HHsearch results for GI: 254780855 and protein with PDBid: 1cc1_L
>1cc1_L Hydrogenase (large subunit); NI-Fe-Se hydrogenase, oxidoreductase; 2.15A {Desulfomicrobium baculatum} SCOP: e.18.1.1
Probab=100.00 E-value=0 Score=594.01 Aligned_cols=387 Identities=17% Similarity=0.144 Sum_probs=296.3
Q ss_pred CCCEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 56159984068686667755999998399899999880411578898740989878554431212344888999999999
Q gi|254780855|r 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAV 84 (396)
Q Consensus 5 ~~~~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~Ai 84 (396)
+..+.+|.++|++ ++|||++++++||||+|++|+++ |++|||||+||+||+|+|++.||+|||||||++|++|+++|+
T Consensus 8 ~~~~~~I~idPit-RiEGh~~l~v~vd~~~V~~a~~~-~~~~RGfEk~l~Gr~~~da~~i~~RICGiC~~aH~lA~~~Av 85 (498)
T 1cc1_L 8 ADGKVKISIDPLT-RVEGHLKIEVEVKDGKVVDAKCS-GGMFRGFEQILRGRDPRDSSQIVQRICGVCPTAHCTASVMAQ 85 (498)
T ss_dssp ----CEEEESSCC-SSBSCEEEEEEEETTEEEEEEEE-ECBCCCHHHHTTTSCGGGHHHHGGGGCSSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCC-EEEEEEEEEEEECCCEEEEEEEC-CCCCCHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 7981699988866-25403899999809989999990-432325999977999889898861410027878999999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------------------------HHH
Q ss_conf 998388578889999999999999998899987433430564-----------------------------------189
Q gi|254780855|r 85 EKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL-----------------------------------TPP 129 (396)
Q Consensus 85 E~a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~-----------------------------------~~~ 129 (396)
|+|+||+||++|+++|+|++++|+||||++|||+|+.+++.. ..+
T Consensus 86 E~a~gi~vp~~a~~lR~ll~~~e~i~sH~lh~~~l~~pD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (498)
T 1cc1_L 86 DDAFGVKVTTNGRITRNLIFGANYLQSHILHFYHLAALDYVKGPDVSPFVPRYANADLLTDRIKDGAKADATNTYGLNQY 165 (498)
T ss_dssp HHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTSCCCSSTTSCSCCTTCCCHHHHCCSHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 99809988988999999999999999989999875111321554335021200112566677652010000212358999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HC----CH------HHH
Q ss_conf 99999999999789975597647633653620007898999999999999999999999998-44----83------334
Q gi|254780855|r 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLL-TG----NR------IFK 198 (396)
Q Consensus 130 ~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~------~~~ 198 (396)
.+++++|+.++++++++||+++||++++|||++++++.+.+.++...++...+++......+ .. .. ...
T Consensus 166 ~~al~~r~~~~~i~~~~gG~~~h~~~~~pGGv~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 245 (498)
T 1cc1_L 166 LKALEIRRICHEMVAMFGGRMPHVQGMVVGGATEIPTADKVAEYAARFKEVQKFVIEEYLPLIYTLGSVYTDLFETGIGW 245 (498)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSSSCSSEETTEESSCCCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGGSSCCCC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999999997499846584346885788999999999999999999999877899999999877776537773
Q ss_pred HHHCCEEEECCCCCCCCCC--CCCCCCCCCCCCHHHHCCCCCCCCCCCCC--------------CEEECCCCCHHHHHCC
