HHsearch alignment for GI: 254780855 and conserved domain: CHL00017
>CHL00017 ndhH NADH dehydrogenase subunit 7.
Probab=100.00 E-value=0 Score=557.06 Aligned_cols=389 Identities=42% Similarity=0.691 Sum_probs=355.9
Q ss_pred CCCCCEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44561599840686866677559999983998999998804115788987409898785544312123448889999999
Q gi|254780855|r 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYAL 82 (396)
Q Consensus 3 ~~~~~~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~ 82 (396)
T Consensus 5 ~~~~~~~~l~vGP~Hp~~~g~~r~~l~ldGE~I~~~e~~~Gy~HRGiEKl~E~~~~~q~~~~~~R~~~~~~~~~~~~~~~ 84 (393)
T CHL00017 5 ATRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVN 84 (393)
T ss_pred CCCCCEEEEECCCCCCCCCCCCEEEEEECCCEEEEEEEECCCCCCHHHHHHCCCCHHHCCEEEEECCCCHHHHHHHHHHH
T ss_conf 87774499705897899977747999965978999784068010308677546976444242100002017678899999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCC
Q ss_conf 99998388578889999999999999998899987433430564189999999999997899755976476336536200
Q gi|254780855|r 83 AVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVH 162 (396)
Q Consensus 83 AiE~a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~ 162 (396)
T Consensus 85 AvE~l~gievP~RA~~iR~i~~ELeRI~sHl~~lg~~~~diG~~t~~~~~~~~RE~i~~l~e~ltG~R~~~~~~~iGGv~ 164 (393)
T CHL00017 85 APEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVA 164 (393)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 99998389999999999999999999999999999999986416899999999999999999973877644650138866
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCC
Q ss_conf 07898999999999999999999999998448333442122112303333102356651013676010210175443346
Q gi|254780855|r 163 QDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242 (396)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~G~~~~~~g~~~~~r~~~~~~~~~~ 242 (396)
T Consensus 165 ~Dl~~~~~~~~~~~l~~~~~~l~~~~~l~~~n~i~~~R~~gvGvls~e~A~~~g~~GP~aRASGv~~DvRk~~pY~~Y~~ 244 (393)
T CHL00017 165 ADLPYGWIDKCLDFCDYFLTGVAEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYECYDE 244 (393)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEECCCHHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCC
T ss_conf 78987899999999999999999999998579789998457301569999983981601012687421012277566331
Q ss_pred CCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 77540010123201221100011687589999999621035786720111123030448999975675430575557776
Q gi|254780855|r 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGY 322 (396)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~ 322 (396)
T Consensus 245 l~f~v~~~~~GD~~aR~~VR~~Ei~eSi~iI~q~l~~lP~Gp~~~~~~~~~~~~~~---~~~~~-~~~-~~~~~~~~~~~ 319 (393)
T CHL00017 245 FDWEVQWQKEGDSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLEARRFDREKD---PEWND-FEY-RFISKKPSPTF 319 (393)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC---HHHHH-HHH-HHHCCCCCCCC
T ss_conf 47677566676468878999999999999999999858899865543112466541---13444-456-64103556665
Q ss_pred CCCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 15897489999889511799999879980889998358756868899997088057599989760912055359
Q gi|254780855|r 323 HVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396 (396)
Q Consensus 323 ~~~~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT~~N~~~~e~al~G~~i~D~~~iirSfDpC~sC~dr 396 (396)
T Consensus 320 ~~P~ge~y~~vEapRGE~g~~~~sdg~~~pyR~kiR~Psf~n~~~l~~~~~G~~iaD~~~i~~S~D~v~ge~DR 393 (393)
T CHL00017 320 ELSKQELYVRVEAPKGELGIFLIGDQSVFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393 (393)
T ss_pred CCCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCC
T ss_conf 58997779988568822899999789994479999798715899999997799065899997180877688788