BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780854|ref|YP_003065267.1| NADH dehydrogenase subunit C
[Candidatus Liberibacter asiaticus str. psy62]
         (202 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|154248550|ref|YP_001419508.1| NADH (or F420H2) dehydrogenase, subunit C [Xanthobacter
           autotrophicus Py2]
 gi|218534340|sp|A7IPA5|NUOC_XANP2 RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|154162635|gb|ABS69851.1| NADH (or F420H2) dehydrogenase, subunit C [Xanthobacter
           autotrophicus Py2]
          Length = 209

 Score =  269 bits (688), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 108/198 (54%), Positives = 143/198 (72%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + DL  ++  + SG+V  ++ + GEL+L +D   +V + +FLRDDP C F  I+D+
Sbjct: 1   MDETLNDLAAHVSAALSGAVLGSLVAHGELTLQIDPAQIVKVATFLRDDPACLFHCIVDV 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
           CGVD+ +R  RFDVVYH LS K N R+R+K+   E   VPSI  ++PGA+WFERE +DMY
Sbjct: 61  CGVDYPAREKRFDVVYHLLSLKQNVRIRLKVETDEDTPVPSICSVFPGANWFEREAYDMY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHP+LRR+LTDYGF+GHPLRKDFP TGFVE+ YDD+ K+VVY PV L QE R++D
Sbjct: 121 GILFTGHPELRRLLTDYGFDGHPLRKDFPTTGFVEVRYDDEQKRVVYEPVRLPQEFRNFD 180

Query: 181 FLSPWEGVNSLFAKEDSK 198
           FLSPWEGV  +   ++  
Sbjct: 181 FLSPWEGVEYVLPGDEKA 198


>gi|158423293|ref|YP_001524585.1| NADH-ubiquinone dehydrogenase chain C 1 [Azorhizobium caulinodans
           ORS 571]
 gi|218534279|sp|A8I3Y9|NUOC_AZOC5 RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|158330182|dbj|BAF87667.1| NADH-ubiquinone dehydrogenase chain C 1 [Azorhizobium caulinodans
           ORS 571]
          Length = 211

 Score =  268 bits (686), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 105/198 (53%), Positives = 143/198 (72%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   ++DL  ++  +  G+V     + GEL+L+     ++ L +FLRDDP C F  I+D+
Sbjct: 1   MDETLKDLAAHVTGALPGAVVAHKIAYGELTLETTPDHILKLATFLRDDPSCLFTCIVDV 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
           CG D+ +R  RF+VVYH LS K N R+RVK++  E   VPS+ GI+PGA+WFERE +D+Y
Sbjct: 61  CGADYPAREQRFEVVYHLLSLKQNARVRVKLSAGEETLVPSVTGIWPGANWFEREAYDLY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHP+LRR+LTDYGF+GHPLRKDFP+TGFVE+ YDD++K+VVY PV L QE R++D
Sbjct: 121 GILFTGHPELRRLLTDYGFDGHPLRKDFPLTGFVEVRYDDELKRVVYEPVRLAQEFRNFD 180

Query: 181 FLSPWEGVNSLFAKEDSK 198
           FLSPWEGV  +   ++  
Sbjct: 181 FLSPWEGVEYILPGDEKA 198


>gi|307942119|ref|ZP_07657470.1| NADH-quinone oxidoreductase chain 5 [Roseibium sp. TrichSKD4]
 gi|307774405|gb|EFO33615.1| NADH-quinone oxidoreductase chain 5 [Roseibium sp. TrichSKD4]
          Length = 201

 Score =  268 bits (684), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 108/198 (54%), Positives = 141/198 (71%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   +++L ++I      SV       GEL++ V   D++ +  +LRD+  C FVN+ D+
Sbjct: 1   MDEALKELAEHISLGLGDSVLSTKVDYGELTISVAASDILDVVRYLRDNSACKFVNLTDV 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
           CGVD+ +R  RFDVVYHFLSP  N+R+RVK+   E   VPSI  I+PGA+WFERE +DMY
Sbjct: 61  CGVDWPAREKRFDVVYHFLSPFQNQRIRVKVMTDEDTPVPSITPIFPGAEWFEREAYDMY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGF+GHPLRKDFP+TGFVE+ YDD+ K+VVY PV L QE R++D
Sbjct: 121 GILFSGHPDLRRILTDYGFDGHPLRKDFPLTGFVEVRYDDEKKRVVYEPVRLNQEFRNFD 180

Query: 181 FLSPWEGVNSLFAKEDSK 198
           FLSPWEG + +   ++  
Sbjct: 181 FLSPWEGTDYVLTGDEKA 198


>gi|260434180|ref|ZP_05788151.1| NADH-quinone oxidoreductase subunit c [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260418008|gb|EEX11267.1| NADH-quinone oxidoreductase subunit c [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 201

 Score =  267 bits (682), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 100/199 (50%), Positives = 139/199 (69%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   +++LG +I       V     + GEL+++V   +LV    FL+ D +C F  ++D+
Sbjct: 1   MSEALKELGAHIELKRPDCVLSWAVAHGELTVEVSPSNLVEFVEFLKTDQNCKFSTLVDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
             VD+  R+ RFDVVYHFLS   N+R+R++I+V E   VPSIV ++P A+WFEREV+DM+
Sbjct: 61  TAVDYPERAKRFDVVYHFLSMYQNQRIRIRISVREEDMVPSIVDVHPSANWFEREVFDMF 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGF G+PLRKDFP TG+ E+ YD+  K+VVY PV L+QE+R +D
Sbjct: 121 GILFSGHPDLRRILTDYGFRGYPLRKDFPTTGYTEVRYDEAQKRVVYEPVSLVQEYRQFD 180

Query: 181 FLSPWEGVNSLFAKEDSKD 199
           F+SPWEG N +   ++ K+
Sbjct: 181 FMSPWEGANYILPGDEKKE 199


>gi|89067784|ref|ZP_01155238.1| NADH dehydrogenase subunit C [Oceanicola granulosus HTCC2516]
 gi|89046754|gb|EAR52809.1| NADH dehydrogenase subunit C [Oceanicola granulosus HTCC2516]
          Length = 209

 Score =  266 bits (680), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 99/201 (49%), Positives = 132/201 (65%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + +LG +I       V       GEL++ V   +L     F++ D  C F  ++D+
Sbjct: 7   MTDALNELGGHIEARRPDCVAAWQVDHGELTVTVALANLPGFVEFIKTDATCRFSTLVDI 66

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
             VD   R+ RFDVVYHFLS   N+R+R++  V E   VPSI GI+P A+WFERE++DM+
Sbjct: 67  TAVDHPGRAKRFDVVYHFLSMYQNQRIRLRTLVREEDLVPSITGIHPSANWFEREIFDMF 126

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRR+LTDYGF GHPLRKDFP TG+ E+ YD+  K+VVY PV+L+QE+R +D
Sbjct: 127 GILFSGHPDLRRLLTDYGFRGHPLRKDFPTTGYTEVRYDEVQKRVVYEPVKLVQEYRQFD 186

Query: 181 FLSPWEGVNSLFAKEDSKDDM 201
           FLSPWEG N +   +D  D+ 
Sbjct: 187 FLSPWEGANYILPGDDKADEA 207


>gi|126736071|ref|ZP_01751815.1| NADH dehydrogenase subunit C [Roseobacter sp. CCS2]
 gi|126714628|gb|EBA11495.1| NADH dehydrogenase subunit C [Roseobacter sp. CCS2]
          Length = 203

 Score =  266 bits (679), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 96/202 (47%), Positives = 138/202 (68%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   +++LG ++    +  V     +  EL++ V    LVS   FL++D  C F +++D+
Sbjct: 1   MTEALQELGTHLELKRTDCVLSWDVAHDELTVTVAPSSLVSFVEFLKNDATCRFSSLVDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
             VD+ SR+ RFDVVYHFLS   N R+R+++ + E   +PSI+ ++P A+WFEREV+DM+
Sbjct: 61  TAVDYPSRAKRFDVVYHFLSMYQNHRIRLRVQIREEDMLPSIMSVHPSANWFEREVFDMF 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGF GHPLRKDFP TG+ E+ YD+  K+VVY PV L+QE+R +D
Sbjct: 121 GILFSGHPDLRRILTDYGFRGHPLRKDFPTTGYTEVRYDEVQKRVVYEPVSLVQEYRQFD 180

Query: 181 FLSPWEGVNSLFAKEDSKDDMS 202
           F+SPWEG   +   ++  D+ +
Sbjct: 181 FMSPWEGAEYILPGDEKTDEKA 202


>gi|159043858|ref|YP_001532652.1| NADH dehydrogenase subunit C [Dinoroseobacter shibae DFL 12]
 gi|218534283|sp|A8LIT7|NUOC_DINSH RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|157911618|gb|ABV93051.1| NADH (or F420H2) dehydrogenase, subunit C [Dinoroseobacter shibae
           DFL 12]
          Length = 215

 Score =  265 bits (678), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 96/202 (47%), Positives = 133/202 (65%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   +++L  +I       V     +  EL++      +V L +FL+ D  C F  +ID+
Sbjct: 10  MTAALQELAAHIEMKRPDCVISTEIAHDELTVVATPNSIVGLVAFLKTDATCKFSTLIDI 69

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
             VD+  R+ RFDVVYHFLS   N R+R+++ V E   VPSI+  +P A+WFEREV+DM+
Sbjct: 70  TAVDYPERAQRFDVVYHFLSMYQNHRIRIRVPVREDDIVPSIISEHPSANWFEREVFDMF 129

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGF G+PLRKDFP TG+ E+ YD++ K+VVY PV L+QE+R +D
Sbjct: 130 GILFSGHPDLRRILTDYGFRGYPLRKDFPTTGYTEVRYDEEKKRVVYEPVNLVQEYRQFD 189

Query: 181 FLSPWEGVNSLFAKEDSKDDMS 202
           F+SPWEG   +   ++  DD +
Sbjct: 190 FMSPWEGAEYILPGDEKTDDKA 211


>gi|163759541|ref|ZP_02166626.1| NADH-ubiquinone oxidoreductase chain C protein [Hoeflea
           phototrophica DFL-43]
 gi|162283138|gb|EDQ33424.1| NADH-ubiquinone oxidoreductase chain C protein [Hoeflea
           phototrophica DFL-43]
          Length = 200

 Score =  265 bits (677), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 115/199 (57%), Positives = 144/199 (72%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   ++DL DY+       +  +  + GEL+L     +L+ L +FLRDD  C FVN ID 
Sbjct: 1   MSDALKDLSDYLGEIRGNLIESSEIAYGELTLIAQPANLIELMTFLRDDAQCQFVNFIDC 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
           CGVD+  R+ RFDVVYH LSP+ N R+RVK+A AE   VPS+  +YPGADWFERE +D+Y
Sbjct: 61  CGVDWPGRAERFDVVYHLLSPRQNIRIRVKVATAEDAPVPSLTAVYPGADWFEREAYDLY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGFEGHPLRKDFP+TGFVE+ YDD+VK+VVY PVEL QE R++D
Sbjct: 121 GILFTGHPDLRRILTDYGFEGHPLRKDFPLTGFVEVRYDDEVKRVVYEPVELKQEFRNFD 180

Query: 181 FLSPWEGVNSLFAKEDSKD 199
           FLSPWEG + +   ++   
Sbjct: 181 FLSPWEGTDYVLPGDEKAK 199


>gi|259418836|ref|ZP_05742753.1| NADH-quinone oxidoreductase subunit c [Silicibacter sp. TrichCH4B]
 gi|259345058|gb|EEW56912.1| NADH-quinone oxidoreductase subunit c [Silicibacter sp. TrichCH4B]
          Length = 201

 Score =  264 bits (676), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 99/198 (50%), Positives = 136/198 (68%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M+  ++DLG  I       V     + GEL++DV   ++  L  FLR D  C F  ++D+
Sbjct: 1   MIEALQDLGHQIEAKRPDCVLSWDIAHGELNIDVKPANIAGLVEFLRVDSACRFSTLVDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
             VD+  R+ RFDVVYH LS   N R+R+++AV E   VPSIV ++P A+WFEREV+DM+
Sbjct: 61  TAVDYPERTKRFDVVYHLLSMYQNHRIRLRVAVREEDMVPSIVDVHPSANWFEREVFDMF 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRR+LTDYGF GHPLRKDFP TG+ E+ YD+  K+VVY PV+L+QE+R +D
Sbjct: 121 GILFTGHPDLRRLLTDYGFRGHPLRKDFPTTGYTEVRYDEAQKRVVYEPVKLVQEYRQFD 180

Query: 181 FLSPWEGVNSLFAKEDSK 198
           F+SPWEG + +   ++ +
Sbjct: 181 FMSPWEGADYILPGDEKE 198


>gi|150396113|ref|YP_001326580.1| NADH dehydrogenase subunit C [Sinorhizobium medicae WSM419]
 gi|218534338|sp|A6U7W5|NUOC_SINMW RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|150027628|gb|ABR59745.1| NADH (or F420H2) dehydrogenase, subunit C [Sinorhizobium medicae
           WSM419]
          Length = 201

 Score =  264 bits (676), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 112/199 (56%), Positives = 142/199 (71%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + +L  YI  +    V  +    GEL+L      L++L +FLRDD  C FV+ ID+
Sbjct: 1   MSEALNELASYIREARGALVAGSEVRYGELTLTTKAESLIALLTFLRDDVQCGFVSFIDV 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
           CGVD+  R +RFDVVYH LSP+ N+R+RVK+A  E + VPSI  +YPGADWFERE +DMY
Sbjct: 61  CGVDYPQRPDRFDVVYHLLSPRQNQRIRVKVATGENEPVPSITSVYPGADWFEREAYDMY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGFEG+PLRKDFP+TGFVE+ YD++ K+VVY PVEL QE R++D
Sbjct: 121 GILFTGHPDLRRILTDYGFEGYPLRKDFPLTGFVEVRYDNEAKRVVYEPVELKQEFRNFD 180

Query: 181 FLSPWEGVNSLFAKEDSKD 199
           FLSPWEG   +   ++   
Sbjct: 181 FLSPWEGTEYVLPGDEKAK 199


>gi|254466123|ref|ZP_05079534.1| NADH-quinone oxidoreductase chain c [Rhodobacterales bacterium Y4I]
 gi|206687031|gb|EDZ47513.1| NADH-quinone oxidoreductase chain c [Rhodobacterales bacterium Y4I]
          Length = 201

 Score =  264 bits (674), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 99/198 (50%), Positives = 137/198 (69%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   +++LG  I       V     S  EL++DV   ++  L  FL+ DP+C F  ++D+
Sbjct: 1   MTDALKELGAQIEAKRPDCVVAWSVSFDELTIDVTPSNIAGLVEFLKSDPNCKFSTLVDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
             VD+  R+ RFDVVYHFLS   N+R+R++ AV E + VPSIV ++P A+WFEREV+DM+
Sbjct: 61  TAVDYPDRAKRFDVVYHFLSMYRNQRIRLRAAVREDEMVPSIVKVHPSANWFEREVYDMF 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGF G+PLRKDFP TG+ E+ YD+  K+VVY PV+L+QE+R +D
Sbjct: 121 GILFSGHPDLRRILTDYGFRGYPLRKDFPTTGYTEVRYDEVQKRVVYEPVKLVQEYRQFD 180

Query: 181 FLSPWEGVNSLFAKEDSK 198
           F+SPWEG   +   ++ +
Sbjct: 181 FMSPWEGAEYILPGDEKE 198


>gi|86137599|ref|ZP_01056176.1| NADH dehydrogenase subunit C [Roseobacter sp. MED193]
 gi|85825934|gb|EAQ46132.1| NADH dehydrogenase subunit C [Roseobacter sp. MED193]
          Length = 197

 Score =  264 bits (674), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 96/197 (48%), Positives = 133/197 (67%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   +++LG  I       V     + GEL++DV   ++  L  FL+ D  C F +++D+
Sbjct: 1   MTEALQELGTQIAAKRPDCVLSWDVAHGELNVDVAPANIAGLVEFLKSDSSCKFSSLVDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
             VD+  R  RFDVVYH LS   N+R+R++++V E   VPSIV ++P A+WFEREV+DM+
Sbjct: 61  TAVDYPERGKRFDVVYHLLSMYQNQRIRLRVSVREDDMVPSIVDVHPSANWFEREVFDMF 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGF G+PLRKDFP TG+ E+ YD+  K+VVY PV L+QE+R +D
Sbjct: 121 GILFSGHPDLRRILTDYGFRGYPLRKDFPTTGYTEVRYDEAEKRVVYEPVSLVQEYRQFD 180

Query: 181 FLSPWEGVNSLFAKEDS 197
           F+SPWEG   +   ++ 
Sbjct: 181 FMSPWEGAEYILPGDEK 197


>gi|222085577|ref|YP_002544107.1| NADH-ubiquinone oxidoreductase chain C protein [Agrobacterium
           radiobacter K84]
 gi|254767808|sp|B9JD44|NUOC_AGRRK RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|221723025|gb|ACM26181.1| NADH-ubiquinone oxidoreductase chain C protein [Agrobacterium
           radiobacter K84]
          Length = 200

 Score =  263 bits (672), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 112/199 (56%), Positives = 141/199 (70%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + +L  Y+       +  +    GEL++     ++++L +FLRDD  C FVN+ D+
Sbjct: 1   MSEALNELATYLTEVRGALISSSEIKYGELNVTTTAENVIALLTFLRDDAKCGFVNMTDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
           CGVD+  R +RFDVVYH LSPK N R+R+K+ VAE + VPS  GIYPGADWFERE WDMY
Sbjct: 61  CGVDWPQRPDRFDVVYHLLSPKKNLRIRIKVPVAEDQPVPSACGIYPGADWFERETWDMY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           G+ F GHPDLRRILTDYGFEGHPLRKDFP TGFVE+ YDD  K+VVY PVEL QE R++D
Sbjct: 121 GVLFTGHPDLRRILTDYGFEGHPLRKDFPTTGFVEVRYDDAAKRVVYEPVELKQEFRNFD 180

Query: 181 FLSPWEGVNSLFAKEDSKD 199
           FLSPWEG + +   ++   
Sbjct: 181 FLSPWEGTDYVLPGDEKAK 199


>gi|328543687|ref|YP_004303796.1| NADH-ubiquinone oxidoreductase chain c protein [polymorphum gilvum
           SL003B-26A1]
 gi|326413431|gb|ADZ70494.1| NADH-ubiquinone oxidoreductase chain c protein [Polymorphum gilvum
           SL003B-26A1]
          Length = 201

 Score =  263 bits (672), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 109/198 (55%), Positives = 142/198 (71%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + +LG++I  +   S+     + GEL+L V    ++ +  FLRDD  C FVN+ D+
Sbjct: 1   MDETLRELGEHIELALKDSLLSWKVAYGELTLTVSAPAILDVVRFLRDDASCKFVNLTDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
           CGVD+ +R  RFDVVYHFLSP  N+R+RVK++  E   VPS+  ++PGA+WFERE +DMY
Sbjct: 61  CGVDYPARDRRFDVVYHFLSPVQNQRIRVKLSTDEDTPVPSLTPLFPGAEWFEREAYDMY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGF+GHPLRKDFPVTGFVE+ YDD  K+VVY PV L QE R++D
Sbjct: 121 GILFSGHPDLRRILTDYGFDGHPLRKDFPVTGFVEVRYDDDKKRVVYEPVRLTQEFRNFD 180

Query: 181 FLSPWEGVNSLFAKEDSK 198
           FLSPWEG + +   ++  
Sbjct: 181 FLSPWEGTDYVLPGDEKA 198


>gi|220924007|ref|YP_002499309.1| NADH (or F420H2) dehydrogenase subunit C [Methylobacterium nodulans
           ORS 2060]
 gi|219948614|gb|ACL59006.1| NADH (or F420H2) dehydrogenase, subunit C [Methylobacterium
           nodulans ORS 2060]
          Length = 215

 Score =  262 bits (671), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 99/198 (50%), Positives = 137/198 (69%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +  ++ L D +  +   +V   V +  EL+L V+  ++V + + LRDDP C F   ID+C
Sbjct: 17  IEALQALSDRLAEALGSAVTDRVIAFDELTLTVEAQEIVRVLTHLRDDPLCAFRCFIDIC 76

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
           G D+  R+ RFDVVYH LS ++N R+RVK+   E   VPS++ +YP A+W+ERE +D+YG
Sbjct: 77  GADYPGRARRFDVVYHLLSLRHNLRIRVKVQTDEATPVPSVIAVYPAANWYERETYDLYG 136

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           I F GHPDLRR+LTDYGFEGHPLRKDFP+TGFVE+ YD    +VVY PV+L QE R++DF
Sbjct: 137 ILFSGHPDLRRLLTDYGFEGHPLRKDFPLTGFVEVRYDQDEGRVVYEPVKLTQEFRNFDF 196

Query: 182 LSPWEGVNSLFAKEDSKD 199
           LSPWEG + +   ++   
Sbjct: 197 LSPWEGTDYVLPGDEKAK 214


>gi|83951740|ref|ZP_00960472.1| NADH dehydrogenase subunit C [Roseovarius nubinhibens ISM]
 gi|83836746|gb|EAP76043.1| NADH dehydrogenase subunit C [Roseovarius nubinhibens ISM]
          Length = 202

 Score =  262 bits (671), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 100/201 (49%), Positives = 137/201 (68%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   +++LG YI    S  V       GEL++DV   ++  L  FLR+D  C F  ++D+
Sbjct: 1   MSEALKELGAYIEAKRSDCVLSWEVVHGELTVDVALANITGLVEFLRNDQTCRFSTLVDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
             VD+ +R  RFDVVYHFLS   N R+R++ AV E   VPSI  ++P A+WFEREV+DM+
Sbjct: 61  TAVDYPARPKRFDVVYHFLSMYQNHRIRLRAAVREEDMVPSITDVHPSANWFEREVFDMF 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGF G+PLRKDFP TG+ E+ YD+ +K+VVY PV L+QE+R +D
Sbjct: 121 GILFSGHPDLRRILTDYGFRGYPLRKDFPTTGYTEVRYDEALKRVVYEPVSLVQEYRQFD 180

Query: 181 FLSPWEGVNSLFAKEDSKDDM 201
           F+SPWEG   +   ++ +++ 
Sbjct: 181 FMSPWEGAEYILPGDEKQEEA 201


>gi|99080584|ref|YP_612738.1| NADH dehydrogenase subunit C [Ruegeria sp. TM1040]
 gi|122398270|sp|Q1GIP0|NUOC_SILST RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|99036864|gb|ABF63476.1| NADH (or F420H2) dehydrogenase subunit C [Ruegeria sp. TM1040]
          Length = 201

 Score =  262 bits (670), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 99/198 (50%), Positives = 135/198 (68%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M+  ++DLG  I       V     + GEL++DV   ++  L  FLR D  C F  ++D+
Sbjct: 1   MIEALQDLGHQIEAKRPECVLSWDIAHGELNIDVKPANIAGLVEFLRVDSACRFSTLVDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
             VD+  R+ RFDVVYH LS   N+R+R++ AV E   VPSIV ++P A+WFEREV+DM+
Sbjct: 61  TAVDYPERTKRFDVVYHLLSMYQNQRIRLRAAVREEDMVPSIVDVHPSANWFEREVFDMF 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRR+LTDYGF GHPLRKDFP TG+ E+ YD+  K+VVY PV+L+QE+R +D
Sbjct: 121 GILFTGHPDLRRLLTDYGFRGHPLRKDFPTTGYTEVRYDEAQKRVVYEPVKLVQEYRQFD 180

Query: 181 FLSPWEGVNSLFAKEDSK 198
           F+SPWEG   +   ++ +
Sbjct: 181 FMSPWEGAEYILPGDEKE 198


>gi|260462232|ref|ZP_05810476.1| NADH (or F420H2) dehydrogenase, subunit C [Mesorhizobium
           opportunistum WSM2075]
 gi|259032092|gb|EEW33359.1| NADH (or F420H2) dehydrogenase, subunit C [Mesorhizobium
           opportunistum WSM2075]
          Length = 200

 Score =  262 bits (670), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 110/199 (55%), Positives = 145/199 (72%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + +L  Y+     G    AV + GEL++ V+  +LV + +FLRDD  C F++IID+
Sbjct: 1   MAASLSELSTYLGEKLPGRFSDAVLAYGELTVHVEPQNLVEVVTFLRDDARCQFISIIDV 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
           CG D+ SR+ RFDVVYH LSP+ N R+RVK+   E   VPSI G++PGADWFERE +D+Y
Sbjct: 61  CGADYPSRAKRFDVVYHLLSPRQNVRIRVKVQADEETMVPSITGVFPGADWFERETYDLY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           G+ F GHPDLRR+LTDYGFEGHPLRKDFP+TGFVE+ YDD+ K+V+Y PVEL QE R++D
Sbjct: 121 GVLFSGHPDLRRLLTDYGFEGHPLRKDFPLTGFVEVRYDDEAKRVIYEPVELKQEFRNFD 180

Query: 181 FLSPWEGVNSLFAKEDSKD 199
           FLSPWEG + +   ++   
Sbjct: 181 FLSPWEGTDYVLPGDEKAK 199


>gi|84516741|ref|ZP_01004099.1| NADH dehydrogenase subunit C [Loktanella vestfoldensis SKA53]
 gi|84509209|gb|EAQ05668.1| NADH dehydrogenase subunit C [Loktanella vestfoldensis SKA53]
          Length = 203

 Score =  262 bits (670), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 96/199 (48%), Positives = 138/199 (69%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   +++LG ++       V+    + GEL++ V    LVS   FL+ D +C F +++D+
Sbjct: 1   MTEALQELGAHLDLKRIDCVQSWDVTHGELTVTVAPSSLVSFVEFLKTDANCLFTSLVDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
             VD+ SR+ RFD++YHFLS   N+R+RV++ + +   +PSI+G++P A+WFEREV+DM+
Sbjct: 61  TAVDYPSRAKRFDMIYHFLSMYQNQRIRVRVQIRDDDMMPSIIGVHPSANWFEREVFDMF 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGF GHPLRKDFP TG+ E+ YD+  K+VVY PV L+QE+R +D
Sbjct: 121 GILFTGHPDLRRILTDYGFRGHPLRKDFPTTGYTEVRYDEVQKRVVYEPVSLVQEYRQFD 180

Query: 181 FLSPWEGVNSLFAKEDSKD 199
           F+SPWEG   +   +D   
Sbjct: 181 FMSPWEGAKYVLPGDDKAK 199


>gi|254469529|ref|ZP_05082934.1| NADH-ubiquinone oxidoreductase chain c protein [Pseudovibrio sp.
           JE062]
 gi|211961364|gb|EEA96559.1| NADH-ubiquinone oxidoreductase chain c protein [Pseudovibrio sp.
           JE062]
          Length = 200

 Score =  262 bits (670), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 100/200 (50%), Positives = 140/200 (70%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + +LG++I  +    V     + G+L+L+V    ++++  FLRDD  C F+ ++D+
Sbjct: 1   MDETLSELGEFIELTLGDKVESWSVAYGDLTLNVSHDQIINVLRFLRDDARCGFIALVDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
           CGVD+ +R  RFDVVYH LSP  N R+RVK+   E   VPS++ I+ GA+WFERE +DMY
Sbjct: 61  CGVDWPAREKRFDVVYHLLSPVQNLRIRVKVQTDETTPVPSVISIFKGAEWFEREAYDMY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F G+PDLRR+LTDYGF+G PLRKDFP+TG+VE+ YDD  K+VVY PV+L QE R +D
Sbjct: 121 GILFTGNPDLRRLLTDYGFDGFPLRKDFPLTGYVEVRYDDTKKRVVYEPVQLTQEFRSFD 180

Query: 181 FLSPWEGVNSLFAKEDSKDD 200
           FLSPWEG + +   ++   +
Sbjct: 181 FLSPWEGTDYVLPGDEKASN 200


>gi|294677056|ref|YP_003577671.1| NADH-quinone oxidoreductase subunit C [Rhodobacter capsulatus SB
           1003]
 gi|6647659|sp|O84971|NUOC_RHOCA RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|3282561|gb|AAC24987.1| NUOC [Rhodobacter capsulatus]
 gi|294475876|gb|ADE85264.1| NADH-quinone oxidoreductase, C subunit [Rhodobacter capsulatus SB
           1003]
          Length = 199

 Score =  262 bits (669), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 101/198 (51%), Positives = 134/198 (67%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  K++DL  ++     G V  A    GEL++ V    +     FLRDD  C F  ++DL
Sbjct: 1   MSEKLQDLAAHVAQQRPGDVISAEVVQGELTVTVKPEGIADFVRFLRDDAGCRFTTLVDL 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
             VD+  R  RF++V+HFLS   N+R+RVK  +AE    PSIV +YP A+W+EREV+DM+
Sbjct: 61  TAVDWPERVERFEMVWHFLSMWKNQRIRVKAGLAEDAMCPSIVEVYPAANWYEREVFDMF 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRR+LTDYGF GHPLRKDFP TG++EL YD+  K+VVY PV+L QE+R +D
Sbjct: 121 GILFSGHPDLRRLLTDYGFRGHPLRKDFPTTGYIELRYDEVQKRVVYEPVKLAQEYRQFD 180

Query: 181 FLSPWEGVNSLFAKEDSK 198
           FLSPWEG  S+   ++ +
Sbjct: 181 FLSPWEGAQSVLPGDEKR 198


>gi|15965019|ref|NP_385372.1| NADH dehydrogenase subunit C [Sinorhizobium meliloti 1021]
 gi|307301091|ref|ZP_07580860.1| NADH (or F420H2) dehydrogenase, subunit C [Sinorhizobium meliloti
           BL225C]
 gi|7387951|sp|O68854|NUOC1_RHIME RecName: Full=NADH-quinone oxidoreductase subunit C 1; AltName:
           Full=NADH dehydrogenase I subunit C 1; AltName:
           Full=NDH-1 subunit C 1
 gi|15074198|emb|CAC45845.1| NADH dehydrogenase I chain C [Sinorhizobium meliloti 1021]
 gi|306904046|gb|EFN34632.1| NADH (or F420H2) dehydrogenase, subunit C [Sinorhizobium meliloti
           BL225C]
          Length = 201

 Score =  262 bits (669), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 108/198 (54%), Positives = 141/198 (71%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + +L  Y+  +    +  A    GEL++     +L++L +FLRDD  C FV+ ID+
Sbjct: 1   MSEALNELASYLREARGALIADAEVKYGELTVTAKAENLIALLTFLRDDVQCGFVSFIDV 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
           CGVD+  R +RFDVVYH LSP+ N+R+RVK+A  E   VPS   ++PGADWFERE +DMY
Sbjct: 61  CGVDYPQRPDRFDVVYHLLSPRQNQRVRVKVATGENDPVPSATSVFPGADWFEREAYDMY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGFEG+PLRKDFP+TGFVE+ YD++ K+VVY PVEL QE R++D
Sbjct: 121 GILFTGHPDLRRILTDYGFEGYPLRKDFPLTGFVEVRYDNEAKRVVYEPVELKQEFRNFD 180

Query: 181 FLSPWEGVNSLFAKEDSK 198
           FLSPWEG   +   ++  
Sbjct: 181 FLSPWEGTEYVLPGDEKA 198


>gi|254511854|ref|ZP_05123921.1| NADH-quinone oxidoreductase, c subunit [Rhodobacteraceae bacterium
           KLH11]
 gi|221535565|gb|EEE38553.1| NADH-quinone oxidoreductase, c subunit [Rhodobacteraceae bacterium
           KLH11]
          Length = 200

 Score =  262 bits (669), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 99/199 (49%), Positives = 140/199 (70%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   +++LG  +    S  V     + GEL++DV   +LV    FL+ D  C F +++D+
Sbjct: 1   MSEALKELGAQLELKRSDCVLSWDVTHGELNVDVAPSNLVEFVEFLKSDRSCQFSSLVDV 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
            GVD+  R+ RFDVVYHFLS   N+R+R+++++ E   VPSIV ++P A+WFEREV+DM+
Sbjct: 61  TGVDYPERAKRFDVVYHFLSMYQNQRIRLRVSIREDDMVPSIVDVHPSANWFEREVFDMF 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGF G+PLRKDFP TG+ E+ YD+  K+VVY PV L+QE+R +D
Sbjct: 121 GILFSGHPDLRRILTDYGFRGYPLRKDFPTTGYTEVRYDEAQKRVVYEPVSLVQEYRQFD 180

Query: 181 FLSPWEGVNSLFAKEDSKD 199
           F+SPWEG N +   ++ ++
Sbjct: 181 FMSPWEGANYILPGDEKQE 199


>gi|163732065|ref|ZP_02139511.1| NADH dehydrogenase subunit C [Roseobacter litoralis Och 149]
 gi|161394363|gb|EDQ18686.1| NADH dehydrogenase subunit C [Roseobacter litoralis Och 149]
          Length = 201

 Score =  261 bits (668), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 93/199 (46%), Positives = 140/199 (70%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   +++LG+YI    +  V     + GEL++DV   ++V L  FL+ D  C F +++D+
Sbjct: 1   MSEPLQELGNYIATKRTDCVLAWDVTHGELNVDVTPSNIVGLVEFLKTDATCRFSSLVDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
             VD+  R+ R+DVVYH LS   N R+R+++++ + + +PS++ ++P A+WFEREV+DM+
Sbjct: 61  TAVDYTGRAKRYDVVYHLLSMYQNHRVRLRVSIRDDQMMPSVISVHPSANWFEREVFDMF 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGF GHPLRKDFP TG+ E+ YD+  K+VVY PV L+QE+R +D
Sbjct: 121 GILFSGHPDLRRILTDYGFRGHPLRKDFPTTGYTEVRYDEAQKRVVYEPVSLVQEYRQFD 180

Query: 181 FLSPWEGVNSLFAKEDSKD 199
           F+SPWEG   +   ++ ++
Sbjct: 181 FMSPWEGAEYILPGDEKQE 199


>gi|307317825|ref|ZP_07597263.1| NADH (or F420H2) dehydrogenase, subunit C [Sinorhizobium meliloti
           AK83]
 gi|5650736|emb|CAB51622.1| nuoC1 [Sinorhizobium meliloti]
 gi|306896587|gb|EFN27335.1| NADH (or F420H2) dehydrogenase, subunit C [Sinorhizobium meliloti
           AK83]
          Length = 201

 Score =  261 bits (668), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 108/198 (54%), Positives = 142/198 (71%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + +L  Y+  +    +  A    GEL++     +L++L +FLRDD  C FV+ ID+
Sbjct: 1   MSEALNELASYLREARGALIADAEVKYGELTVTAKAENLIALLTFLRDDVQCGFVSFIDV 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
           CGVD+  R +RFDVVYH LSP+ N+R+RVK+A  E + VPS   ++PGADWFERE +DMY
Sbjct: 61  CGVDYPQRPDRFDVVYHLLSPRQNQRVRVKVATGENEPVPSATSVFPGADWFEREAYDMY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGFEG+PLRKDFP+TGFVE+ YD++ K+VVY PVEL QE R++D
Sbjct: 121 GILFTGHPDLRRILTDYGFEGYPLRKDFPLTGFVEVRYDNEAKRVVYEPVELKQEFRNFD 180

Query: 181 FLSPWEGVNSLFAKEDSK 198
           FLSPWEG   +   ++  
Sbjct: 181 FLSPWEGTEYVLPGDEKA 198


>gi|319782983|ref|YP_004142459.1| NADH (or F420H2) dehydrogenase subunit C [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317168871|gb|ADV12409.1| NADH (or F420H2) dehydrogenase, subunit C [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 200

 Score =  261 bits (668), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 113/199 (56%), Positives = 145/199 (72%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + +L  Y+     G V  A  + GEL++ V+  DLV + +FLRDD  C F++IID+
Sbjct: 1   MTASLSELSTYLGEKLIGRVNEADIAYGELTIHVEPRDLVEVMTFLRDDARCQFISIIDV 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
           CG D+ SR+ RFDVVYH LSPK N R+RVK+   E   VPSI G+YPGADWFERE +D+Y
Sbjct: 61  CGADYPSRAKRFDVVYHLLSPKQNVRVRVKVQADEETMVPSITGVYPGADWFERETYDLY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           G+ F GHPDLRR+LTDYGFEGHPLRKDFP+TGFVE+ YDD+ K+V+Y PVEL QE R++D
Sbjct: 121 GVLFSGHPDLRRLLTDYGFEGHPLRKDFPLTGFVEVRYDDEAKRVIYEPVELKQEFRNFD 180

Query: 181 FLSPWEGVNSLFAKEDSKD 199
           FLSPWEG + +   ++   
Sbjct: 181 FLSPWEGTDYVLPGDEKAK 199


>gi|209548864|ref|YP_002280781.1| NADH dehydrogenase subunit C [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|226737322|sp|B5ZYL4|NUOC_RHILW RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|209534620|gb|ACI54555.1| NADH (or F420H2) dehydrogenase, subunit C [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 200

 Score =  261 bits (668), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 111/199 (55%), Positives = 139/199 (69%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + +L  Y+  +    +  +    GEL+L     +L++L +FLRDD  C FVN+ID+
Sbjct: 1   MSEALTELASYLGEARGNLIAASQMKYGELTLTTTGENLIALLTFLRDDAKCGFVNLIDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
           CGVD+  R  RFDVVYH LSPK N R+RVK+A  E   VPS   ++PGADWFERE WDMY
Sbjct: 61  CGVDWPQRELRFDVVYHLLSPKQNVRIRVKVATDEDTPVPSACAVHPGADWFERETWDMY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           G+ F GHPDLRRILTDYGFEGHPLRKDFP TGFVE+ YDD  K+VVY PVEL QE R++D
Sbjct: 121 GVLFTGHPDLRRILTDYGFEGHPLRKDFPTTGFVEVRYDDAAKRVVYEPVELKQEFRNFD 180

Query: 181 FLSPWEGVNSLFAKEDSKD 199
           F+SPWEG + +   ++   
Sbjct: 181 FMSPWEGTDYVLPGDEKAK 199


>gi|254461949|ref|ZP_05075365.1| NADH-quinone oxidoreductase, c subunit [Rhodobacterales bacterium
           HTCC2083]
 gi|206678538|gb|EDZ43025.1| NADH-quinone oxidoreductase, c subunit [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 202

 Score =  261 bits (667), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 96/201 (47%), Positives = 136/201 (67%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + +LG +I       V       GEL++ V   ++V L  FL+ DP+C F +++D+
Sbjct: 1   MSAALIELGTHIEAKRPDCVLAWAIEQGELNVTVAPSNIVGLVDFLKTDPNCKFSSLVDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
             VD+  R  RFDVVYHFLS   N R+R+++ V E   VPSIV ++P A+WFERE++DM+
Sbjct: 61  TAVDYPERGKRFDVVYHFLSMYLNHRIRLRLQVREDDMVPSIVEVHPSANWFEREIYDMF 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           G+ F GHPDLRRILTDYGF G+PLRKDFP TG+ E+ YD+  K+VVY PV L+QE+R +D
Sbjct: 121 GLLFSGHPDLRRILTDYGFRGYPLRKDFPTTGYTEVRYDEVEKRVVYEPVSLVQEYRQFD 180

Query: 181 FLSPWEGVNSLFAKEDSKDDM 201
           F+SPWEG   +   ++ +++ 
Sbjct: 181 FMSPWEGAKYVLPGDEKQEEA 201


>gi|153009750|ref|YP_001370965.1| NADH dehydrogenase subunit C [Ochrobactrum anthropi ATCC 49188]
 gi|218534315|sp|A6X1N2|NUOC_OCHA4 RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|151561638|gb|ABS15136.1| NADH (or F420H2) dehydrogenase, subunit C [Ochrobactrum anthropi
           ATCC 49188]
          Length = 202

 Score =  261 bits (667), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 104/200 (52%), Positives = 141/200 (70%), Gaps = 1/200 (0%)

Query: 1   MVR-KIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIID 59
           M    + +L  YI      ++  A  + GEL+L V    ++S+ +FLRDD  C FVN+ D
Sbjct: 1   MSEEALGELSGYIKERLGDAIEEAKLAYGELTLSVPAASIISVLTFLRDDVQCQFVNLTD 60

Query: 60  LCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDM 119
           + GVD+  R+ RFDVVY  +SP+ N+R+RVK+   E   VPS V ++ GA+WFERE +DM
Sbjct: 61  ISGVDYPQRAKRFDVVYQLMSPRQNQRIRVKVQADEDTLVPSAVPVFVGAEWFERETYDM 120

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDY 179
           YG+ F GHPDLRRILTDYGFEGHPLRKDFP+TGFVE+ Y+D++K+VVY PV+L QE R++
Sbjct: 121 YGVLFSGHPDLRRILTDYGFEGHPLRKDFPLTGFVEVRYNDELKRVVYEPVQLRQEFRNF 180

Query: 180 DFLSPWEGVNSLFAKEDSKD 199
           DFLSPWEG + +   ++   
Sbjct: 181 DFLSPWEGTDYVLPGDEKAK 200


>gi|254475901|ref|ZP_05089287.1| NADH-quinone oxidoreductase, c subunit [Ruegeria sp. R11]
 gi|214030144|gb|EEB70979.1| NADH-quinone oxidoreductase, c subunit [Ruegeria sp. R11]
          Length = 201

 Score =  261 bits (667), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 95/198 (47%), Positives = 137/198 (69%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   +++LG  I       V     +  EL++DV   ++     FL++DP C F +++D+
Sbjct: 1   MTEALKELGAQIEAKRPDCVIGWDVTFDELNVDVAPANIAGFVEFLKNDPTCKFSSLVDV 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
             VD+  R+ RFDVVYHFLS   N+R+R+++++ E + VPSIV ++P A+WFEREV+DM+
Sbjct: 61  TAVDYPERAKRFDVVYHFLSMYQNQRIRLRVSIREDEMVPSIVDVHPSANWFEREVFDMF 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGF G+PLRKDFP TG+ E+ YD+  K+VVY PV L+QE+R +D
Sbjct: 121 GILFTGHPDLRRILTDYGFRGYPLRKDFPTTGYTEVRYDEAQKRVVYEPVSLVQEYRQFD 180

Query: 181 FLSPWEGVNSLFAKEDSK 198
           F+SPWEG   +   ++ +
Sbjct: 181 FMSPWEGAEYILPGDEKE 198


>gi|163746198|ref|ZP_02153557.1| NADH dehydrogenase subunit C [Oceanibulbus indolifex HEL-45]
 gi|161380943|gb|EDQ05353.1| NADH dehydrogenase subunit C [Oceanibulbus indolifex HEL-45]
          Length = 209

 Score =  261 bits (666), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 101/198 (51%), Positives = 133/198 (67%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  ++++LG YI       V     + GEL++DV   ++  L  FL+ DP C F  ++D+
Sbjct: 1   MSEQLQELGAYIEAKRPDCVLGWDVTRGELNMDVALANIAGLVEFLKGDPTCRFSTLVDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
             VD+  R+ RFDVVYHFLS   N R+R++    E   VPSI G++P ADWFEREV+DM+
Sbjct: 61  TAVDYPGRAKRFDVVYHFLSMYQNHRIRLRATAREKDMVPSITGVHPSADWFEREVFDMF 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGF GHPLRKDFP TG+ E+ YD+  K+VVY PV L+QE+R +D
Sbjct: 121 GILFSGHPDLRRILTDYGFRGHPLRKDFPTTGYTEVRYDEAAKRVVYEPVSLVQEYRQFD 180

Query: 181 FLSPWEGVNSLFAKEDSK 198
           F+SPWEG   +   +D  
Sbjct: 181 FMSPWEGAEYILPGDDKS 198


>gi|116251468|ref|YP_767306.1| NADH dehydrogenase subunit C [Rhizobium leguminosarum bv. viciae
           3841]
 gi|241204088|ref|YP_002975184.1| NADH dehydrogenase subunit C [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|218534325|sp|Q1MIL3|NUOC_RHIL3 RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|115256116|emb|CAK07197.1| putative NADH-quinone oxidoreductase subunit C [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|240857978|gb|ACS55645.1| NADH (or F420H2) dehydrogenase, subunit C [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 200

 Score =  261 bits (666), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 113/199 (56%), Positives = 138/199 (69%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + +L  Y+  +    +  +    GEL+L     +LV+L +FLRDD  C FVN+ID+
Sbjct: 1   MSEALTELASYLGEARGNLIAASQMKYGELTLTTTGENLVALLTFLRDDAKCGFVNLIDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
           CGVD+  R  RFDVVYH LSPK N R+RVK+A  E   VPS   +YPGADWFERE WDMY
Sbjct: 61  CGVDWPQRELRFDVVYHLLSPKKNLRIRVKVATDEDTPVPSACPVYPGADWFERETWDMY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           G+ F GHPDLRRILTDYGFEGHPLRKDFP TGFVE+ YDD  K+VVY PVEL QE R++D
Sbjct: 121 GVLFTGHPDLRRILTDYGFEGHPLRKDFPTTGFVEVRYDDAAKRVVYEPVELKQEFRNFD 180

Query: 181 FLSPWEGVNSLFAKEDSKD 199
           F+SPWEG   +   ++   
Sbjct: 181 FMSPWEGTEYVLPGDEKAK 199


>gi|227821619|ref|YP_002825589.1| NADH dehydrogenase subunit C [Sinorhizobium fredii NGR234]
 gi|227340618|gb|ACP24836.1| NADH-quinone oxidoreductase chain C 1 [Sinorhizobium fredii NGR234]
          Length = 200

 Score =  261 bits (666), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 112/199 (56%), Positives = 142/199 (71%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + +L  Y+  +    +  A    GEL+L     +L+ L +FLRDD  C F++ ID+
Sbjct: 1   MSEALNELATYLREARGSLIADAAIKYGELTLTATAENLIELLTFLRDDARCGFISFIDV 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
           CGVD+  R +RFDVVYH LSP+ N R+RVK+A A+G  VPS   +YPGADWFERE +DMY
Sbjct: 61  CGVDYPQRPDRFDVVYHLLSPRQNLRVRVKVATADGDPVPSATPVYPGADWFEREAYDMY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGFEG+PLRKDFP+TGFVE+ YDD+VK+VVY PVEL QE R++D
Sbjct: 121 GILFTGHPDLRRILTDYGFEGYPLRKDFPMTGFVEVRYDDEVKRVVYEPVELRQEFRNFD 180

Query: 181 FLSPWEGVNSLFAKEDSKD 199
           FLSPWEG   +   ++   
Sbjct: 181 FLSPWEGTEYVLPGDEKAK 199


>gi|85703211|ref|ZP_01034315.1| NADH-quinone oxidoreductase, C subunit [Roseovarius sp. 217]
 gi|85672139|gb|EAQ26996.1| NADH-quinone oxidoreductase, C subunit [Roseovarius sp. 217]
          Length = 200

 Score =  260 bits (665), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 99/197 (50%), Positives = 133/197 (67%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   +++LG YI       V     + GEL++DV    +  L  FL+ D +C F +++D+
Sbjct: 1   MSATLKELGGYIEAKRVDCVLGWEVAHGELTVDVAINHIAGLAEFLKTDQNCAFSSLVDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
             VD+  R+ RFDVVYHFLS   N R+R+++AV E   VPSI   YP A+WFERE++DM+
Sbjct: 61  TAVDYPERAKRFDVVYHFLSMYQNHRIRLRVAVREEDMVPSITEPYPAANWFEREIFDMF 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGF GHPLRKDFP TG+ E+ YD+  K+VVY PV L+QE+R +D
Sbjct: 121 GILFSGHPDLRRILTDYGFRGHPLRKDFPTTGYTEVRYDEVQKRVVYEPVSLVQEYRQFD 180

Query: 181 FLSPWEGVNSLFAKEDS 197
           F+SPWEG   +   ++ 
Sbjct: 181 FMSPWEGAEYILPGDEK 197


>gi|190891287|ref|YP_001977829.1| NADH-ubiquinone oxidoreductase, chain C [Rhizobium etli CIAT 652]
 gi|218528026|sp|B3PVZ9|NUOC1_RHIE6 RecName: Full=NADH-quinone oxidoreductase subunit C 1; AltName:
           Full=NADH dehydrogenase I subunit C 1; AltName:
           Full=NDH-1 subunit C 1
 gi|190696566|gb|ACE90651.1| NADH-ubiquinone oxidoreductase protein, chain C [Rhizobium etli
           CIAT 652]
          Length = 200

 Score =  260 bits (665), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 113/199 (56%), Positives = 138/199 (69%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + +L  Y+  +    +  +    GEL+L     +L+ L +FLRDD  C FVN+ID+
Sbjct: 1   MSEALTELASYLGEARGNLIAASQLKYGELTLTATGENLIPLLTFLRDDAKCGFVNLIDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
           CGVD+  R  RFDVVYH LSPK N R+RVK+A  E   VPS  G+YPGADWFERE WDMY
Sbjct: 61  CGVDWPQRELRFDVVYHLLSPKKNLRIRVKVATDEDTPVPSACGLYPGADWFERETWDMY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           G+ F GHPDLRRILTDYGFEGHPLRKDFP TGFVE+ YDD  K+VVY PVEL QE R++D
Sbjct: 121 GVLFTGHPDLRRILTDYGFEGHPLRKDFPTTGFVEVRYDDAAKRVVYEPVELKQEFRNFD 180

Query: 181 FLSPWEGVNSLFAKEDSKD 199
           F+SPWEG   +   ++   
Sbjct: 181 FMSPWEGTEYVLPGDEKAK 199


>gi|3025803|gb|AAC12756.1| NADH-ubiquinone oxidoreductase subunit NuoC [Sinorhizobium
           meliloti]
          Length = 201

 Score =  260 bits (664), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 108/198 (54%), Positives = 140/198 (70%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + +L  Y+       +  A    GEL++     +L++L +FLRDD  C FV+ ID+
Sbjct: 1   MSEALNELASYLREGRGALIADAEVKYGELTVTAKAENLIALLTFLRDDVQCGFVSFIDV 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
           CGVD+  R +RFDVVYH LSP+ N+R+RVK+A  E   VPS   ++PGADWFERE +DMY
Sbjct: 61  CGVDYPQRPDRFDVVYHLLSPRQNQRVRVKVATRENDPVPSATSVFPGADWFEREAYDMY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGFEG+PLRKDFP+TGFVE+ YD++ K+VVY PVEL QE R++D
Sbjct: 121 GILFTGHPDLRRILTDYGFEGYPLRKDFPLTGFVEVRYDNEAKRVVYEPVELKQEFRNFD 180

Query: 181 FLSPWEGVNSLFAKEDSK 198
           FLSPWEG   +   ++  
Sbjct: 181 FLSPWEGTEYVLPGDEKA 198


>gi|149914579|ref|ZP_01903109.1| NADH dehydrogenase subunit C [Roseobacter sp. AzwK-3b]
 gi|149811372|gb|EDM71207.1| NADH dehydrogenase subunit C [Roseobacter sp. AzwK-3b]
          Length = 202

 Score =  259 bits (663), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 101/200 (50%), Positives = 135/200 (67%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   +++LG YI       V     S GEL++DV   ++ +L  FL+ D  C F +++D+
Sbjct: 1   MSNALKELGAYIEVKRPDCVLGWDVSHGELNVDVALPNIAALVEFLKTDQTCRFSSLVDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
             VD+  R+ RFDVVYHFLS   N R+R++ A  E   VPSI  I+P A+WFEREV+DM+
Sbjct: 61  TAVDYPDRAKRFDVVYHFLSMYQNHRIRLRAAAREEDMVPSITEIHPSANWFEREVFDMF 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGF GHPLRKDFP TG+ E+ YD+  K+VVY PV L+QE+R +D
Sbjct: 121 GILFSGHPDLRRILTDYGFRGHPLRKDFPTTGYTEVRYDEVQKRVVYEPVSLVQEYRQFD 180

Query: 181 FLSPWEGVNSLFAKEDSKDD 200
           F+SPWEG   +   ++ K +
Sbjct: 181 FMSPWEGAEYILPGDEKKAE 200


>gi|218660526|ref|ZP_03516456.1| NADH dehydrogenase subunit C [Rhizobium etli IE4771]
          Length = 200

 Score =  259 bits (663), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 111/199 (55%), Positives = 137/199 (68%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + +L  Y+  +    +  +    GEL+L     +L+ L +FLRDD  C FVN+ID+
Sbjct: 1   MSEALTELASYLGEARGNLIAASQMKYGELTLTATGENLIPLLTFLRDDAKCGFVNLIDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
           CGVD+  R  RFDVVYH LSPK N R+RVK+A  E   +PS   +YPGADWFERE WDMY
Sbjct: 61  CGVDWPQRELRFDVVYHLLSPKQNLRIRVKVATDEDTPIPSACAVYPGADWFERETWDMY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           G+ F GHPDLRRILTDYGFEGHPLRKDFP TGFVE+ YDD  K+VVY PVEL QE R++D
Sbjct: 121 GVLFTGHPDLRRILTDYGFEGHPLRKDFPTTGFVEVRYDDAAKRVVYEPVELKQEFRNFD 180

Query: 181 FLSPWEGVNSLFAKEDSKD 199
           F+SPWEG   +   ++   
Sbjct: 181 FMSPWEGTEYVLPGDEKAK 199


>gi|260427526|ref|ZP_05781505.1| NADH-quinone oxidoreductase subunit c [Citreicella sp. SE45]
 gi|260422018|gb|EEX15269.1| NADH-quinone oxidoreductase subunit c [Citreicella sp. SE45]
          Length = 202

 Score =  259 bits (663), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 98/199 (49%), Positives = 139/199 (69%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M + + +LG ++       V     ++GEL++DV   ++     FL+ DP C F  ++D+
Sbjct: 1   MTQAMSELGGHLELKRPDCVLGWNVALGELNVDVASSNIAGFVEFLKTDPSCRFSTLVDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
             VD+  R+ RFDVVYHFLS   N R+RV++AV E + VPSI G++  A+WFEREV+DM+
Sbjct: 61  TAVDYPERAKRFDVVYHFLSMYQNHRIRVRVAVREDEVVPSITGVHVSANWFEREVFDMF 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRR+LTDYGF GHPLRKDFP TG+VE+ YD+++K+VVY PV L+QE+R +D
Sbjct: 121 GIIFSGHPDLRRLLTDYGFRGHPLRKDFPTTGYVEVRYDEELKRVVYEPVSLVQEYRQFD 180

Query: 181 FLSPWEGVNSLFAKEDSKD 199
           F+SPWEG   +   ++  +
Sbjct: 181 FMSPWEGAQYVLPGDEKAE 199


>gi|163738799|ref|ZP_02146213.1| NADH dehydrogenase subunit C [Phaeobacter gallaeciensis BS107]
 gi|161388127|gb|EDQ12482.1| NADH dehydrogenase subunit C [Phaeobacter gallaeciensis BS107]
          Length = 201

 Score =  259 bits (663), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 97/198 (48%), Positives = 134/198 (67%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + +LG  I       V     S  EL++DV   +L     FL+ D  C F +++D+
Sbjct: 1   MTEALNELGTQIAAKRPDCVIGWDVSFDELNVDVAPSNLAGFVEFLKADATCKFSSLVDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
             VD+  R  RFDVVYHFLS   N+R+R+++++ E + +PSIVGI+P A+WFEREV+DM+
Sbjct: 61  TAVDYPDRPKRFDVVYHFLSMYQNQRIRLRVSIREDEMLPSIVGIHPSANWFEREVFDMF 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGF G+PLRKDFP TG+ E+ YD+  K+VVY PV L+QE+R +D
Sbjct: 121 GILFTGHPDLRRILTDYGFRGYPLRKDFPTTGYTEVRYDEAQKRVVYEPVSLVQEYRQFD 180

Query: 181 FLSPWEGVNSLFAKEDSK 198
           F+SPWEG   +   ++ +
Sbjct: 181 FMSPWEGAEYILPGDEKE 198


>gi|126729551|ref|ZP_01745364.1| NADH dehydrogenase subunit C [Sagittula stellata E-37]
 gi|126709670|gb|EBA08723.1| NADH dehydrogenase subunit C [Sagittula stellata E-37]
          Length = 202

 Score =  259 bits (663), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 100/199 (50%), Positives = 139/199 (69%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           MV+ +++LGD+I       V     + GEL++DV   ++     FL+ DP C F  ++D+
Sbjct: 1   MVQALKELGDHIATKRPDCVVAWDVTHGELNVDVAPSNIRGFVDFLKTDPTCRFSTLVDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
            GVD+  R  RFDVVYHFLS   N R+R++++V E + VPSIV ++P A+WFERE +DMY
Sbjct: 61  TGVDYPERPKRFDVVYHFLSMYQNHRIRLRVSVREDEMVPSIVPVHPSANWFERETFDMY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGF G+PLRKDFP TG+ E+ YD++ K+VVY PV L+QE+R +D
Sbjct: 121 GILFSGHPDLRRILTDYGFRGYPLRKDFPTTGYTEVRYDEERKRVVYEPVTLVQEYRQFD 180

Query: 181 FLSPWEGVNSLFAKEDSKD 199
           F+SPWEG   +   ++  +
Sbjct: 181 FMSPWEGAKYVLPGDEKTE 199


>gi|118590037|ref|ZP_01547441.1| NADH dehydrogenase subunit C [Stappia aggregata IAM 12614]
 gi|118437534|gb|EAV44171.1| NADH dehydrogenase subunit C [Stappia aggregata IAM 12614]
          Length = 201

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 110/198 (55%), Positives = 140/198 (70%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   +++L ++I      S+       GEL+L VD  D++    FLRD+  C FVN+ D+
Sbjct: 1   MDETLKELAEHIELGLGESLVSWKVEYGELTLTVDATDILDAIRFLRDNSSCKFVNLTDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
           CGVD+ SR  RFDVVYHFLSP  N+R+RVK+A  E   V S+  ++PGA+WFERE +DMY
Sbjct: 61  CGVDYPSREKRFDVVYHFLSPVQNQRIRVKVATDENTPVASLTPLFPGAEWFEREAYDMY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGF+GHPLRKDFPVTGFVE+ YDD+ K+VVY PV L QE R +D
Sbjct: 121 GILFSGHPDLRRILTDYGFDGHPLRKDFPVTGFVEVRYDDEKKRVVYEPVRLNQEMRSFD 180

Query: 181 FLSPWEGVNSLFAKEDSK 198
           FLSPWEG + +   ++  
Sbjct: 181 FLSPWEGTDYVLPGDEKA 198


>gi|188580283|ref|YP_001923728.1| NADH (or F420H2) dehydrogenase, subunit C [Methylobacterium populi
           BJ001]
 gi|218534298|sp|B1ZA44|NUOC_METPB RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|179343781|gb|ACB79193.1| NADH (or F420H2) dehydrogenase, subunit C [Methylobacterium populi
           BJ001]
          Length = 219

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 101/196 (51%), Positives = 136/196 (69%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
             +  +G+ I  +   +V     + GEL+L V   D+V   ++LRDDP+C F   ID+CG
Sbjct: 22  DALRAMGERITGALGPAVTDWSIAHGELTLIVQGSDIVYALTYLRDDPNCAFRCFIDICG 81

Query: 63  VDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGI 122
           VD+  R+ RFDVVYH LS ++N R+RVK+       VPS + ++P A+WFERE +D+YGI
Sbjct: 82  VDYPQRARRFDVVYHLLSLRHNMRVRVKVQTDAATPVPSAIPVFPAANWFERETYDLYGI 141

Query: 123 FFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFL 182
            F GHPDLRR+LTDYGFEGHPLRKDFP+TGFVE+ YD    +VVY PV+L QE R++DFL
Sbjct: 142 LFSGHPDLRRLLTDYGFEGHPLRKDFPLTGFVEVRYDQDEARVVYEPVKLTQEFRNFDFL 201

Query: 183 SPWEGVNSLFAKEDSK 198
           SPWEG + +   ++ K
Sbjct: 202 SPWEGTDYVLPGDEKK 217


>gi|86357238|ref|YP_469130.1| NADH dehydrogenase subunit C [Rhizobium etli CFN 42]
 gi|123512313|sp|Q2K9T3|NUOC_RHIEC RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|86281340|gb|ABC90403.1| NADH-ubiquinone oxidoreductase chain C protein [Rhizobium etli CFN
           42]
          Length = 200

 Score =  259 bits (661), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 112/199 (56%), Positives = 138/199 (69%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + +L  Y+  +    +  +    GEL+L     +L++L +FLRDD  C FVN+ID+
Sbjct: 1   MSEALTELASYLGEARGNLIAASQLKYGELTLTATGENLIALLTFLRDDAKCGFVNMIDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
           CGVD+  R  RFDVVYH LSPK N R+RVK+A  E   VPS   +YPGADWFERE WDMY
Sbjct: 61  CGVDWPQRELRFDVVYHLLSPKKNLRIRVKVATDEDTPVPSACAVYPGADWFERETWDMY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           G+ F GHPDLRRILTDYGFEGHPLRKDFP TGFVE+ YDD  K+VVY PVEL QE R++D
Sbjct: 121 GVLFTGHPDLRRILTDYGFEGHPLRKDFPTTGFVEVRYDDAAKRVVYEPVELKQEFRNFD 180

Query: 181 FLSPWEGVNSLFAKEDSKD 199
           F+SPWEG   +   ++   
Sbjct: 181 FMSPWEGTEYVLPGDEKAK 199


>gi|170742513|ref|YP_001771168.1| NADH (or F420H2) dehydrogenase subunit C [Methylobacterium sp.
           4-46]
 gi|218534301|sp|B0ULK6|NUOC_METS4 RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|168196787|gb|ACA18734.1| NADH (or F420H2) dehydrogenase, subunit C [Methylobacterium sp.
           4-46]
          Length = 215

 Score =  259 bits (661), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 99/196 (50%), Positives = 136/196 (69%)

Query: 4   KIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGV 63
            ++ L D +  +  G+V     +  EL+L V+  ++V + + LRDDP C F + ID+CG 
Sbjct: 19  ALQALSDRLAETLGGAVVERAIAFDELTLVVEPSEIVRVLTHLRDDPACGFRSFIDICGA 78

Query: 64  DFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIF 123
           D+  R  RFDVVYH LS ++NRR+RVK+   E   VPS++ ++P A+W+ERE +D+YGI 
Sbjct: 79  DYPGREKRFDVVYHLLSLRHNRRIRVKVQTDEATPVPSVITVFPAANWYERETYDLYGIL 138

Query: 124 FEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLS 183
           F GHPDLRR+LTDYGFEGHPLRKDFP+TGFVE+ YD    +VVY PV+L QE R +DFLS
Sbjct: 139 FSGHPDLRRLLTDYGFEGHPLRKDFPLTGFVEVRYDQDEGRVVYEPVKLSQEFRQFDFLS 198

Query: 184 PWEGVNSLFAKEDSKD 199
           PWEG + +   ++   
Sbjct: 199 PWEGTDYVLPGDEKAK 214


>gi|17987439|ref|NP_540073.1| NADH dehydrogenase subunit C [Brucella melitensis bv. 1 str. 16M]
 gi|23501691|ref|NP_697818.1| NADH dehydrogenase subunit C [Brucella suis 1330]
 gi|148559816|ref|YP_001258782.1| NADH dehydrogenase subunit C [Brucella ovis ATCC 25840]
 gi|161618768|ref|YP_001592655.1| NADH dehydrogenase subunit C [Brucella canis ATCC 23365]
 gi|163843077|ref|YP_001627481.1| NADH dehydrogenase subunit C [Brucella suis ATCC 23445]
 gi|225852320|ref|YP_002732553.1| NADH dehydrogenase subunit C [Brucella melitensis ATCC 23457]
 gi|254693542|ref|ZP_05155370.1| NADH dehydrogenase subunit C [Brucella abortus bv. 3 str. Tulya]
 gi|254701572|ref|ZP_05163400.1| NADH dehydrogenase subunit C [Brucella suis bv. 5 str. 513]
 gi|254704119|ref|ZP_05165947.1| NADH dehydrogenase subunit C [Brucella suis bv. 3 str. 686]
 gi|254706981|ref|ZP_05168809.1| NADH dehydrogenase subunit C [Brucella pinnipedialis M163/99/10]
 gi|254709912|ref|ZP_05171723.1| NADH dehydrogenase subunit C [Brucella pinnipedialis B2/94]
 gi|254713913|ref|ZP_05175724.1| NADH dehydrogenase subunit C [Brucella ceti M644/93/1]
 gi|254717029|ref|ZP_05178840.1| NADH dehydrogenase subunit C [Brucella ceti M13/05/1]
 gi|254718913|ref|ZP_05180724.1| NADH dehydrogenase subunit C [Brucella sp. 83/13]
 gi|256031405|ref|ZP_05445019.1| NADH dehydrogenase subunit C [Brucella pinnipedialis M292/94/1]
 gi|256044483|ref|ZP_05447387.1| NADH dehydrogenase subunit C [Brucella melitensis bv. 1 str. Rev.1]
 gi|256060916|ref|ZP_05451074.1| NADH dehydrogenase subunit C [Brucella neotomae 5K33]
 gi|256113334|ref|ZP_05454196.1| NADH dehydrogenase subunit C [Brucella melitensis bv. 3 str. Ether]
 gi|256264181|ref|ZP_05466713.1| trifunctional NADH dehydrogenase I subunit B/C/D [Brucella
           melitensis bv. 2 str. 63/9]
 gi|256369236|ref|YP_003106744.1| NADH dehydrogenase subunit C [Brucella microti CCM 4915]
 gi|260563837|ref|ZP_05834323.1| trifunctional NADH dehydrogenase I subunit B/C/D [Brucella
           melitensis bv. 1 str. 16M]
 gi|260566632|ref|ZP_05837102.1| trifunctional NADH dehydrogenase I subunit B/C/D [Brucella suis bv.
           4 str. 40]
 gi|261213807|ref|ZP_05928088.1| NADH dehydrogenase subunit C [Brucella abortus bv. 3 str. Tulya]
 gi|261218836|ref|ZP_05933117.1| NADH-quinone oxidoreductase subunit C [Brucella ceti M13/05/1]
 gi|261314444|ref|ZP_05953641.1| NADH-quinone oxidoreductase subunit C [Brucella pinnipedialis
           M163/99/10]
 gi|261317458|ref|ZP_05956655.1| NADH-quinone oxidoreductase subunit C [Brucella pinnipedialis
           B2/94]
 gi|261321665|ref|ZP_05960862.1| NADH-quinone oxidoreductase subunit C [Brucella ceti M644/93/1]
 gi|261324916|ref|ZP_05964113.1| NADH-quinone oxidoreductase subunit C [Brucella neotomae 5K33]
 gi|261752125|ref|ZP_05995834.1| NADH-quinone oxidoreductase subunit C [Brucella suis bv. 5 str.
           513]
 gi|261754785|ref|ZP_05998494.1| NADH-quinone oxidoreductase subunit C [Brucella suis bv. 3 str.
           686]
 gi|265983900|ref|ZP_06096635.1| NADH-quinone oxidoreductase subunit C [Brucella sp. 83/13]
 gi|265988494|ref|ZP_06101051.1| NADH-quinone oxidoreductase subunit C [Brucella pinnipedialis
           M292/94/1]
 gi|265990907|ref|ZP_06103464.1| NADH-quinone oxidoreductase subunit C [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265994744|ref|ZP_06107301.1| NADH-quinone oxidoreductase subunit C [Brucella melitensis bv. 3
           str. Ether]
 gi|294852161|ref|ZP_06792834.1| NADH-quinone oxidoreductase subunit C [Brucella sp. NVSL 07-0026]
 gi|306838239|ref|ZP_07471091.1| NADH dehydrogenase subunit C [Brucella sp. NF 2653]
 gi|306843741|ref|ZP_07476340.1| NADH dehydrogenase subunit C [Brucella sp. BO1]
 gi|81752804|sp|Q8G1B5|NUOC_BRUSU RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|81851725|sp|Q8YGK2|NUOC_BRUME RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|218534260|sp|A9MAI1|NUOC_BRUC2 RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|218534262|sp|A5VPY5|NUOC_BRUO2 RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|218534264|sp|B0CLD1|NUOC_BRUSI RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|254767810|sp|C0RIE1|NUOC_BRUMB RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|17983132|gb|AAL52337.1| NADH-quinone oxidoreductase chain c [Brucella melitensis bv. 1 str.
           16M]
 gi|23347613|gb|AAN29733.1| NADH dehydrogenase I, C subunit [Brucella suis 1330]
 gi|148371073|gb|ABQ61052.1| NADH dehydrogenase I, C subunit [Brucella ovis ATCC 25840]
 gi|161335579|gb|ABX61884.1| NADH (or F420H2) dehydrogenase, subunit C [Brucella canis ATCC
           23365]
 gi|163673800|gb|ABY37911.1| NADH (or F420H2) dehydrogenase, subunit C [Brucella suis ATCC
           23445]
 gi|225640685|gb|ACO00599.1| NADH dehydrogenase subunit C [Brucella melitensis ATCC 23457]
 gi|255999396|gb|ACU47795.1| NADH dehydrogenase subunit C [Brucella microti CCM 4915]
 gi|260153853|gb|EEW88945.1| trifunctional NADH dehydrogenase I subunit B/C/D [Brucella
           melitensis bv. 1 str. 16M]
 gi|260156150|gb|EEW91230.1| trifunctional NADH dehydrogenase I subunit B/C/D [Brucella suis bv.
           4 str. 40]
 gi|260915414|gb|EEX82275.1| NADH dehydrogenase subunit C [Brucella abortus bv. 3 str. Tulya]
 gi|260923925|gb|EEX90493.1| NADH-quinone oxidoreductase subunit C [Brucella ceti M13/05/1]
 gi|261294355|gb|EEX97851.1| NADH-quinone oxidoreductase subunit C [Brucella ceti M644/93/1]
 gi|261296681|gb|EEY00178.1| NADH-quinone oxidoreductase subunit C [Brucella pinnipedialis
           B2/94]
 gi|261300896|gb|EEY04393.1| NADH-quinone oxidoreductase subunit C [Brucella neotomae 5K33]
 gi|261303470|gb|EEY06967.1| NADH-quinone oxidoreductase subunit C [Brucella pinnipedialis
           M163/99/10]
 gi|261741878|gb|EEY29804.1| NADH-quinone oxidoreductase subunit C [Brucella suis bv. 5 str.
           513]
 gi|261744538|gb|EEY32464.1| NADH-quinone oxidoreductase subunit C [Brucella suis bv. 3 str.
           686]
 gi|262765857|gb|EEZ11646.1| NADH-quinone oxidoreductase subunit C [Brucella melitensis bv. 3
           str. Ether]
 gi|263001691|gb|EEZ14266.1| NADH-quinone oxidoreductase subunit C [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263094399|gb|EEZ18244.1| trifunctional NADH dehydrogenase I subunit B/C/D [Brucella
           melitensis bv. 2 str. 63/9]
 gi|264660691|gb|EEZ30952.1| NADH-quinone oxidoreductase subunit C [Brucella pinnipedialis
           M292/94/1]
 gi|264662492|gb|EEZ32753.1| NADH-quinone oxidoreductase subunit C [Brucella sp. 83/13]
 gi|294820750|gb|EFG37749.1| NADH-quinone oxidoreductase subunit C [Brucella sp. NVSL 07-0026]
 gi|306275932|gb|EFM57645.1| NADH dehydrogenase subunit C [Brucella sp. BO1]
 gi|306406683|gb|EFM62910.1| NADH dehydrogenase subunit C [Brucella sp. NF 2653]
 gi|326408827|gb|ADZ65892.1| NADH dehydrogenase subunit C [Brucella melitensis M28]
 gi|326538543|gb|ADZ86758.1| NADH dehydrogenase subunit C [Brucella melitensis M5-90]
          Length = 202

 Score =  259 bits (661), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 105/200 (52%), Positives = 139/200 (69%), Gaps = 1/200 (0%)

Query: 1   MVR-KIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIID 59
           M    + +L  YI      ++  A  + GEL+L V    L+ + +FLRDD  C FVN+ D
Sbjct: 1   MSEEALGELSGYIRERLGDAIEEANLAYGELTLCVPVASLIGVLTFLRDDVQCQFVNLTD 60

Query: 60  LCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDM 119
           + GVD+  R  RFDVVY  LSP+ N+R+RVK+   E   VPS V ++ GA+W+ERE +DM
Sbjct: 61  ISGVDYPQREKRFDVVYQLLSPRQNQRIRVKVQADEDTLVPSAVPVFFGAEWYEREAYDM 120

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDY 179
           YGI F GHPDLRRILTDYGFEGHPLRKDFP+TGFVE+ Y+D++K+VVY PV+L QE R++
Sbjct: 121 YGILFSGHPDLRRILTDYGFEGHPLRKDFPLTGFVEVRYNDELKRVVYEPVQLRQEFRNF 180

Query: 180 DFLSPWEGVNSLFAKEDSKD 199
           DFLSPWEG + +   ++   
Sbjct: 181 DFLSPWEGTDYVLPGDEKAK 200


>gi|306841958|ref|ZP_07474635.1| NADH dehydrogenase subunit C [Brucella sp. BO2]
 gi|306287949|gb|EFM59360.1| NADH dehydrogenase subunit C [Brucella sp. BO2]
          Length = 202

 Score =  259 bits (661), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 105/200 (52%), Positives = 139/200 (69%), Gaps = 1/200 (0%)

Query: 1   MVR-KIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIID 59
           M    + +L  YI      ++  A  + GEL+L V    L+ + +FLRDD  C FVN+ D
Sbjct: 1   MSEEALGELSGYIRERLGDAIEDANLAYGELTLCVPVASLIGVLTFLRDDVQCQFVNLTD 60

Query: 60  LCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDM 119
           + GVD+  R  RFDVVY  LSP+ N+R+RVK+   E   VPS V ++ GA+W+ERE +DM
Sbjct: 61  ISGVDYPQREKRFDVVYQLLSPRQNQRIRVKVQADEDTLVPSAVPVFFGAEWYEREAYDM 120

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDY 179
           YGI F GHPDLRRILTDYGFEGHPLRKDFP+TGFVE+ Y+D++K+VVY PV+L QE R++
Sbjct: 121 YGILFSGHPDLRRILTDYGFEGHPLRKDFPLTGFVEVRYNDELKRVVYEPVQLRQEFRNF 180

Query: 180 DFLSPWEGVNSLFAKEDSKD 199
           DFLSPWEG + +   ++   
Sbjct: 181 DFLSPWEGTDYVLPGDEKAK 200


>gi|13471405|ref|NP_102971.1| NADH dehydrogenase subunit C [Mesorhizobium loti MAFF303099]
 gi|81855685|sp|Q98KQ7|NUOC_RHILO RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|14022147|dbj|BAB48757.1| NADH-ubiquinone dehydrogenase chain C 1 [Mesorhizobium loti
           MAFF303099]
          Length = 201

 Score =  259 bits (661), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 109/199 (54%), Positives = 144/199 (72%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + +L  Y+     G V  A  + GEL++ V+  +L+ + +FLRDD  C F++IID+
Sbjct: 1   MAASLSELSTYLGERLIGRVNDADIAYGELTMHVEPRNLIEVVTFLRDDQRCQFISIIDV 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
           CG D+ SR  RFDVVYH LSPK N R+R+K+   E   VPSI G++PGADWFERE +D+Y
Sbjct: 61  CGADYPSRPKRFDVVYHLLSPKQNVRIRLKVQADEETMVPSITGVFPGADWFERETYDLY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           G+ F GHPDLRR+LTDYGFEGHPLRKDFP+TGFVE+ YDD+ K+V+Y PVEL QE R++D
Sbjct: 121 GVLFSGHPDLRRLLTDYGFEGHPLRKDFPLTGFVEVRYDDEAKRVIYEPVELKQEFRNFD 180

Query: 181 FLSPWEGVNSLFAKEDSKD 199
           FLSPWEG + +   ++   
Sbjct: 181 FLSPWEGTDYVLPGDEKAK 199


>gi|110680470|ref|YP_683477.1| NADH dehydrogenase subunit C [Roseobacter denitrificans OCh 114]
 gi|122972618|sp|Q163Q2|NUOC_ROSDO RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|109456586|gb|ABG32791.1| NADH-quinone oxidoreductase chain C [Roseobacter denitrificans OCh
           114]
          Length = 199

 Score =  258 bits (660), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 96/199 (48%), Positives = 138/199 (69%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   +++LG+YI    +  V     +  EL+LDV   ++V L  FL+ D  C F  +ID+
Sbjct: 1   MSEPLQELGNYIATKRADCVLAWDVTNKELNLDVTPSNIVGLVEFLKTDATCRFSTLIDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
             VD+  R+ R+DVVYH LS   N R+R+++++ E + +PS++ ++P A+WFEREV+DM+
Sbjct: 61  TAVDYTGRAKRYDVVYHLLSMYQNHRVRLRVSIREDQMMPSVISVHPSANWFEREVFDMF 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGF GHPLRKDFP TG+ E+ YD+  K+VVY PV L+QE+R +D
Sbjct: 121 GILFSGHPDLRRILTDYGFRGHPLRKDFPTTGYTEVRYDEAQKRVVYEPVSLVQEYRQFD 180

Query: 181 FLSPWEGVNSLFAKEDSKD 199
           F+SPWEG   +   ++ K+
Sbjct: 181 FMSPWEGAEYILPGDEKKE 199


>gi|90423903|ref|YP_532273.1| NADH dehydrogenase subunit C [Rhodopseudomonas palustris BisB18]
 gi|122476334|sp|Q215I2|NUOC_RHOPB RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|90105917|gb|ABD87954.1| NADH (or F420H2) dehydrogenase, subunit C [Rhodopseudomonas
           palustris BisB18]
          Length = 199

 Score =  258 bits (660), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 102/199 (51%), Positives = 141/199 (70%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +  + +LG+ I  +   +V  A  + GEL+L VD   +V +  FLRDDP C F++ ID+ 
Sbjct: 1   MTDLAELGETIKAALPAAVSNASIAFGELTLTVDAAKIVEVVRFLRDDPRCRFISPIDVT 60

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD+  R+NRFDVV+HFLSP  N R+R++   +E   VPS++ ++PG DWFERE +D+YG
Sbjct: 61  AVDYPGRANRFDVVWHFLSPSLNTRIRLRAEASETTQVPSLIDLFPGVDWFEREAYDLYG 120

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           + F GHPD+RRILTDYGF+GHPLRKDFP++GFVE+ YDD  K+VVY PV L QE R +DF
Sbjct: 121 VIFTGHPDMRRILTDYGFDGHPLRKDFPLSGFVEVRYDDDEKRVVYEPVRLNQEFRKFDF 180

Query: 182 LSPWEGVNSLFAKEDSKDD 200
           LSPWEG +     ++ + +
Sbjct: 181 LSPWEGADYPLPGDEKRSE 199


>gi|254453925|ref|ZP_05067362.1| NADH-quinone oxidoreductase, c subunit [Octadecabacter antarcticus
           238]
 gi|198268331|gb|EDY92601.1| NADH-quinone oxidoreductase, c subunit [Octadecabacter antarcticus
           238]
          Length = 215

 Score =  258 bits (659), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 92/199 (46%), Positives = 132/199 (66%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
             + +LG +I       V     + GEL+++V   +L     FL+ D  C F +++D+  
Sbjct: 11  EDLNELGQHIELKRPDCVLSWDVTGGELTVNVAPANLAGFIEFLKVDTACKFSSLVDITA 70

Query: 63  VDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGI 122
           VD+  R  RFDVVYHFLS   N R+R+++ V E + V SI  ++P A+WFEREV+DM+G+
Sbjct: 71  VDYPGRDKRFDVVYHFLSMYQNHRIRLRVKVREDEMVASITDVHPSANWFEREVFDMFGL 130

Query: 123 FFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFL 182
            F+GHPDLRRILTDYGF G+PLRKDFP +G+ E+ YD+  K+VVY P+ L+QE+R +DF+
Sbjct: 131 IFKGHPDLRRILTDYGFRGYPLRKDFPTSGYTEVRYDEVQKRVVYEPISLVQEYRQFDFM 190

Query: 183 SPWEGVNSLFAKEDSKDDM 201
           SPWEG   +   +D  D+ 
Sbjct: 191 SPWEGAQYILPGDDKADEK 209


>gi|149202672|ref|ZP_01879644.1| NADH dehydrogenase subunit C [Roseovarius sp. TM1035]
 gi|149143954|gb|EDM31988.1| NADH dehydrogenase subunit C [Roseovarius sp. TM1035]
          Length = 200

 Score =  258 bits (659), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 99/197 (50%), Positives = 133/197 (67%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   +++LG YI +     V     + GEL++DV    +  L  FL+ D +C F  ++D+
Sbjct: 1   MSATLKELGGYIEHKRGDCVLGWDVAFGELTVDVALNHIDGLAEFLKTDQNCAFSTLVDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
             VD+  R+ RFDVVYHFLS   N R+R+++AV +   VPSI   YP A+WFEREV+DM+
Sbjct: 61  TAVDYPDRAKRFDVVYHFLSMYQNHRIRLRVAVRDEDMVPSITEAYPAANWFEREVFDMF 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGF GHPLRKDFP TG+ E+ YD+  K+VVY PV L+QE+R +D
Sbjct: 121 GILFSGHPDLRRILTDYGFRGHPLRKDFPTTGYTEVRYDEVQKRVVYEPVSLVQEYRQFD 180

Query: 181 FLSPWEGVNSLFAKEDS 197
           F+SPWEG   +   ++ 
Sbjct: 181 FMSPWEGAEYILPGDEK 197


>gi|83311884|ref|YP_422148.1| NADH dehydrogenase subunit C [Magnetospirillum magneticum AMB-1]
 gi|123541538|sp|Q2W3I6|NUOC_MAGMM RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|82946725|dbj|BAE51589.1| NADH:ubiquinone oxidoreductase 27 kD subunit [Magnetospirillum
           magneticum AMB-1]
          Length = 199

 Score =  258 bits (659), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 106/200 (53%), Positives = 142/200 (71%), Gaps = 2/200 (1%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSV-GELSLDVDCGDLVSLCSFLRDDPHCCFVNIID 59
           M + ++DLG+YI  +    V     +  GELSL V    +V + ++L+DD  C F  ++D
Sbjct: 1   MTQALKDLGEYIAQALPQDVLGTEVNRCGELSLTVKAASIVKVMTYLKDDAGCLFKQLVD 60

Query: 60  LCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDM 119
           +CGVD+  R  RFDVVYH LS K+N+R+RVK+A  E  +VPS+ G++  A WFEREVWDM
Sbjct: 61  VCGVDWPGREQRFDVVYHLLSMKHNQRVRVKVATDEETAVPSVTGVFSSAGWFEREVWDM 120

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDY 179
           YG+ F  HPDLRRILTDYGFEGHPLRKDFP+TG+VE+ YDD+ K+VVY PV+L Q+ R +
Sbjct: 121 YGVLFSDHPDLRRILTDYGFEGHPLRKDFPLTGYVEMRYDDETKRVVYEPVKLTQDFRSF 180

Query: 180 DFLSPWEGVNSLFAKEDSKD 199
           DFLSPWEG   +   ++  +
Sbjct: 181 DFLSPWEGPG-MLPGDEKAN 199


>gi|225627301|ref|ZP_03785338.1| NADH dehydrogenase subunit C [Brucella ceti str. Cudo]
 gi|256159526|ref|ZP_05457294.1| NADH dehydrogenase subunit C [Brucella ceti M490/95/1]
 gi|256254813|ref|ZP_05460349.1| NADH dehydrogenase subunit C [Brucella ceti B1/94]
 gi|260168539|ref|ZP_05755350.1| NADH dehydrogenase subunit C [Brucella sp. F5/99]
 gi|261221994|ref|ZP_05936275.1| NADH-quinone oxidoreductase subunit C [Brucella ceti B1/94]
 gi|261758012|ref|ZP_06001721.1| NADH dehydrogenase subunit C [Brucella sp. F5/99]
 gi|265997958|ref|ZP_06110515.1| NADH-quinone oxidoreductase subunit C [Brucella ceti M490/95/1]
 gi|225617306|gb|EEH14351.1| NADH dehydrogenase subunit C [Brucella ceti str. Cudo]
 gi|260920578|gb|EEX87231.1| NADH-quinone oxidoreductase subunit C [Brucella ceti B1/94]
 gi|261737996|gb|EEY25992.1| NADH dehydrogenase subunit C [Brucella sp. F5/99]
 gi|262552426|gb|EEZ08416.1| NADH-quinone oxidoreductase subunit C [Brucella ceti M490/95/1]
          Length = 202

 Score =  258 bits (659), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 104/200 (52%), Positives = 139/200 (69%), Gaps = 1/200 (0%)

Query: 1   MVR-KIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIID 59
           M    + +L  YI      ++  A  + GEL+L V    L+ + +FLRDD  C FVN+ D
Sbjct: 1   MSEEALGELSGYIRERLGDAIEEANLAYGELTLCVPVASLIGVLTFLRDDVQCQFVNLTD 60

Query: 60  LCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDM 119
           + GVD+  R  RFDVVY  LSP+ N+R+RVK+   E   VPS + ++ GA+W+ERE +DM
Sbjct: 61  ISGVDYPQREKRFDVVYQLLSPRQNQRIRVKVQADEDTLVPSAIPVFFGAEWYEREAYDM 120

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDY 179
           YGI F GHPDLRRILTDYGFEGHPLRKDFP+TGFVE+ Y+D++K+VVY PV+L QE R++
Sbjct: 121 YGILFSGHPDLRRILTDYGFEGHPLRKDFPLTGFVEVRYNDELKRVVYEPVQLRQEFRNF 180

Query: 180 DFLSPWEGVNSLFAKEDSKD 199
           DFLSPWEG + +   ++   
Sbjct: 181 DFLSPWEGTDYVLPGDEKAK 200


>gi|56697622|ref|YP_167991.1| NADH dehydrogenase subunit C [Ruegeria pomeroyi DSS-3]
 gi|81676163|sp|Q5LPR5|NUOC_SILPO RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|56679359|gb|AAV96025.1| NADH-quinone oxidoreductase, C subunit [Ruegeria pomeroyi DSS-3]
          Length = 200

 Score =  258 bits (659), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 96/199 (48%), Positives = 137/199 (68%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + +LG ++    +  +     + GEL++DV   +LV    FLR D  C F  ++D+
Sbjct: 1   MSDALRELGTHLELKRADCILSWDVTFGELNVDVAPSNLVDFVDFLRSDSSCRFSTLVDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
             VD+  R+ RFDVVYHFLS   N+R+R+++++ E   VPSI  ++P A+WFEREV+DM+
Sbjct: 61  TAVDYPERAKRFDVVYHFLSMYQNQRIRLRVSIREDDMVPSITDVHPSANWFEREVFDMF 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGF G+PLRKDFP TG+ E+ YD+  K+VVY PV L+QE+R +D
Sbjct: 121 GILFTGHPDLRRILTDYGFRGYPLRKDFPTTGYTEVRYDEAEKRVVYEPVSLVQEYRQFD 180

Query: 181 FLSPWEGVNSLFAKEDSKD 199
           F+SPWEG + +   ++ K+
Sbjct: 181 FMSPWEGADYILPGDEKKE 199


>gi|84502606|ref|ZP_01000725.1| NADH dehydrogenase subunit C [Oceanicola batsensis HTCC2597]
 gi|84389001|gb|EAQ01799.1| NADH dehydrogenase subunit C [Oceanicola batsensis HTCC2597]
          Length = 202

 Score =  257 bits (658), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 93/201 (46%), Positives = 137/201 (68%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   +++LG +I       V     ++ EL++DV   ++     FLR D  C F  +ID+
Sbjct: 1   MTEALKELGSHIEMKRPDCVLGWEITLDELTIDVTPANIAGFVEFLRTDATCRFTTLIDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
            GVD+  R  RFD++YHFLS   N R+R+++A  E + VP+I  ++P A+W+EREV+DM+
Sbjct: 61  TGVDYPERPKRFDLIYHFLSMYQNHRVRLRLAAREDEMVPTITEVHPSANWYEREVFDMF 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPD+RR+LTDYGF G+PLRKDFP TG+ E+ YD+  K+VVY PV+L+QE+R +D
Sbjct: 121 GIIFSGHPDMRRLLTDYGFRGYPLRKDFPTTGYTEVRYDETTKRVVYEPVKLVQEYRQFD 180

Query: 181 FLSPWEGVNSLFAKEDSKDDM 201
           F+SPWEG N +   ++ K++ 
Sbjct: 181 FMSPWEGANYILPGDEKKEEA 201


>gi|163741490|ref|ZP_02148881.1| NADH dehydrogenase subunit C [Phaeobacter gallaeciensis 2.10]
 gi|161385224|gb|EDQ09602.1| NADH dehydrogenase subunit C [Phaeobacter gallaeciensis 2.10]
          Length = 201

 Score =  257 bits (658), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 94/198 (47%), Positives = 133/198 (67%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + +LG  I       V     +  EL++DV   +L     FL+ D  C F +++D+
Sbjct: 1   MTEALNELGTQIAAKRPDCVIGWDVTFDELNVDVAPSNLAGFVEFLKADATCKFSSLVDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
             VD+  R  RFDVVYHFLS   N+R+R+++++ E + +PSIV I+P ++WFEREV+DM+
Sbjct: 61  TAVDYPDRPKRFDVVYHFLSMYQNQRIRLRVSIREDEMLPSIVTIHPSSNWFEREVFDMF 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGF G+PLRKDFP TG+ E+ YD+  K+VVY PV L+QE+R +D
Sbjct: 121 GILFTGHPDLRRILTDYGFRGYPLRKDFPTTGYTEVRYDEAQKRVVYEPVNLVQEYRQFD 180

Query: 181 FLSPWEGVNSLFAKEDSK 198
           F+SPWEG   +   ++ +
Sbjct: 181 FMSPWEGAEYILPGDEKE 198


>gi|254485931|ref|ZP_05099136.1| NADH-quinone oxidoreductase chain c [Roseobacter sp. GAI101]
 gi|214042800|gb|EEB83438.1| NADH-quinone oxidoreductase chain c [Roseobacter sp. GAI101]
          Length = 201

 Score =  257 bits (658), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 98/198 (49%), Positives = 137/198 (69%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  ++ +LG Y+       +     S GEL++DV   +L  L  F++ D  C F +++D+
Sbjct: 1   MSEQLNELGAYLEAKRPDCILGWDISHGELNMDVTKANLPGLVDFIKGDATCRFSSLVDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
             VD+  R+ RFDVVYHFLS   N+R+R+++A+ E   VPSIV I+P A+WFEREV+DM+
Sbjct: 61  TAVDYPGRAKRFDVVYHFLSMYQNQRIRLRVAIREEDMVPSIVDIHPSANWFEREVFDMF 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRR+LTDYGF GHPLRKDFP TG+ E+ YD+  K+VVY PV L+QE+R +D
Sbjct: 121 GILFSGHPDLRRLLTDYGFRGHPLRKDFPTTGYTEVRYDEAEKRVVYEPVSLVQEYRQFD 180

Query: 181 FLSPWEGVNSLFAKEDSK 198
           F+SPWEG   +   ++ +
Sbjct: 181 FMSPWEGAEYILPGDEKE 198


>gi|323138147|ref|ZP_08073220.1| NADH (or F420H2) dehydrogenase, subunit C [Methylocystis sp. ATCC
           49242]
 gi|322396609|gb|EFX99137.1| NADH (or F420H2) dehydrogenase, subunit C [Methylocystis sp. ATCC
           49242]
          Length = 200

 Score =  257 bits (657), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 102/198 (51%), Positives = 138/198 (69%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           MV + E LG  I ++  G+V     + GEL+L V     + + +FLRDD  C FVN+ID+
Sbjct: 1   MVGEFEALGARISDALPGAVTNVNVAYGELTLTVARDRWLDVATFLRDDAECLFVNVIDV 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
              D+  R  RF+VV H  SPK+NRR+R+K   +E   V S+V ++PGADW+ERE +D++
Sbjct: 61  TAADYPEREERFEVVAHLQSPKHNRRIRIKTPASEETPVASLVPLFPGADWYERETYDLF 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           G+ F GHPDLRRI+TDYGF+GHPLRKDFP+TGFVE+ YDD+ K+VVY PV L QE+R++D
Sbjct: 121 GVIFSGHPDLRRIMTDYGFDGHPLRKDFPMTGFVEVRYDDEQKRVVYEPVRLTQEYRNFD 180

Query: 181 FLSPWEGVNSLFAKEDSK 198
           FLSPWE V      ++  
Sbjct: 181 FLSPWEAVQYDLPGDEKA 198


>gi|254437425|ref|ZP_05050919.1| NADH dehydrogenase, subunit C subfamily, putative [Octadecabacter
           antarcticus 307]
 gi|198252871|gb|EDY77185.1| NADH dehydrogenase, subunit C subfamily, putative [Octadecabacter
           antarcticus 307]
          Length = 211

 Score =  257 bits (657), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 93/199 (46%), Positives = 129/199 (64%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +  + +LG +I       V     + GEL+++V   +L     FL+ D  C F +++D+ 
Sbjct: 10  IEALNELGIHIEMKRPDCVLSWDVTGGELTVNVAPANLAVFIEFLKVDSACKFSSLVDIT 69

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD+  R  RFDVVYHFLS   N R+R++  V   + V SI  ++  A+WFEREV+DM+G
Sbjct: 70  AVDYPGRDKRFDVVYHFLSMYQNHRIRLRAKVRSDEMVASITDVHKSANWFEREVFDMFG 129

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           I F+GHPDLRRILTDYGF G+PLRKDFP TG+ E+ YD+  K+VVY PV L+QE+R +DF
Sbjct: 130 IIFKGHPDLRRILTDYGFRGYPLRKDFPTTGYTEVRYDEVQKRVVYEPVSLVQEYRQFDF 189

Query: 182 LSPWEGVNSLFAKEDSKDD 200
           +SPWEG   +   +D   D
Sbjct: 190 MSPWEGAQYILPGDDKAKD 208


>gi|146278042|ref|YP_001168201.1| NADH dehydrogenase subunit C [Rhodobacter sphaeroides ATCC 17025]
 gi|226737323|sp|A4WU32|NUOC_RHOS5 RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|145556283|gb|ABP70896.1| NADH (or F420H2) dehydrogenase, subunit C [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 200

 Score =  257 bits (656), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 96/198 (48%), Positives = 133/198 (67%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   +++L  ++      ++       GEL+LDV    +V L  FLR D  C F +++D+
Sbjct: 1   MAEALQELAAHVEMRQPDAILGHRIEFGELTLDVAPNRIVGLVEFLRTDARCRFSSLVDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
             VD   R  RFD+VYHFLS   N R+R+K+ V E ++V SI  ++P A+WFEREV+DM+
Sbjct: 61  TAVDHPERPARFDMVYHFLSMYQNHRIRLKMQVREDETVASIHSVHPSANWFEREVFDMF 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGF GHP+RKDFP TG+ E+ YD+  K+V+Y PV+L+QE+R +D
Sbjct: 121 GILFTGHPDLRRILTDYGFRGHPMRKDFPTTGYTEVRYDEVQKRVIYEPVKLVQEYRQFD 180

Query: 181 FLSPWEGVNSLFAKEDSK 198
           FLSPWEG + +   +D  
Sbjct: 181 FLSPWEGADYILPGDDKA 198


>gi|163793189|ref|ZP_02187165.1| NADH dehydrogenase subunit C [alpha proteobacterium BAL199]
 gi|159181835|gb|EDP66347.1| NADH dehydrogenase subunit C [alpha proteobacterium BAL199]
          Length = 214

 Score =  257 bits (656), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 97/201 (48%), Positives = 130/201 (64%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +  + DL  +I +     V       GEL L      ++ + +FLRDD  C F  ++DLC
Sbjct: 10  ITALRDLAAHIESQLDQDVSDVTLIQGELCLRCRPSSVIKVLTFLRDDSQCQFKALMDLC 69

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
           GVD   R  RFDVVY+ LS + N R+R+K+A  E   VPS  G++  A W ERE WD++G
Sbjct: 70  GVDHPQREQRFDVVYNLLSIRQNTRVRLKVATDENTPVPSATGLFSSAGWMEREAWDLFG 129

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           I+F  HPDLRR+LTDYGFEGHPLRKDFP+TG+VE+ YDD  K+VVY PV+L Q+ R++DF
Sbjct: 130 IYFSEHPDLRRLLTDYGFEGHPLRKDFPLTGYVEVRYDDAQKRVVYEPVKLTQDFRNFDF 189

Query: 182 LSPWEGVNSLFAKEDSKDDMS 202
           LSPWEG  +    ++  D  +
Sbjct: 190 LSPWEGARAALPGDEKADQTA 210


>gi|62289753|ref|YP_221546.1| NADH dehydrogenase subunit C [Brucella abortus bv. 1 str. 9-941]
 gi|82699681|ref|YP_414255.1| NADH dehydrogenase subunit C [Brucella melitensis biovar Abortus
           2308]
 gi|189023998|ref|YP_001934766.1| NADH dehydrogenase subunit C [Brucella abortus S19]
 gi|237815240|ref|ZP_04594238.1| NADH (or F420H2) dehydrogenase, subunit C [Brucella abortus str.
           2308 A]
 gi|254689060|ref|ZP_05152314.1| NADH dehydrogenase subunit C [Brucella abortus bv. 6 str. 870]
 gi|254697194|ref|ZP_05159022.1| NADH dehydrogenase subunit C [Brucella abortus bv. 2 str. 86/8/59]
 gi|254730090|ref|ZP_05188668.1| NADH dehydrogenase subunit C [Brucella abortus bv. 4 str. 292]
 gi|256257309|ref|ZP_05462845.1| NADH dehydrogenase subunit C [Brucella abortus bv. 9 str. C68]
 gi|260545497|ref|ZP_05821238.1| trifunctional NADH dehydrogenase I subunit B/C/D [Brucella abortus
           NCTC 8038]
 gi|260754558|ref|ZP_05866906.1| NADH dehydrogenase subunit C [Brucella abortus bv. 6 str. 870]
 gi|260757779|ref|ZP_05870127.1| NADH dehydrogenase subunit C [Brucella abortus bv. 4 str. 292]
 gi|260761604|ref|ZP_05873947.1| NADH dehydrogenase subunit C [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883585|ref|ZP_05895199.1| NADH-quinone oxidoreductase subunit C [Brucella abortus bv. 9 str.
           C68]
 gi|297248158|ref|ZP_06931876.1| NADH dehydrogenase I subunit C [Brucella abortus bv. 5 str. B3196]
 gi|75505304|sp|Q57DU9|NUOC_BRUAB RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|123546614|sp|Q2YNC7|NUOC_BRUA2 RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|218534245|sp|B2S545|NUOC_BRUA1 RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|62195885|gb|AAX74185.1| NuoC, NADH dehydrogenase I, C subunit [Brucella abortus bv. 1 str.
           9-941]
 gi|82615782|emb|CAJ10780.1| NADH dehydrogenase (ubiquinone), 30 kDa subunit [Brucella
           melitensis biovar Abortus 2308]
 gi|189019570|gb|ACD72292.1| NADH dehydrogenase (ubiquinone), 30 kDa subunit [Brucella abortus
           S19]
 gi|237790077|gb|EEP64287.1| NADH (or F420H2) dehydrogenase, subunit C [Brucella abortus str.
           2308 A]
 gi|260096904|gb|EEW80779.1| trifunctional NADH dehydrogenase I subunit B/C/D [Brucella abortus
           NCTC 8038]
 gi|260668097|gb|EEX55037.1| NADH dehydrogenase subunit C [Brucella abortus bv. 4 str. 292]
 gi|260672036|gb|EEX58857.1| NADH dehydrogenase subunit C [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674666|gb|EEX61487.1| NADH dehydrogenase subunit C [Brucella abortus bv. 6 str. 870]
 gi|260873113|gb|EEX80182.1| NADH-quinone oxidoreductase subunit C [Brucella abortus bv. 9 str.
           C68]
 gi|297175327|gb|EFH34674.1| NADH dehydrogenase I subunit C [Brucella abortus bv. 5 str. B3196]
          Length = 202

 Score =  257 bits (656), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 104/200 (52%), Positives = 138/200 (69%), Gaps = 1/200 (0%)

Query: 1   MVR-KIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIID 59
           M    + +L  YI      ++  A  + GEL+L V    L+ + + LRDD  C FVN+ D
Sbjct: 1   MSEEALGELSGYIRERLGDAIEEANLAYGELTLCVPVASLIGVLTLLRDDVQCQFVNLTD 60

Query: 60  LCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDM 119
           + GVD+  R  RFDVVY  LSP+ N+R+RVK+   E   VPS V ++ GA+W+ERE +DM
Sbjct: 61  ISGVDYPQREKRFDVVYQLLSPRQNQRIRVKVQADEDTLVPSAVPVFFGAEWYEREAYDM 120

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDY 179
           YGI F GHPDLRRILTDYGFEGHPLRKDFP+TGFVE+ Y+D++K+VVY PV+L QE R++
Sbjct: 121 YGILFSGHPDLRRILTDYGFEGHPLRKDFPLTGFVEVRYNDELKRVVYEPVQLRQEFRNF 180

Query: 180 DFLSPWEGVNSLFAKEDSKD 199
           DFLSPWEG + +   ++   
Sbjct: 181 DFLSPWEGTDYVLPGDEKAK 200


>gi|218529212|ref|YP_002420028.1| NADH (or F420H2) dehydrogenase, subunit C [Methylobacterium
           chloromethanicum CM4]
 gi|218521515|gb|ACK82100.1| NADH (or F420H2) dehydrogenase, subunit C [Methylobacterium
           chloromethanicum CM4]
          Length = 219

 Score =  257 bits (656), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 98/195 (50%), Positives = 134/195 (68%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
             +  +G+ I  +   +V     + GEL+L V   D+V   ++LRD+P C F   ID+CG
Sbjct: 22  DALRAMGERIAGALGPAVTEWAITRGELTLVVQGSDIVYALTYLRDEPACAFRCFIDICG 81

Query: 63  VDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGI 122
           VD+  R+ RFDVVYH LS ++N R+RVK+       VPS + ++P A+W+ERE +D+YGI
Sbjct: 82  VDYPQRARRFDVVYHLLSLRHNMRVRVKVQTDAATPVPSAIPVFPAANWYERETYDLYGI 141

Query: 123 FFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFL 182
            F GHPDLRR+LTDYGFEGHPLRKDFP+TGFVE+ YD    +VVY PV+L QE R++DFL
Sbjct: 142 LFSGHPDLRRLLTDYGFEGHPLRKDFPLTGFVEVRYDQDEARVVYEPVKLTQEFRNFDFL 201

Query: 183 SPWEGVNSLFAKEDS 197
           SPWEG + +   ++ 
Sbjct: 202 SPWEGTDYVLPGDEK 216


>gi|254560051|ref|YP_003067146.1| NADH-quinone oxidoreductase subunit C [Methylobacterium extorquens
           DM4]
 gi|254267329|emb|CAX23161.1| NADH-quinone oxidoreductase chain C (NADH dehydrogenase I, chain C)
           [Methylobacterium extorquens DM4]
          Length = 224

 Score =  257 bits (656), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 98/195 (50%), Positives = 134/195 (68%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
             +  +G+ I  +   +V     + GEL+L V   D+V   ++LRD+P C F   ID+CG
Sbjct: 27  DALRAMGERIAGALGPAVTEWAITRGELTLVVQGSDIVYALTYLRDEPACAFRCFIDICG 86

Query: 63  VDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGI 122
           VD+  R+ RFDVVYH LS ++N R+RVK+       VPS + ++P A+W+ERE +D+YGI
Sbjct: 87  VDYPQRARRFDVVYHLLSLRHNMRVRVKVQTDAATPVPSAIPVFPAANWYERETYDLYGI 146

Query: 123 FFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFL 182
            F GHPDLRR+LTDYGFEGHPLRKDFP+TGFVE+ YD    +VVY PV+L QE R++DFL
Sbjct: 147 LFSGHPDLRRLLTDYGFEGHPLRKDFPLTGFVEVRYDQDEARVVYEPVKLTQEFRNFDFL 206

Query: 183 SPWEGVNSLFAKEDS 197
           SPWEG + +   ++ 
Sbjct: 207 SPWEGTDYVLPGDEK 221


>gi|239831688|ref|ZP_04680017.1| NADH (or F420H2) dehydrogenase, subunit C [Ochrobactrum intermedium
           LMG 3301]
 gi|239823955|gb|EEQ95523.1| NADH (or F420H2) dehydrogenase, subunit C [Ochrobactrum intermedium
           LMG 3301]
          Length = 204

 Score =  257 bits (656), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 102/200 (51%), Positives = 140/200 (70%), Gaps = 1/200 (0%)

Query: 1   MVR-KIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIID 59
           M    + +L  YI      ++  A  + GEL+L V    ++S+ +FLRDD  C FVN+ D
Sbjct: 3   MSEEALGELSGYIKERLGDAIEEAKLAYGELTLSVPVASIISVLTFLRDDVQCQFVNLTD 62

Query: 60  LCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDM 119
           + GVD+  R+ RFDVVY  +SP+ N+R+RVK+   E   VPS V ++ GA+WFERE +DM
Sbjct: 63  ISGVDYPQRAKRFDVVYQLMSPRQNQRIRVKVQADEDTLVPSAVPVFVGAEWFERETYDM 122

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDY 179
           YG+ F GHPDLRRILTDYGFEGHPLRKDFP+TGFVE+ Y++++K+V Y PV+L QE R++
Sbjct: 123 YGVLFSGHPDLRRILTDYGFEGHPLRKDFPLTGFVEVRYNNELKRVAYEPVQLRQEFRNF 182

Query: 180 DFLSPWEGVNSLFAKEDSKD 199
           DFLSPWEG + +   ++   
Sbjct: 183 DFLSPWEGTDYVLPGDEKAK 202


>gi|83858413|ref|ZP_00951935.1| NADH dehydrogenase subunit C [Oceanicaulis alexandrii HTCC2633]
 gi|83853236|gb|EAP91088.1| NADH dehydrogenase subunit C [Oceanicaulis alexandrii HTCC2633]
          Length = 205

 Score =  257 bits (656), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 103/198 (52%), Positives = 139/198 (70%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + +LG ++  + S  VR    +  EL+L +    +V +  FLRDD  C F  +ID+
Sbjct: 3   MTETMTELGAHLSAALSDDVRSVDVAHEELTLTIHRDRVVKVLRFLRDDALCRFTTLIDI 62

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
           CGVD+ SRS+RFDVVYH LS   N+R+RV ++  E   V S+V ++P A+WFERE +DMY
Sbjct: 63  CGVDWPSRSDRFDVVYHLLSMHLNQRIRVVLSTDEDTPVNSVVELFPAANWFEREAFDMY 122

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F+ HPDLRRILTDYGF GHPLRKDFP++GF ++ YDD+ K+VVY PVEL+QE+RD+D
Sbjct: 123 GILFDHHPDLRRILTDYGFHGHPLRKDFPLSGFNQVVYDDEQKRVVYEPVELVQEYRDFD 182

Query: 181 FLSPWEGVNSLFAKEDSK 198
           FLSPWEG   +   ++  
Sbjct: 183 FLSPWEGAKYVLPGDEKA 200


>gi|23013442|ref|ZP_00053336.1| COG0852: NADH:ubiquinone oxidoreductase 27 kD subunit
           [Magnetospirillum magnetotacticum MS-1]
          Length = 199

 Score =  256 bits (655), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 107/200 (53%), Positives = 140/200 (70%), Gaps = 2/200 (1%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSV-GELSLDVDCGDLVSLCSFLRDDPHCCFVNIID 59
           M + ++DLGDYI  +    V     +   ELSL V    +V + SFL+DD  C F  ++D
Sbjct: 1   MTQALKDLGDYIAQALPQDVLGTEVNRCDELSLTVKAASIVKVLSFLKDDAGCLFKQLVD 60

Query: 60  LCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDM 119
           +CGVD+  R +RFDVVYH LS K+N+R+RVK+A  E  +VPS   ++  A WFEREVWDM
Sbjct: 61  VCGVDWPGRESRFDVVYHLLSMKHNQRIRVKVATDEETAVPSATAVFSSAGWFEREVWDM 120

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDY 179
           YG+ F  HPDLRRILTDYGFEGHPLRKDFP+TG+VE+ YDD+ K+VVY PV+L Q+ R +
Sbjct: 121 YGVLFSDHPDLRRILTDYGFEGHPLRKDFPLTGYVEMRYDDETKRVVYEPVKLTQDFRSF 180

Query: 180 DFLSPWEGVNSLFAKEDSKD 199
           DFLSPWEG   +   ++  +
Sbjct: 181 DFLSPWEGPG-MLPGDEKAN 199


>gi|240137580|ref|YP_002962051.1| NADH-quinone oxidoreductase chain C (NADH dehydrogenase I, chain C)
           [Methylobacterium extorquens AM1]
 gi|240007548|gb|ACS38774.1| NADH-quinone oxidoreductase chain C (NADH dehydrogenase I, chain C)
           [Methylobacterium extorquens AM1]
          Length = 224

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 99/195 (50%), Positives = 134/195 (68%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
             +  +G+ I  +   +V     S GEL+L V   D+V   ++LRD+P C F   ID+CG
Sbjct: 27  DALRAMGERIAGALGPAVTEWAISRGELTLVVQGSDIVYALTYLRDEPACAFRCFIDICG 86

Query: 63  VDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGI 122
           VD+  R+ RFDVVYH LS ++N R+RVK+       VPS + ++P A+W+ERE +D+YGI
Sbjct: 87  VDYPQRARRFDVVYHLLSLRHNMRVRVKVQTDAATPVPSAIPVFPAANWYERETYDLYGI 146

Query: 123 FFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFL 182
            F GHPDLRR+LTDYGFEGHPLRKDFP+TGFVE+ YD    +VVY PV+L QE R++DFL
Sbjct: 147 LFSGHPDLRRLLTDYGFEGHPLRKDFPLTGFVEVRYDQDEARVVYEPVKLTQEFRNFDFL 206

Query: 183 SPWEGVNSLFAKEDS 197
           SPWEG + +   ++ 
Sbjct: 207 SPWEGTDYVLPGDEK 221


>gi|163850515|ref|YP_001638558.1| NADH (or F420H2) dehydrogenase, subunit C [Methylobacterium
           extorquens PA1]
 gi|218534307|sp|A9W1N1|NUOC_METEP RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|163662120|gb|ABY29487.1| NADH (or F420H2) dehydrogenase, subunit C [Methylobacterium
           extorquens PA1]
          Length = 219

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 98/195 (50%), Positives = 134/195 (68%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
             +  +G+ I  +   +V     + GEL+L V   D+V   ++LRD+P C F   ID+CG
Sbjct: 22  DALRAMGERIAGALGPAVTEWAITRGELTLVVQGSDIVYALTYLRDEPACAFRCFIDICG 81

Query: 63  VDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGI 122
           VD+  R+ RFDVVYH LS ++N R+RVK+       VPS + ++P A+W+ERE +D+YGI
Sbjct: 82  VDYPQRARRFDVVYHLLSLRHNMRVRVKVQTDAATPVPSAIPVFPAANWYERETYDLYGI 141

Query: 123 FFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFL 182
            F GHPDLRR+LTDYGFEGHPLRKDFP+TGFVE+ YD    +VVY PV+L QE R++DFL
Sbjct: 142 LFSGHPDLRRLLTDYGFEGHPLRKDFPLTGFVEVRYDQDEARVVYEPVKLTQEFRNFDFL 201

Query: 183 SPWEGVNSLFAKEDS 197
           SPWEG + +   ++ 
Sbjct: 202 SPWEGTDYVLPGDEK 216


>gi|255263161|ref|ZP_05342503.1| NADH-quinone oxidoreductase subunit c [Thalassiobium sp. R2A62]
 gi|255105496|gb|EET48170.1| NADH-quinone oxidoreductase subunit c [Thalassiobium sp. R2A62]
          Length = 203

 Score =  256 bits (654), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 99/201 (49%), Positives = 135/201 (67%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M +++ DLG +IV      V     S GEL++ V   +LV    FL+ D  C    ++D+
Sbjct: 1   MSQEMNDLGAHIVAKRPDCVLSHEVSYGELNVTVSVSNLVDFVEFLKSDATCKLSTLVDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
             VD+ SR+ RFDVVYH LS   N R+R+++ + E   VPSI+ +YP A+WFEREV+DM+
Sbjct: 61  TAVDYPSRAKRFDVVYHMLSMYQNHRIRIRVQIREEDMVPSIIDVYPAANWFEREVFDMF 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGF G+PLRKDFP TG+ E+ YD+  K+VVY PV L+QE+R +D
Sbjct: 121 GILFSGHPDLRRILTDYGFRGYPLRKDFPTTGYTEVRYDEAEKRVVYEPVSLVQEYRQFD 180

Query: 181 FLSPWEGVNSLFAKEDSKDDM 201
           F+SPWEG   +   +D  ++ 
Sbjct: 181 FMSPWEGAEYILPGDDKVEEA 201


>gi|114771818|ref|ZP_01449211.1| NADH dehydrogenase subunit C [alpha proteobacterium HTCC2255]
 gi|114547634|gb|EAU50525.1| NADH dehydrogenase subunit C [alpha proteobacterium HTCC2255]
          Length = 202

 Score =  256 bits (653), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 103/200 (51%), Positives = 137/200 (68%), Gaps = 1/200 (0%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFA-VNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIID 59
           M   + DLG+ I +    +V  + VN  GEL L+V    +V++  FL+ +    F  +ID
Sbjct: 1   MSNTLTDLGEVIASKLPNAVTASGVNDFGELVLNVKLEKIVTVVEFLKTNSAMRFSTLID 60

Query: 60  LCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDM 119
           +  +D+ SR NRF++VYHFLS   N R+R+K+ V+E   VPSI  I+PGA+WFEREV+DM
Sbjct: 61  ITAIDYPSRKNRFEMVYHFLSMYTNMRIRLKLQVSEDGMVPSICEIHPGANWFEREVFDM 120

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDY 179
           YG+ F GHPDLRRILTDYGF GHPLRKDFP TG+ EL YD+  K+VVY PV L QE+R +
Sbjct: 121 YGVLFSGHPDLRRILTDYGFRGHPLRKDFPTTGYTELRYDEVGKRVVYEPVTLTQEYRQF 180

Query: 180 DFLSPWEGVNSLFAKEDSKD 199
           DF+SPWEG   +   +D  +
Sbjct: 181 DFMSPWEGAQYILPGDDKVE 200


>gi|260574760|ref|ZP_05842763.1| NADH (or F420H2) dehydrogenase, subunit C [Rhodobacter sp. SW2]
 gi|259023177|gb|EEW26470.1| NADH (or F420H2) dehydrogenase, subunit C [Rhodobacter sp. SW2]
          Length = 200

 Score =  256 bits (653), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 99/198 (50%), Positives = 131/198 (66%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + +L   +    S +V       GEL+++V    L  L  FLR D  C F  +ID+
Sbjct: 1   MPEALNELAGLLELKQSNAVLGHAVENGELTVEVSVARLHGLVDFLRGDAACRFSTLIDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
             VD+  R+ RFDVVYH LS   N+R+R+  AV E + VPS+V ++PGA+W+EREV+DM+
Sbjct: 61  TAVDYPGRAARFDVVYHLLSMYQNQRIRLVAAVREDEMVPSLVSLFPGANWYEREVFDMF 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGF GHPLRKDFP TG+ E+ YDD  K+VVY PV L QE+R +D
Sbjct: 121 GILFSGHPDLRRILTDYGFRGHPLRKDFPTTGYTEVRYDDVQKRVVYEPVSLTQEYRQFD 180

Query: 181 FLSPWEGVNSLFAKEDSK 198
           F+SPWEG   +   ++ +
Sbjct: 181 FMSPWEGAAYILPGDEKQ 198


>gi|89053662|ref|YP_509113.1| NADH dehydrogenase subunit C [Jannaschia sp. CCS1]
 gi|122499243|sp|Q28T74|NUOC_JANSC RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|88863211|gb|ABD54088.1| NADH dehydrogenase subunit C [Jannaschia sp. CCS1]
          Length = 207

 Score =  256 bits (653), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 99/203 (48%), Positives = 137/203 (67%), Gaps = 1/203 (0%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSV-GELSLDVDCGDLVSLCSFLRDDPHCCFVNIID 59
           M   +++L +Y+    S  V     +  GELS+ V    +V    FL+ D  C F  +ID
Sbjct: 1   MSDALKELAEYLSEKRSDDVVSTDVNAMGELSVTVAPAQMVGFIEFLKTDRTCRFSTLID 60

Query: 60  LCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDM 119
           +  VD+ SR  RFDVVYHFLS   N R+RV+ A+ E  ++PSI G++PGA W+ERE++DM
Sbjct: 61  ITAVDYPSRDRRFDVVYHFLSMYQNHRVRVRAAIREEDTLPSISGVHPGAGWYEREIYDM 120

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDY 179
           +GI F GH DLRR+LTDYGF GHPLRKDFP TG+ E+ YD+++K+VVY PV L+QE+R +
Sbjct: 121 FGILFTGHADLRRLLTDYGFRGHPLRKDFPTTGYTEVRYDEELKRVVYEPVSLVQEYRQF 180

Query: 180 DFLSPWEGVNSLFAKEDSKDDMS 202
           DF+SPWEG   +   ++  DD +
Sbjct: 181 DFMSPWEGAQYVLPGDEKADDKA 203


>gi|296444796|ref|ZP_06886759.1| NADH (or F420H2) dehydrogenase, subunit C [Methylosinus
           trichosporium OB3b]
 gi|296257744|gb|EFH04808.1| NADH (or F420H2) dehydrogenase, subunit C [Methylosinus
           trichosporium OB3b]
          Length = 200

 Score =  256 bits (653), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 98/198 (49%), Positives = 134/198 (67%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  ++E LG+ +  +  G V     + GEL+++V+    +     LRDDP   FV+ ID+
Sbjct: 1   MSAELELLGEKVAAALPGIVTGLKIAYGELTIEVERSRWLDAARALRDDPELLFVSFIDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
              D+  R  RFDVV H LSP+ N+R+R+K    E   V S+  +YPGADWFERE +D++
Sbjct: 61  TAADYPEREQRFDVVTHLLSPRRNQRIRIKTQTDEATPVTSLTSLYPGADWFERETYDLF 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           G+ F+GHPDLRRI+TDYGF+GHPLRKDFP+TG+VE+ YDD+ K+VVY PV L QE+R +D
Sbjct: 121 GVIFDGHPDLRRIMTDYGFDGHPLRKDFPMTGYVEVRYDDERKRVVYEPVNLTQEYRKFD 180

Query: 181 FLSPWEGVNSLFAKEDSK 198
           FLSPWEGV      ++  
Sbjct: 181 FLSPWEGVQYDLPGDEKA 198


>gi|254504711|ref|ZP_05116862.1| putative NADH dehydrogenase, subunit C subfamily [Labrenzia
           alexandrii DFL-11]
 gi|222440782|gb|EEE47461.1| putative NADH dehydrogenase, subunit C subfamily [Labrenzia
           alexandrii DFL-11]
          Length = 201

 Score =  256 bits (653), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 106/198 (53%), Positives = 141/198 (71%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   +++L ++I    S S+       GEL+L V+  D++ +  +LRD+  C FVN+ D+
Sbjct: 1   MDETLKELAEHIELGLSESLVSWKVEYGELTLVVNASDILDVVRYLRDNASCKFVNLTDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
           CGVD+ +R  RFDVVYHFLSP  N+R+RVK+   +   V S+  ++PGA+WFERE +DMY
Sbjct: 61  CGVDYPAREKRFDVVYHFLSPFQNQRIRVKLETDDVTPVASLTSLFPGAEWFEREAYDMY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGF+GHPLRKDFPVTGFVE+ YDD+ K+VVY PV L QE R +D
Sbjct: 121 GILFSGHPDLRRILTDYGFDGHPLRKDFPVTGFVEVRYDDEKKRVVYEPVRLNQEMRTFD 180

Query: 181 FLSPWEGVNSLFAKEDSK 198
           FLSPWEG + +   ++  
Sbjct: 181 FLSPWEGTDYVLPGDEKA 198


>gi|75676077|ref|YP_318498.1| NADH dehydrogenase subunit C [Nitrobacter winogradskyi Nb-255]
 gi|74420947|gb|ABA05146.1| NADH dehydrogenase subunit C [Nitrobacter winogradskyi Nb-255]
          Length = 206

 Score =  255 bits (652), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 102/199 (51%), Positives = 136/199 (68%), Gaps = 1/199 (0%)

Query: 1   MVR-KIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIID 59
           M   +++ LG  IV +  G+      S G+L++ V+   +V +  FLRDD  C FVN ID
Sbjct: 1   MDESRLDALGQMIVATLPGAATGHSVSFGQLTVTVEAAKIVEVARFLRDDRRCRFVNFID 60

Query: 60  LCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDM 119
              VD+  R  RFDVVYHFLSP  N R+R++   +E   VPS++ ++PGADWFERE +D+
Sbjct: 61  ATAVDYPGREKRFDVVYHFLSPTLNARIRLRAHASETTQVPSLIDVFPGADWFEREAYDL 120

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDY 179
           YG+ F GHPD+RR+LTDYGF+GHPLRKDFP+TGFVE+ YDD  K+VVY PV L QE R +
Sbjct: 121 YGVIFTGHPDMRRLLTDYGFDGHPLRKDFPLTGFVEVRYDDAEKRVVYEPVRLNQEFRKF 180

Query: 180 DFLSPWEGVNSLFAKEDSK 198
           DF+SPWEG +     ++  
Sbjct: 181 DFMSPWEGADYPLPGDEKA 199


>gi|15888599|ref|NP_354280.1| NADH dehydrogenase subunit C [Agrobacterium tumefaciens str. C58]
 gi|218534249|sp|A9CJB1|NUOC_AGRT5 RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|15156319|gb|AAK87065.1| NADH ubiquinone oxidoreductase chain C [Agrobacterium tumefaciens
           str. C58]
          Length = 200

 Score =  255 bits (652), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 114/199 (57%), Positives = 143/199 (71%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + DL  Y+  +    V  A  + GEL+L+    ++++L +FLRDD  C FVNIID+
Sbjct: 1   MSEALNDLAAYVKEARGSLVVSADIAYGELTLNTTPENVIALLTFLRDDVQCGFVNIIDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
           CGVD+  R  RFDVVYH LSP+ N R+R+K+ VAE + VPS   +Y GA+WFERE WDMY
Sbjct: 61  CGVDWPQREKRFDVVYHLLSPRQNLRVRIKLQVAEDEGVPSSTPVYMGAEWFEREAWDMY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI FEGH DLRRILTDYGFEGHPLRKDFPVTGFVE+ YDD +K+V+Y PVEL QE R++D
Sbjct: 121 GIPFEGHKDLRRILTDYGFEGHPLRKDFPVTGFVEVRYDDVLKRVLYEPVELKQEFRNFD 180

Query: 181 FLSPWEGVNSLFAKEDSKD 199
           FLSPWEG   +   ++   
Sbjct: 181 FLSPWEGTEYVLPGDEKAK 199


>gi|221638928|ref|YP_002525190.1| NADH dehydrogenase subunit C [Rhodobacter sphaeroides KD131]
 gi|254767813|sp|B9KQW2|NUOC_RHOSK RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|221159709|gb|ACM00689.1| NADH-quinone oxidoreductase [Rhodobacter sphaeroides KD131]
          Length = 200

 Score =  255 bits (652), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 97/198 (48%), Positives = 134/198 (67%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   +++L  ++      ++       GEL+LDV    +V L  FLR D  C F +++D+
Sbjct: 1   MPEALQELAAHVQMRQPDAILGHRVEFGELTLDVVPNRIVGLVEFLRSDASCRFSSLVDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
             +D   R  RFDVVYHFLS   N+R+R+K+ V E ++V SI  ++P A+WFEREV+DM+
Sbjct: 61  TAIDHPERPARFDVVYHFLSMYQNQRIRLKMQVREDETVASIHSVHPSANWFEREVFDMF 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGF GHP+RKDFP TG+ E+ YD+  K+VVY PV+L+QE+R +D
Sbjct: 121 GILFTGHPDLRRILTDYGFRGHPMRKDFPTTGYTEVRYDEVQKRVVYEPVKLVQEYRQFD 180

Query: 181 FLSPWEGVNSLFAKEDSK 198
           FLSPWEG + +   +D  
Sbjct: 181 FLSPWEGADYILPGDDKA 198


>gi|298291845|ref|YP_003693784.1| NADH (or F420H2) dehydrogenase, subunit C [Starkeya novella DSM
           506]
 gi|296928356|gb|ADH89165.1| NADH (or F420H2) dehydrogenase, subunit C [Starkeya novella DSM
           506]
          Length = 204

 Score =  255 bits (651), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 106/198 (53%), Positives = 135/198 (68%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + +LG ++  +    V   V + GEL+L  D   +  L +FLRDDP C FV+ ID+
Sbjct: 1   MDETLTELGAHVKEALPDVVEEVVVAYGELTLIADAAKVTGLLTFLRDDPSCKFVSFIDV 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
           CGVD+  R  RFDVVYH LSP  N R+RVK+   E   V S   ++PGA WFERE +DMY
Sbjct: 61  CGVDWPKREKRFDVVYHLLSPTLNARIRVKVETDETTPVASATAVFPGAFWFEREAFDMY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHP+LRRILTDYGF+G+PLRKDFP TGFVE+ YDD+ K+VVY PV+L QE R++D
Sbjct: 121 GIMFSGHPELRRILTDYGFDGYPLRKDFPTTGFVEVRYDDERKRVVYEPVKLAQEFRNFD 180

Query: 181 FLSPWEGVNSLFAKEDSK 198
           FLSPWEG   +   ++  
Sbjct: 181 FLSPWEGPEYVLPGDEKA 198


>gi|325292634|ref|YP_004278498.1| NADH dehydrogenase I, C subunit [Agrobacterium sp. H13-3]
 gi|325060487|gb|ADY64178.1| NADH dehydrogenase I, C subunit [Agrobacterium sp. H13-3]
          Length = 200

 Score =  255 bits (651), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 115/199 (57%), Positives = 143/199 (71%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + DL  Y+  +    V  A  + GEL+L+     +++L +FLRDD  C FVNIID+
Sbjct: 1   MSEALNDLAAYVKEARGSLVVSADIAYGELTLNTTTESVIALLTFLRDDVQCGFVNIIDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
           CGVD+  R  RFDVVYH LSP+ N R+R+K+ VAE + VPS   +Y GADWFERE WDMY
Sbjct: 61  CGVDWPQREKRFDVVYHLLSPRQNLRVRIKLQVAEDEGVPSATSVYMGADWFEREAWDMY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI FEGH DLRRILTDYGFEGHPLRKDFPVTGFVE+ YDD +K+V+Y PVEL QE R++D
Sbjct: 121 GIPFEGHADLRRILTDYGFEGHPLRKDFPVTGFVEVRYDDVLKRVLYEPVELKQEFRNFD 180

Query: 181 FLSPWEGVNSLFAKEDSKD 199
           FLSPWEG + +   ++   
Sbjct: 181 FLSPWEGTDYVLPGDEKAK 199


>gi|312116345|ref|YP_004013941.1| NADH (or F420H2) dehydrogenase, subunit C [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311221474|gb|ADP72842.1| NADH (or F420H2) dehydrogenase, subunit C [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 206

 Score =  254 bits (650), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 104/197 (52%), Positives = 137/197 (69%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
             K+E L + +  +F   V     ++GEL++ VD   + ++  FLR DP   F  ++D+C
Sbjct: 4   TAKLEVLAEALKGAFPEGVTETRFALGELTVLVDRARIPAIAEFLRSDPAWRFTILVDIC 63

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
           GVD+  R+ RFDVVYHFLS   N R+R+K        VPS+VG++P A+WFERE +D+YG
Sbjct: 64  GVDYPERAERFDVVYHFLSMYQNLRVRLKTTADAATPVPSLVGVFPAANWFEREAYDLYG 123

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           I FEGHPDLRRILTDYGF GHPLRKDFP+TGFVEL YD++ K+VVY PV+L QE R +DF
Sbjct: 124 ILFEGHPDLRRILTDYGFRGHPLRKDFPLTGFVELRYDEEQKRVVYEPVKLPQEFRSFDF 183

Query: 182 LSPWEGVNSLFAKEDSK 198
           LSPWEG + L   ++  
Sbjct: 184 LSPWEGADYLLPGDEKA 200


>gi|77463072|ref|YP_352576.1| NADH dehydrogenase subunit C [Rhodobacter sphaeroides 2.4.1]
 gi|126461944|ref|YP_001043058.1| NADH dehydrogenase subunit C [Rhodobacter sphaeroides ATCC 17029]
 gi|123592236|sp|Q3J3F9|NUOC_RHOS4 RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|218534328|sp|A3PIX0|NUOC_RHOS1 RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|77387490|gb|ABA78675.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain C [Rhodobacter
           sphaeroides 2.4.1]
 gi|126103608|gb|ABN76286.1| NADH (or F420H2) dehydrogenase, subunit C [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 200

 Score =  254 bits (650), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 97/198 (48%), Positives = 134/198 (67%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   +++L  ++      ++       GEL+LDV    +V L  FLR D  C F +++D+
Sbjct: 1   MPEALQELAAHVRMRQPDAILGHRVEFGELTLDVVPNRIVGLVEFLRSDASCRFSSLVDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
             +D   R  RFDVVYHFLS   N+R+R+K+ V E ++V SI  ++P A+WFEREV+DM+
Sbjct: 61  TAIDHPERPARFDVVYHFLSMYQNQRIRLKMQVREDETVASIHSVHPSANWFEREVFDMF 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGF GHP+RKDFP TG+ E+ YD+  K+VVY PV+L+QE+R +D
Sbjct: 121 GILFTGHPDLRRILTDYGFRGHPMRKDFPTTGYTEVRYDEVQKRVVYEPVKLVQEYRQFD 180

Query: 181 FLSPWEGVNSLFAKEDSK 198
           FLSPWEG + +   +D  
Sbjct: 181 FLSPWEGADYILPGDDKA 198


>gi|332557945|ref|ZP_08412267.1| NADH dehydrogenase subunit C [Rhodobacter sphaeroides WS8N]
 gi|332275657|gb|EGJ20972.1| NADH dehydrogenase subunit C [Rhodobacter sphaeroides WS8N]
          Length = 200

 Score =  254 bits (649), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 96/198 (48%), Positives = 134/198 (67%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   +++L  ++      ++       GEL+LDV    +V L  FLR D  C F +++D+
Sbjct: 1   MPEALQELAAHVQMRQPDAILGHRVEFGELTLDVVPNRIVGLVEFLRSDASCRFSSLVDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
             +D   R  RFD+VYHFLS   N+R+R+K+ V E ++V SI  ++P A+WFEREV+DM+
Sbjct: 61  TAIDHPERPARFDMVYHFLSMYQNQRIRLKMQVREDETVASIHSVHPSANWFEREVFDMF 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGF GHP+RKDFP TG+ E+ YD+  K+VVY PV+L+QE+R +D
Sbjct: 121 GILFTGHPDLRRILTDYGFRGHPMRKDFPTTGYTEVRYDEVQKRVVYEPVKLVQEYRQFD 180

Query: 181 FLSPWEGVNSLFAKEDSK 198
           FLSPWEG + +   +D  
Sbjct: 181 FLSPWEGADYILPGDDKA 198


>gi|126740378|ref|ZP_01756066.1| NADH dehydrogenase subunit C [Roseobacter sp. SK209-2-6]
 gi|126718514|gb|EBA15228.1| NADH dehydrogenase subunit C [Roseobacter sp. SK209-2-6]
          Length = 203

 Score =  254 bits (649), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 96/203 (47%), Positives = 135/203 (66%), Gaps = 4/203 (1%)

Query: 1   MVRKIED----LGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVN 56
           M   +++    LG  I       V     S GEL++DV   ++     FL+ D  C F +
Sbjct: 1   MTESLQEPLRELGAQIEAKRPDCVLSWDVSFGELNVDVAPANIAEFVEFLKTDSSCKFSS 60

Query: 57  IIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREV 116
           ++D+  VD+  R+ RFDVVYHFLS   N+R+R+++++ E   VPSIV ++P A+WFEREV
Sbjct: 61  LVDVTAVDYPERAKRFDVVYHFLSMYRNQRIRLRVSIREDDMVPSIVDVHPSANWFEREV 120

Query: 117 WDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEH 176
           +DM+GI F GHPDLRRILTDYGF G+PLRKDFP TG+ E+ YD+  K+VVY PV L+QE+
Sbjct: 121 FDMFGILFSGHPDLRRILTDYGFRGYPLRKDFPTTGYTEVRYDEAEKRVVYEPVNLVQEY 180

Query: 177 RDYDFLSPWEGVNSLFAKEDSKD 199
           R +DF+SPWEG   +   ++  +
Sbjct: 181 RQFDFMSPWEGAEYILPGDEKGE 203


>gi|126727143|ref|ZP_01742980.1| NADH dehydrogenase subunit C [Rhodobacterales bacterium HTCC2150]
 gi|126703571|gb|EBA02667.1| NADH dehydrogenase subunit C [Rhodobacterales bacterium HTCC2150]
          Length = 201

 Score =  254 bits (649), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 93/198 (46%), Positives = 135/198 (68%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   +++LG+ I    S +V       GEL +++    +V    FL+ D +C F +++D+
Sbjct: 1   MSDALKELGELIALKQSDAVLNWSVERGELCVEITANSVVEFTEFLKTDRNCQFSSLVDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
             +DF SR  RFDVVYH LS   N R+RV+  + E + +PSI+ ++P A+WFERE++DMY
Sbjct: 61  TAIDFPSRDKRFDVVYHHLSMYQNHRIRVRTQILEKEVMPSIISVHPSANWFEREIFDMY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGF G+PLRKDFP TG+ E+ YD++ K+VVY PV L+Q++R +D
Sbjct: 121 GILFSGHPDLRRILTDYGFRGYPLRKDFPTTGYTEVRYDEEQKRVVYEPVSLVQDYRQFD 180

Query: 181 FLSPWEGVNSLFAKEDSK 198
           F+SPWEG   +   ++ +
Sbjct: 181 FMSPWEGAEYILPGDEKE 198


>gi|222148276|ref|YP_002549233.1| NADH dehydrogenase subunit C [Agrobacterium vitis S4]
 gi|254767809|sp|B9JVE7|NUOC_AGRVS RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|221735264|gb|ACM36227.1| NADH ubiquinone oxidoreductase chain C [Agrobacterium vitis S4]
          Length = 200

 Score =  254 bits (649), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 110/198 (55%), Positives = 145/198 (73%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   ++ L  +I  +  G    +  + GEL++     ++ +L +FLRDD  C F+NIID+
Sbjct: 1   MSEALQVLASHITENSGGLALSSTVAFGELTVTTTVENIYALVTFLRDDARCGFINIIDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
           CGVD+  R  RF+VVYHFL+PK N+R+RVK++ +E K VPSI  ++PGADWFERE WD+Y
Sbjct: 61  CGVDYPERVERFEVVYHFLAPKQNQRIRVKLSTSEDKPVPSICPLFPGADWFEREAWDLY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           G+ F GHPDLRR+LTDYGFEGHPLRKDFP+TGFVE+ YDD VK+VVY PVEL QE R +D
Sbjct: 121 GVMFTGHPDLRRLLTDYGFEGHPLRKDFPLTGFVEVRYDDTVKRVVYEPVELKQEFRSFD 180

Query: 181 FLSPWEGVNSLFAKEDSK 198
           FLSPWEG + +   ++  
Sbjct: 181 FLSPWEGTDYVLPGDEKA 198


>gi|241518507|ref|YP_002979135.1| NADH (or F420H2) dehydrogenase, subunit C [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240862920|gb|ACS60584.1| NADH (or F420H2) dehydrogenase, subunit C [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 205

 Score =  254 bits (648), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 107/198 (54%), Positives = 138/198 (69%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + +L  Y+VN    ++      +GEL+L      ++ L  FLR+D +C FV ++D+
Sbjct: 1   MSGNLPELASYLVNKVPQAISDHQFKLGELTLHTGREHIIELLGFLRNDENCRFVCLLDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
           CGVD+  R+ RFDVVYH LSP  N RLRVK+   E  +VPS   ++P ADW+ERE WDMY
Sbjct: 61  CGVDWPGRAERFDVVYHLLSPTQNLRLRVKLETDEESAVPSACELFPCADWYEREAWDMY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGFEGHPLRKDFP+TGFVE+ YDD  K+V+Y PVEL QE+R +D
Sbjct: 121 GILFTGHPDLRRILTDYGFEGHPLRKDFPLTGFVEVRYDDAAKRVIYEPVELKQEYRHFD 180

Query: 181 FLSPWEGVNSLFAKEDSK 198
           FLSPWEG + +   ++  
Sbjct: 181 FLSPWEGTDYVLPGDEKS 198


>gi|114764720|ref|ZP_01443905.1| NADH dehydrogenase subunit C [Pelagibaca bermudensis HTCC2601]
 gi|114542920|gb|EAU45941.1| NADH dehydrogenase subunit C [Roseovarius sp. HTCC2601]
          Length = 197

 Score =  253 bits (647), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 97/195 (49%), Positives = 134/195 (68%)

Query: 5   IEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD 64
           +++LG ++       V     +  EL++DV   ++     FL+ DP C F  ++D+  VD
Sbjct: 1   MKELGGHLEIRRPDCVLGWSVAFDELTVDVTPANIPGFVEFLKTDPSCRFSTLVDITAVD 60

Query: 65  FLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFF 124
              R  RFDVVYHFLS   N+R+R+++AV E   VPS+ G +P ADWFEREV+DM+GI F
Sbjct: 61  HPERPKRFDVVYHFLSMYQNQRIRLRVAVREDDVVPSVTGTHPSADWFEREVFDMFGIIF 120

Query: 125 EGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSP 184
            GHPDLRRILTDYGF GHPLRKDFP TG+VE+ YD+++K+VVY PV L+QE+R +DF+SP
Sbjct: 121 SGHPDLRRILTDYGFRGHPLRKDFPTTGYVEVRYDEELKRVVYEPVSLVQEYRQFDFMSP 180

Query: 185 WEGVNSLFAKEDSKD 199
           WEG   +   ++  +
Sbjct: 181 WEGAQYVLPGDEKAE 195


>gi|114569907|ref|YP_756587.1| NADH dehydrogenase subunit C [Maricaulis maris MCS10]
 gi|122316123|sp|Q0APY8|NUOC_MARMM RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|114340369|gb|ABI65649.1| NADH dehydrogenase subunit C [Maricaulis maris MCS10]
          Length = 200

 Score =  253 bits (646), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 99/199 (49%), Positives = 145/199 (72%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   ++ LG++I N+   +V     + GEL++++    + ++ ++LRDDP C F  +ID+
Sbjct: 1   MSEALKVLGEHIANAQDAAVTGWSIANGELTVEIHRDRIETVLTWLRDDPACRFTTLIDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
           CGVD+  R+ RF+VVYH LS   N R+RVK++  E   VP+++ +YP ADWFERE +DMY
Sbjct: 61  CGVDYPQRAERFEVVYHLLSMHQNHRIRVKLSTDEEAPVPTVIPVYPVADWFEREAFDMY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F  HPDLRR+LTDYGFEG+PLRKDFP+TG+VE+ +D++ K+VVY PVEL+QE+RD+D
Sbjct: 121 GIVFADHPDLRRLLTDYGFEGYPLRKDFPLTGYVEVRWDEEEKRVVYEPVELVQEYRDFD 180

Query: 181 FLSPWEGVNSLFAKEDSKD 199
           F+SPWEG   +   ++  +
Sbjct: 181 FMSPWEGAKYILPGDEKAE 199


>gi|170748476|ref|YP_001754736.1| NADH (or F420H2) dehydrogenase, subunit C [Methylobacterium
           radiotolerans JCM 2831]
 gi|218534300|sp|B1LUN5|NUOC_METRJ RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|170654998|gb|ACB24053.1| NADH (or F420H2) dehydrogenase, subunit C [Methylobacterium
           radiotolerans JCM 2831]
          Length = 215

 Score =  253 bits (646), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 99/189 (52%), Positives = 134/189 (70%)

Query: 9   GDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSR 68
            + +V +   +V     + GEL+L V   D+V   ++LRDDP C F N ID+CGVD+  R
Sbjct: 24  AERVVGALGPAVVSHAIAFGELTLVVQASDIVYALTYLRDDPACAFRNFIDICGVDYPQR 83

Query: 69  SNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHP 128
             RFDVVYH LS ++N R+R+K+   E   VPS++ ++P A+W+ERE +D+YGI F GHP
Sbjct: 84  EKRFDVVYHLLSLRHNLRIRLKVQTDEVTPVPSVIEVFPAANWYERETYDLYGILFSGHP 143

Query: 129 DLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEGV 188
           DLRR+LTDYGFEGHPLRKDFP+TGFVE+ YD    +VVY PV+L QE R++DFLSPWEG 
Sbjct: 144 DLRRLLTDYGFEGHPLRKDFPLTGFVEVRYDQDQARVVYEPVQLTQEFRNFDFLSPWEGT 203

Query: 189 NSLFAKEDS 197
           + +   ++ 
Sbjct: 204 DYVLPGDEK 212


>gi|92117742|ref|YP_577471.1| NADH dehydrogenase subunit C [Nitrobacter hamburgensis X14]
 gi|91800636|gb|ABE63011.1| NADH dehydrogenase subunit C [Nitrobacter hamburgensis X14]
          Length = 206

 Score =  252 bits (644), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 99/195 (50%), Positives = 135/195 (69%)

Query: 4   KIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGV 63
           +++ LG  IV +  G+      + G+LS+ V+   +V +  F+RDD  C FVNI D+  V
Sbjct: 5   RLDALGQMIVATLPGAAIGHSVAFGQLSITVEVAKIVEVARFIRDDQRCRFVNITDVTAV 64

Query: 64  DFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIF 123
           D+  R  RFDVVY+FLSP  N R+R+    +E   VPS++ ++PGADWFERE +D+YG+ 
Sbjct: 65  DYPGREKRFDVVYNFLSPTLNTRIRLNAQASETTQVPSLIDVFPGADWFERETYDLYGVI 124

Query: 124 FEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLS 183
           F GHPD+RR+LTDYGF+GHPLRKDFP+TGFVE+ YDD  K+VVY PV L QE R +DF+S
Sbjct: 125 FTGHPDMRRLLTDYGFDGHPLRKDFPLTGFVEVRYDDAEKRVVYEPVRLNQEFRKFDFMS 184

Query: 184 PWEGVNSLFAKEDSK 198
           PWEG +     ++  
Sbjct: 185 PWEGADYPLPGDEKA 199


>gi|83953912|ref|ZP_00962633.1| NADH-quinone oxidoreductase, C subunit [Sulfitobacter sp. NAS-14.1]
 gi|83841857|gb|EAP81026.1| NADH-quinone oxidoreductase, C subunit [Sulfitobacter sp. NAS-14.1]
          Length = 201

 Score =  252 bits (644), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 95/199 (47%), Positives = 134/199 (67%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  ++ +LG YI       +     +  EL++DV   +L  L  F++ D  C F +++D+
Sbjct: 1   MSEQLNELGAYIEAKRPDCILGWDIAFDELNMDVTQANLPGLVEFIKSDATCRFSSLVDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
             VD+  R+ RFDVVYHFLS   N+R+R+++   E   VPSIV I+P A+WFEREV+DM+
Sbjct: 61  TAVDYPGRAKRFDVVYHFLSMYQNQRIRLRVVAREEDMVPSIVDIHPSANWFEREVFDMF 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRR+LTDYGF G+PLRKDFP TG+ E+ YD+  K+VVY PV L+QE+R +D
Sbjct: 121 GIIFAGHPDLRRLLTDYGFRGYPLRKDFPTTGYTEVRYDETEKRVVYEPVSLVQEYRQFD 180

Query: 181 FLSPWEGVNSLFAKEDSKD 199
           F+SPWEG   +   ++  +
Sbjct: 181 FMSPWEGAEYILPGDEKPE 199


>gi|83942673|ref|ZP_00955134.1| NADH-quinone oxidoreductase, C subunit [Sulfitobacter sp. EE-36]
 gi|83846766|gb|EAP84642.1| NADH-quinone oxidoreductase, C subunit [Sulfitobacter sp. EE-36]
          Length = 201

 Score =  252 bits (643), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 96/199 (48%), Positives = 135/199 (67%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  ++ +LG YI       +     +  EL++DV   +L  L  F++ D  C F +++D+
Sbjct: 1   MSEQLNELGAYIEAKRPDCILGWDIAFDELNMDVTQANLPGLVEFIKSDATCRFSSLVDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
             VD+  R+ RFDVVYHFLS   N+R+R+++A  E   VPSIV I+P A+WFEREV+DM+
Sbjct: 61  TAVDYPGRAKRFDVVYHFLSMYQNQRIRLRVAAREEDMVPSIVDIHPSANWFEREVFDMF 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRR+LTDYGF G+PLRKDFP TG+ E+ YD+  K+VVY PV L+QE+R +D
Sbjct: 121 GIIFAGHPDLRRLLTDYGFRGYPLRKDFPTTGYTEVRYDETEKRVVYEPVSLVQEYRQFD 180

Query: 181 FLSPWEGVNSLFAKEDSKD 199
           F+SPWEG   +   ++  +
Sbjct: 181 FMSPWEGGEYILPGDEKPE 199


>gi|49475656|ref|YP_033697.1| NADH dehydrogenase subunit C [Bartonella henselae str. Houston-1]
 gi|81827709|sp|Q6G390|NUOC_BARHE RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|49238463|emb|CAF27691.1| NADH dehydrogenase I, C subunit [Bartonella henselae str.
           Houston-1]
          Length = 202

 Score =  252 bits (643), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 103/201 (51%), Positives = 132/201 (65%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   +E+L  Y+ +     +   V + GEL++      +  +  F+RDD  C F+NI D+
Sbjct: 1   MSESLEELAAYLKSKLGDKLEETVLAFGELTIVSRLDAITDVLIFVRDDSRCQFINITDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
            GVD+  R  RFDV Y  LSP++N RLRVK+   E   V S   IYPGA+W+ERE +DMY
Sbjct: 61  SGVDYPCRDKRFDVSYQLLSPRHNLRLRVKVRTDENIPVASACSIYPGAEWYERETYDMY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGFEGHPLRKDFPVTGFVE  YD++ K+V+Y PV L QE R++D
Sbjct: 121 GILFSGHPDLRRILTDYGFEGHPLRKDFPVTGFVECRYDNEAKRVIYEPVVLRQEMRNFD 180

Query: 181 FLSPWEGVNSLFAKEDSKDDM 201
           FLSPWEG   +   ++   D 
Sbjct: 181 FLSPWEGAQYILPCDEKTKDK 201


>gi|27380028|ref|NP_771557.1| NADH dehydrogenase subunit C [Bradyrhizobium japonicum USDA 110]
 gi|27353182|dbj|BAC50182.1| NADH ubiquinone oxidoreductase chain C [Bradyrhizobium japonicum
           USDA 110]
          Length = 203

 Score =  251 bits (642), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 104/195 (53%), Positives = 138/195 (70%)

Query: 4   KIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGV 63
           K++ LG  IV++  G+      +  +L++DV+   +V +  +LRDDP+C FVN  D+  V
Sbjct: 5   KLDALGQTIVSALPGAATGHSVAFNQLTVDVEAARIVEVVKYLRDDPNCRFVNFTDITAV 64

Query: 64  DFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIF 123
           D+ SR  RFDVVYH +SP  N R+R+K    E   VPS++ ++PGADWFERE +D+YG+F
Sbjct: 65  DYPSREKRFDVVYHLMSPTLNTRIRLKAQADETTQVPSLIDVFPGADWFEREAYDLYGVF 124

Query: 124 FEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLS 183
           F GHPD+RRILTDYGFEGHPLRKDFP TGFVE+ YDD+ K+VVY PV L QE R +DFLS
Sbjct: 125 FVGHPDMRRILTDYGFEGHPLRKDFPTTGFVEVRYDDQEKRVVYEPVRLNQEFRKFDFLS 184

Query: 184 PWEGVNSLFAKEDSK 198
           PWEG +     ++  
Sbjct: 185 PWEGADYPLPGDEKA 199


>gi|144899467|emb|CAM76331.1| NADH dehydrogenase I, C subunit [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 200

 Score =  251 bits (641), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 104/199 (52%), Positives = 140/199 (70%), Gaps = 3/199 (1%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSV-GELSLDVDCGDLVSLCSFLRDDPHCCFVNIID 59
           M + ++DLGDYI  +    V     +  GEL++ V    +  + +FLRDD  C F  ++D
Sbjct: 1   MTQVLKDLGDYIAAALPNDVLSTEVNRVGELTVLVRTPSIAKVLTFLRDDSGCLFKQLVD 60

Query: 60  LCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDM 119
           +CGVD+  R +RFDVVYH LS K+N+R+RVK+A  E   VPS+VG++  A WFERE WDM
Sbjct: 61  VCGVDWPGREDRFDVVYHLLSLKHNQRVRVKVATDEETPVPSVVGVFSSAGWFERETWDM 120

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDY 179
           +G+ F  HPDLRR+LTDYGFEGHPLRKDFP+TG VEL YDD++K+ VY PV+L+Q+ R++
Sbjct: 121 FGVIFSDHPDLRRLLTDYGFEGHPLRKDFPLTGHVELRYDDELKRCVYEPVKLVQDFRNF 180

Query: 180 DFLSPWEGVNSLFAKEDSK 198
           DFLSPWEG       ++  
Sbjct: 181 DFLSPWEGQG--LPGDEKA 197


>gi|299135031|ref|ZP_07028222.1| NADH (or F420H2) dehydrogenase, subunit C [Afipia sp. 1NLS2]
 gi|298590008|gb|EFI50212.1| NADH (or F420H2) dehydrogenase, subunit C [Afipia sp. 1NLS2]
          Length = 215

 Score =  251 bits (641), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 107/200 (53%), Positives = 140/200 (70%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
            +++ LG+ IV +  G+       VGEL++ VD   ++ +  FL+ DP C FVNIID+  
Sbjct: 4   ARLDALGETIVGALPGAALGHAVEVGELNISVDLSRIIEVARFLKTDPRCRFVNIIDVTA 63

Query: 63  VDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGI 122
           VD+  R NRFDVVYHF+SP  N RLR++    E   VPSI+ ++PG DWFERE +D+YG+
Sbjct: 64  VDYPGRENRFDVVYHFMSPTLNARLRLRGQANETTQVPSIISVFPGCDWFERETYDLYGV 123

Query: 123 FFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFL 182
            F GHPD+RR+LTDYGFEGHPLRKDFP TGFVE+ YDD+ K+VVY PV L QE R +DFL
Sbjct: 124 IFTGHPDMRRLLTDYGFEGHPLRKDFPTTGFVEVRYDDQEKRVVYDPVRLNQEFRKFDFL 183

Query: 183 SPWEGVNSLFAKEDSKDDMS 202
           SPWEG + L   ++    +S
Sbjct: 184 SPWEGADYLLPGDEKASAVS 203


>gi|154253663|ref|YP_001414487.1| NADH dehydrogenase subunit C [Parvibaculum lavamentivorans DS-1]
 gi|218534317|sp|A7HY47|NUOC_PARL1 RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|154157613|gb|ABS64830.1| NADH (or F420H2) dehydrogenase, subunit C [Parvibaculum
           lavamentivorans DS-1]
          Length = 200

 Score =  250 bits (639), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 97/199 (48%), Positives = 135/199 (67%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + +LG++I+ +   SV     + GEL++      +  +  FLRDDP C F  ++D+
Sbjct: 1   MDESLAELGEHILGTLEESVLGFHVAFGELNVLAQAQSIARVLKFLRDDPACRFGTLLDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
             VD+  R  RFDVVYH LS   N+R+RV +   E  +VPS+V +YP A+W+ERE +DMY
Sbjct: 61  TAVDYPQRPERFDVVYHLLSMHQNQRIRVTVRTNEETAVPSVVAVYPSANWYERETFDMY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           G+ F  HPDLRRILTDYGF G+PLRKDFP+TG+VE+ YDD  K+VVY PV+L+QE R++D
Sbjct: 121 GVLFSDHPDLRRILTDYGFNGYPLRKDFPLTGYVEVRYDDDEKRVVYEPVKLVQEFRNFD 180

Query: 181 FLSPWEGVNSLFAKEDSKD 199
           F+SPWEG   L   ++  +
Sbjct: 181 FMSPWEGAEYLLPGDEKAE 199


>gi|115524528|ref|YP_781439.1| NADH dehydrogenase subunit C [Rhodopseudomonas palustris BisA53]
 gi|115518475|gb|ABJ06459.1| NADH (or F420H2) dehydrogenase, subunit C [Rhodopseudomonas
           palustris BisA53]
          Length = 201

 Score =  250 bits (639), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 104/201 (51%), Positives = 139/201 (69%), Gaps = 1/201 (0%)

Query: 1   MVRK-IEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIID 59
           M    ++ LG  IV + SG+V     + GEL++ +    +V +  FLRDDP C F+N ID
Sbjct: 1   MDDNGLDALGQMIVGALSGAVIGHSIAFGELTVTIYAEKVVEVARFLRDDPRCRFINPID 60

Query: 60  LCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDM 119
           +  VD+  R NRFDVVYH LSP  N R+R++    E   VPS++G++PG DWFERE +D+
Sbjct: 61  VTAVDYPGRENRFDVVYHLLSPTLNARIRLRAEANETTQVPSLIGVFPGVDWFEREAYDL 120

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDY 179
           YG+ F GHPD+RRILTDYGF+GHPLRKDFP++GFVE+ YDD  K+VVY PV L QE R +
Sbjct: 121 YGVIFTGHPDMRRILTDYGFDGHPLRKDFPLSGFVEVRYDDDEKRVVYEPVRLNQEFRKF 180

Query: 180 DFLSPWEGVNSLFAKEDSKDD 200
           DFLSPWEG +     ++ + +
Sbjct: 181 DFLSPWEGADYPLPGDEKRSE 201


>gi|85717028|ref|ZP_01047990.1| NADH dehydrogenase subunit C [Nitrobacter sp. Nb-311A]
 gi|85696152|gb|EAQ34048.1| NADH dehydrogenase subunit C [Nitrobacter sp. Nb-311A]
          Length = 206

 Score =  250 bits (639), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 101/201 (50%), Positives = 139/201 (69%), Gaps = 1/201 (0%)

Query: 1   MVR-KIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIID 59
           M   +++ LG  IV +  G+      S G+L++ V+   +V +  F+RDD  C F+NIID
Sbjct: 1   MDESRLDALGQMIVATLPGAATGHSMSFGQLTVTVEAAKIVEVARFIRDDQRCRFINIID 60

Query: 60  LCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDM 119
           +  VD+  R  RFDV+YHFLSP  N R+R++   +E   VPS++ ++PGADWFERE +D+
Sbjct: 61  VTAVDYPGREKRFDVIYHFLSPALNARIRLRAYASETTQVPSLIDVFPGADWFEREAYDL 120

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDY 179
           YG+ F GHPD+RR+LTDYGF+GHPLRKDFP+TGFVE+ YDD  K+VVY PV L QE R +
Sbjct: 121 YGVIFTGHPDMRRLLTDYGFDGHPLRKDFPLTGFVEVRYDDAEKRVVYEPVRLNQEFRKF 180

Query: 180 DFLSPWEGVNSLFAKEDSKDD 200
           DF+SPWEG +     ++   D
Sbjct: 181 DFMSPWEGADYPLPGDEKAMD 201


>gi|86749692|ref|YP_486188.1| NADH dehydrogenase subunit C [Rhodopseudomonas palustris HaA2]
 gi|86572720|gb|ABD07277.1| NADH (or F420H2) dehydrogenase, subunit C [Rhodopseudomonas
           palustris HaA2]
          Length = 204

 Score =  250 bits (639), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 105/200 (52%), Positives = 138/200 (69%), Gaps = 2/200 (1%)

