HHsearch alignment for GI: 254780855 and conserved domain: COG0374

>COG0374 HyaB Ni,Fe-hydrogenase I large subunit [Energy production and conversion].
Probab=100.00  E-value=0  Score=550.28  Aligned_cols=382  Identities=17%  Similarity=0.207  Sum_probs=271.8

Q ss_pred             EEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             98406868666775599999839989999988041157889874098987855443121234488899999999999838
Q gi|254780855|r   10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLG   89 (396)
Q Consensus        10 ~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~a~g   89 (396)
T Consensus         3 rIvvDPvT-RIEGhlrievevd~~~ItdA~-ssgtlfRG~E~ILkgRDPrDA~~~tqRICGVCt~~Ha~Asv~AlE~Alg   80 (545)
T COG0374           3 RIVVDPVT-RIEGHLRIEVEVEDGVITDAW-SSGTLFRGFEIILKGRDPRDAWAITQRICGVCTTSHALASVRALEDALG   80 (545)
T ss_pred             EEEECCCC-EEEEEEEEEEEECCCCEEEEE-ECCEEHHHHHHHHCCCCHHHHHHHHCHHCCCCCCHHHHHHHHHHHHHHC
T ss_conf             47845753-042047889997378533502-2211150699997389802556653400105751889999999998658


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------------------------------------
Q ss_conf             857888999999999999999889998743343056--------------------------------------------
Q gi|254780855|r   90 IEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA--------------------------------------------  125 (396)
Q Consensus        90 i~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~--------------------------------------------  125 (396)
T Consensus        81 ItvP~nA~~~Rni~~~~~~v~dHivhfY~L~~~D~~~~~~~l~~dp~~~~~~a~~~s~~~~~~~g~~~~vq~~~~~~v~~  160 (545)
T COG0374          81 ITVPVNALLIRNIMQAALFVHDHIVHFYQLHGLDWVDVVSALKADPYKASELAQSYSSWPKNSPGYFKEVQNRLKDFVES  160 (545)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf             88880179999999999999888888864215113436764125836666665413467556863034566666652243


Q ss_pred             --------------------------CHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHH----HHHHHHH
Q ss_conf             --------------------------4189999999999997899755976476336536200078989----9999999
Q gi|254780855|r  126 --------------------------LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE----LVEDIGC  175 (396)
Q Consensus       126 --------------------------~~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~~~~~----~~~~~~~  175 (396)
T Consensus       161 g~lg~f~~g~w~h~~y~l~p~~nli~~ahyl~~l~~qr~~~~~~a~fggk~Ph~~~~~vggv~~~~~~d~~~e~l~~~~~  240 (545)
T COG0374         161 GQLGIFANGYWGHPAYKLPPEVNLIVVAHYLEALEFQREIVKIVALFGGKNPHPQNLAVGGVTCPINLDSPMERLNEVKS  240 (545)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHH
T ss_conf             31223135556786556786678457632388999999999999864365766766656754125575318999999999


Q ss_pred             HHHHHHHHHHHHH--HHHHCCHHHHHH---------HCCEEEECC--CCCCCCCCCCCCCC---CCCCCCHHH-------
Q ss_conf             9999999999999--998448333442---------122112303--33310235665101---367601021-------
Q gi|254780855|r  176 WCDSFPSALNDIS--DLLTGNRIFKQR---------NVNIGTVKL--EDAWGWGFSGVMIR---GSGAAWDLR-------  232 (396)
Q Consensus       176 ~~~~~~~~~~~~~--~~~~~~~~~~~~---------~~~~g~~~~--~~~~~~~~~G~~~~---~~g~~~~~r-------  232 (396)
T Consensus       241 ~i~~~~~f~~~~~~~D~~~~a~~y~~~~~~g~g~~~~ls~g~~pd~~~~~~~l~p~g~~~~~~~~~~~~~d~~~I~E~vt  320 (545)
T COG0374         241 IIKKLADFINNVYLPDLEAIAAFYKEWVTIGGGLSNMLSYGEFPDDVDNGSLLDPGGVIINNNLSPSDELDISKIQEFVT  320 (545)
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             99988988887231209999998788776065621010324367866743042676310378766422045888877654


Q ss_pred             --------HCCCCCCCCCCCCCCEE--ECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCC--------------C
Q ss_conf             --------01754433467754001--01232012211000116875899999996210357867--------------2
Q gi|254780855|r  233 --------KSQPYECYSELDFDIPI--GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVG--------------P  288 (396)
Q Consensus       233 --------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--------------~  288 (396)
T Consensus       321 HsWY~~~~~lhP~dg~T~p~~~~~~~d~~~~YSWiKAPry~g~~~EVGPLAR~li~~~~~~~~~~~~~~~~~~~~~~~St  400 (545)
T COG0374         321 HSWYDDENGLHPWDGTTNPDYDGRSLDEKSKYSWIKAPRYDGKPVEVGPLARMLIAYAPGSTNLQEAKFTELPLEGIFST  400 (545)
T ss_pred             HEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf             10364578779877876888886544655674465467648844541718999986367863212320004665432027


Q ss_pred             CCCCCHHHCCH--HHHHHHHHHHHHHCCCCCC----CCCCC--CCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECC
Q ss_conf             01111230304--4899997567543057555----77761--5897489999889511799999879980889998358
Q gi|254780855|r  289 VSASDPKIVPP--KRADMKRSMESLIHHFKLY----TEGYH--VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP  360 (396)
Q Consensus       289 ~~~~~~~~~~~--~~~~~~~~~e~l~~~~~~~----~~~~~--~~~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~~ii~P  360 (396)
T Consensus       401 ~~R~~AR~~E~~~~~~~l~~~~~el~~n~~~~~~~t~~~~~~~t~e~kG~G~~EApRGaL~HWi~I~-~gkI~nYQ~VvP  479 (545)
T COG0374         401 LGRTAARVLEAKAAANILLKWLEELMENLKKGDATTFNPENPATWEGKGVGLTEAPRGALGHWVVIK-DGKIKNYQAVVP  479 (545)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEEEC-CCEEECCEEECC
T ss_conf             8899999999999999999999999845655443513667866544554110023654320018956-968606605655


Q ss_pred             CCCCHH---------HHHHHHCCCCCCH------HHHHHHHCCCCCCCC
Q ss_conf             756868---------8999970880575------999897609120553
Q gi|254780855|r  361 GYAHLQ---------AMEFLCKGHQLAD------VSAILGSLDIVFGEV  394 (396)
Q Consensus       361 T~~N~~---------~~e~al~G~~i~D------~~~iirSfDpC~sC~  394 (396)
T Consensus       480 STWN~sPRd~kG~~G~~E~aLiGtki~~~~~Pleilr~~rSFDPClaCa  528 (545)
T COG0374         480 STWNASPRDAKGQRGPYEQALIGTKIADPEQPLEILRTIHSFDPCLACA  528 (545)
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHEEECCCCCCHHCE
T ss_conf             5444678665789876778870788776656552310001367333203