Query gi|254780853|ref|YP_003065266.1| NADH dehydrogenase subunit B [Candidatus Liberibacter asiaticus str. psy62] Match_columns 185 No_of_seqs 158 out of 603 Neff 4.3 Searched_HMMs 13730 Date Wed Jun 1 10:09:55 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780853.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2fug61 e.19.1.2 (6:15-175) NA 100.0 0 0 457.0 7.3 147 35-182 2-149 (161) 2 d1wuis1 e.19.1.1 (S:1-267) Nic 99.9 5.7E-24 4.2E-28 158.3 4.8 126 51-176 6-167 (267) 3 d1frfs_ e.19.1.1 (S:) Nickel-i 99.8 2.5E-22 1.8E-26 148.7 4.3 120 55-175 6-160 (261) 4 d1cc1s_ e.19.1.1 (S:) Nickel-i 99.8 8.7E-22 6.3E-26 145.6 3.1 121 55-176 5-176 (278) 5 d1yq9a1 e.19.1.1 (A:4-264) Nic 99.8 1.1E-20 8E-25 139.2 4.9 120 53-175 5-161 (261) 6 d1vmea1 c.23.5.1 (A:251-398) R 71.4 3.4 0.00024 19.6 6.3 77 100-178 70-148 (148) 7 d2b0ja2 c.2.1.6 (A:1-242) 5,10 64.5 4.7 0.00034 18.8 5.7 101 76-180 121-237 (242) 8 d1hcnb_ g.17.1.4 (B:) Gonadotr 27.0 20 0.0014 15.1 2.7 39 125-163 33-75 (110) 9 d1xwdb1 g.17.1.4 (B:3-107) Fol 22.4 17 0.0012 15.5 1.5 17 147-163 52-68 (105) 10 d3bula2 c.23.6.1 (A:741-896) M 19.2 28 0.0021 14.2 4.3 63 90-159 55-120 (156) No 1 >d2fug61 e.19.1.2 (6:15-175) NAD-quinone oxidoreductase chain 6, Nqo6 {Thermus thermophilus [TaxId: 274]} Probab=100.00 E-value=0 Score=456.96 Aligned_cols=147 Identities=56% Similarity=1.045 Sum_probs=142.5 Q ss_pred HCCEEEEEHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCCCCHHHCCEE-ECCCCCCCCEEEEECCCCHHHHHHHHHH Q ss_conf 087688559999845612883477523546521356633666786764848-7068220607997141345569999999 Q gi|254780853|r 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRV 113 (185) Q Consensus 35 ~~~~i~t~~d~l~nW~R~~Slwp~~fg~aCC~iE~~a~~~p~yD~eRfG~~-~~~sPRqADvliVtG~vT~km~~~l~~~ 113 (185) ++|+++|++|+++||+|++|+||+|||++||+|||+++.+|+||+||||+. |++||||||+|||+|+||+||+++|+++ T Consensus 2 ~~~~i~t~~~~~~nw~r~~Slw~~~~g~~cC~iE~~a~~~p~yD~eRfG~~~~~~sPR~ADvllVtG~vT~km~~~l~~~ 81 (161) T d2fug61 2 REGILFTTLEKLVAWGRSNSLWPATFGLACCAIEMMASTDARNDLARFGSEVFRASPRQADVMIVAGRLSKKMAPVMRRV 81 (161) T ss_dssp TTSHHHHHHHHHHHHHHHHCCCCCCEECSHHHHHTGGGCCC-----------------CCCCEEEESCCBTTTHHHHHHH T ss_pred CCCEEEEEHHHHHHHHHHCCCCEEECCCCCCHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHH T ss_conf 88568756999988998088730020556308777531387665666234235788654767897063308889999999 Q ss_pred HHHCCCCCEEEEECCCCCCCCCCCCCCCEECCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHCC Q ss_conf 984686661998535566886347887220772223223067488768989999999999999964126 Q gi|254780853|r 114 