254780854

 Score =  322 bits (824), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 157/195 (80%), Positives = 176/195 (90%), Gaps = 1/195 (0%)

Query: 5   IEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD 64
           +ED+GDYIVNSF  SVR  +NSVGELSLDVDCGDL+SLC FLRDD +C FVNI+DLCGVD
Sbjct: 1   MEDIGDYIVNSFGRSVRSTINSVGELSLDVDCGDLLSLCYFLRDDSNCRFVNIVDLCGVD 60

Query: 65  FLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFF 124
           FLSRS+RFDVVYHFLSPKYN R+RVK+AV+EG S+PS+V +YP A+WFEREV DMYGI F
Sbjct: 61  FLSRSSRFDVVYHFLSPKYNCRVRVKVAVSEGDSIPSMVEVYPAANWFEREVLDMYGIKF 120

Query: 125 EGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSP 184
           EGHPDLRRILTDYGFEGHPLRKDFPVTGFVEL YDDK KKVVY PVELMQE+RDYDFLSP
Sbjct: 121 EGHPDLRRILTDYGFEGHPLRKDFPVTGFVELRYDDKAKKVVYSPVELMQEYRDYDFLSP 180

Query: 185 WEGVNSLFAKEDSKD 199
           WEG + LFA +DS++
Sbjct: 181 WEG-SPLFADKDSEN 194

Species: Candidatus Liberibacter solanacearum
Genus: Candidatus Liberibacter
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  248 bits (634), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 113/189 (59%), Positives = 142/189 (75%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + +L  Y+     G V  A  + GEL++ V+  DLV + +FLRDD  C F++IID+
Sbjct: 1   MTASLSELSTYLGEKLIGRVNEADIAYGELTIHVEPRDLVEVMTFLRDDARCQFISIIDV 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
           CG D+ SR+ RFDVVYH LSPK N R+RVK+   E   VPSI G+YPGADWFERE +D+Y
Sbjct: 61  CGADYPSRAKRFDVVYHLLSPKQNVRVRVKVQADEETMVPSITGVYPGADWFERETYDLY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           G+ F GHPDLRR+LTDYGFEGHPLRKDFP+TGFVE+ YDD+ K+V+Y PVEL QE R++D
Sbjct: 121 GVLFSGHPDLRRLLTDYGFEGHPLRKDFPLTGFVEVRYDDEAKRVIYEPVELKQEFRNFD 180

Query: 181 FLSPWEGVN 189
           FLSPWEG +
Sbjct: 181 FLSPWEGTD 189

Species: Mesorhizobium ciceri
Genus: Mesorhizobium
Family: Phyllobacteriaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  248 bits (634), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 112/189 (59%), Positives = 138/189 (73%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + +L  Y+       +  +    GEL++     ++++L +FLRDD  C FVN+ D+
Sbjct: 1   MSEALNELATYLTEVRGALISSSEIKYGELNVTTTAENVIALLTFLRDDAKCGFVNMTDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
           CGVD+  R +RFDVVYH LSPK N R+R+K+ VAE + VPS  GIYPGADWFERE WDMY
Sbjct: 61  CGVDWPQRPDRFDVVYHLLSPKKNLRIRIKVPVAEDQPVPSACGIYPGADWFERETWDMY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           G+ F GHPDLRRILTDYGFEGHPLRKDFP TGFVE+ YDD  K+VVY PVEL QE R++D
Sbjct: 121 GVLFTGHPDLRRILTDYGFEGHPLRKDFPTTGFVEVRYDDAAKRVVYEPVELKQEFRNFD 180

Query: 181 FLSPWEGVN 189
           FLSPWEG +
Sbjct: 181 FLSPWEGTD 189

Species: Agrobacterium tumefaciens
Genus: Agrobacterium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  248 bits (632), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 115/197 (58%), Positives = 144/197 (73%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   ++DL DY+       +  +  + GEL+L     +L+ L +FLRDD  C FVN ID 
Sbjct: 1   MSDALKDLSDYLGEIRGNLIESSEIAYGELTLIAQPANLIELMTFLRDDAQCQFVNFIDC 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
           CGVD+  R+ RFDVVYH LSP+ N R+RVK+A AE   VPS+  +YPGADWFERE +D+Y
Sbjct: 61  CGVDWPGRAERFDVVYHLLSPRQNIRIRVKVATAEDAPVPSLTAVYPGADWFEREAYDLY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGFEGHPLRKDFP+TGFVE+ YDD+VK+VVY PVEL QE R++D
Sbjct: 121 GILFTGHPDLRRILTDYGFEGHPLRKDFPLTGFVEVRYDDEVKRVVYEPVELKQEFRNFD 180

Query: 181 FLSPWEGVNSLFAKEDS 197
           FLSPWEG + +   ++ 
Sbjct: 181 FLSPWEGTDYVLPGDEK 197

Species: Hoeflea phototrophica
Genus: Hoeflea
Family: Phyllobacteriaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  247 bits (630), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 110/189 (58%), Positives = 142/189 (75%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   ++ L  +I  +  G    +  + GEL++     ++ +L +FLRDD  C F+NIID+
Sbjct: 1   MSEALQVLASHITENSGGLALSSTVAFGELTVTTTVENIYALVTFLRDDARCGFINIIDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
           CGVD+  R  RF+VVYHFL+PK N+R+RVK++ +E K VPSI  ++PGADWFERE WD+Y
Sbjct: 61  CGVDYPERVERFEVVYHFLAPKQNQRIRVKLSTSEDKPVPSICPLFPGADWFEREAWDLY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           G+ F GHPDLRR+LTDYGFEGHPLRKDFP+TGFVE+ YDD VK+VVY PVEL QE R +D
Sbjct: 121 GVMFTGHPDLRRLLTDYGFEGHPLRKDFPLTGFVEVRYDDTVKRVVYEPVELKQEFRSFD 180

Query: 181 FLSPWEGVN 189
           FLSPWEG +
Sbjct: 181 FLSPWEGTD 189

Species: Agrobacterium vitis
Genus: Agrobacterium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  246 bits (628), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 110/189 (58%), Positives = 142/189 (75%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + +L  Y+     G    AV + GEL++ V+  +LV + +FLRDD  C F++IID+
Sbjct: 1   MAASLSELSTYLGEKLPGRFSDAVLAYGELTVHVEPQNLVEVVTFLRDDARCQFISIIDV 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
           CG D+ SR+ RFDVVYH LSP+ N R+RVK+   E   VPSI G++PGADWFERE +D+Y
Sbjct: 61  CGADYPSRAKRFDVVYHLLSPRQNVRIRVKVQADEETMVPSITGVFPGADWFERETYDLY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           G+ F GHPDLRR+LTDYGFEGHPLRKDFP+TGFVE+ YDD+ K+V+Y PVEL QE R++D
Sbjct: 121 GVLFSGHPDLRRLLTDYGFEGHPLRKDFPLTGFVEVRYDDEAKRVIYEPVELKQEFRNFD 180

Query: 181 FLSPWEGVN 189
           FLSPWEG +
Sbjct: 181 FLSPWEGTD 189

Species: Mesorhizobium opportunistum
Genus: Mesorhizobium
Family: Phyllobacteriaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  246 bits (627), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 113/189 (59%), Positives = 135/189 (71%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + +L  Y+  +    +  +    GEL+L     +L+ L +FLRDD  C FVN+ID+
Sbjct: 1   MSEALTELASYLGEARGNLIAASQLKYGELTLTATGENLIPLLTFLRDDAKCGFVNLIDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
           CGVD+  R  RFDVVYH LSPK N R+RVK+A  E   VPS  G+YPGADWFERE WDMY
Sbjct: 61  CGVDWPQRELRFDVVYHLLSPKKNLRIRVKVATDEDTPVPSACGLYPGADWFERETWDMY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           G+ F GHPDLRRILTDYGFEGHPLRKDFP TGFVE+ YDD  K+VVY PVEL QE R++D
Sbjct: 121 GVLFTGHPDLRRILTDYGFEGHPLRKDFPTTGFVEVRYDDAAKRVVYEPVELKQEFRNFD 180

Query: 181 FLSPWEGVN 189
           F+SPWEG  
Sbjct: 181 FMSPWEGTE 189

Species: Rhizobium etli
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  246 bits (627), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 112/189 (59%), Positives = 139/189 (73%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + +L  YI  +    V  +    GEL+L      L++L +FLRDD  C FV+ ID+
Sbjct: 1   MSEALNELASYIREARGALVAGSEVRYGELTLTTKAESLIALLTFLRDDVQCGFVSFIDV 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
           CGVD+  R +RFDVVYH LSP+ N+R+RVK+A  E + VPSI  +YPGADWFERE +DMY
Sbjct: 61  CGVDYPQRPDRFDVVYHLLSPRQNQRIRVKVATGENEPVPSITSVYPGADWFEREAYDMY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGFEG+PLRKDFP+TGFVE+ YD++ K+VVY PVEL QE R++D
Sbjct: 121 GILFTGHPDLRRILTDYGFEGYPLRKDFPLTGFVEVRYDNEAKRVVYEPVELKQEFRNFD 180

