254780854
NADH dehydrogenase subunit C
GeneID in NCBI database: | 8209869 | Locus tag: | CLIBASIA_03745 |
Protein GI in NCBI database: | 254780854 | Protein Accession: | YP_003065267.1 |
Gene range: | +(823499, 824107) | Protein Length: | 202aa |
Gene description: | NADH dehydrogenase subunit C | ||
COG prediction: | [C] NADH:ubiquinone oxidoreductase 27 kD subunit | ||
KEGG prediction: | nuoC; NADH dehydrogenase subunit C (EC:1.6.99.5); K00332 NADH dehydrogenase I subunit C [EC:1.6.5.3] | ||
SEED prediction: | NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) | ||
Pathway involved in KEGG: | Oxidative phosphorylation [PATH:las00190] | ||
Subsystem involved in SEED: | Respiratory Complex I | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
Identity | Alignment graph | Length | Definition | E-value | |
Target | 202 | NADH dehydrogenase subunit C [Candidatus Liberibacter a | |||
254781103 | 598 | penicillin-binding transmembrane protein [Candidat | 0.029 |
>gi|254781103|ref|YP_003065516.1| penicillin-binding transmembrane protein [Candidatus Liberibacter asiaticus str. psy62] Length = 598 | Back alignment |
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Score = 30.0 bits (66), Expect = 0.029, Method: Compositional matrix adjust. Identities = 12/34 (35%), Positives = 20/34 (58%) Query: 21 RFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCF 54 ++ SVG + L+V G+++S+ S DPH F Sbjct: 278 KYNAESVGTVILNVSTGEVISMVSIPDYDPHEAF 311 |
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 202 | NADH dehydrogenase subunit C [Candidatus Liberibacter a | |||
315122724 | 198 | NADH dehydrogenase subunit C [Candidatus Liberibacter s | 1 | 2e-86 | |
319782983 | 200 | NADH (or F420H2) dehydrogenase subunit C [Mesorhizobium | 1 | 2e-64 | |
222085577 | 200 | NADH-ubiquinone oxidoreductase chain C protein [Agrobac | 1 | 3e-64 | |
163759541 | 200 | NADH-ubiquinone oxidoreductase chain C protein [Hoeflea | 1 | 5e-64 | |
222148276 | 200 | NADH dehydrogenase subunit C [Agrobacterium vitis S4] L | 1 | 8e-64 | |
260462232 | 200 | NADH (or F420H2) dehydrogenase, subunit C [Mesorhizobiu | 1 | 1e-63 | |
190891287 | 200 | NADH-ubiquinone oxidoreductase, chain C [Rhizobium etli | 1 | 2e-63 | |
150396113 | 201 | NADH dehydrogenase subunit C [Sinorhizobium medicae WSM | 1 | 2e-63 | |
116251468 | 200 | NADH dehydrogenase subunit C [Rhizobium leguminosarum b | 1 | 2e-63 | |
86357238 | 200 | NADH dehydrogenase subunit C [Rhizobium etli CFN 42] Le | 1 | 2e-63 |
>gi|315122724|ref|YP_004063213.1| NADH dehydrogenase subunit C [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 198 | Back alignment and organism information |
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Score = 322 bits (824), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 157/195 (80%), Positives = 176/195 (90%), Gaps = 1/195 (0%) Query: 5 IEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD 64 +ED+GDYIVNSF SVR +NSVGELSLDVDCGDL+SLC FLRDD +C FVNI+DLCGVD Sbjct: 1 MEDIGDYIVNSFGRSVRSTINSVGELSLDVDCGDLLSLCYFLRDDSNCRFVNIVDLCGVD 60 Query: 65 FLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFF 124 FLSRS+RFDVVYHFLSPKYN R+RVK+AV+EG S+PS+V +YP A+WFEREV DMYGI F