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 (185) Q Consensus 114 yeqmpePK~ViA~G~Ca~sGG~f~~sY~v~~g~d~~iPVDvyVPGCPPrPeail~gl~~L~~ki~~~~~ 182 (185) ||||||||||||+|+||++||+| +||++++|+|++||||+||||||||||+||+||++||+||+++.. T Consensus 82 y~qmPePK~VIA~GaCa~sGG~f-~~y~v~~gvd~~iPVDvyIPGCPPrPeail~gl~~l~~ki~~~~~ 149 (161) T d2fug61 82 WEQMPDPKWVISMGACASSGGMF-NNYAIVQNVDSVVPVDVYVPGCPPRPEALIYAVMQLQKKVRGQAY 149 (161) T ss_dssp HHTSCSSCCEEEEHHHHHSCTTC-CSTTBCSCGGGTSCCSEEECCSSCCHHHHHHHHHHHHHHHHSSCC T ss_pred HHHCCCCCEEEEECCCCCCCCCC-CCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHCC T ss_conf 99678976699855445678766-876445785755767516899874989999999999999863000 No 2 >d1wuis1 e.19.1.1 (S:1-267) Nickel-iron hydrogenase, small subunit {Desulfovibrio vulgaris [TaxId: 881]} Probab=99.88 E-value=5.7e-24 Score=158.31 Aligned_cols=126 Identities=20% Similarity=0.323 Sum_probs=99.6 Q ss_pred HCCCCEEEEECCCCCCHHHHHHCCCCCCHHHCC-EEECCC--------------------CCCCCEEEEECCCCHHHH-- Q ss_conf 128834775235465213566336667867648-487068--------------------220607997141345569-- Q gi|254780853|r 51 RTGSLMWMTFGLACCAVEMMQASMPRYDLERFG-FAPRAS--------------------PRQSDVMIVAGTLTNKMA-- 107 (185) Q Consensus 51 R~~Slwp~~fg~aCC~iE~~a~~~p~yD~eRfG-~~~~~s--------------------PRqADvliVtG~vT~km~-- 107 (185) |-+.+|.-.-+.++|.++++.+..|.+|...++ +.++-+ ++++||++|+|.|+.++. T Consensus 6 rp~v~Wl~~~~C~GC~iSlL~~~~p~~d~~~~~~i~l~y~p~lm~~~g~~~~~~~~~~~~~~~~dilvVEGsI~~~~~~~ 85 (267) T d1wuis1 6 RPSVVYLHNAECTGCSESVLRAFEPYIDTLILDTLSLDYHETIMAAAGDAAEAALEQAVNSPHGFIAVVEGGIPTAANGI 85 (267) T ss_dssp SCEEEEEECBCCSHHHHHHHTCTTTTHHHHHHTTCEEEECTTTCSCCHHHHHHHHHHHHTCTTCEEEEEESBEECGGGGT T ss_pred CCCEEEEECCCCCCHHHHHHCCCCCCHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC T ss_conf 88189983884787399997269987899975883698625321221478999999975366774999825667655432 Q ss_pred -------HHHHHHHHHCCCCCEEEEECCCCCCCCCCC--CCCCEECCCC----CCCCCEEECCCCCCCHHHHHHHHHHHH Q ss_conf -------999999984686661998535566886347--8872207722----232230674887689899999999999 Q gi|254780853|r 108 -------SALRRVYDQMPEPRYVISMGSCANGGGYYH--YSYSVVRGCD----RIVPVDIYVPGCPPTAEALIYGILLLQ 174 (185) Q Consensus 108 -------~~l~~~yeqmpePK~ViA~G~Ca~sGG~f~--~sY~v~~g~d----~~iPVDvyVPGCPPrPeail~gl~~L~ 174 (185) +.+.++++.++++|+|||+|+||+.||++. .++....+++ +++.||+|||||||+|+.|+..|..