Query: 181 FLSPWEGVN 189
           FLSPWEG  
Sbjct: 181 FLSPWEGTE 189

Species: Sinorhizobium medicae
Genus: Sinorhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  245 bits (626), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 113/189 (59%), Positives = 135/189 (71%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + +L  Y+  +    +  +    GEL+L     +LV+L +FLRDD  C FVN+ID+
Sbjct: 1   MSEALTELASYLGEARGNLIAASQMKYGELTLTTTGENLVALLTFLRDDAKCGFVNLIDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
           CGVD+  R  RFDVVYH LSPK N R+RVK+A  E   VPS   +YPGADWFERE WDMY
Sbjct: 61  CGVDWPQRELRFDVVYHLLSPKKNLRIRVKVATDEDTPVPSACPVYPGADWFERETWDMY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           G+ F GHPDLRRILTDYGFEGHPLRKDFP TGFVE+ YDD  K+VVY PVEL QE R++D
Sbjct: 121 GVLFTGHPDLRRILTDYGFEGHPLRKDFPTTGFVEVRYDDAAKRVVYEPVELKQEFRNFD 180

Query: 181 FLSPWEGVN 189
           F+SPWEG  
Sbjct: 181 FMSPWEGTE 189

Species: Rhizobium leguminosarum
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  245 bits (626), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 112/189 (59%), Positives = 135/189 (71%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + +L  Y+  +    +  +    GEL+L     +L++L +FLRDD  C FVN+ID+
Sbjct: 1   MSEALTELASYLGEARGNLIAASQLKYGELTLTATGENLIALLTFLRDDAKCGFVNMIDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
           CGVD+  R  RFDVVYH LSPK N R+RVK+A  E   VPS   +YPGADWFERE WDMY
Sbjct: 61  CGVDWPQRELRFDVVYHLLSPKKNLRIRVKVATDEDTPVPSACAVYPGADWFERETWDMY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           G+ F GHPDLRRILTDYGFEGHPLRKDFP TGFVE+ YDD  K+VVY PVEL QE R++D
Sbjct: 121 GVLFTGHPDLRRILTDYGFEGHPLRKDFPTTGFVEVRYDDAAKRVVYEPVELKQEFRNFD 180

Query: 181 FLSPWEGVN 189
           F+SPWEG  
Sbjct: 181 FMSPWEGTE 189

Species: Rhizobium etli
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  255 bits (654), Expect = 6e-69
 Identities = 98/185 (52%), Positives = 126/185 (68%), Gaps = 10/185 (5%)

Query: 4   KIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGV 63
           K+E+L   ++     ++     + GEL+L V    ++ + +FLRDDP   F  +IDL GV
Sbjct: 3   KLEELVAKLLEKLPDAIGKVTVAFGELTLKVPAEKILEVLTFLRDDPELRFEQLIDLTGV 62

Query: 64  DFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIF 123
           D+  R  RF+VVYH LS K+N RLRVK+   E   VPS+V I+P A+W+ERE +D+YGI 
Sbjct: 63  DYPERGKRFEVVYHLLSYKHNVRLRVKVRAPEDPVVPSVVDIWPSANWYEREAYDLYGIV 122

Query: 124 FEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLS 183
           FEGHPDLRRILTDYGFEGHPLRKDFP+TG+VE+ YDD+ K+VVY PV           LS
Sbjct: 123 FEGHPDLRRILTDYGFEGHPLRKDFPLTGYVEVRYDDEQKRVVYEPVT----------LS 172

Query: 184 PWEGV 188
           PWEG 
Sbjct: 173 PWEGT 177

Length = 189

 Score =  179 bits (456), Expect = 4e-46
 Identities = 84/178 (47%), Positives = 120/178 (67%), Gaps = 4/178 (2%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
               + +L + ++   S  +   V + GEL+L V   +L+ +   L+D+    F +++DL
Sbjct: 2   DDPVLAELLERLLAELSTVIETVVVAEGELTLKVPPDELIDVLKALKDEG---FDHLLDL 58

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGK-SVPSIVGIYPGADWFEREVWDM 119
            GVD+   + RF+VVYH LS K NRR+RVK+ ++E    VPS+  I+P A+W+ERE +DM
Sbjct: 59  TGVDYPQETERFEVVYHLLSYKDNRRVRVKVRLSEDDPHVPSVTDIWPAANWYEREAYDM 118

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHR 177
           +GI FEGHPDLRRIL    +EGHPLRKDFP+ G+VE+ YD++ KKVVY PVEL+ E R
Sbjct: 119 FGIVFEGHPDLRRILMPDDWEGHPLRKDFPLRGYVEVRYDEEDKKVVYEPVELIFERR 176

Length = 176

 Score =  105 bits (265), Expect = 6e-24
 Identities = 48/155 (30%), Positives = 83/155 (53%), Gaps = 6/155 (3%)

Query: 26  SVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNR 85
            + +  + +   D   +   L+   H  +  + ++  +DFL++   F+V Y  LS    +
Sbjct: 55  ELDQAVIWIKKDDNFKVLKILK---HLGYECLSEMSAIDFLAKKGGFEVFYQLLSMSKRK 111

Query: 86  RLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLR 145
           R+RVK  + E +++ S+  ++  A+W ERE++DM+GI    HP L+RIL    + GHPL 
Sbjct: 112 RVRVKCFLKEKEALQSVSFLFKSANWSEREMYDMFGIVINNHPYLKRILMPDDWVGHPLL 171

Query: 146 KDFPVTG--FVELHYDDKVKKVVYRPVELMQEHRD 178
           K +P+ G  F + +  DK+    YR V +  E RD
Sbjct: 172 KSYPLKGDEFAQWYEVDKIFGKEYREV-VGPEQRD 205

Length = 263

 Score =  193 bits (492), Expect = 2e-50
 Identities = 82/168 (48%), Positives = 114/168 (67%)

Query: 19  SVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHF 78
             +    +  EL + +    ++ +  FL+   +  F N+ D+ GVD  +R NRF+VVY+ 
Sbjct: 19  VQKVQYQAGDELEILIHPDGVIPVLLFLKGHTYARFQNLYDIAGVDVPTRKNRFEVVYNL 78

Query: 79  LSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYG 138
           LS +YN R+RVK    E   + S+V ++  ADW EREVWDM+G+ F+ HPDLRRILTDYG
Sbjct: 79  LSVRYNSRIRVKTYTDESTPIDSVVSVFKSADWQEREVWDMFGVTFDNHPDLRRILTDYG 138

Query: 139 FEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWE 186
           FEGHPLRKD+P++G+VE+ YDD+ K+VV  P+EL QE R +D  SPWE
Sbjct: 139 FEGHPLRKDYPLSGYVEVRYDDEEKRVVSEPIELAQEFRKFDLNSPWE 186

Length = 191

 Score =  172 bits (437), Expect = 8e-44
 Identities = 61/119 (51%), Positives = 85/119 (71%), Gaps = 2/119 (1%)

Query: 34  VDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAV 93
           +    L+ + +FL+D P   F  + D+ GVD+  +  RF+VVYH LS K NRR+R+K+ +
Sbjct: 5   IKKEQLLEVLTFLKD-PALGFELLTDVSGVDY-PKEKRFEVVYHLLSIKKNRRIRLKVRL 62

Query: 94  AEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTG 152
           +E   VPS+  ++P A+W+ERE +DMYGI F+GHPDLRRIL    FEGHPLRKD+P+TG
Sbjct: 63  SEDDPVPSLTSVFPTANWYERETYDMYGIVFDGHPDLRRILMPDDFEGHPLRKDYPLTG 121

This model describes the C subunit of the NADH dehydrogenase complex I in bacteria, as well as many instances of the corresponding mitochondrial subunit (NADH dehydrogenase subunit 9) and of the F420H2 dehydrogenase in Methanosarcina. Complex I contains subunits designated A-N. This C subunit often occurs as a fusion protein with the D subunit. This model excludes the NAD(P)H and plastoquinone-dependent form of chloroplasts and. Length = 121

 Score =  138 bits (349), Expect = 1e-33
 Identities = 50/107 (46%), Positives = 68/107 (63%), Gaps = 5/107 (4%)

Query: 41  SLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAV-AEGKSV 99
            +  FL++D         DL GVD+     RF+VVYH  S     R+R+K+ +  +   +
Sbjct: 1   EVARFLKEDGFDRLS---DLTGVDYPEE-GRFEVVYHLASIGDGERVRLKVKLPRDDPEI 56

Query: 100 PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRK 146
           PSI  I+PGA+W+EREV+DM+GI FEGHPDLRR+L    + GHPLRK
Sbjct: 57  PSITDIFPGANWYEREVYDMFGIVFEGHPDLRRLLLPEDWPGHPLRK 103

Length = 103

 Score =  137 bits (347), Expect = 2e-33
 Identities = 56/124 (45%), Positives = 78/124 (62%), Gaps = 9/124 (7%)

Query: 34  VDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNR-------FDVVYHFLSPKYNRR 86
           V    L+ +  FLR  P   +V + DL G+D   R++R       F V YH +S + NR 
Sbjct: 28  VKREQLLEVLRFLRKLP-KPYVMLFDLHGIDERLRTHREGLPAADFTVFYHLISIERNRD 86

Query: 87  LRVKIAVAEGK-SVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLR 145
           + +K+A++E    VP+I  I+P A+W+ERE WDM+GI F+GHP LRRIL    +EGHPLR
Sbjct: 87  IMLKVALSENDLHVPTITKIFPNANWYERETWDMFGITFDGHPHLRRILMPPTWEGHPLR 146