Sbjct: 61 FLSRSSRFDVVYHFLSPKYNCRVRVKVAVSEGDSIPSMVEVYPAANWFEREVLDMYGIKF 120 Query: 125 EGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSP 184 EGHPDLRRILTDYGFEGHPLRKDFPVTGFVEL YDDK KKVVY PVELMQE+RDYDFLSP Sbjct: 121 EGHPDLRRILTDYGFEGHPLRKDFPVTGFVELRYDDKAKKVVYSPVELMQEYRDYDFLSP 180 Query: 185 WEGVNSLFAKEDSKD 199 WEG + LFA +DS++ Sbjct: 181 WEG-SPLFADKDSEN 194 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|319782983|ref|YP_004142459.1| NADH (or F420H2) dehydrogenase subunit C [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 200 | Back alignment and organism information |
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>gi|222085577|ref|YP_002544107.1| NADH-ubiquinone oxidoreductase chain C protein [Agrobacterium radiobacter K84] Length = 200 | Back alignment and organism information |
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>gi|163759541|ref|ZP_02166626.1| NADH-ubiquinone oxidoreductase chain C protein [Hoeflea phototrophica DFL-43] Length = 200 | Back alignment and organism information |
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>gi|222148276|ref|YP_002549233.1| NADH dehydrogenase subunit C [Agrobacterium vitis S4] Length = 200 | Back alignment and organism information |
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>gi|260462232|ref|ZP_05810476.1| NADH (or F420H2) dehydrogenase, subunit C [Mesorhizobium opportunistum WSM2075] Length = 200 | Back alignment and organism information |
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>gi|190891287|ref|YP_001977829.1| NADH-ubiquinone oxidoreductase, chain C [Rhizobium etli CIAT 652] Length = 200 | Back alignment and organism information |
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>gi|150396113|ref|YP_001326580.1| NADH dehydrogenase subunit C [Sinorhizobium medicae WSM419] Length = 201 | Back alignment and organism information |
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>gi|116251468|ref|YP_767306.1| NADH dehydrogenase subunit C [Rhizobium leguminosarum bv. viciae 3841] Length = 200 | Back alignment and organism information |
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>gi|86357238|ref|YP_469130.1| NADH dehydrogenase subunit C [Rhizobium etli CFN 42] Length = 200 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 202 | NADH dehydrogenase subunit C [Candidatus Liberibacter a | ||
PRK06074 | 189 | PRK06074, PRK06074, NADH dehydrogenase subunit C; Provi | 6e-69 | |
COG0852 | 176 | COG0852, NuoC, NADH:ubiquinone oxidoreductase 27 kD sub | 4e-46 | |
PRK08491 | 263 | PRK08491, PRK08491, NADH dehydrogenase subunit C; Provi | 6e-24 | |
KOG1713 | 191 | KOG1713, KOG1713, KOG1713, NADH-ubiquinone oxidoreducta | 2e-50 | |
TIGR01961 | 121 | TIGR01961, NuoC_fam, NADH (or F420H2) dehydrogenase, su | 8e-44 | |
pfam00329 | 103 | pfam00329, Complex1_30kDa, Respiratory-chain NADH dehyd | 1e-33 | |
PRK11742 | 575 | PRK11742, PRK11742, bifunctional NADH:ubiquinone oxidor | 2e-33 | |
PRK07785 | 235 | PRK07785, PRK07785, NADH dehydrogenase subunit C; Provi | 2e-30 | |
PRK13292 | 788 | PRK13292, PRK13292, trifunctional NADH dehydrogenase I | 7e-25 | |
PRK07735 | 430 | PRK07735, PRK07735, NADH dehydrogenase subunit C; Valid | 3e-21 | |
