HHsearch alignment for GI: 254780855 and conserved domain: COG3261

>COG3261 HycE Ni,Fe-hydrogenase III large subunit [Energy production and conversion].
Probab=100.00  E-value=0  Score=545.80  Aligned_cols=365  Identities=34%  Similarity=0.489  Sum_probs=346.4

Q ss_pred             CCCCCCEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             74456159984068686667755999998399899999880411578898740989878554431212344888999999
Q gi|254780855|r    2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYA   81 (396)
Q Consensus         2 ~~~~~~~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~   81 (396)
T Consensus         2 ~~~~~g~~~ip~GP~H~gl~EP~~frl~v~GE~Iv~~di~~~y~hRGIEki~~g~~~~~a~~LaERVcGicS~aH~~~f~   81 (382)
T COG3261           2 GKGGEGEFEIPVGPVHPGLIEPGHFRLFVDGEKIVDADIRLGYVHRGIEKIAEGLPYNKALFLAERVCGICSFAHAVAFV   81 (382)
T ss_pred             CCCCCCEEEEECCCCCCCCCCCCEEEEEECCCEEEEEEEEEEEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             77787448975278874556762599985794577777899875000578743798899999999873224778899999


Q ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCC
Q ss_conf             99999838857888999999999999999889998743343056418999999999999789975597647633653620
Q gi|254780855|r   82 LAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGV  161 (396)
Q Consensus        82 ~AiE~a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv  161 (396)
T Consensus        82 ~avE~~~~IEvPera~~iRai~~ELERihSHLl~l~~~~~~vg~~t~~~~~~~~RE~vm~~~e~iTG~R~~~G~n~iGGV  161 (382)
T COG3261          82 LAVEDALGIEVPERAQYIRAIILELERIHSHLLNLGLLCHDVGFETGFMQFFRLREKVMRLIELLTGNRVLYGLNVIGGV  161 (382)
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEECCE
T ss_conf             99999737998818889999999999999999988655331364068889999999999999987376324055202444


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC
Q ss_conf             00789899999999999999999999999844833344212211230333310235665101367601021017544334
Q gi|254780855|r  162 HQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS  241 (396)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~G~~~~~~g~~~~~r~~~~~~~~~  241 (396)
T Consensus       162 r~Di~~~~~~~~~~~i~~~~~e~~~~~e~~l~~p~i~~R~~~vGvi~~~~a~~~~~vGP~aRaSGi~~D~R~d~~~~~y~  241 (382)
T COG3261         162 RRDILESDLEQILELIEDIREEVKEIVEVLLSDPNIEDRLQGVGVLDKEDARKLSAVGPTARASGIADDARIDHPPVYYD  241 (382)
T ss_pred             ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHCCCCCHHHCCCCCCHHHCCCCCCCCC
T ss_conf             13551778999999999999999999999834838999742575558899876326683121367830333147776657


Q ss_pred             CCCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             67754001012320122110001168758999999962103578672011112303044899997567543057555777
Q gi|254780855|r  242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEG  321 (396)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~  321 (396)
T Consensus       242 ~l~f~~i~~~eGDvfaR~~VR~~Ei~~S~~lI~~~ld~lp~~~-~~~~~-----------------------------~~  291 (382)
T COG3261         242 ELPFEVIVRDEGDVFARFLVRIDEIFESLKLIEQALDNLPGGP-GGLLR-----------------------------EK  291 (382)
T ss_pred             CCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCC-----------------------------CC
T ss_conf             7885202215752788889899999999999999998488988-76557-----------------------------42


Q ss_pred             CCCC-CCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf             6158-97489999889511799999879980889998358756868899997088057599989760912055359
Q gi|254780855|r  322 YHVP-VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR  396 (396)
Q Consensus       322 ~~~~-~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT~~N~~~~e~al~G~~i~D~~~iirSfDpC~sC~dr  396 (396)
T Consensus       292 ~~~~~~g~g~~~vEApRGel~h~v~l~~~g~i~r~~irtPS~~Nl~a~~~ml~g~~V~Da~l~~~S~dpc~sctdr  367 (382)
T COG3261         292 LELKGHGEGLGRVEAPRGELVHYVKLGDNGKIKRWKIRTPSYANLPALKYMLRGNTVADAPLIIASLDPCYSCTDR  367 (382)
T ss_pred             EEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEECCEE
T ss_conf             0235876313565437774799999568985888897478636889999985788655433554136744001306