Query: 146 KDFP 149
           KD+P
Sbjct: 147 KDYP 150

Length = 575

 Score =  127 bits (321), Expect = 2e-30
 Identities = 57/143 (39%), Positives = 79/143 (55%), Gaps = 10/143 (6%)

Query: 16  FSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC----GVDFL-SRSN 70
           F+ ++   V   GEL+L V    LV +   LRDDP   F    +LC    GV +      
Sbjct: 77  FADAIERVVVDRGELTLHVRREHLVEVAQTLRDDPALRF----ELCLGVSGVHYPHDTGR 132

Query: 71  RFDVVYHFLSPKYNRRLRVKIAVAEGKS-VPSIVGIYPGADWFEREVWDMYGIFFEGHPD 129
               VYH  S  +NRR+R+++AV +    +PS+V +YP  DW ERE +D +GI F+GHP 
Sbjct: 133 ELHAVYHLTSITHNRRIRLEVAVPDADPHIPSLVSVYPTNDWHERETYDFFGIVFDGHPA 192

Query: 130 LRRILTDYGFEGHPLRKDFPVTG 152
           L RI     + GHP RKD+P+ G
Sbjct: 193 LTRIEMPDDWVGHPQRKDYPLGG 215

Length = 235

 Score =  109 bits (273), Expect = 7e-25
 Identities = 50/140 (35%), Positives = 70/140 (50%), Gaps = 6/140 (4%)

Query: 16  FSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNR---- 71
           F   VR    +   L+       +  +   L+      F  + DL  VD   R +R    
Sbjct: 232 FGDDVRLDEGATDMLTYRCPPELVPEVLRHLKKRASSPFRRLEDLAAVDESCRRDREKFP 291

Query: 72  -FDVVYHFLSPKYNRRLRVKIAV-AEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPD 129
            F V YH LS      +R+K  +      +PS  G++P A+W+ERE +DM+GI F GHP+
Sbjct: 292 DFTVNYHLLSFDTPGHVRIKTELRGRTPELPSATGVFPAANWYEREAFDMFGIRFAGHPN 351

Query: 130 LRRILTDYGFEGHPLRKDFP 149
           LRRIL    +EGHPLRK+ P
Sbjct: 352 LRRILMPPDWEGHPLRKEHP 371

Length = 788

 Score = 97.0 bits (241), Expect = 3e-21
 Identities = 41/108 (37%), Positives = 60/108 (55%), Gaps = 10/108 (9%)

Query: 45  FLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRR----LRVKIAVAEGKSVP 100
            LR      F  + +L G DF++     +V  H  S  Y +R    ++VK+   E   V 
Sbjct: 322 LLRFHEQLAFDYLSELHGTDFVTH---MEVYVHLYS--YGKRQSVAVKVKLD-REAPQVE 375

Query: 101 SIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDF 148
           S+  ++ GA+W ERE +D+ GI F+GHP+L RIL    + GHPLRKD+
Sbjct: 376 SVTPLWKGANWPEREAYDLLGIVFKGHPNLSRILLPDDWVGHPLRKDY 423

Length = 430

 Score = 82.7 bits (205), Expect = 5e-17
 Identities = 40/87 (45%), Positives = 53/87 (60%), Gaps = 5/87 (5%)

Query: 75  VYHFLSPKYN----RRLRVKIAVA-EGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPD 129
            YH +    N    R +R+K+ +  +   VPS+  I+ GADW ERE +DMYGI FEGHP+
Sbjct: 82  FYHLIKVSDNADKPREVRLKVFLPRDDPRVPSVYWIWKGADWQERETYDMYGINFEGHPN 141

Query: 130 LRRILTDYGFEGHPLRKDFPVTGFVEL 156
           L+RIL    + G PLRKD+    F EL
Sbjct: 142 LKRILMPEDWVGWPLRKDYIQPDFYEL 168

Length = 172

 Score = 70.0 bits (171), Expect = 4e-13
 Identities = 33/81 (40%), Positives = 45/81 (55%), Gaps = 5/81 (6%)

Query: 73  DVVYHFLSPKYNRRLRVKIAV---AEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPD 129
             VY FLS +   +  V + V   A+    PS+  I+P A WFERE+ DMYG+   G PD
Sbjct: 71  FAVYLFLSMEQAPKCWVIVKVSVPADNPEFPSVAPIFPAALWFEREIRDMYGLDPVGAPD 130

Query: 130 LRRIL--TDYGFEGHPLRKDF 148
            RR++   D+    +PLRKD 
Sbjct: 131 PRRLVLPDDWPEGIYPLRKDA 151

Length = 165

 Score = 68.6 bits (168), Expect = 1e-12
 Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 5/87 (5%)

Query: 75  VYHFLSPKYN----RRLRVKIAVA-EGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPD 129
           VYH    +Y       + +K+ V  +   +PS+  ++  AD+ ERE +DM GI ++ HP 
Sbjct: 68  VYHLTRIQYGVDQPEEVCIKVFVPRKNPRIPSVFWVWKSADFQERESYDMLGISYDNHPR 127

Query: 130 LRRILTDYGFEGHPLRKDFPVTGFVEL 156
           L+RIL    + G PLRKD+    F E+
Sbjct: 128 LKRILMPESWIGWPLRKDYIAPNFYEI 154

Length = 158

Probab=100.00  E-value=0  Score=510.60  Aligned_cols=188  Identities=52%  Similarity=0.990  Sum_probs=182.8

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCEEEEEEEEEC
Q ss_conf             05799999999986153114579847959999868989999999871878980147513256887777857999996615
Q gi|254780854|r    2 VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSP   81 (202)
Q Consensus         2 ~~~L~~L~~~L~~~l~~~I~~~~~~~~el~i~V~~~~l~~vl~~LKdd~~~~F~~LiDItaVDyp~~~~RFeVvY~LlS~   81 (202)
T Consensus         1 ~e~l~eL~~~L~~~f~~~I~~~~~~~gelti~V~~~~l~evl~~LKdd~~~~Fd~L~DltaVDy~~~~~RFeVVYhL~S~   80 (190)
T PRK06074          1 SEKLEELIAYLEAKLPDAIVSVTVAFGELTLEVPAEKILEVLKFLRDDPELRFEQLIDLTGVDYPGREKRFEVVYHLLSV   80 (190)
T ss_pred             CHHHHHHHHHHHHHHCHHHHEEEEECCCEEEEECHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEC
T ss_conf             96699999999987241211278889927999819999999999855988998705245847268988879999998785


Q ss_pred             CCCCEEEEEEEECCC-CEEECCCCCEECCCCEECCCHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECH
Q ss_conf             752059982120578-5010122330255310112101138273567987677889989878711337789844788762
Q gi|254780854|r   82 KYNRRLRVKIAVAEG-KSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDD  160 (202)
Q Consensus        82 ~~n~ri~Vk~~v~e~-~~vpSi~~i~p~A~W~ERE~~DmfGI~F~gHPdlRRiL~d~~feGhPLRKDFPltG~~evryd~  160 (202)
T Consensus        81 ~~~~ri~vk~~~~~~~p~ipSit~iw~~AnW~ERE~yDmfGI~F~gHPdLrRill~~~~~GhPLRKDyPl~g~~~~~y~~  160 (190)
T PRK06074         81 KHNQRLRVKVRAPEDFPVVPSVVDIWPSANWYEREAYDLYGIVFEGHPDLRRILTDYGFEGHPLRKDFPLTGYVEVRYDE  160 (190)
T ss_pred             CCCCEEEEEECCCCCCCCCCCCHHEEECCCEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECH
T ss_conf             68988999953677899798432123179745555245409423799986131589898778716774688731451074


Q ss_pred             HHCEEECCCCEEEEHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             115131266422022212766563234533457533210
Q gi|254780854|r  161 KVKKVVYRPVELMQEHRDYDFLSPWEGVNSLFAKEDSKD  199 (202)
Q Consensus       161 ~~k~v~~epv~l~q~~r~f~~~spwe~~~~~~~~~~~~~  199 (202)
T Consensus       161 ~~~~v~~~~~~~----------~~~~~~~~v~~~~~~~~  189 (190)
T PRK06074        161 ELKRVVYEPVTL----------SPWEGTPYVLPGDEKAG  189 (190)
T ss_pred             HHCEEEECCCCC----------CCCCCCCCCCCCCCCCC
T ss_conf             347585126645----------73258884676866678

Probab=100.00  E-value=0  Score=454.64  Aligned_cols=187  Identities=45%  Similarity=0.861  Sum_probs=178.2

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEEEE-CCCEEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCEEEEEEEEEC
Q ss_conf             579999999998615311457984-7959999868989999999871878980147513256887777857999996615
Q gi|254780854|r    3 RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSP   81 (202)
Q Consensus         3 ~~L~~L~~~L~~~l~~~I~~~~~~-~~el~i~V~~~~l~~vl~~LKdd~~~~F~~LiDItaVDyp~~~~RFeVvY~LlS~   81 (202)
T Consensus         2 ~q~~~fg~ya~e~Lpk~~~k~~~~~~~~lei~~~~~~~i~vl~flk~h~y~r~q~~~Diagvdvp~rk~rfevvynl~sv   81 (191)
T KOG1713           2 MQLTLFGKYAAECLPKRVQKVQYQAGDELEILIHPDGVIPVLLFLKGHTYARFQNLYDIAGVDVPTRKNRFEVVYNLLSV   81 (191)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCEEEEEEEECCC
T ss_conf             40558899998751388776443035420430477864677766616450146676764377865634436775300101


