HHsearch alignment for GI: 254780855 and conserved domain: pfam00374
>pfam00374 NiFeSe_Hases Nickel-dependent hydrogenase.
Probab=100.00 E-value=0 Score=539.03 Aligned_cols=347 Identities=17% Similarity=0.134 Sum_probs=238.8
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 78898740989878554431212344888999999999998388578889999999999999998899987433430564
Q gi|254780855|r 47 RGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126 (396)
Q Consensus 47 RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~ 126 (396)
T Consensus 1 RGFE~~L~GR~~~dap~it~RICGIC~~aH~~Aa~~Ale~a~Gv~~p~~a~~lR~L~~~~e~iqsH~lhfy~L~~PDf~~ 80 (504)
T pfam00374 1 RGLEVILKGRDPRDAWAFVQRICGVCTGTHALASVRAVEDALGIKIPKNARLIRNLMLAALYLHDHIVHFYHLHALDWVD 80 (504)
T ss_pred CCCCHHHCCCCHHHHHHHHCCCCEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 97205517998768889866734309078999999999987099779789999999999999989999999850640055
Q ss_pred ---------------------------------------------------------------------HHHHHHHHHHH
Q ss_conf ---------------------------------------------------------------------18999999999
Q gi|254780855|r 127 ---------------------------------------------------------------------TPPLWGFEERE 137 (396)
Q Consensus 127 ---------------------------------------------------------------------~~~~~~~~~r~ 137 (396)
T Consensus 81 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~al~~~~ 160 (504)
T pfam00374 81 VTSALKADPKKASELAQSVSPWPKSSGYFKAVQNRLKKFVESGQLGIFTNAYWGHPAYKLPPEANLIAVAHYLEALDVQR 160 (504)
T ss_pred CHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 02222248366777754315554431689999999998763143122466556673123783330467787999999999
Q ss_pred HHHHHHHHHCCCCCCCCEEEECCCCCCCCH-----HHHHHHHHHHHHHHHHHHHHH--HHHHCCHHHHHHHCCEE-----
Q ss_conf 999789975597647633653620007898-----999999999999999999999--99844833344212211-----
Q gi|254780855|r 138 KLMVFYERASGSRMHAAYFRPGGVHQDIPP-----ELVEDIGCWCDSFPSALNDIS--DLLTGNRIFKQRNVNIG----- 205 (396)
Q Consensus 138 ~~~~~~~~~gG~~~Hp~~~vpGGv~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g----- 205 (396)
T Consensus 161 ~~~ei~~i~gGr~~Hp~~~vpGGvt~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~ 240 (504)
T pfam00374 161 DAVKIHAIFGGKNPHPQNTVVGGVTCAINLDGLGAERLAEVKALIKEVAEFVENVYLPDVLAIGGFYKDWLYGGGLSGKN 240 (504)
T ss_pred HHHHHHHHHCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99999999738788868746687767888784689999999999999999999876266999999877776505777776
Q ss_pred -----EECCC---CCCCCCCCCCCCCCCC---CCCHH---HHCCCCCCCCCC--------------CCCC-EEECCCCCH
Q ss_conf -----23033---3310235665101367---60102---101754433467--------------7540-010123201
Q gi|254780855|r 206 -----TVKLE---DAWGWGFSGVMIRGSG---AAWDL---RKSQPYECYSEL--------------DFDI-PIGKHGDCY 256 (396)
Q Consensus 206 -----~~~~~---~~~~~~~~G~~~~~~g---~~~~~---r~~~~~~~~~~~--------------~~~~-~~~~~~~~~ 256 (396)
T Consensus 241 ~l~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~~i~E~~~~s~y~~~~~~~~hp~~~~t~p~~~~~~~~~~~YSw 320 (504)
T pfam00374 241 VLSYGEFPKDDYDKKSFLLPGGVIINGDLTEVHPVDEDLIEEFVKHSWYDYGDEKGLHPWDGVTDPKYTLGPDEDGKYSW 320 (504)
T ss_pred EEEECCCCCCCCCCCCCCCCCCEEECCCCCEECCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 35536755565664300137853765864300245311002115630001466545676456677664556555677430
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHCCC----------------C---CCCCCCCCCHHHCC--HHHHHHHHHHHHHHCCC
Q ss_conf 221100011687589999999621035----------------7---86720111123030--44899997567543057
Q gi|254780855|r 257 DRYLVRMMEMRESVKIIRQCVNRLLGK----------------N---KVGPVSASDPKIVP--PKRADMKRSMESLIHHF 315 (396)
Q Consensus 257 ~~~~~~~~~~~~s~~~~~~~~~~~~~~----------------~---~~~~~~~~~~~~~~--~~~~~~~~~~e~l~~~~ 315 (396)
T Consensus 321 ~Kapry~g~~~evGPLARl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~r~~AR~iE~~~~~e~~~~~l~~l~~~~ 400 (504)
T pfam00374 321 IKAPRYKGKAMEVGPLARMLVAYAKGRERVKEQVDRVLKKLNLPLSALFSTLGRTAARALECKLAADYMQVALDKLVTNI 400 (504)
T ss_pred EECCCCCCCCEEECHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 02532689633425999999734149957899999999982788510036899999999999999999999999998625
Q ss_pred CCCC---------CCCCCCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHH---------HHHHHHCCCCC
Q ss_conf 5557---------77615897489999889511799999879980889998358756868---------89999708805
Q gi|254780855|r 316 KLYT---------EGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQL 377 (396)
Q Consensus 316 ~~~~---------~~~~~~~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT~~N~~---------~~e~al~G~~i 377 (396)
T Consensus 401 ~~~~~~~~~~~~~~~~~p~~g~GvG~~EAPRG~L~H~~~i-e~G~I~~y~iIvPTtwN~sprd~~~~~g~~E~aligt~i 479 (504)
T pfam00374 401 KAGDSSTNVEKWEPSTWPKEAKGVGFTEAPRGALSHWIRI-KDGKIENYQAVVPTTWNAGPRDAKGNIGPYEASLIGTPM 479 (504)
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEE-CCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCC
T ss_conf 4677655456657778987617999987787660458998-398697877989887772323668894899998469977
Q ss_pred CH------HHHHHHHCCCCCCCC
Q ss_conf 75------999897609120553
Q gi|254780855|r 378 AD------VSAILGSLDIVFGEV 394 (396)
Q Consensus 378 ~D------~~~iirSfDpC~sC~ 394 (396)
T Consensus 480 ~~~~~~~e~~~~iRsfDPClsCa 502 (504)
T pfam00374 480 ADPEQPVEILRTVHSFDPCLACA 502 (504)
T ss_pred CCCCCHHHHHHHHCCCCCCCCHH
T ss_conf 89885375541321588740000