PRK12494 | 172 | PRK12494, PRK12494, NADH dehydrogenase subunit J; Provi | 5e-17 | |
COG3262 | 165 | COG3262, HycE, Ni,Fe-hydrogenase III component G [Energ | 4e-13 | |
CHL00012 | 158 | CHL00012, ndhJ, NADH dehydrogenase subunit J | 1e-12 |
>gnl|CDD|180384 PRK06074, PRK06074, NADH dehydrogenase subunit C; Provisional | Back alignment and domain information |
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>gnl|CDD|31193 COG0852, NuoC, NADH:ubiquinone oxidoreductase 27 kD subunit [Energy production and conversion] | Back alignment and domain information |
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>gnl|CDD|181449 PRK08491, PRK08491, NADH dehydrogenase subunit C; Provisional | Back alignment and domain information |
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>gnl|CDD|36925 KOG1713, KOG1713, KOG1713, NADH-ubiquinone oxidoreductase, NDUFS3/30 kDa subunit [Energy production and conversion] | Back alignment and domain information |
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>gnl|CDD|162626 TIGR01961, NuoC_fam, NADH (or F420H2) dehydrogenase, subunit C | Back alignment and domain information |
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>gnl|CDD|144062 pfam00329, Complex1_30kDa, Respiratory-chain NADH dehydrogenase, 30 Kd subunit | Back alignment and domain information |
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>gnl|CDD|183294 PRK11742, PRK11742, bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional | Back alignment and domain information |
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>gnl|CDD|181115 PRK07785, PRK07785, NADH dehydrogenase subunit C; Provisional | Back alignment and domain information |
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>gnl|CDD|183955 PRK13292, PRK13292, trifunctional NADH dehydrogenase I subunit B/C/D; Provisional | Back alignment and domain information |
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>gnl|CDD|181096 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated | Back alignment and domain information |
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>gnl|CDD|183557 PRK12494, PRK12494, NADH dehydrogenase subunit J; Provisional | Back alignment and domain information |
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>gnl|CDD|33073 COG3262, HycE, Ni,Fe-hydrogenase III component G [Energy production and conversion] | Back alignment and domain information |
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>gnl|CDD|176955 CHL00012, ndhJ, NADH dehydrogenase subunit J | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 202 | NADH dehydrogenase subunit C [Candidatus Liberibacter a | ||
PRK06074 | 190 | NADH dehydrogenase subunit C; Provisional | 100.0 | |
KOG1713 | 191 | consensus | 100.0 | |
COG0852 | 176 | NuoC NADH:ubiquinone oxidoreductase 27 kD subunit [Ener | 100.0 | |
PRK07785 | 238 | NADH dehydrogenase subunit C; Provisional | 100.0 | |
TIGR01961 | 136 | NuoC_fam NADH (or F420H2) dehydrogenase, subunit C; Int | 100.0 | |
PRK08491 | 263 | NADH dehydrogenase subunit C; Provisional | 100.0 | |
PRK11742 | 575 | bifunctional NADH:ubiquinone oxidoreductase subunit C/D | 100.0 | |