Q ss_pred             CCCCEEEEEEEECCCCEEECCCCCEECCCCEECCCHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHH
Q ss_conf             75205998212057850101223302553101121011382735679876778899898787113377898447887621
Q gi|254780854|r   82 KYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDK  161 (202)
Q Consensus        82 ~~n~ri~Vk~~v~e~~~vpSi~~i~p~A~W~ERE~~DmfGI~F~gHPdlRRiL~d~~feGhPLRKDFPltG~~evryd~~  161 (202)
T Consensus        82 r~nsrirVkt~tde~tpI~sv~~vfksad~~EREv~DM~GV~f~nHPdLrRIltdygfeGhPlRKDyplsgy~Evryd~~  161 (191)
T KOG1713          82 RYNSRIRVKTYTDESTPIDSVVSVFKSADWQEREVWDMFGVTFDNHPDLRRILTDYGFEGHPLRKDYPLSGYVEVRYDDE  161 (191)
T ss_pred             CCCCEEEEEEECCCCCCCCCCEEEEECCCHHHHHHHHHHCEECCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCH
T ss_conf             23546899983156766775057541587478778766423104786532204666645785224677888268750652


Q ss_pred             HCEEECCCCEEEEHHHCCCCCCCCCCCC
Q ss_conf             1513126642202221276656323453
Q gi|254780854|r  162 VKKVVYRPVELMQEHRDYDFLSPWEGVN  189 (202)
Q Consensus       162 ~k~v~~epv~l~q~~r~f~~~spwe~~~  189 (202)
T Consensus       162 ~krvv~ep~elaqefr~fd~~spwe~~~  189 (191)
T KOG1713         162 EKRVVSEPIELAQEFRKFDLNSPWEQFP  189 (191)
T ss_pred             HCEEECCHHHHHHHHHHCCCCCCHHHCC
T ss_conf             3023327689999876453589356467

Probab=100.00  E-value=0  Score=405.65  Aligned_cols=174  Identities=48%  Similarity=0.879  Sum_probs=162.4

Q ss_pred             CCHH-HHHHHHHHHHHCCCCEEEEEEECCCEEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCEEEEEEEE
Q ss_conf             9057-999999999861531145798479599998689899999998718789801475132568877778579999966
Q gi|254780854|r    1 MVRK-IEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFL   79 (202)
Q Consensus         1 M~~~-L~~L~~~L~~~l~~~I~~~~~~~~el~i~V~~~~l~~vl~~LKdd~~~~F~~LiDItaVDyp~~~~RFeVvY~Ll   79 (202)
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~Lk~~~---f~~l~d~~gvD~~~~~~~FevvYhL~   77 (176)
T COG0852           1 PDDPVLAELLERLLAELSTVIETVVVAEGELTLKVPPDELIDVLKALKDEG---FDHLLDLTGVDYPQETERFEVVYHLL   77 (176)
T ss_pred             CCCHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEECCHHHHHHHHHHHHHHH---HHHHHHHHCCCCCCCCCCEEEEEEEE
T ss_conf             961356787776666320004210010016787347889999999974420---78898764565425688579999964


Q ss_pred             ECCCCCEEEEEEEECCCCE-EECCCCCEECCCCEECCCHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf             1575205998212057850-101223302553101121011382735679876778899898787113377898447887
Q gi|254780854|r   80 SPKYNRRLRVKIAVAEGKS-VPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHY  158 (202)
Q Consensus        80 S~~~n~ri~Vk~~v~e~~~-vpSi~~i~p~A~W~ERE~~DmfGI~F~gHPdlRRiL~d~~feGhPLRKDFPltG~~evry  158 (202)
T Consensus        78 s~~~~~~v~vkv~~~~~~~~vpSv~~I~~~A~W~ERE~yDmfGI~FeGHP~LrRilm~~~~~GhPLRKDfpl~~~~~~~~  157 (176)
T COG0852          78 SYKDNRRVRVKVRLSEDDPHVPSVTDIWPAANWYEREAYDMFGIVFEGHPDLRRILMPDDWEGHPLRKDFPLRGYVEVRY  157 (176)
T ss_pred             ECCCCCEEEEEEECCCCCCCCCCHHHHCCCCCHHHHHHHEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC
T ss_conf             06889789999886898886871577313576266633223125875996621435788878997567768886388341


Q ss_pred             CHHHCEEECCCCEEEEHHH
Q ss_conf             6211513126642202221
Q gi|254780854|r  159 DDKVKKVVYRPVELMQEHR  177 (202)
Q Consensus       159 d~~~k~v~~epv~l~q~~r  177 (202)
T Consensus       158 ~~~~~~~~~~~~~~~~~~~  176 (176)
T COG0852         158 DEEDKKVVYEPVELIFERR  176 (176)
T ss_pred             CHHHCCCCCCCCCCCCCCC
T ss_conf             2120534456400156689

Probab=100.00  E-value=0  Score=417.21  Aligned_cols=156  Identities=35%  Similarity=0.695  Sum_probs=144.8

Q ss_pred             HHHHHHHHH---HCCCCEEEEEEECCCEEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCC-CCEEEEEEEEEC
Q ss_conf             999999998---6153114579847959999868989999999871878980147513256887777-857999996615
Q gi|254780854|r    6 EDLGDYIVN---SFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRS-NRFDVVYHFLSP   81 (202)
Q Consensus         6 ~~L~~~L~~---~l~~~I~~~~~~~~el~i~V~~~~l~~vl~~LKdd~~~~F~~LiDItaVDyp~~~-~RFeVvY~LlS~   81 (202)
T Consensus        67 d~L~~a~~~~~~~~~~aie~vvVdrgELTl~V~re~l~~V~~~LRDdp~lrFe~l~dvtGVDYP~~~~rrf~vVYhLlS~  146 (238)
T PRK07785         67 DRLAEALEEEGVEFGDAIEKVVVDRGELTLHVRRERLPEVAQTLRDDPALRFELCLGVSGVHYPDDTGRELHAVYPLTSI  146 (238)
T ss_pred             HHHHHHHHHCCCCHHHHEEEEEEECCEEEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC
T ss_conf             99999987705565442137888688389998789999999987079655562021544545687567643699982378


Q ss_pred             CCCCEEEEEEEECCCCE-EECCCCCEECCCCEECCCHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECH
Q ss_conf             75205998212057850-10122330255310112101138273567987677889989878711337789844788762
Q gi|254780854|r   82 KYNRRLRVKIAVAEGKS-VPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDD  160 (202)
Q Consensus        82 ~~n~ri~Vk~~v~e~~~-vpSi~~i~p~A~W~ERE~~DmfGI~F~gHPdlRRiL~d~~feGhPLRKDFPltG~~evryd~  160 (202)
T Consensus       147 ~~N~RiRlkv~v~e~dP~vpSv~~v~~~AnW~ERE~~DmfGI~F~GHPdLrRIlmp~d~~GHPlRKD~PL~G-ipVeYkg  225 (238)
T PRK07785        147 THNRRIRLEVAAPDSDPHIPSLVSVYPTNDWHERETYDFFGIIFDGHPALTRIEMPDDWQGHPQRKDYPLGG-IPVEYKG  225 (238)
T ss_pred             CCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC-CEEEECC
T ss_conf             779889999975888985885323356887467645400052247999861036899998775356767887-2574168


Q ss_pred             HH
Q ss_conf             11
Q gi|254780854|r  161 KV  162 (202)
Q Consensus       161 ~~  162 (202)
T Consensus       226 a~  227 (238)
T PRK07785        226 AQ  227 (238)
T ss_pred             CC
T ss_conf             86

Probab=100.00  E-value=0  Score=398.18  Aligned_cols=123  Identities=50%  Similarity=0.987  Sum_probs=118.0

Q ss_pred             EEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCC-CCC-----CCCCEEEEEEEEECCCCC----EEEEEEEECCCCE-
Q ss_conf             99998689899999998718789801475132568-877-----778579999966157520----5998212057850-
Q gi|254780854|r   30 LSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD-FLS-----RSNRFDVVYHFLSPKYNR----RLRVKIAVAEGKS-   98 (202)
Q Consensus        30 l~i~V~~~~l~~vl~~LKdd~~~~F~~LiDItaVD-yp~-----~~~RFeVvY~LlS~~~n~----ri~Vk~~v~e~~~-   98 (202)
T Consensus         1 ~~v~~~~~~~~~v~~~Lk~d~~l~F~~L~d~~GVD~yp~~~~~l~~~~fevvY~L~S~~~~~~~~~~~~~Kv~~~~~d~~   80 (136)
T TIGR01961         1 LVVEIKKEQLLEVLTFLKDDPALGFELLSDVSGVDEYPKKERELREKRFEVVYHLLSIKHNQKRKSRIRIKVRLSEDDPN   80 (136)
T ss_pred             CEEEECHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCCC
T ss_conf             91563465689998740022216801566655310012578888876630566652363411147258999873789898


Q ss_pred             -EECCCCCEECCCCEECCCHHHCCCEECCCCCCCCCCCCCCCCC-CCCCCCCCCCC
Q ss_conf             -1012233025531011210113827356798767788998987-87113377898
Q gi|254780854|r   99 -VPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEG-HPLRKDFPVTG  152 (202)
Q Consensus        99 -vpSi~~i~p~A~W~ERE~~DmfGI~F~gHPdlRRiL~d~~feG-hPLRKDFPltG  152 (202)
T Consensus        81 ~vPS~~~~~~~AnW~ERE~YDmyGI~F~gHPdLrRil~P~df~G~hPLRKDyPl~g  136 (136)
T TIGR01961        81 HVPSVTSVFKTANWYERETYDMYGIVFDGHPDLRRILMPDDFEGVHPLRKDYPLTG  136 (136)
T ss_pred             CCCEEEECCCCCCCCCCEEEEEECCEECCCCCCCEEECCCCCEECCCCCCCCCCCC
T ss_conf             68701421467872220345431325737899753226888883257755677889

Complex I contains subunits designated A-N. This C subunit often occurs as a fusion protein with the D subunit. This entry excludes the NAD(P)H and plastoquinone-dependent form of chloroplasts and Synechocystis.; GO: 0016651 oxidoreductase activity acting on NADH or NADPH, 0006118 electron transport.

