HHsearch results for GI: 254780855 and protein with PDBid: 1cc1_L

>1cc1_L Hydrogenase (large subunit); NI-Fe-Se hydrogenase, oxidoreductase; 2.15A {Desulfomicrobium baculatum} SCOP: e.18.1.1
Probab=100.00  E-value=0  Score=594.01  Aligned_cols=387  Identities=17%  Similarity=0.144  Sum_probs=296.3

Q ss_pred             CCCEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             56159984068686667755999998399899999880411578898740989878554431212344888999999999
Q gi|254780855|r    5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAV   84 (396)
Q Consensus         5 ~~~~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~Ai   84 (396)
                      +..+.+|.++|++ ++|||++++++||||+|++|+++ |++|||||+||+||+|+|++.||+|||||||++|++|+++|+
T Consensus         8 ~~~~~~I~idPit-RiEGh~~l~v~vd~~~V~~a~~~-~~~~RGfEk~l~Gr~~~da~~i~~RICGiC~~aH~lA~~~Av   85 (498)
T 1cc1_L            8 ADGKVKISIDPLT-RVEGHLKIEVEVKDGKVVDAKCS-GGMFRGFEQILRGRDPRDSSQIVQRICGVCPTAHCTASVMAQ   85 (498)
T ss_dssp             ----CEEEESSCC-SSBSCEEEEEEEETTEEEEEEEE-ECBCCCHHHHTTTSCGGGHHHHGGGGCSSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCC-EEEEEEEEEEEECCCEEEEEEEC-CCCCCHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             7981699988866-25403899999809989999990-432325999977999889898861410027878999999999


Q ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------------------------HHH
Q ss_conf             998388578889999999999999998899987433430564-----------------------------------189
Q gi|254780855|r   85 EKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL-----------------------------------TPP  129 (396)
Q Consensus        85 E~a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~-----------------------------------~~~  129 (396)
                      |+|+||+||++|+++|+|++++|+||||++|||+|+.+++..                                   ..+
T Consensus        86 E~a~gi~vp~~a~~lR~ll~~~e~i~sH~lh~~~l~~pD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (498)
T 1cc1_L           86 DDAFGVKVTTNGRITRNLIFGANYLQSHILHFYHLAALDYVKGPDVSPFVPRYANADLLTDRIKDGAKADATNTYGLNQY  165 (498)
T ss_dssp             HHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTSCCCSSTTSCSCCTTCCCHHHHCCSHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             99809988988999999999999999989999875111321554335021200112566677652010000212358999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HC----CH------HHH
Q ss_conf             99999999999789975597647633653620007898999999999999999999999998-44----83------334
Q gi|254780855|r  130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLL-TG----NR------IFK  198 (396)
Q Consensus       130 ~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~------~~~  198 (396)
                      .+++++|+.++++++++||+++||++++|||++++++.+.+.++...++...+++......+ ..    ..      ...
T Consensus       166 ~~al~~r~~~~~i~~~~gG~~~h~~~~~pGGv~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  245 (498)
T 1cc1_L          166 LKALEIRRICHEMVAMFGGRMPHVQGMVVGGATEIPTADKVAEYAARFKEVQKFVIEEYLPLIYTLGSVYTDLFETGIGW  245 (498)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSSSCSSEETTEESSCCCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGGSSCCCC
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             99999999999999997499846584346885788999999999999999999999877899999999877776537773


