HHsearch alignment of GI: 254780855 and MMDB domain: 1wui_L_47-490
>1wui_L (L:47-490) Periplasmic [NIFE] hydrogenase large subunit; high resolution [NIFE]hydrogenase, oxidoreductase, NI-A state, unready state; HET: NFC; 1.04A {Desulfovibrio vulgaris str}
Probab=100.00 E-value=0 Score=360.70 Aligned_cols=288 Identities=11% Similarity=-0.014 Sum_probs=219.7
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH----
Q ss_conf 4098987855443121234488899999999999838857888999999999999999889998743343056418----
Q gi|254780855|r 53 IETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP---- 128 (396)
Q Consensus 53 l~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~~~---- 128 (396)
|+||+|+|++.+|+|||||||++|++|+++|+|+|+||+||++|+++|+|++++|+|+||++|+|.++.+++....
T Consensus 1 l~gr~~~~~~~~~~Ricgic~~~h~~a~~~a~e~~~gi~~p~~a~~~R~i~~~~eri~~hl~~~~~~~~~~~~~~~~~~~ 80 (444)
T 1wui_L 1 LKGRDPRDAQHFTQRTCGVXTYTHALASTRCVDNAVGVHIPKNATYIRNLVLGAQYLHDHIVHFYHLHALDFVDVTAALK 80 (444)
T ss_dssp HTTSCGGGHHHHHHTTCSSSTTHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTCCTGGGGG
T ss_pred HCCCCHHHHHHHHHHHHEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCC
T ss_conf 67999789776742000417878999999999998299889889999999999999998998998762223136632443
Q ss_pred -------------------------------------------------------------------HHHHHHHHHHHHH
Q ss_conf -------------------------------------------------------------------9999999999997
Q gi|254780855|r 129 -------------------------------------------------------------------PLWGFEEREKLMV 141 (396)
Q Consensus 129 -------------------------------------------------------------------~~~~~~~r~~~~~ 141 (396)
+.......+...+
T Consensus 81 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (444)
T 1wui_L 81 ADPAKAAKVASSISPRKTTAADLKAVQDKLKTFVETGQLGPFTNAYFLGGHPAYYLDPETNLIATAHYLEALRLQVKAAR 160 (444)
T ss_dssp CCHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHTTCCGGGTTCTTTTCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 57467999864127522346779999899999886400477665434578751347710003567789999999999999
Q ss_pred HHHHHCCCCCCCCEEEECCCCCCCCHHHHHH--HHHHHHHHHHHHHH--------HHHHHHC------------------
Q ss_conf 8997559764763365362000789899999--99999999999999--------9999844------------------
Q gi|254780855|r 142 FYERASGSRMHAAYFRPGGVHQDIPPELVED--IGCWCDSFPSALND--------ISDLLTG------------------ 193 (396)
Q Consensus 142 ~~~~~gG~~~Hp~~~vpGGv~~~~~~~~~~~--~~~~~~~~~~~~~~--------~~~~~~~------------------ 193 (396)
.++.++|+.+|+...+++|.+......+... .....+....+..+ ....+.+
T Consensus 161 ~i~~l~~~~~~~~~~~~~~~~~~g~~~d~r~~~~~~~~~e~~~~~~~~~~r~~~r~~e~~~s~~~~~~~~~~~~~~~~~~ 240 (444)
T 1wui_L 161 AMAVFGAKNPHTQFTVVGGVTCYDALTPQRIAEFEALWKETKAFVDEVYIPDLLVVAAAYKDWTQYGGTDNFITFGEFPK 240 (444)
T ss_dssp HHHHHHSCSSSCCCEETTEECCGGGGSHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTGGGGGSCCCSCEEEEEEEES
T ss_pred HHHHHCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHCCC
T ss_conf 99997288745550002654246788889999999999999999999999899999875401665178654220200356
Q ss_pred --------------------------------------------------------CHHHHHHHCCEEEECCCCCCCCCC
Q ss_conf --------------------------------------------------------833344212211230333310235
Q gi|254780855|r 194 --------------------------------------------------------NRIFKQRNVNIGTVKLEDAWGWGF 217 (396)
Q Consensus 194 --------------------------------------------------------~~~~~~~~~~~g~~~~~~~~~~~~ 217 (396)
......+....+.........++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~a~~~~~ 320 (444)
T 1wui_L 241 DEYDLNSRFFKPGVVFKRDFKNIKPFDKMQIEEHVRHSWYEGAEARHPWKGQTQPKYTDLHGDDRYSWMKAPRYMGEPME 320 (444)
T ss_dssp STTCGGGEEEEEEEESTTCTTSCBCCCGGGEEEECTTBTBSSSCCBCGGGCCCCBCCCCTTBTTBCBSSCEEEETTBCCB
T ss_pred CCCCCHHCEECCCEEECCCCCEECCCCHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCEE
T ss_conf 55530111003654885875410455726643045166515864247666666665222466565300125312896536
Q ss_pred CCCCCCCCCC-CCHHHHCCCCCCCCCCCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 6651013676-010210175443346775400101232012211000116875899999996210357867201111230
Q gi|254780855|r 218 SGVMIRGSGA-AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKI 296 (396)
Q Consensus 218 ~G~~~~~~g~-~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (396)
+||.+|.+|. .++.|+..||..|...++...+...++++++..+|..+..+|..+.++++++.+....
T Consensus 321 ~Gp~AR~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~gd~~~R~~~R~~E~~~s~~~i~~~l~~~~~~~~----------- 389 (444)
T 1wui_L 321 TGPLAQVLIAYSQGHPKVKAVTDAVLAKLGVGPEALFSTLGRTAARGIETAVIAEYVGVMLQEYKDNIA----------- 389 (444)
T ss_dssp CSHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred ECHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------
T ss_conf 223788766543067448999999998649987665888999999999999999999999996352144-----------
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHH
Q ss_conf 30448999975675430575557776158974899998895117999998799808899983587568688
Q gi|254780855|r 297 VPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367 (396)
Q Consensus 297 ~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT~~N~~~ 367 (396)
........+...+++|+|+|++|||||+|+||+++| ||||++|||++||+||++|
T Consensus 390 ---------------~~~~~~~~~~~~~~~g~g~g~~EapRG~l~h~~~~~-~gki~~~~i~~Pt~~N~~p 444 (444)
T 1wui_L 390 ---------------KGDNVICAPWEMPKQAEGVGFVNAPRGGLSHWIRIE-DGKIGNFQLVVPSTWTLGP 444 (444)
T ss_dssp ---------------TTCCCCBCCCCCCSSEEEEEEEEETTEEEEEEEEEE-TTEEEEEEEECHHHHHHCC
T ss_pred ---------------CCCCCCCCCCCCCCCEEEEEEEECCCEEEEEEEEEE-CCEEEEEEEECCCCCCCCC
T ss_conf ---------------578642377779986189999988875179999981-9989798898987021564