Probab=100.00  E-value=0  Score=388.06  Aligned_cols=132  Identities=30%  Similarity=0.582  Sum_probs=127.8

Q ss_pred             CEEEEEEECCCEEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEECCCCE
Q ss_conf             11457984795999986898999999987187898014751325688777785799999661575205998212057850
Q gi|254780854|r   19 SVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKS   98 (202)
Q Consensus        19 ~I~~~~~~~~el~i~V~~~~l~~vl~~LKdd~~~~F~~LiDItaVDyp~~~~RFeVvY~LlS~~~n~ri~Vk~~v~e~~~   98 (202)
T Consensus        48 ~i~~syie~~~lvi~i~~~dn~~~l~~Lk---~lgy~~Lse~sAiD~~~~~~rFEvvY~LLS~~~n~RiRvK~~v~e~e~  124 (263)
T PRK08491         48 EILDSYVELDQAVIWIKKDDNFKVLKILK---TLGYEILSEMSAIDFLAKKGGFEVFYQLLNLSKRKRVRVKCFVKKGEA  124 (263)
T ss_pred             HHHHHHHCCCEEEEEECHHHHHHHHHHHH---HCCHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCC
T ss_conf             68887741572899975478899999998---778145333111444466895699998125666854999998689996


Q ss_pred             EECCCCCEECCCCEECCCHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             1012233025531011210113827356798767788998987871133778984
Q gi|254780854|r   99 VPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGF  153 (202)
Q Consensus        99 vpSi~~i~p~A~W~ERE~~DmfGI~F~gHPdlRRiL~d~~feGhPLRKDFPltG~  153 (202)
T Consensus       125 i~Svt~i~~sAnW~ERE~yDmfGI~F~gHPdLrRILt~~~f~GhPLRKDfPL~GD  179 (263)
T PRK08491        125 LDSVSFLFRSANWSEREMYDMFGIVFNNHPYLKRILMPDDWVGHPLLKSYPLKGD  179 (263)
T ss_pred             CCCHHHHCCCCCHHHHHHHHHCCEEECCCCCCCEECCCCCCCCCCCCCCCCCCCC
T ss_conf             8725652245874888676442652479997120267889888861577788850

Probab=100.00  E-value=0  Score=344.42  Aligned_cols=143  Identities=41%  Similarity=0.734  Sum_probs=130.8

Q ss_pred             HHHHHHHCCCCEEEEEEE-CCCEEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCC-------EEEEEEEEE
Q ss_conf             999998615311457984-795999986898999999987187898014751325688777785-------799999661
Q gi|254780854|r    9 GDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNR-------FDVVYHFLS   80 (202)
Q Consensus         9 ~~~L~~~l~~~I~~~~~~-~~el~i~V~~~~l~~vl~~LKdd~~~~F~~LiDItaVDyp~~~~R-------FeVvY~LlS   80 (202)
T Consensus         2 ~~~L~~~Fg~~~~~~~~~~~~~~~~~v~~~~~~~v~~~L~~~~-~~f~~L~dl~~vD~~~r~~r~~~~~~~f~vvyhl~s   80 (575)
T PRK11742          2 IGELRNRFGPDAFTVQATRTGVPVVWIKREQLLEVLRFLRKLP-KPYVMLFDLHGIDERLRTHREGLPAADFTVFYHLIS   80 (575)
T ss_pred             HHHHHHHHCHHHCCEEECCCCCEEEEECHHHHHHHHHHHHCCC-CCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEE
T ss_conf             3789866123423101112895699986888999999985385-103501244554153334556688787799999863


Q ss_pred             CCCCCEEEEEEEECCCCE-EECCCCCEECCCCEECCCHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             575205998212057850-101223302553101121011382735679876778899898787113377898
Q gi|254780854|r   81 PKYNRRLRVKIAVAEGKS-VPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTG  152 (202)
Q Consensus        81 ~~~n~ri~Vk~~v~e~~~-vpSi~~i~p~A~W~ERE~~DmfGI~F~gHPdlRRiL~d~~feGhPLRKDFPltG  152 (202)
T Consensus        81 ~~~n~~irvk~~~~~~~~~~~s~~~~~~~a~w~Ere~~d~~Gi~f~ghp~~rr~~~~~~~~~~plrkd~~~~~  153 (575)
T PRK11742         81 IERNRDIMLKVALSENDLRVPTITKIFPNANWYERETWDMFGITFDGHPHLRRILMPPTWEGHPLRKDYPARA  153 (575)
T ss_pred             CCCCCEEEEEEECCCCCCCCCCHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCC
T ss_conf             6889669999865787898981566333675788888762386637999862121677678888767775445

Probab=100.00  E-value=0  Score=310.67  Aligned_cols=147  Identities=36%  Similarity=0.623  Sum_probs=136.3

Q ss_pred             HHHHHHHHHCCCCEEEEEEECCCEEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCC-----EEEEEEEEEC
Q ss_conf             99999998615311457984795999986898999999987187898014751325688777785-----7999996615
Q gi|254780854|r    7 DLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNR-----FDVVYHFLSP   81 (202)
Q Consensus         7 ~L~~~L~~~l~~~I~~~~~~~~el~i~V~~~~l~~vl~~LKdd~~~~F~~LiDItaVDyp~~~~R-----FeVvY~LlS~   81 (202)
T Consensus       219 ~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~lk~~~~~~f~~l~~i~~vD~~~~~~~~~~~~~~~~y~l~s~  298 (784)
T PRK13292        219 GLAGELEEAFGDRVRVEEFATDMLTYRCPPELVPEVLRHLKQRSSAPFRRLEDLAAVDESCRRERSAFPDFTVNYHLLSF  298 (784)
T ss_pred             HHHHHHHHHHCCCEEECCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCHHHCCCEEECCCCCCCCCCCCCEEEEEEEECC
T ss_conf             58899998726544651465663256347777799999986555644201025211102011366667855899996124


Q ss_pred             CCCCEEEEEEEECC-CCEEECCCCCEECCCCEECCCHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             75205998212057-8501012233025531011210113827356798767788998987871133778984
Q gi|254780854|r   82 KYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGF  153 (202)
Q Consensus        82 ~~n~ri~Vk~~v~e-~~~vpSi~~i~p~A~W~ERE~~DmfGI~F~gHPdlRRiL~d~~feGhPLRKDFPltG~  153 (202)
T Consensus       299 ~~~~~~~~~~~~~~~~p~~psi~~~~p~a~w~ErE~~d~fGi~f~ghp~~rr~~l~~~~~~~PlrKD~~~~~~  371 (784)
T PRK13292        299 DTPGHLRIKTELRGDTPELPSITGVFPAANWYEREAFDMFGIRFAGHPNLRRILMPPDWEGHPLRKEHPFRAT  371 (784)
T ss_pred             CCCCEEEEEEECCCCCCCCCCHHHHCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCC
T ss_conf             6786589983168778999835663347752888888743714369988412358998999986678877666

Probab=100.00  E-value=5.6e-45  Score=295.30  Aligned_cols=126  Identities=30%  Similarity=0.540  Sum_probs=117.0

Q ss_pred             CCEEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCEEEEEEEEECCCC----CEEEEEEEECC-CCEEECC
Q ss_conf             959999868989999999871878980147513256887777857999996615752----05998212057-8501012
Q gi|254780854|r   28 GELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYN----RRLRVKIAVAE-GKSVPSI  102 (202)
Q Consensus        28 ~el~i~V~~~~l~~vl~~LKdd~~~~F~~LiDItaVDyp~~~~RFeVvY~LlS~~~n----~ri~Vk~~v~e-~~~vpSi  102 (202)
T Consensus        25 GvE~i~v~~~~~~~va~aL~~~---GFnyL~~q~gyD~~p-g~~l~svYhl~~~~~~~d~p~rvrlKV~lpre~P~vPSv  100 (158)
T CHL00012         25 GIETLQIKPEDWHSIAVILYVY---GYNYLRSQCAYDVAP-GGLLASVYHLTRIEYGVDQPEEVCIKVFVPRDNPRIPSV  100 (158)
T ss_pred             CEEEEEECHHHHHHHHHHHHHH---CCCCEEEEEEECCCC-CCCEEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCC
T ss_conf             5378766676869999999981---854124663231379-985799999988125656786799999657889989978


Q ss_pred             CCCEECCCCEECCCHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             2330255310112101138273567987677889989878711337789844788
Q gi|254780854|r  103 VGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELH  157 (202)
Q Consensus       103 ~~i~p~A~W~ERE~~DmfGI~F~gHPdlRRiL~d~~feGhPLRKDFPltG~~evr  157 (202)
T Consensus       101 ~~iwp~Adw~ERE~~DmfGI~F~GHPdlrRillpdd~~g~PLRKDf~~p~~~elq  155 (158)
T CHL00012        101 FWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYIAPNFYEIQ  155 (158)
T ss_pred             HHCCCCCEEEHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf             0001486442554554408013699996211489999988854650699935721

Probab=100.00  E-value=1.8e-42  Score=279.67  Aligned_cols=124  Identities=37%  Similarity=0.592  Sum_probs=115.0

Q ss_pred             EEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCEEEEEEEEECCCC----CEEEEEEEECC-CCEEECCCC
Q ss_conf             9999868989999999871878980147513256887777857999996615752----05998212057-850101223
Q gi|254780854|r   30 LSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYN----RRLRVKIAVAE-GKSVPSIVG  104 (202)
Q Consensus        30 l~i~V~~~~l~~vl~~LKdd~~~~F~~LiDItaVDyp~~~~RFeVvY~LlS~~~n----~ri~Vk~~v~e-~~~vpSi~~  104 (202)
T Consensus        41 E~i~V~p~~l~~va~aL~~~---GFnyL~~q~~yD~~P-g~~LvsvYHl~~~~d~~d~p~evrlKV~vprd~P~iPSi~~  116 (172)
T PRK12494         41 EIIKVEPDFLLPIATALYAY---GFNYLQCQGGYDEGP-GKNLVSFYHLIKVSDNADKPREVRLKVFLPRDDPRVPSVYW  116 (172)
T ss_pred             EEEEECHHHHHHHHHHHHHC---CCCHHHHEEEEECCC-CCEEEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHH
T ss_conf             77314789999999999982---850000110263279-97489998577842676787689999977888998997366


Q ss_pred             CEECCCCEECCCHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             30255310112101138273567987677889989878711337789844788
Q gi|254780854|r  105 IYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELH  157 (202)
Q Consensus       105 i~p~A~W~ERE~~DmfGI~F~gHPdlRRiL~d~~feGhPLRKDFPltG~~evr  157 (202)
T Consensus       117 iw~~AdW~ERE~yDmfGI~F~GHPdlrRilmpedw~G~PLRKDyi~pdfyelq  169 (172)
T PRK12494        117 IWKGADWQERETYDMYGINFEGHPNLKRILMPEDWVGWPLRKDYIQPDFYELQ  169 (172)
T ss_pred             HCCCCCCHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf             15588501543421047364799986035699999888866772699840410

Probab=100.00  E-value=2.8e-41  Score=272.40  Aligned_cols=141  Identities=30%  Similarity=0.516  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHHCCCCEEE-EE---EECCCEEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCEEEEEEEEE
Q ss_conf             999999999861531145-79---84795999986898999999987187898014751325688777785799999661
Q gi|254780854|r    5 IEDLGDYIVNSFSGSVRF-AV---NSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLS   80 (202)
Q Consensus         5 L~~L~~~L~~~l~~~I~~-~~---~~~~el~i~V~~~~l~~vl~~LKdd~~~~F~~LiDItaVDyp~~~~RFeVvY~LlS   80 (202)
T Consensus       268 L~~yv~vi~e~~g~~vl~d~YIN~LskdvPtlvv~~e~yy~v~E~lr~hE~l~fdYlSeLh~tDf~---thmEvyvHl~S  344 (420)
T PRK07735        268 LNQYVEVIKEKLGEDALVDAYINKLSKDVPTLVVEPEKYYEVMELLRFHEGLAFDYMSELHATDFV---THMEVYVHLFS  344 (420)
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHH---HHEEEEEEEEE
T ss_conf             999999999870147899999988606688157545879999999875031024788763030024---11056787775


Q ss_pred             CCCCCEEEEEEEECC-CCEEECCCCCEECCCCEECCCHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             575205998212057-85010122330255310112101138273567987677889989878711337
Q gi|254780854|r   81 PKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDF  148 (202)
Q Consensus        81 ~~~n~ri~Vk~~v~e-~~~vpSi~~i~p~A~W~ERE~~DmfGI~F~gHPdlRRiL~d~~feGhPLRKDF  148 (202)
T Consensus       345 y~~rq~vavKVK~dRe~p~v~Sv~plW~gAnWpErEayDLLGi~F~GHpnL~RI~mpddWvGhPLRKDY  413 (420)
T PRK07735        345 YGKKQSVAVKVKLDREAPQVESVTPLWKGADWPEREAYDLLGIVFKGHPNLSRILMPDDWVGHPLRKDY  413 (420)
T ss_pred             CCCCCEEEEEEECCCCCCCCCCHHCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCC
T ss_conf             278861689863145676543100135789983455665402112699880001166444578433557

Probab=99.95  E-value=1.8e-27  Score=188.35  Aligned_cols=144  Identities=34%  Similarity=0.461  Sum_probs=113.3

Q ss_pred             CCH-HHHHHHHHHHHHCCCCEEEE-EEECCCEEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCEEEEEEE
Q ss_conf             905-79999999998615311457-9847959999868989999999871878980147513256887777857999996
Q gi|254780854|r    1 MVR-KIEDLGDYIVNSFSGSVRFA-VNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHF   78 (202)
Q Consensus         1 M~~-~L~~L~~~L~~~l~~~I~~~-~~~~~el~i~V~~~~l~~vl~~LKdd~~~~F~~LiDItaVDyp~~~~RFeVvY~L   78 (202)
T Consensus         1 ~~e~k~e~~~~el~~~fpg~i~~e~~~~~~~~~~~V~~~~l~~~~e~l~~~~d-~~--~~~liG~~e~~~~~~~-~v~~f   76 (165)
T COG3262           1 SEEVKGEEILAELNERFPGVVLDEERQTRSQLTVTVKREYLPDVVEFLYYELD-GW--LSVLIGNDEDALNGHF-AVYLF   76 (165)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHCHHHEEEEEEHHHHHHHHHHHHHHHC-CC--HHEEECCCCCCCCCCE-EEEEE
T ss_conf             93136789999999767404134303052141676448662999999987606-53--3001313444446731-69999


Q ss_pred             EECCCC--CEEEEEEEECC-CCEEECCCCCEECCCCEECCCHHHCCCEECCCCCCCCCC-CCCCCCC-CCCCCCC
Q ss_conf             615752--05998212057-850101223302553101121011382735679876778-8998987-8711337
Q gi|254780854|r   79 LSPKYN--RRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRIL-TDYGFEG-HPLRKDF  148 (202)
Q Consensus        79 lS~~~n--~ri~Vk~~v~e-~~~vpSi~~i~p~A~W~ERE~~DmfGI~F~gHPdlRRiL-~d~~feG-hPLRKDF  148 (202)
T Consensus        77 Ls~~~a~~~~v~vk~~vp~dnpe~pSva~i~P~A~wfEREi~Dm~Gl~~vg~PD~RRLvLpddwPeg~yPLRkd~  151 (165)
T COG3262          77 LSMEQAPKCWVIVKVSVPADNPEFPSVAPIFPAALWFEREIRDMYGLDPVGAPDPRRLVLPDDWPEGIYPLRKDA  151 (165)
T ss_pred             EEECCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCHHHC
T ss_conf             987168974899998628989867763102650478899999861856378998530435544766643001213

Probab=100.00  E-value=6.9e-38  Score=251.78  Aligned_cols=102  Identities=50%  Similarity=0.992  Sum_probs=95.6

Q ss_pred             HHHHHHHHCCCCCCCEEEECCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEEC-CCCEEECCCCCEECCCCEECCCHHH
Q ss_conf             999998718789801475132568877778579999966157520599821205-7850101223302553101121011
Q gi|254780854|r   41 SLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVA-EGKSVPSIVGIYPGADWFEREVWDM  119 (202)
Q Consensus        41 ~vl~~LKdd~~~~F~~LiDItaVDyp~~~~RFeVvY~LlS~~~n~ri~Vk~~v~-e~~~vpSi~~i~p~A~W~ERE~~Dm  119 (202)
T Consensus         1 ~~~~~l~~~---g~~~L~~i~~~D~~~~-~~~~~~Y~~~~~~~~~~v~l~~~v~~~~p~vpSi~~i~p~A~w~ERE~~Dm   76 (103)
T pfam00329         1 EVARFLKED---GFDRLSDLTGVDYPEE-GRFEVVYHLASIGDGERVRLKVKLPRDDPEIPSITDIFPGANWYEREVYDM   76 (103)
T ss_pred             CHHHHHHHC---CCCEEEEEEEEECCCC-CEEEEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCEECCCHHHHHHHEE
T ss_conf             977999768---9995878886988999-989999999978899499999993887871385312275788877223161


Q ss_pred             CCCEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             382735679876778899898787113
Q gi|254780854|r  120 YGIFFEGHPDLRRILTDYGFEGHPLRK  146 (202)
Q Consensus       120 fGI~F~gHPdlRRiL~d~~feGhPLRK  146 (202)
T Consensus        77 fGi~f~ghPd~rrlll~~~~~~~PLrK  103 (103)
T pfam00329        77 FGIVFEGHPDLRRLLLPEDWPGHPLRK  103 (103)
T ss_pred             CCEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf             263768999972414888998998789