Query: 1   MVRK-IEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIID 59
           M    ++ LG  IV +  G+      + G+L++ +D   +V +  FLRDDP C FVNI+D
Sbjct: 1   MDDNGLDTLGQTIVGALPGAAIGHSIAYGQLTVTIDAAKVVEVARFLRDDPRCRFVNIVD 60

Query: 60  LCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDM 119
           +  VD+  R  RFD+VYHFLSP  N R+R++  V E   VPSI+ ++PG DWFEREV+D+
Sbjct: 61  VTAVDYPGRVPRFDLVYHFLSPALNARIRLRAEVGETTLVPSIIDVFPGTDWFEREVYDL 120

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDY 179
           YGI   GHPD+RRILTDYGF+GHPLRKDFP+TGFVE+ YDD  K+VVY PV L QE R +
Sbjct: 121 YGIVITGHPDMRRILTDYGFDGHPLRKDFPLTGFVEVRYDDDQKRVVYEPVRLNQEFRKF 180

Query: 180 DFLSPWEGVNS-LFAKEDSK 198
           DFLSPWEG +  +   ++  
Sbjct: 181 DFLSPWEGADYPVLPGDEKA 200


>gi|146341113|ref|YP_001206161.1| NADH dehydrogenase subunit C [Bradyrhizobium sp. ORS278]
 gi|146193919|emb|CAL77936.1| NADH-quinone oxidoreductase chain C (NADH dehydrogenase I, chain C)
           (NDH-1, chain C) [Bradyrhizobium sp. ORS278]
          Length = 201

 Score =  250 bits (638), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 100/195 (51%), Positives = 135/195 (69%)

Query: 4   KIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGV 63
           +++ LG  IV++  G+      +  +L++ VD   +V +   LRDDP C F+N  D+  V
Sbjct: 5   RLDALGQTIVSALPGAALGHSVAFNQLTVTVDPARIVEVVKHLRDDPGCRFINFTDITAV 64

Query: 64  DFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIF 123
           D+  R+ RF+VVYHFLSP  N R+R+K    E   VPSI+ ++PGADWFERE +D+YG+ 
Sbjct: 65  DYPERAKRFEVVYHFLSPTLNTRIRLKAEADEMTQVPSIIDVFPGADWFEREAYDLYGVI 124

Query: 124 FEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLS 183
           F GHPD+RRILTDYGF+GHPLRKDFP TGFVE+ YDD+ K+V+Y PV L QE R +DFLS
Sbjct: 125 FVGHPDMRRILTDYGFDGHPLRKDFPTTGFVEVRYDDQEKRVIYEPVRLNQEFRRFDFLS 184

Query: 184 PWEGVNSLFAKEDSK 198
           PWEG +     ++  
Sbjct: 185 PWEGADYPLPGDEKA 199


>gi|148255913|ref|YP_001240498.1| NADH dehydrogenase subunit C [Bradyrhizobium sp. BTAi1]
 gi|146408086|gb|ABQ36592.1| NADH dehydrogenase subunit C [Bradyrhizobium sp. BTAi1]
          Length = 201

 Score =  249 bits (637), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 100/195 (51%), Positives = 138/195 (70%)

Query: 4   KIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGV 63
           +++ LG  IV++  G+      +  +L++D++   +V +  +LRDDP C FVNI D+  V
Sbjct: 5   RLDALGQTIVSALPGAALGHSVAFNQLTVDIEPTRIVEVAKYLRDDPACRFVNITDITAV 64

Query: 64  DFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIF 123
           D+  R+ RFDVVYHFLSP  N R+R+K    E   VPS++ ++PGADWFERE +D+YG+ 
Sbjct: 65  DYPERAKRFDVVYHFLSPTLNARVRLKGQADEATQVPSLIDVFPGADWFEREAYDLYGVI 124

Query: 124 FEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLS 183
           F GHPD+RR+LTDYGF+GHPLRKDFP TGFVE+ YDD+ K+V+Y PV L QE R +DFLS
Sbjct: 125 FVGHPDMRRLLTDYGFDGHPLRKDFPTTGFVEVRYDDQEKRVIYEPVRLNQEFRKFDFLS 184

Query: 184 PWEGVNSLFAKEDSK 198
           PWEG +     ++  
Sbjct: 185 PWEGADYPLPGDEKA 199


>gi|114799741|ref|YP_760448.1| NADH dehydrogenase subunit C [Hyphomonas neptunium ATCC 15444]
 gi|123128796|sp|Q0C1E5|NUOC_HYPNA RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|114739915|gb|ABI78040.1| NADH-quinone oxidoreductase, C subunit [Hyphomonas neptunium ATCC
           15444]
          Length = 202

 Score =  249 bits (637), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 103/199 (51%), Positives = 136/199 (68%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
            + + DL  +I      +VR     VGEL+L  +   +V L  FLRDD  C F   ID+C
Sbjct: 3   TQALSDLAAHIEGRMPDAVRSWQIHVGELTLLAERDHIVPLLRFLRDDQQCNFETFIDVC 62

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
           GVD+  RS RF+VVYH LS + N R+RV+I   E  +VPS+V ++P A+WFERE +DMYG
Sbjct: 63  GVDYPERSERFEVVYHLLSMRMNHRIRVRIRTDEETAVPSVVSLWPAANWFEREAFDMYG 122

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           I F  HPDLRRILTDYGFEG PLRKDFP+TG  E+ YDD  K+V+Y PV+L QE+R++DF
Sbjct: 123 IQFADHPDLRRILTDYGFEGWPLRKDFPLTGHYEVRYDDLEKRVIYEPVKLAQEYRNFDF 182

Query: 182 LSPWEGVNSLFAKEDSKDD 200
           LSPWEG+ ++   ++   +
Sbjct: 183 LSPWEGMTTVIPGDEKAKE 201


>gi|209885053|ref|YP_002288910.1| NADH-quinone oxidoreductase subunit c [Oligotropha carboxidovorans
           OM5]
 gi|209873249|gb|ACI93045.1| NADH-quinone oxidoreductase subunit c [Oligotropha carboxidovorans
           OM5]
          Length = 216

 Score =  249 bits (635), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 110/200 (55%), Positives = 140/200 (70%), Gaps = 2/200 (1%)

Query: 1   MVR--KIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNII 58
           M+   +++ LG  IV +  G+       VGEL++ VD   +V +  FL+ DP C FVNII
Sbjct: 1   MMDDARLDALGQTIVGALPGAALGHAVEVGELNIAVDLERIVEVVRFLKTDPRCRFVNII 60

Query: 59  DLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWD 118
           D+  VD+  R NRFDVVYHF+SP  N RLR++    E   VPSI+ ++PGADWFERE +D
Sbjct: 61  DVTAVDYPGRENRFDVVYHFMSPTLNARLRLRGQANEDTQVPSIIRVFPGADWFERETYD 120

Query: 119 MYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRD 178
           +YG+ F GHPD+RRILTDYGFEGHPLRKDFP+TGFVE+ YDD+ K+VVY PV L QE R 
Sbjct: 121 LYGVIFTGHPDMRRILTDYGFEGHPLRKDFPLTGFVEVRYDDQEKRVVYDPVRLNQEFRQ 180

Query: 179 YDFLSPWEGVNSLFAKEDSK 198
           +DFLSPWEG   L   ++  
Sbjct: 181 FDFLSPWEGAEYLLPGDEKA 200


>gi|300023454|ref|YP_003756065.1| NADH (or F420H2) dehydrogenase, subunit C [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299525275|gb|ADJ23744.1| NADH (or F420H2) dehydrogenase, subunit C [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 199

 Score =  248 bits (634), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 99/195 (50%), Positives = 138/195 (70%)

Query: 4   KIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGV 63
           +I +L  ++   F   +  +  +  E S+ V    +V + + LRDDP C F  +ID+CGV
Sbjct: 2   EIANLITHVGTLFGADILASSTAFDEASISVPRDRIVEVLTKLRDDPKCQFEVLIDICGV 61

Query: 64  DFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIF 123
           D+  R+ RF+VVYH LSP+ N+RLR+KI+  E  +V S+  ++P A+W+ERE +D+YGI 
Sbjct: 62  DYPERAERFEVVYHLLSPRLNQRLRIKISTDETTAVQSVNDVFPAANWYEREAYDLYGIR 121

Query: 124 FEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLS 183
           F GHPDLRRILTDYGF+GHPLRKDFP+TG+VE+ YDD+ K+VVY PV+L QE RD+DF S
Sbjct: 122 FIGHPDLRRILTDYGFQGHPLRKDFPLTGYVEVRYDDEKKRVVYEPVKLTQEFRDFDFES 181

Query: 184 PWEGVNSLFAKEDSK 198
           PWEG N +   ++  
Sbjct: 182 PWEGPNYIIPGDEKA 196


>gi|209964548|ref|YP_002297463.1| NADH dehydrogenase subunit C [Rhodospirillum centenum SW]
 gi|209958014|gb|ACI98650.1| NADH-quinone oxidoreductase chain C [Rhodospirillum centenum SW]
          Length = 236

 Score =  248 bits (634), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 103/201 (51%), Positives = 139/201 (69%), Gaps = 3/201 (1%)

Query: 1   MVRK-IEDLGDYIVNSFSGSVRFAVNSV-GELSLDVDCGDLVSLCSFLRDDPHCCFVNII 58
           M  + +++LGDYI ++       A  +  GEL + V+   +V +  FLRDD  C F  ++
Sbjct: 1   MSDQALQELGDYITSALGKDALSAEVNRVGELVVRVERRSIVRVLQFLRDDSTCLFQQLM 60

Query: 59  DLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWD 118
           +LCGVD+  RS RF+VVY  LS K+N+R+RV +   E   VPS+ G++P A+WFERE WD
Sbjct: 61  ELCGVDYPQRSERFEVVYCLLSLKHNQRVRVVVTTDEDTPVPSVTGVFPVANWFEREAWD 120

Query: 119 MYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRD 178
           +YGIFF  HPDLRRILTDYGFEGHPLRKDFP+TG+VEL YD   ++VVY PV+L Q+ R 
Sbjct: 121 LYGIFFSDHPDLRRILTDYGFEGHPLRKDFPLTGYVELRYDPDQRRVVYEPVKLTQDFRS 180

Query: 179 YDFLSPWEGVNSL-FAKEDSK 198
           +DFLSPWEG+  +    ++  
Sbjct: 181 FDFLSPWEGMTEVQLPGDEKA 201


>gi|110633378|ref|YP_673586.1| NADH dehydrogenase subunit C [Mesorhizobium sp. BNC1]
 gi|123353796|sp|Q11JK4|NUOC_MESSB RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|110284362|gb|ABG62421.1| NADH dehydrogenase subunit C [Chelativorans sp. BNC1]
          Length = 200

 Score =  247 bits (632), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 100/199 (50%), Positives = 143/199 (71%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + DL  YI     G V+  + +  EL++ V+ GD+V + +FL+ D  C F   +D+
Sbjct: 1   MNEALRDLAGYIKEKLDGRVQDWMVAYDELTIFVEPGDIVDVLTFLKSDVQCQFFAFVDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
            GVD+ +R  RF+VVYH LSP+ N+R+RVK++  E   +PS++ ++P A+W+ERE++D+Y
Sbjct: 61  SGVDYPARERRFEVVYHLLSPRQNQRIRVKVSTDEETPIPSVIEVFPAANWYEREIYDLY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           G+ F  HPDLRRILTDYGFEGHPLRKDFP+TGFVE+HYDD+ K+VVY+PV L QE R++D
Sbjct: 121 GVLFTEHPDLRRILTDYGFEGHPLRKDFPLTGFVEVHYDDEAKRVVYQPVNLRQEFRNFD 180

Query: 181 FLSPWEGVNSLFAKEDSKD 199
           FLSPWEG + +   ++   
Sbjct: 181 FLSPWEGTDYVLPGDEKAK 199


>gi|304322206|ref|YP_003855849.1| NADH dehydrogenase subunit C [Parvularcula bermudensis HTCC2503]
 gi|303301108|gb|ADM10707.1| NADH dehydrogenase subunit C [Parvularcula bermudensis HTCC2503]
          Length = 200

 Score =  247 bits (632), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 103/198 (52%), Positives = 136/198 (68%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +  + +L D+I      ++     + GELS+ V  G +V    FLRDDP C FV +IDLC
Sbjct: 3   MDDLIELKDHIAAWGGEAIIAQEVAFGELSVTVAAGKIVDTLKFLRDDPICRFVQLIDLC 62

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
           GVD+  R  RF+VVYH LS   N R+R+K+ V +  S PS+  I+P ADW+ERE +DMYG
Sbjct: 63  GVDYPERRKRFEVVYHLLSLHNNTRIRIKVPVGQSDSCPSVRSIFPNADWYEREAFDMYG 122

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           I F+GHPDLRRILTDYGFEG+PLRKDFP+TGF E+ +DD+  +VVY PVEL QE R++D 
Sbjct: 123 IVFDGHPDLRRILTDYGFEGYPLRKDFPLTGFTEVRWDDEQSRVVYEPVELAQEFRNFDT 182

Query: 182 LSPWEGVNSLFAKEDSKD 199
           LSPW G + +   ++  D
Sbjct: 183 LSPWRGSDYVLPGDEKAD 200


>gi|16126197|ref|NP_420761.1| NADH dehydrogenase subunit C [Caulobacter crescentus CB15]
 gi|221234968|ref|YP_002517404.1| NADH dehydrogenase subunit C [Caulobacter crescentus NA1000]
 gi|81782638|sp|Q9A6X2|NUOC_CAUCR RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|13423413|gb|AAK23929.1| NADH dehydrogenase I, C subunit [Caulobacter crescentus CB15]
 gi|220964140|gb|ACL95496.1| NADH-quinone oxidoreductase chain C [Caulobacter crescentus NA1000]
          Length = 197

 Score =  247 bits (630), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 103/198 (52%), Positives = 133/198 (67%), Gaps = 2/198 (1%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   +E LG  IV    G V     + GEL++      ++   +FLRDD  C F  +IDL
Sbjct: 1   MSEALELLGQDIVARAPG-VLGHSVAFGELTIVARAASVIDTLTFLRDDAACRFHQLIDL 59

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
            GVD+  R+ RFDVVYH LS   N R+R+K++  E   VPS+  ++P ADWFERE +DMY
Sbjct: 60  TGVDYPERAARFDVVYHLLSLVKNHRIRLKVSTDEDTPVPSVTPVFPVADWFEREAFDMY 119

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GIFF+GHPDLRRILTDYGF GHPLRKDFP+TG+VE+ YDD++K+VVY PV++  E R +D
Sbjct: 120 GIFFDGHPDLRRILTDYGFHGHPLRKDFPMTGYVEVRYDDELKRVVYEPVKIT-EFRAFD 178

Query: 181 FLSPWEGVNSLFAKEDSK 198
           FLSPWEG       ++  
Sbjct: 179 FLSPWEGAKYALPGDEKA 196


>gi|254455280|ref|ZP_05068709.1| NADH dehydrogenase i chain c [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082282|gb|EDZ59708.1| NADH dehydrogenase i chain c [Candidatus Pelagibacter sp. HTCC7211]
          Length = 201

 Score =  246 bits (629), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 83/201 (41%), Positives = 128/201 (63%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +  +EDL   I +  +  +        +L ++ D  DL+ +  F++ +    F  +ID+ 
Sbjct: 1   MINLEDLEKKINSELTTKINSTEIKHNQLYIETDKDDLIDVTLFIKTNQDTKFRQLIDIT 60

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD+   + RF +VY FLS +YN+R+ +  ++ E + +PS+  I+P ++W EREV+DMYG
Sbjct: 61  VVDYPENTQRFKMVYLFLSHEYNQRIILSYSINENEIIPSLTSIFPASNWMEREVFDMYG 120

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           + F+ HPDLRRILTDYGFEGHPLRKDFP+TG  E+ Y +  KKV+  PV+L Q +R++D+
Sbjct: 121 VSFKDHPDLRRILTDYGFEGHPLRKDFPLTGHTEVRYSEDQKKVINEPVKLEQNYRNFDY 180

Query: 182 LSPWEGVNSLFAKEDSKDDMS 202
            SPWEG   +  + DS D  +
Sbjct: 181 ESPWEGTKYIKEELDSNDKKN 201


>gi|90417842|ref|ZP_01225754.1| NADH dehydrogenase I, C subunit [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337514|gb|EAS51165.1| NADH dehydrogenase I, C subunit [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 202

 Score =  246 bits (629), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 105/194 (54%), Positives = 144/194 (74%)

Query: 6   EDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDF 65
           +DL DY+V +   ++   + + GEL+L V   ++V + +FLRDDP   F++++D+CGVD+
Sbjct: 8   KDLTDYVVETLGDTLIETITAFGELTLIVAPAEIVRVLTFLRDDPQTQFISLVDICGVDY 67

Query: 66  LSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFE 125
             R+ RF+VVYH LSP+ N+R+R+K+   E   VPS+ G++ GADWFERE +D YGI F 
Sbjct: 68  PERAERFEVVYHLLSPRQNQRVRIKVRTGEDLPVPSVTGVFAGADWFEREAYDFYGILFT 127

Query: 126 GHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPW 185
           GHPDLRRILTDYGFEG+PLRKDFP+TGFVE+HYD+  K+VVY PVEL QE R++DFLSPW
Sbjct: 128 GHPDLRRILTDYGFEGYPLRKDFPLTGFVEVHYDEAKKQVVYEPVELRQEFRNFDFLSPW 187

Query: 186 EGVNSLFAKEDSKD 199
           EG   +   ++   
Sbjct: 188 EGTEYVLPGDEKAK 201


>gi|295689627|ref|YP_003593320.1| NADH (or F420H2) dehydrogenase subunit C [Caulobacter segnis ATCC
           21756]
 gi|295431530|gb|ADG10702.1| NADH (or F420H2) dehydrogenase, subunit C [Caulobacter segnis ATCC
           21756]
          Length = 213

 Score =  246 bits (629), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 98/198 (49%), Positives = 133/198 (67%), Gaps = 1/198 (0%)

Query: 5   IEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD 64
           +E LG  IV + +G++     + GEL++      ++    FLRD P C F  ++DL  VD
Sbjct: 14  LETLGQAIVANSAGAITAYHVAFGELTVLGPANRVIQALEFLRDHPDCRFHQLVDLTAVD 73

Query: 65  FLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFF 124
           +  R  RFDVVYH LS   N R+R+K+   E  +VPS+  ++  ADWFERE +DMYG+FF
Sbjct: 74  YPQRERRFDVVYHLLSLVKNHRIRLKVQTDEDTAVPSVTPVFAVADWFEREAFDMYGVFF 133

Query: 125 EGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSP 184
           EGHPDLRRILTDYGF GHPLRKDFP+TG+VE+ YDD++K+VVY PV++  E R +DFLSP
Sbjct: 134 EGHPDLRRILTDYGFHGHPLRKDFPMTGYVEVRYDDELKRVVYEPVKIT-EFRAFDFLSP 192

Query: 185 WEGVNSLFAKEDSKDDMS 202
           WEG       ++  +  +
Sbjct: 193 WEGAKYALPGDEKAEKRA 210


>gi|84686429|ref|ZP_01014323.1| NADH dehydrogenase subunit C [Maritimibacter alkaliphilus HTCC2654]
 gi|84665612|gb|EAQ12088.1| NADH dehydrogenase subunit C [Rhodobacterales bacterium HTCC2654]
          Length = 204

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 100/197 (50%), Positives = 129/197 (65%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
             + +LG  I       V     + GEL++ V    L+    FL+ D  C    ++D+  
Sbjct: 4   DALNELGALIEVKQMDVVVGWEVAFGELTVTVRPEALIGFVEFLKTDRGCRLSTLVDITA 63

Query: 63  VDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGI 122
           VD+  R  RFDVVYHFLS   N R+RVK AV E + VPSIV +YP A+WFERE++DM+GI
Sbjct: 64  VDYPEREARFDVVYHFLSMYQNHRIRVKAAVEEREMVPSIVTVYPAANWFEREIFDMFGI 123

Query: 123 FFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFL 182
            F+GHPDLRRILTDYGF GHPLRKDFP TGF E+ YD+  K+VVY PV L+QE+R +DF+
Sbjct: 124 IFKGHPDLRRILTDYGFRGHPLRKDFPTTGFTEVRYDEVEKRVVYEPVSLVQEYRQFDFM 183

Query: 183 SPWEGVNSLFAKEDSKD 199
           SPWEG   +   ++  D
Sbjct: 184 SPWEGAEYVLPGDEKAD 200


>gi|217979051|ref|YP_002363198.1| NADH (or F420H2) dehydrogenase, subunit C [Methylocella silvestris
           BL2]
 gi|217504427|gb|ACK51836.1| NADH (or F420H2) dehydrogenase, subunit C [Methylocella silvestris
           BL2]
          Length = 204

 Score =  246 bits (627), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 104/200 (52%), Positives = 140/200 (70%), Gaps = 1/200 (0%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   ++   + +  +  G V  A  + GEL+L V    LV   +FLRDDP C FV  IDL
Sbjct: 1   MDEDLKQFVETLSAALRGWVEDASLAYGELTLTVRADCLVETVAFLRDDPSCLFVCFIDL 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
             VD+ +R  RFDVV H LSPK+NRR+RVK+   E   V S+ G++P A+WFERE +D++
Sbjct: 61  TAVDYPTREKRFDVVTHLLSPKHNRRIRVKVEADEQTPVASLSGLFPAANWFEREAYDLF 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           G++F GHPDLRR+LTDYGF+GHPLRKDFP+TG+VE+ YDD+ K+V+Y PV LMQE R++D
Sbjct: 121 GVYFSGHPDLRRLLTDYGFDGHPLRKDFPMTGYVEVRYDDEEKRVLYEPVALMQEFRNFD 180

Query: 181 FLSPWEG-VNSLFAKEDSKD 199
           FLSPWEG V+ +   ++   
Sbjct: 181 FLSPWEGAVDYVLPGDEKAK 200


>gi|121602302|ref|YP_989072.1| NADH dehydrogenase subunit C [Bartonella bacilliformis KC583]
 gi|218534252|sp|A1USW9|NUOC_BARBK RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|120614479|gb|ABM45080.1| NADH dehydrogenase (quinone), C subunit [Bartonella bacilliformis
           KC583]
          Length = 205

 Score =  245 bits (626), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 100/198 (50%), Positives = 131/198 (66%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
              + +L  Y+       +  +  + GEL++      ++ +  F+RDD  C F+NIID+ 
Sbjct: 3   TETLVELAAYLKEKLGDKLEESALAFGELTIVSRLDAIIDVLMFIRDDSRCQFINIIDIS 62

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
           GVD+ +R  RFDV Y  LSP  N RLRVK+   E   VPS+  +YPGA+W+ERE +DMYG
Sbjct: 63  GVDYPARDKRFDVSYQLLSPFQNLRLRVKVRTDEDVPVPSVCSVYPGAEWYERETYDMYG 122

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           I F GHPDLRRILTDYGFEGHPLRKDFPVTGFVE  YD++ K+V+Y PV L QE R++DF
Sbjct: 123 ILFSGHPDLRRILTDYGFEGHPLRKDFPVTGFVECRYDNEAKRVIYEPVVLRQEMRNFDF 182

Query: 182 LSPWEGVNSLFAKEDSKD 199
           LSPWEG + +   +    
Sbjct: 183 LSPWEGADYVLPCDKKAK 200


>gi|288958987|ref|YP_003449328.1| NADH dehydrogenase I chain C [Azospirillum sp. B510]
 gi|288911295|dbj|BAI72784.1| NADH dehydrogenase I chain C [Azospirillum sp. B510]
          Length = 209

 Score =  245 bits (626), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 99/200 (49%), Positives = 134/200 (67%), Gaps = 2/200 (1%)

Query: 1   MVRK-IEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIID 59
           M  + +++LGD I     G V      +GEL + V    ++++ + LRDDP   F  + D
Sbjct: 1   MSEQALKELGDVIAAKIGGDVLKVEVRLGELMVTVKRPAILAVLTTLRDDPATRFEQLTD 60

Query: 60  LCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDM 119
           +  VD+  R+ RF+VVY  LS  +NRR+RVK+A  E   VPS V ++  A+WFEREVWD+
Sbjct: 61  ITAVDYPDRAERFEVVYQLLSYSHNRRMRVKLATDEDTPVPSAVSVFSAANWFEREVWDL 120

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDY 179
           +GIFFE HPDLRRILTDYGFEGHP RKDFP+TG+VE  YD+  K+VVY PV L Q+ R +
Sbjct: 121 FGIFFENHPDLRRILTDYGFEGHPFRKDFPLTGYVEARYDEDQKRVVYEPVRLTQDFRAF 180

Query: 180 DFLSPWEGVNSL-FAKEDSK 198
           DFLSPWEG+ ++    ++  
Sbjct: 181 DFLSPWEGMTNVMLPGDEKA 200


>gi|71083584|ref|YP_266303.1| NADH dehydrogenase I subunit C [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|91761995|ref|ZP_01263960.1| NADH Dehydrogenase I Chain C [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|71062697|gb|AAZ21700.1| NADH Dehydrogenase I Chain C [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|91717797|gb|EAS84447.1| NADH Dehydrogenase I Chain C [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 202

 Score =  244 bits (624), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 82/200 (41%), Positives = 131/200 (65%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           ++ + DL   I +  +  ++       +L +++D  DL+ +  F++ + +  F  +ID+ 
Sbjct: 1   MQNLIDLEKKINSELTTKIKKTEIRHEQLYINIDNEDLIDVTLFIKSNENTKFRQLIDIT 60

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD+   + RF VVY FLS ++N+R+ +   ++E + +PS+  IYP A+W EREV+DMYG
Sbjct: 61  VVDYPENAQRFKVVYLFLSHEFNQRIILSYLISENEVIPSLTPIYPAANWMEREVFDMYG 120

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           + F+ HPD+RRILTDYGFEGHPLRKDFP+TG  E+ Y +  KKV+  PV+L Q +R++D+
Sbjct: 121 VKFKDHPDMRRILTDYGFEGHPLRKDFPLTGHTEVRYSEDQKKVISEPVKLEQNYRNFDY 180

Query: 182 LSPWEGVNSLFAKEDSKDDM 201
            SPWEG   +  + D ++D 
Sbjct: 181 ESPWEGTKYIKDQTDLENDK 200


>gi|91977355|ref|YP_570014.1| NADH dehydrogenase subunit C [Rhodopseudomonas palustris BisB5]
 gi|91683811|gb|ABE40113.1| NADH (or F420H2) dehydrogenase, subunit C [Rhodopseudomonas
           palustris BisB5]
          Length = 204

 Score =  244 bits (623), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 103/200 (51%), Positives = 137/200 (68%), Gaps = 2/200 (1%)

Query: 1   MVRK-IEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIID 59
           M    ++ LG  IV +  G+    V +  EL++ +D   +V +  FLRDDP C F+NI+D
Sbjct: 1   MDDNGLDTLGQTIVGALPGAAIGHVVTYSELTVTIDSTKVVDVVRFLRDDPRCRFINIVD 60

Query: 60  LCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDM 119
           +  VD+  R  RFD+VYHFLSP  N R+R++  V E   VPSI+ ++PG DWFEREV+D+
Sbjct: 61  VTAVDYPGRVPRFDLVYHFLSPTLNARIRLRAEVGETTLVPSIISVFPGTDWFEREVYDL 120

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDY 179
           YGI   GHPD+RR+LTDYGF+GHPLRKDFP+TGFVE+ YDD  K+VVY PV L QE R +
Sbjct: 121 YGIIITGHPDMRRLLTDYGFDGHPLRKDFPLTGFVEVRYDDDQKRVVYEPVRLNQEFRKF 180

Query: 180 DFLSPWEGVNS-LFAKEDSK 198
           DF SPWEG +  +   ++  
Sbjct: 181 DFQSPWEGADYPILPGDEKA 200


>gi|170084847|ref|XP_001873647.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164651199|gb|EDR15439.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 273

 Score =  243 bits (621), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 95/198 (47%), Positives = 122/198 (61%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
              +   G YI       V+       EL++      ++ + +FLRD   C F   +D+ 
Sbjct: 62  TEALHTYGSYITQCLPKFVQQFSVLKDELTIYTAPSGIIPVLTFLRDHSQCQFKACMDIS 121

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
           GVDF  R  RF+VVY  LS K   R+RVK    E   VPS V +Y GADW+ERE WD+YG
Sbjct: 122 GVDFPEREKRFEVVYSLLSVKLGGRIRVKTYAGEADPVPSAVEVYRGADWYEREAWDLYG 181

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           IFFEGHPDLRRILTDYGFEGHPLRKDFP+TG+ E+ YD++ K+VVY P++L Q  R+++ 
Sbjct: 182 IFFEGHPDLRRILTDYGFEGHPLRKDFPLTGYTEVRYDEERKRVVYEPLQLTQAFRNFEA 241

Query: 182 LSPWEGVNSLFAKEDSKD 199
           LSPWE V         +D
Sbjct: 242 LSPWEQVGEGTKGRRPED 259


>gi|329850727|ref|ZP_08265572.1| NADH-quinone oxidoreductase subunit C [Asticcacaulis biprosthecum
           C19]
 gi|328841042|gb|EGF90613.1| NADH-quinone oxidoreductase subunit C [Asticcacaulis biprosthecum
           C19]
          Length = 200

 Score =  243 bits (621), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 99/200 (49%), Positives = 133/200 (66%), Gaps = 2/200 (1%)

Query: 1   MV-RKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIID 59
           M   K++ L +     F  ++     + GEL+L V    +V + S L+ +P   F  +ID
Sbjct: 1   MSNEKLQTLAERAQAEFKEAILETKFAFGELTLTVSRERIVEILSKLKQEP-YRFHQLID 59

Query: 60  LCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDM 119
           LCG D+  R+ RFDVVYH LS  +N RLRVK+   E   VPS+  +YP ADW+ERE +DM
Sbjct: 60  LCGADYPKRAERFDVVYHLLSLNHNVRLRVKVTTDEIVPVPSVRSVYPNADWYEREAFDM 119

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDY 179
           YG+ F GHPDLRR+LTDYGF G+PLRKDFP+TG VE+ YD++ K+VVY PV+L QE+R +
Sbjct: 120 YGMLFSGHPDLRRLLTDYGFSGYPLRKDFPMTGHVEVRYDEEQKRVVYEPVKLTQEYRKF 179

Query: 180 DFLSPWEGVNSLFAKEDSKD 199
           DFLSPWEG + +   +D   
Sbjct: 180 DFLSPWEGASYVLPGDDKAK 199


>gi|167646796|ref|YP_001684459.1| NADH dehydrogenase subunit C [Caulobacter sp. K31]
 gi|218534261|sp|B0SZ50|NUOC_CAUSK RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|167349226|gb|ABZ71961.1| NADH (or F420H2) dehydrogenase, subunit C [Caulobacter sp. K31]
          Length = 214

 Score =  243 bits (620), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 100/198 (50%), Positives = 135/198 (68%), Gaps = 1/198 (0%)

Query: 5   IEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD 64
           +E LG  IV + +G++     + GEL+L      +V   ++LRD P   F  ++DL GVD
Sbjct: 15  LEALGQAIVANSAGAITAWSVAFGELNLLGPANRIVQALTYLRDHPDYRFHQLVDLTGVD 74

Query: 65  FLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFF 124
           +  R  RFDVVYH LS   N R+R+K+   E  +VPS+  ++P ADWFERE +DMYGIFF
Sbjct: 75  YPERERRFDVVYHLLSLIKNHRVRLKVQTDEDTAVPSVTPVFPVADWFEREAFDMYGIFF 134

Query: 125 EGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSP 184
           +GHPDLRRILTDYGF GHPLRKDFP+TG+VE+ YDD++K+VVY PV++  E R +DFLSP
Sbjct: 135 DGHPDLRRILTDYGFHGHPLRKDFPMTGYVEVRYDDELKRVVYEPVKIT-EFRAFDFLSP 193

Query: 185 WEGVNSLFAKEDSKDDMS 202
           WEG       ++  +  +
Sbjct: 194 WEGAKYALPGDEKAEKRA 211


>gi|49474179|ref|YP_032221.1| NADH dehydrogenase subunit C [Bartonella quintana str. Toulouse]
 gi|81827625|sp|Q6FZY9|NUOC_BARQU RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|49239683|emb|CAF26058.1| NADH dehydrogenase I, C subunit [Bartonella quintana str. Toulouse]
          Length = 202

 Score =  243 bits (620), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 99/199 (49%), Positives = 131/199 (65%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + +L  Y+ N     +   + + GEL++      +  +  F+RDD  C F+N+ D+
Sbjct: 1   MNESLVELSAYLKNKLGDKLEETILAFGELTIVSRLDAITGVLMFVRDDSRCQFINLTDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
            GVD+ SR  RFDV Y  L+P++N RLR+K+   E   V S   IYPGA+W+ERE +DMY
Sbjct: 61  SGVDYPSRDKRFDVSYQLLAPRHNLRLRIKVRTDENTPVASACSIYPGAEWYEREAYDMY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGFEGHPLRKDFPVTGFVE  YD++ K+V+Y PV L QE R++D
Sbjct: 121 GILFSGHPDLRRILTDYGFEGHPLRKDFPVTGFVECRYDNEAKRVIYEPVVLRQEMRNFD 180

Query: 181 FLSPWEGVNSLFAKEDSKD 199
           FLSPWEG   +    +  +
Sbjct: 181 FLSPWEGAQYVLPCNEKAE 199


>gi|71006324|ref|XP_757828.1| hypothetical protein UM01681.1 [Ustilago maydis 521]
 gi|46097031|gb|EAK82264.1| hypothetical protein UM01681.1 [Ustilago maydis 521]
          Length = 389

 Score =  243 bits (620), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 91/186 (48%), Positives = 121/186 (65%)

Query: 5   IEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD 64
           + D G YI +     ++       EL+L V    ++   SFLRD     F   +D+ G D
Sbjct: 182 LHDFGSYITSCLPRFIQQFSVVKDELTLYVAPDAVIPTLSFLRDHTQTQFRACMDISGAD 241

Query: 65  FLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFF 124
           + +RS RF+VVYH LS +YN R+RVK    E   VPS   ++  ADW+ERE+WDMYG+FF
Sbjct: 242 YPTRSQRFEVVYHLLSVQYNARIRVKTYADEVHPVPSATAVFRSADWYEREIWDMYGVFF 301

Query: 125 EGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSP 184
            GHPDLRRILTDYGFEGHPLRKDFP+TG+ E+ YD++ K+VV  P++L Q  R+++  SP
Sbjct: 302 IGHPDLRRILTDYGFEGHPLRKDFPLTGYTEVRYDEEKKRVVSEPLQLTQAFRNFEANSP 361

Query: 185 WEGVNS 190
           WE V  
Sbjct: 362 WEQVGE 367


>gi|299755128|ref|XP_001828448.2| NADH-ubiquinone oxidoreductase kDa subunit [Coprinopsis cinerea
           okayama7#130]
 gi|298411082|gb|EAU93440.2| NADH-ubiquinone oxidoreductase kDa subunit [Coprinopsis cinerea
           okayama7#130]
          Length = 275

 Score =  243 bits (620), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 94/197 (47%), Positives = 125/197 (63%), Gaps = 4/197 (2%)

Query: 5   IEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD 64
           +   G Y+       ++       EL+L +    +V + +FLRD   C F  ++D+ GVD
Sbjct: 68  LHTYGSYLTQCLPKFIQQFSVLKDELTLYIAPSAVVPVLTFLRDHTQCQFKAVMDISGVD 127

Query: 65  FLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFF 124
           F  R  RF+VVYH LS ++  R+RVK    E   VPS V ++ GADW+ERE WDMYGI+F
Sbjct: 128 FPEREKRFEVVYHLLSIRHAGRIRVKTYAGEADPVPSAVEVFRGADWYEREAWDMYGIYF 187

Query: 125 EGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSP 184
           E HPDLRRILTDYGFEGHPLRKDFP+TG+ EL YD++ K+VVY P++L Q  R+++ LSP
Sbjct: 188 ENHPDLRRILTDYGFEGHPLRKDFPLTGYTELRYDEEKKRVVYEPLQLTQAFRNFESLSP 247

Query: 185 WE----GVNSLFAKEDS 197
           WE    G      +E  
Sbjct: 248 WEQIGDGTKGRRPEELK 264


>gi|254294102|ref|YP_003060125.1| NADH dehydrogenase subunit C [Hirschia baltica ATCC 49814]
 gi|254042633|gb|ACT59428.1| NADH (or F420H2) dehydrogenase, subunit C [Hirschia baltica ATCC
           49814]
          Length = 209

 Score =  242 bits (619), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 98/197 (49%), Positives = 135/197 (68%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
             +++L  +I      SV+       EL +      ++SL  FLR D  C F  + DLC 
Sbjct: 9   ETLDELVSHIETEQPHSVKSCAVVNDELVVYAVRDQIMSLMRFLRSDSQCRFETLTDLCA 68

Query: 63  VDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGI 122
           VD+  R+ RF+VVYH LS   N+R+RVK++  E   VPS+V ++P A+W ERE +DMYG+
Sbjct: 69  VDYPERAERFEVVYHMLSMSLNQRIRVKVSTDEESPVPSLVELFPCANWNEREAFDMYGV 128

Query: 123 FFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFL 182
            F GHPDLRRILTDYGFEGHPLRKDFP+TG VE+ YD+  K+VVY+PV+L+QE+R++DF+
Sbjct: 129 LFSGHPDLRRILTDYGFEGHPLRKDFPLTGHVEVRYDEVEKRVVYQPVKLVQEYRNFDFM 188

Query: 183 SPWEGVNSLFAKEDSKD 199
           SPWEG+ S+   ++  D
Sbjct: 189 SPWEGMQSVLPGDEKAD 205


>gi|240850585|ref|YP_002971985.1| NADH dehydrogenase I subunit C [Bartonella grahamii as4aup]
 gi|240267708|gb|ACS51296.1| NADH dehydrogenase I subunit C [Bartonella grahamii as4aup]
          Length = 201

 Score =  242 bits (618), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 101/201 (50%), Positives = 132/201 (65%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M + + +L  Y+ N     +   V + GEL++      ++ +  F+RDD  C F+N+ D+
Sbjct: 1   MDKTLVELAAYLENKLKNKLEETVIAFGELTIVARLDAIIDVLMFVRDDSRCQFINLTDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
            GVD+ SR  RFDV Y  LSP+ N RLRVK+   E   V S   +YPGA+W+ERE +DMY
Sbjct: 61  SGVDYPSRDKRFDVSYQLLSPRENLRLRVKVRTDENTPVASACTVYPGAEWYERETYDMY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGFEG+PLRKDFPVTGFVE  YD++ K+V+Y PV L QE R++D
Sbjct: 121 GILFSGHPDLRRILTDYGFEGYPLRKDFPVTGFVECRYDNEAKRVIYEPVVLRQEMRNFD 180

Query: 181 FLSPWEGVNSLFAKEDSKDDM 201
           FLSPWEG       +   D+ 
Sbjct: 181 FLSPWEGGQYTLPCDGKADEK 201


>gi|319408581|emb|CBI82236.1| NADH dehydrogenase I chain C [Bartonella schoenbuchensis R1]
          Length = 202

 Score =  242 bits (618), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 105/200 (52%), Positives = 136/200 (68%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + +L  Y+ N     +  +V + GEL++      +  +  F+RDD  C FVNI D+
Sbjct: 1   MFESLNELSAYLKNQLGDKLEESVLAFGELTIVSRLDAITDVLMFVRDDSRCQFVNITDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
            GVD+ SR  RFDV Y  LSP++N RLRVK+   E   +PS   +YPGA+W+ERE +DMY
Sbjct: 61  SGVDYPSRDKRFDVSYQLLSPRHNLRLRVKVRTDENVPIPSACSVYPGAEWYERETYDMY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGFEGHPLRKDFPVTGFVE  YD++VK+V+Y PV L QE R++D
Sbjct: 121 GILFSGHPDLRRILTDYGFEGHPLRKDFPVTGFVECRYDNEVKRVIYEPVVLRQEMRNFD 180

Query: 181 FLSPWEGVNSLFAKEDSKDD 200
           FLSPWEG   +   ++  +D
Sbjct: 181 FLSPWEGAEYILPGDEEIND 200


>gi|316933893|ref|YP_004108875.1| NADH (or F420H2) dehydrogenase subunit C [Rhodopseudomonas
           palustris DX-1]
 gi|315601607|gb|ADU44142.1| NADH (or F420H2) dehydrogenase, subunit C [Rhodopseudomonas
           palustris DX-1]
          Length = 204

 Score =  242 bits (617), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 104/204 (50%), Positives = 138/204 (67%), Gaps = 2/204 (0%)

Query: 1   MVRK-IEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIID 59
           M    ++ LG  IV +  G       + G+L+L VD G +V +   LRDDP   F++ ID
Sbjct: 1   MDDNGLDTLGQTIVGALPGIATGHFVAFGQLTLTVDAGKIVEVMRLLRDDPRFRFISFID 60

Query: 60  LCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDM 119
           +  VD+  R++RF++VYH LSPK N R+RVK  V E   VPSI+ ++PGADWFERE +D+
Sbjct: 61  MTAVDYPGRADRFEIVYHLLSPKLNERVRVKAEVGETTLVPSIIDVFPGADWFEREAYDL 120

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDY 179
           YGI   GHPD+RR+LTDYGF+GHPLRKDFP++GFVE+ YDD  K+VVY PV L QE R +
Sbjct: 121 YGIIITGHPDMRRLLTDYGFDGHPLRKDFPLSGFVEVRYDDDQKRVVYEPVRLNQEFRKF 180

Query: 180 DFLSPWEGVNS-LFAKEDSKDDMS 202
           DFLSPWEG +  +   ++     S
Sbjct: 181 DFLSPWEGADYPVLPGDEKAGVKS 204


>gi|39936015|ref|NP_948291.1| NADH dehydrogenase subunit C [Rhodopseudomonas palustris CGA009]
 gi|192291670|ref|YP_001992275.1| NADH dehydrogenase subunit C [Rhodopseudomonas palustris TIE-1]
 gi|81562350|sp|Q6N5M4|NUOC_RHOPA RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|218534314|sp|B3Q7N4|NUOC_RHOPT RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|39649869|emb|CAE28391.1| NADH-ubiquinone dehydrogenase chain C [Rhodopseudomonas palustris
           CGA009]
 gi|192285419|gb|ACF01800.1| NADH (or F420H2) dehydrogenase, subunit C [Rhodopseudomonas
           palustris TIE-1]
          Length = 204

 Score =  241 bits (616), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 104/204 (50%), Positives = 136/204 (66%), Gaps = 2/204 (0%)

Query: 1   MVRK-IEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIID 59
           M    ++ LG  IV +  G         G+L+L VD G +V +   LRDDP   F++ ID
Sbjct: 1   MDDNGLDTLGQTIVGALPGIATGHSVGFGQLTLTVDAGKIVEVMRLLRDDPRFRFISFID 60

Query: 60  LCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDM 119
           +  VD+  R+ RF++VYH LSPK N R+RVK  V E   VPSI+ ++PGADWFERE +D+
Sbjct: 61  MTAVDYPGRAERFEIVYHLLSPKLNERVRVKAEVGETTLVPSIIEVFPGADWFEREAYDL 120

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDY 179
           YGI   GHPD+RR+LTDYGF+GHPLRKDFP+TGFVE+ YDD  K+V+Y PV L QE R +
Sbjct: 121 YGIVITGHPDMRRLLTDYGFDGHPLRKDFPLTGFVEVRYDDDQKRVIYEPVRLNQEFRKF 180

Query: 180 DFLSPWEGVNS-LFAKEDSKDDMS 202
           DFLSPWEG +  +   ++     S
Sbjct: 181 DFLSPWEGADYPVLPGDEKAGVKS 204


>gi|182679351|ref|YP_001833497.1| NADH (or F420H2) dehydrogenase, subunit C [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182635234|gb|ACB96008.1| NADH (or F420H2) dehydrogenase, subunit C [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 212

 Score =  241 bits (614), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 99/196 (50%), Positives = 139/196 (70%), Gaps = 1/196 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
           +++   G+ I  +  G+++ A  + GEL+L V+ G L+   ++LRDDP   +V+ IDL  
Sbjct: 11  QELTRQGEAIGAALPGAIKAATVAFGELTLTVEAGRLIETITYLRDDPSALYVSFIDLTA 70

Query: 63  VDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGI 122
           VD+  R  RFDVV H LSPK+NRR+R+K+   E   VPS+   YP A+WFERE +D +G+
Sbjct: 71  VDYPLRERRFDVVTHLLSPKHNRRIRIKVETDENTPVPSLSSFYPAANWFEREAYDFFGV 130

Query: 123 FFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFL 182
            F GHPDLRR+LTDYGF+GHPLRKDFP+TG+ E+ YDD+ K+VVY PV+L+QE R +DFL
Sbjct: 131 LFSGHPDLRRLLTDYGFDGHPLRKDFPMTGYAEVRYDDEQKRVVYEPVQLVQEFRSFDFL 190

Query: 183 SPWEGV-NSLFAKEDS 197
           SPWEG  + +   ++ 
Sbjct: 191 SPWEGAIDYILPGDEK 206


>gi|119384980|ref|YP_916036.1| NADH dehydrogenase subunit C [Paracoccus denitrificans PD1222]
 gi|409252|gb|AAA03037.1| NADH dehydrogenase [Paracoccus denitrificans]
 gi|119374747|gb|ABL70340.1| NADH dehydrogenase subunit C [Paracoccus denitrificans PD1222]
          Length = 208

 Score =  240 bits (613), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 98/206 (47%), Positives = 136/206 (66%), Gaps = 5/206 (2%)

Query: 1   MVRKIED-----LGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFV 55
           M   + D     L ++I       V     + GEL+++     ++ L  FLR+DP+C F 
Sbjct: 1   MSEALSDEALLELAEHIALRRENDVISTQVAFGELTVNATLSGVIGLIEFLRNDPNCRFS 60

Query: 56  NIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFERE 115
            +ID+  VD  +R  RFDVVYH LS   N+R+RVK+ V E + VPS++G++PGA+W+ERE
Sbjct: 61  TLIDITAVDNPARPARFDVVYHLLSMYQNQRIRVKVQVREDELVPSLIGVFPGANWYERE 120

Query: 116 VWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQE 175
           V+D++GI F GH DLRRILTDYGF GHPLRKDFP TG+VE+ + D  K+VVY PV L+QE
Sbjct: 121 VFDLFGILFSGHSDLRRILTDYGFRGHPLRKDFPTTGYVEVRWSDIEKRVVYEPVNLVQE 180

Query: 176 HRDYDFLSPWEGVNSLFAKEDSKDDM 201
           +R +DFLSPWEG   +   ++   + 
Sbjct: 181 YRQFDFLSPWEGAKYVLPGDEKAPEA 206


>gi|319898884|ref|YP_004158977.1| NADH dehydrogenase I chain C [Bartonella clarridgeiae 73]
 gi|319402848|emb|CBI76399.1| NADH dehydrogenase I chain C [Bartonella clarridgeiae 73]
          Length = 202

 Score =  240 bits (612), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 99/201 (49%), Positives = 132/201 (65%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + +L +Y+ +     +  +V + GEL++      ++ +  F+RDD  C F+NI D+
Sbjct: 1   MNEVLIELSNYLKDKLGDKIEESVFAFGELTIVSRLNAIIDVLMFVRDDSRCQFINITDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
            GVD+ SR  RFDV Y  LSP++N RLR+K+   E   + S   +YPGA+W+ERE +DMY
Sbjct: 61  SGVDYPSREKRFDVSYQLLSPRHNLRLRIKVRTDENTPIASACSVYPGAEWYERETYDMY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGFEGHPLRKDFPVTGFVE  YD++ K+V+Y PV L QE R +D
Sbjct: 121 GILFSGHPDLRRILTDYGFEGHPLRKDFPVTGFVECRYDNEAKRVIYEPVILRQEMRSFD 180

Query: 181 FLSPWEGVNSLFAKEDSKDDM 201
           FLSPWEG   +    +     
Sbjct: 181 FLSPWEGNEYVLPCNEKSGSK 201


>gi|288856261|ref|NP_001165786.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 3,
           mitochondrial [Nasonia vitripennis]
          Length = 264

 Score =  239 bits (610), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 91/200 (45%), Positives = 130/200 (65%), Gaps = 1/200 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNSVG-ELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
            +++D G Y+       V+      G EL + +    ++   SFL+D  +C F N+ D+ 
Sbjct: 59  AQLKDFGQYVAECLPKYVQKVQIEAGDELEICIAPEGIIPTVSFLKDHHNCQFTNLSDIT 118

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  SR  RF++VY+ LS +YN R+RVK    E   V SI  ++  ADW+EREVWDM+G
Sbjct: 119 AVDIPSRPYRFELVYNILSIRYNTRIRVKTYTDELTPVDSIYDVHKAADWYEREVWDMFG 178

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           I+F GHPDLRRILTDYGFEGHP+RKDFP+TG++E+ YDD+ K+VV  P+EL QE+R ++ 
Sbjct: 179 IYFAGHPDLRRILTDYGFEGHPMRKDFPLTGYIEVRYDDEKKRVVAEPLELAQEYRKFEL 238

Query: 182 LSPWEGVNSLFAKEDSKDDM 201
            +PWE   +     +S +D+
Sbjct: 239 SAPWEQFPNFRNASNSAEDV 258


>gi|163868371|ref|YP_001609580.1| NADH dehydrogenase subunit C [Bartonella tribocorum CIP 105476]
 gi|218534256|sp|A9IUQ0|NUOC_BART1 RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|161018027|emb|CAK01585.1| NADH dehydrogenase I chain C [Bartonella tribocorum CIP 105476]
          Length = 203

 Score =  239 bits (609), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 102/201 (50%), Positives = 133/201 (66%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + +L  Y+ N     +   V + GEL++      +  +  F+RDD HC F+N+ D+
Sbjct: 2   MDESLVELATYLKNKLGNKLEETVFAFGELTIVARLDAITDVLMFVRDDSHCQFINLTDI 61

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
            GVD+ SR  RFDV Y  LSP+ N RLRVK+   E   V S   +YPGA+W+ERE +DMY
Sbjct: 62  SGVDYPSRDKRFDVSYQLLSPRENLRLRVKVRTDENTPVASACTVYPGAEWYERETYDMY 121

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGFEG+PLRKDFPVTGFVE  YD++ K+V+Y PV L QE R++D
Sbjct: 122 GILFSGHPDLRRILTDYGFEGYPLRKDFPVTGFVECRYDNEAKRVIYEPVVLRQEMRNFD 181

Query: 181 FLSPWEGVNSLFAKEDSKDDM 201
           FLSPWEG   +   +  +D+ 
Sbjct: 182 FLSPWEGGQYVLPCDGKEDEK 202


>gi|126332740|ref|XP_001370635.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein
           3 [Monodelphis domestica]
          Length = 354

 Score =  239 bits (609), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 87/198 (43%), Positives = 127/198 (64%), Gaps = 1/198 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +++   G+Y+       V+    S   EL + +    ++ + +FLRD  +  F ++ DL 
Sbjct: 146 KQLSAFGEYVAEILPKYVQQVQVSYFNELEICIHPDGVIPVLTFLRDHTNAQFKSLADLG 205

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  +R NRF++VY+ LS ++N R+RVK    E   V S+V ++  A+W+ERE+WDM+G
Sbjct: 206 AVDVPTRQNRFEIVYNLLSLRFNSRIRVKTYADELTPVDSVVSVHKAANWYEREIWDMFG 265

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           ++F  HPDLRRILTDYGFEGHP RKDFP++G+VE+ YDD+VK+VV  PVEL QE R +D 
Sbjct: 266 VYFANHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEVKRVVAEPVELAQEFRKFDL 325

Query: 182 LSPWEGVNSLFAKEDSKD 199
            SPWE   +     +S  
Sbjct: 326 NSPWEAFPAYRQPPESPK 343


>gi|304391400|ref|ZP_07373342.1| NADH-quinone oxidoreductase chain 5 [Ahrensia sp. R2A130]
 gi|303295629|gb|EFL89987.1| NADH-quinone oxidoreductase chain 5 [Ahrensia sp. R2A130]
          Length = 204

 Score =  238 bits (607), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 97/201 (48%), Positives = 131/201 (65%), Gaps = 4/201 (1%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
             + DL  Y+  + S  +  AV +  EL+L     ++ ++  FLRDD    F+  IDL  
Sbjct: 4   ADLPDLKAYLDEALSDKLDGAVIAFNELTLTTTASNIHAVLRFLRDDVQTSFICFIDLAA 63

Query: 63  VDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGI 122
           VD+  R  RF+VVYH LSP+ N R+R+K++      VPSI  I+P ADWFERE +D+YG+
Sbjct: 64  VDYPQRRQRFEVVYHLLSPRQNLRVRIKLSTDAETPVPSINDIFPAADWFEREAYDLYGV 123

Query: 123 FFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFL 182
            F GHPD+RR+LTDYGFEGHPLRKDFP+TGF ++ YDD  K+VVY PV L QE RD+DF 
Sbjct: 124 LFTGHPDMRRLLTDYGFEGHPLRKDFPLTGFTQVRYDDAEKRVVYEPVLLRQEFRDFDFQ 183

Query: 183 SPWEGVNSL----FAKEDSKD 199
           SPWEG + +       ++  +
Sbjct: 184 SPWEGTDYIIPEALPGDEKAN 204


>gi|58268506|ref|XP_571409.1| NADH-ubiquinone oxidoreductase 30.4 kDa subunit [Cryptococcus
           neoformans var. neoformans JEC21]
 gi|134112874|ref|XP_774980.1| hypothetical protein CNBF1440 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50257628|gb|EAL20333.1| hypothetical protein CNBF1440 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57227644|gb|AAW44102.1| NADH-ubiquinone oxidoreductase 30.4 kDa subunit, putative
           [Cryptococcus neoformans var. neoformans JEC21]
          Length = 284

 Score =  237 bits (605), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 94/186 (50%), Positives = 127/186 (68%), Gaps = 1/186 (0%)

Query: 5   IEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD 64
           +   G Y++ S    V+       EL++ +    ++ + +FLRD   C +  I+D+  VD
Sbjct: 74  LHQYGQYLLASLPKYVQQFSVYKDELTIYIPPQAVLPVFTFLRDHTQCQYRQIVDITAVD 133

Query: 65  FLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFF 124
           F ++ NRF+VVYH LS  +  R+RVK    E   VPS+VG++ GA+W+EREVWDMYGIFF
Sbjct: 134 FPTKPNRFEVVYHLLSHAHQSRIRVKTYADEVTPVPSVVGLFNGANWYEREVWDMYGIFF 193

Query: 125 EGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDY-DFLS 183
           EGHPDLRRILTDYGFEG PLRKDFP+TG+ E+ YDD+ K+VVY P++L Q  R++ D  S
Sbjct: 194 EGHPDLRRILTDYGFEGFPLRKDFPLTGYTEVRYDDEKKRVVYEPLQLTQAFRNFNDAAS 253

Query: 184 PWEGVN 189
           PWE V 
Sbjct: 254 PWEQVG 259


>gi|212531473|ref|XP_002145893.1| NADH-ubiquinone oxidoreductase 304 kDa subunit precursor
           [Penicillium marneffei ATCC 18224]
 gi|210071257|gb|EEA25346.1| NADH-ubiquinone oxidoreductase 304 kDa subunit precursor
           [Penicillium marneffei ATCC 18224]
          Length = 306

 Score =  236 bits (603), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 82/189 (43%), Positives = 122/189 (64%), Gaps = 1/189 (0%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
              +   G YI++     V+       EL++ V    L+ + +FL+      +  I D+ 
Sbjct: 72  ADAMHKYGQYIMSCLPKYVQQFSVWKDELTVYVPPSGLIPVMTFLKYHTAAEYTQISDIT 131

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD+ +R  RF+VVY+ LS ++N R+RVK    E + VPS+  ++ GA W+EREV+DM+G
Sbjct: 132 AVDYPTRDQRFEVVYNMLSVRHNSRIRVKTYCDEAQPVPSVTSLFDGALWYEREVYDMFG 191

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD- 180
           +FF GHPDLRR+LTDYGF+GHPLRKDFP+TG+ E+ YD++ K++VY P+EL Q  R+++ 
Sbjct: 192 VFFTGHPDLRRMLTDYGFDGHPLRKDFPLTGYTEIRYDEEKKRIVYEPLELTQAFRNFEG 251

Query: 181 FLSPWEGVN 189
             S WE V 
Sbjct: 252 GTSSWEQVG 260


>gi|255932309|ref|XP_002557711.1| Pc12g08820 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211582330|emb|CAP80509.1| Pc12g08820 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 289

 Score =  236 bits (603), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 85/190 (44%), Positives = 123/190 (64%), Gaps = 1/190 (0%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   +   G Y+++     ++       EL++      +V + SFL++     F  I D+
Sbjct: 75  MADSLHAYGQYVMSCLPKYIQQFTVWKDELTVYTAPAGVVPVMSFLKNHTAAEFTQISDI 134

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
            GVDF +R  RF+VVY+ LS ++N R+RVK    E   VPS+ G++ GA W+EREV+DM+
Sbjct: 135 TGVDFPTRDQRFEVVYNLLSVRHNSRIRVKTYADEATPVPSVTGLFEGALWYEREVYDMF 194

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           G+FF GHPDLRRI+TDYGF+GHPLRKDFP+TG+ EL YD++ K++V  P+EL Q  R+++
Sbjct: 195 GVFFSGHPDLRRIMTDYGFDGHPLRKDFPLTGYTELRYDEEKKRIVIEPLELTQAFRNFE 254

Query: 181 FLS-PWEGVN 189
             S  WE V 
Sbjct: 255 SGSTAWEPVG 264


>gi|321259926|ref|XP_003194683.1| NADH-ubiquinone oxidoreductase mitochondrial precursor
           [Cryptococcus gattii WM276]
 gi|317461155|gb|ADV22896.1| NADH-ubiquinone oxidoreductase mitochondrial precursor, putative
           [Cryptococcus gattii WM276]
          Length = 286

 Score =  236 bits (602), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 96/188 (51%), Positives = 130/188 (69%), Gaps = 1/188 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
             + + G YI+NS    V+       EL+L +    ++ + +FLRD   C +  ++D+  
Sbjct: 74  TALHEYGQYILNSLPRYVQQFSVYKDELTLYIPPQAVIPVFTFLRDHTQCQYRQVVDITA 133

Query: 63  VDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGI 122
           VDF ++ +RF+VVYH LS  +  R+RVK    E  +VPS+VG++ GA+WFEREVWDMYGI
Sbjct: 134 VDFPTKPSRFEVVYHLLSHAHQSRIRVKTYADEVTAVPSVVGLFNGANWFEREVWDMYGI 193

Query: 123 FFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDY-DF 181
           FFEGHPDLRRILTDYGFEG PLRKDFP+TG+ E+ YDD+ K+VVY P++L Q  R++ D 
Sbjct: 194 FFEGHPDLRRILTDYGFEGFPLRKDFPLTGYTEVRYDDEKKRVVYEPLQLTQAFRNFNDA 253

Query: 182 LSPWEGVN 189
            SPWE V 
Sbjct: 254 ASPWEQVG 261


>gi|114707369|ref|ZP_01440266.1| NADH dehydrogenase subunit C [Fulvimarina pelagi HTCC2506]
 gi|114537250|gb|EAU40377.1| NADH dehydrogenase subunit C [Fulvimarina pelagi HTCC2506]
          Length = 202

 Score =  236 bits (602), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 104/195 (53%), Positives = 136/195 (69%)

Query: 6   EDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDF 65
            D+ D ++ S    +       GEL+L V   ++V + + LRDDP   F+N +DLCGVDF
Sbjct: 8   SDVRDAVLESLEDRIEDHFFRFGELTLVVTPENVVKVMTTLRDDPKMQFINFVDLCGVDF 67

Query: 66  LSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFE 125
             R  RF+VVYH LSP+ N R+RVK   AE   VPS+  ++P ADWFERE +D+YGI F 
Sbjct: 68  PQREKRFEVVYHLLSPRQNCRIRVKTMTAEDDPVPSVSDVFPAADWFEREAYDLYGILFT 127

Query: 126 GHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPW 185
           GHPDLRRILTDYGFEG+PLRKDFP+TGFVE+ YD++ K+VVY PV+L QE R++DFLSPW
Sbjct: 128 GHPDLRRILTDYGFEGYPLRKDFPLTGFVEVRYDEERKQVVYEPVDLRQEFRNFDFLSPW 187

Query: 186 EGVNSLFAKEDSKDD 200
           EG   +   ++   +
Sbjct: 188 EGTEYVLPGDEKAPN 202


>gi|302563721|ref|NP_001181232.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 3,
           mitochondrial [Macaca mulatta]
          Length = 264

 Score =  236 bits (602), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 86/196 (43%), Positives = 126/196 (64%), Gaps = 1/196 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +++   G+Y+       V+    S   EL + +    ++ + +FLRD  +  F +++DL 
Sbjct: 56  KQLSAFGEYVAEILPKYVQQVQVSCFNELEVCIHPDGIIPVLTFLRDHTNAQFKSLVDLT 115

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  +R NRF++VY+ LS ++N R+RVK    E   + S + ++  A+W+ERE+WDM+G
Sbjct: 116 AVDVPTRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPIESAMSVFKAANWYEREIWDMFG 175

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP RKDFP++G+VE+ YDD+VK+VV  PVEL QE R +D 
Sbjct: 176 VFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEVKRVVAEPVELAQEFRKFDL 235

Query: 182 LSPWEGVNSLFAKEDS 197
            SPWE         +S
Sbjct: 236 NSPWEAFPVYRQPPES 251


>gi|326428094|gb|EGD73664.1| NADH dehydrogenase iron-sulfur protein 3 [Salpingoeca sp. ATCC
           50818]
          Length = 246

 Score =  236 bits (601), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 95/193 (49%), Positives = 132/193 (68%), Gaps = 4/193 (2%)

Query: 1   MVR---KIEDLGDYIVNSFSGSVRFAVNSV-GELSLDVDCGDLVSLCSFLRDDPHCCFVN 56
           M     K+E+LG +I ++    ++ A  S   EL L +    ++ + +FLRD+  C F  
Sbjct: 44  MTEERQKLEELGQFIASALPKYIQVAQVSACDELELFIAPASVLPVLTFLRDNTLCQFKV 103

Query: 57  IIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREV 116
           + D CGVD   R+NRF++VY+ LS ++N R+RV+    E  +V S   ++  A+W+ERE+
Sbjct: 104 LADQCGVDIPKRANRFEIVYNLLSLRHNLRVRVRTYTDELSAVDSACSVFNAANWYEREI 163

Query: 117 WDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEH 176
           WDMYG++F GHPDLRRILTDYGFEGHPLRKDFP++GFVE+ YD+ VK+VV  PVEL QE 
Sbjct: 164 WDMYGVYFLGHPDLRRILTDYGFEGHPLRKDFPLSGFVEVRYDEDVKRVVCEPVELAQEF 223

Query: 177 RDYDFLSPWEGVN 189
           R +DF SPWE + 
Sbjct: 224 RKFDFESPWEQLP 236


>gi|319407265|emb|CBI80904.1| NADH dehydrogenase I chain C [Bartonella sp. 1-1C]
          Length = 202

 Score =  236 bits (601), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 99/198 (50%), Positives = 131/198 (66%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + +L  Y+ +     +  ++ + GEL++      +  +  F+RDD  C F++I D+
Sbjct: 1   MSETLSELSSYLKDKLGDKIEESILAFGELTIVSRLDAITDVLMFVRDDSRCQFISITDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
            GVD+ SR  RFDV Y  LSP++N RLR+K+   E  +V S   IYPGA+W+ERE +DMY
Sbjct: 61  SGVDYPSREKRFDVSYQLLSPRHNLRLRIKVRTDENIAVASACSIYPGAEWYEREAYDMY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGFEGHPLRKDFPVTGFVE  YD++ K+V+Y PV L QE R++D
Sbjct: 121 GILFSGHPDLRRILTDYGFEGHPLRKDFPVTGFVECRYDNEAKRVIYEPVVLRQEMRNFD 180

Query: 181 FLSPWEGVNSLFAKEDSK 198
           FLSPWEG   +       
Sbjct: 181 FLSPWEGHEHISLCGKKS 198


>gi|218516290|ref|ZP_03513130.1| NADH dehydrogenase subunit C [Rhizobium etli 8C-3]
          Length = 177

 Score =  236 bits (601), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 109/176 (61%), Positives = 128/176 (72%)

Query: 24  VNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKY 83
               GEL+L     +L+ L +FLRDD  C FVN+ID+CGVD+  R  RFDVVYH LSPK 
Sbjct: 1   QLKYGELTLTATGENLIPLLTFLRDDAKCGFVNLIDICGVDWPQRELRFDVVYHLLSPKT 60

Query: 84  NRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHP 143
           N R+RVK+A  E   VPS   +YPGADWFERE WDMYG+ F GHPDLRRILTDYGFEGHP
Sbjct: 61  NLRIRVKVATDEDTPVPSACAVYPGADWFERETWDMYGVLFTGHPDLRRILTDYGFEGHP 120

Query: 144 LRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEGVNSLFAKEDSKD 199
           LRKDFP TGFVE+ YDD  K+VVY PVEL QE R++DF+SPWEG   +   ++   
Sbjct: 121 LRKDFPTTGFVEVRYDDAAKRVVYEPVELKQEFRNFDFMSPWEGTEYVLPGDEKAK 176


>gi|242773027|ref|XP_002478155.1| NADH-ubiquinone oxidoreductase 304 kDa subunit precursor
           [Talaromyces stipitatus ATCC 10500]
 gi|218721774|gb|EED21192.1| NADH-ubiquinone oxidoreductase 304 kDa subunit precursor
           [Talaromyces stipitatus ATCC 10500]
          Length = 285

 Score =  236 bits (601), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 85/189 (44%), Positives = 122/189 (64%), Gaps = 1/189 (0%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
              +   G YI++     V+       EL++ V    LV + +FL+      F  I D+ 
Sbjct: 72  ADAMHKYGQYIMSCLPKYVQQFSVWKDELTIFVPPSGLVPVMTFLKYHTAAEFTQISDIT 131

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD+ +R  RF+VVY+ LS ++N R+RVK    E + VPS+  +Y GA W+EREV+DM+G
Sbjct: 132 AVDYPTRDQRFEVVYNLLSVRHNSRIRVKTYCDEAQPVPSMTSLYDGALWYEREVYDMFG 191

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD- 180
           +FF GHPDLRR+LTDYGF+GHPLRKDFP+TG+ E+ YD++ K++VY P+EL Q  R+++ 
Sbjct: 192 VFFSGHPDLRRMLTDYGFDGHPLRKDFPLTGYTEIRYDEEKKRIVYEPLELTQAFRNFEG 251

Query: 181 FLSPWEGVN 189
             S WE V 
Sbjct: 252 GTSSWEQVG 260


>gi|302383047|ref|YP_003818870.1| NADH (or F420H2) dehydrogenase, subunit C [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302193675|gb|ADL01247.1| NADH (or F420H2) dehydrogenase, subunit C [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 231

 Score =  235 bits (600), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 94/200 (47%), Positives = 130/200 (65%), Gaps = 8/200 (4%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
              +  LG  +V +       A  + GEL+L      +V + + LRD     F  ++D+C
Sbjct: 21  TAVLTPLGQEMVAALQ---VDATVAYGELTLTCHRDRIVGVLTDLRD--RFGFQQLLDVC 75

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
           GVD+  R+ RFDVVYH LS   N R+RVK+   E   VP+++ +YP A+WFERE +DMYG
Sbjct: 76  GVDYPDRAERFDVVYHLLSLTRNARVRVKVTTDEVAPVPTVISVYPSAEWFEREAFDMYG 135

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           + F  HPDLRR+LTDYGF+GHPLRKDFP+TG+VE+ YD++ K+VVY PV+L QE R++DF
Sbjct: 136 MLFSDHPDLRRLLTDYGFQGHPLRKDFPMTGYVEVRYDEEQKRVVYEPVKLTQEFRNFDF 195

Query: 182 LSPWEGVNS---LFAKEDSK 198
           LSPWEG      +   ++  
Sbjct: 196 LSPWEGAEYPADVLPGDEKA 215


>gi|302694895|ref|XP_003037126.1| hypothetical protein SCHCODRAFT_80667 [Schizophyllum commune H4-8]
 gi|300110823|gb|EFJ02224.1| hypothetical protein SCHCODRAFT_80667 [Schizophyllum commune H4-8]
          Length = 269

 Score =  235 bits (600), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 87/189 (46%), Positives = 121/189 (64%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
              +   G Y++      ++       EL++      L+ + +FLRD   C F + +D+ 
Sbjct: 54  TEALHTYGAYLMQCMPKFIQQFSVLRDELTIYTAPSGLIPVLTFLRDHGQCQFKSCMDVS 113

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
           G D+  R  RF+ VYH LS +   R+RVK    E   +PS VG+YPGA+W+ERE WD+YG
Sbjct: 114 GADYPEREKRFESVYHLLSYRSGGRIRVKTYAGEADPIPSAVGVYPGANWYEREAWDLYG 173

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           IF+ GHPDLRRILTDYGFEGHPLRKDFP++G+ EL YD++ K+VVY P++L Q  R+++ 
Sbjct: 174 IFYSGHPDLRRILTDYGFEGHPLRKDFPISGYTELRYDEERKRVVYEPLQLTQAFRNFEA 233

Query: 182 LSPWEGVNS 190
            SPWE V  
Sbjct: 234 QSPWEQVGH 242


>gi|73983298|ref|XP_533185.2| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein
           3, 30kDa (NADH-coenzyme Q reductase) [Canis familiaris]
          Length = 263

 Score =  235 bits (600), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 89/196 (45%), Positives = 126/196 (64%), Gaps = 1/196 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +++   G+Y+       V+    S   EL + +    ++ + +FLRD  +  F ++ DL 
Sbjct: 55  KQLSAFGEYVAEILPKYVQQVQVSCFNELEICIHPDGVIPVLTFLRDHTNAQFKSLADLT 114

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  +R NRF++VY+ LS ++N R+RVK    E   + S V +Y  A+W+ERE+WDM+G
Sbjct: 115 AVDIPTRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPIESTVSVYKAANWYEREIWDMFG 174

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP RKDFP++G+VEL YDD+VK+VV  PVEL QE R +D 
Sbjct: 175 VFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDL 234

Query: 182 LSPWEGVNSLFAKEDS 197
            SPWE   +     +S
Sbjct: 235 NSPWEAFPAYRQPPES 250


>gi|212531471|ref|XP_002145892.1| NADH-ubiquinone oxidoreductase 304 kDa subunit precursor
           [Penicillium marneffei ATCC 18224]
 gi|210071256|gb|EEA25345.1| NADH-ubiquinone oxidoreductase 304 kDa subunit precursor
           [Penicillium marneffei ATCC 18224]
          Length = 285

 Score =  235 bits (600), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 82/189 (43%), Positives = 122/189 (64%), Gaps = 1/189 (0%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
              +   G YI++     V+       EL++ V    L+ + +FL+      +  I D+ 
Sbjct: 72  ADAMHKYGQYIMSCLPKYVQQFSVWKDELTVYVPPSGLIPVMTFLKYHTAAEYTQISDIT 131

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD+ +R  RF+VVY+ LS ++N R+RVK    E + VPS+  ++ GA W+EREV+DM+G
Sbjct: 132 AVDYPTRDQRFEVVYNMLSVRHNSRIRVKTYCDEAQPVPSVTSLFDGALWYEREVYDMFG 191

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD- 180
           +FF GHPDLRR+LTDYGF+GHPLRKDFP+TG+ E+ YD++ K++VY P+EL Q  R+++ 
Sbjct: 192 VFFTGHPDLRRMLTDYGFDGHPLRKDFPLTGYTEIRYDEEKKRIVYEPLELTQAFRNFEG 251

Query: 181 FLSPWEGVN 189
             S WE V 
Sbjct: 252 GTSSWEQVG 260


>gi|326920390|ref|XP_003206457.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 3,
           mitochondrial-like [Meleagris gallopavo]
          Length = 344

 Score =  235 bits (599), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 88/195 (45%), Positives = 125/195 (64%), Gaps = 1/195 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +++   G+Y+       ++    +   EL L +    ++ + +FLRD  +  F ++ DL 
Sbjct: 136 KQLCAFGEYVAEILPKYIQQVQVTCFNELELLIHPDGIIPVLTFLRDHTNAQFKSLADLT 195

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  SR  RF++VY+ LS ++N R+RVK    E   + S V ++  A+W+EREVWDMYG
Sbjct: 196 AVDVPSRQYRFEIVYNLLSLRFNSRIRVKTYTDELTPIDSAVSVHKAANWYEREVWDMYG 255

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP RKDFP++G+VE+ YDD+VK+VV  PVEL QE R +D 
Sbjct: 256 VFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEVKRVVAEPVELSQEFRKFDL 315

Query: 182 LSPWEGVNSLFAKED 196
            SPWE   +  A  +
Sbjct: 316 NSPWEAFPAYRAPPE 330


>gi|62955483|ref|NP_001017755.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 3,
           mitochondrial [Danio rerio]
 gi|62205446|gb|AAH93359.1| NADH dehydrogenase (ubiquinone) Fe-S protein 3, (NADH-coenzyme Q
           reductase) [Danio rerio]
 gi|182889640|gb|AAI65450.1| Ndufs3 protein [Danio rerio]
          Length = 255

 Score =  234 bits (598), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 88/197 (44%), Positives = 126/197 (63%), Gaps = 1/197 (0%)

Query: 4   KIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
           ++ + G+Y+       V+    +   EL + V    ++ + +FL+D  +  F N+ DL  
Sbjct: 50  QLSEFGEYVAEILPKYVQQVQVTCFNELEIMVHPEGIIPVLTFLKDHTNAQFRNLADLTA 109

Query: 63  VDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGI 122
           VD  S+ NRF++VY+ LS  YN R+RVK    E   + S V ++  ++W+EREVWDM+G+
Sbjct: 110 VDIPSKQNRFEIVYNLLSLHYNSRIRVKTYTDELTPLDSSVPVFQASNWYEREVWDMFGV 169

Query: 123 FFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFL 182
           FF  HPDLRRILTDYGFEGHP RKDFP++G+VE+ YDD+VK+VV  PVEL QE R +D  
Sbjct: 170 FFTNHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEVKRVVAEPVELAQEFRKFDLN 229

Query: 183 SPWEGVNSLFAKEDSKD 199
           SPWE   +    +D+  
Sbjct: 230 SPWEAFPAYRGPKDAPK 246


>gi|254780854|ref|YP_003065267.1| NADH dehydrogenase subunit C [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040531|gb|ACT57327.1| NADH dehydrogenase subunit C [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 202

 Score =  234 bits (598), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 202/202 (100%), Positives = 202/202 (100%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL
Sbjct: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
           CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY
Sbjct: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD
Sbjct: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180

Query: 181 FLSPWEGVNSLFAKEDSKDDMS 202
           FLSPWEGVNSLFAKEDSKDDMS
Sbjct: 181 FLSPWEGVNSLFAKEDSKDDMS 202


>gi|296218072|ref|XP_002755284.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 3,
           mitochondrial-like [Callithrix jacchus]
          Length = 262

 Score =  234 bits (598), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 87/196 (44%), Positives = 125/196 (63%), Gaps = 1/196 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +++   G+Y+       V+    S   EL + +    ++ + +FL+D  +  F ++ DL 
Sbjct: 54  KQLSAFGEYVAEILPKYVQQVQVSLFDELEICIHPDGIIPVLTFLKDHTNAQFKSLADLT 113

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  +R NRF++VY+ LS ++N R+RVK    E   + S+  ++  A+W+EREVWDM+G
Sbjct: 114 AVDIPTRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPIESLTSVFKAANWYEREVWDMFG 173

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP RKDFP++G+VEL YDD+VK+VV  PVEL QE R +D 
Sbjct: 174 VFFVNHPDLRRILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDL 233

Query: 182 LSPWEGVNSLFAKEDS 197
            SPWE         +S
Sbjct: 234 NSPWEAFPIYRQPPES 249


>gi|326474911|gb|EGD98920.1| NADH-ubiquinone oxidoreductase 304 kDa subunit [Trichophyton
           tonsurans CBS 112818]
          Length = 308

 Score =  234 bits (597), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 86/202 (42%), Positives = 128/202 (63%), Gaps = 3/202 (1%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
             K+   G Y+++     ++       EL++ V    +V + +FLRD     +  + D+ 
Sbjct: 77  SAKLHTYGQYLISCLPKYIQQFSVWKDELTIYVPPAGVVPVMTFLRDHTAAEYTQVSDIT 136

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VDF +R  RF+VVY+ LS ++N R+RVK    E   VPSI  +Y GA WFEREV+DM+G
Sbjct: 137 AVDFPTREYRFEVVYNLLSVRHNSRIRVKTYADEATPVPSITSLYDGALWFEREVYDMFG 196

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD- 180
           +FF GHPDLRRI+TDYGF+GHPLRKDFP++G+ E+ YD++ K++V  P+EL Q  R+++ 
Sbjct: 197 VFFTGHPDLRRIMTDYGFDGHPLRKDFPLSGYTEIRYDEEKKRIVVEPLELTQAFRNFEG 256

Query: 181 FLSPWEGVNSLFAKEDSKDDMS 202
             S WEG+      +   D++S
Sbjct: 257 GSSAWEGIG--QGVDRKPDNVS 276


>gi|4758788|ref|NP_004542.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 3,
           mitochondrial precursor [Homo sapiens]
 gi|6166589|sp|O75489|NDUS3_HUMAN RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           3, mitochondrial; AltName: Full=Complex I-30kD;
           Short=CI-30kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 30 kDa subunit; Flags: Precursor
 gi|10443631|gb|AAG17541.1|AF200954_1 NADH dehydrogenase-ubiquinone 30 kDa subunit [Homo sapiens]
 gi|3337441|gb|AAC27451.1| NADH:ubiquinone oxidoreductase NDUFS3 subunit [Homo sapiens]
 gi|12653669|gb|AAH00617.1| NADH dehydrogenase (ubiquinone) Fe-S protein 3, 30kDa
           (NADH-coenzyme Q reductase) [Homo sapiens]
 gi|119588301|gb|EAW67895.1| NADH dehydrogenase (ubiquinone) Fe-S protein 3, 30kDa
           (NADH-coenzyme Q reductase), isoform CRA_a [Homo
           sapiens]
 gi|123982062|gb|ABM82860.1| NADH dehydrogenase (ubiquinone) Fe-S protein 3, 30kDa
           (NADH-coenzyme Q reductase) [synthetic construct]
 gi|123996891|gb|ABM86047.1| NADH dehydrogenase (ubiquinone) Fe-S protein 3, 30kDa
           (NADH-coenzyme Q reductase) [synthetic construct]
 gi|189054031|dbj|BAG36538.1| unnamed protein product [Homo sapiens]
          Length = 264

 Score =  234 bits (597), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 88/196 (44%), Positives = 126/196 (64%), Gaps = 1/196 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +++   G+Y+       V+    S   EL + +    ++ + +FLRD  +  F +++DL 
Sbjct: 56  KQLSAFGEYVAEILPKYVQQVQVSCFNELEVCIHPDGVIPVLTFLRDHTNAQFKSLVDLT 115

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  +R NRF++VY+ LS ++N R+RVK    E   + S V ++  A+W+ERE+WDM+G
Sbjct: 116 AVDVPTRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPIESAVSVFKAANWYEREIWDMFG 175

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP RKDFP++G+VEL YDD+VK+VV  PVEL QE R +D 
Sbjct: 176 VFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDL 235

Query: 182 LSPWEGVNSLFAKEDS 197
            SPWE         +S
Sbjct: 236 NSPWEAFPVYRQPPES 251


>gi|120952190|ref|NP_001073382.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 3,
           mitochondrial precursor [Pan troglodytes]
 gi|115502345|sp|Q0MQG8|NDUS3_PANTR RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           3, mitochondrial; AltName: Full=Complex I-30kD;
           Short=CI-30kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 30 kDa subunit; Flags: Precursor
 gi|111661908|gb|ABH12175.1| mitochondrial complex I subunit NDUFS3 [Pan troglodytes]
          Length = 264

 Score =  234 bits (597), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 88/196 (44%), Positives = 126/196 (64%), Gaps = 1/196 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +++   G+Y+       V+    S   EL + +    ++ + +FLRD  +  F +++DL 
Sbjct: 56  KQLSAFGEYVAEILPKYVQQVQVSCFNELEVCIHPDGVIPVLTFLRDHTNAQFKSLVDLT 115

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  +R NRF++VY+ LS ++N R+RVK    E   + S V ++  A+W+ERE+WDM+G
Sbjct: 116 AVDVPTRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPIESAVSVFKAANWYEREIWDMFG 175

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP RKDFP++G+VEL YDD+VK+VV  PVEL QE R +D 
Sbjct: 176 VFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDL 235

Query: 182 LSPWEGVNSLFAKEDS 197
            SPWE         +S
Sbjct: 236 NSPWEAFPVYRQPPES 251


>gi|194217899|ref|XP_001491322.2| PREDICTED: similar to NADH dehydrogenase [ubiquinone] iron-sulfur
           protein 3, mitochondrial precursor (NADH-ubiquinone
           oxidoreductase 30 kDa subunit) (Complex I-30kD)
           (CI-30kD) [Equus caballus]
          Length = 263

 Score =  234 bits (597), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 88/196 (44%), Positives = 126/196 (64%), Gaps = 1/196 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +++   G+Y+       V+    S   EL + +    ++ + +FLRD  +  F ++ DL 
Sbjct: 55  KQLSAFGEYVAEILPKYVQQVQVSCFNELEICIHPDGVIPVLTFLRDHSNAQFKSLADLT 114

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  +R NRF++VY+ LS ++N R+RVK    E   + S V ++  A+W+ERE+WDM+G
Sbjct: 115 AVDIPTRQNRFEIVYNLLSLRFNCRIRVKTYTDELTPIESAVSVHKAANWYEREIWDMFG 174

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP RKDFP++G+VEL YDD+VK+VV  PVEL QE R +D 
Sbjct: 175 VFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDL 234

Query: 182 LSPWEGVNSLFAKEDS 197
            SPWE   +     +S
Sbjct: 235 NSPWEAFPAYRQPPES 250


>gi|195442360|ref|XP_002068926.1| GK18031 [Drosophila willistoni]
 gi|194165011|gb|EDW79912.1| GK18031 [Drosophila willistoni]
          Length = 266

 Score =  234 bits (597), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 84/198 (42%), Positives = 120/198 (60%), Gaps = 1/198 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAV-NSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
             + D G Y+       V+     +  EL + +    +V +  FL+D     F N++D+ 
Sbjct: 58  TNLSDFGRYVAECLPKYVQKVQLTAGDELEVLIAPEGVVPVLQFLKDHHQAQFTNLVDIA 117

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
           G+D   R NRF+VVY+ LS ++N R+RVK    E   + S   ++  A+W+ERE+WDMYG
Sbjct: 118 GLDVPCRKNRFEVVYNLLSLRFNARIRVKTYTDELTPLDSACDVHKAANWYEREIWDMYG 177

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP R+DFP++G+VEL YDD+ K+VV  P+EL QE R +D 
Sbjct: 178 VFFANHPDLRRILTDYGFEGHPQRRDFPLSGYVELRYDDEKKRVVCEPLELAQEFRKFDL 237

Query: 182 LSPWEGVNSLFAKEDSKD 199
            +PWE   +        +
Sbjct: 238 SAPWEQFPNFRNANPPAE 255


>gi|225681275|gb|EEH19559.1| NADH-ubiquinone oxidoreductase 27 kDa subunit [Paracoccidioides
           brasiliensis Pb03]
          Length = 288

 Score =  234 bits (597), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 82/198 (41%), Positives = 125/198 (63%), Gaps = 1/198 (0%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
              +   G Y+++     ++       EL++ V    ++ + +FL+      +  + D+ 
Sbjct: 74  SAALHKYGQYLISCLPKYIQQFSVWKDELTIYVPPSGIIPVFTFLKQHTAAEYTQVSDIT 133

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VDF +R  RF+VVY+ LS ++N R+RVK    E   VPSI G+Y GA W+EREV+DM+G
Sbjct: 134 AVDFPTRDQRFEVVYNLLSVRHNSRIRVKTYADEATPVPSITGLYDGALWYEREVYDMFG 193

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD- 180
           +FF GHPDLRRI+TDYGF+GHPLRKDFP+TG+ E+ YD++ K++V  P+EL Q  R+++ 
Sbjct: 194 VFFVGHPDLRRIMTDYGFDGHPLRKDFPLTGYTEIRYDEEKKRIVVEPLELTQAFRNFEG 253

Query: 181 FLSPWEGVNSLFAKEDSK 198
             S WE +     K+ S+
Sbjct: 254 GTSAWEQIGEGIDKKPSE 271


>gi|254418963|ref|ZP_05032687.1| NADH (or F420H2) dehydrogenase, subunit C subfamily, putative
           [Brevundimonas sp. BAL3]
 gi|196185140|gb|EDX80116.1| NADH (or F420H2) dehydrogenase, subunit C subfamily, putative
           [Brevundimonas sp. BAL3]
          Length = 209

 Score =  234 bits (596), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 91/181 (50%), Positives = 122/181 (67%), Gaps = 5/181 (2%)

Query: 21  RFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLS 80
             A  + GEL+L      +V + + LRD     F  ++DLCG D+  R  RF+VVYH LS
Sbjct: 27  VEAQVAFGELTLLAPRERIVEVMTALRD--QFGFQQLLDLCGADYPDREERFEVVYHLLS 84

Query: 81  PKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFE 140
              N R+RVK+   E + V ++ G+YP A WFERE +DMYG+ F GHPD+RR+LTDYGFE
Sbjct: 85  MTRNARVRVKVVTDEVQPVATVTGVYPSAGWFEREAYDMYGVIFSGHPDMRRLLTDYGFE 144

Query: 141 GHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEGVNS---LFAKEDS 197
           GHPLRKDFP+TG+VE+ YD++ K+VVY PV+L QE R +DFLSPWEG +    +   ++ 
Sbjct: 145 GHPLRKDFPMTGYVEVRYDEEQKRVVYEPVKLTQEFRTFDFLSPWEGADYPAPVLPGDEK 204

Query: 198 K 198
            
Sbjct: 205 A 205


>gi|226372312|gb|ACO51781.1| NADH dehydrogenase iron-sulfur protein 3, mitochondrial precursor
           [Rana catesbeiana]
          Length = 253

 Score =  234 bits (596), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 89/198 (44%), Positives = 127/198 (64%), Gaps = 1/198 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
            ++   G+Y+       V+    +  GEL + +  G ++ + +FLRD  +  F N+ DL 
Sbjct: 46  NQLSAFGEYVSEILPKYVQQVQVTCFGELEIMIHPGGVIPVLTFLRDHTNAQFKNMADLT 105

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            V   +R NRF+++Y+ LS ++N R+RVK    E   V SIV ++   +W+EREVWDMYG
Sbjct: 106 AVGIPTRENRFEIIYNLLSLRFNARIRVKTYADELTPVESIVSVHKAVNWYEREVWDMYG 165

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP RKDFP++G+VE+ YDD+VK+VV  PV+L QE R +D 
Sbjct: 166 VFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEVKRVVAEPVQLSQEFRKFDL 225

Query: 182 LSPWEGVNSLFAKEDSKD 199
            SPWE   +    ++S  
Sbjct: 226 SSPWEAFPAHREAQESPK 243


>gi|115502344|sp|Q0MQG7|NDUS3_GORGO RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           3, mitochondrial; AltName: Full=Complex I-30kD;
           Short=CI-30kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 30 kDa subunit; Flags: Precursor
 gi|111661910|gb|ABH12176.1| mitochondrial complex I subunit NDUFS3 [Gorilla gorilla]
          Length = 263

 Score =  234 bits (596), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 88/196 (44%), Positives = 126/196 (64%), Gaps = 1/196 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +++   G+Y+       V+    S   EL + +    ++ + +FLRD  +  F +++DL 
Sbjct: 55  KQLSAFGEYVAEILPKYVQQVQVSCFNELEVCIHPDGVIPVLTFLRDHTNAQFKSLVDLT 114

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  +R NRF++VY+ LS ++N R+RVK    E   + S V ++  A+W+ERE+WDM+G
Sbjct: 115 AVDVPTRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPIESAVSVFKAANWYEREIWDMFG 174

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP RKDFP++G+VEL YDD+VK+VV  PVEL QE R +D 
Sbjct: 175 VFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDL 234

Query: 182 LSPWEGVNSLFAKEDS 197
            SPWE         +S
Sbjct: 235 NSPWEAFPVYRQPPES 250


>gi|319404257|emb|CBI77850.1| NADH dehydrogenase I chain C [Bartonella rochalimae ATCC BAA-1498]
          Length = 202

 Score =  234 bits (596), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 100/198 (50%), Positives = 132/198 (66%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + +L  Y+ +     +  ++ + GEL++      +  +  F+RDD  C F++I D+
Sbjct: 1   MSETLSELSSYLKDKLGDKIEESILAFGELTVVSRLDAITDVLMFVRDDSRCQFISITDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
            GVD+ SR  RFDV Y  LSP++N RLRVK+   E  +V S   IYPGA+W+ERE +DMY
Sbjct: 61  SGVDYPSREKRFDVSYQLLSPRHNLRLRVKVRTDENVAVASACSIYPGAEWYEREAYDMY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGFEGHPLRKDFPVTGFVE  YD++VK+++Y PV L QE R++D
Sbjct: 121 GILFSGHPDLRRILTDYGFEGHPLRKDFPVTGFVECRYDNEVKRIIYEPVVLRQEMRNFD 180

Query: 181 FLSPWEGVNSLFAKEDSK 198
           FLSPWEG   +       
Sbjct: 181 FLSPWEGNEHISLCGKKS 198


>gi|115502346|sp|Q0MQG6|NDUS3_PONPY RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           3, mitochondrial; AltName: Full=Complex I-30kD;
           Short=CI-30kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 30 kDa subunit; Flags: Precursor
 gi|111661912|gb|ABH12177.1| mitochondrial complex I subunit NDUFS3 [Pongo pygmaeus]
          Length = 263

 Score =  234 bits (596), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 88/196 (44%), Positives = 126/196 (64%), Gaps = 1/196 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +++   G+Y+       V+    S   EL + +    ++ + +FLRD  +  F +++DL 
Sbjct: 55  QQLSAFGEYVAEILPKYVQQVQVSCFNELEVCIHPDGVIPVLTFLRDHTNAQFKSLVDLT 114

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  +R NRF++VY+ LS ++N R+RVK    E   + S V ++  A+W+ERE+WDM+G
Sbjct: 115 AVDVPTRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPIESAVSVFKAANWYEREIWDMFG 174

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP RKDFP++G+VEL YDD+VK+VV  PVEL QE R +D 
Sbjct: 175 VFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDL 234

Query: 182 LSPWEGVNSLFAKEDS 197
            SPWE         +S
Sbjct: 235 NSPWEAFPVYRQPPES 250


>gi|226292012|gb|EEH47432.1| NADH dehydrogenase iron-sulfur protein [Paracoccidioides
           brasiliensis Pb18]
          Length = 288

 Score =  234 bits (596), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 82/198 (41%), Positives = 125/198 (63%), Gaps = 1/198 (0%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
              +   G Y+++     ++       EL++ V    ++ + +FL+      +  + D+ 
Sbjct: 74  SSALHKYGQYLISCLPKYIQQFSVWKDELTIYVPPSGIIPVFTFLKQHTAAEYTQVSDIT 133

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VDF +R  RF+VVY+ LS ++N R+RVK    E   VPSI G+Y GA W+EREV+DM+G
Sbjct: 134 AVDFPTRDQRFEVVYNLLSVRHNSRIRVKTYADEATPVPSITGLYDGALWYEREVYDMFG 193

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD- 180
           +FF GHPDLRRI+TDYGF+GHPLRKDFP+TG+ E+ YD++ K++V  P+EL Q  R+++ 
Sbjct: 194 VFFVGHPDLRRIMTDYGFDGHPLRKDFPLTGYTEIRYDEEKKRIVVEPLELTQAFRNFEG 253

Query: 181 FLSPWEGVNSLFAKEDSK 198
             S WE +     K+ S+
Sbjct: 254 GTSAWEQIGEGIDKKPSE 271


>gi|291384976|ref|XP_002709147.1| PREDICTED: NADH dehydrogenase (ubiquinone) Fe-S protein 3
           [Oryctolagus cuniculus]
          Length = 263

 Score =  234 bits (596), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 90/196 (45%), Positives = 126/196 (64%), Gaps = 1/196 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +++   G+Y+       V+    S   EL + +    ++ + +FLRD  +  F ++ DL 
Sbjct: 55  KQLSAFGEYVAEILPKYVQHVQVSCFDELEICIHPDGVIPVLTFLRDHTNAQFKSLADLT 114

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  SR NRF++VY+ LS ++N R+RVK    E   V S V ++  A+W+ERE+WDM+G
Sbjct: 115 AVDIPSRQNRFEIVYNLLSLRFNTRIRVKTYTDELTPVDSAVPVHKAANWYEREIWDMFG 174

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP RKDFP++G+VEL YDD+VK+VV  PVEL QE R +D 
Sbjct: 175 VFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDL 234

Query: 182 LSPWEGVNSLFAKEDS 197
            SPWE   +     +S
Sbjct: 235 NSPWEAFPAYRQPPES 250


>gi|83592892|ref|YP_426644.1| NADH dehydrogenase subunit C [Rhodospirillum rubrum ATCC 11170]
 gi|123526696|sp|Q2RU38|NUOC_RHORT RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|83575806|gb|ABC22357.1| NADH (or F420H2) dehydrogenase, subunit C [Rhodospirillum rubrum
           ATCC 11170]
          Length = 213

 Score =  234 bits (596), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 91/201 (45%), Positives = 132/201 (65%), Gaps = 4/201 (1%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
             +++LG  I  +    V     +  EL +      +  + +FLRDD  C F  ++D+ G
Sbjct: 10  ESLKELGARIEAALPTDVVRVEMAKDELQVIAQRPSIAKVLTFLRDDSACRFSQLVDIAG 69

Query: 63  VDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGI 122
           VD+ SR  RF+VVY+ LS  +N+R+RVKI+ +E   VPS+  ++  A+WFERE WDMYGI
Sbjct: 70  VDYPSREERFEVVYNMLSMHHNQRIRVKISASEDTPVPSVTRVFSSANWFEREAWDMYGI 129

Query: 123 FFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFL 182
           FF  HPDLRR+L+DYGFEGH  RKDFP+TG+ E+ YD+++K+VVY PV L Q+ R +DFL
Sbjct: 130 FFSEHPDLRRLLSDYGFEGHAQRKDFPLTGYKEVRYDEELKRVVYEPVRLSQDFRTFDFL 189

Query: 183 SPWEGVN----SLFAKEDSKD 199
           SPWEG++     +   ++  +
Sbjct: 190 SPWEGMDRQIRRVLPGDEKAE 210


>gi|238581805|ref|XP_002389728.1| hypothetical protein MPER_11103 [Moniliophthora perniciosa FA553]
 gi|215452310|gb|EEB90658.1| hypothetical protein MPER_11103 [Moniliophthora perniciosa FA553]
          Length = 240

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 96/195 (49%), Positives = 125/195 (64%), Gaps = 7/195 (3%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
             ++   G Y+       ++       EL+L V    ++ +  FLRD   C F +I+D+ 
Sbjct: 22  TEQLHTYGSYLTQCLPKFIQQFSVVNDELTLYVAPSAILPVLQFLRDHSQCQFKSIMDIS 81

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
           GVDF  R  RF+VVYH LS KY  R+RVK    EG  VPS V ++ GADW+ERE WD++G
Sbjct: 82  GVDFPEREKRFEVVYHMLSVKYRGRIRVKTYAGEGDHVPSAVELFRGADWYEREAWDLFG 141

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVT-------GFVELHYDDKVKKVVYRPVELMQ 174
           IFF GHPDLRRILTDYGFEGHPLRKDFP+T       G+ EL YD++ K+VVY P++L Q
Sbjct: 142 IFFSGHPDLRRILTDYGFEGHPLRKDFPLTVGIIEVSGYTELRYDEERKRVVYEPLQLTQ 201

Query: 175 EHRDYDFLSPWEGVN 189
             R+++ LSPWE V 
Sbjct: 202 AFRNFEALSPWEQVG 216


>gi|266655|sp|P29917|NQO5_PARDE RecName: Full=NADH-quinone oxidoreductase chain 5; AltName:
           Full=NADH dehydrogenase I, chain 5; AltName: Full=NDH-1,
           chain 5
          Length = 207

 Score =  233 bits (594), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 99/206 (48%), Positives = 137/206 (66%), Gaps = 6/206 (2%)

Query: 1   MVRKIED-----LGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFV 55
           M   + D     L ++I       V     +VGEL+++     ++ L  FLR+DP+C F 
Sbjct: 1   MSEALSDEALLELAEHIAVRRENDVISTQ-AVGELTVNATLSGVIGLIEFLRNDPNCRFS 59

Query: 56  NIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFERE 115
            +ID+  VD  +R  RFDVVYH LS   N+R+RVK+ V E + VPS++G++PGA+W+ERE
Sbjct: 60  TLIDITAVDNPARPARFDVVYHLLSMYQNQRIRVKVQVREDELVPSLIGVFPGANWYERE 119

Query: 116 VWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQE 175
           V+D++GI F GH DLRRILTDYGF GHPLRKDFP TG+VE+ + D  K+VVY PV L+QE
Sbjct: 120 VFDLFGILFSGHSDLRRILTDYGFRGHPLRKDFPTTGYVEVRWSDIEKRVVYEPVNLVQE 179

Query: 176 HRDYDFLSPWEGVNSLFAKEDSKDDM 201
           +R +DFLSPWEG   +   ++   + 
Sbjct: 180 YRQFDFLSPWEGAKYVLPGDEKAPEA 205


>gi|115400439|ref|XP_001215808.1| NADH-ubiquinone oxidoreductase 30.4 kDa subunit, mitochondrial
           precursor [Aspergillus terreus NIH2624]
 gi|114191474|gb|EAU33174.1| NADH-ubiquinone oxidoreductase 30.4 kDa subunit, mitochondrial
           precursor [Aspergillus terreus NIH2624]
          Length = 688

 Score =  233 bits (594), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 84/199 (42%), Positives = 123/199 (61%), Gaps = 3/199 (1%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
              +   G YI+      V+       EL + V    ++ + SFL+      +  I D+ 
Sbjct: 27  ADSLHKYGQYIMACLPKHVQQFSVWKDELVIYVPPTGVIPVMSFLKYHTAAEYTQISDIT 86

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VDF +R  RF+VVY+ LS +YN R+RVK    E + VPS+ G++ GA W+EREV+DM+G
Sbjct: 87  AVDFPTRDQRFEVVYNLLSVRYNSRIRVKTYADEARPVPSVTGLFEGALWYEREVYDMFG 146

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF GHPDLRRI+TDYGF+GHPLRKDFP+TG+ EL YD++ K++V  P+EL Q  R+++ 
Sbjct: 147 VFFSGHPDLRRIMTDYGFDGHPLRKDFPLTGYTELRYDEEKKRIVIEPLELTQAFRNFEG 206

Query: 182 LS-PWEGVNSLFAKEDSKD 199
            +  WE V     ++   +
Sbjct: 207 GTAAWEPVG--LGQDRKPE 223


>gi|27807353|ref|NP_777244.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 3,
           mitochondrial precursor [Bos taurus]
 gi|163416|gb|AAA30663.1| NADH dehydrogenase (ubiquinone) [Bos taurus]
          Length = 266

 Score =  232 bits (593), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 89/196 (45%), Positives = 126/196 (64%), Gaps = 1/196 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +++   G+Y+       V+    S   EL + +    ++ + +FLRD  +  F ++ DL 
Sbjct: 58  KQLSAFGEYVAEILPKYVQQVQVSCFNELEICIHPDGVIPVLTFLRDHSNAQFKSLADLT 117

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  +R NRF++VY+ LS ++N R+RVK    E   + S V +Y  A+W+ERE+WDM+G
Sbjct: 118 AVDIPTRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPIESSVPVYKAANWYEREIWDMFG 177

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP RKDFP++G+VEL YDD+VK+VV  PVEL QE R +D 
Sbjct: 178 VFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDL 237

Query: 182 LSPWEGVNSLFAKEDS 197
            SPWE   +     +S
Sbjct: 238 NSPWEAFPAYRQPPES 253


>gi|5138999|gb|AAD40386.1| NADH-Ubiquinone reductase [Homo sapiens]
          Length = 263

 Score =  232 bits (593), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 88/196 (44%), Positives = 126/196 (64%), Gaps = 1/196 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +++   G+Y+       V+    S   EL + +    ++ + +FLRD  +  F +++DL 
Sbjct: 55  KQLSAFGEYVAEILPKYVQQVQVSCFNELEVCIHPDGVIPVLTFLRDHTNAQFKSLVDLT 114

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  +R NRF++VY+ LS ++N R+RVK    E   + S V ++  A+W+ERE+WDM+G
Sbjct: 115 AVDVPTRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPIESAVSVFKAANWYEREIWDMFG 174

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP RKDFP++G+VEL YDD+VK+VV  PVEL QE R +D 
Sbjct: 175 VFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDL 234

Query: 182 LSPWEGVNSLFAKEDS 197
            SPWE         +S
Sbjct: 235 NSPWEAFPVYRQPPES 250


>gi|295673804|ref|XP_002797448.1| NADH dehydrogenase iron-sulfur protein [Paracoccidioides
           brasiliensis Pb01]
 gi|226282820|gb|EEH38386.1| NADH dehydrogenase iron-sulfur protein [Paracoccidioides
           brasiliensis Pb01]
          Length = 288

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 82/198 (41%), Positives = 125/198 (63%), Gaps = 1/198 (0%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
              +   G Y+++     ++       EL++ V    ++ + +FL+      +  + D+ 
Sbjct: 74  SAALHKYGQYLMSCLPKYIQQFSVWKDELTIYVPPSGIIPVFTFLKQHTAAEYTQVSDIT 133

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VDF +R  RF+VVY+ LS ++N R+RVK    E   VPSI G+Y GA W+EREV+DM+G
Sbjct: 134 AVDFPTRDQRFEVVYNLLSVRHNSRIRVKTYADEATPVPSITGLYDGALWYEREVYDMFG 193

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD- 180
           +FF GHPDLRRI+TDYGF+GHPLRKDFP+TG+ E+ YD++ K++V  P+EL Q  R+++ 
Sbjct: 194 VFFVGHPDLRRIMTDYGFDGHPLRKDFPLTGYTEIRYDEEKKRIVVEPLELTQAFRNFEG 253

Query: 181 FLSPWEGVNSLFAKEDSK 198
             S WE +     K+ S+
Sbjct: 254 GTSAWEQIGEGIDKKPSE 271


>gi|128860|sp|P23709|NDUS3_BOVIN RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           3, mitochondrial; AltName: Full=Complex I-30kD;
           Short=CI-30kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 30 kDa subunit; Flags: Precursor
          Length = 266

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 89/196 (45%), Positives = 126/196 (64%), Gaps = 1/196 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +++   G+Y+       V+    S   EL + +    ++ + +FLRD  +  F ++ DL 
Sbjct: 58  KQLSAFGEYVAEILPKYVQQVQVSCFNELEICIHPDGVIPVLTFLRDHSNAQFKSLADLT 117

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  +R NRF++VY+ LS ++N R+RVK    E   + S V +Y  A+W+ERE+WDM+G
Sbjct: 118 AVDIPTRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPIESSVPVYKAANWYEREIWDMFG 177

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP RKDFP++G+VEL YDD+VK+VV  PVEL QE R +D 
Sbjct: 178 VFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDL 237

Query: 182 LSPWEGVNSLFAKEDS 197
            SPWE   +     +S
Sbjct: 238 NSPWEAFPAYRQPPES 253


>gi|119469919|ref|XP_001257997.1| NADH-ubiquinone oxidoreductase 304 kDa subunit precursor
           [Neosartorya fischeri NRRL 181]
 gi|119406149|gb|EAW16100.1| NADH-ubiquinone oxidoreductase 304 kDa subunit precursor
           [Neosartorya fischeri NRRL 181]
          Length = 285

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 84/189 (44%), Positives = 120/189 (63%), Gaps = 1/189 (0%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
              +   G Y+++     V+       EL++ V    ++ + SFL+      F  I D+ 
Sbjct: 71  AESLHKYGQYVMSCLPKYVQQFSVWKDELTIYVPPTGIIPVMSFLKYHTAAEFTQISDIT 130

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VDF +R  RF+VVY+ LS +YN R+RVK    E   VPS+  +Y GA W+EREV+DM+G
Sbjct: 131 AVDFPTRDQRFEVVYNLLSVRYNSRIRVKTYADEASPVPSVTSLYEGALWYEREVYDMFG 190

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF GHPDLRRI+TDYGF+GHPLRKDFP+TG+ EL YD++ K++V  P+EL Q  R+++ 
Sbjct: 191 VFFSGHPDLRRIMTDYGFDGHPLRKDFPLTGYTELRYDEEKKRIVIEPLELTQAFRNFEG 250

Query: 182 LS-PWEGVN 189
            +  WE V 
Sbjct: 251 GTAAWEPVG 259


>gi|58037117|ref|NP_080964.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 3,
           mitochondrial precursor [Mus musculus]
 gi|146345462|sp|Q9DCT2|NDUS3_MOUSE RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           3, mitochondrial; AltName: Full=Complex I-30kD;
           Short=CI-30kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 30 kDa subunit; Flags: Precursor
 gi|26353322|dbj|BAC40291.1| unnamed protein product [Mus musculus]
 gi|110831747|gb|AAI19268.1| NADH dehydrogenase (ubiquinone) Fe-S protein 3 [Mus musculus]
 gi|110831791|gb|AAI19270.1| NADH dehydrogenase (ubiquinone) Fe-S protein 3 [Mus musculus]
 gi|123213328|emb|CAM15313.1| NADH dehydrogenase (ubiquinone) Fe-S protein 3 [Mus musculus]
 gi|148695558|gb|EDL27505.1| mCG13496, isoform CRA_a [Mus musculus]
          Length = 263

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 91/196 (46%), Positives = 127/196 (64%), Gaps = 1/196 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +++   G+Y+       V+    S + EL + +    ++   +FLRD  +  F ++ DL 
Sbjct: 55  KQLSAFGEYVAEILPKYVQQVQVSCLDELEICIHPDGVIPTLTFLRDHTNAQFKSLADLT 114

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  +R NRF++VY+ LS ++N R+RVK    E   + SIV ++  A+W+EREVWDM+G
Sbjct: 115 AVDVPTRQNRFEIVYNLLSLRFNSRIRVKTYADELTPIDSIVSVHIAANWYEREVWDMFG 174

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP RKDFP+TG+VEL YDD+VK+VV  PVEL QE R +D 
Sbjct: 175 VFFFNHPDLRRILTDYGFEGHPFRKDFPLTGYVELRYDDEVKRVVAEPVELAQEFRKFDL 234

Query: 182 LSPWEGVNSLFAKEDS 197
            SPWE   +     +S
Sbjct: 235 NSPWEAFPAYRQPPES 250


>gi|195169573|ref|XP_002025595.1| GL20750 [Drosophila persimilis]
 gi|194109088|gb|EDW31131.1| GL20750 [Drosophila persimilis]
          Length = 266

 Score =  232 bits (592), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 84/198 (42%), Positives = 120/198 (60%), Gaps = 1/198 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAV-NSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
             + D G Y+       V+     +  EL + +    +V +  FL+D     F N+ID+ 
Sbjct: 58  TSLSDFGRYVAECLPKYVQKVQLTAGDELEVLIAPEGVVPVLQFLKDHHQAQFTNLIDIA 117

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
           G+D   R +RF+V+Y+ LS +YN R+RVK    E   + S   ++  A+W+ERE+WDMYG
Sbjct: 118 GMDVPCRKHRFEVIYNLLSLRYNARIRVKTYTDELTPLDSACEVHKAANWYEREIWDMYG 177

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP R+DFP++G+VEL YDD+ K+VV  P+EL QE R +D 
Sbjct: 178 VFFANHPDLRRILTDYGFEGHPQRRDFPLSGYVELRYDDEKKRVVCEPLELAQEFRKFDL 237

Query: 182 LSPWEGVNSLFAKEDSKD 199
            +PWE   +        +
Sbjct: 238 SAPWEQFPNFRNANPPAE 255


>gi|125977414|ref|XP_001352740.1| GA11380 [Drosophila pseudoobscura pseudoobscura]
 gi|54641490|gb|EAL30240.1| GA11380 [Drosophila pseudoobscura pseudoobscura]
          Length = 266

 Score =  232 bits (592), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 84/198 (42%), Positives = 120/198 (60%), Gaps = 1/198 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAV-NSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
             + D G Y+       V+     +  EL + +    +V +  FL+D     F N+ID+ 
Sbjct: 58  TSLSDFGRYVAECLPKYVQKVQLTAGDELEVLIAPEGVVPVLQFLKDHHQAQFTNLIDIA 117

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
           G+D   R +RF+V+Y+ LS +YN R+RVK    E   + S   ++  A+W+ERE+WDMYG
Sbjct: 118 GMDVPCRKHRFEVIYNLLSLRYNARIRVKTYTDELTPLDSACEVHKAANWYEREIWDMYG 177

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP R+DFP++G+VEL YDD+ K+VV  P+EL QE R +D 
Sbjct: 178 VFFANHPDLRRILTDYGFEGHPQRRDFPLSGYVELRYDDEKKRVVCEPLELAQEFRKFDL 237

Query: 182 LSPWEGVNSLFAKEDSKD 199
            +PWE   +        +
Sbjct: 238 SAPWEQFPNFRNANPPAE 255


>gi|315499790|ref|YP_004088593.1| NADH (or f420h2) dehydrogenase, subunit c [Asticcacaulis
           excentricus CB 48]
 gi|315417802|gb|ADU14442.1| NADH (or F420H2) dehydrogenase, subunit C [Asticcacaulis
           excentricus CB 48]
          Length = 204

 Score =  232 bits (592), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 98/203 (48%), Positives = 133/203 (65%), Gaps = 2/203 (0%)

Query: 1   MVR-KIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIID 59
           M   K   + +     F  ++   +++ GEL+L V+   +V + S LR +P   F  +ID
Sbjct: 1   MSEEKFLKIAEQARADFKDALIDVIHAFGELTLVVERERIVEVLSKLRAEP-YRFHQLID 59

Query: 60  LCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDM 119
           LCG D+  R  RFDVVYH LS   N RLRVK+   E   VP++  +YP ADW+ERE +DM
Sbjct: 60  LCGADYPKRERRFDVVYHLLSLTQNLRLRVKVMTDETVPVPTVRSVYPNADWYEREAFDM 119

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDY 179
           YG+ F G PDLRRILTDYGF GHPLRKDFP+TG VE+ YD++ K+VVY PV+L+QE R +
Sbjct: 120 YGMLFSGQPDLRRILTDYGFSGHPLRKDFPMTGHVEVRYDEEQKRVVYEPVKLVQEFRRF 179

Query: 180 DFLSPWEGVNSLFAKEDSKDDMS 202
           DFLSPWEG + +   ++   + +
Sbjct: 180 DFLSPWEGASYVLPGDEKAANPN 202


>gi|195376229|ref|XP_002046899.1| GJ12236 [Drosophila virilis]
 gi|194154057|gb|EDW69241.1| GJ12236 [Drosophila virilis]
          Length = 267

 Score =  232 bits (592), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 85/198 (42%), Positives = 122/198 (61%), Gaps = 1/198 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAV-NSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
             + D G Y+       V+     S  EL + +    +V +  FL+D     F N++D+ 
Sbjct: 57  TSLSDFGRYVAECLPKYVQKVQLTSGDELEVLIAPEGVVPVLQFLKDHHQAQFTNLVDIA 116

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
           G+D   R NRF+VVY+ LS ++N R+RVK    E   + S+  ++  A+W+ERE+WDMYG
Sbjct: 117 GLDVPCRKNRFEVVYNLLSLRFNSRIRVKTYTDELTPLDSVCEVHKAANWYEREIWDMYG 176

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP R+DFP++G+VEL YDD+ K+VV  P+EL QE R +D 
Sbjct: 177 VFFANHPDLRRILTDYGFEGHPQRRDFPLSGYVELRYDDEKKRVVCEPLELAQEFRKFDL 236

Query: 182 LSPWEGVNSLFAKEDSKD 199
            +PWE   +      + +
Sbjct: 237 SAPWEQFPNFRNANPASE 254


>gi|332259910|ref|XP_003279027.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 3,
           mitochondrial-like [Nomascus leucogenys]
          Length = 266

 Score =  232 bits (592), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 88/196 (44%), Positives = 126/196 (64%), Gaps = 1/196 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +++   G+Y+       V+    S   EL + +    ++ + +FLRD  +  F +++DL 
Sbjct: 58  KQLSAFGEYVAEILPKYVQQVQVSCFNELEVCIHPDGVIPVLTFLRDHTNAQFKSLVDLT 117

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  +R NRF++VY+ LS ++N R+RVK    E   + S V ++  A+W+ERE+WDM+G
Sbjct: 118 AVDVPTRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPIESAVSVFKAANWYEREIWDMFG 177

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP RKDFP++G+VEL YDD+VK+VV  PVEL QE R +D 
Sbjct: 178 VFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDL 237

Query: 182 LSPWEGVNSLFAKEDS 197
            SPWE         +S
Sbjct: 238 NSPWEAFPVYRQPPES 253


>gi|315055913|ref|XP_003177331.1| NADH dehydrogenase iron-sulfur protein 3 [Arthroderma gypseum CBS
           118893]
 gi|311339177|gb|EFQ98379.1| NADH dehydrogenase iron-sulfur protein 3 [Arthroderma gypseum CBS
           118893]
          Length = 291

 Score =  232 bits (591), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 85/200 (42%), Positives = 126/200 (63%), Gaps = 3/200 (1%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
             K+   G Y+++     ++       EL++ V    +V + +FLRD     +  + D+ 
Sbjct: 77  SAKLHTYGQYLISCLPKYIQQFSVWKDELTIYVPPAGVVPVMTFLRDHTAAEYTQVSDIT 136

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VDF +R  RF+VVY+ LS ++N R+RVK    E   VPSI  +Y GA WFEREV+DM+G
Sbjct: 137 AVDFPTREYRFEVVYNLLSVRHNSRIRVKTYADEATPVPSITSLYDGALWFEREVYDMFG 196

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD- 180
           +FF GHPDLRRI+TDYGF+GHPLRKDFP++G+ E+ YD++ K++V  P+EL Q  R+++ 
Sbjct: 197 VFFTGHPDLRRIMTDYGFDGHPLRKDFPLSGYTEIRYDEEKKRIVVEPLELTQAFRNFEG 256

Query: 181 FLSPWEGVNSLFAKEDSKDD 200
             S WEG+      +   D+
Sbjct: 257 GSSAWEGIGHGV--DRKPDN 274


>gi|70991843|ref|XP_750770.1| NADH-ubiquinone oxidoreductase 304 kDa subunit precursor
           [Aspergillus fumigatus Af293]
 gi|66848403|gb|EAL88732.1| NADH-ubiquinone oxidoreductase 304 kDa subunit precursor
           [Aspergillus fumigatus Af293]
 gi|159124332|gb|EDP49450.1| NADH-ubiquinone oxidoreductase 304 kDa subunit precursor
           [Aspergillus fumigatus A1163]
          Length = 334

 Score =  232 bits (591), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 84/189 (44%), Positives = 121/189 (64%), Gaps = 1/189 (0%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
              +   G Y+++     V+       EL++ V    ++ + SFL+      F  I D+ 
Sbjct: 71  TESLHKYGQYVMSCLPKYVQQFSVWKDELTIYVPPTGIIPVMSFLKYHTAAEFTQISDIT 130

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VDF +R  RF+VVY+ LS +YN R+RVK    E   VPS+ G+Y GA W+EREV+D++G
Sbjct: 131 AVDFPTRDQRFEVVYNLLSIRYNSRIRVKTYADEASPVPSVTGLYEGALWYEREVYDLFG 190

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD- 180
           +FF GHPDLRRI+TDYGF+GHPLRKDFP+TG+ EL YD++ K++V  P+EL Q  R+++ 
Sbjct: 191 VFFSGHPDLRRIMTDYGFDGHPLRKDFPLTGYTELRYDEEKKRIVIEPLELTQAFRNFEG 250

Query: 181 FLSPWEGVN 189
             + WE V 
Sbjct: 251 GTTAWEPVG 259


>gi|62898071|dbj|BAD96975.1| NADH dehydrogenase (ubiquinone) Fe-S protein 3, 30kDa
           (NADH-coenzyme Q reductase) variant [Homo sapiens]
          Length = 264

 Score =  232 bits (591), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 87/196 (44%), Positives = 126/196 (64%), Gaps = 1/196 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +++   G+Y+       V+    S   EL + +    ++ + +FLRD  +  F +++DL 
Sbjct: 56  KQLSAFGEYVAEILPKYVQQVQVSCFNELEVCIHPDGVIPVLTFLRDHTNAQFKSLVDLT 115

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  +R NRF++VY+ LS ++N R+RVK    E   + S V ++  A+W+ERE+WDM+G
Sbjct: 116 AVDVPTRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPIESAVSVFKAANWYEREIWDMFG 175

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP +KDFP++G+VEL YDD+VK+VV  PVEL QE R +D 
Sbjct: 176 VFFANHPDLRRILTDYGFEGHPFQKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDL 235

Query: 182 LSPWEGVNSLFAKEDS 197
            SPWE         +S
Sbjct: 236 NSPWEAFPVYRQPPES 251


>gi|258575169|ref|XP_002541766.1| NADH-ubiquinone oxidoreductase 30.4 kDa subunit [Uncinocarpus
           reesii 1704]
 gi|237902032|gb|EEP76433.1| NADH-ubiquinone oxidoreductase 30.4 kDa subunit [Uncinocarpus
           reesii 1704]
          Length = 288

 Score =  232 bits (591), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 81/200 (40%), Positives = 126/200 (63%), Gaps = 3/200 (1%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
            +++   G Y+++     ++       EL++ +    ++ + SFL+D     +  + D+ 
Sbjct: 74  SKELHTYGQYLMSCLPKYIQQFSVWKDELTIYIPPAGVIPVISFLKDHTAAEYKQVSDIT 133

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VDF +R  RF+VVY+ LS ++N R+RVK    E   VPSI  +Y GA W+EREV+D++G
Sbjct: 134 AVDFPTREYRFEVVYNLLSVRHNSRIRVKTYADEATPVPSITSLYDGAVWYEREVYDLFG 193

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD- 180
           +FF GHPDLRRI+TDYGF+GHPLRKDFP+TG+ E+ YD++ K++V  P+EL Q  R+++ 
Sbjct: 194 VFFVGHPDLRRIMTDYGFDGHPLRKDFPLTGYTEIRYDEEKKRIVVEPLELTQAFRNFEG 253

Query: 181 FLSPWEGVNSLFAKEDSKDD 200
             S WE V      +   D+
Sbjct: 254 GTSAWEQVG--QGTDRKPDN 271


>gi|157817227|ref|NP_001099959.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 3,
           mitochondrial [Rattus norvegicus]
 gi|149022595|gb|EDL79489.1| NADH dehydrogenase (ubiquinone) Fe-S protein 3 (predicted), isoform
           CRA_c [Rattus norvegicus]
          Length = 264

 Score =  231 bits (590), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 88/195 (45%), Positives = 126/195 (64%), Gaps = 1/195 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +++   G+Y+       V+    +   EL + +    ++   +FL+D  +  F ++ DL 
Sbjct: 56  KRLSAFGEYVAEILPKYVQQVQVTCFDELEICIHPDGVIPTITFLKDHTNAQFKSLADLT 115

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  +R NRF++VY+ LS ++N R+RVK    E  ++ SIV ++  A+W+EREVWDM+G
Sbjct: 116 AVDVPTRQNRFEIVYNLLSLRFNSRIRVKTYADELTAIDSIVSVHIAANWYEREVWDMFG 175

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP RKDFP+TG+VEL YDD+VK+VV  PVEL QE R +D 
Sbjct: 176 VFFFNHPDLRRILTDYGFEGHPFRKDFPLTGYVELRYDDEVKRVVAEPVELAQEFRKFDL 235

Query: 182 LSPWEGVNSLFAKED 196
            SPWE   +     +
Sbjct: 236 NSPWEAFPAYRQPPE 250


>gi|12832533|dbj|BAB22149.1| unnamed protein product [Mus musculus]
          Length = 263

 Score =  231 bits (590), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 91/196 (46%), Positives = 127/196 (64%), Gaps = 1/196 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +++   G+Y+       V+    S + EL + +    ++   +FLRD  +  F ++ DL 
Sbjct: 55  KQLSAFGEYVAEILPKYVQQVQVSCLDELEICIHPDGVIPTLTFLRDHTNAQFKSLADLT 114

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  +R NRF++VY+ LS ++N R+RVK    E   + SIV ++  A+W+EREVWDM+G
Sbjct: 115 AVDVPTRQNRFEIVYNLLSLRFNSRIRVKTYADELTPIDSIVSVHIAANWYEREVWDMFG 174

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP RKDFP+TG+VEL YDD+VK+VV  PVEL QE R +D 
Sbjct: 175 VFFFNHPDLRRILTDYGFEGHPFRKDFPLTGYVELRYDDEVKRVVAEPVELAQEFRKFDL 234

Query: 182 LSPWEGVNSLFAKEDS 197
            SPWE   +     +S
Sbjct: 235 NSPWEAFPAYRQPPES 250


>gi|320164785|gb|EFW41684.1| mitochondrial complex I subunit NDUFS3 [Capsaspora owczarzaki ATCC
           30864]
          Length = 272

 Score =  231 bits (590), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 89/185 (48%), Positives = 123/185 (66%), Gaps = 1/185 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNSV-GELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +++E+ G Y+V+     V+        EL + V    ++ +  FLRD  +  F  ++D+ 
Sbjct: 78  KQLEEYGQYLVDVLPKFVQATQVQHTNELEVLVAPEGVLPVLQFLRDHTNAQFKQLLDVA 137

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
           GVD+  R+NRF+VVY+ LS ++N R+RVK    E   V S   +Y  A WFERE WD+YG
Sbjct: 138 GVDYPKRTNRFEVVYNLLSLRFNARIRVKTYTDEVTPVESATCLYSSATWFEREAWDLYG 197

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           I F  HPDLRRILTDYGFEGHP+RKDFP+TG+VE  YDD++K+VV  P+E+ QE R ++F
Sbjct: 198 ILFSNHPDLRRILTDYGFEGHPMRKDFPLTGYVEARYDDELKRVVVEPLEMTQEMRRFEF 257

Query: 182 LSPWE 186
            SPWE
Sbjct: 258 QSPWE 262


>gi|297688775|ref|XP_002821850.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 3,
           mitochondrial-like [Pongo abelii]
          Length = 269

 Score =  231 bits (590), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 88/196 (44%), Positives = 126/196 (64%), Gaps = 1/196 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +++   G+Y+       V+    S   EL + +    ++ + +FLRD  +  F +++DL 
Sbjct: 61  QQLSAFGEYVAEILPKYVQQVQVSCFNELEVCIHPDGVIPVLTFLRDHTNAQFKSLVDLT 120

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  +R NRF++VY+ LS ++N R+RVK    E   + S V ++  A+W+ERE+WDM+G
Sbjct: 121 AVDVPTRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPIESAVSVFKAANWYEREIWDMFG 180

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP RKDFP++G+VEL YDD+VK+VV  PVEL QE R +D 
Sbjct: 181 VFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDL 240

Query: 182 LSPWEGVNSLFAKEDS 197
            SPWE         +S
Sbjct: 241 NSPWEAFPVYRQPPES 256


>gi|20071222|gb|AAH27270.1| NADH dehydrogenase (ubiquinone) Fe-S protein 3 [Mus musculus]
          Length = 263

 Score =  231 bits (590), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 91/196 (46%), Positives = 127/196 (64%), Gaps = 1/196 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +++   G+Y+       V+    S + EL + +    ++   +FLRD  +  F ++ DL 
Sbjct: 55  KQLSAFGEYVAEILPKYVQQVQVSCLDELEICIHPDGVIPTLTFLRDHTNAQFKSLADLT 114

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  +R NRF++VY+ LS ++N R+RVK    E   + SIV ++  A+W+EREVWDM+G
Sbjct: 115 AVDVPTRQNRFEIVYNLLSLRFNSRIRVKTYADELTPIDSIVSVHIAANWYEREVWDMFG 174

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP RKDFP+TG+VEL YDD+VK+VV  PVEL QE R +D 
Sbjct: 175 VFFFNHPDLRRILTDYGFEGHPFRKDFPLTGYVELRYDDEVKRVVAEPVELAQEFRKFDL 234

Query: 182 LSPWEGVNSLFAKEDS 197
            SPWE   +     +S
Sbjct: 235 NSPWEAFPAYRQPPES 250


>gi|255725898|ref|XP_002547875.1| NADH-ubiquinone oxidoreductase 30.4 kDa subunit, mitochondrial
           precursor [Candida tropicalis MYA-3404]
 gi|240133799|gb|EER33354.1| NADH-ubiquinone oxidoreductase 30.4 kDa subunit, mitochondrial
           precursor [Candida tropicalis MYA-3404]
          Length = 277

 Score =  231 bits (590), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 85/190 (44%), Positives = 124/190 (65%), Gaps = 1/190 (0%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           + ++   G YI++     ++       EL++ V    +  +  FLRD   C F +++D+ 
Sbjct: 63  IEELHKFGTYIMSCLPKYIQQFSVWKDELTIYVAPSAIRPVMLFLRDHTSCQFKSVMDVT 122

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
             D+ SR+NRFDVVY+ LS ++N R+RVK   +E   VPSI   + GA+W+ERE +D++G
Sbjct: 123 AADYPSRTNRFDVVYNMLSVRHNSRIRVKTYASETSPVPSITPFFNGANWYERETYDLFG 182

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF GHPDLRRI+TDYGFEGHPLRKDFP TG+ E+ YD++ K+V+Y P+EL Q  R++  
Sbjct: 183 VFFVGHPDLRRIMTDYGFEGHPLRKDFPTTGYTEVRYDEEKKRVIYEPLELTQAWRNFTV 242

Query: 182 LSP-WEGVNS 190
            S  WE V  
Sbjct: 243 GSSVWEPVGE 252


>gi|326483818|gb|EGE07828.1| NADH-ubiquinone oxidoreductase 30.4 kDa subunit [Trichophyton
           equinum CBS 127.97]
          Length = 291

 Score =  231 bits (590), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 85/200 (42%), Positives = 126/200 (63%), Gaps = 3/200 (1%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
             K+   G Y+++     ++       EL++ V    +V + +FLRD     +  + D+ 
Sbjct: 77  SAKLHTYGQYLISCLPKYIQQFSVWKDELTIYVPPAGVVPVMTFLRDHTAAEYTQVSDIT 136

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VDF +R  RF+VVY+ LS ++N R+RVK    E   VPSI  +Y GA WFEREV+DM+G
Sbjct: 137 AVDFPTREYRFEVVYNLLSVRHNSRIRVKTYADEATPVPSITSLYDGALWFEREVYDMFG 196

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD- 180
           +FF GHPDLRRI+TDYGF+GHPLRKDFP++G+ E+ YD++ K++V  P+EL Q  R+++ 
Sbjct: 197 VFFTGHPDLRRIMTDYGFDGHPLRKDFPLSGYTEIRYDEEKKRIVVEPLELTQAFRNFEG 256

Query: 181 FLSPWEGVNSLFAKEDSKDD 200
             S WEG+      +   D+
Sbjct: 257 GSSAWEGIG--QGVDRKPDN 274


>gi|51592063|ref|NP_001003921.1| NADH dehydrogenase (ubiquinone) Fe-S protein 3 [Xenopus (Silurana)
           tropicalis]
 gi|51261601|gb|AAH79960.1| NADH dehydrogenase (ubiquinone) Fe-S protein 3, 30kDa
           (NADH-coenzyme Q reductase) [Xenopus (Silurana)
           tropicalis]
 gi|68085134|gb|AAH62521.2| NADH dehydrogenase (ubiquinone) Fe-S protein 3, 30kDa
           (NADH-coenzyme Q reductase) [Xenopus (Silurana)
           tropicalis]
          Length = 250

 Score =  231 bits (589), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 88/198 (44%), Positives = 127/198 (64%), Gaps = 1/198 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
            ++   G+Y+       V+    +  GEL + V    ++ + +FLRD  +  F ++ DL 
Sbjct: 46  NQLSAFGEYVAEILPKYVQQVQVTCNGELEVMVHPDGVIPVLTFLRDHTNAQFKSLADLT 105

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  +++NRF++VY+ LS ++N R+RV     E   V S V ++  A+W+EREVWDMYG
Sbjct: 106 AVDVPAKTNRFEIVYNLLSLRFNTRMRVMTYTDELTPVESAVPVFEAANWYEREVWDMYG 165

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP RKDFP++G+VE+ YDD+VK+VV  PV+L QE R +D 
Sbjct: 166 VFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEVKRVVAEPVQLSQEFRKFDL 225

Query: 182 LSPWEGVNSLFAKEDSKD 199
            SPWE   +   + +S  
Sbjct: 226 SSPWEAFPAHRQQPESPK 243


>gi|260942471|ref|XP_002615534.1| hypothetical protein CLUG_04416 [Clavispora lusitaniae ATCC 42720]
 gi|238850824|gb|EEQ40288.1| hypothetical protein CLUG_04416 [Clavispora lusitaniae ATCC 42720]
          Length = 282

 Score =  231 bits (589), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 88/189 (46%), Positives = 125/189 (66%), Gaps = 1/189 (0%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
             ++   G YI++     ++       EL++ V    +  +  +L++     F   +D+ 
Sbjct: 69  SEELHKFGTYIMSCMPKYIQQFSVWKDELTIYVAPSAIRPVMVYLKNHTPAQFKACMDIT 128

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
             D+ SR+NRFDVVY+ LS ++N R+RVK   +E  SVPS+V IY GA+W+EREV+DM+G
Sbjct: 129 AADYPSRANRFDVVYNLLSVRHNSRIRVKTYASETSSVPSVVPIYQGANWYEREVYDMFG 188

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FFEGHPDLRRI+TDYGFEGHPLRKDFP TG+ E+ YD++ K+VVY P+EL Q  R++  
Sbjct: 189 VFFEGHPDLRRIMTDYGFEGHPLRKDFPTTGYTEVRYDEEKKRVVYEPLELTQAWRNFTV 248

Query: 182 LSP-WEGVN 189
            S  WE V 
Sbjct: 249 GSSVWEQVG 257


>gi|311247859|ref|XP_003122849.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 3,
           mitochondrial-like isoform 1 [Sus scrofa]
          Length = 264

 Score =  231 bits (589), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 91/198 (45%), Positives = 125/198 (63%), Gaps = 2/198 (1%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +++   G Y+       V+    S   EL + +    ++ + +FLRD  +  F ++ DL 
Sbjct: 56  KQLSAFGQYVAEILPKYVQQVQVSCFNELEIFIHPDGVIPVLTFLRDHTNAQFKSLADLT 115

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  +R NRF++VY+ LS ++N R+RVK    E   + S V +Y  A+W+ERE+WDM+G
Sbjct: 116 AVDVPTRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPIESSVTVYKAANWYEREIWDMFG 175

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP RKDFP++G+VEL YDD+VK+VV  PVEL QE R +D 
Sbjct: 176 VFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDL 235

Query: 182 LSPWEGVN-SLFAKEDSK 198
            SPWE         ED K
Sbjct: 236 NSPWEAFPAYRQPPEDLK 253


>gi|327306826|ref|XP_003238104.1| NADH-ubiquinone oxidoreductase subunit [Trichophyton rubrum CBS
           118892]
 gi|326458360|gb|EGD83813.1| NADH-ubiquinone oxidoreductase subunit [Trichophyton rubrum CBS
           118892]
          Length = 291

 Score =  231 bits (589), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 84/200 (42%), Positives = 126/200 (63%), Gaps = 3/200 (1%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
             K+   G Y+++     ++       EL++ +    +V + +FLRD     +  + D+ 
Sbjct: 77  SAKLHTYGQYLISCLPKYIQQFSVWKDELTIYIPPAGVVPVMTFLRDHTAAEYTQVSDIT 136

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VDF +R  RF+VVY+ LS ++N R+RVK    E   VPSI  +Y GA WFEREV+DM+G
Sbjct: 137 AVDFPTREYRFEVVYNLLSVRHNSRIRVKTYADEATPVPSITSLYDGALWFEREVYDMFG 196

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD- 180
           +FF GHPDLRRI+TDYGF+GHPLRKDFP++G+ E+ YD++ K++V  P+EL Q  R+++ 
Sbjct: 197 VFFTGHPDLRRIMTDYGFDGHPLRKDFPLSGYTEIRYDEEKKRIVVEPLELTQAFRNFEG 256

Query: 181 FLSPWEGVNSLFAKEDSKDD 200
             S WEG+      +   D+
Sbjct: 257 GSSAWEGIG--QGVDRKPDN 274


>gi|301772554|ref|XP_002921693.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 3,
           mitochondrial-like [Ailuropoda melanoleuca]
          Length = 265

 Score =  231 bits (589), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 89/196 (45%), Positives = 125/196 (63%), Gaps = 1/196 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +++   G+Y+       V+    S   EL + +    ++ +  FLRD  +  F ++ DL 
Sbjct: 57  KQLSAFGEYVAEILPKYVQQVQVSCFNELEICIHPDGVIPVLIFLRDHTNAQFKSLADLT 116

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  +R NRF++VY+ LS ++N R+RVK    E   + S V +Y  A+W+ERE+WDM+G
Sbjct: 117 AVDIPTRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPIESTVSVYKAANWYEREIWDMFG 176

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP RKDFP++G+VEL YDD+VK+VV  PVEL QE R +D 
Sbjct: 177 VFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDL 236

Query: 182 LSPWEGVNSLFAKEDS 197
            SPWE   +     +S
Sbjct: 237 NSPWEAFPAYRQPPES 252


>gi|328858908|gb|EGG08019.1| hypothetical protein MELLADRAFT_35287 [Melampsora larici-populina
           98AG31]
          Length = 224

 Score =  231 bits (589), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 86/190 (45%), Positives = 122/190 (64%), Gaps = 1/190 (0%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           +   + D G Y+ +     ++       EL+L      +V +  FLRD   C +  ++D+
Sbjct: 21  ISDSLHDYGTYLTSCIPKFIQQFSVYKDELTLYTSPDGIVPVLGFLRDHTQCQYKQLMDI 80

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
            G D+ +R  RF++VYH LS KY  R+RVK    E   VPS  G++  ADW+EREV+DMY
Sbjct: 81  SGADYPTRPKRFEIVYHLLSLKYASRIRVKTYADEVSPVPSATGLFRSADWYEREVYDMY 140

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           G+FF+ HPDLRRILTDYGFEG+PLRKDFP+TG+ E+ YD++ K+VVY P++L Q  R+++
Sbjct: 141 GVFFQNHPDLRRILTDYGFEGYPLRKDFPLTGYTEVRYDEEKKRVVYEPLQLSQAFRNFE 200

Query: 181 -FLSPWEGVN 189
              SPWE   
Sbjct: 201 GANSPWEQTG 210


>gi|296479642|gb|DAA21757.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 3,
           mitochondrial precursor [Bos taurus]
          Length = 251

 Score =  231 bits (589), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 88/188 (46%), Positives = 123/188 (65%), Gaps = 1/188 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +++   G+Y+       V+    S   EL + +    ++ + +FLRD  +  F ++ DL 
Sbjct: 58  KQLSAFGEYVAEILPKYVQQVQVSCFNELEICIHPDGVIPVLTFLRDHSNAQFKSLADLT 117

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  +R NRF++VY+ LS ++N R+RVK    E   + S V +Y  A+W+ERE+WDM+G
Sbjct: 118 AVDIPTRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPIESSVPVYKAANWYEREIWDMFG 177

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP RKDFP++G+VEL YDD+VK+VV  PVEL QE R +D 
Sbjct: 178 VFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDL 237

Query: 182 LSPWEGVN 189
            SPWE   
Sbjct: 238 NSPWEAFP 245


>gi|327259697|ref|XP_003214672.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 3,
           mitochondrial-like [Anolis carolinensis]
          Length = 268

 Score =  231 bits (588), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 88/207 (42%), Positives = 127/207 (61%), Gaps = 10/207 (4%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +++   G+Y+       V+    +   EL + +    ++ + +FL+D  +  F ++ DL 
Sbjct: 60  KQLSAFGEYVAEILPKYVQQVQVTCFNELEILIHPDGVIPVLTFLKDHTNAQFKSLADLT 119

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  SR  RF++VY+ LS +YN R+RVK    E   + S+V ++  ++W+EREVWDMYG
Sbjct: 120 AVDVPSRQYRFEIVYNLLSLRYNSRIRVKTYTDELTPIDSVVPVHQASNWYEREVWDMYG 179

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP RKDFP++G+VE+ YDD+VK+VV  PVEL QE R +D 
Sbjct: 180 VFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEVKRVVAEPVELAQEFRKFDL 239

Query: 182 LSPWEGVN---------SLFAKEDSKD 199
            SPWE             +   E  +D
Sbjct: 240 NSPWETFPAYRDAPETLKIEPGEKKED 266


>gi|149245542|ref|XP_001527248.1| NADH-ubiquinone oxidoreductase subunit 9 [Lodderomyces elongisporus
           NRRL YB-4239]
 gi|146449642|gb|EDK43898.1| NADH-ubiquinone oxidoreductase subunit 9 [Lodderomyces elongisporus
           NRRL YB-4239]
          Length = 304

 Score =  231 bits (588), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 83/190 (43%), Positives = 123/190 (64%), Gaps = 1/190 (0%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           + ++   G Y+++     ++       EL++ V    +  +  FL++     F + +D+ 
Sbjct: 88  IEELHKFGTYLMSCLPKYIQQFSVWKDELTIYVAPSAIQIVSLFLKNHTSAQFKSCMDVT 147

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
             D+ SR+NRFDVVY+ LS ++N R+RVK    E  +VPS+  IY GA+W+ERE +D++G
Sbjct: 148 AADYPSRTNRFDVVYNLLSVRHNSRIRVKTYANETSAVPSVTSIYHGANWYERETYDLFG 207

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF GHPDLRRI+TDYGFEGHPLRKDFP TG+ E+ YD++ K+VVY P+EL Q  R++  
Sbjct: 208 VFFTGHPDLRRIMTDYGFEGHPLRKDFPTTGYTEVRYDEEKKRVVYEPLELTQAWRNFTV 267

Query: 182 LSP-WEGVNS 190
            S  WE V  
Sbjct: 268 GSSVWEQVGE 277


>gi|195587367|ref|XP_002083436.1| GD13354 [Drosophila simulans]
 gi|194195445|gb|EDX09021.1| GD13354 [Drosophila simulans]
          Length = 265

 Score =  231 bits (588), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 86/196 (43%), Positives = 120/196 (61%), Gaps = 1/196 (0%)

Query: 5   IEDLGDYIVNSFSGSVRFAV-NSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGV 63
           + D G Y+       V+     +  EL + +    +V +  FL+D     F N++D+ GV
Sbjct: 60  LSDFGRYVAECLPKYVQKVQLTAGDELEVLIAPEGVVPVLQFLKDHHQAQFTNLVDIAGV 119

Query: 64  DFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIF 123
           D   R NRF+VVY+ LS +YN R+RVK    E   + S   ++  A+W+ERE+WDMYG+F
Sbjct: 120 DVPCRKNRFEVVYNLLSLRYNSRIRVKTYTDELTPLDSACEVHKAANWYEREIWDMYGVF 179

Query: 124 FEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLS 183
           F  HPDLRRILTDYGFEGHP R+DFP++G+VEL YDD+ K+VV  P+EL QE R +D  +
Sbjct: 180 FANHPDLRRILTDYGFEGHPQRRDFPLSGYVELRYDDEKKRVVCEPLELAQEFRKFDLSA 239

Query: 184 PWEGVNSLFAKEDSKD 199
           PWE   +        +
Sbjct: 240 PWEQFPNFRNANPPAE 255


>gi|89272859|emb|CAJ82146.1| NADH dehydrogenase (ubiquinone) Fe-S protein 3 [Xenopus (Silurana)
           tropicalis]
          Length = 250

 Score =  231 bits (588), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 88/198 (44%), Positives = 127/198 (64%), Gaps = 1/198 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
            ++   G+Y+       V+    +  GEL + V    ++ + +FLRD  +  F ++ DL 
Sbjct: 46  NQLSAFGEYVAEILPKYVQQVQVTCNGELEVMVHPDGVIPVLTFLRDHTNAQFKSLADLT 105

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  +++NRF++VY+ LS ++N R+RV     E   V S V ++  A+W+EREVWDMYG
Sbjct: 106 AVDVPAKTNRFEIVYNLLSLRFNTRMRVMTYTDELTPVESAVPVFEAANWYEREVWDMYG 165

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP RKDFP++G+VE+ YDD+VK+VV  PV+L QE R +D 
Sbjct: 166 VFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEVKRVVAEPVQLSQEFRKFDL 225

Query: 182 LSPWEGVNSLFAKEDSKD 199
            SPWE   +   + +S  
Sbjct: 226 SSPWEAFPAHRQQPESPK 243


>gi|195337045|ref|XP_002035143.1| GM14080 [Drosophila sechellia]
 gi|194128236|gb|EDW50279.1| GM14080 [Drosophila sechellia]
          Length = 265

 Score =  230 bits (587), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 86/196 (43%), Positives = 120/196 (61%), Gaps = 1/196 (0%)

Query: 5   IEDLGDYIVNSFSGSVRFAV-NSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGV 63
           + D G Y+       V+     +  EL + +    +V +  FL+D     F N++D+ GV
Sbjct: 60  LSDFGRYVAECLPKYVQKVQLTAGDELEVLIAPEGVVPVLQFLKDHHQAQFTNLVDIAGV 119

Query: 64  DFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIF 123
           D   R NRF+VVY+ LS +YN R+RVK    E   + S   ++  A+W+ERE+WDMYG+F
Sbjct: 120 DVPCRKNRFEVVYNLLSLRYNSRIRVKTYTDELTPLDSACEVHKAANWYEREIWDMYGVF 179

Query: 124 FEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLS 183
           F  HPDLRRILTDYGFEGHP R+DFP++G+VEL YDD+ K+VV  P+EL QE R +D  +
Sbjct: 180 FANHPDLRRILTDYGFEGHPQRRDFPLSGYVELRYDDEKKRVVCEPLELAQEFRKFDLSA 239

Query: 184 PWEGVNSLFAKEDSKD 199
           PWE   +        +
Sbjct: 240 PWEQFPNFRNANPPAE 255


>gi|226437575|ref|NP_001139804.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 3,
           mitochondrial precursor [Gallus gallus]
          Length = 257

 Score =  230 bits (587), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 88/195 (45%), Positives = 125/195 (64%), Gaps = 1/195 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +++   G+Y+       ++    +   EL L +    ++ + +FLRD  +  F ++ DL 
Sbjct: 49  KQLCAFGEYVAEILPKYIQQVQVTCFNELELLIHPDGIIPVLTFLRDHTNAQFKSLADLT 108

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  SR  RF++VY+ LS ++N R+RVK    E   + S V ++  A+W+EREVWDMYG
Sbjct: 109 AVDVPSRQYRFEIVYNLLSLRFNSRIRVKTYTDELTPIDSAVSVHKAANWYEREVWDMYG 168

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP RKDFP++G+VE+ YDD+VK+VV  PVEL QE R +D 
Sbjct: 169 VFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEVKRVVAEPVELSQEFRKFDL 228

Query: 182 LSPWEGVNSLFAKED 196
            SPWE   +  A  +
Sbjct: 229 NSPWEAFPAYRAPPE 243


>gi|332185776|ref|ZP_08387523.1| NADH-ubiquinone oxidoreductase chain C [Sphingomonas sp. S17]
 gi|332014134|gb|EGI56192.1| NADH-ubiquinone oxidoreductase chain C [Sphingomonas sp. S17]
          Length = 265

 Score =  230 bits (587), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 86/185 (46%), Positives = 118/185 (63%)

Query: 13  VNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRF 72
             +    +  A   VGE++L VD  +LV     LRD     +  ++++ GVD+  R  RF
Sbjct: 6   RAALGPWLVDAREHVGEVALVVDRVNLVPAMIALRDTKGLEYQQLMEIAGVDYPERDERF 65

Query: 73  DVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRR 132
           +VVY  LS   N RL V +   E K VPS+ G++P A W EREV+D+YG+ F G+ DLRR
Sbjct: 66  EVVYCLLSLTRNHRLHVHVCTDEDKPVPSVTGLWPVAGWLEREVYDLYGVLFSGNSDLRR 125

Query: 133 ILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEGVNSLF 192
           ILTDYGF GHPLRKDFP+TG+ EL Y ++ K+VVY PV+L Q+ R++DF SPWEG   + 
Sbjct: 126 ILTDYGFRGHPLRKDFPLTGYTELRYSEEEKRVVYEPVKLAQDFRNFDFQSPWEGAEYVL 185

Query: 193 AKEDS 197
             ++ 
Sbjct: 186 PGDEK 190


>gi|224051044|ref|XP_002198697.1| PREDICTED: NADH dehydrogenase (ubiquinone) Fe-S protein 3, 30kDa
           (NADH-coenzyme Q reductase) [Taeniopygia guttata]
          Length = 278

 Score =  230 bits (587), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 87/195 (44%), Positives = 124/195 (63%), Gaps = 1/195 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +++   G+Y+       ++    +   EL L +    ++ + +FLRD  +  F ++ DL 
Sbjct: 70  KQLCAFGEYVAEILPKYIQQVQVTCFNELELLIHPDGIIPVLTFLRDHTNAQFKSLADLT 129

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  SR  RF++VY+ LS ++N R+RVK    E   + S V ++  A+W+EREVWDMYG
Sbjct: 130 AVDVPSRQYRFEIVYNLLSLRFNSRIRVKTYTDELTPIDSAVPVHKAANWYEREVWDMYG 189

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP RKDFP++G+VE+ YDD+VK+VV  PVEL QE R +D 
Sbjct: 190 VFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEVKRVVAEPVELAQEFRKFDL 249

Query: 182 LSPWEGVNSLFAKED 196
            SPWE   +     +
Sbjct: 250 NSPWEAFPAYRPPPE 264


>gi|167516306|ref|XP_001742494.1| NADH dehydrogenase Fe S [Monosiga brevicollis MX1]
 gi|163779118|gb|EDQ92732.1| NADH dehydrogenase Fe S [Monosiga brevicollis MX1]
          Length = 206

 Score =  230 bits (587), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 94/188 (50%), Positives = 122/188 (64%), Gaps = 1/188 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVN-SVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
            ++E LG +I       V+ A   +  EL L +    +  + +FLRD   C F N+ DLC
Sbjct: 8   ERLEKLGQHIAEMLPRYVQVAQVTAHDELELLIAPSGVKPVLTFLRDHTACQFKNLSDLC 67

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD   R  RF+VVY+ LS   N R+RV+    E   V SIV I+  ADW+ERE WDMYG
Sbjct: 68  AVDVPRREKRFEVVYNLLSVHLNERIRVRTYCDELTPVDSIVDIHMAADWYEREAWDMYG 127

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           ++F GHPDLRRILTDYGFEGHPLRKDFP++GFVE+ YD+ VK+VV  P+EL QE R ++ 
Sbjct: 128 VYFLGHPDLRRILTDYGFEGHPLRKDFPLSGFVEVRYDEDVKRVVCEPLELAQEFRKFEL 187

Query: 182 LSPWEGVN 189
            SPW+ + 
Sbjct: 188 QSPWQQIP 195


>gi|195012914|ref|XP_001983773.1| GH16082 [Drosophila grimshawi]
 gi|193897255|gb|EDV96121.1| GH16082 [Drosophila grimshawi]
          Length = 261

 Score =  230 bits (586), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 83/198 (41%), Positives = 120/198 (60%), Gaps = 1/198 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAV-NSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
             + D G Y+       V+     S  EL + +    +V +  FL+D     F N++D+ 
Sbjct: 57  TSLSDFGRYVAECMPKYVQKVQLTSGDELEILIAPEGIVPVLQFLKDHHQAQFTNLVDIA 116

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
           G+D   R +RF+V+Y+ LS ++N R+RVK    E   + S   ++  A+W+ERE+WDMYG
Sbjct: 117 GMDVPCRQHRFEVIYNLLSLRFNARIRVKTYTDELTPLDSACEVHKAANWYEREIWDMYG 176

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP R+DFP++G+VEL YDD+ K+VV  P+EL QE R +D 
Sbjct: 177 VFFANHPDLRRILTDYGFEGHPQRRDFPLSGYVELRYDDEKKRVVCEPLELAQEFRKFDL 236

Query: 182 LSPWEGVNSLFAKEDSKD 199
            +PWE   +        +
Sbjct: 237 SAPWEQFPNFRNANPPAE 254


>gi|121699646|ref|XP_001268091.1| NADH-ubiquinone oxidoreductase 304 kDa subunit precursor
           [Aspergillus clavatus NRRL 1]
 gi|119396233|gb|EAW06665.1| NADH-ubiquinone oxidoreductase 304 kDa subunit precursor
           [Aspergillus clavatus NRRL 1]
          Length = 286

 Score =  229 bits (585), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 82/200 (41%), Positives = 122/200 (61%), Gaps = 4/200 (2%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
              +   G Y+++     V+       EL++ V    ++ + +FL+      +  I D+ 
Sbjct: 72  AEGLHKYGQYVMSCLPKYVQQFSVWKDELTIYVPPSGIIPVMTFLKYHTAAEYTQISDIT 131

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VDF +R  RF+VVY+ LS +YN R+RVK    E   VPS+ G++ GA W+EREV+DM+G
Sbjct: 132 AVDFPTRDQRFEVVYNMLSVRYNSRIRVKTYADEASPVPSVTGLFEGALWYEREVYDMFG 191

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRI+TDYGF+GHPLRKDFP+TG+ E+ YD++ K++V  P+EL Q  R+++ 
Sbjct: 192 VFFSNHPDLRRIMTDYGFDGHPLRKDFPLTGYTEVRYDEEKKRIVIEPLELTQAFRNFEG 251

Query: 182 LS-PWEGVNSLFAKEDSKDD 200
            +  WE V       D   D
Sbjct: 252 GTVAWEPVG---PGNDRTPD 268


>gi|291243572|ref|XP_002741672.1| PREDICTED: NADH dehydrogenase iron-sulfur protein 3,
           mitochondrial-like [Saccoglossus kowalevskii]
          Length = 257

 Score =  229 bits (584), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 90/184 (48%), Positives = 126/184 (68%), Gaps = 1/184 (0%)

Query: 4   KIEDLGDYIVNSFSGSVRFAVNSV-GELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
            + D G Y+ +     ++    +   EL L +    +V + +FL+D  +C F NI D+  
Sbjct: 52  TLSDFGRYVADCLPKYIQLVQVTHYNELELMIHPEGVVPVMTFLKDHHNCQFKNISDITA 111

Query: 63  VDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGI 122
           +D  +R NRF+++Y+ LS +YN R+RVK    E   + SIV ++ GADW+EREVWDMYG+
Sbjct: 112 IDVPTRENRFEIIYNILSLRYNSRIRVKTYTDELTPIDSIVSVHKGADWYEREVWDMYGV 171

Query: 123 FFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFL 182
           FF  HPDLRRILTDYGFEGHPLRKDFP++G+VE+ YDD+VK++V  P+EL QE R +D  
Sbjct: 172 FFANHPDLRRILTDYGFEGHPLRKDFPLSGYVEVRYDDEVKRIVVEPLELSQEFRKFDLS 231

Query: 183 SPWE 186
           +PWE
Sbjct: 232 TPWE 235


>gi|310799531|gb|EFQ34424.1| NADH dehydrogenase [Glomerella graminicola M1.001]
          Length = 286

 Score =  229 bits (584), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 80/201 (39%), Positives = 123/201 (61%), Gaps = 4/201 (1%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
              +   G +I+      V+       EL++ V    ++ + +FL+ +    F  I D+ 
Sbjct: 72  AENLHKYGSWIMGCLPKYVQQISVWKDELTIYVSPSGIIPIMTFLKYNTSAEFTQISDIT 131

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD+ +R  RF+V+Y+ LS ++N R+RVK    E   VPS+  ++ GA+W+EREV+D++G
Sbjct: 132 AVDYPTRDQRFEVIYNLLSVRHNSRIRVKTYADEASPVPSVTPLFDGANWYEREVYDLFG 191

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD- 180
           +FF  HPDLRRI+TDYGFEGHPLRKDFP+TG+ E+ YD++ K++V  P+EL Q  R+++ 
Sbjct: 192 VFFTDHPDLRRIMTDYGFEGHPLRKDFPLTGYTEIRYDEEKKRIVTEPLELTQAFRNFEG 251

Query: 181 FLSPWEGVNSLFAKEDSKDDM 201
             S WE V       D + D 
Sbjct: 252 GSSAWEQVG---PGTDRRPDT 269


>gi|149022594|gb|EDL79488.1| NADH dehydrogenase (ubiquinone) Fe-S protein 3 (predicted), isoform
           CRA_b [Rattus norvegicus]
          Length = 299

 Score =  229 bits (584), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 88/195 (45%), Positives = 126/195 (64%), Gaps = 1/195 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +++   G+Y+       V+    +   EL + +    ++   +FL+D  +  F ++ DL 
Sbjct: 91  KRLSAFGEYVAEILPKYVQQVQVTCFDELEICIHPDGVIPTITFLKDHTNAQFKSLADLT 150

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  +R NRF++VY+ LS ++N R+RVK    E  ++ SIV ++  A+W+EREVWDM+G
Sbjct: 151 AVDVPTRQNRFEIVYNLLSLRFNSRIRVKTYADELTAIDSIVSVHIAANWYEREVWDMFG 210

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP RKDFP+TG+VEL YDD+VK+VV  PVEL QE R +D 
Sbjct: 211 VFFFNHPDLRRILTDYGFEGHPFRKDFPLTGYVELRYDDEVKRVVAEPVELAQEFRKFDL 270

Query: 182 LSPWEGVNSLFAKED 196
            SPWE   +     +
Sbjct: 271 NSPWEAFPAYRQPPE 285


>gi|312221820|emb|CBY01760.1| similar to NADH-ubiquinone oxidoreductase 30.4 kDa subunit
           [Leptosphaeria maculans]
          Length = 289

 Score =  229 bits (583), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 79/200 (39%), Positives = 124/200 (62%), Gaps = 4/200 (2%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
              +   G Y+++     ++       EL++ +    ++   +FL+      +  I D+ 
Sbjct: 74  SEALHKYGQYLMSCLPKYIQQFSVWKDELTIYIPPSGVIPTFTFLKYHTAAEYTQITDIT 133

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD+ ++  RF+VVY+ LS ++N RLRVK    E   VPS+  +Y GA+W+EREV+D++G
Sbjct: 134 AVDYPTKDQRFEVVYNMLSIRHNSRLRVKTYADEATPVPSLCDLYDGANWYEREVYDLFG 193

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDY-D 180
           +FF GHPDLRRI+TDYGF+GHPLRKDFP+TG+ E+ YD++ K++V  P+E+ Q  R++  
Sbjct: 194 VFFVGHPDLRRIMTDYGFDGHPLRKDFPMTGYTEIRYDEEKKRIVQEPLEMTQAFRNFRG 253

Query: 181 FLSPWEGVNSLFAKEDSKDD 200
             S WE V      +D+K D
Sbjct: 254 GSSAWEQVG---PGDDAKPD 270


>gi|319405696|emb|CBI79319.1| NADH dehydrogenase I chain C [Bartonella sp. AR 15-3]
          Length = 202

