RPSBLAST alignment of GI: 254780854 and protein with PDBid: 3i9v
>3i9v_5 NADH-quinone oxidoreductase subunit 5; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_5* 3iam_5* 3ias_5* Length = 207
Score = 134 bits (337), Expect = 2e-32
Identities = 56/188 (29%), Positives = 87/188 (46%), Gaps = 32/188 (17%)
Query: 25 NSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLS----RSNRFDVVYHFLS 80
N +G L + + + + F + D+ G+D+L+ R RF VVY +S
Sbjct: 20 NGLGNLWVVLPRERFKEEMAHYKA---MGFNFLADIVGLDYLTYPDPRPERFAVVYELVS 76
Query: 81 PKY-----NRRLRVKIAV-AEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRIL 134
R V++ V E +P++ ++ A++ EREV+D++GI FEGHPDLR+IL
Sbjct: 77 LPGWKDGDGSRFFVRVYVPEEDPRLPTVTDLWGSANFLEREVYDLFGIVFEGHPDLRKIL 136
Query: 135 TDYGFEGHPLRKDFPV----TGFVELHY----------DDKVKKVVYRPVELMQEHRDYD 180
T EGHPLRKD+P+ T F E Y K + + + +R
Sbjct: 137 TPEDLEGHPLRKDYPLGETPTLFREGRYIIPAEFRAALTGKDPGLTFYKGGSRKGYR--- 193
Query: 181 FLSPWEGV 188
S W +
Sbjct: 194 --SLWADL 199