RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780854|ref|YP_003065267.1| NADH dehydrogenase subunit C [Candidatus Liberibacter asiaticus str. psy62] (202 letters) >d2fug51 d.307.1.1 (5:1-196) NADH-quinone oxidoreductase chain 5, Nqo5 {Thermus thermophilus [TaxId: 274]} Length = 196 Score = 119 bits (300), Expect = 1e-28 Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 15/173 (8%) Query: 25 NSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLS----RSNRFDVVYHFLS 80 N +G L + + + + F + D+ G+D+L+ R RF VVY +S Sbjct: 20 NGLGNLWVVLPRERFKEEMAHYKA---MGFNFLADIVGLDYLTYPDPRPERFAVVYELVS 76 Query: 81 PKY-----NRRLRVKIAV-AEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRIL 134 R V++ V E +P++ ++ A++ EREV+D++GI FEGHPDLR+IL Sbjct: 77 LPGWKDGDGSRFFVRVYVPEEDPRLPTVTDLWGSANFLEREVYDLFGIVFEGHPDLRKIL 136 Query: 135 TDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEG 187 T EGHPLRKD+P+ L + + ++ +D G Sbjct: 137 TPEDLEGHPLRKDYPLGETPTLFRE--GRYIIPAEFRAALTGKDPGLTFYKGG 187 >d1t0ba_ c.23.16.6 (A:) GK2113 homologue {Bacillus stearothermophilus [TaxId: 1422]} Length = 240 Score = 29.6 bits (66), Expect = 0.22 Identities = 16/126 (12%), Positives = 36/126 (28%), Gaps = 15/126 (11%) Query: 70 NRFDVVYHFLSPKYN-----RRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG--I 122 +R DV+ + ++ RV V EG + + ++ G + G Sbjct: 61 DRCDVLVWWGHIAHDEVKDEVVERVHRRVLEGMGL---IVLHSGHFSK--IFKKLMGTTC 115 Query: 123 FFEGHPDLRRILTDYGFEGHPLRKDFPVTGFV---ELHYDDKVKKVVYRPVELMQEHRDY 179 + + GHP+ + + E++ + + + Sbjct: 116 NLKWREADEKERLWVVAPGHPIVEGIGPYIELEQEEMYGEFFDIPEPDETIFISWFEGGE 175 Query: 180 DFLSPW 185 F S Sbjct: 176 VFRSGC 181 >d1cqxa1 a.1.1.2 (A:1-150) Flavohemoglobin, N-terminal domain {Alcaligenes eutrophus [TaxId: 106590]} Length = 150 Score = 27.3 bits (60), Expect = 1.0 Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 6/67 (8%) Query: 118 DMYGIFFEGHPDLRRILTDYG--FEGHPLRKDFPVTGFVE-LHYDDKVKKVVYRPVELMQ 174 Y FE HP+L+ + V + E + + + V+ + Sbjct: 27 CFYQRMFEAHPELKNVFNMAHQEQGQQQQALARAVYAYAENIEDPNSLMAVLKN---IAN 83 Query: 175 EHRDYDF 181 +H Sbjct: 84 KHASLGV 90 >d1gvha1 a.1.1.2 (A:1-146) Flavohemoglobin, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 146 Score = 26.5 bits (58), Expect = 1.8 Identities = 8/64 (12%), Positives = 21/64 (32%), Gaps = 6/64 (9%) Query: 119 MYGIFFEGHPDLRRIL--TDYGFEGHPLRKDFPVTGFVE-LHYDDKVKKVVYRPVELMQE 175 Y F +P+L+ I ++ + + + + V + + Q+ Sbjct: 28 FYDRMFTHNPELKEIFNMSNQRNGDQREALFNAIAAYASNIENLPALLPAVEK---IAQK 84 Query: 176 HRDY 179 H + Sbjct: 85 HTSF 88 >d1u09a_ e.8.1.4 (A:) Viral RNA polymerase {Foot-and-mouth disease virus [TaxId: 12110]} Length = 476 Score = 26.1 bits (57), Expect = 2.3 Identities = 7/27 (25%), Positives = 8/27 (29%) Query: 59 DLCGVDFLSRSNRFDVVYHFLSPKYNR 85 + V FL R D F P Sbjct: 379 SITDVTFLKRHFHMDYGTGFYKPVMAS 405 >d2burb1 b.3.6.1 (B:303-540) Protocatechuate-3,4-dioxygenase, beta chain {Acinetobacter calcoaceticus, adp1 [TaxId: 471]} Length = 238 Score = 25.4 bits (55), Expect = 3.5 Identities = 9/52 (17%), Positives = 17/52 (32%) Query: 104 GIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVE 155 G YP + +R+++ + FEG L P+ + Sbjct: 143 GPYPWRNRINEWRPAHIHFSLIADGWAQRLISQFYFEGDTLIDSCPILKTIP 194 >d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Score = 25.5 bits (55), Expect = 3.8 Identities = 13/91 (14%), Positives = 22/91 (24%), Gaps = 12/91 (13%) Query: 27 VGELSLDVDCGDLVSLCSF---LRDDPHCCFVNIIDLCGVDFLSRSNRFDVV------YH 77 VG L L + + G F++ ++R Sbjct: 15 VGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP 74 Query: 78 FLSPKYNRRLRVKIAVAEGKSVPSIVGIYPG 108 + R+ V +A K G G Sbjct: 75 II---DGRKANVNLAYLGAKPRSLQTGFAIG 102 >d1kr7a_ a.1.1.4 (A:) Nerve tissue mini-hemoglobin (neural globin) {Milky ribbon-worm (Cerebratulus lacteus) [TaxId: 6221]} Length = 110 Score = 25.0 bits (54), Expect = 4.3 Identities = 7/30 (23%), Positives = 12/30 (40%) Query: 118 DMYGIFFEGHPDLRRILTDYGFEGHPLRKD 147 D Y F+ HP+ + G L+ + Sbjct: 10 DFYQELFKAHPEYQNKFGFKGVALGSLKGN 39 >d1mpxa1 b.18.1.13 (A:405-637) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} Length = 233 Score = 24.8 bits (53), Expect = 5.4 Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 5/61 (8%) Query: 97 KSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVEL 156 K VP + D+ +R +W + + + D R + F PL + + G ++ Sbjct: 44 KPVPFVPR---PVDFADRAMWTTWLVHDQRFVDGRPDVLT--FVTEPLTEPLQIAGAPDV 98 Query: 157 H 157 H Sbjct: 99 H 99 >d1vhba_ a.1.1.2 (A:) Bacterial dimeric hemoglobin {Vitreoscilla stercoraria [TaxId: 61]} Length = 144 Score = 24.9 bits (54), Expect = 5.5 Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 3/44 (6%) Query: 119 MYGIFFEGHPDLRRIL--TDYGFEGHPLRKDFPVTGFVELHYDD 160 Y F HP++R + P V + + ++ Sbjct: 27 FYKNLFAKHPEVRPLFDMGRQESLEQPKALAMTVLAAAQ-NIEN 69 >d2jm6b1 f.1.4.1 (B:147-308) EAT/MCL-1 (Myeloid cell leukemia sequence 1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 162 Score = 24.5 bits (53), Expect = 6.2 Identities = 13/81 (16%), Positives = 31/81 (38%), Gaps = 10/81 (12%) Query: 119 MYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRD 178 M +F +G + RI+T F + ++ + ++ + +++ + Sbjct: 85 MVHVFKDGVTNWGRIVTLISFGAFVAKH------LKSVNQESFIEPLAETITDVLVRTKR 138 Query: 179 YDFLSP---WEGVNSLFAKED 196 D+L W+G F +D Sbjct: 139 -DWLVKQRGWDGFVEFFHVQD 158 >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356 Score = 24.5 bits (52), Expect = 6.5 Identities = 6/20 (30%), Positives = 13/20 (65%) Query: 160 DKVKKVVYRPVELMQEHRDY 179 +++KK Y P+E +++D Sbjct: 336 EELKKKAYAPMERFMQYKDL 355 >d2fi0a1 a.248.1.1 (A:3-81) Hypothetical protein SPr0485/SP0561 {Streptococcus pneumoniae [TaxId: 1313]} Length = 79 Score = 23.9 bits (52), Expect = 9.2 Identities = 6/16 (37%), Positives = 11/16 (68%) Query: 125 EGHPDLRRILTDYGFE 140 + HP++ IL + GF+ Sbjct: 18 DKHPEVLEILVELGFK 33 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.325 0.144 0.457 Gapped Lambda K H 0.267 0.0593 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 869,899 Number of extensions: 43399 Number of successful extensions: 159 Number of sequences better than 10.0: 1 Number of HSP's gapped: 157 Number of HSP's successfully gapped: 16 Length of query: 202 Length of database: 2,407,596 Length adjustment: 81 Effective length of query: 121 Effective length of database: 1,295,466 Effective search space: 156751386 Effective search space used: 156751386 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 51 (23.7 bits)