 Score =  145 bits (367), Expect = 6e-36
 Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 2/130 (1%)

Query: 5   IEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD 64
           +E     I   +  ++   V   GE++  V    L+ + + LRDDP   F   + + GV 
Sbjct: 84  LERSLKEIGTPYDTAISRVVVDRGEITFHVQREHLLDVATRLRDDPALRFELCLGVTGVH 143

Query: 65  FLSR-SNRFDVVYHFLSPKYNRRLRVKIAVAEGK-SVPSIVGIYPGADWFEREVWDMYGI 122
           +     N    VY   S  +N  +R++++  +    +PSIV +YP  DW ERE WD +GI
Sbjct: 144 YPEDEGNELHAVYALRSITHNYEIRLEVSCPDSDPHIPSIVSVYPTNDWHEREAWDFFGI 203

Query: 123 FFEGHPDLRR 132
            F+GHP L R
Sbjct: 204 IFDGHPALTR 213

 Score =  134 bits (337), Expect = 2e-32
 Identities = 56/188 (29%), Positives = 87/188 (46%), Gaps = 32/188 (17%)

Query: 25  NSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLS----RSNRFDVVYHFLS 80
           N +G L + +         +  +      F  + D+ G+D+L+    R  RF VVY  +S
Sbjct: 20  NGLGNLWVVLPRERFKEEMAHYKA---MGFNFLADIVGLDYLTYPDPRPERFAVVYELVS 76

Query: 81  PKY-----NRRLRVKIAV-AEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRIL 134
                     R  V++ V  E   +P++  ++  A++ EREV+D++GI FEGHPDLR+IL
Sbjct: 77  LPGWKDGDGSRFFVRVYVPEEDPRLPTVTDLWGSANFLEREVYDLFGIVFEGHPDLRKIL 136

Query: 135 TDYGFEGHPLRKDFPV----TGFVELHY----------DDKVKKVVYRPVELMQEHRDYD 180
           T    EGHPLRKD+P+    T F E  Y            K   + +      + +R   
Sbjct: 137 TPEDLEGHPLRKDYPLGETPTLFREGRYIIPAEFRAALTGKDPGLTFYKGGSRKGYR--- 193

Query: 181 FLSPWEGV 188
             S W  +
Sbjct: 194 --SLWADL 199

Probab=100.00  E-value=0  Score=406.29  Aligned_cols=177  Identities=32%  Similarity=0.554  Sum_probs=157.4

Q ss_pred             HHHHHHHHCCCCEEEEEEECCCEEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCC----CCCCEEEEEEEEECC-
Q ss_conf             999999861531145798479599998689899999998718789801475132568877----778579999966157-
Q gi|254780854|r    8 LGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLS----RSNRFDVVYHFLSPK-   82 (202)
Q Consensus         8 L~~~L~~~l~~~I~~~~~~~~el~i~V~~~~l~~vl~~LKdd~~~~F~~LiDItaVDyp~----~~~RFeVvY~LlS~~-   82 (202)
                      |.+.|++.+...+.......|+++|.|+++++.+++++||+   ++|++|+|||||||++    +++||+|||||+|++ 
T Consensus         3 le~~l~e~~~~~~~~e~~~~g~l~i~V~~e~l~~v~~~Lk~---~gf~~L~dit~vD~~~~~~~~~~rf~vvY~l~S~~~   79 (207)
T 3i9v_5            3 LERVLEEARAKGYPIEDNGLGNLWVVLPRERFKEEMAHYKA---MGFNFLADIVGLDYLTYPDPRPERFAVVYELVSLPG   79 (207)
T ss_dssp             THHHHHHHHHTTCCCCBCTTSCBEEECCHHHHHHHHHHHHH---TTCCCEEEEEEEECTTCSSCCSSSEEEEEEECCCTT
T ss_pred             HHHHHHHHHHCCCCEEECCCCCEEEEECHHHHHHHHHHHHH---CCCCCEEEEEEEECCCCCCCCCCEEEEEEEEECCCC
T ss_conf             89999986643672002458838999839999999999986---899928788848278776787875899999744655


Q ss_pred             ----CCCEEEEEEEECCC-CEEECCCCCEECCCCEECCCHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCC----CCC
Q ss_conf             ----52059982120578-501012233025531011210113827356798767788998987871133778----984
Q gi|254780854|r   83 ----YNRRLRVKIAVAEG-KSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPV----TGF  153 (202)
Q Consensus        83 ----~n~ri~Vk~~v~e~-~~vpSi~~i~p~A~W~ERE~~DmfGI~F~gHPdlRRiL~d~~feGhPLRKDFPl----tG~  153 (202)
                          .|.||+||+.++++ +.||||++|||||||+|||+||||||.|+|||||||||+|++|+||||||||||    |||
T Consensus        80 ~~~~~~~rv~vk~~v~~~~p~ipSi~~i~p~A~w~ERE~~DmfGi~f~ghpdlrril~~~~~~g~PLRKDfpl~~~~~~~  159 (207)
T 3i9v_5           80 WKDGDGSRFFVRVYVPEEDPRLPTVTDLWGSANFLEREVYDLFGIVFEGHPDLRKILTPEDLEGHPLRKDYPLGETPTLF  159 (207)
T ss_dssp             SSSCCCCCEEEEEEECSSCCBCCCCTTTCSTHHHHHHHHHHTSCCBCTTCSCCCCCSSCTTCCSCTTSTTSCCCCCCEEC
T ss_pred             CCCCCCEEEEEEEECCCCCCCCCCEECCCCCCCCCCEEEEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             66677608999984676567667710305799812322026127676799998454588899989877674688866652


Q ss_pred             EEEEE----------CHHHCEEECCCCEEEEHHHCCCCCCCCCCCCCCC
Q ss_conf             47887----------6211513126642202221276656323453345
Q gi|254780854|r  154 VELHY----------DDKVKKVVYRPVELMQEHRDYDFLSPWEGVNSLF  192 (202)
Q Consensus       154 ~evry----------d~~~k~v~~epv~l~q~~r~f~~~spwe~~~~~~  192 (202)
                      +|+||          +..+++|+|+|+.+.|+||+     +|+|++++.
T Consensus       160 ~e~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~r~-----~~~~~~~~~  203 (207)
T 3i9v_5          160 REGRYIIPAEFRAALTGKDPGLTFYKGGSRKGYRS-----LWADLKKAR  203 (207)
T ss_dssp             TTSCEECGGGTCCSCCSSCCCSSSCCCGGGSCCCC-----CC-------
T ss_pred             EEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCC-----HHCCCHHHH
T ss_conf             46675586424444456565411301553635304-----111601320

Probab=100.00  E-value=0  Score=304.75  Aligned_cols=129  Identities=33%  Similarity=0.641  Sum_probs=117.8

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEEECCCEEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCC-CCEEEEEEEEECC
Q ss_conf             799999999986153114579847959999868989999999871878980147513256887777-8579999966157
Q gi|254780854|r    4 KIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRS-NRFDVVYHFLSPK   82 (202)
Q Consensus         4 ~L~~L~~~L~~~l~~~I~~~~~~~~el~i~V~~~~l~~vl~~LKdd~~~~F~~LiDItaVDyp~~~-~RFeVvY~LlS~~   82 (202)
                      .|+++.+.+...|+++|+++++.+|+++|.|++++|.++|++||+++.|+|++|+||||||||++. .||++||||+|++
T Consensus        83 ~L~~~~~~~~~~~~~aI~~vvv~rGeltl~V~~e~L~~V~~~LKdd~~l~Fe~L~dltgVDype~~~~rf~vVYhL~S~~  162 (213)
T 3mcr_A           83 ALERSLKEIGTPYDTAISRVVVDRGEITFHVQREHLLDVATRLRDDPALRFELCLGVTGVHYPEDEGNELHAVYALRSIT  162 (213)
T ss_dssp             HHHHHHHHTTCCHHHHEEEEEEETTEEEEEECGGGHHHHHHHHHHCTTTCCCEEEEEEEEECTTSTTCCEEEEEEEEETT
T ss_pred             HHHHHHHHHHCHHHHHHEEEEEECCEEEEEECHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEECCC
T ss_conf             99999987301032130389998998999985999999999996288999763100200716765688358999830366


Q ss_pred             CCCEEEEEEEECCCC-EEECCCCCEECCCCEECCCHHHCCCEECCCCCCCC
Q ss_conf             520599821205785-01012233025531011210113827356798767
Q gi|254780854|r   83 YNRRLRVKIAVAEGK-SVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRR  132 (202)
Q Consensus        83 ~n~ri~Vk~~v~e~~-~vpSi~~i~p~A~W~ERE~~DmfGI~F~gHPdlRR  132 (202)
                      +|.||+||+.++++. .||||++|||+|||||||+||||||.|+|||||||
T Consensus       163 ~n~rIrlkv~v~~~dP~IPSI~~I~psAnW~ERE~yDMFGI~F~GHPdLrR  213 (213)
T 3mcr_A          163 HNYEIRLEVSCPDSDPHIPSIVSVYPTNDWHEREAWDFFGIIFDGHPALTR  213 (213)
T ss_dssp             TTEEEEEEEEECTTSCEEECCTTTCTTHHHHHHHHHHHHCCEEETCGGGC-
T ss_pred             CCCEEEEEECCCCCCCCCCEEHHHCCCCCHHHHHHHHCCCEEECCCCCCCC
T ss_conf             661368860346688968704210257677688776136801788998889

class: Alpha and beta proteins (a+b)
fold: Nqo5-like
superfamily: Nqo5-like
family: Nqo5-like
domain: NADH-quinone oxidoreductase chain 5, Nqo5
species: Thermus thermophilus [TaxId: 274]