PRK13292 | 784 | trifunctional NADH dehydrogenase I subunit B/C/D; Provi | 100.0 | |
CHL00012 | 158 | ndhJ NADH dehydrogenase subunit J | 100.0 | |
PRK12494 | 172 | NADH dehydrogenase subunit J; Provisional | 100.0 | |
PRK07735 | 420 | NADH dehydrogenase subunit C; Validated | 100.0 | |
COG3262 | 165 | HycE Ni,Fe-hydrogenase III component G [Energy producti | 99.95 | |
pfam00329 | 103 | Complex1_30kDa Respiratory-chain NADH dehydrogenase, 30 | 100.0 |
>PRK06074 NADH dehydrogenase subunit C; Provisional | Back alignment and domain information |
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>KOG1713 consensus | Back alignment and domain information |
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>COG0852 NuoC NADH:ubiquinone oxidoreductase 27 kD subunit [Energy production and conversion] | Back alignment and domain information |
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>PRK07785 NADH dehydrogenase subunit C; Provisional | Back alignment and domain information |
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>TIGR01961 NuoC_fam NADH (or F420H2) dehydrogenase, subunit C; InterPro: IPR010218 This entry describes the C subunit of the NADH dehydrogenase complex I in bacteria, as well as many instances of the corresponding mitochondrial subunit (NADH dehydrogenase subunit 9) and of the F420H2 dehydrogenase in Methanosarcina | Back alignment and domain information |
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>PRK08491 NADH dehydrogenase subunit C; Provisional | Back alignment and domain information |
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>PRK11742 bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional | Back alignment and domain information |
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>PRK13292 trifunctional NADH dehydrogenase I subunit B/C/D; Provisional | Back alignment and domain information |
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>CHL00012 ndhJ NADH dehydrogenase subunit J | Back alignment and domain information |
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>PRK12494 NADH dehydrogenase subunit J; Provisional | Back alignment and domain information |
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>PRK07735 NADH dehydrogenase subunit C; Validated | Back alignment and domain information |
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>COG3262 HycE Ni,Fe-hydrogenase III component G [Energy production and conversion] | Back alignment and domain information |
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>pfam00329 Complex1_30kDa Respiratory-chain NADH dehydrogenase, 30 Kd subunit | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 202 | NADH dehydrogenase subunit C [Candidatus Liberibacter a | ||
3mcr_A | 213 | Crystal Structure Of Nadh Dehydrogenase Subunit C ( | 2e-20 | |
2fug_5 | 207 | Crystal Structure Of The Hydrophilic Domain Of Resp | 2e-18 |
>gi|295982538|pdb|3MCR|A Chain A, Crystal Structure Of Nadh Dehydrogenase Subunit C (Tfu_2693) Thermobifida Fusca Yx-Er1 At 2.65 A Resolution Length = 213 | Back alignment and structure |