 Score =  229 bits (583), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 100/191 (52%), Positives = 134/191 (70%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M + + +L +Y+ ++    +  ++   GEL++      +  +  F+RDD  C F++IID+
Sbjct: 1   MSKTLVELSNYLKDNLGDKIEESIFEFGELTIVSRLDAITDVLMFVRDDTRCQFISIIDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
            GVD+ SR  RFDV Y  LSP+YN RLR+K+   E  +V S   IYPGA+W+ERE +DMY
Sbjct: 61  SGVDYPSREKRFDVSYQLLSPRYNLRLRIKVRTDENVAVASACSIYPGAEWYEREAYDMY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F GHPDLRRILTDYGFEGHPLRKDFPVTGFVE  YD++ K+V+Y P+ L QE R++D
Sbjct: 121 GILFSGHPDLRRILTDYGFEGHPLRKDFPVTGFVECRYDNETKRVIYEPIILRQEMRNFD 180

Query: 181 FLSPWEGVNSL 191
           FLSPWEG   +
Sbjct: 181 FLSPWEGNEHV 191


>gi|149632743|ref|XP_001513308.1| PREDICTED: similar to NADH dehydrogenase [ubiquinone] iron-sulfur
           protein 3, mitochondrial precursor (NADH-ubiquinone
           oxidoreductase 30 kDa subunit) (Complex I-30kD)
           (CI-30kD) [Ornithorhynchus anatinus]
          Length = 300

 Score =  229 bits (583), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 88/195 (45%), Positives = 125/195 (64%), Gaps = 1/195 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +++   G+Y+       V+    S   EL + +    ++ + +FL+D  +  F ++ DL 
Sbjct: 92  KQLSAFGEYVAEILPKYVQQVQVSCFNELEICIHPDGVIPVLTFLKDHTNAQFKSLADLT 151

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  +R NRF++VY+ LS ++N R+RVK    E   + S V +Y  A+W+ERE+WDM+G
Sbjct: 152 AVDVPTRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPIESSVTVYKAANWYEREIWDMFG 211

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP RKDFP++G+VEL YDD+VK+VV  PVEL QE R +D 
Sbjct: 212 VFFFNHPDLRRILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDL 271

Query: 182 LSPWEGVNSLFAKED 196
            SPWE   +     D
Sbjct: 272 NSPWEAFPAYRQAAD 286


>gi|296823464|ref|XP_002850449.1| NADH-ubiquinone oxidoreductase kDa subunit [Arthroderma otae CBS
           113480]
 gi|238838003|gb|EEQ27665.1| NADH-ubiquinone oxidoreductase kDa subunit [Arthroderma otae CBS
           113480]
          Length = 291

 Score =  229 bits (583), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 86/200 (43%), Positives = 126/200 (63%), Gaps = 3/200 (1%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
             K+   G Y+++     ++       EL++ V    +V + +FLRD     +  + D+ 
Sbjct: 77  SAKLHTYGQYLISCLPRYIQQFSVWKDELTIYVPPAGVVPVMTFLRDHTAAEYTQVSDIT 136

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VDF +R  RF+VVY+ LS ++N R+RVK    E   VPSI  +Y GA WFEREV+DM+G
Sbjct: 137 AVDFPTREYRFEVVYNLLSVRHNSRIRVKTYADEATPVPSITSLYDGALWFEREVYDMFG 196

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD- 180
           +FF GHPDLRRI+TDYGF+GHPLRKDFP++G+ E+ YD++ K++V  P+EL Q  R+++ 
Sbjct: 197 VFFVGHPDLRRIMTDYGFDGHPLRKDFPLSGYTEIRYDEEKKRIVVEPLELTQAFRNFEG 256

Query: 181 FLSPWEGVNSLFAKEDSKDD 200
             S WEGV      +   D+
Sbjct: 257 GSSAWEGVGQGL--DRKPDN 274


>gi|87200315|ref|YP_497572.1| NADH (or F420H2) dehydrogenase, subunit C [Novosphingobium
           aromaticivorans DSM 12444]
 gi|123488913|sp|Q2G5Y5|NUOC_NOVAD RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|87135996|gb|ABD26738.1| NADH dehydrogenase subunit C [Novosphingobium aromaticivorans DSM
           12444]
          Length = 309

 Score =  229 bits (583), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 84/188 (44%), Positives = 121/188 (64%), Gaps = 2/188 (1%)

Query: 10  DYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRS 69
           D +V +    V  +    GE+ L V    +      LRDD    +  ++D+ GVD+  R+
Sbjct: 18  DTLVAALGDMVAASREEHGEILLTVVRDRVEDALRLLRDDHE--YQQLMDIAGVDYPQRA 75

Query: 70  NRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPD 129
            RFDV Y  LS   N R+ VK++  E   VP++  ++P A W+EREV+DM+G+ F G+PD
Sbjct: 76  ERFDVCYCLLSVTKNHRVIVKVSTDEATPVPTVTTLWPNAGWYEREVYDMFGVLFAGNPD 135

Query: 130 LRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEGVN 189
           LRRILTDYGF+GHP RKDFP+TG+VEL Y ++ K+VVY PV+L Q+ R +DF+SPWEG +
Sbjct: 136 LRRILTDYGFQGHPFRKDFPLTGYVELRYSEEDKRVVYEPVQLAQDLRQFDFMSPWEGAD 195

Query: 190 SLFAKEDS 197
            +   ++ 
Sbjct: 196 YVLPGDEK 203


>gi|148224598|ref|NP_001088497.1| hypothetical protein LOC495365 [Xenopus laevis]
 gi|54311248|gb|AAH84829.1| LOC495365 protein [Xenopus laevis]
          Length = 250

 Score =  228 bits (582), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 89/198 (44%), Positives = 127/198 (64%), Gaps = 1/198 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
            ++   G+Y+       V+    +  GEL + V    ++ +  FLRD  +  F ++ DL 
Sbjct: 46  NQLSAFGEYVAEIMPKYVQQVQVTCNGELEVMVHPDGVIPVLVFLRDHTNAQFKSLADLT 105

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  +R+NRF++VY+ LS ++N R+RVK    E   + S V ++  A+W+EREVWDMYG
Sbjct: 106 AVDIPARTNRFEIVYNLLSLRFNSRMRVKTYADELTPIESAVPVFQAANWYEREVWDMYG 165

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP RKDFP++G+VE+ YDD+VK+VV  PV+L QE R +D 
Sbjct: 166 VFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEVKRVVAEPVQLSQEFRKFDL 225

Query: 182 LSPWEGVNSLFAKEDSKD 199
            SPWE   +   + +S  
Sbjct: 226 SSPWEAFPAHRQQPESPK 243


>gi|58257421|gb|AAW69332.1| NADH-ubiquinone oxidoreductase-like protein [Magnaporthe grisea]
          Length = 291

 Score =  228 bits (582), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 82/200 (41%), Positives = 124/200 (62%), Gaps = 4/200 (2%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
              +   G ++++     V+       EL++ +    ++ + +FL+ +    F  + D+ 
Sbjct: 77  AENLHRYGQWLMSCLPKYVQQFSLWKDELTIYICPSGVIPVFNFLKYNTSAEFTTVSDIT 136

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VDF +R  RF++VY+ LS ++N R+RVK    E   VPSI  IY GA+W+EREV+DM+G
Sbjct: 137 AVDFPTRDQRFEIVYNLLSVRHNARIRVKTYADEASPVPSICSIYDGANWYEREVYDMFG 196

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD- 180
           +FF GHPDLRRI+TDYGFEGHPLRKDFP+TG+ E+ YD++ K++V  P+EL Q  R+++ 
Sbjct: 197 VFFVGHPDLRRIMTDYGFEGHPLRKDFPLTGYTEVRYDEEKKRIVTEPLELTQAFRNFEG 256

Query: 181 FLSPWEGVNSLFAKEDSKDD 200
             S WE V       D   +
Sbjct: 257 GSSAWEQVG---PGNDRTPE 273


>gi|320588831|gb|EFX01299.1| NADH-ubiquinone oxidoreductase subunit precursor [Grosmannia
           clavigera kw1407]
          Length = 296

 Score =  228 bits (582), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 83/195 (42%), Positives = 124/195 (63%), Gaps = 1/195 (0%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   +   G ++++     V+       EL++ +    ++ + +FL+ +    F  I D+
Sbjct: 81  MADNMHRYGAWLMSVLPKYVQQFSVWKDELTIYIPPSGVIPVFTFLKYNTSAEFTQISDI 140

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
             VDF +R  RF++VY+ LS ++N R+RVK    E   VPS+  +Y GA+W+EREV+DM+
Sbjct: 141 TAVDFPTRDQRFEIVYNLLSVRHNSRIRVKTYADEASPVPSVTSLYDGANWYEREVYDMF 200

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           G+FF  HPDLRRI+TDYGFEGHPLRKDFPVTG+ EL YD++ K++V  P+EL Q  R+++
Sbjct: 201 GVFFVDHPDLRRIMTDYGFEGHPLRKDFPVTGYTELRYDEEKKRIVTEPLELTQAFRNFE 260

Query: 181 -FLSPWEGVNSLFAK 194
              S WE V +   K
Sbjct: 261 GGSSSWEQVGAGLDK 275


>gi|164656983|ref|XP_001729618.1| hypothetical protein MGL_3162 [Malassezia globosa CBS 7966]
 gi|159103511|gb|EDP42404.1| hypothetical protein MGL_3162 [Malassezia globosa CBS 7966]
          Length = 275

 Score =  228 bits (582), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 90/190 (47%), Positives = 123/190 (64%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + D G ++++     ++       EL+  V    L+   +FLRD     F  ++D+
Sbjct: 62  MQGPLHDYGSWVLSVLPRFIQQFSVYKDELTFYVAPAGLIPTMTFLRDHTLTQFKVLMDI 121

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
            G D+ +RS RF+V YH LS + N R+RVK    E   VP++  ++  ADWFERE WDMY
Sbjct: 122 SGADYPTRSQRFEVNYHLLSIRNNARIRVKTYADEVTPVPTVTSLFRSADWFEREAWDMY 181

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GIFF GHPDLRRILTDYGFEGHPLRKDFP+TG+ E+ +D++ K+VVY PV+LMQ HR+++
Sbjct: 182 GIFFAGHPDLRRILTDYGFEGHPLRKDFPLTGYTEVRWDEEKKRVVYEPVQLMQAHRNFE 241

Query: 181 FLSPWEGVNS 190
             S WE V  
Sbjct: 242 PASAWEQVGE 251


>gi|294011309|ref|YP_003544769.1| NADH dehydrogenase I chain C [Sphingobium japonicum UT26S]
 gi|292674639|dbj|BAI96157.1| NADH dehydrogenase I chain C [Sphingobium japonicum UT26S]
          Length = 297

 Score =  228 bits (581), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 85/197 (43%), Positives = 123/197 (62%), Gaps = 2/197 (1%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +  I+ +   I       +   V+   ELS  V    L      LRD     +  ++++ 
Sbjct: 8   IATIDGIAQEIAGLLGSMLVETVDHADELSFTVVREKLADAMVLLRD--KAQYQQLMEIA 65

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
           GVD+  R  RF+V YH LS   N R+RVK++  E + VP++  I+P A W EREV+DMYG
Sbjct: 66  GVDYPERPERFEVCYHLLSVTRNHRVRVKVSTDEDRPVPTVTHIWPVAGWLEREVFDMYG 125

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           + FEG+ DLRRILTDYGF+GHP RKDFP+TG+VE+ Y ++ K+VVY+PV+L Q+ R++DF
Sbjct: 126 VIFEGNADLRRILTDYGFKGHPQRKDFPLTGYVEMWYSEEDKRVVYKPVKLAQDFRNFDF 185

Query: 182 LSPWEGVNSLFAKEDSK 198
           +SPWEG   +   ++  
Sbjct: 186 MSPWEGAQYVLPGDEKA 202


>gi|297493932|gb|ADI40688.1| NADH dehydrogenase Fe-S protein 3, 30kDa [Cynopterus sphinx]
          Length = 218

 Score =  228 bits (581), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 87/188 (46%), Positives = 123/188 (65%), Gaps = 1/188 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +++   G+Y+       V+    S   EL + +    ++ + +FLRD  +  F ++ DL 
Sbjct: 30  KQLSAFGEYVAEILPKYVQQVQVSCFNELEICIHPDGVIPVLTFLRDHSNAQFKSLADLT 89

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  +R NRF++VY+ LS ++N R+RVK    E   + S V ++  A+W+ERE+WDM+G
Sbjct: 90  AVDIPTRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPIESTVSVHKAANWYEREIWDMFG 149

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP RKDFP++G+VEL YDD+VK+VV  PVEL QE R +D 
Sbjct: 150 VFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDL 209

Query: 182 LSPWEGVN 189
            SPWE   
Sbjct: 210 NSPWEAFP 217


>gi|225714070|gb|ACO12881.1| NADH dehydrogenase iron-sulfur protein 3, mitochondrial precursor
           [Lepeophtheirus salmonis]
 gi|290562133|gb|ADD38463.1| NADH dehydrogenase iron-sulfur protein 3, mitochondrial
           [Lepeophtheirus salmonis]
          Length = 266

 Score =  228 bits (581), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 90/202 (44%), Positives = 131/202 (64%), Gaps = 1/202 (0%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAV-NSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIID 59
           M + ++D G Y+       V+     +  EL + +    +V + SFL+D  +  F N++D
Sbjct: 57  MRQNLQDFGQYVAECMPKYVQKIQLTAGDELEVLIHPDGVVPVMSFLKDHHNAQFTNLVD 116

Query: 60  LCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDM 119
           LCG+D  +R  RF+++Y+ LS +YN R+RVK    E   + SIV I+  A+W+EREVWDM
Sbjct: 117 LCGMDVPTRKYRFEIIYNLLSLRYNSRIRVKTYTDELTPIDSIVEIHKAANWYEREVWDM 176

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDY 179
           +G++F  HPDLRRILTDYGFEGHPLRKDFP+TGF EL YD + ++VV  PVEL QE+R +
Sbjct: 177 FGVYFSNHPDLRRILTDYGFEGHPLRKDFPLTGFYELRYDMEHQRVVQEPVELAQEYRKF 236

Query: 180 DFLSPWEGVNSLFAKEDSKDDM 201
           D  +PWE   +      + +++
Sbjct: 237 DLAAPWEQFPNFREPLKAAEEV 258


>gi|170055789|ref|XP_001863738.1| NADH dehydrogenase iron-sulfur protein 3, mitochondrial [Culex
           quinquefasciatus]
 gi|167875613|gb|EDS38996.1| NADH dehydrogenase iron-sulfur protein 3, mitochondrial [Culex
           quinquefasciatus]
          Length = 491

 Score =  228 bits (581), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 86/201 (42%), Positives = 124/201 (61%), Gaps = 1/201 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAV-NSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
             + D G Y+       V+     S  EL + +    +V +  FL+D     F N++D+ 
Sbjct: 284 ADLSDFGKYVAECMPKYVQKVQLTSGDELEVLIAPEGVVPVLQFLKDHHQAQFANLVDIA 343

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
           G+D  SR  RF+V+Y+ LS +YN R+RVK    E   + S   ++  A+W+ERE+WDMYG
Sbjct: 344 GMDVPSRQYRFEVIYNILSLRYNSRIRVKTYTDELTPIDSCNEVFKAANWYEREIWDMYG 403

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP R+DFP+TG+VEL YDD+ K+VV  P+EL QE R +D 
Sbjct: 404 VFFANHPDLRRILTDYGFEGHPQRRDFPLTGYVELRYDDEKKRVVCEPLELAQEFRKFDL 463

Query: 182 LSPWEGVNSLFAKEDSKDDMS 202
            +PWE   +      + ++++
Sbjct: 464 SAPWEQFPNFRNANPATEEIA 484



 Score =  216 bits (551), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 84/183 (45%), Positives = 116/183 (63%), Gaps = 1/183 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAV-NSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
             + D G Y+       V+     S  EL + +    +V +  FL+D     F N++D+ 
Sbjct: 32  ADLSDFGKYVAECMPKYVQKVQLTSGDELEVLIAPEGVVPVLQFLKDHHQAQFANLVDIA 91

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
           G+D  SR  RF+V+Y+ LS +YN R+RVK    E   + S   ++  A+W+ERE+WDMYG
Sbjct: 92  GMDVPSRQYRFEVIYNILSLRYNSRIRVKTYTDELTPIDSCNEVFKAANWYEREIWDMYG 151

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP R+DFP+TG+VEL YDD+ K+VV  P+EL QE R +D 
Sbjct: 152 VFFANHPDLRRILTDYGFEGHPQRRDFPLTGYVELRYDDEKKRVVCEPLELAQEFRKFDL 211

Query: 182 LSP 184
            +P
Sbjct: 212 SAP 214


>gi|297493934|gb|ADI40689.1| NADH dehydrogenase Fe-S protein 3, 30kDa [Rousettus leschenaultii]
          Length = 214

 Score =  228 bits (581), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 86/185 (46%), Positives = 123/185 (66%), Gaps = 1/185 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +++   G+Y+       V+    S   EL + +    ++ + +FL+D  +  F ++ DL 
Sbjct: 30  KQLSAFGEYVAEILPKYVQQVQVSCFNELEICIHPDGVIPVLTFLKDHSNAQFKSLADLT 89

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  +R NRF++VY+ LS ++N R+RVK    E   + S V ++  A+W+ERE+WDM+G
Sbjct: 90  AVDIPTRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPIESTVSVHKAANWYEREIWDMFG 149

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP RKDFP++G+VEL YDD+VK+VV  PVEL QE R +D 
Sbjct: 150 VFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDL 209

Query: 182 LSPWE 186
            SPWE
Sbjct: 210 NSPWE 214


>gi|67522543|ref|XP_659332.1| hypothetical protein AN1728.2 [Aspergillus nidulans FGSC A4]
 gi|40744858|gb|EAA64014.1| hypothetical protein AN1728.2 [Aspergillus nidulans FGSC A4]
          Length = 836

 Score =  228 bits (581), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 82/189 (43%), Positives = 118/189 (62%), Gaps = 1/189 (0%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
              +   G YI+      V+       EL + V    ++   +FL+      F  + D+ 
Sbjct: 76  ADSLHQYGQYIMACLPKHVQQFSVWKDELCIYVPPSGIIPTFTFLKYHTSAEFTTVSDIT 135

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD+ ++  RF+VVY+ LS +YN R+RVK    E   VPSI G+Y GA W+EREV+D++G
Sbjct: 136 AVDYPTKDQRFEVVYNLLSVRYNSRIRVKTYADEASPVPSITGLYEGALWYEREVYDLFG 195

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD- 180
           +FF GHPDLRRI+TDYGF+GHPLRKDFP+TG+ EL YD++ K++V  P+EL Q  R+++ 
Sbjct: 196 VFFTGHPDLRRIMTDYGFDGHPLRKDFPMTGYTELRYDEEKKRIVIEPLELTQAFRNFEG 255

Query: 181 FLSPWEGVN 189
             + WE V 
Sbjct: 256 GTTAWEPVG 264


>gi|194865281|ref|XP_001971351.1| GG14478 [Drosophila erecta]
 gi|190653134|gb|EDV50377.1| GG14478 [Drosophila erecta]
          Length = 265

 Score =  227 bits (580), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 86/196 (43%), Positives = 120/196 (61%), Gaps = 1/196 (0%)

Query: 5   IEDLGDYIVNSFSGSVRFAV-NSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGV 63
           + D G Y+       V+     +  EL + +    +V +  FL+D     F N++D+ GV
Sbjct: 60  LSDFGRYVAECLPKYVQKVQLTAGDELEVLIAPEGVVPVLQFLKDHHQAQFTNLVDIAGV 119

Query: 64  DFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIF 123
           D   R NRF+VVY+ LS +YN R+RVK    E   + S   ++  A+W+ERE+WDMYG+F
Sbjct: 120 DVPCRKNRFEVVYNLLSLRYNSRIRVKTYTDELTPLDSACEVHKAANWYEREIWDMYGVF 179

Query: 124 FEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLS 183
           F  HPDLRRILTDYGFEGHP R+DFP++G+VEL YDD+ K+VV  P+EL QE R +D  +
Sbjct: 180 FANHPDLRRILTDYGFEGHPQRRDFPLSGYVELRYDDEKKRVVCEPLELAQEFRKFDLSA 239

Query: 184 PWEGVNSLFAKEDSKD 199
           PWE   +        +
Sbjct: 240 PWEQFPNFRNANPPAE 255


>gi|315122724|ref|YP_004063213.1| NADH dehydrogenase subunit C [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313496126|gb|ADR52725.1| NADH dehydrogenase subunit C [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 198

 Score =  227 bits (580), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 154/198 (77%), Positives = 172/198 (86%)

Query: 5   IEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD 64
           +ED+GDYIVNSF  SVR  +NSVGELSLDVDCGDL+SLC FLRDD +C FVNI+DLCGVD
Sbjct: 1   MEDIGDYIVNSFGRSVRSTINSVGELSLDVDCGDLLSLCYFLRDDSNCRFVNIVDLCGVD 60

Query: 65  FLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFF 124
           FLSRS+RFDVVYHFLSPKYN R+RVK+AV+EG S+PS+V +YP A+WFEREV DMYGI F
Sbjct: 61  FLSRSSRFDVVYHFLSPKYNCRVRVKVAVSEGDSIPSMVEVYPAANWFEREVLDMYGIKF 120

Query: 125 EGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSP 184
           EGHPDLRRILTDYGFEGHPLRKDFPVTGFVEL YDDK KKVVY PVELMQE+RDYDFLSP
Sbjct: 121 EGHPDLRRILTDYGFEGHPLRKDFPVTGFVELRYDDKAKKVVYSPVELMQEYRDYDFLSP 180

Query: 185 WEGVNSLFAKEDSKDDMS 202
           WEG      K+    ++S
Sbjct: 181 WEGSPLFADKDSENGNVS 198


>gi|209738000|gb|ACI69869.1| NADH dehydrogenase iron-sulfur protein 3, mitochondrial precursor
           [Salmo salar]
          Length = 255

 Score =  227 bits (580), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 91/185 (49%), Positives = 123/185 (66%), Gaps = 1/185 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
            ++   G+Y+       V+    +   EL + +    ++ + +FLRD  +  F N+IDL 
Sbjct: 49  NQLAAFGEYVAEMLPKYVQQVQVTCYNELEVMIHPDGVIPVLTFLRDHSNAQFRNMIDLT 108

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  +R NRF++VY+ LS +YN R+R+K    E   V S V ++  A+W+EREVWDMYG
Sbjct: 109 AVDIPTRQNRFEIVYNLLSLRYNSRIRLKTYTDELTPVDSSVSVHNAANWYEREVWDMYG 168

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP RKDFP++GFVE+ YDD+VK+VV  PVEL QE R +D 
Sbjct: 169 VFFANHPDLRRILTDYGFEGHPFRKDFPLSGFVEVRYDDEVKRVVAEPVELSQEFRKFDL 228

Query: 182 LSPWE 186
            SPWE
Sbjct: 229 NSPWE 233


>gi|148223905|ref|NP_001088888.1| NADH dehydrogenase (ubiquinone) Fe-S protein 3, 30kDa
           (NADH-coenzyme Q reductase) [Xenopus laevis]
 gi|56789788|gb|AAH88695.1| LOC496233 protein [Xenopus laevis]
          Length = 250

 Score =  227 bits (580), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 90/198 (45%), Positives = 127/198 (64%), Gaps = 1/198 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
            ++   G+Y+       V+    +  GEL + V    ++ +  FLRD  +  F ++ DL 
Sbjct: 46  NQLSAFGEYVAEIMPKYVQQVQVTCNGELEVMVHPDGVIPVLIFLRDHTNAQFKSLADLT 105

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  +R+NRF++VY+ LS ++N R+RVK    E   V S V ++  A+W+EREVWDMYG
Sbjct: 106 AVDIPARTNRFEIVYNLLSLRFNSRMRVKTYTDELTPVESSVPVFQAANWYEREVWDMYG 165

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP RKDFP++G+VE+ YDD+VK+VV  PV+L QE R +D 
Sbjct: 166 VFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEVKRVVAEPVQLSQEFRKFDL 225

Query: 182 LSPWEGVNSLFAKEDSKD 199
            SPWE   +   + +S  
Sbjct: 226 SSPWEAFPAHRQQPESPK 243


>gi|254572834|ref|XP_002493526.1| hypothetical protein [Pichia pastoris GS115]
 gi|238033325|emb|CAY71347.1| Hypothetical protein PAS_chr4_0120 [Pichia pastoris GS115]
 gi|308152246|emb|CBI83542.1| NUGM (30 kDa) subunit of mitochondrial NADH:ubiquinone
           oxidoreductase (complex I) [Pichia pastoris]
 gi|328354650|emb|CCA41047.1| NADH dehydrogenase (ubiquinone) Fe-S protein 3 [Pichia pastoris CBS
           7435]
          Length = 289

 Score =  227 bits (580), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 85/189 (44%), Positives = 122/189 (64%), Gaps = 1/189 (0%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           + ++   G YI+      V+       EL + V    L  + +FL+D     F   +D+ 
Sbjct: 74  IEELHKFGRYIMGCLPKFVQQFSVWKDELVIYVAPSALTQVATFLKDHTSAQFKACMDVT 133

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
             D+ +R+NRFDVVY+ LS ++N R+R+K   +E   VPS+V ++ GA+WFERE +D++G
Sbjct: 134 AADYPTRTNRFDVVYNLLSVRHNSRIRIKTYASEVSPVPSVVPLFQGANWFERETYDLFG 193

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           IFFEGHPDLRRI+TDYGF+GHPLRKDFP TG+ E+ YD + ++VVY P+EL Q  R++  
Sbjct: 194 IFFEGHPDLRRIMTDYGFQGHPLRKDFPTTGYTEVRYDAEKRRVVYEPLELTQAWRNFTV 253

Query: 182 LSP-WEGVN 189
            S  WE V 
Sbjct: 254 GSSVWEQVG 262


>gi|417393|sp|Q00673|NDUS3_CANMA RecName: Full=Probable NADH-ubiquinone oxidoreductase 30.4 kDa
           subunit, mitochondrial; AltName: Full=Alkane-inducible
           protein 1; AltName: Full=CI-31kD; AltName: Full=Complex
           I-30kD; Flags: Precursor
 gi|170908|gb|AAA34360.1| alkane-inducible protein [Candida maltosa]
 gi|740338|prf||2005210B alkaline-inducible peroxisomal protein
          Length = 276

 Score =  227 bits (580), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 82/190 (43%), Positives = 124/190 (65%), Gaps = 1/190 (0%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           + ++   G YI++     ++       EL++ V    +  + S+L++   C F  ++D+ 
Sbjct: 63  IEELHKFGTYIMSCLPKYIQQFSVWKDELTIYVAPSAIRPVMSYLKNHTSCQFKAVMDIT 122

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
             D+ SR+NRFDVVY+ LS ++N R+RVK    E   VPS+  ++ GA+W+ERE +D++G
Sbjct: 123 AADYPSRTNRFDVVYNLLSDRHNSRIRVKTYANETSPVPSVTPLFNGANWYERETYDLFG 182

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF GHPDLRRI+TDYGFEGHPLRKDFP TG+ E+ YD++ K+V+Y P+EL Q  R++  
Sbjct: 183 VFFVGHPDLRRIMTDYGFEGHPLRKDFPTTGYTEVRYDEEKKRVIYEPLELTQAWRNFTV 242

Query: 182 LSP-WEGVNS 190
            S  WE V  
Sbjct: 243 GSSVWEPVGE 252


>gi|302843459|ref|XP_002953271.1| NADH:ubiquinone oxidoreductase 30 kDa subunit [Volvox carteri f.
           nagariensis]
 gi|300261368|gb|EFJ45581.1| NADH:ubiquinone oxidoreductase 30 kDa subunit [Volvox carteri f.
           nagariensis]
          Length = 285

 Score =  227 bits (579), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 96/187 (51%), Positives = 123/187 (65%), Gaps = 7/187 (3%)

Query: 7   DLGDYIVNSFSGSVRFAVNSVG-------ELSLDVDCGDLVSLCSFLRDDPHCCFVNIID 59
            L DYI+ +    V+ AV   G       E ++      L+ L +FLRD     F  +ID
Sbjct: 95  QLTDYIIKTVPKFVKMAVVGPGQSTLLYQEPTIYTTPDSLLPLMTFLRDHVQTQFKCLID 154

Query: 60  LCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDM 119
           +  VDF  R+ RF+VVYH LSP++N R+RVK+ V E   VPSI  I+  A+WFERE WDM
Sbjct: 155 ITAVDFPERAARFEVVYHLLSPRWNNRIRVKVCVDEVTPVPSIWKIFNTANWFERETWDM 214

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDY 179
           +G+FF GHPDLRRIL+DYGF GHPLRKDFP++G+ E+ YD   K+VV  P+EL QE R +
Sbjct: 215 FGVFFSGHPDLRRILSDYGFTGHPLRKDFPLSGYTEVRYDYGKKRVVSEPLELTQEFRYF 274

Query: 180 DFLSPWE 186
           DF SPWE
Sbjct: 275 DFNSPWE 281


>gi|241736746|ref|XP_002413990.1| NADH-ubiquinone oxidoreductase, NDUFS3/30 kDa subunit, putative
           [Ixodes scapularis]
 gi|215507844|gb|EEC17298.1| NADH-ubiquinone oxidoreductase, NDUFS3/30 kDa subunit, putative
           [Ixodes scapularis]
          Length = 268

 Score =  227 bits (579), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 91/198 (45%), Positives = 131/198 (66%), Gaps = 1/198 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNSVG-ELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +K+ED G Y+       V+    + G EL + +    +V + SFL+D  +  + NI+D+ 
Sbjct: 57  QKLEDFGRYVAECLPKYVQKVQITQGDELEVMIAPEGVVPVLSFLKDHHNAQYANIVDIA 116

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
           GVD  +R  RF+VVY+ LS  +N R+RVK    E  ++ S   +Y GA+W+EREVWDM+G
Sbjct: 117 GVDVPTRQYRFEVVYNLLSLHFNSRIRVKTYTDELTALDSATPVYKGANWYEREVWDMFG 176

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP RKDFP++G+VE+ YDD+VK+VV  P+EL QE+R +D 
Sbjct: 177 VFFGNHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEVKRVVVEPLELTQEYRKFDL 236

Query: 182 LSPWEGVNSLFAKEDSKD 199
            +PWE      +   +++
Sbjct: 237 ATPWETFPKFRSGGAAEE 254


>gi|24656494|ref|NP_647775.1| CG12079 [Drosophila melanogaster]
 gi|7292316|gb|AAF47723.1| CG12079 [Drosophila melanogaster]
 gi|21428482|gb|AAM49901.1| LD25561p [Drosophila melanogaster]
 gi|40882445|gb|AAR96134.1| RH59487p [Drosophila melanogaster]
 gi|220944318|gb|ACL84702.1| CG12079-PA [synthetic construct]
 gi|220954090|gb|ACL89588.1| CG12079-PA [synthetic construct]
          Length = 265

 Score =  227 bits (579), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 86/196 (43%), Positives = 120/196 (61%), Gaps = 1/196 (0%)

Query: 5   IEDLGDYIVNSFSGSVRFAV-NSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGV 63
           + D G Y+       V+     +  EL + +    +V +  FL+D     F N++D+ GV
Sbjct: 60  LSDFGRYVAECLPKYVQKVQLTAGDELEVLIAPEGVVPVLQFLKDHHQAQFTNLVDIAGV 119

Query: 64  DFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIF 123
           D   R NRF+VVY+ LS +YN R+RVK    E   + S   ++  A+W+ERE+WDMYG+F
Sbjct: 120 DVPCRKNRFEVVYNLLSLRYNSRIRVKTYTDELTPLDSACEVHKAANWYEREIWDMYGVF 179

Query: 124 FEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLS 183
           F  HPDLRRILTDYGFEGHP R+DFP++G+VEL YDD+ K+VV  P+EL QE R +D  +
Sbjct: 180 FANHPDLRRILTDYGFEGHPQRRDFPLSGYVELRYDDEKKRVVCEPLELAQEFRKFDLSA 239

Query: 184 PWEGVNSLFAKEDSKD 199
           PWE   +        +
Sbjct: 240 PWEQFPNFRNANPPAE 255


>gi|195126120|ref|XP_002007522.1| GI12345 [Drosophila mojavensis]
 gi|193919131|gb|EDW17998.1| GI12345 [Drosophila mojavensis]
          Length = 267

 Score =  227 bits (579), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 85/197 (43%), Positives = 119/197 (60%), Gaps = 1/197 (0%)

Query: 4   KIEDLGDYIVNSFSGSVRFAV-NSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
            + + G Y+       V+     S  EL + +    +V +  FL+D     F N++D+ G
Sbjct: 58  SLSEFGRYVAECMPKYVQKVQLTSGDELEVLIAPEGVVPVLQFLKDHHQAQFTNLVDIAG 117

Query: 63  VDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGI 122
           VD   R  RF+VVY+ LS +YN R+RVK    E   + S   ++  A+W+ERE+WDMYG+
Sbjct: 118 VDVPCRKYRFEVVYNILSLRYNARIRVKTYTDELTPLDSACEVHKAANWYEREIWDMYGV 177

Query: 123 FFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFL 182
           FF  HPDLRRILTDYGFEGHP R+DFP++G+VEL YDD+ K+VV  P+EL QE R +D  
Sbjct: 178 FFANHPDLRRILTDYGFEGHPQRRDFPLSGYVELRYDDEKKRVVCEPLELAQEFRKFDLS 237

Query: 183 SPWEGVNSLFAKEDSKD 199
           +PWE   +        +
Sbjct: 238 APWEQFPNFRNANPPAE 254


>gi|195492783|ref|XP_002094139.1| GE21665 [Drosophila yakuba]
 gi|194180240|gb|EDW93851.1| GE21665 [Drosophila yakuba]
          Length = 265

 Score =  227 bits (579), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 86/196 (43%), Positives = 120/196 (61%), Gaps = 1/196 (0%)

Query: 5   IEDLGDYIVNSFSGSVRFAV-NSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGV 63
           + D G Y+       V+     +  EL + +    +V +  FL+D     F N++D+ GV
Sbjct: 60  LSDFGRYVAECLPKYVQKVQLTAGDELEVLIAPEGVVPVLQFLKDHHQAQFTNLVDIAGV 119

Query: 64  DFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIF 123
           D   R NRF+VVY+ LS +YN R+RVK    E   + S   ++  A+W+ERE+WDMYG+F
Sbjct: 120 DVPCRKNRFEVVYNLLSLRYNSRVRVKTYTDELTPLDSACEVHKAANWYEREIWDMYGVF 179

Query: 124 FEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLS 183
           F  HPDLRRILTDYGFEGHP R+DFP++G+VEL YDD+ K+VV  P+EL QE R +D  +
Sbjct: 180 FANHPDLRRILTDYGFEGHPQRRDFPLSGYVELRYDDEKKRVVCEPLELAQEFRKFDLSA 239

Query: 184 PWEGVNSLFAKEDSKD 199
           PWE   +        +
Sbjct: 240 PWEQFPNFRNANPPAE 255


>gi|332373832|gb|AEE62057.1| unknown [Dendroctonus ponderosae]
          Length = 259

 Score =  227 bits (579), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 86/199 (43%), Positives = 127/199 (63%), Gaps = 1/199 (0%)

Query: 4   KIEDLGDYIVNSFSGSVRFAVNSVG-ELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
           +++D G Y+ +     V  A  + G EL L +    +V +  FL+D  +C F N+ D+ G
Sbjct: 54  QLKDFGKYVADCLPKYVETAQITHGDELELLISPDGVVPVLQFLKDHHNCQFTNLSDIAG 113

Query: 63  VDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGI 122
           +D  SR+ RF+++Y+ LS ++N R+RVK    E   V S   ++  A+W+ERE+WDMYG+
Sbjct: 114 MDVPSRTYRFELIYNLLSLRFNSRIRVKTYTDELTPVDSCDEVFKAANWYEREIWDMYGV 173

Query: 123 FFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFL 182
           FF  HPDLRRILTDYGFEGHP RKDFP++G+VE+ YDD+ K+VV  P+EL QE R ++  
Sbjct: 174 FFANHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEKKRVVVEPLELAQEFRKFELS 233

Query: 183 SPWEGVNSLFAKEDSKDDM 201
           +PWE            +++
Sbjct: 234 APWEQFPKFRKALPVAEEI 252


>gi|330938088|ref|XP_003305677.1| hypothetical protein PTT_18588 [Pyrenophora teres f. teres 0-1]
 gi|311317183|gb|EFQ86217.1| hypothetical protein PTT_18588 [Pyrenophora teres f. teres 0-1]
          Length = 288

 Score =  227 bits (579), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 79/200 (39%), Positives = 123/200 (61%), Gaps = 4/200 (2%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
             +   G Y+++     ++       EL++ V    ++   +FL+      +  I D+  
Sbjct: 75  EALHKYGQYLMSCLPKYIQQFSVWKDELTIYVPPSGIIPTFTFLKYHTAAEYTQISDITA 134

Query: 63  VDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGI 122
           VD+ ++  RF+VVY+ LS ++N RLRVK    E   VPS+  +Y GA+W+EREV+D++G+
Sbjct: 135 VDYPTKDQRFEVVYNMLSIRHNSRLRVKTYADEATPVPSLCDLYDGANWYEREVYDLFGV 194

Query: 123 FFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDY-DF 181
           FF GHPDLRRI+TDYGF+GHPLRKDFP+TG+ E+ YD++ K++V  P+E+ Q  R++   
Sbjct: 195 FFVGHPDLRRIMTDYGFDGHPLRKDFPMTGYTEIRYDEEKKRIVVEPLEMTQAFRNFRGG 254

Query: 182 LSPWEGVNSLFAKEDSKDDM 201
            S WE V      +D K + 
Sbjct: 255 SSAWEQVG---PGDDLKPEA 271


>gi|238880572|gb|EEQ44210.1| NADH-ubiquinone oxidoreductase subunit 9 [Candida albicans WO-1]
          Length = 279

 Score =  227 bits (579), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 86/190 (45%), Positives = 123/190 (64%), Gaps = 1/190 (0%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           + ++   G YI+      V+       EL++ V    ++    FL+++  C F  + D+ 
Sbjct: 64  IEELHKFGTYIMACLPKYVQQFSVWKDELTIYVAPSAILPTMLFLKNNTACQFKQVSDVT 123

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
             D+ SR+NRFDVVY+ LS ++N R+RVK    E   VPSI  ++ GA+WFERE +D++G
Sbjct: 124 AADYPSRTNRFDVVYNLLSVRHNSRIRVKTYANETTPVPSITPLFNGANWFERETYDLFG 183

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FFEGHPDLRRILTDYGFEGHPLRKDFP TG+ E+ YD++ K+++Y P+EL Q  R++  
Sbjct: 184 VFFEGHPDLRRILTDYGFEGHPLRKDFPTTGYTEVRYDEEKKRIIYEPLELTQAWRNFTV 243

Query: 182 LSP-WEGVNS 190
            S  WE V  
Sbjct: 244 GSSVWEPVGE 253


>gi|241952715|ref|XP_002419079.1| NADH-ubiquinone oxidoreductase subunit, mitochondrial precursor,
           putative [Candida dubliniensis CD36]
 gi|223642419|emb|CAX42664.1| NADH-ubiquinone oxidoreductase subunit, mitochondrial precursor,
           putative [Candida dubliniensis CD36]
          Length = 280

 Score =  227 bits (579), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 86/190 (45%), Positives = 122/190 (64%), Gaps = 1/190 (0%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           + ++   G YI+      ++       EL++ V    ++    FL+++  C F  + D+ 
Sbjct: 65  IEELHKFGTYIMACLPKYIQQFSVWKDELTIYVAPTAILPTMLFLKNNTSCQFKQVSDIT 124

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
             D+ SR+NRFDVVY+ LS ++N R+RVK    E   VPSI   + GA+WFERE +D++G
Sbjct: 125 AADYPSRTNRFDVVYNLLSVRHNSRIRVKTYANETTPVPSITPYFNGANWFERETYDLFG 184

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           IFFEGHPDLRRILTDYGFEGHPLRKDFP TG+ E+ YD++ K+++Y P+EL Q  R++  
Sbjct: 185 IFFEGHPDLRRILTDYGFEGHPLRKDFPTTGYTEVRYDEEKKRIIYEPLELTQAWRNFTV 244

Query: 182 LSP-WEGVNS 190
            S  WE V  
Sbjct: 245 GSSVWEPVGE 254


>gi|11466534|ref|NP_044783.1| NADH dehydrogenase subunit 9 [Reclinomonas americana]
 gi|6647648|sp|O21271|NDUS3_RECAM RecName: Full=NADH-ubiquinone oxidoreductase subunit 9
 gi|2258364|gb|AAD11898.1| NADH dehydrogenase subunit 9 [Reclinomonas americana]
          Length = 204

 Score =  227 bits (578), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 90/195 (46%), Positives = 130/195 (66%)

Query: 5   IEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD 64
           +++ G  ++  F   +  A+ S GEL+L V   +L++L   L++  +C F ++ DLC VD
Sbjct: 10  LKEFGISLIKMFPKYIDKAIYSKGELTLHVKPTNLIALMKILKNHTNCQFKSLSDLCAVD 69

Query: 65  FLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFF 124
           F  +  RF++VY+ LS +YN R+RVK  V E   VPS+  ++  A WFEREVWD++G++F
Sbjct: 70  FPEKKERFEIVYNLLSVRYNSRIRVKTFVDELTPVPSVTCLFQAAGWFEREVWDLFGVYF 129

Query: 125 EGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSP 184
             HPDLRRILTDYGFEGHP+RKDFP+TG+VE+ YDD+ K+VV   +E+ QE R ++F SP
Sbjct: 130 TNHPDLRRILTDYGFEGHPMRKDFPLTGYVEVRYDDEQKRVVTESLEMTQEFRSFNFTSP 189

Query: 185 WEGVNSLFAKEDSKD 199
           WE +         K 
Sbjct: 190 WEQIEISKPNIKEKK 204


>gi|149184637|ref|ZP_01862955.1| NADH (or F420H2) dehydrogenase, subunit C [Erythrobacter sp. SD-21]
 gi|148831957|gb|EDL50390.1| NADH (or F420H2) dehydrogenase, subunit C [Erythrobacter sp. SD-21]
          Length = 306

 Score =  227 bits (578), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 86/196 (43%), Positives = 122/196 (62%), Gaps = 2/196 (1%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
            +I+ L   + ++    +       GEL L V    +      LRDD    +  ++++ G
Sbjct: 11  TQIDGLAGTLSSALGDHLVSVHEEHGELLLAVHRASIEDALRILRDDH--GYQQLMEIAG 68

Query: 63  VDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGI 122
           VD+ SR+ RF+VVY  LS   N R+ VK   +E   VP++  ++P A W EREV+DMYG+
Sbjct: 69  VDYPSRAERFEVVYMLLSLTKNSRIMVKCTASEDTPVPTVTTLWPNAGWLEREVFDMYGV 128

Query: 123 FFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFL 182
            F+G+ DLRRILTDYGFEGHP RKDFP+TG+VEL Y +  K+VVY PVEL Q+ R +DF+
Sbjct: 129 LFDGNTDLRRILTDYGFEGHPFRKDFPLTGYVELRYSEDEKRVVYEPVELAQDLRQFDFM 188

Query: 183 SPWEGVNSLFAKEDSK 198
           SPWEG + +   ++  
Sbjct: 189 SPWEGADYVLPGDEKA 204


>gi|224051042|ref|XP_002199900.1| PREDICTED: NADH dehydrogenase (ubiquinone) Fe-S protein 3, 30kDa
           (NADH-coenzyme Q reductase), partial [Taeniopygia
           guttata]
          Length = 224

 Score =  227 bits (578), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 87/195 (44%), Positives = 124/195 (63%), Gaps = 1/195 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +++   G+Y+       ++    +   EL L +    ++ + +FLRD  +  F ++ DL 
Sbjct: 16  KQLCAFGEYVAEILPKYIQQVQVTCFNELELLIHPDGIIPVLTFLRDHTNAQFKSLADLT 75

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  SR  RF++VY+ LS ++N R+RVK    E   + S V ++  A+W+EREVWDMYG
Sbjct: 76  AVDVPSRQYRFEIVYNLLSLRFNSRIRVKTYTDELTPIDSAVPVHKAANWYEREVWDMYG 135

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP RKDFP++G+VE+ YDD+VK+VV  PVEL QE R +D 
Sbjct: 136 VFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEVKRVVAEPVELAQEFRKFDL 195

Query: 182 LSPWEGVNSLFAKED 196
            SPWE   +     +
Sbjct: 196 NSPWEAFPAYRPPPE 210


>gi|294083713|ref|YP_003550470.1| NADH (or F420H2) dehydrogenase subunit C [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292663285|gb|ADE38386.1| NADH (or F420H2) dehydrogenase, subunit C [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 219

 Score =  227 bits (578), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 97/196 (49%), Positives = 129/196 (65%)

Query: 5   IEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD 64
           +  + +Y+    +      V +  E+ + V+  D+ S+ + LRDD H  F  + DL  VD
Sbjct: 20  LSTMANYVREILADIYESVVATNDEVLVRVNSQDITSVLTKLRDDNHAAFTQLSDLTAVD 79

Query: 65  FLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFF 124
           +  R  RF++VY  LS   N RLR+   VAEG+SVPS+ G++  A+W ERE WDM+GIFF
Sbjct: 80  YPERPVRFEMVYQLLSISNNMRLRILAGVAEGQSVPSVSGVFSAANWAEREAWDMFGIFF 139

Query: 125 EGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSP 184
            GHPDLRR+LTDYGFEGHPLRKDFP+TG VE+ YDD  ++VV  PV L+QE RD+DFLSP
Sbjct: 140 AGHPDLRRLLTDYGFEGHPLRKDFPLTGHVEVRYDDTQRRVVNEPVHLVQEFRDFDFLSP 199

Query: 185 WEGVNSLFAKEDSKDD 200
           WEG+       DS  +
Sbjct: 200 WEGMQHAIDAADSDKN 215


>gi|119193969|ref|XP_001247588.1| hypothetical protein CIMG_01359 [Coccidioides immitis RS]
 gi|303311651|ref|XP_003065837.1| NADH-ubiquinone oxidoreductase 30.4 kDa subunit, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|111606571|gb|ABH10650.1| NADH-ubiquinone oxidoreductase subunit [Coccidioides posadasii]
 gi|240105499|gb|EER23692.1| NADH-ubiquinone oxidoreductase 30.4 kDa subunit, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|320039733|gb|EFW21667.1| NADH-ubiquinone oxidoreductase 30 kDa subunit [Coccidioides
           posadasii str. Silveira]
          Length = 287

 Score =  226 bits (577), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 79/189 (41%), Positives = 124/189 (65%), Gaps = 1/189 (0%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
            +++   G+Y+++     ++       EL++ +    ++ + SFL+D     +  + D+ 
Sbjct: 74  SKELHTYGEYLMSCLPKYIQQFSVWKDELTIYIPPTGVIPVISFLKDHTAAEYKQVSDIT 133

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VDF +R  RF+VVY+ LS ++N R+RVK    E   VPSI  +Y GA W+EREV+D++G
Sbjct: 134 AVDFPTREYRFEVVYNLLSVRHNSRIRVKTYADEATPVPSITSLYDGAVWYEREVYDLFG 193

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD- 180
           +FF GHPDLRRI+TDYGF+GHPLRKDFP+TG+ E+ YD++ K++V  P+EL Q  R+++ 
Sbjct: 194 VFFVGHPDLRRIMTDYGFDGHPLRKDFPLTGYTEIRYDEEKKRIVVEPLELTQAFRNFEG 253

Query: 181 FLSPWEGVN 189
             S WE + 
Sbjct: 254 GTSAWEQIG 262


>gi|150866762|ref|XP_001386464.2| NADH-ubiquinone oxidoreductase 30.4 kDa subunit, mitochondrial
           precursor [Scheffersomyces stipitis CBS 6054]
 gi|149388018|gb|ABN68435.2| NADH-ubiquinone oxidoreductase 30.4 kDa subunit, mitochondrial
           precursor [Scheffersomyces stipitis CBS 6054]
          Length = 281

 Score =  226 bits (577), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 87/190 (45%), Positives = 122/190 (64%), Gaps = 1/190 (0%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           + ++   G YI+      ++       EL++ V    L     FL++     F + +D+ 
Sbjct: 67  IEELHKFGAYIMACMPKYIQQFSVWKDELTIYVAPSALRPTMVFLKNHTSAQFKSCVDVT 126

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
             D+ SR+NRFDVVY+ LS ++N R+RVK    E  +VPS+V IY G +WFERE +D++G
Sbjct: 127 AADYPSRTNRFDVVYNLLSVRHNSRIRVKTYANETSAVPSLVPIYQGVNWFERETYDLFG 186

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           IFFEGHPDLRRI+TDYGFEGHPLRKDFP TG+ E+ YD++ K+V+Y P+EL Q  R++  
Sbjct: 187 IFFEGHPDLRRIMTDYGFEGHPLRKDFPTTGYTEVRYDEEKKRVIYEPLELTQAWRNFSV 246

Query: 182 LSP-WEGVNS 190
            S  WE V  
Sbjct: 247 GSSVWEQVGE 256


>gi|317032320|ref|XP_003188817.1| NADH-ubiquinone oxidoreductase subunit [Aspergillus niger CBS
           513.88]
 gi|317032322|ref|XP_001394604.2| NADH-ubiquinone oxidoreductase subunit [Aspergillus niger CBS
           513.88]
          Length = 287

 Score =  226 bits (577), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 84/189 (44%), Positives = 120/189 (63%), Gaps = 1/189 (0%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
              +   G YI++     V+       EL + V    L+   +FL+      +  I D+ 
Sbjct: 74  ADSLHKYGQYIMSCLPKHVQQFSVWKDELCIYVPPSGLIPTMTFLKYHTAAEYTQISDIT 133

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
           GVDF +R  RF+VVY+ LS +YN R+RVK    E   VPS+ G++ GA W+EREV+DM+G
Sbjct: 134 GVDFPTRDQRFEVVYNMLSVRYNSRIRVKTYADEASPVPSVTGLFEGALWYEREVYDMFG 193

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF GHPDLRRI+TDYGF+GHPLRKDFP+TG+ EL Y ++ K++V  P+EL Q  R+++ 
Sbjct: 194 VFFTGHPDLRRIMTDYGFDGHPLRKDFPLTGYTELRYCEEKKRIVIEPLELTQAFRNFEG 253

Query: 182 LS-PWEGVN 189
            +  WE V+
Sbjct: 254 GTAAWEPVS 262


>gi|82934613|ref|XP_894449.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 3,
           mitochondrial-like [Mus musculus]
          Length = 263

 Score =  226 bits (576), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 88/196 (44%), Positives = 125/196 (63%), Gaps = 1/196 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +++    +Y+       V+    S + +L + +    ++   +FLRD  +  F ++ DL 
Sbjct: 55  KQLSAFAEYVAEILPKYVQQVQVSCLDKLEICIHHDGVIPTLTFLRDHTNAQFKSLADLT 114

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  +R NRF++VY+ LS ++N R+RVK    E   + SIV ++  A+W+EREVWDM+G
Sbjct: 115 AVDVPTRQNRFEIVYNLLSLRFNSRIRVKTYADELTPIDSIVSVHIAANWYEREVWDMFG 174

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP RKDFP+ G+VEL YDD+VK+VV  PVEL QE R +D 
Sbjct: 175 VFFFNHPDLRRILTDYGFEGHPFRKDFPLAGYVELRYDDEVKRVVAEPVELAQEFRKFDL 234

Query: 182 LSPWEGVNSLFAKEDS 197
            SPWE   +     +S
Sbjct: 235 NSPWEAFPAYRQPPES 250


>gi|281340496|gb|EFB16080.1| hypothetical protein PANDA_010603 [Ailuropoda melanoleuca]
          Length = 219

 Score =  226 bits (576), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 89/196 (45%), Positives = 125/196 (63%), Gaps = 1/196 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +++   G+Y+       V+    S   EL + +    ++ +  FLRD  +  F ++ DL 
Sbjct: 11  KQLSAFGEYVAEILPKYVQQVQVSCFNELEICIHPDGVIPVLIFLRDHTNAQFKSLADLT 70

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  +R NRF++VY+ LS ++N R+RVK    E   + S V +Y  A+W+ERE+WDM+G
Sbjct: 71  AVDIPTRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPIESTVSVYKAANWYEREIWDMFG 130

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP RKDFP++G+VEL YDD+VK+VV  PVEL QE R +D 
Sbjct: 131 VFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDL 190

Query: 182 LSPWEGVNSLFAKEDS 197
            SPWE   +     +S
Sbjct: 191 NSPWEAFPAYRQPPES 206


>gi|289739713|gb|ADD18604.1| NADH-ubiquinone oxidoreductase NDUFS3/30kDa subunit [Glossina
           morsitans morsitans]
          Length = 260

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 84/200 (42%), Positives = 121/200 (60%), Gaps = 1/200 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAV-NSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
             + D G Y+       V+     +  EL + +    +V +  FL+D     F N+ D+ 
Sbjct: 55  NSLSDFGRYVAECLPKYVQKVQLTAGDELEVLIAPEGVVPVLQFLKDHHQAQFSNLTDIA 114

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
           G+D  +R  RF+V+Y+ LS +YN R+RVK    E   + S   +Y  A+W+ERE++DMYG
Sbjct: 115 GMDVPNRKYRFEVIYNILSLRYNSRIRVKTYTDELTPLDSCFEVYKAANWYEREIYDMYG 174

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP R+DFP++G+VEL YDD+ K+VV  P+EL QE R +D 
Sbjct: 175 VFFANHPDLRRILTDYGFEGHPQRRDFPLSGYVELRYDDEKKRVVCEPLELAQEFRKFDL 234

Query: 182 LSPWEGVNSLFAKEDSKDDM 201
            +PWE   +      S  ++
Sbjct: 235 SAPWEQFPNFRNANPSATEI 254


>gi|58388728|ref|XP_316497.2| AGAP006456-PA [Anopheles gambiae str. PEST]
 gi|55239226|gb|EAA11886.2| AGAP006456-PA [Anopheles gambiae str. PEST]
          Length = 262

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 83/200 (41%), Positives = 126/200 (63%), Gaps = 1/200 (0%)

Query: 4   KIEDLGDYIVNSFSGSVRFAV-NSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
           ++ + G Y+       V+     S  EL + +    +V +  FL+D  +  F N++D+ G
Sbjct: 57  ELSEFGKYVAECMPKYVQKVQLTSGDELEVLIAPEGVVPVLQFLKDHHNAQFANLVDIAG 116

Query: 63  VDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGI 122
           +D  SR  RF+++Y+ LS +YN R+RVK    E   + S   ++  A+W+ERE+WDMYG+
Sbjct: 117 MDVPSRPYRFEIIYNILSLRYNSRIRVKTYTDELTPIDSCNEVFKAANWYEREIWDMYGV 176

Query: 123 FFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFL 182
           FF  HPDLRRILTDYGFEGHP R+DFP++G+VEL YDD+ K+VV  P+EL QE R +D  
Sbjct: 177 FFANHPDLRRILTDYGFEGHPQRRDFPLSGYVELRYDDEKKRVVCEPLELAQEFRKFDLS 236

Query: 183 SPWEGVNSLFAKEDSKDDMS 202
           +PWE   +      + ++++
Sbjct: 237 APWEQFPNFRNANPATEEVA 256


>gi|328772973|gb|EGF83010.1| hypothetical protein BATDEDRAFT_8530 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 181

 Score =  226 bits (575), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 89/181 (49%), Positives = 126/181 (69%)

Query: 5   IEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD 64
           +++ G YI +     ++       EL+L +    L+ + +FLRD     F  + ++  VD
Sbjct: 1   LQEFGKYIASCMPKYIQQITVYKDELTLFIAPSGLIPVATFLRDHQATQFQQVQNITVVD 60

Query: 65  FLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFF 124
           + SR NRF+VVY+FLS ++N R+RVK    E   VPS+V +Y GA+W+EREVWDM+G+FF
Sbjct: 61  YPSRENRFEVVYNFLSVRFNNRIRVKTYTNEIDPVPSLVPLYTGANWYEREVWDMFGVFF 120

Query: 125 EGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSP 184
            GHPDLRRILTDYGFEGHPLRKDFP+TG+VE+ YD++ K+V+  P+EL Q  R +++ SP
Sbjct: 121 TGHPDLRRILTDYGFEGHPLRKDFPLTGYVEMRYDEEKKRVIAEPLELAQSFRMFEYQSP 180

Query: 185 W 185
           W
Sbjct: 181 W 181


>gi|307293268|ref|ZP_07573114.1| NADH (or F420H2) dehydrogenase, subunit C [Sphingobium
           chlorophenolicum L-1]
 gi|306881334|gb|EFN12550.1| NADH (or F420H2) dehydrogenase, subunit C [Sphingobium
           chlorophenolicum L-1]
          Length = 258

 Score =  226 bits (575), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 85/196 (43%), Positives = 122/196 (62%), Gaps = 2/196 (1%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +  I+ +   I       +   V+   ELS  V    L    + LRD     +  ++++ 
Sbjct: 8   IATIDGIAQEIAGLLGSMLVETVDHADELSFTVVREKLADALAALRD--KAQYQQLMEIA 65

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
           GVD+  R  RF+V YH LS   N R+RVK++  E + VP++  ++P A W EREV+DMYG
Sbjct: 66  GVDYPERPERFEVCYHLLSVTRNHRIRVKVSTDEDRPVPTVTHLWPVAGWLEREVFDMYG 125

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           + FEG+ DLRRILTDYGF+GHP RKDFP+TG+VEL Y ++ K+VVY PV+L Q+ R +DF
Sbjct: 126 VIFEGNADLRRILTDYGFKGHPQRKDFPLTGYVELRYSEEDKRVVYEPVKLAQDFRSFDF 185

Query: 182 LSPWEGVNSLFAKEDS 197
           +SPWEG   +   ++ 
Sbjct: 186 MSPWEGAQYVLPGDEK 201


>gi|48099278|ref|XP_394885.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 3,
           mitochondrial [Apis mellifera]
          Length = 261

 Score =  226 bits (575), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 87/204 (42%), Positives = 128/204 (62%), Gaps = 4/204 (1%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVN-SVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
             I+DLG YI       V+     +  EL + V    ++    FL+   +  + ++ D+ 
Sbjct: 54  ETIKDLGLYIAACLPKYVQKTQIVAGDELEILVCPEGIIPTLKFLKLHQNTQYTSLSDIT 113

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            +D  SR  RF+++Y+ LS  +N+R+RVK    E   VPS   I+  A+W+ERE+WDM+G
Sbjct: 114 AMDVPSRQYRFEIIYNLLSITFNKRIRVKTYTDELTPVPSAEPIFDAANWYEREIWDMFG 173

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           I F GH DLRRILTDYGFEGHPLRKDFP++GFVE+ YDD++K+VV  P+EL QE R ++ 
Sbjct: 174 ILFMGHTDLRRILTDYGFEGHPLRKDFPLSGFVEVRYDDELKRVVCEPLELAQEFRKFEL 233

Query: 182 LSPWEGVNS---LFAKEDSKDDMS 202
            +PWE   +   +   ++SK+D +
Sbjct: 234 SAPWEQFPNFRSIPPSDESKEDST 257


>gi|169606670|ref|XP_001796755.1| hypothetical protein SNOG_06383 [Phaeosphaeria nodorum SN15]
 gi|160707055|gb|EAT86214.2| hypothetical protein SNOG_06383 [Phaeosphaeria nodorum SN15]
          Length = 282

 Score =  226 bits (575), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 78/199 (39%), Positives = 123/199 (61%), Gaps = 4/199 (2%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
             +   G Y+++     ++       EL++ +    ++   +FL+      +  I D+  
Sbjct: 75  EALHKYGQYLMSCLPKYIQQFSVWKDELTIYIPPAGVIPTFTFLKYHTAAEYTQISDITA 134

Query: 63  VDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGI 122
           VD+ ++  RF+VVY+ LS ++N RLRVK    E   VPS+  +Y GA+W+EREV+D++G+
Sbjct: 135 VDYPTKDQRFEVVYNMLSIRHNSRLRVKTYADEATPVPSLCDLYDGANWYEREVYDLFGV 194

Query: 123 FFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDY-DF 181
           FF GHPDLRRI+TDYGF+GHPLRKDFP+TG+ E+ YD++ K++V  P+E+ Q  R++   
Sbjct: 195 FFVGHPDLRRIMTDYGFDGHPLRKDFPMTGYTEIRYDEEKKRIVVEPLEMTQAFRNFRGG 254

Query: 182 LSPWEGVNSLFAKEDSKDD 200
            S WE V      +D K +
Sbjct: 255 SSAWEQVG---PGDDLKPE 270


>gi|68468443|ref|XP_721781.1| potential mitochondrial Complex I, NUGM_30kd subunit [Candida
           albicans SC5314]
 gi|68468682|ref|XP_721660.1| potential mitochondrial Complex I, NUGM_30kd subunit [Candida
           albicans SC5314]
 gi|46443589|gb|EAL02870.1| potential mitochondrial Complex I, NUGM_30kd subunit [Candida
           albicans SC5314]
 gi|46443719|gb|EAL02999.1| potential mitochondrial Complex I, NUGM_30kd subunit [Candida
           albicans SC5314]
          Length = 279

 Score =  226 bits (575), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 86/190 (45%), Positives = 122/190 (64%), Gaps = 1/190 (0%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           + ++   G YI+      V        EL++ V    ++    FL+++  C F  + D+ 
Sbjct: 64  IEELHKFGTYIMACLPKYVHQFSVWKDELTIYVAPSAILPTMLFLKNNTACQFKQVSDVT 123

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
             D+ SR+NRFDVVY+ LS ++N R+RVK    E   VPSI  ++ GA+WFERE +D++G
Sbjct: 124 AADYPSRTNRFDVVYNLLSVRHNSRIRVKTYANETTPVPSITPLFNGANWFERETYDLFG 183

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FFEGHPDLRRILTDYGFEGHPLRKDFP TG+ E+ YD++ K+++Y P+EL Q  R++  
Sbjct: 184 VFFEGHPDLRRILTDYGFEGHPLRKDFPTTGYTEVRYDEEKKRIIYEPLELTQAWRNFTV 243

Query: 182 LSP-WEGVNS 190
            S  WE V  
Sbjct: 244 GSSVWEPVGE 253


>gi|189190938|ref|XP_001931808.1| NADH dehydrogenase iron-sulfur protein 3, mitochondrial precursor
           [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187973414|gb|EDU40913.1| NADH dehydrogenase iron-sulfur protein 3, mitochondrial precursor
           [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 288

 Score =  225 bits (574), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 80/200 (40%), Positives = 123/200 (61%), Gaps = 4/200 (2%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
             +   G Y+++     V+       EL++ V    ++   +FL+      +  I D+  
Sbjct: 75  EALHKYGQYLMSCLPKYVQQFSVWKDELTIYVPPSGIIPTFTFLKYHTAAEYTQISDITA 134

Query: 63  VDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGI 122
           VD+ ++  RF+VVY+ LS ++N RLRVK    E   VPS+  +Y GA+W+EREV+D++G+
Sbjct: 135 VDYPTKDQRFEVVYNMLSIRHNSRLRVKTYADEATPVPSLCDLYDGANWYEREVYDLFGV 194

Query: 123 FFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDY-DF 181
           FF GHPDLRRI+TDYGF+GHPLRKDFP+TG+ E+ YD++ K++V  P+E+ Q  R++   
Sbjct: 195 FFVGHPDLRRIMTDYGFDGHPLRKDFPMTGYTEIRYDEEKKRIVVEPLEMTQAFRNFRGG 254

Query: 182 LSPWEGVNSLFAKEDSKDDM 201
            S WE V      +D K + 
Sbjct: 255 SSAWEQVG---PGDDLKPEA 271


>gi|91079210|ref|XP_966588.1| PREDICTED: similar to AGAP006456-PA [Tribolium castaneum]
 gi|270004834|gb|EFA01282.1| hypothetical protein TcasGA2_TC002817 [Tribolium castaneum]
          Length = 257

 Score =  225 bits (574), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 85/199 (42%), Positives = 125/199 (62%), Gaps = 1/199 (0%)

Query: 4   KIEDLGDYIVNSFSGSVRFAVN-SVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
           +++D G Y        ++     +  EL L +    ++ +  FL+D  +  F NI D+ G
Sbjct: 53  QLKDFGKYCAECLPKYIQKVQITAGDELELLIVPEGVLPVLQFLKDHHNAQFANITDIAG 112

Query: 63  VDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGI 122
           +D  SR  RF+V+Y+ LS ++N R+RVK    E   + S   IY GA+W+ERE+WDMYG+
Sbjct: 113 MDVPSREYRFEVIYNLLSLRFNSRIRVKTYTDELTPLDSACDIYKGANWYEREIWDMYGV 172

Query: 123 FFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFL 182
           FF  HPDLRRILTDYGFEGHP RKDFP++G+VE+ YDD+ K+VV  P+EL QE R ++  
Sbjct: 173 FFANHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEKKRVVVEPLELAQEFRKFELS 232

Query: 183 SPWEGVNSLFAKEDSKDDM 201
           +PWE   +      + +++
Sbjct: 233 APWEQFPNFRNAPPTAEEV 251


>gi|171682350|ref|XP_001906118.1| hypothetical protein [Podospora anserina S mat+]
 gi|170941134|emb|CAP66784.1| unnamed protein product [Podospora anserina S mat+]
          Length = 286

 Score =  225 bits (574), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 78/189 (41%), Positives = 120/189 (63%), Gaps = 1/189 (0%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
              +   G +++      ++       EL++ +    ++ + SFL+ +    F  + D+ 
Sbjct: 73  ADAMHKYGAWLMGCLPKYIQQFSVWKDELTIYICPSGVIPVFSFLKYNTSAEFTMVSDIT 132

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VDF +R  RF++VY+ LS ++N R+RVK    E   VPS+  +Y GA+W+EREV+DM+G
Sbjct: 133 AVDFPTRDQRFEIVYNLLSIRHNSRIRVKTYADEASPVPSLTPLYDGANWYEREVYDMFG 192

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD- 180
           +FF  HPDLRRI+TDYGFEGHPLRKDFP+TG+ E+ YD++ K++V  P+EL Q  R+++ 
Sbjct: 193 VFFVNHPDLRRIMTDYGFEGHPLRKDFPLTGYTEIRYDEEKKRIVTEPLELTQAFRNFEG 252

Query: 181 FLSPWEGVN 189
             S WE V 
Sbjct: 253 GSSAWEQVG 261


>gi|259487070|tpe|CBF85447.1| TPA: NADH-ubiquinone oxidoreductase 30.4 kDa subunit, mitochondrial
           [Precursor] (Eurofung) [Aspergillus nidulans FGSC A4]
          Length = 290

 Score =  225 bits (574), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 82/189 (43%), Positives = 118/189 (62%), Gaps = 1/189 (0%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
              +   G YI+      V+       EL + V    ++   +FL+      F  + D+ 
Sbjct: 76  ADSLHQYGQYIMACLPKHVQQFSVWKDELCIYVPPSGIIPTFTFLKYHTSAEFTTVSDIT 135

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD+ ++  RF+VVY+ LS +YN R+RVK    E   VPSI G+Y GA W+EREV+D++G
Sbjct: 136 AVDYPTKDQRFEVVYNLLSVRYNSRIRVKTYADEASPVPSITGLYEGALWYEREVYDLFG 195

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD- 180
           +FF GHPDLRRI+TDYGF+GHPLRKDFP+TG+ EL YD++ K++V  P+EL Q  R+++ 
Sbjct: 196 VFFTGHPDLRRIMTDYGFDGHPLRKDFPMTGYTELRYDEEKKRIVIEPLELTQAFRNFEG 255

Query: 181 FLSPWEGVN 189
             + WE V 
Sbjct: 256 GTTAWEPVG 264


>gi|238501634|ref|XP_002382051.1| NADH-ubiquinone oxidoreductase 304 kDa subunit precursor
           [Aspergillus flavus NRRL3357]
 gi|220692288|gb|EED48635.1| NADH-ubiquinone oxidoreductase 304 kDa subunit precursor
           [Aspergillus flavus NRRL3357]
          Length = 352

 Score =  225 bits (574), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 84/189 (44%), Positives = 120/189 (63%), Gaps = 1/189 (0%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
              +   G Y+++     V+       EL + V    +V L SFL+      F  I D+ 
Sbjct: 71  ADALHQYGQYVMSCLPKYVQQFTVWKDELVIYVPPSGVVPLMSFLKYHTAAEFTQISDIT 130

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VDF ++  RF+VVY+ LS ++N R+RVK    E   VPS+ G++ GA W+EREV+DM+G
Sbjct: 131 AVDFPTKDQRFEVVYNLLSVRHNSRIRVKTYADEATPVPSVTGLFEGALWYEREVYDMFG 190

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF GHPDLRRI+TDYGF+GHPLRKDFP+TG+ EL YD++ K++V  P+EL Q  R+++ 
Sbjct: 191 VFFTGHPDLRRIMTDYGFDGHPLRKDFPLTGYTELRYDEEKKRIVIEPLELTQAFRNFEG 250

Query: 182 LS-PWEGVN 189
            +  WE V 
Sbjct: 251 GTAAWEPVG 259


>gi|134079294|emb|CAK96923.1| unnamed protein product [Aspergillus niger]
          Length = 280

 Score =  225 bits (574), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 84/189 (44%), Positives = 120/189 (63%), Gaps = 1/189 (0%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
              +   G YI++     V+       EL + V    L+   +FL+      +  I D+ 
Sbjct: 67  ADSLHKYGQYIMSCLPKHVQQFSVWKDELCIYVPPSGLIPTMTFLKYHTAAEYTQISDIT 126

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
           GVDF +R  RF+VVY+ LS +YN R+RVK    E   VPS+ G++ GA W+EREV+DM+G
Sbjct: 127 GVDFPTRDQRFEVVYNMLSVRYNSRIRVKTYADEASPVPSVTGLFEGALWYEREVYDMFG 186

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF GHPDLRRI+TDYGF+GHPLRKDFP+TG+ EL Y ++ K++V  P+EL Q  R+++ 
Sbjct: 187 VFFTGHPDLRRIMTDYGFDGHPLRKDFPLTGYTELRYCEEKKRIVIEPLELTQAFRNFEG 246

Query: 182 LS-PWEGVN 189
            +  WE V+
Sbjct: 247 GTAAWEPVS 255


>gi|164422317|gb|ABY55256.1| NADH dehydrogenase ubiquinone Fe-S protein 3 [Oncorhynchus masou
           formosanus]
          Length = 255

 Score =  225 bits (574), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 90/185 (48%), Positives = 123/185 (66%), Gaps = 1/185 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
            ++   G+Y+       V+    +   EL + +    ++ + +FLRD  +  F N+IDL 
Sbjct: 49  NQLAAFGEYVAEMLPKYVQQVQVTCYNELEVMIHPDGVIPVLTFLRDHSNAQFRNMIDLT 108

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  +R NRF++VY+ LS +YN ++R+K    E   V S V ++  A+W+EREVWDMYG
Sbjct: 109 AVDIPTRQNRFEIVYNLLSLRYNSQIRLKTYTDELTPVDSSVSVHNAANWYEREVWDMYG 168

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP RKDFP++GFVE+ YDD+VK+VV  PVEL QE R +D 
Sbjct: 169 VFFANHPDLRRILTDYGFEGHPFRKDFPLSGFVEVRYDDEVKRVVAEPVELSQEFRKFDL 228

Query: 182 LSPWE 186
            SPWE
Sbjct: 229 NSPWE 233


>gi|162148809|ref|YP_001603270.1| NADH-quinone oxidoreductase subunit C [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545443|ref|YP_002277672.1| NADH (or F420H2) dehydrogenase subunit C [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787386|emb|CAP56981.1| NADH-quinone oxidoreductase chain C [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533120|gb|ACI53057.1| NADH (or F420H2) dehydrogenase, subunit C [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 213

 Score =  225 bits (573), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 87/182 (47%), Positives = 123/182 (67%), Gaps = 1/182 (0%)

Query: 20  VRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFL 79
           ++ A    GEL +     +L++L   LRDDP      ++DLCGVD+ +R+ RFDVVY+ L
Sbjct: 25  IQSAAIEGGELVVRTGRDNLIALMGMLRDDPRYACEQLMDLCGVDYPARTERFDVVYNLL 84

Query: 80  SPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGF 139
           S   N R+RV +   E   VPS+  ++P A W+ERE +D++G+ F G PDLRRILTDYGF
Sbjct: 85  SVTLNHRIRVIVTTDETNPVPSVHHLWPAATWWERECYDLFGVLFSGQPDLRRILTDYGF 144

Query: 140 EGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEGVNSLFAKEDSKD 199
           EGHPLRKDFP+TG+VE+ YD+  ++VVY PV+L Q+ R++DF SPWEG+      ++   
Sbjct: 145 EGHPLRKDFPLTGYVEVRYDEDRREVVYEPVKLTQDFRNFDFESPWEGI-LTLPGDEKAH 203

Query: 200 DM 201
           + 
Sbjct: 204 ET 205


>gi|320580130|gb|EFW94353.1| hypothetical protein HPODL_3853 [Pichia angusta DL-1]
          Length = 2655

 Score =  225 bits (573), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 81/188 (43%), Positives = 118/188 (62%), Gaps = 1/188 (0%)

Query: 3    RKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
             ++ + G YI+      ++       EL +      LV + +FL++     F   +++  
Sbjct: 2445 EQLHEFGRYIMACMPKFIQQYSVWKDELIVYCAPSGLVPVATFLKNHTSSQFTACMNITA 2504

Query: 63   VDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGI 122
             D+ SR NRFDVVY  LS ++N R+R+K   +E   +PS+V +Y GA+W ERE +D++G+
Sbjct: 2505 ADYPSRKNRFDVVYDLLSVRFNSRIRIKTFASEMTPIPSLVPLYEGANWLERETYDLFGV 2564

Query: 123  FFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFL 182
            FFE HPDLRRI+TDYGFEGHPLRKDFP TG+ E+ YD + ++VVY P+EL Q  R++   
Sbjct: 2565 FFENHPDLRRIMTDYGFEGHPLRKDFPTTGYTEVRYDSEKRRVVYEPLELTQAWRNFTVG 2624

Query: 183  SP-WEGVN 189
            S  WE V 
Sbjct: 2625 SSVWEQVG 2632


>gi|39951381|ref|XP_363407.1| hypothetical protein MGG_01333 [Magnaporthe oryzae 70-15]
 gi|145020847|gb|EDK04976.1| hypothetical protein MGG_01333 [Magnaporthe oryzae 70-15]
          Length = 291

 Score =  225 bits (573), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 81/200 (40%), Positives = 123/200 (61%), Gaps = 4/200 (2%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
              +   G ++++     V+       EL++ +    ++ + +FL+ +    F  + D+ 
Sbjct: 77  AENLHRYGQWLMSCLPKYVQQFSLWKDELTIYICPSGVIPVFNFLKYNTSAEFTTVSDIT 136

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VDF +R  RF++VY+ LS ++N R+RVK    E   VPSI  IY GA+W+EREV+DM+G
Sbjct: 137 AVDFPTRDQRFEIVYNLLSVRHNARIRVKTYADEASPVPSICSIYDGANWYEREVYDMFG 196

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD- 180
           +FF GHPDLRRI+TDYGFEGHPLRKDFP+TG+ E+ Y ++ K++V  P+EL Q  R+++ 
Sbjct: 197 VFFVGHPDLRRIMTDYGFEGHPLRKDFPLTGYTEVRYHEEKKRIVTEPLELTQAFRNFEG 256

Query: 181 FLSPWEGVNSLFAKEDSKDD 200
             S WE V       D   +
Sbjct: 257 GSSAWEQVG---PGNDRTPE 273


>gi|194749201|ref|XP_001957028.1| GF10219 [Drosophila ananassae]
 gi|190624310|gb|EDV39834.1| GF10219 [Drosophila ananassae]
          Length = 261

 Score =  225 bits (573), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 86/196 (43%), Positives = 120/196 (61%), Gaps = 1/196 (0%)

Query: 5   IEDLGDYIVNSFSGSVRFAV-NSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGV 63
           + D G Y+       V+     S  EL + +    +V +  FL+D     F N++D+ GV
Sbjct: 57  LSDFGRYVAECLPKYVQKVQLTSGDELEVLIAPEGVVPVLQFLKDHHQAQFTNLVDIAGV 116

Query: 64  DFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIF 123
           D   R +RF+VVY+ LS +YN R+RVK    E   + S   ++  A+W+ERE+WDMYG+F
Sbjct: 117 DVPCRKHRFEVVYNLLSLRYNSRIRVKTYTDELTPLDSACEVHKAANWYEREIWDMYGVF 176

Query: 124 FEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLS 183
           F  HPDLRRILTDYGFEGHP R+DFP++G+VEL YDD+ K+VV  P+EL QE R +D  +
Sbjct: 177 FANHPDLRRILTDYGFEGHPQRRDFPLSGYVELRYDDEKKRVVCEPLELAQEFRKFDLSA 236

Query: 184 PWEGVNSLFAKEDSKD 199
           PWE   +        +
Sbjct: 237 PWEQFPNFRNANPPAE 252


>gi|209733838|gb|ACI67788.1| NADH dehydrogenase iron-sulfur protein 3, mitochondrial precursor
           [Salmo salar]
          Length = 255

 Score =  225 bits (573), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 91/185 (49%), Positives = 122/185 (65%), Gaps = 1/185 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
            ++   G+Y+V      V+    +   EL + +    +  + +FLRD  +  F N+IDL 
Sbjct: 49  NQLAAFGEYVVEMLPKYVQQVQVTCYNELEVMIHPDGVAPVLTFLRDHSNAQFRNMIDLT 108

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  +R NRF++VY+ LS +YN R+R+K    E   V S V ++  A+W+EREVWDMYG
Sbjct: 109 AVDIPTRQNRFEIVYNLLSLRYNSRIRLKTYTDELTPVDSSVSVHNAANWYEREVWDMYG 168

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP RKDFP++GFVE+ YDD+VK+ V  PVEL QE R +D 
Sbjct: 169 VFFANHPDLRRILTDYGFEGHPFRKDFPLSGFVEVRYDDEVKRAVAEPVELSQEFRKFDL 228

Query: 182 LSPWE 186
            SPWE
Sbjct: 229 NSPWE 233


>gi|322698841|gb|EFY90608.1| NADH-ubiquinone oxidoreductase-like protein [Metarhizium acridum
           CQMa 102]
          Length = 282

 Score =  224 bits (572), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 79/201 (39%), Positives = 123/201 (61%), Gaps = 4/201 (1%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
              +   G +++      ++       EL++ +    ++ + +FL+ +    F  +  + 
Sbjct: 68  SDNMHRYGSWLMGCLPKYIQQFSVWKDELTIYISPSGVIPVFTFLKYNTSAEFTQMSTIT 127

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
             DF +R  RF+VVY+ LS ++N R+RVK    E   VPS+  +Y GA+W+EREV+D++G
Sbjct: 128 ACDFPTRDKRFEVVYNLLSVRHNSRIRVKTYADEASPVPSVTSLYDGANWYEREVYDLFG 187

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD- 180
           +FF GHPDLRRI+TDYGFEGHPLRKDFP+TG+ E+ YD++ K++V  P+EL Q  R+++ 
Sbjct: 188 VFFAGHPDLRRIMTDYGFEGHPLRKDFPLTGYTEIRYDEEKKRIVTEPLELTQAFRNFEG 247

Query: 181 FLSPWEGVNSLFAKEDSKDDM 201
             S WE V      ED + D 
Sbjct: 248 GSSAWEMVG---PGEDRRPDT 265


>gi|169769188|ref|XP_001819064.1| NADH-ubiquinone oxidoreductase subunit [Aspergillus oryzae RIB40]
 gi|83766922|dbj|BAE57062.1| unnamed protein product [Aspergillus oryzae]
          Length = 284

 Score =  224 bits (572), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 84/189 (44%), Positives = 120/189 (63%), Gaps = 1/189 (0%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
              +   G Y+++     V+       EL + V    +V L SFL+      F  I D+ 
Sbjct: 71  ADALHQYGQYVMSCLPKYVQQFTVWKDELVIYVPPSGVVPLMSFLKYHTAAEFTQISDIT 130

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VDF ++  RF+VVY+ LS ++N R+RVK    E   VPS+ G++ GA W+EREV+DM+G
Sbjct: 131 AVDFPTKDQRFEVVYNLLSVRHNSRIRVKTYADEATPVPSVTGLFEGALWYEREVYDMFG 190

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF GHPDLRRI+TDYGF+GHPLRKDFP+TG+ EL YD++ K++V  P+EL Q  R+++ 
Sbjct: 191 VFFTGHPDLRRIMTDYGFDGHPLRKDFPLTGYTELRYDEEKKRIVIEPLELTQAFRNFEG 250

Query: 182 LS-PWEGVN 189
            +  WE V 
Sbjct: 251 GTAAWEPVG 259


>gi|296536154|ref|ZP_06898282.1| NADH-quinone oxidoreductase subunit C [Roseomonas cervicalis ATCC
           49957]
 gi|296263525|gb|EFH10022.1| NADH-quinone oxidoreductase subunit C [Roseomonas cervicalis ATCC
           49957]
          Length = 221

 Score =  224 bits (572), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 91/179 (50%), Positives = 121/179 (67%), Gaps = 2/179 (1%)

Query: 20  VRFAVNSVGE-LSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHF 78
           V  +  + GE + L V    L ++   LRDDP   F   +D+CGVD+ +R+ RFDVVY+ 
Sbjct: 35  VTASRIARGEEVELRVRREALHAVLQMLRDDPRLAFEQCMDICGVDWPTRAARFDVVYNL 94

Query: 79  LSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYG 138
           LS  +N R+RV         V ++  ++P A WFERE WDMYGI F+G PDLRRILTDYG
Sbjct: 95  LSLTHNHRIRVITETDAATPVATVCDLWPAATWFEREAWDMYGIVFDGQPDLRRILTDYG 154

Query: 139 FEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEGVNSLFAKEDS 197
           FEGHPLRKDFP+TGFVE+ YD + ++VVY PV+L Q+ R++DFLSPWEG+      ++ 
Sbjct: 155 FEGHPLRKDFPLTGFVEVRYDAERQQVVYEPVKLQQDFRNFDFLSPWEGMT-TLPGDEK 212


>gi|322710830|gb|EFZ02404.1| NADH-ubiquinone oxidoreductase-like protein [Metarhizium anisopliae
           ARSEF 23]
          Length = 281

 Score =  224 bits (572), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 79/201 (39%), Positives = 123/201 (61%), Gaps = 4/201 (1%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
              +   G +++      ++       EL++ +    ++ + +FL+ +    F  +  + 
Sbjct: 68  SDNMHRYGSWLMGCLPKYIQQFSVWKDELTIYISPSGVIPVFTFLKYNTSAEFTQMSTIT 127

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
             DF +R  RF+VVY+ LS ++N R+RVK    E   VPS+  +Y GA+W+EREV+D++G
Sbjct: 128 ACDFPTRDKRFEVVYNLLSVRHNSRIRVKTYADEASPVPSVTSLYDGANWYEREVYDLFG 187

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD- 180
           +FF GHPDLRRI+TDYGFEGHPLRKDFP+TG+ E+ YD++ K++V  P+EL Q  R+++ 
Sbjct: 188 VFFAGHPDLRRIMTDYGFEGHPLRKDFPLTGYTEIRYDEEKKRIVTEPLELTQAFRNFEG 247

Query: 181 FLSPWEGVNSLFAKEDSKDDM 201
             S WE V      ED + D 
Sbjct: 248 GSSAWEMVG---PGEDRRPDT 265


>gi|50554965|ref|XP_504891.1| YALI0F02123p [Yarrowia lipolytica]
 gi|6689654|emb|CAB65522.1| NUGM protein [Yarrowia lipolytica]
 gi|49650761|emb|CAG77693.1| YALI0F02123p [Yarrowia lipolytica]
          Length = 281

 Score =  224 bits (571), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 89/187 (47%), Positives = 126/187 (67%), Gaps = 1/187 (0%)

Query: 4   KIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGV 63
            +     YI+ +    ++       EL+L V    ++ + +FLRD+    + +IID+  V
Sbjct: 70  DLHQYAKYIMAALPKYIQGFSVWKDELTLHVAPSAVIPVTTFLRDNTSTQYKSIIDITAV 129

Query: 64  DFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIF 123
           D+ SR NRF+VVY+FLS ++N R+R+K    E   VPSI  +Y GA+WFERE +DMYG+F
Sbjct: 130 DYPSRENRFEVVYNFLSVRHNSRIRLKTYATEVTPVPSITCLYEGANWFEREAYDMYGVF 189

Query: 124 FEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLS 183
           FEGHPDLRRI+TDYGFEGHPLRKDFP+TG+ E+ +D++ ++VVY P+EL Q  R++   S
Sbjct: 190 FEGHPDLRRIMTDYGFEGHPLRKDFPLTGYTEVRWDEEKRRVVYEPLELTQAFRNFSAGS 249

Query: 184 -PWEGVN 189
             WE V 
Sbjct: 250 TAWEPVG 256


>gi|225709662|gb|ACO10677.1| NADH dehydrogenase iron-sulfur protein 3, mitochondrial precursor
           [Caligus rogercresseyi]
 gi|225709712|gb|ACO10702.1| NADH dehydrogenase iron-sulfur protein 3, mitochondrial precursor
           [Caligus rogercresseyi]
          Length = 266

 Score =  224 bits (571), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 88/199 (44%), Positives = 127/199 (63%), Gaps = 1/199 (0%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAV-NSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIID 59
           M + + D G Y+       V+     +  EL + +    +V + SFL+D  +  F N++D
Sbjct: 55  MRQNLSDFGQYVAECMPKYVQKIQLTAGDELEILIHPDGVVPIISFLKDHHNAEFTNLVD 114

Query: 60  LCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDM 119
           LCG+D  +R +RF+++Y+ LS ++N R+RVK    E   + SIV I+  A+W+EREVWDM
Sbjct: 115 LCGMDVPTRKHRFEIIYNLLSLRFNSRIRVKTYTDELTPIDSIVDIHKAANWYEREVWDM 174

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDY 179
           YG++F  HPDLRRILTDYGFEGHPLRKDFP+TG+ EL YD + +++V  PVEL QE+R +
Sbjct: 175 YGVYFANHPDLRRILTDYGFEGHPLRKDFPLTGYYELRYDMEHRRIVQEPVELAQEYRKF 234

Query: 180 DFLSPWEGVNSLFAKEDSK 198
           D  +PWE          + 
Sbjct: 235 DLAAPWEQFPQFREPLQAA 253


>gi|50409157|ref|XP_456843.1| DEHA2A11814p [Debaryomyces hansenii CBS767]
 gi|49652507|emb|CAG84818.1| DEHA2A11814p [Debaryomyces hansenii]
          Length = 284

 Score =  224 bits (570), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 86/189 (45%), Positives = 119/189 (62%), Gaps = 1/189 (0%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
             ++   G YI+      ++       EL + V    L     FL++     F  ++D+ 
Sbjct: 69  SEELHKFGKYIMGCLPKFIQQFSVWKDELVIYVAPSALRPTMMFLKNHTAAQFKAVMDVT 128

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
             D+ SR+NRFDVVY+ LS ++N R+RVK   +E   VPSIV ++ G +WFERE +D++G
Sbjct: 129 AADYPSRTNRFDVVYNMLSVRHNSRIRVKTYASEVSPVPSIVPLFQGTNWFERETYDLFG 188

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           IFFE HPDLRRI+TDYGFEGHPLRKDFP TG+ E+ YD++ K+VVY P+EL Q  R++  
Sbjct: 189 IFFEDHPDLRRIMTDYGFEGHPLRKDFPTTGYTEVRYDEEKKRVVYEPLELSQAFRNFAV 248

Query: 182 LSP-WEGVN 189
            S  WE V 
Sbjct: 249 GSSVWEPVG 257


>gi|193657123|ref|XP_001952447.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 3,
           mitochondrial-like [Acyrthosiphon pisum]
          Length = 255

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 84/195 (43%), Positives = 126/195 (64%), Gaps = 1/195 (0%)

Query: 8   LGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFL 66
            G+++       ++    S   EL L +    ++ +  FL++  +C F N+ DLC VD  
Sbjct: 53  FGNFVAECLPKYIQKIQISSKNELELLIAPEGVLPVFHFLKNQTNCQFANLSDLCAVDVP 112

Query: 67  SRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEG 126
            RSNRF++VY+ LS ++N R+RVK    E   + SI  IY  A+W+ERE+WDM+G+FF  
Sbjct: 113 QRSNRFEIVYNLLSLRFNTRIRVKTYTDELTPIDSITSIYEAANWYEREIWDMFGVFFTN 172

Query: 127 HPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWE 186
           HPDLRRILTDYGFEGHP RKDFP++G+VE+ YDD+ K+VV  P+E+ QE R ++  +PWE
Sbjct: 173 HPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEKKRVVVEPLEMSQEFRRFELSTPWE 232

Query: 187 GVNSLFAKEDSKDDM 201
              +  +   + +++
Sbjct: 233 QFPNFRSASPTTEEV 247


>gi|94496480|ref|ZP_01303057.1| NADH (or F420H2) dehydrogenase, subunit C [Sphingomonas sp. SKA58]
 gi|94424226|gb|EAT09250.1| NADH (or F420H2) dehydrogenase, subunit C [Sphingomonas sp. SKA58]
          Length = 278

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 88/197 (44%), Positives = 123/197 (62%), Gaps = 2/197 (1%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +  I+ + D I       +   V+   ELS  V   +L +    LRD  H  +  ++++ 
Sbjct: 8   IATIDGIADEIAALLGSMLVETVDHADELSFTVVRAELANAMVTLRDMGH--YQQLMEIA 65

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
           GVD+  R+ RF+V YH LS   N R+RVK++  E   VP++  I+P A W EREV+DMYG
Sbjct: 66  GVDYPDRAERFEVCYHLLSVTRNHRIRVKVSTDENMPVPTVTHIWPVAGWLEREVFDMYG 125

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           + FEG+ DLRRILTDYGF GHP RKDFP+TG+VEL Y ++ K+VVY PV L Q+ R +DF
Sbjct: 126 VVFEGNTDLRRILTDYGFRGHPQRKDFPLTGYVELRYSEEDKRVVYEPVRLAQDFRSFDF 185

Query: 182 LSPWEGVNSLFAKEDSK 198
           +SPWEG   +   ++  
Sbjct: 186 MSPWEGAQYVLPGDEKA 202


>gi|309262569|ref|XP_003085834.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 3,
           mitochondrial-like [Mus musculus]
          Length = 233

 Score =  223 bits (568), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 88/196 (44%), Positives = 125/196 (63%), Gaps = 1/196 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +++    +Y+       V+    S + +L + +    ++   +FLRD  +  F ++ DL 
Sbjct: 25  KQLSAFAEYVAEILPKYVQQVQVSCLDKLEICIHHDGVIPTLTFLRDHTNAQFKSLADLT 84

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  +R NRF++VY+ LS ++N R+RVK    E   + SIV ++  A+W+EREVWDM+G
Sbjct: 85  AVDVPTRQNRFEIVYNLLSLRFNSRIRVKTYADELTPIDSIVSVHIAANWYEREVWDMFG 144

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP RKDFP+ G+VEL YDD+VK+VV  PVEL QE R +D 
Sbjct: 145 VFFFNHPDLRRILTDYGFEGHPFRKDFPLAGYVELRYDDEVKRVVAEPVELAQEFRKFDL 204

Query: 182 LSPWEGVNSLFAKEDS 197
            SPWE   +     +S
Sbjct: 205 NSPWEAFPAYRQPPES 220


>gi|268568132|ref|XP_002640168.1| C. briggsae CBR-NUO-2 protein [Caenorhabditis briggsae]
 gi|187029272|emb|CAP31615.1| CBR-NUO-2 protein [Caenorhabditis briggsae AF16]
          Length = 399

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 79/185 (42%), Positives = 117/185 (63%), Gaps = 1/185 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNSVG-ELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
            ++ + G Y        V+    + G EL L +    +V + SFL+ +    F N+  + 
Sbjct: 185 ERLANFGKYAAECLPKFVQKVQFAAGDELELLIHPSGVVPVLSFLKGNHSAQFTNLTFIT 244

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
           G+D  +R NR +V+Y   S ++N R+RV+    E   + S+  ++ GADW+EREV+DMYG
Sbjct: 245 GMDVPTRKNRLEVIYALYSVRFNARVRVRTYTDEIAPIDSVTPVFKGADWYEREVYDMYG 304

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           ++F  HPDLRRILTDYGFEGHP RKD+P++G+ E+ YD ++K+VVY P E+ QE R +D 
Sbjct: 305 VWFNNHPDLRRILTDYGFEGHPFRKDYPLSGYNEVRYDPELKRVVYEPSEMAQEFRKFDL 364

Query: 182 LSPWE 186
            SPWE
Sbjct: 365 NSPWE 369


>gi|326387460|ref|ZP_08209069.1| NADH dehydrogenase, subunit C [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208116|gb|EGD58924.1| NADH dehydrogenase, subunit C [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 210

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 80/190 (42%), Positives = 122/190 (64%), Gaps = 2/190 (1%)

Query: 10  DYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRS 69
           D +++     +  +    GE+ L V   ++ ++   LRD     F  ++D+ GVD+ SR+
Sbjct: 19  DSLLSRLGDVIVASKEEHGEIVLTVKRDEIENVLRTLRDKE--QFQQLMDIAGVDYPSRA 76

Query: 70  NRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPD 129
            RF+VVY  LS   N RL VK++  E   VP++  ++P A W+ERE +D+YG+ F G+ D
Sbjct: 77  ERFEVVYCLLSVTRNLRLIVKVSTDEATPVPTVTTLWPNAGWYEREAYDLYGVLFAGNTD 136

Query: 130 LRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEGVN 189
           LRRILTDYGF+GHP RKDFP+TG+VEL Y ++ ++VVY PV L Q+ R +D+ SPWEG +
Sbjct: 137 LRRILTDYGFQGHPFRKDFPLTGYVELRYSEEDQRVVYEPVRLAQDLRQFDYQSPWEGPH 196

Query: 190 SLFAKEDSKD 199
            +   ++  +
Sbjct: 197 YVLPGDEKAE 206


>gi|302407618|ref|XP_003001644.1| NADH dehydrogenase iron-sulfur protein [Verticillium albo-atrum
           VaMs.102]
 gi|261359365|gb|EEY21793.1| NADH dehydrogenase iron-sulfur protein [Verticillium albo-atrum
           VaMs.102]
          Length = 284

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 77/200 (38%), Positives = 124/200 (62%), Gaps = 4/200 (2%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
              +   G +++      V+       EL++ +    ++ + SFL+ +    F  +  + 
Sbjct: 73  SDNLHKYGAWVMGCLPKYVQQFSVWKDELTIYIPPSGVIPVISFLKYNTSAEFTQVSTVT 132

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD+ +R  RF+++Y+ LS +YN R+RVK    E   VPSI G++ GA+W+ERE +D++G
Sbjct: 133 AVDYPTRDQRFEIIYNLLSVRYNSRIRVKTYADEVSPVPSITGLFDGANWYEREAYDLFG 192

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD- 180
           IFF GHPDLRRI+TDYGFEGHPLRKDFP+TG+ E+ +D++ K++V  P+EL Q  R+++ 
Sbjct: 193 IFFVGHPDLRRIMTDYGFEGHPLRKDFPLTGYTEIRFDEEKKRIVTEPLELTQAFRNFEG 252

Query: 181 FLSPWEGVNSLFAKEDSKDD 200
             S WE +      +D + +
Sbjct: 253 GTSAWEQIG---PGDDRRPE 269


>gi|85086366|ref|XP_957689.1| NADH:ubiquinone oxidoreductase 30.4kD subunit [Neurospora crassa
           OR74A]
 gi|67477363|sp|P23710|NDUS3_NEUCR RecName: Full=NADH-ubiquinone oxidoreductase 30.4 kDa subunit,
           mitochondrial; AltName: Full=CI-31kD; AltName:
           Full=Complex I-30kD; Flags: Precursor
 gi|28918783|gb|EAA28453.1| NADH:ubiquinone oxidoreductase 30.4kD subunit [Neurospora crassa
           OR74A]
          Length = 283

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 76/189 (40%), Positives = 121/189 (64%), Gaps = 1/189 (0%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
              +   G +++      ++       EL++ +    ++ + SFL+ +    +  + D+ 
Sbjct: 70  ADNLHKYGSWLMGCLPKYIQQFSVWKDELTIYISPAGVIPVFSFLKYNTAAEYTQVSDIT 129

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VDF ++  RF+VVY+ LS ++N R+RVK    E   VPSI  +Y GA+W+EREV+D++G
Sbjct: 130 AVDFPTKDQRFEVVYNLLSVRHNSRIRVKTYADEVSPVPSITPLYDGANWYEREVYDLFG 189

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD- 180
           +FF GHPDLRRI+TDYGF+GHPLRKDFP+TG+ E+ YD++ K++V  P+E+ Q  R+++ 
Sbjct: 190 VFFTGHPDLRRIMTDYGFDGHPLRKDFPMTGYTEIRYDEEKKRIVTEPLEMTQAFRNFEG 249

Query: 181 FLSPWEGVN 189
             S WE V 
Sbjct: 250 GSSAWEQVG 258


>gi|332020270|gb|EGI60704.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 3,
           mitochondrial [Acromyrmex echinatior]
          Length = 263

 Score =  222 bits (566), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 83/201 (41%), Positives = 127/201 (63%), Gaps = 1/201 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNSVG-ELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
            ++ + G YI +     ++    + G EL L +    ++   +FL+D  +  FVN+ D+ 
Sbjct: 60  DRLINFGRYINDCLPKYIQQVQLAAGDELELLITPDGIIPTFTFLKDHHNTQFVNLSDIT 119

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            +D  SR  RF++VY+ LS +YN R+RVK    E   V S+  ++  A+W+ERE+WDM+G
Sbjct: 120 ALDVPSRQCRFELVYNLLSLRYNSRIRVKTYTNELTPVDSLYSVFQAANWYEREIWDMFG 179

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGF+GHPLRKDFP++G+VE+ YDD+ K++V  P+EL QE R ++ 
Sbjct: 180 VFFSNHPDLRRILTDYGFQGHPLRKDFPLSGYVEVRYDDEHKRIVIEPLELTQEFRKFEL 239

Query: 182 LSPWEGVNSLFAKEDSKDDMS 202
            +PWE   +        + +S
Sbjct: 240 AAPWEQFPNFRDAPAIAEPIS 260


>gi|103486795|ref|YP_616356.1| NADH (or F420H2) dehydrogenase, subunit C [Sphingopyxis alaskensis
           RB2256]
 gi|98976872|gb|ABF53023.1| NADH (or F420H2) dehydrogenase, subunit C [Sphingopyxis alaskensis
           RB2256]
          Length = 274

 Score =  222 bits (566), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 85/171 (49%), Positives = 119/171 (69%), Gaps = 2/171 (1%)

Query: 28  GELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRL 87
           GE S+ V    +  +   LRD+    +  ++++ GVD+  R  RF+VVYH LS   N RL
Sbjct: 9   GEDSITVRREAIAGVMISLRDN--LDYQQLMEIAGVDYPDRPERFEVVYHLLSVTKNHRL 66

Query: 88  RVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKD 147
           RV+++  E   VPSIV ++P A W EREV+DMYG+ F G+PDLRRILTDYGF+GHP RKD
Sbjct: 67  RVRVSTDEATPVPSIVPVWPVAGWLEREVFDMYGVLFAGNPDLRRILTDYGFQGHPQRKD 126

Query: 148 FPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEGVNSLFAKEDSK 198
           FP+TG++EL Y ++ K+VVY PV+L Q+ R++DFLSPWEG + +   ++  
Sbjct: 127 FPLTGYIELRYSEEDKRVVYEPVKLAQDFRNFDFLSPWEGADYVLPGDEKA 177


>gi|154274616|ref|XP_001538159.1| NADH-ubiquinone oxidoreductase 30.4 kDa subunit, mitochondrial
           precursor [Ajellomyces capsulatus NAm1]
 gi|150414599|gb|EDN09961.1| NADH-ubiquinone oxidoreductase 30.4 kDa subunit, mitochondrial
           precursor [Ajellomyces capsulatus NAm1]
          Length = 280

 Score =  222 bits (566), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 78/198 (39%), Positives = 120/198 (60%), Gaps = 1/198 (0%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
              +   G Y+++     ++       EL++ +    ++   +FL+      +  ++D+ 
Sbjct: 74  SASLHKYGQYLMSCLPKYIQQFSVWKDELTIYIPPSGVIPTFTFLKQHTAAEYTQVVDIT 133

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VDF  R  RF+VVY+ LS ++N R+RVK    E   VPSI  +Y GA W+EREV+D++G
Sbjct: 134 AVDFPGRDQRFEVVYNLLSVRHNSRIRVKTYADEATPVPSITCLYDGALWYEREVYDLFG 193

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD- 180
           +FF  HPDLRRI+TDYGF+GHPLRKDFP+TG+ E+ YD++ K++V  P+E+ Q  RD+  
Sbjct: 194 VFFVDHPDLRRIMTDYGFDGHPLRKDFPLTGYTEIRYDEEKKRIVVEPLEMTQAFRDFQG 253

Query: 181 FLSPWEGVNSLFAKEDSK 198
             S WE +     K  S+
Sbjct: 254 GSSAWEQIGDGIDKTPSE 271


>gi|324514811|gb|ADY45996.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 [Ascaris
           suum]
          Length = 260

 Score =  222 bits (566), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 82/185 (44%), Positives = 120/185 (64%), Gaps = 1/185 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNSVG-ELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
            ++ + G Y        V+    + G EL L +    +V + +FL+ +    F N+  +C
Sbjct: 44  ERLANFGRYAAECLPKFVQRVQFAGGDELELLIHPSGVVPVMAFLKGNHSAQFTNLTFIC 103

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
           GVD  +R  RF+VVY  LS ++N R+RV+    E   + SI  ++ GA+W+EREV+D+YG
Sbjct: 104 GVDVPTRKYRFEVVYALLSTRFNARIRVRTYTDEIAPIESITSVFKGANWYEREVYDLYG 163

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           ++F  HPDLRRILTDYGFEGHPLRKDFP++G+ E+ YD ++K++VY P EL QE R +D 
Sbjct: 164 VWFNNHPDLRRILTDYGFEGHPLRKDFPLSGYNEVRYDPELKRIVYEPTELAQEFRKFDL 223

Query: 182 LSPWE 186
            +PWE
Sbjct: 224 ETPWE 228


>gi|225715412|gb|ACO13552.1| NADH dehydrogenase iron-sulfur protein 3, mitochondrial precursor
           [Esox lucius]
          Length = 255

 Score =  222 bits (566), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 92/185 (49%), Positives = 124/185 (67%), Gaps = 1/185 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +++   G+Y+       V+    +   EL + +    +V + +FLRD  +  F N+IDL 
Sbjct: 49  KQLAVFGEYVAEMLPKYVQQVQVTCYNELEVMIHPDGVVPVLTFLRDHTNAQFRNMIDLT 108

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  SR NRF++VY+ LS +YN R+R+K    E   V S V ++  A+W+EREVWDMYG
Sbjct: 109 AVDIPSRQNRFEIVYNLLSLRYNSRIRLKTYTDELTPVDSAVSVHNAANWYEREVWDMYG 168

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP RKDFP++GFVE+ YDD+VK+VV  PVEL +E R +D 
Sbjct: 169 VFFANHPDLRRILTDYGFEGHPFRKDFPLSGFVEVRYDDEVKRVVAEPVELAREFRKFDL 228

Query: 182 LSPWE 186
            SPWE
Sbjct: 229 NSPWE 233


>gi|71990788|ref|NP_491881.2| NADH Ubiquinone Oxidoreductase family member (nuo-2)
           [Caenorhabditis elegans]
 gi|51988139|gb|AAB52474.2| Nadh ubiquinone oxidoreductase protein 2, isoform a, confirmed by
           transcript evidence [Caenorhabditis elegans]
          Length = 445

 Score =  222 bits (565), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 80/185 (43%), Positives = 116/185 (62%), Gaps = 1/185 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNSVG-ELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
            ++ + G Y        V+    + G EL L +    +V + SFL+ +    F N+  + 
Sbjct: 230 ERLANFGKYAAECLPKFVQKVQFAAGDELELLIHPSGVVPVLSFLKGNHSAQFTNLTFIT 289

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
           G+D  +R NR +V+Y   S ++N R+RV+    E   + S   ++ GADWFEREV+DMYG
Sbjct: 290 GMDVPTRKNRLEVIYSLYSVRFNARVRVRTYTDEIAPIDSATPVFKGADWFEREVYDMYG 349

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           ++F  HPDLRRILTDYGFEGHP RKD+P++G+ E+ YD ++K+VVY P EL QE R +D 
Sbjct: 350 VWFNNHPDLRRILTDYGFEGHPFRKDYPLSGYNEVRYDPELKRVVYEPSELAQEFRKFDL 409

Query: 182 LSPWE 186
            +PWE
Sbjct: 410 NTPWE 414


>gi|32563621|ref|NP_871796.1| NADH Ubiquinone Oxidoreductase family member (nuo-2)
           [Caenorhabditis elegans]
 gi|27670051|gb|AAO21397.1| Nadh ubiquinone oxidoreductase protein 2, isoform b, confirmed by
           transcript evidence [Caenorhabditis elegans]
          Length = 268

 Score =  222 bits (565), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 80/185 (43%), Positives = 116/185 (62%), Gaps = 1/185 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNSVG-ELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
            ++ + G Y        V+    + G EL L +    +V + SFL+ +    F N+  + 
Sbjct: 53  ERLANFGKYAAECLPKFVQKVQFAAGDELELLIHPSGVVPVLSFLKGNHSAQFTNLTFIT 112

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
           G+D  +R NR +V+Y   S ++N R+RV+    E   + S   ++ GADWFEREV+DMYG
Sbjct: 113 GMDVPTRKNRLEVIYSLYSVRFNARVRVRTYTDEIAPIDSATPVFKGADWFEREVYDMYG 172

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           ++F  HPDLRRILTDYGFEGHP RKD+P++G+ E+ YD ++K+VVY P EL QE R +D 
Sbjct: 173 VWFNNHPDLRRILTDYGFEGHPFRKDYPLSGYNEVRYDPELKRVVYEPSELAQEFRKFDL 232

Query: 182 LSPWE 186
            +PWE
Sbjct: 233 NTPWE 237


>gi|322796534|gb|EFZ19008.1| hypothetical protein SINV_03420 [Solenopsis invicta]
          Length = 270

 Score =  222 bits (565), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 84/202 (41%), Positives = 128/202 (63%), Gaps = 1/202 (0%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVG-ELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           +  + + G YI +     ++    + G EL L +    ++ + +FL+D  +  FVN+ D+
Sbjct: 67  IDHLINFGRYINDCLPKYIQQVQMAAGDELELLIAPDGIIPILTFLKDHHNTQFVNLADI 126

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
             +D  SR  RF++VY+ LS +YN R+R+K    E   V S   ++  ADW+ERE+WDM+
Sbjct: 127 TAIDVPSRQYRFELVYNLLSLRYNSRIRIKTYTDELTPVDSAYSVFQVADWYEREIWDMF 186

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           G+FF  HPDLRRILTDYGFEGHPLRKDFP++G+VE+ YDD+ K++V  P+EL QE R ++
Sbjct: 187 GVFFSNHPDLRRILTDYGFEGHPLRKDFPLSGYVEVRYDDECKRIVIEPLELAQEFRKFE 246

Query: 181 FLSPWEGVNSLFAKEDSKDDMS 202
             +PWE   +      + + +S
Sbjct: 247 LAAPWEQFPNFRDAPPAAETIS 268


>gi|225557350|gb|EEH05636.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus G186AR]
          Length = 288

 Score =  221 bits (564), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 78/198 (39%), Positives = 120/198 (60%), Gaps = 1/198 (0%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
              +   G Y+++     ++       EL++ +    ++   +FL+      +  ++D+ 
Sbjct: 74  SASLHKYGQYLMSCLPKYIQQFSVWKDELTIYIPPSGVIPTFTFLKQHTAAEYTQVVDIT 133

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VDF  R  RF+VVY+ LS ++N R+RVK    E   VPSI  +Y GA W+EREV+D++G
Sbjct: 134 AVDFPGRDQRFEVVYNLLSVRHNSRIRVKTYADEATPVPSITCLYDGALWYEREVYDLFG 193

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD- 180
           +FF  HPDLRRI+TDYGF+GHPLRKDFP+TG+ E+ YD++ K++V  P+E+ Q  RD+  
Sbjct: 194 VFFVDHPDLRRIMTDYGFDGHPLRKDFPLTGYTEIRYDEEKKRIVVEPLEMTQAFRDFQG 253

Query: 181 FLSPWEGVNSLFAKEDSK 198
             S WE +     K  S+
Sbjct: 254 GSSAWEQIGDGIDKTPSE 271


>gi|240277991|gb|EER41498.1| NADH-ubiquinone oxidoreductase subunit [Ajellomyces capsulatus
           H143]
 gi|325096052|gb|EGC49362.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus H88]
          Length = 288

 Score =  221 bits (564), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 78/198 (39%), Positives = 120/198 (60%), Gaps = 1/198 (0%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
              +   G Y+++     ++       EL++ +    ++   +FL+      +  ++D+ 
Sbjct: 74  SASLHKYGQYLMSCLPKYIQQFSVWKDELTIYIPPSGVIPTFTFLKQHTAAEYTQVVDIT 133

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VDF  R  RF+VVY+ LS ++N R+RVK    E   VPSI  +Y GA W+EREV+D++G
Sbjct: 134 AVDFPGRDQRFEVVYNLLSVRHNSRIRVKTYADEATPVPSITCLYDGALWYEREVYDLFG 193

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD- 180
           +FF  HPDLRRI+TDYGF+GHPLRKDFP+TG+ E+ YD++ K++V  P+E+ Q  RD+  
Sbjct: 194 VFFVDHPDLRRIMTDYGFDGHPLRKDFPLTGYTEIRYDEEKKRIVVEPLEMTQAFRDFQG 253

Query: 181 FLSPWEGVNSLFAKEDSK 198
             S WE +     K  S+
Sbjct: 254 GSSAWEQIGDGIDKTPSE 271


>gi|329889334|ref|ZP_08267677.1| NADH-quinone oxidoreductase subunit C [Brevundimonas diminuta ATCC
           11568]
 gi|328844635|gb|EGF94199.1| NADH-quinone oxidoreductase subunit C [Brevundimonas diminuta ATCC
           11568]
          Length = 177

 Score =  221 bits (564), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 88/175 (50%), Positives = 121/175 (69%), Gaps = 4/175 (2%)

Query: 26  SVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNR 85
           + GEL+L      +V + + LRD     F   +D+CG D+  R+ RF+VVYH LS     
Sbjct: 2   AYGELTLIAQREKIVEVMTALRD--QFGFQQCMDVCGADYPDRAERFEVVYHLLSLTRAA 59

Query: 86  RLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLR 145
           R+RVK++  E K VPS+  +YP A WFERE +DMYG+ F  HPD+RRILTDYGF+GHPLR
Sbjct: 60  RVRVKVSTDEVKPVPSVSSVYPSAGWFEREAFDMYGMIFSDHPDMRRILTDYGFQGHPLR 119

Query: 146 KDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEGVNS--LFAKEDSK 198
           KDFP+TG+VE+ YD++ K++VY PV+L QE R++DFLSPWEG +   +   ++  
Sbjct: 120 KDFPMTGYVEVRYDEEQKRIVYEPVKLTQEFRNFDFLSPWEGADYPTVLPGDEKA 174


>gi|67043755|gb|AAY63976.1| NADH dehydrogenase [Lysiphlebus testaceipes]
          Length = 267

 Score =  221 bits (563), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 84/200 (42%), Positives = 126/200 (63%), Gaps = 1/200 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNSVG-ELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
            +++D G Y+       V+    + G EL + +    +    +FLRD  +  +  ++D+ 
Sbjct: 57  TQLKDFGHYVAECLPKYVQKVQIAAGDELEVCIAPEGIRPTMAFLRDHHNAQYSILVDIT 116

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  S+  RF+++Y  LS +YN R+RVK    E   V S+V ++  A+W+EREVWDMYG
Sbjct: 117 AVDVPSKPFRFELIYCLLSLRYNTRIRVKSYTDELTPVDSVVPVFKSANWYEREVWDMYG 176

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           I F  HPD+RRILTDYGFEGHPLRKDFP++GFVE+ YDD+VK++V  P+EL QE R ++ 
Sbjct: 177 ILFSDHPDMRRILTDYGFEGHPLRKDFPLSGFVEVRYDDEVKRIVAEPLELAQEFRRFEL 236

Query: 182 LSPWEGVNSLFAKEDSKDDM 201
            +PWE   +      + +++
Sbjct: 237 SAPWEQFPNFRDPVKASEEI 256


>gi|225718856|gb|ACO15274.1| NADH dehydrogenase iron-sulfur protein 3, mitochondrial precursor
           [Caligus clemensi]
          Length = 264

 Score =  221 bits (563), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 89/200 (44%), Positives = 130/200 (65%), Gaps = 1/200 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAV-NSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           + + D G Y+  S    V+     +  EL L +    ++ + SFL+D  +  F N++DLC
Sbjct: 56  QNLSDFGQYVAESMPKYVQKVQLTAGDELELLIHPDGVIPVISFLKDHHNAQFTNLVDLC 115

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
           G+D  +R NRF+++Y+ LS ++N R+RVK    E   + SI  I+  A+W+EREVWDMYG
Sbjct: 116 GLDVPTRKNRFEIIYNLLSLRFNSRVRVKTYTDELSPIDSIEDIHKAANWYEREVWDMYG 175

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           ++F  HPDLRRILTDYGFEGHPLRKDFP+TGF EL YD + +++V  PVEL QE+R +D 
Sbjct: 176 VYFSNHPDLRRILTDYGFEGHPLRKDFPLTGFYELRYDMEHQRIVQEPVELAQEYRKFDL 235

Query: 182 LSPWEGVNSLFAKEDSKDDM 201
            +PWE   +      + +++
Sbjct: 236 AAPWEQFPNFREPLSAAEEV 255


>gi|159464845|ref|XP_001690652.1| NADH:ubiquinone oxidoreductase ND9 subunit [Chlamydomonas
           reinhardtii]
 gi|158280152|gb|EDP05911.1| NADH:ubiquinone oxidoreductase ND9 subunit [Chlamydomonas
           reinhardtii]
          Length = 282

 Score =  221 bits (562), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 92/187 (49%), Positives = 122/187 (65%), Gaps = 7/187 (3%)

Query: 7   DLGDYIVNSFSGSVR-------FAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIID 59
            L DYI+ +    V+        +     E ++      LV L  FLRD  +  F  ++D
Sbjct: 92  QLTDYIIKTVPKFVKMAVTGPAQSSVLYQEPTIYTTPESLVPLMVFLRDHTNTQFKCLLD 151

Query: 60  LCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDM 119
           +  VDF  R+ RF+VVYH LSP++N R+RVK+ V E  +VP++  ++  A+WFERE WDM
Sbjct: 152 VTAVDFPERAARFEVVYHLLSPRWNNRIRVKVCVDEVTAVPTLCKVFNTANWFERETWDM 211

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDY 179
           +G+FF GHPDLRRILTDYGF GHPLRKDFP+TG+ E+ YD   K+VV  P+EL QE R +
Sbjct: 212 FGVFFSGHPDLRRILTDYGFTGHPLRKDFPMTGYQEVRYDYGKKRVVSEPLELTQEFRYF 271

Query: 180 DFLSPWE 186
           DF SPWE
Sbjct: 272 DFNSPWE 278


>gi|115975222|ref|XP_001178712.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein
           3, 30kDa (NADH-coenzyme Q reductase) [Strongylocentrotus
           purpuratus]
          Length = 258

 Score =  221 bits (562), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 90/207 (43%), Positives = 134/207 (64%), Gaps = 8/207 (3%)

Query: 4   KIEDLGDYIVNSFSGSVRFAVNSVG-ELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
           ++ + G+Y+ +     V+    + G EL + +    ++ + +FLRD  +  F ++ID+  
Sbjct: 50  RLVEFGNYVADCLPKYVQEVQVTYGNELEVMIHPEGIIPVITFLRDHHNAQFKSLIDITA 109

Query: 63  VDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGI 122
           VD  +RS RF++VY+ LS +YN R+R+K    E  +V S+V ++  ADW EREVWDMYG+
Sbjct: 110 VDVPTRSQRFELVYNLLSLRYNERIRIKTYTDELSAVDSLVPVFKAADWLEREVWDMYGV 169

Query: 123 FFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFL 182
           FF  HPDLRRILTDYGFEGHPLRKDFP++GFVE+ YDD++K+VV  P+E+ QE R +D  
Sbjct: 170 FFANHPDLRRILTDYGFEGHPLRKDFPLSGFVEVRYDDELKRVVAEPLEMTQEFRKFDLS 229

Query: 183 SPW-------EGVNSLFAKEDSKDDMS 202
           SPW       E       +  ++++ S
Sbjct: 230 SPWESFPNHREPAPEQLEQGKTEEEKS 256


>gi|302895891|ref|XP_003046826.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256727753|gb|EEU41113.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 290

 Score =  221 bits (562), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 78/189 (41%), Positives = 120/189 (63%), Gaps = 1/189 (0%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
              +   G +++      ++       EL++ +    +  + SFL+ +    F  +  + 
Sbjct: 76  ADNMHRYGAWLMGCLPKYIQQFSVWKDELTIYISPSGVYPVFSFLKYNTAAEFTQVSTVT 135

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
             D+ +R NRF++VY+ LS ++N R+RVK    E   VPSI G++ GA+W+EREV+D+YG
Sbjct: 136 AADYPTRENRFEIVYNLLSVRHNSRIRVKTYADEASPVPSITGLFDGANWYEREVYDLYG 195

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD- 180
           +FF GHPDLRRI+TDYGFEGHPLRKDFP+TG+ E+ YD++ K++V  P+EL Q  R+++ 
Sbjct: 196 VFFAGHPDLRRIMTDYGFEGHPLRKDFPLTGYTEIRYDEEKKRIVTEPLELTQAFRNFEG 255

Query: 181 FLSPWEGVN 189
             S WE V 
Sbjct: 256 GSSAWEPVG 264


>gi|156060183|ref|XP_001596014.1| NADH-ubiquinone oxidoreductase 30.4 kDa subunit, mitochondrial
           precursor [Sclerotinia sclerotiorum 1980]
 gi|154699638|gb|EDN99376.1| NADH-ubiquinone oxidoreductase 30.4 kDa subunit, mitochondrial
           precursor [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 292

 Score =  220 bits (561), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 76/189 (40%), Positives = 120/189 (63%), Gaps = 1/189 (0%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
              +   G +++      ++       EL + +    ++ + SFL+ +    F  + D+ 
Sbjct: 78  ADDLHRYGSWLMGCLPKYIQQFSVWKDELVIYISPSGVIPVFSFLKYNTAAEFTQVSDIT 137

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VDF +R  RF++VY+ LS ++N R+R+K    E   VPSI  +Y GA+W+EREV+D++G
Sbjct: 138 AVDFPTRDQRFEIVYNLLSVRHNSRIRIKTYADEASPVPSICSLYDGANWYEREVYDLFG 197

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF GHPDLRRI+TDYGF+GHPLRKDFP+TG+ E+ YD++ K++V  P+EL Q  R+++ 
Sbjct: 198 VFFVGHPDLRRIMTDYGFDGHPLRKDFPLTGYTEIRYDEEKKRIVVEPLELTQAFRNFEG 257

Query: 182 LS-PWEGVN 189
            +  WE V 
Sbjct: 258 GTAAWEQVG 266


>gi|148555891|ref|YP_001263473.1| NADH (or F420H2) dehydrogenase subunit C [Sphingomonas wittichii
           RW1]
 gi|148501081|gb|ABQ69335.1| NADH (or F420H2) dehydrogenase, subunit C [Sphingomonas wittichii
           RW1]
          Length = 217

 Score =  220 bits (561), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 85/186 (45%), Positives = 122/186 (65%), Gaps = 2/186 (1%)

Query: 14  NSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFD 73
            +    +  A + VGE++L V+   LV     LRD     +  ++++ GVD+  R+ RF+
Sbjct: 23  AALGARLIEARSCVGEIALHVERASLVETMRILRD--ELAYQQLMEIAGVDYPDRAERFE 80

Query: 74  VVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRI 133
           VVY  LS   N R+RV +   E + VPS+ G++P A W EREV+DMYG+ FEG+ DLRRI
Sbjct: 81  VVYCLLSVTKNHRIRVHVGTDEVQPVPSVTGLWPVAGWLEREVFDMYGVLFEGNADLRRI 140

Query: 134 LTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEGVNSLFA 193
           LTDYGF GHP RKDFP+TG+VEL Y +  K+VVY PV+L Q+ R ++F+SPWEG + +  
Sbjct: 141 LTDYGFRGHPQRKDFPLTGYVELRYSEAHKRVVYEPVKLAQDFRSFEFMSPWEGADYILP 200

Query: 194 KEDSKD 199
            ++  +
Sbjct: 201 GDEKAE 206


>gi|33943525|gb|AAQ55457.1| putative NADH dehydrogenase subunit 9 precursor [Chlamydomonas
           reinhardtii]
          Length = 282

 Score =  220 bits (561), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 93/187 (49%), Positives = 123/187 (65%), Gaps = 7/187 (3%)

Query: 7   DLGDYIVNSFSGSVR-------FAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIID 59
            L DYI+ +    V+        +     E ++      LV L  FLRD  +  F  ++D
Sbjct: 92  QLTDYIIKTVPKFVKMAVTGPAQSSVLYQEPTIYTTPESLVPLMVFLRDHTNTQFKCLLD 151

Query: 60  LCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDM 119
           +  VDF SR+ RF+VVYH LSP++N R+RVK+ V E  +VP++  ++  A+WFERE WDM
Sbjct: 152 VTAVDFPSRAARFEVVYHLLSPRWNNRIRVKVCVDEVTAVPTLCKVFNTANWFERETWDM 211

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDY 179
           +G+FF GHPDLRRILTDYGF GHPLRKDFP+TG+ E+ YD   K+VV  P+EL QE R +
Sbjct: 212 FGVFFSGHPDLRRILTDYGFTGHPLRKDFPMTGYQEVRYDYGKKRVVSEPLELTQEFRYF 271

Query: 180 DFLSPWE 186
           DF SPWE
Sbjct: 272 DFNSPWE 278


>gi|331225012|ref|XP_003325177.1| NADH-ubiquinone oxidoreductase subunit [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
 gi|309304167|gb|EFP80758.1| NADH-ubiquinone oxidoreductase subunit [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
          Length = 270

 Score =  220 bits (560), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 88/173 (50%), Positives = 116/173 (67%), Gaps = 1/173 (0%)

Query: 19  SVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHF 78
            V  +     EL+L      +V   +FLRD   C +  +ID+ GVD+ +R  RF+VVYH 
Sbjct: 74  YVEVSSVYKDELTLYTAPSGIVGTLTFLRDHKQCQYKQLIDISGVDYPTRPKRFEVVYHL 133

Query: 79  LSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYG 138
           LS +Y  RLRVK    E   VPS+ GI+  ADWFEREV+DM+G+FF  HPDLRRILTDYG
Sbjct: 134 LSIQYASRLRVKTYADEVSPVPSVSGIFRSADWFEREVYDMFGVFFHNHPDLRRILTDYG 193

Query: 139 FEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD-FLSPWEGVNS 190
           FEG+PLRKDFP+TG+ E+ YD++ K+VVY P++L Q  R+++   SPWE    
Sbjct: 194 FEGYPLRKDFPLTGYTEVRYDEEKKRVVYEPLQLSQAFRNFEGANSPWEQTGH 246


>gi|198427805|ref|XP_002131761.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein
           3, (NADH-coenzyme Q reductase) [Ciona intestinalis]
          Length = 275

 Score =  219 bits (559), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 87/195 (44%), Positives = 127/195 (65%), Gaps = 2/195 (1%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNSV-GELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +K+ + G+++       V+    +   EL L VD   +V + SFL+D+    F N+ D+ 
Sbjct: 69  QKLVEYGNFVSECLPKFVQQVQITHTNELELLVDPEYIVQVISFLKDNALSQFTNLSDIT 128

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  +R  RF++VY+ LS  YN+R+RVK    E  +V SIV I+ GA+W+ERE+WDM+G
Sbjct: 129 VVDVPTRPCRFELVYNLLSLAYNQRIRVKSYTDELTAVDSIVEIHEGANWYEREIWDMFG 188

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF+ HPDLRRILTDYGF+GHP RKDFP++G+ E+ YDD+ +++V  P+E+ QE R +D 
Sbjct: 189 VFFKNHPDLRRILTDYGFDGHPFRKDFPLSGYYEVRYDDETERIVREPLEMAQEFRKFDL 248

Query: 182 LSPWEG-VNSLFAKE 195
            SPWE         E
Sbjct: 249 TSPWEAFPKYRKPAE 263


>gi|11467145|ref|NP_054446.1| NADH dehydrogenase subunit 9 [Marchantia polymorpha]
 gi|786229|gb|AAC09443.1| ORF212 [Marchantia polymorpha]
          Length = 212

 Score =  219 bits (559), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 87/197 (44%), Positives = 121/197 (61%), Gaps = 2/197 (1%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  ++      ++ +    +     S  E  L  +   L  L  FL+   +  F  +ID+
Sbjct: 18  MDNQL--FFKSLIATLPKWIHKCQTSKHENILYTNPNSLFQLLYFLKYHTNTRFKVLIDI 75

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
           CGVD+ SR  RF+VVY+ LS  YN R+R+  +V E   + S+V I+P A W+ERE WDM+
Sbjct: 76  CGVDYPSRKRRFEVVYNLLSIDYNTRIRILTSVDEITPICSVVSIFPSAGWWERETWDMF 135

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           G++F  HPDLRRILTDYGFEGHPLRKDFP++G+VE+ YDD  K+VV  P+E+ QE R +D
Sbjct: 136 GVYFSNHPDLRRILTDYGFEGHPLRKDFPLSGYVEVRYDDSEKRVVSEPIEMTQEFRYFD 195

Query: 181 FLSPWEGVNSLFAKEDS 197
           F SPWE ++        
Sbjct: 196 FASPWEQMSRSDESNQK 212


>gi|312376047|gb|EFR23253.1| hypothetical protein AND_13232 [Anopheles darlingi]
          Length = 293

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 84/200 (42%), Positives = 127/200 (63%), Gaps = 1/200 (0%)

Query: 4   KIEDLGDYIVNSFSGSVRFAV-NSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
           ++ D G Y+       V+     S  EL + +    +V +  FL+D  +  F N++D+ G
Sbjct: 88  ELSDFGKYVAECMPKYVQKVQLTSGDELEVLIAPEGVVPVLQFLKDHHNSQFANLVDIAG 147

Query: 63  VDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGI 122
           +D  SR+ RF+++Y+ LS +YN R+RVK    E   + S   ++  A+W+ERE+WDMYG+
Sbjct: 148 MDVPSRAFRFEIIYNILSLRYNSRIRVKTYTDELTPIDSCNEVFKAANWYEREIWDMYGV 207

Query: 123 FFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFL 182
           FF  HPDLRRILTDYGFEGHP R+DFP++G+VEL YDD+ K+VV  P+EL QE R +D  
Sbjct: 208 FFANHPDLRRILTDYGFEGHPQRRDFPLSGYVELRYDDEKKRVVCEPLELAQEFRKFDLS 267

Query: 183 SPWEGVNSLFAKEDSKDDMS 202
           +PWE   +      + ++++
Sbjct: 268 APWEQFPNFRNANPATEEVA 287


>gi|46134189|ref|XP_389410.1| hypothetical protein FG09234.1 [Gibberella zeae PH-1]
          Length = 290

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 79/189 (41%), Positives = 120/189 (63%), Gaps = 1/189 (0%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
              +   G +++      V+       EL++ +    +  + SFL+ +    F  +  + 
Sbjct: 76  SDNMHRYGAWVMGCLPKYVQQFSVWKDELTIYISPSGVYPVFSFLKYNTAAEFTQVSTIT 135

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
             D+ +R NRF++VY+ LS ++N R+RVK    E   VPSI G++ GA+W+EREV+D+YG
Sbjct: 136 AADYPTRENRFEIVYNLLSVRHNSRIRVKTYADEASPVPSITGLFDGANWYEREVYDLYG 195

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD- 180
           +FF GHPDLRRI+TDYGFEGHPLRKDFP+TG+ E+ YD++ K++V  P+EL Q  R+++ 
Sbjct: 196 VFFAGHPDLRRIMTDYGFEGHPLRKDFPLTGYTEIRYDEEKKRIVTEPLELTQAFRNFEG 255

Query: 181 FLSPWEGVN 189
             S WE V 
Sbjct: 256 GSSAWEPVG 264


>gi|297493930|gb|ADI40687.1| NADH dehydrogenase Fe-S protein 3, 30kDa [Miniopterus schreibersii]
          Length = 203

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 85/182 (46%), Positives = 120/182 (65%), Gaps = 1/182 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +++   G+Y+       V+    S   EL + +    ++ + +FLRD  +  F ++ DL 
Sbjct: 22  KQLSAFGEYVAEILPKYVQQVQVSCFNELEICIHPDGIIPVLTFLRDHTNAQFKSLADLT 81

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  +R NRF++VY+ LS ++N R+RVK    E   + S V +Y  A+W+ERE+WDM+G
Sbjct: 82  AVDVPTRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPLESTVSVYKAANWYEREIWDMFG 141

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP RKDFP++G+VEL YDD+VK+VV  PVEL QE R +D 
Sbjct: 142 VFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDL 201

Query: 182 LS 183
            S
Sbjct: 202 NS 203


>gi|146420605|ref|XP_001486257.1| hypothetical protein PGUG_01928 [Meyerozyma guilliermondii ATCC
           6260]
 gi|146389672|gb|EDK37830.1| hypothetical protein PGUG_01928 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 282

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 88/189 (46%), Positives = 122/189 (64%), Gaps = 1/189 (0%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
             ++   G YI+      ++       EL L V    L     FL+      F +++D+ 
Sbjct: 67  NEELHKFGRYIMGCMPKYIQQFSVWKDELVLYVAPSALRPTMLFLKHHTPADFKSVMDVT 126

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
             D+ SR+NRFDVVY+ LS ++N R+RVK   +E  +VPS+V ++ GA+WFERE +D++G
Sbjct: 127 AADYPSRTNRFDVVYNLLSVRHNSRIRVKTYASETTAVPSVVPLFEGANWFERETYDLFG 186

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           IFFEGHPDLRRI+TDYGFEGHPLRKDFP TG+ E+ YD++ K+VVY P+EL Q  R++  
Sbjct: 187 IFFEGHPDLRRIMTDYGFEGHPLRKDFPTTGYTEIRYDEEKKRVVYEPLELTQAFRNFSV 246

Query: 182 LSP-WEGVN 189
            S  WE V 
Sbjct: 247 GSSVWEPVG 255


>gi|2828209|sp|P34944|NDUS3_MARPO RecName: Full=NADH-ubiquinone oxidoreductase 27 kDa subunit;
           AltName: Full=Complex I-27kD; Short=CI-27kD; AltName:
           Full=NADH dehydrogenase subunit 9
          Length = 195

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 87/197 (44%), Positives = 121/197 (61%), Gaps = 2/197 (1%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  ++      ++ +    +     S  E  L  +   L  L  FL+   +  F  +ID+
Sbjct: 1   MDNQL--FFKSLIATLPKWIHKCQTSKHENILYTNPNSLFQLLYFLKYHTNTRFKVLIDI 58

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
           CGVD+ SR  RF+VVY+ LS  YN R+R+  +V E   + S+V I+P A W+ERE WDM+
Sbjct: 59  CGVDYPSRKRRFEVVYNLLSIDYNTRIRILTSVDEITPICSVVSIFPSAGWWERETWDMF 118

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           G++F  HPDLRRILTDYGFEGHPLRKDFP++G+VE+ YDD  K+VV  P+E+ QE R +D
Sbjct: 119 GVYFSNHPDLRRILTDYGFEGHPLRKDFPLSGYVEVRYDDSEKRVVSEPIEMTQEFRYFD 178

Query: 181 FLSPWEGVNSLFAKEDS 197
           F SPWE ++        
Sbjct: 179 FASPWEQMSRSDESNQK 195


>gi|330994056|ref|ZP_08317986.1| NADH-quinone oxidoreductase subunit C [Gluconacetobacter sp.
           SXCC-1]
 gi|329759002|gb|EGG75516.1| NADH-quinone oxidoreductase subunit C [Gluconacetobacter sp.
           SXCC-1]
          Length = 224

 Score =  219 bits (557), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 89/179 (49%), Positives = 122/179 (68%), Gaps = 1/179 (0%)

Query: 20  VRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFL 79
           +  A    GEL +      L++L S LRDDP      ++D+CGVDF  R+ RFDVVY+ L
Sbjct: 36  ILSASIEKGELVVRTTRTRLLALMSLLRDDPRYACQQVMDICGVDFPERAERFDVVYNLL 95

Query: 80  SPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGF 139
           S  +N R+RV +   E  +VPS+  ++P A W+ERE +D++GI F   PDLRRILTDYGF
Sbjct: 96  SVTHNHRIRVIVTTDETSAVPSVHQLWPAATWWEREAYDLFGILFTDQPDLRRILTDYGF 155

Query: 140 EGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEGVNSLFAKEDSK 198
           EGHPLRKDFP+TG+VEL YD++ ++VVY PV L+Q+ R++DF SPWEG+      ++  
Sbjct: 156 EGHPLRKDFPLTGYVELRYDEERRQVVYEPVNLVQDFRNFDFESPWEGI-LTLPGDEKA 213


>gi|148675792|gb|EDL07739.1| mCG50233, isoform CRA_a [Mus musculus]
          Length = 214

 Score =  219 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 88/196 (44%), Positives = 125/196 (63%), Gaps = 1/196 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +++    +Y+       V+    S + +L + +    ++   +FLRD  +  F ++ DL 
Sbjct: 6   KQLSAFAEYVAEILPKYVQQVQVSCLDKLEICIHHDGVIPTLTFLRDHTNAQFKSLADLT 65

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  +R NRF++VY+ LS ++N R+RVK    E   + SIV ++  A+W+EREVWDM+G
Sbjct: 66  AVDVPTRQNRFEIVYNLLSLRFNSRIRVKTYADELTPIDSIVSVHIAANWYEREVWDMFG 125

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF  HPDLRRILTDYGFEGHP RKDFP+ G+VEL YDD+VK+VV  PVEL QE R +D 
Sbjct: 126 VFFFNHPDLRRILTDYGFEGHPFRKDFPLAGYVELRYDDEVKRVVAEPVELAQEFRKFDL 185

Query: 182 LSPWEGVNSLFAKEDS 197
            SPWE   +     +S
Sbjct: 186 NSPWEAFPAYRQPPES 201


>gi|296283831|ref|ZP_06861829.1| NADH (or F420H2) dehydrogenase, subunit C [Citromicrobium
           bathyomarinum JL354]
          Length = 283

 Score =  217 bits (553), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 86/194 (44%), Positives = 120/194 (61%), Gaps = 2/194 (1%)

Query: 5   IEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD 64
           I+ L D +  +    +  A    GEL L V    L      LRDD    +  ++++ GVD
Sbjct: 14  IDGLKDTLSGALGEMLVEAKEEHGELLLSVQRDRLEDALRLLRDDH--GYQQLMEIAGVD 71

Query: 65  FLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFF 124
           +  R  RF+VVY  LS   N R+ VK+  +E   VP+   ++P A W EREV+D+YG+ F
Sbjct: 72  YPGRPERFEVVYMLLSLTKNSRIMVKVTASETTPVPTATTLWPNAGWLEREVFDLYGVVF 131

Query: 125 EGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSP 184
            G+ DLRRILTDYGFEGHP RKDFP+TG+VEL Y ++ ++VVY PVEL Q+ R +DF+SP
Sbjct: 132 AGNMDLRRILTDYGFEGHPFRKDFPLTGYVELRYSEEEQRVVYEPVELAQDLRQFDFMSP 191

Query: 185 WEGVNSLFAKEDSK 198
           WEG + +   ++  
Sbjct: 192 WEGADYVLPGDEKA 205


>gi|115957411|ref|XP_796382.2| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein
           3, 30kDa (NADH-coenzyme Q reductase) [Strongylocentrotus
           purpuratus]
          Length = 256

 Score =  217 bits (553), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 90/207 (43%), Positives = 134/207 (64%), Gaps = 8/207 (3%)

Query: 4   KIEDLGDYIVNSFSGSVRFAVNSVG-ELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
           ++ + G+Y+ +     V+    + G EL + +    ++ + +FLRD  +  F ++ID+  
Sbjct: 48  RLVEFGNYVADCLPKYVQEVQVTYGNELEVMIHPEGIIPVITFLRDHHNAQFKSLIDITA 107

Query: 63  VDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGI 122
           VD  +RS RF++VY+ LS +YN R+R+K    E  +V S+V ++  ADW EREVWDMYG+
Sbjct: 108 VDVPTRSQRFELVYNLLSLRYNERIRIKTYTDELSAVDSLVPVFKAADWLEREVWDMYGV 167

Query: 123 FFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFL 182
           FF  HPDLRRILTDYGFEGHPLRKDFP++GFVE+ YDD++K+VV  P+E+ QE R +D  
Sbjct: 168 FFANHPDLRRILTDYGFEGHPLRKDFPLSGFVEVRYDDELKRVVAEPLEMTQEFRKFDLS 227

Query: 183 SPW-------EGVNSLFAKEDSKDDMS 202
           SPW       E       +  ++++ S
Sbjct: 228 SPWESFPNHREPAPEQLEQGKTEEEKS 254


>gi|38638287|ref|NP_943683.1| NADH dehydrogenase subunit 9 [Chara vulgaris]
 gi|32966601|gb|AAP92184.1| NADH dehydrogenase subunit 9 [Chara vulgaris]
          Length = 188

 Score =  217 bits (553), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 86/185 (46%), Positives = 124/185 (67%), Gaps = 2/185 (1%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  ++      ++ +    +  +  S  E+ +  +  +L  +  FL++  +  F  +ID+
Sbjct: 1   MHNQL--FFKSLIATLPKWINKSKISKKEICIYTNPDNLFQMFFFLKNHTNTRFRVLIDI 58

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
           CGVD+ SR +RF+VVY+ LS +YN RLRV   V E   + S+V I+P A W+EREVWDM+
Sbjct: 59  CGVDYPSRKDRFEVVYNLLSIQYNSRLRVHTRVDEITPICSVVKIFPAAGWWEREVWDMF 118

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           G++F  HPDLRRILTDYGFEGHPLRKDFP++G+VE+ YDD  K+V+  P+E+ QE R +D
Sbjct: 119 GVYFSNHPDLRRILTDYGFEGHPLRKDFPLSGYVEVRYDDSEKRVISEPIEMTQEFRYFD 178

Query: 181 FLSPW 185
           F SPW
Sbjct: 179 FSSPW 183


>gi|321455691|gb|EFX66817.1| hypothetical protein DAPPUDRAFT_115970 [Daphnia pulex]
          Length = 202

 Score =  217 bits (552), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 89/181 (49%), Positives = 117/181 (64%), Gaps = 1/181 (0%)

Query: 7   DLGDYIVNSFSGSVRFAVN-SVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDF 65
           D G Y+       V+     +  EL + +    +V +  FL+D   C F ++ D+  +D 
Sbjct: 2   DFGLYVAECMPKYVQKVQIVTGNELEVLIAPDGIVPVLQFLKDHHQCQFASLADIGAMDV 61

Query: 66  LSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFE 125
            SR NRF+V+Y+ LS ++N R+RVK    E   V S   ++  ADW+EREVWDMYG+FF 
Sbjct: 62  PSRENRFEVIYNLLSLRFNSRIRVKSYTDELTPVDSSYEVFKAADWYEREVWDMYGVFFA 121

Query: 126 GHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPW 185
            HPDLRRILTDYGFEGHP RKDFP+TG+VE+ YDD+ K+VV  PVEL QE R +D  SPW
Sbjct: 122 NHPDLRRILTDYGFEGHPFRKDFPLTGYVEVRYDDEAKRVVVEPVELAQEFRKFDLSSPW 181

Query: 186 E 186
           E
Sbjct: 182 E 182


>gi|261205336|ref|XP_002627405.1| NADH-ubiquinone oxidoreductase 30.4 kDa subunit [Ajellomyces
           dermatitidis SLH14081]
 gi|239592464|gb|EEQ75045.1| NADH-ubiquinone oxidoreductase 30.4 kDa subunit [Ajellomyces
           dermatitidis SLH14081]
 gi|239611381|gb|EEQ88368.1| NADH-ubiquinone oxidoreductase 30.4 kDa subunit [Ajellomyces
           dermatitidis ER-3]
 gi|327348610|gb|EGE77467.1| NADH-ubiquinone oxidoreductase 27 kDa subunit [Ajellomyces
           dermatitidis ATCC 18188]
          Length = 287

 Score =  217 bits (552), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 80/195 (41%), Positives = 119/195 (61%), Gaps = 1/195 (0%)

Query: 5   IEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD 64
           +   G Y+++     ++       EL++ V    ++    FL+      +  ++D+  VD
Sbjct: 76  LHKYGQYLMSCLPKYIQQFSVWKDELTIYVPPSGIIPTFVFLKQHTAAEYTQVVDITAVD 135

Query: 65  FLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFF 124
           F SR  RF+VVY+ LS ++N R+RVK    E   VPSI  +Y GA W+EREV+D++G+FF
Sbjct: 136 FPSRDQRFEVVYNLLSVRHNSRIRVKTYADEATPVPSITCLYDGALWYEREVYDLFGVFF 195

Query: 125 EGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD-FLS 183
             HPDLRRI+TDYGF+GHPLRKDFP+TG+ E+ Y ++ K++V  P+E+ Q  RD+    S
Sbjct: 196 VDHPDLRRIMTDYGFDGHPLRKDFPLTGYTEIRYCEEKKRIVVEPLEMTQAFRDFRAGSS 255

Query: 184 PWEGVNSLFAKEDSK 198
            WE V     K  S+
Sbjct: 256 AWEQVGEGIDKTPSE 270


>gi|313227735|emb|CBY22884.1| unnamed protein product [Oikopleura dioica]
          Length = 289

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 82/199 (41%), Positives = 118/199 (59%), Gaps = 2/199 (1%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVN-SVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
            K+ + G YI       V+        EL + +    +  + SFL+D     F ++ D+ 
Sbjct: 71  EKLANFGAYIAQVLPKYVQLVQVTDQNELEICIHPAGIRPVHSFLKDHSLARFESMSDMT 130

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIV-GIYPGADWFEREVWDMY 120
            VD  +R NRF++VY  LS  +N R+R+K    E   V S+   ++P  +W+ERE WDMY
Sbjct: 131 AVDVPNRQNRFEMVYCLLSTHFNARIRIKSYTNELNPVDSLAADLFPSCNWYERECWDMY 190

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           G++F GHPDLRRILTDYGF+GHP RKDFP+TG+ E+ YDD + +VV  P+EL QE+R +D
Sbjct: 191 GVYFNGHPDLRRILTDYGFQGHPQRKDFPLTGYYEVRYDDDLMRVVQEPLELAQEYRKFD 250

Query: 181 FLSPWEGVNSLFAKEDSKD 199
             +PWE   +     +  D
Sbjct: 251 LKNPWEVFPNFRDASELDD 269


>gi|260818990|ref|XP_002604665.1| hypothetical protein BRAFLDRAFT_167919 [Branchiostoma floridae]
 gi|229289993|gb|EEN60676.1| hypothetical protein BRAFLDRAFT_167919 [Branchiostoma floridae]
          Length = 202

 Score =  216 bits (549), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 80/187 (42%), Positives = 117/187 (62%), Gaps = 1/187 (0%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVN-SVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIID 59
           M  ++   G+Y+       V+     S  EL + +    +V + SFL+D  +  F ++ D
Sbjct: 9   MRNQLTVFGEYVAECLPKYVQTVQVTSQNELEVLISPEGVVPVLSFLKDHHNAQFKSLAD 68

Query: 60  LCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDM 119
           +  VD  ++  RF++VY  +S  YN R+RV+    E   + S   ++  ADW+ERE WDM
Sbjct: 69  IACVDMPTKPYRFELVYMLMSLTYNSRIRVRTYTDEITPIESCYSVFKAADWYEREAWDM 128

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDY 179
           YG++F  HPDLRRILTDYGFEGHP RKDFP++G+VE+ YD+++K++V  PVEL QE R +
Sbjct: 129 YGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSGYVEIRYDNELKRIVQEPVELAQEFRKF 188

Query: 180 DFLSPWE 186
           D  S WE
Sbjct: 189 DLSSTWE 195


>gi|221128571|ref|XP_002163056.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein
           3, (NADH-coenzyme Q reductase) [Hydra magnipapillata]
          Length = 268

 Score =  215 bits (548), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 82/189 (43%), Positives = 121/189 (64%), Gaps = 1/189 (0%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVN-SVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
             ++ + G ++ +S    V+ A      EL + +    ++ + +FLRD  +  F  ++D+
Sbjct: 65  TTRLMEFGQFVSDSMPKFVQSAEVTEGDELQVLISPDGIIPILTFLRDHTNAQFKQLMDI 124

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
             VD+ S+  RF++VY+ LS +YN R+RVK    E   + S   ++  A+W ERE+WDMY
Sbjct: 125 TAVDWPSKPYRFEIVYNLLSVRYNTRIRVKTYTDELTPLDSASSLFHSANWAEREIWDMY 184

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           G+FF  HPDLRRILTDYGFEGHPLRKDFP++GF E+ YD ++K++V  PVEL QE R ++
Sbjct: 185 GVFFSNHPDLRRILTDYGFEGHPLRKDFPLSGFYEIRYDSELKRLVQDPVELAQEFRKFE 244

Query: 181 FLSPWEGVN 189
             SPWE   
Sbjct: 245 LQSPWEQFP 253


>gi|22550347|ref|NP_689378.1| NADH dehydrogenase subunit 9 [Chaetosphaeridium globosum]
 gi|22417013|gb|AAM96612.1|AF494279_17 NADH dehydrogenase subunit 9 [Chaetosphaeridium globosum]
          Length = 187

 Score =  215 bits (548), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 82/185 (44%), Positives = 119/185 (64%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +  + +    ++ +    ++ A  S  E  L +D   +V L  FL+   +  F   +D+ 
Sbjct: 1   MNLMHNFVQNLIATLPLWIKKAQISKNESILYIDSDYIVPLLYFLKHHTNARFQICVDIT 60

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD+ SR  RF++VY+ LS +YN R+R+  +V E   V S+  I+  A WFEREVWDM+G
Sbjct: 61  AVDYPSRKQRFEIVYNLLSVQYNSRIRIHTSVDEITPVNSVTAIFASAGWFEREVWDMFG 120

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           ++F  HPDLRRILTDYGFEGHPLRKDFP++G+VE+ YDD  K+V+  P+E+ QE R +DF
Sbjct: 121 VYFSNHPDLRRILTDYGFEGHPLRKDFPLSGYVEVRYDDSEKRVISEPIEMAQEFRYFDF 180

Query: 182 LSPWE 186
            S W+
Sbjct: 181 ASTWK 185


>gi|256088184|ref|XP_002580233.1| NADH-ubiquinone oxidoreductase [Schistosoma mansoni]
 gi|238665758|emb|CAZ36472.1| NADH-ubiquinone oxidoreductase mitochondrial precursor, putative
           [Schistosoma mansoni]
          Length = 270

 Score =  215 bits (548), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 80/201 (39%), Positives = 118/201 (58%), Gaps = 1/201 (0%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSV-GELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           + ++   G Y+       V+        EL + +    ++ + SFL+   +  F+N+ D+
Sbjct: 50  IERLSSFGVYVGECLPKFVQKVQIGHTKELEICIHPDGIIPVLSFLKCHHNAQFLNLSDI 109

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
             VD  SR  RF +VY+ LS +YN R+RV     E   + S   I+  ++W+EREVWDMY
Sbjct: 110 TAVDIPSRKYRFQIVYNLLSLRYNSRIRVLTYTDELTPIDSSCSIFQASNWYEREVWDMY 169

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           G+FF  HPDLRRILTDYGF GHP R+DFP++G+ E+ YDD+  +VV  PVEL QE R ++
Sbjct: 170 GVFFHDHPDLRRILTDYGFIGHPQRRDFPLSGYTEMRYDDQYYRVVIEPVELAQEFRRFE 229

Query: 181 FLSPWEGVNSLFAKEDSKDDM 201
           F SPWE   +        +++
Sbjct: 230 FNSPWEAFPAFRDSSSQDENL 250


>gi|110225659|ref|YP_665665.1| NADH dehydrogenase subunit 9 [Nephroselmis olivacea]
 gi|6066174|gb|AAF03192.1|AF110138_24 NADH dehydrogenase subunit 9 [Nephroselmis olivacea]
          Length = 189

 Score =  215 bits (547), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 95/181 (52%), Positives = 122/181 (67%)

Query: 6   EDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDF 65
           E     I++     V+ +V    EL L V    LV L  FLR+  +  F  ++D CGVD+
Sbjct: 3   EQFEQSIISILPKWVKSSVRVENELILSVSPEHLVPLLFFLRNHTNTQFELLVDACGVDY 62

Query: 66  LSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFE 125
            SR  RF++VY  LS +YN RLR+K+AV E   +PS   +YP A W ERE WDMYGIFF 
Sbjct: 63  PSRPLRFEMVYQLLSVQYNSRLRIKVAVDEFTPIPSATEVYPSAGWLEREAWDMYGIFFS 122

Query: 126 GHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPW 185
            HPDLRRILTDYGFEGHPLRKDFP+TG+ E+ YDD  K+VV  P+++ QE+R ++FLSPW
Sbjct: 123 NHPDLRRILTDYGFEGHPLRKDFPLTGYTEVRYDDSEKRVVIEPIQMTQEYRYFNFLSPW 182

Query: 186 E 186
           +
Sbjct: 183 D 183


>gi|262186746|ref|YP_003276005.1| NADH dehydrogenase subunit 9 [Pleurozia purpurea]
 gi|237780743|gb|ACR19389.1| NADH dehydrogenase subunit 9 [Pleurozia purpurea]
          Length = 212

 Score =  215 bits (547), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 86/197 (43%), Positives = 118/197 (59%), Gaps = 2/197 (1%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  ++      ++ +    +     S  E  L  +   L  L  F +   +  F  +ID+
Sbjct: 18  MHNQL--FLKSLIATLPKWIHKCQTSKHENILYTNPNSLFQLLYFPKYHTNTRFKVLIDI 75

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
            GVD  SR  RF+VVY+ LS  YN R+R+   V E   + S+VGI+P A W+ERE WDM+
Sbjct: 76  RGVDHPSRKRRFEVVYNLLSIDYNTRIRILTGVDEITPICSVVGIFPSAGWWERETWDMF 135

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           G++F  HPDLRRILTDYGFEGHPLRKDFP++G+VE+ YDD  K+VV  P+E+ QE R +D
Sbjct: 136 GVYFSNHPDLRRILTDYGFEGHPLRKDFPLSGYVEVRYDDSEKRVVSEPIEMTQEFRYFD 195

Query: 181 FLSPWEGVNSLFAKEDS 197
           F SPWE ++        
Sbjct: 196 FASPWEQMSRSDGSNQK 212


>gi|114327964|ref|YP_745121.1| NADH-quinone oxidoreductase chain C [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316138|gb|ABI62198.1| NADH-quinone oxidoreductase chain C [Granulibacter bethesdensis
           CGDNIH1]
          Length = 205

 Score =  214 bits (546), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 90/179 (50%), Positives = 122/179 (68%), Gaps = 1/179 (0%)

Query: 20  VRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFL 79
           V  A     E+ ++V    L ++   LRDDP      ++D+CGVD+ SRS RFDVVY+ L
Sbjct: 11  VTRAQLEKNEVVVEVTRDQLEAVALTLRDDPRFLCQQLMDVCGVDWPSRSPRFDVVYNLL 70

Query: 80  SPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGF 139
           S   N R+R+ +   +G  VPS+  I+P A WFERE WD++GI F G PD RRILTDYGF
Sbjct: 71  SISLNHRIRMIVGTDDGVPVPSVHTIWPVATWFERETWDLFGILFSGQPDHRRILTDYGF 130

Query: 140 EGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEGVNSLFAKEDSK 198
           EGHPLRKDFP+TG+VEL +D++ ++VVY PV+L Q+ R++DFLSPWEG+      ++  
Sbjct: 131 EGHPLRKDFPLTGYVELRWDEERRQVVYEPVKLTQDFRNFDFLSPWEGMT-TLPGDEKA 188


>gi|308474977|ref|XP_003099708.1| CRE-NUO-2 protein [Caenorhabditis remanei]
 gi|308266363|gb|EFP10316.1| CRE-NUO-2 protein [Caenorhabditis remanei]
          Length = 284

 Score =  214 bits (546), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 79/203 (38%), Positives = 117/203 (57%), Gaps = 16/203 (7%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNSVG-ELSLDVDCGDLVSLCSFLRD------------- 48
            ++ + G Y        V+    + G EL L +    +V + SFL+              
Sbjct: 53  ERLANFGKYAAECLPKFVQKVQFAAGDELELLIHPSGVVPVLSFLKVSFIDIILTEPINF 112

Query: 49  --DPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIY 106
             +    F N+  + G+D  +R NR +V+Y   S ++N R+RV+    E   + S+  ++
Sbjct: 113 QGNHSAQFTNLTFITGMDVPTRKNRLEVIYALYSVRFNARVRVRTYTDEIAPIDSVTPVF 172

Query: 107 PGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVV 166
            GADW+EREV+DMYG++F  HPDLRRILTDYGFEGHP RKD+P++G+ E+ YD ++K+VV
Sbjct: 173 KGADWYEREVYDMYGVWFNNHPDLRRILTDYGFEGHPFRKDYPLSGYNEVRYDPELKRVV 232

Query: 167 YRPVELMQEHRDYDFLSPWEGVN 189
           Y P EL QE R +D  +PWE   
Sbjct: 233 YEPSELAQEFRKFDLNTPWEQFP 255


>gi|85374164|ref|YP_458226.1| NADH dehydrogenase I, C subunit [Erythrobacter litoralis HTCC2594]
 gi|122544411|sp|Q2NA62|NUOC_ERYLH RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|84787247|gb|ABC63429.1| NADH dehydrogenase I, C subunit [Erythrobacter litoralis HTCC2594]
          Length = 250

 Score =  214 bits (546), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 82/188 (43%), Positives = 120/188 (63%), Gaps = 2/188 (1%)

Query: 12  IVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNR 71
           +V +    V  +    GE+ + V+   +  +   LRDD    +  ++++ GVD+  R  R
Sbjct: 20  LVKALGDYVAASHEKYGEIIITVERDAIEDVLRTLRDDHD--YQQLMEIAGVDYPERPER 77

Query: 72  FDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLR 131
           F+VVY  LS   N R+ VK++  E   VP++  ++P A W EREV+D+YG+ F+G+ DLR
Sbjct: 78  FEVVYMLLSLTKNHRVMVKVSTDEKTPVPTVTTLWPNAGWLEREVFDLYGVLFDGNTDLR 137

Query: 132 RILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEGVNSL 191
           RILTDYGFEGHP RKDFP+TG+ EL Y ++ ++VVY PVEL Q+ R +DFLSPWEG+   
Sbjct: 138 RILTDYGFEGHPFRKDFPLTGYTELRYSEEEQRVVYEPVELAQDLRTFDFLSPWEGMTPP 197

