HHsearch alignment for GI: 254780854 and conserved domain: pfam00329

>pfam00329 Complex1_30kDa Respiratory-chain NADH dehydrogenase, 30 Kd subunit.
Probab=100.00  E-value=6.9e-38  Score=251.78  Aligned_cols=102  Identities=50%  Similarity=0.992  Sum_probs=95.6

Q ss_pred             HHHHHHHHCCCCCCCEEEECCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEEC-CCCEEECCCCCEECCCCEECCCHHH
Q ss_conf             999998718789801475132568877778579999966157520599821205-7850101223302553101121011
Q gi|254780854|r   41 SLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVA-EGKSVPSIVGIYPGADWFEREVWDM  119 (202)
Q Consensus        41 ~vl~~LKdd~~~~F~~LiDItaVDyp~~~~RFeVvY~LlS~~~n~ri~Vk~~v~-e~~~vpSi~~i~p~A~W~ERE~~Dm  119 (202)
T Consensus         1 ~~~~~l~~~---g~~~L~~i~~~D~~~~-~~~~~~Y~~~~~~~~~~v~l~~~v~~~~p~vpSi~~i~p~A~w~ERE~~Dm   76 (103)
T pfam00329         1 EVARFLKED---GFDRLSDLTGVDYPEE-GRFEVVYHLASIGDGERVRLKVKLPRDDPEIPSITDIFPGANWYEREVYDM   76 (103)
T ss_pred             CHHHHHHHC---CCCEEEEEEEEECCCC-CEEEEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCEECCCHHHHHHHEE
T ss_conf             977999768---9995878886988999-989999999978899499999993887871385312275788877223161


Q ss_pred             CCCEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             382735679876778899898787113
Q gi|254780854|r  120 YGIFFEGHPDLRRILTDYGFEGHPLRK  146 (202)
Q Consensus       120 fGI~F~gHPdlRRiL~d~~feGhPLRK  146 (202)
T Consensus        77 fGi~f~ghPd~rrlll~~~~~~~PLrK  103 (103)
T pfam00329        77 FGIVFEGHPDLRRLLLPEDWPGHPLRK  103 (103)
T ss_pred             CCEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf             263768999972414888998998789