HHsearch alignment of GI: 254780855 and MMDB domain: 1yq9_H_56-492
>1yq9_H (H:56-492) Periplasmic [NIFE] hydrogenase large subunit; oxidoreductase; 2.35A {Desulfovibrio gigas}
Probab=100.00 E-value=1.4e-42 Score=315.48 Aligned_cols=307 Identities=14% Similarity=0.094 Sum_probs=188.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH----------
Q ss_conf 8554431212344888999999999998388578889999999999999998899987433430564189----------
Q gi|254780855|r 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP---------- 129 (396)
Q Consensus 60 da~~it~RICGIC~~aH~~Aa~~AiE~a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~~~~---------- 129 (396)
||+.||+|||||||++|++|+++|+|+++||+||++++++|+|++++++|+||++|+|.++.+++....+
T Consensus 1 da~~~~~Ricgic~~~h~~a~~~Aie~~~Gi~vp~~a~~lR~i~~~~~~i~~H~~~~~~~~~~~~~~~~~~~~~~~~e~~ 80 (437)
T 1yq9_H 1 DAQHFTQRACGVCTYVHALASVRAVDNCVGVKIPENATLMRNLTMGAQYMHDHLVHFYHLHALDWVNVANALNADPAKAA 80 (437)
T ss_dssp GHHHHHHTTCSSSTTHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTCCSGGGGGCCHHHHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCHHHHH
T ss_conf 97877440004178689999999999981998898899999999999999988999988624032055344546868898
Q ss_pred -------------------------------------------------------------HHHHHHHHHHHHHHHHHCC
Q ss_conf -------------------------------------------------------------9999999999978997559
Q gi|254780855|r 130 -------------------------------------------------------------LWGFEEREKLMVFYERASG 148 (396)
Q Consensus 130 -------------------------------------------------------------~~~~~~r~~~~~~~~~~gG 148 (396)
......+..........++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~r~~~~~ 160 (437)
T 1yq9_H 81 RLANDLSPRKTTTESLKAVQAKVKALVESGQLGIFTNAYFLGGHPAYVLPAEVDLIATAHYLEALRVQVKAARAMAIFGA 160 (437)
T ss_dssp HHHHHHCSSCCCHHHHHHHHHHHHHHHHTTCCGGGTTCTTTTCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 77532175335568999999999988864011311354435788621266111023468899999999999999999828
Q ss_pred CCCCCCEEEECCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHCCEEEEC---C-------CCCCCC
Q ss_conf 7647633653620007--8989999999999999999999999984483-3344212211230---3-------333102
Q gi|254780855|r 149 SRMHAAYFRPGGVHQD--IPPELVEDIGCWCDSFPSALNDISDLLTGNR-IFKQRNVNIGTVK---L-------EDAWGW 215 (396)
Q Consensus 149 ~~~Hp~~~vpGGv~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~---~-------~~~~~~ 215 (396)
+.+|+...++|+.... ...+....+...+.+...+............ .....+...+... . ......
T Consensus 161 ~~~h~~a~~~a~e~~~~~~~~~~~~~~r~~~~e~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 240 (437)
T 1yq9_H 161 KNPHTQFTVVGGCTNYDSLRPERIAEFRKLYKEVREFIEQVYITDLLAVAGFYKNWAGIGKTSNFLTCGEFPTDEYDLNS 240 (437)
T ss_dssp SSSSCCCEETTEECCGGGGSHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTGGGGGSSCCCCEEECCBCCSSTTCGGG
T ss_pred CCCCCCEEEECEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHH
T ss_conf 88656806768583325544789999999999999999998876899989888767663365420002654445554133
Q ss_pred CCCCCCCCCCCCCCHH--------HHCCCCCC------------CCCCCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHH
Q ss_conf 3566510136760102--------10175443------------346775400101232012211000116875899999
Q gi|254780855|r 216 GFSGVMIRGSGAAWDL--------RKSQPYEC------------YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQ 275 (396)
Q Consensus 216 ~~~G~~~~~~g~~~~~--------r~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 275 (396)
..........|...+. .+...+.. ....+.........+++...+.......++++++|.
T Consensus 241 ~~~~~~~~~gG~~~~~~~~~~~~i~e~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GplaR~ 320 (437)
T 1yq9_H 241 RYTPQGVIWGNDLSKVDDFNPDLIEEHVKYSWYEGADAHHPYKGVTKPKWTEFHGEDRYSWMKAPRYKGEAFEVGPLASV 320 (437)
T ss_dssp SSBCCEEECTTCTTCCBCCCGGGEEEECTTTTBSSSCCBCGGGCCCCBCCCCTTGGGCCCSSCEEEETTBCCBCSHHHHH
T ss_pred HCCCCCEEECCCCCCCCCCCHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHH
T ss_conf 03676448888534245558678520356122057644587556777776534444664133213436775101448888
Q ss_pred HHHHHCC-------------------CCCCCCCCCCCHHHCC--HHHHHHHHHHHHHHCCC-----CCCCCCCCCCCCCE
Q ss_conf 9962103-------------------5786720111123030--44899997567543057-----55577761589748
Q gi|254780855|r 276 CVNRLLG-------------------KNKVGPVSASDPKIVP--PKRADMKRSMESLIHHF-----KLYTEGYHVPVGEV 329 (396)
Q Consensus 276 ~~~~~~~-------------------~~~~~~~~~~~~~~~~--~~~~~~~~~~e~l~~~~-----~~~~~~~~~~~G~G 329 (396)
....... ........+..+++.. .+...++++++.+.... +.......+++|+|
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~aR~~E~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~g 400 (437)
T 1yq9_H 321 LVAYAKKHEPTVKAVDLVLKTLGVGPEALFSTLGRTAARGIQCLTAAQEVEVWLDKLEANVKAGKDDLYTDWQYPTESQG 400 (437)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCCGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCBCCCCCCSEEEE
T ss_pred HHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEE
T ss_conf 74213357037899999998639987667875888999999999999999999972043165677765577889997189
Q ss_pred EEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHH
Q ss_conf 99998895117999998799808899983587568688
Q gi|254780855|r 330 YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367 (396)
Q Consensus 330 vG~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT~~N~~~ 367 (396)
+|++|||||+|+||++++ ||+|++||||+||+||++|
T Consensus 401 ~g~~EApRG~l~h~~~~~-~g~i~~~~ii~Pt~~N~~P 437 (437)
T 1yq9_H 401 VGFVNAPRGMLSHWIVQR-GGKIENFQLVVPSTWNLGP 437 (437)
T ss_dssp EEEEEETTEEEEEEEEEE-TTEEEEEEEECHHHHHHCC
T ss_pred EEEEECCCCCEEEEEEEC-CCEEEEEEEECCCCCCCCC
T ss_conf 999988771168999977-9989888898987221364