Query: 192 FAKEDSKD 199
              ++  D
Sbjct: 198 LPGDEKAD 205


>gi|296116533|ref|ZP_06835143.1| NADH (or F420H2) dehydrogenase, subunit C [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295976745|gb|EFG83513.1| NADH (or F420H2) dehydrogenase, subunit C [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 221

 Score =  213 bits (542), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 83/179 (46%), Positives = 120/179 (67%), Gaps = 1/179 (0%)

Query: 20  VRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFL 79
           +  A    GEL +      L+++ + LRDDP      ++DLCGVD+  R+ RFDVVY+ L
Sbjct: 33  IISAGIEGGELVVRTTRPYLLAIMTMLRDDPRYACEQMMDLCGVDYPDRAERFDVVYNLL 92

Query: 80  SPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGF 139
           S  +N R+RV +   E + V S+  ++P A W+ERE +D++G+ F   PDLRRILTDYGF
Sbjct: 93  SVTHNHRIRVIVTTDETQPVASVHRLWPSATWWERECYDLFGVLFADQPDLRRILTDYGF 152

Query: 140 EGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEGVNSLFAKEDSK 198
           EG+PLRKDFP+TG+VE  YD++ ++VVY PV+L Q+ R++DF SPWEG+      ++  
Sbjct: 153 EGYPLRKDFPLTGYVETRYDEERRQVVYEPVQLKQDFRNFDFESPWEGI-LTLPGDEKA 210


>gi|310816714|ref|YP_003964678.1| NADH dehydrogenase subunit C [Ketogulonicigenium vulgare Y25]
 gi|308755449|gb|ADO43378.1| NADH dehydrogenase subunit C [Ketogulonicigenium vulgare Y25]
          Length = 198

 Score =  212 bits (541), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 101/193 (52%), Positives = 136/193 (70%), Gaps = 1/193 (0%)

Query: 5   IEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD 64
           ++DL  Y+ +   G+   A  + GEL+L     DL +L  FLRDD  C F  ++D+  VD
Sbjct: 1   MQDLATYLRDMAPGAPT-AQLAYGELTLTSTLTDLPALLMFLRDDVQCRFSTLVDITAVD 59

Query: 65  FLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFF 124
           + +R  RFD+VYHFLS   N RLR+K+AVA+G+  PS +  YP ADWFEREV+DM+GI F
Sbjct: 60  YPARIKRFDLVYHFLSMHLNHRLRLKVAVADGEMPPSAIPAYPAADWFEREVFDMFGILF 119

Query: 125 EGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSP 184
            GHPDLRR+LTDYGF GHPLRKDFP TG+ E+ YD+  K+VV+ PV+L+Q +R +DFLSP
Sbjct: 120 TGHPDLRRLLTDYGFSGHPLRKDFPTTGYTEVLYDEVEKRVVHAPVQLVQAYRQFDFLSP 179

Query: 185 WEGVNSLFAKEDS 197
           WEG+ +    + +
Sbjct: 180 WEGMGNTLPGDQT 192


>gi|91208867|ref|YP_539028.1| NADH dehydrogenase subunit 9 [Physcomitrella patens]
 gi|90991407|dbj|BAE93099.1| NADH dehydrogenase subunit 9 [Physcomitrella patens]
          Length = 195

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 88/182 (48%), Positives = 119/182 (65%)

Query: 6   EDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDF 65
           +     ++ +    +     S  E  L  +   L  L  FL+   +  F  +ID+CGVD+
Sbjct: 4   QSFFKSLIATLPKWIHQFQKSKHENILYTNPDYLFQLLWFLKYHTNTRFQVLIDICGVDY 63

Query: 66  LSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFE 125
            SR  RF+VVY+ LS +YN R+RV+ +V E   + S V I+P A W+EREVWDM+G++F 
Sbjct: 64  PSRKQRFEVVYNLLSIQYNSRIRVQTSVDEITPICSAVSIFPSAGWWEREVWDMFGVYFS 123

Query: 126 GHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPW 185
            HPDLRRILTDYGFEGHPLRKDFP++G+VE+ YDD  K+VV  P+E+ QE R +DF SPW
Sbjct: 124 NHPDLRRILTDYGFEGHPLRKDFPLSGYVEVRYDDSEKRVVSEPIEMTQEFRYFDFASPW 183

Query: 186 EG 187
           E 
Sbjct: 184 EQ 185


>gi|85708752|ref|ZP_01039818.1| NADH dehydrogenase subunit C [Erythrobacter sp. NAP1]
 gi|85690286|gb|EAQ30289.1| NADH dehydrogenase subunit C [Erythrobacter sp. NAP1]
          Length = 259

 Score =  212 bits (540), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 86/190 (45%), Positives = 117/190 (61%), Gaps = 2/190 (1%)

Query: 10  DYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRS 69
           D +  S S  +  A    GE+ L      +  +   LRDD    +  ++++ G D+  R 
Sbjct: 18  DALSESVSVWLDRAEEQHGEIILTAKRESIAEVLRILRDDH--AYQQMMEIAGADYPDRD 75

Query: 70  NRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPD 129
            RF+VVY  LS   N R+ VK +  E   VPS+  ++P A W EREV+D+YG+ FEG+ D
Sbjct: 76  ERFEVVYMLLSLTKNHRIMVKCSTDETTPVPSVTSLWPNAGWLEREVFDLYGVVFEGNSD 135

Query: 130 LRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEGVN 189
           LRRILTDYGFEGHP RKDFP+TG+ EL Y +  K+VVY PVEL Q+ R +DFLSPWEG +
Sbjct: 136 LRRILTDYGFEGHPFRKDFPMTGYTELRYSEDEKRVVYEPVELPQDMRTFDFLSPWEGSD 195

Query: 190 SLFAKEDSKD 199
            +   ++  D
Sbjct: 196 YVLPGDEKAD 205


>gi|258542720|ref|YP_003188153.1| NADH-quinone oxidoreductase chain C [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633798|dbj|BAH99773.1| NADH-quinone oxidoreductase chain C [Acetobacter pasteurianus IFO
           3283-01]
 gi|256636857|dbj|BAI02826.1| NADH-quinone oxidoreductase chain C [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639910|dbj|BAI05872.1| NADH-quinone oxidoreductase chain C [Acetobacter pasteurianus IFO
           3283-07]
 gi|256642966|dbj|BAI08921.1| NADH-quinone oxidoreductase chain C [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646021|dbj|BAI11969.1| NADH-quinone oxidoreductase chain C [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649074|dbj|BAI15015.1| NADH-quinone oxidoreductase chain C [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652061|dbj|BAI17995.1| NADH-quinone oxidoreductase chain C [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655118|dbj|BAI21045.1| NADH-quinone oxidoreductase chain C [Acetobacter pasteurianus IFO
           3283-12]
          Length = 219

 Score =  212 bits (539), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 83/183 (45%), Positives = 120/183 (65%), Gaps = 1/183 (0%)

Query: 19  SVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHF 78
           +V +A    GEL + ++   L+     LRD P   F  ++DLCGVDF  R  RF+VVY+ 
Sbjct: 30  AVSYAAVEKGELVVRIERDHLLHFFELLRDHPSYRFEQLMDLCGVDFPERPQRFEVVYNL 89

Query: 79  LSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYG 138
           LS  +N R+RV +   E   VPS+  ++P A W+ERE +D++G+ F G PD+RRILTD G
Sbjct: 90  LSVTHNHRIRVIVQTDEVTPVPSVHHLWPCATWWERECYDLFGVVFSGQPDMRRILTDNG 149

Query: 139 FEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEGVNSLFAKEDSK 198
           FEGHPLRKDFP+TG+ ++ YD + ++VV  PV L Q+ RD+DF+SPWEG+      ++  
Sbjct: 150 FEGHPLRKDFPLTGYEQVRYDVERRQVVKEPVSLTQDFRDFDFVSPWEGM-LTLPGDEKA 208

Query: 199 DDM 201
            ++
Sbjct: 209 HEV 211


>gi|34765759|gb|AAQ82457.1| NADH-ubiquinone oxidoreductase 30.4 kDa subunit [Armillariella
           tabescens]
          Length = 270

 Score =  212 bits (539), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 82/200 (41%), Positives = 114/200 (57%), Gaps = 4/200 (2%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
              +   G Y+       ++       EL+L      ++ + +FLRD   C F +++D+ 
Sbjct: 59  AEALHTYGSYLTQCLPKFIQQFSVLKDELTLYTAPSGIIPVLTFLRDHAQCQFKSVVDIS 118

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
           G D+  R  RF+VVYH LS K   R+RVK    EG  VPS V  + GADW+ERE WD++G
Sbjct: 119 GADYPDREKRFEVVYHLLSVKQAGRIRVKTYAGEGDHVPSAVKSFRGADWYEREAWDLFG 178

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           I F  HPDLRRILTDYGFEG    K  P+TG+ EL  D++ K+VVY P++L Q  R+++ 
Sbjct: 179 ISFSDHPDLRRILTDYGFEGTLYAKTSPLTGYTELRCDEERKRVVYEPLQLTQAFRNFES 238

Query: 182 LSPWE----GVNSLFAKEDS 197
           LSPWE    G  +   +   
Sbjct: 239 LSPWEQVGDGTKAPRPENLK 258


>gi|29841214|gb|AAP06227.1| SJCHGC06115 protein [Schistosoma japonicum]
 gi|226478696|emb|CAX72843.1| putative NADH dehydrogenase (ubiquinone) Fe-S protein 3
           [Schistosoma japonicum]
 gi|257205792|emb|CAX82547.1| putative NADH dehydrogenase (ubiquinone) Fe-S protein 3
           [Schistosoma japonicum]
 gi|257206566|emb|CAX82911.1| putative NADH dehydrogenase (ubiquinone) Fe-S protein 3
           [Schistosoma japonicum]
          Length = 259

 Score =  212 bits (539), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 79/186 (42%), Positives = 114/186 (61%), Gaps = 1/186 (0%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSV-GELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           + ++   G Y+       V+        EL + +    ++ + SFL+   +  F+N+ D+
Sbjct: 40  IDRLSVFGTYVGECLPKFVQKVQMGHTKELEICIHPDGIIPVLSFLKYHHNAQFLNLSDI 99

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
             VD  SR  RF +VY+ LS +YN R+RV     E   V S   ++  ++W+EREVWDMY
Sbjct: 100 TAVDIPSRKYRFQIVYNLLSLRYNSRIRVLTYTDELTPVDSSCSVFQASNWYEREVWDMY 159

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           G+FF  HPDLRRILTDYGF GHP RKDFP++G+ E+ +D++  +VV  PVEL QE R ++
Sbjct: 160 GVFFYDHPDLRRILTDYGFVGHPQRKDFPLSGYTEMRFDEEYCRVVIEPVELAQEFRRFE 219

Query: 181 FLSPWE 186
           F SPWE
Sbjct: 220 FNSPWE 225


>gi|329114680|ref|ZP_08243439.1| NADH-quinone oxidoreductase subunit C [Acetobacter pomorum DM001]
 gi|326696160|gb|EGE47842.1| NADH-quinone oxidoreductase subunit C [Acetobacter pomorum DM001]
          Length = 219

 Score =  212 bits (539), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 83/182 (45%), Positives = 118/182 (64%), Gaps = 1/182 (0%)

Query: 20  VRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFL 79
           V +A    GEL + ++   L+     LRD P   F  ++DLCGVDF  R  RFDVVY+ L
Sbjct: 31  VSYAAVEKGELVVRIERDHLLHFLELLRDHPSYRFEQLMDLCGVDFPERPQRFDVVYNLL 90

Query: 80  SPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGF 139
           S  +N R+RV +   E   VPS+  ++P A W+ERE +D++G+ F   PD+RRILTD GF
Sbjct: 91  SVTHNHRIRVIVQTDEIMPVPSVHHLWPCATWWERECYDLFGVVFSNQPDMRRILTDNGF 150

Query: 140 EGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEGVNSLFAKEDSKD 199
           EGHPLRKDFP+TG+ ++ YD + ++VV  PV L Q+ RD+DF+SPWEG+      ++   
Sbjct: 151 EGHPLRKDFPLTGYEQVRYDVERRQVVKEPVSLTQDFRDFDFVSPWEGM-LTLPGDEKAH 209

Query: 200 DM 201
           ++
Sbjct: 210 EV 211


>gi|195998265|ref|XP_002109001.1| hypothetical protein TRIADDRAFT_52564 [Trichoplax adhaerens]
 gi|190589777|gb|EDV29799.1| hypothetical protein TRIADDRAFT_52564 [Trichoplax adhaerens]
          Length = 269

 Score =  211 bits (538), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 85/194 (43%), Positives = 125/194 (64%), Gaps = 1/194 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNSVG-ELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
            ++ D G Y+++     ++    ++G EL L V    L+    FLR+  +  F +++D+ 
Sbjct: 59  TRLTDYGRYLLDIIPKYLQGINLALGDELELLVYPEALIPTMIFLRNHTNAQFESLVDIT 118

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            +D   R  RF+++Y+ LS +YN R+RVK    E   + SI  I+PGA+WFEREVWDMYG
Sbjct: 119 AIDVPKREYRFELIYNLLSLRYNSRVRVKTYTDELTPIESITPIFPGANWFEREVWDMYG 178

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           ++F  HPDLRRILTDYGF+GHP RKDFP++G+ EL YDD++K++V  PVE  QE R +D 
Sbjct: 179 VYFANHPDLRRILTDYGFDGHPQRKDFPLSGYTELRYDDELKRIVSEPVEFAQEFRKFDL 238

Query: 182 LSPWEGVNSLFAKE 195
            +PWE   +   + 
Sbjct: 239 ETPWEQFPAYREEN 252


>gi|296419098|ref|XP_002839156.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295635162|emb|CAZ83347.1| unnamed protein product [Tuber melanosporum]
          Length = 277

 Score =  211 bits (538), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 80/199 (40%), Positives = 122/199 (61%), Gaps = 15/199 (7%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
              +   G Y++++    ++       EL++ +    ++             +  + D+ 
Sbjct: 76  SESLHAYGRYLISALPKYIQQFSIWKDELTIYIAPSAILP------------YTQVSDIT 123

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD+ +R NRF+VVY+ LS ++N R+RVK    E   VPSI G+Y GA+W+EREV+D++G
Sbjct: 124 AVDYPTRINRFEVVYNLLSIRHNSRIRVKTYADEASPVPSITGLYDGANWYEREVYDLFG 183

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           + F GHPDLRRI+TDYGF+GHPLRKDFP+TG+ EL YD++ K++V  P+E+ Q  R++  
Sbjct: 184 VLFVGHPDLRRIMTDYGFDGHPLRKDFPLTGYTELRYDEEKKRIVVEPLEMTQAFRNFQG 243

Query: 182 LSP-WEGVNSLFAKEDSKD 199
            S  WE V S   K+D  D
Sbjct: 244 GSSVWEQVGS--GKDDKPD 260


>gi|148259934|ref|YP_001234061.1| NADH (or F420H2) dehydrogenase, subunit C [Acidiphilium cryptum
           JF-5]
 gi|326403112|ref|YP_004283193.1| NADH-quinone oxidoreductase subunit C [Acidiphilium multivorum
           AIU301]
 gi|146401615|gb|ABQ30142.1| NADH dehydrogenase subunit C [Acidiphilium cryptum JF-5]
 gi|325049973|dbj|BAJ80311.1| NADH-quinone oxidoreductase subunit C [Acidiphilium multivorum
           AIU301]
          Length = 213

 Score =  210 bits (534), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 89/191 (46%), Positives = 118/191 (61%), Gaps = 3/191 (1%)

Query: 8   LGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLS 67
            GD +       V   V    E  + VD   L ++   LRD+P   F   +D+CGVD+  
Sbjct: 19  FGDLLRAI--DGVTDVVLERDERIIAVDRAALAAVMRTLRDNPQFAFEQCMDVCGVDWPE 76

Query: 68  RSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGH 127
           R+ RFDVVY+ LS   N RLRV +   E   VPS+  I+PG  W+EREV+D++G+ F+G 
Sbjct: 77  RAERFDVVYNLLSVTRNDRLRVIVTTDETAPVPSVSDIWPGVTWWEREVFDLFGVSFDGL 136

Query: 128 PDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEG 187
            D RRILTD GFEGHP+RKDFP+TG VEL YD++ K+VVY  V L QE R++DFLSPWE 
Sbjct: 137 VDHRRILTDNGFEGHPMRKDFPLTGHVELRYDEEQKRVVYDKVALTQEFRNFDFLSPWEA 196

Query: 188 VNSLFAKEDSK 198
           +      ++  
Sbjct: 197 MT-TLPGDEKA 206


>gi|197105266|ref|YP_002130643.1| NADH dehydrogenase I, C subunit [Phenylobacterium zucineum HLK1]
 gi|218534305|sp|B4RCM7|NUOC_PHEZH RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|196478686|gb|ACG78214.1| NADH dehydrogenase I, C subunit [Phenylobacterium zucineum HLK1]
          Length = 209

 Score =  210 bits (534), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 103/203 (50%), Positives = 136/203 (66%), Gaps = 7/203 (3%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
            ++E LG  +V    G       + GELSL      +V   + LRDD    F  ++D+CG
Sbjct: 8   DELEALGRELVAGGLGPFGGYEVAFGELSLTGPAHRIVEGLTLLRDDH--GFQQLVDICG 65

Query: 63  VDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGI 122
           VD+  R  RFDVVYH LS   NRR+RVK+   E  +VPS+ G+YP ADW+ERE +DMYG+
Sbjct: 66  VDYPERERRFDVVYHLLSFTKNRRIRVKVQADEDTAVPSVTGVYPNADWYEREAFDMYGV 125

Query: 123 FFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFL 182
           FF+GHPDLRRILTDYGF GHPLRKDFP+TG+VE+ YDD++K+VVY PV+   E R++DFL
Sbjct: 126 FFDGHPDLRRILTDYGFHGHPLRKDFPMTGYVEVRYDDELKRVVYEPVK-SVEWRNWDFL 184

Query: 183 SPWEGVNS----LFAKEDSKDDM 201
           SPWEGV      +   ++  ++ 
Sbjct: 185 SPWEGVERGFAPILPGDEKGEEA 207


>gi|6624942|emb|CAB63881.1| hypothetical protein [Homo sapiens]
          Length = 190

 Score =  209 bits (532), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 85/174 (48%), Positives = 118/174 (67%)

Query: 24  VNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKY 83
           V+   EL + +    ++ + +FLRD  +  F +++DL  VD  +R NRF++VY+ LS ++
Sbjct: 4   VSCFNELEVCIHPDGVIPVLTFLRDHTNAQFKSLVDLTAVDVPTRQNRFEIVYNLLSLRF 63

Query: 84  NRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHP 143
           N R+RVK    E   + S V ++  A+W+ERE+WDM+G+FF  HPDLRRILTDYGFEGHP
Sbjct: 64  NSRIRVKTYTDELTPIESAVSVFKAANWYEREIWDMFGVFFANHPDLRRILTDYGFEGHP 123

Query: 144 LRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEGVNSLFAKEDS 197
            RKDFP++G+VEL YDD+VK+VV  PVEL QE R +D  SPWE         +S
Sbjct: 124 FRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPVYRQPPES 177


>gi|229315931|ref|YP_002860157.1| NADH dehydrogenase subunit 9 [Micromonas sp. RCC299]
 gi|226431216|gb|ACO55621.1| NADH dehydrogenase subunit 9 [Micromonas sp. RCC299]
          Length = 188

 Score =  209 bits (532), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 87/181 (48%), Positives = 114/181 (62%)

Query: 6   EDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDF 65
           +     + +     +        E+   V    L+   +FL++  +  F  +ID+  VD+
Sbjct: 3   QSFVHVLTSMVPKWLEEIQVIRDEIICIVPSWALLPFLTFLKNHTNTQFKMLIDITAVDY 62

Query: 66  LSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFE 125
            SRS+RF+VVY  LS  YN R+RVK  V E   + S+  ++P A+WFERE WDM+GI F 
Sbjct: 63  PSRSSRFEVVYQLLSIHYNARIRVKTNVDELTPIESVSSLFPSANWFERETWDMFGICFL 122

Query: 126 GHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPW 185
            HPDLRRILTDYGFEGHPLRKDFPV+G+VE  YDD  K+V+  PVEL QE R +DF SPW
Sbjct: 123 NHPDLRRILTDYGFEGHPLRKDFPVSGYVEFRYDDSKKRVISEPVELAQEFRYFDFASPW 182

Query: 186 E 186
           E
Sbjct: 183 E 183


>gi|113170491|ref|YP_717282.1| nad9 [Ostreococcus tauri]
 gi|112806898|emb|CAL36404.1| unnamed protein product [Ostreococcus tauri]
          Length = 186

 Score =  208 bits (529), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 88/172 (51%), Positives = 114/172 (66%), Gaps = 1/172 (0%)

Query: 16  FSGSVRFAVNSVGELSLDVD-CGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDV 74
           F   V+  +    E++L +    DL  +   L++     F  +ID+  VD+ SR  RF+V
Sbjct: 9   FPKWVQKVIAQSNEVTLVLKSPQDLHPVLEILKNHSATQFKMLIDITAVDYPSREARFEV 68

Query: 75  VYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRIL 134
           VYH LS + N RLR+K+  +E   V S+  +YP A+WFERE WDM+GI F  HPDLRRIL
Sbjct: 69  VYHLLSVQRNTRLRLKVQCSEHAIVESVTSLYPAANWFERETWDMFGICFTNHPDLRRIL 128

Query: 135 TDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWE 186
           TDYGFEGHPLRKDFP+TG+VE  YDD  K+VV  PVEL Q+ R ++F SPWE
Sbjct: 129 TDYGFEGHPLRKDFPLTGYVEFKYDDTKKRVVAEPVELAQQFRQFEFRSPWE 180


>gi|302657857|ref|XP_003020640.1| hypothetical protein TRV_05262 [Trichophyton verrucosum HKI 0517]
 gi|291184495|gb|EFE40022.1| hypothetical protein TRV_05262 [Trichophyton verrucosum HKI 0517]
          Length = 207

 Score =  208 bits (529), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 83/181 (45%), Positives = 119/181 (65%), Gaps = 3/181 (1%)

Query: 23  AVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPK 82
                 EL++ V    +V + +FLRD     +  + D+  VDF +R  RF+VVY+ LS +
Sbjct: 1   FSVWKDELTIYVPPAGVVPVMTFLRDHTAAEYTQVSDITAVDFPTREYRFEVVYNLLSVR 60

Query: 83  YNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGH 142
           +N R+RVK    E   VPSI  +Y GA WFEREV+DM+G+FF GHPDLRRI+TDYGF+GH
Sbjct: 61  HNSRIRVKTYADEATPVPSITSLYDGALWFEREVYDMFGVFFTGHPDLRRIMTDYGFDGH 120

Query: 143 PLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD-FLSPWEGVNSLFAKEDSKDDM 201
           PLRKDFP++G+ E+ YD++ K++V  P+EL Q  R+++   S WEG+      +   D++
Sbjct: 121 PLRKDFPLSGYTEIRYDEEKKRIVVEPLELTQAFRNFEGGSSAWEGIGQGI--DRKPDNV 178

Query: 202 S 202
           S
Sbjct: 179 S 179


>gi|170574739|ref|XP_001892941.1| NADH-ubiquinone oxidoreductase 30 kDa subunit, mitochondrial
           precursor [Brugia malayi]
 gi|158601253|gb|EDP38212.1| NADH-ubiquinone oxidoreductase 30 kDa subunit, mitochondrial
           precursor, putative [Brugia malayi]
          Length = 267

 Score =  208 bits (529), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 84/193 (43%), Positives = 120/193 (62%), Gaps = 1/193 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNSVG-ELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
            K+   G Y        V+    + G EL L +    +  + +FL+ +    F NI+ + 
Sbjct: 52  EKLAKFGRYCAECLPKFVQKVQFAAGDELELLIHPSGVTPVIAFLKGNHAAQFTNIVFIT 111

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
           G+D  SR  RF+V+Y FLS ++N R+RV+    E   + SI  I+ GA+W+EREV+DMYG
Sbjct: 112 GMDVPSRKFRFEVIYAFLSIRFNARIRVRTYTDEIAPLESITPIFKGANWYEREVYDMYG 171

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           ++F  HPDLRRILTDYGFEGHP RKDFP++G+VEL YD ++ + VY P EL QE R +D 
Sbjct: 172 VWFNNHPDLRRILTDYGFEGHPFRKDFPLSGYVELRYDSELBRCVYEPTELAQEFRKFDL 231

Query: 182 LSPWEGVNSLFAK 194
            +PWE + +   +
Sbjct: 232 KTPWELMPNFRNE 244


>gi|154315521|ref|XP_001557083.1| hypothetical protein BC1G_04333 [Botryotinia fuckeliana B05.10]
 gi|150847273|gb|EDN22466.1| hypothetical protein BC1G_04333 [Botryotinia fuckeliana B05.10]
          Length = 274

 Score =  207 bits (527), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 73/197 (37%), Positives = 118/197 (59%), Gaps = 1/197 (0%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
              +   G +++      ++       EL + +    ++ + SFL+ +    F  I D+ 
Sbjct: 78  ADDMHRYGSWLMGCLPKYIQQFSVWKDELVIYISPSGVIPVFSFLKYNTSAEFTQISDIT 137

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VDF +R  RF++VY+ LS ++N R+R+K    E   VPS+  +Y GA+W+EREV+D++G
Sbjct: 138 AVDFPTRDQRFEIVYNLLSVRHNSRIRIKTYADEASPVPSLCSLYDGANWYEREVYDLFG 197

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +FF GHPDLRRI+TDYGF+GHPLRKDFP+TG+ E+ +D++ K++V  P+ + Q  R+   
Sbjct: 198 VFFVGHPDLRRIMTDYGFDGHPLRKDFPLTGYTEIRFDEEKKRIVVEPLGVTQAFRNLRG 257

Query: 182 LS-PWEGVNSLFAKEDS 197
            +  WE   +L      
Sbjct: 258 GTAAWETWQNLAPALPK 274


>gi|209916088|gb|ACI95883.1| NADH dehydrogenase subunit 9 [Isoetes engelmannii]
 gi|217331584|gb|ACK38310.1| NADH dehydrogenase subunit 9 [Isoetes engelmannii]
 gi|241912114|gb|ACS71777.1| NADH dehydrogenase subunit 9 [Isoetes engelmannii]
 gi|314908356|gb|ADT62125.1| NADH dehydrogenase subunit 9 [Isoetes engelmannii]
          Length = 185

 Score =  206 bits (525), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 85/175 (48%), Positives = 114/175 (65%)

Query: 15  SFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDV 74
           +    +     S  E  L  +   L  L  FL+   +  F  +ID+CGVD+ SR  RF+V
Sbjct: 11  AIPKWINQCQTSKRENLLYTNPDYLFQLLWFLKYHTNTRFQVLIDICGVDYPSRKERFEV 70

Query: 75  VYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRIL 134
           VY+ LS   N R+R+  +  E   + S+V I+P A W+EREVWDM+G+FF  HPDLRRIL
Sbjct: 71  VYNLLSVDCNTRVRISTSYDEITPICSVVSIFPSAGWWEREVWDMFGVFFSNHPDLRRIL 130

Query: 135 TDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEGVN 189
           TDYGFEGHPLRKDFP++G+VE+ YDD  K+VV  P+E+ QE R +D  SPWE ++
Sbjct: 131 TDYGFEGHPLRKDFPLSGYVEVRYDDSEKRVVSEPIEMTQEFRYFDLASPWEQMS 185


>gi|150406474|ref|YP_001315138.1| NADH dehydrogenase subunit 9 [Chlorokybus atmophyticus]
 gi|126507711|gb|ABO15108.1| NADH dehydrogenase subunit 9 [Chlorokybus atmophyticus]
          Length = 227

 Score =  206 bits (525), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 85/190 (44%), Positives = 125/190 (65%)

Query: 6   EDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDF 65
           E+    ++ +    +  ++    E+ +  D   +V    FLRD        ++D+CGVD+
Sbjct: 36  ENFLKSLIATVPKWIERSMVIKNEMIIYTDPEYIVPFLFFLRDHMGTQVKILLDICGVDY 95

Query: 66  LSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFE 125
            SR +RF+VVY+ L+ +YN R+R+K  V E   V S+V ++  A W+EREVWD++GIFF 
Sbjct: 96  PSRKDRFEVVYNLLTIQYNSRIRIKTCVDEITPVSSVVSVFNSAAWWEREVWDLFGIFFS 155

Query: 126 GHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPW 185
            HPDLRRILTDYGFEGHPLRKDFP++G+VE+ YDD  K+VV   +E+ QE R +DF SPW
Sbjct: 156 NHPDLRRILTDYGFEGHPLRKDFPLSGYVEVRYDDAEKRVVSESIEMAQEFRYFDFSSPW 215

Query: 186 EGVNSLFAKE 195
           E ++ +  ++
Sbjct: 216 EDIDKMKTEK 225


>gi|110816055|ref|YP_684387.1| NADH dehydrogenase subunit 9 [Oltmannsiellopsis viridis]
 gi|86450266|gb|ABC96345.1| NADH dehydrogenase subunit 9 [Oltmannsiellopsis viridis]
          Length = 188

 Score =  206 bits (525), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 84/184 (45%), Positives = 118/184 (64%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +     L  YI+ +    ++F V+    + L      LV+LC FL+ + +  +  ++D+C
Sbjct: 1   MEVKNRLASYILKTVPNLIKFCVSRRDSVVLYTTPDKLVALCKFLKYNVNTQYKVLVDVC 60

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
           GVD+ SR  RF++VY+FLS  YN R+ VK  V E   +PS+   +  A W+EREVWD+ G
Sbjct: 61  GVDYPSRELRFEIVYNFLSVSYNSRICVKTCVDETTPIPSVTPTFSAAGWYEREVWDLLG 120

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           +F  GHPDLRRILTDYGFEGHPLRKDFP+TG+ E+ YD   K+V+  P +L Q  R ++F
Sbjct: 121 VFISGHPDLRRILTDYGFEGHPLRKDFPLTGYSEVRYDHNEKRVIKEPTQLSQNFRYFNF 180

Query: 182 LSPW 185
            SPW
Sbjct: 181 NSPW 184


>gi|262277299|ref|ZP_06055092.1| NADH-quinone oxidoreductase subunit c (nadhdehydrogenase i subunit
           c) (ndh-1 subunit c) [alpha proteobacterium HIMB114]
 gi|262224402|gb|EEY74861.1| NADH-quinone oxidoreductase subunit c (nadhdehydrogenase i subunit
           c) (ndh-1 subunit c) [alpha proteobacterium HIMB114]
          Length = 199

 Score =  206 bits (524), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 75/199 (37%), Positives = 120/199 (60%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           ++ ++++   I  S +            L    +   L+     L+      F  ++D+ 
Sbjct: 1   MKSLDEMKTIIEGSPNFRFAKIEFQNDNLVCHCNADQLIDNVVQLKRHSDLKFRQLVDIL 60

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD+ +R  RF+++Y FLS + N R+ +KI + + + + ++  ++P A+W EREV+DM G
Sbjct: 61  AVDYPNREKRFEIIYLFLSHENNLRISIKIDLEDQQKIQTLTNVFPSANWLEREVFDMNG 120

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           I F  HPDLRRILTDY FEG PLRKDFP+TG+ E+ YD + KKVVY PV+L Q +RD+DF
Sbjct: 121 IEFSDHPDLRRILTDYNFEGFPLRKDFPLTGYKEVRYDPETKKVVYGPVKLQQAYRDFDF 180

Query: 182 LSPWEGVNSLFAKEDSKDD 200
            SPW+G + +  +++   +
Sbjct: 181 KSPWQGPDYIKKQQEKSGE 199


>gi|332375566|gb|AEE62924.1| unknown [Dendroctonus ponderosae]
          Length = 253

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 81/183 (44%), Positives = 114/183 (62%), Gaps = 1/183 (0%)

Query: 5   IEDLGDYIVNSFSGSVRFAVNSVG-ELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGV 63
           +++ G Y+       V+    +   EL + V    L+    FL+D  +     ++++C +
Sbjct: 48  LKEFGAYVNECLPKFVQKVQFNHCKELEIMVAPDGLLPTMQFLKDHHNSQMECLMEVCAI 107

Query: 64  DFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIF 123
           D   R  RF+++Y+ LS +Y  R+RVK    E   + S+ GIY  ADW EREVWD++G+F
Sbjct: 108 DVPGRVFRFELIYNLLSLRYKSRIRVKTYTDEVTPIDSVTGIYKSADWPEREVWDLHGVF 167

Query: 124 FEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLS 183
           F  HPDLRRILTDYGF+GHPLRKDFP++G+ E  YDD+ K+VV  PVE  QE R +D  S
Sbjct: 168 FANHPDLRRILTDYGFDGHPLRKDFPLSGYYESRYDDEKKRVVLEPVEFAQEFRQFDLSS 227

Query: 184 PWE 186
           PWE
Sbjct: 228 PWE 230


>gi|156372565|ref|XP_001629107.1| predicted protein [Nematostella vectensis]
 gi|156216100|gb|EDO37044.1| predicted protein [Nematostella vectensis]
          Length = 193

 Score =  205 bits (522), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 83/193 (43%), Positives = 124/193 (64%), Gaps = 1/193 (0%)

Query: 5   IEDLGDYIVNSFSGSVRFAVNSVG-ELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGV 63
           + + G+Y+ N     V+ A  +   EL + +  G +V + +FLRD  +  F ++ DL  +
Sbjct: 1   LSEFGEYVANILPKYVQQAQVNHCKELEILIAPGGIVPVLTFLRDHTNAEFKSMADLTAI 60

Query: 64  DFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIF 123
           D  SR  RF+++Y+ LS  YN R+RVK    E  ++ +   ++  A+W+EREVWDMYG+F
Sbjct: 61  DVPSRPYRFEIIYNLLSLTYNSRIRVKTYTDELTAIDTASEVHRIANWYEREVWDMYGVF 120

Query: 124 FEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLS 183
           F  HPDLRRILTDYGFEGHP RKDFPV G+VE+ YDD++K++V  P+E+ QE+R +D   
Sbjct: 121 FSNHPDLRRILTDYGFEGHPFRKDFPVQGYVEVRYDDELKRLVCEPIEMAQEYRKFDISP 180

Query: 184 PWEGVNSLFAKED 196
            WE   +    ++
Sbjct: 181 TWEQFPTFRKDKE 193


>gi|323398658|ref|YP_004222733.1| NADH dehydrogenase subunit 9 [Glaucocystis nostochinearum]
 gi|321401351|gb|ADW83105.1| NADH dehydrogenase subunit 9 [Glaucocystis nostochinearum]
          Length = 196

 Score =  205 bits (521), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 86/191 (45%), Positives = 122/191 (63%), Gaps = 5/191 (2%)

Query: 1   MVRK-----IEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFV 55
           M        +E+ G  + +     ++       EL +  +   L  L  FL++  H  + 
Sbjct: 1   MNENINIITLENYGKSLFSIMPKFIQNVEIIYNELIITTNSKYLFQLVYFLKNYSHAQYK 60

Query: 56  NIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFERE 115
            + D+ GVDFL    RF V Y FLS  +N R+RVK  V+E +++ SIV ++P A+W+ERE
Sbjct: 61  LLSDIAGVDFLENKKRFLVSYQFLSILFNTRIRVKAYVSEFEAIESIVPLHPSANWYERE 120

Query: 116 VWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQE 175
           VWD+YG+FF  HPDLRRILTDYGFEGHPLRKDFP++G+ E+ YDD +K+VV  P+E+ QE
Sbjct: 121 VWDLYGVFFINHPDLRRILTDYGFEGHPLRKDFPLSGYTEVRYDDSLKQVVCEPLEITQE 180

Query: 176 HRDYDFLSPWE 186
            R++DF S W+
Sbjct: 181 FRNFDFWSYWD 191


>gi|11497471|ref|NP_042261.1| NADH dehydrogenase (ubiquinone), subunit 9 [Prototheca wickerhamii]
 gi|6647673|sp|Q37622|NDUS3_PROWI RecName: Full=NADH-ubiquinone oxidoreductase subunit 9
 gi|467862|gb|AAD12649.1| NADH dehydrogenase (ubiquinone), subunit 9 [Prototheca wickerhamii]
          Length = 192

 Score =  205 bits (521), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 83/184 (45%), Positives = 115/184 (62%)

Query: 6   EDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDF 65
            +    I+      +++ V+   E +  V    L     FLRD     +   ID+   D+
Sbjct: 3   NNFEKSILLMVPQWIQYHVSHRNETTFYVYPEYLKPFLYFLRDHMSTQYKVCIDITAADY 62

Query: 66  LSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFE 125
            SR++RF+ VY+ LS +YN R+R+K  V E  ++ S+  +Y  A W+EREVWDM+G+FF 
Sbjct: 63  PSRASRFECVYNLLSVEYNSRIRIKTCVDEITTLESVTPVYSSAAWWEREVWDMFGVFFH 122

Query: 126 GHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPW 185
            HPDLRRILTDYGF+GHPLRKDFP++G+VE+ YDD  K+V    VE  QE R +DF SPW
Sbjct: 123 NHPDLRRILTDYGFQGHPLRKDFPLSGYVEVRYDDSEKRVCIESVEYSQEFRYFDFESPW 182

Query: 186 EGVN 189
           E V+
Sbjct: 183 EQVD 186


>gi|321268765|gb|ADW79214.1| NADH dehydrogenase subunit 9 [Cyanophora paradoxa]
          Length = 198

 Score =  204 bits (519), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 84/186 (45%), Positives = 120/186 (64%)

Query: 4   KIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGV 63
            ++     I       ++       EL L V+  +L S   FL+   +  +  + D+  V
Sbjct: 13  SLKHFSQLITKIIPRLIKDVFIINNELILIVENNNLNSTLFFLKYHTYTQYKVLCDITAV 72

Query: 64  DFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIF 123
           DFL R  RF+VVY FLS  Y  RLR+K+ + E + + SI  +YP A+W+ERE+WD++GIF
Sbjct: 73  DFLDRIERFEVVYQFLSVSYASRLRIKVNLKETELINSISTLYPCANWYEREIWDLFGIF 132

Query: 124 FEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLS 183
           F  HPDLRRILTDYGFEGHPL+KDFP++G++E+ YDD VK+V+  PV++ QE R+++F S
Sbjct: 133 FMNHPDLRRILTDYGFEGHPLKKDFPLSGYLEVRYDDIVKQVICEPVDITQEFRNFNFSS 192

Query: 184 PWEGVN 189
           PWE   
Sbjct: 193 PWEITQ 198


>gi|312796900|ref|YP_004029822.1| NADH-quinone oxidoreductase chain C [Burkholderia rhizoxinica HKI
           454]
 gi|312168675|emb|CBW75678.1| NADH-quinone oxidoreductase chain C (EC 1.6.5.3) [Burkholderia
           rhizoxinica HKI 454]
          Length = 200

 Score =  204 bits (519), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 82/203 (40%), Positives = 118/203 (58%), Gaps = 18/203 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  K+E L   +  +    ++ A  S+G+L++ V   DL+ + + LRDDP   F  + DL
Sbjct: 1   MANKLETLKANLDKALGNKLKSATESLGQLTIVVAASDLIDVATRLRDDPTLGFKQLTDL 60

Query: 61  CGVDFLSRS------NRFDVVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADWF 112
           CGVD+ +         RF  V H LS + N RLRV++   +      PS++ ++   +W+
Sbjct: 61  CGVDYSTYGDGAYDGPRFAAVSHLLSIRNNWRLRVRVFAPDDDVPILPSLIDVWNSVNWY 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D+YGI FEGHPDLRRILTDYGF GHP RKDFP++G+VE+ YD   K+VVY+PV +
Sbjct: 121 EREAFDLYGIVFEGHPDLRRILTDYGFIGHPFRKDFPLSGYVEMRYDAAEKRVVYQPVTI 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKE 195
                      P E    +  +E
Sbjct: 181 E----------PREITPRVIREE 193


>gi|327195244|ref|YP_004339026.1| NADH dehydrogenase subunit 9 [Coccomyxa sp. C-169]
 gi|325070740|gb|ADY75468.1| NADH dehydrogenase subunit 9 [Coccomyxa sp. C-169]
          Length = 189

 Score =  203 bits (517), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 88/181 (48%), Positives = 116/181 (64%)

Query: 6   EDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDF 65
           +   + ++      V+   +S  E  L V    LVS   FLRD  +     +ID+  +D 
Sbjct: 3   QRFTNSLIKIVPKWVQHLQSSQEEAVLFVYPQHLVSFLLFLRDYTNTQCKQLIDITAIDN 62

Query: 66  LSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFE 125
            SRS+RF VVY  LS +YN R+RVK  + E   + S  G++  A W+EREVWDM+GIFF 
Sbjct: 63  PSRSSRFQVVYQLLSVQYNARIRVKSCIDEVTPISSATGVFSCAAWWEREVWDMFGIFFY 122

Query: 126 GHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPW 185
            HPDLRRILTDYGF+GHPLRKDFP+TG+VE+ YDD  K+V+   VE+ QE R +DF +PW
Sbjct: 123 DHPDLRRILTDYGFQGHPLRKDFPLTGYVEVRYDDSEKRVITEAVEISQEFRYFDFSTPW 182

Query: 186 E 186
           E
Sbjct: 183 E 183


>gi|167585973|ref|ZP_02378361.1| NADH (or F420H2) dehydrogenase, subunit C [Burkholderia ubonensis
           Bu]
          Length = 200

 Score =  203 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 88/203 (43%), Positives = 118/203 (58%), Gaps = 18/203 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  KIE L   +  +    V     +VGEL+L V   D + + + LRDDP   F  +IDL
Sbjct: 1   MASKIETLKANLEAALGARVVSLTEAVGELTLVVKASDYLEVATTLRDDPKLRFEQLIDL 60

Query: 61  CGVDFLSRS------NRFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWF 112
           CG+D+ +         RF  V H LS   N RLRV++   +     VPS+V I+  A+W+
Sbjct: 61  CGLDYQTYGDGAYDGPRFAAVSHLLSVTNNWRLRVRVFAPDDDLPIVPSVVDIWTSANWY 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D+YGI FEGHPDLRRILTDYGF GHP RKDFPV+G+VE+ YD + K+VVY+PV +
Sbjct: 121 EREAFDLYGIVFEGHPDLRRILTDYGFIGHPFRKDFPVSGYVEMRYDPEEKRVVYQPVTI 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKE 195
                      P E    +  ++
Sbjct: 181 E----------PREITPRVIRED 193


>gi|107023186|ref|YP_621513.1| NADH dehydrogenase subunit C [Burkholderia cenocepacia AU 1054]
 gi|116690268|ref|YP_835891.1| NADH dehydrogenase subunit C [Burkholderia cenocepacia HI2424]
 gi|170733607|ref|YP_001765554.1| NADH dehydrogenase subunit C [Burkholderia cenocepacia MC0-3]
 gi|206560701|ref|YP_002231466.1| NADH dehydrogenase subunit C [Burkholderia cenocepacia J2315]
 gi|254247659|ref|ZP_04940980.1| NADH (or F420H2) dehydrogenase, subunit C [Burkholderia cenocepacia
           PC184]
 gi|123371444|sp|Q1BV15|NUOC_BURCA RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|218534251|sp|B1JVN9|NUOC_BURCC RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|218534253|sp|B4E5M0|NUOC_BURCJ RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|218534265|sp|A0K921|NUOC_BURCH RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|105893375|gb|ABF76540.1| NADH dehydrogenase subunit C [Burkholderia cenocepacia AU 1054]
 gi|116648357|gb|ABK08998.1| NADH dehydrogenase subunit C [Burkholderia cenocepacia HI2424]
 gi|124872435|gb|EAY64151.1| NADH (or F420H2) dehydrogenase, subunit C [Burkholderia cenocepacia
           PC184]
 gi|169816849|gb|ACA91432.1| NADH (or F420H2) dehydrogenase, subunit C [Burkholderia cenocepacia
           MC0-3]
 gi|198036743|emb|CAR52643.1| NADH dehydrogenase I chain C [Burkholderia cenocepacia J2315]
          Length = 200

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 86/203 (42%), Positives = 115/203 (56%), Gaps = 18/203 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  KIE L   +  +    V     ++GEL+L V   D + +   LRDDP   F  +IDL
Sbjct: 1   MASKIETLKANLEAALGARVVSLTEAIGELTLVVKASDYLEVAKTLRDDPKLRFEQLIDL 60

Query: 61  CGVDFLSRS------NRFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWF 112
           CGVD+ +         RF  V H LS   N RLR++    +     V S+V I+  A+W+
Sbjct: 61  CGVDYQTFGDGAYDGPRFAAVSHLLSVTNNWRLRLRAFAPDDDLPIVASLVDIWTSANWY 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D+YGI FEGHPDLRRILTDYGF GHP RKDFPV+G+VE+ YD + K+VVY+PV +
Sbjct: 121 EREAFDLYGIVFEGHPDLRRILTDYGFIGHPFRKDFPVSGYVEMRYDPEEKRVVYQPVTI 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKE 195
                      P E    +  ++
Sbjct: 181 E----------PREITPRVIRED 193


>gi|309781854|ref|ZP_07676587.1| NADH dehydrogenase (ubiquinone), C subunit [Ralstonia sp.
           5_7_47FAA]
 gi|308919495|gb|EFP65159.1| NADH dehydrogenase (ubiquinone), C subunit [Ralstonia sp.
           5_7_47FAA]
          Length = 200

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 79/204 (38%), Positives = 110/204 (53%), Gaps = 18/204 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  K+  L   +  +    V+    S+GEL+L V   D   +   LRDD    F  +IDL
Sbjct: 1   MTEKLATLKAALEKALGDRVQSLTESIGELTLVVKAADYYDVMRTLRDDASLKFEQLIDL 60

Query: 61  CGVDFLSRSNRFD------VVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADWF 112
           CGVD+    +          V H LS  +N R+RV++   +       S+  I+  ADW+
Sbjct: 61  CGVDYADYGDGAWNGPRFAAVSHLLSITHNWRVRVRVFAPDDDLPVVASVTTIWNSADWY 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D+YG+ FEGHPDLRRILTDYGF GHP RKDFPV+G+VE+ YD   ++VVY+PV +
Sbjct: 121 EREAFDLYGLVFEGHPDLRRILTDYGFIGHPFRKDFPVSGYVEMRYDPVQRRVVYQPVTI 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKED 196
                      P E    +  ++ 
Sbjct: 181 E----------PREITPRVIREDQ 194


>gi|300703644|ref|YP_003745246.1| NADH-quinone oxidoreductase subunit C [Ralstonia solanacearum
           CFBP2957]
 gi|299071307|emb|CBJ42625.1| NADH-quinone oxidoreductase subunit C [Ralstonia solanacearum
           CFBP2957]
          Length = 200

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 81/204 (39%), Positives = 112/204 (54%), Gaps = 18/204 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  K+  L   +  +    ++    +VGEL+L V   D +     LRDD    F  +IDL
Sbjct: 1   MTDKLATLKAALEKALGDRIQSLTEAVGELTLVVKAADYLDAMRTLRDDAALKFEQLIDL 60

Query: 61  CGVDFL------SRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADWF 112
           CGVD+           RF  V H LS  +N RLRV++   +       S+V ++  ADWF
Sbjct: 61  CGVDYSAYGDGAWNGPRFAAVSHLLSITHNWRLRVRVFAPDDDLPVVASVVDVWNAADWF 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D+YG+ FEGHPDLRRILTDYGF GHP RKDFPV+G+VE+ YD   ++V+Y+PV +
Sbjct: 121 EREAFDLYGLVFEGHPDLRRILTDYGFIGHPFRKDFPVSGYVEMRYDPVQRRVIYQPVTI 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKED 196
                      P E    +  ++ 
Sbjct: 181 E----------PREITPRVIREDQ 194


>gi|148284881|ref|YP_001248971.1| NADH dehydrogenase I chain C [Orientia tsutsugamushi str. Boryong]
 gi|146740320|emb|CAM80724.1| NADH dehydrogenase I chain C [Orientia tsutsugamushi str. Boryong]
          Length = 195

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 73/186 (39%), Positives = 120/186 (64%), Gaps = 1/186 (0%)

Query: 5   IEDLGDYIVNSFS-GSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGV 63
           +++L + + + F+  S+    N    +   ++   L+ +   L++D    F  + D+   
Sbjct: 6   LKELKELVESQFAISSISAKFNITNHVEAIINKEQLIEVLKLLKNDKELKFTILTDVFAA 65

Query: 64  DFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIF 123
           DF  R+ RF++VY+ LS   N RL VKI + + + + S   ++  A+W+ERE++D++GI 
Sbjct: 66  DFPDRNKRFEIVYNLLSIIKNIRLIVKINLNDNELIQSATPVFSNANWYEREIYDLFGIK 125

Query: 124 FEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLS 183
           F  HP L+RILTDYGF GHPLRKDF ++G+ ++ YDDK++KVVY PV+L QE+R+++F S
Sbjct: 126 FANHPHLKRILTDYGFVGHPLRKDFALSGYSQVKYDDKLEKVVYEPVKLDQEYRNFNFSS 185

Query: 184 PWEGVN 189
           PW+G  
Sbjct: 186 PWQGPK 191


>gi|161524206|ref|YP_001579218.1| NADH dehydrogenase subunit C [Burkholderia multivorans ATCC 17616]
 gi|189351037|ref|YP_001946665.1| NADH dehydrogenase subunit C [Burkholderia multivorans ATCC 17616]
 gi|221199658|ref|ZP_03572702.1| NADH dehydrogenase I, C subunit [Burkholderia multivorans CGD2M]
 gi|221205442|ref|ZP_03578457.1| NADH dehydrogenase I, C subunit [Burkholderia multivorans CGD2]
 gi|221211737|ref|ZP_03584716.1| NADH dehydrogenase I, C subunit [Burkholderia multivorans CGD1]
 gi|218534254|sp|A9AFY9|NUOC_BURM1 RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|160341635|gb|ABX14721.1| NADH (or F420H2) dehydrogenase, subunit C [Burkholderia multivorans
           ATCC 17616]
 gi|189335059|dbj|BAG44129.1| NADH dehydrogenase I chain C [Burkholderia multivorans ATCC 17616]
 gi|221169098|gb|EEE01566.1| NADH dehydrogenase I, C subunit [Burkholderia multivorans CGD1]
 gi|221174280|gb|EEE06712.1| NADH dehydrogenase I, C subunit [Burkholderia multivorans CGD2]
 gi|221180943|gb|EEE13346.1| NADH dehydrogenase I, C subunit [Burkholderia multivorans CGD2M]
          Length = 200

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 87/203 (42%), Positives = 118/203 (58%), Gaps = 18/203 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  KIE L   +  +    V     ++GEL+L V   D + + + LRDDP   F  +IDL
Sbjct: 1   MASKIETLKANLEAALGARVVSLTEAIGELTLVVKASDYLDVATTLRDDPKLRFEQLIDL 60

Query: 61  CGVDFLSRS------NRFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWF 112
           CGVD+ +         RF  V H LS   N RLR+++   +     VPS+V I+  A+W+
Sbjct: 61  CGVDYQTYGDGAYDGPRFAAVTHLLSVTNNWRLRLRVFAPDDDLPIVPSLVDIWNSANWY 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D+YGI FEGHPDLRRILTDYGF GHP RKDFPV+G+VE+ YD + K+VVY+PV +
Sbjct: 121 EREAFDLYGIVFEGHPDLRRILTDYGFIGHPFRKDFPVSGYVEMRYDPEEKRVVYQPVTI 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKE 195
                      P E    +  ++
Sbjct: 181 E----------PREITPRVIRED 193


>gi|325520399|gb|EGC99517.1| NADH dehydrogenase subunit C [Burkholderia sp. TJI49]
          Length = 200

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 86/203 (42%), Positives = 117/203 (57%), Gaps = 18/203 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  KIE L   +  +    V     ++GEL+L V   D + + + LRDDP   F  +IDL
Sbjct: 1   MASKIETLKANLEAALGARVVSLTEAIGELTLVVKASDYLEVATTLRDDPKLRFEQLIDL 60

Query: 61  CGVDFLSRS------NRFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWF 112
           CGVD+ +         RF  V H LS   N RLR+++   +     V S+V I+  A+W+
Sbjct: 61  CGVDYQTFGDGAYDGPRFAAVSHLLSVTNNWRLRLRVFAPDDDLPIVASLVDIWTSANWY 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D+YGI FEGHPDLRRILTDYGF GHP RKDFPV+G+VE+ YD + K+VVY+PV +
Sbjct: 121 EREAFDLYGIVFEGHPDLRRILTDYGFIGHPFRKDFPVSGYVEMRYDPEEKRVVYQPVTI 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKE 195
                      P E    +  ++
Sbjct: 181 E----------PREITPRVIRED 193


>gi|321268760|gb|ADW79209.1| NADH dehydrogenase subunit 9 [Cyanophora paradoxa]
          Length = 198

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 84/186 (45%), Positives = 120/186 (64%)

Query: 4   KIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGV 63
            ++     I       ++       EL L V+  +L S   FL+   +  +  + D+  V
Sbjct: 13  SLKHFSQLITKIIPRLIKDVFIINNELILIVENNNLNSTLFFLKYHTYTQYKVLCDITAV 72

Query: 64  DFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIF 123
           DFL R  RF+VVY FLS  Y  RLR+K+ + E + + SI  +YP A+W+ERE+WD++GIF
Sbjct: 73  DFLDRIERFEVVYQFLSVSYASRLRIKVNLKETELINSISMLYPCANWYEREIWDLFGIF 132

Query: 124 FEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLS 183
           F  HPDLRRILTDYGFEGHPL+KDFP++G++E+ YDD VK+V+  PV++ QE R+++F S
Sbjct: 133 FMNHPDLRRILTDYGFEGHPLKKDFPLSGYLEVRYDDIVKQVICEPVDITQEFRNFNFSS 192

Query: 184 PWEGVN 189
           PWE   
Sbjct: 193 PWEITQ 198


>gi|189183820|ref|YP_001937605.1| NADH dehydrogenase I chain C [Orientia tsutsugamushi str. Ikeda]
 gi|189180591|dbj|BAG40371.1| NADH dehydrogenase I chain C [Orientia tsutsugamushi str. Ikeda]
          Length = 196

 Score =  202 bits (513), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 74/191 (38%), Positives = 120/191 (62%), Gaps = 1/191 (0%)

Query: 5   IEDLGDYIVNSFS-GSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGV 63
           +++L + + + F+  S+    N    +   +    L+ +   L++D    F  + D+   
Sbjct: 6   LKELKELVESQFAISSISAKFNITNHVEAIIHKEQLIEVLKLLKNDKELKFTILTDIFAA 65

Query: 64  DFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIF 123
           DF  R+ RF++VY+ LS   N RL VKI + + + + S   ++  A+W+ERE++D++GI 
Sbjct: 66  DFPDRNKRFEIVYNLLSIIKNIRLIVKINLNDNELIQSATPVFSNANWYEREIYDLFGIK 125

Query: 124 FEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLS 183
           F  HP L+RILTDYGF GHPLRKDF ++G+ ++ YDDK++KVVY PV+L QE+R+++F S
Sbjct: 126 FANHPHLKRILTDYGFVGHPLRKDFALSGYSQVKYDDKLEKVVYEPVKLDQEYRNFNFSS 185

Query: 184 PWEGVNSLFAK 194
           PW+G  S    
Sbjct: 186 PWQGPKSTIQD 196


>gi|241663482|ref|YP_002981842.1| NADH dehydrogenase subunit C [Ralstonia pickettii 12D]
 gi|240865509|gb|ACS63170.1| NADH (or F420H2) dehydrogenase, subunit C [Ralstonia pickettii 12D]
          Length = 200

 Score =  202 bits (513), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 79/204 (38%), Positives = 110/204 (53%), Gaps = 18/204 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  K+  L   +  +    V+    S+GEL+L V   D   +   LRDD    F  +IDL
Sbjct: 1   MTEKLATLKAALEKALGDRVQSLTESIGELTLVVKAADYYDVMRTLRDDASLKFEQLIDL 60

Query: 61  CGVDFLSRSNRFD------VVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADWF 112
           CGVD+    +          V H LS  +N R+RV++   +       S+  I+  ADW+
Sbjct: 61  CGVDYADYGDGAWNGPRFAGVSHLLSITHNWRVRVRVFAPDDDLPVVASVTTIWNSADWY 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D+YG+ FEGHPDLRRILTDYGF GHP RKDFPV+G+VE+ YD   ++VVY+PV +
Sbjct: 121 EREAFDLYGLVFEGHPDLRRILTDYGFIGHPFRKDFPVSGYVEMRYDPVQRRVVYQPVTI 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKED 196
                      P E    +  ++ 
Sbjct: 181 E----------PREITPRVIREDQ 194


>gi|116202719|ref|XP_001227171.1| hypothetical protein CHGG_09244 [Chaetomium globosum CBS 148.51]
 gi|88177762|gb|EAQ85230.1| hypothetical protein CHGG_09244 [Chaetomium globosum CBS 148.51]
          Length = 284

 Score =  202 bits (513), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 73/189 (38%), Positives = 112/189 (59%), Gaps = 7/189 (3%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
              +   G +++      ++       EL++ +             D+    F  +  + 
Sbjct: 77  SDNMHKYGSWLMGCLPKYIQQFSVWKDELTIYIPPFRRYP------DNTAAEFTQMSTIT 130

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VDF +R  RF++VY+ LS ++N R+RVK    E   VPS   ++ GA+W+EREV+DM+G
Sbjct: 131 AVDFPTRDQRFEIVYNLLSVRHNSRIRVKTYADETTPVPSATPLFDGANWYEREVYDMFG 190

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD- 180
           +FF  HPDLRRI+TDYGFEGHPLRKDFPVTG+ E+ +D++ K++V  P+EL Q  R+++ 
Sbjct: 191 VFFLNHPDLRRIMTDYGFEGHPLRKDFPVTGYTEIRWDEEKKRIVTEPLELTQAFRNFEG 250

Query: 181 FLSPWEGVN 189
             S WE + 
Sbjct: 251 GSSAWEQIG 259


>gi|300311097|ref|YP_003775189.1| NADH dehydrogenase I subunit C [Herbaspirillum seropedicae SmR1]
 gi|300073882|gb|ADJ63281.1| NADH dehydrogenase I (Chain C) oxidoreductase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 198

 Score =  202 bits (513), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 79/204 (38%), Positives = 116/204 (56%), Gaps = 18/204 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  K+E L   + N+  G ++    ++GE+++ V   D +S    LRD     F  +IDL
Sbjct: 1   MTTKLETLEAALRNALGGYLQNLTVALGEVTVVVKAADYLSAMRVLRDHADTRFEQLIDL 60

Query: 61  CGVDFLSRSNRFD------VVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWF 112
           CGVD+ +  +         VV H +S  +N R+RV++   +     V S+  I+  A W+
Sbjct: 61  CGVDYSTYGDGAWEGPRFAVVSHLMSIAHNWRVRVRVFAPDDDLPIVASVDPIWNSAGWY 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D YGI F+GHPDLRRILTDYGF GHP RKDFPV+G+VE+ YD + K+V+Y+PV +
Sbjct: 121 EREAFDFYGILFDGHPDLRRILTDYGFIGHPFRKDFPVSGYVEMRYDAEQKRVIYQPVTI 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKED 196
                      P E    +  +E+
Sbjct: 181 E----------PREITPRIIREEN 194


>gi|167562179|ref|ZP_02355095.1| NADH dehydrogenase subunit C [Burkholderia oklahomensis EO147]
 gi|167569424|ref|ZP_02362298.1| NADH dehydrogenase subunit C [Burkholderia oklahomensis C6786]
          Length = 200

 Score =  202 bits (513), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 90/203 (44%), Positives = 117/203 (57%), Gaps = 18/203 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  KIE L   +  +    V   V +VGEL+L V  GD + +   LRDD    F  +IDL
Sbjct: 1   MASKIETLKANLEAALGARVVSLVEAVGELTLVVKAGDYLEVAKALRDDRTLGFEQLIDL 60

Query: 61  CGVDFLSRS------NRFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWF 112
           CGVD+ +         RF  V H LS   N RLRV++         VPSIV ++  A+W+
Sbjct: 61  CGVDYQTYGDGAYDGPRFAAVLHLLSIANNWRLRVRVFAPNDDLPIVPSIVDVWNSANWY 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D+YGI FEGHPDLRRILTDYGF GHP RKDFPV+G+VE+ YD + K+VVY+PV +
Sbjct: 121 EREAFDLYGIVFEGHPDLRRILTDYGFIGHPFRKDFPVSGYVEMRYDPEEKRVVYQPVTI 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKE 195
                      P E    +  ++
Sbjct: 181 E----------PREITPRVIRED 193


>gi|56684557|gb|AAW21977.1| NADH dehydrogenase subunit 9 [Plasmopara viticola]
 gi|94494311|gb|ABF29491.1| NADH dehydrogenase subunit 9 [Plasmopara viticola]
 gi|94494315|gb|ABF29494.1| NADH dehydrogenase subunit 9 [Plasmopara viticola]
 gi|94494319|gb|ABF29497.1| NADH dehydrogenase subunit 9 [Plasmopara viticola]
 gi|94494323|gb|ABF29500.1| NADH dehydrogenase subunit 9 [Plasmopara viticola]
 gi|94494327|gb|ABF29503.1| NADH dehydrogenase subunit 9 [Plasmopara viticola]
 gi|94494331|gb|ABF29506.1| NADH dehydrogenase subunit 9 [Plasmopara viticola]
 gi|94494335|gb|ABF29509.1| NADH dehydrogenase subunit 9 [Plasmopara viticola]
 gi|94494339|gb|ABF29512.1| NADH dehydrogenase subunit 9 [Plasmopara viticola]
 gi|94494343|gb|ABF29515.1| NADH dehydrogenase subunit 9 [Plasmopara viticola]
 gi|94494347|gb|ABF29518.1| NADH dehydrogenase subunit 9 [Plasmopara viticola]
 gi|94494351|gb|ABF29521.1| NADH dehydrogenase subunit 9 [Plasmopara viticola]
          Length = 186

 Score =  202 bits (513), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 79/184 (42%), Positives = 125/184 (67%), Gaps = 2/184 (1%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           ++ ++    Y++N     +        EL +++    LV +  F ++  +  F  + ++C
Sbjct: 1   MKILQKFSQYLLNVLP--IVNYTLYKNELCINISTNKLVPILLFFKNHTNSQFKILSEIC 58

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD++++  RF+++Y+ LS ++N RL+VKI + E + V SI+ +Y  A+W ERE+WDM+G
Sbjct: 59  AVDYINKKKRFEIIYNLLSIRFNSRLKVKITLNELQPVNSIIKVYKSANWCEREIWDMFG 118

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           IFF  HPDLRRILTDYGFEGHPLRKDFP++GF+E+ Y++  K+VVY PV L Q++R ++F
Sbjct: 119 IFFLNHPDLRRILTDYGFEGHPLRKDFPLSGFLEVFYNELKKRVVYEPVNLAQQYRLFEF 178

Query: 182 LSPW 185
            SPW
Sbjct: 179 NSPW 182


>gi|83746299|ref|ZP_00943352.1| NADH-quinone oxidoreductase chain C [Ralstonia solanacearum UW551]
 gi|207723875|ref|YP_002254273.1| nadh dehydrogenaseI(chain c) protein [Ralstonia solanacearum MolK2]
 gi|207742737|ref|YP_002259129.1| nadh dehydrogenaseI(chain c) protein [Ralstonia solanacearum
           IPO1609]
 gi|83727049|gb|EAP74174.1| NADH-quinone oxidoreductase chain C [Ralstonia solanacearum UW551]
 gi|206589080|emb|CAQ36042.1| nadh dehydrogenaseI(chain c) protein [Ralstonia solanacearum MolK2]
 gi|206594131|emb|CAQ61058.1| nadh dehydrogenaseI(chain c) protein [Ralstonia solanacearum
           IPO1609]
          Length = 200

 Score =  202 bits (513), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 81/204 (39%), Positives = 112/204 (54%), Gaps = 18/204 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  K+  L   +       ++    +VGEL+L V   D + +   LRDD    F  +IDL
Sbjct: 1   MTDKLATLKAALEKVLGDRIQSLTEAVGELTLVVKAADYLDVMRTLRDDATLKFEQLIDL 60

Query: 61  CGVDFL------SRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADWF 112
           CGVD+           RF  V H LS  +N RLRV++   +       S+V ++  ADWF
Sbjct: 61  CGVDYSAYGDGAWNGPRFAAVSHLLSVTHNWRLRVRVFAPDDDLPVVASVVDVWNAADWF 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D+YG+ FEGHPDLRRILTDYGF GHP RKDFPV+G+VE+ YD   ++V+Y+PV +
Sbjct: 121 EREAFDLYGLVFEGHPDLRRILTDYGFIGHPFRKDFPVSGYVEMRYDPVQRRVIYQPVTI 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKED 196
                      P E    +  ++ 
Sbjct: 181 E----------PREITPRVIREDQ 194


>gi|318037333|ref|NP_001188173.1| mitochondrial NADH dehydrogenase (ubiquinone) iron-sulfur protein 3
           [Ictalurus punctatus]
 gi|308323727|gb|ADO28999.1| mitochondrial NADH dehydrogenase (ubiquinone) iron-sulfur protein 3
           [Ictalurus punctatus]
          Length = 176

 Score =  201 bits (512), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 83/166 (50%), Positives = 114/166 (68%)

Query: 34  VDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAV 93
           +    ++ + +FLRD  +  F N+ DL  VD  +R NRF++VY+ LS ++N R+RVK   
Sbjct: 2   IHPEGVLPVLTFLRDHSNAQFRNMTDLTAVDVPTRQNRFEIVYNLLSLRFNSRIRVKTYT 61

Query: 94  AEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGF 153
            E   V S V ++  A+W+EREVWDM+G+FF  HPDLRRILTDYGFEGHP RKDFP++G+
Sbjct: 62  DELTPVDSAVPVHEAANWYEREVWDMFGVFFANHPDLRRILTDYGFEGHPFRKDFPLSGY 121

Query: 154 VELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEGVNSLFAKEDSKD 199
           VE+ YDD++K+VV  PVEL QE R +D  SPWE   +    +D+  
Sbjct: 122 VEVRYDDELKRVVAEPVELAQEFRKFDLNSPWEAFPAYREPKDAPK 167


>gi|254251863|ref|ZP_04945181.1| NADH dehydrogenase I,D subunit [Burkholderia dolosa AUO158]
 gi|124894472|gb|EAY68352.1| NADH dehydrogenase I,D subunit [Burkholderia dolosa AUO158]
          Length = 200

 Score =  201 bits (512), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 84/203 (41%), Positives = 116/203 (57%), Gaps = 18/203 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  KIE L   +  +    V     ++GEL+L V   D + +   LRDDP   F  +IDL
Sbjct: 1   MASKIETLKANLEAALGARVVSLTEAIGELTLVVKASDYLDVAKTLRDDPKLRFEQLIDL 60

Query: 61  CGVDFLSRS------NRFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWF 112
           CGVD+ +         RF  V H LS   N RLR+++   +     V S+V ++  A+W+
Sbjct: 61  CGVDYQTYGDGAYDGPRFAAVTHLLSITNNWRLRLRVFAPDDDLPIVASLVDVWSSANWY 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D+YG+ FEGHPDLRRILTDYGF GHP RKDFPV+G+VE+ YD + K+VVY+PV +
Sbjct: 121 EREAFDLYGLVFEGHPDLRRILTDYGFIGHPFRKDFPVSGYVEMRYDPEEKRVVYQPVTI 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKE 195
                      P E    +  ++
Sbjct: 181 E----------PREITPRVIRED 193


>gi|78067044|ref|YP_369813.1| NADH dehydrogenase subunit C [Burkholderia sp. 383]
 gi|123568006|sp|Q39EE7|NUOC_BURS3 RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|77967789|gb|ABB09169.1| NADH dehydrogenase subunit C [Burkholderia sp. 383]
          Length = 200

 Score =  201 bits (512), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 85/203 (41%), Positives = 115/203 (56%), Gaps = 18/203 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  KIE L   +  +    V     ++GEL+L V   D + +   LRDDP   F  ++DL
Sbjct: 1   MASKIETLKANLEAALGARVVSLTEAIGELTLVVKASDYLEVAKMLRDDPKLRFEQLLDL 60

Query: 61  CGVDFLSRS------NRFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWF 112
           CGVD+ +         RF  V H LS   N RLR++    +     V S+V I+  A+W+
Sbjct: 61  CGVDYQTFGDGAYDGPRFAAVSHLLSVTNNWRLRLRAFAPDDDLPIVASLVDIWTSANWY 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D+YGI FEGHPDLRRILTDYGF GHP RKDFPV+G+VE+ YD + K+VVY+PV +
Sbjct: 121 EREAFDLYGIVFEGHPDLRRILTDYGFIGHPFRKDFPVSGYVEMRYDPEEKRVVYQPVTI 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKE 195
                      P E    +  ++
Sbjct: 181 E----------PREITPRVIRED 193


>gi|170696397|ref|ZP_02887526.1| NADH (or F420H2) dehydrogenase, subunit C [Burkholderia graminis
           C4D1M]
 gi|170138725|gb|EDT06924.1| NADH (or F420H2) dehydrogenase, subunit C [Burkholderia graminis
           C4D1M]
          Length = 200

 Score =  201 bits (511), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 83/203 (40%), Positives = 119/203 (58%), Gaps = 18/203 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  K+E L   +  +F G +     ++GEL++ V   D +++ + LRDD    F  ++DL
Sbjct: 1   MASKLETLKANLEAAFGGLLLSTTEAIGELTIVVKASDYLNVATRLRDDRSLGFEQMMDL 60

Query: 61  CGVDFLSR------SNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADWF 112
           CGVD+ +         RF  V H LS + N RLR+++          PS+V I+  A+W+
Sbjct: 61  CGVDYQTYADGAYDGPRFAAVLHLLSVQNNWRLRLRVFAPNDDMPILPSVVDIWNSANWY 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D+YGI FEGHPDLRRILTDYGF GHP RKDFPV+G+VE+ YD + K+VVY+PV +
Sbjct: 121 EREAFDLYGIVFEGHPDLRRILTDYGFIGHPFRKDFPVSGYVEMRYDPEEKRVVYQPVTI 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKE 195
                      P E    +  ++
Sbjct: 181 E----------PREITPRVIRED 193


>gi|238028141|ref|YP_002912372.1| NADH dehydrogenase subunit C [Burkholderia glumae BGR1]
 gi|237877335|gb|ACR29668.1| NADH (or F420H2) dehydrogenase, subunit C [Burkholderia glumae
           BGR1]
          Length = 200

 Score =  200 bits (510), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 83/203 (40%), Positives = 115/203 (56%), Gaps = 18/203 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  KIE L   +  +    V     +VGEL+L V   D + + + LRDD    F  +IDL
Sbjct: 1   MASKIETLKANLEAALGERVVSLTEAVGELTLVVRARDYIEVATLLRDDRKLRFEQLIDL 60

Query: 61  CGVDFLSRS------NRFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWF 112
           CGVD+ +         RF  V   LS   N RLR+++   +     + S+V I+  A+W+
Sbjct: 61  CGVDYQTYGDGAYDGPRFAAVLQLLSITNNWRLRLRVFAPDDDLPIIASVVDIWNSANWY 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D+YGI FEGHPDLRRILTDYGF GHP RKDFP++G+VE+ YD + K+VVY+PV +
Sbjct: 121 EREAFDLYGIVFEGHPDLRRILTDYGFIGHPFRKDFPLSGYVEMRYDPEEKRVVYQPVTI 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKE 195
                      P E    +  ++
Sbjct: 181 E----------PREITPRVIRED 193


>gi|308072463|dbj|BAJ22093.1| NADH dehydrogenase subunit 9 [Cycas taitungensis]
          Length = 197

 Score =  200 bits (509), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 88/199 (44%), Positives = 127/199 (63%), Gaps = 3/199 (1%)

Query: 1   MVRKIEDLGDYIVNSFSGS-VRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIID 59
           M  ++  +  Y+ ++     V     S  E  L  +   L  L  FL+   +  F  +ID
Sbjct: 1   MDNQL--IFKYLRDTLPSKWVHKMERSEHENRLYTNTDYLFQLLWFLKSHTYTRFQVLID 58

Query: 60  LCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDM 119
           +CGVD+ SR  RF+VVY+ LS +YN R+ V+ +V E   + S+V ++P A W+EREVWDM
Sbjct: 59  ICGVDYPSRKRRFEVVYNLLSTRYNSRICVRTSVDEITRISSVVSLFPSAGWWEREVWDM 118

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDY 179
           +G++F  HPDLRRILTDYGFEGHPLRKDFP++G+VE+ YDD  K+VV+ P+ + QE R +
Sbjct: 119 FGVYFINHPDLRRILTDYGFEGHPLRKDFPLSGYVEVRYDDSEKRVVFEPIGMTQEFRYF 178

Query: 180 DFLSPWEGVNSLFAKEDSK 198
           DF SPWE +      ++ +
Sbjct: 179 DFASPWEQMARSDGSDNEE 197


>gi|134296431|ref|YP_001120166.1| NADH dehydrogenase subunit C [Burkholderia vietnamiensis G4]
 gi|218534284|sp|A4JGC8|NUOC_BURVG RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|134139588|gb|ABO55331.1| NADH dehydrogenase subunit C [Burkholderia vietnamiensis G4]
          Length = 200

 Score =  200 bits (509), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 81/203 (39%), Positives = 115/203 (56%), Gaps = 18/203 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  KIE L   +  +    V     ++GEL+L V   D + +   LRDDP   F  +IDL
Sbjct: 1   MASKIETLKANLEAALGARVVSLTEAIGELTLVVKASDYLEVAKTLRDDPKLRFEQLIDL 60

Query: 61  CGVDFLSRS------NRFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWF 112
           CG+D+ +         RF  V   LS   N RLR+++   +     VPS+V  +  ++W+
Sbjct: 61  CGIDYQTYGDGAYDGPRFAAVSQLLSVTNNWRLRLRVFAPDDDLPIVPSLVDTWSSSNWY 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D+YG+ FEGHPDLRR+LTDYGF GHP RKDFPV+G+VE+ YD + K+VVY+PV +
Sbjct: 121 EREAFDLYGLVFEGHPDLRRLLTDYGFIGHPFRKDFPVSGYVEMRYDPEEKRVVYQPVTI 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKE 195
                      P E    +  ++
Sbjct: 181 E----------PREITPRVIRED 193


>gi|157827451|ref|YP_001496515.1| NADH dehydrogenase subunit C [Rickettsia bellii OSU 85-389]
 gi|157802755|gb|ABV79478.1| NADH dehydrogenase subunit C [Rickettsia bellii OSU 85-389]
          Length = 196

 Score =  200 bits (509), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 79/196 (40%), Positives = 117/196 (59%), Gaps = 1/196 (0%)

Query: 4   KIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGV 63
            +E + + +    S  +         L+  V+   L+     L++     F  + DL G 
Sbjct: 2   TLEKIIEKLAAKSSILISPITVKEN-LAYKVEPNFLLPFLKALKESEELRFTVLTDLFGS 60

Query: 64  DFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIF 123
           DF  ++ RF+VVY+ LS K N+RL +K  V+E +S+PS + I+  A W+EREV+DM+GI 
Sbjct: 61  DFPEKAKRFEVVYNLLSLKLNKRLIIKTYVSEHESIPSAMSIFNAACWYEREVYDMFGIN 120

Query: 124 FEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLS 183
           F+G+ D RRILTDY FEGHPLRKDFP+TG+ ++ YD++ KKV Y PV L  E+R++DF S
Sbjct: 121 FDGNDDKRRILTDYEFEGHPLRKDFPLTGYTQVKYDEQTKKVAYEPVNLDIEYREFDFSS 180

Query: 184 PWEGVNSLFAKEDSKD 199
           PW         ++   
Sbjct: 181 PWHSPTYTLPGDEKAK 196


>gi|209518513|ref|ZP_03267334.1| NADH (or F420H2) dehydrogenase, subunit C [Burkholderia sp. H160]
 gi|209501058|gb|EEA01093.1| NADH (or F420H2) dehydrogenase, subunit C [Burkholderia sp. H160]
          Length = 200

 Score =  200 bits (509), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 83/203 (40%), Positives = 117/203 (57%), Gaps = 18/203 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  K+E L   +  +F G +     +VGEL++ V   D +++   LRDD    F   +DL
Sbjct: 1   MASKLETLKANLEAAFGGLLLSTTEAVGELTIVVKASDYLNVAKRLRDDRTLGFEQCVDL 60

Query: 61  CGVDFLSR------SNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADWF 112
           CGVD+ +         RF  V H LS + N RLR+++   +      PS+V I+   +W+
Sbjct: 61  CGVDYQTYADGAYDGPRFAAVLHLLSVQNNWRLRLRVFAPDDDMPILPSVVEIWNSVNWY 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D+YGI FEGHPDLRRILTDYGF GHP RKDFPV+G+VE+ YD + K+VVY+PV +
Sbjct: 121 EREAFDLYGIVFEGHPDLRRILTDYGFIGHPFRKDFPVSGYVEMRYDPEEKRVVYQPVTI 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKE 195
                      P E    +  ++
Sbjct: 181 E----------PREITPRVIRED 193


>gi|91205211|ref|YP_537566.1| NADH dehydrogenase subunit C [Rickettsia bellii RML369-C]
 gi|122425873|sp|Q1RJI7|NUOC_RICBR RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|91068755|gb|ABE04477.1| NADH dehydrogenase I chain C [Rickettsia bellii RML369-C]
          Length = 196

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 78/196 (39%), Positives = 116/196 (59%), Gaps = 1/196 (0%)

Query: 4   KIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGV 63
            +E + + +    S  +         L+  V+   L+     L++     F  + DL G 
Sbjct: 2   TLEKIIEKLAAKSSILISPITVKEN-LAYKVEPNFLLPFLKALKESEELRFTVLTDLFGS 60

Query: 64  DFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIF 123
           DF  ++ RF+VVY+ LS K N+RL +K  V+E +S+PS + I+    W+EREV+DM+GI 
Sbjct: 61  DFPEKAKRFEVVYNLLSLKLNKRLIIKTYVSEHESIPSAMSIFNATCWYEREVYDMFGIN 120

Query: 124 FEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLS 183
           F+G+ D RRILTDY FEGHPLRKDFP+TG+ ++ YD++ KKV Y PV L  E+R++DF S
Sbjct: 121 FDGNDDKRRILTDYEFEGHPLRKDFPLTGYTQVKYDEQTKKVAYEPVNLDIEYREFDFSS 180

Query: 184 PWEGVNSLFAKEDSKD 199
           PW         ++   
Sbjct: 181 PWHSPTYTLPGDEKAK 196


>gi|295676039|ref|YP_003604563.1| NADH (or F420H2) dehydrogenase, subunit C [Burkholderia sp.
           CCGE1002]
 gi|295435882|gb|ADG15052.1| NADH (or F420H2) dehydrogenase, subunit C [Burkholderia sp.
           CCGE1002]
          Length = 200

 Score =  200 bits (508), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 85/203 (41%), Positives = 118/203 (58%), Gaps = 18/203 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  K+E L   +  +F G +     SVGEL++ V  GD +++   LRDD    F   +DL
Sbjct: 1   MASKLETLKANLEAAFGGLLVSVTESVGELTIVVKAGDYLNVAKRLRDDRSLGFEQCVDL 60

Query: 61  CGVDFLSR------SNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADWF 112
           CGVD+ +         RF  V H LS + N RLR+++   +      PS+V I+   +W+
Sbjct: 61  CGVDYQTYAEGAYDGPRFAAVLHLLSVQNNWRLRLRVFAPDDDMPILPSVVDIWNSVNWY 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D+YGI FEGHPDLRRILTDYGF GHP RKDFPV+G+VE+ YD + K+VVY+PV +
Sbjct: 121 EREAFDLYGIVFEGHPDLRRILTDYGFIGHPFRKDFPVSGYVEMRYDPEEKRVVYQPVTI 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKE 195
                      P E    +  ++
Sbjct: 181 E----------PREITPRVIRED 193


>gi|299066335|emb|CBJ37519.1| NADH-quinone oxidoreductase subunit C [Ralstonia solanacearum
           CMR15]
          Length = 200

 Score =  200 bits (508), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 79/204 (38%), Positives = 112/204 (54%), Gaps = 18/204 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  K+  L   +  +    ++    +VGEL+L V   D +     LRDD    F  +IDL
Sbjct: 1   MTDKLATLQSALEKALGNRIQSLTEAVGELTLVVKAADYLETMRTLRDDAALKFEQLIDL 60

Query: 61  CGVDFLSRSNRFD------VVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADWF 112
           CGVD+ +  +          V H LS  +N R+RV++   +       S+V I+  ADWF
Sbjct: 61  CGVDYSTYGDGAWNGPRFAAVSHLLSVTHNWRVRVRVFAPDDDLPVVASVVDIWNAADWF 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D+YG+ FEGHPDLRRILTDYGF GHP RKDFPV+G+VE+ YD   ++V+Y+PV +
Sbjct: 121 EREAFDLYGLVFEGHPDLRRILTDYGFIGHPFRKDFPVSGYVEMRYDPVQRRVIYQPVTI 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKED 196
                      P E    +  ++ 
Sbjct: 181 E----------PREITPRVIREDQ 194


>gi|186476762|ref|YP_001858232.1| NADH dehydrogenase subunit C [Burkholderia phymatum STM815]
 gi|218534257|sp|B2JDM6|NUOC_BURP8 RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|184193221|gb|ACC71186.1| NADH (or F420H2) dehydrogenase, subunit C [Burkholderia phymatum
           STM815]
          Length = 200

 Score =  200 bits (508), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 85/203 (41%), Positives = 118/203 (58%), Gaps = 18/203 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  K+E L   +  +F G +     S+GEL++ V   D + + + LRDD    F  +IDL
Sbjct: 1   MASKLETLKANLEAAFGGRLTSITESIGELTIVVKADDFLEVATRLRDDAKLHFEQLIDL 60

Query: 61  CGVDFLSRS------NRFDVVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADWF 112
           CG+D+ +         RF  V H LS   N RLRV++   +      PS+V I+  A+W+
Sbjct: 61  CGIDYQTYGEGAYDGPRFAAVLHLLSITNNWRLRVRVFAPDDDVPLIPSVVEIWNSANWY 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D+YGI FEGHPDLRRILTDYGF GHP RKDFPV+G+VE+ YD + K+VVY+PV +
Sbjct: 121 EREAFDLYGIVFEGHPDLRRILTDYGFIGHPFRKDFPVSGYVEMRYDPEEKRVVYQPVTI 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKE 195
                      P E    +  ++
Sbjct: 181 E----------PREITPRVIRED 193


>gi|187929291|ref|YP_001899778.1| NADH dehydrogenase subunit C [Ralstonia pickettii 12J]
 gi|218534309|sp|B2U7Q9|NUOC_RALPJ RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|187726181|gb|ACD27346.1| NADH (or F420H2) dehydrogenase, subunit C [Ralstonia pickettii 12J]
          Length = 200

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 80/204 (39%), Positives = 110/204 (53%), Gaps = 18/204 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  K+  L   +  +    V+    SVGEL+L V   D +     LRDD    F  ++DL
Sbjct: 1   MTDKLATLKAALEKALGNRVQSLTESVGELTLVVKAADYLDAMRTLRDDASLKFEQLMDL 60

Query: 61  CGVDFLSRSNRFD------VVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADWF 112
           CGVD+    +          V H LS  +N R+RV++   +       S+  I+  ADWF
Sbjct: 61  CGVDYADYGDGAWNGPRFAAVSHLLSITHNWRVRVRVFAPDDDLPVVSSVTTIWNSADWF 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D+YG+ FEGHPDLRRILTDYGF GHP RKDFPV+G+VE+ YD   ++VVY+PV +
Sbjct: 121 EREAFDLYGLVFEGHPDLRRILTDYGFIGHPFRKDFPVSGYVEMRYDPVQRRVVYQPVTI 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKED 196
                      P E    +  ++ 
Sbjct: 181 E----------PREITPRVIREDQ 194


>gi|330813984|ref|YP_004358223.1| NADH-ubiquinone oxidoreductase chain C [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327487079|gb|AEA81484.1| NADH-ubiquinone oxidoreductase chain C [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 202

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 80/175 (45%), Positives = 119/175 (68%)

Query: 27  VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRR 86
              L L+ D  +++     L+  P   F  +ID+ GVD+  +S RF+V+Y FLS + N R
Sbjct: 27  HDNLILNCDVDNIIHNIDILKRSPEFKFRQLIDILGVDYPQQSKRFEVIYLFLSHENNFR 86

Query: 87  LRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRK 146
           + +KI + + + VP++  I+P A+W EREV+DMYGI F  HPDLRRILTDY FEG+PLRK
Sbjct: 87  ISLKIKIGDEEIVPTLTDIFPSANWQEREVFDMYGIRFADHPDLRRILTDYEFEGYPLRK 146

Query: 147 DFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEGVNSLFAKEDSKDDM 201
           DFP+TG+ E+ Y  + +KV+Y PV+L Q++RD++F SPWEG   +  ++D  ++ 
Sbjct: 147 DFPLTGYKEVRYSAEHQKVIYEPVKLAQDYRDFNFESPWEGSEYIKKEQDKVEEK 201


>gi|323525438|ref|YP_004227591.1| NADH (or F420H2) dehydrogenase subunit C [Burkholderia sp.
           CCGE1001]
 gi|323382440|gb|ADX54531.1| NADH (or F420H2) dehydrogenase, subunit C [Burkholderia sp.
           CCGE1001]
          Length = 200

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 82/203 (40%), Positives = 120/203 (59%), Gaps = 18/203 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  K+E L   +  +F G +     ++GEL++ V   D +++ + LRDD    F  ++DL
Sbjct: 1   MASKLETLKANLEAAFGGLLLSTTEAIGELTIVVKASDYLNVATRLRDDRSLGFDQMMDL 60

Query: 61  CGVDFLSR------SNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADWF 112
           CGVD+ +         RF  V H LS + N RLR+++   +      PS+V ++  A+W+
Sbjct: 61  CGVDYQTYADGAYDGPRFAAVLHLLSVQNNWRLRLRVFAPDDDMPILPSVVEVWNSANWY 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D+YGI FEGHPDLRRILTDYGF GHP RKDFPV+G+VE+ YD + K+VVY+PV +
Sbjct: 121 EREAFDLYGIVFEGHPDLRRILTDYGFIGHPFRKDFPVSGYVEMRYDPEEKRVVYQPVTI 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKE 195
                      P E    +  ++
Sbjct: 181 E----------PREITPRVIRED 193


>gi|83719353|ref|YP_441616.1| NADH dehydrogenase subunit C [Burkholderia thailandensis E264]
 gi|167618533|ref|ZP_02387164.1| NADH dehydrogenase subunit C [Burkholderia thailandensis Bt4]
 gi|257139688|ref|ZP_05587950.1| NADH dehydrogenase subunit C [Burkholderia thailandensis E264]
 gi|123537637|sp|Q2SZN3|NUOC_BURTA RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|83653178|gb|ABC37241.1| NADH dehydrogenase I, C subunit [Burkholderia thailandensis E264]
          Length = 200

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 87/203 (42%), Positives = 116/203 (57%), Gaps = 18/203 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  KIE L   +  +        V +VGEL+L V   D + +   LRDD    F  +IDL
Sbjct: 1   MASKIETLKANLEAALGARAVSLVEAVGELTLVVKASDYLEVAKQLRDDRSLGFEQLIDL 60

Query: 61  CGVDFLSRS------NRFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWF 112
           CG+D+ +         RF  V H LS   N RLRV++   +     VPS+V I+  A+W+
Sbjct: 61  CGIDYQTYGDGAYDGPRFAAVLHLLSVANNWRLRVRVFAPDDDLPIVPSVVDIWNSANWY 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D+YGI FEGHPDLRRILTDYGF GHP RKDFPV+G+VE+ YD + K+VVY+PV +
Sbjct: 121 EREAFDLYGIVFEGHPDLRRILTDYGFIGHPFRKDFPVSGYVEMRYDPEEKRVVYQPVTI 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKE 195
                      P E    +  ++
Sbjct: 181 E----------PREITPRVIRED 193


>gi|167580424|ref|ZP_02373298.1| NADH dehydrogenase subunit C [Burkholderia thailandensis TXDOH]
          Length = 200

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 86/203 (42%), Positives = 116/203 (57%), Gaps = 18/203 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  KIE L   +  +        V +VGEL+L V   D + +   LRDD    F  +IDL
Sbjct: 1   MASKIETLKANLEAALGARAVSLVEAVGELTLVVKASDYLEVAKQLRDDRSLGFEQLIDL 60

Query: 61  CGVDFLSRS------NRFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWF 112
           CG+D+ +         RF  V H LS   N RLR+++   +     VPS+V I+  A+W+
Sbjct: 61  CGIDYQTYGDGAYDGPRFAAVLHLLSVANNWRLRLRVFAPDDDLPIVPSVVDIWNSANWY 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D+YGI FEGHPDLRRILTDYGF GHP RKDFPV+G+VE+ YD + K+VVY+PV +
Sbjct: 121 EREAFDLYGIVFEGHPDLRRILTDYGFIGHPFRKDFPVSGYVEMRYDPEEKRVVYQPVTI 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKE 195
                      P E    +  ++
Sbjct: 181 E----------PREITPRVIRED 193


>gi|91782614|ref|YP_557820.1| NADH dehydrogenase subunit C [Burkholderia xenovorans LB400]
 gi|122970576|sp|Q142H1|NUOC_BURXL RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|91686568|gb|ABE29768.1| NADH dehydrogenase subunit C [Burkholderia xenovorans LB400]
          Length = 200

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 83/203 (40%), Positives = 121/203 (59%), Gaps = 18/203 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  K+E L   +  +F G ++    ++GEL++ V  GD +++ + LRDD    F   +DL
Sbjct: 1   MASKLETLKANLEAAFGGLLQSTTEAIGELTIVVKAGDYLNVATRLRDDRSLGFEQCVDL 60

Query: 61  CGVDFLSR------SNRFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWF 112
           CGVD+ +         RF  V H LS + N RLR+++   +     +PS+V I+   +W+
Sbjct: 61  CGVDYQTYADGAYDGPRFAAVLHLLSVQNNWRLRLRVFAPDDEVPILPSVVEIWNSVNWY 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D+YGI FEGHPDLRRILTDYGF GHP RKDFPV+G+VE+ YD + K+VVY+PV +
Sbjct: 121 EREAFDLYGIVFEGHPDLRRILTDYGFIGHPFRKDFPVSGYVEMRYDPEEKRVVYQPVTI 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKE 195
                      P E    +  ++
Sbjct: 181 E----------PREITPRVIRED 193


>gi|171316305|ref|ZP_02905526.1| NADH (or F420H2) dehydrogenase, subunit C [Burkholderia ambifaria
           MEX-5]
 gi|171098531|gb|EDT43332.1| NADH (or F420H2) dehydrogenase, subunit C [Burkholderia ambifaria
           MEX-5]
          Length = 200

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 84/203 (41%), Positives = 115/203 (56%), Gaps = 18/203 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  KIE L   +  +    V     ++GEL+L V   D + +   LRDDP   F  +IDL
Sbjct: 1   MASKIEILKANLEAALGARVVSLTEAIGELTLVVKASDYLEVAKTLRDDPKLRFEQLIDL 60

Query: 61  CGVDFLSRS------NRFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWF 112
           CGVD+ +         RF  V   LS   N RLR+++   +     V S+V I+  A+W+
Sbjct: 61  CGVDYQTYGDGAYDGPRFAAVSQLLSVTNNWRLRLRVFAPDDDLPIVASLVDIWASANWY 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D+YG+ FEGHPDLRRILTDYGF GHP RKDFPV+G+VE+ YD + K+VVY+PV +
Sbjct: 121 EREAFDLYGLVFEGHPDLRRILTDYGFIGHPFRKDFPVSGYVEMRYDPEEKRVVYQPVTI 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKE 195
                      P E    +  ++
Sbjct: 181 E----------PREITPRVIRED 193


>gi|167836051|ref|ZP_02462934.1| NADH dehydrogenase subunit C [Burkholderia thailandensis MSMB43]
          Length = 200

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 87/203 (42%), Positives = 116/203 (57%), Gaps = 18/203 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  KIE L   +  +        V +VGEL+L V   D + +   LRDD    F  +IDL
Sbjct: 1   MASKIETLKANLEAALGARAVSLVEAVGELTLVVKASDYLEVAKQLRDDRSLGFEQLIDL 60

Query: 61  CGVDFLSRS------NRFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWF 112
           CG+D+ +         RF  V H LS   N RLRV++   +     VPS+V I+  A+W+
Sbjct: 61  CGIDYQTYGDGAYDGPRFAAVLHLLSVANNWRLRVRVFAPDDDLPIVPSVVDIWSSANWY 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D+YGI FEGHPDLRRILTDYGF GHP RKDFPV+G+VE+ YD + K+VVY+PV +
Sbjct: 121 EREAFDLYGIVFEGHPDLRRILTDYGFIGHPFRKDFPVSGYVEMRYDPEEKRVVYQPVTI 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKE 195
                      P E    +  ++
Sbjct: 181 E----------PREITPRVIRED 193


>gi|170698111|ref|ZP_02889191.1| NADH (or F420H2) dehydrogenase, subunit C [Burkholderia ambifaria
           IOP40-10]
 gi|172061207|ref|YP_001808859.1| NADH dehydrogenase subunit C [Burkholderia ambifaria MC40-6]
 gi|218534293|sp|B1YTQ5|NUOC_BURA4 RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|170136969|gb|EDT05217.1| NADH (or F420H2) dehydrogenase, subunit C [Burkholderia ambifaria
           IOP40-10]
 gi|171993724|gb|ACB64643.1| NADH (or F420H2) dehydrogenase, subunit C [Burkholderia ambifaria
           MC40-6]
          Length = 200

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 84/203 (41%), Positives = 115/203 (56%), Gaps = 18/203 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  KIE L   +  +    V     ++GEL+L V   D + +   LRDDP   F  +IDL
Sbjct: 1   MASKIEILKANLEAALGARVVSLTEAIGELTLVVKASDYLEVAKTLRDDPKLRFEQLIDL 60

Query: 61  CGVDFLSRS------NRFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWF 112
           CGVD+ +         RF  V   LS   N RLR+++   +     V S+V I+  A+W+
Sbjct: 61  CGVDYQTYGDGAYDGPRFAAVSQLLSVTNNWRLRLRVFAPDDDLPIVASLVDIWTSANWY 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D+YG+ FEGHPDLRRILTDYGF GHP RKDFPV+G+VE+ YD + K+VVY+PV +
Sbjct: 121 EREAFDLYGLVFEGHPDLRRILTDYGFIGHPFRKDFPVSGYVEMRYDPEEKRVVYQPVTI 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKE 195
                      P E    +  ++
Sbjct: 181 E----------PREITPRVIRED 193


>gi|224824821|ref|ZP_03697928.1| NADH (or F420H2) dehydrogenase, subunit C [Lutiella nitroferrum
           2002]
 gi|224603314|gb|EEG09490.1| NADH (or F420H2) dehydrogenase, subunit C [Lutiella nitroferrum
           2002]
          Length = 197

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 79/203 (38%), Positives = 115/203 (56%), Gaps = 18/203 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  K+E L   +       +  +  ++ EL++     ++V + S LRD     F  +IDL
Sbjct: 1   MASKMEALKSVVEQVLGDRLVQSTLALDELTIVCKAENIVEVASLLRDHAELSFEQLIDL 60

Query: 61  CGVDF------LSRSNRFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWF 112
           CGVD+           RF VV H LS K+N R+R+K    E     V S+VG++  A+WF
Sbjct: 61  CGVDYSSYKDQPWDGPRFAVVSHLLSLKHNWRIRLKTFAPEDDFPVVNSVVGVWNSANWF 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D++GI F+GHPDLRR+LTDYGF GHP RKDFP++G+VE+ YD   ++V+Y+PV +
Sbjct: 121 EREAFDLFGIVFDGHPDLRRLLTDYGFVGHPFRKDFPLSGYVEMRYDPTQQRVIYQPVTI 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKE 195
                      P E    +  +E
Sbjct: 181 E----------PREITPRIIREE 193


>gi|296160631|ref|ZP_06843446.1| NADH (or F420H2) dehydrogenase, subunit C [Burkholderia sp. Ch1-1]
 gi|295889157|gb|EFG68960.1| NADH (or F420H2) dehydrogenase, subunit C [Burkholderia sp. Ch1-1]
          Length = 200

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 83/203 (40%), Positives = 121/203 (59%), Gaps = 18/203 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  K+E L   +  +F G ++    ++GEL++ V  GD +++ + LRDD    F   +DL
Sbjct: 1   MASKLETLKANLEAAFGGLLQSTTEAIGELTIVVKAGDYLNVATRLRDDRSLGFEQCVDL 60

Query: 61  CGVDFLSR------SNRFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWF 112
           CGVD+ +         RF  V H LS + N RLR+++   +     +PS+V I+   +W+
Sbjct: 61  CGVDYQTYADGAYDGPRFAAVLHLLSVQNNWRLRLRVFAPDDEVPILPSVVEIWSSVNWY 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D+YGI FEGHPDLRRILTDYGF GHP RKDFPV+G+VE+ YD + K+VVY+PV +
Sbjct: 121 EREAFDLYGIVFEGHPDLRRILTDYGFIGHPFRKDFPVSGYVEMRYDPEEKRVVYQPVTI 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKE 195
                      P E    +  ++
Sbjct: 181 E----------PREITPRVIRED 193


>gi|53718849|ref|YP_107835.1| NADH dehydrogenase subunit C [Burkholderia pseudomallei K96243]
 gi|53725817|ref|YP_103432.1| NADH dehydrogenase subunit C [Burkholderia mallei ATCC 23344]
 gi|67642190|ref|ZP_00440950.1| NADH-quinone oxidoreductase chain c (nadh dehydrogenasei, chain c)
           (ndh-1, chain c) [Burkholderia mallei GB8 horse 4]
 gi|76809661|ref|YP_332846.1| NADH dehydrogenase subunit C [Burkholderia pseudomallei 1710b]
 gi|121600967|ref|YP_992471.1| NADH dehydrogenase subunit C [Burkholderia mallei SAVP1]
 gi|124384508|ref|YP_001026726.1| NADH dehydrogenase subunit C [Burkholderia mallei NCTC 10229]
 gi|126440556|ref|YP_001058340.1| NADH dehydrogenase subunit C [Burkholderia pseudomallei 668]
 gi|126451055|ref|YP_001079989.1| NADH dehydrogenase subunit C [Burkholderia mallei NCTC 10247]
 gi|126454408|ref|YP_001065579.1| NADH dehydrogenase subunit C [Burkholderia pseudomallei 1106a]
 gi|134283898|ref|ZP_01770594.1| NADH dehydrogenase I, C subunit [Burkholderia pseudomallei 305]
 gi|167000366|ref|ZP_02266184.1| NADH dehydrogenase I, C subunit [Burkholderia mallei PRL-20]
 gi|167718845|ref|ZP_02402081.1| NADH dehydrogenase subunit C [Burkholderia pseudomallei DM98]
 gi|167737854|ref|ZP_02410628.1| NADH dehydrogenase subunit C [Burkholderia pseudomallei 14]
 gi|167815038|ref|ZP_02446718.1| NADH dehydrogenase subunit C [Burkholderia pseudomallei 91]
 gi|167823454|ref|ZP_02454925.1| NADH dehydrogenase subunit C [Burkholderia pseudomallei 9]
 gi|167845006|ref|ZP_02470514.1| NADH dehydrogenase subunit C [Burkholderia pseudomallei B7210]
 gi|167893547|ref|ZP_02480949.1| NADH dehydrogenase subunit C [Burkholderia pseudomallei 7894]
 gi|167901993|ref|ZP_02489198.1| NADH dehydrogenase subunit C [Burkholderia pseudomallei NCTC 13177]
 gi|167910229|ref|ZP_02497320.1| NADH dehydrogenase subunit C [Burkholderia pseudomallei 112]
 gi|167918262|ref|ZP_02505353.1| NADH dehydrogenase subunit C [Burkholderia pseudomallei BCC215]
 gi|217420241|ref|ZP_03451747.1| NADH dehydrogenase I, C subunit [Burkholderia pseudomallei 576]
 gi|226195449|ref|ZP_03791038.1| NADH dehydrogenase I, C subunit [Burkholderia pseudomallei Pakistan
           9]
 gi|237811584|ref|YP_002896035.1| NADH dehydrogenase subunit C [Burkholderia pseudomallei MSHR346]
 gi|242316909|ref|ZP_04815925.1| NADH dehydrogenase I, C subunit [Burkholderia pseudomallei 1106b]
 gi|254175567|ref|ZP_04882227.1| NADH dehydrogenase I, C subunit [Burkholderia mallei ATCC 10399]
 gi|254181185|ref|ZP_04887782.1| NADH-quinone oxidoreductase, C subunit [Burkholderia pseudomallei
           1655]
 gi|254190548|ref|ZP_04897055.1| NADH-quinone oxidoreductase, C subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254195095|ref|ZP_04901524.1| NADH-quinone oxidoreductase, C subunit [Burkholderia pseudomallei
           S13]
 gi|254202108|ref|ZP_04908471.1| NADH dehydrogenase I, C subunit [Burkholderia mallei FMH]
 gi|254207438|ref|ZP_04913788.1| NADH dehydrogenase I, C subunit [Burkholderia mallei JHU]
 gi|254262053|ref|ZP_04953107.1| NADH-quinone oxidoreductase, C subunit [Burkholderia pseudomallei
           1710a]
 gi|254298535|ref|ZP_04965987.1| NADH-quinone oxidoreductase, C subunit [Burkholderia pseudomallei
           406e]
 gi|254359860|ref|ZP_04976130.1| NADH dehydrogenase I, C subunit [Burkholderia mallei 2002721280]
 gi|81380047|sp|Q63VN1|NUOC_BURPS RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|81604653|sp|Q62IN7|NUOC_BURMA RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|123599739|sp|Q3JUA7|NUOC_BURP1 RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|218534255|sp|A3MIA3|NUOC_BURM7 RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|218534268|sp|A3NTA8|NUOC_BURP0 RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|218534271|sp|A1V2L8|NUOC_BURMS RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|218534280|sp|A2S457|NUOC_BURM9 RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|218534296|sp|A3N7L9|NUOC_BURP6 RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|52209263|emb|CAH35208.1| NADH dehydrogenase I chain C [Burkholderia pseudomallei K96243]
 gi|52429240|gb|AAU49833.1| NADH dehydrogenase I, C subunit [Burkholderia mallei ATCC 23344]
 gi|76579114|gb|ABA48589.1| NADH dehydrogenase I chain C [Burkholderia pseudomallei 1710b]
 gi|121229777|gb|ABM52295.1| NADH dehydrogenase I, C subunit [Burkholderia mallei SAVP1]
 gi|124292528|gb|ABN01797.1| NADH dehydrogenase I, C subunit [Burkholderia mallei NCTC 10229]
 gi|126220049|gb|ABN83555.1| NADH dehydrogenase I, C subunit [Burkholderia pseudomallei 668]
 gi|126228050|gb|ABN91590.1| NADH dehydrogenase I, C subunit [Burkholderia pseudomallei 1106a]
 gi|126243925|gb|ABO07018.1| NADH dehydrogenase I, C subunit [Burkholderia mallei NCTC 10247]
 gi|134244687|gb|EBA44785.1| NADH dehydrogenase I, C subunit [Burkholderia pseudomallei 305]
 gi|147746355|gb|EDK53432.1| NADH dehydrogenase I, C subunit [Burkholderia mallei FMH]
 gi|147751332|gb|EDK58399.1| NADH dehydrogenase I, C subunit [Burkholderia mallei JHU]
 gi|148029100|gb|EDK87005.1| NADH dehydrogenase I, C subunit [Burkholderia mallei 2002721280]
 gi|157808081|gb|EDO85251.1| NADH-quinone oxidoreductase, C subunit [Burkholderia pseudomallei
           406e]
 gi|157938223|gb|EDO93893.1| NADH-quinone oxidoreductase, C subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160696611|gb|EDP86581.1| NADH dehydrogenase I, C subunit [Burkholderia mallei ATCC 10399]
 gi|169651843|gb|EDS84536.1| NADH-quinone oxidoreductase, C subunit [Burkholderia pseudomallei
           S13]
 gi|184211723|gb|EDU08766.1| NADH-quinone oxidoreductase, C subunit [Burkholderia pseudomallei
           1655]
 gi|217397545|gb|EEC37561.1| NADH dehydrogenase I, C subunit [Burkholderia pseudomallei 576]
 gi|225932651|gb|EEH28649.1| NADH dehydrogenase I, C subunit [Burkholderia pseudomallei Pakistan
           9]
 gi|237503483|gb|ACQ95801.1| NADH dehydrogenase subunit C [Burkholderia pseudomallei MSHR346]
 gi|238523286|gb|EEP86725.1| NADH-quinone oxidoreductase chain c (nadh dehydrogenasei, chain c)
           (ndh-1, chain c) [Burkholderia mallei GB8 horse 4]
 gi|242140148|gb|EES26550.1| NADH dehydrogenase I, C subunit [Burkholderia pseudomallei 1106b]
 gi|243063700|gb|EES45886.1| NADH dehydrogenase I, C subunit [Burkholderia mallei PRL-20]
 gi|254220742|gb|EET10126.1| NADH-quinone oxidoreductase, C subunit [Burkholderia pseudomallei
           1710a]
          Length = 200

 Score =  199 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 88/203 (43%), Positives = 117/203 (57%), Gaps = 18/203 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  KIE L   +  +        V +VGEL+L V   D + +   LRDD    F  +IDL
Sbjct: 1   MASKIETLKANLEAALGARAVSLVEAVGELTLVVKASDYLEVAKQLRDDRSLGFEQLIDL 60

Query: 61  CGVDFLSRS------NRFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWF 112
           CGVD+ +         RF  V H LS   N RLRV++  ++     VPS+V I+  A+W+
Sbjct: 61  CGVDYQTYGDGAYDGPRFAAVLHLLSVANNWRLRVRVFASDDDLPIVPSVVDIWNSANWY 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D+YGI FEGHPDLRRILTDYGF GHP RKDFPV+G+VE+ YD + K+VVY+PV +
Sbjct: 121 EREAFDLYGIVFEGHPDLRRILTDYGFIGHPFRKDFPVSGYVEMRYDPQEKRVVYQPVTI 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKE 195
                      P E    +  ++
Sbjct: 181 E----------PREITPRVIRED 193


>gi|17546779|ref|NP_520181.1| NADH dehydrogenase subunit C [Ralstonia solanacearum GMI1000]
 gi|81504308|sp|Q8XXQ3|NUOC_RALSO RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|17429079|emb|CAD15767.1| probable nadh dehydrogenaseI(chain c) oxidoreductase protein
           [Ralstonia solanacearum GMI1000]
          Length = 200

 Score =  199 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 79/204 (38%), Positives = 112/204 (54%), Gaps = 18/204 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  K+  L   +  +    ++    +VGE++L V   D +     LRDD    F  +IDL
Sbjct: 1   MTDKLATLQSALEKALGNRIQSLTEAVGEITLVVKAADYLETMRTLRDDATLKFEQLIDL 60

Query: 61  CGVDFL------SRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADWF 112
           CGVD+           RF  V H LS  +N R+RV++   +       S+V ++  ADWF
Sbjct: 61  CGVDYSAYGDGAWNGPRFAAVSHLLSVTHNWRVRVRVFAPDDDLPVVASVVDVWNAADWF 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D+YG+ FEGHPDLRRILTDYGF GHP RKDFPV+G+VE+ YD   ++V+Y+PV +
Sbjct: 121 EREAFDLYGLVFEGHPDLRRILTDYGFIGHPFRKDFPVSGYVEMRYDPVQRRVIYQPVTI 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKED 196
                      P E    +  ++ 
Sbjct: 181 E----------PREITPRVIREDQ 194


>gi|330817790|ref|YP_004361495.1| NADH dehydrogenase, subunit C [Burkholderia gladioli BSR3]
 gi|327370183|gb|AEA61539.1| NADH dehydrogenase, subunit C [Burkholderia gladioli BSR3]
          Length = 200

 Score =  199 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 81/203 (39%), Positives = 115/203 (56%), Gaps = 18/203 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  KIE L   +  +    V     ++GEL+L V   D V + + LRDD    F  +IDL
Sbjct: 1   MASKIETLKANLEAALGERVVSLTEAIGELTLVVRARDYVEVATQLRDDRKLGFEQLIDL 60

Query: 61  CGVDFLSRS------NRFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWF 112
           CGVD+ +         RF  V   LS   N RLR+++   +     + S+V ++  A+W+
Sbjct: 61  CGVDYQTYGDGAYDGPRFAAVLQLLSITNNWRLRLRVFAPDDDLPILASMVEVWSSANWY 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D++GI FEGHPDLRRILTDYGF GHP RKDFP++G+VE+ YD + K+VVY+PV +
Sbjct: 121 EREAFDLFGIVFEGHPDLRRILTDYGFIGHPFRKDFPLSGYVEMRYDPEEKRVVYQPVTI 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKE 195
                      P E    +  ++
Sbjct: 181 E----------PREITPRVIRED 193


>gi|145932432|ref|YP_001165343.1| NADH dehydrogenase subunit 9 [Phytophthora ramorum]
 gi|110169630|gb|ABG54095.1| NADH dehydrogenase subunit 9 [Phytophthora ramorum]
 gi|188037994|gb|ACD46612.1| NADH dehydrogenase subunit 9 [Phytophthora ramorum]
          Length = 188

 Score =  199 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 76/185 (41%), Positives = 124/185 (67%), Gaps = 2/185 (1%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           ++ ++    +++      +        EL +++    L+ +  F ++     F  + ++C
Sbjct: 1   MKLLKKFSQHLLQILP--IINYTLYKNELCINISRNKLIPVLFFFKNHTTSQFKVLSEIC 58

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD++++  RF+++Y+ LS ++N RL++KI V E + V SI+ IY  A+W EREVWDM+G
Sbjct: 59  AVDYINKKKRFEIIYNLLSIRFNTRLKIKITVNELQPVDSIIPIYKAANWCEREVWDMFG 118

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           IFF  HPDLRRILTDYGFEGHPLRKDFP++GF+E+ Y++  K+VVY P+ L Q++R ++F
Sbjct: 119 IFFLNHPDLRRILTDYGFEGHPLRKDFPLSGFLEVFYNELKKRVVYEPINLSQQYRLFEF 178

Query: 182 LSPWE 186
            +PW+
Sbjct: 179 NNPWD 183


>gi|294340859|emb|CAZ89254.1| putative NADH (or F420H2) dehydrogenase, subunit C (NuoC)
           [Thiomonas sp. 3As]
          Length = 209

 Score =  199 bits (505), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 89/203 (43%), Positives = 114/203 (56%), Gaps = 19/203 (9%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  K+E L   +  +    +     SVGEL+LDV       +C  LRDD    F  +IDL
Sbjct: 1   MTSKLEQLDTALRAALGERIVALQASVGELTLDVAPAHYRDVCLALRDDAELHFEQLIDL 60

Query: 61  CGVDFLSRSN-------RFDVVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADW 111
           CGVD+    N       RF VV H LS K+N RLRV++  A+       SI  I+  A+W
Sbjct: 61  CGVDYAQYGNAVRDEAGRFMVVVHLLSLKHNWRLRVRVRCADDDLPLVASINDIWNSANW 120

Query: 112 FEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVE 171
           FERE +D+YGI FEGHPDLRRILTDYGF GHP RKDFP++G VE+ YD   K+V+Y+PV 
Sbjct: 121 FEREAFDLYGIIFEGHPDLRRILTDYGFIGHPFRKDFPLSGTVEMRYDPDSKRVIYQPVT 180

Query: 172 LMQEHRDYDFLSPWEGVNSLFAK 194
           +           P E    +  +
Sbjct: 181 IE----------PREITPRVIRE 193


>gi|187923342|ref|YP_001894984.1| NADH dehydrogenase subunit C [Burkholderia phytofirmans PsJN]
 gi|218534258|sp|B2T2E9|NUOC_BURPP RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|187714536|gb|ACD15760.1| NADH (or F420H2) dehydrogenase, subunit C [Burkholderia
           phytofirmans PsJN]
          Length = 200

 Score =  198 bits (504), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 82/203 (40%), Positives = 119/203 (58%), Gaps = 18/203 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  K+E L   +  +F G +     ++GEL++ V   D +++ + LRDD    F   +DL
Sbjct: 1   MASKLETLKANLEAAFGGLLLNLSEAIGELTIVVKASDYLNVATRLRDDRSLGFEQCVDL 60

Query: 61  CGVDFLSR------SNRFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWF 112
           CGVD+ +         RF  V H LS + N RLR+++   +     +PS+V I+   +W+
Sbjct: 61  CGVDYQTYAEGAYDGPRFAAVLHLLSVQNNWRLRLRVFAPDDEVPILPSVVEIWNSVNWY 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D+YGI FEGHPDLRRILTDYGF GHP RKDFPV+G+VE+ YD + K+VVY+PV +
Sbjct: 121 EREAFDLYGIVFEGHPDLRRILTDYGFIGHPFRKDFPVSGYVEMRYDPEEKRVVYQPVTI 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKE 195
                      P E    +  ++
Sbjct: 181 E----------PREITPRVIRED 193


>gi|115352336|ref|YP_774175.1| NADH dehydrogenase subunit C [Burkholderia ambifaria AMMD]
 gi|122322643|sp|Q0BDD2|NUOC_BURCM RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|115282324|gb|ABI87841.1| NADH dehydrogenase subunit C [Burkholderia ambifaria AMMD]
          Length = 200

 Score =  198 bits (504), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 85/203 (41%), Positives = 116/203 (57%), Gaps = 18/203 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  KIE L   +  +    V     ++GEL+L V   D + +   LRDDP  CF  +IDL
Sbjct: 1   MASKIEILKANLEAALGARVVSLTEAIGELTLVVKASDYLEVAKTLRDDPKLCFEQLIDL 60

Query: 61  CGVDFLSRS------NRFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWF 112
           CGVD+ +         RF  V   LS   N RLR+++   +     V S+V I+  A+W+
Sbjct: 61  CGVDYQTYGDGAYDGPRFAAVSQLLSVTNNWRLRLRVFAPDDDLPIVASLVDIWTSANWY 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D+YG+ FEGHPDLRRILTDYGF GHP RKDFPV+G+VE+ YD + K+VVY+PV +
Sbjct: 121 EREAFDLYGLVFEGHPDLRRILTDYGFIGHPFRKDFPVSGYVEMRYDPEEKRVVYQPVTI 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKE 195
                      P E    +  ++
Sbjct: 181 E----------PREITPRVIRED 193


>gi|9695380|ref|NP_037602.1| NADH dehydrogenase subunit 9 [Phytophthora infestans]
 gi|6692633|gb|AAF24776.1|U17009_8 NADH dehydrogenase subunit 9 [Phytophthora infestans]
 gi|58012138|gb|AAW62546.1| NADH dehydrogenase subunit 9 [Phytophthora infestans]
 gi|58201977|gb|AAW67032.1| NADH dehydrogenase subunit 9 [Phytophthora infestans]
 gi|58202024|gb|AAW67078.1| NADH dehydrogenase subunit 9 [Phytophthora infestans]
          Length = 188

 Score =  198 bits (503), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 75/185 (40%), Positives = 125/185 (67%), Gaps = 2/185 (1%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           ++ ++    Y++      +        EL +++    L+ +  F ++  +  F  + ++C
Sbjct: 1   MKILKKFSQYLLQILP--IINYTLYKNELCINISSDKLIPILFFFKNHTNTQFKVLSEIC 58

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD++++  RF+++Y+ LS ++N RL++KI + E + + SI+ IY  A+W EREVWDM+G
Sbjct: 59  AVDYINKEKRFEIIYNLLSIRFNSRLKIKITINELQPINSIIKIYRAANWCEREVWDMFG 118

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           IFF  HPDLRRILTDYGFEGHPLRKDFP++GF+E+ Y++  K+VVY P+ L Q++R ++F
Sbjct: 119 IFFLNHPDLRRILTDYGFEGHPLRKDFPLSGFLEVFYNELKKRVVYEPINLSQQYRVFEF 178

Query: 182 LSPWE 186
            +PW+
Sbjct: 179 NNPWD 183


>gi|74317162|ref|YP_314902.1| NADH dehydrogenase subunit C [Thiobacillus denitrificans ATCC
           25259]
 gi|123611052|sp|Q3SEX6|NUOC_THIDA RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|74056657|gb|AAZ97097.1| NADH dehydrogenase I chain C [Thiobacillus denitrificans ATCC
           25259]
          Length = 200

 Score =  197 bits (502), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 78/181 (43%), Positives = 104/181 (57%), Gaps = 8/181 (4%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   +E L   + N+   ++   +  +GEL+L V           LRD P C F  +IDL
Sbjct: 1   MSITLESLSACLKNALGDALVQTIERLGELTLVVKPQAYAPAMLALRDHPDCRFEQLIDL 60

Query: 61  CGVDFLSRSNRFD------VVYHFLSPKYNRRLRVKIAVAEGKSVP--SIVGIYPGADWF 112
           CGVD+              VV H LS   N R+RV++   +       S+V I+P A WF
Sbjct: 61  CGVDYSGYGEGAWEGPRFAVVAHLLSVSKNARVRVRVFCPDDDLPAVASVVDIWPAASWF 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D+YGI FEGHPDLRRILTDYGF GHP RKDFP++G VE+ YD   ++V+Y+PV +
Sbjct: 121 EREAFDLYGIVFEGHPDLRRILTDYGFIGHPFRKDFPLSGNVEMRYDPTQQRVIYQPVSI 180

Query: 173 M 173
            
Sbjct: 181 E 181


>gi|50261313|ref|YP_052922.1| NADH dehydrogenase subunit 9 [Saprolegnia ferax]
 gi|48237626|gb|AAT40675.1| NADH dehydrogenase subunit 9 [Saprolegnia ferax]
          Length = 187

 Score =  197 bits (502), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 86/185 (46%), Positives = 129/185 (69%), Gaps = 3/185 (1%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M       G Y++ +    +     +  ELSL++    ++ +  FL+   +C +  I D+
Sbjct: 1   MTLN-TKYGQYLLKTLP--IINYTFNKKELSLNIPANKMIPIFFFLKYHTNCQYKVISDI 57

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
           C VD+L+R NRF+V+Y+ LS ++N R+R+KI + E +S+ SI  IY GA W+EREVWDM+
Sbjct: 58  CAVDYLNRLNRFEVIYNLLSIRFNTRIRIKIIINELQSIDSITNIYKGASWWEREVWDMF 117

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GIFF  HPDLRRILTDYGFEG+PLRKDFP++G++E++Y++  K+VVY P+ L Q++R ++
Sbjct: 118 GIFFINHPDLRRILTDYGFEGYPLRKDFPLSGYLEVYYNELKKRVVYEPIHLSQKYRLFE 177

Query: 181 FLSPW 185
           F SPW
Sbjct: 178 FNSPW 182


>gi|300691027|ref|YP_003752022.1| NADH-quinone oxidoreductase subunit C [Ralstonia solanacearum
           PSI07]
 gi|299078087|emb|CBJ50730.1| NADH-quinone oxidoreductase subunit C [Ralstonia solanacearum
           PSI07]
          Length = 200

 Score =  197 bits (502), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 80/204 (39%), Positives = 112/204 (54%), Gaps = 18/204 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  K+  L   +  +    ++    +VGE++L V   D +     LRDD    F  +IDL
Sbjct: 1   MTDKLATLKAALEKALGNRIQGLTEAVGEITLLVKAADYLETMRTLRDDVTLKFEQLIDL 60

Query: 61  CGVDFL------SRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADWF 112
           CGVD+           RF  V H LS  +N RLRV++   +       S+V I+  A+WF
Sbjct: 61  CGVDYSAYGDGAWNGPRFAAVSHLLSVTHNWRLRVRVFAPDDDLPVVASVVDIWDAANWF 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D+YG+ FEGHPDLRRILTDYGF GHP RKDFPV+G+VE+ YD   ++V+Y+PV +
Sbjct: 121 EREAFDLYGLVFEGHPDLRRILTDYGFIGHPFRKDFPVSGYVEMRYDPVQRRVIYQPVTI 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKED 196
                      P E    +  ++ 
Sbjct: 181 E----------PREITPRVIREDQ 194


>gi|145932338|ref|YP_001165386.1| NADH dehydrogenase subunit 9 [Phytophthora sojae]
 gi|110169581|gb|ABG54047.1| NADH dehydrogenase subunit 9 [Phytophthora sojae]
          Length = 188

 Score =  197 bits (502), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 126/185 (68%), Gaps = 2/185 (1%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           ++ ++    Y++      +        EL +++    L+ +  FL++  +C F  + ++C
Sbjct: 1   MKLLQKFSQYLLQILP--IINYTLYKNELCINIPTNKLIPILFFLKNHTNCQFKLLSEIC 58

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD++++  RF+++Y+ LS ++N RL+VKI + E + V SI+ IY  A+W EREVWDM+G
Sbjct: 59  AVDYINKEKRFEIIYNLLSIRFNSRLKVKIMINELQPVDSIIHIYKAANWCEREVWDMFG 118

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           IFF  H DLRRILTDYGFEGHPLRKDFP++GF+E+ Y++  K+VVY P+ L Q++R ++F
Sbjct: 119 IFFLNHNDLRRILTDYGFEGHPLRKDFPLSGFLEVFYNELKKRVVYEPINLSQQYRLFEF 178

Query: 182 LSPWE 186
            +PW+
Sbjct: 179 NNPWD 183


>gi|84508616|ref|YP_448663.1| NADH dehydrogenase subunit 9 [Desmarestia viridis]
 gi|45925648|gb|AAS79049.1| NADH dehydrogenase subunit 9 [Desmarestia viridis]
          Length = 191

 Score =  197 bits (502), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 79/192 (41%), Positives = 111/192 (57%), Gaps = 2/192 (1%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   +      +       V+       E+ + V    L++  +FL    +  F  +  +
Sbjct: 1   MSNSLIVYATSLTRLLP--VQTFQVFGHEIVISVPKKYLLATLTFLHHHSNGNFQMLTSI 58

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
            GVD+  R  RF+VVY  L+ + N RLRVK    E   +PS+V ++P A+W+ERE+WD++
Sbjct: 59  SGVDYPDREERFEVVYDLLNVRANCRLRVKTCTDEINPLPSVVSLFPSANWWEREIWDLF 118

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GIFF  HPDLRRILTDYGFEGHPLRKDFP++G+ EL YD+  + VV   +EL QE R ++
Sbjct: 119 GIFFSNHPDLRRILTDYGFEGHPLRKDFPLSGYFELRYDEDQRVVVCEAIELSQEFRSFN 178

Query: 181 FLSPWEGVNSLF 192
           F  PW   N   
Sbjct: 179 FHIPWSQNNKSI 190


>gi|67458957|ref|YP_246581.1| NADH dehydrogenase subunit C [Rickettsia felis URRWXCal2]
 gi|75536605|sp|Q4UM07|NUOC_RICFE RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|67004490|gb|AAY61416.1| NADH dehydrogenase I chain C [Rickettsia felis URRWXCal2]
          Length = 207

 Score =  197 bits (502), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 77/198 (38%), Positives = 123/198 (62%), Gaps = 1/198 (0%)

Query: 4   KIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGV 63
            ++ L + +    S  +   +     L+  V+   L+     L++     F  + DL G 
Sbjct: 2   TLDKLIEKLAAK-SSILITPIIVKDYLAYQVEPNFLLPFLKALKESEELRFTVLTDLFGT 60

Query: 64  DFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIF 123
           DF  R  RF+V+Y+ LS K N+RL +K+ ++E +++PS + I+  + W+EREV+DMYG+ 
Sbjct: 61  DFPERDKRFEVIYNLLSLKLNKRLIIKVYISEKETIPSAMNIFNASCWYEREVYDMYGVN 120

Query: 124 FEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLS 183
           F+G+ D RRILTDY FEGHPLRKDFP+TG+ ++ YD+K+KKV Y PV+L  E+R++DF S
Sbjct: 121 FDGNDDKRRILTDYEFEGHPLRKDFPLTGYTQVKYDEKLKKVAYEPVDLDIEYREFDFSS 180

Query: 184 PWEGVNSLFAKEDSKDDM 201
            W   + +   ++   D+
Sbjct: 181 HWHSPSYVLPGDEKATDV 198


>gi|73540666|ref|YP_295186.1| NADH dehydrogenase subunit C [Ralstonia eutropha JMP134]
 gi|123625483|sp|Q473U1|NUOC_RALEJ RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|72118079|gb|AAZ60342.1| NADH (or F420H2) dehydrogenase, subunit C [Ralstonia eutropha
           JMP134]
          Length = 199

 Score =  197 bits (502), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 80/203 (39%), Positives = 115/203 (56%), Gaps = 18/203 (8%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           + K+E L   +       V+  + + GEL+L V   D + +   LRDDP   F  +IDLC
Sbjct: 1   MAKLETLKAALEKVLGKRVQKLIEATGELTLIVKADDYLEVARTLRDDPSLRFEQLIDLC 60

Query: 62  GVDFLSRSNRFD------VVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWFE 113
           GVD+    +          V H LS  +N RLR+++   +     VPS++ ++   +WFE
Sbjct: 61  GVDYSDFGDGAWDGLRFAAVSHLLSVTHNWRLRLRVFAPDDDFPVVPSLIDVWNSVNWFE 120

Query: 114 REVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELM 173
           RE +D YGI FEGHPDLRR+LTDYGF GHP RKDFPV+G+VE+ YD + K+V+Y+PV + 
Sbjct: 121 REAFDFYGIVFEGHPDLRRLLTDYGFVGHPFRKDFPVSGYVEMRYDPEQKRVIYQPVTIE 180

Query: 174 QEHRDYDFLSPWEGVNSLFAKED 196
                     P E    +  +E+
Sbjct: 181 ----------PREITPRVIREEN 193


>gi|47214471|emb|CAG12476.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 325

 Score =  197 bits (502), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 89/270 (32%), Positives = 127/270 (47%), Gaps = 74/270 (27%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
            ++   G+Y+       V+    +   EL + +    ++ + +FLRD  +  F N+IDL 
Sbjct: 52  NQLAAFGEYVSEMMPKYVQQVQVTCYNELEVMIHPDGVIPVLTFLRDHTNAQFRNMIDLT 111

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREV----- 116
            VD  +R NRF++VY+ LS ++N R+RVK    E   V S V ++  A+W+EREV     
Sbjct: 112 AVDIPTRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPVDSAVPVHIAANWYEREVSVGPR 171

Query: 117 --------------------WDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVE- 155
                               WDM+G+FF  HPDLRRILTDYGFEGHP RKDFP++G+VE 
Sbjct: 172 VRRRDGVCEDAGDRNLRVQVWDMFGVFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVEV 231

Query: 156 -------------------------------------------LHYDDKVKKVVYRPVEL 172
                                                      + YDD+VK+VV  PVEL
Sbjct: 232 SSLLPVRTVLRISFMTVADVGWSLKSALLFRFPVLKALLLLPQVRYDDEVKRVVAEPVEL 291

Query: 173 MQEHRDYDFLSPWEGVNSLFAKEDSKDDMS 202
            QE R +D  +PWE    +F       + +
Sbjct: 292 SQEFRKFDLNTPWE----VFPAHREAKEAT 317


>gi|296136704|ref|YP_003643946.1| NADH (or F420H2) dehydrogenase, subunit C [Thiomonas intermedia
           K12]
 gi|295796826|gb|ADG31616.1| NADH (or F420H2) dehydrogenase, subunit C [Thiomonas intermedia
           K12]
          Length = 209

 Score =  197 bits (501), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 90/203 (44%), Positives = 115/203 (56%), Gaps = 19/203 (9%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  K+E L   +  +    +     SVGEL+LDV       +C  LRDD    F  +IDL
Sbjct: 1   MTSKLEQLDTALRAALGERIVALQASVGELTLDVAPAHYRDVCLALRDDAELHFEQLIDL 60

Query: 61  CGVDFLSRSN-------RFDVVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADW 111
           CGVD+    N       RF VV H LS K+NRRLRV++  A+       SI  I+  A+W
Sbjct: 61  CGVDYAQYGNAVRDEAGRFMVVLHLLSLKHNRRLRVRVRCADDDLPLVASINDIWNSANW 120

Query: 112 FEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVE 171
           FERE +D+YGI FEGHPDLRRILTDYGF GHP RKDFP++G VE+ YD   K+V+Y+PV 
Sbjct: 121 FEREAFDLYGIIFEGHPDLRRILTDYGFIGHPFRKDFPLSGTVEMRYDPDSKRVIYQPVT 180

Query: 172 LMQEHRDYDFLSPWEGVNSLFAK 194
           +           P E    +  +
Sbjct: 181 IE----------PREITPRVIRE 193


>gi|84508538|ref|YP_448702.1| NADH dehydrogenase subunit 9 [Dictyota dichotoma]
 gi|45925706|gb|AAS79087.1| NADH dehydrogenase subunit 9 [Dictyota dichotoma]
          Length = 192

 Score =  197 bits (501), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 80/183 (43%), Positives = 111/183 (60%), Gaps = 2/183 (1%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
             I    + +       ++    +  E+ + V    L+ +  FL    +  F  +  + G
Sbjct: 7   NSIVAYANKLTKLLP--IQTYKVNGQEMVISVSKEHLLVVLIFLHHHTNGGFQLLTCVSG 64

Query: 63  VDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGI 122
           VD+  R NRF++VY  LS  YN R+RVK    E   V S V ++P A+W+ERE+WD++G+
Sbjct: 65  VDYPERENRFEIVYELLSLGYNCRIRVKTYTNEVNPVFSCVSLFPCANWWEREIWDLFGV 124

Query: 123 FFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFL 182
           FF  HPDLRRILTDYGFEGHPLRKDFP++GFVEL YD+  + VV  P+EL QE R + F 
Sbjct: 125 FFFTHPDLRRILTDYGFEGHPLRKDFPLSGFVELRYDEDQRVVVCEPIELSQEFRMFSFS 184

Query: 183 SPW 185
           +PW
Sbjct: 185 TPW 187


>gi|299830460|ref|YP_003734831.1| NADH dehydrogenase subunit 9 [Pythium ultimum]
 gi|299830479|ref|YP_003734850.1| NADH dehydrogenase subunit 9 [Pythium ultimum]
 gi|269810837|gb|ACZ43866.1| NADH dehydrogenase subunit 9 [Pythium ultimum]
 gi|269810856|gb|ACZ43885.1| NADH dehydrogenase subunit 9 [Pythium ultimum]
 gi|269812150|gb|ACZ44448.1| NADH dehydrogenase subunit 9 [Pythium ultimum]
 gi|269812169|gb|ACZ44467.1| NADH dehydrogenase subunit 9 [Pythium ultimum]
          Length = 187

 Score =  197 bits (501), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 79/184 (42%), Positives = 125/184 (67%), Gaps = 2/184 (1%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           ++  +    Y++      +        ELS+++    +V +  FL++  +  F  + D+C
Sbjct: 1   MKLTQKFSQYLLQILP--IINYTTYKNELSINIPFNKMVPIFFFLKNHTNTQFKVLSDIC 58

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD++++  RF+++Y+ LS ++N RL+VKI + E + V SI+ IY  A+W ERE WDM+G
Sbjct: 59  VVDYINKKKRFEIIYNLLSIRFNSRLKVKILINELQPVDSIISIYKTANWCEREAWDMFG 118

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           IFF  HPDLRRILTDYGFEGHPLRKDFP++G++E++Y++  K+VVY P+ L Q++R ++F
Sbjct: 119 IFFINHPDLRRILTDYGFEGHPLRKDFPLSGYLEVYYNELKKRVVYEPINLSQQYRLFEF 178

Query: 182 LSPW 185
            SPW
Sbjct: 179 NSPW 182


>gi|7545239|gb|AAA32025.2| NADH dehydrogenase [Phytophthora megasperma]
          Length = 188

 Score =  197 bits (501), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 125/185 (67%), Gaps = 2/185 (1%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           ++ +     Y++      +        EL +++    L+ +  FL++  +  F  + ++C
Sbjct: 1   MKLLTKFSQYLLQILP--IINYTLYKNELCINIPTKKLIPILFFLKNHTNSQFKILSEIC 58

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD++++  RF+++Y+ LS ++N RL+VKI + E + V SI+ IY  A+W EREVWDM+G
Sbjct: 59  AVDYINKEKRFEIIYNLLSIRFNSRLKVKITINEVQPVDSIINIYKAANWCEREVWDMFG 118

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           IFF  HPDLRRILTDYGFEGHPLRKDFP++GF+E+ Y++  K+VVY P+ L Q++R ++F
Sbjct: 119 IFFSNHPDLRRILTDYGFEGHPLRKDFPLSGFLEVFYNELKKRVVYEPINLSQQYRLFEF 178

Query: 182 LSPWE 186
            +PW+
Sbjct: 179 NNPWD 183


>gi|194289161|ref|YP_002005068.1| NADH dehydrogenase subunit c [Cupriavidus taiwanensis LMG 19424]
 gi|218534267|sp|B3R3W9|NUOC_CUPTR RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|193222996|emb|CAQ69001.1| NADH:ubiquinone oxidoreductase complex I, chain C [Cupriavidus
           taiwanensis LMG 19424]
          Length = 199

 Score =  197 bits (501), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 81/203 (39%), Positives = 115/203 (56%), Gaps = 18/203 (8%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           + K++ L   +  +    V+  V + GEL+L V   D + +   LRDDP   F  +IDLC
Sbjct: 1   MAKLDTLKAALEKALGKRVQNLVEATGELTLIVKADDYLDVAQILRDDPSLRFEQLIDLC 60

Query: 62  GVDFLSR------SNRFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWFE 113
           GVD+L          RF  V   LS  +N RLR++   ++     +PS++ ++   +WFE
Sbjct: 61  GVDYLEYADGAWDGPRFAAVSQLLSVTHNWRLRLRAFASDDDFPVLPSLINVWNSVNWFE 120

Query: 114 REVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELM 173
           RE +D YGI F+GHPDLRRILTDYGF GHP RKDFPV+GFVE+ YD   K+V+Y+PV + 
Sbjct: 121 REAFDFYGIVFDGHPDLRRILTDYGFVGHPFRKDFPVSGFVEMRYDPDQKRVIYQPVTIE 180

Query: 174 QEHRDYDFLSPWEGVNSLFAKED 196
                     P E    +  ++ 
Sbjct: 181 ----------PRELTPRVIREDK 193


>gi|299507926|emb|CBN88264.1| NADH dehydrogenase subunit 9 [Asplenium nidus]
          Length = 226

 Score =  197 bits (500), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 88/185 (47%), Positives = 115/185 (62%), Gaps = 2/185 (1%)

Query: 5   IEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD 64
           +E     IV      +     S  E  L      L  L  FLR   +  F  +ID+CGVD
Sbjct: 6   LEQFA--IVPLVPKRIHRFRTSKKENILCATPDYLFQLPWFLRCHTNTRFGILIDICGVD 63

Query: 65  FLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFF 124
           + S+  RF VVY+ LS +YN R+R++I V E   V S++ I+P A W+EREVWDM+G+ F
Sbjct: 64  YPSQKRRFGVVYNLLSIQYNSRIRIRIGVDEITPVSSVISIFPSAGWWEREVWDMFGLIF 123

Query: 125 EGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSP 184
             H DLRRILTDYGFEGHPLRKDFP++G+ E+ YDD  K+VV  PVE+ QE R +D  SP
Sbjct: 124 SHHHDLRRILTDYGFEGHPLRKDFPLSGYAEVRYDDSEKRVVSEPVEMTQEFRYFDLASP 183

Query: 185 WEGVN 189
           W+ + 
Sbjct: 184 WQLMP 188


>gi|186920123|ref|YP_001874777.1| NADH dehydrogenase subunit 9 [Hemiselmis andersenii]
 gi|186461069|gb|ACC78231.1| NADH dehydrogenase subunit 9 [Hemiselmis andersenii]
          Length = 186

 Score =  197 bits (500), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 80/172 (46%), Positives = 109/172 (63%)

Query: 14  NSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFD 73
                SV     + GE+ ++V+   L  + +FL+   +C +  ++D+  +D      RF 
Sbjct: 11  KILKYSVICIYYNFGEVVIEVEYNKLKKVIAFLKGHENCLYKLLVDIVVIDCPENPLRFK 70

Query: 74  VVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRI 133
           +VY   S KYN R++V   V E   V SI  +Y  A W ERE WDMYGI+FEGHPDLRRI
Sbjct: 71  IVYLLCSVKYNLRIKVVTRVDEITPVSSITDLYKNAGWMEREGWDMYGIYFEGHPDLRRI 130

Query: 134 LTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPW 185
           LTDYGFEG+PLRKDFP++G+ E+ YDD  K+V++ P+E+ QE R Y F SPW
Sbjct: 131 LTDYGFEGYPLRKDFPLSGYKEVRYDDSQKRVIFEPLEMSQEFRIYQFTSPW 182


>gi|113867072|ref|YP_725561.1| NADH dehydrogenase subunit C [Ralstonia eutropha H16]
 gi|123329441|sp|Q0KCS8|NUOC_RALEH RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|113525848|emb|CAJ92193.1| NADH dehydrogenase chain C [Ralstonia eutropha H16]
          Length = 198

 Score =  197 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 79/203 (38%), Positives = 116/203 (57%), Gaps = 18/203 (8%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           + K++ L   +  +    V+  + + GEL+L V   D + +   LRDDP   F  +IDLC
Sbjct: 1   MAKLDILKAALEKALGKRVQNLIEATGELTLIVKADDYLEVARILRDDPSLRFEQLIDLC 60

Query: 62  GVDFLSRSNRFD------VVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWFE 113
           GVD+    +          V   LS  +N RLRV++   +     +PS++ ++ G +WFE
Sbjct: 61  GVDYSEYGDGAWDGLRFAAVSQLLSITHNWRLRVRVFAPDDDFPVLPSLIDVWNGVNWFE 120

Query: 114 REVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELM 173
           RE +D YGI F+GHPDLRRILTDYGF GHP RKDFPV+GFVE+ YD + K+V+Y+PV + 
Sbjct: 121 REAFDFYGIVFDGHPDLRRILTDYGFVGHPFRKDFPVSGFVEMRYDPEQKRVIYQPVTIE 180

Query: 174 QEHRDYDFLSPWEGVNSLFAKED 196
                     P E    +  +++
Sbjct: 181 ----------PREITPRVIREDN 193


>gi|307730338|ref|YP_003907562.1| NADH (or F420H2) dehydrogenase subunit C [Burkholderia sp.
           CCGE1003]
 gi|307584873|gb|ADN58271.1| NADH (or F420H2) dehydrogenase, subunit C [Burkholderia sp.
           CCGE1003]
          Length = 200

 Score =  196 bits (499), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 83/203 (40%), Positives = 119/203 (58%), Gaps = 18/203 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  K E L   +  +F G +     ++GEL++ V   D +++ + LRDD    F  ++DL
Sbjct: 1   MASKFETLKANLEAAFGGLLLSTTEAIGELTIVVKASDYLNVATRLRDDRSLGFDQMMDL 60

Query: 61  CGVDFLSR------SNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADWF 112
           CGVD+ +         RF  V H LS + N RLR+++   +      PS+V I+  A+W+
Sbjct: 61  CGVDYQTYADGAYDGPRFAAVLHLLSVQNNWRLRLRVFAPDDDLPLLPSVVDIWNSANWY 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D+YGI FEGHPDLRRILTDYGF GHP RKDFPV+G+VE+ YD + K+VVY+PV +
Sbjct: 121 EREAFDLYGIVFEGHPDLRRILTDYGFIGHPFRKDFPVSGYVEMRYDPEEKRVVYQPVTI 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKE 195
                      P E    +  ++
Sbjct: 181 E----------PREITPRVIRED 193


>gi|239811626|gb|ACS27113.1| NADH dehydrogenase subunit 9 [Heterosigma akashiwo]
 gi|239811666|gb|ACS27152.1| NADH dehydrogenase subunit 9 [Heterosigma akashiwo]
 gi|288871923|dbj|BAI70609.1| NADH dehydrogenase subunit 9 [Heterosigma akashiwo]
          Length = 188

 Score =  196 bits (499), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 76/186 (40%), Positives = 114/186 (61%), Gaps = 3/186 (1%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M + I +    + +     V        E+ + V    L+    FL+      +  +  +
Sbjct: 1   MNQIIFNFAFSLQSLIP--VENIKVFKNEIIVVVSSQFLLETVEFLKLHTQTQYKILTSI 58

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
            GVD+   + RF+VVY FL+  YN R+RVK  V E   +PS++ ++P A+W+EREVWD++
Sbjct: 59  SGVDYPEYNKRFEVVYDFLTLVYNGRIRVKTYVDEVTPLPSLIPLFPCANWWEREVWDLF 118

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVE-LMQEHRDY 179
           G+FF  H DLRRILTDYGFEGHP+RK+FP++G+VE+ YD+  K+VV  P++   QE R +
Sbjct: 119 GVFFSNHTDLRRILTDYGFEGHPMRKNFPLSGYVEVRYDENQKRVVCEPIKQFSQEFRSF 178

Query: 180 DFLSPW 185
           +F SPW
Sbjct: 179 NFSSPW 184


>gi|15150743|ref|NP_150409.1| NADH dehydrogenase subunit 9 [Pylaiella littoralis]
 gi|15147749|emb|CAC50850.1| NADH dehydrogenase subunit 9 [Pylaiella littoralis]
          Length = 190

 Score =  196 bits (499), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 79/185 (42%), Positives = 109/185 (58%), Gaps = 2/185 (1%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M+  +      +       V+       E+ + V    L+   +FL    +  F  +  +
Sbjct: 1   MLSSLVVYAKSLTRLLP--VQTFQVFGHEIVISVSKNHLLGTLTFLHHHSNGNFQMLTSI 58

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
            GVDF  R  RF+VVY  L+ + N RLRV+    E   +PSI  ++P A+W+ERE+WD++
Sbjct: 59  SGVDFPEREERFEVVYDLLNVRSNSRLRVRTHTDEINPLPSITSLFPSANWWEREIWDLF 118

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           G+FF  HPDLRRILTDYGFEGHPLRKDFP++G+ EL YD+  K VV   +EL QE R +D
Sbjct: 119 GVFFSNHPDLRRILTDYGFEGHPLRKDFPLSGYFELRYDEDQKVVVCESIELSQEFRTFD 178

Query: 181 FLSPW 185
           F  PW
Sbjct: 179 FHMPW 183


>gi|171058187|ref|YP_001790536.1| NADH (or F420H2) dehydrogenase subunit C [Leptothrix cholodnii
           SP-6]
 gi|218534295|sp|B1Y829|NUOC_LEPCP RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|170775632|gb|ACB33771.1| NADH (or F420H2) dehydrogenase, subunit C [Leptothrix cholodnii
           SP-6]
          Length = 199

 Score =  196 bits (498), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 82/204 (40%), Positives = 115/204 (56%), Gaps = 18/204 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M +K++ L   I       +   V   GEL+L V   D  ++   LRD P   F  +ID+
Sbjct: 1   MTQKLDTLQAAIERVIGDRIVHLVRDRGELTLTVKATDYAAIGKTLRDHPDLGFEQLIDI 60

Query: 61  CGVDFLSRSN------RFDVVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADWF 112
           CGVD+    +      R+  V H LS ++N RLR+K+   +       S+  I+ GA+WF
Sbjct: 61  CGVDYSGYKDGGYEGLRYAAVSHLLSVQHNWRLRLKVFAPDDDFPLVASLTPIWSGANWF 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +DMYGI F+GH DLRRILTDYGF GHP+RKDFPVTG VE+ YD + K+V+Y+PV +
Sbjct: 121 EREAFDMYGIVFDGHTDLRRILTDYGFIGHPMRKDFPVTGHVEMRYDPEQKRVIYQPVSI 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKED 196
                      P E    +  +++
Sbjct: 181 E----------PREITPRIIREDN 194


>gi|319738243|emb|CBJ18019.1| NADH dehydrogenase subunit 9 [Ectocarpus siliculosus]
          Length = 190

 Score =  196 bits (498), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 76/187 (40%), Positives = 113/187 (60%), Gaps = 2/187 (1%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M R +      +       V+       E+ + V    L++  +FL    +  F  +  +
Sbjct: 1   MFRSLIVYAKSLTRLLP--VQTFQVFGHEIVISVAKKHLLATLTFLHHHSNGNFQMLTSI 58

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
            GVD+  R  RF++VY  L+ + N R+R+K    E   +PS+V ++P A+W+ERE+WD++
Sbjct: 59  SGVDYPEREERFEIVYDLLNVRCNSRIRIKTHTDEVNPLPSVVSLFPSANWWEREIWDLF 118

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           G+FF  HPDLRRILTDYGFEGHPLRKDFP++G++EL YD+  + VV  P+EL QE R ++
Sbjct: 119 GVFFSNHPDLRRILTDYGFEGHPLRKDFPLSGYLELRYDEDQRVVVCEPIELSQEFRSFN 178

Query: 181 FLSPWEG 187
           F  PW  
Sbjct: 179 FHIPWSQ 185


>gi|34496398|ref|NP_900613.1| NADH dehydrogenase subunit C [Chromobacterium violaceum ATCC 12472]
 gi|81656635|sp|Q7NZH9|NUOC_CHRVO RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|34102251|gb|AAQ58617.1| NADH-ubiquinone oxidoreductase, chain C [Chromobacterium violaceum
           ATCC 12472]
          Length = 198

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 78/203 (38%), Positives = 117/203 (57%), Gaps = 18/203 (8%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
            +K+E LG  +  +    +  +  ++ EL++     DL+S+   LRD     F   ID+C
Sbjct: 3   SKKMEALGSVVAEALGDKLVRSTLALDELTIVCKASDLLSVAQTLRDHADLAFEQCIDVC 62

Query: 62  GVDF------LSRSNRFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWFE 113
           G+D+           RF  VYH LS K N R+R+++   +     +PS+ GI+  A+WFE
Sbjct: 63  GMDYSAYRDEPWDGPRFAAVYHLLSVKLNHRIRLRVFAEDDDFPVIPSVNGIWNAANWFE 122

Query: 114 REVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELM 173
           RE +D+YGI FEGHPDLRR+LTDYGF GHP RKDFP++G+VE+ YD   ++V+Y+PV + 
Sbjct: 123 REAFDLYGIVFEGHPDLRRLLTDYGFVGHPFRKDFPLSGYVEMRYDPTQQRVIYQPVTIE 182

Query: 174 QEHRDYDFLSPWEGVNSLFAKED 196
                     P E    +  +E+
Sbjct: 183 ----------PREITPRIIREEN 195


>gi|332526749|ref|ZP_08402851.1| NADH dehydrogenase (quinone) [Rubrivivax benzoatilyticus JA2]
 gi|332111152|gb|EGJ11184.1| NADH dehydrogenase (quinone) [Rubrivivax benzoatilyticus JA2]
          Length = 199

 Score =  195 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 80/204 (39%), Positives = 120/204 (58%), Gaps = 18/204 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  +++ L   + ++ +G +R +V ++GE+++ V   D + +   LRD P   F  ++DL
Sbjct: 1   MSIRLDLLQSALESALAGKIRTSVRALGEITITVGAADYLDVARTLRDTPELRFEQLVDL 60

Query: 61  CGVDF------LSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADWF 112
           CGVD+           RF VV H LS  +N RLR+K+   +       S+  I+  A+WF
Sbjct: 61  CGVDYSDYRNQPWDGPRFCVVSHLLSVTHNWRLRLKVFCPDDDLPVVASVNDIWGSANWF 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D+YGI FEGH DLRRILTDYGF GHP+RKDFP TG VE+ YD + K+V+Y+PV +
Sbjct: 121 EREAFDLYGIVFEGHLDLRRILTDYGFIGHPMRKDFPTTGNVEMRYDPEKKRVIYQPVTI 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKED 196
                      P E +  +  +++
Sbjct: 181 E----------PREIIPRVVREDN 194


>gi|84508576|ref|YP_448624.1| NADH dehydrogenase subunit 9 [Fucus vesiculosus]
 gi|39653299|gb|AAR29318.1| NADH dehydrogenase subunit 9 [Fucus vesiculosus]
          Length = 191

 Score =  195 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 78/187 (41%), Positives = 113/187 (60%), Gaps = 2/187 (1%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M R +      +       V+       E+ ++V    L++   FL    +  +  +  +
Sbjct: 1   MFRSLIVYATSLTRLLP--VQTFQVFGHEIVINVSKKYLLATLMFLHHHSNSNYQLLTSI 58

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
            GVD+  R  RF++VY  L+ + N R+R+K    E   +PS+V IYP A+W+ERE+WD++
Sbjct: 59  SGVDYPERDERFEIVYDLLNIRSNSRIRIKTQTDEINPLPSVVSIYPSANWWEREIWDLF 118

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           G+FF GHPDLRR+LTDYGFEGHPLRKDFP++G+ EL YD+  + VV  P+EL QE R +D
Sbjct: 119 GVFFSGHPDLRRLLTDYGFEGHPLRKDFPLSGYFELRYDEDQRVVVCEPIELTQEFRTFD 178

Query: 181 FLSPWEG 187
           F  PW  
Sbjct: 179 FHIPWSQ 185


>gi|94309874|ref|YP_583084.1| NADH dehydrogenase subunit C [Cupriavidus metallidurans CH34]
 gi|218534311|sp|Q1LPW1|NUOC_RALME RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|93353726|gb|ABF07815.1| NADH dehydrogenase chain C [Cupriavidus metallidurans CH34]
          Length = 199

 Score =  195 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 76/203 (37%), Positives = 113/203 (55%), Gaps = 18/203 (8%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +  ++ L   +       V+  + + GEL+L V   D + +   LRDDP   F  ++DLC
Sbjct: 1   MANLDTLKAALEKVLGKRVQNLIEATGELTLIVKAADYLEVARLLRDDPSLRFEQLLDLC 60

Query: 62  GVDFLSRSNRFD------VVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWFE 113
           GVD+   +           V   LS  +N RLR+++   +     +PS++ ++   +WFE
Sbjct: 61  GVDYSDYAEGAWDGLRFAAVSQLLSVTHNWRLRLRVFAPDDDFPVLPSVINVWNSVNWFE 120

Query: 114 REVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELM 173
           RE +D YGI FEGHPDLRRILTDYGF GHP RKDFPV+G+VE+ YD + K+V+Y+PV + 
Sbjct: 121 REAFDFYGIVFEGHPDLRRILTDYGFVGHPFRKDFPVSGYVEMRYDPEQKRVIYQPVTIE 180

Query: 174 QEHRDYDFLSPWEGVNSLFAKED 196
                     P E    +  +E+
Sbjct: 181 ----------PREVTPRVIREEN 193


>gi|56416678|ref|YP_153752.1| NADH-ubiquinone oxidoreductase subunit [Anaplasma marginale str.
           St. Maries]
 gi|222475043|ref|YP_002563458.1| NADH-ubiquinone oxidoreductase subunit (nuoC1) [Anaplasma marginale
           str. Florida]
 gi|254994890|ref|ZP_05277080.1| NADH-ubiquinone oxidoreductase subunit (nuoC1) [Anaplasma marginale
           str. Mississippi]
 gi|255003023|ref|ZP_05277987.1| NADH-ubiquinone oxidoreductase subunit (nuoC1) [Anaplasma marginale
           str. Puerto Rico]
 gi|255004146|ref|ZP_05278947.1| NADH-ubiquinone oxidoreductase subunit (nuoC1) [Anaplasma marginale
           str. Virginia]
 gi|56387910|gb|AAV86497.1| NADH-ubiquinone oxidoreductase subunit [Anaplasma marginale str.
           St. Maries]
 gi|222419179|gb|ACM49202.1| NADH-ubiquinone oxidoreductase subunit (nuoC1) [Anaplasma marginale
           str. Florida]
          Length = 187

 Score =  195 bits (496), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 89/187 (47%), Positives = 124/187 (66%), Gaps = 2/187 (1%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M + +E +  ++       V  AV S G L   ++ GDL+   + LRDD    F  + D+
Sbjct: 1   MQQSVEHVTKHVGKILKREV--AVRSDGVLECRLEAGDLLKCITTLRDDEKSKFKILTDI 58

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
             VD+ +R  RFDVVY  LS  +N R+  K+ + EG +VPS+  ++  A WFEREV+DMY
Sbjct: 59  FAVDYQAREARFDVVYMLLSVAFNARICCKVPLVEGHNVPSVTSVFGSAGWFEREVFDMY 118

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI F+GHPDLRRILTDYGF GHP+ KDFP+TG+ E+ YD + K+VVY+PV L Q+ R++D
Sbjct: 119 GIVFDGHPDLRRILTDYGFTGHPMLKDFPLTGYDEVRYDLQKKQVVYQPVNLQQDFRNFD 178

Query: 181 FLSPWEG 187
            +SPW+G
Sbjct: 179 AISPWKG 185


>gi|269958903|ref|YP_003328692.1| NADH dehydrogenase subunit C [Anaplasma centrale str. Israel]
 gi|269848734|gb|ACZ49378.1| NADH dehydrogenase subunit C [Anaplasma centrale str. Israel]
          Length = 187

 Score =  195 bits (495), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 83/180 (46%), Positives = 118/180 (65%), Gaps = 2/180 (1%)

Query: 10  DYIVNSFSGSVRFAVNSVGELSLDV--DCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLS 67
            ++       ++  V    +  L+   + GDL+   + LRDD    F  + D+  VD+ +
Sbjct: 6   KHVTERVGKILKREVAVRDDGVLECRLEAGDLLKCITTLRDDEKSKFRILTDIFAVDYQA 65

Query: 68  RSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGH 127
           R  RFDVVY  LS  +N R+  K+ + EG +VPS+  ++  A WFEREV+DMYGI F+GH
Sbjct: 66  REARFDVVYMLLSVAFNARICCKVPLVEGHNVPSVTSVFGAAGWFEREVFDMYGIVFDGH 125

Query: 128 PDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           PDLRRILTDYGF GHP+ KDFP+TG+ E+ YD + K+VVY+PV L Q+ R++D +SPW+G
Sbjct: 126 PDLRRILTDYGFTGHPMLKDFPLTGYDEVRYDLQKKQVVYQPVNLQQDFRNFDAISPWKG 185


>gi|226348820|gb|ACO50724.1| NADH dehydrogenase subunit 9 [Micromonas pusilla CCMP1545]
          Length = 180

 Score =  194 bits (494), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 89/158 (56%), Positives = 106/158 (67%)

Query: 29  ELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLR 88
           E    V    L+     L       F  ++D+  VD+ SR+ RFDVVYH LS +YN RLR
Sbjct: 18  EAECVVHPSALLFFMQVLHKTTTLQFKVLVDVTAVDYPSRAKRFDVVYHLLSVQYNTRLR 77

Query: 89  VKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDF 148
           VK  V E   V S+  +YP A+WFEREVWDM+GI F  HPDLRRILTDYGF+GHPLRKDF
Sbjct: 78  VKTMVDELTPVHSLTSLYPSANWFEREVWDMFGICFLHHPDLRRILTDYGFQGHPLRKDF 137

Query: 149 PVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWE 186
           P++G+VE  YDD  K+VV  PVEL QE R +DF SPWE
Sbjct: 138 PLSGYVEFRYDDSKKRVVAEPVELSQEFRYFDFASPWE 175


