HHsearch alignment of GI: 254780855 and MMDB domain: 1yq9_H_56-492

>1yq9_H (H:56-492) Periplasmic [NIFE] hydrogenase large subunit; oxidoreductase; 2.35A {Desulfovibrio gigas}
Probab=99.54  E-value=1.1e-20  Score=162.93  Aligned_cols=276  Identities=9%  Similarity=-0.179  Sum_probs=232.0

Q ss_pred             EEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             59984068686667755999998399899999880411578898740989878554431212344888999999999998
Q gi|254780855|r    8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKL   87 (396)
Q Consensus         8 ~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~a   87 (396)
                      .+.+..+|+|+...+++++.+.+.++.+.++...+++.+||+|++++++.+.+++.+.+|+||+|+.+|.+|++.|+|.+
T Consensus        96 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~r~~~~~~~~h~~a~~~a~e~~  175 (437)
T 1yq9_H           96 LKAVQAKVKALVESGQLGIFTNAYFLGGHPAYVLPAEVDLIATAHYLEALRVQVKAARAMAIFGAKNPHTQFTVVGGCTN  175 (437)
T ss_dssp             HHHHHHHHHHHHHTTCCGGGTTCTTTTCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSSCCCEETTEECC
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECEEEE
T ss_conf             99999999988864011311354435788621266111023468899999999999999999828886568067685833


Q ss_pred             HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCC
Q ss_conf             38857888999999999999999889998743343056---418999999999999789975597647633653620007
Q gi|254780855|r   88 LGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA---LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQD  164 (396)
Q Consensus        88 ~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~---~~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~  164 (396)
                      .++++|++++.+|.++.+++++++|+++++.+....+.   .........+++....+++.++|+++|+...++||+.+.
T Consensus       176 ~~~~~~~~~~~~r~~~~e~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~gG~~~~  255 (437)
T 1yq9_H          176 YDSLRPERIAEFRKLYKEVREFIEQVYITDLLAVAGFYKNWAGIGKTSNFLTCGEFPTDEYDLNSRYTPQGVIWGNDLSK  255 (437)
T ss_dssp             GGGGSHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTGGGGGSSCCCCEEECCBCCSSTTCGGGSSBCCEEECTTCTTC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHCCCCCEEECCCCCC
T ss_conf             25544789999999999999999998876899989888767663365420002654445554133036764488885342


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHH-----HHHHHHCCHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCC
Q ss_conf             8989999999999999999999-----99998448333442122112303333102356651013676010210175443
Q gi|254780855|r  165 IPPELVEDIGCWCDSFPSALND-----ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC  239 (396)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~G~~~~~~g~~~~~r~~~~~~~  239 (396)
                      ++..+...+...+.........     .............+....+.....+....+.+||.++.++...+.++..++..
T Consensus       256 ~~~~~~~~i~e~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GplaR~~~~~~~~~~~~~~~~  335 (437)
T 1yq9_H          256 VDDFNPDLIEEHVKYSWYEGADAHHPYKGVTKPKWTEFHGEDRYSWMKAPRYKGEAFEVGPLASVLVAYAKKHEPTVKAV  335 (437)
T ss_dssp             CBCCCGGGEEEECTTTTBSSSCCBCGGGCCCCBCCCCTTGGGCCCSSCEEEETTBCCBCSHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCHHHHHH
T ss_conf             45558678520356122057644587556777776534444664133213436775101448888742133570378999


Q ss_pred             CCCCC-CCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             34677-540010123201221100011687589999999621035
Q gi|254780855|r  240 YSELD-FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGK  283 (396)
Q Consensus       240 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~  283 (396)
                      +...+ ........++.+++...|..+..++..+..+.+++....
T Consensus       336 ~~~~~~~~~~~~~~~~~~~r~~aR~~E~~~~~~~~~~~l~~~~~~  380 (437)
T 1yq9_H          336 DLVLKTLGVGPEALFSTLGRTAARGIQCLTAAQEVEVWLDKLEAN  380 (437)
T ss_dssp             HHHHHHHTCCGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             999986399876678758889999999999999999999720431