HHsearch alignment for GI: 254780855 and conserved domain: PRK06075
>PRK06075 NADH dehydrogenase subunit D; Validated.
Probab=100.00 E-value=0 Score=585.74 Aligned_cols=391 Identities=70% Similarity=1.187 Sum_probs=374.2
Q ss_pred CCCCCEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44561599840686866677559999983998999998804115788987409898785544312123448889999999
Q gi|254780855|r 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYAL 82 (396)
Q Consensus 3 ~~~~~~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~ 82 (396)
T Consensus 2 ~~~~~~~~l~vGP~Hp~~~G~~r~~l~~~GE~I~~~e~~~Gy~HRGiEKl~E~r~~~q~~~l~eRi~~~~s~~~~~ay~~ 81 (392)
T PRK06075 2 EEIDRNYTLNFGPQHPAAHGVLRLILELDGEVVVRADPHIGYLHRGTEKLAEYRTYLQAIPYFDRLDYVSPMNNEHAYAL 81 (392)
T ss_pred CCCCCEEEEECCCCCCCCCCCCEEEEEECCCEEEEEEEECCCCHHHHHHHHCCCCHHHCCEEECCCCCCCCCHHHHHHHH
T ss_conf 87686489714898999987608999963988988676158000008998747987764622023445441167899999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCC
Q ss_conf 99998388578889999999999999998899987433430564189999999999997899755976476336536200
Q gi|254780855|r 83 AVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVH 162 (396)
Q Consensus 83 AiE~a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~ 162 (396)
T Consensus 82 AvE~l~gievp~RA~~iR~i~~ELeRI~sHL~~lg~~~~diG~~t~~~~~~~~RE~il~l~e~~tG~R~~~~~~~~GGv~ 161 (392)
T PRK06075 82 AVEKLLGIEVPERAQYIRVLFLELNRILSHLLWLGTHALDLGAMTPFLWGFREREKLLDLYEAVSGARMHHAYIRPGGVR 161 (392)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEE
T ss_conf 99999389988889989999999999999999999888750220788999999999999999971767454753468754
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCC
Q ss_conf 07898999999999999999999999998448333442122112303333102356651013676010210175443346
Q gi|254780855|r 163 QDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242 (396)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~G~~~~~~g~~~~~r~~~~~~~~~~ 242 (396)
T Consensus 162 ~Dl~~~~~~~~~~~l~~~~~~~~~~~~l~~~n~i~~~R~~gvGvls~e~A~~~g~~GP~~RASGv~~D~R~~~PY~~Y~~ 241 (392)
T PRK06075 162 RDLPDGLLEDIEDFLDYFPKRLDDYETLLTDNRIWKQRLVDIGVVSKEDALALGFTGPMLRGSGVAWDLRKSQPYEVYDE 241 (392)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCC
T ss_conf 57986899999999999999999999999609899998867073069999983986854123685023311577654343
Q ss_pred CCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 77540010123201221100011687589999999621035786720111123030448999975675430575557776
Q gi|254780855|r 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGY 322 (396)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~ 322 (396)
T Consensus 242 l~f~v~~~~~GD~~aR~~VR~~Ei~eSl~II~q~l~~l~---~~G~~~~~~~~~~~p~~~~~~~~~~~~i~~f~~~~~g~ 318 (392)
T PRK06075 242 LDFDVPVGKNGDCYDRYLVRVEEMRQSLRIIRQCLDKLP---PPGPVMVDDPKIAPPPREEMKTSMEALIHHFKLFTEGF 318 (392)
T ss_pred CCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCCCCCCCCHHHHHCCHHHHHHHCCCCCCCC
T ss_conf 675652056787899899999999999999999998478---99982036665579955654014576654131345665
Q ss_pred CCCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 15897489999889511799999879980889998358756868899997088057599989760912055359
Q gi|254780855|r 323 HVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396 (396)
Q Consensus 323 ~~~~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT~~N~~~~e~al~G~~i~D~~~iirSfDpC~sC~dr 396 (396)
T Consensus 319 ~~P~Ge~~~~vE~prGe~~~~v~sdg~~~p~R~kiR~PSf~n~~~l~~~~~G~~iaD~~~i~~S~d~~~~~~DR 392 (392)
T PRK06075 319 RVPAGEVYAAVESPKGEFGVYLVSDGGNKPYRVKIRAPSFAHLQALDEMLRGHMLADVVAIIGSLDIVFGEVDR 392 (392)
T ss_pred CCCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCC
T ss_conf 58995289998738842899999779995589999698845899999997799302698996174767678789