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 5/132 (3%) Query: 6 EDLGDYIVNS---FSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62 + L + + ++ V GE++ V L+ + + LRDDP F + + G Sbjct: 82 DALERSLKEIGTPYDTAISRVVVDRGEITFHVQREHLLDVATRLRDDPALRFELCLGVTG 141 Query: 63 VDFLSRS-NRFDVVYHFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMY 120 V + N VY S +N +R++++ + +PSIV +YP DW ERE WD + Sbjct: 142 VHYPEDEGNELHAVYALRSITHNYEIRLEVSCPDSDPHIPSIVSVYPTNDWHEREAWDFF 201 Query: 121 GIFFEGHPDLRR 132 GI F+GHP L R Sbjct: 202 GIIFDGHPALTR 213 |
gi|90109658|pdb|2FUG|5 Chain 5, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus Length = 207 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 202 | NADH dehydrogenase subunit C [Candidatus Liberibacter a | ||
3mcr_A | 213 | NADH dehydrogenase, subunit C; structural genomics, joi | 6e-36 | |
3i9v_5 | 207 | NADH-quinone oxidoreductase subunit 5; electron transpo | 2e-32 |
>3mcr_A NADH dehydrogenase, subunit C; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.65A {Thermobifida fusca} Length = 213 | Back alignment and structure |
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Score = 145 bits (367), Expect = 6e-36 Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 2/130 (1%) Query: 5 IEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD 64 +E I + ++ V GE++ V L+ + + LRDDP F + + GV Sbjct: 84 LERSLKEIGTPYDTAISRVVVDRGEITFHVQREHLLDVATRLRDDPALRFELCLGVTGVH 143 Query: 65 FLSR-SNRFDVVYHFLSPKYNRRLRVKIAVAEGK-SVPSIVGIYPGADWFEREVWDMYGI 122 + N VY S +N +R++++ + +PSIV +YP DW ERE WD +GI Sbjct: 144 YPEDEGNELHAVYALRSITHNYEIRLEVSCPDSDPHIPSIVSVYPTNDWHEREAWDFFGI 203 Query: 123 FFEGHPDLRR 132 F+GHP L R Sbjct: 204 IFDGHPALTR 213 |
>3i9v_5 NADH-quinone oxidoreductase subunit 5; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_5* 3iam_5* 3ias_5* Length = 207 | Back alignment and structure |
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Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 202 | NADH dehydrogenase subunit C [Candidatus Liberibacter a | ||
3i9v_5 | 207 | NADH-quinone oxidoreductase subunit 5; electron transpo | 100.0 | |
3mcr_A | 213 | NADH dehydrogenase, subunit C; structural genomics, joi | 100.0 |
>3i9v_5 NADH-quinone oxidoreductase subunit 5; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_5* 3iam_5* 3ias_5* 3m9s_5* | Back alignment and structure |
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Probab=100.00 E-value=0 Score=406.29 Aligned_cols=177 Identities=32% Similarity=0.554 Sum_probs=157.4 Q ss_pred HHHHHHHHCCCCEEEEEEECCCEEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCC----CCCCEEEEEEEEECC- Q ss_conf 999999861531145798479599998689899999998718789801475132568877----778579999966157- Q gi|254780854|r 8 LGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLS----RSNRFDVVYHFLSPK- 82 (202) Q Consensus 8 L~~~L~~~l~~~I~~~~~~~~el~i~V~~~~l~~vl~~LKdd~~~~F~~LiDItaVDyp~----~~~RFeVvY~LlS~~- 82 (202) |.+.|++.+...+.......|+++|.|+++++.