HHsearch alignment of GI: 254780855 and MMDB domain: 1yq9_H_56-492
>1yq9_H (H:56-492) Periplasmic [NIFE] hydrogenase large subunit; oxidoreductase; 2.35A {Desulfovibrio gigas}
Probab=99.54 E-value=1.1e-20 Score=162.93 Aligned_cols=276 Identities=9% Similarity=-0.179 Sum_probs=232.0
Q ss_pred EEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 59984068686667755999998399899999880411578898740989878554431212344888999999999998
Q gi|254780855|r 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKL 87 (396)
Q Consensus 8 ~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~a 87 (396)
.+.+..+|+|+...+++++.+.+.++.+.++...+++.+||+|++++++.+.+++.+.+|+||+|+.+|.+|++.|+|.+
T Consensus 96 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~r~~~~~~~~h~~a~~~a~e~~ 175 (437)
T 1yq9_H 96 LKAVQAKVKALVESGQLGIFTNAYFLGGHPAYVLPAEVDLIATAHYLEALRVQVKAARAMAIFGAKNPHTQFTVVGGCTN 175 (437)
T ss_dssp HHHHHHHHHHHHHTTCCGGGTTCTTTTCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSSCCCEETTEECC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECEEEE
T ss_conf 99999999988864011311354435788621266111023468899999999999999999828886568067685833
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCC
Q ss_conf 38857888999999999999999889998743343056---418999999999999789975597647633653620007
Q gi|254780855|r 88 LGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA---LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQD 164 (396)
Q Consensus 88 ~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~---~~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~ 164 (396)
.++++|++++.+|.++.+++++++|+++++.+....+. .........+++....+++.++|+++|+...++||+.+.
T Consensus 176 ~~~~~~~~~~~~r~~~~e~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~gG~~~~ 255 (437)
T 1yq9_H 176 YDSLRPERIAEFRKLYKEVREFIEQVYITDLLAVAGFYKNWAGIGKTSNFLTCGEFPTDEYDLNSRYTPQGVIWGNDLSK 255 (437)
T ss_dssp GGGGSHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTGGGGGSSCCCCEEECCBCCSSTTCGGGSSBCCEEECTTCTTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHCCCCCEEECCCCCC
T ss_conf 25544789999999999999999998876899989888767663365420002654445554133036764488885342
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH-----HHHHHHCCHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCC
Q ss_conf 8989999999999999999999-----99998448333442122112303333102356651013676010210175443
Q gi|254780855|r 165 IPPELVEDIGCWCDSFPSALND-----ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239 (396)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~G~~~~~~g~~~~~r~~~~~~~ 239 (396)
++..+...+...+......... .............+....+.....+....+.+||.++.++...+.++..++..
T Consensus 256 ~~~~~~~~i~e~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GplaR~~~~~~~~~~~~~~~~ 335 (437)
T 1yq9_H 256 VDDFNPDLIEEHVKYSWYEGADAHHPYKGVTKPKWTEFHGEDRYSWMKAPRYKGEAFEVGPLASVLVAYAKKHEPTVKAV 335 (437)
T ss_dssp CBCCCGGGEEEECTTTTBSSSCCBCGGGCCCCBCCCCTTGGGCCCSSCEEEETTBCCBCSHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCCCHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCHHHHHH
T ss_conf 45558678520356122057644587556777776534444664133213436775101448888742133570378999
Q ss_pred CCCCC-CCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 34677-540010123201221100011687589999999621035
Q gi|254780855|r 240 YSELD-FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGK 283 (396)
Q Consensus 240 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 283 (396)
+...+ ........++.+++...|..+..++..+..+.+++....
T Consensus 336 ~~~~~~~~~~~~~~~~~~~r~~aR~~E~~~~~~~~~~~l~~~~~~ 380 (437)
T 1yq9_H 336 DLVLKTLGVGPEALFSTLGRTAARGIQCLTAAQEVEVWLDKLEAN 380 (437)
T ss_dssp HHHHHHHTCCGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999986399876678758889999999999999999999720431