Q ss_pred             HHHCCEEEECCCCCCCCCC--CCCCCCCCCCCCHHHHCCCCCCCCCCCCC--------------CEEECCCCCHHHHHCC
Q ss_conf             4212211230333310235--66510136760102101754433467754--------------0010123201221100
Q gi|254780855|r  199 QRNVNIGTVKLEDAWGWGF--SGVMIRGSGAAWDLRKSQPYECYSELDFD--------------IPIGKHGDCYDRYLVR  262 (396)
Q Consensus       199 ~~~~~~g~~~~~~~~~~~~--~G~~~~~~g~~~~~r~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~  262 (396)
                      .++...|.+........+.  .|....+++..+|.++..+|..+...++.              .......++|.+.+.+
T Consensus       246 ~~~~~~g~~~~~~~~~~~~~~~g~~~~g~~~~~d~~~i~e~~~~~~~~~~~~~~~~~~~~~t~p~~~~~~~ys~~k~p~~  325 (498)
T 1cc1_L          246 KNVIAFGVFPEDDDYKTFLLKPGVYIDGKDEEFDSKLVKEYVGHSFFDHSAPGGLHYSVGETNPNPDKPGAYSFVKAPRY  325 (498)
T ss_dssp             CCEEECCEEESSTTSCCEEECCEEEETTEEECCCGGGEEEECTTBTBCCSSSSCEEGGGCCCCBCTTCTTCCBSCCEEEE
T ss_pred             CCEEEEEECCCCCCHHHCCCCCCEEEECCCEECCHHHEEECCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCEE
T ss_conf             31367410036653444013684586077635345571542673145235666657656534204555554431036211


Q ss_pred             CHHHHHHHHHHHHHHHHHC-------------CC----------CCCCCCCCCCHHHCC--HHHHHHHHHHHHHHCCCCC
Q ss_conf             0116875899999996210-------------35----------786720111123030--4489999756754305755
Q gi|254780855|r  263 MMEMRESVKIIRQCVNRLL-------------GK----------NKVGPVSASDPKIVP--PKRADMKRSMESLIHHFKL  317 (396)
Q Consensus       263 ~~~~~~s~~~~~~~~~~~~-------------~~----------~~~~~~~~~~~~~~~--~~~~~~~~~~e~l~~~~~~  317 (396)
                      ....+++++++|..+....             ..          ..........++..+  .+...+.++++.+......
T Consensus       326 ~~~~~evGPlAR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~aR~~E~~~~~~~i~~~l~~~~~~~~~  405 (498)
T 1cc1_L          326 KDKPCEVGPLARMWVQNPELSPVGQKLLKELYGIEAKKFRDLGDKAFSIMGRHVLRAEETWLTAVAVEKWLKQVQPGAET  405 (498)
T ss_dssp             TTBCCBCSHHHHHHHHCCBCCHHHHHHHHHHHCCCCSBGGGGGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCCC
T ss_pred             CCCCHHHCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             58612125889997532335820689988765410243035676445729999999999999999999999727899974


Q ss_pred             CCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCH---------HHHHHHHCCCCCCH------HHH
Q ss_conf             577761589748999988951179999987998088999835875686---------88999970880575------999
Q gi|254780855|r  318 YTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VSA  382 (396)
Q Consensus       318 ~~~~~~~~~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT~~N~---------~~~e~al~G~~i~D------~~~  382 (396)
                      ......+++|+|+|+||||||+|+|||++| ||+|++||||+||+||+         +++|++|+|++++|      +++
T Consensus       406 ~~~~~~p~~G~G~G~vEApRG~L~H~~~i~-dg~I~~~~ii~PT~~N~~p~~~~~~~~~~e~~l~g~~~~d~~~~~~~~~  484 (498)
T 1cc1_L          406 YVKSEIPDAAEGTGFTEAPRGALLHYLKIK-DKKIENYQIVSATLWNANPRDDMGQRGPIEEALIGVPVPDIKNPVNVGR  484 (498)
T ss_dssp             BCCCCCCSSEEEEEEEEETTEEEEEEEEEE-TTEEEEEEEEETHHHHSCCCCTTCCCCHHHHHHTTCBCSCTTSCHHHHH
T ss_pred             CCCCCCCCCCEEEEEEECCCCCEEEEEEEE-CCEEEEEEEECCCCCCCCCHHHCCCHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf             466899998289999987531218999997-9999888998987222521000245349999857998788534576757


Q ss_pred             HHHHCCCCCCCC
Q ss_conf             897609120553
Q gi|254780855|r  383 ILGSLDIVFGEV  394 (396)
Q Consensus       383 iirSfDpC~sC~  394 (396)
                      +|||||||+||+
T Consensus       485 iirs~DPCisCa  496 (498)
T 1cc1_L          485 LVRSYDPXLGCA  496 (498)
T ss_dssp             HHHHTCCBHHHH
T ss_pred             HHCCCCCCCCCC
T ss_conf             112469874364