+++++||+ ++|++|+|||||||++ +++||+|||||+|++ T Consensus 3 le~~l~e~~~~~~~~e~~~~g~l~i~V~~e~l~~v~~~Lk~---~gf~~L~dit~vD~~~~~~~~~~rf~vvY~l~S~~~ 79 (207) T 3i9v_5 3 LERVLEEARAKGYPIEDNGLGNLWVVLPRERFKEEMAHYKA---MGFNFLADIVGLDYLTYPDPRPERFAVVYELVSLPG 79 (207) T ss_dssp THHHHHHHHHTTCCCCBCTTSCBEEECCHHHHHHHHHHHHH---TTCCCEEEEEEEECTTCSSCCSSSEEEEEEECCCTT T ss_pred HHHHHHHHHHCCCCEEECCCCCEEEEECHHHHHHHHHHHHH---CCCCCEEEEEEEECCCCCCCCCCEEEEEEEEECCCC T ss_conf 89999986643672002458838999839999999999986---899928788848278776787875899999744655 Q ss_pred ----CCCEEEEEEEECCC-CEEECCCCCEECCCCEECCCHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCC----CCC Q ss_conf ----52059982120578-501012233025531011210113827356798767788998987871133778----984 Q gi|254780854|r 83 ----YNRRLRVKIAVAEG-KSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPV----TGF 153 (202) Q Consensus 83 ----~n~ri~Vk~~v~e~-~~vpSi~~i~p~A~W~ERE~~DmfGI~F~gHPdlRRiL~d~~feGhPLRKDFPl----tG~ 153 (202) .|.||+||+.++++ +.||||++|||||||+|||+||||||.|+|||||||||+|++|+|||||||||| ||| T Consensus 80 ~~~~~~~rv~vk~~v~~~~p~ipSi~~i~p~A~w~ERE~~DmfGi~f~ghpdlrril~~~~~~g~PLRKDfpl~~~~~~~ 159 (207) T 3i9v_5 80 WKDGDGSRFFVRVYVPEEDPRLPTVTDLWGSANFLEREVYDLFGIVFEGHPDLRKILTPEDLEGHPLRKDYPLGETPTLF 159 (207) T ss_dssp SSSCCCCCEEEEEEECSSCCBCCCCTTTCSTHHHHHHHHHHTSCCBCTTCSCCCCCSSCTTCCSCTTSTTSCCCCCCEEC T ss_pred CCCCCCEEEEEEEECCCCCCCCCCEECCCCCCCCCCEEEEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 66677608999984676567667710305799812322026127676799998454588899989877674688866652 Q ss_pred EEEEE----------CHHHCEEECCCCEEEEHHHCCCCCCCCCCCCCCC Q ss_conf 47887----------6211513126642202221276656323453345 Q gi|254780854|r 154 VELHY----------DDKVKKVVYRPVELMQEHRDYDFLSPWEGVNSLF 192 (202) Q Consensus 154 ~evry----------d~~~k~v~~epv~l~q~~r~f~~~spwe~~~~~~ 192 (202) +|+|| +..+++|+|+|+.+.|+||+ +|+|++++. T Consensus 160 ~e~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~r~-----~~~~~~~~~ 203 (207) T 3i9v_5 160 REGRYIIPAEFRAALTGKDPGLTFYKGGSRKGYRS-----LWADLKKAR 203 (207) T ss_dssp TTSCEECGGGTCCSCCSSCCCSSSCCCGGGSCCCC-----CC------- T ss_pred EEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCC-----HHCCCHHHH T ss_conf 46675586424444456565411301553635304-----111601320 |
>3mcr_A NADH dehydrogenase, subunit C; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.65A {Thermobifida fusca} | Back alignment and structure |
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Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | E-value |
202 | NADH dehydrogenase subunit C [Candidatus Liberibacter a | |||
d2fug51 | 196 | d.307.1.1 (5:1-196) NADH-quinone oxidoreductase chain 5 | 1e-28 |
>d2fug51 d.307.1.1 (5:1-196) NADH-quinone oxidoreductase chain 5, Nqo5 {Thermus thermophilus [TaxId: 274]} Length = 196 | Back information, alignment and structure |
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class: Alpha and beta proteins (a+b) fold: Nqo5-like superfamily: Nqo5-like family: Nqo5-like domain: NADH-quinone oxidoreductase chain 5, Nqo5 species: Thermus thermophilus [TaxId: 274] Score = 119 bits (300), Expect = 1e-28 Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 15/173 (8%) Query: 25 NSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLS----RSNRFDVVYHFLS 80 N +G L + + + + F + D+ G+D+L+ R RF VVY +S Sbjct: 20 NGLGNLWVVLPRERFKEEMAHYKA---MGFNFLADIVGLDYLTYPDPRPERFAVVYELVS 76 Query: 81 PKY-----NRRLRVKIAV-AEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRIL 134 R V++ V E +P++ ++ A++ EREV+D++GI FEGHPDLR+IL Sbjct: 77 LPGWKDGDGSRFFVRVYVPEEDPRLPTVTDLWGSANFLEREVYDLFGIVFEGHPDLRKIL 136 Query: 135 TDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEG 187 T EGHPLRKD+P+ L + + ++ +D G Sbjct: 137 TPEDLEGHPLRKDYPLGETPTLFRE--GRYIIPAEFRAALTGKDPGLTFYKGG 187 |
