RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780853|ref|YP_003065266.1| NADH dehydrogenase subunit B
[Candidatus Liberibacter asiaticus str. psy62]
(185 letters)
>gnl|CDD|180557 PRK06411, PRK06411, NADH dehydrogenase subunit B; Validated.
Length = 183
Score = 308 bits (791), Expect = 6e-85
Identities = 109/157 (69%), Positives = 127/157 (80%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
D + E +KG ++T++D LV WAR SL +TFGLACCA+EMM A RYDL+RF
Sbjct: 5 DEIVTMGLEEELNKGVVLTTLDDLVNWARKNSLWPLTFGLACCAIEMMAAGTSRYDLDRF 64
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
G RASPRQ+D+MIVAGTLTNKMA ALRR+YDQMPEP++VISMGSCAN GG YHYSYSV
Sbjct: 65 GMVFRASPRQADLMIVAGTLTNKMAPALRRLYDQMPEPKWVISMGSCANSGGMYHYSYSV 124
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
V+G DRIVPVD+YVPGCPP EAL+YGIL LQKKIR+
Sbjct: 125 VQGVDRIVPVDVYVPGCPPRPEALLYGILKLQKKIRQ 161
>gnl|CDD|162625 TIGR01957, nuoB_fam, NADH-quinone oxidoreductase, B subunit. This
model describes the B chain of complexes that resemble
NADH-quinone oxidoreductases. The electron acceptor is a
quinone, ubiquinone, in mitochondria and most bacteria,
including Escherichia coli, where the recommended gene
symbol is nuoB. The quinone is plastoquinone in
Synechocystis (where the chain is designated K) and in
chloroplast, where NADH may be replaced by NADPH. In the
methanogenic archaeal genus Methanosarcina, NADH is
replaced by F420H2.
Length = 145
Score = 264 bits (677), Expect = 9e-72
Identities = 99/144 (68%), Positives = 120/144 (83%), Gaps = 1/144 (0%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG-FAPRASPRQSDV 95
G L+T+VD+L+ W R+ SL +TFGLACCA+EMM RYDL+RFG RASPRQ+DV
Sbjct: 1 GVLLTTVDKLLNWGRSNSLWPLTFGLACCAIEMMATGASRYDLDRFGSEVFRASPRQADV 60
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
MIVAGT+T KMA ALRR+YDQMPEP++VISMG+CAN GG +H SYSVV+G DRIVPVD+Y
Sbjct: 61 MIVAGTVTKKMAPALRRLYDQMPEPKWVISMGACANSGGMFHTSYSVVQGVDRIVPVDVY 120
Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
+PGCPP EALIYG++ LQKKI+R
Sbjct: 121 IPGCPPRPEALIYGLIKLQKKIKR 144
>gnl|CDD|173274 PRK14813, PRK14813, NADH dehydrogenase subunit B; Provisional.
Length = 189
Score = 212 bits (540), Expect = 7e-56
Identities = 91/151 (60%), Positives = 117/151 (77%), Gaps = 1/151 (0%)
Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
+ + I++ LVTSVD ++ WAR SL M FGLACCA+EMM + YDLERFG PR+
Sbjct: 4 LDAGISNHNVLVTSVDNVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63
Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG-YYHYSYSVVRGCD 147
SPRQSD+MIVAGT+T KMA + R+Y+QMPEPRYV+SMGSC+N GG Y+ + Y V++G D
Sbjct: 64 SPRQSDLMIVAGTVTMKMAERVVRLYEQMPEPRYVLSMGSCSNCGGPYWEHGYHVLKGVD 123
Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
RI+PVD+YVPGCPP EALI G++ +Q+ IR
Sbjct: 124 RIIPVDVYVPGCPPRPEALIGGLMKVQELIR 154
>gnl|CDD|173279 PRK14818, PRK14818, NADH dehydrogenase subunit B; Provisional.