+. T Consensus 86 ~~~~~~~~~~e~v~~~r~~ak~vVAvGtCA~~GGI~a~~~~~t~~~~~~~~l~~~~~vdi~IpGCPp~p~~i~~~l~~~l 165 (267) T d1wuis1 86 YGKVANHTMLDICSRILPKAQAVIAYGTCATFGGVQAAKPNPTGAKGVNDALKHLGVKAINIAGCPPNPYNLVGTIVYYL 165 (267) T ss_dssp TBEETTEEHHHHHHHHGGGSSEEEEESHHHHHCCGGGSTTCTTCEECHHHHHGGGTCCCEEECSSSCCHHHHHHHHHHHH T ss_pred EEEECCCHHHHHHHHHHHCCCEEEEEECHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH T ss_conf 02127804999999984249889995030104786666799766423533344568972784898989999999999998 Q ss_pred HH Q ss_conf 99 Q gi|254780853|r 175 KK 176 (185) Q Consensus 175 ~k 176 (185) .. T Consensus 166 ~~ 167 (267) T d1wuis1 166 KN 167 (267) T ss_dssp HH T ss_pred HC T ss_conf 35 No 3 >d1frfs_ e.19.1.1 (S:) Nickel-iron hydrogenase, small subunit {Desulfovibrio fructosovorans [TaxId: 878]} Probab=99.84 E-value=2.5e-22 Score=148.71 Aligned_cols=120 Identities=18% Similarity=0.451 Sum_probs=99.3 Q ss_pred CEEEEECCCC--CCHHHHHHCCCCCC---HHHCCEEECC------------------CCCCCCEEEEECCCCHHHH---- Q ss_conf 3477523546--52135663366678---6764848706------------------8220607997141345569---- Q gi|254780853|r 55 LMWMTFGLAC--CAVEMMQASMPRYD---LERFGFAPRA------------------SPRQSDVMIVAGTLTNKMA---- 107 (185) Q Consensus 55 lwp~~fg~aC--C~iE~~a~~~p~yD---~eRfG~~~~~------------------sPRqADvliVtG~vT~km~---- 107 (185) +.+++++ +| |.++++.+..|.+| ++.+-+.+.. ++++.|+++|+|.|+.++. T Consensus 6 ViWl~~~-~C~GCs~S~l~~~~p~l~~~l~~~i~l~y~p~lm~~~g~~~~~~l~~~~~~~~~~vl~VEGsV~~~~~g~~~ 84 (261) T d1frfs_ 6 VVWLHNA-ECTGCTEAAIRTIKPYIDALILDTISLDYQETIMAAAGETSEAALHEALEGKDGYYLVVEGGLPTIDGGQWG 84 (261) T ss_dssp EEEEECB-CCSHHHHHHTTCTTTTHHHHHHHTCEEEECTTTCSCCHHHHHHHHHHHHHCSSCCEEEEESBEECHHHHTTB T ss_pred EEEEECC-CCCCHHHHHHCCCCCCHHHHHHCCEEEEECCCCCHHCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEE T ss_conf 8998488-388629999746998689997487469751643211136799999987505677179986477348896046 Q ss_pred -----HHHHHHHHHCCCCCEEEEECCCCCCCCCC--CCCCCEECCCCCCCCCEE-ECCCCCCCHHHHHHHHHHHHH Q ss_conf -----99999998468666199853556688634--788722077222322306-748876898999999999999 Q gi|254780853|r 108 -----SALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIVPVDI-YVPGCPPTAEALIYGILLLQK 175 (185) Q Consensus 108 -----~~l~~~yeqmpePK~ViA~G~Ca~sGG~f--~~sY~v~~g~d~~iPVDv-yVPGCPPrPeail~gl~~L~~ 175 (185) +.+.++++..+.+|+|||+|+||+.||++ ..++.-..|+++++++|+ +||||||+|+.|+.+|..|.. T Consensus 85 ~~~~~~~~e~~~~~~~~ak~vIAvGtCA~~GGI~a~~~n~t~~~~v~~~i~~~vinIpGCPp~p~~i~~~l~~ll~ 160 (261) T d1frfs_ 85 MVAGHPMIETCKKAAAKAKGIICIGTCSPYGGVQKAKPNPSQAKGVSEALGVKTINIPGCPPNPINFVGAVVHVLT 160 (261) T ss_dssp EETTEEHHHHHHHHHHHCSEEEEETTHHHHCCSTTSTTCTTCEECHHHHHTSCCEEECSSSCCHHHHHHHHHHHHT T ss_pred EECCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEECCCCCCHHHHHHHHHHHHH T ss_conf 5469449999997605787899984351227864557997655475562687658716999999999999999982 No 4 >d1cc1s_ e.19.1.1 (S:) Nickel-iron hydrogenase, small subunit {Desulfomicrobium baculatum [TaxId: 899]} Probab=99.82 E-value=8.7e-22 Score=145.60 Aligned_cols=121 Identities=20% Similarity=0.444 Sum_probs=94.9 Q ss_pred CEEEEECCCC--CCHHHHHHCCCCCC--H-HHCCEEE-------------------CCCCCCCCEEEEECCCCHHHH--- Q ss_conf 3477523546--52135663366678--6-7648487-------------------068220607997141345569--- Q gi|254780853|r 55 LMWMTFGLAC--CAVEMMQASMPRYD--L-ERFGFAP-------------------RASPRQSDVMIVAGTLTNKMA--- 107 (185) Q Consensus 55 lwp~~fg~aC--C~iE~~a~~~p~yD--~-eRfG~~~-------------------~~sPRqADvliVtG~vT~km~--- 107 (185) +.+++++ +| |.+++..+..|..| + +.+-+.+ ...+++.|+++|+|.|..+.- T Consensus 5 vvWl~~~-sC~GC~iS~ln~~~p~l~~~ll~~i~l~yhp~l~~~~g~~~~~~~~~~~~~~~~~dillVEGsI~~~~~~~~ 83 (278) T d1cc1s_ 5 VIWVQGQ-GCTGCSVSLLNAVHPRIKEILLDVISLEFHPTVMASEGEMALAHMYEIAEKFNGNFFLLVEGAIPTAKEGRY 83 (278) T ss_dssp EEEEESB-CCSHHHHHHHTCBTTBHHHHHHHTEEEEECTTTCSCCHHHHHHHHHHHHHHTTTSSEEEEESBEECGGGGTT T ss_pred EEEECCC-CCCCHHHHHHCCCCCCHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEE T ss_conf 8986388-788639999767998889997323777653102023037899999998635678828984267678766512 Q ss_pred ----------------HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCEEC--------CCCCCCCCEEECCCCCCCH Q ss_conf ----------------9999999846866619985355668863478872207--------7222322306748876898 Q gi|254780853|r 108 ----------------SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--------GCDRIVPVDIYVPGCPPTA 163 (185) Q Consensus 108 ----------------~~l~~~yeqmpePK~ViA~G~Ca~sGG~f~~sY~v~~--------g~d~~iPVDvyVPGCPPrP 163 (185) +.+..+.+..++.|+|||+|+||+.||++..+++..+ +.++++++|++||||||+| T Consensus 84 ~~~g~~~~~~~~~~~~~~~e~~~~l~~kak~vVAvGtCA~~GGI~a~~~n~t~~~~~~~~~~~~~~~~~~i~IpGCPp~p 163 (278) T d1cc1s_ 84 CIVGETLDAKAHHHEVTMMELIRDLAPKSLATVAVGTCSAYGGIPAAEGNVTGSKSVRDFFADEKIEKLLVNVPGCPPHP 163 (278) T ss_dssp BEEEC---CCSSSCCEEHHHHHHHHGGGSSEEEEESHHHHHCTGGGSTTCCSCEECHHHHHHHHTCCCCEEEECCSSCCH T ss_pred EEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHEECCCCCCCCCCCCCCCCCCCH T ss_conf 44236555544446755999999997309889998533102796545578763521120057677578644558989877 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999999999 Q gi|254780853|r 164 EALIYGILLLQKK 176 (185) Q Consensus 164 eail~gl~~L~~k 176 (185) +.|++.|..+..