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 202 | NADH dehydrogenase subunit C [Candidatus Liberibacter a | ||
d2fug51 | 196 | NADH-quinone oxidoreductase chain 5, Nqo5 {Thermus ther | 100.0 |
>d2fug51 d.307.1.1 (5:1-196) NADH-quinone oxidoreductase chain 5, Nqo5 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a+b) fold: Nqo5-like superfamily: Nqo5-like family: Nqo5-like domain: NADH-quinone oxidoreductase chain 5, Nqo5 species: Thermus thermophilus [TaxId: 274] Probab=100.00 E-value=0 Score=330.13 Aligned_cols=149 Identities=35% Similarity=0.631 Sum_probs=127.5 Q ss_pred HHHHHHHHCCCCEEEEEEECCCEEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCC----CCCCEEEEEEEEECC- Q ss_conf 999999861531145798479599998689899999998718789801475132568877----778579999966157- Q gi|254780854|r 8 LGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLS----RSNRFDVVYHFLSPK- 82 (202) Q Consensus 8 L~~~L~~~l~~~I~~~~~~~~el~i~V~~~~l~~vl~~LKdd~~~~F~~LiDItaVDyp~----~~~RFeVvY~LlS~~- 82 (202) |.+.|++.....+.......|+++|.|+++++.+++++||+ ++|++|+|||||||+. .++||+|||||+|+. T Consensus 3 le~~Le~a~~~g~~ve~~~~g~l~I~V~~e~l~evl~~LKe---~gF~~L~dITaVD~~~~~e~~~~rfevvYhL~S~~~ 79 (196) T d2fug51 3 LERVLEEARAKGYPIEDNGLGNLWVVLPRERFKEEMAHYKA---MGFNFLADIVGLDYLTYPDPRPERFAVVYELVSLPG 79 (196) T ss_dssp HHHHHHHHHTTTCCEEECSSSCEEEECCSTTHHHHHHHTTT---TTCCCCCCEEEEECTTCSSCCSSSEEEEEEEECCTT T ss_pred HHHHHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHH---CCCCCEEEEEEECCCCCCCCCCCEEEEEEEEEEEEE T ss_conf 89999986733770101348838999859999999999986---799816578848688767676640699987888864 Q ss_pred ----CCCEEEEEEEECC-CCEEECCCCCEECCCCEECCCHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC----C Q ss_conf ----5205998212057-850101223302553101121011382735679876778899898787113377898----4 Q gi|254780854|r 83 ----YNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTG----F 153 (202) Q Consensus 83 ----~n~ri~Vk~~v~e-~~~vpSi~~i~p~A~W~ERE~~DmfGI~F~gHPdlRRiL~d~~feGhPLRKDFPltG----~ 153 (202) .+.+|+|||.+++ ++.||||++|||+|||+|||+||||||.|+|||||||||++++|+||||||||||.| | T Consensus 80 ~~~~~~~~v~vkv~vp~~~p~ipSi~~i~p~A~w~ERE~~dmfGi~f~ghpd~rr~llpd~~~g~PlRKdfpl~~~~~~~ 159 (196) T d2fug51 80 WKDGDGSRFFVRVYVPEEDPRLPTVTDLWGSANFLEREVYDLFGIVFEGHPDLRKILTPEDLEGHPLRKDYPLGETPTLF 159 (196) T ss_dssp SSSCCCCEEEEEEEECSSCCCCCCCCC-----CCCHHHHHHHHHHSSCCCSSCSCCCCSSCSSSCSSSTTSCCCCCCEEC T ss_pred CCCCCCCEEEEEEEECCCCCEEEEEECCEECCEEEECCCCEEECEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 04788638999997235663122342318065101303526608697898888565579999989877676688865555 Q ss_pred EEEEEC Q ss_conf 478876 Q gi|254780854|r 154 VELHYD 159 (202) Q Consensus 154 ~evryd 159 (202) .|+||+ T Consensus 160 ~~~~~~ 165 (196) T d2fug51 160 REGRYI 165 (196) T ss_dssp TTSCEE T ss_pred CCCCCC T ss_conf 255307 |
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 202 | NADH dehydrogenase subunit C [Candidatus Liberibac | ||
