RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780854|ref|YP_003065267.1| NADH dehydrogenase subunit C
[Candidatus Liberibacter asiaticus str. psy62]
         (202 letters)



>d2fug51 d.307.1.1 (5:1-196) NADH-quinone oxidoreductase chain 5,
           Nqo5 {Thermus thermophilus [TaxId: 274]}
          Length = 196

 Score =  119 bits (300), Expect = 1e-28
 Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 15/173 (8%)

Query: 25  NSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLS----RSNRFDVVYHFLS 80
           N +G L + +         +  +      F  + D+ G+D+L+    R  RF VVY  +S
Sbjct: 20  NGLGNLWVVLPRERFKEEMAHYKA---MGFNFLADIVGLDYLTYPDPRPERFAVVYELVS 76

Query: 81  PKY-----NRRLRVKIAV-AEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRIL 134
                     R  V++ V  E   +P++  ++  A++ EREV+D++GI FEGHPDLR+IL
Sbjct: 77  LPGWKDGDGSRFFVRVYVPEEDPRLPTVTDLWGSANFLEREVYDLFGIVFEGHPDLRKIL 136

Query: 135 TDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEG 187
           T    EGHPLRKD+P+     L  +   + ++          +D        G
Sbjct: 137 TPEDLEGHPLRKDYPLGETPTLFRE--GRYIIPAEFRAALTGKDPGLTFYKGG 187


>d1t0ba_ c.23.16.6 (A:) GK2113 homologue {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 240

 Score = 29.6 bits (66), Expect = 0.22
 Identities = 16/126 (12%), Positives = 36/126 (28%), Gaps = 15/126 (11%)

Query: 70  NRFDVVYHFLSPKYN-----RRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG--I 122
           +R DV+  +    ++        RV   V EG  +   + ++ G          + G   
Sbjct: 61  DRCDVLVWWGHIAHDEVKDEVVERVHRRVLEGMGL---IVLHSGHFSK--IFKKLMGTTC 115

Query: 123 FFEGHPDLRRILTDYGFEGHPLRKDFPVTGFV---ELHYDDKVKKVVYRPVELMQEHRDY 179
             +      +        GHP+ +       +   E++ +          + +       
Sbjct: 116 NLKWREADEKERLWVVAPGHPIVEGIGPYIELEQEEMYGEFFDIPEPDETIFISWFEGGE 175

Query: 180 DFLSPW 185
            F S  
Sbjct: 176 VFRSGC 181


>d1cqxa1 a.1.1.2 (A:1-150) Flavohemoglobin, N-terminal domain
           {Alcaligenes eutrophus [TaxId: 106590]}
          Length = 150

 Score = 27.3 bits (60), Expect = 1.0
 Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 6/67 (8%)

Query: 118 DMYGIFFEGHPDLRRILTDYG--FEGHPLRKDFPVTGFVE-LHYDDKVKKVVYRPVELMQ 174
             Y   FE HP+L+ +                  V  + E +   + +  V+     +  
Sbjct: 27  CFYQRMFEAHPELKNVFNMAHQEQGQQQQALARAVYAYAENIEDPNSLMAVLKN---IAN 83

Query: 175 EHRDYDF 181
           +H     
Sbjct: 84  KHASLGV 90


>d1gvha1 a.1.1.2 (A:1-146) Flavohemoglobin, N-terminal domain
           {Escherichia coli [TaxId: 562]}
          Length = 146

 Score = 26.5 bits (58), Expect = 1.8
 Identities = 8/64 (12%), Positives = 21/64 (32%), Gaps = 6/64 (9%)

Query: 119 MYGIFFEGHPDLRRIL--TDYGFEGHPLRKDFPVTGFVE-LHYDDKVKKVVYRPVELMQE 175
            Y   F  +P+L+ I   ++             +  +   +     +   V +   + Q+
Sbjct: 28  FYDRMFTHNPELKEIFNMSNQRNGDQREALFNAIAAYASNIENLPALLPAVEK---IAQK 84

Query: 176 HRDY 179
           H  +
Sbjct: 85  HTSF 88


>d1u09a_ e.8.1.4 (A:) Viral RNA polymerase {Foot-and-mouth disease
           virus [TaxId: 12110]}
          Length = 476

 Score = 26.1 bits (57), Expect = 2.3
 Identities = 7/27 (25%), Positives = 8/27 (29%)

Query: 59  DLCGVDFLSRSNRFDVVYHFLSPKYNR 85
            +  V FL R    D    F  P    
Sbjct: 379 SITDVTFLKRHFHMDYGTGFYKPVMAS 405


>d2burb1 b.3.6.1 (B:303-540) Protocatechuate-3,4-dioxygenase, beta
           chain {Acinetobacter calcoaceticus, adp1 [TaxId: 471]}
          Length = 238