- T Consensus 164 d~i~~tl~~~l~~ 176 (278) T d1cc1s_ 164 DWMVGTLVAAWSH 176 (278) T ss_dssp HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 8888879999986 No 5 >d1yq9a1 e.19.1.1 (A:4-264) Nickel-iron hydrogenase, small subunit {Desulfovibrio gigas [TaxId: 879]} Probab=99.80 E-value=1.1e-20 Score=139.15 Aligned_cols=120 Identities=18% Similarity=0.322 Sum_probs=91.7 Q ss_pred CCCEEEEEC-CCCCCHHHHHHCCCCCC---HHHCCEEECCCC------------------CCCCEEEEECCCCHHHH--- Q ss_conf 883477523-54652135663366678---676484870682------------------20607997141345569--- Q gi|254780853|r 53 GSLMWMTFG-LACCAVEMMQASMPRYD---LERFGFAPRASP------------------RQSDVMIVAGTLTNKMA--- 107 (185) Q Consensus 53 ~Slwp~~fg-~aCC~iE~~a~~~p~yD---~eRfG~~~~~sP------------------RqADvliVtG~vT~km~--- 107 (185) +-+| ++++ .+.|.++++.+..|-+| ++. +.++.+| ++.||++|+|.|+.++- T Consensus 5 ~v~W-l~~~~C~GC~~S~L~~~~p~l~~~l~~~--i~l~y~p~l~~~~g~~~~~~~~~~~~~~dvlvVEGsV~~~~~g~~ 81 (261) T d1yq9a1 5 SVVY-LHNAECTGCSESVLRTVDPYVDELILDV--ISMDYHETLMAGAGHAVEEALHEAIKGDFVCVIEGGIPMGDGGYW 81 (261) T ss_dssp EEEE-EECBCCSHHHHHHHTCTTTTHHHHHHHT--CEEEECTTTCSSCTHHHHHHHHHHTTSSEEEEEESBEECGGGSTT T ss_pred EEEE-EECCCCCCHHHHHHCCCCCCHHHHHHCC--EEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCE T ss_conf 2999-8588378739999736898799997275--679752410223267899998750267738996366657888623 Q ss_pred ------HHHHHHHHHCCCCCEEEEECCCCCCCCCCCC--CCCEECCCCC----CCCCEEECCCCCCCHHHHHHHHHHHHH Q ss_conf ------9999999846866619985355668863478--8722077222----322306748876898999999999999 Q gi|254780853|r 108 ------SALRRVYDQMPEPRYVISMGSCANGGGYYHY--SYSVVRGCDR----IVPVDIYVPGCPPTAEALIYGILLLQK 175 (185) Q Consensus 108 ------~~l~~~yeqmpePK~ViA~G~Ca~sGG~f~~--sY~v~~g~d~----~iPVDvyVPGCPPrPeail~gl~~L~~ 175 (185) +.+..+++.+++.|+|||+|+||+.||++.. .+.-..++++ +..+|++||||||+||.|+.+|..|.. T Consensus 82 ~~~~~~~~~e~v~~lr~~ak~vVAvGtCA~~GGI~a~~~~~t~~~~~~~~~~~~~~~~i~IpGCPp~p~~i~~~l~~ll~ 161 (261) T d1yq9a1 82 GKVGGRNMYDICAEVAPKAKAVIAIGTCATYGGVQAAKPNPTGTVGVNEALGKLGVKAINIAGCPPNPMNFVGTVVHLLT 161 (261) T ss_dssp BEETTEEHHHHHHHHGGGSSEEEEEHHHHHHCCGGGSTTCTTCEECHHHHHGGGTCCCEEECSSSCCHHHHHHHHHHHHH T ss_pred EECCCCHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHH T ss_conf 40268419999999864288799961444238865567886674031124655688727717989888999999999982 No 6 >d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Probab=71.35 E-value=3.4 Score=19.60 Aligned_cols=77 Identities=13% Similarity=0.093 Sum_probs=45.9 Q ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCEE--CCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHH Q ss_conf 41345569999999984686661998535566886347887220--7722232230674887689899999999999999 Q gi|254780853|r 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV--RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 (185) Q Consensus 100 G~vT~km~~~l~~~yeqmpePK~ViA~G~Ca~sGG~f~~sY~v~--~g~d~~iPVDvyVPGCPPrPeail~gl~~L~~ki 177 (185) |.