3i9v_5_1-141 | 141 | (5:1-141) NADH-quinone oxidoreductase subunit 5; e | 1e-30 |
>3i9v_5 (5:1-141) NADH-quinone oxidoreductase subunit 5; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_5* 3iam_5* 3ias_5*Length = 141 | Back alignment and structure |
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Score = 126 bits (319), Expect = 1e-30 Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 13/143 (9%) Query: 7 DLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFL 66 L + + + N +G L + + + + F + D+ G+D+L Sbjct: 2 RLERVLEEARAKGYPIEDNGLGNLWVVLPRERFKEEMAHYKAMG---FNFLADIVGLDYL 58 Query: 67 SRSN----RFDVVYHFLSPKY-----NRRLRVKIAVAEGK-SVPSIVGIYPGADWFEREV 116 + + RF VVY +S R V++ V E +P++ ++ A++ EREV Sbjct: 59 TYPDPRPERFAVVYELVSLPGWKDGDGSRFFVRVYVPEEDPRLPTVTDLWGSANFLEREV 118 Query: 117 WDMYGIFFEGHPDLRRILTDYGF 139 +D++GI FEGHPDLR+ILT Sbjct: 119 YDLFGIVFEGHPDLRKILTPEDL 141 |
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 202 | NADH dehydrogenase subunit C [Candidatus Liberibacter a | ||
3i9v_5_1-141 | 141 | NADH-quinone oxidoreductase subunit 5; electron tr | 100.0 |
>3i9v_5 (5:1-141) NADH-quinone oxidoreductase subunit 5; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_5* 3iam_5* 3ias_5* | Back alignment and structure |
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Probab=100.00 E-value=6.8e-40 Score=263.59 Aligned_cols=130 Identities=30% Similarity=0.542 Sum_probs=120.0 Q ss_pred HHHHHHHHHCCCCEEEEEEECCCEEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCC----CCEEEEEEEEECC Q ss_conf 999999986153114579847959999868989999999871878980147513256887777----8579999966157 Q gi|254780854|r 7 DLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRS----NRFDVVYHFLSPK 82 (202) Q Consensus 7 ~L~~~L~~~l~~~I~~~~~~~~el~i~V~~~~l~~vl~~LKdd~~~~F~~LiDItaVDyp~~~----~RFeVvY~LlS~~ 82 (202) ++.+.|++.+++.+.......+++++.|+++.+.+++.+||+. +|.+|++|||+||+++. .+|+++|||.|++ T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~~v~i~~~~l~~v~~~Lk~~---~~~~l~~i~~~D~~~~~~~~~~~f~vvY~l~s~~ 78 (141) T 3i9v_5 2 RLERVLEEARAKGYPIEDNGLGNLWVVLPRERFKEEMAHYKAM---GFNFLADIVGLDYLTYPDPRPERFAVVYELVSLP 78 (141) T ss_dssp TTHHHHHHHHHTTCCCCBCTTSCBEEECCHHHHHHHHHHHHHT---TCCCEEEEEEEECTTCSSCCSSSEEEEEEECCCT T ss_pred CHHHHHHHHHHCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHC---CCCCEEEEEEECCCCCCCCCCCEEEEEEEEEEEE T ss_conf 5899999877426721103588289998699999999999867---9982646887767876777764179999998654 Q ss_pred -----CCCEEEEEEEECC-CCEEECCCCCEECCCCEECCCHHHCCCEECCCCCCCCCCCCCCC Q ss_conf -----5205998212057-85010122330255310112101138273567987677889989 Q gi|254780854|r 83 -----YNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGF 139 (202) Q Consensus 83 -----~n~ri~Vk~~v~e-~~~vpSi~~i~p~A~W~ERE~~DmfGI~F~gHPdlRRiL~d~~f 139 (202) .|.+|+||+.+++ ++.+|||++|||+|+|+|||+||||||.|+|||||||||+|+|| T Consensus 79 ~~~~~~~~~v~v~~~v~~~~p~ipSi~~i~~~A~w~ERE~~DmfGI~f~ghPdlrrlll~ddf 141 (141) T 3i9v_5 79 GWKDGDGSRFFVRVYVPEEDPRLPTVTDLWGSANFLEREVYDLFGIVFEGHPDLRKILTPEDL 141 (141) T ss_dssp TSSSCCCCCEEEEEEECSSCCBCCCCTTTCSTHHHHHHHHHHTSCCBCTTCSCCCCCSSCTTC T ss_pred CCCCCCCEEEEEEEECCCCCCEEEEEECCCCCCCCCEECCCEECCEEECCCCCCCCCCCCCCC T ss_conf 256777508999861365553010001308275113301537438797898888463579899 |