 Score =  119 bits (300), Expect = 1e-28
 Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 15/173 (8%)

Query: 25  NSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLS----RSNRFDVVYHFLS 80
           N +G L + +         +  +      F  + D+ G+D+L+    R  RF VVY  +S
Sbjct: 20  NGLGNLWVVLPRERFKEEMAHYKA---MGFNFLADIVGLDYLTYPDPRPERFAVVYELVS 76

Query: 81  PKY-----NRRLRVKIAV-AEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRIL 134
                     R  V++ V  E   +P++  ++  A++ EREV+D++GI FEGHPDLR+IL
Sbjct: 77  LPGWKDGDGSRFFVRVYVPEEDPRLPTVTDLWGSANFLEREVYDLFGIVFEGHPDLRKIL 136

Query: 135 TDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           T    EGHPLRKD+P+     L  +   + ++          +D        G
Sbjct: 137 TPEDLEGHPLRKDYPLGETPTLFRE--GRYIIPAEFRAALTGKDPGLTFYKGG 187

class: Alpha and beta proteins (a+b)
fold: Nqo5-like
superfamily: Nqo5-like
family: Nqo5-like
domain: NADH-quinone oxidoreductase chain 5, Nqo5
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=0  Score=330.13  Aligned_cols=149  Identities=35%  Similarity=0.631  Sum_probs=127.5

Q ss_pred             HHHHHHHHCCCCEEEEEEECCCEEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCC----CCCCEEEEEEEEECC-
Q ss_conf             999999861531145798479599998689899999998718789801475132568877----778579999966157-
Q gi|254780854|r    8 LGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLS----RSNRFDVVYHFLSPK-   82 (202)
Q Consensus         8 L~~~L~~~l~~~I~~~~~~~~el~i~V~~~~l~~vl~~LKdd~~~~F~~LiDItaVDyp~----~~~RFeVvY~LlS~~-   82 (202)
                      |.+.|++.....+.......|+++|.|+++++.+++++||+   ++|++|+|||||||+.    .++||+|||||+|+. 
T Consensus         3 le~~Le~a~~~g~~ve~~~~g~l~I~V~~e~l~evl~~LKe---~gF~~L~dITaVD~~~~~e~~~~rfevvYhL~S~~~   79 (196)
T d2fug51           3 LERVLEEARAKGYPIEDNGLGNLWVVLPRERFKEEMAHYKA---MGFNFLADIVGLDYLTYPDPRPERFAVVYELVSLPG   79 (196)
T ss_dssp             HHHHHHHHHTTTCCEEECSSSCEEEECCSTTHHHHHHHTTT---TTCCCCCCEEEEECTTCSSCCSSSEEEEEEEECCTT
T ss_pred             HHHHHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHH---CCCCCEEEEEEECCCCCCCCCCCEEEEEEEEEEEEE
T ss_conf             89999986733770101348838999859999999999986---799816578848688767676640699987888864


Q ss_pred             ----CCCEEEEEEEECC-CCEEECCCCCEECCCCEECCCHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC----C
Q ss_conf             ----5205998212057-850101223302553101121011382735679876778899898787113377898----4
Q gi|254780854|r   83 ----YNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTG----F  153 (202)
Q Consensus        83 ----~n~ri~Vk~~v~e-~~~vpSi~~i~p~A~W~ERE~~DmfGI~F~gHPdlRRiL~d~~feGhPLRKDFPltG----~  153 (202)
                          .+.+|+|||.+++ ++.||||++|||+|||+|||+||||||.|+|||||||||++++|+||||||||||.|    |
T Consensus        80 ~~~~~~~~v~vkv~vp~~~p~ipSi~~i~p~A~w~ERE~~dmfGi~f~ghpd~rr~llpd~~~g~PlRKdfpl~~~~~~~  159 (196)
T d2fug51          80 WKDGDGSRFFVRVYVPEEDPRLPTVTDLWGSANFLEREVYDLFGIVFEGHPDLRKILTPEDLEGHPLRKDYPLGETPTLF  159 (196)
T ss_dssp             SSSCCCCEEEEEEEECSSCCCCCCCCC-----CCCHHHHHHHHHHSSCCCSSCSCCCCSSCSSSCSSSTTSCCCCCCEEC
T ss_pred             CCCCCCCEEEEEEEECCCCCEEEEEECCEECCEEEECCCCEEECEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             04788638999997235663122342318065101303526608697898888565579999989877676688865555


Q ss_pred             EEEEEC
Q ss_conf             478876
Q gi|254780854|r  154 VELHYD  159 (202)
Q Consensus       154 ~evryd  159 (202)
                      .|+||+
T Consensus       160 ~~~~~~  165 (196)
T d2fug51         160 REGRYI  165 (196)
T ss_dssp             TTSCEE
T ss_pred             CCCCCC
T ss_conf             255307

 Score =  126 bits (319), Expect = 1e-30
 Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 13/143 (9%)

Query: 7   DLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFL 66
            L   +  + +       N +G L + +         +  +      F  + D+ G+D+L
Sbjct: 2   RLERVLEEARAKGYPIEDNGLGNLWVVLPRERFKEEMAHYKAMG---FNFLADIVGLDYL 58

Query: 67  SRSN----RFDVVYHFLSPKY-----NRRLRVKIAVAEGK-SVPSIVGIYPGADWFEREV 116
           +  +    RF VVY  +S          R  V++ V E    +P++  ++  A++ EREV
Sbjct: 59  TYPDPRPERFAVVYELVSLPGWKDGDGSRFFVRVYVPEEDPRLPTVTDLWGSANFLEREV 118

Query: 117 WDMYGIFFEGHPDLRRILTDYGF 139
           +D++GI FEGHPDLR+ILT    
Sbjct: 119 YDLFGIVFEGHPDLRKILTPEDL 141

Probab=100.00  E-value=6.8e-40  Score=263.59  Aligned_cols=130  Identities=30%  Similarity=0.542  Sum_probs=120.0

Q ss_pred             HHHHHHHHHCCCCEEEEEEECCCEEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCC----CCEEEEEEEEECC
Q ss_conf             999999986153114579847959999868989999999871878980147513256887777----8579999966157
Q gi|254780854|r    7 DLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRS----NRFDVVYHFLSPK   82 (202)
Q Consensus         7 ~L~~~L~~~l~~~I~~~~~~~~el~i~V~~~~l~~vl~~LKdd~~~~F~~LiDItaVDyp~~~----~RFeVvY~LlS~~   82 (202)
                      ++.+.|++.+++.+.......+++++.|+++.+.+++.+||+.   +|.+|++|||+||+++.    .+|+++|||.|++
T Consensus         2 ~l~~~l~~~~~~~~~~~~~~~~~~~v~i~~~~l~~v~~~Lk~~---~~~~l~~i~~~D~~~~~~~~~~~f~vvY~l~s~~   78 (141)
T 3i9v_5            2 RLERVLEEARAKGYPIEDNGLGNLWVVLPRERFKEEMAHYKAM---GFNFLADIVGLDYLTYPDPRPERFAVVYELVSLP   78 (141)
T ss_dssp             TTHHHHHHHHHTTCCCCBCTTSCBEEECCHHHHHHHHHHHHHT---TCCCEEEEEEEECTTCSSCCSSSEEEEEEECCCT
T ss_pred             CHHHHHHHHHHCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHC---CCCCEEEEEEECCCCCCCCCCCEEEEEEEEEEEE
T ss_conf             5899999877426721103588289998699999999999867---9982646887767876777764179999998654


Q ss_pred             -----CCCEEEEEEEECC-CCEEECCCCCEECCCCEECCCHHHCCCEECCCCCCCCCCCCCCC
Q ss_conf             -----5205998212057-85010122330255310112101138273567987677889989
Q gi|254780854|r   83 -----YNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGF  139 (202)
Q Consensus        83 -----~n~ri~Vk~~v~e-~~~vpSi~~i~p~A~W~ERE~~DmfGI~F~gHPdlRRiL~d~~f  139 (202)
                           .|.+|+||+.+++ ++.+|||++|||+|+|+|||+||||||.|+|||||||||+|+||
T Consensus        79 ~~~~~~~~~v~v~~~v~~~~p~ipSi~~i~~~A~w~ERE~~DmfGI~f~ghPdlrrlll~ddf  141 (141)
T 3i9v_5           79 GWKDGDGSRFFVRVYVPEEDPRLPTVTDLWGSANFLEREVYDLFGIVFEGHPDLRKILTPEDL  141 (141)
T ss_dssp             TSSSCCCCCEEEEEEECSSCCBCCCCTTTCSTHHHHHHHHHHTSCCBCTTCSCCCCCSSCTTC
T ss_pred             CCCCCCCEEEEEEEECCCCCCEEEEEECCCCCCCCCEECCCEECCEEECCCCCCCCCCCCCCC
T ss_conf             256777508999861365553010001308275113301537438797898888463579899