HHsearch alignment for GI: 254780855 and conserved domain: PRK10170
>PRK10170 hydrogenase 1 large subunit; Provisional.
Probab=100.00 E-value=0 Score=598.86 Aligned_cols=383 Identities=15% Similarity=0.130 Sum_probs=254.9
Q ss_pred CCEEEEEECCCCCCCCCCEEEEEEEEC-CEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 615998406868666775599999839-9899999880411578898740989878554431212344888999999999
Q gi|254780855|r 6 SRSFTINFGPQHPAAHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAV 84 (396)
Q Consensus 6 ~~~~~~~~gp~~~~~~g~l~~~~~v~~-~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~Ai 84 (396)
T Consensus 16 gkr--ivIdPvT-RIEGhL~i~v~vdd~gvV~dA~~-~~t~fRGFE~iL~GRdP~DA~~it~RICGIC~~sH~~As~~Al 91 (597)
T PRK10170 16 GRR--LVVDPIT-RIEGHMRCEVNINDQNVITNAVS-CGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAI 91 (597)
T ss_pred CCE--EEECCCC-CCCCCEEEEEEEECCCEEEEEEE-CCCCCCCHHHHHCCCCHHHHHHHHCCCCEECCHHHHHHHHHHH
T ss_conf 886--9978976-42365589999927985999998-4553012749857998668778766636318578999999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------------------------------------
Q ss_conf 998388578889999999999999998899987433430564--------------------------------------
Q gi|254780855|r 85 EKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL-------------------------------------- 126 (396)
Q Consensus 85 E~a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~-------------------------------------- 126 (396)
T Consensus 92 e~a~Gi~~P~na~llRnL~~~a~~l~dH~~Hfy~L~~pD~v~~~~al~adp~~~~~~a~~~~~~~~~~~~~~~~i~~rl~ 171 (597)
T PRK10170 92 EDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLK 171 (597)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 99709988862999999999999998899999872361343010111047277899987503454456277899999999
Q ss_pred --------------------------------HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHH
Q ss_conf --------------------------------189999999999997899755976476336536200078989999999
Q gi|254780855|r 127 --------------------------------TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIG 174 (396)
Q Consensus 127 --------------------------------~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~~~~~~~~~~~ 174 (396)
T Consensus 172 ~~~~~g~~~~~~~g~~~~~~y~l~~e~~l~~~~~yl~al~~~r~~~~i~ai~GGk~pHps~i-VGGv~~~i~~~~~~~~~ 250 (597)
T PRK10170 172 KFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWI-VGGMPCAINIDESGAVG 250 (597)
T ss_pred HHHHCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCCCCCCHHHHHH
T ss_conf 87522432222477788802107814556788889999999999999999871778786642-27614666732233320
Q ss_pred ----HHHHHHHHHHHHHHHHHHCC--------HHHHHHHCCEE------------EECCCC-----CCCCCCCCCCCCCC
Q ss_conf ----99999999999999998448--------33344212211------------230333-----31023566510136
Q gi|254780855|r 175 ----CWCDSFPSALNDISDLLTGN--------RIFKQRNVNIG------------TVKLED-----AWGWGFSGVMIRGS 225 (396)
Q Consensus 175 ----~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~g------------~~~~~~-----~~~~~~~G~~~~~~ 225 (396)
T Consensus 251 ~~~~e~l~~~~~~~~~~~df~~~~~~~d~l~i~~~~~~~~~~G~G~~~~~~lsyg~fp~~~~~~g~~~~~~p~G~~~~g~ 330 (597)
T PRK10170 251 AVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLLMPGGAVINGD 330 (597)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCC
T ss_conf 20299999999999999999997341229999875111887188867765002256645567656433234785786685
Q ss_pred CCC---C---HH---HHCCCCCCC---------------CCCCC------------CCEEECCCCCHHHHHCCCHHHHHH
Q ss_conf 760---1---02---101754433---------------46775------------400101232012211000116875
Q gi|254780855|r 226 GAA---W---DL---RKSQPYECY---------------SELDF------------DIPIGKHGDCYDRYLVRMMEMRES 269 (396)
Q Consensus 226 g~~---~---~~---r~~~~~~~~---------------~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~s 269 (396)
T Consensus 331 ~~~~~~~d~~D~~~I~E~v~~swy~~~~~~~g~hP~~g~T~P~y~p~~~~g~~~~~~~~~~~~kYSW~KaPRY~g~~~Ev 410 (597)
T PRK10170 331 FNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEV 410 (597)
T ss_pred CCCCCCCCCCCHHHEEEECCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC
T ss_conf 44446556568445188345432017787566787665126777776556777762224666651157433237976231
Q ss_pred HHHHHHHHHHHCCCCC-------------------CCCCCCCCHHHCCH--HHHHHHHHHHHHHCCCCC----------C
Q ss_conf 8999999962103578-------------------67201111230304--489999756754305755----------5
Q gi|254780855|r 270 VKIIRQCVNRLLGKNK-------------------VGPVSASDPKIVPP--KRADMKRSMESLIHHFKL----------Y 318 (396)
Q Consensus 270 ~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~--~~~~~~~~~e~l~~~~~~----------~ 318 (396)
T Consensus 411 GPLAR~~v~~~~g~~~~~~~~d~~~~~~~l~~~~~~s~l~R~~AR~~E~~~~~~~~~~~l~~l~~~l~~g~~~~~~~~~~ 490 (597)
T PRK10170 411 GPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKW 490 (597)
T ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 67888887524687478888999987507871000016999999999999999999999999998654577444554556
Q ss_pred CCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHH---------HHHHHHCCCCCCH------HHHH
Q ss_conf 777615897489999889511799999879980889998358756868---------8999970880575------9998
Q gi|254780855|r 319 TEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLAD------VSAI 383 (396)
Q Consensus 319 ~~~~~~~~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT~~N~~---------~~e~al~G~~i~D------~~~i 383 (396)
T Consensus 491 ~p~~~P~~~~GvG~~EApRGaL~Hw~~I-~dGkI~nYQiivPTTWN~sPrD~~g~~Gp~E~aLigt~i~~~~~Pvei~r~ 569 (597)
T PRK10170 491 EPATWPTECRGVGFTEAPRGALGHWAAI-RDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRT 569 (597)
T ss_pred CCCCCCCCCEEEEEEECCCCCCEEEEEE-ECCEEECCEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHCEE
T ss_conf 8888987746999988787773468998-799990517889888868886989696889998479977899987411244
Q ss_pred HHHCCCCCCCC
Q ss_conf 97609120553
Q gi|254780855|r 384 LGSLDIVFGEV 394 (396)
Q Consensus 384 irSfDpC~sC~ 394 (396)
T Consensus 570 vrSfDPClaCa 580 (597)
T PRK10170 570 LHSFDPCLACS 580 (597)
T ss_pred EECCCCCCCCC
T ss_conf 34388630453