>gi|71906590|ref|YP_284177.1| NADH dehydrogenase subunit C [Dechloromonas aromatica RCB]
 gi|123627978|sp|Q47HH4|NUOC_DECAR RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|71846211|gb|AAZ45707.1| NADH dehydrogenase subunit C [Dechloromonas aromatica RCB]
          Length = 201

 Score =  194 bits (493), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 77/203 (37%), Positives = 112/203 (55%), Gaps = 18/203 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  K+E L   +   F   ++    ++GE++++V   D   + + LRD+    F  +IDL
Sbjct: 1   MSAKLETLSQNLQEHFGDKLKSLKLALGEITIEVAAADYFCVMTALRDEAAFGFEEMIDL 60

Query: 61  CGVDFLSRSNRFD------VVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWF 112
           CGVD+ +  +         VV H LS   N RLRV++   +    SV SI  ++  A+WF
Sbjct: 61  CGVDYSTYGDGTWQGARFAVVVHLLSVANNWRLRVRVFAEDEGFPSVASITTVWASANWF 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D+YGI F GH DLRRILTDYGF GHP RKDFP++G VE+ YD    +V+Y+PV +
Sbjct: 121 EREAFDLYGIAFVGHDDLRRILTDYGFIGHPFRKDFPISGHVEMRYDPDQARVIYQPVTI 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKE 195
                      P E    +  ++
Sbjct: 181 E----------PRENTPRIVRED 193


>gi|217970158|ref|YP_002355392.1| NADH dehydrogenase subunit C [Thauera sp. MZ1T]
 gi|217507485|gb|ACK54496.1| NADH (or F420H2) dehydrogenase, subunit C [Thauera sp. MZ1T]
          Length = 201

 Score =  194 bits (492), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 76/204 (37%), Positives = 113/204 (55%), Gaps = 18/204 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  K+E L   + + F   ++  V   GE++++V   +   +   LRD     F  +IDL
Sbjct: 1   MSAKLERLSQTLRDVFGNRIQSLVLDRGEVTIEVSAAEYPRVARQLRDHADLRFEQLIDL 60

Query: 61  CGVDFLSRSNRFD------VVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWF 112
            G+D+ +  N          V H  S K+N RLRV++   +     + S+V ++P A+W+
Sbjct: 61  SGLDYSAYGNAIWEGKRFASVAHLTSVKHNWRLRVRVFADDDAFPVIDSVVDVWPSANWY 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D+YGI + GHPDLRRILTDYGF GHP RKDFPV+G+VE+ YD +  +VVY+PV +
Sbjct: 121 ERESFDLYGILYSGHPDLRRILTDYGFVGHPFRKDFPVSGYVEMRYDPEQGRVVYQPVSI 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKED 196
                      P E    +  +E 
Sbjct: 181 E----------PRENTPRIVREEK 194


>gi|239947492|ref|ZP_04699245.1| NADH-quinone oxidoreductase subunit C [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239921768|gb|EER21792.1| NADH-quinone oxidoreductase subunit C [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 197

 Score =  194 bits (492), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 79/195 (40%), Positives = 119/195 (61%), Gaps = 1/195 (0%)

Query: 4   KIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGV 63
            ++ L + +V   S  +         L+  +    L+     L++     F  + DL G 
Sbjct: 2   TLDKLIEKLVAKSSILITPVTVK-NYLAYKIAPNFLLPFLKALKESEELRFTVLTDLFGS 60

Query: 64  DFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIF 123
           DF  R  RF+VVY+ LS K N+RL +K+ ++E +++PS + I+  A W+EREV+DMYGI 
Sbjct: 61  DFPERDKRFEVVYNLLSLKLNKRLIIKVDISEKETIPSAMNIFSAACWYEREVYDMYGIN 120

Query: 124 FEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLS 183
           F+G+ D RRILTDY FEGHPLRKDFP+TG+ ++ YD+K+KKV Y PV+L  E+R++DF S
Sbjct: 121 FDGNDDKRRILTDYEFEGHPLRKDFPLTGYTQVKYDEKLKKVAYEPVDLDIEYREFDFSS 180

Query: 184 PWEGVNSLFAKEDSK 198
            W     +   ++  
Sbjct: 181 HWHSPTYILPGDEKA 195


>gi|163855989|ref|YP_001630287.1| NADH dehydrogenase subunit C [Bordetella petrii DSM 12804]
 gi|218534259|sp|A9II05|NUOC_BORPD RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|163259717|emb|CAP42018.1| NADH dehydrogenase I, 30 kDa subunit, chain C [Bordetella petrii]
          Length = 209

 Score =  193 bits (490), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 79/212 (37%), Positives = 118/212 (55%), Gaps = 29/212 (13%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           + ++E L   +  +    +     ++GEL+L+V     +++C+ LR D    F   IDLC
Sbjct: 3   MTRLETLKHNLQAALGADI-ALTEALGELTLEVPADQWLAVCNKLRTDAGLSFETCIDLC 61

Query: 62  GVDFLSRSN----------------RFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIV 103
           GVD+L+  N                R+ VV H LS  +N RLRV+    +     V S++
Sbjct: 62  GVDYLTWGNGTRQAGEDKVAGVQRSRYAVVAHLLSIAHNWRLRVRTWAPDDDFPMVGSLI 121

Query: 104 GIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVK 163
             +PG +WFERE +D++GI FEGHPDLRRILTDYGF GHP RKDFP++G VE+ YD + +
Sbjct: 122 DCWPGVNWFEREAFDLFGIVFEGHPDLRRILTDYGFIGHPFRKDFPLSGTVEMRYDPEQR 181

Query: 164 KVVYRPVELMQEHRDYDFLSPWEGVNSLFAKE 195
           +V+Y+PV +           P E    +  ++
Sbjct: 182 RVIYQPVTID----------PREITPRVVRED 203


>gi|307101738|ref|YP_003875482.1| NADH dehydrogenase subunit 9 [Silene latifolia]
 gi|296040729|gb|ADG85332.1| NADH dehydrogenase subunit 9 [Silene latifolia]
 gi|301338033|gb|ADK73325.1| NADH dehydrogenase subunit 9 [Silene latifolia]
          Length = 192

 Score =  193 bits (490), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 86/175 (49%), Positives = 115/175 (65%), Gaps = 1/175 (0%)

Query: 14  NSFSGS-VRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRF 72
            +     V+    S      D +   L  L  FL+   +  F  +ID+CGVD+ SR  RF
Sbjct: 12  ETLPKKWVKKIEKSEHGNRFDTNTDYLFQLLCFLKLHTYTRFQVLIDICGVDYPSRKLRF 71

Query: 73  DVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRR 132
           +VVY+ LS +YN R+RV+ +  E   + S+V ++P A W+EREVWDM+G+ F  HPDLRR
Sbjct: 72  EVVYNLLSTRYNSRIRVQTSADEVTRISSVVSLFPSAGWWEREVWDMFGVSFINHPDLRR 131

Query: 133 ILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           ILTDYGFEGHPLRKDFP++G+VE+ YDD  K+VV  P+E+ QE R +DF SPWE 
Sbjct: 132 ILTDYGFEGHPLRKDFPLSGYVEVRYDDPEKRVVSEPIEMTQEFRYFDFASPWEQ 186


>gi|326316101|ref|YP_004233773.1| NADH (or F420H2) dehydrogenase subunit C [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323372937|gb|ADX45206.1| NADH (or F420H2) dehydrogenase, subunit C [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 202

 Score =  193 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 78/199 (39%), Positives = 113/199 (56%), Gaps = 18/199 (9%)

Query: 6   EDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDF 65
           E L D +  +     R  V ++ EL++ V   D ++    LRD P C F  ++DLCG+D+
Sbjct: 9   EALRDAVAAALGDKARDIVIALDELTVTVPAADYLAAMQLLRDAPGCRFEQLVDLCGIDY 68

Query: 66  LSRSN------RFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWFEREVW 117
            +  +      R+ VV H LS   N+R+RVK+   +     V S+  I+  A+W+ERE +
Sbjct: 69  STYGDVGTEGARYAVVSHLLSVSLNQRVRVKVFCPDDDFPVVASVSSIWNSANWYEREAF 128

Query: 118 DMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHR 177
           D+YGI F+GH DLRRILTDYGF GHP RKDFP++G VE+ YD + ++VVY PV +     
Sbjct: 129 DLYGIVFDGHDDLRRILTDYGFIGHPFRKDFPLSGHVEMRYDTEARRVVYEPVTIE---- 184

Query: 178 DYDFLSPWEGVNSLFAKED 196
                 P E    +  +E 
Sbjct: 185 ------PREITPRIIREEK 197


>gi|297538954|ref|YP_003674723.1| NADH (or F420H2) dehydrogenase subunit C [Methylotenera sp. 301]
 gi|297258301|gb|ADI30146.1| NADH (or F420H2) dehydrogenase, subunit C [Methylotenera sp. 301]
          Length = 198

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 65/181 (35%), Positives = 103/181 (56%), Gaps = 8/181 (4%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  K++ L   +  S    +   V ++ E++++    + +++C  LRD     F  +IDL
Sbjct: 1   MSAKLDQLLSDLQASLGDKITKHVVALDEITIECKAENYLAVCQILRDATTLKFEQLIDL 60

Query: 61  CGVDFLSRSNRFD--------VVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWF 112
            GVD+ +  +                +S  +  RLRV     +   +P++V I+  A+W+
Sbjct: 61  SGVDYQTYGDGAYDGVRYAVVCHLLSVSLNHRVRLRVFAQDEDFPILPTLVDIWSVANWY 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +DM+GI FE HPDLRR+LTDYGF GHP RKDFP+ G VE+ YD + ++V+Y+PV +
Sbjct: 121 EREAFDMFGIMFENHPDLRRLLTDYGFVGHPFRKDFPMIGNVEMRYDPEQQRVIYQPVTI 180

Query: 173 M 173
            
Sbjct: 181 D 181


>gi|2499319|sp|Q33994|NDUS3_BETTR RecName: Full=NADH-ubiquinone oxidoreductase 27 kDa subunit;
           AltName: Full=Complex I-27kD; Short=CI-27kD; AltName:
           Full=NADH dehydrogenase subunit 9
          Length = 192

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 85/175 (48%), Positives = 115/175 (65%), Gaps = 1/175 (0%)

Query: 14  NSFSGS-VRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRF 72
            +     V+    S      D +   L  L  FL+   +  F  +ID+CGVD+ SR  RF
Sbjct: 12  ETLPKKWVKKIEKSEHGNRFDTNTDYLFQLLCFLKLHTYTRFQVLIDICGVDYPSRKRRF 71

Query: 73  DVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRR 132
           +VVY+ LS +YN R+R++ +  E   + S+V ++P A W+EREVWDM+G+ F  HPDLRR
Sbjct: 72  EVVYNLLSTRYNSRIRLQTSADEVTRISSVVSLFPSAGWWEREVWDMFGVSFINHPDLRR 131

Query: 133 ILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           ILTDYGFEGHPLRKDFP++G+VE+ YDD  K+VV  P+E+ QE R +DF SPWE 
Sbjct: 132 ILTDYGFEGHPLRKDFPLSGYVEVRYDDPEKRVVSEPIEMTQEFRYFDFASPWEQ 186


>gi|329914958|ref|ZP_08276194.1| NADH-ubiquinone oxidoreductase chain C [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327545008|gb|EGF30333.1| NADH-ubiquinone oxidoreductase chain C [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 198

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 76/204 (37%), Positives = 117/204 (57%), Gaps = 18/204 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  K+++L   + ++    +    N++GE++L +     +S    LRD P   F  ++DL
Sbjct: 1   MTTKLDNLQAALHSALGDHIVSLTNALGEITLVIKDSHYLSAMRVLRDHPDTRFEQLLDL 60

Query: 61  CGVDFLSRSNRFD------VVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADWF 112
            GVDF +  +         VV H LS  +N R+RV++  ++ +     S++ I+  A+W+
Sbjct: 61  AGVDFSTYGDGAWDGRRFAVVSHLLSLTHNWRVRVRVFASDDEVPVVASLIDIWSSANWY 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D +GI FEGH DLRRILTDYGF GHP RKDFPV+G+VE+ YD + K+V+Y+PV +
Sbjct: 121 EREAFDFFGILFEGHDDLRRILTDYGFIGHPFRKDFPVSGYVEMRYDPEQKRVIYQPVTI 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKED 196
                      P E V  +  +E 
Sbjct: 181 E----------PREVVPRVIREEQ 194


>gi|149927543|ref|ZP_01915797.1| NADH dehydrogenase subunit C [Limnobacter sp. MED105]
 gi|149823816|gb|EDM83042.1| NADH dehydrogenase subunit C [Limnobacter sp. MED105]
          Length = 203

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 76/208 (36%), Positives = 109/208 (52%), Gaps = 22/208 (10%)

Query: 1   MVRK----IEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVN 56
           M +     +E L   +V +    +     + GE++L V     +  C  LRD     F  
Sbjct: 1   MTQNQSLSLEKLSADLVAALGDRIVECKLAFGEVNLTVKADSYMESCLILRDHEDLQFEQ 60

Query: 57  IIDLCGVDFLSRSN------RFDVVYHFLSPKYNRRLRVKIAVAEGKSVP--SIVGIYPG 108
           +IDLCG+D     N      RF VV   LS   N R+R+K+   +       S++ ++  
Sbjct: 61  LIDLCGLDRSEYGNELNESQRFWVVCQLLSVSKNMRVRLKVCCPDDDLPTVASVIDVWSS 120

Query: 109 ADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYR 168
           A+W+ERE +D+YGI FEGHPDLRRILTDYGF GHP RKDFP++G VE+ YD ++ +VVY+
Sbjct: 121 ANWYEREAFDLYGIVFEGHPDLRRILTDYGFVGHPFRKDFPLSGHVEMRYDPELGRVVYQ 180

Query: 169 PVELMQEHRDYDFLSPWEGVNSLFAKED 196
           PV +           P E    +  +  
Sbjct: 181 PVTIE----------PREITPRIIREPQ 198


>gi|119897689|ref|YP_932902.1| NADH dehydrogenase subunit C [Azoarcus sp. BH72]
 gi|218534250|sp|A1K5B0|NUOC_AZOSB RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|119670102|emb|CAL94015.1| respiratory-chain NADH dehydrogenase, chain C probable [Azoarcus
           sp. BH72]
          Length = 201

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 76/204 (37%), Positives = 116/204 (56%), Gaps = 18/204 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  K+E L   + +     V   V   GE++++V  G+ + +   LRD+    F  ++D+
Sbjct: 1   MSAKLERLSQTLRDVLGDVVESLVVDRGEVTIEVAAGNFLDVARRLRDEAALGFEQLMDI 60

Query: 61  CGVDFL------SRSNRFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWF 112
            G+D+        +  RF  V H LS K N RLR+++   +     + S+V ++P A+WF
Sbjct: 61  SGIDYSAFGNGAWQGKRFASVAHLLSVKNNWRLRLRVFADDDDFPVLGSLVEVWPSANWF 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D+YGI + GHPDLRRILTDYGF GHP RKDFP++G+VE+ YD +  +VVY+PV +
Sbjct: 121 EREAFDLYGILYAGHPDLRRILTDYGFVGHPFRKDFPISGYVEMRYDPEQGRVVYQPVTI 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKED 196
                      P E    +  +E+
Sbjct: 181 E----------PRENTPRIVREEN 194


>gi|323435086|ref|YP_004222304.1| NADH dehydrogenase subunit 9 [Beta vulgaris subsp. maritima]
 gi|317905639|emb|CBJ14038.1| NADH dehydrogenase subunit 9 [Beta vulgaris subsp. maritima]
 gi|319439819|emb|CBJ17529.1| NADH dehydrogenase subunit 9 [Beta vulgaris subsp. maritima]
          Length = 192

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 85/175 (48%), Positives = 113/175 (64%), Gaps = 1/175 (0%)

Query: 14  NSFSGS-VRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRF 72
            +     V+    S      D +   L  L  FL+   +  F  +ID+CGVD+ SR  RF
Sbjct: 12  ETLPKKWVKKIEKSEHGNRFDTNTDYLFQLLCFLKLHTYTRFQVLIDICGVDYPSRKRRF 71

Query: 73  DVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRR 132
           +VVY+ LS +YN R+RV+    E   +  +V ++P A W+EREVWDM+G+ F  HPDLRR
Sbjct: 72  EVVYNLLSTRYNSRIRVQTCADEVTRISLVVSLFPSAGWWEREVWDMFGVSFINHPDLRR 131

Query: 133 ILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           ILTDYGFEGHPLRKDFP++G+VE+ YDD  K+VV  P+E+ QE R +DF SPWE 
Sbjct: 132 ILTDYGFEGHPLRKDFPLSGYVEVRYDDPEKRVVSEPIEMTQEFRYFDFASPWEQ 186


>gi|221068610|ref|ZP_03544715.1| NADH (or F420H2) dehydrogenase, subunit C [Comamonas testosteroni
           KF-1]
 gi|220713633|gb|EED69001.1| NADH (or F420H2) dehydrogenase, subunit C [Comamonas testosteroni
           KF-1]
          Length = 203

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 81/199 (40%), Positives = 116/199 (58%), Gaps = 18/199 (9%)

Query: 6   EDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDF 65
           E L D +  +    VR    + GE++++V  G  + +   LR+ P C F  ++DLCGVD+
Sbjct: 9   EKLRDVVTAALGDKVRSVTLAYGEVTVEVSAGQYLDVMQILRNAPDCQFEMLLDLCGVDY 68

Query: 66  LSR------SNRFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWFEREVW 117
            +         RF VV H +S   N+RLRV++  A+     V SI  I+  A+WFERE +
Sbjct: 69  STYAEVGKDGPRFAVVSHLMSLTLNQRLRVRVYCADDDFPVVASINPIWNSANWFEREAF 128

Query: 118 DMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHR 177
           D++GI FEGH DLRRILTDYGF GHP RKDFP++G VE+ YD + ++VVY+PV +     
Sbjct: 129 DLFGIVFEGHEDLRRILTDYGFIGHPFRKDFPLSGHVEMRYDAEQQRVVYQPVTIE---- 184

Query: 178 DYDFLSPWEGVNSLFAKED 196
                 P E    +  +E+
Sbjct: 185 ------PREITPRIIREEN 197


>gi|162279909|ref|NP_063974.2| NADH dehydrogenase subunit 9 [Beta vulgaris subsp. vulgaris]
 gi|37999950|sp|Q37787|NDUS3_BETVU RecName: Full=NADH-ubiquinone oxidoreductase 27 kDa subunit;
           AltName: Full=Complex I-27kD; Short=CI-27kD; AltName:
           Full=NADH dehydrogenase subunit 9
 gi|27753503|dbj|BAA07213.2| NADH dehydrogenase subunit 9 [Beta vulgaris subsp. vulgaris]
 gi|148491411|dbj|BAA99286.2| NADH dehydrogenase subunit 9 [Beta vulgaris subsp. vulgaris]
          Length = 192

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 84/175 (48%), Positives = 113/175 (64%), Gaps = 1/175 (0%)

Query: 14  NSFSGS-VRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRF 72
            +     V+    S      D +   L  L  FL+   +  F  +ID+CGVD+ SR  RF
Sbjct: 12  ETLPKKWVKKIEKSEHGNRFDTNTDYLFQLLCFLKLHTYTRFQVLIDICGVDYPSRKRRF 71

Query: 73  DVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRR 132
           +VVY+ LS +YN R+R++    E   +  +V ++P A W+EREVWDM+G+ F  HPDLRR
Sbjct: 72  EVVYNLLSTRYNSRIRLQTCADEVTRISLVVSLFPSAGWWEREVWDMFGVSFINHPDLRR 131

Query: 133 ILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           ILTDYGFEGHPLRKDFP++G+VE+ YDD  K+VV  P+E+ QE R +DF SPWE 
Sbjct: 132 ILTDYGFEGHPLRKDFPLSGYVEVRYDDPEKRVVSEPIEMTQEFRYFDFASPWEQ 186


>gi|120609952|ref|YP_969630.1| NADH (or F420H2) dehydrogenase subunit C [Acidovorax citrulli
           AAC00-1]
 gi|218534248|sp|A1TLL8|NUOC_ACIAC RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|120588416|gb|ABM31856.1| NADH dehydrogenase subunit C [Acidovorax citrulli AAC00-1]
          Length = 202

 Score =  192 bits (488), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 80/199 (40%), Positives = 114/199 (57%), Gaps = 18/199 (9%)

Query: 6   EDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDF 65
           E L D +  +    VR  V ++ EL++ V   D ++    LRD P C F  ++DLCG+D+
Sbjct: 9   EALRDAVAAALGDKVRDIVLALDELTVTVSAADYLAAMQLLRDAPGCRFEQLMDLCGIDY 68

Query: 66  LSRS------NRFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWFEREVW 117
            +         R+ VV H LS   N+R+RVK+   +     V S+ GI+  A+W+ERE +
Sbjct: 69  STYGDVGTEGPRYAVVSHLLSVSLNQRVRVKVFCPDDDFPVVASVSGIWNSANWYEREAF 128

Query: 118 DMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHR 177
           D+YGI F+GH DLRRILTDYGF GHP RKDFP++G VE+ YD + ++VVY PV +     
Sbjct: 129 DLYGIVFDGHDDLRRILTDYGFIGHPFRKDFPLSGHVEMRYDTEARRVVYEPVTIE---- 184

Query: 178 DYDFLSPWEGVNSLFAKED 196
                 P E    +  +E 
Sbjct: 185 ------PREITPRIIREEK 197


>gi|91789114|ref|YP_550066.1| NADH (or F420H2) dehydrogenase subunit C [Polaromonas sp. JS666]
 gi|123164660|sp|Q127X4|NUOC_POLSJ RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|91698339|gb|ABE45168.1| NADH dehydrogenase subunit C [Polaromonas sp. JS666]
          Length = 203

 Score =  192 bits (488), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 78/198 (39%), Positives = 113/198 (57%), Gaps = 18/198 (9%)

Query: 7   DLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFL 66
            LGD I       V+    ++GE+++ V   D ++    LRD   C F  +IDLCG+D+ 
Sbjct: 11  QLGDTIAAVLGDKVKSLKIALGEVTVTVGAADYLASAVLLRDAAGCRFEQLIDLCGLDYS 70

Query: 67  SRSN------RFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWFEREVWD 118
              +      R+ V  H LS   N+R+R+K+   +     V S+ G++  A+WFERE +D
Sbjct: 71  EYKDGQYDGLRYCVASHLLSVSLNQRVRLKVFCPDDDFPVVDSVNGVWNSANWFEREAFD 130

Query: 119 MYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRD 178
           +YGI FEGH DLRRILTDYGF GHP RKDFP TG+VE+ YD + K+V+Y+PV +      
Sbjct: 131 LYGIIFEGHNDLRRILTDYGFIGHPFRKDFPTTGYVEMRYDAEQKRVIYQPVTIE----- 185

Query: 179 YDFLSPWEGVNSLFAKED 196
                P E    +  +++
Sbjct: 186 -----PREITPRVIREDN 198


>gi|222110088|ref|YP_002552352.1| NADH (or f420h2) dehydrogenase subunit c [Acidovorax ebreus TPSY]
 gi|221729532|gb|ACM32352.1| NADH (or F420H2) dehydrogenase, subunit C [Acidovorax ebreus TPSY]
          Length = 202

 Score =  192 bits (487), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 77/199 (38%), Positives = 111/199 (55%), Gaps = 18/199 (9%)

Query: 6   EDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDF 65
           E L D + ++    VR    ++ E+++ V     +     LRD P C F  +IDLCGVD+
Sbjct: 9   ESLRDVVASALGDRVRQISVALDEVTVVVSAARYLEAMQILRDAPDCKFEQLIDLCGVDY 68

Query: 66  LSRS------NRFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWFEREVW 117
            +         R+ VV H LS   N+RLRVK+  ++     V S+  I+  A+WFERE +
Sbjct: 69  SAYGATGSEGPRYAVVSHLLSVSLNQRLRVKVFCSDDDFPIVASVTDIWNSANWFEREAF 128

Query: 118 DMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHR 177
           D++GI F+GH DLRRILTDYGF GHP RKDFP++G VE+ YD   ++V+Y PV +     
Sbjct: 129 DLFGIVFDGHNDLRRILTDYGFIGHPFRKDFPLSGHVEMRYDADQRRVIYEPVTIE---- 184

Query: 178 DYDFLSPWEGVNSLFAKED 196
                 P E    +  ++ 
Sbjct: 185 ------PREVTPRIIREDK 197


>gi|289065165|ref|YP_003434217.1| NADH dehydrogenase subunit 9 [Chattonella marina]
 gi|288871877|dbj|BAI70564.1| NADH dehydrogenase subunit 9 [Chattonella marina]
          Length = 186

 Score =  192 bits (487), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 76/187 (40%), Positives = 115/187 (61%), Gaps = 3/187 (1%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M + I +    + +     +        E+ + V    L+    FL+      +  +  +
Sbjct: 1   MNQIIFNFAFSLQSLIP--IDNTKLFKNEVIISVPSKYLLESIYFLKFHTQSQYKILTSI 58

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
            GVD+     RF++VY  L+  YN RLRVK  V E   +PSI+ ++P ++W+EREVWD++
Sbjct: 59  SGVDYPQYQQRFEIVYDLLTLVYNNRLRVKTYVDEVTPLPSIISVFPCSNWWEREVWDLF 118

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVE-LMQEHRDY 179
           G+FF  HPDLRRILTDYGFEGHPLRK+FP++G+VE+ YD+  K+VV  P++ L QE R +
Sbjct: 119 GVFFLNHPDLRRILTDYGFEGHPLRKNFPLSGYVEVRYDESQKRVVCEPIKQLSQEFRSF 178

Query: 180 DFLSPWE 186
           +F +PW+
Sbjct: 179 NFPTPWK 185


>gi|33592009|ref|NP_879653.1| NADH dehydrogenase subunit C [Bordetella pertussis Tohama I]
 gi|161609262|ref|NP_890374.2| NADH dehydrogenase subunit C [Bordetella bronchiseptica RB50]
 gi|81425362|sp|Q7VZQ3|NUOC_BORPE RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|33571653|emb|CAE41146.1| respiratory-chain NADH dehydrogenase, 30 kDa subunit [Bordetella
           pertussis Tohama I]
 gi|332381425|gb|AEE66272.1| NADH dehydrogenase subunit C [Bordetella pertussis CS]
          Length = 207

 Score =  192 bits (487), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 86/211 (40%), Positives = 121/211 (57%), Gaps = 27/211 (12%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M+ ++E L + +  +F         S+GEL+L+V      S C+ LR DP   F + IDL
Sbjct: 2   MMTRLETLKNNLQAAFGQD-LALTESLGELTLEVAAEQWFSACTKLRTDPALRFESCIDL 60

Query: 61  CGVDFLSRSN--------------RFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVG 104
           CGVD+L+  N              R+ VV H LS ++N RLRV+    +     V S++ 
Sbjct: 61  CGVDYLTWGNGTQPEEKTGPVTRGRYAVVVHLLSIEHNWRLRVRTWAPDDEFPMVSSLLE 120

Query: 105 IYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKK 164
            +PG +WFERE +D+YGI FEGHPDLRRILTDYGF GHP RKDFP++G VE+ YD + K+
Sbjct: 121 CWPGVNWFEREAFDLYGIVFEGHPDLRRILTDYGFIGHPFRKDFPLSGTVEMRYDPEQKR 180

Query: 165 VVYRPVELMQEHRDYDFLSPWEGVNSLFAKE 195
           V+Y+PV +           P E    +  ++
Sbjct: 181 VIYQPVTID----------PREITPRVVRED 201


>gi|121593379|ref|YP_985275.1| NADH (or F420H2) dehydrogenase subunit C [Acidovorax sp. JS42]
 gi|218534270|sp|A1W4M4|NUOC_ACISJ RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|120605459|gb|ABM41199.1| NADH dehydrogenase subunit C [Acidovorax sp. JS42]
          Length = 202

 Score =  192 bits (487), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 77/199 (38%), Positives = 111/199 (55%), Gaps = 18/199 (9%)

Query: 6   EDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDF 65
           E L D + ++    VR    ++ E+++ V     +     LRD P C F  +IDLCGVD+
Sbjct: 9   ESLRDVVASALGDRVRQISVALDEVTVVVSAARYLEAMQILRDAPDCKFEQLIDLCGVDY 68

Query: 66  LSRS------NRFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWFEREVW 117
            +         R+ VV H LS   N+RLRVK+  ++     V S+  I+  A+WFERE +
Sbjct: 69  SAYGATGSEGPRYAVVSHLLSVSLNQRLRVKVFCSDDDFPIVASVTDIWNSANWFEREAF 128

Query: 118 DMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHR 177
           D++GI F+GH DLRRILTDYGF GHP RKDFP++G VE+ YD   ++V+Y PV +     
Sbjct: 129 DLFGIVFDGHNDLRRILTDYGFIGHPFRKDFPLSGHVEMRYDADQRRVIYEPVTIE---- 184

Query: 178 DYDFLSPWEGVNSLFAKED 196
                 P E    +  ++ 
Sbjct: 185 ------PREVTPRVIREDK 197


>gi|81429888|sp|Q7WCU1|NUOC_BORBR RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|33577256|emb|CAE35813.1| respiratory-chain NADH dehydrogenase, 30 kDa subunit [Bordetella
           bronchiseptica RB50]
          Length = 215

 Score =  191 bits (486), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 86/211 (40%), Positives = 121/211 (57%), Gaps = 27/211 (12%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M+ ++E L + +  +F         S+GEL+L+V      S C+ LR DP   F + IDL
Sbjct: 10  MMTRLETLKNNLQAAFGQD-LALTESLGELTLEVAAEQWFSACTKLRTDPALRFESCIDL 68

Query: 61  CGVDFLSRSN--------------RFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVG 104
           CGVD+L+  N              R+ VV H LS ++N RLRV+    +     V S++ 
Sbjct: 69  CGVDYLTWGNGTQPEEKTGPVTRGRYAVVVHLLSIEHNWRLRVRTWAPDDEFPMVSSLLE 128

Query: 105 IYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKK 164
            +PG +WFERE +D+YGI FEGHPDLRRILTDYGF GHP RKDFP++G VE+ YD + K+
Sbjct: 129 CWPGVNWFEREAFDLYGIVFEGHPDLRRILTDYGFIGHPFRKDFPLSGTVEMRYDPEQKR 188

Query: 165 VVYRPVELMQEHRDYDFLSPWEGVNSLFAKE 195
           V+Y+PV +           P E    +  ++
Sbjct: 189 VIYQPVTID----------PREITPRVVRED 209


>gi|264677200|ref|YP_003277106.1| NADH (or F420H2) dehydrogenase, subunit C [Comamonas testosteroni
           CNB-2]
 gi|262207712|gb|ACY31810.1| NADH (or F420H2) dehydrogenase, subunit C [Comamonas testosteroni
           CNB-2]
          Length = 203

 Score =  191 bits (485), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 80/199 (40%), Positives = 115/199 (57%), Gaps = 18/199 (9%)

Query: 6   EDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDF 65
           E L D +  +    VR    + GE++++V     + +   LR+ P C F  ++DLCGVD+
Sbjct: 9   EKLRDVVTAALGDRVRSVTLAYGEVTVEVSADKYLDVMQILRNAPDCQFEMLLDLCGVDY 68

Query: 66  LSR------SNRFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWFEREVW 117
            +         RF VV H +S   N+RLRV++  A+     V SI  I+  A+WFERE +
Sbjct: 69  STYAEVGKDGPRFAVVSHLMSLTLNQRLRVRVYCADDDFPVVASINPIWNSANWFEREAF 128

Query: 118 DMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHR 177
           D++GI FEGH DLRRILTDYGF GHP RKDFP++G VE+ YD + ++VVY+PV +     
Sbjct: 129 DLFGIVFEGHEDLRRILTDYGFIGHPFRKDFPLSGHVEMRYDAEQQRVVYQPVTIE---- 184

Query: 178 DYDFLSPWEGVNSLFAKED 196
                 P E    +  +E+
Sbjct: 185 ------PREITPRIIREEN 197


>gi|319412294|gb|ADV41831.1| NADH dehydrogenase subunit 9 [Bigelowiella natans]
          Length = 185

 Score =  191 bits (485), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 84/182 (46%), Positives = 116/182 (63%)

Query: 5   IEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD 64
           ++   D +  S S S+        +L       +LV +  F++      F ++ D+   D
Sbjct: 3   LKKYCDQLQTSLSLSLTEVSAKGWDLRAHTTASNLVGVLFFIKSSTSSLFNSLSDIAASD 62

Query: 65  FLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFF 124
           F  ++ RF++ Y+ LS KY  RL +K+ V EG  VPSI  ++PGA+W ERE WD+ G+FF
Sbjct: 63  FPDKAERFELSYNLLSTKYGSRLLLKLTVGEGDVVPSITTLFPGANWMEREAWDLLGVFF 122

Query: 125 EGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSP 184
            GHPDLRRILTDYGFEGHPLRKDFP+TG++E  YD    ++VY PVEL QE+RD+ F SP
Sbjct: 123 NGHPDLRRILTDYGFEGHPLRKDFPLTGYLEARYDVARARIVYEPVELAQEYRDFSFKSP 182

Query: 185 WE 186
           W+
Sbjct: 183 WK 184


>gi|57239035|ref|YP_180171.1| NADH-quinone oxidoreductase chain C [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58578976|ref|YP_197188.1| NADH-quinone oxidoreductase chain C [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58617034|ref|YP_196233.1| NADH-quinone oxidoreductase chain C [Ehrlichia ruminantium str.
           Gardel]
 gi|57161114|emb|CAH58024.1| putative NADH-quinone oxidoreductase chain C [Ehrlichia ruminantium
           str. Welgevonden]
 gi|58416646|emb|CAI27759.1| NADH-quinone oxidoreductase chain C [Ehrlichia ruminantium str.
           Gardel]
 gi|58417602|emb|CAI26806.1| NADH-quinone oxidoreductase chain C [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 191

 Score =  191 bits (485), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 76/184 (41%), Positives = 111/184 (60%), Gaps = 2/184 (1%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
             +E++  +I    +  V+        L       D+ +   FL +D  C F  +ID+  
Sbjct: 6   NTLEEIMTHINTCLN--VKCIAQDSTTLEFYSTPQDIHNHILFLCNDRICKFQILIDIFI 63

Query: 63  VDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGI 122
           VD+  R  RF+++Y  LS   N R+  K+++ E +++ SI  I+  A WFERE +DMYGI
Sbjct: 64  VDYPHREARFEIIYSLLSIANNIRIFCKVSLHENENITSITNIFNAAGWFEREAFDMYGI 123

Query: 123 FFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFL 182
            F  +PDLRRILTDYGF GHP+ KDFP++G+ E+ YD   K+V+Y PV L Q+ R +DFL
Sbjct: 124 LFTNNPDLRRILTDYGFSGHPMLKDFPLSGYKEVRYDIAKKEVIYEPVNLQQDFRSFDFL 183

Query: 183 SPWE 186
           SPW+
Sbjct: 184 SPWK 187


>gi|58584501|ref|YP_198074.1| NADH:ubiquinone oxidoreductase chain C [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
 gi|75507999|sp|Q5GT42|NUOC_WOLTR RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|58418817|gb|AAW70832.1| NADH:ubiquinone oxidoreductase chain C [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 190

 Score =  191 bits (485), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 83/183 (45%), Positives = 115/183 (62%), Gaps = 2/183 (1%)

Query: 5   IEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD 64
           ++    YI         F     G + +     ++     FLRDD  C F  ++D+ GVD
Sbjct: 1   MDKTAKYIQKK--TKCEFIQQGDGTIVIYSTLDNIEDHLLFLRDDEKCRFELLVDIFGVD 58

Query: 65  FLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFF 124
           +  R  RF+++Y+ LS  +N R+ +K+ + E    PS+V I+  A WFEREV+DMYGI F
Sbjct: 59  YPDREKRFELIYNLLSIVHNIRVHIKLQLYEDDMPPSVVRIFNTASWFEREVFDMYGIEF 118

Query: 125 EGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSP 184
             HPDLRRILTDYGF+GHP+ KDFP+TG+ E+ YD + KKVVY P++L Q+ R +D LSP
Sbjct: 119 SNHPDLRRILTDYGFKGHPMLKDFPLTGYEEVRYDIEAKKVVYNPIDLPQDFRMFDSLSP 178

Query: 185 WEG 187
           WEG
Sbjct: 179 WEG 181


>gi|268164098|ref|YP_003288875.1| NADH dehydrogenase subunit 9 [Saccharina coriacea]
 gi|262318408|dbj|BAI48727.1| NADH dehydrogenase subunit 9 [Saccharina coriacea]
          Length = 190

 Score =  191 bits (485), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 77/191 (40%), Positives = 112/191 (58%), Gaps = 2/191 (1%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   +      +       V+       E+ + V    L++  +FL    +  F  +  +
Sbjct: 1   MFSSLIVYATSLTRLVP--VQTFQVFGHEIVISVSKKYLLATLTFLHHHSNGNFQMLTSI 58

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
            GVD+  R  RF+VVY  L+ + N RLR+K    E   +PS+V ++P A+W+ERE+WD++
Sbjct: 59  SGVDYPEREERFEVVYDLLNVRSNCRLRIKTHTDEINPLPSVVSLFPSANWWEREIWDLF 118

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           G+FF  HPDLRRILTDYGFEGHPLRKDFP++G+ EL YD+  + VV   +EL QE R ++
Sbjct: 119 GVFFSNHPDLRRILTDYGFEGHPLRKDFPLSGYFELRYDEDQRVVVCEAIELSQEFRSFN 178

Query: 181 FLSPWEGVNSL 191
           F  PW   N +
Sbjct: 179 FHVPWSQNNLI 189


>gi|317401990|gb|EFV82590.1| NADH dehydrogenase subunit I [Achromobacter xylosoxidans C54]
          Length = 208

 Score =  191 bits (485), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 82/213 (38%), Positives = 117/213 (54%), Gaps = 29/213 (13%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M+ ++E L + +  +    +     ++GEL+L+V      S+C+ LR +    F   IDL
Sbjct: 1   MMTRLETLKNNLQTTLGADI-ALTEALGELTLEVPAEQWFSVCNKLRTEAGLRFEICIDL 59

Query: 61  CGVDFLSRSN----------------RFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSI 102
           CGVD+L+  N                RF VV H LS + N RLRV+    +     V S+
Sbjct: 60  CGVDYLTWGNGTRQLPEEANAKVHRARFAVVAHLLSVENNWRLRVRTWAPDDEFPMVASL 119

Query: 103 VGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKV 162
           +  +P   WFERE +D+YGI FEGHPDLRRILTDYGF GHP RKDFP++G VE+ YD + 
Sbjct: 120 MECWPAVGWFEREAFDLYGIVFEGHPDLRRILTDYGFIGHPFRKDFPLSGTVEMRYDPEQ 179

Query: 163 KKVVYRPVELMQEHRDYDFLSPWEGVNSLFAKE 195
           K+V+Y+PV +           P E    +  ++
Sbjct: 180 KRVIYQPVTID----------PREITPRVVRED 202


>gi|10802934|gb|AAG23682.1|AF288091_27 NADH dehydrogenase subunit 9 [Thraustochytrium aureum]
          Length = 194

 Score =  190 bits (484), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 73/176 (41%), Positives = 107/176 (60%), Gaps = 1/176 (0%)

Query: 8   LGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLS 67
              ++      S+         + L +    L+ +  FL    +C +  + D+  VD+  
Sbjct: 4   YSKWLQKMLGKSLISVKIETNSIFLSIKKEKLLEVLVFLAKHTNCNYTILSDITVVDYPK 63

Query: 68  RSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGH 127
            +NRF+++Y+ LS   N RL VKI       VPS+V ++  A+W+ERE +D++GIFF GH
Sbjct: 64  NNNRFEIIYNLLSLTNNHRLFVKIQTNSNWFVPSMVTLFSNANWYEREAFDIFGIFFSGH 123

Query: 128 PDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDY-DFL 182
           PDLRRILTDYGFEGHPLRKDFP+ GF E+ +D + K+V+  P+E+ QE R+Y DF 
Sbjct: 124 PDLRRILTDYGFEGHPLRKDFPLNGFNEVRFDFEKKRVICEPLEISQEFRNYKDFS 179


>gi|2499321|sp|Q34011|NDUS3_BETWE RecName: Full=NADH-ubiquinone oxidoreductase 27 kDa subunit;
           AltName: Full=Complex I-27kD; Short=CI-27kD; AltName:
           Full=NADH dehydrogenase subunit 9
          Length = 192

 Score =  190 bits (484), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 85/175 (48%), Positives = 115/175 (65%), Gaps = 1/175 (0%)

Query: 14  NSFSGS-VRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRF 72
            +     V+    S      D +   L  L  FL+   +  F  +ID+CGVD+ SR  RF
Sbjct: 12  ETLPKKWVKKIEKSEHGNRFDTNTDYLFQLLCFLKLHTYTRFQVLIDICGVDYPSRKRRF 71

Query: 73  DVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRR 132
           +VVY+ LS +YN R+R++ +  E   + S+V ++P A W+EREVWDM+G+ F  HPDLRR
Sbjct: 72  EVVYNLLSTRYNSRIRLQTSADEVTRISSVVRLFPSAGWWEREVWDMFGVSFINHPDLRR 131

Query: 133 ILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           ILTDYGFEGHPLRKDFP++G+VE+ YDD  K+VV  P+E+ QE R +DF SPWE 
Sbjct: 132 ILTDYGFEGHPLRKDFPLSGYVEVRYDDPEKRVVSEPIEMTQEFRYFDFASPWEQ 186


>gi|21450013|ref|NP_659275.1| NADH dehydrogenase subunit 9 [Laminaria digitata]
 gi|21425338|emb|CAC87971.1| NADH dehydrogenase subunit 9 [Laminaria digitata]
          Length = 190

 Score =  190 bits (484), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 76/191 (39%), Positives = 112/191 (58%), Gaps = 2/191 (1%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   +      +       V+       E+ + V    L++  +FL    +  F  +  +
Sbjct: 1   MFSSLIVYATSLTRLVP--VQTFQVFGHEIVISVSKKYLLATLTFLHHHSNGNFQMLTSI 58

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
            GVD+  R  RF++VY  L+ + N RLR+K    E   +PS+V ++P A+W+ERE+WD++
Sbjct: 59  SGVDYPEREERFEIVYDLLNIRSNCRLRIKTHTDEINPLPSVVSLFPSANWWEREIWDLF 118

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           G+FF  HPDLRRILTDYGFEGHPLRKDFP++G+ EL YD+  + VV   +EL QE R ++
Sbjct: 119 GVFFSNHPDLRRILTDYGFEGHPLRKDFPLSGYFELRYDEDQRVVVCEAIELSQEFRSFN 178

Query: 181 FLSPWEGVNSL 191
           F  PW   N +
Sbjct: 179 FHVPWSQNNLI 189


>gi|161610381|ref|NP_885552.2| NADH dehydrogenase subunit C [Bordetella parapertussis 12822]
          Length = 207

 Score =  190 bits (484), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 86/210 (40%), Positives = 120/210 (57%), Gaps = 27/210 (12%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M+ ++E L + +  +F         S+GEL+L+V      S C+ LR DP   F + IDL
Sbjct: 2   MMTRLETLKNNLQAAFGQD-LALTESLGELTLEVAAEQWFSACTKLRTDPALRFESCIDL 60

Query: 61  CGVDFLSRSN--------------RFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVG 104
           CGVD+L+  N              R+ VV H LS ++N RLRV+    +     V S++ 
Sbjct: 61  CGVDYLTWGNGTQPEEKTGPVTHGRYAVVVHLLSIEHNWRLRVRTWAPDDEFPMVSSLLE 120

Query: 105 IYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKK 164
            +PG +WFERE +D+YGI FEGHPDLRRILTDYGF GHP RKDFP++G VE+ YD + K+
Sbjct: 121 CWPGVNWFEREAFDLYGIVFEGHPDLRRILTDYGFIGHPFRKDFPLSGTVEMRYDPEQKR 180

Query: 165 VVYRPVELMQEHRDYDFLSPWEGVNSLFAK 194
           V+Y+PV +           P E    +  +
Sbjct: 181 VIYQPVTID----------PREITPRVVRE 200


>gi|319761764|ref|YP_004125701.1| NADH (or f420h2) dehydrogenase, subunit c [Alicycliphilus
           denitrificans BC]
 gi|330826544|ref|YP_004389847.1| NADH (or F420H2) dehydrogenase subunit C [Alicycliphilus
           denitrificans K601]
 gi|317116325|gb|ADU98813.1| NADH (or F420H2) dehydrogenase, subunit C [Alicycliphilus
           denitrificans BC]
 gi|329311916|gb|AEB86331.1| NADH (or F420H2) dehydrogenase, subunit C [Alicycliphilus
           denitrificans K601]
          Length = 202

 Score =  190 bits (484), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 82/199 (41%), Positives = 117/199 (58%), Gaps = 18/199 (9%)

Query: 6   EDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDF 65
           E L D +  +    +R    ++GE+++ V   D ++    LRD P C F  +IDLCGVD+
Sbjct: 9   EKLRDAVAGALGDKLREIRLALGEVTVVVAAEDYLAAMEILRDAPQCRFEQLIDLCGVDY 68

Query: 66  LSRS------NRFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWFEREVW 117
            +         R+ VV H LS   N+RLRVK+   +     +PS+ GI+ GA+WFERE +
Sbjct: 69  STYGEVGTDGPRYAVVTHLLSLSLNQRLRVKVFCPDDDFPVIPSVTGIWNGANWFEREAF 128

Query: 118 DMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHR 177
           D+YGI F+GH DLRRILTDYGF GHP RKDFP++G VE+ YD + ++VVY PV +     
Sbjct: 129 DLYGIVFDGHNDLRRILTDYGFIGHPFRKDFPLSGHVEMRYDAEQRRVVYEPVTIE---- 184

Query: 178 DYDFLSPWEGVNSLFAKED 196
                 P E    +  +++
Sbjct: 185 ------PREITPRIIREDN 197


>gi|296040731|gb|ADG85333.1| NADH dehydrogenase subunit 9 [Silene noctiflora]
          Length = 192

 Score =  190 bits (484), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 89/183 (48%), Positives = 117/183 (63%), Gaps = 1/183 (0%)

Query: 8   LGDYIVNSFSG-SVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFL 66
           L  Y + +     V+    S      D     L  L  FLR   +  F  +ID+CGVD+ 
Sbjct: 6   LFKYSLETLPKSWVKRLEKSEHGTRFDTTPAFLFQLLCFLRLHTYTRFEVLIDICGVDYP 65

Query: 67  SRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEG 126
           SR  RF+VVY+ LS +YN R+RV+ +  E   + S+V ++P A W+EREVWDM+G+ F  
Sbjct: 66  SRQVRFEVVYNLLSTRYNSRIRVQSSADEVTRISSVVSLFPSAGWWEREVWDMFGLSFIN 125

Query: 127 HPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWE 186
           HPDLRRILTDYGFEGHPLRKDFP++G+VE+ YDD  K+VV  P+E+ QE R +DF SPWE
Sbjct: 126 HPDLRRILTDYGFEGHPLRKDFPLSGYVEVRYDDPEKRVVSEPIEMTQEFRYFDFASPWE 185

Query: 187 GVN 189
              
Sbjct: 186 QGK 188


>gi|187477543|ref|YP_785567.1| NADH dehydrogenase subunit C [Bordetella avium 197N]
 gi|123513816|sp|Q2KV11|NUOC_BORA1 RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|115422129|emb|CAJ48653.1| NADH dehydrogenase I chain C [Bordetella avium 197N]
          Length = 206

 Score =  190 bits (484), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 79/210 (37%), Positives = 120/210 (57%), Gaps = 27/210 (12%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M+ ++E L + +  +    +     ++GEL+L+V     +++C+ LR D    F + IDL
Sbjct: 1   MMTRLETLKNNLQATLGQDI-ALTEALGELTLEVPADQWLTVCNKLRTDAGLRFESCIDL 59

Query: 61  CGVDFLSRSN--------------RFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVG 104
           CG+D+ +  +              RF VV H LS ++N RLRV+    +     V S++ 
Sbjct: 60  CGMDYQTWGDGSHANAHDEPARPGRFAVVIHLLSIEHNWRLRVRTYAVDEEFPIVASLIE 119

Query: 105 IYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKK 164
            +PG +W+ERE +D+YGI FEGHPDLRRILTDYGF GHP RKDFP++G VE+ YD + K+
Sbjct: 120 CWPGVNWYEREAFDLYGIVFEGHPDLRRILTDYGFIGHPFRKDFPLSGTVEMRYDPEQKR 179

Query: 165 VVYRPVELMQEHRDYDFLSPWEGVNSLFAK 194
           V+Y+PV +           P E    +  +
Sbjct: 180 VIYQPVTID----------PREITPRIVRE 199


>gi|257095317|ref|YP_003168958.1| NADH (or F420H2) dehydrogenase subunit C [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047841|gb|ACV37029.1| NADH (or F420H2) dehydrogenase, subunit C [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 202

 Score =  190 bits (483), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 74/180 (41%), Positives = 107/180 (59%), Gaps = 8/180 (4%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
              +E L   +       V+    ++GE++++VD  D +++   LRD+P   F  +IDLC
Sbjct: 3   SATLEALSHTLQEHLGDRVKSLKVALGEVTVEVDAADYLAVMQTLRDEPALSFEELIDLC 62

Query: 62  GVDF------LSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADWFE 113
           GVD+           RF  V H +S   N RLRV+    +      PS+ G++  ADWFE
Sbjct: 63  GVDYSTYANAPRAGRRFAAVSHLISITRNWRLRVRCFAPDDDFPSVPSVTGVWNVADWFE 122

Query: 114 REVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELM 173
           RE +D++GI F GH DLRRILTDYGF GHP RKDFP++G+VE+ YD   ++V+Y+PV + 
Sbjct: 123 REAFDLFGIVFPGHLDLRRILTDYGFIGHPFRKDFPISGYVEMRYDPDQQRVIYQPVTIE 182


>gi|134095029|ref|YP_001100104.1| putative NADH-quinone oxidoreductase chain C [Herminiimonas
           arsenicoxydans]
 gi|218534292|sp|A4G642|NUOC_HERAR RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|133738932|emb|CAL61979.1| NADH-quinone oxidoreductase chain C (NADH dehydrogenase I, chain C)
           (NDH-1, chain C) [Herminiimonas arsenicoxydans]
          Length = 198

 Score =  190 bits (483), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 79/204 (38%), Positives = 117/204 (57%), Gaps = 18/204 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  K+E L   + N+    ++    ++GE+++ V+  D  S    LRD     F  +IDL
Sbjct: 1   MTIKLELLESALRNALGDQLQSLTLALGEITIVVNSRDYASAMRVLRDHADLRFEELIDL 60

Query: 61  CGVDFLSRSNRFD------VVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADWF 112
           CGVD+ +  +         VV H LS  +N R+RV++  ++ +     S+  I+P A+W+
Sbjct: 61  CGVDYSTYGDGAWDGQRFAVVSHLLSITHNWRVRVRVFASDDEMPVVASMTEIWPAANWY 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D +GI FEGH DLRRILTDYGF GHP RKDFPV+G+VE+ YD + K+V+Y+PV +
Sbjct: 121 EREAFDFFGILFEGHNDLRRILTDYGFIGHPFRKDFPVSGYVEMRYDPEQKRVIYQPVTI 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKED 196
                      P E V  +  +E 
Sbjct: 181 D----------PRENVPRVIREEQ 194


>gi|160900610|ref|YP_001566192.1| NADH (or F420H2) dehydrogenase subunit C [Delftia acidovorans
           SPH-1]
 gi|218534269|sp|A9BNB2|NUOC_DELAS RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|160366194|gb|ABX37807.1| NADH (or F420H2) dehydrogenase, subunit C [Delftia acidovorans
           SPH-1]
          Length = 203

 Score =  190 bits (483), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 77/208 (37%), Positives = 115/208 (55%), Gaps = 22/208 (10%)

Query: 1   MVRKI----EDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVN 56
           M+  I    E L D +  +     R    ++GE++++V     +     L   P C F  
Sbjct: 1   MMTAIAIHPEVLRDVVAAALGDKARSVTVALGEVTVEVSAAQYLEAMQVLHTAPDCRFEV 60

Query: 57  IIDLCGVDFLSR------SNRFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPG 108
           ++DLCGVD+ +         RF VV H LS   N+RLRV++   +     V S+  ++ G
Sbjct: 61  LVDLCGVDYSTYAEVGREGPRFAVVSHLLSISLNQRLRVRVFCTDDDFPVVASVTSVWAG 120

Query: 109 ADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYR 168
           A+WFERE +D++GI F+GH DLRRILTDYGF GHP RKDFP++G VE+ YD + ++VVY+
Sbjct: 121 ANWFEREAFDLFGIVFDGHDDLRRILTDYGFIGHPFRKDFPLSGHVEMRYDPEQQRVVYQ 180

Query: 169 PVELMQEHRDYDFLSPWEGVNSLFAKED 196
           PV +           P E    +  +++
Sbjct: 181 PVTIE----------PREITPRIIREDN 198


>gi|268053554|ref|YP_003288913.1| NADH dehydrogenase subunit 9 [Saccharina japonica]
 gi|268053593|ref|YP_003288951.1| NADH dehydrogenase subunit 9 [Saccharina religiosa]
 gi|268053632|ref|YP_003288989.1| NADH dehydrogenase subunit 9 [Saccharina ochotensis]
 gi|268053671|ref|YP_003289066.1| NADH dehydrogenase subunit 9 [Saccharina diabolica]
 gi|268053710|ref|YP_003289117.1| NADH dehydrogenase subunit 9 [Saccharina longipedalis]
 gi|268164059|ref|YP_003288824.1| NADH dehydrogenase subunit 9 [Saccharina angustata]
 gi|262318174|dbj|BAI48499.1| NADH dehydrogenase subunit 9 [Saccharina japonica]
 gi|262318213|dbj|BAI48537.1| NADH dehydrogenase subunit 9 [Saccharina religiosa]
 gi|262318252|dbj|BAI48575.1| NADH dehydrogenase subunit 9 [Saccharina ochotensis]
 gi|262318291|dbj|BAI48613.1| NADH dehydrogenase subunit 9 [Saccharina diabolica]
 gi|262318330|dbj|BAI48651.1| NADH dehydrogenase subunit 9 [Saccharina longipedalis]
 gi|262318369|dbj|BAI48689.1| NADH dehydrogenase subunit 9 [Saccharina angustata]
          Length = 190

 Score =  190 bits (483), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 76/191 (39%), Positives = 112/191 (58%), Gaps = 2/191 (1%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   +      +       V+       E+ + V    L++  +FL    +  F  +  +
Sbjct: 1   MFSSLIVYATSLTRLVP--VQTFQVFGHEIVISVSKKYLLATLTFLHHHSNGNFQMLTSI 58

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
            GVD+  R  RF++VY  L+ + N RLR+K    E   +PS+V ++P A+W+ERE+WD++
Sbjct: 59  SGVDYPEREERFEIVYDLLNVRSNCRLRIKTHTDEINPLPSVVSLFPSANWWEREIWDLF 118

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           G+FF  HPDLRRILTDYGFEGHPLRKDFP++G+ EL YD+  + VV   +EL QE R ++
Sbjct: 119 GVFFSNHPDLRRILTDYGFEGHPLRKDFPLSGYFELRYDEDQRVVVCEAIELSQEFRSFN 178

Query: 181 FLSPWEGVNSL 191
           F  PW   N +
Sbjct: 179 FHVPWSQNNLI 189


>gi|81426433|sp|Q7W5A9|NUOC_BORPA RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|33574338|emb|CAE38674.1| respiratory-chain NADH dehydrogenase, 30 kDa subunit [Bordetella
           parapertussis]
          Length = 215

 Score =  190 bits (483), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 86/210 (40%), Positives = 120/210 (57%), Gaps = 27/210 (12%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M+ ++E L + +  +F         S+GEL+L+V      S C+ LR DP   F + IDL
Sbjct: 10  MMTRLETLKNNLQAAFGQD-LALTESLGELTLEVAAEQWFSACTKLRTDPALRFESCIDL 68

Query: 61  CGVDFLSRSN--------------RFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVG 104
           CGVD+L+  N              R+ VV H LS ++N RLRV+    +     V S++ 
Sbjct: 69  CGVDYLTWGNGTQPEEKTGPVTHGRYAVVVHLLSIEHNWRLRVRTWAPDDEFPMVSSLLE 128

Query: 105 IYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKK 164
            +PG +WFERE +D+YGI FEGHPDLRRILTDYGF GHP RKDFP++G VE+ YD + K+
Sbjct: 129 CWPGVNWFEREAFDLYGIVFEGHPDLRRILTDYGFIGHPFRKDFPLSGTVEMRYDPEQKR 188

Query: 165 VVYRPVELMQEHRDYDFLSPWEGVNSLFAK 194
           V+Y+PV +           P E    +  +
Sbjct: 189 VIYQPVTID----------PREITPRVVRE 208


>gi|320148013|emb|CBJ20679.1| NADH dehydrogenase subunit 9 [Beta vulgaris subsp. maritima]
          Length = 206

 Score =  190 bits (483), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 84/175 (48%), Positives = 111/175 (63%), Gaps = 1/175 (0%)

Query: 14  NSFSGS-VRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRF 72
            +     V            D +   L  L  FL+   +  F  +ID+CGVD+ SR  RF
Sbjct: 12  ETLPKKWVTKIEKLEHGNRFDTNTDYLFQLLCFLKLHTYTRFQVLIDICGVDYPSRKRRF 71

Query: 73  DVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRR 132
           +VVY+ LS +YN R+RV+    E   +  +V ++P A W+EREVWDM+G+ F  HPDLRR
Sbjct: 72  EVVYNLLSTRYNSRIRVQTCADEVTRISLVVSLFPSAGWWEREVWDMFGVSFINHPDLRR 131

Query: 133 ILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           ILTDYGFEGHPLRKDFP++G+VE+ YDD  K+VV  P+E+ QE R +DF SPWE 
Sbjct: 132 ILTDYGFEGHPLRKDFPLSGYVEVRYDDPEKRVVSEPIEMTQELRYFDFASPWEQ 186


>gi|293603921|ref|ZP_06686336.1| NADH-quinone oxidoreductase subunit C [Achromobacter piechaudii
           ATCC 43553]
 gi|292817758|gb|EFF76824.1| NADH-quinone oxidoreductase subunit C [Achromobacter piechaudii
           ATCC 43553]
          Length = 208

 Score =  190 bits (482), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 81/213 (38%), Positives = 119/213 (55%), Gaps = 29/213 (13%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M+ ++E L + +  +    +     ++GEL+L+V      ++C+ LR +    F   IDL
Sbjct: 1   MMTRLESLKNNLQTTLGADI-ALTEALGELTLEVPAQQWFAVCNKLRTEAGLRFETCIDL 59

Query: 61  CGVDFLSRSN----------------RFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSI 102
           CGVD+L+  N                RF VV H LS ++N RLRV+   A+     V S+
Sbjct: 60  CGVDYLTWGNGTRQLPEEPGAKVHRARFAVVIHLLSIEHNWRLRVRTWAADDEFPIVASL 119

Query: 103 VGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKV 162
           +  +P   WFERE +D+YGI FEGHPDLRRILTDYGF GHP RKDFP++G VE+ YD + 
Sbjct: 120 MECWPAVGWFEREAFDLYGIVFEGHPDLRRILTDYGFIGHPFRKDFPLSGTVEMRYDPEQ 179

Query: 163 KKVVYRPVELMQEHRDYDFLSPWEGVNSLFAKE 195
           ++V+Y+PV +           P E    +  ++
Sbjct: 180 RRVIYQPVTID----------PREITPRVVRED 202


>gi|311247861|ref|XP_003122850.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 3,
           mitochondrial-like isoform 2 [Sus scrofa]
          Length = 234

 Score =  190 bits (482), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 84/197 (42%), Positives = 111/197 (56%), Gaps = 30/197 (15%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
           +++   G Y+       V+                                F ++ DL  
Sbjct: 56  KQLSAFGQYVAEILPKYVQQV-----------------------------QFKSLADLTA 86

Query: 63  VDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGI 122
           VD  +R NRF++VY+ LS ++N R+RVK    E   + S V +Y  A+W+ERE+WDM+G+
Sbjct: 87  VDVPTRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPIESSVTVYKAANWYEREIWDMFGV 146

Query: 123 FFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFL 182
           FF  HPDLRRILTDYGFEGHP RKDFP++G+VEL YDD+VK+VV  PVEL QE R +D  
Sbjct: 147 FFANHPDLRRILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDLN 206

Query: 183 SPWEGVN-SLFAKEDSK 198
           SPWE         ED K
Sbjct: 207 SPWEAFPAYRQPPEDLK 223


>gi|218673425|ref|ZP_03523094.1| NADH dehydrogenase subunit C [Rhizobium etli GR56]
          Length = 169

 Score =  190 bits (482), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 93/161 (57%), Positives = 112/161 (69%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + +L  Y+  +    +  +    GEL+L     +L++L +FLRDD  C FVN+ID+
Sbjct: 1   MSEALTELASYLGEARGNLIAASQLKYGELTLTTTGENLIALLTFLRDDAKCGFVNLIDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
           CGVD+  R  RFDVVYH LSPK N R+RVK+A  E   VPS   +YPGADWFERE WDMY
Sbjct: 61  CGVDWPQRELRFDVVYHLLSPKQNLRVRVKVATDEDTPVPSACAVYPGADWFERETWDMY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDK 161
           G+ F GHPDLRRILTDYGFE HPLRKDFP TGFVE+ YDD 
Sbjct: 121 GVLFTGHPDLRRILTDYGFESHPLRKDFPTTGFVEVRYDDA 161


>gi|253996971|ref|YP_003049035.1| NADH (or F420H2) dehydrogenase subunit C [Methylotenera mobilis
           JLW8]
 gi|253983650|gb|ACT48508.1| NADH (or F420H2) dehydrogenase, subunit C [Methylotenera mobilis
           JLW8]
          Length = 198

 Score =  190 bits (482), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 75/186 (40%), Positives = 114/186 (61%), Gaps = 10/186 (5%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  K++ L   +       +     ++ E++++    D +++C  LRDD    F  +IDL
Sbjct: 1   MSAKLDQLLASLQTVLGEKITKQTVALDEVTIECRAEDYLAVCELLRDDTALKFEQLIDL 60

Query: 61  CGVDFLSRSN------RFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWF 112
           CGVD+           R+ VV HFLS   N+RLR+++   +     + ++VG++P A+WF
Sbjct: 61  CGVDYQEYGEGSYDGLRYAVVCHFLSVSLNQRLRLRVFAKDEDFPILSTLVGLWPVANWF 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D+YGI FE HPDLRR+LTDYGF GHP RKDFP+ G VE+ YD + ++V+Y+PV +
Sbjct: 121 EREAFDLYGILFENHPDLRRLLTDYGFVGHPFRKDFPMIGNVEMRYDPEQQRVIYQPVSI 180

Query: 173 MQEHRD 178
             E R+
Sbjct: 181 --ELRN 184


>gi|194033258|ref|YP_002000595.1| NADH dehydrogenase subunit 9 [Oryza sativa Japonica Group]
 gi|60498753|dbj|BAC19900.2| NADH dehydrogenase subunit 9 [Oryza sativa Japonica Group]
          Length = 190

 Score =  190 bits (482), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 82/156 (52%), Positives = 109/156 (69%)

Query: 32  LDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKI 91
              +   L  L  FL+   +     +ID+CGVD+ SR  RF+VVY+ LS +YN R+RV+ 
Sbjct: 31  FYTNTDYLFPLLCFLKWHTYTRVQVLIDICGVDYPSRKRRFEVVYNLLSTRYNSRIRVQT 90

Query: 92  AVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVT 151
           +  E   + S+V ++P A W+EREVWDM+G+ F  HPDLRRILTDYGFEGHPLRKDFP++
Sbjct: 91  SADEVTRISSVVSLFPSAGWWEREVWDMFGVSFINHPDLRRILTDYGFEGHPLRKDFPLS 150

Query: 152 GFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           G+VE+ YDD  K+VV  P+E+ QE R +DF SPWE 
Sbjct: 151 GYVEVRYDDPEKRVVSEPIEMTQEFRYFDFASPWEQ 186


>gi|218460351|ref|ZP_03500442.1| NADH dehydrogenase subunit C [Rhizobium etli Kim 5]
          Length = 133

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 87/129 (67%), Positives = 99/129 (76%)

Query: 71  RFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDL 130
           RFDVVYH LSPK N R+RVK+A  E   VPS   +YPGADWFERE WDMYG+ F GHPDL
Sbjct: 4   RFDVVYHLLSPKQNLRIRVKVATDEDTPVPSACAVYPGADWFERETWDMYGVLFTGHPDL 63

Query: 131 RRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEGVNS 190
           RRILTDYGFEGHPLRKDFP TGFVE+ YDD  K+VVY PVEL QE R++DF+SPWEG   
Sbjct: 64  RRILTDYGFEGHPLRKDFPTTGFVEVRYDDAAKRVVYEPVELKQEFRNFDFMSPWEGTEY 123

Query: 191 LFAKEDSKD 199
           +   ++   
Sbjct: 124 VLPGDEKAK 132


>gi|57337517|emb|CAI23792.1| NADH dehydrogenase, subunit 9 [Zea mays]
          Length = 190

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 82/156 (52%), Positives = 109/156 (69%)

Query: 32  LDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKI 91
              +   L  L  FL+   +     +ID+CGVD+ SR  RF+VVY+ LS +YN R+RV+ 
Sbjct: 31  FYTNTDYLFPLLCFLKWHTYTRVQVLIDICGVDYPSRKRRFEVVYNLLSTRYNSRIRVQT 90

Query: 92  AVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVT 151
           +  E   + S+V ++P A W+EREVWDM+G+ F  HPDLRRILTDYGFEGHPLRKDFP++
Sbjct: 91  SADEVTRISSVVSLFPSAGWWEREVWDMFGVSFINHPDLRRILTDYGFEGHPLRKDFPLS 150

Query: 152 GFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           G+VE+ YDD  K+VV  P+E+ QE R +DF SPWE 
Sbjct: 151 GYVEVRYDDPEKRVVSEPIEMTQEFRYFDFASPWEQ 186


>gi|190571253|ref|YP_001975611.1| NADH dehydrogenase I, C subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018651|ref|ZP_03334459.1| NADH dehydrogenase I, C subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190357525|emb|CAQ54962.1| NADH dehydrogenase I, C subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995602|gb|EEB56242.1| NADH dehydrogenase I, C subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 191

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 80/182 (43%), Positives = 113/182 (62%), Gaps = 2/182 (1%)

Query: 5   IEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD 64
           ++    YI             + G + +     D+ +   FLRDD  C    ++D+ GVD
Sbjct: 1   MDKTAKYIQKK--TKCECIQKNDGTIVIYSALNDIENHLLFLRDDEKCRLELLVDVFGVD 58

Query: 65  FLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFF 124
           +  R  RF+++Y+ LS  +N R+ +K+ + EG    S+  I+  A WFEREV+DMYGI F
Sbjct: 59  YPDREKRFELIYNLLSVVHNIRVHIKLQLCEGDIPLSVAKIFNAASWFEREVFDMYGIEF 118

Query: 125 EGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSP 184
             HPDLRRILTDYGF+GHP+ KDFP+TG+ E+ YD + KKVVY P++L Q+ R +D LSP
Sbjct: 119 SDHPDLRRILTDYGFKGHPMLKDFPLTGYEEVRYDIEAKKVVYNPIDLPQDFRMFDSLSP 178

Query: 185 WE 186
           WE
Sbjct: 179 WE 180


>gi|298370382|ref|ZP_06981698.1| NADH dehydrogenase (ubiquinone), C subunit [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|298281842|gb|EFI23331.1| NADH dehydrogenase (ubiquinone), C subunit [Neisseria sp. oral
           taxon 014 str. F0314]
          Length = 261

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 77/203 (37%), Positives = 119/203 (58%), Gaps = 18/203 (8%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +  I++L D +           ++++GE++++      VS+ + LRD     F  ++DLC
Sbjct: 65  MASIQNLYDTVSRVLGNQASKVISALGEITVECLPEHYVSVMTTLRDHEELHFELLVDLC 124

Query: 62  GVDFLSRSNRFD------VVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWFE 113
           GVD+ +  N         VV   LS K N+R+RV++ V++     V S+V +Y  ADW+E
Sbjct: 125 GVDYSTYKNEAWQGKRFAVVSQLLSVKNNQRIRVRVWVSDDDFPVVESVVPVYNSADWYE 184

Query: 114 REVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELM 173
           RE +D+YGI F  HPDLRRILTDYGF GHP RKDFP++G+VE+ YD++ K+V+Y+PV + 
Sbjct: 185 REAFDLYGIMFNNHPDLRRILTDYGFVGHPFRKDFPISGYVEMRYDEEQKRVIYQPVTIE 244

Query: 174 QEHRDYDFLSPWEGVNSLFAKED 196
                     P E    +  +E+
Sbjct: 245 ----------PREITPRIVREEN 257


>gi|150421605|sp|Q35322|NDUS3_ORYSJ RecName: Full=NADH-ubiquinone oxidoreductase 27 kDa subunit;
           AltName: Full=Complex I-27kD; Short=CI-27kD; AltName:
           Full=NADH dehydrogenase subunit 9
          Length = 190

 Score =  189 bits (479), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 82/156 (52%), Positives = 109/156 (69%)

Query: 32  LDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKI 91
              +   L  L  FL+   +     +ID+CGVD+ SR  RF+VVY+ LS +YN R+RV+ 
Sbjct: 31  FYTNTDYLFPLLCFLKWHTYTRVQVLIDICGVDYPSRKRRFEVVYNLLSTRYNSRIRVQT 90

Query: 92  AVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVT 151
           +  E   + S+V ++P A W+EREVWDM+G+ F  HPDLRRILTDYGFEGHPLRKDFP++
Sbjct: 91  SADEVTRISSVVSLFPSAGWWEREVWDMFGVSFINHPDLRRILTDYGFEGHPLRKDFPLS 150

Query: 152 GFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           G+VE+ YDD  K+VV  P+E+ QE R +DF SPWE 
Sbjct: 151 GYVEVRYDDPEKRVVSEPIEMTQEFRYFDFASPWEQ 186


>gi|316996027|dbj|BAD83545.2| NADH dehydrogenase subunit 9 [Nicotiana tabacum]
          Length = 190

 Score =  189 bits (479), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 85/175 (48%), Positives = 114/175 (65%), Gaps = 1/175 (0%)

Query: 14  NSFSGS-VRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRF 72
            +     V+    S      D +   L  L  FL+   +     +ID+CGVD+ SR  RF
Sbjct: 12  ETLPKKWVKKMERSEHGNRFDTNTDYLFQLLCFLKLHTYTRVQVLIDICGVDYPSRKQRF 71

Query: 73  DVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRR 132
           +VVY+ LS +YN R+RV+ +  E   + S+V ++P A W+EREVWDM+G+ F  HPDLRR
Sbjct: 72  EVVYNLLSIRYNSRIRVQTSADEVTRISSVVSLFPSAGWWEREVWDMFGVSFINHPDLRR 131

Query: 133 ILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           ILTDYGFEGHPLRKDFP++G+VE+ YDD  K+VV  P+E+ QE R +DF SPWE 
Sbjct: 132 ILTDYGFEGHPLRKDFPLSGYVEVRYDDPEKRVVSEPIEMTQEFRYFDFASPWEQ 186


>gi|295311696|ref|YP_003587378.1| NADH dehydrogenase subunit 9 [Cucurbita pepo]
 gi|259156824|gb|ACV96685.1| NADH dehydrogenase subunit 9 [Cucurbita pepo]
          Length = 190

 Score =  189 bits (479), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 86/175 (49%), Positives = 113/175 (64%), Gaps = 1/175 (0%)

Query: 14  NSFSGS-VRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRF 72
            +     V+    S     LD +   L  L  FL+   +     +ID+CGVD+ SR  RF
Sbjct: 12  ETLPKKWVKKRERSEHGNRLDTNTDYLFQLLCFLKLHTYTRVQVLIDICGVDYPSRKRRF 71

Query: 73  DVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRR 132
            VVY+ LS +YN R+RV+    E   + S+V ++P A W+EREVWDM+G+ F  HPDLRR
Sbjct: 72  AVVYNLLSTRYNSRIRVQTRADEVTRISSVVSLFPSAGWWEREVWDMFGVSFINHPDLRR 131

Query: 133 ILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           ILTDYGFEGHPLRKDFP++G+VE+ YDD  K+VV  P+E+ QE R +DF SPWE 
Sbjct: 132 ILTDYGFEGHPLRKDFPLSGYVEVRYDDPEKRVVSEPIEMTQEFRYFDFASPWEQ 186


>gi|124266598|ref|YP_001020602.1| NADH dehydrogenase (quinone) [Methylibium petroleiphilum PM1]
 gi|218534299|sp|A2SFM8|NUOC_METPP RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|124259373|gb|ABM94367.1| NADH dehydrogenase (quinone) [Methylibium petroleiphilum PM1]
          Length = 203

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 84/208 (40%), Positives = 118/208 (56%), Gaps = 22/208 (10%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  KI+ L   +  + +G ++  V   GEL+L V   D +++C+ LRD        +IDL
Sbjct: 1   MDHKIDLLQPALEAALAGKIQALVRDRGELTLTVTAADYLAVCTTLRDHAELKLEQLIDL 60

Query: 61  CGVDFLSRS----------NRFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPG 108
           CG+D+ S             R+ VV H LS   N RLR+K+  A+     VPS+  I+  
Sbjct: 61  CGLDYSSYKDGAGSPYTEGPRYCVVLHLLSVSKNWRLRLKVFCADDGLPVVPSVNEIWAA 120

Query: 109 ADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYR 168
           A+WFERE +D+YGI FEGH DLRRILTDYGF GHP RKDFP TG VE+ YD + ++V+Y+
Sbjct: 121 ANWFEREAFDLYGIVFEGHADLRRILTDYGFIGHPFRKDFPTTGHVEMRYDAEQRRVIYQ 180

Query: 169 PVELMQEHRDYDFLSPWEGVNSLFAKED 196
           PV +           P E    +  +++
Sbjct: 181 PVTIE----------PREITPRIIREDN 198


>gi|73666916|ref|YP_302932.1| NADH (or F420H2) dehydrogenase, subunit C [Ehrlichia canis str.
           Jake]
 gi|72394057|gb|AAZ68334.1| NADH dehydrogenase subunit C [Ehrlichia canis str. Jake]
          Length = 192

 Score =  188 bits (478), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 86/193 (44%), Positives = 121/193 (62%), Gaps = 5/193 (2%)

Query: 1   MVRK---IEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNI 57
           M      I+++  +I  S +  V+  +     L L+ +  D+ S   FLR+D  C F  +
Sbjct: 1   MSDNNNAIDNIIAHINTSIN--VKCTIKDSINLELNSNVNDIYSHILFLRNDTKCKFHIL 58

Query: 58  IDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVW 117
           ID+  +D+ SR  RF+VVY  LS   N R+  K+ + E +S+PSI  ++  A WFEREV+
Sbjct: 59  IDIFAIDYPSRPARFEVVYSLLSIINNIRIFCKVPLQENESIPSITNLFSAAGWFEREVF 118

Query: 118 DMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHR 177
           DMYGI F  +PDLRRILTDYGF GHP+ KDFP+TG+ E+ YD   K+V Y  V L Q+ R
Sbjct: 119 DMYGIIFANNPDLRRILTDYGFSGHPMLKDFPLTGYKEVRYDILKKEVTYEAVNLQQDFR 178

Query: 178 DYDFLSPWEGVNS 190
            +DFLSPW+ V++
Sbjct: 179 SFDFLSPWKEVSN 191


>gi|311104660|ref|YP_003977513.1| NADH-quinone oxidoreductase subunit C [Achromobacter xylosoxidans
           A8]
 gi|310759349|gb|ADP14798.1| NADH-quinone oxidoreductase subunit C [Achromobacter xylosoxidans
           A8]
          Length = 208

 Score =  188 bits (478), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 80/213 (37%), Positives = 118/213 (55%), Gaps = 29/213 (13%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M+ ++E L + +  +    +     ++GEL+L+V      S+C+ LR +    F   IDL
Sbjct: 1   MMTRLETLKNNLQTTLGADI-ALTEALGELTLEVPAQQWFSVCNKLRTEAGLRFETCIDL 59

Query: 61  CGVDFLSRSN----------------RFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSI 102
           CGVD+L+  N                RF VV H +S ++N RLRV+    +     V S+
Sbjct: 60  CGVDYLTWGNGTRQMPEETAAKIHRARFAVVVHLVSIEHNWRLRVRTWAEDDEFPMVASL 119

Query: 103 VGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKV 162
           +  +P   WFERE +D+YGI FEGHPDLRRILTDYGF GHP RKDFP++G VE+ YD + 
Sbjct: 120 MECWPTVGWFEREAFDLYGIVFEGHPDLRRILTDYGFIGHPFRKDFPLSGTVEMRYDPEQ 179

Query: 163 KKVVYRPVELMQEHRDYDFLSPWEGVNSLFAKE 195
           ++V+Y+PV +           P E    +  ++
Sbjct: 180 RRVIYQPVTID----------PREITPRVVRED 202


>gi|152980703|ref|YP_001353154.1| NADH dehydrogenase I chain C [Janthinobacterium sp. Marseille]
 gi|218534294|sp|A6SY07|NUOC_JANMA RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|151280780|gb|ABR89190.1| NADH dehydrogenase I chain C [Janthinobacterium sp. Marseille]
          Length = 198

 Score =  188 bits (477), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 83/204 (40%), Positives = 118/204 (57%), Gaps = 18/204 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  K+E L   + N+    ++    ++GE+++ V   D  S    LRD     F  +IDL
Sbjct: 1   MTIKLELLEAALRNALGDQLQSLTQALGEVTIVVKSHDYASAMRVLRDHADLRFEEMIDL 60

Query: 61  CGVDF------LSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADWF 112
           CGVD+      L    RF VV H LS K+N R+RV++  A+ +     S++ I+  A+W+
Sbjct: 61  CGVDYSTYGDGLWEGPRFAVVSHLLSIKHNWRVRVRVFAADDEMPVVASMIDIWATANWY 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D +GI FEGH DLRRILTDYGF GHP RKDFPV+G+VE+ YD + K+V+Y+PV +
Sbjct: 121 EREAFDFFGILFEGHNDLRRILTDYGFIGHPFRKDFPVSGYVEMRYDPEQKRVIYQPVTI 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKED 196
                      P E V  +  +E 
Sbjct: 181 D----------PRENVPRVIREEQ 194


>gi|68171627|ref|ZP_00544994.1| NADH (or F420H2) dehydrogenase, subunit C [Ehrlichia chaffeensis
           str. Sapulpa]
 gi|88658220|ref|YP_507586.1| NADH dehydrogenase I, C subunit [Ehrlichia chaffeensis str.
           Arkansas]
 gi|67998948|gb|EAM85632.1| NADH (or F420H2) dehydrogenase, subunit C [Ehrlichia chaffeensis
           str. Sapulpa]
 gi|88599677|gb|ABD45146.1| NADH dehydrogenase I, C subunit [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 192

 Score =  188 bits (477), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 83/189 (43%), Positives = 117/189 (61%), Gaps = 2/189 (1%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
              I+++  YI  S +  V   +     L L  D  ++ +  SFLR D  C F  ++D+ 
Sbjct: 5   NNAIDNISTYINTSIN--VECVIKDNITLELHSDVQNIYNHISFLRTDTKCKFHILVDIF 62

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            +D+ +R  RF+V+Y  LS   N R+  K+ + E +S+PSI  I+  A WFEREV+DMYG
Sbjct: 63  AIDYPTRLARFEVIYSLLSIINNIRVSCKVPLQENESIPSITNIFSAAGWFEREVFDMYG 122

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           I F  +PDLRRILTDYGF GHP+ KDFP+TG+ E+ YD   K+V Y  V L Q+ R +DF
Sbjct: 123 IIFANNPDLRRILTDYGFSGHPMLKDFPLTGYKEVRYDISKKEVAYENVNLQQDFRSFDF 182

Query: 182 LSPWEGVNS 190
           LSPW+ + +
Sbjct: 183 LSPWKELKN 191


>gi|9280616|gb|AAF86496.1|AF279449_1 NADH dehydrogenase subunit 9 [Lupinus angustifolius]
          Length = 190

 Score =  187 bits (476), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 84/175 (48%), Positives = 112/175 (64%), Gaps = 1/175 (0%)

Query: 14  NSFSGS-VRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRF 72
            +     V     S      D +   L  L  FL+   +     +ID+CGVD+ SR  RF
Sbjct: 12  ETLPKKWVNKMERSEHGNRFDTNTDYLFQLLCFLKLHTYTRVQVLIDICGVDYPSRKRRF 71

Query: 73  DVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRR 132
           +VVY+ LS +YN R+RV+ +  E   +  +V ++P A W+EREVWDM+G+ F  HPDLRR
Sbjct: 72  EVVYNLLSTRYNSRIRVQTSADEVTRISPVVSLFPSAGWWEREVWDMFGVSFINHPDLRR 131

Query: 133 ILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           ILTDYGFEGHPLRKDFP++G+VE+ YDD  K+VV  P+E+ QE R +DF SPWE 
Sbjct: 132 ILTDYGFEGHPLRKDFPLSGYVEVRYDDPEKRVVSEPIEMTQEFRYFDFASPWEQ 186


>gi|112253858|ref|YP_717114.1| NADH dehydrogenase subunit 9 [Brassica napus]
 gi|37591060|dbj|BAC98862.1| NADH dehydrogenase subunit 9 [Brassica napus]
 gi|80978902|gb|ABB54700.1| NADH dehydrogenase subunit 9 [Brassica oleracea var. botrytis]
          Length = 190

 Score =  187 bits (476), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 85/175 (48%), Positives = 114/175 (65%), Gaps = 1/175 (0%)

Query: 14  NSFSGS-VRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRF 72
            +     V+    S      D +   L  L  FL+   +     +ID+CGVD+ SR  RF
Sbjct: 12  ETLPKKWVKKMERSEHGNRFDTNTDYLFQLLCFLKLHTYTRVQVLIDICGVDYPSRKRRF 71

Query: 73  DVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRR 132
           +VVY+ LS +YN R+RV+ +  E   + S+V ++P A W+EREVWDM+G+ F  HPDLRR
Sbjct: 72  EVVYNLLSTRYNSRIRVQTSADEVTRISSVVSLFPSAGWWEREVWDMFGVSFINHPDLRR 131

Query: 133 ILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           ILTDYGFEGHPLRKDFP++G+VE+ YDD  K+VV  P+E+ QE R +DF SPWE 
Sbjct: 132 ILTDYGFEGHPLRKDFPLSGYVEVRYDDPEKRVVSEPIEMTQEFRYFDFASPWEQ 186


>gi|58698297|ref|ZP_00373214.1| NADH dehydrogenase I, C subunit [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225630973|ref|YP_002727764.1| NADH dehydrogenase I, C subunit [Wolbachia sp. wRi]
 gi|58535170|gb|EAL59252.1| NADH dehydrogenase I, C subunit [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225592954|gb|ACN95973.1| NADH dehydrogenase I, C subunit [Wolbachia sp. wRi]
          Length = 190

 Score =  187 bits (476), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 81/183 (44%), Positives = 114/183 (62%), Gaps = 2/183 (1%)

Query: 5   IEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD 64
           ++    YI               G + +     ++     FLRDD  C F  ++D+ GVD
Sbjct: 1   MDKTAKYIQKK--TKCECIQKDDGIIVIYSTLDEIEKHLFFLRDDEKCRFELLVDIFGVD 58

Query: 65  FLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFF 124
           + +R  RF+++Y+ LS  +N R+ +K+ + E    PS+  I+  A WFEREV+DMYGI F
Sbjct: 59  YPNREKRFELIYNLLSIVHNIRVHIKLQLCESDMPPSVAKIFSTALWFEREVFDMYGIEF 118

Query: 125 EGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSP 184
             HPDLRRILTDYGF+GHP+ KDFP+TG+ E+ YD + KKVVY P++L Q+ R +D LSP
Sbjct: 119 SDHPDLRRILTDYGFKGHPMLKDFPLTGYEEVRYDIETKKVVYNPIDLPQDFRMFDSLSP 178

Query: 185 WEG 187
           WEG
Sbjct: 179 WEG 181


>gi|295311653|ref|YP_003587251.1| NADH dehydrogenase subunit 9 [Citrullus lanatus]
 gi|259156781|gb|ACV96643.1| NADH dehydrogenase subunit 9 [Citrullus lanatus]
          Length = 190

 Score =  187 bits (475), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 86/171 (50%), Positives = 114/171 (66%)

Query: 17  SGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVY 76
              V+    S     LD +   L  L  FL+   +     +ID+CGVD+ SR  RF+VVY
Sbjct: 16  KKWVKKRERSEHGNRLDTNTDYLFQLLCFLKLHTYTRVQVLIDICGVDYPSRKRRFEVVY 75

Query: 77  HFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTD 136
           + LS +YN R+RV+ +  E   + S+V ++P A W+EREVWDM+G+ F  HPDLRRILTD
Sbjct: 76  NLLSTRYNSRIRVQTSADEVTRISSVVSLFPSAGWWEREVWDMFGVSFINHPDLRRILTD 135

Query: 137 YGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           YGFEGHPLRKDFP++G+VE+ YDD  K+VV  P+E+ QE R +DF SPWE 
Sbjct: 136 YGFEGHPLRKDFPLSGYVEVRYDDPEKRVVSEPIEMTQEFRYFDFASPWEQ 186


>gi|9280612|gb|AAF86494.1|AF279447_1 NADH dehydrogenase subunit 9 [Lupinus luteus]
 gi|9280614|gb|AAF86495.1|AF279448_1 NADH dehydrogenase subunit 9 [Lupinus angustifolius]
          Length = 190

 Score =  187 bits (475), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 85/175 (48%), Positives = 113/175 (64%), Gaps = 1/175 (0%)

Query: 14  NSFSGS-VRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRF 72
            +     V     S      D +   L  L  FL+   +     +ID+CGVD+ SR  RF
Sbjct: 12  ETLPKKWVNKMERSEHGNRFDTNTDYLFQLLCFLKLHTYTRVQVLIDICGVDYPSRKRRF 71

Query: 73  DVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRR 132
           +VVY+ LS +YN R+RV+ +  E   + S+V ++P A W+EREVWDM+G+ F  HPDLRR
Sbjct: 72  EVVYNLLSTRYNSRIRVQTSADEVTRISSVVSLFPSAGWWEREVWDMFGVSFINHPDLRR 131

Query: 133 ILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           ILTDYGFEGHPLRKDFP++G+VE+ YDD  K+VV  P+E+ QE R +DF SPWE 
Sbjct: 132 ILTDYGFEGHPLRKDFPLSGYVEVRYDDPEKRVVSEPIEMTQEFRYFDFASPWEQ 186


>gi|332285015|ref|YP_004416926.1| NADH dehydrogenase I chain C [Pusillimonas sp. T7-7]
 gi|330428968|gb|AEC20302.1| NADH dehydrogenase I chain C [Pusillimonas sp. T7-7]
          Length = 203

 Score =  187 bits (475), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 87/208 (41%), Positives = 120/208 (57%), Gaps = 25/208 (12%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           + ++E L   +  +F  S      ++ EL+L+V   + V LC+ LRDD    F   IDLC
Sbjct: 1   MTRLETLHTNLQAAFGESAT-LKLALNELTLEVPAKNWVDLCTALRDDAKLGFDTCIDLC 59

Query: 62  GVDFLSRS------------NRFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYP 107
           G+D+ +               RF VV H LS K+N RLRV++ V       +PS+V ++P
Sbjct: 60  GMDYSAWGAPTYPAAASMHPQRFAVVLHLLSVKHNWRLRVRVYVPNDEFPVIPSLVNVWP 119

Query: 108 GADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVY 167
             +WFERE +D+YGI FEGHPDLRRILTDYGF GHP RKDFP++G VE+ YD + K+VVY
Sbjct: 120 AVNWFEREAFDLYGIVFEGHPDLRRILTDYGFIGHPFRKDFPLSGNVEMRYDTEQKRVVY 179

Query: 168 RPVELMQEHRDYDFLSPWEGVNSLFAKE 195
           +PV +           P E    +  +E
Sbjct: 180 QPVTIE----------PREITPRVVREE 197


>gi|56478178|ref|YP_159767.1| NADH dehydrogenase subunit C [Aromatoleum aromaticum EbN1]
 gi|81356985|sp|Q5P1E8|NUOC_AZOSE RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|56314221|emb|CAI08866.1| NADH dehydrogenase I, chain C [Aromatoleum aromaticum EbN1]
          Length = 201

 Score =  187 bits (475), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 79/204 (38%), Positives = 113/204 (55%), Gaps = 18/204 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  K+E L   + N     VR  V   GE++L+V   D ++    LRD     F  +IDL
Sbjct: 1   MSSKLERLSSSLQNILGAKVRSVVVDRGEVTLEVAAADYLAAAQMLRDHRDLRFEELIDL 60

Query: 61  CGVDFLSRSNRFD------VVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWF 112
            G+D+ +  N         V  H LS  +N R+R++    +       S+VG++PG +W+
Sbjct: 61  TGLDYSAYGNGAWTGKRFAVAVHLLSLTHNWRIRLRAFADDDAFPMFESLVGVWPGVNWY 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D+YG+ F GHPDLRRILTDYGF GHP RKDFPV+G+VE+ YD +  +VVY+PV +
Sbjct: 121 EREAFDLYGLMFAGHPDLRRILTDYGFVGHPFRKDFPVSGYVEMRYDPEQGRVVYQPVTI 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKED 196
                      P E    +  +E+
Sbjct: 181 E----------PRENTPRIVREEN 194


>gi|254805715|ref|YP_003083936.1| NADH dehydrogenase I chain C [Neisseria meningitidis alpha14]
 gi|304389068|ref|ZP_07371112.1| NADH-quinone oxidoreductase subunit C [Neisseria meningitidis ATCC
           13091]
 gi|254669257|emb|CBA08151.1| NADH dehydrogenase I chain C [Neisseria meningitidis alpha14]
 gi|304336941|gb|EFM03131.1| NADH-quinone oxidoreductase subunit C [Neisseria meningitidis ATCC
           13091]
          Length = 197

 Score =  187 bits (474), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 78/203 (38%), Positives = 120/203 (59%), Gaps = 18/203 (8%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +  I++L + +V          ++++GE++++      +S+ + LRD     F  ++DLC
Sbjct: 1   MASIQNLYETVVGVLGDQASKVISALGEITVECLPEHYISVMTALRDHEELHFELLVDLC 60

Query: 62  GVDFLSRSNRFD------VVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWFE 113
           GVD+ +  N         VV   LS K N+R+RV++ V++     V S+V IY  ADW+E
Sbjct: 61  GVDYSTYKNEAWQGKRFAVVSQLLSVKNNQRIRVRVWVSDDDFPVVESVVDIYNSADWYE 120

Query: 114 REVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELM 173
           RE +DMYGI F  HPDLRRILTDYGF GHP RKDFP++G+VE+ YD++ K+V+Y+PV + 
Sbjct: 121 REAFDMYGIMFNNHPDLRRILTDYGFVGHPFRKDFPISGYVEMRYDEEQKRVIYQPVTIE 180

Query: 174 QEHRDYDFLSPWEGVNSLFAKED 196
                     P E    +  +E+
Sbjct: 181 ----------PREITPRIVREEN 193


>gi|218767067|ref|YP_002341579.1| NADH dehydrogenase subunit C [Neisseria meningitidis Z2491]
 gi|241760669|ref|ZP_04758761.1| NADH-quinone oxidoreductase, c subunit [Neisseria flavescens SK114]
 gi|261379578|ref|ZP_05984151.1| NADH dehydrogenase, C subunit [Neisseria subflava NJ9703]
 gi|11134094|sp|Q9JX80|NUOC_NEIMA RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|121051075|emb|CAM07345.1| NADH dehydrogenase I chain C [Neisseria meningitidis Z2491]
 gi|241318850|gb|EER55376.1| NADH-quinone oxidoreductase, c subunit [Neisseria flavescens SK114]
 gi|284798052|gb|EFC53399.1| NADH dehydrogenase, C subunit [Neisseria subflava NJ9703]
 gi|319411274|emb|CBY91681.1| NADH-quinone oxidoreductase chain C (NADH dehydrogenase I, chain C;
           NDH-1, chain C) [Neisseria meningitidis WUE 2594]
 gi|325129041|gb|EGC51891.1| NADH:ubiquinone dehydrogenase, C subunit [Neisseria meningitidis
           N1568]
          Length = 197

 Score =  187 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 78/203 (38%), Positives = 120/203 (59%), Gaps = 18/203 (8%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +  I++L + +V          ++++GE++++      +S+ + LRD     F  ++DLC
Sbjct: 1   MASIQNLYETVVGVLGDQASKVISALGEITVECLPEHYISVMTALRDHEELHFELLVDLC 60

Query: 62  GVDFLSRSNRFD------VVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWFE 113
           GVD+ +  N         VV   LS K N+R+RV++ V++     V S+V IY  ADW+E
Sbjct: 61  GVDYSTYKNEVWQGKRFAVVSQLLSVKNNQRIRVRVWVSDDDFPVVESVVDIYNSADWYE 120

Query: 114 REVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELM 173
           RE +DMYGI F  HPDLRRILTDYGF GHP RKDFP++G+VE+ YD++ K+V+Y+PV + 
Sbjct: 121 REAFDMYGIMFNNHPDLRRILTDYGFVGHPFRKDFPISGYVEMRYDEEQKRVIYQPVTIE 180

Query: 174 QEHRDYDFLSPWEGVNSLFAKED 196
                     P E    +  +E+
Sbjct: 181 ----------PREITPRIVREEN 193


>gi|296313745|ref|ZP_06863686.1| NADH dehydrogenase, C subunit [Neisseria polysaccharea ATCC 43768]
 gi|296839668|gb|EFH23606.1| NADH dehydrogenase, C subunit [Neisseria polysaccharea ATCC 43768]
          Length = 197

 Score =  187 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 80/203 (39%), Positives = 122/203 (60%), Gaps = 18/203 (8%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +  I++L + +V          ++++GE++++      +S+ + LRD     F  ++DLC
Sbjct: 1   MASIQNLYETVVGVLGDQASKVISALGEITVECLPEHYISVMTTLRDHEELHFELLVDLC 60

Query: 62  GVDF------LSRSNRFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWFE 113
           GVD+      L +  RF VV   LS K N+R+RV++ V++     V S+V IY  ADW+E
Sbjct: 61  GVDYSTYKNELWQGKRFAVVSQLLSVKNNQRIRVRVWVSDDDFPVVESVVDIYNSADWYE 120

Query: 114 REVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELM 173
           RE +DMYGI F  HPDLRRILTDYGF GHP RKDFP++G+VE+ YD++ K+V+Y+PV + 
Sbjct: 121 REAFDMYGIMFNNHPDLRRILTDYGFVGHPFRKDFPISGYVEMRYDEEQKRVIYQPVTIE 180

Query: 174 QEHRDYDFLSPWEGVNSLFAKED 196
                     P E    +  +E+
Sbjct: 181 ----------PREITPRIVREEN 193


>gi|99034973|ref|ZP_01314776.1| hypothetical protein Wendoof_01000399 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 190

 Score =  187 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 81/183 (44%), Positives = 114/183 (62%), Gaps = 2/183 (1%)

Query: 5   IEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD 64
           ++    YI               G + +     ++     FLRDD  C F  ++D+ GVD
Sbjct: 1   MDKTAKYIQKK--TKCECIQKDDGIIVIYSTLDEIEKYLFFLRDDKKCRFELLVDIFGVD 58

Query: 65  FLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFF 124
           + +R  RF+++Y+ LS  +N R+ +K+ + E    PS+  I+  A WFEREV+DMYGI F
Sbjct: 59  YPNREKRFELIYNLLSIVHNIRVHIKLQLCESDMPPSVAKIFSTALWFEREVFDMYGIEF 118

Query: 125 EGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSP 184
             HPDLRRILTDYGF+GHP+ KDFP+TG+ E+ YD + KKVVY P++L Q+ R +D LSP
Sbjct: 119 SDHPDLRRILTDYGFKGHPMLKDFPLTGYEEVRYDIETKKVVYNPIDLPQDFRMFDSLSP 178

Query: 185 WEG 187
           WEG
Sbjct: 179 WEG 181


>gi|42520926|ref|NP_966841.1| NADH dehydrogenase I, C subunit [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|225631315|ref|ZP_03787990.1| NADH dehydrogenase I, C subunit [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|42410667|gb|AAS14775.1| NADH dehydrogenase I, C subunit [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|225590990|gb|EEH12197.1| NADH dehydrogenase I, C subunit [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 190

 Score =  187 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 81/183 (44%), Positives = 114/183 (62%), Gaps = 2/183 (1%)

Query: 5   IEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD 64
           ++    YI               G + +     ++     FLRDD  C F  ++D+ GVD
Sbjct: 1   MDKTAKYIQKK--TKCECIQKDDGIIVIYSTLDEIEKYLFFLRDDEKCRFELLVDIFGVD 58

Query: 65  FLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFF 124
           + +R  RF+++Y+ LS  +N R+ +K+ + E    PS+  I+  A WFEREV+DMYGI F
Sbjct: 59  YPNREKRFELIYNLLSIVHNIRVHIKLQLCESDMPPSVAKIFSTALWFEREVFDMYGIEF 118

Query: 125 EGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSP 184
             HPDLRRILTDYGF+GHP+ KDFP+TG+ E+ YD + KKVVY P++L Q+ R +D LSP
Sbjct: 119 SDHPDLRRILTDYGFKGHPMLKDFPLTGYEEVRYDIETKKVVYNPIDLPQDFRMFDSLSP 178

Query: 185 WEG 187
           WEG
Sbjct: 179 WEG 181


>gi|308388463|gb|ADO30783.1| NADH dehydrogenase I chain C [Neisseria meningitidis alpha710]
          Length = 197

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 79/203 (38%), Positives = 120/203 (59%), Gaps = 18/203 (8%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +  I++L + +V          ++++GE++++      VS+ + LRD     F  ++DLC
Sbjct: 1   MASIQNLYETVVGVLGDQASKVISALGEITVECLPEHYVSVMTTLRDHEELHFELLVDLC 60

Query: 62  GVDFLSRSNRFD------VVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWFE 113
           GVD+ +  N         VV   LS K N+R+RV++ V++     V S+V IY  ADW+E
Sbjct: 61  GVDYSTYKNEVWQGKRFAVVSQLLSVKNNQRIRVRVWVSDDDFPVVESVVDIYNSADWYE 120

Query: 114 REVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELM 173
           RE +DMYGI F  HPDLRRILTDYGF GHP RKDFP++G+VE+ YD++ K+V+Y+PV + 
Sbjct: 121 REAFDMYGIMFNNHPDLRRILTDYGFVGHPFRKDFPISGYVEMRYDEEQKRVIYQPVTIE 180

Query: 174 QEHRDYDFLSPWEGVNSLFAKED 196
                     P E    +  +E+
Sbjct: 181 ----------PREITPRIVREEN 193


>gi|171463528|ref|YP_001797641.1| NADH (or F420H2) dehydrogenase, subunit C [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|218534306|sp|B1XUK0|NUOC_POLNS RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|171193066|gb|ACB44027.1| NADH (or F420H2) dehydrogenase, subunit C [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 199

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 73/181 (40%), Positives = 107/181 (59%), Gaps = 8/181 (4%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  ++  L   +       ++    ++GE+++ V           +RDDP   F  +IDL
Sbjct: 1   MSERLIQLAANLKKVLGKRIQSVEIALGEVTVVVYADTYFESAMLMRDDPSLAFEQLIDL 60

Query: 61  CGVDFLSR------SNRFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWF 112
           CGVD+           RF VV H LS ++N RLRV++   +     V S+  ++  A+WF
Sbjct: 61  CGVDYQDFRDGAWAGQRFGVVSHLLSLEHNWRLRVRVFAPDDSYPLVASVSPVWNSANWF 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D+YGI F+GH DLRRILTDYGF GHP RKDFP++G VE+ YD ++K+V+Y+PV +
Sbjct: 121 EREAFDLYGILFDGHDDLRRILTDYGFIGHPFRKDFPISGNVEMRYDPELKRVIYQPVTI 180

Query: 173 M 173
            
Sbjct: 181 E 181


>gi|299530744|ref|ZP_07044159.1| NADH (or F420H2) dehydrogenase, subunit C [Comamonas testosteroni
           S44]
 gi|298721260|gb|EFI62202.1| NADH (or F420H2) dehydrogenase, subunit C [Comamonas testosteroni
           S44]
          Length = 190

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 77/193 (39%), Positives = 112/193 (58%), Gaps = 18/193 (9%)

Query: 12  IVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSR--- 68
           +  +    VR    + GE++++V     + +   LR+ P C F  ++DLCGVD+ +    
Sbjct: 2   VTAALGDRVRSVTLAYGEVTVEVSADKYLDVMQILRNAPDCQFEMLLDLCGVDYSTYAEV 61

Query: 69  ---SNRFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWFEREVWDMYGIF 123
                RF VV H +S   N+RLRV++  A+     V SI  I+  A+WFERE +D++GI 
Sbjct: 62  GKDGPRFAVVSHLMSLTLNQRLRVRVYCADDDFPVVASINPIWNSANWFEREAFDLFGIV 121

Query: 124 FEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLS 183
           FEGH DLRRILTDYGF GHP RKDFP++G VE+ YD + ++VVY+PV +           
Sbjct: 122 FEGHEDLRRILTDYGFIGHPFRKDFPLSGHVEMRYDAEQQRVVYQPVTIE---------- 171

Query: 184 PWEGVNSLFAKED 196
           P E    +  +E+
Sbjct: 172 PREITPRIIREEN 184


>gi|253998385|ref|YP_003050448.1| NADH (or F420H2) dehydrogenase subunit C [Methylovorus sp. SIP3-4]
 gi|313200461|ref|YP_004039119.1| NADH (or f420h2) dehydrogenase subunit c [Methylovorus sp. MP688]
 gi|253985064|gb|ACT49921.1| NADH (or F420H2) dehydrogenase, subunit C [Methylovorus sp. SIP3-4]
 gi|312439777|gb|ADQ83883.1| NADH (or F420H2) dehydrogenase, subunit C [Methylovorus sp. MP688]
          Length = 198

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 75/181 (41%), Positives = 115/181 (63%), Gaps = 8/181 (4%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  +++ L   I ++    +   V+ VGEL+++    +++ +C  LRD P   F  +IDL
Sbjct: 1   MSSRLQQLTANIESALGDKLGRLVSHVGELTIECSVANMLDVCLILRDHPSLKFEQLIDL 60

Query: 61  CGVDFLSRSNRFD------VVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWF 112
           CGVD+               VYHFLS   N+R+R+++  A+     +P++V ++P A+WF
Sbjct: 61  CGVDYAEYGEGSWSGLRFATVYHFLSISLNQRVRLRVFAADDDFPVLPTLVDMWPVANWF 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D+YGI +EGHPDLRR+LTDYGF GHP RKDFP+ G VE+ YD + ++V+Y+PV +
Sbjct: 121 ERESFDLYGIMYEGHPDLRRLLTDYGFVGHPFRKDFPMIGNVEMRYDPEQQRVIYQPVTI 180

Query: 173 M 173
            
Sbjct: 181 D 181


>gi|261391775|emb|CAX49230.1| NADH-quinone oxidoreductase chain C (NADH dehydrogenase I, chain C;
           NDH-1, chain C) [Neisseria meningitidis 8013]
          Length = 197

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 78/203 (38%), Positives = 120/203 (59%), Gaps = 18/203 (8%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +  I++L + +V          ++++GE++++      VS+ + LRD     F  ++DLC
Sbjct: 1   MASIQNLYETVVGVLGDQASKVISALGEITVECLPEHYVSVMTTLRDHEELHFELLVDLC 60

Query: 62  GVDFLSRSNRFD------VVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWFE 113
           GVD+ +  N         VV   LS + N+R+RV++ V++     V S+V IY  ADW+E
Sbjct: 61  GVDYSTYKNEVWQGKRFAVVSQLLSVQNNQRIRVRVWVSDDDFPVVESVVDIYNSADWYE 120

Query: 114 REVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELM 173
           RE +DMYGI F  HPDLRRILTDYGF GHP RKDFP++G+VE+ YD++ K+V+Y+PV + 
Sbjct: 121 REAFDMYGIMFNNHPDLRRILTDYGFVGHPFRKDFPISGYVEMRYDEEQKRVIYQPVTIE 180

Query: 174 QEHRDYDFLSPWEGVNSLFAKED 196
                     P E    +  +E+
Sbjct: 181 ----------PREITPRIVREEN 193


>gi|218679173|ref|ZP_03527070.1| NADH dehydrogenase subunit C [Rhizobium etli CIAT 894]
          Length = 120

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 77/119 (64%), Positives = 91/119 (76%)

Query: 81  PKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFE 140
           PK N R+RVK+A  E   VPS   ++PGADWFERE WDMYG+ F GHPDLRRILTDYGFE
Sbjct: 1   PKQNLRIRVKVATDEDTPVPSACAVHPGADWFERETWDMYGVLFTGHPDLRRILTDYGFE 60

Query: 141 GHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEGVNSLFAKEDSKD 199
           GHPLRKDFP TGFVE+ YDD  K+VVY PVEL QE R++DF+SPWEG + +   ++   
Sbjct: 61  GHPLRKDFPTTGFVEVRYDDAAKRVVYEPVELKQEFRNFDFMSPWEGTDYVLPGDEKAK 119


>gi|41019517|sp|Q95748|NDUS3_ARATH RecName: Full=NADH-ubiquinone oxidoreductase 27 kDa subunit;
           AltName: Full=Complex I-27kD; Short=CI-27kD; AltName:
           Full=NADH dehydrogenase subunit 9
          Length = 190

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 84/175 (48%), Positives = 114/175 (65%), Gaps = 1/175 (0%)

Query: 14  NSFSGS-VRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRF 72
            +     V+    S      D +   L  L  FL+   +     +ID+CGVD+ SR  RF
Sbjct: 12  ETLPKKWVKKMERSEHGNRFDTNTDYLFQLLCFLKLHTYTRVQVLIDICGVDYPSRKRRF 71

Query: 73  DVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRR 132
           +VVY+ LS +YN R+RV+ +  E   + S+V ++P A W+EREVWDM+G+ F  HPDLRR
Sbjct: 72  EVVYNLLSTRYNSRIRVQTSADEVTRISSVVSLFPSAGWWEREVWDMFGVSFINHPDLRR 131

Query: 133 ILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           ILTDYGFEGHPLRKDFP++G+V++ YDD  K+VV  P+E+ QE R +DF SPWE 
Sbjct: 132 ILTDYGFEGHPLRKDFPLSGYVQVRYDDPEKRVVSEPIEMTQEFRYFDFASPWEQ 186


>gi|241763290|ref|ZP_04761347.1| NADH (or F420H2) dehydrogenase, subunit C [Acidovorax delafieldii
           2AN]
 gi|241367565|gb|EER61852.1| NADH (or F420H2) dehydrogenase, subunit C [Acidovorax delafieldii
           2AN]
          Length = 202

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 75/199 (37%), Positives = 108/199 (54%), Gaps = 18/199 (9%)

Query: 6   EDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDF 65
           E L D I        R    ++ E+++ V   D       LRD   C F  +IDLCGVD+
Sbjct: 9   EKLKDAIAAVLGAKARQITVALEEVTVVVAAADYRDAMQLLRDSEACRFEQLIDLCGVDY 68

Query: 66  LSRSNRFD------VVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWFEREVW 117
            S +++        VV H LS   N+R+RVK+   +     V S+  ++  A+W+ERE +
Sbjct: 69  SSYADKVHEGARYGVVSHLLSVSLNQRVRVKVFCPDDDFPVVASVSDLWNSANWYEREAF 128

Query: 118 DMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHR 177
           D++GI F+GH DLRRILTDYGF GHP RKDFP++G VE+ YD + ++VVY PV +     
Sbjct: 129 DLFGIVFDGHNDLRRILTDYGFIGHPFRKDFPLSGHVEMRYDTERRRVVYEPVSIE---- 184

Query: 178 DYDFLSPWEGVNSLFAKED 196
                 P E    +  ++ 
Sbjct: 185 ------PREITPRIIREDK 197


>gi|161870821|ref|YP_001599994.1| NADH dehydrogenase subunit C [Neisseria meningitidis 053442]
 gi|218534321|sp|A9M3E0|NUOC_NEIM0 RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|161596374|gb|ABX74034.1| NADH dehydrogenase I chain C [Neisseria meningitidis 053442]
          Length = 197

 Score =  185 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 76/203 (37%), Positives = 120/203 (59%), Gaps = 18/203 (8%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +  I++L + +V          ++++GE++++      +S+ + LRD     F  ++DLC
Sbjct: 1   MASIQNLYETVVGVLGDQASKVISALGEITVECLPEHYISVMTALRDHEELHFELLVDLC 60

Query: 62  GVDFLSRSNRFD------VVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWFE 113
           GVD+ +  N         VV   LS K N+R+RV++ V++     V S+V +Y  ADW+E
Sbjct: 61  GVDYSTYKNEVWQGKRFAVVSQLLSVKNNQRIRVRVWVSDDDFPVVESVVPVYNSADWYE 120

Query: 114 REVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELM 173
           RE +D+YGI F  HPDLRRILTDYGF GHP RKDFP++G+VE+ YD++ K+V+Y+PV + 
Sbjct: 121 REAFDLYGIMFNNHPDLRRILTDYGFVGHPFRKDFPISGYVEMRYDEEQKRVIYQPVTIE 180

Query: 174 QEHRDYDFLSPWEGVNSLFAKED 196
                     P E    +  +E+
Sbjct: 181 ----------PREITPRIVREEN 193


>gi|89900288|ref|YP_522759.1| NADH (or F420H2) dehydrogenase subunit C [Rhodoferax ferrireducens
           T118]
 gi|122479524|sp|Q21YC5|NUOC_RHOFD RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|89345025|gb|ABD69228.1| NADH (or F420H2) dehydrogenase, subunit C [Rhodoferax ferrireducens
           T118]
          Length = 202

 Score =  185 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 75/199 (37%), Positives = 114/199 (57%), Gaps = 18/199 (9%)

Query: 6   EDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDF 65
           + +  ++  +    +  +V  + EL++ VD    +     LRDDP+C F  ++DLCGVD+
Sbjct: 9   QSIKVHVEAALGDLLISSVLRLDELTVVVDGAHYLQAAKILRDDPNCRFEQLMDLCGVDY 68

Query: 66  ------LSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADWFEREVW 117
                      R+ VV H LS   N+R+R+K+   +       S+  ++  A+WFERE +
Sbjct: 69  STYKDQPQTGLRYCVVSHLLSVSLNQRVRLKVFAPDDNLPVVQSLCDVWSSANWFEREAF 128

Query: 118 DMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHR 177
           D++GI FEGH DLRRILTDYGF GHP RKDFPV+G VE+ YD ++K+VVY+PV +     
Sbjct: 129 DLFGIVFEGHADLRRILTDYGFVGHPFRKDFPVSGHVEMRYDAELKRVVYQPVTIE---- 184

Query: 178 DYDFLSPWEGVNSLFAKED 196
                 P E    +  +++
Sbjct: 185 ------PREITPRIIREDN 197


>gi|226939458|ref|YP_002794531.1| NADH-quinone oxidoreductase [Laribacter hongkongensis HLHK9]
 gi|254767811|sp|C1DCA5|NUOC_LARHH RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|226714384|gb|ACO73522.1| NADH-quinone oxidoreductase [Laribacter hongkongensis HLHK9]
          Length = 195

 Score =  185 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 78/204 (38%), Positives = 109/204 (53%), Gaps = 20/204 (9%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   ++ L   + +     +  A    GEL++      +   C  LRD     F   IDL
Sbjct: 1   MASSLDALKARVESLLGDHLESATIDRGELTIVCSASSIAVSCQLLRD--QAGFDQCIDL 58

Query: 61  CGVDF------LSRSNRFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWF 112
           CG+D+      L    RF VV H +S + N+RLRV+    +     VPS++ ++   +W+
Sbjct: 59  CGMDYSTYRDGLHDRPRFAVVLHLMSVQNNQRLRVRFFAPDDDFPVVPSLIDVWASVNWY 118

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +DMYGI FEGHPDLRRILTDYGF GHP RKDFPV+G VE+ YD    +V+Y+PV +
Sbjct: 119 EREAFDMYGIVFEGHPDLRRILTDYGFVGHPFRKDFPVSGHVEMRYDPTEGRVIYQPVTI 178

Query: 173 MQEHRDYDFLSPWEGVNSLFAKED 196
                      P E    +  +E+
Sbjct: 179 E----------PREITPRIIREEN 192


>gi|325203360|gb|ADY98813.1| NADH:ubiquinone dehydrogenase, C subunit [Neisseria meningitidis
           M01-240355]
          Length = 197

 Score =  185 bits (470), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 75/180 (41%), Positives = 114/180 (63%), Gaps = 8/180 (4%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +  I++L + +V          ++++GE++++      +S+ + LRD     F  ++DLC
Sbjct: 1   MASIQNLYETVVGVLGDQASKVISALGEITVECLPEHYISVMTALRDHEELHFELLVDLC 60

Query: 62  GVDFLSRSNRFD------VVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWFE 113
           GVD+ +  N         VV   LS K N+R+RV++ V++     V S+V IY  ADW+E
Sbjct: 61  GVDYSTYKNEVWQGKRFAVVSQLLSVKNNQRIRVRVWVSDDDFPVVESVVDIYNSADWYE 120

Query: 114 REVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELM 173
           RE +DMYGI F  HPDLRRILTDYGF GHP RKDFP++G+VE+ YD++ K+V+Y+PV + 
Sbjct: 121 REAFDMYGIMFNNHPDLRRILTDYGFVGHPFRKDFPISGYVEMRYDEEQKRVIYQPVTIE 180


>gi|319638816|ref|ZP_07993574.1| NADH-quinone oxidoreductase subunit C [Neisseria mucosa C102]
 gi|317399720|gb|EFV80383.1| NADH-quinone oxidoreductase subunit C [Neisseria mucosa C102]
          Length = 197

 Score =  185 bits (470), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 79/203 (38%), Positives = 121/203 (59%), Gaps = 18/203 (8%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +  I++L + +V  F       ++++GE++++      +S+ + LRD     F  ++DLC
Sbjct: 1   MASIQNLYETVVGVFGEQAGKVISALGEITVECLPEHYISVMTALRDHEDLHFELLVDLC 60

Query: 62  GVDFLSRSNRFD------VVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWFE 113
           GVD+ +  N         VV   LS K N+R+RV++ V++     V S+V IY  ADW+E
Sbjct: 61  GVDYSTYKNEVWQGKRFAVVSQLLSIKNNQRIRVRVWVSDDDFPVVESVVDIYNSADWYE 120

Query: 114 REVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELM 173
           RE +DMYGI F  HPDLRRILTDYGF GHP RKDFP++G+VE+ YD++ K+V+Y+PV + 
Sbjct: 121 REAFDMYGIMFNNHPDLRRILTDYGFVGHPFRKDFPISGYVEMRYDEEQKRVIYQPVTIE 180

Query: 174 QEHRDYDFLSPWEGVNSLFAKED 196
                     P E    +  +E+
Sbjct: 181 ----------PREITPRIVREEN 193


>gi|15676167|ref|NP_273299.1| NADH dehydrogenase subunit C [Neisseria meningitidis MC58]
 gi|11134102|sp|Q9K1C1|NUOC_NEIMB RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|7225465|gb|AAF40697.1| NADH dehydrogenase I, C subunit [Neisseria meningitidis MC58]
 gi|316985171|gb|EFV64123.1| NADH-quinone oxidoreductase subunit C [Neisseria meningitidis
           H44/76]
 gi|325141079|gb|EGC63582.1| NADH:ubiquinone dehydrogenase, C subunit [Neisseria meningitidis
           CU385]
 gi|325199446|gb|ADY94901.1| NADH:ubiquinone dehydrogenase, C subunit [Neisseria meningitidis
           H44/76]
          Length = 197

 Score =  185 bits (470), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 78/203 (38%), Positives = 119/203 (58%), Gaps = 18/203 (8%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +  I+DL + +           ++++GE++++      +S+ + LRD     F  ++DLC
Sbjct: 1   MASIQDLYETVSRVLGNQAGKVISALGEITVECLPEHYISVMTALRDHEELHFELLVDLC 60

Query: 62  GVDFLSRSNRFD------VVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWFE 113
           GVD+ +  N         VV   LS K N+R+RV++ V++     V S+V IY  ADW+E
Sbjct: 61  GVDYSTYKNEAWQGKRFAVVSQLLSVKNNQRIRVRVWVSDDDFPVVESVVDIYNSADWYE 120

Query: 114 REVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELM 173
           RE +DMYGI F  HPDLRRILTDYGF GHP RKDFP++G+VE+ YD++ K+V+Y+PV + 
Sbjct: 121 REAFDMYGIMFNNHPDLRRILTDYGFVGHPFRKDFPISGYVEMRYDEEQKRVIYQPVTIE 180

Query: 174 QEHRDYDFLSPWEGVNSLFAKED 196
                     P E    +  +E+
Sbjct: 181 ----------PREITPRIVREEN 193


>gi|254674106|emb|CBA09890.1| respiratory-chain NADH dehydrogenase, 30 kDa subunit [Neisseria
           meningitidis alpha275]
          Length = 197

 Score =  185 bits (470), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 77/203 (37%), Positives = 119/203 (58%), Gaps = 18/203 (8%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +  I++L + +           ++++GE++++      +S+ + LRD     F  ++DLC
Sbjct: 1   MASIQNLYETVSRVLGNQAGKVISALGEITVECLPEHYISVMTALRDHEELHFELLVDLC 60

Query: 62  GVDFLSRSNRFD------VVYHFLSPKYNRRLRVKIAVAEGK--SVPSIVGIYPGADWFE 113
           GVD+ +  N         VV   LS K N+R+RV++ V++     V S+V IY  ADW+E
Sbjct: 61  GVDYSTYKNEVWQGKRFAVVSQLLSVKNNQRIRVRVWVSDDNFPVVESVVDIYNSADWYE 120

Query: 114 REVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELM 173
           RE +DMYGI F  HPDLRRILTDYGF GHP RKDFP++G+VE+ YD++ K+V+Y+PV + 
Sbjct: 121 REAFDMYGIMFNNHPDLRRILTDYGFVGHPFRKDFPISGYVEMRYDEEQKRVIYQPVTIE 180

Query: 174 QEHRDYDFLSPWEGVNSLFAKED 196
                     P E    +  +E+
Sbjct: 181 ----------PREITPRIVREEN 193


>gi|145589232|ref|YP_001155829.1| NADH (or F420H2) dehydrogenase, subunit C [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|218534319|sp|A4SXQ1|NUOC_POLSQ RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|145047638|gb|ABP34265.1| NADH dehydrogenase subunit C [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 199

 Score =  185 bits (470), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 77/181 (42%), Positives = 108/181 (59%), Gaps = 8/181 (4%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  ++  L   +       V+    ++GE+++ V+          +RDDP   F  +IDL
Sbjct: 1   MSDRLVHLAANLEKVLGKRVQSIEIALGEVTVVVNADTYFESAMLMRDDPSLAFEQLIDL 60

Query: 61  CGVDFL------SRSNRFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWF 112
           CGVD+           RF VV H LS ++N RLRV++   +     V SI  ++  A+WF
Sbjct: 61  CGVDYQDFRDGAWNGQRFGVVSHLLSLEHNWRLRVRVFAPDDSYPLVASITPVWSSANWF 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D+YGI FEGH DLRRILTDYGF GHP RKDFP++G VE+ YD ++K+VVY+PV +
Sbjct: 121 EREAFDLYGIIFEGHEDLRRILTDYGFIGHPFRKDFPISGNVEMRYDPELKRVVYQPVTI 180

Query: 173 M 173
            
Sbjct: 181 E 181


>gi|157828357|ref|YP_001494599.1| NADH dehydrogenase subunit C [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|157800838|gb|ABV76091.1| NADH dehydrogenase subunit C [Rickettsia rickettsii str. 'Sheila
           Smith']
          Length = 242

 Score =  185 bits (469), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 76/233 (32%), Positives = 122/233 (52%), Gaps = 36/233 (15%)

Query: 4   KIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGV 63
            ++ L + +    +  +         L+  ++   L+     L++     F  + DL G 
Sbjct: 2   TLDKLIERLAAKSNILITPITVK-DYLAYKIEPNFLLPFLKALKESEELRFTLLTDLFGA 60

Query: 64  DFLSRS-----------------------------------NRFDVVYHFLSPKYNRRLR 88
           DF   +                                    RF+VVY+ LS K N+RL 
Sbjct: 61  DFPQNNVVNSVGLGHKEQGAKPITNRRTTSDNVGESKSIDYKRFEVVYNLLSLKLNKRLI 120

Query: 89  VKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDF 148
           +K+ ++E +++PS + I+  A W+EREV+DMYG+ FEG+ D RRILTDY FEGHPLRKDF
Sbjct: 121 IKVYISEQETIPSAMSIFSAACWYEREVYDMYGVNFEGNDDKRRILTDYEFEGHPLRKDF 180

Query: 149 PVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEGVNSLFAKEDSKDDM 201
           P+TG+ ++ YD+K+KKV Y PV+L  E+R++DF S W   + +   ++   ++
Sbjct: 181 PLTGYTQVKYDEKLKKVAYEPVDLDIEYREFDFSSHWHSPSYVLPGDEKATNV 233


>gi|319794666|ref|YP_004156306.1| NADH (or f420h2) dehydrogenase, subunit c [Variovorax paradoxus
           EPS]
 gi|315597129|gb|ADU38195.1| NADH (or F420H2) dehydrogenase, subunit C [Variovorax paradoxus
           EPS]
          Length = 203

 Score =  185 bits (469), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 75/197 (38%), Positives = 109/197 (55%), Gaps = 18/197 (9%)

Query: 8   LGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLS 67
           L   I  +     +    ++GE+++ V   D +   + LRD P C F  +IDLCG+D+  
Sbjct: 11  LRATITETLGAKAKSVTLALGEVTVVVSAADYIEAATLLRDAPGCRFEQLIDLCGMDYSD 70

Query: 68  R------SNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADWFEREVWDM 119
                    R+ VV H LS   N+R+R+K+           S+  ++  A WFERE +D+
Sbjct: 71  YREGEWQGERYGVVSHLLSVTLNQRVRLKVFAPNEDLPVVDSLQPVWNAATWFEREAFDL 130

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDY 179
           YGI F+GH DLRRILTDYGF GHP RKDFPV+G VE+ YD++ K+VVY+PV +       
Sbjct: 131 YGIVFDGHDDLRRILTDYGFIGHPFRKDFPVSGHVEMRYDEEQKRVVYQPVSIE------ 184

Query: 180 DFLSPWEGVNSLFAKED 196
               P E    +  +++
Sbjct: 185 ----PREITPRVIREDN 197


>gi|325135046|gb|EGC57674.1| NADH:ubiquinone dehydrogenase, C subunit [Neisseria meningitidis
           M13399]
 gi|325145307|gb|EGC67585.1| NADH:ubiquinone dehydrogenase, C subunit [Neisseria meningitidis
           M01-240013]
 gi|325205328|gb|ADZ00781.1| NADH:ubiquinone dehydrogenase, C subunit [Neisseria meningitidis
           M04-240196]
          Length = 197

 Score =  185 bits (469), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 77/203 (37%), Positives = 119/203 (58%), Gaps = 18/203 (8%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +  I++L + ++          ++++GE++++      +S  + LRD     F  ++DLC
Sbjct: 1   MASIQNLYETVIGVLGNQAGKVISALGEITVECLPEHYISAMTALRDHEDLHFELLVDLC 60

Query: 62  GVDFLSRSNRFD------VVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWFE 113
           GVD+ +  N         VV   LS K N+R+RV++ V++     V S+V IY  ADW+E
Sbjct: 61  GVDYSTYKNEVWQGKRFAVVSQLLSVKNNQRIRVRVWVSDDDFPVVESVVDIYNSADWYE 120

Query: 114 REVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELM 173
           RE +DMYGI F  HPDLRRILTDYGF GHP RKDFP++G+VE+ YD++ K+V+Y+PV + 
Sbjct: 121 REAFDMYGIMFNNHPDLRRILTDYGFVGHPFRKDFPISGYVEMRYDEEQKRVIYQPVTIE 180

Query: 174 QEHRDYDFLSPWEGVNSLFAKED 196
                     P E    +  +E+
Sbjct: 181 ----------PREITPRIVREEN 193


>gi|225077018|ref|ZP_03720217.1| hypothetical protein NEIFLAOT_02070 [Neisseria flavescens
           NRL30031/H210]
 gi|224951575|gb|EEG32784.1| hypothetical protein NEIFLAOT_02070 [Neisseria flavescens
           NRL30031/H210]
          Length = 197

 Score =  185 bits (469), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 77/203 (37%), Positives = 118/203 (58%), Gaps = 18/203 (8%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +  I++L + +           ++++GE++++      +S+ + LRD     F  ++DLC
Sbjct: 1   MASIQNLYETVSRVLGNQAGKVISALGEITVECLPEHYISVMTALRDHEELHFELLVDLC 60

Query: 62  GVDFLSRSNRFD------VVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWFE 113
           GVD+ +  N         VV   LS K N+R+RV++ V++     V S+V IY  ADW+E
Sbjct: 61  GVDYSTYKNEVWQGKRFAVVSQLLSVKNNQRIRVRVWVSDDDFPVVESVVDIYNSADWYE 120

Query: 114 REVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELM 173
           RE +DMYGI F  HPDLRRILTDYGF GHP RKDFP++G+VE+ YD+  K+V+Y+PV + 
Sbjct: 121 REAFDMYGIMFNNHPDLRRILTDYGFVGHPFRKDFPISGYVEMRYDEAQKRVIYQPVTIE 180

Query: 174 QEHRDYDFLSPWEGVNSLFAKED 196
                     P E    +  +E+
Sbjct: 181 ----------PREITPRIVREEN 193


>gi|261400471|ref|ZP_05986596.1| NADH-quinone oxidoreductase chain 5 [Neisseria lactamica ATCC
           23970]
 gi|269209730|gb|EEZ76185.1| NADH-quinone oxidoreductase chain 5 [Neisseria lactamica ATCC
           23970]
 gi|309379801|emb|CBX21577.1| unnamed protein product [Neisseria lactamica Y92-1009]
 gi|325137070|gb|EGC59666.1| NADH:ubiquinone dehydrogenase, C subunit [Neisseria meningitidis
           M0579]
 gi|325202928|gb|ADY98382.1| NADH:ubiquinone dehydrogenase, C subunit [Neisseria meningitidis
           M01-240149]
 gi|325207274|gb|ADZ02726.1| NADH:ubiquinone dehydrogenase, C subunit [Neisseria meningitidis
           NZ-05/33]
          Length = 197

 Score =  185 bits (469), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 77/203 (37%), Positives = 119/203 (58%), Gaps = 18/203 (8%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +  I++L + +           ++++GE++++      +S+ + LRD     F  ++DLC
Sbjct: 1   MASIQNLYETVSRVLGNQAGKVISALGEITVECLPEHYISVMTALRDHEELHFELLVDLC 60

Query: 62  GVDFLSRSNRFD------VVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWFE 113
           GVD+ +  N         VV   LS K N+R+RV++ V++     V S+V IY  ADW+E
Sbjct: 61  GVDYSTYKNEVWQGKRFAVVSQLLSVKNNQRIRVRVWVSDDDFPVVESVVDIYNSADWYE 120

Query: 114 REVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELM 173
           RE +DMYGI F  HPDLRRILTDYGF GHP RKDFP++G+VE+ YD++ K+V+Y+PV + 
Sbjct: 121 REAFDMYGIMFNNHPDLRRILTDYGFVGHPFRKDFPISGYVEMRYDEEQKRVIYQPVTIE 180

Query: 174 QEHRDYDFLSPWEGVNSLFAKED 196
                     P E    +  +E+
Sbjct: 181 ----------PREITPRIVREEN 193


>gi|34580592|ref|ZP_00142072.1| NADH dehydrogenase I chain C [Rickettsia sibirica 246]
 gi|28261977|gb|EAA25481.1| NADH dehydrogenase I chain C [Rickettsia sibirica 246]
          Length = 242

 Score =  184 bits (468), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 79/233 (33%), Positives = 123/233 (52%), Gaps = 36/233 (15%)

Query: 4   KIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGV 63
            ++ L + +    S  +         L+  ++   L+ L   L++     F  + DL G 
Sbjct: 2   TLDKLIERLAAKSSILITPITVK-DYLAYKIEPNFLLPLLKALKESEELRFTLLTDLFGA 60

Query: 64  DFLSRS-----------------------------------NRFDVVYHFLSPKYNRRLR 88
           DF   +                                    RF+VVY+ LS K N+RL 
Sbjct: 61  DFPQNNVVNSVGLGHKEQGAKPITNRSTTSDNVGESKSIDYKRFEVVYNLLSLKLNKRLI 120

Query: 89  VKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDF 148
           +K+ ++E +++PS + I+  A W+EREV+DMYG+ FEG+ D RRILTDY FEGHPLRKDF
Sbjct: 121 IKVYISEKETIPSAMNIFSAACWYEREVYDMYGVNFEGNDDKRRILTDYEFEGHPLRKDF 180

Query: 149 PVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEGVNSLFAKEDSKDDM 201
           P+TG+ ++ YD+K+KKV Y PV+L  E+R++DF S W   + +   ++   D+
Sbjct: 181 PLTGYTQVKYDEKLKKVAYEPVDLDIEYREFDFSSHWHSPSYVLPGDEKATDV 233


>gi|319943350|ref|ZP_08017632.1| NADH-quinone oxidoreductase subunit C [Lautropia mirabilis ATCC
           51599]
 gi|319743165|gb|EFV95570.1| NADH-quinone oxidoreductase subunit C [Lautropia mirabilis ATCC
           51599]
          Length = 202

 Score =  184 bits (468), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 70/181 (38%), Positives = 109/181 (60%), Gaps = 10/181 (5%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M    E L   + ++    +     ++GE+++++       +C  LRDDP   F  +IDL
Sbjct: 1   MST--ETLVAALQDALGERILGLSTALGEVTIEISGDCHHIVCERLRDDPRLGFEVMIDL 58

Query: 61  CGVDFLSRSNRFD------VVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWF 112
           CG+D+ +  N         VV   LS ++N R+R++    +     V ++  ++P A+WF
Sbjct: 59  CGIDYSTYGNAEWDAPRFAVVMQLLSIRHNHRVRLRSFCMDDEAPMVETVTDLWPCANWF 118

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D++GI F GHPDLRRILTDYGF GHP RKDFP++G+ E+ YD+K ++VVY+PV +
Sbjct: 119 EREAFDLFGIVFSGHPDLRRILTDYGFIGHPFRKDFPISGYTEMRYDEKQRRVVYQPVTI 178

Query: 173 M 173
            
Sbjct: 179 E 179


>gi|229586622|ref|YP_002845123.1| NADH dehydrogenase subunit C [Rickettsia africae ESF-5]
 gi|228021672|gb|ACP53380.1| NADH dehydrogenase I chain C [Rickettsia africae ESF-5]
          Length = 242

 Score =  184 bits (468), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 79/233 (33%), Positives = 122/233 (52%), Gaps = 36/233 (15%)

Query: 4   KIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGV 63
            ++ L + +    S  +         L+  ++   L+     L++     F  + DL G 
Sbjct: 2   TLDKLIERLAAKSSILITPITVK-DYLAYKIEPNFLLPFLKALKESEELRFTLLTDLFGA 60

Query: 64  DFLSRS-----------------------------------NRFDVVYHFLSPKYNRRLR 88
           DF   +                                    RF+VVY+ LS K N+RL 
Sbjct: 61  DFPQNNVVNSVGLGHKEQGAKPITNRRTTSDNVGESKSIDYKRFEVVYNLLSLKLNKRLI 120

Query: 89  VKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDF 148
           +K+ ++E +++PS + I+  A W+EREV+DMYGI FEG+ D RRILTDY FEGHPLRKDF
Sbjct: 121 IKVYISEKETIPSAMNIFSAACWYEREVYDMYGINFEGNDDKRRILTDYEFEGHPLRKDF 180

Query: 149 PVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEGVNSLFAKEDSKDDM 201
           P+TG+ ++ YD+K+KKV Y PV+L  E+R++DF S W   + +   ++   D+
Sbjct: 181 PLTGYTQVKYDEKLKKVAYEPVDLDIEYREFDFSSHWHSPSYVLPGDEKATDV 233


>gi|15892406|ref|NP_360120.1| NADH dehydrogenase subunit C [Rickettsia conorii str. Malish 7]
 gi|81528332|sp|Q92ID7|NUOC_RICCN RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|15619557|gb|AAL03021.1| NADH dehydrogenase I chain C [Rickettsia conorii str. Malish 7]
          Length = 242

 Score =  184 bits (467), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 78/233 (33%), Positives = 122/233 (52%), Gaps = 36/233 (15%)

Query: 4   KIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGV 63
            ++ L + +    S  +         L+  ++   L+     L++     F  + DL G 
Sbjct: 2   TLDKLIEKLAAKSSILITPITVK-DYLAYKIEPNFLLPFLKALKESEELRFTLLTDLFGA 60

Query: 64  DFLSRS-----------------------------------NRFDVVYHFLSPKYNRRLR 88
           DF   +                                    RF+VVY+ LS K N+RL 
Sbjct: 61  DFPQNNVVNSVGLGHKEQGAKPITNRRTTSDNVGESKSIDYKRFEVVYNLLSLKLNKRLI 120

Query: 89  VKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDF 148
           +K+ ++E +++PS + I+  A W+EREV+DMYG+ FEG+ D RRILTDY FEGHPLRKDF
Sbjct: 121 IKVYISEKETIPSAMNIFSAACWYEREVYDMYGVNFEGNDDKRRILTDYEFEGHPLRKDF 180

Query: 149 PVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEGVNSLFAKEDSKDDM 201
           P+TG+ ++ YD+K+KKV Y PV+L  E+R++DF S W   + +   ++   D+
Sbjct: 181 PLTGYTQVKYDEKLKKVAYEPVDLDIEYREFDFSSHWHSPSYVLPGDEKATDV 233


>gi|198284344|ref|YP_002220665.1| NADH (or F420H2) dehydrogenase subunit C [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218666570|ref|YP_002427006.1| NADH-quinone oxidoreductase, C subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|218534236|sp|B5EN69|NUOC_ACIF5 RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|226737321|sp|B7J7U3|NUOC_ACIF2 RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|198248865|gb|ACH84458.1| NADH (or F420H2) dehydrogenase, subunit C [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218518783|gb|ACK79369.1| NADH-quinone oxidoreductase, C subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 202

 Score =  184 bits (467), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 78/180 (43%), Positives = 109/180 (60%), Gaps = 7/180 (3%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   +E+L  ++ +    ++R A    GEL++++      + C  LRDD  C F  ++D+
Sbjct: 1   MTDALENLRQHLSDELGATLRTAHLDRGELTVELSREGFPAACLLLRDDVACAFDLLVDV 60

Query: 61  CGVDF------LSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPS-IVGIYPGADWFE 113
           CGVD+      L    RF VVYH LS K+ +RLRV+I   +   +   +V ++  A+WFE
Sbjct: 61  CGVDYSAYGEGLWEGPRFAVVYHLLSLKHRQRLRVRIFADDDLPIVPSVVEVWAAANWFE 120

Query: 114 REVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELM 173
           RE +D+YGI F+GHPDLRRILTDYGF GHP RKDFP+ G VE+ YD    +VVY P    
Sbjct: 121 REAFDLYGILFDGHPDLRRILTDYGFVGHPFRKDFPLVGTVEMRYDADQGRVVYEPTRTE 180


>gi|325130971|gb|EGC53698.1| NADH:ubiquinone dehydrogenase, C subunit [Neisseria meningitidis
           OX99.30304]
          Length = 197

 Score =  184 bits (467), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 79/203 (38%), Positives = 119/203 (58%), Gaps = 18/203 (8%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +  I+DL + +           ++++GE++++      VS+ + LRD     F  ++DLC
Sbjct: 1   MASIQDLYETVSRVLGNQAGKVISALGEITVECLPEHYVSVMTTLRDHEELHFELLVDLC 60

Query: 62  GVDFLSRSNRFD------VVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWFE 113
           GVD+ +  N         VV   LS K N+R+RV++ V++     V S+V IY  ADW+E
Sbjct: 61  GVDYSTYKNEAWRGKRFAVVSQLLSVKNNQRIRVRVWVSDDDFPVVESVVNIYNSADWYE 120

Query: 114 REVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELM 173
           RE +DMYGI F  HPDLRRILTDYGF GHP RKDFP++G+VE+ YD++ K+V+Y+PV + 
Sbjct: 121 REAFDMYGIMFNNHPDLRRILTDYGFVGHPFRKDFPISGYVEMRYDEEQKRVIYQPVTIE 180

Query: 174 QEHRDYDFLSPWEGVNSLFAKED 196
                     P E    +  +E+
Sbjct: 181 ----------PREITPRIVREEN 193


>gi|254670955|emb|CBA07621.1| respiratory-chain NADH dehydrogenase, 30 kDa subunit [Neisseria
           meningitidis alpha153]
          Length = 197

 Score =  184 bits (467), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 77/203 (37%), Positives = 118/203 (58%), Gaps = 18/203 (8%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +  I++L + +           ++++GE++++      +S+   LRD     F  ++DLC
Sbjct: 1   MASIQNLYETVSRVLGNQASKVISALGEITVECLPEHYISVMIALRDHEELHFELLVDLC 60

Query: 62  GVDFLSRSNRFD------VVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWFE 113
           GVD+ +  N         VV   LS K N+R+RV++ V++     V S+V IY  ADW+E
Sbjct: 61  GVDYSTYKNEVWQGKRFAVVSQLLSVKNNQRIRVRVWVSDDDFPVVESVVDIYNSADWYE 120

Query: 114 REVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELM 173
           RE +DMYGI F  HPDLRRILTDYGF GHP RKDFP++G+VE+ YD++ K+V+Y+PV + 
Sbjct: 121 REAFDMYGIMFNNHPDLRRILTDYGFVGHPFRKDFPISGYVEMRYDEEQKRVIYQPVTIE 180

Query: 174 QEHRDYDFLSPWEGVNSLFAKED 196
                     P E    +  +E+
Sbjct: 181 ----------PREITPRIVREEN 193


>gi|238651036|ref|YP_002916893.1| NADH dehydrogenase subunit C [Rickettsia peacockii str. Rustic]
 gi|238625134|gb|ACR47840.1| NADH dehydrogenase subunit C [Rickettsia peacockii str. Rustic]
          Length = 242

 Score =  184 bits (467), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 77/233 (33%), Positives = 122/233 (52%), Gaps = 36/233 (15%)

Query: 4   KIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGV 63
            ++ L + +    S  +         L+  ++   L+     L++     F  + DL G 
Sbjct: 2   TLDKLIERLAAKSSILITPITVK-DYLAYKIEPNFLLPFLKALKESEELRFTLLTDLFGA 60

Query: 64  DFLSRS-----------------------------------NRFDVVYHFLSPKYNRRLR 88
           DF   +                                    RF+VVY+ LS K N+RL 
Sbjct: 61  DFPQNNVVNSVGLGHKEQGAKPITNRRTTSDNVGESKSIDYKRFEVVYNLLSLKLNKRLI 120

Query: 89  VKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDF 148
           +K+ ++E +++PS + I+  A W+EREV+DMYG+ FEG+ D RRILTDY FEGHPLRKDF
Sbjct: 121 IKVYISEKETIPSAMNIFSAACWYEREVYDMYGVNFEGNDDKRRILTDYEFEGHPLRKDF 180

Query: 149 PVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEGVNSLFAKEDSKDDM 201
           P+TG+ ++ YD+K+KKV Y PV+L  E+R++DF S W   + +   ++   ++
Sbjct: 181 PLTGYTQVKYDEKLKKVAYEPVDLDIEYREFDFSSHWHSPSYVLPGDEKATNV 233


>gi|229328252|ref|YP_002860265.1| NADH dehydrogenase subunit 9 [Megaceros aenigmaticus]
 gi|186695221|gb|ACC86788.1| NADH dehydrogenase subunit 9 [Nothoceros aenigmaticus]
          Length = 191

 Score =  184 bits (466), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 78/186 (41%), Positives = 112/186 (60%), Gaps = 2/186 (1%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M +++      ++ +    +     S  E  L  +   L  L  F +   +  F  +ID+
Sbjct: 1   MDKQL--FLKSLIATLPKRIHQFKTSKHENILYTNPDYLFELLWFPKHHTNTRFQVLIDI 58

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
            GVD+ SR  RF+VV++  S +YN R+RV+ +V E   + S+VGI+P A W+EREVWDM+
Sbjct: 59  RGVDYPSRKRRFEVVHNSPSIRYNSRIRVESSVNEITPICSVVGIFPSAGWWEREVWDMF 118

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           G +   HPD RRI  DYG EGH LRKD P++G+ E+ YDD  K+VV  P+E+ QE R +D
Sbjct: 119 GAYSSNHPDSRRISIDYGSEGHLLRKDLPLSGYFEVRYDDSEKRVVSEPIEMTQESRYFD 178

Query: 181 FLSPWE 186
           F SPWE
Sbjct: 179 FASPWE 184


>gi|313669284|ref|YP_004049568.1| NADH dehydrogenase I chain C [Neisseria lactamica ST-640]
 gi|313006746|emb|CBN88216.1| NADH dehydrogenase I chain C [Neisseria lactamica 020-06]
          Length = 197

 Score =  184 bits (466), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 76/203 (37%), Positives = 118/203 (58%), Gaps = 18/203 (8%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +  I++L + +           ++++ E++++      +S+ + LRD     F  ++DLC
Sbjct: 1   MASIQNLYETVSRVLGNQAGKVISALDEITVECLPEHYISVMTALRDHEELHFELLVDLC 60

Query: 62  GVDFLSRSNRFD------VVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWFE 113
           GVD+ +  N         VV   LS K N+R+RV++ V++     V S+V IY  ADW+E
Sbjct: 61  GVDYSTYKNEVWQGKRFAVVSQLLSVKNNQRIRVRVWVSDDDFPVVESVVDIYNSADWYE 120

Query: 114 REVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELM 173
           RE +DMYGI F  HPDLRRILTDYGF GHP RKDFP++G+VE+ YD++ K+V+Y+PV + 
Sbjct: 121 REAFDMYGIMFNNHPDLRRILTDYGFVGHPFRKDFPISGYVEMRYDEEQKRVIYQPVTIE 180

Query: 174 QEHRDYDFLSPWEGVNSLFAKED 196
                     P E    +  +E+
Sbjct: 181 ----------PREITPRIVREEN 193


>gi|237746749|ref|ZP_04577229.1| NADH-quinone oxidoreductase subunit C/D [Oxalobacter formigenes
           HOxBLS]
 gi|229378100|gb|EEO28191.1| NADH-quinone oxidoreductase subunit C/D [Oxalobacter formigenes
           HOxBLS]
          Length = 200

 Score =  183 bits (465), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 86/204 (42%), Positives = 116/204 (56%), Gaps = 20/204 (9%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M R   +L D +   F   ++  + S GE+++ V+      +   LRDD    F  +IDL
Sbjct: 1   MQRNPVELADRLRAVFGAKLKDLIESFGEVTIVVNKAVYPDVMGQLRDDSRFRFEELIDL 60

Query: 61  CGVDFLSRSN--------RFDVVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGAD 110
           CGVD+    N        RF VV H LS  +N RLRV++   +      PSI+ I+P A+
Sbjct: 61  CGVDYAGYGNEEKGLKGKRFAVVVHLLSLAFNCRLRVRVFADDDAMPEVPSIMAIWPAAN 120

Query: 111 WFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPV 170
           WFERE +D+YGI F+GHPDLRRILTDYGF G+P RKDFPV G+VE+ YD+K K+VVY+PV
Sbjct: 121 WFEREAFDLYGILFKGHPDLRRILTDYGFVGYPFRKDFPVQGYVEMRYDEKQKRVVYQPV 180

Query: 171 ELMQEHRDYDFLSPWEGVNSLFAK 194
            +           P E    +   
Sbjct: 181 TIE----------PREITPRVIRD 194


>gi|121634115|ref|YP_974360.1| NADH dehydrogenase subunit C [Neisseria meningitidis FAM18]
 gi|218534322|sp|A1KRS4|NUOC_NEIMF RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|120865821|emb|CAM09553.1| NADH dehydrogenase I chain C [Neisseria meningitidis FAM18]
 gi|325131611|gb|EGC54318.1| NADH:ubiquinone dehydrogenase, C subunit [Neisseria meningitidis
           M6190]
 gi|325139134|gb|EGC61680.1| NADH:ubiquinone dehydrogenase, C subunit [Neisseria meningitidis
           ES14902]
 gi|325143084|gb|EGC65431.1| NADH:ubiquinone dehydrogenase, C subunit [Neisseria meningitidis
           961-5945]
 gi|325143154|gb|EGC65500.1| NADH:ubiquinone dehydrogenase, C subunit [Neisseria meningitidis
           961-5945]
 gi|325197529|gb|ADY92985.1| NADH:ubiquinone dehydrogenase, C subunit [Neisseria meningitidis
           G2136]
          Length = 197

 Score =  183 bits (465), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 76/203 (37%), Positives = 119/203 (58%), Gaps = 18/203 (8%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +  I++L + +           ++++GE++++      +S+ + LRD     F  ++DLC
Sbjct: 1   MASIQNLYETVSRVLGNQAGKVISALGEITVECLPEHYISVMTALRDHEELHFELLVDLC 60

Query: 62  GVDFLSRSNRFD------VVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWFE 113
           GVD+ +  N         VV   LS K N+R+RV++ V++     V S+V IY  ADW+E
Sbjct: 61  GVDYSTYKNEAWQGKRFAVVSQLLSVKNNQRIRVRVWVSDDDFPVVESVVDIYNSADWYE 120

Query: 114 REVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELM 173
           RE +D+YGI F  HPDLRRILTDYGF GHP RKDFP++G+VE+ YD++ K+V+Y+PV + 
Sbjct: 121 REAFDLYGIMFNNHPDLRRILTDYGFVGHPFRKDFPISGYVEMRYDEEQKRVIYQPVTIE 180

Query: 174 QEHRDYDFLSPWEGVNSLFAKED 196
                     P E    +  +E+
Sbjct: 181 ----------PREITPRIVREEN 193


>gi|332528753|ref|ZP_08404730.1| NADH (or F420H2) dehydrogenase, subunit C [Hylemonella gracilis
           ATCC 19624]
 gi|332041819|gb|EGI78168.1| NADH (or F420H2) dehydrogenase, subunit C [Hylemonella gracilis
           ATCC 19624]
          Length = 202

 Score =  183 bits (465), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 73/199 (36%), Positives = 113/199 (56%), Gaps = 18/199 (9%)

Query: 6   EDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDF 65
           E L + +  +    VR     + E++++V   D  +    LRD P C F  +IDLCGVD+
Sbjct: 9   EALKNAVTAALGELVRRIEVRLDEVTVEVAPKDYRTAAMLLRDAPGCQFEQLIDLCGVDY 68

Query: 66  LSRSNRFD------VVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWFEREVW 117
            +  +         VV H LS   N+R+R+K+   +     + S+  ++  A+W+ERE +
Sbjct: 69  SAYGDGAWEGARYAVVSHLLSVSLNQRVRLKVYATDDEFPVLDSLTSVWAAANWYEREAF 128

Query: 118 DMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHR 177
           D++GI FEGH DLRRILTDYGF GHP RKDFP++G VE+ YD ++++VVY+PV +     
Sbjct: 129 DLFGIVFEGHDDLRRILTDYGFIGHPFRKDFPLSGHVEMRYDAELQRVVYQPVSIE---- 184

Query: 178 DYDFLSPWEGVNSLFAKED 196
                 P E    +  +++
Sbjct: 185 ------PREITPRIIREDN 197


>gi|59802070|ref|YP_208782.1| NADH dehydrogenase subunit C [Neisseria gonorrhoeae FA 1090]
 gi|194099645|ref|YP_002002776.1| NADH dehydrogenase subunit C [Neisseria gonorrhoeae NCCP11945]
 gi|239999842|ref|ZP_04719766.1| NADH dehydrogenase subunit C [Neisseria gonorrhoeae 35/02]
 gi|240015001|ref|ZP_04721914.1| NADH dehydrogenase subunit C [Neisseria gonorrhoeae DGI18]
 gi|240017449|ref|ZP_04723989.1| NADH dehydrogenase subunit C [Neisseria gonorrhoeae FA6140]
 gi|240081588|ref|ZP_04726131.1| NADH dehydrogenase subunit C [Neisseria gonorrhoeae FA19]
 gi|240113870|ref|ZP_04728360.1| NADH dehydrogenase subunit C [Neisseria gonorrhoeae MS11]
 gi|240116601|ref|ZP_04730663.1| NADH dehydrogenase subunit C [Neisseria gonorrhoeae PID18]
 gi|240118825|ref|ZP_04732887.1| NADH dehydrogenase subunit C [Neisseria gonorrhoeae PID1]
 gi|240122070|ref|ZP_04735032.1| NADH dehydrogenase subunit C [Neisseria gonorrhoeae PID24-1]
 gi|240124364|ref|ZP_04737320.1| NADH dehydrogenase subunit C [Neisseria gonorrhoeae PID332]
 gi|240126576|ref|ZP_04739462.1| NADH dehydrogenase subunit C [Neisseria gonorrhoeae SK-92-679]
 gi|240129041|ref|ZP_04741702.1| NADH dehydrogenase subunit C [Neisseria gonorrhoeae SK-93-1035]
 gi|254494625|ref|ZP_05107796.1| NADH-quinone oxidoreductase subunit C [Neisseria gonorrhoeae 1291]
 gi|260439638|ref|ZP_05793454.1| NADH dehydrogenase subunit C [Neisseria gonorrhoeae DGI2]
 gi|268595652|ref|ZP_06129819.1| NADH-quinone oxidoreductase subunit C [Neisseria gonorrhoeae 35/02]
 gi|268597684|ref|ZP_06131851.1| NADH-quinone oxidoreductase subunit C [Neisseria gonorrhoeae FA19]
 gi|268599936|ref|ZP_06134103.1| NADH-quinone oxidoreductase subunit C [Neisseria gonorrhoeae MS11]
 gi|268602270|ref|ZP_06136437.1| NADH-quinone oxidoreductase subunit C [Neisseria gonorrhoeae PID18]
 gi|268604536|ref|ZP_06138703.1| NADH-quinone oxidoreductase subunit C [Neisseria gonorrhoeae PID1]
 gi|268682991|ref|ZP_06149853.1| NADH-quinone oxidoreductase subunit C [Neisseria gonorrhoeae
           PID332]
 gi|268685156|ref|ZP_06152018.1| NADH-quinone oxidoreductase subunit C [Neisseria gonorrhoeae
           SK-92-679]
 gi|268687419|ref|ZP_06154281.1| NADH-quinone oxidoreductase subunit C [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291042879|ref|ZP_06568620.1| NADH-quinone oxidoreductase subunit C [Neisseria gonorrhoeae DGI2]
 gi|293398110|ref|ZP_06642315.1| NADH-quinone oxidoreductase subunit C [Neisseria gonorrhoeae F62]
 gi|75355477|sp|Q5F617|NUOC_NEIG1 RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|218534297|sp|B4RPI2|NUOC_NEIG2 RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|59718965|gb|AAW90370.1| putative NADH dehydrogenase I chain C [Neisseria gonorrhoeae FA
           1090]
 gi|193934935|gb|ACF30759.1| NADH dehydrogenase subunit C [Neisseria gonorrhoeae NCCP11945]
 gi|226513665|gb|EEH63010.1| NADH-quinone oxidoreductase subunit C [Neisseria gonorrhoeae 1291]
 gi|268549041|gb|EEZ44459.1| NADH-quinone oxidoreductase subunit C [Neisseria gonorrhoeae 35/02]
 gi|268551472|gb|EEZ46491.1| NADH-quinone oxidoreductase subunit C [Neisseria gonorrhoeae FA19]
 gi|268584067|gb|EEZ48743.1| NADH-quinone oxidoreductase subunit C [Neisseria gonorrhoeae MS11]
 gi|268586401|gb|EEZ51077.1| NADH-quinone oxidoreductase subunit C [Neisseria gonorrhoeae PID18]
 gi|268588667|gb|EEZ53343.1| NADH-quinone oxidoreductase subunit C [Neisseria gonorrhoeae PID1]
 gi|268623275|gb|EEZ55675.1| NADH-quinone oxidoreductase subunit C [Neisseria gonorrhoeae
           PID332]
 gi|268625440|gb|EEZ57840.1| NADH-quinone oxidoreductase subunit C [Neisseria gonorrhoeae
           SK-92-679]
 gi|268627703|gb|EEZ60103.1| NADH-quinone oxidoreductase subunit C [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291013313|gb|EFE05279.1| NADH-quinone oxidoreductase subunit C [Neisseria gonorrhoeae DGI2]
 gi|291611373|gb|EFF40443.1| NADH-quinone oxidoreductase subunit C [Neisseria gonorrhoeae F62]
 gi|317165130|gb|ADV08671.1| NADH dehydrogenase subunit C [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 197

 Score =  183 bits (465), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 75/203 (36%), Positives = 118/203 (58%), Gaps = 18/203 (8%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +  I++L + +V          ++++GE++++      +S+ + L D     F  ++DLC
Sbjct: 1   MASIQNLYETVVGVLGDQAGKVISALGEITVECLPEHYISVMTALHDHEDLHFELLVDLC 60

Query: 62  GVDFLSRSNRFD------VVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWFE 113
           GVD+ +  N         VV   LS K N+R+RV++ V++     V S+  IY  ADW+E
Sbjct: 61  GVDYSTYKNEAWQGKRFAVVSQLLSVKNNQRIRVRVWVSDDDFPVVESVADIYNSADWYE 120

Query: 114 REVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELM 173
           RE +D+YGI F  HPDLRRILTDYGF GHP RKDFP++G+VE+ YD++ K+V+Y+PV + 
Sbjct: 121 REAFDLYGIMFNNHPDLRRILTDYGFVGHPFRKDFPISGYVEMRYDEEQKRVIYQPVTIE 180

Query: 174 QEHRDYDFLSPWEGVNSLFAKED 196
                     P E    +  +E+
Sbjct: 181 ----------PREITPRIVREEN 193


>gi|255067283|ref|ZP_05319138.1| NADH-quinone oxidoreductase chain 5 [Neisseria sicca ATCC 29256]
 gi|255048434|gb|EET43898.1| NADH-quinone oxidoreductase chain 5 [Neisseria sicca ATCC 29256]
          Length = 197

 Score =  183 bits (465), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 77/203 (37%), Positives = 119/203 (58%), Gaps = 18/203 (8%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +  I++L D +           ++++GE++++      VS+ + LRD     F  ++DLC
Sbjct: 1   MASIQNLYDTVSRVLGNQASKVISALGEVTVECLPEHYVSVMTTLRDHEELHFELLVDLC 60

Query: 62  GVDFLSRSNRFD------VVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWFE 113
           GVD+ +  N         VV   LS K N+R+RV++ V++     V S+V +Y  ADW+E
Sbjct: 61  GVDYSTYKNEAWQGKRFAVVSQLLSVKNNQRIRVRVWVSDDDFPVVESVVPVYNSADWYE 120

Query: 114 REVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELM 173
           RE +D+YGI F  HPDLRRILTDYGF GHP RKDFP++G+VE+ YD++ K+V+Y+PV + 
Sbjct: 121 REAFDLYGIMFNNHPDLRRILTDYGFVGHPFRKDFPISGYVEMRYDEEQKRVIYQPVTIE 180