+...+...+..+-+.-..-|.+..+|++..+|+-...-...+ .|...+ ..+.+-|-|+..+.+-+.+..+.++| T Consensus 70 ~~~~~~~~~~l~~~~~~~~~~k~~~~fgs~g~~~~a~~~~~~~l~~~G~~~v--~~~~~~~~~~de~~~~e~~~~~~k~l 147 (148) T d1vmea1 70 AEIHPLMRFTLLEIIDKANYEKPVLVFGVHGWAPSAERTAGELLKETKFRIL--SFTEIKGSNMDERKIEEAISLLKKEL 147 (148) T ss_dssp TEECHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCC-CCHHHHHHTSSCEEE--EEEEECSTTCCTHHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEE--EEEEEECCCCCHHHHHHHHHHHHHHC T ss_conf 8159627899999762464798799997178753069999999997699287--55788379998899999999999742 Q ss_pred H Q ss_conf 6 Q gi|254780853|r 178 R 178 (185) Q Consensus 178 ~ 178 (185) + T Consensus 148 ~ 148 (148) T d1vmea1 148 E 148 (148) T ss_dssp C T ss_pred C T ss_conf 9 No 7 >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Probab=64.45 E-value=4.7 Score=18.76 Aligned_cols=101 Identities=19% Similarity=0.265 Sum_probs=62.8 Q ss_pred CCCHHHCCEEECCCCC----CCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCEECCCCCCCC Q ss_conf 6786764848706822----060799714134556999999998468666199853556688634788722077222322 Q gi|254780853|r 76 RYDLERFGFAPRASPR----QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 (185) Q Consensus 76 ~yD~eRfG~~~~~sPR----qADvliVtG~vT~km~~~l~~~yeqmpePK~ViA~G~Ca~sGG~f~~sY~v~~g~d~~iP 151 (185) +.+-|++|+.+..++. .||+++++=+....-...++.+-+.+++-..++-+++ ++......-...... +-+. T Consensus 121 ~~~pEe~Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi~~I~~~l~~g~Iiid~ST--i~~~~~~~l~e~l~~--kgi~ 196 (242) T d2b0ja2 121 LVHPEDVGLKVTSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACT--IPTTKFAKIFKDLGR--EDLN 196 (242) T ss_dssp SSCGGGGTCEEESCHHHHHTTCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSS--SCHHHHHHHHHHTTC--TTSE T ss_pred CCCHHHCCCEEECCHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHCCCCCEEEECCC--CCHHHHHHHHHHCCC--CCCE T ss_conf 279888898897989999726886899511689999999999964899968996587--868999999986043--7988 Q ss_pred CEEECCCCCC------------CHHHHHHHHHHHHHHHHHH Q ss_conf 3067488768------------9899999999999999641 Q gi|254780853|r 152 VDIYVPGCPP------------TAEALIYGILLLQKKIRRV 180 (185) Q Consensus 152 VDvyVPGCPP------------rPeail~gl~~L~~ki~~~ 180 (185) +.-..|+++| ..+..++.+..|.+++.