Length = 173
Score = 209 bits (532), Expect = 4e-55
Identities = 83/141 (58%), Positives = 104/141 (73%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
+ +D L+ AR SL ++TFGLACC +E+MQ PR D+ RFG PRASPRQ+D MI
Sbjct: 16 LHTSQLDNLINLARASSLYYLTFGLACCGIELMQTGGPRADVMRFGAIPRASPRQADFMI 75
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
VAGTLT KMA R +YDQMPEP+YVISMGSC+N GG + YSV +G D+++PVD+YVP
Sbjct: 76 VAGTLTYKMAERARLLYDQMPEPKYVISMGSCSNCGGLFQLGYSVCKGVDKVIPVDVYVP 135
Query: 158 GCPPTAEALIYGILLLQKKIR 178
GCPP EAL G+L LQ+ +R
Sbjct: 136 GCPPRPEALTEGLLRLQEIVR 156
>gnl|CDD|173280 PRK14819, PRK14819, NADH dehydrogenase subunit B; Provisional.
Length = 264
Score = 199 bits (508), Expect = 3e-52
Identities = 83/157 (52%), Positives = 112/157 (71%), Gaps = 1/157 (0%)
Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
+D E+ +G L+T+V++ W R S+ M FGLACCA+EMM + RYDL RFG
Sbjct: 2 SDLDPTQLELEKQGVLLTTVNRFYNWGRRSSVWPMAFGLACCAIEMMATGLSRYDLARFG 61
Query: 84 FAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
RASPRQ+D+MIVAGT+T KMA + R+Y+QMPEPRYVISMG+CA GG + Y+V
Sbjct: 62 AELFRASPRQADLMIVAGTVTKKMAPQVVRLYNQMPEPRYVISMGACATSGGPFRDGYNV 121
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
+RG D ++PVD+Y+PGCPP EAL++ ++ LQK+I
Sbjct: 122 LRGIDLLIPVDVYIPGCPPRPEALLHALMTLQKQIDA 158
>gnl|CDD|183955 PRK13292, PRK13292, trifunctional NADH dehydrogenase I subunit
B/C/D; Provisional.
Length = 788
Score = 197 bits (502), Expect = 2e-51
Identities = 79/149 (53%), Positives = 109/149 (73%), Gaps = 2/149 (1%)
Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASP 90
E + L+ S+D L+ W R SL M FGL+CC VEMM + RYD+ RFG R +P
Sbjct: 1 ETIPENILLASLDDLINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDISRFGAEVLRGTP 60
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
R++D+M++AGT+ KMA ++ R+Y+QM EP++VISMGSCAN GG Y YSVV+G ++I+
Sbjct: 61 READLMVIAGTVFKKMAPSILRLYEQMAEPKWVISMGSCANSGGMYDV-YSVVQGVNQIL 119
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
PVD+Y+PGCPP EA + G++LLQ+KIRR
Sbjct: 120 PVDVYIPGCPPRPEAFLQGLMLLQEKIRR 148
>gnl|CDD|184832 PRK14815, PRK14815, NADH dehydrogenase subunit B; Provisional.
Length = 183
Score = 183 bits (466), Expect = 2e-47
Identities = 80/144 (55%), Positives = 107/144 (74%), Gaps = 2/144 (1%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDV 95
+VT++D + W R SL M GLACCA+E+M + R+D+ RFG R SPRQ+DV
Sbjct: 17 NVVVTTLDAAINWIRKNSLWPMPMGLACCAIELMAVACSRFDISRFGAEVMRFSPRQADV 76
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
MIVAGT+T KMA A+RR+YDQMPEP++VI+MG+CA+ GG Y SYSV++G DRI+PVD+Y
Sbjct: 77 MIVAGTVTYKMALAVRRIYDQMPEPKWVIAMGACASSGGMYR-SYSVLQGVDRILPVDVY 135
Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
+ GCPP EA++ ++ LQKKI
Sbjct: 136 ISGCPPRPEAILDALIKLQKKIDT 159
>gnl|CDD|173277 PRK14816, PRK14816, NADH dehydrogenase subunit B; Provisional.