 Score = 25.4 bits (55), Expect = 3.5
 Identities = 9/52 (17%), Positives = 17/52 (32%)

Query: 104 GIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVE 155
           G YP  +                    +R+++ + FEG  L    P+   + 
Sbjct: 143 GPYPWRNRINEWRPAHIHFSLIADGWAQRLISQFYFEGDTLIDSCPILKTIP 194


>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 103

 Score = 25.5 bits (55), Expect = 3.8
 Identities = 13/91 (14%), Positives = 22/91 (24%), Gaps = 12/91 (13%)

Query: 27  VGELSLDVDCGDLVSLCSF---LRDDPHCCFVNIIDLCGVDFLSRSNRFDVV------YH 77
           VG L        L         + +             G  F++ ++R            
Sbjct: 15  VGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP 74

Query: 78  FLSPKYNRRLRVKIAVAEGKSVPSIVGIYPG 108
            +     R+  V +A    K      G   G
Sbjct: 75  II---DGRKANVNLAYLGAKPRSLQTGFAIG 102


>d1kr7a_ a.1.1.4 (A:) Nerve tissue mini-hemoglobin (neural globin)
           {Milky ribbon-worm (Cerebratulus lacteus) [TaxId: 6221]}
          Length = 110

 Score = 25.0 bits (54), Expect = 4.3
 Identities = 7/30 (23%), Positives = 12/30 (40%)

Query: 118 DMYGIFFEGHPDLRRILTDYGFEGHPLRKD 147
           D Y   F+ HP+ +      G     L+ +
Sbjct: 10  DFYQELFKAHPEYQNKFGFKGVALGSLKGN 39


>d1mpxa1 b.18.1.13 (A:405-637) Alpha-amino acid ester hydrolase
           {Xanthomonas citri [TaxId: 346]}
          Length = 233

 Score = 24.8 bits (53), Expect = 5.4
 Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 97  KSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVEL 156
           K VP +       D+ +R +W  + +  +   D R  +    F   PL +   + G  ++
Sbjct: 44  KPVPFVPR---PVDFADRAMWTTWLVHDQRFVDGRPDVLT--FVTEPLTEPLQIAGAPDV 98

Query: 157 H 157
           H
Sbjct: 99  H 99


>d1vhba_ a.1.1.2 (A:) Bacterial dimeric hemoglobin {Vitreoscilla
           stercoraria [TaxId: 61]}
          Length = 144

 Score = 24.9 bits (54), Expect = 5.5
 Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 3/44 (6%)

Query: 119 MYGIFFEGHPDLRRIL--TDYGFEGHPLRKDFPVTGFVELHYDD 160
            Y   F  HP++R +           P      V    + + ++
Sbjct: 27  FYKNLFAKHPEVRPLFDMGRQESLEQPKALAMTVLAAAQ-NIEN 69


>d2jm6b1 f.1.4.1 (B:147-308) EAT/MCL-1 (Myeloid cell leukemia
           sequence 1) {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 162

 Score = 24.5 bits (53), Expect = 6.2
 Identities = 13/81 (16%), Positives = 31/81 (38%), Gaps = 10/81 (12%)

Query: 119 MYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRD 178
           M  +F +G  +  RI+T   F     +          ++ +  ++ +     +++   + 
Sbjct: 85  MVHVFKDGVTNWGRIVTLISFGAFVAKH------LKSVNQESFIEPLAETITDVLVRTKR 138

Query: 179 YDFLSP---WEGVNSLFAKED 196
            D+L     W+G    F  +D
Sbjct: 139 -DWLVKQRGWDGFVEFFHVQD 158


>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A
           subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 356

 Score = 24.5 bits (52), Expect = 6.5
 Identities = 6/20 (30%), Positives = 13/20 (65%)

Query: 160 DKVKKVVYRPVELMQEHRDY 179
           +++KK  Y P+E   +++D 
Sbjct: 336 EELKKKAYAPMERFMQYKDL 355


>d2fi0a1 a.248.1.1 (A:3-81) Hypothetical protein SPr0485/SP0561
           {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 79

 Score = 23.9 bits (52), Expect = 9.2
 Identities = 6/16 (37%), Positives = 11/16 (68%)

Query: 125 EGHPDLRRILTDYGFE 140
           + HP++  IL + GF+
Sbjct: 18  DKHPEVLEILVELGFK 33


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.144    0.457 

Gapped
Lambda     K      H
   0.267   0.0593    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 869,899
Number of extensions: 43399
Number of successful extensions: 159
Number of sequences better than 10.0: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 16
Length of query: 202
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 121
Effective length of database: 1,295,466
Effective search space: 156751386
Effective search space used: 156751386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (23.7 bits)