HHsearch alignment of GI: 254780854 and MMDB domain: 3i9v_5_1-141
>3i9v_5 (5:1-141) NADH-quinone oxidoreductase subunit 5; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_5* 3iam_5* 3ias_5*
Probab=100.00 E-value=6.8e-40 Score=263.59 Aligned_cols=130 Identities=30% Similarity=0.542 Sum_probs=120.0
Q ss_pred HHHHHHHHHCCCCEEEEEEECCCEEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCC----CCEEEEEEEEECC
Q ss_conf 999999986153114579847959999868989999999871878980147513256887777----8579999966157
Q gi|254780854|r 7 DLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRS----NRFDVVYHFLSPK 82 (202)
Q Consensus 7 ~L~~~L~~~l~~~I~~~~~~~~el~i~V~~~~l~~vl~~LKdd~~~~F~~LiDItaVDyp~~~----~RFeVvY~LlS~~ 82 (202)
++.+.|++.+++.+.......+++++.|+++.+.+++.+||+. +|.+|++|||+||+++. .+|+++|||.|++
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~~v~i~~~~l~~v~~~Lk~~---~~~~l~~i~~~D~~~~~~~~~~~f~vvY~l~s~~ 78 (141)
T 3i9v_5 2 RLERVLEEARAKGYPIEDNGLGNLWVVLPRERFKEEMAHYKAM---GFNFLADIVGLDYLTYPDPRPERFAVVYELVSLP 78 (141)
T ss_dssp TTHHHHHHHHHTTCCCCBCTTSCBEEECCHHHHHHHHHHHHHT---TCCCEEEEEEEECTTCSSCCSSSEEEEEEECCCT
T ss_pred CHHHHHHHHHHCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHC---CCCCEEEEEEECCCCCCCCCCCEEEEEEEEEEEE
T ss_conf 5899999877426721103588289998699999999999867---9982646887767876777764179999998654
Q ss_pred -----CCCEEEEEEEECC-CCEEECCCCCEECCCCEECCCHHHCCCEECCCCCCCCCCCCCCC
Q ss_conf -----5205998212057-85010122330255310112101138273567987677889989
Q gi|254780854|r 83 -----YNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGF 139 (202)
Q Consensus 83 -----~n~ri~Vk~~v~e-~~~vpSi~~i~p~A~W~ERE~~DmfGI~F~gHPdlRRiL~d~~f 139 (202)
.|.+|+||+.+++ ++.+|||++|||+|+|+|||+||||||.|+|||||||||+|+||
T Consensus 79 ~~~~~~~~~v~v~~~v~~~~p~ipSi~~i~~~A~w~ERE~~DmfGI~f~ghPdlrrlll~ddf 141 (141)
T 3i9v_5 79 GWKDGDGSRFFVRVYVPEEDPRLPTVTDLWGSANFLEREVYDLFGIVFEGHPDLRKILTPEDL 141 (141)
T ss_dssp TSSSCCCCCEEEEEEECSSCCBCCCCTTTCSTHHHHHHHHHHTSCCBCTTCSCCCCCSSCTTC
T ss_pred CCCCCCCEEEEEEEECCCCCCEEEEEECCCCCCCCCEECCCEECCEEECCCCCCCCCCCCCCC
T ss_conf 256777508999861365553010001308275113301537438797898888463579899