Query: 174 QEHRDYDFLSPWEGVNSLFAKED 196
                     P E    +  +E+
Sbjct: 181 ----------PREITPRIVREEN 193


>gi|289619332|emb|CBI53615.1| unnamed protein product [Sordaria macrospora]
          Length = 266

 Score =  183 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 72/189 (38%), Positives = 111/189 (58%), Gaps = 24/189 (12%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
              +   G +++      ++                          D+    +  + D+ 
Sbjct: 76  ADNLHKYGSWLMGCLPKYIQQFS-----------------------DNTAAEYTQVSDIT 112

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VDF ++  RF+VVY+ LS ++N R+RVK  V E   VPSI  +Y GA+W+EREV+D++G
Sbjct: 113 AVDFPTKDQRFEVVYNLLSVRHNSRIRVKTYVDEVSPVPSITPLYNGANWYEREVYDLFG 172

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD- 180
           +FF GHPDLRRI+TDYGF+GHPLRKDFP+TG+ E+ +D++ K++V  P+E+ Q  R+++ 
Sbjct: 173 VFFTGHPDLRRIMTDYGFDGHPLRKDFPMTGYTEIRWDEEKKRIVTEPLEMTQAFRNFEG 232

Query: 181 FLSPWEGVN 189
             S WE V 
Sbjct: 233 GSSAWEQVG 241


>gi|38605724|sp|P80261|NDUS3_SOLTU RecName: Full=NADH-ubiquinone oxidoreductase 27 kDa subunit;
           AltName: Full=Complex I-27 kDa; Short=CI-27kD; AltName:
           Full=NADH dehydrogenase subunit 9
          Length = 190

 Score =  183 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 84/175 (48%), Positives = 114/175 (65%), Gaps = 1/175 (0%)

Query: 14  NSFSGS-VRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRF 72
            +     V+    S      D +   L  L  F++   +     +ID+CGVD+ SR  RF
Sbjct: 12  ETLPKKWVKKMERSEHGNRFDTNTDYLFQLLCFMKLHTYTRVQVLIDICGVDYPSRKQRF 71

Query: 73  DVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRR 132
           +VVY+ LS +YN R+RV+ +  E   + S+V ++P A W+EREVWDM+G+F   HPDLRR
Sbjct: 72  EVVYNLLSIRYNSRIRVQTSADEVTRISSVVSLFPSAGWWEREVWDMFGVFSINHPDLRR 131

Query: 133 ILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           ILTDYGFEGHPLRKDFP++G+VE+ YDD  K+VV  P+E+ QE R +DF SPWE 
Sbjct: 132 ILTDYGFEGHPLRKDFPLSGYVEVRYDDPEKRVVSEPIEMTQEFRYFDFASPWEQ 186


>gi|237748889|ref|ZP_04579369.1| NADH-quinone oxidoreductase subunit C/D [Oxalobacter formigenes
           OXCC13]
 gi|229380251|gb|EEO30342.1| NADH-quinone oxidoreductase subunit C/D [Oxalobacter formigenes
           OXCC13]
          Length = 200

 Score =  183 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 80/206 (38%), Positives = 113/206 (54%), Gaps = 20/206 (9%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M R    L + +   F   +        E++L +   D + +   L+  P   F  +IDL
Sbjct: 1   MRRHPAQLIEILRAVFGERITHLSEDFSEVTLVIGKSDYLDVMKTLKGAPELQFAELIDL 60

Query: 61  CGVDFLSR--------SNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGAD 110
           CG+D+             RF VV H LS ++N RLRV++   + +    PSIV I+P A+
Sbjct: 61  CGIDYAGYNNDPNGLEGKRFAVVSHLLSLEFNCRLRVRVFAEDEQMPSVPSIVDIWPSAN 120

Query: 111 WFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPV 170
           WFERE +D+YGI F+GHPDLRRILTDYGF GHP RKDFP+ G+VE+ YD++ K+VVY+PV
Sbjct: 121 WFEREAFDLYGILFDGHPDLRRILTDYGFVGHPFRKDFPIQGYVEMRYDEEQKRVVYQPV 180

Query: 171 ELMQEHRDYDFLSPWEGVNSLFAKED 196
            +           P E    +   + 
Sbjct: 181 TIE----------PREITPRVIRDDK 196


>gi|300113267|ref|YP_003759842.1| NADH /F420H2 dehydrogenase subunit C [Nitrosococcus watsonii C-113]
 gi|299539204|gb|ADJ27521.1| NADH (or F420H2) dehydrogenase, subunit C [Nitrosococcus watsonii
           C-113]
          Length = 230

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 78/204 (38%), Positives = 109/204 (53%), Gaps = 31/204 (15%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + DL   +   F G +       GEL+++V      ++C  LRD+    F  +IDL
Sbjct: 1   MANGVADLRRRVEGRFDGEIGSCRLDRGELTIEVPRESYFAVCKTLRDEEDFGFEQLIDL 60

Query: 61  CGVDFLSRSN------------------------------RFDVVYHFLSPKYNRRLRVK 90
           CGVD+L                                  RF VV H LS ++N RLRV+
Sbjct: 61  CGVDYLEHGVADWATRKATAQGFGRAVERRQHKEQAWAGLRFAVVVHLLSVRHNWRLRVR 120

Query: 91  IAVAEGKSVPS-IVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFP 149
             V E   V   ++ ++  A+WFERE +D++GI F+GHPDLRRILTDYGF GHP RKDFP
Sbjct: 121 TFVDEEILVVPSVIQLWASANWFEREAFDLFGILFDGHPDLRRILTDYGFIGHPFRKDFP 180

Query: 150 VTGFVELHYDDKVKKVVYRPVELM 173
           ++G VE+ YD + ++V+Y PV + 
Sbjct: 181 LSGNVEMRYDPEQQRVIYEPVSIE 204


>gi|325303432|tpg|DAA34135.1| TPA_exp: NADH-ubiquinone oxidoreductase NDUFS3 30 kDa subunit
           [Amblyomma variegatum]
          Length = 217

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 79/159 (49%), Positives = 107/159 (67%), Gaps = 1/159 (0%)

Query: 4   KIEDLGDYIVNSFSGSVRFAVNSVG-ELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
           K+ED G Y+       V+    + G EL + +    +V + SFL+D  +  + NI+D+CG
Sbjct: 59  KLEDFGRYVAECLPKYVQKVQITPGDELEVMIAPEGIVPVLSFLKDHQNAQYTNIVDICG 118

Query: 63  VDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGI 122
           VD  +R  RF+VVYH LS  +N R+RVK    E   + S   ++ GA+W+EREVWDMYG+
Sbjct: 119 VDVPTRQYRFEVVYHLLSVHFNSRIRVKTYTDELTPLDSATAVFKGANWYEREVWDMYGV 178

Query: 123 FFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDK 161
           FF  HPDLRRILTDYGFEGHP RKDFP++G+VE+ YDD+
Sbjct: 179 FFGNHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDE 217


>gi|30249735|ref|NP_841805.1| NADH dehydrogenase subunit C [Nitrosomonas europaea ATCC 19718]
 gi|75540323|sp|Q82TU5|NUOC_NITEU RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|30180772|emb|CAD85686.1| Respiratory-chain NADH dehydrogenase 30 Kd subunit [Nitrosomonas
           europaea ATCC 19718]
          Length = 206

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 83/210 (39%), Positives = 112/210 (53%), Gaps = 24/210 (11%)

Query: 1   MVR-KIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIID 59
           M   ++E L   +             ++GEL+L V   DL  +   LRD     F  +ID
Sbjct: 1   MTNSRLEKLAADLQRILGDRQIDISCALGELTLLVHSRDLPDIAEVLRDHQDLGFDTLID 60

Query: 60  LCGVDFLSR-----------SNRFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIY 106
           LCGVDF                RF VVYH LS K+N RLRV++   +     V S++ ++
Sbjct: 61  LCGVDFSEYSTDTHAGYKREDRRFAVVYHLLSVKHNHRLRVRVFAEDNEFPMVDSVMPVW 120

Query: 107 PGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVV 166
           P A+WFERE +D++GI F  HPDLRRILTDYGF G+P RKDFP++G VE+ YD   K+VV
Sbjct: 121 PSANWFEREAFDLFGIIFNNHPDLRRILTDYGFIGNPFRKDFPLSGHVEMRYDPDQKRVV 180

Query: 167 YRPVELMQEHRDYDFLSPWEGVNSLFAKED 196
           Y+PV +           P E    +  +E 
Sbjct: 181 YQPVTIE----------PREITPYVIREEQ 200


>gi|329118900|ref|ZP_08247595.1| NADH-quinone oxidoreductase subunit C [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464928|gb|EGF11218.1| NADH-quinone oxidoreductase subunit C [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 196

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 74/199 (37%), Positives = 108/199 (54%), Gaps = 18/199 (9%)

Query: 6   EDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDF 65
            DL               + + GE++++      + + + LRD     F  ++DLCGVD+
Sbjct: 4   NDLHAAASRILGDKASNIILAFGEVTVECRAEHYLDVMTTLRDHEELHFELLVDLCGVDY 63

Query: 66  LSRSNRFD------VVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWFEREVW 117
            +  N+         V   LS K N+R+RV++   +     V S+V +Y  ADW+ERE +
Sbjct: 64  STYKNQAWQGKRFAAVSQLLSVKNNQRIRVRVWADDDGFPVVESVVPVYNSADWYEREAF 123

Query: 118 DMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHR 177
           DMYGI F  HPDLRRILTDYGF GHP RKDFPV+G+VE+ YD+  K+V+Y+PV +     
Sbjct: 124 DMYGIIFNNHPDLRRILTDYGFVGHPFRKDFPVSGYVEMRYDEAEKRVIYQPVTIE---- 179

Query: 178 DYDFLSPWEGVNSLFAKED 196
                 P E    +  +E+
Sbjct: 180 ------PREITPRVVREEN 192


>gi|302499495|ref|XP_003011743.1| hypothetical protein ARB_01971 [Arthroderma benhamiae CBS 112371]
 gi|291175296|gb|EFE31103.1| hypothetical protein ARB_01971 [Arthroderma benhamiae CBS 112371]
          Length = 174

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 78/159 (49%), Positives = 109/159 (68%), Gaps = 3/159 (1%)

Query: 43  CSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSI 102
            +FLRD     +  + D+  VDF +R  RF+VVY+ LS ++N R+RVK    E   VPSI
Sbjct: 1   MTFLRDHTAAEYTQVSDITAVDFPTREYRFEVVYNLLSVRHNSRIRVKTYADEATPVPSI 60

Query: 103 VGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKV 162
             +Y GA WFEREV+DM+G+FF GHPDLRRI+TDYGF+GHPLRKDFP++G+ E+ YD++ 
Sbjct: 61  TSLYDGALWFEREVYDMFGVFFTGHPDLRRIMTDYGFDGHPLRKDFPLSGYTEIRYDEEK 120

Query: 163 KKVVYRPVELMQEHRDYD-FLSPWEGVNSLFAKEDSKDD 200
           K++V  P+EL Q  R+++   S WEG+      +   D+
Sbjct: 121 KRIVVEPLELTQAFRNFEGGSSAWEGIGQGI--DRKPDN 157


>gi|157825616|ref|YP_001493336.1| NADH dehydrogenase subunit C [Rickettsia akari str. Hartford]
 gi|157799574|gb|ABV74828.1| NADH dehydrogenase subunit C [Rickettsia akari str. Hartford]
          Length = 207

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 73/195 (37%), Positives = 118/195 (60%), Gaps = 1/195 (0%)

Query: 4   KIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGV 63
            ++   + + +  S  +   +     L+  V+   L+     L++     F  + DL G 
Sbjct: 2   TLDKFIEKLADKSSILITPVMVK-DYLAYKVELNFLLPFLKALKESAELRFTVLTDLFGA 60

Query: 64  DFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIF 123
           DF  R  RF+VVY+ LS K N+RL +K+ ++E +++PS + I+  A W+EREV+DMYG+ 
Sbjct: 61  DFPKRDKRFEVVYNLLSLKLNKRLIIKVYISEEETIPSAMNIFSTACWYEREVYDMYGVN 120

Query: 124 FEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLS 183
           F+G+ D RRILTDY F+GHPLRKDFP+TG+ ++ YD+++K+V Y PV    E+R++DF S
Sbjct: 121 FDGNDDKRRILTDYEFDGHPLRKDFPLTGYTQVKYDEQLKQVAYEPVNCDIEYREFDFSS 180

Query: 184 PWEGVNSLFAKEDSK 198
            W     +   ++  
Sbjct: 181 HWHSQTYVLPGDEKA 195


>gi|261364349|ref|ZP_05977232.1| NADH-quinone oxidoreductase chain 5 [Neisseria mucosa ATCC 25996]
 gi|288567613|gb|EFC89173.1| NADH-quinone oxidoreductase chain 5 [Neisseria mucosa ATCC 25996]
          Length = 197

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 77/203 (37%), Positives = 118/203 (58%), Gaps = 18/203 (8%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +  I  L + +V          ++++GE++++      VS+ + LRD     F  ++DLC
Sbjct: 1   MASIHKLYETVVRVLGNQASKVISALGEITVECLPEHYVSIMTALRDHEELHFELLVDLC 60

Query: 62  GVDFLSRSNRFD------VVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWFE 113
           GVD+ +  N         VV   LS K N+R+RV++ V++     V S+V +Y  ADW+E
Sbjct: 61  GVDYSTYKNEAWQGKRFAVVSQLLSVKNNQRIRVRVWVSDDDFPVVESVVPVYNSADWYE 120

Query: 114 REVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELM 173
           RE +D+YGI F  HPDLRRILTDYGF GHP RKDFP++G+VE+ YD++ K+V+Y+PV + 
Sbjct: 121 REAFDLYGIMFNNHPDLRRILTDYGFVGHPFRKDFPISGYVEMRYDEEQKRVIYQPVTIE 180

Query: 174 QEHRDYDFLSPWEGVNSLFAKED 196
                     P E    +  +E+
Sbjct: 181 ----------PREITPRIVREEN 193


>gi|11466593|ref|NP_066483.1| NADH dehydrogenase subunit 9 [Rhodomonas salina]
 gi|10444180|gb|AAG17754.1|AF288090_30 NADH dehydrogenase subunit 9 [Rhodomonas salina]
          Length = 188

 Score =  182 bits (462), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 80/180 (44%), Positives = 116/180 (64%)

Query: 7   DLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFL 66
           ++ +++  S    +     S+  L + +    L  + SFL+++  CCF  ++D+  +DFL
Sbjct: 8   NIFEFLEYSLHNYILIVKKSINGLVVKIVKSKLKEILSFLKNNEFCCFKMLLDIYAIDFL 67

Query: 67  SRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEG 126
            R+NRF + Y   S KYN  L ++ ++ E  SV SI  +Y   +W EREVWDM GIFF+ 
Sbjct: 68  QRANRFVLNYLLRSLKYNYFLTLQFSLNENSSVDSITYLYKNGNWVEREVWDMNGIFFDN 127

Query: 127 HPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWE 186
           HPDLRRILTDYGFEG PLRKDFP++GF E+ YDD  K+++   +EL QE R ++F SPW+
Sbjct: 128 HPDLRRILTDYGFEGFPLRKDFPISGFKEIRYDDSQKRIISEQIELAQEFRLFNFESPWK 187


>gi|11467084|ref|NP_042560.1| NADH dehydrogenase, subunit 9 [Acanthamoeba castellanii]
 gi|3914188|sp|Q37383|NDUS3_ACACA RecName: Full=NADH-ubiquinone oxidoreductase subunit 9
 gi|562065|gb|AAD11853.1| NADH dehydrogenase, subunit 9 [Acanthamoeba castellanii]
          Length = 195

 Score =  182 bits (462), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 77/192 (40%), Positives = 113/192 (58%), Gaps = 6/192 (3%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGE---LSLDVDCGDLVSLCSFLRDDPHCCFVNI 57
           M RKI      +   +   ++  +    E     L V+  +  +L   L+      F  +
Sbjct: 7   MSRKIY-YIKLLTGLYKKFIKALIVKKNESNNAYLLVETANFYNLVFSLQRSSLTQFKVL 65

Query: 58  IDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVW 117
            D+C VD+  + +RF++ Y+  S KYN R+ +K   +      SI  ++  A+W ERE W
Sbjct: 66  NDVCIVDYPEKIDRFELSYNLSSIKYNFRIFIKTYTSAYVP--SISTLFNSANWIERECW 123

Query: 118 DMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHR 177
           DM+G+FF  HPDLRRILTDYGFEG PLRKDFP+TG++E+ YDD+   +VY P+EL QE+R
Sbjct: 124 DMFGVFFTNHPDLRRILTDYGFEGFPLRKDFPLTGYIEIRYDDEKANIVYEPLELSQEYR 183

Query: 178 DYDFLSPWEGVN 189
            ++F SPWE + 
Sbjct: 184 LFNFTSPWEKIK 195


>gi|239816481|ref|YP_002945391.1| NADH (or F420H2) dehydrogenase, subunit C [Variovorax paradoxus
           S110]
 gi|239803058|gb|ACS20125.1| NADH (or F420H2) dehydrogenase, subunit C [Variovorax paradoxus
           S110]
          Length = 203

 Score =  182 bits (461), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 75/197 (38%), Positives = 107/197 (54%), Gaps = 18/197 (9%)

Query: 8   LGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLS 67
           L   I  +     +    ++GE+++ V     +     LRD P C F  +IDLCG+D+  
Sbjct: 11  LRATIAETLGARAKSVTLALGEVTVVVAADAYIEAAMLLRDAPGCRFEQLIDLCGMDYSD 70

Query: 68  R------SNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADWFEREVWDM 119
                    R+ VV H LS   N+R+R+K+           S+  ++  A WFERE +D+
Sbjct: 71  YREGEWQGERYGVVTHLLSVSLNQRVRLKVFAPNEDLPVVDSLQPVWNAATWFEREAFDL 130

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDY 179
           YGI FEGH DLRRILTDYGF GHP RKDFPV+G VE+ YD++ K+VVY+PV +       
Sbjct: 131 YGIVFEGHDDLRRILTDYGFIGHPFRKDFPVSGHVEMRYDEEQKRVVYQPVSIE------ 184

Query: 180 DFLSPWEGVNSLFAKED 196
               P E    +  +++
Sbjct: 185 ----PREITPRVIREDN 197


>gi|54606793|dbj|BAD66816.1| NADH dehydrogenase subunit 9 [Beta vulgaris subsp. vulgaris]
          Length = 192

 Score =  181 bits (460), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 79/148 (53%), Positives = 104/148 (70%)

Query: 40  VSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV 99
             L  FL+   +  F  +ID+CGVD+ SR  RF+VVY+ LS +YN R+RV+    E   +
Sbjct: 39  FKLLCFLKLHTYTRFQVLIDICGVDYPSRKRRFEVVYNLLSTRYNSRIRVQTCADEVTRI 98

Query: 100 PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYD 159
             +V ++P A  +EREVWDM+G+    HPDLRRILTDYGFEGHPLRKDFP++G+VE+ YD
Sbjct: 99  SPVVSLFPSAGRWEREVWDMFGVSSINHPDLRRILTDYGFEGHPLRKDFPLSGYVEVRYD 158

Query: 160 DKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           D  K+VV  P+E+ QE R +DF SPWE 
Sbjct: 159 DPEKRVVSEPIEMTQEFRYFDFASPWEQ 186


>gi|224143075|ref|XP_002335983.1| predicted protein [Populus trichocarpa]
 gi|222837161|gb|EEE75540.1| predicted protein [Populus trichocarpa]
          Length = 190

 Score =  181 bits (459), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 80/155 (51%), Positives = 107/155 (69%)

Query: 33  DVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIA 92
           D +   L  L  FL+   +     +ID+CGVD+ SR  RF+VVY+ LS +YN R+RV+ +
Sbjct: 32  DTNSDYLFQLLCFLKFHTYTRVQVLIDICGVDYPSRKRRFEVVYNLLSTRYNSRIRVQTS 91

Query: 93  VAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTG 152
             E   +  +V ++P A  +EREVWDM+G+ F  HPDLRRILTDYGFEGHPLRKD P++G
Sbjct: 92  ADEVTRIFPVVSLFPSAGRWEREVWDMFGVSFINHPDLRRILTDYGFEGHPLRKDLPLSG 151

Query: 153 FVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           +VE+ YDD  K+VV  P+E+ QE R +DF SPWE 
Sbjct: 152 YVEVRYDDPEKRVVSEPIEMTQEFRYFDFASPWEQ 186


>gi|742345|prf||2009372A NADH dehydrogenase:SUBUNIT=9
          Length = 192

 Score =  181 bits (459), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 78/148 (52%), Positives = 104/148 (70%)

Query: 40  VSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV 99
             L  FL+   +  F  +ID+CGVD+ SR  RF+VVY+ LS +YN R+R++    E   +
Sbjct: 39  FQLLCFLKLHTYTRFQVLIDICGVDYPSRKRRFEVVYNLLSTRYNSRIRLQTCADEVTRI 98

Query: 100 PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYD 159
             +V ++P A  +EREVWDM+G+    HPDLRRILTDYGFEGHPLRKDFP++G+VE+ YD
Sbjct: 99  SPVVSLFPSAGRWEREVWDMFGVSSINHPDLRRILTDYGFEGHPLRKDFPLSGYVEVRYD 158

Query: 160 DKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           D  K+VV  P+E+ QE R +DF SPWE 
Sbjct: 159 DPEKRVVSEPIEMTQEFRYFDFASPWEQ 186


>gi|88606931|ref|YP_505116.1| NADH dehydrogenase I, C subunit [Anaplasma phagocytophilum HZ]
 gi|88597994|gb|ABD43464.1| NADH dehydrogenase I, C subunit [Anaplasma phagocytophilum HZ]
          Length = 188

 Score =  181 bits (459), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 80/190 (42%), Positives = 113/190 (59%), Gaps = 3/190 (1%)

Query: 1   MVRKIEDLGD-YIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIID 59
           M   IE +   +I       +    +  G L   ++   +      LRDDP      + D
Sbjct: 1   MSLDIEPVASSHIQELLQTDIVLRQD--GVLQCYLEAQSIRDNLITLRDDPKTKLRVLTD 58

Query: 60  LCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDM 119
           +  VD+ ++ +RF+VVY  LS  YN R+  K+A+ EG  +PS+  ++  A WFEREV+DM
Sbjct: 59  IFAVDYHNKKSRFEVVYMLLSLVYNIRVCCKVALTEGSIIPSVTSVFGSAGWFEREVYDM 118

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDY 179
           YGI F  HPDLRRILTDYGF GHP+ KDFP+TG+ E+ YD +  KV Y+PV+L Q  R +
Sbjct: 119 YGIEFSDHPDLRRILTDYGFRGHPMLKDFPLTGYEEIRYDFRKGKVAYQPVDLQQNFRLF 178

Query: 180 DFLSPWEGVN 189
           + +SPW+G  
Sbjct: 179 NSMSPWKGYK 188


>gi|302879340|ref|YP_003847904.1| NADH (or F420H2) dehydrogenase, subunit C [Gallionella
           capsiferriformans ES-2]
 gi|302582129|gb|ADL56140.1| NADH (or F420H2) dehydrogenase, subunit C [Gallionella
           capsiferriformans ES-2]
          Length = 198

 Score =  181 bits (459), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 75/203 (36%), Positives = 110/203 (54%), Gaps = 18/203 (8%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M      L + +    S  +      +GE ++ V   D++ + + LRD  +  F  + DL
Sbjct: 1   MTTDKISLREALEALLSDQLLSVQERLGETTIVVRAVDMLPVLTKLRDAENLQFTQMTDL 60

Query: 61  CGVDFLSRSNRFD------VVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWF 112
           CG+D+              VVY  LS  +NRRLRV+I   E     + S+  ++ GA+WF
Sbjct: 61  CGMDYSEYGEGAWEGRRFAVVYQLLSVVHNRRLRVRIFAEEDDFPVLASVTPVWAGANWF 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D++GI F GHPDLRRILTDYGF G+P RKDFP++G VE+ YD + ++VVY+PV +
Sbjct: 121 EREAFDLFGIIFTGHPDLRRILTDYGFVGNPFRKDFPISGHVEMRYDAEQQRVVYQPVTV 180

Query: 173 MQEHRDYDFLSPWEGVNSLFAKE 195
                      P E    +  +E
Sbjct: 181 E----------PREVTPRIIREE 193


>gi|261378538|ref|ZP_05983111.1| NADH-quinone oxidoreductase chain 5 [Neisseria cinerea ATCC 14685]
 gi|269145088|gb|EEZ71506.1| NADH-quinone oxidoreductase chain 5 [Neisseria cinerea ATCC 14685]
          Length = 197

 Score =  181 bits (459), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 75/203 (36%), Positives = 118/203 (58%), Gaps = 18/203 (8%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +  I++L + +           ++++GE++++      VS+ + LRD     F  ++DLC
Sbjct: 1   MASIQNLYETVSRVLGNQASKVISALGEITVECLPEHYVSVMTTLRDHEELHFELLVDLC 60

Query: 62  GVDFLSRSNRFD------VVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWFE 113
           GVD+ +  N         VV   LS K N+R+RV++ V++     V S+V +Y  ADW+E
Sbjct: 61  GVDYSTYKNEAWQGKRFAVVSQLLSVKNNQRIRVRVWVSDDDFPVVESVVPVYNSADWYE 120

Query: 114 REVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELM 173
           RE +D+YGI F  HPDLRRILTDYGF GHP RKDFP++G+VE+ YD++ K+V+Y+ V + 
Sbjct: 121 REAFDLYGIMFNNHPDLRRILTDYGFVGHPFRKDFPISGYVEMRYDEEQKRVIYQSVTIE 180

Query: 174 QEHRDYDFLSPWEGVNSLFAKED 196
                     P E    +  +E+
Sbjct: 181 ----------PREITPRIVREEN 193


>gi|121609760|ref|YP_997567.1| NADH (or F420H2) dehydrogenase subunit C [Verminephrobacter
           eiseniae EF01-2]
 gi|218534345|sp|A1WLP2|NUOC_VEREI RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|121554400|gb|ABM58549.1| NADH (or F420H2) dehydrogenase, subunit C [Verminephrobacter
           eiseniae EF01-2]
          Length = 203

 Score =  181 bits (459), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 78/211 (36%), Positives = 117/211 (55%), Gaps = 22/211 (10%)

Query: 1   MVRKI----EDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVN 56
           M+  +    E L D+I  +    +R    ++ E+++ +   D       LRDDP C F  
Sbjct: 1   MMTAVAIRPERLRDHIAAALGARLRQITLALEEVTVVLAAADYFDAMRVLRDDPVCRFEQ 60

Query: 57  IIDLCGVDFLSR------SNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPG 108
           +IDLC VD+ +         R+ VV H LS   N+RLRVK+   +      PS+ G++  
Sbjct: 61  LIDLCAVDYSTYADAVQQGPRYCVVAHLLSVSLNQRLRVKVFCPDDDFPLLPSVCGLWNS 120

Query: 109 ADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYR 168
           A+W+ERE +D++GI F+GH DLRRILTDYGF GHP RKDFP++G V++ YD ++++VVY 
Sbjct: 121 ANWYEREAFDLFGILFDGHDDLRRILTDYGFIGHPFRKDFPLSGHVQMRYDAELRRVVYE 180

Query: 169 PVELMQEHRDYDFLSPWEGVNSLFAKEDSKD 199
           PV +           P E    +  ++   D
Sbjct: 181 PVSIE----------PREITPRIIREDHYAD 201


>gi|15054572|gb|AAK82657.1|AF276428_1 NADH dehydrogenase subunit 9 [Beta vulgaris subsp. maritima]
          Length = 206

 Score =  180 bits (458), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 79/148 (53%), Positives = 104/148 (70%)

Query: 40  VSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV 99
             L  FL+   +  F  +ID+CGVD+ SR  RF+VVY+ LS +YN R+RV+    E   +
Sbjct: 39  FQLLCFLKLHTYTRFQVLIDICGVDYPSRKRRFEVVYNLLSTRYNSRIRVQTCADEVTRI 98

Query: 100 PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYD 159
             +V ++P A  +EREVWDM+G+    HPDLRRILTDYGFEGHPLRKDFP++G+VE+ YD
Sbjct: 99  SPVVSLFPSAGRWEREVWDMFGVSSINHPDLRRILTDYGFEGHPLRKDFPLSGYVEVRYD 158

Query: 160 DKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           D  K+VV  P+E+ QE R +DF SPWE 
Sbjct: 159 DPEKRVVSEPIEMTQELRYFDFASPWEQ 186


>gi|255590759|ref|XP_002535359.1| NADH-ubiquinone oxidoreductase mitochondrial precursor, putative
           [Ricinus communis]
 gi|223523367|gb|EEF27025.1| NADH-ubiquinone oxidoreductase mitochondrial precursor, putative
           [Ricinus communis]
          Length = 169

 Score =  180 bits (458), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 79/155 (50%), Positives = 104/155 (67%)

Query: 33  DVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIA 92
           D +   L  L  FL+   +      ID+CGVD  SR  RF+VVY+ LS +YN R+RV+ +
Sbjct: 11  DTNSDYLFQLLCFLKLHTYTRVQVSIDICGVDHPSRKRRFEVVYNLLSTRYNSRIRVQTS 70

Query: 93  VAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTG 152
             E   +  +V ++P A W+EREVWDM+G+    HPDLRRI TDYGFEGHPLRKD P++G
Sbjct: 71  ADEVTRISPVVSLFPSAGWWEREVWDMFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSG 130

Query: 153 FVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           +VE+ YDD  K+VV  P+E+ QE R +DF SPWE 
Sbjct: 131 YVEVRYDDPEKRVVSEPIEMTQEFRYFDFASPWEQ 165


>gi|260223140|emb|CBA33406.1| NADH-quinone oxidoreductase subunit C [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 197

 Score =  180 bits (458), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 73/196 (37%), Positives = 103/196 (52%), Gaps = 18/196 (9%)

Query: 9   GDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSR 68
              +       V+    ++GE+++ V      +    LR  P C F  +IDLCGVD+   
Sbjct: 7   KAAVEAVLGDKVKHIDIALGEVTVLVSAQHYHAAAEILRTAPGCQFEQLIDLCGVDYSEY 66

Query: 69  S------NRFDVVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADWFEREVWDMY 120
                   R+ VV H LS   N+RLR+K+   +       S+  I+  A+WFERE +D++
Sbjct: 67  KEGAYDGPRYAVVSHLLSISLNQRLRLKVMAPDDDMPLVASVNDIWNSANWFEREAFDLF 126

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           GI FEGH DLRRILTDYGF GHP RKDFP+TG VE+ YD +  +VVY+PV +        
Sbjct: 127 GIIFEGHDDLRRILTDYGFIGHPFRKDFPMTGHVEMRYDAEQARVVYQPVTIE------- 179

Query: 181 FLSPWEGVNSLFAKED 196
                E    +  ++ 
Sbjct: 180 ---AREITPRIIREDK 192


>gi|87043014|ref|YP_492628.1| NADH dehydrogenase subunit 9 [Dictyostelium citrinum]
 gi|122000118|sp|Q2LCR4|NDUS3_DICCI RecName: Full=NADH-ubiquinone oxidoreductase subunit 9
 gi|84682114|gb|ABC60379.1| NADH dehydrogenase subunit 9 [Dictyostelium citrinum]
          Length = 209

 Score =  180 bits (458), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 70/183 (38%), Positives = 114/183 (62%), Gaps = 4/183 (2%)

Query: 7   DLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFL 66
           DLG+ +  S  G ++  +     L + V+  +L+ +  FL++        ++D+  +D L
Sbjct: 13  DLGENLRGSIPGLIKKVMYKTQYLEIQVEKKNLLPVLRFLKESSKYQCTMLLDIVCIDCL 72

Query: 67  SRSN----RFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGI 122
           +       RF ++Y   S   N R+ +   V     + +  G++  + W ERE+WDM+GI
Sbjct: 73  NIEEIKIGRFKIIYVLNSIYNNTRVHISTYVENNGIIETTSGLFESSVWLEREIWDMFGI 132

Query: 123 FFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFL 182
           +FE HPDLRRILTDYGF G+PL+KDFP+TG++E++YD   KK++Y+P+ELMQE+R+Y+F 
Sbjct: 133 YFEKHPDLRRILTDYGFVGYPLKKDFPITGYLEVYYDVADKKIIYKPIELMQEYRNYNFG 192

Query: 183 SPW 185
           + W
Sbjct: 193 AVW 195


>gi|1020087|dbj|BAA07214.1| NADH dehydrogenase subunit 9 [Beta trigyna]
          Length = 192

 Score =  180 bits (458), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 78/148 (52%), Positives = 105/148 (70%)

Query: 40  VSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV 99
             L  FL+   +  F  +ID+CGVD+ SR  RF+VVY+ LS +YN R+R++ +  E   +
Sbjct: 39  FQLLCFLKLHTYTRFQVLIDICGVDYPSRKRRFEVVYNLLSTRYNSRIRLQTSADEVTRI 98

Query: 100 PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYD 159
             +V ++P A  +EREVWDM+G+    HPDLRRILTDYGFEGHPLRKDFP++G+VE+ YD
Sbjct: 99  SPVVSLFPSAGRWEREVWDMFGVSSINHPDLRRILTDYGFEGHPLRKDFPLSGYVEVRYD 158

Query: 160 DKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           D  K+VV  P+E+ QE R +DF SPWE 
Sbjct: 159 DPEKRVVSEPIEMTQEFRYFDFASPWEQ 186


>gi|157803903|ref|YP_001492452.1| NADH dehydrogenase subunit C [Rickettsia canadensis str. McKiel]
 gi|157785166|gb|ABV73667.1| NADH dehydrogenase subunit C [Rickettsia canadensis str. McKiel]
          Length = 196

 Score =  180 bits (457), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 80/196 (40%), Positives = 119/196 (60%), Gaps = 1/196 (0%)

Query: 4   KIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGV 63
            ++ L + +   +S  +       G L+ +V+   L+     L+      F  + DL G 
Sbjct: 2   TLDKLIEELAAKYSILITHITVQ-GYLAYNVEPHFLLLFLKALKKSEELRFTVLTDLFGA 60

Query: 64  DFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIF 123
           DF  R  RF+VVY+ LS K N+RL +K+ ++E +S+PS + I+  A W+EREV+DM+G+ 
Sbjct: 61  DFPERDKRFEVVYNLLSLKLNKRLIIKVQISEKESIPSAMNIFNAACWYEREVYDMFGVN 120

Query: 124 FEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLS 183
           FEG+ D RRILTDY FEGHPLRKDFP+TG+ ++ YD K+KKV Y PV+L  E+R +DF S
Sbjct: 121 FEGNDDKRRILTDYEFEGHPLRKDFPLTGYTQVKYDKKLKKVAYEPVDLDIEYRKFDFSS 180

Query: 184 PWEGVNSLFAKEDSKD 199
            W     +   ++   
Sbjct: 181 QWHSPTYILPGDEKAK 196


>gi|254796792|ref|YP_003081629.1| NADH-quinone oxidoreductase chain c 1 [Neorickettsia risticii str.
           Illinois]
 gi|254590039|gb|ACT69401.1| NADH-quinone oxidoreductase chain c 1 [Neorickettsia risticii str.
           Illinois]
          Length = 186

 Score =  180 bits (457), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 84/185 (45%), Positives = 121/185 (65%), Gaps = 4/185 (2%)

Query: 17  SGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVY 76
           +  V   +N+  + +++     LV L S+L     C F  +ID+ G+D+L R  R +VVY
Sbjct: 5   TSKVDALINAPEKCTVNSSLESLVELISYL---SSCGFEQLIDIFGIDYLEREKRIEVVY 61

Query: 77  HFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILT 135
             L+ K NRR  VK++V    + VP+  G++  A+WFEREV+DMYG+ FEGHPDLRRILT
Sbjct: 62  LLLNLKRNRRCCVKVSVDPASEKVPTCCGVFSVANWFEREVYDMYGVVFEGHPDLRRILT 121

Query: 136 DYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEGVNSLFAKE 195
           DYGFEG P+ KDFP+TG+ E+ YD + K+VVY  V+L Q++R +D L+PW+G+       
Sbjct: 122 DYGFEGFPMLKDFPLTGYKEVRYDLESKEVVYEKVDLSQDYRSFDSLTPWKGIGHPSGAF 181

Query: 196 DSKDD 200
           D K +
Sbjct: 182 DGKKE 186


>gi|238023161|ref|ZP_04603587.1| hypothetical protein GCWU000324_03087 [Kingella oralis ATCC 51147]
 gi|237865544|gb|EEP66684.1| hypothetical protein GCWU000324_03087 [Kingella oralis ATCC 51147]
          Length = 195

 Score =  180 bits (457), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 77/197 (39%), Positives = 108/197 (54%), Gaps = 18/197 (9%)

Query: 7   DLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFL 66
           DL               + + GE++L+    + +SL   LRD     F  ++DLCGVD+ 
Sbjct: 5   DLQAACATLLGDKASNIILAYGEITLECQPKNYLSLMQTLRDHDDLHFEQLVDLCGVDYS 64

Query: 67  SRSNRFD------VVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADWFEREVWD 118
           +  N+         V   LS K N+R+RV++   +      PS+V +Y  ADW+ERE +D
Sbjct: 65  TYQNQAWQGKRFAAVSQLLSIKNNQRIRVRVWADDDDMPIVPSVVSLYNSADWYEREAFD 124

Query: 119 MYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRD 178
           MYGI F  HPDLRRILTDYGF GHP RKDFPV+G+VE+ YD+  K+V+Y+PV +      
Sbjct: 125 MYGIIFNEHPDLRRILTDYGFVGHPFRKDFPVSGYVEMRYDEAEKRVIYQPVTIE----- 179

Query: 179 YDFLSPWEGVNSLFAKE 195
                P E    +  +E
Sbjct: 180 -----PREITPRVVREE 191


>gi|242023154|ref|XP_002432001.1| NADH-ubiquinone oxidoreductase 30 kDa subunit, putative [Pediculus
           humanus corporis]
 gi|212517352|gb|EEB19263.1| NADH-ubiquinone oxidoreductase 30 kDa subunit, putative [Pediculus
           humanus corporis]
          Length = 222

 Score =  180 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 73/170 (42%), Positives = 110/170 (64%), Gaps = 1/170 (0%)

Query: 8   LGDYIVNSFSGSVRFAV-NSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFL 66
            G Y+       V+     S GEL + +    ++ +  FL+D  +C F +++D+ G+D  
Sbjct: 41  FGKYVSECLPKYVQMIQMTSQGELEILIAPEGVLPVMQFLKDHHNCQFESLVDIAGMDVP 100

Query: 67  SRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEG 126
            R  RF+++Y+ LS +YN R+RVK    E   + S+  +Y  ADW+EREVWDMYG++F+ 
Sbjct: 101 GREYRFEIIYNLLSLRYNSRVRVKTYTDELTPIDSVYEVYRAADWYEREVWDMYGVYFKN 160

Query: 127 HPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEH 176
           HPDLRRILTDYGFEGHP R+DFP++G+VE+ YDD+V++VV   ++     
Sbjct: 161 HPDLRRILTDYGFEGHPQRRDFPLSGYVEVRYDDEVQRVVCESLDKTPAF 210


>gi|117926907|ref|YP_867524.1| NADH (or F420H2) dehydrogenase, subunit C [Magnetococcus sp. MC-1]
 gi|117610663|gb|ABK46118.1| NADH dehydrogenase subunit C [Magnetococcus sp. MC-1]
          Length = 187

 Score =  180 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 73/178 (41%), Positives = 99/178 (55%), Gaps = 2/178 (1%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
             K++ L   + +             G L +  D   +V     +RDDP   F   ID+ 
Sbjct: 3   SDKLQRLESRVASILPE--LKREWVCGALVVWCDPEQVVDTLRTMRDDPGMNFKLFIDVT 60

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            V +  R   F+VVY  LS   N R+RVK  V     VPSI G++  ADWFERE+++M+G
Sbjct: 61  AVHYPKREKPFEVVYQLLSVHKNHRIRVKTLVDADTPVPSITGLWKAADWFEREMYEMFG 120

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDY 179
           I   GHPDLRR+L DY F+G PLRKDFPVTG  EL YD+  +++V  PV L   +R++
Sbjct: 121 ILISGHPDLRRLLLDYDFDGFPLRKDFPVTGPFELRYDETQQRIVREPVSLTVPNRNF 178


>gi|292559465|ref|YP_003540833.1| NADH dehydrogenase subunit 9 [Hartmannella vermiformis]
 gi|290775718|gb|ADD62217.1| NADH dehydrogenase subunit 9 [Hartmannella vermiformis]
          Length = 195

 Score =  180 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 73/170 (42%), Positives = 106/170 (62%)

Query: 17  SGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVY 76
           +  V   V     + L  +  ++ SL  FL+      F +++D+ G D+  R+ RF+V +
Sbjct: 21  NKWVDAIVVKPCSMILITNSKNMRSLLIFLKFLFDTNFSSLMDIWGSDYPHRNYRFEVNF 80

Query: 77  HFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTD 136
             L+     RL ++++  E   + +I  +Y  A W EREVWDMYG++F GH DLRRILTD
Sbjct: 81  LILNLSLPYRLIIRVSTNEYIPISTISDLYSSAGWLEREVWDMYGVYFSGHKDLRRILTD 140

Query: 137 YGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWE 186
           YGF G+PLRKDFP+TG+ E+ YDD  K+VV  P+E+ QE R ++F SPWE
Sbjct: 141 YGFSGYPLRKDFPLTGYTEVRYDDTKKQVVLEPLEISQELRLFNFKSPWE 190


>gi|292571964|gb|ADE29879.1| NADH dehydrogenase I chain C [Rickettsia prowazekii Rp22]
          Length = 197

 Score =  180 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 75/197 (38%), Positives = 116/197 (58%), Gaps = 1/197 (0%)

Query: 4   KIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGV 63
            ++ L + +   F   +         L+  ++   L+     L++     F  + DL GV
Sbjct: 2   TLDKLIEKLAAKFRIVITKVAVK-DHLAYKIEPHFLLPFLKALKESEELRFTVLTDLFGV 60

Query: 64  DFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIF 123
           DF  +  RF+VVY+ LS K N+ L +K  ++E +S+PS + I   A W+E EV+DMYG+ 
Sbjct: 61  DFPKKEKRFEVVYNLLSLKLNKNLIIKTHISEKESIPSAMQILSAAYWYELEVYDMYGVN 120

Query: 124 FEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLS 183
           F G+ D RRILTDY FEGHPLRKDFP+TG+ ++ YD K++KV Y PV L  E+R++DF S
Sbjct: 121 FNGNNDKRRILTDYDFEGHPLRKDFPLTGYTQVKYDKKLEKVTYEPVNLDIEYREFDFSS 180

Query: 184 PWEGVNSLFAKEDSKDD 200
            W   + +   ++  ++
Sbjct: 181 HWHSPSYVLPGDEKAEE 197


>gi|284794748|ref|YP_003412101.1| NADH dehydrogenase subunit 9 [Phaeoceros laevis]
 gi|254596068|gb|ACT75309.1| NADH dehydrogenase subunit 9 [Phaeoceros laevis]
          Length = 191

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 77/189 (40%), Positives = 112/189 (59%), Gaps = 2/189 (1%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M +++      ++ +    +     S  E  L  +   L  L  FL+   +  F   ID+
Sbjct: 1   MDKQL--FLKSLIATLPKRIHQFKTSKHENILYTNPDYLFELLWFLKHHINTRFQVSIDI 58

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
            GVD+ SR  RF+VV++ LS +YN  +RV+ +V+E   +  +V I+P A W+EREVWDM+
Sbjct: 59  RGVDYSSRKRRFEVVHNSLSIRYNSCIRVESSVSEITPICLVVNIFPSAGWWEREVWDMF 118

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYD 180
           G +   HPD RRI  DYGFEGHPLRKD  ++G+ E+ YDD  K+VV  P+E+ QE   +D
Sbjct: 119 GAYSSNHPDSRRISIDYGFEGHPLRKDLSLSGYFEVRYDDSEKRVVSEPIEMTQESCYFD 178

Query: 181 FLSPWEGVN 189
           F SPWE  +
Sbjct: 179 FASPWEIAS 187


>gi|291613540|ref|YP_003523697.1| NADH (or F420H2) dehydrogenase, subunit C [Sideroxydans
           lithotrophicus ES-1]
 gi|291583652|gb|ADE11310.1| NADH (or F420H2) dehydrogenase, subunit C [Sideroxydans
           lithotrophicus ES-1]
          Length = 209

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 75/192 (39%), Positives = 109/192 (56%), Gaps = 19/192 (9%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   +  L   +  +FS  V      +GEL+L +   D++++ + LRDD    F  ++D+
Sbjct: 1   MATDLNILSANLNEAFSVKVVSLEERLGELTLVIKAHDMLAVFTRLRDDADLRFEELVDV 60

Query: 61  CGVDF-----------------LSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV--PS 101
           CG+D+                      RF  VYH LS  +N RLRV++   +       S
Sbjct: 61  CGIDYSTYGSELCEDGKYLPDEPRAGPRFAAVYHLLSITHNIRLRVRVFADDDDMPVLNS 120

Query: 102 IVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDK 161
           + GI+P A+W+ERE +D+YGI F GHPDLRRILTDYGF G+P RKDFP++G VE+ YD  
Sbjct: 121 VTGIWPSANWYEREAFDLYGIIFVGHPDLRRILTDYGFVGNPFRKDFPLSGTVEMRYDAA 180

Query: 162 VKKVVYRPVELM 173
            ++V+Y PV + 
Sbjct: 181 QQRVIYEPVTVE 192


>gi|323649874|ref|YP_004237248.1| NADH dehydrogenase subunit 9 [Ricinus communis]
 gi|322394254|gb|ADW96011.1| NADH dehydrogenase subunit 9 [Ricinus communis]
          Length = 190

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 79/155 (50%), Positives = 104/155 (67%)

Query: 33  DVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIA 92
           D +   L  L  FL+   +      ID+CGVD  SR  RF+VVY+ LS +YN R+RV+ +
Sbjct: 32  DTNSDYLFQLLCFLKLHTYTRVQVSIDICGVDHPSRKRRFEVVYNLLSTRYNSRIRVQTS 91

Query: 93  VAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTG 152
             E   +  +V ++P A W+EREVWDM+G+    HPDLRRI TDYGFEGHPLRKD P++G
Sbjct: 92  ADEVTRISPVVSLFPSAGWWEREVWDMFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSG 151

Query: 153 FVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           +VE+ YDD  K+VV  P+E+ QE R +DF SPWE 
Sbjct: 152 YVEVRYDDPEKRVVSEPIEMTQEFRYFDFASPWEQ 186


>gi|15604223|ref|NP_220739.1| NADH dehydrogenase subunit C [Rickettsia prowazekii str. Madrid E]
 gi|6647679|sp|Q9ZDH3|NUOC_RICPR RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|3860915|emb|CAA14815.1| NADH DEHYDROGENASE I CHAIN C (nuoC) [Rickettsia prowazekii]
          Length = 197

 Score =  179 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 75/197 (38%), Positives = 116/197 (58%), Gaps = 1/197 (0%)

Query: 4   KIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGV 63
            ++ L + +   F   +         L+  ++   L+     L++     F  + DL GV
Sbjct: 2   TLDKLIEKLAAKFRIVITKVAVK-DHLAYKIEPHFLLPFLKALKESEELRFTVLTDLFGV 60

Query: 64  DFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIF 123
           DF  +  RF+VVY+ LS K N+ L +K  ++E +S+PS + I   A W+E EV+DMYG+ 
Sbjct: 61  DFPKKEKRFEVVYNLLSLKLNKNLIIKTHISEKESIPSAMQILSAAYWYELEVYDMYGVN 120

Query: 124 FEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLS 183
           F G+ D RRILTDY FEGHPLRKDFP+TG+ ++ YD K++KV Y PV L  E+R++DF S
Sbjct: 121 FNGNNDKRRILTDYDFEGHPLRKDFPLTGYTQVKYDKKLEKVTYEPVNLDIEYREFDFSS 180

Query: 184 PWEGVNSLFAKEDSKDD 200
            W   + +   ++  ++
Sbjct: 181 HWHSPSYVLPGDEKTEE 197


>gi|82702222|ref|YP_411788.1| NADH dehydrogenase subunit C [Nitrosospira multiformis ATCC 25196]
 gi|123544731|sp|Q2YA25|NUOC_NITMU RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|82410287|gb|ABB74396.1| NADH dehydrogenase subunit C [Nitrosospira multiformis ATCC 25196]
          Length = 205

 Score =  179 bits (453), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 79/185 (42%), Positives = 110/185 (59%), Gaps = 13/185 (7%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
             ++E L   + N  +  +      + +L + V   +L+ + S LRD P   F  +IDLC
Sbjct: 3   STRLETLALCLQNVLADKLANVDQQLDQLIITVSPVNLLPVMSVLRDHPELGFEMLIDLC 62

Query: 62  GVDFLSRS-----------NRFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPG 108
           GVD+                RF VVYH LS ++NRR+RVK    +     V S++ I+P 
Sbjct: 63  GVDYSIYGVEPTSEQGREGKRFAVVYHLLSIRHNRRVRVKAFPEDDEFPVVVSVIDIWPS 122

Query: 109 ADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYR 168
           A+WFERE +D+YGI F GHPDLRRILTDYGF G+P RKDFP++G VE+ YD   ++VVY+
Sbjct: 123 ANWFEREAFDLYGIVFTGHPDLRRILTDYGFIGNPFRKDFPLSGNVEMRYDPDQQRVVYQ 182

Query: 169 PVELM 173
           PV + 
Sbjct: 183 PVTIE 187


>gi|1020088|dbj|BAA07215.1| NADH dehydrogenase subunit 9 [Beta webbiana]
          Length = 192

 Score =  179 bits (453), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 78/148 (52%), Positives = 105/148 (70%)

Query: 40  VSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV 99
             L  FL+   +  F  +ID+CGVD+ SR  RF+VVY+ LS +YN R+R++ +  E   +
Sbjct: 39  FQLLCFLKLHTYTRFQVLIDICGVDYPSRKRRFEVVYNLLSTRYNSRIRLQTSADEVTRI 98

Query: 100 PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYD 159
             +V ++P A  +EREVWDM+G+    HPDLRRILTDYGFEGHPLRKDFP++G+VE+ YD
Sbjct: 99  SPVVRLFPSAGRWEREVWDMFGVSSINHPDLRRILTDYGFEGHPLRKDFPLSGYVEVRYD 158

Query: 160 DKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           D  K+VV  P+E+ QE R +DF SPWE 
Sbjct: 159 DPEKRVVSEPIEMTQEFRYFDFASPWEQ 186


>gi|80978900|gb|ABB54699.1| NADH dehydrogenase subunit 9 [Brassica oleracea var. botrytis]
          Length = 190

 Score =  179 bits (453), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 79/155 (50%), Positives = 104/155 (67%)

Query: 33  DVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIA 92
           D +   L  L  FL+   +      ID+CGVD  SR  RF+VVY+ LS +YN R+RV+ +
Sbjct: 32  DTNTDYLFQLLCFLKLHTYTRVQVSIDICGVDHPSRKRRFEVVYNLLSTRYNSRIRVQTS 91

Query: 93  VAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTG 152
             E   +  +V ++P A  +EREVWDM+G+ F  HPDLRRI TDYGFEGHPLRKD P++G
Sbjct: 92  ADEVTRISPVVSLFPSAGRWEREVWDMFGVSFINHPDLRRISTDYGFEGHPLRKDLPLSG 151

Query: 153 FVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           +VE+ YDD  K+VV  P+E+ QE R +DF SPWE 
Sbjct: 152 YVEVRYDDPEKRVVSEPIEMTQEFRYFDFASPWEQ 186


>gi|74325198|ref|YP_316618.1| NADH dehydrogenase subunit 9 [Thalassiosira pseudonana]
 gi|74100264|gb|AAZ99425.1| NADH dehydrogenase subunit 9 [Thalassiosira pseudonana]
          Length = 184

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 76/186 (40%), Positives = 108/186 (58%), Gaps = 3/186 (1%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGE-LSLDVDCGDLVSLCSFLRDDPHCCFVNIID 59
           M  ++  +   I + F       +    + L + V    L  +  F +      F  +  
Sbjct: 1   MNSQL--IVKSIKDLFQLCPLEKIQFYNQDLVIIVKPNLLYDILLFFKYHVSYQFDILTC 58

Query: 60  LCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDM 119
           + GVD+ +   RF +VY  LS +YN RLRVK    E   V S   +Y  A W+E E+WDM
Sbjct: 59  ITGVDYPNNKYRFKLVYDLLSIRYNIRLRVKTFTHELFGVDSCDKLYFTAGWYECEIWDM 118

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDY 179
           YG+FF+ H +L+RILTDYGFEGHPLRKDFP++GFVE+ Y++  K+V+   +EL QE+R +
Sbjct: 119 YGVFFKNHSNLKRILTDYGFEGHPLRKDFPLSGFVEMKYNETEKRVINESIELCQEYRTF 178

Query: 180 DFLSPW 185
            FLSPW
Sbjct: 179 KFLSPW 184


>gi|51473549|ref|YP_067306.1| NADH dehydrogenase subunit C [Rickettsia typhi str. Wilmington]
 gi|81390151|sp|Q68X18|NUOC_RICTY RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|51459861|gb|AAU03824.1| NADH dehydrogenase (ubiquinone) subunit C [Rickettsia typhi str.
           Wilmington]
          Length = 197

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 75/196 (38%), Positives = 115/196 (58%), Gaps = 1/196 (0%)

Query: 4   KIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGV 63
            +++L D +       +         L+  ++   L+     L++     F  + DL GV
Sbjct: 2   TLDELIDKLAAKSRILITKVTVK-DHLAYKIEPHFLLPFLKALKESEELRFTVLTDLFGV 60

Query: 64  DFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIF 123
           DF  R  RF++VY+ LS K N+ L +K  ++E +S+PS + I   A W+E EV+DMYG+ 
Sbjct: 61  DFPKREKRFEIVYNLLSLKLNKNLIIKTNISEKESIPSAMKILSAACWYELEVYDMYGVN 120

Query: 124 FEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLS 183
           F G+ D RRILTDY FEGHPLRKDFP+TG+ ++ YD K+KK+ Y PV L  E+R++DF S
Sbjct: 121 FNGNNDKRRILTDYDFEGHPLRKDFPLTGYTQVKYDKKLKKIAYEPVNLDIEYREFDFSS 180

Query: 184 PWEGVNSLFAKEDSKD 199
            W   + +   ++  +
Sbjct: 181 HWHSPSYILPGDEKAE 196


>gi|81176530|ref|YP_398414.1| nad9 [Triticum aestivum]
 gi|416536|emb|CAA49376.1| 30 kDa subunit of complex I NADH dehydrogenase [Triticum aestivum]
 gi|78675254|dbj|BAE47679.1| nad9 [Triticum aestivum]
 gi|169649064|gb|ACA62625.1| nad9 [Triticum aestivum]
          Length = 287

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 76/148 (51%), Positives = 100/148 (67%)

Query: 40  VSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV 99
             L  FL+   +      ID+CGVD  SR  RF+VV++ LS +YN R+RV+ +  E   +
Sbjct: 136 FPLLCFLKWHTYTRVQVSIDICGVDHPSRKRRFEVVHNLLSTRYNSRIRVQTSADEVTRI 195

Query: 100 PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYD 159
             +V ++P A  +EREVWDM G+    HPDLRRI TDYGFEGHPLRKDFP++G+VE+ YD
Sbjct: 196 SPVVSLFPSAGRWEREVWDMSGVSSINHPDLRRISTDYGFEGHPLRKDFPLSGYVEVRYD 255

Query: 160 DKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           D  K+VV  P+E+ QE R +DF SPWE 
Sbjct: 256 DPEKRVVSEPIEMTQEFRYFDFASPWEQ 283


>gi|256821517|ref|YP_003145480.1| NADH (or F420H2) dehydrogenase subunit C [Kangiella koreensis DSM
           16069]
 gi|256795056|gb|ACV25712.1| NADH (or F420H2) dehydrogenase, subunit C [Kangiella koreensis DSM
           16069]
          Length = 231

 Score =  178 bits (452), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 76/200 (38%), Positives = 105/200 (52%), Gaps = 32/200 (16%)

Query: 6   EDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDF 65
           E L + + N F   +     + GE++++V   DL+ +   LRD     F  +IDL  VD+
Sbjct: 3   ESLVNTLGNIFGDKLIACDKAFGEVTIEVAQDDLLEVAKELRDQDELKFEQLIDLTVVDY 62

Query: 66  LSRSNRFD-------------------------------VVYHFLSPKYNRRLRVKIAVA 94
           ++                                     VVYH LS  +N RLRVK  V 
Sbjct: 63  MTYGQDEWATTEATGTGFGRAREAISSPVHQEWQRDRFAVVYHLLSISHNWRLRVKCFVK 122

Query: 95  EGKSVPS-IVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGF 153
           E + +   ++ ++  A+W+ERE +D++GI FEGHPDLRRILTDYGF GHP RKDFP+ G 
Sbjct: 123 ENRPMLPSVIPVWNSANWYEREAFDLFGILFEGHPDLRRILTDYGFIGHPFRKDFPLIGN 182

Query: 154 VELHYDDKVKKVVYRPVELM 173
           VEL YD K K+ VY PV + 
Sbjct: 183 VELRYDAKQKRCVYEPVSIE 202


>gi|224020983|ref|YP_002608216.1| NADH dehydrogenase subunit 9 [Carica papaya]
 gi|170522395|gb|ACB20505.1| NADH dehydrogenase subunit 9 [Carica papaya]
          Length = 190

 Score =  178 bits (451), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 79/155 (50%), Positives = 104/155 (67%)

Query: 33  DVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIA 92
           D +   L  L  FL+   +      ID+CGVD  SR  RF+VVY+ LS +YN R+RV+ +
Sbjct: 32  DTNTDYLFQLLCFLKLHTYTRVQVSIDICGVDHPSRKRRFEVVYNLLSTRYNSRIRVQTS 91

Query: 93  VAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTG 152
             E   +  +V ++P A  +EREVWDM+G+ F  HPDLRRI TDYGFEGHPLRKD P++G
Sbjct: 92  ADEVTRISPVVSLFPSAGRWEREVWDMFGLSFINHPDLRRISTDYGFEGHPLRKDLPLSG 151

Query: 153 FVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           +VE+ YDD  K+VV  P+E+ QE R +DF SPWE 
Sbjct: 152 YVEVRYDDPEKRVVSEPIEMTQEFRYFDFASPWEQ 186


>gi|325267316|ref|ZP_08133978.1| NADH-quinone oxidoreductase subunit C [Kingella denitrificans ATCC
           33394]
 gi|324981253|gb|EGC16903.1| NADH-quinone oxidoreductase subunit C [Kingella denitrificans ATCC
           33394]
          Length = 195

 Score =  178 bits (451), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 76/198 (38%), Positives = 108/198 (54%), Gaps = 18/198 (9%)

Query: 7   DLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFL 66
           DL         G     + + GEL+++      + +   LRD     F  +IDLCGVD+ 
Sbjct: 5   DLKAACTRILGGKADNIILAFGELTVECRPEHYLDIMQTLRDHAELHFETLIDLCGVDYS 64

Query: 67  SRSNRFD------VVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWFEREVWD 118
           +  N+        VV   LS + N+R+RV++   +     V ++  +Y GADW+ERE +D
Sbjct: 65  TYKNQEWHGKRFAVVSQLLSVQNNQRVRVRVWADDDSFPIVHTVTHLYNGADWYEREAFD 124

Query: 119 MYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRD 178
           MYGI F  HPDLRRILTDYGF GHP RKDFPV+G VE+ YD+  K+V+Y+PV +      
Sbjct: 125 MYGIIFNEHPDLRRILTDYGFVGHPFRKDFPVSGHVEMRYDETEKRVIYQPVTIE----- 179

Query: 179 YDFLSPWEGVNSLFAKED 196
                P E    +  +E+
Sbjct: 180 -----PREITPRVVREEN 192


>gi|77166021|ref|YP_344546.1| NADH (or F420H2) dehydrogenase, subunit C [Nitrosococcus oceani
           ATCC 19707]
 gi|254436376|ref|ZP_05049882.1| NADH dehydrogenase, subunit C subfamily, putative [Nitrosococcus
           oceani AFC27]
 gi|123593539|sp|Q3J830|NUOC_NITOC RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|76884335|gb|ABA59016.1| NADH dehydrogenase subunit C [Nitrosococcus oceani ATCC 19707]
 gi|207088066|gb|EDZ65339.1| NADH dehydrogenase, subunit C subfamily, putative [Nitrosococcus
           oceani AFC27]
          Length = 231

 Score =  178 bits (451), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 78/204 (38%), Positives = 111/204 (54%), Gaps = 31/204 (15%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + +L   I   F G + F     GEL+++V      ++C  LRD+ +  F  +IDL
Sbjct: 1   MANSVAELRRRIEGRFDGEIGFCRLERGELTIEVPREFYFAVCKALRDEENFGFEQLIDL 60

Query: 61  CGVDFLSRS------------------------------NRFDVVYHFLSPKYNRRLRVK 90
           CGVD++                                 +RF VV H LS ++N RLRV+
Sbjct: 61  CGVDYMEYGLSDWETKKATVDGFSRAVERRQYKKQAWTRSRFAVVVHLLSVRHNWRLRVR 120

Query: 91  IAVAEGKSVPS-IVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFP 149
             V E   V   ++ ++   +WFERE +D++GI FEGHPDLRRILTDYGF GHP RKDFP
Sbjct: 121 TFVDEEILVAPSVIQLWASVNWFEREAFDLFGILFEGHPDLRRILTDYGFIGHPFRKDFP 180

Query: 150 VTGFVELHYDDKVKKVVYRPVELM 173
           ++G VE+ YD + ++V+Y PV + 
Sbjct: 181 LSGNVEMRYDPEQQRVIYEPVSIE 204


>gi|332968233|gb|EGK07310.1| NADH-quinone oxidoreductase subunit C [Kingella kingae ATCC 23330]
          Length = 195

 Score =  177 bits (450), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 73/198 (36%), Positives = 109/198 (55%), Gaps = 18/198 (9%)

Query: 7   DLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFL 66
           DL               + +  E++++      + + + LRD     F +++DLCGVD+ 
Sbjct: 5   DLQAACTEILGKKASKILLAFDEVTIECQPEHYLDIMTTLRDHEDLHFESLVDLCGVDYS 64

Query: 67  SRSNRFD------VVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWFEREVWD 118
           +  N          V   +S K N+R+RV++   +     VPS+V +Y GADW+ERE +D
Sbjct: 65  TYKNEAWQGKRFAAVSQLVSVKNNQRVRVRVWAQDDDLPIVPSVVELYNGADWYEREAFD 124

Query: 119 MYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRD 178
           MYGI F  HPDLRRILTDYGF GHP RKDFP++G+VE+ YD+  K+V+Y+PV +      
Sbjct: 125 MYGIIFNEHPDLRRILTDYGFVGHPFRKDFPISGYVEMRYDENEKRVIYQPVTIE----- 179

Query: 179 YDFLSPWEGVNSLFAKED 196
                P E    +  +E+
Sbjct: 180 -----PREITPRVVREEN 192


>gi|91776411|ref|YP_546167.1| NADH (or F420H2) dehydrogenase, subunit C [Methylobacillus
           flagellatus KT]
 gi|122399587|sp|Q1GZL1|NUOC_METFK RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|91710398|gb|ABE50326.1| NADH dehydrogenase subunit C [Methylobacillus flagellatus KT]
          Length = 197

 Score =  177 bits (450), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 67/180 (37%), Positives = 103/180 (57%), Gaps = 8/180 (4%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           + ++E L  ++ + F  S+        E++++     L+ + + LRD     F  +IDLC
Sbjct: 1   MTRLEQLKQHLQDVFGNSITRLQECRNEVTIECQAPCLLEVANLLRDHKLLKFEQLIDLC 60

Query: 62  GVDFLSRSNRFDVVYHF--------LSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFE 113
           GVD+            +        +S     RLRV     +   +P++V I+P A+WFE
Sbjct: 61  GVDYADYGEGSWSGLRYATVYHFLSVSLNQRLRLRVFAPDDDFPVLPTVVDIWPVANWFE 120

Query: 114 REVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELM 173
           RE +D++GI +EGHPDLRR+LTDYGF GHP RKDFP+ G VE+ YD + ++VVY+PV + 
Sbjct: 121 RESFDLFGIMYEGHPDLRRLLTDYGFVGHPFRKDFPMIGNVEMRYDPERQRVVYQPVTID 180


>gi|114330927|ref|YP_747149.1| NADH dehydrogenase subunit C [Nitrosomonas eutropha C91]
 gi|122314157|sp|Q0AHJ8|NUOC_NITEC RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|114307941|gb|ABI59184.1| NADH dehydrogenase subunit C [Nitrosomonas eutropha C91]
          Length = 206

 Score =  177 bits (450), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 74/216 (34%), Positives = 119/216 (55%), Gaps = 24/216 (11%)

Query: 1   MVR-KIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIID 59
           M   +++ L   +    S       +++GEL++ +   DL+ +   LR+     F  ++D
Sbjct: 1   MTDSRVDKLATNLQQVLSDQQVDMSHALGELTILIHSRDLLGIAETLRNHTDLAFDTLVD 60

Query: 60  LCGVDFLSR-----------SNRFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIY 106
           LCGVD+                RF VVYH LS K+N RLR+++ V +     + S++ I+
Sbjct: 61  LCGVDYSEYTTNTHAGYKRGDKRFAVVYHLLSVKHNHRLRIRVFVDDNEFPMLDSVIHIW 120

Query: 107 PGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVV 166
           P A+W+ERE +D++GI F  HPDLRRILTDYGF G+P RKDFP++G +E+ YD + K+V+
Sbjct: 121 PSANWYEREAFDLFGIVFNNHPDLRRILTDYGFIGNPFRKDFPLSGHMEMQYDPEQKRVI 180

Query: 167 YRPVELMQEHRDYDFLSPWEGVNSLFAKEDSKDDMS 202
           Y+P+ +           P E    +  +E    + +
Sbjct: 181 YQPITIE----------PREITPYIIREEQYGKEET 206


>gi|292493666|ref|YP_003529105.1| NADH (or F420H2) dehydrogenase, subunit C [Nitrosococcus halophilus
           Nc4]
 gi|291582261|gb|ADE16718.1| NADH (or F420H2) dehydrogenase, subunit C [Nitrosococcus halophilus
           Nc4]
          Length = 231

 Score =  177 bits (449), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 76/204 (37%), Positives = 108/204 (52%), Gaps = 31/204 (15%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   + +L + +   F G +       GEL++ V      ++C  LRD+    F  +IDL
Sbjct: 1   MATGVMELQERVERRFEGEISSCRLDRGELTVQVPRESYFAVCKALRDEEDFAFEQLIDL 60

Query: 61  CGVDFLSRSN------------------------------RFDVVYHFLSPKYNRRLRVK 90
           CGVD+L                                  RF V+ H LS ++N RLRV+
Sbjct: 61  CGVDYLEYGVGDWETRKATTQGFSRAVERRQHQEHVWGGLRFAVITHLLSIRHNWRLRVR 120

Query: 91  IAVAEGKSVPS-IVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFP 149
             V E   V   +  ++  A+WFERE +D++GI F+GHPDLRRILTDYGF GHP RKDFP
Sbjct: 121 TFVEEEVPVAPSVTELWASANWFEREAFDLFGILFDGHPDLRRILTDYGFIGHPFRKDFP 180

Query: 150 VTGFVELHYDDKVKKVVYRPVELM 173
           ++G VE+ YD + ++V+Y PV + 
Sbjct: 181 LSGNVEMRYDLEQQRVIYEPVSIE 204


>gi|88812974|ref|ZP_01128217.1| NADH (or F420H2) dehydrogenase, subunit C [Nitrococcus mobilis
           Nb-231]
 gi|88789752|gb|EAR20876.1| NADH (or F420H2) dehydrogenase, subunit C [Nitrococcus mobilis
           Nb-231]
          Length = 240

 Score =  177 bits (449), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 74/213 (34%), Positives = 104/213 (48%), Gaps = 44/213 (20%)

Query: 5   IEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD 64
           +E L  +I  +  G V  +    GEL+L V   +L+ +   LRD+    F  +ID+ GVD
Sbjct: 1   MEQLAGHIEQALDGRVSESQIHCGELTLVVKPAELMPVMRVLRDNEAFRFDQLIDITGVD 60

Query: 65  FLSRSNRFDVV------------------------------------------YHFLSPK 82
           + +      +                                           YH LS  
Sbjct: 61  YAAYGQDEWITEQASATGFSRGVDGFTTGRLGLTGIYGVHEIKSNTGRRFAAVYHLLSVA 120

Query: 83  YNRRLRVKIAVAEGK--SVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFE 140
            N+R+RV+    +     + SI  I+  ADWFERE +D++GI F+GHPDLRRILTDYGF 
Sbjct: 121 LNQRVRVRAFCEDDNFPMLDSITSIWSCADWFEREAFDLFGIIFDGHPDLRRILTDYGFV 180

Query: 141 GHPLRKDFPVTGFVELHYDDKVKKVVYRPVELM 173
           GHP RKDFP+ G VE+ YD+  ++VVY PV + 
Sbjct: 181 GHPFRKDFPLIGNVEVRYDEDRQRVVYEPVSIA 213


>gi|253807638|gb|ACT36216.1| NADH dehydrogenase subunit 9 [Helicosporidium sp. ex Simulium
           jonesi]
          Length = 259

 Score =  177 bits (448), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 72/167 (43%), Positives = 103/167 (61%), Gaps = 9/167 (5%)

Query: 26  SVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNR 85
              +    V    L+S   FL++  +  +  +ID+  VD+ S+ NRF++VY+ LS +YN 
Sbjct: 88  KFNQAIFYVYPQYLLSFLDFLKNHMNTQYKVLIDITAVDYPSKYNRFEIVYNLLSVQYNN 147

Query: 86  RLRVKIAV---------AEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTD 136
           R+ VK  V            + V S   +Y  A W+EREVWDM+GIFF+ +PDLRRILTD
Sbjct: 148 RIIVKTIVDEYSNINSQNYSQCVDSSQSLYSCATWYEREVWDMFGIFFKNNPDLRRILTD 207

Query: 137 YGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLS 183
           YGF GHPLRKDFP++G+ E+ YDD  K+V+   +E  QE R +D+ +
Sbjct: 208 YGFSGHPLRKDFPLSGYKEVRYDDSEKRVITESIECSQEFRSFDYET 254


>gi|13449296|ref|NP_085479.1| NADH dehydrogenase subunit 9 [Arabidopsis thaliana]
 gi|6851007|emb|CAA69753.3| NADH dehydrogenase subunit 9 [Arabidopsis thaliana]
          Length = 190

 Score =  177 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 78/155 (50%), Positives = 104/155 (67%)

Query: 33  DVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIA 92
           D +   L  L  FL+   +      ID+CGVD  SR  RF+VVY+ LS +YN R+RV+ +
Sbjct: 32  DTNTDYLFQLLCFLKLHTYTRVQVSIDICGVDHPSRKRRFEVVYNLLSTRYNSRIRVQTS 91

Query: 93  VAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTG 152
             E   +  +V ++P A  +EREVWDM+G+ F  HPDLRRI TDYGFEGHPLRKD P++G
Sbjct: 92  ADEVTRISPVVSLFPSAGRWEREVWDMFGVSFINHPDLRRISTDYGFEGHPLRKDLPLSG 151

Query: 153 FVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           +V++ YDD  K+VV  P+E+ QE R +DF SPWE 
Sbjct: 152 YVQVRYDDPEKRVVSEPIEMTQEFRYFDFASPWEQ 186


>gi|149022593|gb|EDL79487.1| NADH dehydrogenase (ubiquinone) Fe-S protein 3 (predicted), isoform
           CRA_a [Rattus norvegicus]
          Length = 248

 Score =  176 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 68/157 (43%), Positives = 104/157 (66%), Gaps = 1/157 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +++   G+Y+       V+    +   EL + +    ++   +FL+D  +  F ++ DL 
Sbjct: 56  KRLSAFGEYVAEILPKYVQQVQVTCFDELEICIHPDGVIPTITFLKDHTNAQFKSLADLT 115

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  +R NRF++VY+ LS ++N R+RVK    E  ++ SIV ++  A+W+EREVWDM+G
Sbjct: 116 AVDVPTRQNRFEIVYNLLSLRFNSRIRVKTYADELTAIDSIVSVHIAANWYEREVWDMFG 175

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHY 158
           +FF  HPDLRRILTDYGFEGHP RKDFP+TG+VE+++
Sbjct: 176 VFFFNHPDLRRILTDYGFEGHPFRKDFPLTGYVEIYF 212


>gi|11465870|ref|NP_066419.1| NADH dehydrogenase subunit 9 [Ochromonas danica]
 gi|10505203|gb|AAG18385.1|AF287134_10 NADH dehydrogenase subunit 9 [Ochromonas danica]
          Length = 181

 Score =  176 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 74/165 (44%), Positives = 105/165 (63%)

Query: 21  RFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLS 80
           +  +++  E+   +   +L+     L+   +  +  +  + G+DF S   RF + Y  LS
Sbjct: 17  QCFIHNNDEVCFIISHENLLHALKILKLHINYQYKLLTCISGIDFFSLKYRFCIAYDLLS 76

Query: 81  PKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFE 140
              N R+RVKI V E   + S V IY  A+W+ERE+WDMYGI+F  HPDLRRILTDYGFE
Sbjct: 77  LVNNSRVRVKIFVNEITPIESCVEIYKNANWWEREIWDMYGIYFYNHPDLRRILTDYGFE 136

Query: 141 GHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPW 185
           G+PLRKDFP++GFVEL YD   K+VV  P++L QE+R +++   W
Sbjct: 137 GYPLRKDFPLSGFVELRYDSIKKRVVLEPLQLAQEYRLFNYEIQW 181


>gi|9280606|gb|AAF86491.1|AF279444_1 NADH dehydrogenase subunit 9 [Lupinus albus]
          Length = 190

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 77/155 (49%), Positives = 103/155 (66%)

Query: 33  DVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIA 92
             +   L  L  FL+   +      ID+CGVD+ SR  RF+VVY+ LS +YN R+RV+ +
Sbjct: 32  YTNTDYLFQLLCFLKLHTYTRVQVSIDICGVDYPSRKRRFEVVYNLLSTRYNSRIRVQTS 91

Query: 93  VAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTG 152
             E   +  +V ++P A  +EREVWDM+G+    HPDLRRI TDYGFEGHPLRKD P++G
Sbjct: 92  ADEVTRISPVVSLFPSAGRWEREVWDMFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSG 151

Query: 153 FVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           +VE+ YDD  K+VV  P+E+ QE R +DF SPWE 
Sbjct: 152 YVEVRYDDPEKRVVSEPIEMTQEFRYFDFASPWEQ 186


>gi|153799814|gb|ABS50638.1| NADH dehydrogenase subunit 9 [Arabidopsis thaliana]
 gi|153799816|gb|ABS50639.1| NADH dehydrogenase subunit 9 [Arabidopsis thaliana]
          Length = 176

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 78/153 (50%), Positives = 103/153 (67%)

Query: 33  DVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIA 92
           D +   L  L  FL+   +      ID+CGVD  SR  RF+VVY+ LS +YN R+RV+ +
Sbjct: 24  DTNTDYLFQLLCFLKLHTYTRVQVSIDICGVDHPSRKRRFEVVYNLLSTRYNSRIRVQTS 83

Query: 93  VAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTG 152
             E   +  +V ++P A  +EREVWDM+G+ F  HPDLRRI TDYGFEGHPLRKD P++G
Sbjct: 84  ADEVTRISPVVSLFPSAGRWEREVWDMFGVSFINHPDLRRISTDYGFEGHPLRKDLPLSG 143

Query: 153 FVELHYDDKVKKVVYRPVELMQEHRDYDFLSPW 185
           +VE+ YDD  K+VV  P+E+ QE R +DF SPW
Sbjct: 144 YVEVRYDDPEKRVVSEPIEMTQEFRYFDFASPW 176


>gi|57014008|ref|YP_173479.1| NADH dehydrogenase subunit 9 [Nicotiana tabacum]
          Length = 190

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 78/155 (50%), Positives = 104/155 (67%)

Query: 33  DVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIA 92
           D +   L  L  FL+   +      ID+CGVD+ SR  RF+VVY+ LS +YN R+RV+ +
Sbjct: 32  DTNTDYLFQLLCFLKLHTYTRVQVSIDICGVDYPSRKQRFEVVYNLLSIRYNSRIRVQTS 91

Query: 93  VAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTG 152
             E   +  +V ++P A  +EREVWDM+G+    HPDLRRI TDYGFEGHPLRKD P++G
Sbjct: 92  ADEVTRISPVVSLFPSAGRWEREVWDMFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSG 151

Query: 153 FVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           +VE+ YDD  K+VV  P+E+ QE R +DF SPWE 
Sbjct: 152 YVEVRYDDPEKRVVSEPIEMTQEFRYFDFASPWEQ 186


>gi|325983287|ref|YP_004295689.1| NADH (or F420H2) dehydrogenase, subunit C [Nitrosomonas sp. AL212]
 gi|325532806|gb|ADZ27527.1| NADH (or F420H2) dehydrogenase, subunit C [Nitrosomonas sp. AL212]
          Length = 207

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 78/203 (38%), Positives = 113/203 (55%), Gaps = 23/203 (11%)

Query: 6   EDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDF 65
           E L   +       +        EL++ V+  D++ +   LRDD    F  +IDLCG+D+
Sbjct: 7   ETLAASLRGLLQNKLINLQMQRDELTIVVNAEDILEVSKVLRDDSALMFDTLIDLCGIDY 66

Query: 66  LSRSN-----------RFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWF 112
           L   N           RF V+YH LS   N+RLRV++        +V S+  ++P A+WF
Sbjct: 67  LIYGNDLSAKYDLKDRRFAVIYHLLSVVRNQRLRVRVLAENNEFPAVHSVTEVWPAANWF 126

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE +D+YGI F  HPDLRRILTDYGF G+P RKDFP+TG+VE+ YD++ ++V+Y+PV +
Sbjct: 127 EREAFDLYGIVFPDHPDLRRILTDYGFIGNPFRKDFPITGYVEMRYDEQQRRVIYQPVSI 186

Query: 173 MQEHRDYDFLSPWEGVNSLFAKE 195
                      P E    +  +E
Sbjct: 187 E----------PREITPLVIREE 199


>gi|7524986|ref|NP_050084.1| NADH dehydrogenase subunit 9 [Dictyostelium discoideum]
 gi|128861|sp|P22237|NDUS3_DICDI RecName: Full=NADH-ubiquinone oxidoreductase subunit 9
 gi|12910|emb|CAA36903.1| unnamed protein product [Dictyostelium discoideum]
 gi|4958889|dbj|BAA78066.1| NADH dehydrogenase subunit 9 [Dictyostelium discoideum]
          Length = 209

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 69/183 (37%), Positives = 115/183 (62%), Gaps = 4/183 (2%)

Query: 7   DLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFL 66
           +LG+++  S  G V+  +     L + V+   ++++  +L++        ++D+  VD L
Sbjct: 13  NLGEHLRLSIPGLVKKIMYKTHYLEIQVEKEKMLTVLKYLKEASKYQCNMLLDIVCVDCL 72

Query: 67  SRSN----RFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGI 122
           +       RF ++Y   S   N R+ +   V     + +  G++  + W ERE+WDM+GI
Sbjct: 73  NIEEIKIGRFKLIYVLNSIYNNTRVHLSTYVENNGIIETTSGLFESSVWLEREIWDMFGI 132

Query: 123 FFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFL 182
           +FE HPDLRRILTDYGF G+PL+KDFP+TG++E++YD   KK++Y+P+ELMQE+R+Y+F 
Sbjct: 133 YFEKHPDLRRILTDYGFVGYPLKKDFPITGYLEVYYDVNDKKIIYKPIELMQEYRNYNFG 192

Query: 183 SPW 185
           + W
Sbjct: 193 AVW 195


>gi|148695559|gb|EDL27506.1| mCG13496, isoform CRA_b [Mus musculus]
          Length = 244

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 71/157 (45%), Positives = 104/157 (66%), Gaps = 1/157 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +++   G+Y+       V+    S + EL + +    ++   +FLRD  +  F ++ DL 
Sbjct: 55  KQLSAFGEYVAEILPKYVQQVQVSCLDELEICIHPDGVIPTLTFLRDHTNAQFKSLADLT 114

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  +R NRF++VY+ LS ++N R+RVK    E   + SIV ++  A+W+EREVWDM+G
Sbjct: 115 AVDVPTRQNRFEIVYNLLSLRFNSRIRVKTYADELTPIDSIVSVHIAANWYEREVWDMFG 174

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHY 158
           +FF  HPDLRRILTDYGFEGHP RKDFP+TG+VE+H+
Sbjct: 175 VFFFNHPDLRRILTDYGFEGHPFRKDFPLTGYVEIHF 211


>gi|9280608|gb|AAF86492.1|AF279445_1 NADH dehydrogenase subunit 9 [Lupinus angustifolius]
 gi|9280610|gb|AAF86493.1|AF279446_1 NADH dehydrogenase subunit 9 [Lupinus luteus]
          Length = 190

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 78/155 (50%), Positives = 104/155 (67%)

Query: 33  DVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIA 92
           D +   L  L  FL+   +      ID+CGVD+ SR  RF+VVY+ LS +YN R+RV+ +
Sbjct: 32  DTNTDYLFQLLCFLKLHTYTRVQVSIDICGVDYPSRKRRFEVVYNLLSTRYNSRIRVQTS 91

Query: 93  VAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTG 152
             E   +  +V ++P A  +EREVWDM+G+    HPDLRRI TDYGFEGHPLRKD P++G
Sbjct: 92  ADEVTRISPVVSLFPSAGRWEREVWDMFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSG 151

Query: 153 FVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           +VE+ YDD  K+VV  P+E+ QE R +DF SPWE 
Sbjct: 152 YVEVRYDDPEKRVVSEPIEMTQEFRYFDFASPWEQ 186


>gi|187764084|ref|YP_001876533.1| NADH dehydrogenase subunit 9 [Dictyostelium fasciculatum]
 gi|160688792|gb|ABX45207.1| NADH dehydrogenase subunit 9 [Dictyostelium fasciculatum]
          Length = 207

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 71/198 (35%), Positives = 114/198 (57%), Gaps = 8/198 (4%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M R ++ +G  +       ++  V     L++ V+  DL+++ + L+++    +  ++D+
Sbjct: 6   MKRNMQ-IGLLLSEMCPKVIKKVVYKPNMLNVFVESKDLINILTILQNNTMFQYKMLLDI 64

Query: 61  CGVDFLSRSNR----FDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREV 116
             VD L+        F ++Y   S   N RL +   +   + + +    Y  A W ERE+
Sbjct: 65  VVVDCLNIDENKKGRFKLLYVLHSIYNNHRLNIVTYLNNNEIIKTSSLNYSSAVWLEREI 124

Query: 117 WDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEH 176
           WDMYGI+FE HPDLRRILTDYGF  +PLRKDFP+TG++E++YD   KK++Y+ +ELMQE 
Sbjct: 125 WDMYGIYFESHPDLRRILTDYGFSWYPLRKDFPLTGYLEVYYDINDKKIIYKSIELMQEF 184

Query: 177 RDYDFLSPW---EGVNSL 191
           R+Y+F   W   E    +
Sbjct: 185 RNYEFGKSWGDFEQKTYI 202


>gi|78485164|ref|YP_391089.1| NADH (or F420H2) dehydrogenase, subunit C [Thiomicrospira crunogena
           XCL-2]
 gi|123555686|sp|Q31HF8|NUOC_THICR RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|78363450|gb|ABB41415.1| NADH dehydrogenase chain C [Thiomicrospira crunogena XCL-2]
          Length = 223

 Score =  175 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 76/208 (36%), Positives = 110/208 (52%), Gaps = 37/208 (17%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M + + DL   I  +   ++  +   + EL++++     +S  + L+      F  +ID+
Sbjct: 1   MKQSVLDLQATIQETLGDAIVVSDIKLDELTVELAPEQSLSALTKLK--EKLGFDQLIDV 58

Query: 61  CGVDFLSRSNRFD---------------------------------VVYHFLSPKYNRRL 87
           CGVD+L+  +                                    VVYH LS + NRR+
Sbjct: 59  CGVDYLAFGDVTWETRKATNSGFSRGVFDFAEEDGEADTNIPRRFAVVYHLLSVENNRRV 118

Query: 88  RVKIAVA--EGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLR 145
           RVK+     +   V S+V ++  ADWFERE +D++GI F GHPDLRRILTDYGF GHPLR
Sbjct: 119 RVKVYPEDTQMPMVDSVVSVWNCADWFEREAFDLFGILFNGHPDLRRILTDYGFVGHPLR 178

Query: 146 KDFPVTGFVELHYDDKVKKVVYRPVELM 173
           KDFP+TG VE+ YD +  +VVY PV + 
Sbjct: 179 KDFPLTGHVEMRYDAEKGRVVYEPVTIE 206


>gi|323149051|ref|YP_004222820.1| NADH dehydrogenase subunit 9 [Vigna radiata]
 gi|308206757|gb|ADO19894.1| NADH dehydrogenase subunit 9 [Vigna radiata]
          Length = 190

 Score =  175 bits (443), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 78/155 (50%), Positives = 103/155 (66%)

Query: 33  DVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIA 92
           D     L  L  FL+   +      ID+CGVD+ SR  RF+VVY+ LS +YN R+RV+ +
Sbjct: 32  DTKTDYLFQLLCFLKLHTYTRVQVSIDICGVDYPSRKRRFEVVYNLLSTRYNSRIRVQTS 91

Query: 93  VAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTG 152
             E   +  +V ++P A  +EREVWDM+G+    HPDLRRI TDYGFEGHPLRKD P++G
Sbjct: 92  ADEVTRISPVVSLFPSAGRWEREVWDMFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSG 151

Query: 153 FVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           +VE+ YDD  K+VV  P+E+ QE R +DF SPWE 
Sbjct: 152 YVEVRYDDPEKRVVSEPIEMTQEFRYFDFASPWEQ 186


>gi|9280604|gb|AAF86490.1|AF279443_1 NADH dehydrogenase subunit 9 [Lupinus mutabilis]
          Length = 190

 Score =  175 bits (443), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 78/155 (50%), Positives = 104/155 (67%)

Query: 33  DVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIA 92
           D +   L  L  FL+   +      ID+CGVD+ SR  RF+VVY+ LS +YN R+RV+ +
Sbjct: 32  DTNTDYLFQLLCFLKLHTYTRVQVSIDICGVDYPSRKRRFEVVYNLLSTRYNSRIRVQTS 91

Query: 93  VAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTG 152
             E   +  +V ++P A  +EREVWDM+G+    HPDLRRI TDYGFEGHPLRKD P++G
Sbjct: 92  ADEVTRISPVVSLFPSAGRWEREVWDMFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSG 151

Query: 153 FVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           +VE+ YDD  K+VV  P+E+ QE R +DF SPWE 
Sbjct: 152 YVEVRYDDPEKRVVSEPIEMTQEFRYFDFASPWEQ 186


>gi|220934164|ref|YP_002513063.1| NADH (or F420H2) dehydrogenase, subunit C [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|254767814|sp|B8GNY7|NUOC_THISH RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|219995474|gb|ACL72076.1| NADH (or F420H2) dehydrogenase, subunit C [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 239

 Score =  175 bits (443), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 78/214 (36%), Positives = 106/214 (49%), Gaps = 43/214 (20%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  ++E L   +   F  +     ++ GEL+L V    +      LRDD    F  +IDL
Sbjct: 1   MSERLEKLAARLTERFKAAGGKVDSAYGELTLTVPAAAMTDTAKALRDD--LGFEMLIDL 58

Query: 61  CGVDFLSRS---------------------------------------NRFDVVYHFLSP 81
           CGVD+                                            RF VVYH LS 
Sbjct: 59  CGVDYQEYGVAEWSTEESSNQGFSRGVEKATFGRFIFDEVAERKAHEGPRFAVVYHLLSI 118

Query: 82  KYNRRLRVKIAVAEG--KSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGF 139
             N+RLR+K+   +     V ++  ++  ADW+ERE +D++GI FEGHPDLRRILTDYGF
Sbjct: 119 SANQRLRMKVFCEDEEFPVVSTVTDVWTSADWYEREAFDLFGIMFEGHPDLRRILTDYGF 178

Query: 140 EGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELM 173
            GHP RKDFP+ G VE+ YD +  +VVY+PV + 
Sbjct: 179 VGHPFRKDFPLVGHVEMRYDPEQARVVYQPVSIE 212


>gi|110225715|ref|YP_665720.1| NADH dehydrogenase subunit 9 [Mesostigma viride]
 gi|17222586|gb|AAL36759.1|AF353999_39 NADH dehydrogenase subunit 9 [Mesostigma viride]
          Length = 190

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 83/177 (46%), Positives = 111/177 (62%), Gaps = 1/177 (0%)

Query: 10  DYIVNSFSGSVRFAVNSVGELSLDVDCGDLVS-LCSFLRDDPHCCFVNIIDLCGVDFLSR 68
           ++IV      +       GE S+ V    ++     FLRD        +ID+ GVD+ SR
Sbjct: 11  EHIVAMVPKWIECVEYQKGEWSITVSNETVIDSFFHFLRDTEFAECEMLIDIAGVDYPSR 70

Query: 69  SNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHP 128
             RF++VY  LS  Y +R+RVK+ V E   VPS+  IYP A +FEREVWDMYG+FF  HP
Sbjct: 71  LKRFEIVYQLLSIHYGQRIRVKVKVDELSPVPSVTNIYPSAGYFEREVWDMYGVFFSHHP 130

Query: 129 DLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPW 185
           DLRRILTDYGFEG+PLRKDFP++G+ E+ YD    +V+  P+E+ QE R  +  +PW
Sbjct: 131 DLRRILTDYGFEGYPLRKDFPLSGYFEVRYDLSKTRVIVEPLEMSQEFRYLETRNPW 187


>gi|88608330|ref|YP_506318.1| NADH dehydrogenase I, C subunit [Neorickettsia sennetsu str.
           Miyayama]
 gi|123491985|sp|Q2GDX8|NUOC_NEOSM RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|88600499|gb|ABD45967.1| NADH dehydrogenase I, C subunit [Neorickettsia sennetsu str.
           Miyayama]
          Length = 186

 Score =  174 bits (442), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 83/185 (44%), Positives = 116/185 (62%), Gaps = 4/185 (2%)

Query: 17  SGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVY 76
           +  V   +N+ G   ++     LV L S L     C F  + D+ G+D+L R  R +VVY
Sbjct: 5   TTEVDALINAPGRCVVNSSLESLVELISHL---SSCGFEQLTDIFGIDYLEREKRIEVVY 61

Query: 77  HFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILT 135
             L  K NRR  VK++V    + VP+  G++  A+WFEREV+DMYG+ FEGHPDLRRILT
Sbjct: 62  LLLDLKRNRRCCVKVSVDPASEKVPTCCGVFSVANWFEREVYDMYGVVFEGHPDLRRILT 121

Query: 136 DYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEGVNSLFAKE 195
           DY FEG P+ KDFP+TG+ E+ YD + K+VVY  V+L Q++R +D L+PW+GV       
Sbjct: 122 DYEFEGFPMLKDFPLTGYKEVRYDLESKEVVYEKVDLSQDYRSFDSLTPWKGVGRPSDPF 181

Query: 196 DSKDD 200
           D + +
Sbjct: 182 DGRKE 186


>gi|294788081|ref|ZP_06753325.1| NADH dehydrogenase (ubiquinone), C subunit [Simonsiella muelleri
           ATCC 29453]
 gi|294484374|gb|EFG32057.1| NADH dehydrogenase (ubiquinone), C subunit [Simonsiella muelleri
           ATCC 29453]
          Length = 195

 Score =  174 bits (441), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 74/198 (37%), Positives = 108/198 (54%), Gaps = 18/198 (9%)

Query: 7   DLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFL 66
           DL               + +  E++++      + + + LRD     F +I+DLCGVD+ 
Sbjct: 5   DLQAACTEILGKKASKILLAFDEVTIECQPEHYLDIMTTLRDHEDLHFESIVDLCGVDYS 64

Query: 67  SRSNRFD------VVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADWFEREVWD 118
           +  N          V   +S K+N+R+RV++   +      PS+V IY  ADW+ERE +D
Sbjct: 65  TYKNEKWQGKRFAAVSQLVSVKHNQRVRVRVWAQDDDLPLVPSVVNIYNSADWYEREAFD 124

Query: 119 MYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRD 178
           MYGI F  HPDLRRILTDYGF GHP RKDFPV+G+VE+ YD+  K+V+Y+PV +      
Sbjct: 125 MYGIIFNEHPDLRRILTDYGFVGHPFRKDFPVSGYVEMRYDETEKRVIYQPVTIE----- 179

Query: 179 YDFLSPWEGVNSLFAKED 196
                P E    +  +E+
Sbjct: 180 -----PREITPRVVREEN 192


>gi|89280732|ref|YP_514683.1| NADH dehydrogenase subunit 9 [Oryza sativa Indica Group]
 gi|289065051|ref|YP_003433862.1| NADH dehydrogenase subunit 9 [Oryza rufipogon]
 gi|1101745|dbj|BAA08794.1| NADH dehydrogenase subunit 9 [Oryza sativa Japonica Group]
 gi|56784284|dbj|BAD81966.1| Mitochondrion NADH dehydrogenase subunit 9 [Oryza sativa Japonica
           Group]
 gi|74100099|gb|AAZ99263.1| NADH dehydrogenase subunit 9 [Oryza sativa Indica Group]
 gi|74100154|gb|AAZ99317.1| NADH dehydrogenase subunit 9 [Oryza sativa Japonica Group]
 gi|74100208|gb|AAZ99370.1| NADH dehydrogenase subunit 9 [Oryza sativa Japonica Group]
 gi|164422243|gb|ABY55216.1| NADH dehydrogenase subunit 9 [Bambusa oldhamii]
 gi|285026133|dbj|BAI67966.1| NADH dehydrogenase subunit 9 [Oryza rufipogon]
 gi|285026183|dbj|BAI68015.1| NADH dehydrogenase subunit 9 [Oryza sativa Indica Group]
 gi|285026196|dbj|BAI68028.1| NADH dehydrogenase subunit 9 [Oryza sativa Indica Group]
          Length = 190

 Score =  174 bits (440), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 76/148 (51%), Positives = 99/148 (66%)

Query: 40  VSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV 99
             L  FL+   +      ID+CGVD  SR  RF+VV++ LS +YN R+RV+ +  E   +
Sbjct: 39  FPLLCFLKWHTYTRVQVSIDICGVDHPSRKRRFEVVHNLLSTRYNSRIRVQTSADEVTRI 98

Query: 100 PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYD 159
             +V  +P A  +EREVWDM G+    HPDLRRI TDYGFEGHPLRKDFP++G+VE+ YD
Sbjct: 99  SPVVSPFPSAGRWEREVWDMSGVSSINHPDLRRISTDYGFEGHPLRKDFPLSGYVEVRYD 158

Query: 160 DKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           D  K+VV  P+E+ QE R +DF SPWE 
Sbjct: 159 DPEKRVVSEPIEMTQEFRYFDFASPWEQ 186


>gi|288942132|ref|YP_003444372.1| NADH (or F420H2) dehydrogenase subunit C [Allochromatium vinosum
           DSM 180]
 gi|288897504|gb|ADC63340.1| NADH (or F420H2) dehydrogenase, subunit C [Allochromatium vinosum
           DSM 180]
          Length = 235

 Score =  174 bits (440), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 74/202 (36%), Positives = 106/202 (52%), Gaps = 30/202 (14%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
             +++ L   I   F+ S    +++  EL+L V    L+ +   LRD     F  +IDLC
Sbjct: 9   TARVDALVAAIRAHFAESDFELIDAFDELTLVVPAERLLDVARTLRDHDDFRFEQLIDLC 68

Query: 62  GVDFLSRSNRFD-----------------------------VVYHFLSPKYNRRLRVKIA 92
           GVD+ +                                   VV H LS  +N RLR+++ 
Sbjct: 69  GVDYAAYGCSEWETDEASTTGFGRGVDRDLRIEADDPKRFGVVVHLLSLAHNHRLRLRVH 128

Query: 93  VAEGKSVPS-IVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVT 151
           V     +   ++ ++  A+WFERE +D+YGI F GHPDLRRILTDYGF GHP RKDFP++
Sbjct: 129 VGAAAPIVDSLIPVWDSANWFEREAFDLYGILFRGHPDLRRILTDYGFVGHPFRKDFPLS 188

Query: 152 GFVELHYDDKVKKVVYRPVELM 173
           G VE+ YD ++K+VVY PV + 
Sbjct: 189 GQVEMRYDPELKRVVYEPVSIE 210


>gi|94502590|ref|YP_588298.1| NADH dehydrogenase subunit 9 [Zea mays subsp. mays]
 gi|114151581|ref|YP_740371.1| NADH dehydrogenase subunit 9 [Zea perennis]
 gi|114151613|ref|YP_740429.1| NADH dehydrogenase subunit 9 [Zea luxurians]
 gi|114151647|ref|YP_740398.1| NADH dehydrogenase subunit 9 [Zea mays subsp. parviglumis]
 gi|115278549|ref|YP_762327.1| NADH dehydrogenase subunit 9 [Sorghum bicolor]
 gi|115278619|ref|YP_762490.1| NADH dehydrogenase subunit 9 [Tripsacum dactyloides]
 gi|40795029|gb|AAR91073.1| NADH dehydrogenase subunit 9 [Zea mays]
 gi|93116054|gb|ABE98687.1| NADH dehydrogenase subunit 9 [Zea mays subsp. mays]
 gi|93116098|gb|ABE98730.1| NADH dehydrogenase subunit 9 [Zea mays subsp. mays]
 gi|93116146|gb|ABE98777.1| NADH dehydrogenase subunit 9 [Zea mays subsp. mays]
 gi|102567915|gb|ABF70832.1| NADH dehydrogenase subunit 9 [Zea perennis]
 gi|102567980|gb|ABF70864.1| NADH dehydrogenase subunit 9 [Zea mays subsp. parviglumis]
 gi|102579647|gb|ABF70927.1| NADH dehydrogenase subunit 9 [Zea mays subsp. mays]
 gi|110287609|gb|ABG65655.1| NADH dehydrogenase subunit 9 [Zea luxurians]
 gi|114309670|gb|ABI60887.1| NADH dehydrogenase subunit 9 [Sorghum bicolor]
 gi|114432110|gb|ABI74659.1| NADH dehydrogenase subunit 9 [Tripsacum dactyloides]
          Length = 190

 Score =  174 bits (440), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 76/148 (51%), Positives = 99/148 (66%)

Query: 40  VSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV 99
             L  FL+   +      ID+CGVD  SR  RF+VV++ LS +YN R+RV+ +  E   +
Sbjct: 39  FPLLCFLKWHTYTRVQVSIDICGVDHPSRKRRFEVVHNLLSTRYNSRIRVQTSADEVTRI 98

Query: 100 PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYD 159
             +V  +P A  +EREVWDM G+    HPDLRRI TDYGFEGHPLRKDFP++G+VE+ YD
Sbjct: 99  SPVVSPFPSAGRWEREVWDMSGVSSINHPDLRRISTDYGFEGHPLRKDFPLSGYVEVRYD 158

Query: 160 DKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           D  K+VV  P+E+ QE R +DF SPWE 
Sbjct: 159 DPEKRVVSEPIEMTQEFRYFDFASPWEQ 186


>gi|160688744|gb|ABX45160.1| NADH dehydrogenase subunit 9 [Polysphondylium pallidum]
          Length = 207

 Score =  174 bits (440), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 66/182 (36%), Positives = 108/182 (59%), Gaps = 4/182 (2%)

Query: 8   LGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLS 67
           +G  +       ++  + + G L + +D  DL ++ S L+ +       ++D+  +D L+
Sbjct: 12  IGTILAKLVPNLIKKIIYTPGNLDVIIDSKDLNNVLSILKLNTIMQCKMLLDIVCIDCLN 71

Query: 68  RSNR----FDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIF 123
                   F ++Y   S   N R+ V + +   +++ S   ++  A W ERE+WDMYGI+
Sbjct: 72  IEENKLGRFKIIYVLNSIFNNSRIHVIVYLKNNETIDSCSSLFSSAVWLEREIWDMYGIY 131

Query: 124 FEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLS 183
           F  HPDLRRILTDYGF  +PL+KDFP+TG++E++YD   KK++Y+P+ELMQE R Y++  
Sbjct: 132 FANHPDLRRILTDYGFSWYPLKKDFPLTGYIEVYYDINDKKIIYKPIELMQEFRMYEYGI 191

Query: 184 PW 185
            W
Sbjct: 192 SW 193


>gi|291498617|gb|ADE08091.1| nad9 [Triticum aestivum]
          Length = 190

 Score =  174 bits (440), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 76/148 (51%), Positives = 100/148 (67%)

Query: 40  VSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV 99
             L  FL+   +      ID+CGVD  SR  RF+VV++ LS +YN R+RV+ +  E   +
Sbjct: 39  FPLLCFLKWHTYTRVQVSIDICGVDHPSRKRRFEVVHNLLSTRYNSRIRVQTSADEVTRI 98

Query: 100 PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYD 159
             +V ++P A  +EREVWDM G+    HPDLRRI TDYGFEGHPLRKDFP++G+VE+ YD
Sbjct: 99  SPVVSLFPSAGRWEREVWDMSGVSSINHPDLRRISTDYGFEGHPLRKDFPLSGYVEVRYD 158

Query: 160 DKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           D  K+VV  P+E+ QE R +DF SPWE 
Sbjct: 159 DPEKRVVSEPIEMTQEFRYFDFASPWEQ 186


>gi|11466473|ref|NP_038176.1| NADH dehydrogenase subunit 9 [Chrysodidymus synuroideus]
 gi|7110470|gb|AAF36942.1|AF222718_16 NADH dehydrogenase subunit 9 [Chrysodidymus synuroideus]
          Length = 177

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 75/181 (41%), Positives = 107/181 (59%), Gaps = 6/181 (3%)

Query: 6   EDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDF 65
           + L   I   F   +        E  + +   +L      L+   +  F  +  + GVD 
Sbjct: 3   KTLKKIIPFIFFQKI------NNEDLIILLPKNLRFSLLCLKKHINYQFSLLSYIAGVDL 56

Query: 66  LSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFE 125
           L    RF VVY  LS  +N RLR+K+ + E  ++PS+  IY  ++W+EREVWD++GI+FE
Sbjct: 57  LGCKYRFCVVYDLLSLSFNIRLRIKLFITEVNTIPSVTDIYVNSNWWEREVWDLFGIYFE 116

Query: 126 GHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPW 185
            HPDLRRILTDYGFEG+P+RKDFP+ G+ EL YD+  K++V   VEL Q  R ++F  PW
Sbjct: 117 NHPDLRRILTDYGFEGYPMRKDFPLYGYTELRYDESKKQIVVESVELSQNFRLFEFEMPW 176

Query: 186 E 186
           +
Sbjct: 177 Q 177


>gi|505273|emb|CAA56168.1| NADH dehydrogenase [Solanum tuberosum]
          Length = 190

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 77/155 (49%), Positives = 104/155 (67%)

Query: 33  DVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIA 92
           D +   L  L  F++   +      ID+CGVD+ SR  RF+VVY+ LS +YN R+RV+ +
Sbjct: 32  DTNTDYLFQLLCFMKLHTYTRVQVSIDICGVDYPSRKQRFEVVYNLLSIRYNSRIRVQTS 91

Query: 93  VAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTG 152
             E   +  +V ++P A  +EREVWDM+G+    HPDLRRI TDYGFEGHPLRKD P++G
Sbjct: 92  ADEVTRISPVVSLFPSAGRWEREVWDMFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSG 151

Query: 153 FVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           +VE+ YDD  K+VV  P+E+ QE R +DF SPWE 
Sbjct: 152 YVEVRYDDPEKRVVSEPIEMTQEFRYFDFASPWEQ 186


>gi|114321117|ref|YP_742800.1| NADH (or F420H2) dehydrogenase, subunit C [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|122311304|sp|Q0A777|NUOC_ALHEH RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|114227511|gb|ABI57310.1| NADH dehydrogenase subunit C [Alkalilimnicola ehrlichii MLHE-1]
          Length = 247

 Score =  173 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 74/219 (33%), Positives = 107/219 (48%), Gaps = 46/219 (21%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNS--VGELSLDVDCGDLVSLCSFLRDDPHCCFVNII 58
           M +K+E L   +       +R  V     GEL+++V   DL    + LRD     F  ++
Sbjct: 1   MAKKLEQLQTAVQERLGERLRDCVLDADRGELAIEVAPADLHQAMTTLRDAEGLRFDMLM 60

Query: 59  DLCGVDFLSRSNRFDVV------------------------------------------Y 76
           DL GVD+ +                                                  Y
Sbjct: 61  DLAGVDYAAWGEDEWFTDTAEGTGFSRGVQGNNFARLGITGIYGVQEITENTGRRFAAVY 120

Query: 77  HFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRIL 134
             LS + N+RLRV+    + +     S+V ++ GA+WFERE +D+YGI F+GHPDLRRIL
Sbjct: 121 QLLSVELNQRLRVRCFCEDDRFPVLDSVVDVWSGANWFEREAFDLYGIIFDGHPDLRRIL 180

Query: 135 TDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELM 173
           TDYGF GHP RKDFP+ G VE+ YD++ ++V+Y+PV + 
Sbjct: 181 TDYGFVGHPFRKDFPLIGNVEVRYDEQKRRVIYQPVSIE 219


>gi|58582857|ref|YP_201873.1| NADH dehydrogenase subunit C [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84624722|ref|YP_452094.1| NADH dehydrogenase subunit C [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188577694|ref|YP_001914623.1| NADH dehydrogenase subunit C [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|81311785|sp|Q5GXT3|NUOC_XANOR RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|123521395|sp|Q2P0V7|NUOC_XANOM RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|218534329|sp|B2SVL7|NUOC_XANOP RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|58427451|gb|AAW76488.1| NADH-ubiquinone oxidoreductase NQO5 subunit [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84368662|dbj|BAE69820.1| NADH-ubiquinone oxidoreductase NQO5 subunit [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188522146|gb|ACD60091.1| NADH-quinone oxidoreductase chain c [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 250

 Score =  173 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 77/220 (35%), Positives = 106/220 (48%), Gaps = 51/220 (23%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  +     D +   F+G+        GE++L+V   D  + C  LRD     F  + DL
Sbjct: 1   MAEQASSFTDRLAARFAGAQIAVALPRGEVTLEVAAADWHATCLALRD--ELGFEQLSDL 58

Query: 61  CGVDFLSR-----------------------------------------------SNRFD 73
           CGVD+L                                                   RF 
Sbjct: 59  CGVDYLGYGSGEWDTADVSSQGFSRGVEGKAVGRFAWGEFPSQESSAGAQPQQLPKQRFA 118

Query: 74  VVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADWFEREVWDMYGIFFEGHPDLR 131
           VV   +S ++N+RLRV+    + +     S+  I+PG +WFERE +D++GI F+GHPDLR
Sbjct: 119 VVAQLISYQHNQRLRVRCYAPDEQVPLVASVTDIWPGVNWFEREAFDLFGIVFDGHPDLR 178

Query: 132 RILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVE 171
           RILTDYGF GHP RKDFP+ G VE+ YD++ K+VVY PV 
Sbjct: 179 RILTDYGFVGHPFRKDFPLIGNVEVRYDEERKRVVYEPVT 218


>gi|121604332|ref|YP_981661.1| NADH (or F420H2) dehydrogenase subunit C [Polaromonas
           naphthalenivorans CJ2]
 gi|218534341|sp|A1VM62|NUOC_POLNA RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|120593301|gb|ABM36740.1| NADH dehydrogenase subunit C [Polaromonas naphthalenivorans CJ2]
          Length = 204

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 79/201 (39%), Positives = 116/201 (57%), Gaps = 18/201 (8%)

Query: 4   KIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGV 63
            +  LG+ I     G  +    ++GE+++ V   D ++  + LRD P C F  ++DLCG+
Sbjct: 9   SVSQLGETIALVLGGKAKSVKIALGEITVTVAAADYLAAATLLRDAPGCKFEQLLDLCGL 68

Query: 64  DFLSRSN------RFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWFERE 115
           D+    N      R+ V  H LS   N+R+R+K+   +     V S+ GI+  A+WFERE
Sbjct: 69  DYSEYKNGQYDGLRYCVSSHLLSVSLNQRVRLKVFCPDDDFPVVDSVNGIWNSANWFERE 128

Query: 116 VWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQE 175
            +D+YGI FEGH DLRRILTDYGF GHP RKDFP TG VE+ YD + K+V+Y+PV +   
Sbjct: 129 AFDLYGIVFEGHNDLRRILTDYGFIGHPFRKDFPTTGHVEMRYDAEQKRVIYQPVTIE-- 186

Query: 176 HRDYDFLSPWEGVNSLFAKED 196
                   P E +  +  +++
Sbjct: 187 --------PREMIPRVIREDN 199


>gi|319779200|ref|YP_004130113.1| NADH-ubiquinone oxidoreductase chain C [Taylorella equigenitalis
           MCE9]
 gi|317109224|gb|ADU91970.1| NADH-ubiquinone oxidoreductase chain C [Taylorella equigenitalis
           MCE9]
          Length = 204

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 84/207 (40%), Positives = 113/207 (54%), Gaps = 24/207 (11%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +R IEDL   ++ S        V  V E+++DV   D V  C  LRD     F   +DLC
Sbjct: 1   MRDIEDLKASLIQSIGDKF-PIVEHVHEITIDVPSSDWVQTCITLRDHVDLRFDIAVDLC 59

Query: 62  GVDFLSRS-----------NRFDVVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPG 108
           GVD+               NR+ VV H LS  +N R+RV+    +     V S+  ++  
Sbjct: 60  GVDYSKYGFPGNSTISKFPNRYAVVLHLLSTVHNSRVRVRTFALDDELPMVRSLTDVWAN 119

Query: 109 ADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYR 168
             WFERE +DM+GI FEGHPDLRRILTDYGF GHPLRKDFPV+G+VE+ +D++  +VVY+
Sbjct: 120 IGWFEREAFDMFGIVFEGHPDLRRILTDYGFIGHPLRKDFPVSGYVEMIFDEEQNRVVYQ 179

Query: 169 PVELMQEHRDYDFLSPWEGVNSLFAKE 195
           PV +           P E    +  +E
Sbjct: 180 PVSIE----------PREITPRIIREE 196


>gi|160872520|ref|ZP_02062652.1| NADH-quinone oxidoreductase, c subunit [Rickettsiella grylli]
 gi|159121319|gb|EDP46657.1| NADH-quinone oxidoreductase, c subunit [Rickettsiella grylli]
          Length = 230

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 72/204 (35%), Positives = 109/204 (53%), Gaps = 33/204 (16%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M   +  L   +   F+  ++    +  E++L++    L  +   LRD+    F  ++D+
Sbjct: 1   MSDVVSQL-QKLNQRFNSVIQEIAVARNEINLEISAEKLKEVGLALRDEADFKFELLVDV 59

Query: 61  CGVDFLSR-------------------------------SNRFDVVYHFLSPKYNRRLRV 89
           C VD+                                    RF VVYH LS  +N+RLR+
Sbjct: 60  CVVDYAEYGVSEWTTEQSTLTGFERGVDKTGDLHPINWNKPRFAVVYHLLSLTHNQRLRL 119

Query: 90  KIAVAEGKS-VPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDF 148
           +I        VPS++ ++P A+W+ERE +D++G+FF+GHPDLRR+LTDYGF GHP RKDF
Sbjct: 120 RIFAQGEPPQVPSVIKLWPAANWYEREAFDLFGVFFDGHPDLRRLLTDYGFVGHPFRKDF 179

Query: 149 PVTGFVELHYDDKVKKVVYRPVEL 172
           P+TG VE+ YD    +VVY+PV +
Sbjct: 180 PLTGHVEVRYDATKGRVVYQPVTI 203


>gi|166712612|ref|ZP_02243819.1| NADH dehydrogenase subunit C [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 250

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 76/220 (34%), Positives = 106/220 (48%), Gaps = 51/220 (23%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  +     D +   F+G+        GE++L+V   D  + C  LRD     F  + DL
Sbjct: 1   MAEQASSFTDRLAARFAGAQIAVALPRGEVTLEVASADWHATCLALRD--ELGFEQLSDL 58

Query: 61  CGVDFLSR-----------------------------------------------SNRFD 73
           CG+D+L                                                   RF 
Sbjct: 59  CGIDYLGYGSGEWDTADVSSQGFSRGVEGKAVGRFAWGEFPSQESSAGAQPQQLPKQRFA 118

Query: 74  VVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADWFEREVWDMYGIFFEGHPDLR 131
           VV   +S ++N+RLRV+    + +     S+  I+PG +WFERE +D++GI F+GHPDLR
Sbjct: 119 VVAQLISYQHNQRLRVRCYAPDEQVPVVASVTDIWPGVNWFEREAFDLFGIVFDGHPDLR 178

Query: 132 RILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVE 171
           RILTDYGF GHP RKDFP+ G VE+ YD++ K+VVY PV 
Sbjct: 179 RILTDYGFVGHPFRKDFPLIGNVEVRYDEERKRVVYEPVT 218


>gi|21243430|ref|NP_643012.1| NADH dehydrogenase subunit C [Xanthomonas axonopodis pv. citri str.
           306]
 gi|81860559|sp|Q8PJ42|NUOC_XANAC RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|21108983|gb|AAM37548.1| NADH-ubiquinone oxidoreductase NQO5 subunit [Xanthomonas axonopodis
           pv. citri str. 306]
          Length = 250

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 78/220 (35%), Positives = 106/220 (48%), Gaps = 51/220 (23%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  +     D +   F+G+        GE++L+V   D  + C  LRD     F  + DL
Sbjct: 1   MAEQASSFTDRLAARFAGAQIAVALPRGEVTLEVAAADWHATCLALRD--ELGFEQLSDL 58

Query: 61  CGVDFLSR-----------------------------------------------SNRFD 73
           CGVD+L                                                   RF 
Sbjct: 59  CGVDYLGYGSDEWDTADVSSQGFSRGVEGKAVGRFAWGEFPSQESSAGAQPQQLPKQRFA 118

Query: 74  VVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADWFEREVWDMYGIFFEGHPDLR 131
           VV   +S ++N+RLRV+    + +     S+  I+PG +WFERE +D++GI F+GHPDLR
Sbjct: 119 VVAQLISYQHNQRLRVRCYAPDEQVPVVASVTDIWPGVNWFEREAFDLFGIVFDGHPDLR 178

Query: 132 RILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVE 171
           RILTDYGF GHP RKDFP+ G VE+ YDD+ K+VVY PV 
Sbjct: 179 RILTDYGFVGHPFRKDFPLIGNVEVRYDDERKRVVYEPVT 218


>gi|324309726|gb|ADY18507.1| NADH dehydrogenase subunit 9-ribosomal protein S14 fusion protein
           [Phaeodactylum tricornutum]
          Length = 284

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 70/175 (40%), Positives = 104/175 (59%), Gaps = 2/175 (1%)

Query: 12  IVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNR 71
           I       +     S  E S  +    L  + + +++  +C F  +  + GVD+   S+R
Sbjct: 8   IAKILP--ILRFELSRTEGSFLIQTNLLPEILTMVKNHFNCQFKVLTCISGVDYPESSHR 65

Query: 72  FDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLR 131
           F +VY  LS K N RLR+K+ + E   + S+  I  GA W+E E+WDM+G+FF    +L 
Sbjct: 66  FKIVYELLSIKRNSRLRLKVILDELSPINSVEKIISGASWWECEIWDMFGVFFLNQDNLT 125

Query: 132 RILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWE 186
           R+LTDYGF+G+PLRKDFP++GF E  Y     +VVY  +E+ QE+R ++FLSPWE
Sbjct: 126 RLLTDYGFQGYPLRKDFPLSGFTESRYSSIKSRVVYENLEMSQEYRTFEFLSPWE 180


>gi|1507657|dbj|BAA11532.1| subunit 9 of NADH dehydrogenase [Arabidopsis thaliana]
          Length = 190

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 77/155 (49%), Positives = 103/155 (66%)

Query: 33  DVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIA 92
           D +   L  L  FL+   +      ID+CGVD  SR  RF+VVY+ LS +YN R+RV+ +
Sbjct: 32  DTNTDYLFQLLCFLKLHTYTRVQVSIDICGVDHPSRKRRFEVVYNLLSTRYNSRIRVQTS 91

Query: 93  VAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTG 152
             E   +  +V ++P A  +EREVWDM+G+ F  HPDL RI TDYGFEGHPLRKD P++G
Sbjct: 92  ADEVTRISPVVSLFPSAGRWEREVWDMFGVSFINHPDLPRISTDYGFEGHPLRKDLPLSG 151

Query: 153 FVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           +V++ YDD  K+VV  P+E+ QE R +DF SPWE 
Sbjct: 152 YVQVRYDDPEKRVVSEPIEMTQEFRYFDFASPWEQ 186


>gi|282767720|gb|ADA85897.1| NADH hydrogenase subunit 9 [Allium cepa]
          Length = 186

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 73/147 (49%), Positives = 100/147 (68%)

Query: 40  VSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV 99
             +  FL+   +      ID+CGVD  SR  RF+VV++ LS +YN R+RV+ +  E   +
Sbjct: 39  FPVLCFLKLHTYTRVQVSIDICGVDHPSRKRRFEVVHNLLSTRYNSRIRVQTSADEVTRI 98

Query: 100 PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYD 159
             +V ++P A  +EREVWDM+G+    HPDLRRI TD+GFEGHPLRKDFP++G+VE+ YD
Sbjct: 99  SPVVSLFPSAGRWEREVWDMFGVSSINHPDLRRISTDHGFEGHPLRKDFPLSGYVEVRYD 158

Query: 160 DKVKKVVYRPVELMQEHRDYDFLSPWE 186
           D  K+VV  P+E+ QE R +D  SPWE
Sbjct: 159 DPEKRVVSEPIEMTQEFRYFDSASPWE 185


>gi|294624676|ref|ZP_06703346.1| NADH dehydrogenase subunit C [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292601032|gb|EFF45099.1| NADH dehydrogenase subunit C [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 250

 Score =  172 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 76/220 (34%), Positives = 105/220 (47%), Gaps = 51/220 (23%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  +     D +   F+G+        GE++L+V   D  + C  LRD     F  + DL
Sbjct: 1   MAEQASSFTDRLAARFAGAQIAVALPRGEVTLEVAAADWHATCLALRD--ELGFEQLSDL 58

Query: 61  CGVDFLSRSNRFD----------------------------------------------- 73
           CGVD+L   +                                                  
Sbjct: 59  CGVDYLGYGSDEWDTADVSSQGFSRGVEGKAVGRFAWGEFPSQESSAGAQPQQLPKRRFA 118

Query: 74  VVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADWFEREVWDMYGIFFEGHPDLR 131
           VV   +S ++N+RLRV+    + +     S+  I+PG +WFERE +D++GI F+GHPDLR
Sbjct: 119 VVAQLISYQHNQRLRVRCYAPDEQVPVVASVTDIWPGVNWFEREAFDLFGIVFDGHPDLR 178

Query: 132 RILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVE 171
           RILTDYGF GHP RKDFP+ G VE+ YDD+ K+VVY PV 
Sbjct: 179 RILTDYGFVGHPFRKDFPLIGNVEVRYDDERKRVVYEPVT 218


>gi|78048407|ref|YP_364582.1| NADH dehydrogenase subunit C [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|123584673|sp|Q3BRN1|NUOC_XANC5 RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|78036837|emb|CAJ24530.1| NADH-ubiquinone oxidoreductase NQO5 subunit [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
          Length = 250

 Score =  172 bits (435), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 77/220 (35%), Positives = 106/220 (48%), Gaps = 51/220 (23%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  +     D +   F+G+        GE++L+V   D  + C  LRD     F  + DL
Sbjct: 1   MAEQASSFTDRLAARFAGAQIAVALPRGEVTLEVAAADWHATCLALRD--ELGFEQLSDL 58

Query: 61  CGVDFLSR-----------------------------------------------SNRFD 73
           CGVD+L                                                   RF 
Sbjct: 59  CGVDYLGYGSDEWDTADVSSQGFSRGVEGKAVGRFAWGEFPSQESSAGAQPQQLPKQRFA 118

Query: 74  VVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADWFEREVWDMYGIFFEGHPDLR 131
           VV   +S ++N+RLRV+    + +     S+  I+PG +WFERE +D++GI F+GHPDLR
Sbjct: 119 VVAQLISYQHNQRLRVRCYAPDEQVPVVASLTDIWPGVNWFEREAFDLFGIVFDGHPDLR 178

Query: 132 RILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVE 171
           RILTDYGF GHP RKDFP+ G VE+ YD++ K+VVY PV 
Sbjct: 179 RILTDYGFVGHPFRKDFPLIGNVEVRYDEERKRVVYEPVT 218


>gi|325924677|ref|ZP_08186115.1| NADH dehydrogenase subunit C [Xanthomonas perforans 91-118]
 gi|325544883|gb|EGD16228.1| NADH dehydrogenase subunit C [Xanthomonas perforans 91-118]
          Length = 250

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 77/220 (35%), Positives = 106/220 (48%), Gaps = 51/220 (23%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  +     D +   F+G+        GE++L+V   D  + C  LRD     F  + DL
Sbjct: 1   MAEQASSFTDRLAARFAGAQIAVALPRGEVTLEVAAADWHATCLALRD--ELGFEQLSDL 58

Query: 61  CGVDFLSR-----------------------------------------------SNRFD 73
           CGVD+L                                                   RF 
Sbjct: 59  CGVDYLGYGSDEWDTADVSSQGFSRGVEGKAVGRFAWGEFPSQESSSGAQPQQLPKQRFA 118

Query: 74  VVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADWFEREVWDMYGIFFEGHPDLR 131
           VV   +S ++N+RLRV+    + +     S+  I+PG +WFERE +D++GI F+GHPDLR
Sbjct: 119 VVAQLISYQHNQRLRVRCYAPDEQVPVVASLTDIWPGVNWFEREAFDLFGIVFDGHPDLR 178

Query: 132 RILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVE 171
           RILTDYGF GHP RKDFP+ G VE+ YD++ K+VVY PV 
Sbjct: 179 RILTDYGFVGHPFRKDFPLIGNVEVRYDEERKRVVYEPVT 218


>gi|21231958|ref|NP_637875.1| NADH dehydrogenase subunit C [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66767915|ref|YP_242677.1| NADH dehydrogenase subunit C [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188991031|ref|YP_001903041.1| NADH dehydrogenase subunit C [Xanthomonas campestris pv. campestris
           str. B100]
 gi|81306108|sp|Q4UWB6|NUOC_XANC8 RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|81860265|sp|Q8P7T4|NUOC_XANCP RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|218534327|sp|B0RRA0|NUOC_XANCB RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|21113689|gb|AAM41799.1| NADH-ubiquinone oxidoreductase NQO5 subunit [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|66573247|gb|AAY48657.1| NADH-ubiquinone oxidoreductase NQO5 subunit [Xanthomonas campestris
           pv. campestris str. 8004]
 gi|167732791|emb|CAP50985.1| NADH-ubiquinone oxidoreductase NQO5 subunit [Xanthomonas campestris
           pv. campestris]
          Length = 250

 Score =  171 bits (434), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 78/220 (35%), Positives = 106/220 (48%), Gaps = 51/220 (23%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  +     D +   F+G+    V   GE++L+V      + C  LRD     F  + DL
Sbjct: 1   MAEQASSFTDRLAARFAGAQISVVQPRGEVTLEVAAAQWHATCLALRD--ELGFEQLSDL 58

Query: 61  CGVDFLSRS-----------------------------------------------NRFD 73
           CGVD+L                                                   RF 
Sbjct: 59  CGVDYLGYGSDEWDTADVSSQGFSRGVEGKALGRFAWGEFPSQESSNGAQPQQLPTQRFA 118

Query: 74  VVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADWFEREVWDMYGIFFEGHPDLR 131
           VV   +S ++N+RLRV+    + +     S+  I+PG +WFERE +D++GI F+GHPDLR
Sbjct: 119 VVAQLISYQHNQRLRVRCYAPDEQVPVVASLTDIWPGVNWFEREAFDLFGIVFDGHPDLR 178

Query: 132 RILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVE 171
           RILTDYGF GHP RKDFP+ G VE+ YDD+ K+VVY PV 
Sbjct: 179 RILTDYGFVGHPFRKDFPLIGNVEVRYDDERKRVVYEPVT 218


>gi|325915541|ref|ZP_08177852.1| NADH dehydrogenase subunit C [Xanthomonas vesicatoria ATCC 35937]
 gi|325538257|gb|EGD09942.1| NADH dehydrogenase subunit C [Xanthomonas vesicatoria ATCC 35937]
          Length = 250

 Score =  171 bits (434), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 77/220 (35%), Positives = 106/220 (48%), Gaps = 51/220 (23%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  +     D +   F+G+        GE++L+V   D  + C  LRD     F  + DL
Sbjct: 1   MAEQASSFTDRLAARFAGAQIAVALPRGEVTLEVAAADWHATCLALRD--ELGFEQLSDL 58

Query: 61  CGVDFLSR-----------------------------------------------SNRFD 73
           CGVD+L                                                   RF 
Sbjct: 59  CGVDYLGYGSDEWDTADVSSQGFSRGVEGKAVGRFGWGEFPSQESSTGAHPQHMPKQRFA 118

Query: 74  VVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADWFEREVWDMYGIFFEGHPDLR 131
           VV   +S ++N+RLRV+    + +     S+  I+PG +WFERE +D++GI F+GHPDLR
Sbjct: 119 VVAQLISYQHNQRLRVRCYAPDEQVPVVASVTDIWPGVNWFEREAFDLFGIVFDGHPDLR 178

Query: 132 RILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVE 171
           RILTDYGF GHP RKDFP+ G VE+ YD++ K+VVY PV 
Sbjct: 179 RILTDYGFVGHPFRKDFPLIGNVEVRYDEERKRVVYEPVT 218


>gi|294666775|ref|ZP_06732009.1| NADH dehydrogenase subunit C [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292603436|gb|EFF46853.1| NADH dehydrogenase subunit C [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 250

 Score =  171 bits (433), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 77/220 (35%), Positives = 106/220 (48%), Gaps = 51/220 (23%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  +     D +   F+G+        GE++L+V   +  + C  LRD     F  + DL
Sbjct: 1   MAEQASSFTDRLAARFAGAQIAVALPRGEVTLEVAAAEWHATCLALRD--ELGFEQLSDL 58

Query: 61  CGVDFLSR-----------------------------------------------SNRFD 73
           CGVD+L                                                   RF 
Sbjct: 59  CGVDYLGYGSDEWDTADVSSQGFSRGVEGKAVGRFAWGEFPSQESSAGAQPQQLPKQRFA 118

Query: 74  VVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADWFEREVWDMYGIFFEGHPDLR 131
           VV   +S ++N+RLRV+    + +     S+  I+PG +WFERE +D++GI F+GHPDLR
Sbjct: 119 VVAQLISYQHNQRLRVRCYAPDEQVPVVASVTDIWPGVNWFEREAFDLFGIVFDGHPDLR 178

Query: 132 RILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVE 171
           RILTDYGF GHP RKDFP+ G VE+ YDD+ K+VVY PV 
Sbjct: 179 RILTDYGFVGHPFRKDFPLIGNVEVRYDDERKRVVYEPVT 218


>gi|255019909|ref|ZP_05291984.1| NADH-ubiquinone oxidoreductase chain C [Acidithiobacillus caldus
           ATCC 51756]
 gi|254970689|gb|EET28176.1| NADH-ubiquinone oxidoreductase chain C [Acidithiobacillus caldus
           ATCC 51756]
          Length = 198

 Score =  170 bits (432), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 79/176 (44%), Positives = 105/176 (59%), Gaps = 7/176 (3%)

Query: 5   IEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD 64
           + D    ++      VR       EL+L+++   L+    FLRDDP C F  +IDLCGVD
Sbjct: 1   MNDTSQILLAELGQLVRHCRVDRAELTLELERDGLLESLRFLRDDPRCDFQQLIDLCGVD 60

Query: 65  FLSRS------NRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPS-IVGIYPGADWFEREVW 117
           +           RF VVYH LS  +++RLRV++ + E   +    V I+P A+WFERE +
Sbjct: 61  YAEYGDGSWSGPRFAVVYHLLSLNHHQRLRVRVYLDEELPIVPSAVEIWPAANWFEREAF 120

Query: 118 DMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELM 173
           D++G  FEGHPDLRRILTDYGF GHP RKDFP+ G VE+ YD   ++VVY P    
Sbjct: 121 DLFGFLFEGHPDLRRILTDYGFVGHPFRKDFPLVGTVEMRYDADQRRVVYEPTRTE 176


>gi|325921409|ref|ZP_08183266.1| NADH dehydrogenase subunit C [Xanthomonas gardneri ATCC 19865]
 gi|325548167|gb|EGD19164.1| NADH dehydrogenase subunit C [Xanthomonas gardneri ATCC 19865]
          Length = 250

 Score =  170 bits (432), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 77/220 (35%), Positives = 105/220 (47%), Gaps = 51/220 (23%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  +     D +   F+G+        GE++L+V   D  + C  LRD     F  + DL
Sbjct: 1   MAEQASSFTDRLAARFAGAQIAVALPRGEVTLEVAAADWHATCLVLRD--ELGFEQLSDL 58

Query: 61  CGVDFLSR-----------------------------------------------SNRFD 73
           CGVD L                                                   RF 
Sbjct: 59  CGVDHLGYGSDEWDTADVSSQGFSRGVEGKAVGRFAWGEFPSQESSDGAHPQHMPKQRFA 118

Query: 74  VVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADWFEREVWDMYGIFFEGHPDLR 131
           VV   +S ++N+RLRV+    + +     S+  I+PG +WFERE +D++GI F+GHPDLR
Sbjct: 119 VVAQLISYQHNQRLRVRCYAPDEQVPVVASLTDIWPGVNWFEREAFDLFGIVFDGHPDLR 178

Query: 132 RILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVE 171
           RILTDYGF GHP RKDFP+ G VE+ YD++ K+VVY PV 
Sbjct: 179 RILTDYGFVGHPFRKDFPLIGNVEVRYDEEKKRVVYEPVT 218


>gi|294669094|ref|ZP_06734180.1| NADH dehydrogenase, C subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309086|gb|EFE50329.1| NADH dehydrogenase, C subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 196

 Score =  170 bits (432), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 74/199 (37%), Positives = 108/199 (54%), Gaps = 18/199 (9%)

Query: 6   EDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDF 65
           +DL         G     + ++ E++++      + +   LRD     F  ++DLCGVD+
Sbjct: 4   KDLYSAAQRILDGKADKVLLALDEVTVECRPEYYLDIMQTLRDHEEMHFELLVDLCGVDY 63

Query: 66  LSRSNRFD------VVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADWFEREVW 117
            +  N         VV   LS K N+R+RV++           S++ IY  ADW+ERE +
Sbjct: 64  STYKNEAWPGQRFAVVSQLLSVKNNQRIRVRVWAENDDFPLVQSVINIYNSADWYEREAF 123

Query: 118 DMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHR 177
           DMYGI FE HPDLRRILTDYGF GHP RKDFP++G+VE+ YD+  K+V+Y+PV +     
Sbjct: 124 DMYGIVFENHPDLRRILTDYGFVGHPFRKDFPISGYVEMRYDETEKRVIYQPVTIE---- 179

Query: 178 DYDFLSPWEGVNSLFAKED 196
                 P E    +  +E+
Sbjct: 180 ------PREITPRVVREEN 192


>gi|289667378|ref|ZP_06488453.1| NADH dehydrogenase subunit C [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 250

 Score =  170 bits (431), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 78/220 (35%), Positives = 105/220 (47%), Gaps = 51/220 (23%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  +     D +   F+G+        GE++L+V   D    C  LRD     F  + DL
Sbjct: 1   MAEQASSFTDRLAARFAGAQIAVTLPRGEVTLEVAAADWHVTCLALRD--ELGFEQLSDL 58

Query: 61  CGVDFLSR-----------------------------------------------SNRFD 73
           CGVD+L                                                   RF 
Sbjct: 59  CGVDYLGYGSDEWDTADVSSQGFSRGVEGKAIGRFAWGEFPSQESSSGAQPQQLPKQRFA 118

Query: 74  VVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADWFEREVWDMYGIFFEGHPDLR 131
           VV   +S ++N+RLRV+    + +     S+  I+PG +WFERE +D++GI F+GHPDLR
Sbjct: 119 VVAQLISYQHNQRLRVRCYAPDKQVPVVASLTDIWPGVNWFEREAFDLFGIVFDGHPDLR 178

Query: 132 RILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVE 171
           RILTDYGF GHP RKDFP+ G VE+ YDD+ K+VVY PV 
Sbjct: 179 RILTDYGFVGHPFRKDFPLIGNVEVRYDDERKRVVYEPVT 218


>gi|225024123|ref|ZP_03713315.1| hypothetical protein EIKCOROL_00991 [Eikenella corrodens ATCC
           23834]
 gi|224943148|gb|EEG24357.1| hypothetical protein EIKCOROL_00991 [Eikenella corrodens ATCC
           23834]
          Length = 196

 Score =  170 bits (431), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 75/199 (37%), Positives = 108/199 (54%), Gaps = 18/199 (9%)

Query: 6   EDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDF 65
           +DL         G     + ++ E++++      + +   LRD     F  ++DLCGVD+
Sbjct: 4   KDLYSAAQRILEGKADKVLLALDEVTVECRPEYYLDIMQTLRDHEEMHFELLVDLCGVDY 63

Query: 66  ------LSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADWFEREVW 117
                      RF VV   LS K N+R+RV++           S++ IY  ADW+ERE +
Sbjct: 64  STYKDEPWLGKRFAVVSQLLSVKNNQRIRVRVWAENDDFPLVQSVINIYNSADWYEREAF 123

Query: 118 DMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHR 177
           DMYGI FE HPDLRRILTDYGF GHP RKDFP++G+VE+ YD+  K+V+Y+PV +     
Sbjct: 124 DMYGIVFENHPDLRRILTDYGFVGHPFRKDFPISGYVEMRYDETEKRVIYQPVTIE---- 179

Query: 178 DYDFLSPWEGVNSLFAKED 196
                 P E    +  +E+
Sbjct: 180 ------PREITPRVVREEN 192


>gi|153207289|ref|ZP_01946053.1| NADH dehydrogenase (ubiquinone), C subunit [Coxiella burnetii 'MSU
           Goat Q177']
 gi|165918788|ref|ZP_02218874.1| NADH dehydrogenase (ubiquinone), C subunit [Coxiella burnetii RSA
           334]
 gi|212218214|ref|YP_002305001.1| NADH-quinone oxidoreductase chain C [Coxiella burnetii CbuK_Q154]
 gi|120576777|gb|EAX33401.1| NADH dehydrogenase (ubiquinone), C subunit [Coxiella burnetii 'MSU
           Goat Q177']
 gi|165917512|gb|EDR36116.1| NADH dehydrogenase (ubiquinone), C subunit [Coxiella burnetii RSA
           334]
 gi|212012476|gb|ACJ19856.1| NADH-quinone oxidoreductase chain C [Coxiella burnetii CbuK_Q154]
          Length = 227

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 78/205 (38%), Positives = 110/205 (53%), Gaps = 33/205 (16%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  K + L D I + F+  +   V  V  +++++    L+ +C+ LRDDP   F  ++D+
Sbjct: 1   MSEK-QTLIDAINDRFNSQIEAVVAGVDMVTIELLPTHLLEVCTALRDDPPFNFELLLDV 59

Query: 61  CGVDF-------------------------------LSRSNRFDVVYHFLSPKYNRRLRV 89
           CGVD+                                    RF VVYH LS ++N R+R+
Sbjct: 60  CGVDYLEYGMSPWRTEETPNTGFSRGFEEVIQEQIIPWNKPRFAVVYHLLSLRHNHRIRL 119

Query: 90  KIAVAEGKSVPS-IVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDF 148
           K  V     +   ++ I+  ADW+ERE +D+YGI FEGHPDLRR+LTDYGF GHP RKDF
Sbjct: 120 KTYVEGDPPLVPSVIKIWSSADWYEREAFDLYGIVFEGHPDLRRLLTDYGFVGHPFRKDF 179

Query: 149 PVTGFVELHYDDKVKKVVYRPVELM 173
           P+ G VEL YD   ++ VY PV + 
Sbjct: 180 PLIGEVELRYDAAQQRCVYEPVSIQ 204


>gi|270158112|ref|ZP_06186769.1| NADH-quinone oxidoreductase C subunit [Legionella longbeachae
           D-4968]
 gi|289163623|ref|YP_003453761.1| NADH dehydrogenase I chain C [Legionella longbeachae NSW150]
 gi|269990137|gb|EEZ96391.1| NADH-quinone oxidoreductase C subunit [Legionella longbeachae
           D-4968]
 gi|288856796|emb|CBJ10607.1| NADH dehydrogenase I chain C [Legionella longbeachae NSW150]
          Length = 227

 Score =  170 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 79/204 (38%), Positives = 112/204 (54%), Gaps = 32/204 (15%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M +  + L + + +  +  V     +  E++++VD  +L ++   LRD    CF  +IDL
Sbjct: 1   MTKN-DYLVEQLKSELASYVDGVSVAHNEVTIEVDVSNLKAVMHELRDLESFCFDQLIDL 59

Query: 61  CGVDFLSRSNR------------------------------FDVVYHFLSPKYNRRLRVK 90
           C VD+L                                   F VVYH LS K N R+RVK
Sbjct: 60  CAVDYLLYGQYDWETDAATEKGFSRGVERQETKACTLDKPRFAVVYHLLSTKKNHRIRVK 119

Query: 91  IAVAEGKSVPS-IVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFP 149
           + V E   +   +  ++ GA+WFERE +D+YG+ FEGHPDLRRILTDYGF GHP RKDFP
Sbjct: 120 VFVDESHLIVPSVHDLWKGANWFEREAYDLYGVLFEGHPDLRRILTDYGFIGHPFRKDFP 179

Query: 150 VTGFVELHYDDKVKKVVYRPVELM 173
           ++G VE+ YD K +KV+Y PV++ 
Sbjct: 180 LSGHVEMRYDAKSEKVIYAPVDIE 203


>gi|165933065|ref|YP_001649854.1| NADH dehydrogenase subunit C [Rickettsia rickettsii str. Iowa]
 gi|165908152|gb|ABY72448.1| NADH-quinone oxidoreductase chain C [Rickettsia rickettsii str.
           Iowa]
          Length = 206

 Score =  170 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 73/196 (37%), Positives = 109/196 (55%), Gaps = 35/196 (17%)

Query: 41  SLCSFLRDDPHCCFVNIIDLCGVDFLSRS------------------------------- 69
                L++     F  + DL G DF   +                               
Sbjct: 2   PFLKALKESEELRFTLLTDLFGADFPQNNVVNSVGLGHKEQGAKPITNRRTTSDNVGESK 61

Query: 70  ----NRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFE 125
                RF+VVY+ LS K N+RL +K+ ++E +++PS + I+  A W+EREV+DMYG+ FE
Sbjct: 62  SIDYKRFEVVYNLLSLKLNKRLIIKVYISEQETIPSAMSIFSAACWYEREVYDMYGVNFE 121

Query: 126 GHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPW 185
           G+ D RRILTDY FEGHPLRKDFP+TG+ ++ YD+K+KKV Y PV+L  E+R++DF S W
Sbjct: 122 GNDDKRRILTDYEFEGHPLRKDFPLTGYTQVKYDEKLKKVAYEPVDLDIEYREFDFSSHW 181

Query: 186 EGVNSLFAKEDSKDDM 201
              + +   ++   ++
Sbjct: 182 HSPSYVLPGDEKATNV 197


>gi|308311749|gb|ADO27643.1| nad9 [Rhizanthella gardneri]
          Length = 190

 Score =  170 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 75/155 (48%), Positives = 99/155 (63%)

Query: 33  DVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIA 92
           + D      L  FL+   +      ID+CGVD  SR  RF VV++ LS +YN R+RV+ +
Sbjct: 32  ETDTDYPFPLLCFLKLHTYTRVQVSIDICGVDHPSRKRRFSVVHNLLSTRYNSRIRVQTS 91

Query: 93  VAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTG 152
             E   +  +V  +P A  +EREVWDM G+    HPDLRRI TD+GFEGHPLRKDFP++G
Sbjct: 92  ADEVTRISPVVSPFPSAGRWEREVWDMSGVSSINHPDLRRISTDHGFEGHPLRKDFPLSG 151

Query: 153 FVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           +VE+ YDD  K+VV  P+E+ QE R +D  SPWE 
Sbjct: 152 YVEVRYDDPEKRVVSEPIEMTQEFRYFDSASPWEQ 186


>gi|326910754|gb|AEA11195.1| NADH dehydrogenase subunit 9 [Selaginella moellendorffii]
 gi|327176863|gb|AEA29870.1| NADH dehydrogenase subunit 9 [Selaginella moellendorffii]
          Length = 205

 Score =  170 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 68/184 (36%), Positives = 102/184 (55%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +        ++       +        +L L      L  +  FL+      F  ++ L 
Sbjct: 1   METTYPFVTFLTAILPHWIHGWDRPRRDLLLHPYPDHLFQVLWFLKYHSIARFSVLMHLA 60

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
           GVD+ SR+ R  +VY  LS   N R+R++    E   + S+  ++P ADW+EREVWDM+G
Sbjct: 61  GVDYPSRAQRVALVYTLLSVSLNTRIRLRTTYDELTPICSVSSLFPTADWWEREVWDMFG 120

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           + F  HPD RRILTDYGF+ HPLRK+FP++G+V + YDD   ++V  P+E+ QE+R +D 
Sbjct: 121 VHFSHHPDCRRILTDYGFDWHPLRKEFPLSGYVHVRYDDSDGRIVTAPIEMNQEYRYFDL 180

Query: 182 LSPW 185
             PW
Sbjct: 181 ACPW 184


>gi|254468244|ref|ZP_05081650.1| NADH dehydrogenase i chain c [beta proteobacterium KB13]
 gi|207087054|gb|EDZ64337.1| NADH dehydrogenase i chain c [beta proteobacterium KB13]
          Length = 195

 Score =  170 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 68/180 (37%), Positives = 104/180 (57%), Gaps = 10/180 (5%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +  +  L   + ++F  +V        E +L +   +++     L+      F+ +ID+ 
Sbjct: 1   MSDLNKLISNLKSTFPQAVVNKQ--FDEATLSIYGNEIIKTLKKLKTGSQFKFLQLIDIA 58

Query: 62  GVDF------LSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGK--SVPSIVGIYPGADWFE 113
            VD+      L  +NR+ VVYH LS K N+RLRV+  V +     + +   +Y  ADW+E
Sbjct: 59  AVDYSQYPQKLFDNNRYAVVYHLLSIKNNQRLRVRAFVEDNNFPVIETATTVYANADWYE 118

Query: 114 REVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELM 173
           RE +D++G+ F  HPDLRRILTDYGF GHP RKDFP+ G VE+ YD + K+V+Y+PV + 
Sbjct: 119 REAFDLFGVMFLNHPDLRRILTDYGFIGHPFRKDFPMIGNVEMRYDPEQKRVIYQPVTIE 178


>gi|157964435|ref|YP_001499259.1| NADH dehydrogenase subunit C [Rickettsia massiliae MTU5]
 gi|157844211|gb|ABV84712.1| NADH dehydrogenase I chain C [Rickettsia massiliae MTU5]
          Length = 242

 Score =  170 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 78/233 (33%), Positives = 122/233 (52%), Gaps = 36/233 (15%)

Query: 4   KIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGV 63
            ++ L + +    S  +         L+  ++   L+     L++     F  + DL G 
Sbjct: 2   TLDKLIERLAAKSSILITPITVK-DYLAYKIEPNFLLLFLKALKESEELRFTLLTDLFGA 60

Query: 64  DFLSRS-----------------------------------NRFDVVYHFLSPKYNRRLR 88
           DF   +                                    RF+VVY+ LS K N+RL 
Sbjct: 61  DFPQNNVVNSVGLGYKEQGAKPITNRRATSDNVGESKSIDYKRFEVVYNLLSLKLNKRLI 120

Query: 89  VKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDF 148
           +K+ ++E +++PS + I+  A W+EREV+DMYG+ FEG+ D RRILTDY FEGHPLRKDF
Sbjct: 121 IKVYISEKETIPSAMNIFSAACWYEREVYDMYGVNFEGNDDKRRILTDYEFEGHPLRKDF 180

Query: 149 PVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEGVNSLFAKEDSKDDM 201
           P+TG+ ++ YD+K+KKV Y PV+L  E+R++DF S W   + +   ++   D+
Sbjct: 181 PLTGYTQVKYDEKLKKVAYEPVDLDIEYREFDFSSHWHSPSYVLPGDEKATDV 233


>gi|161829956|ref|YP_001597291.1| NADH dehydrogenase (ubiquinone), C subunit [Coxiella burnetii RSA
           331]
 gi|218534266|sp|A9N8X1|NUOC_COXBR RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|161761823|gb|ABX77465.1| NADH dehydrogenase (ubiquinone), C subunit [Coxiella burnetii RSA
           331]
          Length = 227

 Score =  170 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 78/205 (38%), Positives = 110/205 (53%), Gaps = 33/205 (16%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  K + L D I + F+  +   V  V  +++++    L+ +C+ LRDDP   F  ++D+
Sbjct: 1   MAEK-QTLIDAINDRFNSQIEAVVAGVDMVTIELLPTHLLEVCTTLRDDPPFNFELLLDV 59

Query: 61  CGVDF-------------------------------LSRSNRFDVVYHFLSPKYNRRLRV 89
           CGVD+                                    RF VVYH LS ++N R+R+
Sbjct: 60  CGVDYLEYGMSPWRTEETPNTGFSRGFEEVIQEQIIPWNKPRFAVVYHLLSLRHNHRIRL 119

Query: 90  KIAVAEGKSVPS-IVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDF 148
           K  V     +   ++ I+  ADW+ERE +D+YGI FEGHPDLRR+LTDYGF GHP RKDF
Sbjct: 120 KTYVEGDPPLVPSVIKIWSSADWYEREAFDLYGIVFEGHPDLRRLLTDYGFVGHPFRKDF 179

Query: 149 PVTGFVELHYDDKVKKVVYRPVELM 173
           P+ G VEL YD   ++ VY PV + 
Sbjct: 180 PLIGEVELRYDAAQQRCVYEPVSIQ 204


>gi|60117113|ref|YP_209576.1| NADH dehydrogenase subunit 9 [Polysphondylium pallidum]
 gi|51339677|gb|AAU00591.1| NADH dehydrogenase subunit 9 [Polysphondylium pallidum]
          Length = 207

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 65/182 (35%), Positives = 110/182 (60%), Gaps = 4/182 (2%)

Query: 8   LGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLS 67
           +G  ++    G ++  + +   +S+ V+  +L ++ S L+ +       ++D+  VD L+
Sbjct: 12  IGTMLLKLVPGLIQKIIYNPENISVIVNSKNLNNILSILKLNTIMQCKMLLDIVCVDCLN 71

Query: 68  RSNR----FDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIF 123
                   F ++Y   S   N R+ V + +   +++ S   ++  A W ERE+WDMYG++
Sbjct: 72  IEENKLGRFKLIYVLNSVFNNNRIHVIVYLKNNETIESCSSLFSSAVWLEREIWDMYGVY 131

Query: 124 FEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLS 183
           F  HPDLRRILTDYGF  +PL+KDFP+TG++E++YD   KK++Y+P+ELMQE R Y++  
Sbjct: 132 FANHPDLRRILTDYGFSWYPLKKDFPLTGYIEVYYDINDKKIIYKPIELMQEFRMYEYGI 191

Query: 184 PW 185
            W
Sbjct: 192 SW 193


>gi|29654737|ref|NP_820429.1| NADH dehydrogenase (ubiquinone), C subunit [Coxiella burnetii RSA
           493]
 gi|154705940|ref|YP_001423958.1| NADH-quinone oxidoreductase chain C [Coxiella burnetii Dugway
           5J108-111]
 gi|81722521|sp|Q83BQ7|NUOC_COXBU RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|218534276|sp|A9KBK6|NUOC_COXBN RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|29542005|gb|AAO90943.1| NADH-quinone oxidoreductase chain C [Coxiella burnetii RSA 493]
 gi|154355226|gb|ABS76688.1| NADH-quinone oxidoreductase chain C [Coxiella burnetii Dugway
           5J108-111]
          Length = 227

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 78/205 (38%), Positives = 110/205 (53%), Gaps = 33/205 (16%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  K + L D I + F+  +   V  V  +++++    L+ +C+ LRDDP   F  ++D+
Sbjct: 1   MAEK-QTLIDAINDRFNSQIEAVVAGVDMVTIELLPTHLLEVCTALRDDPPFNFELLLDV 59

Query: 61  CGVDF-------------------------------LSRSNRFDVVYHFLSPKYNRRLRV 89
           CGVD+                                    RF VVYH LS ++N R+R+
Sbjct: 60  CGVDYLEYGMSPWRTEETPNTGFSRGFEEVIQEQIIPWNKPRFAVVYHLLSLRHNHRIRL 119

Query: 90  KIAVAEGKSVPS-IVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDF 148
           K  V     +   ++ I+  ADW+ERE +D+YGI FEGHPDLRR+LTDYGF GHP RKDF
Sbjct: 120 KTYVEGDPPLVPSVIKIWSSADWYEREAFDLYGIVFEGHPDLRRLLTDYGFVGHPFRKDF 179

Query: 149 PVTGFVELHYDDKVKKVVYRPVELM 173
           P+ G VEL YD   ++ VY PV + 
Sbjct: 180 PLIGEVELRYDAAQQRCVYEPVSIQ 204


>gi|56791598|gb|AAW30337.1| NADH dehydrogenase subunit 9 [Piper betle]
          Length = 180

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 76/153 (49%), Positives = 101/153 (66%)

Query: 33  DVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIA 92
           D +   L  L  FL+   +      ID+CGVD  SR  RF+VV++ LS +YN R+RV+ +
Sbjct: 28  DTNTDYLFPLLCFLKFHTYTRVQVSIDICGVDHPSRKLRFEVVHNLLSTRYNSRIRVQTS 87

Query: 93  VAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTG 152
             E   +  +V ++P A W+EREVWDM G+    HPDLRRI TDYGFEGHPLRKD P++G
Sbjct: 88  ADEVTRISPVVSLFPSAGWWEREVWDMSGVSSINHPDLRRISTDYGFEGHPLRKDLPLSG 147

Query: 153 FVELHYDDKVKKVVYRPVELMQEHRDYDFLSPW 185
           +VE+ YDD  K+VV  P+E+ QE R +D  SPW
Sbjct: 148 YVEVRYDDPEKRVVSEPIEMTQEFRYFDSASPW 180


>gi|225465147|ref|XP_002277597.1| PREDICTED: similar to nad9 [Vitis vinifera]
          Length = 229

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 75/148 (50%), Positives = 98/148 (66%)

Query: 40  VSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV 99
             L  FL+   +      ID+CGVD  SR  RF+VVY+ LS +YN R+RV+ +  E   +
Sbjct: 78  FQLLCFLKLHTYTRVQVSIDICGVDHPSRKRRFEVVYNLLSTRYNSRIRVQTSADEVTRI 137

Query: 100 PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYD 159
             +V  +P A  +EREVWDM+G+    HPDLRRI TDYGFEGHPLRKD P++G+VE+ YD
Sbjct: 138 SPVVSPFPSAGRWEREVWDMFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYD 197

Query: 160 DKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           D  K+VV  P+E+ QE R +D  SPWE 
Sbjct: 198 DPEKRVVSEPIEMTQEFRYFDSASPWEQ 225


>gi|289665175|ref|ZP_06486756.1| NADH dehydrogenase subunit C [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 250

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 78/220 (35%), Positives = 106/220 (48%), Gaps = 51/220 (23%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M ++     D +   F+G+        GE++L+V   D    C  LRD     F  + DL
Sbjct: 1   MAKQASSFTDRLAARFAGAQIAVALPRGEVTLEVAAADWHVTCLALRD--ELGFEQLSDL 58

Query: 61  CGVDFLSR-----------------------------------------------SNRFD 73
           CGVD+L                                                   RF 
Sbjct: 59  CGVDYLGYGSDEWDTADVSSQGFSRGVEGKAIGRFAWGEFPSQESSSGAQPQQLPKQRFA 118

Query: 74  VVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADWFEREVWDMYGIFFEGHPDLR 131
           VV   +S ++N+RLRV+    + +     S+  I+PG +WFERE +D++GI F+GHPDLR
Sbjct: 119 VVAQLISYQHNQRLRVRCYAPDEQVPVVASLTDIWPGVNWFEREAFDLFGIVFDGHPDLR 178

Query: 132 RILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVE 171
           RILTDYGF GHP RKDFP+ G VE+ YDD+ K+VVY PV 
Sbjct: 179 RILTDYGFVGHPFRKDFPLIGNVEVRYDDERKRVVYEPVT 218


>gi|212212184|ref|YP_002303120.1| NADH-quinone oxidoreductase chain C [Coxiella burnetii CbuG_Q212]
 gi|212010594|gb|ACJ17975.1| NADH-quinone oxidoreductase chain C [Coxiella burnetii CbuG_Q212]
          Length = 227

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 79/205 (38%), Positives = 110/205 (53%), Gaps = 33/205 (16%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  K + L D I + F+  +   V  V  +++++    L+ +C+ LRDDP   F  ++D+
Sbjct: 1   MAEK-QTLIDAINDRFNSQIEAVVAGVDMVTIELLPTHLLEVCTALRDDPPFNFELLLDV 59

Query: 61  CGVDF-------------------------------LSRSNRFDVVYHFLSPKYNRRLRV 89
           CGVD+                                    RF VVYH LS +YN R+R+
Sbjct: 60  CGVDYLEYGMSPWRTEETPNTGFSRGFEEVIQEQIIPWNKPRFAVVYHLLSLRYNHRIRL 119

Query: 90  KIAVAEGKSVPS-IVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDF 148
           K  V     +   ++ I+  ADW+ERE +D+YGI FEGHPDLRR+LTDYGF GHP RKDF
Sbjct: 120 KTYVEGDPPLVPSVIKIWSSADWYEREAFDLYGIVFEGHPDLRRLLTDYGFVGHPFRKDF 179

Query: 149 PVTGFVELHYDDKVKKVVYRPVELM 173
           P+ G VEL YD   ++ VY PV + 
Sbjct: 180 PLIGEVELRYDAAQQRCVYEPVSIQ 204


>gi|224365639|ref|YP_002608366.1| NADH dehydrogenase subunit 9 [Vitis vinifera]
 gi|209954163|emb|CAQ77607.1| NADH dehydrogenase subunit 9 [Vitis vinifera]
 gi|239764763|gb|ACS15232.1| NADH dehydrogenase subunit 9 [Vitis vinifera]
          Length = 190

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 75/148 (50%), Positives = 98/148 (66%)

Query: 40  VSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV 99
             L  FL+   +      ID+CGVD  SR  RF+VVY+ LS +YN R+RV+ +  E   +
Sbjct: 39  FQLLCFLKLHTYTRVQVSIDICGVDHPSRKRRFEVVYNLLSTRYNSRIRVQTSADEVTRI 98

