin, beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.45  E-value=17  Score=15.49  Aligned_cols=17  Identities=35%  Similarity=0.663  Sum_probs=13.2

Q ss_pred             CCCCCCEEECCCCCCCH
Q ss_conf             22322306748876898
Q gi|254780853|r  147 DRIVPVDIYVPGCPPTA  163 (185)
Q Consensus       147 d~~iPVDvyVPGCPPrP  163 (185)
                      +++.-.-+.+|||||.-
T Consensus        52 ~~~~y~tv~LpgCp~gV   68 (105)
T d1xwdb1          52 KELVYETVRVPGCAHHA   68 (105)
T ss_dssp             EEEEEEEEEECCBTTBC
T ss_pred             CCEEEEEEECCCCCCCC
T ss_conf             87788999899966899


No 10 
>d3bula2 c.23.6.1 (A:741-896) Methionine synthase, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=19.16  E-value=28  Score=14.18  Aligned_cols=63  Identities=16%  Similarity=0.194  Sum_probs=39.5

Q ss_pred             CCCCCEEEEECCCCHHH---HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCEECCCCCCCCCEEECCCC
Q ss_conf             22060799714134556---99999999846866619985355668863478872207722232230674887
Q gi|254780853|r   90 PRQSDVMIVAGTLTNKM---ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC  159 (185)
Q Consensus        90 PRqADvliVtG~vT~km---~~~l~~~yeqmpePK~ViA~G~Ca~sGG~f~~sY~v~~g~d~~iPVDvyVPGC  159 (185)
                      -..+|++.++..+|..|   ...+..+-++-+..+.++  |     ||.+...+....+.+.++..|+|.+..
T Consensus        55 ~~~~d~i~lS~l~~~~~~~~~~~~~~l~~~g~~~~viv--G-----G~~~~~~~~~~~~~~~y~gad~ya~DA  120 (156)
T d3bula2          55 EVNADLIGLSGLITPSLDEMVNVAKEMERQGFTIPLLI--G-----GATTSKAHTAVKIEQNYSGPTVYVQNA  120 (156)
T ss_dssp             HHTCSEEEEECCSTHHHHHHHHHHHHHHHTTCCSCEEE--E-----STTCCHHHHHHHTGGGCSSCEEECCSH
T ss_pred             HHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEE--E-----CCCCCCHHHHHHHCCCCCCCEEECCCH
T ss_conf             63998899964542326889999999973256623898--5-----044550577765313556660123677


Done!