HHsearch alignment for GI: 254780855 and conserved domain: TIGR01962
>TIGR01962 NuoD NADH dehydrogenase I, D subunit; InterPro: IPR010219 This entry recognises specifically the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a subunit C/D fusion.; GO: 0016651 oxidoreductase activity acting on NADH or NADPH, 0006118 electron transport.
Probab=100.00 E-value=0 Score=553.00 Aligned_cols=387 Identities=61% Similarity=1.081 Sum_probs=375.2
Q ss_pred CEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 15998406868666775599999839989999988041157889874098987855443121234488899999999999
Q gi|254780855|r 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEK 86 (396)
Q Consensus 7 ~~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~ 86 (396)
T Consensus 1 ~~~~lNlGPQHPStHGvLRLiLelDGE~v~~a~P~IGYLHRG~EK~~E~~tY~q~~Py~DRlDYls~~~ne~AY~LAVEK 80 (408)
T TIGR01962 1 EEMILNLGPQHPSTHGVLRLILELDGEQVVRADPHIGYLHRGTEKLAENRTYTQAIPYTDRLDYLSPFSNELAYALAVEK 80 (408)
T ss_pred CEEEEECCCCCCHHHCCCEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHH
T ss_conf 91578458888221111014466058589885267776212578876433333116734325551510100488888787
Q ss_pred HHC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCC
Q ss_conf 838--857888999999999999999889998743343056418999999999999789975597647633653620007
Q gi|254780855|r 87 LLG--IEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQD 164 (396)
Q Consensus 87 a~g--i~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~ 164 (396)
T Consensus 81 LlGit~evP~RA~vIRV~l~EL~RI~sHLl~igt~~lD~GAmTp~lyaFr~RE~~~DL~E~~~G~RM~~~y~R~GGV~~D 160 (408)
T TIGR01962 81 LLGITIEVPRRAQVIRVILLELNRISSHLLFIGTHALDLGAMTPFLYAFREREKILDLFEAITGARMHSAYFRIGGVAED 160 (408)
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
T ss_conf 70761246731589999999988998899999998777877769999888799999999876300246676345871321
Q ss_pred CC---HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC
Q ss_conf 89---899999999999999999999999844833344212211230333310235665101367601021017544334
Q gi|254780855|r 165 IP---PELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241 (396)
Q Consensus 165 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~G~~~~~~g~~~~~r~~~~~~~~~ 241 (396)
T Consensus 161 LPdf~~n~l~~i~~Fl~~~p~~l~~~e~Ll~~NrIwk~R~~gVGvv~~~~A~~~G~tG~~LRgsGi~~D~RK~~PY~~Y~ 240 (408)
T TIGR01962 161 LPDFMENWLEEIREFLEQFPKRLKDYETLLNENRIWKQRTQGVGVVSAKDALDWGLTGPMLRGSGIDWDIRKEEPYEGYD 240 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCEECHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCHHH
T ss_conf 03454338999999998614559999999872616775215763007699984489864521236420256677632020
Q ss_pred CCCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCHH----------------HHHHH
Q ss_conf 67754001012320122110001168758999999962103578672011112303044----------------89999
Q gi|254780855|r 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK----------------RADMK 305 (396)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~ 305 (396)
T Consensus 241 ~~DFdVp~~~~GDcY~Ry~~r~~E~~ES~kIieQC~~~~~~---~GP~~~~~p~~~~P~Dlq~GPdGlGnsPkhik~~~~ 317 (408)
T TIGR01962 241 ELDFDVPVGENGDCYDRYLLRVLEMRESIKIIEQCLEKLRT---PGPIKADNPKLAPPPDLQVGPDGLGNSPKHIKEEMK 317 (408)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 26565431888862045566788899899999998873588---588031788630671002577656777489999986
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 75675430575557776158974899998895117999998799808899983587568688999970880575999897
Q gi|254780855|r 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILG 385 (396)
Q Consensus 306 ~~~e~l~~~~~~~~~~~~~~~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT~~N~~~~e~al~G~~i~D~~~iir 385 (396)
T Consensus 318 ~~mEaLI~HF~L~t~G~~vP~GEvY~~~EsPKGElG~yi~SDG~~~PYR~k~RaPSF~hLQ~l~~~~~G~~lAD~ia~~g 397 (408)
T TIGR01962 318 TSMEALIHHFKLVTEGFRVPAGEVYVAIESPKGELGFYIISDGGTKPYRLKIRAPSFAHLQALEAMLVGHYLADLIAILG 397 (408)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf 44678888887753377288986000045248730378884188985367763864366888999860206888899876
Q ss_pred HCCCCCCCCCC
Q ss_conf 60912055359
Q gi|254780855|r 386 SLDIVFGEVDR 396 (396)
Q Consensus 386 SfDpC~sC~dr 396 (396)
T Consensus 398 s~D~V~GeVDR 408 (408)
T TIGR01962 398 SIDIVMGEVDR 408 (408)
T ss_pred HCCCCCCCCCC
T ss_conf 05733346689