Q ss_conf 4212211230333310235--66510136760102101754433467754--------------0010123201221100
Q gi|254780855|r 199 QRNVNIGTVKLEDAWGWGF--SGVMIRGSGAAWDLRKSQPYECYSELDFD--------------IPIGKHGDCYDRYLVR 262 (396)
Q Consensus 199 ~~~~~~g~~~~~~~~~~~~--~G~~~~~~g~~~~~r~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~ 262 (396)
.++...|.+........+. .|....+++..+|.++..+|..+...++. .......++|.+.+.+
T Consensus 246 ~~~~~~g~~~~~~~~~~~~~~~g~~~~g~~~~~d~~~i~e~~~~~~~~~~~~~~~~~~~~~t~p~~~~~~~ys~~k~p~~ 325 (498)
T 1cc1_L 246 KNVIAFGVFPEDDDYKTFLLKPGVYIDGKDEEFDSKLVKEYVGHSFFDHSAPGGLHYSVGETNPNPDKPGAYSFVKAPRY 325 (498)
T ss_dssp CCEEECCEEESSTTSCCEEECCEEEETTEEECCCGGGEEEECTTBTBCCSSSSCEEGGGCCCCBCTTCTTCCBSCCEEEE
T ss_pred CCEEEEEECCCCCCHHHCCCCCCEEEECCCEECCHHHEEECCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCEE
T ss_conf 31367410036653444013684586077635345571542673145235666657656534204555554431036211
Q ss_pred CHHHHHHHHHHHHHHHHHC-------------CC----------CCCCCCCCCCHHHCC--HHHHHHHHHHHHHHCCCCC
Q ss_conf 0116875899999996210-------------35----------786720111123030--4489999756754305755
Q gi|254780855|r 263 MMEMRESVKIIRQCVNRLL-------------GK----------NKVGPVSASDPKIVP--PKRADMKRSMESLIHHFKL 317 (396)
Q Consensus 263 ~~~~~~s~~~~~~~~~~~~-------------~~----------~~~~~~~~~~~~~~~--~~~~~~~~~~e~l~~~~~~ 317 (396)
....+++++++|..+.... .. ..........++..+ .+...+.++++.+......
T Consensus 326 ~~~~~evGPlAR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~aR~~E~~~~~~~i~~~l~~~~~~~~~ 405 (498)
T 1cc1_L 326 KDKPCEVGPLARMWVQNPELSPVGQKLLKELYGIEAKKFRDLGDKAFSIMGRHVLRAEETWLTAVAVEKWLKQVQPGAET 405 (498)
T ss_dssp TTBCCBCSHHHHHHHHCCBCCHHHHHHHHHHHCCCCSBGGGGGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCCC
T ss_pred CCCCHHHCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 58612125889997532335820689988765410243035676445729999999999999999999999727899974
Q ss_pred CCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCH---------HHHHHHHCCCCCCH------HHH
Q ss_conf 577761589748999988951179999987998088999835875686---------88999970880575------999
Q gi|254780855|r 318 YTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VSA 382 (396)
Q Consensus 318 ~~~~~~~~~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT~~N~---------~~~e~al~G~~i~D------~~~ 382 (396)
......+++|+|+|+||||||+|+|||++| ||+|++||||+||+||+ +++|++|+|++++| +++
T Consensus 406 ~~~~~~p~~G~G~G~vEApRG~L~H~~~i~-dg~I~~~~ii~PT~~N~~p~~~~~~~~~~e~~l~g~~~~d~~~~~~~~~ 484 (498)
T 1cc1_L 406 YVKSEIPDAAEGTGFTEAPRGALLHYLKIK-DKKIENYQIVSATLWNANPRDDMGQRGPIEEALIGVPVPDIKNPVNVGR 484 (498)
T ss_dssp BCCCCCCSSEEEEEEEEETTEEEEEEEEEE-TTEEEEEEEEETHHHHSCCCCTTCCCCHHHHHHTTCBCSCTTSCHHHHH
T ss_pred CCCCCCCCCCEEEEEEECCCCCEEEEEEEE-CCEEEEEEEECCCCCCCCCHHHCCCHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf 466899998289999987531218999997-9999888998987222521000245349999857998788534576757
Q ss_pred HHHHCCCCCCCC
Q ss_conf 897609120553
Q gi|254780855|r 383 ILGSLDIVFGEV 394 (396)
Q Consensus 383 iirSfDpC~sC~ 394 (396)
+|||||||+||+
T Consensus 485 iirs~DPCisCa 496 (498)
T 1cc1_L 485 LVRSYDPXLGCA 496 (498)
T ss_dssp HHHHTCCBHHHH
T ss_pred HHCCCCCCCCCC
T ss_conf 112469874364