HHsearch alignment for GI: 254780854 and conserved domain: pfam00329
>pfam00329 Complex1_30kDa Respiratory-chain NADH dehydrogenase, 30 Kd subunit.
Probab=100.00 E-value=6.9e-38 Score=251.78 Aligned_cols=102 Identities=50% Similarity=0.992 Sum_probs=95.6
Q ss_pred HHHHHHHHCCCCCCCEEEECCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEEC-CCCEEECCCCCEECCCCEECCCHHH
Q ss_conf 999998718789801475132568877778579999966157520599821205-7850101223302553101121011
Q gi|254780854|r 41 SLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVA-EGKSVPSIVGIYPGADWFEREVWDM 119 (202)
Q Consensus 41 ~vl~~LKdd~~~~F~~LiDItaVDyp~~~~RFeVvY~LlS~~~n~ri~Vk~~v~-e~~~vpSi~~i~p~A~W~ERE~~Dm 119 (202)
T Consensus 1 ~~~~~l~~~---g~~~L~~i~~~D~~~~-~~~~~~Y~~~~~~~~~~v~l~~~v~~~~p~vpSi~~i~p~A~w~ERE~~Dm 76 (103)
T pfam00329 1 EVARFLKED---GFDRLSDLTGVDYPEE-GRFEVVYHLASIGDGERVRLKVKLPRDDPEIPSITDIFPGANWYEREVYDM 76 (103)
T ss_pred CHHHHHHHC---CCCEEEEEEEEECCCC-CEEEEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCEECCCHHHHHHHEE
T ss_conf 977999768---9995878886988999-989999999978899499999993887871385312275788877223161
Q ss_pred CCCEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 382735679876778899898787113
Q gi|254780854|r 120 YGIFFEGHPDLRRILTDYGFEGHPLRK 146 (202)
Q Consensus 120 fGI~F~gHPdlRRiL~d~~feGhPLRK 146 (202)
T Consensus 77 fGi~f~ghPd~rrlll~~~~~~~PLrK 103 (103)
T pfam00329 77 FGIVFEGHPDLRRLLLPEDWPGHPLRK 103 (103)
T ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 263768999972414888998998789