++ T Consensus 197 vi~~hp~a~pe~~g~~li~~~~aseE~iekv~elles~Gk~ 237 (242) T d2b0ja2 197 ITSYHPGCVPEMKGQVYIAEGYASEEAVNKLYEIGKIARGK 237 (242) T ss_dssp EEECBCSSCTTTCCCEEEEESSSCHHHHHHHHHHHHHHHSC T ss_pred EECCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCC T ss_conf 98788537676456369941778999999999999997997 No 8 >d1hcnb_ g.17.1.4 (B:) Gonadotropin B chain {Human (Homo sapiens) [TaxId: 9606]} Probab=27.00 E-value=20 Score=15.10 Aligned_cols=39 Identities=23% Similarity=0.334 Sum_probs=21.3 Q ss_pred EECCCCCCCCCCC----CCCCEECCCCCCCCCEEECCCCCCCH Q ss_conf 8535566886347----88722077222322306748876898 Q gi|254780853|r 125 SMGSCANGGGYYH----YSYSVVRGCDRIVPVDIYVPGCPPTA 163 (185) Q Consensus 125 A~G~Ca~sGG~f~----~sY~v~~g~d~~iPVDvyVPGCPPrP 163 (185) -.|-|-..--.|. .++-.+=.-+++.-.-+.+|||||.- T Consensus 33 C~G~C~T~dpv~~~~~~~~~Q~vCty~~~~y~tv~LpgCp~gV 75 (110) T d1hcnb_ 33 CAGYCPTMTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGV 75 (110) T ss_dssp EEEEEEECCCCBTTCSSCCCCEEEEEEEEEEEEEECTTCCSSC T ss_pred ECCEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCC T ss_conf 8617132574444767876677646687588999888977998 No 9 >d1xwdb1 g.17.1.4 (B:3-107) Follicle stimulating hormone, follitropin, beta chain {Human (Homo sapiens) [TaxId: 9606]} Probab=22.45 E-value=17 Score=15.49 Aligned_cols=17 Identities=35% Similarity=0.663 Sum_probs=13.2 Q ss_pred CCCCCCEEECCCCCCCH Q ss_conf 22322306748876898 Q gi|254780853|r 147 DRIVPVDIYVPGCPPTA 163 (185) Q Consensus 147 d~~iPVDvyVPGCPPrP 163 (185) +++.-.-+.+|||||.- T Consensus 52 ~~~~y~tv~LpgCp~gV 68 (105) T d1xwdb1 52 KELVYETVRVPGCAHHA 68 (105) T ss_dssp EEEEEEEEEECCBTTBC T ss_pred CCEEEEEEECCCCCCCC T ss_conf 87788999899966899 No 10 >d3bula2 c.23.6.1 (A:741-896) Methionine synthase, C-terminal domain {Escherichia coli [TaxId: 562]} Probab=19.16 E-value=28 Score=14.18 Aligned_cols=63 Identities=16% Similarity=0.194 Sum_probs=39.5 Q ss_pred CCCCCEEEEECCCCHHH---HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCEECCCCCCCCCEEECCCC Q ss_conf 22060799714134556---99999999846866619985355668863478872207722232230674887 Q gi|254780853|r 90 PRQSDVMIVAGTLTNKM---ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 (185) Q Consensus 90 PRqADvliVtG~vT~km---~~~l~~~yeqmpePK~ViA~G~Ca~sGG~f~~sY~v~~g~d~~iPVDvyVPGC 159 (185) -..+|++.++..+|..| ...+..+-++-+..+.++ | ||.+...+....+.+.++..|+|.+.. T Consensus 55 ~~~~d~i~lS~l~~~~~~~~~~~~~~l~~~g~~~~viv--G-----G~~~~~~~~~~~~~~~y~gad~ya~DA 120 (156) T d3bula2 55 EVNADLIGLSGLITPSLDEMVNVAKEMERQGFTIPLLI--G-----GATTSKAHTAVKIEQNYSGPTVYVQNA 120 (156) T ss_dssp HHTCSEEEEECCSTHHHHHHHHHHHHHHHTTCCSCEEE--E-----STTCCHHHHHHHTGGGCSSCEEECCSH T ss_pred HHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEE--E-----CCCCCCHHHHHHHCCCCCCCEEECCCH T ss_conf 63998899964542326889999999973256623898--5-----044550577765313556660123677 Done!