Length = 182
Score = 181 bits (460), Expect = 1e-46
Identities = 72/141 (51%), Positives = 101/141 (71%), Gaps = 1/141 (0%)
Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMI 97
V +D L+ W R+ SL +TF +CC +E M RYD+ RFGF RASPRQ+D+++
Sbjct: 27 FVGVLDDLINWGRSNSLWPLTFATSCCGIEFMALGAARYDMARFGFEVARASPRQADMIM 86
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
V GT+TNKMA L+R+YDQM +P+YVI++G CA GG + SY V+ G D+I+PVD+Y+P
Sbjct: 87 VCGTITNKMAPVLKRLYDQMADPKYVIAVGGCAVSGGPFKKSYHVLNGVDKILPVDVYIP 146
Query: 158 GCPPTAEALIYGILLLQKKIR 178
GCPP EA YG++ LQ+K++
Sbjct: 147 GCPPRPEAFYYGMMQLQRKVK 167
>gnl|CDD|173278 PRK14817, PRK14817, NADH dehydrogenase subunit B; Provisional.
Length = 181
Score = 160 bits (405), Expect = 2e-40
Identities = 73/143 (51%), Positives = 101/143 (70%), Gaps = 2/143 (1%)
Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSD 94
+GFL V + + WAR SL F ACC +E M + RYD +RFG A PR SPRQ+D
Sbjct: 18 EGFLQGLVSKSLGWARKYSLFTYPFVTACCGMEYMTMASARYDSDRFGAAMPRFSPRQAD 77
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
+++V GT+ K A L+RVY+QM +P++V++ G CA+ GG+Y +Y+ V+G DRI+PVD+
Sbjct: 78 LLMVVGTVNCKQAPILQRVYEQMADPKWVMAFGVCASSGGFYD-NYATVQGIDRIIPVDV 136
Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
YVPGCPP E ++ GI+LLQKKI
Sbjct: 137 YVPGCPPRPEQVLDGIMLLQKKI 159
>gnl|CDD|173275 PRK14814, PRK14814, NADH dehydrogenase subunit B; Provisional.
Length = 186
Score = 155 bits (394), Expect = 4e-39
Identities = 70/159 (44%), Positives = 107/159 (67%), Gaps = 2/159 (1%)
Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
+D S+ + F + +++ ++ W R+ SL F ACC +E M + YD+ RFG
Sbjct: 4 SDLSKKPGQALGDMFQLGNLESVIQWGRSFSLWPYPFATACCGIEYMSTACSDYDIARFG 63
Query: 84 FA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
P SPRQ+D+++V GT+T KMA LR++YDQM EP++VIS+G+CA+ GG +H +Y V
Sbjct: 64 AERPSFSPRQADMILVLGTITYKMAPVLRQIYDQMAEPKFVISVGACASSGGMFH-TYGV 122
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
++G DRI+PVD+YVPGCPP EA++ ++ LQ K++ G
Sbjct: 123 LQGVDRILPVDVYVPGCPPRPEAILDALVKLQTKLKTQG 161
>gnl|CDD|184833 PRK14820, PRK14820, NADH dehydrogenase subunit B; Provisional.
Length = 180
Score = 154 bits (390), Expect = 2e-38
Identities = 69/153 (45%), Positives = 101/153 (66%), Gaps = 7/153 (4%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPR 91
+GF TS+D ++ AR SL + F +CC +E M YDL RFG P SPR
Sbjct: 13 YEGEGFFATSLDSVIGLARKNSLWPLPFATSCCGIEFMATMASHYDLARFGSERPSFSPR 72
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
Q+D+++V GT+ KMA L++VY QM EPR+V+++G+CA+ GG + +YSV++G DRI+P
Sbjct: 73 QADMLMVMGTIAKKMAPVLKQVYLQMAEPRWVVAVGACASSGGIFD-TYSVLQGIDRIIP 131
Query: 152 VDIYVPGCPPTAEALIYGILLLQ-----KKIRR 179
VD+YVPGCPP E +I G++ +Q + +RR
Sbjct: 132 VDVYVPGCPPRPEQIIDGVMRVQELVKNESLRR 164
>gnl|CDD|132337 TIGR03294, FrhG, coenzyme F420 hydrogenase, subunit gamma. This
model represents that clade of F420-dependent
hydrogenases (FRH) beta subunits found exclusively and
universally in methanogenic archaea. This protein
contains two 4Fe-4S cluster binding domains (pfam00037)
and scores above the trusted cutoff to model pfam01058
for the "NADH ubiquinone oxidoreductase, 20 Kd subunit"
family.