Query: 100 PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYD 159
             +V  +P A  +EREVWDM+G+    HPDLRRI TDYGFEGHPLRKD P++G+VE+ YD
Sbjct: 99  SPVVSPFPSAGRWEREVWDMFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYD 158

Query: 160 DKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           D  K+VV  P+E+ QE R +D  SPWE 
Sbjct: 159 DPEKRVVSEPIEMTQEFRYFDSASPWEQ 186


>gi|92084858|emb|CAI83762.1| NADH dehydrogenase subunit 9 [Helianthus annuus]
          Length = 190

 Score =  168 bits (425), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 75/148 (50%), Positives = 98/148 (66%)

Query: 40  VSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV 99
             L  FL+   +      ID+CGVD  SR  RF+VVY+ LS +YN R+RV+ +  E   +
Sbjct: 39  FQLLCFLQLHTYTRVQVSIDICGVDHPSRKRRFEVVYNLLSTRYNSRIRVQTSADEVTRI 98

Query: 100 PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYD 159
             +V  +P A  +EREVWDM+G+    HPDLRRI TDYGFEGHPLRKD P++G+VE+ YD
Sbjct: 99  SPVVSPFPSAGRWEREVWDMFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYD 158

Query: 160 DKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           D  K+VV  P+E+ QE R +D  SPWE 
Sbjct: 159 DPEKRVVSEPIEMTQEFRYFDSASPWEQ 186


>gi|15836910|ref|NP_297598.1| NADH dehydrogenase subunit C [Xylella fastidiosa 9a5c]
 gi|81788889|sp|Q9PGJ3|NUOC_XYLFA RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|9105130|gb|AAF83118.1|AE003884_3 NADH-ubiquinone oxidoreductase, NQO5 subunit [Xylella fastidiosa
           9a5c]
          Length = 250

 Score =  168 bits (425), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 78/220 (35%), Positives = 106/220 (48%), Gaps = 51/220 (23%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  +     D + + F           GE++LDV   +  ++C  LRD     F  + DL
Sbjct: 1   MAEQTLSFVDCLTSRFPTVRVSVAQPRGEITLDVPAVEWCAVCRALRD--EFDFEQLSDL 58

Query: 61  CGVDFLSRSNRFD----------------------------------------------- 73
           CGVD+L   N                                                  
Sbjct: 59  CGVDYLGYGNTEWDTTDVSAQGFSRGVAGKAVGRFAWGEFPSAGSNDGTQPWDVPQERFA 118

Query: 74  VVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLR 131
           V+ H +S ++NRRLRV+   +      V S+  ++PG +WFERE +D++GI FEGHPDLR
Sbjct: 119 VLAHLISYRHNRRLRVRCFASNDALPIVASLTDVWPGVNWFEREAFDLFGIVFEGHPDLR 178

Query: 132 RILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVE 171
           RILTDYGF GHP RKDFP+TG VE+ YD++ K+VVY PV 
Sbjct: 179 RILTDYGFIGHPFRKDFPLTGNVEVRYDEEKKRVVYVPVT 218


>gi|166895614|ref|YP_001661408.1| NADH dehydrogenase subunit 9 [Cycas taitungensis]
 gi|166706946|dbj|BAF98410.1| NADH dehydrogenase subunit 9 [Cycas taitungensis]
          Length = 197

 Score =  167 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 78/199 (39%), Positives = 114/199 (57%), Gaps = 3/199 (1%)

Query: 1   MVRKIEDLGDYIVNSFSGS-VRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIID 59
           M  ++  +  Y+ ++     V     S  E     +      L  F +   +      ID
Sbjct: 1   MDNQL--IPKYLRDTSPSKWVHKMERSEHENRSYTNTDYPFQLLWFPKSHTYTRSQVSID 58

Query: 60  LCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDM 119
           + GVD+ SR  RF+VV++  S +YN R+RV+ +V E   +  +V  +P A  +EREVWDM
Sbjct: 59  IRGVDYPSRKRRFEVVHNSPSTRYNPRIRVRTSVDEITRISPVVSPFPSAGRWEREVWDM 118

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDY 179
            G++   HPDLRRILTDYGFEGHPLRKDFP++G+VE+ YDD  K+ V  P+ + QE R +
Sbjct: 119 SGVYSINHPDLRRILTDYGFEGHPLRKDFPLSGYVEVRYDDSEKRAVSEPIGMTQEFRYF 178

Query: 180 DFLSPWEGVNSLFAKEDSK 198
           DF SPWE +      ++ +
Sbjct: 179 DFASPWEQMARSDGSDNEE 197


>gi|254491841|ref|ZP_05105020.1| putative NADH dehydrogenase, subunit C subfamily [Methylophaga
           thiooxidans DMS010]
 gi|224463319|gb|EEF79589.1| putative NADH dehydrogenase, subunit C subfamily [Methylophaga
           thiooxydans DMS010]
          Length = 219

 Score =  167 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 71/204 (34%), Positives = 104/204 (50%), Gaps = 36/204 (17%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M++ ++     +   F+  +    +   E+++ V    +V++C  LRD     F  ++DL
Sbjct: 1   MMQALK---AKLEQDFADELLDCDSDRDEITMHVAAEQIVAVCQRLRD--QYDFEQLLDL 55

Query: 61  CGVDFLSRSNRFD------------------------------VVYHFLSPKYNRRLRVK 90
           CGVD+                                      VVYH LS K+N+RLR+K
Sbjct: 56  CGVDYSEYGGSAWETKQSSEFGFSRAVDGMGHAEPVQDGLRFAVVYHLLSIKHNQRLRLK 115

Query: 91  IAVAEGKSVPS-IVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFP 149
           + +     V   +  ++  A+WFERE +D++GI F GH DLRRILTDYGF GHP RKDFP
Sbjct: 116 VRLEADSPVVDSVTSVWNSAEWFEREAFDLFGILFNGHNDLRRILTDYGFVGHPFRKDFP 175

Query: 150 VTGFVELHYDDKVKKVVYRPVELM 173
           + G VE+ YD   K+VVY PV + 
Sbjct: 176 LIGNVEMRYDPDKKRVVYEPVSIE 199


>gi|56791588|gb|AAW30332.1| NADH dehydrogenase subunit 9 [Eichhornia crassipes]
          Length = 179

 Score =  166 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 74/152 (48%), Positives = 98/152 (64%)

Query: 33  DVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIA 92
             +   L  L  FL+   +      ID+CGVD  SR  RF+VV++ LS +YN R+RV+ +
Sbjct: 28  YTNTDYLFQLLCFLKLHTYTRVQVSIDICGVDHPSRKRRFEVVHNLLSIRYNSRIRVQTS 87

Query: 93  VAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTG 152
             E   +  +V  +P A  +EREVWDM G+    HPDLRRI TDYGFEGHPLRKDFP++G
Sbjct: 88  ADEVTRISPVVSPFPSAGRWEREVWDMSGVSSINHPDLRRISTDYGFEGHPLRKDFPLSG 147

Query: 153 FVELHYDDKVKKVVYRPVELMQEHRDYDFLSP 184
           +VE+ YDD  K+VV  P+E+ QE R +D  SP
Sbjct: 148 YVEVRYDDPEKRVVSEPIEMTQEFRYFDSASP 179


>gi|308311747|gb|ADO27642.1| nad9 [Rhizanthella gardneri]
          Length = 190

 Score =  165 bits (419), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 74/155 (47%), Positives = 98/155 (63%)

Query: 33  DVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIA 92
           + D      L  FL+   +      ID+CGVD  SR  RF VV++ LS +YN R+RV+ +
Sbjct: 32  ETDTDYPFPLLCFLKLHTYTRVQVSIDICGVDHPSRKRRFSVVHNLLSTRYNSRIRVQTS 91

Query: 93  VAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTG 152
             E   +  +V  +P A  +EREVWDM G+    HPDLRRI TD+GFEGH LRKDFP++G
Sbjct: 92  ADEVTRISPVVSPFPSAGRWEREVWDMSGVSSINHPDLRRISTDHGFEGHSLRKDFPLSG 151

Query: 153 FVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           +VE+ YDD  K+VV  P+E+ QE R +D  SPWE 
Sbjct: 152 YVEVRYDDPEKRVVSEPIEMTQEFRYFDSASPWEQ 186


>gi|56791594|gb|AAW30335.1| NADH dehydrogenase subunit 9 [Berberis bealei]
          Length = 179

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 73/145 (50%), Positives = 96/145 (66%)

Query: 40  VSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV 99
             L  FL+   +      ID+CGVD  SR  RF+VVY+ LS +YN R+RV+    E   +
Sbjct: 35  FPLLCFLKLHTYTRVQVSIDICGVDHPSRKRRFEVVYNLLSTRYNSRIRVQTCADEVTRI 94

Query: 100 PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYD 159
             +V  +P A W+EREVWDM+G+    HPDLRRI TD+GFEGHPLRKD P++G+VE+ YD
Sbjct: 95  SPVVSPFPSAGWWEREVWDMFGVSSINHPDLRRISTDHGFEGHPLRKDLPLSGYVEVRYD 154

Query: 160 DKVKKVVYRPVELMQEHRDYDFLSP 184
           D  K+VV  P+E+ QE R +D  SP
Sbjct: 155 DPEKRVVSEPIEMTQEFRYFDSASP 179


>gi|121998542|ref|YP_001003329.1| NADH (or F420H2) dehydrogenase subunit C [Halorhodospira halophila
           SL1]
 gi|218534291|sp|A1WXW5|NUOC_HALHL RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|121589947|gb|ABM62527.1| NADH dehydrogenase subunit C [Halorhodospira halophila SL1]
          Length = 246

 Score =  164 bits (416), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 75/216 (34%), Positives = 103/216 (47%), Gaps = 44/216 (20%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           + + E L + +   F G +       GE++ DV   DL+++ + LRD     F  + D+ 
Sbjct: 1   MAEPESLLEQLRGHFGGRLTDCWLERGEVTADVRPADLLAVMTELRDGAEWRFEQLSDVA 60

Query: 62  GVDFLSRSNRFDVV------------------------------------------YHFL 79
           GVD+ +      +                                           Y  L
Sbjct: 61  GVDYAAYGQDEWITESATGTGFSRGVTEPGFGRLGLTGIYGVQSIEEQTGRRFAAVYQLL 120

Query: 80  SPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDY 137
           S  +N RLRV+    +      PS+ GI+P A+W ERE +D+YGI FEGHPDLRRILTDY
Sbjct: 121 SLTHNHRLRVRCFAEDDDLPVLPSVTGIWPCANWAEREAFDLYGIVFEGHPDLRRILTDY 180

Query: 138 GFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELM 173
           GF GHP RKDFP+ G VE  YD +  +VVY PVE+ 
Sbjct: 181 GFVGHPFRKDFPLIGNVEPRYDPEKGRVVYGPVEIE 216


>gi|28198173|ref|NP_778487.1| NADH dehydrogenase subunit C [Xylella fastidiosa Temecula1]
 gi|81725066|sp|Q87EQ3|NUOC_XYLFT RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|218534353|sp|B2I786|NUOC_XYLF2 RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|28056243|gb|AAO28136.1| NADH-ubiquinone oxidoreductase NQO5 subunit [Xylella fastidiosa
           Temecula1]
          Length = 250

 Score =  164 bits (416), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 79/220 (35%), Positives = 107/220 (48%), Gaps = 51/220 (23%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  +     D +++ F           GE+SLDV   +  ++C  LRD     F  + DL
Sbjct: 1   MAEQTLSFVDCLMSRFPTVRVSVAQPRGEISLDVPVVEWCAVCKALRD--EFDFEQLSDL 58

Query: 61  CGVDFLSRSNRFD----------------------------------------------- 73
           CGVD+L   N                                                  
Sbjct: 59  CGVDYLGYGNAEWDTTDVSAQGFSRGVAGKAVGRFAWGEFPSAGSNDGTQPWDVPQERFA 118

Query: 74  VVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLR 131
           V+ H +S ++NRRLRV+   +      V S+  ++PG +WFERE +D++GI FEGHPDLR
Sbjct: 119 VLAHLISYRHNRRLRVRCFASNDALPIVASLTDVWPGVNWFEREAFDLFGIVFEGHPDLR 178

Query: 132 RILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVE 171
           RILTDYGF GHP RKDFP+TG VE+ YD++ K+VVY PV 
Sbjct: 179 RILTDYGFIGHPFRKDFPLTGNVEVRYDEEKKRVVYVPVT 218


>gi|54298770|ref|YP_125139.1| NADH dehydrogenase I chain C [Legionella pneumophila str. Paris]
 gi|81822494|sp|Q5X1A9|NUOC_LEGPA RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|53752555|emb|CAH13987.1| NADH dehydrogenase I chain C [Legionella pneumophila str. Paris]
          Length = 227

 Score =  164 bits (414), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 79/203 (38%), Positives = 113/203 (55%), Gaps = 32/203 (15%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M +  E L + +  + +  +    ++ GE++++ +  +L+ +   LRD     F  +IDL
Sbjct: 1   MTKN-EYLIEKLQANLANHITELTSAYGEVTIECEVHNLLPVMIELRDREEFSFDQLIDL 59

Query: 61  CGVDFLSR------------------------------SNRFDVVYHFLSPKYNRRLRVK 90
           CGVD+L                                  RF VVYH LS K N RLRVK
Sbjct: 60  CGVDYLHYGDYDWETESATEHGFSRGVERQEAKAYAVNKPRFAVVYHLLSTKKNHRLRVK 119

Query: 91  IAVAEGKSVPSIVGI-YPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFP 149
           + V E   +   V   +  A+WFERE +D+YGI F+GHPDLRR+LTDYGF GHP RKDFP
Sbjct: 120 LFVEESHLIVPSVHHLWKSANWFEREAYDLYGILFDGHPDLRRLLTDYGFIGHPFRKDFP 179

Query: 150 VTGFVELHYDDKVKKVVYRPVEL 172
           ++G VE+ YD K++KV+Y PV++
Sbjct: 180 LSGEVEMRYDAKLQKVIYAPVDI 202


>gi|52842985|ref|YP_096784.1| NADH dehydrogenase I, C subunit [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|81376642|sp|Q5ZRU0|NUOC_LEGPH RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|52630096|gb|AAU28837.1| NADH dehydrogenase I, C subunit [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 227

 Score =  164 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 79/203 (38%), Positives = 112/203 (55%), Gaps = 32/203 (15%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M +  E L + +    +  +    ++ GE++++ +  +L+ +   LRD     F  +IDL
Sbjct: 1   MTKN-EYLIEKLQADLANHITELTSAYGEVTIECEVQNLLPVMIELRDREEFSFDQLIDL 59

Query: 61  CGVDFLSR------------------------------SNRFDVVYHFLSPKYNRRLRVK 90
           CGVD+L                                  RF VVYH LS K N RLRVK
Sbjct: 60  CGVDYLHYGDYDWETESATEHGFSRGVERQEAKAYAVNKPRFAVVYHLLSTKKNHRLRVK 119

Query: 91  IAVAEGKSVPSIVGI-YPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFP 149
           + V E   +   V   +  A+WFERE +D+YGI F+GHPDLRR+LTDYGF GHP RKDFP
Sbjct: 120 LFVEESHLIVPSVHHLWKSANWFEREAYDLYGILFDGHPDLRRLLTDYGFIGHPFRKDFP 179

Query: 150 VTGFVELHYDDKVKKVVYRPVEL 172
           ++G VE+ YD K++KV+Y PV++
Sbjct: 180 LSGEVEMRYDAKLQKVIYAPVDI 202


>gi|319787441|ref|YP_004146916.1| NADH (or F420H2) dehydrogenase, subunit C [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317465953|gb|ADV27685.1| NADH (or F420H2) dehydrogenase, subunit C [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 250

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 78/220 (35%), Positives = 106/220 (48%), Gaps = 51/220 (23%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M          + + F G+        GE++L+V  GDL++ C  LRD     F  +IDL
Sbjct: 1   MAEPAATFAQRLRDRFPGATVIVAEPRGEVTLEVSAGDLLATCFALRD--ELGFEQLIDL 58

Query: 61  CGVDFLSRSNRFD----------------------------------------------- 73
           CG+D++   +                                                  
Sbjct: 59  CGIDYMGYGSDEWDTDDVSSSGFSRGVEGKGPGRFGWGEKPSEQGEAGIEPVLVPERRFA 118

Query: 74  VVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADWFEREVWDMYGIFFEGHPDLR 131
            V H LS   N+RLRV+   A+      PS+  ++ GA+WFERE +D+YGI FEGHPDLR
Sbjct: 119 AVTHLLSCANNQRLRVRCYAADDTLPVVPSLTRVWRGANWFEREAFDLYGIIFEGHPDLR 178

Query: 132 RILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVE 171
           RI+TDYGF GHP RKDFP+ G VE+ YD++ K+VVY PV 
Sbjct: 179 RIMTDYGFVGHPFRKDFPLIGNVEVRYDEERKRVVYEPVT 218


>gi|148361100|ref|YP_001252307.1| NADH dehydrogenase I subunit C [Legionella pneumophila str. Corby]
 gi|296108430|ref|YP_003620131.1| NADH dehydrogenase I chain C [Legionella pneumophila 2300/99 Alcoy]
 gi|218534316|sp|A5IHW1|NUOC_LEGPC RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|148282873|gb|ABQ56961.1| NADH dehydrogenase I, C subunit [Legionella pneumophila str. Corby]
 gi|295650332|gb|ADG26179.1| NADH dehydrogenase I chain C [Legionella pneumophila 2300/99 Alcoy]
          Length = 227

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 78/203 (38%), Positives = 112/203 (55%), Gaps = 32/203 (15%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M +  E L + +    +  +    ++ GE++++ +  +L+ +   LRD     F  +IDL
Sbjct: 1   MTKN-EYLIEKLQADLANHITELTSAYGEVTIECEVQNLLPVMIELRDREEFSFDQLIDL 59

Query: 61  CGVDFLSR------------------------------SNRFDVVYHFLSPKYNRRLRVK 90
           CGVD+L                                  RF VVYH LS + N RLRVK
Sbjct: 60  CGVDYLHYGDYDWETESATEHGFSRGVERQEAKAYAVNKPRFAVVYHLLSTQKNHRLRVK 119

Query: 91  IAVAEGKSVPSIVGI-YPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFP 149
           + V E   +   V   +  A+WFERE +D+YGI F+GHPDLRR+LTDYGF GHP RKDFP
Sbjct: 120 LFVEESHLIVPSVHHLWKSANWFEREAYDLYGILFDGHPDLRRLLTDYGFIGHPFRKDFP 179

Query: 150 VTGFVELHYDDKVKKVVYRPVEL 172
           ++G VE+ YD K++KV+Y PV++
Sbjct: 180 LSGEVEMRYDAKLQKVIYAPVDI 202


>gi|328775177|gb|AEB39983.1| NADH dehydrogenase subunit 9 [Funaria hygrometrica]
          Length = 116

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 65/106 (61%), Positives = 83/106 (78%)

Query: 82  KYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEG 141
           +YN R+RV+ +V E   + S V I+P A W+EREVWDM+G++F  HPDLRRILTDYGFEG
Sbjct: 1   QYNSRIRVQTSVDEITPICSAVSIFPSAGWWEREVWDMFGVYFSNHPDLRRILTDYGFEG 60

Query: 142 HPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           HPLRKDFP++G+VE+ YDD  K+VV  P+E+ QE R +DF SPWE 
Sbjct: 61  HPLRKDFPLSGYVEVRYDDSEKRVVSEPIEMTQEFRYFDFASPWEQ 106


>gi|56791602|gb|AAW30339.1| NADH dehydrogenase subunit 9 [Eschscholzia californica]
          Length = 165

 Score =  162 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 71/145 (48%), Positives = 96/145 (66%)

Query: 40  VSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV 99
             L  FL+   +      ID+CGVD  SR  RF+VV++ LS +YN R+RV+ +  E   +
Sbjct: 21  FQLLCFLKLHTYTRVQVSIDICGVDHPSRKRRFEVVHNLLSTRYNSRIRVQTSADEVTRI 80

Query: 100 PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYD 159
             +V  +P A  +EREVWDM+G+    HPDLRRI TD+GFEGHPLRKD P++G+VE+ YD
Sbjct: 81  SPVVSPFPSAGRWEREVWDMFGVSSINHPDLRRISTDHGFEGHPLRKDLPLSGYVEVRYD 140

Query: 160 DKVKKVVYRPVELMQEHRDYDFLSP 184
           D  K+VV  P+E+ QE R +D  SP
Sbjct: 141 DPEKRVVSEPIEMTQEFRYFDSASP 165


>gi|218534347|sp|B0U1W7|NUOC_XYLFM RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
          Length = 249

 Score =  162 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 77/220 (35%), Positives = 105/220 (47%), Gaps = 51/220 (23%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  +     D + + F           GE++LDV   +  ++C  LRD     F  + DL
Sbjct: 1   MAEQTLSFVDCLTSRFPTVRVSVAQPRGEITLDVPVVEWCAVCKGLRD--EFDFEQLSDL 58

Query: 61  CGVDFLSRSNRFD----------------------------------------------- 73
           CGVD+L   N                                                  
Sbjct: 59  CGVDYLGYGNAEWDTTGVSAQGFSRGVAGKAVGRFAWGEFPSAGTNDGTQPWDVPQERFA 118

Query: 74  VVYHFLSPKYNRRLRVKIAVAEG--KSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLR 131
           V+ H +S ++NRRLRV+   +      V S+  ++PG +WFERE +D++GI FEGH DLR
Sbjct: 119 VLAHLISYRHNRRLRVRCFASNDALPIVASLTDVWPGVNWFEREAFDLFGIVFEGHLDLR 178

Query: 132 RILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVE 171
           RILTDYGF GHP RKDFP+TG VE+ YD++ K+VVY PV 
Sbjct: 179 RILTDYGFIGHPFRKDFPLTGNVEVRYDEEKKRVVYVPVT 218


>gi|289207895|ref|YP_003459961.1| NADH (or F420H2) dehydrogenase, subunit C [Thioalkalivibrio sp.
           K90mix]
 gi|288943526|gb|ADC71225.1| NADH (or F420H2) dehydrogenase, subunit C [Thioalkalivibrio sp.
           K90mix]
          Length = 239

 Score =  162 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 75/241 (31%), Positives = 110/241 (45%), Gaps = 54/241 (22%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  + ++  D +      ++     +  E+++D+           LRD     F  +IDL
Sbjct: 1   MAEQ-DNWIDALRAELGDALETVTEAYDEVTVDIRPQAWREAAEKLRD--AFGFEMLIDL 57

Query: 61  CGVDFLSRSNRFD---------------------------------------VVYHFLSP 81
           CGVD+L                                              V    LS 
Sbjct: 58  CGVDYLEYGQDEWGTESATNTGFSRGVEPATSGRFTFDDAPEDSLWDGPRFTVAVQLLSI 117

Query: 82  KYNRRLRVKIAVAEG--KSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGF 139
           ++NRRLR++  +A+     V S+V ++  A+WFERE +D++GI F GHPDLRRILTDYGF
Sbjct: 118 QHNRRLRMRAWLADDEFPEVESLVEVWASANWFEREAFDLFGILFSGHPDLRRILTDYGF 177

Query: 140 EGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELM----------QEHRDYDFLSPWEGVN 189
            GHP RKDFP+ G VE+ YD +  +VVY+PV +            +HR  +   P EG  
Sbjct: 178 VGHPFRKDFPLIGHVEMRYDAEQARVVYQPVTIEPRVLVPKVIRDDHRYSEGEKPGEGAE 237

Query: 190 S 190
           +
Sbjct: 238 N 238


>gi|56791606|gb|AAW30341.1| NADH dehydrogenase subunit 9 [Lonicera sp. Bergthorsson 0301]
          Length = 179

 Score =  162 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 73/145 (50%), Positives = 96/145 (66%)

Query: 40  VSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV 99
             L  FL+   +      ID+CGVD  SR  RF+VVY+ LS +YN R+RV+ +  E   +
Sbjct: 35  FQLLCFLKLHTYTRVQVSIDICGVDHPSRKRRFEVVYNLLSTRYNSRIRVQTSADEVTRI 94

Query: 100 PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYD 159
             +V  +P A  +EREVWDM+G+    HPDLRRI TDYGFEGHPLRKD P++G+VE+ YD
Sbjct: 95  SPVVSPFPSAGRWEREVWDMFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYD 154

Query: 160 DKVKKVVYRPVELMQEHRDYDFLSP 184
           D  K+VV  P+E+ QE R +D  SP
Sbjct: 155 DPEKRVVSEPIEMTQEFRYFDSASP 179


>gi|56791600|gb|AAW30338.1| NADH dehydrogenase subunit 9 [Platanus occidentalis]
          Length = 179

 Score =  162 bits (409), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 72/146 (49%), Positives = 96/146 (65%)

Query: 40  VSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV 99
             L  FL+   +      ID+CGVD  SR  RF+VV++ LS +YN R+RV+ +  E   +
Sbjct: 34  FQLLCFLKLHTYTRVQVSIDICGVDHPSRKRRFEVVHNLLSTRYNSRIRVQTSADEVTRI 93

Query: 100 PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYD 159
             +V  +P A  +EREVWDM G+    HPDLRRI TD+GFEGHPLRKD P++G+VE+ YD
Sbjct: 94  SPVVSPFPSAGRWEREVWDMSGVSSINHPDLRRISTDHGFEGHPLRKDLPLSGYVEVRYD 153

Query: 160 DKVKKVVYRPVELMQEHRDYDFLSPW 185
           D  K+VV  P+E+ QE R +D  SPW
Sbjct: 154 DPEKRVVSEPIEMTQEFRYFDSASPW 179


>gi|225468996|ref|XP_002263031.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 315

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 71/148 (47%), Positives = 97/148 (65%)

Query: 40  VSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV 99
             L  FL+   +      ID+ GVD  SR  RF+VVY+ LS +YN R+RV+ +  E   +
Sbjct: 164 FQLLCFLKLHTYTRVQVSIDIWGVDHPSRKRRFEVVYNLLSTQYNSRIRVQTSADEVTRI 223

Query: 100 PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYD 159
            S+V ++P +  +EREVWDM+G+    H DL R+ TDYGFEGHPLRKD P++G+VE+ YD
Sbjct: 224 SSVVSLFPSSVRWEREVWDMFGVSSINHLDLHRLSTDYGFEGHPLRKDLPLSGYVEVRYD 283

Query: 160 DKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           D  K+VV  P+E+ QE R +D  SPWE 
Sbjct: 284 DLEKRVVSEPIEMTQEFRYFDSASPWEQ 311


>gi|56791586|gb|AAW30331.1| NADH dehydrogenase subunit 9 [Calycanthus floridus]
          Length = 177

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 72/145 (49%), Positives = 96/145 (66%)

Query: 40  VSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV 99
             L  FL+   +      ID+CGVD  SR  RF+VV++ LS +YN R+RV+ +  E   +
Sbjct: 33  FQLLCFLKFHTYTRVQVSIDICGVDHPSRKRRFEVVHNLLSTRYNSRIRVQTSADEVTRI 92

Query: 100 PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYD 159
             +V  +P A W+EREVWDM G+    HPDLRRI TD+GFEGHPLRKD P++G+VE+ YD
Sbjct: 93  SPVVSPFPSAGWWEREVWDMSGVSSINHPDLRRISTDHGFEGHPLRKDLPLSGYVEVRYD 152

Query: 160 DKVKKVVYRPVELMQEHRDYDFLSP 184
           D  K+VV  P+E+ QE R +D  SP
Sbjct: 153 DPEKRVVSEPIEMTQEFRYFDSASP 177


>gi|56791592|gb|AAW30334.1| NADH dehydrogenase subunit 9 [Liriodendron tulipifera]
          Length = 179

 Score =  161 bits (408), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 72/145 (49%), Positives = 96/145 (66%)

Query: 40  VSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV 99
             L  FL+   +      ID+CGVD  SR  RF+VV++ LS +YN R+RV+ +  E   +
Sbjct: 35  FQLLCFLKFHTYTRVQVSIDICGVDHPSRKRRFEVVHNLLSTRYNSRIRVQTSADEVTRI 94

Query: 100 PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYD 159
             +V  +P A W+EREVWDM G+    HPDLRRI TD+GFEGHPLRKD P++G+VE+ YD
Sbjct: 95  SPVVSPFPSAGWWEREVWDMSGVSSINHPDLRRISTDHGFEGHPLRKDLPLSGYVEVRYD 154

Query: 160 DKVKKVVYRPVELMQEHRDYDFLSP 184
           D  K+VV  P+E+ QE R +D  SP
Sbjct: 155 DPEKRVVSEPIEMTQEFRYFDSASP 179


>gi|56791604|gb|AAW30340.1| NADH dehydrogenase subunit 9 [Agave attenuata]
          Length = 179

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 72/145 (49%), Positives = 96/145 (66%)

Query: 40  VSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV 99
             L  FL+   +      ID+CGVD  SR  RF+VV++ LS +YN R+RV+ +  E   +
Sbjct: 35  FPLLCFLKLHTYTRVQVSIDICGVDHPSRKRRFEVVHNLLSTRYNSRIRVQTSADEVTRI 94

Query: 100 PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYD 159
             +V  +P A  +EREVWDM G+    HPDLRRI TD+GFEGHPLRKDFP++G+VE+ YD
Sbjct: 95  SPVVSPFPSAGRWEREVWDMSGVSSINHPDLRRISTDHGFEGHPLRKDFPLSGYVEVRYD 154

Query: 160 DKVKKVVYRPVELMQEHRDYDFLSP 184
           D  K+VV  P+E+ QE R +D  SP
Sbjct: 155 DPEKRVVSEPIEMTQEFRYFDSASP 179


>gi|54295616|ref|YP_128031.1| NADH dehydrogenase I chain C [Legionella pneumophila str. Lens]
 gi|81822301|sp|Q5WT22|NUOC_LEGPL RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|53755448|emb|CAH16944.1| NADH dehydrogenase I chain C [Legionella pneumophila str. Lens]
 gi|307611656|emb|CBX01347.1| NADH dehydrogenase I chain C [Legionella pneumophila 130b]
          Length = 227

 Score =  160 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 79/203 (38%), Positives = 112/203 (55%), Gaps = 32/203 (15%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M +  E L + +    +  +    ++ GE++++ +  +L+ +   LRD     F  +IDL
Sbjct: 1   MTKN-EYLIEKLQVDLANHITELTSAYGEVTIECEVQNLLPVMIELRDREEFSFDELIDL 59

Query: 61  CGVDFLSR------------------------------SNRFDVVYHFLSPKYNRRLRVK 90
           CGVD+L                                  RF VVYH LS K N RLRVK
Sbjct: 60  CGVDYLHYGDYDWETESATEHGFSRGVERQEAKAYAVNKPRFAVVYHLLSTKKNHRLRVK 119

Query: 91  IAVAEGKSVPSIVGI-YPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFP 149
           + V E   +   V   +  A+WFERE +D+YGI F+GHPDLRR+LTDYGF GHP RKDFP
Sbjct: 120 LFVEESHLIVPSVHHLWKSANWFEREAYDLYGILFDGHPDLRRLLTDYGFIGHPFRKDFP 179

Query: 150 VTGFVELHYDDKVKKVVYRPVEL 172
           ++G VE+ YD K++KV+Y PV++
Sbjct: 180 LSGEVEMRYDAKLQKVIYAPVDI 202


>gi|56791584|gb|AAW30330.1| NADH dehydrogenase subunit 9 [Asarum sp. Qiu 96018]
          Length = 179

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 73/152 (48%), Positives = 96/152 (63%)

Query: 33  DVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIA 92
           + +   L  L  FL+   +      ID+ GVD  SR  RF VVY+ LS +YN R+RV+ +
Sbjct: 28  NTNTDYLFQLLCFLKFHTYTRVQVSIDISGVDQPSRKRRFSVVYNLLSTRYNSRIRVQTS 87

Query: 93  VAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTG 152
             E   +  +V  +P A W+EREVWDM G+    HPDLRRI TDYGFEGHPLRKD P++G
Sbjct: 88  ADEVTRISPVVSPFPSAGWWEREVWDMSGVSSINHPDLRRISTDYGFEGHPLRKDLPLSG 147

Query: 153 FVELHYDDKVKKVVYRPVELMQEHRDYDFLSP 184
           +VE+ YDD  K+VV  P+E+ QE   +D  SP
Sbjct: 148 YVEVRYDDPEKRVVSEPIEMTQELSYFDSASP 179


>gi|147801824|emb|CAN77857.1| hypothetical protein VITISV_001361 [Vitis vinifera]
          Length = 154

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 70/146 (47%), Positives = 96/146 (65%)

Query: 40  VSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV 99
             L  FL+   +      ID+ GVD  SR  RF+VVY+ LS +YN R+RV+ +  E   +
Sbjct: 6   FQLLCFLKLHTYTRVQVSIDIWGVDHPSRKRRFEVVYNLLSTQYNSRIRVQTSADEVTRI 65

Query: 100 PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYD 159
            S+V ++P +  +EREVWDM+G+    H DL R+ TDYGFEGHPLRKD P++G+VE+ YD
Sbjct: 66  SSVVSLFPSSVRWEREVWDMFGVSSINHLDLHRLSTDYGFEGHPLRKDLPLSGYVEVRYD 125

Query: 160 DKVKKVVYRPVELMQEHRDYDFLSPW 185
           D  K+VV  P+E+ QE R +D  SPW
Sbjct: 126 DLEKRVVSEPIEMTQEFRYFDSASPW 151


>gi|115610726|ref|XP_790261.2| PREDICTED: similar to LOC496233 protein [Strongylocentrotus
           purpuratus]
          Length = 151

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 71/137 (51%), Positives = 96/137 (70%), Gaps = 7/137 (5%)

Query: 73  DVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRR 132
           ++VY+ LS +YN R+R+K    E  +V S+V ++  ADW EREVWDMYG+FF  HPDLRR
Sbjct: 13  NLVYNLLSLRYNERIRIKTYTDELSAVDSLVPVFKAADWLEREVWDMYGVFFANHPDLRR 72

Query: 133 ILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPW------- 185
           ILTDYGFEGHPLRKDFP++GFVE+ YDD++K+VV  P+E+ QE R +D  SPW       
Sbjct: 73  ILTDYGFEGHPLRKDFPLSGFVEVRYDDELKRVVAEPLEMTQEFRKFDLSSPWESFPNHR 132

Query: 186 EGVNSLFAKEDSKDDMS 202
           E       +  ++++ S
Sbjct: 133 EPAPEQLEQGKTEEEKS 149


>gi|307579275|gb|ADN63244.1| NADH dehydrogenase subunit C [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 238

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 77/207 (37%), Positives = 102/207 (49%), Gaps = 51/207 (24%)

Query: 14  NSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFD 73
           + F           GE+SLDV   +  ++C  LRD     F  + DLCGVD+L   N   
Sbjct: 2   SRFPTVRVSVAQPRGEISLDVPVVEWCAVCKALRD--EFDFEQLSDLCGVDYLGYGNAEW 59

Query: 74  -----------------------------------------------VVYHFLSPKYNRR 86
                                                          V+ H +S ++NRR
Sbjct: 60  DTTDVSAQGFSRGVAGKAVGRFAWGEFPSAGSNDGTQPWDVPQERFAVLAHLISYRHNRR 119

Query: 87  LRVKIAVAEG--KSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPL 144
           LRV+   +      V S+  ++PG +WFERE +D++GI FEGHPDLRRILTDYGF GHP 
Sbjct: 120 LRVRCFASNDALPIVASLTDVWPGVNWFEREAFDLFGIVFEGHPDLRRILTDYGFIGHPF 179

Query: 145 RKDFPVTGFVELHYDDKVKKVVYRPVE 171
           RKDFP+TG VE+ YD++ K+VVY PV 
Sbjct: 180 RKDFPLTGNVEVRYDEEKKRVVYVPVT 206


>gi|269469170|gb|EEZ80712.1| NADH dehydrogenase I chain C [uncultured SUP05 cluster bacterium]
          Length = 204

 Score =  157 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 81/197 (41%), Positives = 109/197 (55%), Gaps = 32/197 (16%)

Query: 5   IEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD 64
           +EDL + ++  F       V +  EL+L ++  D++  C  LRD     F  ++DLCGVD
Sbjct: 1   MEDLKEQLIEEFGED--SLVEAFSELTLTINVNDIIKTCLKLRD--FFFFDTLVDLCGVD 56

Query: 65  FLSRSN---------------------------RFDVVYHFLSPKYNRRLRVKIAVAEGK 97
           +L+                              RF VVYH LS   N+RLRVK  V E +
Sbjct: 57  YLTYGQSDWDAGASSSGFSRGREAQGGDDRHSERFAVVYHLLSVSKNQRLRVKSFVDEAE 116

Query: 98  SV-PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVEL 156
            +  S+  I+  ADW+ERE +D+ GI FE H DLRRILTDYGF GHPLRKDFP+ G VE+
Sbjct: 117 PIIESVTDIWASADWYEREAFDLMGILFENHVDLRRILTDYGFVGHPLRKDFPMIGEVEM 176

Query: 157 HYDDKVKKVVYRPVELM 173
            YD+ + +VVY PV + 
Sbjct: 177 RYDEDLGRVVYEPVSIE 193


>gi|11466629|ref|NP_066312.1| NADH dehydrogenase subunit 9 [Malawimonas jakobiformis]
 gi|10178667|gb|AAG13679.1|AF295546_5 NADH dehydrogenase subunit 9 [Malawimonas jakobiformis]
          Length = 187

 Score =  157 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 75/175 (42%), Positives = 112/175 (64%), Gaps = 3/175 (1%)

Query: 11  YIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSN 70
           YI +  S       N+  E+ L +    L+ L   L+ + +    ++ID+  +D+  R+N
Sbjct: 16  YINSFLSF---NYFNNKKEIYLLISNIHLLRLLYILKKNTNILLKSLIDIICIDYPERTN 72

Query: 71  RFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDL 130
           RF++ YH LS KYN R+ +K  + E     SI+ IYP A W EREVWD YG+FF+ + DL
Sbjct: 73  RFELNYHLLSLKYNIRINIKTYIDEISLNNSIIKIYPNAMWSEREVWDSYGVFFKNNNDL 132

Query: 131 RRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPW 185
           RRILTDYGFEG P+RKDFP++G+ E++YDD  K + Y+ + L Q++R++D+ S W
Sbjct: 133 RRILTDYGFEGFPMRKDFPLSGYNEIYYDDLNKSIYYQKLYLSQQYRNFDYKSAW 187


>gi|89257088|ref|YP_514450.1| NADH dehydrogenase I [Francisella tularensis subsp. holarctica LVS]
 gi|167009480|ref|ZP_02274411.1| NADH dehydrogenase (ubiquinone) [Francisella tularensis subsp.
           holarctica FSC200]
 gi|122500211|sp|Q2A1F2|NUOC_FRATH RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|89144919|emb|CAJ80267.1| NADH dehydrogenase I [Francisella tularensis subsp. holarctica LVS]
          Length = 214

 Score =  157 bits (397), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 73/205 (35%), Positives = 108/205 (52%), Gaps = 34/205 (16%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCG-DLVSLCSFLRDDPHCCFVNIID 59
           M  K++D  + I    SG       S GE++  +    D+  +   L+      F  + D
Sbjct: 1   MSTKLQDHFEKITKILSGFGVEGCISYGEITFSIRDQRDIHLILKKLK--KEYLFEQLTD 58

Query: 60  LCGVDFLSRS-----------------------------NRFDVVYHFLSPKYNRRLRVK 90
           +  VD+L+                               NRF+++Y  LS   N R+RVK
Sbjct: 59  VTAVDYLTYGQSDWQVGKVVSQTGFSRGRQQDFKTAAVDNRFEIIYQLLSMANNVRIRVK 118

Query: 91  IAVAEGKSV--PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDF 148
             + + + +   S+  ++P A+W EREV+DM+GI+F  HPDLRR+LTDYGF GHPLRKDF
Sbjct: 119 CKLKDAQIILVDSVSDLWPSANWAEREVYDMFGIYFNNHPDLRRVLTDYGFVGHPLRKDF 178

Query: 149 PVTGFVELHYDDKVKKVVYRPVELM 173
           P TG+VE+ YD+ + +VVY PVE+ 
Sbjct: 179 PQTGYVEMRYDENLGRVVYEPVEID 203


>gi|148244391|ref|YP_001219085.1| NADH dehydrogenase I chain C [Candidatus Vesicomyosocius okutanii
           HA]
 gi|218534339|sp|A5CXF9|NUOC_VESOH RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|146326218|dbj|BAF61361.1| NADH dehydrogenase I chain C [Candidatus Vesicomyosocius okutanii
           HA]
          Length = 204

 Score =  157 bits (397), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 80/197 (40%), Positives = 106/197 (53%), Gaps = 32/197 (16%)

Query: 5   IEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD 64
           ++DL   +V  F       V S  EL+L V   +++  C  LRD     F  +IDLCGVD
Sbjct: 1   MQDLKTSLVEVFGK--TNLVESFDELTLTVGSQNIIKTCLKLRD--FFSFDTLIDLCGVD 56

Query: 65  FLS---------------------------RSNRFDVVYHFLSPKYNRRLRVKIAVAEGK 97
           +L+                              RF VVYH LS   N+R+RVK  V E +
Sbjct: 57  YLTYGQSDWNGNASASGFSRGRSHQGLKDIHEERFAVVYHLLSVSKNKRIRVKSFVDEVE 116

Query: 98  SV-PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVEL 156
            +  S+  I+  ADW+ERE +D+ GI FE H DLRRILTDYGF GHPLRKDFP+ G VE+
Sbjct: 117 PIIKSVTDIWASADWYEREAFDLMGILFENHTDLRRILTDYGFTGHPLRKDFPMIGEVEM 176

Query: 157 HYDDKVKKVVYRPVELM 173
            YD+ + +V+Y  V + 
Sbjct: 177 RYDEDLCRVIYEKVSIE 193


>gi|118498239|ref|YP_899289.1| NADH dehydrogenase I, C subunit [Francisella tularensis subsp.
           novicida U112]
 gi|194324423|ref|ZP_03058196.1| NADH (or f420h2) dehydrogenase, subunit c family [Francisella
           tularensis subsp. novicida FTE]
 gi|218534281|sp|A0Q8H0|NUOC_FRATN RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|118424145|gb|ABK90535.1| NADH dehydrogenase I, C subunit [Francisella novicida U112]
 gi|194321488|gb|EDX18973.1| NADH (or f420h2) dehydrogenase, subunit c family [Francisella
           tularensis subsp. novicida FTE]
          Length = 214

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 73/205 (35%), Positives = 107/205 (52%), Gaps = 34/205 (16%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCG-DLVSLCSFLRDDPHCCFVNIID 59
           M  K++D  D I    SG       S GE++  +    D+  +   L+      F  + D
Sbjct: 1   MSTKLQDHFDKITKILSGFGVEGCISYGEITFSIRDQRDIHLILKKLK--KEYLFEQLTD 58

Query: 60  LCGVDFLSRS-----------------------------NRFDVVYHFLSPKYNRRLRVK 90
           +  VD+L+                               NRF+++Y  LS   N R+RVK
Sbjct: 59  VTAVDYLTYGQSDWQVGKVVSQTGFSRGRQQDFKTAAVDNRFEIIYQLLSMANNVRIRVK 118

Query: 91  IAVAEGKSV--PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDF 148
             + + + +   S+  ++  A+W EREV+DM+GI+F  HPDLRR+LTDYGF GHPLRKDF
Sbjct: 119 CKLKDAQIILVDSVSDLWSSANWAEREVYDMFGIYFNNHPDLRRVLTDYGFVGHPLRKDF 178

Query: 149 PVTGFVELHYDDKVKKVVYRPVELM 173
           P TG+VE+ YD+ + +VVY PVE+ 
Sbjct: 179 PQTGYVEMRYDENLGRVVYEPVEID 203


>gi|187930990|ref|YP_001890974.1| NADH dehydrogenase I, C subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|224456274|ref|ZP_03664747.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|218534272|sp|B2SEV1|NUOC_FRATM RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|187711899|gb|ACD30196.1| NADH dehydrogenase I, C subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|282158321|gb|ADA77712.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 214

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/205 (36%), Positives = 108/205 (52%), Gaps = 34/205 (16%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCG-DLVSLCSFLRDDPHCCFVNIID 59
           M  K++D  D I    SG       S GE++  +    D+  +   L+      F  + D
Sbjct: 1   MSTKLQDHFDKITKILSGFGVEGCISYGEITFSIRDQRDIHLILKKLK--KEYLFEQLTD 58

Query: 60  LCGVDFLSRS-----------------------------NRFDVVYHFLSPKYNRRLRVK 90
           +  VD+L+                               NRF+++Y  LS   N R+RVK
Sbjct: 59  VTAVDYLTYGQSDWQVGKVVSQTGFSRGRQQDFKTAAVDNRFEIIYQLLSMANNVRIRVK 118

Query: 91  IAVAEGKSV--PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDF 148
             + + + +   S+  ++P A+W EREV+DM+GI+F  HPDLRR+LTDYGF GHPLRKDF
Sbjct: 119 CKLKDAQIILVDSVSDLWPSANWAEREVYDMFGIYFNNHPDLRRVLTDYGFVGHPLRKDF 178

Query: 149 PVTGFVELHYDDKVKKVVYRPVELM 173
           P TG+VE+ YD+ + +VVY PVE+ 
Sbjct: 179 PQTGYVEMRYDENLGRVVYEPVEID 203


>gi|118602277|ref|YP_903492.1| NADH (or F420H2) dehydrogenase, subunit C [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|218534343|sp|A1AVR4|NUOC_RUTMC RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|118567216|gb|ABL02021.1| NADH dehydrogenase subunit C [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 204

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 83/197 (42%), Positives = 110/197 (55%), Gaps = 32/197 (16%)

Query: 5   IEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD 64
           ++DL   ++  F    R  V + GEL+L VD  D++  C  LRD     F  +IDLCGVD
Sbjct: 1   MQDLKASLIKVFGE--RHLVEAFGELTLIVDSQDIIKTCLKLRD--FFYFDTLIDLCGVD 56

Query: 65  FLS---------------------------RSNRFDVVYHFLSPKYNRRLRVKIAVAEGK 97
           +L+                              RF VVYH LS   N+R+RVK  V E +
Sbjct: 57  YLTYGQSDWNGNASASGFSRGRNHQGSKDRHEQRFVVVYHLLSVSKNKRIRVKSFVDEAE 116

Query: 98  SV-PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVEL 156
            +  S+  I+  ADW+ERE +D+ GI FE H DLRRILTDYGF+GHPLRKDFP+ G VE+
Sbjct: 117 PIIKSVTDIWASADWYEREAFDLMGILFENHTDLRRILTDYGFKGHPLRKDFPMIGEVEM 176

Query: 157 HYDDKVKKVVYRPVELM 173
            YD+ + +VVY  V + 
Sbjct: 177 RYDEDLGRVVYEKVSIE 193


>gi|134301248|ref|YP_001121216.1| NADH dehydrogenase I subunit C [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|218534286|sp|A4IVZ4|NUOC_FRATW RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|134049025|gb|ABO46096.1| NADH dehydrogenase I subunit C [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 214

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/205 (36%), Positives = 108/205 (52%), Gaps = 34/205 (16%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCG-DLVSLCSFLRDDPHCCFVNIID 59
           M  K++D  D I    SG       S GE++  +    D+  +   L+      F  + D
Sbjct: 1   MSTKLQDHFDKITKILSGFGVEGCISYGEITFSIRDQRDIHLILKKLK--KEYLFEQLTD 58

Query: 60  LCGVDFLSRS-----------------------------NRFDVVYHFLSPKYNRRLRVK 90
           +  VD+L+                               NRF+++Y  LS   N R+RVK
Sbjct: 59  VTAVDYLTYGQSDWQVGKVVSQTGFSRGRQQDFKTAAVDNRFEIIYQLLSMANNVRIRVK 118

Query: 91  IAVAEGKSV--PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDF 148
             + + + +   S+  ++P A+W EREV+DM+GI+F  HPDLRR+LTDYGF GHPLRKDF
Sbjct: 119 CKLKDAQIILVDSVSDLWPSANWTEREVYDMFGIYFNNHPDLRRVLTDYGFVGHPLRKDF 178

Query: 149 PVTGFVELHYDDKVKKVVYRPVELM 173
           P TG+VE+ YD+ + +VVY PVE+ 
Sbjct: 179 PQTGYVEMRYDENLGRVVYEPVEID 203


>gi|312088396|ref|XP_003145846.1| hypothetical protein LOAG_10271 [Loa loa]
 gi|307758994|gb|EFO18228.1| hypothetical protein LOAG_10271 [Loa loa]
          Length = 144

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 64/121 (52%), Positives = 87/121 (71%)

Query: 74  VVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRI 133
           V+Y  LS ++N R+RV+    E   + SI  I+ GA+W+EREV+DMYG++F  HPDLRRI
Sbjct: 1   VIYALLSIRFNARIRVRTYTDEIAPLESITSIFKGANWYEREVYDMYGVWFNNHPDLRRI 60

Query: 134 LTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEGVNSLFA 193
           LTDYGFEGHP RKDFP++G+VEL YD ++ + VY P EL QE R +D  +PWE + +   
Sbjct: 61  LTDYGFEGHPFRKDFPLSGYVELRYDSELGRCVYEPTELAQEFRKFDLKTPWESMPNFRD 120

Query: 194 K 194
           +
Sbjct: 121 E 121


>gi|332678975|gb|AEE88104.1| NADH-ubiquinone oxidoreductase chain C [Francisella cf. novicida
           Fx1]
          Length = 214

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 73/205 (35%), Positives = 107/205 (52%), Gaps = 34/205 (16%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCG-DLVSLCSFLRDDPHCCFVNIID 59
           M  K++D  D I    SG       S GE++  +    D+  +   L+      F  + D
Sbjct: 1   MSTKLQDHFDKITKILSGFGVEGCISYGEITFSIRDQRDIHLILKKLK--KEYLFEQLTD 58

Query: 60  LCGVDFLSRS-----------------------------NRFDVVYHFLSPKYNRRLRVK 90
           +  VD+L+                               NRF+++Y  LS   N R+RVK
Sbjct: 59  VTAVDYLTYGQSDWQVGKVVSQTGFSRGRQQDFKTAAVDNRFEIIYQLLSMANNVRIRVK 118

Query: 91  IAVAEGKSV--PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDF 148
             + + + +   S+  ++  A+W EREV+DM+GI+F  HPDLRR+LTDYGF GHPLRKDF
Sbjct: 119 CKLKDARIILVDSVSDLWSSANWAEREVYDMFGIYFNNHPDLRRVLTDYGFVGHPLRKDF 178

Query: 149 PVTGFVELHYDDKVKKVVYRPVELM 173
           P TG+VE+ YD+ + +VVY PVE+ 
Sbjct: 179 PQTGYVEMRYDENLGRVVYEPVEID 203


>gi|208780266|ref|ZP_03247608.1| respiratory-chain NADH dehydrogenase, 30 kd subunit domain
           [Francisella novicida FTG]
 gi|208743915|gb|EDZ90217.1| respiratory-chain NADH dehydrogenase, 30 kd subunit domain
           [Francisella novicida FTG]
          Length = 214

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 73/205 (35%), Positives = 107/205 (52%), Gaps = 34/205 (16%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCG-DLVSLCSFLRDDPHCCFVNIID 59
           M  K++D  D I    SG       S GE++  +    D+  +   L+      F  + D
Sbjct: 1   MSTKLQDHFDKITKILSGFGVEGCISYGEITFSIRDQRDIHLILKKLK--KEYLFEQLTD 58

Query: 60  LCGVDFLSRS-----------------------------NRFDVVYHFLSPKYNRRLRVK 90
           +  VD+L+                               NRF+++Y  LS   N R+RVK
Sbjct: 59  VTAVDYLAYGQSDWQVGKVVSQTGFSRGRQQDFKTAAVDNRFEIIYQLLSMANNVRIRVK 118

Query: 91  IAVAEGKSV--PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDF 148
             + + + +   S+  ++  A+W EREV+DM+GI+F  HPDLRR+LTDYGF GHPLRKDF
Sbjct: 119 CKLKDAQIILVDSVSDLWSSANWAEREVYDMFGIYFNNHPDLRRVLTDYGFVGHPLRKDF 178

Query: 149 PVTGFVELHYDDKVKKVVYRPVELM 173
           P TG+VE+ YD+ + +VVY PVE+ 
Sbjct: 179 PQTGYVEMRYDENLGRVVYEPVEID 203


>gi|290952991|ref|ZP_06557612.1| NADH-quinone oxidoreductase subunit C [Francisella tularensis
           subsp. holarctica URFT1]
 gi|295313811|ref|ZP_06804384.1| NADH-quinone oxidoreductase subunit C [Francisella tularensis
           subsp. holarctica URFT1]
          Length = 214

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 73/205 (35%), Positives = 108/205 (52%), Gaps = 34/205 (16%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCG-DLVSLCSFLRDDPHCCFVNIID 59
           M  K++D  + I    SG       S GE++  +    D+  +   L+      F  + D
Sbjct: 1   MSTKLQDHFEKITKILSGFGVEGCISYGEITFSIRDQRDIHLILKKLK--KEYLFEQLTD 58

Query: 60  LCGVDFLSRS-----------------------------NRFDVVYHFLSPKYNRRLRVK 90
           +  VD+L+                               NRF+++Y  LS   N R+RVK
Sbjct: 59  VTAVDYLTYGQSDWQVGKVVSQTGFSRGRQQDFKTAAVDNRFEIIYQLLSMANNVRIRVK 118

Query: 91  IAVAEGKSV--PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDF 148
             + + + +   S+  ++P A+W EREV+DM+GI+F  HPDLRR+LTDYGF GHPLRKDF
Sbjct: 119 CKLKDAQIILVDSVSDLWPSANWVEREVYDMFGIYFNNHPDLRRVLTDYGFVGHPLRKDF 178

Query: 149 PVTGFVELHYDDKVKKVVYRPVELM 173
           P TG+VE+ YD+ + +VVY PVE+ 
Sbjct: 179 PQTGYVEMRYDENLGRVVYEPVEID 203


>gi|254496123|ref|ZP_05109022.1| NADH dehydrogenase I, C subunit [Legionella drancourtii LLAP12]
 gi|254354664|gb|EET13300.1| NADH dehydrogenase I, C subunit [Legionella drancourtii LLAP12]
          Length = 225

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 78/203 (38%), Positives = 108/203 (53%), Gaps = 32/203 (15%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M +  + L + +    +  +     +  E++++ D  +L +L   LRD     F  +IDL
Sbjct: 1   MTKN-DYLVEKLKTELASHMNAVTVAYDEVTIECDVVNLKTLMLELRDLDAFSFDQLIDL 59

Query: 61  CGVDFLSR------------------------------SNRFDVVYHFLSPKYNRRLRVK 90
           C VD+L                                  RF VVYH LS   N R+RVK
Sbjct: 60  CAVDYLLYGEYDWETDSATENGFSRGVERQDAKAYTLDKPRFAVVYHLLSTNKNHRVRVK 119

Query: 91  IAVAEGKSVPSIVGIYP-GADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFP 149
           + V E   +   V     GA+WFERE +D+YG+ FEGHPDLRRILTDYGF GHP RKDFP
Sbjct: 120 VFVDEKHLIVPSVHHIWKGANWFEREAYDLYGVLFEGHPDLRRILTDYGFIGHPFRKDFP 179

Query: 150 VTGFVELHYDDKVKKVVYRPVEL 172
           ++G VE+ YD K++KV+Y PV++
Sbjct: 180 LSGQVEMRYDAKLQKVIYAPVDI 202


>gi|289606895|emb|CBI60959.1| unnamed protein product [Sordaria macrospora]
          Length = 94

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 53/84 (63%), Positives = 66/84 (78%)

Query: 105 IYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKK 164
               A W EREV+DMYG+ F G+ DLRRILTDYGF GHPLRKDFP+TG+VE+ Y ++ K+
Sbjct: 11  HLVHAGWLEREVYDMYGVLFTGNADLRRILTDYGFRGHPLRKDFPLTGYVEMRYSEEAKR 70

Query: 165 VVYRPVELMQEHRDYDFLSPWEGV 188
           VVY PV+L Q+ R +DF+SPWEG 
Sbjct: 71  VVYEPVKLAQDFRTFDFMSPWEGA 94


>gi|71897768|ref|ZP_00679994.1| NADH (or F420H2) dehydrogenase, subunit C [Xylella fastidiosa
           Ann-1]
 gi|71732323|gb|EAO34377.1| NADH (or F420H2) dehydrogenase, subunit C [Xylella fastidiosa
           Ann-1]
          Length = 227

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 75/194 (38%), Positives = 100/194 (51%), Gaps = 51/194 (26%)

Query: 27  VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFD------------- 73
            GE++LDV   +  ++C  LRD     F  + DLCGVD+L   N                
Sbjct: 5   HGEITLDVPVVEWCAVCKGLRD--EFDFEQLSDLCGVDYLGYGNAEWDTTDVSAQGFSRG 62

Query: 74  ----------------------------------VVYHFLSPKYNRRLRVKIAVAEG--K 97
                                             V+ H +S ++NRRLRV+   +     
Sbjct: 63  VAGKAVGRFAWGEFPSAGSNDGTQPWDVPQERFAVLAHLISYRHNRRLRVRCFASNDALP 122

Query: 98  SVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELH 157
            V S+  ++PG +WFERE +D++GI FEGHPDLRRILTDYGF GHP RKDFP+TG VE+ 
Sbjct: 123 IVASLTDVWPGVNWFEREAFDLFGIVFEGHPDLRRILTDYGFIGHPFRKDFPLTGNVEVR 182

Query: 158 YDDKVKKVVYRPVE 171
           YD++ K+VVY PV 
Sbjct: 183 YDEEKKRVVYVPVT 196


>gi|261856548|ref|YP_003263831.1| NADH (or F420H2) dehydrogenase, subunit C [Halothiobacillus
           neapolitanus c2]
 gi|261837017|gb|ACX96784.1| NADH (or F420H2) dehydrogenase, subunit C [Halothiobacillus
           neapolitanus c2]
          Length = 244

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 61/208 (29%), Positives = 94/208 (45%), Gaps = 42/208 (20%)

Query: 8   LGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLS 67
           L   + +     +     ++ E++++V       +   L   P   F   +DLCG+D+L 
Sbjct: 11  LKPALESVLGDLLVNLTVALDEITIEVAAAHWQEVAKRLASAPETHFDQCVDLCGIDYLE 70

Query: 68  RSNRFD----------------------------------------VVYHFLSPKYNRRL 87
              +                                          VV H LS K+N R+
Sbjct: 71  FGRQEWAGEESVSYAGYSRGVEPASNARLKFGDEMRSGNQDRPRFAVVAHLLSYKHNWRV 130

Query: 88  RVKIAVAEGKSVPSIVGIYPGA--DWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLR 145
           RV+I   + +       +      +WFERE +D++GI F+ HPD+RRILTDYGF GHP+R
Sbjct: 131 RVRIPCVDAELPTVPSVVSVWPVVNWFEREAFDLFGILFDDHPDMRRILTDYGFVGHPMR 190

Query: 146 KDFPVTGFVELHYDDKVKKVVYRPVELM 173
           KDFP+ G VE+ +D +  +VVY PV + 
Sbjct: 191 KDFPLIGNVEVRFDPEKNRVVYEPVSIE 218


>gi|227822751|ref|YP_002826723.1| NADH dehydrogenase subunit C1 [Sinorhizobium fredii NGR234]
 gi|227341752|gb|ACP25970.1| NADH dehydrogenase subunit C1 [Sinorhizobium fredii NGR234]
          Length = 187

 Score =  155 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 63/155 (40%), Positives = 85/155 (54%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  +   +   I   F  +V     S G     V    +V LC FL++ P   F  + D+
Sbjct: 1   MSVEASVISTLISERFGEAVEELGVSHGLHGFAVPPDKIVELCRFLKEHPALRFDFLSDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
           CGVD    + R++ VYH  S     R+R+K  + +   VPS+ G++  A+W ERE WDMY
Sbjct: 61  CGVDHFPEAPRYEAVYHLYSLPNKWRIRIKCRLGDPPLVPSVTGVWRTANWHEREAWDMY 120

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVE 155
           GI FEGHPDLRRI    GFEG P RKDFP+ G+ +
Sbjct: 121 GISFEGHPDLRRIYMWEGFEGFPQRKDFPLRGYKD 155


>gi|241667717|ref|ZP_04755295.1| NADH dehydrogenase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 215

 Score =  155 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 71/205 (34%), Positives = 109/205 (53%), Gaps = 34/205 (16%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCG-DLVSLCSFLRDDPHCCFVNIID 59
           M  +++D  + +    +G       + GE+++ +    D+  +   L+      F  + D
Sbjct: 1   MSARLQDHFNNVEKILNGFGVECYVAYGEINISIKDQRDIHLVLKKLK--KEYHFKQLTD 58

Query: 60  LCGVDFLSRS-----------------------------NRFDVVYHFLSPKYNRRLRVK 90
           +  VD+L+                               NRF+++Y  LS   N R+RVK
Sbjct: 59  ITAVDYLTYGQSDWQVGKVVSQTGFSRGRQQGFKTADVNNRFEIIYQLLSMANNVRVRVK 118

Query: 91  IAVAEGK--SVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDF 148
             + + +   V S+  ++P A+W EREV+DM+GI+F  HPDLRR+LTDYGF GHPLRKDF
Sbjct: 119 CKLKDAQIIMVDSVEDLWPSANWAEREVYDMFGIYFNNHPDLRRVLTDYGFVGHPLRKDF 178

Query: 149 PVTGFVELHYDDKVKKVVYRPVELM 173
           P TG+VE+ YD+ + KVVY PVE+ 
Sbjct: 179 PQTGYVEMRYDENLGKVVYEPVEID 203


>gi|167627155|ref|YP_001677655.1| NADH dehydrogenase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|218534285|sp|B0TWP6|NUOC_FRAP2 RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|167597156|gb|ABZ87154.1| NADH dehydrogenase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
          Length = 215

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 71/205 (34%), Positives = 109/205 (53%), Gaps = 34/205 (16%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCG-DLVSLCSFLRDDPHCCFVNIID 59
           M  +++D  + +    +G       + GE+++ +    D+  +   L+      F  + D
Sbjct: 1   MSARLQDHFNNVEKILNGFSVECYVAYGEINISIKDQRDIHLVLKKLK--KEYHFKQLTD 58

Query: 60  LCGVDFLSRS-----------------------------NRFDVVYHFLSPKYNRRLRVK 90
           +  VD+L+                               NRF+++Y  LS   N R+RVK
Sbjct: 59  ITAVDYLTYGQSDWQVGKVVSQTGFSRGRQQGFKTADVNNRFEIIYQLLSMANNVRVRVK 118

Query: 91  IAVAEGK--SVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDF 148
             + + +   V S+  ++P A+W EREV+DM+GI+F  HPDLRR+LTDYGF GHPLRKDF
Sbjct: 119 CKLKDAQIIMVDSVEDLWPSANWAEREVYDMFGIYFNNHPDLRRVLTDYGFVGHPLRKDF 178

Query: 149 PVTGFVELHYDDKVKKVVYRPVELM 173
           P TG+VE+ YD+ + KVVY PVE+ 
Sbjct: 179 PQTGYVEMRYDENLGKVVYEPVEID 203


>gi|190575276|ref|YP_001973121.1| NADH dehydrogenase subunit C [Stenotrophomonas maltophilia K279a]
 gi|194366602|ref|YP_002029212.1| NADH dehydrogenase subunit C [Stenotrophomonas maltophilia R551-3]
 gi|254525186|ref|ZP_05137241.1| NADH-ubiquinone oxidoreductase Nqo5 subunit [Stenotrophomonas sp.
           SKA14]
 gi|218534323|sp|B4SQT4|NUOC_STRM5 RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|218534324|sp|B2FNX7|NUOC_STRMK RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|190013198|emb|CAQ46831.1| putative respiratory-chain NADH dehydrogenase, 30 kDa subunit
           [Stenotrophomonas maltophilia K279a]
 gi|194349406|gb|ACF52529.1| NADH dehydrogenase (ubiquinone) [Stenotrophomonas maltophilia
           R551-3]
 gi|219722777|gb|EED41302.1| NADH-ubiquinone oxidoreductase Nqo5 subunit [Stenotrophomonas sp.
           SKA14]
          Length = 249

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 71/221 (32%), Positives = 95/221 (42%), Gaps = 53/221 (23%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  +     D +   F+G+    V   GE++L+V   +  +    LRD     F   +DL
Sbjct: 1   MAEQ-ASFIDRLSARFAGAKVIVVEPRGEVTLEVPAAEWHATALALRD--EFGFEQAVDL 57

Query: 61  CGVDFLSRSNRFDVVYHFLS---------------------------------------- 80
           CGVD+L   +         S                                        
Sbjct: 58  CGVDYLGYGSDEWDTADVSSQGFSRGVEGKAQGRFAWGEFPTEENGADGARPQHMPTQRF 117

Query: 81  ----------PKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDL 130
                           LR          V S+ GI+PG +WFERE +D+YG+ FEGHPDL
Sbjct: 118 AVVAQLRSYQHNLMMHLRCFAPDEALPVVSSLTGIWPGLNWFEREAFDLYGVIFEGHPDL 177

Query: 131 RRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVE 171
           RRILTDYGF GHP RKDFP+ G VE+ YD++ K+V+Y PV 
Sbjct: 178 RRILTDYGFVGHPFRKDFPLIGNVEVRYDEEKKRVIYEPVT 218


>gi|291298800|ref|YP_003510078.1| NADH (or F420H2) dehydrogenase subunit C [Stackebrandtia
           nassauensis DSM 44728]
 gi|290568020|gb|ADD40985.1| NADH (or F420H2) dehydrogenase, subunit C [Stackebrandtia
           nassauensis DSM 44728]
          Length = 213

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 60/159 (37%), Positives = 94/159 (59%), Gaps = 3/159 (1%)

Query: 6   EDLGDYIVNSF-SGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD 64
           ++L D + +   + +++  V   GEL++ V    + ++C  LRD  +  F     + GVD
Sbjct: 44  DELVDSLSSEVDTDAIQAVVVDRGELTIHVAPNRVKAVCQALRDSENLRFELCNSVSGVD 103

Query: 65  FLSRSNRFDVVYHFLSPKYNRRLRVKIAVA-EGKSVPSIVGIYPGADWFEREVWDMYGIF 123
           +  ++NR  V YH  S  + RR+RV+ AV+ E   V S+  +YP ADW ERE +DM+G+ 
Sbjct: 104 YPEQTNRLHVTYHLTSMTFRRRVRVETAVSIEDPHVDSVTEVYPTADWQERETYDMFGVV 163

Query: 124 FEGHPDLRRILTDYGFEGHPLRKDFPVTG-FVELHYDDK 161
           F+GHP+L RIL    ++GHP RKD+P+ G  VE   D +
Sbjct: 164 FDGHPNLTRILMPDDWQGHPQRKDYPLGGIPVEYKNDAE 202


>gi|262216826|gb|ACY37794.1| NADH dehydrogenase subunit 9 [Phytophthora palmivora]
 gi|262216829|gb|ACY37796.1| NADH dehydrogenase subunit 9 [Phytophthora gonapodyides]
          Length = 116

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 68/111 (61%), Positives = 89/111 (80%)

Query: 76  YHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILT 135
           Y+ LS ++N RL+VKI + E + V SIV IY  A+W EREVWDM+GIFF  HPDLRRILT
Sbjct: 1   YNLLSIRFNSRLKVKITINEVQPVDSIVPIYKAANWCEREVWDMFGIFFSNHPDLRRILT 60

Query: 136 DYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWE 186
           DYGFEGHPLRKDFP++GF+E+ Y++  K+VVY PV L Q++R ++F +PW+
Sbjct: 61  DYGFEGHPLRKDFPLSGFLEVFYNELKKRVVYEPVNLAQQYRLFEFNNPWD 111


>gi|182680807|ref|YP_001828967.1| NADH dehydrogenase subunit C [Xylella fastidiosa M23]
 gi|182630917|gb|ACB91693.1| NADH (or F420H2) dehydrogenase, subunit C [Xylella fastidiosa M23]
          Length = 228

 Score =  154 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 76/194 (39%), Positives = 100/194 (51%), Gaps = 51/194 (26%)

Query: 27  VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFD------------- 73
            GE+SLDV   +  ++C  LRD     F  + DLCGVD+L   N                
Sbjct: 5   RGEISLDVPVVEWCAVCKALRD--EFDFEQLSDLCGVDYLGYGNAEWDTTDVSAQGFSRG 62

Query: 74  ----------------------------------VVYHFLSPKYNRRLRVKIAVAEG--K 97
                                             V+ H +S ++NRRLRV+   +     
Sbjct: 63  VAGKAVGRFAWGEFPSAGSNDGTQPWDVPQERFAVLAHLISYRHNRRLRVRCFASNDALP 122

Query: 98  SVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELH 157
            V S+  ++PG +WFERE +D++GI FEGHPDLRRILTDYGF GHP RKDFP+TG VE+ 
Sbjct: 123 IVASLTDVWPGVNWFEREAFDLFGIVFEGHPDLRRILTDYGFIGHPFRKDFPLTGNVEVR 182

Query: 158 YDDKVKKVVYRPVE 171
           YD++ K+VVY PV 
Sbjct: 183 YDEEKKRVVYVPVT 196


>gi|262216814|gb|ACY37786.1| NADH dehydrogenase subunit 9 [Phytophthora cinnamomi]
          Length = 113

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 66/111 (59%), Positives = 89/111 (80%)

Query: 76  YHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILT 135
           Y+ LS ++N RL+VKI + E + + SI+ IY  A+W EREVWDM+GIFF  HPDLRRILT
Sbjct: 1   YNLLSIRFNSRLKVKITINELQPIDSIISIYKAANWCEREVWDMFGIFFSNHPDLRRILT 60

Query: 136 DYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWE 186
           DYGFEGHPLRKDFP++GF+E+ Y++  K+VVY P+ L Q++R ++F SPW+
Sbjct: 61  DYGFEGHPLRKDFPLSGFLEVFYNELKKRVVYEPINLSQQYRLFEFNSPWD 111


>gi|115315445|ref|YP_764168.1| NADH dehydrogenase (ubiquinone) [Francisella tularensis subsp.
           holarctica OSU18]
 gi|254368324|ref|ZP_04984342.1| hypothetical protein FTHG_01692 [Francisella tularensis subsp.
           holarctica 257]
 gi|254368967|ref|ZP_04984980.1| NADH dehydrogenase [Francisella tularensis subsp. holarctica
           FSC022]
 gi|122324570|sp|Q0BK53|NUOC_FRATO RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|115130344|gb|ABI83531.1| NADH dehydrogenase (ubiquinone) [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134254132|gb|EBA53226.1| hypothetical protein FTHG_01692 [Francisella tularensis subsp.
           holarctica 257]
 gi|157121888|gb|EDO66058.1| NADH dehydrogenase [Francisella tularensis subsp. holarctica
           FSC022]
          Length = 216

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 72/204 (35%), Positives = 107/204 (52%), Gaps = 34/204 (16%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCG-DLVSLCSFLRDDPHCCFVNIIDL 60
             K++D  + I    SG       S GE++  +    D+  +   L+      F  + D+
Sbjct: 4   STKLQDHFEKITKILSGFGVEGCISYGEITFSIRDQRDIHLILKKLK--KEYLFEQLTDV 61

Query: 61  CGVDFLSRS-----------------------------NRFDVVYHFLSPKYNRRLRVKI 91
             VD+L+                               NRF+++Y  LS   N R+RVK 
Sbjct: 62  TAVDYLTYGQSDWQVGKVVSQTGFSRGRQQDFKTAAVDNRFEIIYQLLSMANNVRIRVKC 121

Query: 92  AVAEGKSV--PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFP 149
            + + + +   S+  ++P A+W EREV+DM+GI+F  HPDLRR+LTDYGF GHPLRKDFP
Sbjct: 122 KLKDAQIILVDSVSDLWPSANWAEREVYDMFGIYFNNHPDLRRVLTDYGFVGHPLRKDFP 181

Query: 150 VTGFVELHYDDKVKKVVYRPVELM 173
            TG+VE+ YD+ + +VVY PVE+ 
Sbjct: 182 QTGYVEMRYDENLGRVVYEPVEID 205


>gi|56707213|ref|YP_169109.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|110669683|ref|YP_666240.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis
           FSC198]
 gi|254371429|ref|ZP_04987430.1| NADH dehydrogenase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254373580|ref|ZP_04989066.1| NADH dehydrogenase I [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|254874051|ref|ZP_05246761.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|81598107|sp|Q5NIN3|NUOC_FRATT RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|123359659|sp|Q14K36|NUOC_FRAT1 RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|56603705|emb|CAG44666.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|110320016|emb|CAL08049.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis
           FSC198]
 gi|151569668|gb|EDN35322.1| NADH dehydrogenase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|151571304|gb|EDN36958.1| NADH dehydrogenase I [Francisella novicida GA99-3549]
 gi|254840050|gb|EET18486.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis
           MA00-2987]
          Length = 216

 Score =  153 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 73/204 (35%), Positives = 107/204 (52%), Gaps = 34/204 (16%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCG-DLVSLCSFLRDDPHCCFVNIIDL 60
             K++D  D I    SG       S GE++  +    D+  +   L+      F  + D+
Sbjct: 4   STKLQDHFDKITKILSGFGVEGCISYGEITFSIRDQRDIHLILKKLK--KEYLFEQLTDV 61

Query: 61  CGVDFLSRS-----------------------------NRFDVVYHFLSPKYNRRLRVKI 91
             VD+L+                               NRF+++Y  LS   N R+RVK 
Sbjct: 62  TAVDYLTYGQSDWQVGKVVSQTGFSRGRQQDFKTAAVDNRFEIIYQLLSMANNVRIRVKC 121

Query: 92  AVAEGKSV--PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFP 149
            + + + +   S+  ++P A+W EREV+DM+GI+F  HPDLRR+LTDYGF GHPLRKDFP
Sbjct: 122 KLKDAQIILVDSVSDLWPSANWAEREVYDMFGIYFNNHPDLRRVLTDYGFVGHPLRKDFP 181

Query: 150 VTGFVELHYDDKVKKVVYRPVELM 173
            TG+VE+ YD+ + +VVY PVE+ 
Sbjct: 182 QTGYVEMRYDENLGRVVYEPVEID 205


>gi|254375047|ref|ZP_04990527.1| NADH-quinone oxidoreductase chain C [Francisella novicida
           GA99-3548]
 gi|151572765|gb|EDN38419.1| NADH-quinone oxidoreductase chain C [Francisella novicida
           GA99-3548]
          Length = 216

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 72/204 (35%), Positives = 106/204 (51%), Gaps = 34/204 (16%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCG-DLVSLCSFLRDDPHCCFVNIIDL 60
             K++D  D I    SG       S GE++  +    D+  +   L+      F  + D+
Sbjct: 4   STKLQDHFDKITKILSGFGVEGCISYGEITFSIRDQRDIHLILKKLK--KEYLFEQLTDV 61

Query: 61  CGVDFLSRS-----------------------------NRFDVVYHFLSPKYNRRLRVKI 91
             VD+L+                               NRF+++Y  LS   N R+RVK 
Sbjct: 62  TAVDYLTYGQSDWQVGKVVSQTGFSRGRQQDFKTAAVDNRFEIIYQLLSMANNVRIRVKC 121

Query: 92  AVAEGKSV--PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFP 149
            + + + +   S+  ++  A+W EREV+DM+GI+F  HPDLRR+LTDYGF GHPLRKDFP
Sbjct: 122 KLKDAQIILVDSVSDLWSSANWAEREVYDMFGIYFNNHPDLRRVLTDYGFVGHPLRKDFP 181

Query: 150 VTGFVELHYDDKVKKVVYRPVELM 173
            TG+VE+ YD+ + +VVY PVE+ 
Sbjct: 182 QTGYVEMRYDENLGRVVYEPVEID 205


>gi|269926647|ref|YP_003323270.1| NADH (or F420H2) dehydrogenase, subunit C [Thermobaculum terrenum
           ATCC BAA-798]
 gi|269790307|gb|ACZ42448.1| NADH (or F420H2) dehydrogenase, subunit C [Thermobaculum terrenum
           ATCC BAA-798]
          Length = 179

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 61/147 (41%), Positives = 91/147 (61%), Gaps = 1/147 (0%)

Query: 8   LGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLS 67
           + + +     G++       GE ++ V    L+ +   LRD+P   F  ++D+  VD+L 
Sbjct: 22  IINTLQEIIPGAIEEVTVFRGETTIVVPVDRLIDIARTLRDNPAMQFNYLVDVTAVDWLG 81

Query: 68  RSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGH 127
           R+ RFDVVYH  S   N  +R+K+ V +G+ VPS+ G++  A+W ERE +DM+GI FEGH
Sbjct: 82  RTPRFDVVYHLYSIPLNHAIRMKVRVDDGQHVPSLTGLWELANWGERETYDMFGIVFEGH 141

Query: 128 PDLRRILTDYGFE-GHPLRKDFPVTGF 153
           PDLRRIL    ++ G PLRKDFP+ G+
Sbjct: 142 PDLRRILLPEDWQDGFPLRKDFPIGGY 168


>gi|169656769|ref|YP_001429367.2| NADH dehydrogenase I subunit C [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|218534354|sp|A7NEK8|NUOC_FRATF RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|164551837|gb|ABU62411.2| NADH dehydrogenase I subunit C [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 216

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 72/204 (35%), Positives = 107/204 (52%), Gaps = 34/204 (16%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCG-DLVSLCSFLRDDPHCCFVNIIDL 60
             K++D  + I    SG       S GE++  +    D+  +   L+      F  + D+
Sbjct: 4   STKLQDHFEKITKILSGFGVEGCISYGEITFSIRDQRDIHLILKKLK--KEYLFEQLTDV 61

Query: 61  CGVDFLSRS-----------------------------NRFDVVYHFLSPKYNRRLRVKI 91
             VD+L+                               NRF+++Y  LS   N R+RVK 
Sbjct: 62  TAVDYLTYGQSDWQVGKVVSQTGFSRGRQQDFKTAAVDNRFEIIYQLLSMANNVRIRVKC 121

Query: 92  AVAEGKSV--PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFP 149
            + + + +   S+  ++P A+W EREV+DM+GI+F  HPDLRR+LTDYGF GHPLRKDFP
Sbjct: 122 KLKDAQIILVDSVSDLWPSANWVEREVYDMFGIYFNNHPDLRRVLTDYGFVGHPLRKDFP 181

Query: 150 VTGFVELHYDDKVKKVVYRPVELM 173
            TG+VE+ YD+ + +VVY PVE+ 
Sbjct: 182 QTGYVEMRYDENLGRVVYEPVEID 205


>gi|285017794|ref|YP_003375505.1| NADH-quinone oxidoreductase chain c (nadh dehydrogenaseI chain c)
           (ndh-1, chain c) (nuo3) oxidoreductase [Xanthomonas
           albilineans GPE PC73]
 gi|283473012|emb|CBA15517.1| probable nadh-quinone oxidoreductase chain c (nadh dehydrogenaseI
           chain c) (ndh-1, chain c) (nuo3). oxidoreductase protein
           [Xanthomonas albilineans]
          Length = 227

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 68/194 (35%), Positives = 94/194 (48%), Gaps = 51/194 (26%)

Query: 27  VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRS----------------- 69
            GE++L+V      + C  LRD     F  + DLCGVD+L                    
Sbjct: 5   RGEVTLEVAADAWHATCLVLRD--EFGFEQLTDLCGVDYLGYGSDEWDTSDVSSHGFSRG 62

Query: 70  ------------------------------NRFDVVYHFLSPKYNRRLRVKIAVAEGKSV 99
                                          R+ V+   +S ++N+RLRV+         
Sbjct: 63  VEGKAVGRFAWGEFPSGEADGGAQPLPVPQQRYAVLAQLMSYRHNQRLRVRCYAPNEDLP 122

Query: 100 --PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELH 157
              S+  I+PGA+WFERE +D++G+ F GHPDLRRILTDYGF GHP RKDFP+ G VE+ 
Sbjct: 123 VVASVTDIWPGANWFEREAFDLFGVVFAGHPDLRRILTDYGFVGHPFRKDFPLIGNVEVR 182

Query: 158 YDDKVKKVVYRPVE 171
           YD+  ++V+Y PV 
Sbjct: 183 YDEAKQRVIYEPVT 196


>gi|312093106|ref|XP_003147569.1| NADH-ubiquinone oxidoreductase 30 kDa subunit [Loa loa]
 gi|307757266|gb|EFO16500.1| NADH-ubiquinone oxidoreductase 30 kDa subunit [Loa loa]
          Length = 243

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 65/152 (42%), Positives = 93/152 (61%), Gaps = 1/152 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNSVG-ELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
            K+   G Y        V+    + G EL L +    ++ + +FL+ +    F NI+ + 
Sbjct: 51  EKLAKFGRYCAECLPKFVQRVQFAAGDELELLIHPTGVLPVIAFLKGNHAAQFTNIVFIT 110

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
           G+D  SR  RF+V+Y  LS ++N R+RV+    E   + SI  I+ GA+W+EREV+DMYG
Sbjct: 111 GMDVPSRKFRFEVIYALLSIRFNARIRVRTYTDEIAPLESITSIFKGANWYEREVYDMYG 170

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTGF 153
           ++F  HPDLRRILTDYGFEGHP RKDFP+  +
Sbjct: 171 VWFNNHPDLRRILTDYGFEGHPFRKDFPLHIY 202


>gi|148657776|ref|YP_001277981.1| NADH (or F420H2) dehydrogenase subunit C [Roseiflexus sp. RS-1]
 gi|218534342|sp|A5UZH8|NUOC_ROSS1 RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|148569886|gb|ABQ92031.1| NADH (or F420H2) dehydrogenase, subunit C [Roseiflexus sp. RS-1]
          Length = 174

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 61/166 (36%), Positives = 93/166 (56%), Gaps = 2/166 (1%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M      + + +  +   ++  +    G+LS+ V    +V +  FLRDDP   F  + +L
Sbjct: 1   MALDNATVLERLRAALPDAILGSAEFRGDLSVYVRPERIVDVARFLRDDPELRFNFLENL 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPS-IVGIYPGADWFEREVWDM 119
           CGVD+L R  RF+VVYH +S     R+ +K+ V E       + G++PGA++ ERE +DM
Sbjct: 61  CGVDYLGREPRFEVVYHLISFTNRSRICLKVGVDEHNPSVPSLTGLWPGANYHERETFDM 120

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKV 165
           +GI F GHP L RIL    +EGHPLRKD P+ G  E+ +     ++
Sbjct: 121 FGIIFTGHPCLERILMPEDWEGHPLRKDVPL-GAEEVAFTFNQDRI 165


>gi|332184794|gb|AEE27048.1| NADH-ubiquinone oxidoreductase chain C [Francisella cf. novicida
           3523]
          Length = 214

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 69/205 (33%), Positives = 106/205 (51%), Gaps = 34/205 (16%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCG-DLVSLCSFLRDDPHCCFVNIID 59
           M  +++D  + I    SG       +  E+++ +    D+  +   L+      F  + D
Sbjct: 1   MSLRLQDHFNNITKILSGFGVEVCVAYDEINVIIKDQRDIHLILKKLK--KEYLFEQLTD 58

Query: 60  LCGVDFLSRS-----------------------------NRFDVVYHFLSPKYNRRLRVK 90
           +  VD+L+                               NRF+++Y  LS   N R+RVK
Sbjct: 59  VTAVDYLTYGQSDWQVGKVVSQTGFSRGRQQDFKTADVNNRFEIIYQLLSMANNVRVRVK 118

Query: 91  IAVAEGKSV--PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDF 148
             + + + +   S+  ++  A+W EREV+DM+GI+F  HPDLRR+LTDYGF GHPLRKDF
Sbjct: 119 CKLKDAQIILVDSVSDLWASANWAEREVYDMFGIYFNNHPDLRRVLTDYGFVGHPLRKDF 178

Query: 149 PVTGFVELHYDDKVKKVVYRPVELM 173
           P TG+VE+ YD  + +VVY PVE+ 
Sbjct: 179 PQTGYVEMRYDQNLGRVVYEPVEID 203


>gi|56791608|gb|AAW30342.1| NADH dehydrogenase subunit 9 [Amborella trichopoda]
          Length = 173

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 69/141 (48%), Positives = 94/141 (66%)

Query: 40  VSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV 99
             L  FL+   +      ID+CGVD  SR  RF+VV++ LS +YN R+RV+ +  E   +
Sbjct: 32  FKLLYFLKFHTYTRVQVSIDICGVDHPSRKRRFEVVHNLLSTRYNSRIRVQTSADEVTRI 91

Query: 100 PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYD 159
            S+V  +P A  +EREVWDM G+    HPDLRRI TD+GFEGHPLRKD P++G+VE+ +D
Sbjct: 92  SSVVSPFPSAGRWEREVWDMSGVSPINHPDLRRISTDHGFEGHPLRKDLPLSGYVEVRHD 151

Query: 160 DKVKKVVYRPVELMQEHRDYD 180
           D  K+VV  P+E+ QE R +D
Sbjct: 152 DPEKRVVSEPIEMTQEFRYFD 172


>gi|71275688|ref|ZP_00651973.1| NADH dehydrogenase [Xylella fastidiosa Dixon]
 gi|71897856|ref|ZP_00680082.1| NADH dehydrogenase (quinone) [Xylella fastidiosa Ann-1]
 gi|170729491|ref|YP_001774924.1| NADH dehydrogenase subunit C [Xylella fastidiosa M12]
 gi|71163579|gb|EAO13296.1| NADH dehydrogenase [Xylella fastidiosa Dixon]
 gi|71732411|gb|EAO34465.1| NADH dehydrogenase (quinone) [Xylella fastidiosa Ann-1]
 gi|167964284|gb|ACA11294.1| NADH dehydrogenase [Xylella fastidiosa M12]
          Length = 227

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 74/194 (38%), Positives = 99/194 (51%), Gaps = 51/194 (26%)

Query: 27  VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFD------------- 73
            GE++LDV   +  ++C  LRD     F  + DLCGVD+L   N                
Sbjct: 5   RGEITLDVPVVEWCAVCKGLRD--EFDFEQLSDLCGVDYLGYGNAEWDTTGVSAQGFSRG 62

Query: 74  ----------------------------------VVYHFLSPKYNRRLRVKIAVAEG--K 97
                                             V+ H +S ++NRRLRV+   +     
Sbjct: 63  VAGKAVGRFAWGEFPSAGTNDGTQPWDVPQERFAVLAHLISYRHNRRLRVRCFASNDALP 122

Query: 98  SVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELH 157
            V S+  ++PG +WFERE +D++GI FEGH DLRRILTDYGF GHP RKDFP+TG VE+ 
Sbjct: 123 IVASLTDVWPGVNWFEREAFDLFGIVFEGHLDLRRILTDYGFIGHPFRKDFPLTGNVEVR 182

Query: 158 YDDKVKKVVYRPVE 171
           YD++ K+VVY PV 
Sbjct: 183 YDEEKKRVVYVPVT 196


>gi|114777363|ref|ZP_01452360.1| NADH dehydrogenase I, C subunit [Mariprofundus ferrooxydans PV-1]
 gi|114552145|gb|EAU54647.1| NADH dehydrogenase I, C subunit [Mariprofundus ferrooxydans PV-1]
          Length = 210

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 70/168 (41%), Positives = 99/168 (58%), Gaps = 8/168 (4%)

Query: 12  IVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD------F 65
           +   F   V      +   S+ +    +   C +L+ +    F  ++D+CGVD      +
Sbjct: 30  LRKRFGDQVLDVEAGLDCPSVTLARECIAEACHYLKGEHS--FEQVMDICGVDRSDYRGW 87

Query: 66  LSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFE 125
            + + RF VVY  LS   N R+R+K+   E   V S+  ++P A+WFERE +DMYGI F 
Sbjct: 88  PADAPRFQVVYQLLSVSRNCRIRLKVGANERDLVDSVTEVWPTANWFEREAFDMYGIIFN 147

Query: 126 GHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELM 173
            HPDLRR+LTDYGFEG+PLRKDFPVTG VE+ +D+   + VYRP +L 
Sbjct: 148 HHPDLRRLLTDYGFEGYPLRKDFPVTGRVEMFFDEAQWRCVYRPNKLE 195


>gi|262216820|gb|ACY37790.1| NADH dehydrogenase subunit 9 [Phytophthora inundata]
          Length = 116

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 66/110 (60%), Positives = 88/110 (80%)

Query: 76  YHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILT 135
           Y+ LS ++N RL+VKI + E + V SI+ IY  A+W EREVWDM+GIFF  HPDLRRILT
Sbjct: 1   YNLLSIRFNSRLKVKITINELQPVDSIINIYKAANWCEREVWDMFGIFFSNHPDLRRILT 60

Query: 136 DYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPW 185
           DYGFEGHPLRKDFP++GF+E+ Y++  K+VVY P+ L Q++R ++F +PW
Sbjct: 61  DYGFEGHPLRKDFPLSGFLEVFYNELKKRVVYEPISLSQQYRLFEFNNPW 110


>gi|254876261|ref|ZP_05248971.1| NADH dehydrogenase I [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254842282|gb|EET20696.1| NADH dehydrogenase I [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 217

 Score =  151 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 70/204 (34%), Positives = 108/204 (52%), Gaps = 34/204 (16%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCG-DLVSLCSFLRDDPHCCFVNIIDL 60
             +++D  + +    +G       + GE+++ +    D+  +   L+      F  + D+
Sbjct: 4   SARLQDHFNNVEKILNGFGVECYVAYGEINISIKDQRDIHLVLKKLK--KEYHFKQLTDI 61

Query: 61  CGVDFLSRS-----------------------------NRFDVVYHFLSPKYNRRLRVKI 91
             VD+L+                               NRF+++Y  LS   N R+RVK 
Sbjct: 62  TAVDYLTYGQSDWQVGKVVSQTGFSRGRQQGFKTADVNNRFEIIYQLLSMANNVRVRVKC 121

Query: 92  AVAEGK--SVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFP 149
            + + +   V S+  ++P A+W EREV+DM+GI+F  HPDLRR+LTDYGF GHPLRKDFP
Sbjct: 122 KLKDAQIIMVDSVEDLWPSANWAEREVYDMFGIYFNNHPDLRRVLTDYGFVGHPLRKDFP 181

Query: 150 VTGFVELHYDDKVKKVVYRPVELM 173
            TG+VE+ YD+ + KVVY PVE+ 
Sbjct: 182 QTGYVEMRYDENLGKVVYEPVEID 205


>gi|62257927|gb|AAX77754.1| unknown protein [synthetic construct]
          Length = 251

 Score =  150 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 73/204 (35%), Positives = 107/204 (52%), Gaps = 34/204 (16%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCG-DLVSLCSFLRDDPHCCFVNIIDL 60
             K++D  D I    SG       S GE++  +    D+  +   L+      F  + D+
Sbjct: 30  STKLQDHFDKITKILSGFGVEGCISYGEITFSIRDQRDIHLILKKLK--KEYLFEQLTDV 87

Query: 61  CGVDFLSRS-----------------------------NRFDVVYHFLSPKYNRRLRVKI 91
             VD+L+                               NRF+++Y  LS   N R+RVK 
Sbjct: 88  TAVDYLTYGQSDWQVGKVVSQTGFSRGRQQDFKTAAVDNRFEIIYQLLSMANNVRIRVKC 147

Query: 92  AVAEGKSV--PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFP 149
            + + + +   S+  ++P A+W EREV+DM+GI+F  HPDLRR+LTDYGF GHPLRKDFP
Sbjct: 148 KLKDAQIILVDSVSDLWPSANWAEREVYDMFGIYFNNHPDLRRVLTDYGFVGHPLRKDFP 207

Query: 150 VTGFVELHYDDKVKKVVYRPVELM 173
            TG+VE+ YD+ + +VVY PVE+ 
Sbjct: 208 QTGYVEMRYDENLGRVVYEPVEID 231


>gi|262216835|gb|ACY37800.1| NADH dehydrogenase subunit 9 [Phytophthora infestans]
          Length = 116

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 64/111 (57%), Positives = 89/111 (80%)

Query: 76  YHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILT 135
           Y+ LS ++N RL++KI + E + + SI+ IY  A+W EREVWDM+GIFF  HPDLRRILT
Sbjct: 1   YNLLSIRFNSRLKIKITINELQPINSIIKIYRAANWCEREVWDMFGIFFLNHPDLRRILT 60

Query: 136 DYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWE 186
           DYGFEGHPLRKDFP++GF+E+ Y++  K+VVY P+ L Q++R ++F +PW+
Sbjct: 61  DYGFEGHPLRKDFPLSGFLEVFYNELKKRVVYEPINLSQQYRVFEFNNPWD 111


>gi|262216817|gb|ACY37788.1| NADH dehydrogenase subunit 9 [Phytophthora nicotianae var.
           parasitica]
          Length = 116

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 64/111 (57%), Positives = 89/111 (80%)

Query: 76  YHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILT 135
           Y+ LS ++N RL++KI + E + + SI+ IY  A+W EREVWDM+GIFF  HPDLRRILT
Sbjct: 1   YNLLSIRFNSRLKIKITINELQPIDSIIKIYKAANWCEREVWDMFGIFFLNHPDLRRILT 60

Query: 136 DYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWE 186
           DYGFEGHPLRKDFP++GF+E+ Y++  K+VVY P+ L Q++R ++F +PW+
Sbjct: 61  DYGFEGHPLRKDFPLSGFLEVFYNELKKRVVYEPINLSQQYRLFEFNNPWD 111


>gi|262216823|gb|ACY37792.1| NADH dehydrogenase subunit 9 [Phytophthora citrophthora]
          Length = 116

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 67/111 (60%), Positives = 89/111 (80%)

Query: 76  YHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILT 135
           Y+ LS ++N RL+VKI + E + V SI+ IY  A+W EREVWDM+GIFF  HPDLRRILT
Sbjct: 1   YNLLSIRFNSRLKVKITINELQPVDSIINIYKAANWCEREVWDMFGIFFINHPDLRRILT 60

Query: 136 DYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWE 186
           DYGFEGHPLRKDFP++GF+E+ Y+D  K+VVY P+ L Q++R ++F +PW+
Sbjct: 61  DYGFEGHPLRKDFPLSGFLEVFYNDLKKRVVYEPINLSQQYRLFEFNNPWD 111


>gi|262216832|gb|ACY37798.1| NADH dehydrogenase subunit 9 [Phytophthora humicola]
          Length = 113

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 66/111 (59%), Positives = 89/111 (80%)

Query: 76  YHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILT 135
           Y+ LS ++N RL+VKI + E + V SI+ IY  A+W EREVWDM+GIFF  HPDLRRILT
Sbjct: 1   YNLLSIRFNSRLKVKITINELQPVESIINIYKAANWCEREVWDMFGIFFSNHPDLRRILT 60

Query: 136 DYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWE 186
           DYGFEGHPLRKDFP++GF+E+ Y++  K+VVY P+ L Q++R ++F +PW+
Sbjct: 61  DYGFEGHPLRKDFPLSGFLEVFYNELKKRVVYEPINLSQQYRLFEFNNPWD 111


>gi|328925356|gb|AEB66297.1| NADH dehydrogenase subunit 9 [Silene subconica]
          Length = 150

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 72/150 (48%), Positives = 98/150 (65%)

Query: 17  SGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVY 76
              V+           D +      L  FL+   +  +  ++D CGVD+ SR  RF+VVY
Sbjct: 1   KKWVKRMXKEKDGXRFDTNTDFAFQLLCFLKLHXYTRYEVLVDXCGVDYPSRKLRFEVVY 60

Query: 77  HFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTD 136
           + LS ++N R+RV+ +  E   +PS+V ++P A+W EREVWDM+GI F  HPDLRRILTD
Sbjct: 61  NLLSTRFNSRIRVQSSADEVSRIPSVVSLFPSANWCEREVWDMFGISFINHPDLRRILTD 120

Query: 137 YGFEGHPLRKDFPVTGFVELHYDDKVKKVV 166
           YGFEGHPLRKDFP++G+VE+ YDD  K+VV
Sbjct: 121 YGFEGHPLRKDFPLSGYVEVRYDDPEKRVV 150


>gi|95928441|ref|ZP_01311189.1| NADH (or F420H2) dehydrogenase, subunit C [Desulfuromonas
           acetoxidans DSM 684]
 gi|95135712|gb|EAT17363.1| NADH (or F420H2) dehydrogenase, subunit C [Desulfuromonas
           acetoxidans DSM 684]
          Length = 159

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 62/154 (40%), Positives = 92/154 (59%), Gaps = 6/154 (3%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M +    +   +  +F+ SV       GE+++ V   D+V +C +L+++    F  + DL
Sbjct: 1   MSQA---VVAKLKGTFAASVLEVKEHRGEVTVTVKKEDIVDICRYLKEEAGYNF--LCDL 55

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVA-EGKSVPSIVGIYPGADWFEREVWDM 119
           CGVD+L ++ RF VVY+  +     RLRVK+ V  +   V ++ GI+  A+W ERE WD+
Sbjct: 56  CGVDYLGQTPRFMVVYNLYNITTKERLRVKVPVEEQDCCVDTVSGIWSTANWPERECWDL 115

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGF 153
            GI F GHPDLRRIL    +EGHPLRKD+P+ G 
Sbjct: 116 MGISFAGHPDLRRILMPADWEGHPLRKDYPLQGP 149


>gi|238062213|ref|ZP_04606922.1| NADH dehydrogenase subunit C [Micromonospora sp. ATCC 39149]
 gi|237884024|gb|EEP72852.1| NADH dehydrogenase subunit C [Micromonospora sp. ATCC 39149]
          Length = 243

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 61/158 (38%), Positives = 89/158 (56%), Gaps = 6/158 (3%)

Query: 6   EDLGDYIVNS---FSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
           +++ D +  +   F  ++   V   GEL+L V    +  +C  +RDD    F     + G
Sbjct: 72  DEVRDALEEAYPYFGDAIEKVVVDRGELTLHVRPERIAEVCQVMRDDLALRFELCSSVSG 131

Query: 63  VDFLSRSNR-FDVVYHFLSPKYNRRLRVKIAVAEGKS-VPSIVGIYPGADWFEREVWDMY 120
           VD+L    R   VVY   S  Y RR+R++ AV+     +PS+  +YP ADW ERE +DM+
Sbjct: 132 VDYLGADERRLHVVYQLTSMTYRRRVRLETAVSAEAPHLPSVTAVYPTADWQERETYDMF 191

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHY 158
           GI F+GHP+L RIL    +EGHP RKD+P+ G V + Y
Sbjct: 192 GIVFDGHPNLTRILMPDDWEGHPQRKDYPLGG-VPVEY 228


>gi|16263285|ref|NP_436078.1| NuoC2 NADH I chain C [Sinorhizobium meliloti 1021]
 gi|307304396|ref|ZP_07584147.1| NADH (or F420H2) dehydrogenase, subunit C [Sinorhizobium meliloti
           BL225C]
 gi|307318103|ref|ZP_07597539.1| NADH (or F420H2) dehydrogenase, subunit C [Sinorhizobium meliloti
           AK83]
 gi|7387953|sp|P56896|NUOC2_RHIME RecName: Full=NADH-quinone oxidoreductase subunit C 2; AltName:
           Full=NADH dehydrogenase I subunit C 2; AltName:
           Full=NDH-1 subunit C 2
 gi|5650746|emb|CAB51631.1| putative NADH-ubiquinone oxidoreductase subunit [Sinorhizobium
           meliloti]
 gi|14523962|gb|AAK65490.1| NuoC2 NADH:quinone oxidoreductase (chain C) [Sinorhizobium meliloti
           1021]
 gi|306896144|gb|EFN26894.1| NADH (or F420H2) dehydrogenase, subunit C [Sinorhizobium meliloti
           AK83]
 gi|306902598|gb|EFN33192.1| NADH (or F420H2) dehydrogenase, subunit C [Sinorhizobium meliloti
           BL225C]
          Length = 182

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 64/144 (44%), Positives = 86/144 (59%)

Query: 12  IVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNR 71
           I+ SF G+V     + G  +  V    +V  C FL++ P   F  + D+CGVD    + R
Sbjct: 12  IIGSFGGAVENLGAAHGIYAFAVPPEQIVEFCRFLKEHPALEFDFLSDICGVDHYPETPR 71

Query: 72  FDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLR 131
           F+ VYH  S K   R+R+K  + E   VP++ G++  A+W ERE WDMYGI FEGHPDLR
Sbjct: 72  FETVYHLYSLKNKWRVRIKCRLGEPPHVPTVTGVWRTANWHEREAWDMYGIRFEGHPDLR 131

Query: 132 RILTDYGFEGHPLRKDFPVTGFVE 155
           RI    GFEG P RKDFP+ G+ +
Sbjct: 132 RIYMWEGFEGFPQRKDFPLRGYKD 155


>gi|300122807|emb|CBK23822.2| unnamed protein product [Blastocystis hominis]
          Length = 196

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 61/157 (38%), Positives = 101/157 (64%)

Query: 7   DLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFL 66
           +    I+N     ++ ++ S  EL+  ++    +++ +FL+   +  F  + D+C VD+ 
Sbjct: 15  NYSKSILNMLPNYIQASIYSNRELTFIIEKQYNLTVLNFLKKYTNGQFKTMSDMCAVDYP 74

Query: 67  SRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEG 126
            +  RF+++Y  LS  +N R+++K  + E   + SI  +Y GA+W+ERE++D +GI+F+ 
Sbjct: 75  YKKYRFEIIYTLLSLVFNSRVKIKTYLNELDDIESITSLYSGANWWEREIYDFFGIYFKN 134

Query: 127 HPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVK 163
           + DLRRILTDYGF+GHPLRKDFP+ G+ EL YDD  K
Sbjct: 135 NKDLRRILTDYGFKGHPLRKDFPLLGYYELVYDDSEK 171


>gi|296040737|gb|ADG85336.1| NADH dehydrogenase subunit 9 [Silene vulgaris]
          Length = 144

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 73/144 (50%), Positives = 97/144 (67%)

Query: 20  VRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFL 79
           V+    S      D +   L  L  FL+   +  F  +ID+CGVD+ SR  RF+VVY+ L
Sbjct: 1   VKKIEKSEHGNRFDTNTDYLFQLLCFLKLHTYTRFQVLIDICGVDYPSRKLRFEVVYNLL 60

Query: 80  SPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGF 139
           S +YN R+RV+ +  E   + S+V ++P A W+EREVWDM+G+ F  HPDLRRILTDYGF
Sbjct: 61  STRYNSRIRVQTSADEVTRISSVVSLFPSAGWWEREVWDMFGVSFINHPDLRRILTDYGF 120

Query: 140 EGHPLRKDFPVTGFVELHYDDKVK 163
           EGHPLRKDFP++G+VE+ YDD  K
Sbjct: 121 EGHPLRKDFPLSGYVEVRYDDPEK 144


>gi|200004066|ref|YP_002221400.1| NADH dehydrogenase subunit 9 [Blastocystis sp. NandII]
 gi|187438964|gb|ACD10935.1| NADH dyhydrogenase subunit 9 [Blastocystis sp. NandII]
 gi|198385488|gb|ACH86081.1| NADH dehydrogenase subunit 9 [Blastocystis sp. NandII]
          Length = 196

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 64/187 (34%), Positives = 110/187 (58%), Gaps = 8/187 (4%)

Query: 1   MVRKI--------EDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHC 52
           M +++         +    I+N     ++ ++ S  EL+  ++      + +FL+   + 
Sbjct: 1   MSKQLYYNTVKLYINYSKSIMNMLPNYIQASIYSNRELTFIINKNYNKLVLNFLKKYTNG 60

Query: 53  CFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWF 112
            +  + D+C +D+  ++ RF+V+Y  LS  +N R+++K  + E  S+ SI  I+ GA+W+
Sbjct: 61  QYKTMSDMCAIDYPYKTYRFEVIYTLLSLVFNSRVKIKTYLTELDSIESITSIFSGANWW 120

Query: 113 EREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVEL 172
           ERE++D +GI+F  + DLRRILTDYGF+GHPLRKDFP+ G+ EL YDD  K +    +E 
Sbjct: 121 EREIYDFFGIYFNNNKDLRRILTDYGFKGHPLRKDFPLCGYYELIYDDVNKVIKKTNIEF 180

Query: 173 MQEHRDY 179
             + + Y
Sbjct: 181 SPKFKSY 187


>gi|73989394|ref|XP_853570.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein
           3, 30kDa (NADH-coenzyme Q reductase) [Canis familiaris]
          Length = 209

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 51/144 (35%), Positives = 81/144 (56%), Gaps = 1/144 (0%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNS-VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +++   G+Y+       V+        EL + +    ++ + +FLRD     F ++ DL 
Sbjct: 51  KQLSAFGEYVAEILPKYVQQVQVFCFNELEICIHPDGVIPVLTFLRDHTSAPFQSLADLT 110

Query: 62  GVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG 121
            VD  +  N F++VY+ LS ++N  + V+    E   +   V +Y  A+W+ RE+WD++G
Sbjct: 111 AVDIPTWQNHFEIVYNLLSLRFNSWICVRTYTDELTPIEFTVSVYKAANWYVREIWDLFG 170

Query: 122 IFFEGHPDLRRILTDYGFEGHPLR 145
           +FF  HPDLRR LTDYGFEGHP R
Sbjct: 171 VFFANHPDLRRTLTDYGFEGHPFR 194


>gi|190893215|ref|YP_001979757.1| NADH-ubiquinone oxidoreductase, chain C [Rhizobium etli CIAT 652]
 gi|218528027|sp|B3PY58|NUOC2_RHIE6 RecName: Full=NADH-quinone oxidoreductase subunit C 2; AltName:
           Full=NADH dehydrogenase I subunit C 2; AltName:
           Full=NDH-1 subunit C 2
 gi|190698494|gb|ACE92579.1| NADH-ubiquinone oxidoreductase protein, chain C [Rhizobium etli
           CIAT 652]
          Length = 187

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 59/144 (40%), Positives = 81/144 (56%)

Query: 12  IVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNR 71
           I+  F  ++     + G     V    +V  C FL++ P   F  + D+CGVD    + R
Sbjct: 12  IMERFGDTIEDLGTAHGIDVFAVPPERIVEFCRFLKEHPAMQFNFLSDICGVDHYPETPR 71

Query: 72  FDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLR 131
           F+ VYH  S     R+R+K  + +   VPS+ G++  A+W ERE WDMYGI F GHPDLR
Sbjct: 72  FEAVYHLYSLPNRWRVRIKCRLGDPPEVPSVTGVWRTANWHEREAWDMYGIRFAGHPDLR 131

Query: 132 RILTDYGFEGHPLRKDFPVTGFVE 155
           RI    GFEG P RKDFP+ G+ +
Sbjct: 132 RIYMWEGFEGFPQRKDFPLRGYKD 155


>gi|11466220|ref|NP_066543.1| NADH dehydrogenase subunit 9 [Naegleria gruberi]
 gi|10444255|gb|AAG17821.1|AF288092_46 NADH dehydrogenase subunit 9 [Naegleria gruberi]
          Length = 186

 Score =  148 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 69/179 (38%), Positives = 101/179 (56%)

Query: 7   DLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFL 66
           +L  Y+  +    +     +   L +       + +  FL  D +C F ++ID   VD+ 
Sbjct: 5   NLVSYLFLNIPKLIFSIRKNNNFLFIRSHKLYAIMISYFLYKDMNCQFKSLIDFTCVDYS 64

Query: 67  SRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEG 126
               RF+++YH +S  Y+ R+ +K  + E +S+ S+  IYP   W+EREVWD +G+FF  
Sbjct: 65  LNKKRFNLIYHIISIYYHFRVFLKFFIEELESMYSLCYIYPNISWYEREVWDFFGVFFLN 124

Query: 127 HPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPW 185
           + +LRRIL DYGF GHPLRKDFP+TGFVEL Y      VV + V L Q  R Y+  + W
Sbjct: 125 NVNLRRILLDYGFVGHPLRKDFPLTGFVELVYSIFYFSVVQKKVNLSQSFRKYETKTVW 183


>gi|159039973|ref|YP_001539226.1| NADH dehydrogenase subunit C [Salinispora arenicola CNS-205]
 gi|218534344|sp|A8M620|NUOC_SALAI RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|157918808|gb|ABW00236.1| NADH (or F420H2) dehydrogenase, subunit C [Salinispora arenicola
           CNS-205]
          Length = 245

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 61/158 (38%), Positives = 89/158 (56%), Gaps = 6/158 (3%)

Query: 6   EDLGDYIVNS---FSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
           +++ D +  +   F  ++   V   GEL+L +    +  +C  LRDD    F     + G
Sbjct: 74  DEVADALEEAYPAFGEAIEKVVVDRGELTLHIRPERIAEVCQVLRDDLALRFELCSSVSG 133

Query: 63  VDFLSRS-NRFDVVYHFLSPKYNRRLRVKIAVA-EGKSVPSIVGIYPGADWFEREVWDMY 120
           VD+L     R   VY   S  Y R++R++ AV+ E   +PS+ G+YP ADW ERE +DM+
Sbjct: 134 VDYLGADARRLHAVYQLTSMTYRRQIRLEAAVSVEDPHLPSVTGVYPTADWQEREAYDMF 193

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHY 158
           GI F+GHP L RIL    +EGHP RKD+P+ G V + Y
Sbjct: 194 GIVFDGHPGLTRILMPDDWEGHPQRKDYPLGG-VPVEY 230


>gi|262216802|gb|ACY37778.1| NADH dehydrogenase subunit 9 [Phytophthora alni subsp. alni]
 gi|262216805|gb|ACY37780.1| NADH dehydrogenase subunit 9 [Phytophthora alni subsp. multiformis]
 gi|262216808|gb|ACY37782.1| NADH dehydrogenase subunit 9 [Phytophthora cambivora]
          Length = 116

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 66/111 (59%), Positives = 89/111 (80%)

Query: 76  YHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILT 135
           Y+ LS ++N RL++KI + E +SV SI+ IY  A+W EREVWDM+GIFF  HPDLRRILT
Sbjct: 1   YNLLSIRFNSRLKIKITINELQSVDSIITIYKAANWCEREVWDMFGIFFFNHPDLRRILT 60

Query: 136 DYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWE 186
           DYGFEGHPLRKDFP+ GF+E+ Y++  K+VVY P+ L Q++R ++F +PW+
Sbjct: 61  DYGFEGHPLRKDFPLRGFLEVFYNELKKRVVYEPINLSQQYRLFEFNNPWD 111


>gi|145596574|ref|YP_001160871.1| NADH dehydrogenase subunit C [Salinispora tropica CNB-440]
 gi|226737324|sp|A4XC36|NUOC_SALTO RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|145305911|gb|ABP56493.1| NADH (or F420H2) dehydrogenase, subunit C [Salinispora tropica
           CNB-440]
          Length = 245

 Score =  147 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 58/158 (36%), Positives = 88/158 (55%), Gaps = 6/158 (3%)

Query: 6   EDLGDYIVNS---FSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
           +++ D +  +   F  ++   V   GEL+L +    +  +C  +RDD    F     + G
Sbjct: 74  DEVADALEEAYPAFGEAIEKVVVDRGELTLHIRPERIAEVCQVMRDDLSLRFELCSSVSG 133

Query: 63  VDFLSRSNR-FDVVYHFLSPKYNRRLRVKIAVA-EGKSVPSIVGIYPGADWFEREVWDMY 120
           VD+L        VVY   S  Y R++R++ AV+ E   +PS+  +YP ADW ERE +DM+
Sbjct: 134 VDYLGADACRLHVVYQLTSMTYRRQVRLEAAVSAENPHLPSVTSVYPTADWQERETYDMF 193

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHY 158
           G+ F+GHP L RIL    +EGHP RKD+P+ G V + Y
Sbjct: 194 GVIFDGHPGLTRILMPDDWEGHPQRKDYPLGG-VPVEY 230


>gi|311744394|ref|ZP_07718196.1| NADH-quinone oxidoreductase subunit C [Aeromicrobium marinum DSM
           15272]
 gi|311312360|gb|EFQ82275.1| NADH-quinone oxidoreductase subunit C [Aeromicrobium marinum DSM
           15272]
          Length = 240

 Score =  147 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 57/154 (37%), Positives = 81/154 (52%), Gaps = 7/154 (4%)

Query: 6   EDLGDYIVNSFS-----GSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           +++ D +    +     G+V   V   GE++  V    L+ + + LR+DP   F     L
Sbjct: 67  DEVADLLEARLTEAGHTGAVEKVVVDRGEITFHVTRQALLEVVTHLRNDPGLRFEFCSSL 126

Query: 61  CGVDFL-SRSNRFDVVYHFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWD 118
             V +         VV H LS  + RR+RV+    +    VPS+V IYP ADW ERE WD
Sbjct: 127 SAVHYPAETGRELHVVLHLLSMTHRRRIRVEATAPDTDPHVPSVVSIYPTADWHEREAWD 186

Query: 119 MYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTG 152
           M+G+ F+GHP L RIL    + GHP RKD+P+ G
Sbjct: 187 MFGLVFDGHPALTRILMPDDWPGHPQRKDYPLGG 220


>gi|262216847|gb|ACY37808.1| NADH dehydrogenase subunit 9 [Bremia lactucae]
 gi|262216850|gb|ACY37810.1| NADH dehydrogenase subunit 9 [Bremia lactucae]
 gi|262216853|gb|ACY37812.1| NADH dehydrogenase subunit 9 [Bremia lactucae]
          Length = 113

 Score =  147 bits (371), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 65/110 (59%), Positives = 91/110 (82%)

Query: 76  YHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILT 135
           Y+ LS ++N RL++KI++ E + + SI+GIY  A+W EREVWDM+GIFF  HPDLRRILT
Sbjct: 1   YNLLSIRFNSRLKIKISLNELQPIDSIIGIYKSANWSEREVWDMFGIFFSNHPDLRRILT 60

Query: 136 DYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPW 185
           DYGFEGHPLRKDFP++GF+E+ Y++  K+VVY+P+ L Q++R ++F +PW
Sbjct: 61  DYGFEGHPLRKDFPLSGFLEIFYNELKKRVVYKPINLSQQYRLFEFNNPW 110


>gi|296040735|gb|ADG85335.1| NADH dehydrogenase subunit 9 [Silene paradoxa]
          Length = 144

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/132 (53%), Positives = 94/132 (71%)

Query: 32  LDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKI 91
            D +   L  L  FL+   +  F  +ID+CGVD+ SR  RF+VVY+ LS +YN R+RV+ 
Sbjct: 13  FDTNTDYLFQLLCFLKLHTYTRFQVLIDICGVDYPSRKLRFEVVYNLLSTRYNSRIRVQT 72

Query: 92  AVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVT 151
           +  E   + S+V ++P A W+EREVWDM+G+ F  HPDLRRILTDYGFEGHPLRKDFP++
Sbjct: 73  SADEVTRISSVVSLFPSAGWWEREVWDMFGLSFINHPDLRRILTDYGFEGHPLRKDFPLS 132

Query: 152 GFVELHYDDKVK 163
           G+VE+ YDD  K
Sbjct: 133 GYVEVRYDDPEK 144


>gi|86359328|ref|YP_471220.1| NADH-ubiquinone oxidoreductase chain C protein [Rhizobium etli CFN
           42]
 gi|86283430|gb|ABC92493.1| NADH-ubiquinone oxidoreductase chain C protein [Rhizobium etli CFN
           42]
          Length = 187

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 59/142 (41%), Positives = 80/142 (56%)

Query: 12  IVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNR 71
           I+  F  ++     + G     V    +V  C FL++ P   F  + D+CGVD    + R
Sbjct: 12  IMERFGETIEDLGTAHGIDVFAVPPERIVEFCRFLKEHPALQFDFLSDVCGVDHYPETPR 71

Query: 72  FDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLR 131
           F+ VYH  S     R+R+K  + +   VPS+ G++  A+W ERE WDMYGI F GHPDLR
Sbjct: 72  FEAVYHLYSLPNRWRVRIKCRLGDPPEVPSVTGVWRTANWHEREAWDMYGIRFAGHPDLR 131

Query: 132 RILTDYGFEGHPLRKDFPVTGF 153
           RI    GFEG P RKDFP+ G+
Sbjct: 132 RIYMWEGFEGFPQRKDFPLRGY 153


>gi|156741307|ref|YP_001431436.1| NADH (or F420H2) dehydrogenase subunit C [Roseiflexus castenholzii
           DSM 13941]
 gi|218534318|sp|A7NIW0|NUOC_ROSCS RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|156232635|gb|ABU57418.1| NADH (or F420H2) dehydrogenase, subunit C [Roseiflexus castenholzii
           DSM 13941]
          Length = 174

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 60/166 (36%), Positives = 92/166 (55%), Gaps = 2/166 (1%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M      +   +  +   ++  +    G+LS+ V    +V +  FLRDDP   +  + +L
Sbjct: 1   MALDNPTVLARLQAALPDALLGSSEFRGDLSVHVRPERIVDVARFLRDDPELRYHFLENL 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPS-IVGIYPGADWFEREVWDM 119
           CGVD+L R  RF+VVYH LS     R+ +K+ V+E       +  ++PGA++ ERE +DM
Sbjct: 61  CGVDYLGREPRFEVVYHLLSFANRHRICLKVGVSERNPSVPSLTELWPGANYHERETFDM 120

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKV 165
           +GI F GHP L RIL    +EGHPLRKD P+ G  E+ +     ++
Sbjct: 121 FGIVFTGHPCLDRILMPEDWEGHPLRKDVPL-GAEEVAFTFNQDRI 165


>gi|284034167|ref|YP_003384098.1| NADH (or F420H2) dehydrogenase subunit C [Kribbella flavida DSM
           17836]
 gi|283813460|gb|ADB35299.1| NADH (or F420H2) dehydrogenase, subunit C [Kribbella flavida DSM
           17836]
          Length = 235

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 56/152 (36%), Positives = 81/152 (53%), Gaps = 4/152 (2%)

Query: 10  DYIVNSFSG-SVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFL-S 67
           + +       ++   V   GEL+L V    LV +   LRDD    F     + GV +   
Sbjct: 70  ERLEALVGDGAIEKVVVDRGELTLHVVPERLVEVAQHLRDDEALRFEFCSGVNGVHYPNE 129

Query: 68  RSNRFDVVYHFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMYGIFFEG 126
                  VYH LS  +NRR+R++++V +    +PSIV +YP  DW ERE WD +GI F+G
Sbjct: 130 TGRELHAVYHLLSITHNRRIRLEVSVPDADPHIPSIVSVYPANDWHERETWDFFGIVFDG 189

Query: 127 HPDLRRILTDYGFEGHPLRKDFPVTGFVELHY 158
           HP L RI     + GHP RKD+P+ G +++ Y
Sbjct: 190 HPALTRIQMPDDWPGHPQRKDYPLGG-IDVEY 220


>gi|271962157|ref|YP_003336353.1| NADH:ubiquinone oxidoreductase 27 kD subunit-like protein
           [Streptosporangium roseum DSM 43021]
 gi|270505332|gb|ACZ83610.1| NADH:ubiquinone oxidoreductase 27 kD subunit- like protein
           [Streptosporangium roseum DSM 43021]
          Length = 225

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 54/155 (34%), Positives = 79/155 (50%), Gaps = 3/155 (1%)

Query: 6   EDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDF 65
           ++L   +      +V   V   GEL+  V    L+ +   LRDD    F   + + GV +
Sbjct: 57  DELERALGGDLGDAVERVVVDRGELTFHVKRERLLEVARTLRDDAALRFELSLGVSGVHY 116

Query: 66  LS-RSNRFDVVYHFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMYGIF 123
                     V H  S  +NRRLR++++  +    +PS V +YP  DW ERE WD +GI 
Sbjct: 117 PHLEGEELRAVIHLCSITHNRRLRLEVSCPDADPHIPSTVSVYPTHDWHERETWDFFGIV 176

Query: 124 FEGHPDLRRILTDYGFEGHPLRKDFPVTG-FVELH 157
           F+GHP L RI+    ++GHP RKD+P+ G  VE  
Sbjct: 177 FDGHPALTRIMMPDDWDGHPQRKDYPLGGIPVEYR 211


>gi|91203916|emb|CAJ71569.1| strongly similar to to proton-translocating NADH dehydrogenase I
           chain C (NuoC) [Candidatus Kuenenia stuttgartiensis]
          Length = 166

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 50/148 (33%), Positives = 84/148 (56%), Gaps = 1/148 (0%)

Query: 6   EDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDF 65
           + +   + + F  ++    +  GEL+  +    ++ +  F + +       + D+CGVD 
Sbjct: 4   DSIITLVKSHFPEAITDCYDFRGELTFVIKKEHIMQVAEFFKKNEELECDYLSDVCGVDK 63

Query: 66  LSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKS-VPSIVGIYPGADWFEREVWDMYGIFF 124
           +  +  F+VVYH  S +   R+R+K+ V      + ++  I+  A+W ERE +DM+GI F
Sbjct: 64  IETNGVFEVVYHLYSMQKKHRVRLKVPVPSDNPTISTVTHIWKTANWHERETYDMFGIQF 123

Query: 125 EGHPDLRRILTDYGFEGHPLRKDFPVTG 152
           +GHPDLR+IL    FEGHPLRKD+P+ G
Sbjct: 124 QGHPDLRKILMPEDFEGHPLRKDYPIDG 151


>gi|330465204|ref|YP_004402947.1| NADH dehydrogenase subunit C [Verrucosispora maris AB-18-032]
 gi|328808175|gb|AEB42347.1| NADH dehydrogenase subunit C [Verrucosispora maris AB-18-032]
          Length = 243

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 60/158 (37%), Positives = 91/158 (57%), Gaps = 6/158 (3%)

Query: 6   EDLGDYIVNS---FSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
           +++ D +  +   F  ++   V   GEL+L +    +  +C  +RDDP   F     + G
Sbjct: 72  DEVRDALEEAYPAFGEAIEHVVVDRGELTLHIRPERIAEVCQVMRDDPALRFELCSSVSG 131

Query: 63  VDFLSRS-NRFDVVYHFLSPKYNRRLRVKIAVAEGKS-VPSIVGIYPGADWFEREVWDMY 120
           VD+L     R  VVY   S  Y RR+R+++AV+  +  +PS+  +YP ADW ERE +DM+
Sbjct: 132 VDYLGADARRLHVVYQLTSMTYRRRVRLEVAVSVEEPHLPSVTAVYPTADWQEREAYDMF 191

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHY 158
           G+ F+GHP L RIL    +EGHP RKD+P+ G V + Y
Sbjct: 192 GVIFDGHPALTRILMPDDWEGHPQRKDYPLGG-VPVEY 228


>gi|262216811|gb|ACY37784.1| NADH dehydrogenase subunit 9 [Phytophthora rubi]
          Length = 116

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 65/111 (58%), Positives = 89/111 (80%)

Query: 76  YHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILT 135
           Y+ LS ++N RL++KI + E +SV SI+ IY  A+W EREVWDM+GIFF  HPDLRRILT
Sbjct: 1   YNLLSIRFNSRLKIKITINELQSVDSIITIYKAANWCEREVWDMFGIFFFNHPDLRRILT 60

Query: 136 DYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWE 186
           DYGFEGHPLRKDFP+ GF+++ Y++  K+VVY P+ L Q++R ++F +PW+
Sbjct: 61  DYGFEGHPLRKDFPLRGFLKVFYNELKKRVVYEPINLSQQYRLFEFNNPWD 111


>gi|296040733|gb|ADG85334.1| NADH dehydrogenase subunit 9 [Silene conica]
          Length = 144

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 69/144 (47%), Positives = 97/144 (67%)

Query: 20  VRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFL 79
           V+           D +   +  L  FL+   +  +  ++D+CGVD+ SR  RF+VVY+ L
Sbjct: 1   VKRMEKEKDGNRFDTNTDFIFQLLCFLKLHSYTRYEVLVDICGVDYPSRKLRFEVVYNLL 60

Query: 80  SPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGF 139
           S ++N R+R++ +  E   +PS+V ++P A+W EREVWDM+GI F  HPDLRRILTDYGF
Sbjct: 61  STRFNSRIRIQSSADEVSRIPSVVSLFPSANWCEREVWDMFGISFINHPDLRRILTDYGF 120

Query: 140 EGHPLRKDFPVTGFVELHYDDKVK 163
           EGHPLRKDFP++G+VE+ YDD  K
Sbjct: 121 EGHPLRKDFPLSGYVEVRYDDPEK 144


>gi|296268275|ref|YP_003650907.1| NADH (or F420H2) dehydrogenase subunit C [Thermobispora bispora DSM
           43833]
 gi|296091062|gb|ADG87014.1| NADH (or F420H2) dehydrogenase, subunit C [Thermobispora bispora
           DSM 43833]
          Length = 229

 Score =  145 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 54/155 (34%), Positives = 81/155 (52%), Gaps = 3/155 (1%)

Query: 6   EDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDF 65
           +++ D +      ++   V   GE++  V    LV +   LRDDP   F   + + GV +
Sbjct: 61  DEVADALEALCGDAIERVVVDRGEITFHVRRERLVEVMRHLRDDPRLRFELSLGVSGVHY 120

Query: 66  LSR-SNRFDVVYHFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMYGIF 123
                     VYH  S  +NRR+RV+++  +    +PS V +YP  +W ERE +D +GI 
Sbjct: 121 PDDAGAELHAVYHLCSITHNRRIRVEVSCPDSDPHIPSTVSVYPTHNWHERETYDFFGII 180

Query: 124 FEGHPDLRRILTDYGFEGHPLRKDFPVTG-FVELH 157
           F+GHP L RI     +EGHP RKD+P+ G  VE  
Sbjct: 181 FDGHPALTRIEMPDDWEGHPQRKDYPLGGIPVEYR 215


>gi|298246352|ref|ZP_06970158.1| NADH (or F420H2) dehydrogenase, subunit C [Ktedonobacter racemifer
           DSM 44963]
 gi|297553833|gb|EFH87698.1| NADH (or F420H2) dehydrogenase, subunit C [Ktedonobacter racemifer
           DSM 44963]
          Length = 212

 Score =  145 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 62/200 (31%), Positives = 100/200 (50%), Gaps = 20/200 (10%)

Query: 10  DYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRS 69
           D +   F   V   V    E ++ +D G LV +C FL+      +  +  +  VD+  R+
Sbjct: 10  DVVREKFPQGVLETVEHRDEQTIILDPGSLVEVCQFLK--AQLQYSFLETVTAVDWPERT 67

Query: 70  NRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPS----IVGIYPGADWFEREVWDMYGIFFE 125
            RFDVVY  LS ++   +R+K+ V + +        I  ++ GA+W+EREV+D++GI F 
Sbjct: 68  PRFDVVYQLLSIEHQCFIRLKVRVGQRREAHPEVPSITSVWAGANWYEREVYDLFGITFA 127

Query: 126 GHPDLRRILTDYGFEGHPLRKDFPVTGFV--------ELHYDDKVKKVVYRPVEL-MQEH 176
           GHPDLRRI+    +  HPLRKD+P++GF         ++ Y+       Y    L   E 
Sbjct: 128 GHPDLRRIMMPEDWTTHPLRKDYPISGFELPEPHWGGQVPYNVDPGVGDYYQQSLRSSEG 187

Query: 177 RDYDFLSPWEGVNSLFAKED 196
           R ++     EG   +   ++
Sbjct: 188 RQFN-----EGRAQINPGQE 202


>gi|84494928|ref|ZP_00994047.1| NADH dehydrogenase subunit C [Janibacter sp. HTCC2649]
 gi|84384421|gb|EAQ00301.1| NADH dehydrogenase subunit C [Janibacter sp. HTCC2649]
          Length = 251

 Score =  145 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 59/157 (37%), Positives = 80/157 (50%), Gaps = 10/157 (6%)

Query: 6   EDLGDYIVNSFSG--------SVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNI 57
           ++L   + ++           +V   V   GEL+L V    L ++   LRDDP   F   
Sbjct: 75  DELTGTLESALGKSGDTAYAKAVERVVVDRGELTLHVAREALPTVARALRDDPALRFEIC 134

Query: 58  IDLCGVDFL-SRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPS-IVGIYPGADWFERE 115
             + GV F          VYH LS  +NRR+R+++   +  +    IV  YP ADW ERE
Sbjct: 135 TGVSGVHFPNEIGRELHAVYHLLSITHNRRVRLEVTAPDDDARIPSIVETYPAADWHERE 194

Query: 116 VWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTG 152
            WDM+GI FEGHP L RIL    + GHP RKD+P+ G
Sbjct: 195 TWDMFGIVFEGHPALTRILMPDDWPGHPQRKDYPLGG 231


>gi|269836327|ref|YP_003318555.1| NADH (or F420H2) dehydrogenase, subunit C [Sphaerobacter
           thermophilus DSM 20745]
 gi|269785590|gb|ACZ37733.1| NADH (or F420H2) dehydrogenase, subunit C [Sphaerobacter
           thermophilus DSM 20745]
          Length = 202

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 60/147 (40%), Positives = 84/147 (57%), Gaps = 3/147 (2%)

Query: 12  IVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLS--RS 69
           +   F  +   A +   E+++ V+      +  FLRD P   +  + D   VD L     
Sbjct: 36  VREQFPDAYISAYSFRDEMTIRVERPRFRDVIQFLRDHPDLQYTMLSDETAVDMLRLRPD 95

Query: 70  NRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPD 129
            RFDV+    S +   RLRVK  V +G+ VPS+V ++  A W EREV+DM+GI FEGHPD
Sbjct: 96  PRFDVLAQLYSIRRRWRLRVKCGVNDGEVVPSLVPVFAAAGWLEREVYDMFGIVFEGHPD 155

Query: 130 LRRILTDYGFE-GHPLRKDFPVTGFVE 155
           LRRIL    ++ GHPLRKD+P+ G+ E
Sbjct: 156 LRRILLPEDWDEGHPLRKDYPLRGYRE 182


>gi|150375772|ref|YP_001312368.1| NADH (or F420H2) dehydrogenase subunit C [Sinorhizobium medicae
           WSM419]
 gi|150030319|gb|ABR62435.1| NADH (or F420H2) dehydrogenase, subunit C [Sinorhizobium medicae
           WSM419]
          Length = 182

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 63/144 (43%), Positives = 84/144 (58%)

Query: 12  IVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNR 71
           I+ SF G+V     + G  +  V    +V  C FL++ P   F  + D+CGVD      R
Sbjct: 12  IIGSFVGAVEGLGAAHGIHAFAVPPEQIVEFCRFLKEHPALQFSFLSDICGVDHYPDLPR 71

Query: 72  FDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLR 131
           F+ VYH  S     R+R+K  + +   VPS+ G++  A+W ERE WDMYGI FEGHPDLR
Sbjct: 72  FETVYHLYSLNNKWRVRIKCRLGDPPHVPSVTGVWRTANWHEREAWDMYGIRFEGHPDLR 131

Query: 132 RILTDYGFEGHPLRKDFPVTGFVE 155
           RI    GFEG P RKDFP+ G+ +
Sbjct: 132 RIYMWEGFEGFPQRKDFPLRGYKD 155


>gi|317123847|ref|YP_004097959.1| NADH dehydrogenase subunit C [Intrasporangium calvum DSM 43043]
 gi|315587935|gb|ADU47232.1| NADH dehydrogenase subunit C [Intrasporangium calvum DSM 43043]
          Length = 273

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 61/161 (37%), Positives = 89/161 (55%), Gaps = 10/161 (6%)

Query: 13  VNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSR-SNR 71
             SF  +V   V   GE++++V    LV++   LRDDP   F     + GV +  R    
Sbjct: 111 SASFGEAVAAVVIDRGEMTINVHREHLVAVARALRDDPALRFEICTGVSGVHYPDRVGEE 170

Query: 72  FDVVYHFLSPKY-NRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPD 129
              VYHFLS  + +RR+RV+++  E  + +PSIV +YP  DW ERE WDM+GI F+GHP 
Sbjct: 171 LHAVYHFLSITHGSRRIRVEVSCPEEDRHIPSIVEVYPANDWHERETWDMFGIEFDGHPA 230

Query: 130 LRRILTDYGFEGHPLRKDFPVTGFVELHYD------DKVKK 164
           L R+L    + GHP RKD+P+ G + + Y          ++
Sbjct: 231 LTRVLMPDDWPGHPQRKDYPLGG-IPVEYKGATVPPPDQRR 270


>gi|331699310|ref|YP_004335549.1| NAD(P)H-quinone oxidoreductase subunit J [Pseudonocardia
           dioxanivorans CB1190]
 gi|326953999|gb|AEA27696.1| NAD(P)H-quinone oxidoreductase subunit J [Pseudonocardia
           dioxanivorans CB1190]
          Length = 291

 Score =  144 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 58/154 (37%), Positives = 87/154 (56%), Gaps = 7/154 (4%)

Query: 6   EDLGDYIVNSFS-GSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD 64
           +DL   +    + G+++      GE++  +    ++ +C  LRDDP   +     +  VD
Sbjct: 118 DDLVAALDERGTRGAIQQVTIDRGEITFYIAAERILEVCRTLRDDPSLRYELCSAVSAVD 177

Query: 65  FL-SRSNRFDVVYHFLSPKYNRRLRVKIAVA-----EGKSVPSIVGIYPGADWFEREVWD 118
           +      R  VVYH LS  Y RR+R+++A+      E   +PS+V +YP ADW ERE WD
Sbjct: 178 YGVDVPQRLHVVYHLLSMTYRRRIRLEVALDWAGGAENPHLPSVVEVYPTADWHERETWD 237

Query: 119 MYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTG 152
           M+GI F+GHP L RIL    ++GHP RKD+P+ G
Sbjct: 238 MFGIVFDGHPALTRILMPDDWDGHPQRKDYPLGG 271


>gi|283795064|ref|YP_003359480.1| NADH dehydrogenase subunit 9 [Synedra acus]
 gi|261279720|gb|ACX62028.1| NADH dehydrogenase subunit 9 [Synedra acus]
          Length = 209

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 64/153 (41%), Positives = 95/153 (62%), Gaps = 2/153 (1%)

Query: 30  LSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGV-DFLSRSNRFDVVYHFLSPKYNRRLR 88
           + + +D   L S   FL+    C +  + DL GV +       +DV+Y  LS ++N RLR
Sbjct: 46  ICVSLDKTYLRSYLFFLKYHVLCQYDLLTDLTGVSNVSQEDKPYDVIYELLSIRFNNRLR 105

Query: 89  VKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDF 148
           VK+       V ++  IY  A+W E E+WDMYGI+ E H  L R+LTDYGFEGHPLRKDF
Sbjct: 106 VKVQAINNS-VSTVSDIYLSANWSECELWDMYGIYPENHDRLIRLLTDYGFEGHPLRKDF 164

Query: 149 PVTGFVELHYDDKVKKVVYRPVELMQEHRDYDF 181
           P++G+ ++ Y++  K+V+   +EL QE+R +D+
Sbjct: 165 PLSGYYDVRYNEFKKRVIIDKLELGQEYRIFDY 197


>gi|218460105|ref|ZP_03500196.1| NADH-ubiquinone oxidoreductase chain C protein [Rhizobium etli Kim
           5]
          Length = 178

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 61/142 (42%), Positives = 81/142 (57%)

Query: 12  IVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNR 71
           I+  F  ++     + G  +  V    +V  C FL++ P   F  + D+CGVD      R
Sbjct: 12  IMERFGETIEDLGTAHGIEAFAVPPERIVEFCRFLKEHPALQFNFLSDVCGVDHYPEMPR 71

Query: 72  FDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLR 131
           F+ VYH  S    RR+R+K  + +   VPS+ G++  A+W ERE WDMYGI F GHPDLR
Sbjct: 72  FEAVYHLYSLPNRRRVRIKCRLGDPPEVPSVTGVWRTANWHEREAWDMYGIRFTGHPDLR 131

Query: 132 RILTDYGFEGHPLRKDFPVTGF 153
           RI    GFEG P RKDFP+ GF
Sbjct: 132 RIYMWEGFEGFPQRKDFPLRGF 153


>gi|221633755|ref|YP_002522981.1| NADH-quinone oxidoreductase subunit C [Thermomicrobium roseum DSM
           5159]
 gi|221156590|gb|ACM05717.1| nadh-quinone oxidoreductase chain c [Thermomicrobium roseum DSM
           5159]
          Length = 204

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 62/146 (42%), Positives = 86/146 (58%), Gaps = 3/146 (2%)

Query: 11  YIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD--FLSR 68
            +   F  +   A     E+++ V    L  +  FLR  P   + ++ D+  VD  +L  
Sbjct: 35  LVRERFPDAFEEATVFRDEMTIRVARPALRDVVDFLRLHPELRYNHLTDITAVDLLYLRE 94

Query: 69  SNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHP 128
             RFDVV H  S    +RLRVK  V +G+ VPS+V I+ GA+W ERE +DM+GI FEGHP
Sbjct: 95  RPRFDVVVHLYSIPRRQRLRVKCGVDDGEMVPSLVPIFAGANWLERECYDMFGIVFEGHP 154

Query: 129 DLRRILTDYGFE-GHPLRKDFPVTGF 153
           DLRRIL    ++ GHPLRKD+P+ G+
Sbjct: 155 DLRRILLPEDWDEGHPLRKDYPLRGY 180


>gi|262216844|gb|ACY37806.1| NADH dehydrogenase subunit 9 [Plasmopara halstedii]
          Length = 114

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 63/111 (56%), Positives = 87/111 (78%)

Query: 76  YHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILT 135
           Y+ LS ++N RL++KI + E + V SI+ IY  A+W EREVWDM+GIFF  H DLRRILT
Sbjct: 1   YNLLSIRFNSRLKIKIKINELQPVNSIIEIYKSANWCEREVWDMFGIFFSNHSDLRRILT 60

Query: 136 DYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWE 186
           DYGFEGHPLRKDFP++GF+E+ Y++  K+VVY  + L Q++R ++F +PW+
Sbjct: 61  DYGFEGHPLRKDFPLSGFLEVFYNELKKRVVYESINLSQQYRLFEFNNPWD 111


>gi|315501188|ref|YP_004080075.1| NADH (or f420h2) dehydrogenase, subunit c [Micromonospora sp. L5]
 gi|315407807|gb|ADU05924.1| NADH (or F420H2) dehydrogenase, subunit C [Micromonospora sp. L5]
          Length = 243

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 61/158 (38%), Positives = 92/158 (58%), Gaps = 6/158 (3%)

Query: 6   EDLGDYIVNS---FSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
           +++ D +  +   F  ++   V   GEL+L V    +  +C  +RDD    F  +  + G
Sbjct: 72  DEVRDALEEAYPDFGDAIEKVVVDRGELTLHVRPERIAEVCQVMRDDLALRFELLSSVSG 131

Query: 63  VDFLS-RSNRFDVVYHFLSPKYNRRLRVKIAVAEGKS-VPSIVGIYPGADWFEREVWDMY 120
           VD+L  +  R  VVYH  S  Y R +R+++AV+  +  VPS+  +YP ADW ERE +DM+
Sbjct: 132 VDYLGAQERRLHVVYHLTSMTYRRSVRLEVAVSVEEPHVPSVTAVYPTADWQERETYDMF 191

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHY 158
           G+ F+GHP L RIL    +EGHP RKD+P+ G V + Y
Sbjct: 192 GVVFDGHPALTRILMPDDWEGHPQRKDYPLGG-VPVEY 228


>gi|262216838|gb|ACY37802.1| NADH dehydrogenase subunit 9 [Plasmopara halstedii]
 gi|262216841|gb|ACY37804.1| NADH dehydrogenase subunit 9 [Plasmopara halstedii]
          Length = 113

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 63/111 (56%), Positives = 87/111 (78%)

Query: 76  YHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILT 135
           Y+ LS ++N RL++KI + E + V SI+ IY  A+W EREVWDM+GIFF  H DLRRILT
Sbjct: 1   YNLLSIRFNSRLKIKIKINELQPVNSIIEIYKSANWCEREVWDMFGIFFSNHSDLRRILT 60

Query: 136 DYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWE 186
           DYGFEGHPLRKDFP++GF+E+ Y++  K+VVY  + L Q++R ++F +PW+
Sbjct: 61  DYGFEGHPLRKDFPLSGFLEVFYNELKKRVVYESINLSQQYRLFEFNNPWD 111


>gi|328925352|gb|AEB66295.1| NADH dehydrogenase subunit 9 [Silene multinervia]
 gi|328925354|gb|AEB66296.1| NADH dehydrogenase subunit 9 [Silene multinervia]
          Length = 150

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/127 (53%), Positives = 91/127 (71%)

Query: 40  VSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV 99
             L  FL+   +  F  +ID+CGVD+ SR  RF+VVY+ LS +YN R+RV+ +  E   +
Sbjct: 24  FQLLCFLKLHTYTRFQVLIDICGVDYPSRKLRFEVVYNLLSTRYNSRIRVQTSADEVTRI 83

Query: 100 PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYD 159
             +V ++P A  +EREVWDM+G+    HPDLRRILTDYGFEGHPLRKDFP++G+VE+ YD
Sbjct: 84  SPVVSLFPSAGRWEREVWDMFGLSSINHPDLRRILTDYGFEGHPLRKDFPLSGYVEVRYD 143

Query: 160 DKVKKVV 166
           D  K+VV
Sbjct: 144 DPEKRVV 150


>gi|111220501|ref|YP_711295.1| NADH dehydrogenase subunit C [Frankia alni ACN14a]
 gi|111148033|emb|CAJ59699.1| NADH-quinone oxidoreductase chain C (NADH dehydrogenase I, chain C)
           (NDH-1, chain C) [Frankia alni ACN14a]
          Length = 250

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 54/141 (38%), Positives = 76/141 (53%), Gaps = 3/141 (2%)

Query: 15  SFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSR--SNRF 72
               +V  AV   GEL+L V    L +L   LRDDP   F  +  L GVD+       R 
Sbjct: 90  QLGDAVERAVVDRGELTLHVRREGLPALAQTLRDDPGLRFELLSSLSGVDYPDDVTGRRL 149

Query: 73  DVVYHFLSPKYNRRLRVKIAVAEGKSVPS-IVGIYPGADWFEREVWDMYGIFFEGHPDLR 131
             V H  S  + RRLR++++VA+       +  ++P ADW ERE +D++GI + GHP L 
Sbjct: 150 HSVVHLTSMTHRRRLRLEVSVADADPTLPSLTSVWPTADWHEREAYDLFGIIYTGHPGLT 209

Query: 132 RILTDYGFEGHPLRKDFPVTG 152
           RI+    + GHP RKD+P+ G
Sbjct: 210 RIMMPDDWIGHPQRKDYPLGG 230


>gi|302864903|ref|YP_003833540.1| NADH (or F420H2) dehydrogenase subunit C [Micromonospora aurantiaca
           ATCC 27029]
 gi|302567762|gb|ADL43964.1| NADH (or F420H2) dehydrogenase, subunit C [Micromonospora
           aurantiaca ATCC 27029]
          Length = 243

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 61/158 (38%), Positives = 91/158 (57%), Gaps = 6/158 (3%)

Query: 6   EDLGDYIVNS---FSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
           +++ D +  +   F  ++   V   GEL+L V    +  +C  +RDD    F     + G
Sbjct: 72  DEVRDALEEAYPDFGDAIEKVVVDRGELTLHVRPERIAEVCQVMRDDLALRFELCSSVSG 131

Query: 63  VDFLS-RSNRFDVVYHFLSPKYNRRLRVKIAVAEGKS-VPSIVGIYPGADWFEREVWDMY 120
           VD+L  +  R  VVYH  S  Y R +R+++AV+  +  VPS+  +YP ADW ERE +DM+
Sbjct: 132 VDYLGAQERRLHVVYHLTSMTYRRSVRLEVAVSVEEPHVPSVTAVYPTADWQERETYDMF 191

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHY 158
           G+ F+GHP L RIL    +EGHP RKD+P+ G V + Y
Sbjct: 192 GVVFDGHPALTRILMPDDWEGHPQRKDYPLGG-VPVEY 228


>gi|327398401|ref|YP_004339270.1| NAD(P)H-quinone oxidoreductase subunit J [Hippea maritima DSM
           10411]
 gi|327181030|gb|AEA33211.1| NAD(P)H-quinone oxidoreductase subunit J [Hippea maritima DSM
           10411]
          Length = 176

 Score =  143 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 59/155 (38%), Positives = 82/155 (52%), Gaps = 2/155 (1%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M    E+L + I + F   +        ELS+ +    L     FL DD    F  ++ +
Sbjct: 1   MTN--EELFEKIQSKFGEYIVEHDTFRNELSVTIKKEKLHEFMQFLHDDSELKFDYLVMM 58

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
             VDF  R  RFD+VY   S  +   +RVK    E ++V S+  I+  A+W ERE +DM+
Sbjct: 59  TAVDFPKREERFDLVYELRSIPHKMIMRVKTRTKEDEAVDSVCDIWHSANWDERETYDMF 118

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVE 155
           GI F  HPDLRRIL    +EG+PLRKD+P+ G  E
Sbjct: 119 GIKFNNHPDLRRILMPEDWEGYPLRKDYPLKGKPE 153


>gi|332296566|ref|YP_004438489.1| NAD(P)H-quinone oxidoreductase subunit J [Thermodesulfobium
           narugense DSM 14796]
 gi|332179669|gb|AEE15358.1| NAD(P)H-quinone oxidoreductase subunit J [Thermodesulfobium
           narugense DSM 14796]
          Length = 178

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 57/151 (37%), Positives = 89/151 (58%), Gaps = 2/151 (1%)

Query: 4   KIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGV 63
            +E++   + + F   +     + G+LS+ V   D   +  FL++  +  F ++ DLCGV
Sbjct: 2   TVEEILKVVKDEFKERILSEEINFGQLSISVPKDDNTEVILFLKEHENLKFDHLADLCGV 61

Query: 64  DFLSRSN-RFDVVYHFLSPKYNRRLRVKIAVAEGKS-VPSIVGIYPGADWFEREVWDMYG 121
           D+    + R++VVY+  S K+  R+RVKI V E    V S+  I+ GA+W E E +DM+G
Sbjct: 62  DYYKLRDVRYEVVYNLYSIKFKHRIRVKIQVPEDDMEVNSLTCIFKGANWHECECYDMFG 121

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTG 152
           I F GHP+LRR+     + GHPLRKD+P+ G
Sbjct: 122 IKFRGHPNLRRVFMPDNWVGHPLRKDYPLKG 152


>gi|148266252|ref|YP_001232958.1| NADH (or F420H2) dehydrogenase, subunit C [Geobacter uraniireducens
           Rf4]
 gi|218534289|sp|A5G9B7|NUOC_GEOUR RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|146399752|gb|ABQ28385.1| NADH dehydrogenase subunit C [Geobacter uraniireducens Rf4]
          Length = 164

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 56/159 (35%), Positives = 87/159 (54%), Gaps = 4/159 (2%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M      +   +   F+ S+       GE+++ V   D+V+LC FL+      +  + D+
Sbjct: 4   MAENNRAVIK-LREKFASSILEVKEFRGEVTVIVRKEDIVALCKFLK--EELRYNLLTDV 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEG-KSVPSIVGIYPGADWFEREVWDM 119
             VD+L +  RF VVY+  S     RLR+K  V EG  ++ ++ G++  A+W ERE +D+
Sbjct: 61  TAVDYLGKDPRFMVVYNIYSIPNKDRLRIKAPVTEGECTIDTVCGVWTTANWLEREAYDL 120

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHY 158
            GI F+ HPDLRRI+    + GHPLRKD+P+ G     Y
Sbjct: 121 MGIIFKNHPDLRRIMMTDDWVGHPLRKDYPLQGPDREPY 159


>gi|222053572|ref|YP_002535934.1| NADH (or F420H2) dehydrogenase, subunit C [Geobacter sp. FRC-32]
 gi|221562861|gb|ACM18833.1| NADH (or F420H2) dehydrogenase, subunit C [Geobacter sp. FRC-32]
          Length = 164

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 56/159 (35%), Positives = 86/159 (54%), Gaps = 4/159 (2%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M      +   +   F+ S+       GE+++ V   D+VS+CSFL++     +  + D+
Sbjct: 4   MAENNRAVIK-LKEKFASSIIDIKEFRGEVTVTVKKEDIVSICSFLKEQQ--RYNLLTDI 60

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAV-AEGKSVPSIVGIYPGADWFEREVWDM 119
             VD+L    RF VVY+  S     R+R+K  V     ++ ++ G++  A+W EREV+D+
Sbjct: 61  TAVDYLGSDPRFMVVYNLYSIPNKDRIRIKAPVSDSDCTIDTVYGVWKTANWLEREVYDL 120

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHY 158
            GI F  HPDLRRIL    + GHPLRKD+P+ G     Y
Sbjct: 121 MGILFNNHPDLRRILMTDDWVGHPLRKDYPLQGPDREPY 159


>gi|256380663|ref|YP_003104323.1| NADH dehydrogenase subunit C [Actinosynnema mirum DSM 43827]
 gi|255924966|gb|ACU40477.1| NADH (or F420H2) dehydrogenase, subunit C [Actinosynnema mirum DSM
           43827]
          Length = 252

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 58/173 (33%), Positives = 88/173 (50%), Gaps = 15/173 (8%)

Query: 6   EDLGDYIVNSFS------GSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIID 59
           ++L D ++ +         +++      GE++  +    LV +   LRDDP   F     
Sbjct: 78  DELVDELLAAMGEQGLPADAIQQITVDRGEITFFLRREHLVDVARLLRDDPALRFELCSS 137

Query: 60  LCGVDF-LSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGK-SVPSIVGIYPGADWFEREVW 117
           L GVD+      R   V H  S  Y RR+R+++AV      VPS+V +YP  DW ERE W
Sbjct: 138 LSGVDYGPEAPQRLHSVVHLTSMTYRRRIRLEVAVDVDDAHVPSLVSVYPTTDWQEREAW 197

Query: 118 DMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYD------DKVKK 164
           DM+GI ++GHP L RIL    ++GHP RKD+P+ G + + Y          ++
Sbjct: 198 DMFGIVYDGHPGLTRILMPDDWDGHPQRKDYPLGG-IPVEYKGAEIPPPDQRR 249


>gi|320160241|ref|YP_004173465.1| NADH-quinone oxidoreductase subunit C [Anaerolinea thermophila
           UNI-1]
 gi|319994094|dbj|BAJ62865.1| NADH-quinone oxidoreductase chain C [Anaerolinea thermophila UNI-1]
          Length = 170

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 60/170 (35%), Positives = 97/170 (57%), Gaps = 12/170 (7%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  K+  + + + + F+          GE++L V    +V++   LRD+    F  ++D+
Sbjct: 1   MDEKMRTVVEGLQSRFN---LEVQEFRGEVTLIVPPEQIVAVAQTLRDEH--GFEQLVDV 55

Query: 61  CGVDF-LSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIV-GIYPGADWFEREVWD 118
             VD+   +  RF VVYH  S      + +++ +       S V  +YPGA+W+EREV+D
Sbjct: 56  TAVDYFPQQEPRFHVVYHIRSLAQTLIICLRVPLNGNFPSVSTVEKVYPGANWYEREVYD 115

Query: 119 MYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHY----DDKVKK 164
           M+GI FEGH DLRRIL  Y ++GHPLRKD+P+ G+ E+ +    D+ +K+
Sbjct: 116 MFGITFEGHSDLRRILMPYDWQGHPLRKDYPL-GYEEVQFSFNIDEVLKR 164


>gi|116749375|ref|YP_846062.1| trifunctional NADH dehydrogenase I subunit B/C/D [Syntrophobacter
           fumaroxidans MPOB]
 gi|218534237|sp|A0LJM5|NUBCD_SYNFM RecName: Full=NADH-quinone oxidoreductase subunit B/C/D; AltName:
           Full=NADH dehydrogenase I subunit B/C/D; AltName:
           Full=NDH-1 subunit B/C/D
 gi|116698439|gb|ABK17627.1| NADH dehydrogenase I, D subunit [Syntrophobacter fumaroxidans MPOB]
          Length = 787

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 54/170 (31%), Positives = 86/170 (50%), Gaps = 6/170 (3%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
             + ++L   +   F  +VR    +    +  V+   L  +  FL+ +    F+ + DL 
Sbjct: 217 SEREKELARVLSERFGDAVREEPFTSDMPTFHVETNRLKDVLGFLKKEASPRFLRLDDLT 276

Query: 62  GVD-----FLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPS-IVGIYPGADWFERE 115
            VD       S    + +VYH LS +   R+R+K  +   +     I  I+P A+W+ERE
Sbjct: 277 AVDESARRDRSAYPDWTMVYHLLSFEPAGRVRLKTGLHGRQPALPSITDIWPSANWYERE 336

Query: 116 VWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKV 165
           V+D++GI FEGHP+LRRI+  + +EGHPLRKD+P        Y     +V
Sbjct: 337 VYDLFGIRFEGHPNLRRIMMPHDWEGHPLRKDYPGRATQMAPYTLGDARV 386


>gi|88606841|ref|YP_505106.1| NADH dehydrogenase I, C subunit, truncation [Anaplasma
           phagocytophilum HZ]
 gi|88597904|gb|ABD43374.1| NADH dehydrogenase I, C subunit, truncated [Anaplasma
           phagocytophilum HZ]
          Length = 91

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 52/91 (57%), Positives = 68/91 (74%)

Query: 99  VPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHY 158
           +PS+  ++  A WFEREV+DMYGI F  HPDLRRILTDYGF GHP+ KDFP+TG+ E+ Y
Sbjct: 1   MPSVTSVFGSAGWFEREVYDMYGIEFSDHPDLRRILTDYGFRGHPMLKDFPLTGYEEIRY 60

Query: 159 DDKVKKVVYRPVELMQEHRDYDFLSPWEGVN 189
           D +  KV Y+PV+L Q  R ++ +SPW+G  
Sbjct: 61  DFRKGKVAYQPVDLQQNFRLFNSMSPWKGYK 91


>gi|296130549|ref|YP_003637799.1| NADH (or F420H2) dehydrogenase, subunit C [Cellulomonas flavigena
           DSM 20109]
 gi|296022364|gb|ADG75600.1| NADH (or F420H2) dehydrogenase, subunit C [Cellulomonas flavigena
           DSM 20109]
          Length = 309

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 60/157 (38%), Positives = 82/157 (52%), Gaps = 9/157 (5%)

Query: 16  FSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSR-SNRFDV 74
           F+ +V   V   GEL+L+V    LV +   LRDDP   F   + + GV F          
Sbjct: 151 FANAVESVVVDRGELTLNVAREHLVEVVQQLRDDPDLRFELSLGVSGVHFPHDAGRELHA 210

Query: 75  VYHFLSPKYNRRLRVKIAVAEGKS-VPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRI 133
           VY  +S  + RRLR+++AV EG   VPS   +YP  DW ERE WD +GI F+GHP L RI
Sbjct: 211 VYQIVSVTHGRRLRLEVAVPEGDPHVPSTTAVYPANDWHERETWDFFGIVFDGHPGLARI 270

Query: 134 LTDYGFEGHPLRKDFPVTGFVELHYD------DKVKK 164
                + GHP RKD+P+ G + + Y          ++
Sbjct: 271 QMPDDWPGHPQRKDYPLGG-IPVEYKGATIPPPDQRR 306


>gi|197120285|ref|YP_002140712.1| NADH dehydrogenase I subunit C [Geobacter bemidjiensis Bem]
 gi|218534274|sp|B5EFG1|NUOC_GEOBB RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|197089645|gb|ACH40916.1| NADH dehydrogenase I, C subunit [Geobacter bemidjiensis Bem]
          Length = 161

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 54/159 (33%), Positives = 84/159 (52%), Gaps = 4/159 (2%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M      +   +   F+ ++       GE+++ V   +++ +   LRDD    +  + D+
Sbjct: 1   MAENNRAVVK-LKERFANALLDCTEYRGEVTVTVKKENILEVLKCLRDD--LRYNFLTDV 57

