HHsearch alignment for GI: 254780855 and conserved domain: COG3261
>COG3261 HycE Ni,Fe-hydrogenase III large subunit [Energy production and conversion].
Probab=100.00 E-value=0 Score=545.80 Aligned_cols=365 Identities=34% Similarity=0.489 Sum_probs=346.4
Q ss_pred CCCCCCEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 74456159984068686667755999998399899999880411578898740989878554431212344888999999
Q gi|254780855|r 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYA 81 (396)
Q Consensus 2 ~~~~~~~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~ 81 (396)
T Consensus 2 ~~~~~g~~~ip~GP~H~gl~EP~~frl~v~GE~Iv~~di~~~y~hRGIEki~~g~~~~~a~~LaERVcGicS~aH~~~f~ 81 (382)
T COG3261 2 GKGGEGEFEIPVGPVHPGLIEPGHFRLFVDGEKIVDADIRLGYVHRGIEKIAEGLPYNKALFLAERVCGICSFAHAVAFV 81 (382)
T ss_pred CCCCCCEEEEECCCCCCCCCCCCEEEEEECCCEEEEEEEEEEEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77787448975278874556762599985794577777899875000578743798899999999873224778899999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCC
Q ss_conf 99999838857888999999999999999889998743343056418999999999999789975597647633653620
Q gi|254780855|r 82 LAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGV 161 (396)
Q Consensus 82 ~AiE~a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv 161 (396)
T Consensus 82 ~avE~~~~IEvPera~~iRai~~ELERihSHLl~l~~~~~~vg~~t~~~~~~~~RE~vm~~~e~iTG~R~~~G~n~iGGV 161 (382)
T COG3261 82 LAVEDALGIEVPERAQYIRAIILELERIHSHLLNLGLLCHDVGFETGFMQFFRLREKVMRLIELLTGNRVLYGLNVIGGV 161 (382)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEECCE
T ss_conf 99999737998818889999999999999999988655331364068889999999999999987376324055202444
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC
Q ss_conf 00789899999999999999999999999844833344212211230333310235665101367601021017544334
Q gi|254780855|r 162 HQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241 (396)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~G~~~~~~g~~~~~r~~~~~~~~~ 241 (396)
T Consensus 162 r~Di~~~~~~~~~~~i~~~~~e~~~~~e~~l~~p~i~~R~~~vGvi~~~~a~~~~~vGP~aRaSGi~~D~R~d~~~~~y~ 241 (382)
T COG3261 162 RRDILESDLEQILELIEDIREEVKEIVEVLLSDPNIEDRLQGVGVLDKEDARKLSAVGPTARASGIADDARIDHPPVYYD 241 (382)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHCCCCCHHHCCCCCCHHHCCCCCCCCC
T ss_conf 13551778999999999999999999999834838999742575558899876326683121367830333147776657
Q ss_pred CCCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 67754001012320122110001168758999999962103578672011112303044899997567543057555777
Q gi|254780855|r 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEG 321 (396)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~ 321 (396)
T Consensus 242 ~l~f~~i~~~eGDvfaR~~VR~~Ei~~S~~lI~~~ld~lp~~~-~~~~~-----------------------------~~ 291 (382)
T COG3261 242 ELPFEVIVRDEGDVFARFLVRIDEIFESLKLIEQALDNLPGGP-GGLLR-----------------------------EK 291 (382)
T ss_pred CCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCC-----------------------------CC
T ss_conf 7885202215752788889899999999999999998488988-76557-----------------------------42
Q ss_pred CCCC-CCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 6158-97489999889511799999879980889998358756868899997088057599989760912055359
Q gi|254780855|r 322 YHVP-VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396 (396)
Q Consensus 322 ~~~~-~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT~~N~~~~e~al~G~~i~D~~~iirSfDpC~sC~dr 396 (396)
T Consensus 292 ~~~~~~g~g~~~vEApRGel~h~v~l~~~g~i~r~~irtPS~~Nl~a~~~ml~g~~V~Da~l~~~S~dpc~sctdr 367 (382)
T COG3261 292 LELKGHGEGLGRVEAPRGELVHYVKLGDNGKIKRWKIRTPSYANLPALKYMLRGNTVADAPLIIASLDPCYSCTDR 367 (382)
T ss_pred EEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEECCEE
T ss_conf 0235876313565437774799999568985888897478636889999985788655433554136744001306