Length = 228
Score = 37.9 bits (88), Expect = 0.001
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 17/93 (18%)
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP-- 151
DV +V G++ + +L + + + + V+++G+CA G + YS RG + P
Sbjct: 52 DVALVEGSVCLQDEHSLEEIKELREKAKVVVALGACAATGNFTRYS----RGGQQAQPQH 107
Query: 152 -----------VDIYVPGCPPTAEALIYGILLL 173
VD+ +PGCPP+ EA+ + L
Sbjct: 108 ESFVPITDVIDVDLAIPGCPPSPEAIRNVCVAL 140
>gnl|CDD|182719 PRK10774, PRK10774, cell division protein FtsW; Provisional.
Length = 404
Score = 31.7 bits (72), Expect = 0.13
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Query: 44 DQLVTWARTGSLMWMTFGLACCAVEMM-QASMP---RYDLERFGFAPR 87
D L+ + RT L+W+TFGLA M+ ASMP R + F FA R
Sbjct: 29 DSLIMYDRT--LLWLTFGLAAIGFVMVTSASMPVGQRLANDPFLFAKR 74
>gnl|CDD|184899 PRK14906, PRK14906, DNA-directed RNA polymerase subunit beta'/alpha
domain fusion protein; Provisional.
Length = 1460
Score = 29.1 bits (65), Expect = 0.64
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 97 IVAGTLTNKMASALRRVYDQMPEPR-YVISMGSCANGGGYYHYSYSVVRG 145
+ +L + LR + + +P+P+ + + GG Y SY +RG
Sbjct: 1254 PTSKSLPDWAPEELRDIEELLPQPQDWSLGDDYLGYGGVYSKNSYRGLRG 1303
>gnl|CDD|169983 PRK09579, PRK09579, multidrug efflux protein; Reviewed.
Length = 1017
Score = 27.9 bits (62), Expect = 1.7
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
+N IISG S+ + +I+ E +GF + + GS +W+TFGLA
Sbjct: 796 LNSAIISGFPIVSMGEAIETVQQIAREEAPEGFAFDYAGASRQYVQEGSALWVTFGLA 853
>gnl|CDD|178618 PLN03069, PLN03069, magnesiumprotoporphyrin-IX chelatase subunit H;
Provisional.
Length = 1220
Score = 27.1 bits (60), Expect = 2.6
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 148 RIVPVDIYVPGCPPTAE 164
R++P ++V G PP+AE
Sbjct: 751 RLLPCGLHVIGEPPSAE 767
>gnl|CDD|183556 PRK12493, PRK12493, magnesium chelatase subunit H; Provisional.
Length = 1310
Score = 27.2 bits (61), Expect = 2.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 147 DRIVPVDIYVPGCPPTAEALI 167
R++P ++V G PPTAE I
Sbjct: 738 SRLIPCGLHVIGKPPTAEEAI 758
>gnl|CDD|129789 TIGR00706, SppA_dom, signal peptide peptidase SppA, 36K type. The
member of this family from Bacillus subtilis was shown
to have properties consistent with a role in degrading
signal peptides after cleavage from precursor proteins,
although it was not demonstrated conclusively.
Length = 207
Score = 26.6 bits (59), Expect = 4.4
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
L+++ + P V SMG A GGYY + D IV
Sbjct: 54 KLKKLKAKKP---VVASMGGVAASGGYY-----IAMAADEIV 87
>gnl|CDD|162282 TIGR01279, DPOR_bchN, light-independent protochlorophyllide
reductase, N subunit. This enzyme describes the N
subunit of the dark form protochlorophyllide reductase,
a nitrogenase-like enzyme involved in
bacteriochlorophyll biosynthesis. This subunit shows
homology to the nitrogenase molybdenum-iron protein
NifN.