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDM 119
             VD+L +  RF VVYH +S     R+RVK  + E   S+ S   ++  ADW ERE +DM
Sbjct: 58  TAVDYLGQDPRFMVVYHLMSIPNKDRIRVKAPLTEADCSIDSATALWNSADWVEREAYDM 117

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHY 158
           +GI F+ HP+L RIL    + GHPLRKD+P+ G     Y
Sbjct: 118 FGIDFKNHPNLVRILMTDDWVGHPLRKDYPLQGPDREPY 156


>gi|288917185|ref|ZP_06411554.1| NADH (or F420H2) dehydrogenase, subunit C [Frankia sp. EUN1f]
 gi|288351376|gb|EFC85584.1| NADH (or F420H2) dehydrogenase, subunit C [Frankia sp. EUN1f]
          Length = 229

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 55/141 (39%), Positives = 81/141 (57%), Gaps = 3/141 (2%)

Query: 15  SFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSR--SNRF 72
               +V   V + GEL++ V    L+ +   LRDDP   F  +  L GVD+       R 
Sbjct: 69  ELGDAVERVVFAYGELTIHVRRERLLDVAWTLRDDPGLRFELLSSLSGVDYPDDLTGRRL 128

Query: 73  DVVYHFLSPKYNRRLRVKIAVAEGKS-VPSIVGIYPGADWFEREVWDMYGIFFEGHPDLR 131
             V H  S  + RRLRV+++VA+G   +PS+  ++P ADW ERE +D++G+ +EGHP L 
Sbjct: 129 HSVVHLTSMTHRRRLRVEVSVADGDPHLPSLTPVWPTADWHEREAYDLFGLVYEGHPGLA 188

Query: 132 RILTDYGFEGHPLRKDFPVTG 152
           RI+    + GHP RKD+P+ G
Sbjct: 189 RIMMPDDWVGHPQRKDYPLGG 209


>gi|253702593|ref|YP_003023782.1| NADH (or F420H2) dehydrogenase, subunit C [Geobacter sp. M21]
 gi|251777443|gb|ACT20024.1| NADH (or F420H2) dehydrogenase, subunit C [Geobacter sp. M21]
          Length = 161

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 4/159 (2%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M      +   +   F+ ++       GE+++ V   +++ +   LRDD    +  + D+
Sbjct: 1   MAENNRAVVK-LKERFANALLDCTEYRGEVTVTVKKENILEVLKCLRDD--LRYNFLTDV 57

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIA-VAEGKSVPSIVGIYPGADWFEREVWDM 119
             VD+L +  RF VVYH +S     R+RVK        S+ S   ++  ADW ERE +DM
Sbjct: 58  TAVDYLGQDPRFMVVYHLMSIPNKDRIRVKAPLTESDCSIDSATALWNSADWVEREAYDM 117

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHY 158
           +GI F+ HP+L RIL    + GHPLRKD+P+ G     Y
Sbjct: 118 FGIEFKNHPNLVRILMTDDWVGHPLRKDYPLQGPDREPY 156


>gi|328925350|gb|AEB66294.1| NADH dehydrogenase subunit 9 [Silene lydia]
          Length = 136

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 68/128 (53%), Positives = 94/128 (73%)

Query: 32  LDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKI 91
           ++ D   +  L  FL+   +  +  ++D+CGVD+ SR  RF+VVY+ LS ++N R+RV+ 
Sbjct: 9   IETDMDFVFQLLCFLKLHTYTRYEVLVDICGVDYPSRRLRFEVVYNLLSTRFNSRIRVQS 68

Query: 92  AVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVT 151
           +  E   VPS+V ++P A+W EREVWDM+GI F  HPDLRRILTDYGFEGHPLRKDFP++
Sbjct: 69  SADEVSRVPSVVSLFPSANWCEREVWDMFGISFINHPDLRRILTDYGFEGHPLRKDFPLS 128

Query: 152 GFVELHYD 159
           G+VE+ YD
Sbjct: 129 GYVEVRYD 136


>gi|218513797|ref|ZP_03510637.1| NADH-ubiquinone oxidoreductase protein, chain C [Rhizobium etli
           8C-3]
          Length = 177

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 57/142 (40%), Positives = 78/142 (54%)

Query: 14  NSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFD 73
             F  ++     + G     V    +V  C FL++ P   F  + D+CGVD    + RF+
Sbjct: 2   ERFGDTIEDLGTAHGIDVFAVPPERIVEFCRFLKEHPAMQFNFLSDICGVDHYPETLRFE 61

Query: 74  VVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRI 133
            VYH  S     R+R+K  + +   VPS+ G++  A+W ERE WDMYGI F  HPDLRRI
Sbjct: 62  AVYHLYSLPNRWRVRIKCRLGDPPEVPSVTGVWRTANWHEREAWDMYGIRFAEHPDLRRI 121

Query: 134 LTDYGFEGHPLRKDFPVTGFVE 155
               GFEG P RKDFP+ G+ +
Sbjct: 122 YMWEGFEGFPQRKDFPLRGYKD 143


>gi|269128611|ref|YP_003301981.1| NADH (or F420H2) dehydrogenase subunit C [Thermomonospora curvata
           DSM 43183]
 gi|268313569|gb|ACY99943.1| NADH (or F420H2) dehydrogenase, subunit C [Thermomonospora curvata
           DSM 43183]
          Length = 248

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 58/158 (36%), Positives = 82/158 (51%), Gaps = 6/158 (3%)

Query: 6   EDLGDYIVNSFSG---SVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
           +++ D +  +F     +V   V   GE++  V    L  +   LRDDP   F     + G
Sbjct: 77  DEVADALERAFPDFGEAVERVVVDRGEITFVVRRQYLPQVAQTLRDDPALRFELCTGVSG 136

Query: 63  VDFL-SRSNRFDVVYHFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMY 120
           V +          VYHFLS  +NRR+R+++   +    +PSIV IYP  DW ERE +D +
Sbjct: 137 VHYPSDTGAELHAVYHFLSMTHNRRIRIEVTCPDADPHIPSIVSIYPTNDWHERETYDFF 196

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTG-FVELH 157
           GI F+GHP L RI     + GHP RKD+P+ G  VE  
Sbjct: 197 GIIFDGHPALTRIEMPDDWVGHPQRKDYPLGGIPVEYR 234


>gi|200004038|ref|YP_002221373.1| NADH dehydrogenase subunit 9 [Blastocystis sp. DMP/02-328]
 gi|198385462|gb|ACH86056.1| NADH dehydrogenase subunit 9 [Blastocystis sp. DMP/02-328]
          Length = 196

 Score =  141 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 60/170 (35%), Positives = 102/170 (60%)

Query: 7   DLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFL 66
           +    I+N     ++ ++ +  EL+  ++      + +FL+   +  +  + D+C +D+ 
Sbjct: 15  NFSKSILNMLPNYIQASIYTNRELTFIINKNYNTLVINFLKKYTNSQYQTMADMCAIDYP 74

Query: 67  SRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEG 126
            +  RF++VY  LS  YN R+++K  + E  S+ +I  ++ GA+W+ERE++D +GI+F  
Sbjct: 75  MKQFRFEIVYTLLSLVYNSRIKIKTYLKELDSIETITTLFKGANWWEREIYDFFGIYFTH 134

Query: 127 HPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEH 176
           + DLRRILTDYGF GHPL KDFP+ GF E+ YDD  K +   P+E   + 
Sbjct: 135 NTDLRRILTDYGFIGHPLSKDFPLMGFYEVTYDDITKCIKKTPIEYSPKF 184


>gi|322421848|ref|YP_004201071.1| NADH (or F420H2) dehydrogenase subunit C [Geobacter sp. M18]
 gi|320128235|gb|ADW15795.1| NADH (or F420H2) dehydrogenase, subunit C [Geobacter sp. M18]
          Length = 161

 Score =  141 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 55/159 (34%), Positives = 83/159 (52%), Gaps = 4/159 (2%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M      +   +   F+ ++       GE+++ V    ++ +   LRDD    +  + DL
Sbjct: 1   MAENNRAVVK-LKERFADALLEYKEHRGEVTVTVKKESILEVLKCLRDD--LRYNFLSDL 57

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDM 119
             VD+L +  RF VVYH LS     R+RVK  V E   S+ S   ++  A+W ERE +D+
Sbjct: 58  TAVDYLGQEPRFMVVYHLLSIPNKDRVRVKAPVTEADCSIDSATALWNTANWLEREAFDL 117

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHY 158
           +GI F+ HP+L RIL    + GHPLRKD+P+ G     Y
Sbjct: 118 FGIEFKNHPNLVRILMTDDWVGHPLRKDYPLQGPDREPY 156


>gi|206891078|ref|YP_002248749.1| NADH-quinone oxidoreductase chain c [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206743016|gb|ACI22073.1| NADH-quinone oxidoreductase chain c [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 177

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 60/147 (40%), Positives = 86/147 (58%), Gaps = 2/147 (1%)

Query: 7   DLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFL 66
           ++   I + FS  V + +    E S+ V    +  + S L++ P   F  +IDL  VD+L
Sbjct: 5   EIIKRIRDKFSDEVLWFICFRDECSIVVKKEKIKDILSHLKNTPELEFDYLIDLTAVDYL 64

Query: 67  SR-SNRFDVVYHFLSPKYNRRLRVKIAVA-EGKSVPSIVGIYPGADWFEREVWDMYGIFF 124
                RFDVVYH +S K+  R+R+K  V  +G  + S+  ++  A+WFERE +DM+GI F
Sbjct: 65  GFREPRFDVVYHLMSIKHKHRIRIKAQVPEQGCCIDSVADLWATANWFERECYDMFGIEF 124

Query: 125 EGHPDLRRILTDYGFEGHPLRKDFPVT 151
            GHPDLRRIL    + G PLRKD+PV 
Sbjct: 125 TGHPDLRRILMPEDWNGFPLRKDYPVK 151


>gi|78224543|ref|YP_386290.1| NADH (or F420H2) dehydrogenase subunit C [Geobacter metallireducens
           GS-15]
 gi|123570772|sp|Q39QA9|NUOC_GEOMG RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|78195798|gb|ABB33565.1| NADH dehydrogenase subunit C [Geobacter metallireducens GS-15]
          Length = 162

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 57/155 (36%), Positives = 78/155 (50%), Gaps = 5/155 (3%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M      +   +   FS SV       GE+++ V   D+V +C+FL+      +    D+
Sbjct: 1   MAETNRAVIK-LREKFSASVLDVKEFRGEVTVTVKREDIVEICNFLK--SSLAYNLCTDV 57

Query: 61  CGVDFLS-RSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGA-DWFEREVWD 118
             VD+L  +  RF VVY+  S     RLRVK  V E       V     A +W EREV+D
Sbjct: 58  TAVDYLGKQEPRFMVVYNLYSIPNKDRLRVKAGVPEAGCSIDTVSCVWSAANWLEREVYD 117

Query: 119 MYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGF 153
           + G+ F  HPDLRRIL    + GHPLRKD+P+ G 
Sbjct: 118 LMGVVFNNHPDLRRILMTDDWVGHPLRKDYPLQGP 152


>gi|332669451|ref|YP_004452459.1| NADH (or F420H2) dehydrogenase, subunit C [Cellulomonas fimi ATCC
           484]
 gi|332338489|gb|AEE45072.1| NADH (or F420H2) dehydrogenase, subunit C [Cellulomonas fimi ATCC
           484]
          Length = 265

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 57/168 (33%), Positives = 87/168 (51%), Gaps = 12/168 (7%)

Query: 8   LGDYIVNS---FSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD 64
           L + +  +   F+ +V   V    EL+L V    +V++ S LRDDP   F   + + GV 
Sbjct: 96  LAEVLDENGTGFANAVESVVVDREELTLHVAREHVVAVASALRDDPDLRFELSLGVSGVH 155

Query: 65  FL-SRSNRFDVVYHFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMYGI 122
           +   +      VYH +S  + RRLR ++A+ +    VPS V +YP  DW ERE +D +GI
Sbjct: 156 YPHEQGRELHAVYHVVSVTHGRRLRFEVAIPDADPHVPSTVSVYPANDWHERETYDFFGI 215

Query: 123 FFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYD------DKVKK 164
            F+GHP L RI     + GHP RKD+P+ G + + Y          ++
Sbjct: 216 VFDGHPGLARIEMPDDWPGHPQRKDYPLGG-IPVEYKGATVPPPDQRR 262


>gi|300771675|ref|ZP_07081550.1| NADH-quinone oxidoreductase subunit C [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300761664|gb|EFK58485.1| NADH-quinone oxidoreductase subunit C [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 167

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 85/158 (53%), Gaps = 3/158 (1%)

Query: 2   VRKIEDLG--DYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIID 59
           + K+ ++   + +   F   V+ A  S G L+++    D++ + +F++DD    F+ + D
Sbjct: 1   MDKLTNIQLWERLQEHFGAKVKNASESYGLLTIETSKADIIDVLAFIKDDTILQFIYLTD 60

Query: 60  LCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPS-IVGIYPGADWFEREVWD 118
           +  V + ++   F VVYH  S  +N R+R+K+ +            ++ GA+W ERE +D
Sbjct: 61  ITAVHYPNQEEAFAVVYHVHSLVHNVRIRIKVFIDGQHPAIPSATVLWNGANWMERETYD 120

Query: 119 MYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVEL 156
            +GI FEGHPDLRRIL        P+RK++P+     +
Sbjct: 121 FFGIQFEGHPDLRRILNVDEMTVFPMRKEYPLEDPNRV 158


>gi|171187537|gb|ACB41372.1| NADH dehydrogenase subunit C [Mimulus guttatus]
          Length = 153

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 66/130 (50%), Positives = 87/130 (66%)

Query: 40  VSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV 99
             L  FL+   +      ID+CGVD+ SR  RF+VVY+ LS +YN R+RV+ +  E   +
Sbjct: 24  FQLLCFLKLHTYTRVQVSIDICGVDYPSRKRRFEVVYNLLSTRYNSRIRVQTSADEVTRI 83

Query: 100 PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYD 159
             +V  +P A  +EREVWDM+G+    HPDLRRI TDYGFEGHPLRKD P++G+VE+ YD
Sbjct: 84  SPVVSPFPSAGRWEREVWDMFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYD 143

Query: 160 DKVKKVVYRP 169
           D  K+VV  P
Sbjct: 144 DPEKRVVSEP 153


>gi|66219964|gb|AAY42997.1| Nqo5 [Rhodothermus marinus]
          Length = 230

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 53/147 (36%), Positives = 84/147 (57%), Gaps = 3/147 (2%)

Query: 7   DLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFL 66
           ++ + +   F   +       GE ++ V    +V +C FL+++    F  + DL G+D  
Sbjct: 40  EVVEALKERFGDVIEEVELYAGEHTVRVRADKIVEVCRFLKEEQ--GFNYLADLGGIDRF 97

Query: 67  SRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPS-IVGIYPGADWFEREVWDMYGIFFE 125
           +   RF+V Y+ +S +  +R+R+K+ V E   V   +  +Y  A+W ERE +DM+GI FE
Sbjct: 98  TDEGRFEVFYNLVSIERRKRIRLKVRVEEDNPVVPSVTSVYRAANWNERECYDMFGIRFE 157

Query: 126 GHPDLRRILTDYGFEGHPLRKDFPVTG 152
           GHPDLRR+     FE HPLRK+FP+ G
Sbjct: 158 GHPDLRRMYMPEDFEYHPLRKEFPLLG 184


>gi|256396790|ref|YP_003118354.1| NADH dehydrogenase subunit C [Catenulispora acidiphila DSM 44928]
 gi|256363016|gb|ACU76513.1| NADH (or F420H2) dehydrogenase, subunit C [Catenulispora acidiphila
           DSM 44928]
          Length = 235

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 51/151 (33%), Positives = 78/151 (51%), Gaps = 4/151 (2%)

Query: 6   EDLGDYIVNS-FS-GSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGV 63
           ++L   +        ++   V   G+L++ V    LV +   LRDDP   F   + + GV
Sbjct: 65  DELEGALEEQGLPLEAISAYVVYRGQLTIHVPREHLVRVAKTLRDDPALRFEMCLGVTGV 124

Query: 64  DFLSR-SNRFDVVYHFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMYG 121
            F  +       V   LS  +NRR+R++    +    +PS+  +YP  DW ERE +DM+G
Sbjct: 125 HFPEQSGRELHSVVPLLSITHNRRIRLETTAPDVDPHIPSLYEVYPTVDWHERESYDMFG 184

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTG 152
           I ++GHP L RIL    + GHP RKD+P+ G
Sbjct: 185 IIYDGHPGLTRILMPDDWLGHPQRKDYPLGG 215


>gi|268317702|ref|YP_003291421.1| NADH (or F420H2) dehydrogenase, subunit C [Rhodothermus marinus DSM
           4252]
 gi|262335236|gb|ACY49033.1| NADH (or F420H2) dehydrogenase, subunit C [Rhodothermus marinus DSM
           4252]
          Length = 230

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 53/147 (36%), Positives = 84/147 (57%), Gaps = 3/147 (2%)

Query: 7   DLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFL 66
           ++ + +   F   +       GE ++ V    +V +C FL+++    F  + DL G+D  
Sbjct: 40  EVVEALKERFGDVIEEVELYAGEHTVRVRADKIVEVCRFLKEEQ--GFNYLADLGGIDRF 97

Query: 67  SRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPS-IVGIYPGADWFEREVWDMYGIFFE 125
           +   RF+V Y+ +S +  +R+R+K+ V E   V   +  +Y  A+W ERE +DM+GI FE
Sbjct: 98  TDEGRFEVFYNLVSIERRKRIRLKVRVEEDNPVVPSVTSVYRAANWNERECYDMFGICFE 157

Query: 126 GHPDLRRILTDYGFEGHPLRKDFPVTG 152
           GHPDLRR+     FE HPLRK+FP+ G
Sbjct: 158 GHPDLRRMYMPEDFEYHPLRKEFPLLG 184


>gi|149909803|ref|ZP_01898454.1| NuoC2 NADH I CHAIN C [Moritella sp. PE36]
 gi|149807135|gb|EDM67091.1| NuoC2 NADH  I CHAIN C [Moritella sp. PE36]
          Length = 180

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 61/149 (40%), Positives = 88/149 (59%), Gaps = 1/149 (0%)

Query: 12  IVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNR 71
           +++SF+G +    N +    + V   DLV LC FLRDD    F  + D+ G+DF   + R
Sbjct: 12  LIDSFNGRISIDPNVIDMPCVVVSPKDLVELCLFLRDDDAFKFNFMADIGGIDFHPNTPR 71

Query: 72  FDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLR 131
           + +VYH  S     RLR+K  + +    P+I  ++  A+W ERE +DM+GI FEGHPDLR
Sbjct: 72  YQLVYHLYSISLGWRLRIKCPLKDPPKAPTITHLWTTANWHEREAYDMFGIVFEGHPDLR 131

Query: 132 RILTDYGFEGHPLRKDFPVTGFVELHYDD 160
           RI     FEG P+RKDFP+ G+ +  Y+ 
Sbjct: 132 RIYMWQEFEGWPMRKDFPLRGYKD-KYNP 159


>gi|302523879|ref|ZP_07276221.1| NADH-quinone oxidoreductase subunit C [Streptomyces sp. AA4]
 gi|302432774|gb|EFL04590.1| NADH-quinone oxidoreductase subunit C [Streptomyces sp. AA4]
          Length = 253

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 54/138 (39%), Positives = 77/138 (55%), Gaps = 2/138 (1%)

Query: 17  SGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFL-SRSNRFDVV 75
             ++       GE++  V    LV +   LR+DP   F  ++ + GVD+      R   V
Sbjct: 96  PSAILQTTVDRGEITFYVSREHLVDIAKVLRNDPGLRFEMLMAVTGVDYGVDVPQRMHAV 155

Query: 76  YHFLSPKYNRRLRVKIAVAEGK-SVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRIL 134
           Y FLS  Y RR+R++I +      VPS+V +Y  ADW ERE +DM+GI F+GHP L RI 
Sbjct: 156 YDFLSMTYRRRIRLEITMDMDDLHVPSLVPVYATADWHEREAYDMFGIVFDGHPGLTRIF 215

Query: 135 TDYGFEGHPLRKDFPVTG 152
               ++GHP RKD+P+ G
Sbjct: 216 MPDDWDGHPQRKDYPLGG 233


>gi|158317834|ref|YP_001510342.1| NADH dehydrogenase subunit C [Frankia sp. EAN1pec]
 gi|158113239|gb|ABW15436.1| NADH (or F420H2) dehydrogenase, subunit C [Frankia sp. EAN1pec]
          Length = 229

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 55/151 (36%), Positives = 83/151 (54%), Gaps = 4/151 (2%)

Query: 15  SFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSR--SNRF 72
               +V   V + GEL++ V    L+ +   LRDDP   F  +  L GVD+       R 
Sbjct: 69  ELGDAVERVVFAYGELTIHVRRERLLDVAWTLRDDPGLRFELLSSLSGVDYPDDLTGRRL 128

Query: 73  DVVYHFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLR 131
             V H  S  + RRLRV+++VA+    +PS+  ++P ADW ERE +D++GI +EGH +L 
Sbjct: 129 HSVVHLTSLTHRRRLRVEVSVADGDAVLPSLTPVWPTADWHEREAYDLFGIVYEGHHELT 188

Query: 132 RILTDYGFEGHPLRKDFPVTGFVELHYDDKV 162
           RI+    + GHP RKD+P+ G + + Y    
Sbjct: 189 RIMMPDDWVGHPQRKDYPLGG-IPVEYKGAQ 218


>gi|294630798|ref|ZP_06709358.1| NADH dehydrogenase I, C subunit [Streptomyces sp. e14]
 gi|292834131|gb|EFF92480.1| NADH dehydrogenase I, C subunit [Streptomyces sp. e14]
          Length = 245

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 52/166 (31%), Positives = 86/166 (51%), Gaps = 10/166 (6%)

Query: 6   EDLGDYIVNSF-------SGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNII 58
           +++ D +  +          ++   V   GEL+  ++   L+ +   LRDDP   F    
Sbjct: 70  DEVADELEGALEEQGLLPGNAIEKTVVDRGELTFHIEREHLLRVARTLRDDPALRFELCT 129

Query: 59  DLCGVDFLSRSNR-FDVVYHFLSPKYNRRLRVKIAVAEG-KSVPSIVGIYPGADWFEREV 116
            + GV +     R    VYH  S  +NR +R++++  +  + +PS+V +YP  DW ERE 
Sbjct: 130 GVSGVHYPHDKGRELHAVYHLRSITHNRLIRLEVSAPDDDRHIPSLVSVYPTNDWHERET 189

Query: 117 WDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKV 162
           WD +GI F+GHP L RI+    ++GHP RKD+P+ G + + Y    
Sbjct: 190 WDFFGIVFDGHPALTRIMMPDDWQGHPQRKDYPLGG-IPVEYKGAQ 234


>gi|227535969|ref|ZP_03966018.1| NADH dehydrogenase I chain C [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227244212|gb|EEI94227.1| NADH dehydrogenase I chain C [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 167

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 84/158 (53%), Gaps = 3/158 (1%)

Query: 2   VRKIEDLG--DYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIID 59
           + K+ ++   + +   F   V+ A  S G L++     D++ + +F++DD    F+ + D
Sbjct: 1   MDKLTNIQLWERLQEHFGTKVKNASESYGLLTIQTSKTDIIDVLAFIKDDTILQFIYLTD 60

Query: 60  LCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPS-IVGIYPGADWFEREVWD 118
           +  V + ++   F VVYH  S  +N R+R+K+ +            ++ GA+W ERE +D
Sbjct: 61  ITAVHYPNQEEAFAVVYHVHSLVHNVRIRIKVFIDGQHPAIPSATVLWNGANWMERETYD 120

Query: 119 MYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVEL 156
            +GI FEGHPDLRRIL        P+RK++P+     +
Sbjct: 121 FFGIQFEGHPDLRRILNVDEMTVFPMRKEYPLEDPNRV 158


>gi|119714786|ref|YP_921751.1| NADH dehydrogenase subunit C [Nocardioides sp. JS614]
 gi|218534312|sp|A1SE29|NUOC_NOCSJ RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|119535447|gb|ABL80064.1| NADH dehydrogenase subunit C [Nocardioides sp. JS614]
          Length = 250

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 56/150 (37%), Positives = 80/150 (53%), Gaps = 9/150 (6%)

Query: 23  AVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFL-SRSNRFDVVYHFLSP 81
            V   GE++  +   DL+ +   LRDD    F     + GV +          VYH LS 
Sbjct: 99  VVIHRGEITFHLRREDLLPVAQVLRDDERLRFEFCAGVSGVHYPDETGRELHAVYHLLSM 158

Query: 82  KYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFE 140
            +NRR+R+++AV +    +PSIV +YP  DW ERE +DM+GI F+GHP L RIL    + 
Sbjct: 159 THNRRIRLEVAVPDADPHIPSIVPVYPTNDWHERETYDMFGIIFDGHPALTRILMPDDWP 218

Query: 141 GHPLRKDFPVTGFVELHYD------DKVKK 164
           GHP RKD+P+ G V + Y          ++
Sbjct: 219 GHPQRKDYPLGG-VPVEYKGGTVPPPDQRR 247


>gi|284992923|ref|YP_003411477.1| NADH (or F420H2) dehydrogenase subunit C [Geodermatophilus obscurus
           DSM 43160]
 gi|284066168|gb|ADB77106.1| NADH (or F420H2) dehydrogenase, subunit C [Geodermatophilus
           obscurus DSM 43160]
          Length = 245

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/152 (40%), Positives = 84/152 (55%), Gaps = 10/152 (6%)

Query: 19  SVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRS--------N 70
           +V+  +   GE++  V    L++L   LRDD    F     + GVD+L            
Sbjct: 83  AVQRVLVDRGEITYFVAREHLLTLVRALRDDEALRFELCSSVSGVDYLDSGGPAAGPGRP 142

Query: 71  RFDVVYHFLSPKYNRRLRVKIAVA-EGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPD 129
           R  VV H  S  Y RR+R+++AV  E   VPS+  +YP ADW ERE WDM+GI F+GHP 
Sbjct: 143 RLHVVLHLTSMTYRRRIRLEVAVTAEDPHVPSVTSVYPTADWHERETWDMFGIVFDGHPA 202

Query: 130 LRRILTDYGFEGHPLRKDFPVTGFVELHYDDK 161
           L RIL    ++GHP RKD+P+ G V + Y D 
Sbjct: 203 LTRILMPDDWDGHPQRKDYPLGG-VPVEYHDA 233


>gi|269977614|ref|ZP_06184581.1| NADH dehydrogenase subunit c [Mobiluncus mulieris 28-1]
 gi|269934217|gb|EEZ90784.1| NADH dehydrogenase subunit c [Mobiluncus mulieris 28-1]
          Length = 266

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 52/137 (37%), Positives = 74/137 (54%), Gaps = 2/137 (1%)

Query: 18  GSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSR-SNRFDVVY 76
            ++   V   GEL++ V  G + ++   LRDD    F   + + GV +          VY
Sbjct: 110 TAIERVVVDHGELTIYVSRGAIRAVAQALRDDQDLRFELCLGVSGVHYPHDTGRELHAVY 169

Query: 77  HFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILT 135
           H +S  +NR LRV+    +    +PS+V IYPG +W ERE +DM+GI F GHP L R L 
Sbjct: 170 HLMSVTHNRNLRVETTCPDADPKIPSVVDIYPGNNWHERETFDMFGIIFTGHPALTRSLL 229

Query: 136 DYGFEGHPLRKDFPVTG 152
              + GHP RKD+P+ G
Sbjct: 230 PDDWVGHPQRKDYPLGG 246


>gi|227874586|ref|ZP_03992749.1| NADH dehydrogenase subunit C [Mobiluncus mulieris ATCC 35243]
 gi|306817870|ref|ZP_07451609.1| NADH-quinone oxidoreductase subunit C [Mobiluncus mulieris ATCC
           35239]
 gi|307701274|ref|ZP_07638295.1| NADH dehydrogenase, C subunit [Mobiluncus mulieris FB024-16]
 gi|227844795|gb|EEJ54941.1| NADH dehydrogenase subunit C [Mobiluncus mulieris ATCC 35243]
 gi|304649349|gb|EFM46635.1| NADH-quinone oxidoreductase subunit C [Mobiluncus mulieris ATCC
           35239]
 gi|307613435|gb|EFN92683.1| NADH dehydrogenase, C subunit [Mobiluncus mulieris FB024-16]
          Length = 266

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 52/137 (37%), Positives = 74/137 (54%), Gaps = 2/137 (1%)

Query: 18  GSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSR-SNRFDVVY 76
            ++   V   GEL++ V  G + ++   LRDD    F   + + GV +          VY
Sbjct: 110 TAIERVVVDHGELTIYVSRGAIRAVAQALRDDQDLRFELCLGVSGVHYPHDTGRELHAVY 169

Query: 77  HFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILT 135
           H +S  +NR LRV+    +    +PS+V IYPG +W ERE +DM+GI F GHP L R L 
Sbjct: 170 HLMSVTHNRNLRVETTCPDADPKIPSVVDIYPGNNWHERETFDMFGIIFTGHPALTRSLL 229

Query: 136 DYGFEGHPLRKDFPVTG 152
              + GHP RKD+P+ G
Sbjct: 230 PDDWVGHPQRKDYPLGG 246


>gi|320095550|ref|ZP_08027214.1| NADH-quinone oxidoreductase subunit C [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319977528|gb|EFW09207.1| NADH-quinone oxidoreductase subunit C [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 245

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/150 (32%), Positives = 71/150 (47%), Gaps = 5/150 (3%)

Query: 8   LGDYIVN---SFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD 64
           L + I       +  +   V   G+L++ +    +V + S+LRDDP   F   +   GV 
Sbjct: 76  LEERIGADGLEVADVIEKVVVDRGQLTVFIAREHIVRVASYLRDDPDLRFEMCLGTNGVH 135

Query: 65  FL-SRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPS-IVGIYPGADWFEREVWDMYGI 122
           +          VY   S  +NR +R++ A  +       IV +YP  DW ERE WD+ GI
Sbjct: 136 YPADTGRELHAVYPLYSITHNRMIRLEAACPDEDPRIPSIVSVYPANDWQERETWDLLGI 195

Query: 123 FFEGHPDLRRILTDYGFEGHPLRKDFPVTG 152
            F GHP L R      + GHP RKD+P+ G
Sbjct: 196 VFTGHPSLTRTALPDDWVGHPQRKDYPLGG 225


>gi|227494505|ref|ZP_03924821.1| NADH dehydrogenase (quinone) [Actinomyces coleocanis DSM 15436]
 gi|226832239|gb|EEH64622.1| NADH dehydrogenase (quinone) [Actinomyces coleocanis DSM 15436]
          Length = 242

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/156 (35%), Positives = 78/156 (50%), Gaps = 6/156 (3%)

Query: 8   LGDYIVNS---FSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD 64
           L + I          +   V    EL++ +    L+ +C +LRDD    F   + + GV 
Sbjct: 73  LEELIEAEGLAVKDVIERVVVDRDELTIFISRQHLLQVCQWLRDDQDLRFELCLGVSGVH 132

Query: 65  FLSRSNR-FDVVYHFLSPKYNRRLRVKIAVA-EGKSVPSIVGIYPGADWFEREVWDMYGI 122
           +     R F  VY  +S  +NR LR+++        +PS+V IYPG DW ERE WD+ GI
Sbjct: 133 YPGDKGREFHAVYALMSVTHNRNLRLEVTCPDMDCRIPSVVSIYPGNDWHERETWDLMGI 192

Query: 123 FFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHY 158
            F GHP L R      + GHP RKD+P+ G V + Y
Sbjct: 193 IFTGHPGLTRTAMPDDWVGHPQRKDYPLGG-VPVEY 227


>gi|157166932|gb|ABV25446.1| NADH dehydrogenase subunit 9 [Silene noctiflora]
 gi|255709052|gb|ACU30431.1| NADH dehydrogenase subunit 9 [Silene turkestanica]
          Length = 131

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 67/126 (53%), Positives = 88/126 (69%)

Query: 32  LDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKI 91
            D     L  L  FLR   +  F  +ID+CGVD+ SR  RF+VVY+ LS +YN R+RV+ 
Sbjct: 6   FDTTPAFLFQLLCFLRLHTYTRFEVLIDICGVDYPSRQVRFEVVYNLLSTRYNSRIRVQS 65

Query: 92  AVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVT 151
           +  E   +  +V ++P A W+EREVWDM+G+ F  HPDLRRILTDYGFEGHPLRKDFP++
Sbjct: 66  SADEVTRISPVVSLFPSAGWWEREVWDMFGLSFINHPDLRRILTDYGFEGHPLRKDFPLS 125

Query: 152 GFVELH 157
           G+VE+ 
Sbjct: 126 GYVEVR 131


>gi|86739253|ref|YP_479653.1| NADH dehydrogenase subunit C [Frankia sp. CcI3]
 gi|86566115|gb|ABD09924.1| NADH dehydrogenase subunit C [Frankia sp. CcI3]
          Length = 236

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 54/141 (38%), Positives = 77/141 (54%), Gaps = 3/141 (2%)

Query: 15  SFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSR--SNRF 72
               +V   V   GEL++ V    LV++   LRDDP   F  +  L GVD+       R 
Sbjct: 76  QLGDAVERVVVDRGELTVHVRRESLVAVGQTLRDDPDLRFELLSSLSGVDYPDDVTGRRL 135

Query: 73  DVVYHFLSPKYNRRLRVKIA-VAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLR 131
             V H  S  + RR+RV+++      +VPS+  ++P ADW ERE +DM+GI + GHP L 
Sbjct: 136 HSVAHLTSMTHRRRVRVEVSVTDADPTVPSLTSVWPTADWHERETYDMFGIVYTGHPGLT 195

Query: 132 RILTDYGFEGHPLRKDFPVTG 152
           RI+    + GHP RKD+P+ G
Sbjct: 196 RIMMPDDWIGHPQRKDYPLGG 216


>gi|312200065|ref|YP_004020126.1| NADH (or F420H2) dehydrogenase, subunit C [Frankia sp. EuI1c]
 gi|311231401|gb|ADP84256.1| NADH (or F420H2) dehydrogenase, subunit C [Frankia sp. EuI1c]
          Length = 229

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 52/140 (37%), Positives = 76/140 (54%), Gaps = 3/140 (2%)

Query: 16  FSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSR--SNRFD 73
              ++   V   GEL+L V    L+ +   LRDDP   F  +  L G D+       R  
Sbjct: 70  LDEAIELVVVDRGELTLHVRRERLLDVARTLRDDPALRFELLSSLSGADYPDDPSGRRLH 129

Query: 74  VVYHFLSPKYNRRLRVKIAVAEGKS-VPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRR 132
            V H LS  + RR+RV+++V+     +PS+  ++P ADW ERE +D +GI +EGH  L R
Sbjct: 130 SVAHLLSLTHRRRIRVEVSVSVEDPTMPSLTPVWPTADWHERETYDFFGIVYEGHHALTR 189

Query: 133 ILTDYGFEGHPLRKDFPVTG 152
           I+    + GHP RKD+P+ G
Sbjct: 190 IMMPDDWIGHPQRKDYPLGG 209


>gi|42524475|ref|NP_969855.1| NADH dehydrogenase I,D subunit [Bdellovibrio bacteriovorus HD100]
 gi|81616435|sp|Q6MIR5|NUOCD_BDEBA RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
           Full=NADH dehydrogenase I subunit C/D; AltName:
           Full=NDH-1 subunit C/D; AltName: Full=NUO3/NUO4
 gi|39576684|emb|CAE80848.1| NADH dehydrogenase I,D subunit [Bdellovibrio bacteriovorus HD100]
          Length = 560

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 65/150 (43%), Positives = 92/150 (61%), Gaps = 6/150 (4%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSV--GELSLDVDCGDLVSLCSFLRDDPHCCFVNIID 59
           + K+E+L   +   F   +     +   G+  ++V   D  +L  FLR      F  ++D
Sbjct: 1   MNKLENLKQLLAGKF--KIENFKFTHAVGDDVIEVPKEDAPALLLFLR--ESGQFDFLMD 56

Query: 60  LCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDM 119
           +CG D+ SR  RFDVVY+  + K + RLRVK  V EG+S+ + +  Y GADWFERE +DM
Sbjct: 57  VCGADYPSREKRFDVVYNLFNSKDSSRLRVKAQVGEGESIGTAIPAYRGADWFEREAYDM 116

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFP 149
           +GI FEGHP+LR+ILT + F GHPLRKD+ 
Sbjct: 117 FGIIFEGHPNLRKILTHHQFVGHPLRKDYD 146


>gi|296169190|ref|ZP_06850843.1| NADH-quinone oxidoreductase subunit C/D [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295896088|gb|EFG75755.1| NADH-quinone oxidoreductase subunit C/D [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 235

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 54/162 (33%), Positives = 81/162 (50%), Gaps = 6/162 (3%)

Query: 6   EDLGDYIVN---SFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
           + L + +      FS ++   V    EL+L V    L  +   LRDDP   F   + + G
Sbjct: 64  DKLAEALKGAGVEFSDAIEKVVVYRDELTLHVRREALPGVAQHLRDDPDLRFEMCLGVSG 123

Query: 63  VDFL-SRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKS-VPSIVGIYPGADWFEREVWDMY 120
           V +          VY   S  +NRR+R+++A  +G   +PS+  +YP  DW ERE +D +
Sbjct: 124 VHYPHETGRELHAVYPLQSITHNRRVRLEVAAPDGDPHIPSLYKVYPTTDWHERETYDFF 183

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKV 162
           GI F+GHP L RI     + GHP RKD+P+ G + + Y    
Sbjct: 184 GIIFDGHPSLTRIEMPDDWHGHPQRKDYPLGG-IPVEYKGAQ 224


>gi|297625730|ref|YP_003687493.1| NADH-quinone oxidoreductase chain C (NADH dehydrogenase I, chain C)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296921495|emb|CBL56049.1| NADH-quinone oxidoreductase chain C (NADH dehydrogenase I, chain C)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 255

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 57/149 (38%), Positives = 85/149 (57%), Gaps = 2/149 (1%)

Query: 6   EDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDF 65
           +D+ D +     G     +   GE++  VD   L+ L   LRDD    F   + + GV +
Sbjct: 86  DDVADRMAELVPGFATRVMVHRGEITFFVDRDKLLELAKHLRDDEALRFEICVSVSGVHY 145

Query: 66  LSR-SNRFDVVYHFLSPKYNRRLRVKIAVAEGKS-VPSIVGIYPGADWFEREVWDMYGIF 123
             +  +    V+H LS  YNRR+R+++ V+E    +PS+V +YP A++ ERE WDM+GI 
Sbjct: 146 PEQTGHELHAVFHLLSMTYNRRIRLEVEVSEDDPHLPSLVPVYPMANFHERETWDMFGII 205

Query: 124 FEGHPDLRRILTDYGFEGHPLRKDFPVTG 152
           F+GHP L RIL    + GHP RKD+P+ G
Sbjct: 206 FDGHPALTRILMPDDWVGHPQRKDYPLGG 234


>gi|328953789|ref|YP_004371123.1| NAD(P)H-quinone oxidoreductase subunit J [Desulfobacca acetoxidans
           DSM 11109]
 gi|328454113|gb|AEB09942.1| NAD(P)H-quinone oxidoreductase subunit J [Desulfobacca acetoxidans
           DSM 11109]
          Length = 152

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 58/147 (39%), Positives = 79/147 (53%), Gaps = 3/147 (2%)

Query: 10  DYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRS 69
           + +   F   +       G+ ++ V    LV +C FLRDDP   F  +  + GVD+   S
Sbjct: 6   NKLQAQFPDEIVDVYEFRGDATVTVKPEKLVEICEFLRDDPETSFRYLSSVSGVDYHPAS 65

Query: 70  NRFDVVYHFLSPKYNRRLRVKIAVAEGKSV--PSIVGIYPGADWFEREVWDMYGIFFEGH 127
            RF   YH  S +   R+ +K   A   +   PS+V ++  ADW ERE +D+ GI F GH
Sbjct: 66  PRFAATYHLYSHQNRNRIALKAFCANDDAPALPSVVSVWSTADWHEREAYDLVGIKFSGH 125

Query: 128 PDLRRILTDYGFEG-HPLRKDFPVTGF 153
           PDLRRILT    EG HPLRKD+P  G+
Sbjct: 126 PDLRRILTPPECEGYHPLRKDYPQEGY 152


>gi|297201625|ref|ZP_06919022.1| NADH dehydrogenase subunit C [Streptomyces sviceus ATCC 29083]
 gi|197711004|gb|EDY55038.1| NADH dehydrogenase subunit C [Streptomyces sviceus ATCC 29083]
          Length = 247

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 86/166 (51%), Gaps = 10/166 (6%)

Query: 6   EDLGDYIVNSF-------SGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNII 58
           +++ D +  +          ++   V   GE++  ++   L+ +   LRDDP   F    
Sbjct: 72  DEVADELEGALEEQGLLPGNAIEKTVVDRGEITFHIEREHLLRVAQTLRDDPALRFELCT 131

Query: 59  DLCGVDFLSRSNR-FDVVYHFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREV 116
            + GV +L    R    VYH  S  +NR +R++++  +    +PS+V +YP  DW ERE 
Sbjct: 132 GVSGVHYLHDKGRELHAVYHLRSITHNRLIRLEVSAPDADPHIPSLVSVYPTNDWHERET 191

Query: 117 WDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKV 162
           +D +GI F+GHP L RI+    ++GHP RKD+P+ G + + Y    
Sbjct: 192 YDFFGIVFDGHPALTRIMMPDDWQGHPQRKDYPLGG-IPVEYKGAQ 236


>gi|255708964|gb|ACU30387.1| NADH dehydrogenase subunit 9 [Silene conoidea]
          Length = 131

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 63/126 (50%), Positives = 90/126 (71%)

Query: 32  LDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKI 91
            D     +  L  FL+   +  +  ++D+CGVD+ SR+ RF+VVY+ LS ++N R+RV+ 
Sbjct: 6   FDTTKDFVFQLLCFLKLHSYTRYEVLVDICGVDYPSRNLRFEVVYNLLSTRFNSRIRVQT 65

Query: 92  AVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVT 151
           +    + +PS+V ++P A+W ERE WDM+GI F  HPDLRRILTDYGFEGHPLRKDFP++
Sbjct: 66  SADAVRRIPSVVSLFPSANWCEREAWDMFGISFINHPDLRRILTDYGFEGHPLRKDFPLS 125

Query: 152 GFVELH 157
           G+VE+ 
Sbjct: 126 GYVEVR 131


>gi|145225062|ref|YP_001135740.1| NADH dehydrogenase subunit C [Mycobacterium gilvum PYR-GCK]
 gi|218534313|sp|A4TDC0|NUOC_MYCGI RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|145217548|gb|ABP46952.1| NADH dehydrogenase subunit C [Mycobacterium gilvum PYR-GCK]
          Length = 226

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 54/153 (35%), Positives = 84/153 (54%), Gaps = 3/153 (1%)

Query: 3   RKIEDLGDYI-VNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
             ++ L + +  ++F+ S+   V    EL+L+V    LV +   LRDDP   F   + + 
Sbjct: 54  EVVDRLAEAVGDDAFTESIERVVIHRDELTLEVHRDRLVEVAQALRDDPALRFELCLGVS 113

Query: 62  GVDFLSR-SNRFDVVYHFLSPKYNRRLRVKIAVAEGKS-VPSIVGIYPGADWFEREVWDM 119
           GV +           Y  +S  +NRR+R+++AV +    +PS+ G+YP  DW ERE +D 
Sbjct: 114 GVHYPDDTGRELHAAYPLMSITHNRRIRLEVAVPDDDPHIPSLFGVYPTVDWHERETYDF 173

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTG 152
           +GI F+GHP L RI     + GHP RKD+P+ G
Sbjct: 174 FGIIFDGHPSLTRIEMPDDWVGHPQRKDYPLGG 206


>gi|257054394|ref|YP_003132226.1| NADH dehydrogenase subunit C [Saccharomonospora viridis DSM 43017]
 gi|256584266|gb|ACU95399.1| NADH dehydrogenase subunit C [Saccharomonospora viridis DSM 43017]
          Length = 253

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 57/137 (41%), Positives = 78/137 (56%), Gaps = 2/137 (1%)

Query: 18  GSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFL-SRSNRFDVVY 76
            +++      GE++  V    LV +C  LRDD    F     + GVD+      R   VY
Sbjct: 97  DAIQQVTIDRGEITFYVQREYLVDICRTLRDDEGLRFELCNSVSGVDYGVDVPQRLHSVY 156

Query: 77  HFLSPKYNRRLRVKIAVAEGKS-VPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILT 135
           H  S  Y RR+R+++AV      +PSIV +YP ADW ERE +DM+GI ++GHP L RIL 
Sbjct: 157 HLTSMTYRRRIRLEVAVDVDDPHIPSIVDVYPTADWQEREAYDMFGIIYDGHPALTRILM 216

Query: 136 DYGFEGHPLRKDFPVTG 152
              +EGHP RKD+P+ G
Sbjct: 217 PDDWEGHPQRKDYPLGG 233


>gi|289769832|ref|ZP_06529210.1| trifunctional NADH dehydrogenase I subunit B/C/D [Streptomyces
           lividans TK24]
 gi|289700031|gb|EFD67460.1| trifunctional NADH dehydrogenase I subunit B/C/D [Streptomyces
           lividans TK24]
          Length = 340

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 6/162 (3%)

Query: 6   EDLGDYIVNS--FSG-SVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
           ++L   +         ++   V   GEL+  ++   LV +   LRDDP   F     + G
Sbjct: 169 DELEGALEEQGLLPDNAIEKTVVDRGELTFHIEREHLVRVARTLRDDPALRFELCTGVSG 228

Query: 63  VDFLSRSNR-FDVVYHFLSPKYNRRLRVKIAVAEGKS-VPSIVGIYPGADWFEREVWDMY 120
           V +     R    VYH  S  +NR +R++++  +G   +PS+V +YP  DW ERE +D +
Sbjct: 229 VHYPHDKGRELHAVYHLRSITHNRLIRLEVSAPDGDPHIPSLVSVYPTNDWHERETYDFF 288

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKV 162
           GI F+ HP L RI+    ++G P RKD+P+ G + + Y    
Sbjct: 289 GIVFDDHPALTRIMMPDDWQGFPQRKDYPLGG-IPVEYKGAQ 329


>gi|258593433|emb|CBE69772.1| NADH-quinone oxidoreductase [NC10 bacterium 'Dutch sediment']
          Length = 168

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 63/140 (45%), Positives = 88/140 (62%)

Query: 10  DYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRS 69
             +   F  +     +   E +L V  GDL+  C +L++DP   +  + DL  VD     
Sbjct: 14  SRLRERFPEATFSTRSFRNETTLLVRLGDLIRFCRYLKEDPGLLYDFLSDLTAVDRFGDH 73

Query: 70  NRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPD 129
            RF+VVYH  S +Y +R+R+K+ V EG++VPS+  ++  ADW EREV+DM+GI FEGHPD
Sbjct: 74  PRFEVVYHLYSLQYKQRIRLKVHVEEGEAVPSVTTVWGVADWHEREVFDMFGIRFEGHPD 133

Query: 130 LRRILTDYGFEGHPLRKDFP 149
           LRRIL   G+EG PLRKD+P
Sbjct: 134 LRRILMPEGWEGCPLRKDYP 153


>gi|328925346|gb|AEB66292.1| NADH dehydrogenase subunit 9 [Silene coniflora]
          Length = 136

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 66/128 (51%), Positives = 93/128 (72%)

Query: 32  LDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKI 91
            D     +  L SFL+   +  +  ++D+CGVD+ SRS RF+VVY+ LS ++N R+ V+ 
Sbjct: 9   FDTTTDFVFQLLSFLKLHSYTRYEVLVDICGVDYPSRSLRFEVVYNLLSTRFNSRISVQT 68

Query: 92  AVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVT 151
           +  E + +PS V ++P A+W ERE+WDM+GI F  HPDLRRILTDYGFEGHPLRKDFP++
Sbjct: 69  SADEVRRIPSAVSLFPSANWCEREIWDMFGISFINHPDLRRILTDYGFEGHPLRKDFPLS 128

Query: 152 GFVELHYD 159
           G++E+ YD
Sbjct: 129 GYIEVRYD 136


>gi|328925348|gb|AEB66293.1| NADH dehydrogenase subunit 9 [Silene coniflora]
          Length = 136

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 66/128 (51%), Positives = 93/128 (72%)

Query: 32  LDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKI 91
            D     +  L SFL+   +  +  ++D+CGVD+ SRS RF+VVY+ LS ++N R+ V+ 
Sbjct: 9   FDTTTDFVFQLLSFLKLHSYTRYEVLVDICGVDYPSRSLRFEVVYNLLSTRFNSRISVQT 68

Query: 92  AVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVT 151
           +  E + +PS V ++P A+W ERE+WDM+GI F  HPDLRRILTDYGFEGHPLRKDFP++
Sbjct: 69  SADEVRRIPSAVSLFPSANWCEREIWDMFGISFINHPDLRRILTDYGFEGHPLRKDFPLS 128

Query: 152 GFVELHYD 159
           G++E+ YD
Sbjct: 129 GYIEVRYD 136


>gi|315445431|ref|YP_004078310.1| NADH dehydrogenase subunit C [Mycobacterium sp. Spyr1]
 gi|315263734|gb|ADU00476.1| NADH dehydrogenase subunit C [Mycobacterium sp. Spyr1]
          Length = 226

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 55/153 (35%), Positives = 84/153 (54%), Gaps = 3/153 (1%)

Query: 3   RKIEDLGDYI-VNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
             ++ L + +  ++F+ S+   V    EL+L+V    LV +   LRDDP   F   + + 
Sbjct: 54  EVVDRLAEAVGDDAFTESIERVVIHRDELTLEVHRDRLVEVAQALRDDPALRFELCLGVS 113

Query: 62  GVDFLSR-SNRFDVVYHFLSPKYNRRLRVKIAVAEGKS-VPSIVGIYPGADWFEREVWDM 119
           GV +           Y  +S  +NRR+RV++AV +    +PS+ G+YP  DW ERE +D 
Sbjct: 114 GVHYPDDTGRELHAAYPLMSITHNRRIRVEVAVPDDDPHIPSLFGVYPTVDWHERETYDF 173

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTG 152
           +GI F+GHP L RI     + GHP RKD+P+ G
Sbjct: 174 FGIIFDGHPSLTRIEMPDDWVGHPQRKDYPLGG 206


>gi|39995449|ref|NP_951400.1| NADH dehydrogenase I subunit C [Geobacter sulfurreducens PCA]
 gi|81703476|sp|Q74GA6|NUOC_GEOSL RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|39982212|gb|AAR33673.1| NADH dehydrogenase I, C subunit [Geobacter sulfurreducens PCA]
 gi|298504448|gb|ADI83171.1| NADH dehydrogenase I, C subunit [Geobacter sulfurreducens KN400]
          Length = 162

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 53/160 (33%), Positives = 78/160 (48%), Gaps = 5/160 (3%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M      +   +   F+ S+       GE+++ V    +V +C FL+      +    D+
Sbjct: 1   MAENNRAVIK-LKEKFAASILDVREFRGEVTVTVAREKVVDICRFLK--ESLQYNLCTDV 57

Query: 61  CGVDFLS-RSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGI-YPGADWFEREVWD 118
             VD+L  +  RF VVY+  S     RLR+K  V +       V   +  A+W EREV+D
Sbjct: 58  TAVDYLGKQEPRFMVVYNLYSIPNKDRLRLKAGVPDADCSIDTVSCVWNSANWLEREVYD 117

Query: 119 MYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHY 158
           + G+ F  HPDLRRIL    + GHPLRKD+P+ G     Y
Sbjct: 118 LMGVQFNNHPDLRRILMTDDWVGHPLRKDYPLQGPDREPY 157


>gi|239929612|ref|ZP_04686565.1| NADH dehydrogenase subunit C [Streptomyces ghanaensis ATCC 14672]
 gi|291437936|ref|ZP_06577326.1| NuoC [Streptomyces ghanaensis ATCC 14672]
 gi|291340831|gb|EFE67787.1| NuoC [Streptomyces ghanaensis ATCC 14672]
          Length = 246

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 84/166 (50%), Gaps = 10/166 (6%)

Query: 6   EDLGDYIVNSF-------SGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNII 58
           +++ D +  +          ++   V   GEL+  ++   LV +   LRDDP   F    
Sbjct: 71  DEVADELEGALEEQGLLPGNAIEKTVVDRGELTFHIEREHLVRVARTLRDDPALRFELCT 130

Query: 59  DLCGVDFL-SRSNRFDVVYHFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREV 116
            + GV +   +      VYH  S  +NR +R++++  +    +PS+  +YP  DW ERE 
Sbjct: 131 GVSGVHYPNDKGRELHAVYHLRSITHNRLIRLEVSAPDSDPHIPSLFPVYPTNDWHERET 190

Query: 117 WDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKV 162
           +D +GI F+GHP L RI+    ++GHP RKD+P+ G + + Y    
Sbjct: 191 YDFFGIVFDGHPALTRIMMPDDWQGHPQRKDYPLGG-IPVEYKGAQ 235


>gi|319950453|ref|ZP_08024367.1| NADH dehydrogenase subunit C [Dietzia cinnamea P4]
 gi|319435876|gb|EFV91082.1| NADH dehydrogenase subunit C [Dietzia cinnamea P4]
          Length = 259

 Score =  138 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 52/159 (32%), Positives = 79/159 (49%), Gaps = 9/159 (5%)

Query: 14  NSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLS-RSNRF 72
            SF+ +V   V   G+L+L V    L ++   LRDDP   F   +   GV +        
Sbjct: 99  ASFAEAVERVVVHCGQLTLHVVREHLPAVALALRDDPDLRFEMSLGASGVHYPGATGREL 158

Query: 73  DVVYHFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLR 131
            VVY   S  +NRR+ ++    +    VP++  +YP  DW ERE +D +G+ F+GHP L 
Sbjct: 159 HVVYPLQSITHNRRVMLETWAPDADPHVPTLTRVYPTTDWHERETYDFFGVIFDGHPSLT 218

Query: 132 RILTDYGFEGHPLRKDFPVTGFVELHYD------DKVKK 164
           RI     +EGHP RKD+P+ G + + Y          ++
Sbjct: 219 RIEMPDDWEGHPQRKDYPLGG-IAVQYKGATIPPPDQRR 256


>gi|254821136|ref|ZP_05226137.1| NADH dehydrogenase subunit C [Mycobacterium intracellulare ATCC
           13950]
          Length = 235

 Score =  138 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 52/160 (32%), Positives = 80/160 (50%), Gaps = 6/160 (3%)

Query: 8   LGDYIVN---SFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD 64
           L + +      F+ ++   V    EL+L V    L  +   LRD+P   F   + + GV 
Sbjct: 66  LAEALKKGGVEFTDAIEKVVVYRNELTLHVRREALPQVAQRLRDEPQLRFEMCLGVSGVH 125

Query: 65  FL-SRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKS-VPSIVGIYPGADWFEREVWDMYGI 122
           +          VY   S  +NRR+R++++  +    +PS+ GIYP  DW ERE +D +GI
Sbjct: 126 YPHEAGRELHAVYPLQSITHNRRVRLEVSAPDDDPHIPSLFGIYPTTDWHERETYDFFGI 185

Query: 123 FFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKV 162
            F+GHP L RI     + GHP RKD+P+ G + + Y    
Sbjct: 186 IFDGHPSLTRIEMPDDWHGHPQRKDYPLGG-IPVEYKGAQ 224


>gi|149280568|ref|ZP_01886684.1| NADH dehydrogenase I chain C [Pedobacter sp. BAL39]
 gi|149228683|gb|EDM34086.1| NADH dehydrogenase I chain C [Pedobacter sp. BAL39]
          Length = 167

 Score =  138 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 2/158 (1%)

Query: 1   MVR-KIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIID 59
           M     ++L   +   F G +       G L+ +     ++++ +FL+++    F  + D
Sbjct: 1   MAEVTNQELVQALTEKFGGQIIGVNEPYGLLTFETHKDSIINVLTFLKENSIANFNFLTD 60

Query: 60  LCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSI-VGIYPGADWFEREVWD 118
           +  V +  + +   VVYH  S     R+RVK+ + E          ++  A+W ERE +D
Sbjct: 61  ITAVHYPEKKHGIAVVYHLHSMVKRIRVRVKVFIDENHPTIPTATTLWNAANWMERETYD 120

Query: 119 MYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVEL 156
            +G+ FEGHPDLRRIL       HP+ K +P+     +
Sbjct: 121 FFGVRFEGHPDLRRILNMDELGVHPMLKQYPLEDPNRV 158


>gi|284106848|ref|ZP_06386291.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Candidatus
           Poribacteria sp. WGA-A3]
 gi|283830027|gb|EFC34303.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Candidatus
           Poribacteria sp. WGA-A3]
          Length = 583

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 64/152 (42%), Positives = 89/152 (58%), Gaps = 4/152 (2%)

Query: 5   IEDLGDYIVNSFSGSVRFAVNS--VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
           +  + + +   F  +V         G+LS  V   DLV +  FL DDP   F ++ D+C 
Sbjct: 1   MHRVLETLHERFPEAVLSVREDPQRGDLSAQVRAQDLVEVARFLHDDPGMAFDHLTDICS 60

Query: 63  VDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV-PSIVGIYPGADWFEREVWDMYG 121
            D+     RF+V+YHFLS  +N R+R+K  V E +    ++  I+ GA++ EREV+D+ G
Sbjct: 61  ADYPDDLERFEVIYHFLSLPHNTRIRLKTRVTEEQPTLGTVTSIWKGANFLEREVYDLMG 120

Query: 122 IFFEGHPDLRRILTDYGF-EGHPLRKDFPVTG 152
           I FEGHPDLRRIL    + EGHPLRKDFP  G
Sbjct: 121 ITFEGHPDLRRILLPEDYEEGHPLRKDFPTEG 152


>gi|229490832|ref|ZP_04384667.1| NADH-quinone oxidoreductase subunit c [Rhodococcus erythropolis
           SK121]
 gi|229322222|gb|EEN88008.1| NADH-quinone oxidoreductase subunit c [Rhodococcus erythropolis
           SK121]
          Length = 220

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 53/151 (35%), Positives = 83/151 (54%), Gaps = 3/151 (1%)

Query: 14  NSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFL-SRSNRF 72
           ++F+ ++   V    E++L V+   L  +   LRD+    F   + + GV +        
Sbjct: 60  STFTDAIERVVIFRDEMTLHVERSHLPQVARRLRDESELRFELCLGVDGVHYPQDTGREL 119

Query: 73  DVVYHFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLR 131
             VY F S  +NRR+R++++V +    +PSIVGIYP  DW ERE +D +GI F+GHP L 
Sbjct: 120 HAVYPFASITHNRRIRLEVSVPDSDPHIPSIVGIYPTNDWHERETYDFFGIVFDGHPALT 179

Query: 132 RILTDYGFEGHPLRKDFPVTGFVELHYDDKV 162
           RI     ++GHP RKD+P+ G + + Y    
Sbjct: 180 RIEMPDDWKGHPQRKDYPLGG-IPVEYKGAQ 209


>gi|298346120|ref|YP_003718807.1| NADH dehydrogenase subunit C [Mobiluncus curtisii ATCC 43063]
 gi|298236181|gb|ADI67313.1| NADH dehydrogenase subunit C [Mobiluncus curtisii ATCC 43063]
          Length = 246

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 56/137 (40%), Positives = 75/137 (54%), Gaps = 2/137 (1%)

Query: 18  GSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSR-SNRFDVVY 76
            ++   V S GEL++ V    LV++   LRDD    F   + + GV +          VY
Sbjct: 90  TAIDRVVVSHGELTIHVAREHLVTVAKALRDDQDLRFELCMGVSGVHYPHDTGQELHAVY 149

Query: 77  HFLSPKYNRRLRVKIAVAEGKS-VPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILT 135
           HF+S  +N  LR++ A  E    +PSIV IYPG +W ERE +DM GI F GHP L R L 
Sbjct: 150 HFISVTHNHNLRIETAAPEDDPKIPSIVDIYPGNNWHEREAFDMMGIIFTGHPALTRSLL 209

Query: 136 DYGFEGHPLRKDFPVTG 152
              + GHP RKD+P+ G
Sbjct: 210 PDDWVGHPQRKDYPLGG 226


>gi|72163092|ref|YP_290749.1| NADH dehydrogenase subunit C [Thermobifida fusca YX]
 gi|71916824|gb|AAZ56726.1| NADH (or F420H2) dehydrogenase, subunit C [Thermobifida fusca YX]
          Length = 252

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 53/159 (33%), Positives = 79/159 (49%), Gaps = 3/159 (1%)

Query: 2   VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
              +E     I   +  ++   V   GE++  V    L+ + + LRDDP   F   + + 
Sbjct: 80  ADALERSLKEIGTPYDTAISRVVVDRGEITFHVQREHLLDVATRLRDDPALRFELCLGVT 139

Query: 62  GVDFLSRS-NRFDVVYHFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDM 119
           GV +     N    VY   S  +N  +R++++  +    +PSIV +YP  DW ERE WD 
Sbjct: 140 GVHYPEDEGNELHAVYALRSITHNYEIRLEVSCPDSDPHIPSIVSVYPTNDWHEREAWDF 199

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTG-FVELH 157
           +GI F+GHP L RI     + GHP RKD+P+ G  VE  
Sbjct: 200 FGIIFDGHPALTRIHMPDDWHGHPQRKDYPLGGIPVEYR 238


>gi|206891118|ref|YP_002248946.1| NADH-quinone oxidoreductase chain c 2 [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206743056|gb|ACI22113.1| NADH-quinone oxidoreductase chain c 2 [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 201

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 51/147 (34%), Positives = 80/147 (54%), Gaps = 3/147 (2%)

Query: 7   DLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFL 66
            +   +   F   V       G++S+ V    +  +  +L++     F ++ DLCGVD+ 
Sbjct: 37  KIAYKLKEQFPEEVIEIKEFRGQVSVIVKSNKIKEILKYLKNQQ--GFNHLQDLCGVDYS 94

Query: 67  SRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKS-VPSIVGIYPGADWFEREVWDMYGIFFE 125
               RF++VY+  S      +RV+  V E    + S+  ++ GA+W ERE +DM+GI F 
Sbjct: 95  PEKPRFEIVYNLYSIWRRLHIRVRAKVNEETPELDSVTDLWEGANWHERECFDMFGIRFI 154

Query: 126 GHPDLRRILTDYGFEGHPLRKDFPVTG 152
           GHPDLRRIL    + G+PLRKD+P+ G
Sbjct: 155 GHPDLRRILMPEDWNGYPLRKDYPLKG 181


>gi|328884314|emb|CCA57553.1| NADH-ubiquinone oxidoreductase chain C [Streptomyces venezuelae
           ATCC 10712]
          Length = 243

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 6/162 (3%)

Query: 6   EDLGDYIVNS--FSG-SVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
           ++L   +         ++   V   GEL+  ++   LV +   LRDDP   F     + G
Sbjct: 72  DELEGALEEQGLLPDNAIEKTVVDRGELTFHIEREHLVRVARTLRDDPALRFELCTGVSG 131

Query: 63  VDFLSRSNR-FDVVYHFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMY 120
           V +     R    VYH  S  + R +R++++  +    +PS+V +YP  DW ERE +D +
Sbjct: 132 VHYPGDKGRELHAVYHLRSLTHGRLIRLEVSAPDADPHIPSLVAVYPTNDWHEREAYDFF 191

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKV 162
           GI F+GHP L RI+    ++GHP RKD+P+ G + + Y    
Sbjct: 192 GIVFDGHPALTRIMMPDDWQGHPQRKDYPLGG-IAVEYKGAQ 232


>gi|296140853|ref|YP_003648096.1| NADH (or F420H2) dehydrogenase, subunit C [Tsukamurella
           paurometabola DSM 20162]
 gi|296028987|gb|ADG79757.1| NADH (or F420H2) dehydrogenase, subunit C [Tsukamurella
           paurometabola DSM 20162]
          Length = 236

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 52/139 (37%), Positives = 75/139 (53%), Gaps = 2/139 (1%)

Query: 16  FSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSR-SNRFDV 74
           F+ +VR  V   GE++L V    +V++   LRDDP   F   +   GV F          
Sbjct: 78  FAEAVRSVVVHRGEVTLRVPRQHVVAVARLLRDDPSLRFEMCLGTSGVHFPEDTGAELRA 137

Query: 75  VYHFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRI 133
           V H  S  + RRLR++    +    +PS++ +YP  DW ERE +D +GI F+GHP L RI
Sbjct: 138 VTHLQSITWGRRLRLETHCPQADPHIPSLISVYPTVDWHERETFDFFGIVFDGHPSLTRI 197

Query: 134 LTDYGFEGHPLRKDFPVTG 152
                ++GHP RKD+P+ G
Sbjct: 198 EMPDDWDGHPQRKDYPLGG 216


>gi|329944204|ref|ZP_08292463.1| NADH dehydrogenase, C subunit [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328530934|gb|EGF57790.1| NADH dehydrogenase, C subunit [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 261

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 50/147 (34%), Positives = 72/147 (48%), Gaps = 4/147 (2%)

Query: 19  SVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLS-RSNRFDVVYH 77
           ++   V    EL+L +    L+ +   LRDD    F   + + GV +             
Sbjct: 105 AIEKVVIEHDELTLFIAREHLLDVVRPLRDDQDLRFELCLGVSGVHYPQLAGRELHACIE 164

Query: 78  FLSPKYNRR-LRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILT 135
            +S  +  R LR+++A  E    VPSIV +YPG DW ERE WD+ GI F+GHP L R   
Sbjct: 165 LMSLTHGGRQLRLQVACPETDPHVPSIVSVYPGNDWHERETWDLMGIVFDGHPHLTRTAM 224

Query: 136 DYGFEGHPLRKDFPVTGFVELHYDDKV 162
              + GHP RKD+P+ G + + Y    
Sbjct: 225 PDDWVGHPQRKDYPLGG-IPVEYKGAQ 250


>gi|320532541|ref|ZP_08033351.1| NADH dehydrogenase, subunit C [Actinomyces sp. oral taxon 171 str.
           F0337]
 gi|320135246|gb|EFW27384.1| NADH dehydrogenase, subunit C [Actinomyces sp. oral taxon 171 str.
           F0337]
          Length = 261

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 4/147 (2%)

Query: 19  SVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLS-RSNRFDVVYH 77
           ++   V    EL+L +    L+ +   LRDD    F   + + GV +             
Sbjct: 105 AIEKVVIEHDELTLFIAREHLLDVARPLRDDQDLRFELCLGVSGVHYPELTGRELHACIQ 164

Query: 78  FLSPKYNRR-LRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILT 135
            +S  +  R LR+++A  +    VPS+V +YPG DW ERE WD+ GI F+GHP L R   
Sbjct: 165 LMSLTHGGRQLRLQVACPDSDPHVPSLVSLYPGNDWHERETWDLMGIVFDGHPHLTRTAM 224

Query: 136 DYGFEGHPLRKDFPVTGFVELHYDDKV 162
              + GHP RKD+P+ G + + Y    
Sbjct: 225 PDDWVGHPQRKDYPLGG-IPVEYKGAQ 250


>gi|304390120|ref|ZP_07372074.1| NADH-quinone oxidoreductase subunit C [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304326602|gb|EFL93846.1| NADH-quinone oxidoreductase subunit C [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 246

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 56/137 (40%), Positives = 75/137 (54%), Gaps = 2/137 (1%)

Query: 18  GSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSR-SNRFDVVY 76
            ++   V S GEL++ V    LV++   LRDD    F   + + GV +          VY
Sbjct: 90  TAIDRVVVSHGELTIHVAREHLVTVAKALRDDQDLRFELCMGVSGVHYPHDTGQELHAVY 149

Query: 77  HFLSPKYNRRLRVKIAVAEGKS-VPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILT 135
           HF+S  +N  LR++ A  E    +PSIV IYPG +W ERE +DM GI F GHP L R L 
Sbjct: 150 HFISVTHNHNLRIETAAPEDDPKIPSIVDIYPGNNWHEREAFDMMGIIFTGHPALTRSLL 209

Query: 136 DYGFEGHPLRKDFPVTG 152
              + GHP RKD+P+ G
Sbjct: 210 PDDWVGHPQRKDYPLGG 226


>gi|315654699|ref|ZP_07907605.1| NADH-quinone oxidoreductase subunit C [Mobiluncus curtisii ATCC
           51333]
 gi|315491163|gb|EFU80782.1| NADH-quinone oxidoreductase subunit C [Mobiluncus curtisii ATCC
           51333]
          Length = 246

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 58/152 (38%), Positives = 78/152 (51%), Gaps = 9/152 (5%)

Query: 10  DYIVNSF-------SGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
           DY+             ++   V S GEL++ V    LV++   LRDD    F   + + G
Sbjct: 75  DYLEEDLRGAGVDPHTAIDRVVVSHGELTIHVAREHLVTVAKALRDDQDLRFELCMGVSG 134

Query: 63  VDFLSR-SNRFDVVYHFLSPKYNRRLRVKIAVAEGKS-VPSIVGIYPGADWFEREVWDMY 120
           V +          VYHF+S  +N  LR++ A  E    +PSIV IYPG +W ERE +DM 
Sbjct: 135 VHYPHDTGQELHAVYHFISVTHNHNLRIETAAPEDDPKIPSIVDIYPGNNWHEREAFDMM 194

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTG 152
           GI F GHP L R L    + GHP RKD+P+ G
Sbjct: 195 GIIFTGHPALTRSLLPDDWVGHPQRKDYPLGG 226


>gi|315657377|ref|ZP_07910259.1| NADH-quinone oxidoreductase subunit C [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315491849|gb|EFU81458.1| NADH-quinone oxidoreductase subunit C [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 246

 Score =  137 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 59/152 (38%), Positives = 78/152 (51%), Gaps = 9/152 (5%)

Query: 10  DYIVNSF-------SGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
           DY+             ++   V S GEL++ V    LV++   LRDD    F   + + G
Sbjct: 75  DYLEEDLRGAGVDPHTAIDRVVVSHGELTIHVAREHLVTVAKALRDDQDLRFELCMGVSG 134

Query: 63  VDFLSR-SNRFDVVYHFLSPKYNRRLRVKIAVAEGKS-VPSIVGIYPGADWFEREVWDMY 120
           V +          VYHF+S  +N  LR++ A  E    VPSIV IYPG +W ERE +DM 
Sbjct: 135 VHYPHDTGQELHAVYHFISVTHNHNLRIETAAPEDDPKVPSIVDIYPGNNWHEREAFDMM 194

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTG 152
           GI F GHP L R L    + GHP RKD+P+ G
Sbjct: 195 GIIFTGHPALTRSLLPDDWVGHPQRKDYPLGG 226


>gi|326772150|ref|ZP_08231435.1| NADH dehydrogenase I, C subunit [Actinomyces viscosus C505]
 gi|326638283|gb|EGE39184.1| NADH dehydrogenase I, C subunit [Actinomyces viscosus C505]
          Length = 258

 Score =  137 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 50/147 (34%), Positives = 73/147 (49%), Gaps = 4/147 (2%)

Query: 19  SVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLS-RSNRFDVVYH 77
           ++   V    EL+L +    L+ +   LRDD    F   + + GV +             
Sbjct: 102 AIEKVVIEHDELTLFIAREHLLDVARPLRDDQDLRFELCLGVSGVHYPELAGRELHACIQ 161

Query: 78  FLSPKYNRR-LRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILT 135
           F+S  +  R LR+++A  E    VPS+V +YPG DW ERE WD+ GI F+GHP L R   
Sbjct: 162 FMSLTHGGRQLRLQVACPETDPHVPSLVSLYPGNDWHERETWDLMGIVFDGHPHLTRTAM 221

Query: 136 DYGFEGHPLRKDFPVTGFVELHYDDKV 162
              + GHP RKD+P+ G + + Y    
Sbjct: 222 PDDWVGHPQRKDYPLGG-IPVEYKGAQ 247


>gi|302543442|ref|ZP_07295784.1| NADH dehydrogenase I, C subunit [Streptomyces hygroscopicus ATCC
           53653]
 gi|302461060|gb|EFL24153.1| NADH dehydrogenase I, C subunit [Streptomyces himastatinicus ATCC
           53653]
          Length = 245

 Score =  137 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 51/162 (31%), Positives = 79/162 (48%), Gaps = 6/162 (3%)

Query: 6   EDLGDYIVNS--FSG-SVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
           ++L   +         ++   V    EL+  +    L  +   LRDDP   F     + G
Sbjct: 74  DELEGALEEQSLLPDNAIEKTVVDRDELTFHIAREHLPRVARTLRDDPALRFELCTGVSG 133

Query: 63  VDFLSRSNR-FDVVYHFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMY 120
           V F     R    VYH  S  +NR +R++++  +    +PSIV +YP  DW ERE +D +
Sbjct: 134 VHFPGDKGRELHAVYHLRSITHNRVIRLEVSAPDSDPHIPSIVDVYPTNDWHERETYDFF 193

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKV 162
           GI F+GHP L RI+    ++G P RKD+P+ G + + Y    
Sbjct: 194 GIVFDGHPALTRIMMPDDWQGFPQRKDYPLGG-IPVEYKGAQ 234


>gi|226306212|ref|YP_002766172.1| NADH-quinone oxidoreductase chain C [Rhodococcus erythropolis PR4]
 gi|226185329|dbj|BAH33433.1| NADH-quinone oxidoreductase chain C [Rhodococcus erythropolis PR4]
          Length = 220

 Score =  137 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 54/149 (36%), Positives = 81/149 (54%), Gaps = 3/149 (2%)

Query: 16  FSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFL-SRSNRFDV 74
           F+ +V   V    E++L V+   L  +   LRD+P   F   + + GV +          
Sbjct: 62  FAAAVERVVIFRDEMTLHVERSHLPQVARRLRDEPDLRFELCLGVDGVHYPQDTGRELHA 121

Query: 75  VYHFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRI 133
           VY   S  +NRR+R++++V +    +PSIVGIYP  DW ERE +D +GI F+GHP L RI
Sbjct: 122 VYPLASITHNRRIRLEVSVPDSDPHIPSIVGIYPTNDWHERETYDFFGIVFDGHPALTRI 181

Query: 134 LTDYGFEGHPLRKDFPVTGFVELHYDDKV 162
                ++GHP RKD+P+ G + + Y    
Sbjct: 182 EMPDDWKGHPQRKDYPLGG-IPVEYKGAQ 209


>gi|325067539|ref|ZP_08126212.1| NADH dehydrogenase subunit C [Actinomyces oris K20]
          Length = 258

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 49/147 (33%), Positives = 72/147 (48%), Gaps = 4/147 (2%)

Query: 19  SVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLS-RSNRFDVVYH 77
           ++   V    EL+L +    L+ +   LRDD    F   + + GV +             
Sbjct: 102 AIEKVVIEHDELTLFIAREHLLDVARPLRDDQDLRFELCLGVSGVHYPELAGRELHACIQ 161

Query: 78  FLSPKYNRR-LRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILT 135
            +S  +  R LR+++A  E    VPS+V +YPG DW ERE WD+ GI F+GHP L R   
Sbjct: 162 LMSLTHGGRQLRLQVACPETDPHVPSLVSLYPGNDWHERETWDLMGIVFDGHPHLTRTAM 221

Query: 136 DYGFEGHPLRKDFPVTGFVELHYDDKV 162
              + GHP RKD+P+ G + + Y    
Sbjct: 222 PDDWVGHPQRKDYPLGG-IPVEYKGAQ 247


>gi|300782453|ref|YP_003762744.1| NADH dehydrogenase I subunit C [Amycolatopsis mediterranei U32]
 gi|299791967|gb|ADJ42342.1| NADH dehydrogenase I subunit C [Amycolatopsis mediterranei U32]
          Length = 249

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 57/137 (41%), Positives = 77/137 (56%), Gaps = 2/137 (1%)

Query: 18  GSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFL-SRSNRFDVVY 76
            ++       GE++  V    L S+   LRDD    F  +  + GVD+      R   VY
Sbjct: 93  EAILQTTVDRGEITFYVAREHLPSIAKTLRDDGGLRFELLSSVSGVDYGVDVPQRLHAVY 152

Query: 77  HFLSPKYNRRLRVKIAVA-EGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILT 135
           HF S  Y RR+R+++ +  E   VPS+V  YP ADW ERE WDM+GI F+GHP L RIL 
Sbjct: 153 HFTSLTYRRRIRLEVTLDVEDAHVPSLVETYPTADWQEREAWDMFGIVFDGHPALTRILM 212

Query: 136 DYGFEGHPLRKDFPVTG 152
              ++GHP RKD+P+ G
Sbjct: 213 PDDWDGHPQRKDYPLGG 229


>gi|118462470|ref|YP_883187.1| NADH dehydrogenase subunit C [Mycobacterium avium 104]
 gi|218534287|sp|A0QJU9|NUOC_MYCA1 RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|118163757|gb|ABK64654.1| NADH-quinone oxidoreductase chain c [Mycobacterium avium 104]
          Length = 235

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 56/162 (34%), Positives = 83/162 (51%), Gaps = 6/162 (3%)

Query: 6   EDLGDYIVN---SFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
           + L + + +    F  ++   V    EL+L VD   L  +   LRDDP   F   + + G
Sbjct: 64  DTLTESLQSNGIEFHQAIEKVVVYRDELTLHVDRAALPHVAQHLRDDPRLRFEMCLGVSG 123

Query: 63  VDFL-SRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKS-VPSIVGIYPGADWFEREVWDMY 120
           V +          VY   S  +NRR+R+++AV +G   +PS+  IYP  DW ERE +D +
Sbjct: 124 VHYPHETGRELHAVYPLQSITHNRRVRLEVAVPDGDPHIPSLYRIYPTTDWHERETYDFF 183

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKV 162
           GI F+GHP L RI     + GHP RKD+P+ G + + Y    
Sbjct: 184 GIIFDGHPSLTRIEMPDDWHGHPQRKDYPLGG-IPVEYKGAQ 224


>gi|291004453|ref|ZP_06562426.1| NADH dehydrogenase subunit C [Saccharopolyspora erythraea NRRL
           2338]
          Length = 252

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 58/137 (42%), Positives = 80/137 (58%), Gaps = 2/137 (1%)

Query: 18  GSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDF-LSRSNRFDVVY 76
            SV       GE++  VD   L+ +C  LRDDP   F     + GVD+      R   VY
Sbjct: 96  ESVLQVTVDRGEITFYVDRDHLLEICRSLRDDPALRFEMCASVSGVDYGPEVPQRLHSVY 155

Query: 77  HFLSPKYNRRLRVKIAVAEGKS-VPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILT 135
           H LS  Y RR+R+++A+      VPS+V +YP AD+ ERE +DM+GI ++GHP L RIL 
Sbjct: 156 HLLSMTYRRRIRLEVALDVDDPHVPSVVEVYPTADYQERETYDMFGIVYDGHPALTRILM 215

Query: 136 DYGFEGHPLRKDFPVTG 152
              ++GHP RKD+P+ G
Sbjct: 216 PDDWDGHPQRKDYPLGG 232


>gi|254382441|ref|ZP_04997800.1| NADH dehydrogenase subunit C [Streptomyces sp. Mg1]
 gi|194341345|gb|EDX22311.1| NADH dehydrogenase subunit C [Streptomyces sp. Mg1]
          Length = 240

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 10/166 (6%)

Query: 6   EDLGDYIVNSF-------SGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNII 58
           +++ D +  +          ++   V   GEL+  +    LV + S LRDDP   F    
Sbjct: 65  DEVADELEGALEEQGLVPGNAIEKTVVDRGELTFHIAREHLVQVASTLRDDPALRFELCT 124

Query: 59  DLCGVDFLSRSNR-FDVVYHFLSPKYNRRLRVKIAVAEGKS-VPSIVGIYPGADWFEREV 116
            + GV F     R    VYH  S  + R +R++++   G   VPS+V +YP  DW ERE 
Sbjct: 125 GVSGVHFPGDKGRELHAVYHLRSITHGRVVRLEVSAPNGDPHVPSLVAVYPTNDWHERET 184

Query: 117 WDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKV 162
           +D +G+ F+GHP L RI+    ++G P RKD+P+ G + + Y    
Sbjct: 185 YDFFGLIFDGHPALTRIMMPDDWQGFPQRKDYPLGG-IPVEYKGAQ 229


>gi|41409301|ref|NP_962137.1| NADH dehydrogenase subunit C [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|81700409|sp|Q73V13|NUOC_MYCPA RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|41398121|gb|AAS05751.1| NuoC [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 235

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 55/162 (33%), Positives = 82/162 (50%), Gaps = 6/162 (3%)

Query: 6   EDLGDYIVN---SFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
           + L + + +    F  ++   V    EL+L VD   L  +   LRDDP   F   + + G
Sbjct: 64  DTLTESLQSNGIEFHQAIEKVVVYRDELTLHVDRAALPHVAQHLRDDPRLRFEMCLGVSG 123

Query: 63  VDFL-SRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKS-VPSIVGIYPGADWFEREVWDMY 120
           V +          VY   S  +NRR+R+++AV +    +PS+  IYP  DW ERE +D +
Sbjct: 124 VHYPHETGRELHAVYPLQSITHNRRVRLEVAVPDEDPHIPSLYRIYPTTDWHERETYDFF 183

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKV 162
           GI F+GHP L RI     + GHP RKD+P+ G + + Y    
Sbjct: 184 GIVFDGHPSLTRIEMPDDWHGHPQRKDYPLGG-IPVEYKGAQ 224


>gi|134103328|ref|YP_001108989.1| NADH dehydrogenase subunit C [Saccharopolyspora erythraea NRRL
           2338]
 gi|218534330|sp|A4FPT9|NUOC_SACEN RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|133915951|emb|CAM06064.1| putative NADH dehydrogenase chain C [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 249

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/137 (42%), Positives = 80/137 (58%), Gaps = 2/137 (1%)

Query: 18  GSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDF-LSRSNRFDVVY 76
            SV       GE++  VD   L+ +C  LRDDP   F     + GVD+      R   VY
Sbjct: 93  ESVLQVTVDRGEITFYVDRDHLLEICRSLRDDPALRFEMCASVSGVDYGPEVPQRLHSVY 152

Query: 77  HFLSPKYNRRLRVKIAVAEGKS-VPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILT 135
           H LS  Y RR+R+++A+      VPS+V +YP AD+ ERE +DM+GI ++GHP L RIL 
Sbjct: 153 HLLSMTYRRRIRLEVALDVDDPHVPSVVEVYPTADYQERETYDMFGIVYDGHPALTRILM 212

Query: 136 DYGFEGHPLRKDFPVTG 152
              ++GHP RKD+P+ G
Sbjct: 213 PDDWDGHPQRKDYPLGG 229


>gi|315605128|ref|ZP_07880179.1| NADH-quinone oxidoreductase subunit C [Actinomyces sp. oral taxon
           180 str. F0310]
 gi|315313164|gb|EFU61230.1| NADH-quinone oxidoreductase subunit C [Actinomyces sp. oral taxon
           180 str. F0310]
          Length = 245

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/150 (32%), Positives = 70/150 (46%), Gaps = 5/150 (3%)

Query: 8   LGDYIVN---SFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD 64
           L + I       S  +       G+L + V    +V + S+LRDDP   F   +   GV 
Sbjct: 76  LEELIAADGLKVSDVIEKVTVDRGQLGIFVAREHIVRVASYLRDDPDLRFEMCLGTNGVH 135

Query: 65  FL-SRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPS-IVGIYPGADWFEREVWDMYGI 122
           +   +      +Y   S  +NR +R+++   +       IV +YP  DW ERE WD+ GI
Sbjct: 136 YPLDKGRELHAIYPLYSITHNRLIRLEVTCPDSDPRIPSIVSVYPANDWQERETWDLIGI 195

Query: 123 FFEGHPDLRRILTDYGFEGHPLRKDFPVTG 152
            F GHP L R      + GHP RKD+P+ G
Sbjct: 196 IFTGHPSLTRTAMPDDWVGHPQRKDYPLGG 225


>gi|21222947|ref|NP_628726.1| NADH dehydrogenase subunit C [Streptomyces coelicolor A3(2)]
 gi|81859292|sp|Q9XAQ6|NUOC_STRCO RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|5042275|emb|CAB44529.1| NuoC, NADH dehydrogenase subunit [Streptomyces coelicolor A3(2)]
          Length = 251

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 6/162 (3%)

Query: 6   EDLGDYIVNS--FSG-SVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
           ++L   +         ++   V   GEL+  ++   LV +   LRDDP   F     + G
Sbjct: 80  DELEGALEEQGLLPDNAIEKTVVDRGELTFHIEREHLVRVARTLRDDPALRFELCTGVSG 139

Query: 63  VDFLSRSNR-FDVVYHFLSPKYNRRLRVKIAVAEGKS-VPSIVGIYPGADWFEREVWDMY 120
           V +     R    VYH  S  +NR +R++++  +G   +PS+V +YP  DW ERE +D +
Sbjct: 140 VHYPHDKGRELHAVYHLRSITHNRLIRLEVSAPDGDPHIPSLVSVYPTNDWHERETYDFF 199

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKV 162
           GI F+ HP L RI+    ++G P RKD+P+ G + + Y    
Sbjct: 200 GIVFDDHPALTRIMMPDDWQGFPQRKDYPLGG-IPVEYKGAQ 240


>gi|254776457|ref|ZP_05217973.1| NADH dehydrogenase subunit C [Mycobacterium avium subsp. avium ATCC
           25291]
          Length = 235

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 55/162 (33%), Positives = 82/162 (50%), Gaps = 6/162 (3%)

Query: 6   EDLGDYIVN---SFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
           + L + + +    F  ++   V    EL+L VD   L  +   LRDDP   F   + + G
Sbjct: 64  DTLTESLQSNGIEFHQAIEKVVVYRDELTLHVDRAALPHVAQHLRDDPRLRFEMCLGVSG 123

Query: 63  VDFL-SRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKS-VPSIVGIYPGADWFEREVWDMY 120
           V +          VY   S  +NRR+R+++AV +    +PS+  IYP  DW ERE +D +
Sbjct: 124 VHYPHETGRELHAVYPLQSITHNRRVRLEVAVPDEDPHIPSLYRIYPTTDWHERETYDFF 183

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKV 162
           GI F+GHP L RI     + GHP RKD+P+ G + + Y    
Sbjct: 184 GIIFDGHPSLTRIEMPDDWHGHPQRKDYPLGG-IPVEYKGAQ 224


>gi|227497896|ref|ZP_03928076.1| NADH dehydrogenase chain C [Actinomyces urogenitalis DSM 15434]
 gi|226832688|gb|EEH65071.1| NADH dehydrogenase chain C [Actinomyces urogenitalis DSM 15434]
          Length = 253

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/138 (34%), Positives = 71/138 (51%), Gaps = 3/138 (2%)

Query: 18  GSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFL-SRSNRFDVVY 76
            ++   V   G+L+L +    L+ +   LRDD    F   + + GV +           +
Sbjct: 96  EAIEKVVIEHGQLTLFITREHLLDVVRPLRDDQDLRFELCLGVTGVHYPADSGRELHACF 155

Query: 77  HFLSPKYNRR-LRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRIL 134
             +S  +  R LR+++   E    VPSIV +YPG DW ERE WD+ GI F+GHP+L R  
Sbjct: 156 ELVSLTHGGRQLRLEVTCPESDPHVPSIVEVYPGDDWHERETWDLMGIVFDGHPNLTRSA 215

Query: 135 TDYGFEGHPLRKDFPVTG 152
               + GHP RKD+P+ G
Sbjct: 216 MPDDWVGHPQRKDYPLGG 233


>gi|256785939|ref|ZP_05524370.1| NADH dehydrogenase subunit C [Streptomyces lividans TK24]
          Length = 251

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 6/162 (3%)

Query: 6   EDLGDYIVNS--FSG-SVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
           ++L   +         ++   V   GEL+  ++   LV +   LRDDP   F     + G
Sbjct: 80  DELEGALEEQGLLPDNAIEKTVVDRGELTFHIEREHLVRVARTLRDDPALRFELCTGVSG 139

Query: 63  VDFLSRSNR-FDVVYHFLSPKYNRRLRVKIAVAEGKS-VPSIVGIYPGADWFEREVWDMY 120
           V +     R    VYH  S  +NR +R++++  +G   +PS+V +YP  DW ERE +D +
Sbjct: 140 VHYPHDKGRELHAVYHLRSITHNRLIRLEVSAPDGDPHIPSLVSVYPTNDWHERETYDFF 199

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKV 162
           GI F+ HP L RI+    ++G P RKD+P+ G + + Y    
Sbjct: 200 GIVFDDHPALTRIMMPDDWQGFPQRKDYPLGG-IPVEYKGAQ 240


>gi|326382761|ref|ZP_08204451.1| NADH dehydrogenase subunit C [Gordonia neofelifaecis NRRL B-59395]
 gi|326198351|gb|EGD55535.1| NADH dehydrogenase subunit C [Gordonia neofelifaecis NRRL B-59395]
          Length = 230

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 50/174 (28%), Positives = 88/174 (50%), Gaps = 16/174 (9%)

Query: 6   EDLGDYIVNSFS-------GSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNII 58
           +++ D +    +        +V   V   G++++ V    L+ + + LRD+P   F   +
Sbjct: 55  DEIADELEAGLARRGVAYDDAVEKVVVDRGDMTVFVTREHLLPVAATLRDEPTLRFELCL 114

Query: 59  DLCGVDFLSR-SNRFDVVYHFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREV 116
            + GV +          VY   S  +NRR+R+++A+ +    V +++ +YP  DW ERE 
Sbjct: 115 GVSGVHYPEESGRELHAVYPLRSITHNRRIRLEVAIPDADPHVTTLLPVYPTDDWHERET 174

Query: 117 WDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYD------DKVKK 164
           +D +GI F+GHP L RI     +EGHP RKD+P+ G V + Y        + ++
Sbjct: 175 YDFFGIVFDGHPSLTRIEMPDDWEGHPQRKDYPLGG-VPVEYKGATIAPPEQRR 227


>gi|302553428|ref|ZP_07305770.1| NADH dehydrogenase subunit C [Streptomyces viridochromogenes DSM
           40736]
 gi|302471046|gb|EFL34139.1| NADH dehydrogenase subunit C [Streptomyces viridochromogenes DSM
           40736]
          Length = 336

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 6/162 (3%)

Query: 6   EDLGDYIVNS--FS-GSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
           ++L   +         ++   V    EL+  ++   L+ +   LRDDP   F     + G
Sbjct: 165 DELEGALEEQGLLPANAIEKTVVDRDELTFHIEREHLLLVARTLRDDPALRFELCTGVSG 224

Query: 63  VDFL-SRSNRFDVVYHFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMY 120
           V +   +      VYH  S  +NR +R++++  +    +PS+  +YP  DW ERE +D +
Sbjct: 225 VHYPSDKGRELHAVYHLRSITHNRLIRLEVSAPDSDPHIPSLFSVYPTNDWHERETYDFF 284

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKV 162
           GI F+GHP L RI+    ++G P RKD+P+ G + + Y    
Sbjct: 285 GIVFDGHPALTRIMMPDDWQGFPQRKDYPLGG-IPVEYKGAQ 325


>gi|193215670|ref|YP_001996869.1| NADH (or F420H2) dehydrogenase subunit C [Chloroherpeton thalassium
           ATCC 35110]
 gi|193089147|gb|ACF14422.1| NADH (or F420H2) dehydrogenase, subunit C [Chloroherpeton
           thalassium ATCC 35110]
          Length = 177

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 49/149 (32%), Positives = 87/149 (58%), Gaps = 3/149 (2%)

Query: 5   IEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD 64
           +  +   + ++F  ++        EL+  V   ++  +  FL+      F   +D+CG D
Sbjct: 2   LNKVSIALQSAFPKALLETTKFRNELTFRVKKENIREISQFLK--EELGFNLCVDICGAD 59

Query: 65  FLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKS-VPSIVGIYPGADWFEREVWDMYGIF 123
             +   RF+V+Y+ ++ ++N R+R+K+ + E K  +PS++ ++P ADW+ERE +DM+GI 
Sbjct: 60  RFNEEPRFEVIYNLMNLEHNTRIRLKVWLEEAKPHLPSVISVWPAADWYERETYDMFGIV 119

Query: 124 FEGHPDLRRILTDYGFEGHPLRKDFPVTG 152
           F  HPD+RRI     FE  P+RK+FP+ G
Sbjct: 120 FVNHPDMRRIYMPEDFEYFPMRKEFPLVG 148


>gi|289641425|ref|ZP_06473589.1| NADH (or F420H2) dehydrogenase, subunit C [Frankia symbiont of
           Datisca glomerata]
 gi|289508761|gb|EFD29696.1| NADH (or F420H2) dehydrogenase, subunit C [Frankia symbiont of
           Datisca glomerata]
          Length = 229

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 47/141 (33%), Positives = 75/141 (53%), Gaps = 3/141 (2%)

Query: 15  SFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSR--SNRF 72
             + ++   V   GEL+L V    L+++   LRDD    F  +  + G D+       R 
Sbjct: 69  QLTDALERVVVDRGELTLHVRRDHLLAVAQTLRDDLQLRFELLSGVSGADYPDDPTGRRL 128

Query: 73  DVVYHFLSPKYNRRLRVKIAVAEGKSVPS-IVGIYPGADWFEREVWDMYGIFFEGHPDLR 131
             VYH  S  + RR+R++++VA+       ++ ++P ADW ERE +D++GI F G   L 
Sbjct: 129 HAVYHLTSMTWRRRVRLEVSVADDDPTVPSVMAVWPTADWHERETYDLFGIVFSGRDGLE 188

Query: 132 RILTDYGFEGHPLRKDFPVTG 152
           RI+    + GHP RKD+P+ G
Sbjct: 189 RIMMPDDWIGHPQRKDYPLGG 209


>gi|239980150|ref|ZP_04702674.1| NADH dehydrogenase subunit C [Streptomyces albus J1074]
 gi|291452005|ref|ZP_06591395.1| NADH dehydrogenase subunit C [Streptomyces albus J1074]
 gi|291354954|gb|EFE81856.1| NADH dehydrogenase subunit C [Streptomyces albus J1074]
          Length = 251

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 47/166 (28%), Positives = 84/166 (50%), Gaps = 10/166 (6%)

Query: 6   EDLGDYIVNSF-------SGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNII 58
           +++ D +  +        + ++   V   GEL+  ++   L+ +   LRDDP   F    
Sbjct: 76  DEIADELEGALDEQGLLPANAIDRTVVDRGELTFHIEREHLLRVARTLRDDPALRFELCT 135

Query: 59  DLCGVDFLSRSNR-FDVVYHFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREV 116
            +  V +     R    VYH  S  + R +R++++  +    +PS+V +YP  DW ERE 
Sbjct: 136 GVSAVHYPEDKGRELHAVYHLRSITHKRLIRLEVSAPDADPHIPSLVSVYPTNDWHEREA 195

Query: 117 WDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKV 162
           +D +G+ F+GHP L R++    ++GHP RKD+P+ G + + Y    
Sbjct: 196 YDFFGLIFDGHPALTRLMMPDDWQGHPQRKDYPLGG-IAVEYKGAQ 240


>gi|162448794|ref|YP_001611161.1| NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56']
 gi|161159376|emb|CAN90681.1| NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56']
          Length = 217

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 63/155 (40%), Positives = 89/155 (57%), Gaps = 9/155 (5%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M +K+ +L   +   F G+V    +  G+ +  +D         FLR+DP       +DL
Sbjct: 1   MSKKVLEL---LTAQFPGAVLETHSQFGDDTAVLDPAVWRDAALFLRNDPRTLMNMFVDL 57

Query: 61  CGVDFLSRS--NRFDVVYHFLSPKYNRRLRVKIAVAEGK----SVPSIVGIYPGADWFER 114
             VD+L R    RF+VV H  S + N R+R+K  V + +     + SIV ++ GA+WFER
Sbjct: 58  TAVDYLWRGDVPRFEVVCHLRSLERNHRIRIKARVGDEEGNGAEIDSIVPVWKGANWFER 117

Query: 115 EVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFP 149
           E +D+ GI F+GHPDLRRIL    FEGHPLRKD+P
Sbjct: 118 ECYDLLGIVFKGHPDLRRILMYPEFEGHPLRKDYP 152


>gi|325673383|ref|ZP_08153074.1| NADH-quinone oxidoreductase subunit C [Rhodococcus equi ATCC 33707]
 gi|325555404|gb|EGD25075.1| NADH-quinone oxidoreductase subunit C [Rhodococcus equi ATCC 33707]
          Length = 250

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 56/158 (35%), Positives = 83/158 (52%), Gaps = 3/158 (1%)

Query: 3   RKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
             + D  D +   F  ++   V   GEL+L V    L +    LRDDP   F   + + G
Sbjct: 79  DALADALDTVGVHFDDAIEKVVVFRGELTLHVRREYLPTAARRLRDDPALRFELCLGVSG 138

Query: 63  VDFL-SRSNRFDVVYHFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMY 120
           V +          VY  +S  + RR+R+++AV +    +PS+ G+YP +DW ERE +D +
Sbjct: 139 VHYPQDPGRELHGVYPLMSVTHGRRVRLEVAVPDADPHIPSLYGVYPTSDWHERETYDFF 198

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHY 158
           GI F+GHP L RI     + GHP RKD+P+ G V + Y
Sbjct: 199 GIVFDGHPALTRIEMPDDWTGHPQRKDYPLGG-VPVEY 235


>gi|147832583|emb|CAN72618.1| hypothetical protein VITISV_029599 [Vitis vinifera]
          Length = 149

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 62/134 (46%), Positives = 86/134 (64%)

Query: 40  VSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV 99
             L  FL+   +      I++CGVD  SR  RF+VVY+ LS +YN R+RV+ +  E   +
Sbjct: 16  FQLLCFLKLHTYTKVQVSINICGVDHPSRKRRFEVVYNLLSTRYNSRIRVQTSADEVTRI 75

Query: 100 PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYD 159
             ++  +P    +EREVW M+G+    HPDL RI TDYGFEGHPLRKD P++G+VE+ YD
Sbjct: 76  SPVLSPFPSVVRWEREVWHMFGVSSINHPDLHRISTDYGFEGHPLRKDLPLSGYVEVRYD 135

Query: 160 DKVKKVVYRPVELM 173
           D  K+VV  P+E+ 
Sbjct: 136 DPEKRVVSEPIEMT 149


>gi|302035989|ref|YP_003796311.1| NADH-quinone oxidoreductase subunits C and D [Candidatus Nitrospira
           defluvii]
 gi|300604053|emb|CBK40385.1| NADH-quinone oxidoreductase, subunits C and D [Candidatus
           Nitrospira defluvii]
          Length = 583

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 62/152 (40%), Positives = 90/152 (59%), Gaps = 4/152 (2%)

Query: 5   IEDLGDYIVNSFSGSVRFAVNS--VGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
           ++ L + ++ +F  +VR         E++  V    +V +  +L D P   F +I D+C 
Sbjct: 1   MQPLLERLMTTFPDAVRGVEVDTARNEITARVAAARIVDVARWLHDTPEASFDHITDICS 60

Query: 63  VDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKS-VPSIVGIYPGADWFEREVWDMYG 121
           VD+ +   RF+VVY  LS  + RR+R+K  V E    + S+ GI+ GA++ EREV+D+ G
Sbjct: 61  VDYPNDPERFEVVYQLLSLAHRRRIRLKARVTEEAPQIASVTGIWKGAEFMEREVYDLMG 120

Query: 122 IFFEGHPDLRRILTDYGF-EGHPLRKDFPVTG 152
           I F GHPDLRRIL    + EGHPLRKDFP  G
Sbjct: 121 ITFVGHPDLRRILLPDDYEEGHPLRKDFPAEG 152


>gi|56791590|gb|AAW30333.1| NADH dehydrogenase subunit 9 [Laurus nobilis]
          Length = 163

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 65/131 (49%), Positives = 86/131 (65%)

Query: 40  VSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV 99
             L  FL+   +      ID+CGVD  SR  RF+VV++ LS +YN R+RV+ +  E   +
Sbjct: 33  FQLLCFLKFHTYTRVQVSIDICGVDHPSRKRRFEVVHNLLSTRYNSRIRVQTSADEVTRI 92

Query: 100 PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYD 159
             +V  +P A W+EREVWDM G+    HPDLRRI TD+GFEGHPLRKD P++G+VE+ YD
Sbjct: 93  SPVVSPFPSAGWWEREVWDMSGVSSINHPDLRRISTDHGFEGHPLRKDLPLSGYVEVRYD 152

Query: 160 DKVKKVVYRPV 170
           D  K+V   PV
Sbjct: 153 DPEKRVFLNPV 163


>gi|326799002|ref|YP_004316821.1| NAD(P)H-quinone oxidoreductase subunit J [Sphingobacterium sp. 21]
 gi|326549766|gb|ADZ78151.1| NAD(P)H-quinone oxidoreductase subunit J [Sphingobacterium sp. 21]
          Length = 167

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 83/158 (52%), Gaps = 2/158 (1%)

Query: 1   MVR-KIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIID 59
           M +   E L  Y+  +F   V       G LS+      ++ + +FL+ +    F+ + D
Sbjct: 1   MTKLNNETLIGYLKQAFESDVNGVEEPFGLLSITTSKEKILEVLAFLKTNKDLQFIYLTD 60

Query: 60  LCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKS-VPSIVGIYPGADWFEREVWD 118
           +  V +  ++    VVYH  S  +N R+R+K+ +   K  +PS   ++ GA+W ERE +D
Sbjct: 61  ITAVHYPEQALSIAVVYHVHSLVHNVRIRIKVFLDGTKPEIPSATSLWNGANWMERETYD 120

Query: 119 MYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVEL 156
            +G+ F+GHPDLRRIL     E  P+RK++P+     +
Sbjct: 121 FFGVIFQGHPDLRRILNVDEMEVFPMRKEYPLEDPNRV 158


>gi|255708962|gb|ACU30386.1| NADH dehydrogenase subunit 9 [Silene conica]
          Length = 131

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 64/126 (50%), Positives = 90/126 (71%)

Query: 32  LDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKI 91
            D +      L  FL+   +  +  ++D+CGVD+ SR  RF+VVY+ LS ++N R+R++ 
Sbjct: 6   FDTNTDFTFQLLCFLKLHSYTRYEVLVDICGVDYPSRKLRFEVVYNLLSTRFNSRIRIQS 65

Query: 92  AVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVT 151
           +  E   +PS+V ++P A+W EREVWDM+GI F  HPDLRRILTDYGFEGHPLRKDFP++
Sbjct: 66  SADEVSRIPSVVSLFPSANWCEREVWDMFGISFINHPDLRRILTDYGFEGHPLRKDFPLS 125

Query: 152 GFVELH 157
           G+VE+ 
Sbjct: 126 GYVEVR 131


>gi|153004159|ref|YP_001378484.1| NADH (or F420H2) dehydrogenase subunit C [Anaeromyxobacter sp.
           Fw109-5]
 gi|152027732|gb|ABS25500.1| NADH (or F420H2) dehydrogenase, subunit C [Anaeromyxobacter sp.
           Fw109-5]
          Length = 174

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 69/171 (40%), Positives = 98/171 (57%), Gaps = 5/171 (2%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVG-ELSLDVDCGDLVSLCSFLRDDPHCCFVNIID 59
           M + + D    +V  F  +V      VG +    V    +V +C FL+ DP   F     
Sbjct: 1   MSKAVID---ALVERFPDAVYDPYVGVGGDDCAFVKKDRIVDVCRFLKSDPGMLFDMAPY 57

Query: 60  LCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVA-EGKSVPSIVGIYPGADWFEREVWD 118
           +  VD+L +  RF+VVY+ LS K NRR R+++ V  +   VPS+ G++ GADWFER  +D
Sbjct: 58  ITAVDYLGQEPRFEVVYNLLSLKTNRRARLRVKVPEQDAVVPSVTGLWRGADWFERYCFD 117

Query: 119 MYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRP 169
           MYGI F GHPD+RR+L    F GHPLRKD+P+ G   L  + +V+ +V  P
Sbjct: 118 MYGIRFTGHPDMRRLLMYDEFVGHPLRKDYPLKGRQPLVQEREVRDIVRGP 168


>gi|302536170|ref|ZP_07288512.1| NADH dehydrogenase subunit C [Streptomyces sp. C]
 gi|302445065|gb|EFL16881.1| NADH dehydrogenase subunit C [Streptomyces sp. C]
          Length = 240

 Score =  135 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 6/165 (3%)

Query: 3   RKIEDLGDYIVNS--FS-GSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIID 59
             +++L   +         ++   V   GEL+L +    LV + + LRDDP   F     
Sbjct: 66  EVVDELEGALEEQDLLPRNAIEKTVVDRGELTLHIAREHLVRVAATLRDDPALRFELCTG 125

Query: 60  LCGVDFLSRSNR-FDVVYHFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVW 117
           + GV F     R    VYH  S  + R LR++++V +    +PS+V +YP  DW ERE +
Sbjct: 126 VSGVHFPGDKGRELHAVYHLRSLTHGRILRLEVSVPDADPHLPSLVTVYPTNDWHEREAY 185

Query: 118 DMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKV 162
           D +G+ F+GHP L RI+    ++G P RKD+P+ G + + Y    
Sbjct: 186 DFFGLVFDGHPALTRIMMPDDWQGFPQRKDYPLGG-IPVEYKGAQ 229


>gi|189426185|ref|YP_001953362.1| NADH (or F420H2) dehydrogenase, subunit C [Geobacter lovleyi SZ]
 gi|218534275|sp|B3E9W7|NUOC_GEOLS RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|189422444|gb|ACD96842.1| NADH (or F420H2) dehydrogenase, subunit C [Geobacter lovleyi SZ]
          Length = 162

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 54/146 (36%), Positives = 83/146 (56%), Gaps = 4/146 (2%)

Query: 10  DYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRS 69
           + +   F  S+       G+  + V   D+V++ +FL+    C F  + D+  VD+L ++
Sbjct: 9   EKLQGKFEASILEVKQDRGDWIVTVKKEDIVAVLAFLK--QECKFDMLTDVTAVDYLGKA 66

Query: 70  -NRFDVVYHFLSPKYNRRLRVKIAV-AEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGH 127
            +RF +VY   S  +  RLR+K  V      + S   +Y  A+W EREV+D++GI F+ H
Sbjct: 67  ADRFMMVYQLTSVPFKDRLRIKAPVAEADCVIGSATQVYGSANWLEREVFDLFGIRFDKH 126

Query: 128 PDLRRILTDYGFEGHPLRKDFPVTGF 153
           PDLRRIL    +EGHPLRKD+P+ G 
Sbjct: 127 PDLRRILMTPDWEGHPLRKDYPLQGP 152


>gi|226365382|ref|YP_002783165.1| NADH dehydrogenase subunit C [Rhodococcus opacus B4]
 gi|226243872|dbj|BAH54220.1| NADH-quinone oxidoreductase chain C [Rhodococcus opacus B4]
          Length = 239

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 55/150 (36%), Positives = 78/150 (52%), Gaps = 5/150 (3%)

Query: 8   LGDYIVNS---FSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD 64
           LG  +  S   F  +V   V   GE++  V    L  +   LRD+P   F   + + GV 
Sbjct: 70  LGAALAESGVGFEDAVESVVVFRGEVTFGVRREFLPVVARALRDEPDLRFEMCLGVNGVH 129

Query: 65  FL-SRSNRFDVVYHFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMYGI 122
           F          VY  LS  +NRR+R+++AV +    +PS+  +YP  DW ERE +D +GI
Sbjct: 130 FPQEAGRELHAVYPLLSITHNRRIRLEVAVPDVDPHIPSLYDVYPTNDWHERETYDFFGI 189

Query: 123 FFEGHPDLRRILTDYGFEGHPLRKDFPVTG 152
            F+GHP L RI     + GHP RKD+P+ G
Sbjct: 190 VFDGHPSLTRIEMPDDWPGHPQRKDYPLGG 219


>gi|215428603|ref|ZP_03426522.1| NADH dehydrogenase subunit C [Mycobacterium tuberculosis T92]
          Length = 420

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 10/166 (6%)

Query: 6   EDLGDYIVN-------SFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNII 58
           +D+ D +          F  +V   V    EL+L V    L  +   LRD+P   F   +
Sbjct: 245 DDIVDRLAEALRHERVEFEDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCL 304

Query: 59  DLCGVDFL-SRSNRFDVVYHFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREV 116
            + GV +          VY   S  +NRRLR++++  +    +PS+  IYP  DW ERE 
Sbjct: 305 GVSGVHYPHETGRELHAVYPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERET 364

Query: 117 WDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKV 162
           +D +GI F+GHP L RI     ++GHP RKD+P+ G + + Y    
Sbjct: 365 YDFFGIIFDGHPALTRIEMPDDWQGHPQRKDYPLGG-IPVEYKGAQ 409


>gi|255709002|gb|ACU30406.1| NADH dehydrogenase subunit 9 [Silene macrodonta]
          Length = 131

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 66/126 (52%), Positives = 90/126 (71%)

Query: 32  LDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKI 91
            D +      L  FL+   +  +  ++D+CGVD+ SR  RF+VVY+ LS ++N RLRV+ 
Sbjct: 6   FDTNTDFAFQLLCFLKLHSYTRYEVLVDICGVDYPSRRLRFEVVYNLLSTRFNSRLRVQT 65

Query: 92  AVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVT 151
           +  E   +PS+V ++P A+W EREVWDM+GI F  HPDLRRILTDYGFEGHPLRKDFP++
Sbjct: 66  SADEVSRIPSVVSLFPSANWCEREVWDMFGISFINHPDLRRILTDYGFEGHPLRKDFPLS 125

Query: 152 GFVELH 157
           G+VE+ 
Sbjct: 126 GYVEVR 131


>gi|325105665|ref|YP_004275319.1| NADH dehydrogenase subunit C [Pedobacter saltans DSM 12145]
 gi|324974513|gb|ADY53497.1| NADH dehydrogenase subunit C [Pedobacter saltans DSM 12145]
          Length = 167

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 46/152 (30%), Positives = 76/152 (50%), Gaps = 1/152 (0%)

Query: 6   EDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDF 65
           + +   + + F+  +       G L+ + +   ++ L SFL++D    F  + DL  V +
Sbjct: 7   QQVIARLESRFASEISNIEEPYGLLTFETERSTILELLSFLKNDEELSFNYLTDLTAVHY 66

Query: 66  LSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPS-IVGIYPGADWFEREVWDMYGIFF 124
             R+    VVYH  S K N R+R+K  +         +  ++ GA+W ERE +D +GI F
Sbjct: 67  PERNLALGVVYHLHSFKNNVRVRIKTFLPVSDPTIPTVTDLWNGANWMERETFDFFGIQF 126

Query: 125 EGHPDLRRILTDYGFEGHPLRKDFPVTGFVEL 156
            GHPDLRRIL        P+RK++P+     +
Sbjct: 127 IGHPDLRRILNVDDMTVFPMRKEYPLEDPNRV 158


>gi|117927478|ref|YP_872029.1| NADH dehydrogenase subunit C [Acidothermus cellulolyticus 11B]
 gi|218534277|sp|A0LRI3|NUOC_ACIC1 RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|117647941|gb|ABK52043.1| NADH dehydrogenase subunit C [Acidothermus cellulolyticus 11B]
          Length = 192

 Score =  134 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 51/140 (36%), Positives = 72/140 (51%), Gaps = 2/140 (1%)

Query: 15  SFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFL-SRSNRFD 73
               ++       GEL+  V    L  L   LRDD    F  +  L GV +         
Sbjct: 33  RLPDAIERTDVDRGELTFHVRREYLRELALVLRDDERLRFELLNSLSGVHYPTDVGRELH 92

Query: 74  VVYHFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRR 132
           VVY   S  Y R +R+++A  +    +PS+V ++P AD+ ERE WDM+G+ F+GHP L R
Sbjct: 93  VVYELTSMTYRRHIRLEVAAPDADPHIPSVVDVWPTADFQERETWDMFGVIFDGHPALTR 152

Query: 133 ILTDYGFEGHPLRKDFPVTG 152
           IL    + GHP RKD+P+ G
Sbjct: 153 ILMPDDWPGHPQRKDYPLGG 172


>gi|56791596|gb|AAW30336.1| NADH dehydrogenase subunit 9 [Philodendron hederaceum var.
           oxycardium]
          Length = 160

 Score =  134 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 64/125 (51%), Positives = 84/125 (67%)

Query: 40  VSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV 99
             L  FL+   +      ID+CGVD  SR  RF+VV++ LS +YN R+RV+ +  E   +
Sbjct: 36  FQLLCFLKFHTYTRVQVSIDICGVDHPSRKRRFEVVHNLLSTRYNSRIRVQTSADEVTRI 95

Query: 100 PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYD 159
             +V  +P A W+EREVWDM G+    HPDLRRI TDYGFEGHPLRKDFP++G+VE+ YD
Sbjct: 96  SPVVSPFPSAGWWEREVWDMSGVSSINHPDLRRISTDYGFEGHPLRKDFPLSGYVEVRYD 155

Query: 160 DKVKK 164
           D  K+
Sbjct: 156 DPEKR 160


>gi|229821707|ref|YP_002883233.1| NADH (or F420H2) dehydrogenase, subunit C [Beutenbergia cavernae
           DSM 12333]
 gi|229567620|gb|ACQ81471.1| NADH (or F420H2) dehydrogenase, subunit C [Beutenbergia cavernae
           DSM 12333]
          Length = 240

 Score =  134 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 58/140 (41%), Positives = 76/140 (54%), Gaps = 2/140 (1%)

Query: 15  SFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFL-SRSNRFD 73
           +F  +V   V    EL+LDV    LV +   LRDDP   F   + + GV +         
Sbjct: 81  AFDDAVEKVVVDRDELTLDVRREHLVLVALSLRDDPDLRFDLSLGVSGVHYPADTGRELH 140

Query: 74  VVYHFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRR 132
            VYH  S  +NRRLR+++AV +    VPS   +YP  DW ERE WD +GI F+GHP L R
Sbjct: 141 AVYHLHSITHNRRLRLEVAVPDADPHVPSTTAVYPANDWHERETWDFFGIVFDGHPALAR 200

Query: 133 ILTDYGFEGHPLRKDFPVTG 152
           I     + GHP RKD+P+ G
Sbjct: 201 IEMPDDWVGHPQRKDYPLGG 220


>gi|291334204|gb|ADD93871.1| NADH/F420H2 dehydrogenase subunit C [uncultured marine bacterium
           MedDCM-OCT-S08-C1340]
          Length = 192

 Score =  134 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 62/197 (31%), Positives = 88/197 (44%), Gaps = 42/197 (21%)

Query: 5   IEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD 64
           +  + + +       V         ++L VD  +L  +   LR+     F  + DLC VD
Sbjct: 1   MNKIRELLQELIIDYVES-----DMITLTVDKLNLRKVLKTLRETKDLQFNQLTDLCAVD 55

Query: 65  FLSRSNRFD------------------------------------VVYHFLSPKYNRRLR 88
            +                                           VVYH LS KYN R+R
Sbjct: 56  LIEYGESEWETKETTSKGYNRGINPQSHSRIDFVNEDVDEEYKLCVVYHLLSIKYNMRIR 115

Query: 89  VKIAVAEGKSVPS-IVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKD 147
           VK  ++    +   +  I+  ADW+ERE +D++G+ FEGH DLRRILTDYGF GHP RK 
Sbjct: 116 VKCNLSNESLIVPSVTDIFASADWYEREAYDLFGVLFEGHQDLRRILTDYGFIGHPFRKK 175

Query: 148 FPVTGFVELHYDDKVKK 164
           FP+ G  ++ YD + KK
Sbjct: 176 FPLIGNTQVTYDPEQKK 192


>gi|239943478|ref|ZP_04695415.1| NADH dehydrogenase subunit C [Streptomyces roseosporus NRRL 15998]
 gi|239989932|ref|ZP_04710596.1| NADH dehydrogenase subunit C [Streptomyces roseosporus NRRL 11379]
 gi|291446949|ref|ZP_06586339.1| NuoC [Streptomyces roseosporus NRRL 15998]
 gi|291349896|gb|EFE76800.1| NuoC [Streptomyces roseosporus NRRL 15998]
          Length = 241

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 79/162 (48%), Gaps = 6/162 (3%)

Query: 6   EDLGDYIVNS--FSG-SVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
           ++L   +         ++   V    EL+  +    L+ +   LRDDP   F     + G
Sbjct: 70  DELEGALEEQDLLPENAIERTVVDRDELTFHIAREHLLQVARTLRDDPALRFELCTGVSG 129

Query: 63  VDFLSRSNR-FDVVYHFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMY 120
           V F     R    VYH  S  + R +R++++  +    +PS+V +YP  DW ERE +D +
Sbjct: 130 VHFPGDKGRELHAVYHLRSLTHGRLIRLEVSAPDSDPHIPSLVEVYPTNDWHEREAYDFF 189

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKV 162
           G+ F+GHP L RI+    ++G P RKD+P+ G + + Y    
Sbjct: 190 GLIFDGHPALTRIMMPDDWQGFPQRKDYPLGG-IAVEYKGAQ 230


>gi|183981496|ref|YP_001849787.1| NADH dehydrogenase I (chain C) NuoC (NADH- ubiquinone
           oxidoreductase chain C) [Mycobacterium marinum M]
 gi|218534290|sp|B2HGE6|NUOC_MYCMM RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|183174822|gb|ACC39932.1| NADH dehydrogenase I (chain C) NuoC (NADH- ubiquinone
           oxidoreductase chain C) [Mycobacterium marinum M]
          Length = 238

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 10/166 (6%)

Query: 6   EDLGDYIVN-------SFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNII 58
           +++ D +          F  ++   V    EL+L V    L+ +   LRD+P   F   +
Sbjct: 63  DEIADRLAEALNRDGVEFEDAIEKVVVYRNELTLHVRREALLRVAQSLRDEPELRFELCL 122

Query: 59  DLCGVDFL-SRSNRFDVVYHFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREV 116
            + GV +          VY   S  +NRRLR++++  +    +PS+  +YP  DW ERE 
Sbjct: 123 GVNGVHYPHETGRELHAVYPLQSITHNRRLRLEVSAPDSDPHIPSLYAVYPTNDWHERET 182

Query: 117 WDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKV 162
           +D +GI F+GHP L RI     ++GHP RKD+P+ G + + Y    
Sbjct: 183 YDFFGIIFDGHPSLTRIEMPDDWQGHPQRKDYPLGG-IPVEYKGAQ 227


>gi|118617948|ref|YP_906280.1| NADH dehydrogenase subunit C [Mycobacterium ulcerans Agy99]
 gi|218534310|sp|A0PR40|NUOC_MYCUA RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|118570058|gb|ABL04809.1| NADH dehydrogenase I (chain C) NuoC (NADH- ubiquinone
           oxidoreductase chain C) [Mycobacterium ulcerans Agy99]
          Length = 238

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 10/166 (6%)

Query: 6   EDLGDYIVN-------SFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNII 58
           +++ D +          F  ++   V    EL+L V    L+ +   LRD+P   F   +
Sbjct: 63  DEIADRLAEALNRDGVEFEDAIEKVVVYRNELTLHVRREALLRVAQSLRDEPELRFELCL 122

Query: 59  DLCGVDFL-SRSNRFDVVYHFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREV 116
            + GV +          VY   S  +NRRLR++++  +    +PS+  +YP  DW ERE 
Sbjct: 123 GVNGVHYPHETGRELHAVYPLQSITHNRRLRLEVSAPDSDPHIPSLYAVYPTNDWHERET 182

Query: 117 WDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKV 162
           +D +GI F+GHP L RI     ++GHP RKD+P+ G + + Y    
Sbjct: 183 YDFFGIIFDGHPSLTRIEMPDDWQGHPQRKDYPLGG-IPVEYKGAQ 227


>gi|154508639|ref|ZP_02044281.1| hypothetical protein ACTODO_01140 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798273|gb|EDN80693.1| hypothetical protein ACTODO_01140 [Actinomyces odontolyticus ATCC
           17982]
          Length = 245

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 5/150 (3%)

Query: 8   LGDYIVN---SFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD 64
           L + IV      +  +       G+L + +    +  +  +LRDD    F   +   G  
Sbjct: 76  LEELIVADGLEVADVIEKVTVDRGQLGIFIAREYIARVAKYLRDDADLRFEMCLGTNGAH 135

Query: 65  FL-SRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPS-IVGIYPGADWFEREVWDMYGI 122
           +   +      +Y   S  +NR +R+++   +       IV +YPG DW ERE WD+ GI
Sbjct: 136 YPLDKGRELHAIYPLYSITHNRMIRLEVTCPDEDPRIPSIVSVYPGNDWQERETWDLIGI 195

Query: 123 FFEGHPDLRRILTDYGFEGHPLRKDFPVTG 152
            F GHP L R      + GHP RKD+P+ G
Sbjct: 196 VFTGHPSLTRTAMPDDWVGHPQRKDYPLGG 225


>gi|255708944|gb|ACU30377.1| NADH dehydrogenase subunit 9 [Silene ammophila]
          Length = 131

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 67/126 (53%), Positives = 92/126 (73%)

Query: 32  LDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKI 91
            D +      L  FL+   +  +  ++D+CGVD+ SRS RF+VVY+ LS ++N RLRV+ 
Sbjct: 6   FDTNTDFTFQLLCFLKLHSYTRYEVLVDICGVDYPSRSLRFEVVYNLLSTRFNSRLRVQS 65

Query: 92  AVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVT 151
           +  E + +PS+V ++P A+W EREVWDM+GI F  HPDLRRILTDYGFEGHPLRKDFP++
Sbjct: 66  SADEVRRIPSVVSLFPSANWCEREVWDMFGISFINHPDLRRILTDYGFEGHPLRKDFPLS 125

Query: 152 GFVELH 157
           G+VE+ 
Sbjct: 126 GYVEVR 131


>gi|29831382|ref|NP_826016.1| NADH dehydrogenase subunit C [Streptomyces avermitilis MA-4680]
 gi|29608497|dbj|BAC72551.1| putative NADH dehydrogenase I chain C (complex I) [Streptomyces
           avermitilis MA-4680]
          Length = 248

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 83/166 (50%), Gaps = 10/166 (6%)

Query: 6   EDLGDYIVNSF-------SGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNII 58
           +++ D +  +          ++   V    EL+  ++   L+ +   LRDDP   F    
Sbjct: 73  DEVADELEGALEEQGLVPGNAIEKTVVDRDELTFHIEREYLLRVAQTLRDDPALRFELCT 132

Query: 59  DLCGVDFLSRSNR-FDVVYHFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREV 116
            +  V +L    R    VYH  S  +NR +R++++  +    +PS+V +YP  DW ERE 
Sbjct: 133 GVSAVHYLEDKGRELHAVYHLRSITHNRLIRLEVSAPDADPHIPSLVSVYPTNDWHERET 192

Query: 117 WDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKV 162
           +D +G+ F+GHP L RI+    ++G P RKD+P+ G + + Y    
Sbjct: 193 YDFFGLIFDGHPALTRIMMPDDWQGFPQRKDYPLGG-IPVEYKGAQ 237


>gi|293191718|ref|ZP_06609275.1| NADH dehydrogenase I, C subunit [Actinomyces odontolyticus F0309]
 gi|292820490|gb|EFF79472.1| NADH dehydrogenase I, C subunit [Actinomyces odontolyticus F0309]
          Length = 245

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 43/150 (28%), Positives = 67/150 (44%), Gaps = 5/150 (3%)

Query: 8   LGDYIVNS---FSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD 64
           L + I       +  +       G+L + +    +  +  +LRDD    F   +   G  
Sbjct: 76  LEELIAADGLDVADVIEKVTVDRGQLGIFIAREHIARVAKYLRDDADLRFEMCLGTNGAH 135

Query: 65  FL-SRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPS-IVGIYPGADWFEREVWDMYGI 122
           +   +      +Y   S  +NR +R+++   +       IV +YPG DW ERE WD+ GI
Sbjct: 136 YPLDKGRELHAIYPLYSITHNRMIRLEVTCPDEDPRIPSIVSVYPGNDWQERETWDLIGI 195

Query: 123 FFEGHPDLRRILTDYGFEGHPLRKDFPVTG 152
            F GHP L R      + GHP RKD+P+ G
Sbjct: 196 VFTGHPSLTRTAMPDDWVGHPQRKDYPLGG 225


>gi|46446195|ref|YP_007560.1| putative NADH-ubiquinone oxidoreductase chain C/D [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46399836|emb|CAF23285.1| putative NADH-ubiquinone oxidoreductase chain C/D [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 174

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 51/168 (30%), Positives = 93/168 (55%), Gaps = 2/168 (1%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M  +I  + D+I  +F   +       GE + +V+ G L  + +FL+    C F  ++DL
Sbjct: 1   MTSQI--VLDHIKKNFQAFILNQTLEFGETTFEVNRGGLKIILNFLKIHEDCQFEVLMDL 58

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMY 120
             VD+L    R  ++Y   +     R+R+ I +  G+ +P++  ++ GA+W+ERE++DM+
Sbjct: 59  TAVDYLFPVKRTQILYFLQNFSRLDRIRIGITIERGEMLPTVTDLWEGANWYERELFDMF 118

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYR 168
           G+ F+GHP+L RIL    + GHP+ +D+ +T  V    ++   KV  +
Sbjct: 119 GVEFKGHPELSRILMPDHWLGHPMLRDYALTEEVVQFKNNVKPKVPSQ 166


>gi|329935995|ref|ZP_08285795.1| NADH dehydrogenase subunit C [Streptomyces griseoaurantiacus M045]
 gi|329304473|gb|EGG48351.1| NADH dehydrogenase subunit C [Streptomyces griseoaurantiacus M045]
          Length = 257

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 10/166 (6%)

Query: 6   EDLGDYIVNSF-------SGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNII 58
           +++ D +  +           +   +   GEL+  ++   L ++   LRDDP   F    
Sbjct: 82  DEVADELEGALEEQGLVPGNVIDRTIVDRGELTFHIEREFLPAVAKTLRDDPALRFELCT 141

Query: 59  DLCGVDFLSRSNR-FDVVYHFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREV 116
            +  V +     R    VYH  S  +NR +R++++  +    +PS+V +YP  DW ERE 
Sbjct: 142 GVSAVHYPGDKGRELHAVYHLRSLTHNRLIRLEVSAPDADPHIPSLVAVYPTNDWHEREA 201

Query: 117 WDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKV 162
           +D +GI F+GHP L RI+    ++GHP RKD+P+ G + + Y    
Sbjct: 202 YDFFGIVFDGHPALTRIMMPDDWQGHPQRKDYPLGG-IPVEYKGAQ 246


>gi|307328623|ref|ZP_07607796.1| NADH (or F420H2) dehydrogenase, subunit C [Streptomyces
           violaceusniger Tu 4113]
 gi|306885735|gb|EFN16748.1| NADH (or F420H2) dehydrogenase, subunit C [Streptomyces
           violaceusniger Tu 4113]
          Length = 247

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 6/162 (3%)

Query: 6   EDLGDYIVNS--FSG-SVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
           ++L   +         ++   V    EL+  +    L  +   LRDDP   F     + G
Sbjct: 76  DELEGALEEQSLLPENAIEKTVVDRDELTFHIAREHLPRVARTLRDDPALRFELCTGVSG 135

Query: 63  VDFLSRSNR-FDVVYHFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMY 120
           V F     R    VYH  S  + R +R+++   +    +PSIV +YP  DW ERE +D +
Sbjct: 136 VHFPGDKGRELHAVYHLRSLTHGRVVRLEVCAPDSDPHIPSIVDVYPTNDWHERETYDFF 195

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKV 162
           G+ F+GHP L RI+    ++G P RKD+P+ G + + Y    
Sbjct: 196 GLIFDGHPALTRIMMPDDWQGFPQRKDYPLGG-IPVEYKGAQ 236


>gi|157166916|gb|ABV25438.1| NADH dehydrogenase subunit 9 [Silene latifolia]
          Length = 131

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 63/118 (53%), Positives = 85/118 (72%)

Query: 40  VSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV 99
             L  FL+   +  F  +ID+CGVD+ SR  RF+VVY+ LS +YN R+RV+ +  E   +
Sbjct: 14  FQLLCFLKLHTYTRFQVLIDICGVDYPSRKLRFEVVYNLLSTRYNSRIRVQTSADEVTRI 73

Query: 100 PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELH 157
             +V ++P A  +EREVWDM+G+ F  HPDLRRILTDYGFEGHPLRKDFP++G+VE+ 
Sbjct: 74  SPVVSLFPSAGRWEREVWDMFGVSFINHPDLRRILTDYGFEGHPLRKDFPLSGYVEVR 131


>gi|302559105|ref|ZP_07311447.1| NADH dehydrogenase I, C subunit [Streptomyces griseoflavus Tu4000]
 gi|302476723|gb|EFL39816.1| NADH dehydrogenase I, C subunit [Streptomyces griseoflavus Tu4000]
          Length = 249

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 6/162 (3%)

Query: 6   EDLGDYIVNS--FSG-SVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
           ++L   +         ++   V   GEL+  ++   LV +   LRDDP   F     + G
Sbjct: 78  DELEGALEEQDLLPENAIERTVVDRGELTFHIEREHLVRVARTLRDDPALRFELCTGVSG 137

Query: 63  VDFL-SRSNRFDVVYHFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMY 120
           V +   +      VYH  S  +NR +R++++  +    +PS+  +YP  DW ERE +D +
Sbjct: 138 VHYPNDKGRELHAVYHLRSITHNRLIRLEVSAPDSDPHIPSLFSVYPTNDWHERETYDFF 197

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKV 162
           GI F+GHP L RI+    ++G P RKD+P+ G + + Y    
Sbjct: 198 GIVFDGHPALTRIMMPDDWQGFPQRKDYPLGG-IPVEYKGAQ 238


>gi|320009202|gb|ADW04052.1| NADH (or F420H2) dehydrogenase, subunit C [Streptomyces
           flavogriseus ATCC 33331]
          Length = 238

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 6/162 (3%)

Query: 6   EDLGDYIVNS--FS-GSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
           ++L   +         ++   V   GE++  V    LV +   LRDDP   F     + G
Sbjct: 67  DELEGALEEQDLLPANALEKTVVDRGEITFFVAREHLVQVARTLRDDPALRFELCTGVSG 126

Query: 63  VDFLSRSNR-FDVVYHFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMY 120
           V +     R    VYH  S  + R +R++++  +    +PS+VG+YP  DW ERE +D +
Sbjct: 127 VHYPGDKGRELHAVYHLRSLTHGRLIRLEVSAPDSDPHIPSLVGVYPTNDWHERETYDFF 186

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKV 162
           G+ F+GHP L RI+    ++G P RKD+P+ G + + Y    
Sbjct: 187 GLIFDGHPALTRIMMPDDWQGFPQRKDYPLGG-IAVEYKGAQ 227


>gi|282860721|ref|ZP_06269787.1| NADH (or F420H2) dehydrogenase, subunit C [Streptomyces sp. ACTE]
 gi|282564457|gb|EFB69993.1| NADH (or F420H2) dehydrogenase, subunit C [Streptomyces sp. ACTE]
          Length = 238

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/162 (30%), Positives = 80/162 (49%), Gaps = 6/162 (3%)

Query: 6   EDLGDYIVNS--FSG-SVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
           ++L   +         ++   V   GEL+  +    L  +   LRDDP   F     + G
Sbjct: 67  DELEGALEEQDLLPSEAIEKTVVDRGELTFHIAREHLPRVARTLRDDPALRFELCTGVSG 126

Query: 63  VDFLSRSNR-FDVVYHFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMY 120
           V +L    R    VYH  S  + R +R++++  +    +PS+V +YP  DW ERE +D +
Sbjct: 127 VHYLGDKGRELHAVYHLRSLTHGRLIRLEVSTPDSDPHIPSLVEVYPTNDWHERETYDFF 186

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKV 162
           G+ F+GHP L RI+    ++G P RKD+P+ G + + Y    
Sbjct: 187 GLVFDGHPALTRIMMPDDWQGFPQRKDYPLGG-IAVEYKGAQ 227


>gi|182436775|ref|YP_001824494.1| NADH dehydrogenase subunit C [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326777370|ref|ZP_08236635.1| NAD(P)H-quinone oxidoreductase subunit J [Streptomyces cf. griseus
           XylebKG-1]
 gi|178465291|dbj|BAG19811.1| putative NADH dehydrogenase chain C [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326657703|gb|EGE42549.1| NAD(P)H-quinone oxidoreductase subunit J [Streptomyces cf. griseus
           XylebKG-1]
          Length = 243

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 6/162 (3%)

Query: 6   EDLGDYIVNS--FSG-SVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
           ++L   +         ++   V    EL+  +    LV +   LRDDP   F     + G
Sbjct: 72  DELEGALEEQDLLPSNAIEKTVVDRAELTFHIAREHLVQVARTLRDDPALRFELCTGVSG 131

Query: 63  VDFLSRSNR-FDVVYHFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMY 120
           V F     R    VYH  S  + R +R++++  +    +PS+V +YP  DW ERE +D +
Sbjct: 132 VHFPGDKGRELHAVYHLRSLTHGRVIRLEVSAPDSDPHIPSLVEVYPTNDWHEREAYDFF 191

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKV 162
           G+ F+GHP L RI+    ++G P RKD+P+ G + + Y    
Sbjct: 192 GLVFDGHPALTRIMMPDDWQGFPQRKDYPLGG-IAVEYKGAQ 232


>gi|297192786|ref|ZP_06910184.1| NADH-quinone oxidoreductase subunit C/D [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197721027|gb|EDY64935.1| NADH-quinone oxidoreductase subunit C/D [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 242

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 10/166 (6%)

Query: 6   EDLGDYIVNSFS-------GSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNII 58
           +++ D +  +          +V   V   GEL+  +    L+ +   LRDDP   F    
Sbjct: 67  DEVADELEGALEEQGIVPEDAVEKTVVDRGELTFHIAREHLLQVARTLRDDPALRFELCT 126

Query: 59  DLCGVDFLSRSNR-FDVVYHFLSPKYNRRLRVKIAVA-EGKSVPSIVGIYPGADWFEREV 116
            + GV +L    R    VYH  S  + R +R++++       VPS+V +YP  DW ERE 
Sbjct: 127 GVSGVHYLEDKGRELHAVYHLRSLTHGRLIRLEVSAPDRDPHVPSLVSVYPTNDWHERET 186

Query: 117 WDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKV 162
           +D +G+ F+GHP L RI+    ++G P RKD+P+ G + + Y    
Sbjct: 187 YDFFGLVFDGHPALTRIMMPDDWQGFPQRKDYPLGG-IAVEYKGAQ 231


>gi|302521196|ref|ZP_07273538.1| NADH dehydrogenase subunit C [Streptomyces sp. SPB78]
 gi|302430091|gb|EFL01907.1| NADH dehydrogenase subunit C [Streptomyces sp. SPB78]
          Length = 420

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 52/143 (36%), Positives = 78/143 (54%), Gaps = 3/143 (2%)

Query: 22  FAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNR-FDVVYHFLS 80
             V   GEL+  V+   LV +   LRDDP   F     + GV +     R    VYH  S
Sbjct: 268 KTVVDRGELTFHVEREHLVQVARTLRDDPALRFELCTGVSGVHYPGDKGRELHAVYHLRS 327

Query: 81  PKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGF 139
             +NR +RV+++V +  + +PS+V +YP  DW ERE +D +G+ F+GHP L RI+    +
Sbjct: 328 ITHNRLIRVEVSVPDADRHLPSLVALYPTNDWHERETYDFFGLIFDGHPALTRIMMPDDW 387

Query: 140 EGHPLRKDFPVTGFVELHYDDKV 162
           +G P RKD+P+ G + + Y    
Sbjct: 388 QGFPQRKDYPLGG-IPVEYKGAQ 409


>gi|318057841|ref|ZP_07976564.1| NADH dehydrogenase subunit C [Streptomyces sp. SA3_actG]
 gi|318078939|ref|ZP_07986271.1| NADH dehydrogenase subunit C [Streptomyces sp. SA3_actF]
          Length = 272

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/162 (33%), Positives = 84/162 (51%), Gaps = 6/162 (3%)

Query: 6   EDLGDYIVNS--FSGSVR-FAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
           ++L   +        +V    V   GEL+  V+   LV +   LRDDP   F     + G
Sbjct: 101 DELEGALEEQGLVPENVLWKTVVDRGELTFHVEREHLVQVARTLRDDPALRFELCTGVSG 160

Query: 63  VDFLSRSNR-FDVVYHFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMY 120
           V +     R    VYH  S  +NR +RV+++V +  + +PS+V +YP  DW ERE +D +
Sbjct: 161 VHYPGDKGRELHAVYHLRSITHNRLIRVEVSVPDADRHLPSLVALYPTNDWHERETYDFF 220

Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKV 162
           G+ F+GHP L RI+    ++G P RKD+P+ G + + Y    
Sbjct: 221 GLIFDGHPALTRIMMPDDWQGFPQRKDYPLGG-IPVEYKGAQ 261


>gi|325003722|ref|ZP_08124834.1| NADH dehydrogenase subunit C [Pseudonocardia sp. P1]
          Length = 271

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/141 (38%), Positives = 74/141 (52%), Gaps = 6/141 (4%)

Query: 18  GSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNI-----IDLCGVDFLSRSNRF 72
            ++        E++L V    L ++   LRDDP   F        +D    D        
Sbjct: 111 DAIEQVTIDRDEMTLYVLPDKLNAVARTLRDDPGLRFEFCATVSGVDYSAPDGSPVDRPV 170

Query: 73  DVVYHFLSPKYNRRLRVKIAVA-EGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLR 131
            V YH LS  Y RR+R+++A+  E   V S+V +YP ADW ERE WDM+G+ F+GHP L 
Sbjct: 171 HVAYHLLSMTYRRRIRLEVALDIENLHVDSVVDVYPTADWHERETWDMFGVVFDGHPALT 230

Query: 132 RILTDYGFEGHPLRKDFPVTG 152
           RIL    +EGHP RK +P+ G
Sbjct: 231 RILMPDDWEGHPQRKSYPLGG 251


>gi|118468371|ref|YP_886422.1| NADH dehydrogenase subunit C [Mycobacterium smegmatis str. MC2 155]
 gi|218534326|sp|A0QU34|NUOC_MYCS2 RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|118169658|gb|ABK70554.1| NADH-quinone oxidoreductase chain c [Mycobacterium smegmatis str.
           MC2 155]
          Length = 238

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/151 (33%), Positives = 83/151 (54%), Gaps = 3/151 (1%)

Query: 5   IEDLGDYI-VNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGV 63
           ++ L + +    ++ S+   V    +L+++V    L ++ S LRDDP   F   + + GV
Sbjct: 68  MDRLAEVLGEERYAMSIERVVVYRDQLTIEVSRVQLPAVASVLRDDPDLRFELCLGVSGV 127

Query: 64  DFLSR-SNRFDVVYHFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMYG 121
            +          VY  +S  +NRR+++++A  +    +PS+  +YP  DW ERE +D +G
Sbjct: 128 HYPEDTGRELHAVYPLMSITHNRRIQLEVAAPDADPHIPSLYAVYPTTDWHERETYDFFG 187

Query: 122 IFFEGHPDLRRILTDYGFEGHPLRKDFPVTG 152
           I F+GHP L RI     +EGHP RKD+P+ G
Sbjct: 188 IIFDGHPSLTRIEMPDDWEGHPQRKDYPLGG 218


>gi|255708934|gb|ACU30372.1| NADH dehydrogenase subunit 9 [Heliosperma pusillum]
          Length = 131

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 63/118 (53%), Positives = 85/118 (72%)

Query: 40  VSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSV 99
             L  FL+   +  F  +ID+CGVD+ SR  RF+VVY+ LS +YN R+RV+ +  E   +
Sbjct: 14  FQLLCFLKLHTYTRFQVLIDICGVDYPSRKLRFEVVYNLLSTRYNSRIRVQTSADEVTRI 73

Query: 100 PSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELH 157
             +V ++P A  +EREVWDM+G+ F  HPDLRRILTDYGFEGHPLRKDFP++G+VE+ 
Sbjct: 74  SPVVSLFPSAGRWEREVWDMFGVSFINHPDLRRILTDYGFEGHPLRKDFPLSGYVEVR 131


>gi|54024634|ref|YP_118876.1| NADH dehydrogenase subunit C [Nocardia farcinica IFM 10152]
 gi|81823071|sp|Q5YWC9|NUOC_NOCFA RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|54016142|dbj|BAD57512.1| putative NADH dehydrogenase I chain C [Nocardia farcinica IFM
           10152]
          Length = 253

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/139 (37%), Positives = 72/139 (51%), Gaps = 2/139 (1%)

Query: 16  FSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSR-SNRFDV 74
           F  ++   V   GEL+L V    LV++   LRDDP   F   + + GV +          
Sbjct: 95  FGSALEKIVVFRGELTLHVRREHLVTVARLLRDDPALRFELCLGVNGVHYPDDAGRELHA 154

Query: 75  VYHFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRI 133
           VY   S  +NR LRV+    +    +PS+  +YP  DW ERE +D +GI F+GHP L RI
Sbjct: 155 VYPLRSITHNRLLRVETCAPDTDPHIPSLFEVYPTTDWHERETYDFFGILFDGHPSLTRI 214

Query: 134 LTDYGFEGHPLRKDFPVTG 152
                + GHP RKD+P+ G
Sbjct: 215 TMPDDWRGHPQRKDYPLGG 233


>gi|282891848|ref|ZP_06300328.1| hypothetical protein pah_c198o041 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498281|gb|EFB40620.1| hypothetical protein pah_c198o041 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 173

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/142 (35%), Positives = 88/142 (61%), Gaps = 4/142 (2%)

Query: 10  DYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRS 69
           + + N    ++      +GE +L+V   +L+ + S+L+ D    +  ++DL GVD++  +
Sbjct: 8   ENLKNHCPEAILAQKQFLGETTLEVQKENLIKVLSYLKHD----YEVLMDLTGVDYVDPT 63

Query: 70  NRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPD 129
               VVY   +PK   R+RV + V   + +PS+  ++ GA W+ERE++D++G+  EGHPD
Sbjct: 64  PYTKVVYWLHNPKNFERIRVIVFVEREEPIPSVTCLWDGAAWYERELFDLFGVPIEGHPD 123

Query: 130 LRRILTDYGFEGHPLRKDFPVT 151
           L+RIL    ++GHPLR+D+P+T
Sbjct: 124 LKRILMPDDWKGHPLRRDYPLT 145


>gi|108798548|ref|YP_638745.1| NADH dehydrogenase subunit C [Mycobacterium sp. MCS]
 gi|119867648|ref|YP_937600.1| NADH dehydrogenase subunit C [Mycobacterium sp. KMS]
 gi|126434146|ref|YP_001069837.1| NADH dehydrogenase subunit C [Mycobacterium sp. JLS]
 gi|122977219|sp|Q1BBP5|NUOC_MYCSS RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|218534303|sp|A1UDA2|NUOC_MYCSK RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|218534308|sp|A3PWR9|NUOC_MYCSJ RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
           Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1
           subunit C
 gi|108768967|gb|ABG07689.1| NADH dehydrogenase subunit C [Mycobacterium sp. MCS]
 gi|119693737|gb|ABL90810.1| NADH dehydrogenase subunit C [Mycobacterium sp. KMS]
 gi|126233946|gb|ABN97346.1| NADH dehydrogenase subunit C [Mycobacterium sp. JLS]
          Length = 231

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/154 (31%), Positives = 77/154 (50%), Gaps = 7/154 (4%)

Query: 6   EDLGDYIVNSFS-----GSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           +++ D +  +        SV   V    EL+L++    L  +   LRDD    F   + +
Sbjct: 58  DEVVDALAAALGQDLYDASVERIVVYRDELTLEIARARLPVVAKTLRDDAALRFELCLGV 117

Query: 61  CGVDFLSR-SNRFDVVYHFLSPKYNRRLRVKIAVAEGKS-VPSIVGIYPGADWFEREVWD 118
            GV +           Y  +S  +NRR+R+++A  +    +PS+  +YP  DW ERE +D
Sbjct: 118 SGVHYPGDAGRELHAAYPLMSITHNRRIRLEVAAPDDDPHIPSLFSVYPTTDWHERETYD 177

Query: 119 MYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTG 152
            +GI F+GHP L RI     + GHP RKD+P+ G
Sbjct: 178 FFGIIFDGHPSLTRIEMPDDWVGHPQRKDYPLGG 211


>gi|262200418|ref|YP_003271626.1| NADH (or F420H2) dehydrogenase subunit C [Gordonia bronchialis DSM
           43247]
 gi|262083765|gb|ACY19733.1| NADH (or F420H2) dehydrogenase, subunit C [Gordonia bronchialis DSM
           43247]
          Length = 227

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/159 (32%), Positives = 78/159 (49%), Gaps = 7/159 (4%)

Query: 6   EDLGDYIVNSFSG----SVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLC 61
           +++ D +    S     ++   V    E++L V    L  +   LR+ P   F   + + 
Sbjct: 55  DEIADLLETELSDDYSDAIEKVVVFRDEMTLHVSRTHLRQVALLLRNHPDLRFELCLGVN 114

Query: 62  GVDFLSR-SNRFDVVYHFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDM 119
           GV +          VY   S  + RRLR++++  +    +PSI  IYP  DW ERE +D 
Sbjct: 115 GVHYPDDAGRELHAVYPLTSITHKRRLRLEVSAPDADPHIPSICDIYPTNDWHERETYDF 174

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHY 158
           +GI F+GH  L RI     +EGHP RKD+P+ G V + Y
Sbjct: 175 FGIIFDGHRSLTRIEMPDDWEGHPQRKDYPLGG-VPVEY 212


>gi|219847964|ref|YP_002462397.1| NADH (or F420H2) dehydrogenase subunit C [Chloroflexus aggregans
           DSM 9485]
 gi|219542223|gb|ACL23961.1| NADH (or F420H2) dehydrogenase, subunit C [Chloroflexus aggregans
           DSM 9485]
          Length = 172

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/166 (31%), Positives = 88/166 (53%), Gaps = 4/166 (2%)

Query: 1   MVRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDL 60
           M    + +   + +     +       G++S+ +     ++    LRDDP   +  + +L
Sbjct: 1   MNN--QTVLAVLRDRVGKEIVAVNEFRGDVSVTLTPSGYLAAAQLLRDDPELAYTFLENL 58

Query: 61  CGVDFLSRSNRFDVVYHFLSPKYNRRLRVKI-AVAEGKSVPSIVGIYPGADWFEREVWDM 119
           CGVD+L R  RF+VV H  S ++  R+ +K+       +VPS+  ++P A++ ERE +D+
Sbjct: 59  CGVDYLGRKPRFEVVAHLTSMRHRHRVCLKVGCDEPNPTVPSLTPLFPTANYQERETFDL 118

Query: 120 YGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKV 165
            GI F GHP L RIL    + GHPLRKD+P+ G  E+ +     ++
Sbjct: 119 LGITFTGHPSLTRILLPEDWIGHPLRKDYPL-GEEEVAFTFNQDRI 163


>gi|290958258|ref|YP_003489440.1| NADH dehydrogenase subunit NuoC [Streptomyces scabiei 87.22]
 gi|260647784|emb|CBG70889.1| NuoC, NADH dehydrogenase subunit [Streptomyces scabiei 87.22]
          Length = 247

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 10/166 (6%)

Query: 6   EDLGDYIVNSFSGS-------VRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNII 58
           +++ D +  +           +   V   GE++  ++   L ++   LRDDP   F    
Sbjct: 72  DEVADELEGALEEQGLVPENVIDKTVVDRGEITFHIEREHLPTVARTLRDDPALRFELCT 131

Query: 59  DLCGVDFLSRSNR-FDVVYHFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREV 116
            + GV +     R    VYH  S  +NR +R++++  +    +PS+V +YP  DW ERE 
Sbjct: 132 GVSGVHYPGDKGRELHAVYHLRSITHNRLIRLEVSAPDADPHIPSLVPVYPTNDWHERET 191

Query: 117 WDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKV 162
           +D +GI F+GHP L RI+    ++G P RKD+P+ G + + Y    
Sbjct: 192 YDFFGIVFDGHPALTRIMMPDDWQGFPQRKDYPLGG-IPVEYKGAQ 236


>gi|254391139|ref|ZP_05006346.1| NADH-quinone oxidoreductase subunit C/D [Streptomyces clavuligerus
           ATCC 27064]
 gi|294814396|ref|ZP_06773039.1| NADH-quinone oxidoreductase subunit C [Streptomyces clavuligerus
           ATCC 27064]
 gi|326442786|ref|ZP_08217520.1| NADH dehydrogenase subunit C [Streptomyces clavuligerus ATCC 27064]
 gi|197704833|gb|EDY50645.1| NADH-quinone oxidoreductase subunit C/D [Streptomyces clavuligerus
           ATCC 27064]
 gi|294326995|gb|EFG08638.1| NADH-quinone oxidoreductase subunit C [Streptomyces clavuligerus
           ATCC 27064]
          Length = 242

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 10/166 (6%)

Query: 6   EDLGDYIVNSFSG-------SVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNII 58
           +++ D +  +          ++   V   GEL+  ++   L+ +   LRDDP   F    
Sbjct: 67  DEVADELEGALEEQGLVPEHAIAQTVVDRGELTFHIEREHLLQVARTLRDDPALRFELCT 126

Query: 59  DLCGVDFLSRSNR-FDVVYHFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREV 116
            + GV +     R    VYH  S  + R +RV+++  +    +PS+V +YP  DW ERE 
Sbjct: 127 GVSGVHYPEDKGRELHAVYHLRSLTHGRLIRVEVSAPDADPHIPSLVSVYPTNDWHERET 186

Query: 117 WDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKV 162
           +D +G+ F+GHP L RI+    ++G P RKD+P+ G + + Y    
Sbjct: 187 YDFFGLVFDGHPALTRIMMPDDWQGFPQRKDYPLGG-IAVEYKGAQ 231


>gi|255533961|ref|YP_003094333.1| NADH (or F420H2) dehydrogenase subunit C [Pedobacter heparinus DSM
           2366]
 gi|255346945|gb|ACU06271.1| NADH (or F420H2) dehydrogenase, subunit C [Pedobacter heparinus DSM
           2366]
          Length = 170

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 5/161 (3%)

Query: 1   MVRKIED-LGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRD---DPHCCFVN 56
           M   I   + + +   F   V       G L+ +     ++ +  FL+D   +    F  
Sbjct: 1   MAELINQAIVEALGAKFGDKVIGVNEPYGLLTFETTKDVIIEVLKFLKDSGENDVTGFNF 60

Query: 57  IIDLCGVDFLSRSNRFDVVYHFLSPKYNRRLRVKIAVAEGKSVPSI-VGIYPGADWFERE 115
           + D+  V +  + +   VVYH  +     R+R+K+ + E   V      I+ GA+W ERE
Sbjct: 61  LTDITAVHYPEKKHGIAVVYHLHNMVKKVRVRIKVFIDEHNPVIPTATSIWNGANWMERE 120

Query: 116 VWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVEL 156
            +D++G+ FEGHPDLRRIL       HP+ K +P+     +
Sbjct: 121 TYDLFGVKFEGHPDLRRILNMDELGVHPMLKQYPLEDPNRV 161


>gi|311897892|dbj|BAJ30300.1| putative NADH-quinone oxidoreductase subunit C [Kitasatospora setae
           KM-6054]
          Length = 240

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 3/147 (2%)

Query: 18  GSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNR-FDVVY 76
             +   V   GEL+  +D   L+     LRDDP   F   + + GV +     R    VY
Sbjct: 84  DVIEKTVVDRGELTFHLDRAHLLKAVRTLRDDPALRFELCLGVSGVHYPQDKGRELHAVY 143

Query: 77  HFLSPKYNRRLRVKIAVAEGKSVPS-IVGIYPGADWFEREVWDMYGIFFEGHPDLRRILT 135
           H  S  + R +R+++   +       +V +YP  DW ERE +D +G+ FEGHP L RI+ 
Sbjct: 144 HLRSITHTRLIRLEVTAPDADPRIPSVVSVYPTNDWHERETYDFFGLVFEGHPALTRIMM 203

Query: 136 DYGFEGHPLRKDFPVTGFVELHYDDKV 162
              + GHP RKD+P+ G + + Y    
Sbjct: 204 PDDWLGHPQRKDYPLGG-IPVEYKGAQ 229


>gi|269955279|ref|YP_003325068.1| NADH (or F420H2) dehydrogenase subunit C [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269303960|gb|ACZ29510.1| NADH (or F420H2) dehydrogenase, subunit C [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 283

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/159 (32%), Positives = 77/159 (48%), Gaps = 9/159 (5%)

Query: 3   RKIEDLGDYIVNS---FSGSVRFAVN----SVGELSLDVDCGDLVSLCSFLRDDPHCCFV 55
             ++ L + +      F  ++   V        EL+L V    L+++   LRDD    F 
Sbjct: 105 EAVDVLAEVLAEQGIGFDQAIERVVVDPPGKHAELTLWVAREHLLAVARALRDDQDLRFE 164

Query: 56  NIIDLCGVDFLSR-SNRFDVVYHFLSPKYNRRLRVKIAV-AEGKSVPSIVGIYPGADWFE 113
             + + GV +          VYH  S  + RRLR+++A     + +PS   +YP  DW E
Sbjct: 165 LSLGVSGVHYPHDAGRELHAVYHLTSVTHGRRLRLEVATADADRHIPSTTSVYPTNDWHE 224

Query: 114 REVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTG 152
           RE +D +GI F+GHP L RI     + GHP RKD+P+ G
Sbjct: 225 RETYDFFGIVFDGHPGLARIEMPDDWPGHPQRKDYPLGG 263


>gi|326329612|ref|ZP_08195934.1| NADH dehydrogenase I, C subunit [Nocardioidaceae bacterium Broad-1]
 gi|325952608|gb|EGD44626.1| NADH dehydrogenase I, C subunit [Nocardioidaceae bacterium Broad-1]
          Length = 212

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/145 (40%), Positives = 76/145 (52%), Gaps = 4/145 (2%)

Query: 10  DYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFL-SR 68
             I ++ + +   AV   GEL+  V    L+     LRD     F     + GV +    
Sbjct: 50  KEIADALAFTEAEAVIHRGELTFHVRRERLLEALQVLRD--ELRFELCSGVSGVHYPADL 107

Query: 69  SNRFDVVYHFLSPKYNRRLRVKIAVAEGKS-VPSIVGIYPGADWFEREVWDMYGIFFEGH 127
                 VYH LS  YNRR+RV+ +  +    VPS VGIYP  DW ERE +DM+GI F+GH
Sbjct: 108 GKELHAVYHLLSMTYNRRVRVETSAPDEDPHVPSGVGIYPTLDWHERETYDMFGIVFDGH 167

Query: 128 PDLRRILTDYGFEGHPLRKDFPVTG 152
           P L RIL    + GHP RKD+P+ G
Sbjct: 168 PGLTRILMPDDWPGHPQRKDYPLGG 192


>gi|297159510|gb|ADI09222.1| NADH dehydrogenase subunit C [Streptomyces bingchenggensis BCW-1]
          Length = 244

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 10/166 (6%)

Query: 6   EDLGDYIVNSFSG-------SVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNII 58
           +++ D +  +          ++   V    EL+  +    L  +   LRDDP   F    
Sbjct: 69  DEVADELEGALEEQSLVPENAIEKTVVDRDELTFHIAREHLPRVARTLRDDPALRFELCT 128

Query: 59  DLCGVDFLSRSNR-FDVVYHFLSPKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREV 116
            + G