HHsearch alignment for GI: 254780855 and conserved domain: COG0374
>COG0374 HyaB Ni,Fe-hydrogenase I large subunit [Energy production and conversion].
Probab=100.00 E-value=0 Score=550.28 Aligned_cols=382 Identities=17% Similarity=0.207 Sum_probs=271.8
Q ss_pred EEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98406868666775599999839989999988041157889874098987855443121234488899999999999838
Q gi|254780855|r 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLG 89 (396)
Q Consensus 10 ~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~a~g 89 (396)
T Consensus 3 rIvvDPvT-RIEGhlrievevd~~~ItdA~-ssgtlfRG~E~ILkgRDPrDA~~~tqRICGVCt~~Ha~Asv~AlE~Alg 80 (545)
T COG0374 3 RIVVDPVT-RIEGHLRIEVEVEDGVITDAW-SSGTLFRGFEIILKGRDPRDAWAITQRICGVCTTSHALASVRALEDALG 80 (545)
T ss_pred EEEECCCC-EEEEEEEEEEEECCCCEEEEE-ECCEEHHHHHHHHCCCCHHHHHHHHCHHCCCCCCHHHHHHHHHHHHHHC
T ss_conf 47845753-042047889997378533502-2211150699997389802556653400105751889999999998658
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------------------------------------
Q ss_conf 857888999999999999999889998743343056--------------------------------------------
Q gi|254780855|r 90 IEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA-------------------------------------------- 125 (396)
Q Consensus 90 i~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~-------------------------------------------- 125 (396)
T Consensus 81 ItvP~nA~~~Rni~~~~~~v~dHivhfY~L~~~D~~~~~~~l~~dp~~~~~~a~~~s~~~~~~~g~~~~vq~~~~~~v~~ 160 (545)
T COG0374 81 ITVPVNALLIRNIMQAALFVHDHIVHFYQLHGLDWVDVVSALKADPYKASELAQSYSSWPKNSPGYFKEVQNRLKDFVES 160 (545)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 88880179999999999999888888864215113436764125836666665413467556863034566666652243
Q ss_pred --------------------------CHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHH----HHHHHHH
Q ss_conf --------------------------4189999999999997899755976476336536200078989----9999999
Q gi|254780855|r 126 --------------------------LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE----LVEDIGC 175 (396)
Q Consensus 126 --------------------------~~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~~~~~----~~~~~~~ 175 (396)
T Consensus 161 g~lg~f~~g~w~h~~y~l~p~~nli~~ahyl~~l~~qr~~~~~~a~fggk~Ph~~~~~vggv~~~~~~d~~~e~l~~~~~ 240 (545)
T COG0374 161 GQLGIFANGYWGHPAYKLPPEVNLIVVAHYLEALEFQREIVKIVALFGGKNPHPQNLAVGGVTCPINLDSPMERLNEVKS 240 (545)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHH
T ss_conf 31223135556786556786678457632388999999999999864365766766656754125575318999999999
Q ss_pred HHHHHHHHHHHHH--HHHHCCHHHHHH---------HCCEEEECC--CCCCCCCCCCCCCC---CCCCCCHHH-------
Q ss_conf 9999999999999--998448333442---------122112303--33310235665101---367601021-------
Q gi|254780855|r 176 WCDSFPSALNDIS--DLLTGNRIFKQR---------NVNIGTVKL--EDAWGWGFSGVMIR---GSGAAWDLR------- 232 (396)
Q Consensus 176 ~~~~~~~~~~~~~--~~~~~~~~~~~~---------~~~~g~~~~--~~~~~~~~~G~~~~---~~g~~~~~r------- 232 (396)
T Consensus 241 ~i~~~~~f~~~~~~~D~~~~a~~y~~~~~~g~g~~~~ls~g~~pd~~~~~~~l~p~g~~~~~~~~~~~~~d~~~I~E~vt 320 (545)
T COG0374 241 IIKKLADFINNVYLPDLEAIAAFYKEWVTIGGGLSNMLSYGEFPDDVDNGSLLDPGGVIINNNLSPSDELDISKIQEFVT 320 (545)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 99988988887231209999998788776065621010324367866743042676310378766422045888877654
Q ss_pred --------HCCCCCCCCCCCCCCEE--ECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCC--------------C
Q ss_conf --------01754433467754001--01232012211000116875899999996210357867--------------2
Q gi|254780855|r 233 --------KSQPYECYSELDFDIPI--GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVG--------------P 288 (396)
Q Consensus 233 --------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--------------~ 288 (396)
T Consensus 321 HsWY~~~~~lhP~dg~T~p~~~~~~~d~~~~YSWiKAPry~g~~~EVGPLAR~li~~~~~~~~~~~~~~~~~~~~~~~St 400 (545)
T COG0374 321 HSWYDDENGLHPWDGTTNPDYDGRSLDEKSKYSWIKAPRYDGKPVEVGPLARMLIAYAPGSTNLQEAKFTELPLEGIFST 400 (545)
T ss_pred HEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 10364578779877876888886544655674465467648844541718999986367863212320004665432027
Q ss_pred CCCCCHHHCCH--HHHHHHHHHHHHHCCCCCC----CCCCC--CCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECC
Q ss_conf 01111230304--4899997567543057555----77761--5897489999889511799999879980889998358
Q gi|254780855|r 289 VSASDPKIVPP--KRADMKRSMESLIHHFKLY----TEGYH--VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360 (396)
Q Consensus 289 ~~~~~~~~~~~--~~~~~~~~~e~l~~~~~~~----~~~~~--~~~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~~ii~P 360 (396)
T Consensus 401 ~~R~~AR~~E~~~~~~~l~~~~~el~~n~~~~~~~t~~~~~~~t~e~kG~G~~EApRGaL~HWi~I~-~gkI~nYQ~VvP 479 (545)
T COG0374 401 LGRTAARVLEAKAAANILLKWLEELMENLKKGDATTFNPENPATWEGKGVGLTEAPRGALGHWVVIK-DGKIKNYQAVVP 479 (545)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEEEC-CCEEECCEEECC
T ss_conf 8899999999999999999999999845655443513667866544554110023654320018956-968606605655
Q ss_pred CCCCHH---------HHHHHHCCCCCCH------HHHHHHHCCCCCCCC
Q ss_conf 756868---------8999970880575------999897609120553
Q gi|254780855|r 361 GYAHLQ---------AMEFLCKGHQLAD------VSAILGSLDIVFGEV 394 (396)
Q Consensus 361 T~~N~~---------~~e~al~G~~i~D------~~~iirSfDpC~sC~ 394 (396)
T Consensus 480 STWN~sPRd~kG~~G~~E~aLiGtki~~~~~Pleilr~~rSFDPClaCa 528 (545)
T COG0374 480 STWNASPRDAKGQRGPYEQALIGTKIADPEQPLEILRTIHSFDPCLACA 528 (545)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHEEECCCCCCHHCE
T ss_conf 5444678665789876778870788776656552310001367333203