Length = 407
Score = 26.3 bits (58), Expect = 4.7
Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 19/112 (16%)
Query: 7 NQKIISGQSSCSLEKVDADFSRISSEI-THKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
N +I SSC+ E + D ++ + T+ G V S + TF
Sbjct: 84 NPSVIFLLSSCTPEVIKMDLEGLAERLSTNFGVPVLFA--------PASGLDYTFTQGED 135
Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
V + A +P F P A + +++ G++ + +A LR Q+
Sbjct: 136 TV--LAALVP--------FCPEAPASEQRALVLVGSVNDIVADQLRLELKQL 177
>gnl|CDD|177889 PLN02246, PLN02246, 4-coumarate--CoA ligase.
Length = 537
Score = 25.7 bits (57), Expect = 6.9
Identities = 11/15 (73%), Positives = 12/15 (80%), Gaps = 1/15 (6%)
Query: 33 ITHKGFLVTSVDQLV 47
+THKG LVTSV Q V
Sbjct: 199 LTHKG-LVTSVAQQV 212
>gnl|CDD|183431 PRK12315, PRK12315, 1-deoxy-D-xylulose-5-phosphate synthase;
Provisional.
Length = 581
Score = 25.7 bits (57), Expect = 7.0
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 20 EKVDADFSRISSEITHKG 37
VD D+S + E+T G
Sbjct: 443 PTVDTDYSTLKYEVTKAG 460
>gnl|CDD|181601 PRK08978, PRK08978, acetolactate synthase 2 catalytic subunit;
Reviewed.
Length = 548
Score = 25.6 bits (57), Expect = 7.7
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 11 ISGQSSCSLEKVDA----DFSRISSEITHKGFLVTSVDQLV 47
I+GQ S L DA D +S T FLV S+++L
Sbjct: 95 ITGQVSSPLIGTDAFQEIDVLGLSLACTKHSFLVQSLEELP 135
>gnl|CDD|178170 PLN02555, PLN02555, limonoid glucosyltransferase.
Length = 480
Score = 25.5 bits (56), Expect = 8.1
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVP-VDIYVPGCP 160
P V+ + SCA YYHY + +V P +D+ +P P
Sbjct: 139 PSAVLWVQSCACFSAYYHYYHGLVPFPTETEPEIDVQLPCMP 180
>gnl|CDD|114771 pfam06069, PerC, PerC transcriptional activator. PerC is a
transcriptional activator of EaeA/BfpA expression in
enteropathogenic bacteria.
Length = 90
Score = 25.6 bits (56), Expect = 8.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVY 114
LE GF RA+ R ++VM++ T + +A RR
Sbjct: 10 LEAKGFYRRAADRWAEVMVLVETDAERKWAAQRRAE 45
>gnl|CDD|181360 PRK08294, PRK08294, phenol 2-monooxygenase; Provisional.
Length = 634
Score = 25.3 bits (56), Expect = 8.9
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 9/27 (33%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPR 87
G+AC +EM QA FGFA R
Sbjct: 76 GIACRTMEMFQA---------FGFAER 93
>gnl|CDD|182581 PRK10600, PRK10600, nitrate/nitrite sensor protein NarX;
Provisional.
Length = 569
Score = 25.4 bits (56), Expect = 9.1
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYD 115
F RA+ D M + GT N M++ L Y
Sbjct: 168 FTQRANISGRDEMAMLGTALNNMSAELAESYA 199
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.323 0.136 0.417
Gapped
Lambda K H
0.267 0.0618 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,020,090
Number of extensions: 182493
Number of successful extensions: 484
Number of sequences better than 10.0: 1
Number of HSP's gapped: 469
Number of HSP's successfully gapped: 32
Length of query: 185
Length of database: 5,994,473
Length adjustment: 88
Effective length of query: 97
Effective length of database: 4,092,969
Effective search space: 397017993
Effective search space used: 397017993
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 54 (24.8 bits)