HHsearch results for GI: 254780855 and protein with PDBid: 1yq9_H
>1yq9_H Periplasmic [NIFE] hydrogenase large subunit; oxidoreductase; 2.35A {Desulfovibrio gigas} SCOP: e.18.1.1 PDB: 2frv_L 1frv_B
Probab=100.00 E-value=0 Score=570.32 Aligned_cols=389 Identities=16% Similarity=0.149 Sum_probs=280.9
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 97445615998406868666775599999839989999988041157889874098987855443121234488899999
Q gi|254780855|r 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAY 80 (396)
Q Consensus 1 ~~~~~~~~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa 80 (396)
|.+-.+|+ |.|.|++ ++|||+++++++|||+|++|+. .+++|||||+||+||+|+|++.||+|||||||++|++||
T Consensus 1 ~~~~~~~~--I~IdPit-RiEGh~~i~v~~e~g~V~~a~~-~~~~~RGfE~~l~Gr~~~da~~it~RICGIC~~aH~~A~ 76 (536)
T 1yq9_H 1 MSEMQGNK--IVVDPIT-RIEGHLRIEVEVEGGKIKNAWS-MSTLFRGLEMILKGRDPRDAQHFTQRACGVCTYVHALAS 76 (536)
T ss_dssp ------CE--EEECSCC-SSBSCEEEEEEEETTEEEEEEE-EECBCCCHHHHHTTSCGGGHHHHHHTTCSSSTTHHHHHH
T ss_pred CCCCCCCE--EEECCCC-CEEEEEEEEEEEECCEEEEEEE-ECCCCCHHHHHHCCCCHHHHHHHHHHHHEECHHHHHHHH
T ss_conf 98678974--8978987-5020389999982998999999-037652698986799988988775133130786899999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----------------------------------
Q ss_conf 9999998388578889999999999999998899987433430564----------------------------------
Q gi|254780855|r 81 ALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL---------------------------------- 126 (396)
Q Consensus 81 ~~AiE~a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~---------------------------------- 126 (396)
++|+|+|+||+||++|++||||++++|+||||++|||+|+.||+..
T Consensus 77 ~~AvE~a~gi~vp~~a~~lR~L~~~~e~i~sH~l~l~~l~~PD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 156 (536)
T 1yq9_H 77 VRAVDNCVGVKIPENATLMRNLTMGAQYMHDHLVHFYHLHALDWVNVANALNADPAKAARLANDLSPRKTTTESLKAVQA 156 (536)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTCCSGGGGGCCHHHHHHHHHHHCSSCCCHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 99999982999798899999999999999999999987614032044223436868898775322753344589999999
Q ss_pred -------------------------------------HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCC--H
Q ss_conf -------------------------------------1899999999999978997559764763365362000789--8
Q gi|254780855|r 127 -------------------------------------TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIP--P 167 (396)
Q Consensus 127 -------------------------------------~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~~~--~ 167 (396)
..+.+++++++.+++++++++|+++|+++++|||+++.++ +
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~gh~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~G~~~h~~~~v~GGv~~~~~~~~ 236 (536)
T 1yq9_H 157 KVKALVESGQLGIFTNAYFLGGHPAYVLPAEVDLIATAHYLEALRVQVKAARAMAIFGAKNPHTQFTVVGGCTNYDSLRP 236 (536)
T ss_dssp HHHHHHHTTCCGGGTTCTTTTCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSSCCCEETTEECCGGGGSH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECEEECCCCCCH
T ss_conf 99888875430444444334788620155200124578999999999999999999728875677426454714676588
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHCCEEE----EC-----CCC---CCCCCCCCCCCCCCCCCC-----
Q ss_conf 99999999999999999999999844-8333442122112----30-----333---310235665101367601-----
Q gi|254780855|r 168 ELVEDIGCWCDSFPSALNDISDLLTG-NRIFKQRNVNIGT----VK-----LED---AWGWGFSGVMIRGSGAAW----- 229 (396)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~----~~-----~~~---~~~~~~~G~~~~~~g~~~----- 229 (396)
+.+.+++..++....+.+.....+.. ...+......++. .. ... ...+...|.+...+....
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 316 (536)
T 1yq9_H 237 ERIAEFRKLYKEVREFIEQVYITDLLAVAGFYKNWAGIGKTSNFLTCGEFPTDEYDLNSRYTPQGVIWGNDLSKVDDFNP 316 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTGGGGGSSCCCCEEECCBCCSSTTCGGGSSBCCEEECTTCTTCCBCCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCEEEECCCCCCCCCCCH
T ss_conf 99999999999999999998888999999887766650575541202655566665003035750798897442566588
Q ss_pred -------------HHHHCCCCCCCCCCCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCC-------------
Q ss_conf -------------021017544334677540010123201221100011687589999999621035-------------
Q gi|254780855|r 230 -------------DLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGK------------- 283 (396)
Q Consensus 230 -------------~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~------------- 283 (396)
+....+||.......+.......+++|++.+.+....+++++++|+........
T Consensus 317 ~~i~e~v~~s~y~~~~~~~p~~~~t~p~~~~~~~~~~ys~~k~pry~~~~~evGPlAR~~~~~~~~~~~~~~~~~~~~~~ 396 (536)
T 1yq9_H 317 DLIEEHVKYSWYEGADAHHPYKGVTKPKWTEFHGEDRYSWMKAPRYKGEAFEVGPLASVLVAYAKKHEPTVKAVDLVLKT 396 (536)
T ss_dssp GGEEEECTTTTBSSSCCBCGGGCCCCBCCCCTTGGGCCCSSCEEEETTBCCBCSHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHEECHHHHCCCHHHHHHHHHHHH
T ss_conf 88750355132057543587667567765434444553010002435776302420411200221380267899998886
Q ss_pred ------CCCCCCCCCCHHHCCH--HHHHHHHHHHHHHCCC-----CCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCC
Q ss_conf ------7867201111230304--4899997567543057-----55577761589748999988951179999987998
Q gi|254780855|r 284 ------NKVGPVSASDPKIVPP--KRADMKRSMESLIHHF-----KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGN 350 (396)
Q Consensus 284 ------~~~~~~~~~~~~~~~~--~~~~~~~~~e~l~~~~-----~~~~~~~~~~~G~GvG~vEAPRG~L~H~~~~~~~g 350 (396)
.......+..++.... +...++++++.+.... +...+...+++|+|+|++|||||+|+||+++ +||
T Consensus 397 ~~~~~~~~~~~~~R~~aR~~E~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~p~~g~GvG~vEApRG~L~H~~~~-~~G 475 (536)
T 1yq9_H 397 LGVGPEALFSTLGRTAARGIQCLTAAQEVEVWLDKLEANVKAGKDDLYTDWQYPTESQGVGFVNAPRGMLSHWIVQ-RGG 475 (536)
T ss_dssp HTCCGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCBCCCCCCSEEEEEEEEEETTEEEEEEEEE-ETT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEE-CCC
T ss_conf 2888765678899999999999999999999997223206556776557788999717999998833033899998-899
Q ss_pred CEEEEEEECCCCCCH---------HHHHHHHCCCCCCH------HHHHHHHCCCCCCCC
Q ss_conf 088999835875686---------88999970880575------999897609120553
Q gi|254780855|r 351 KPYRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394 (396)
Q Consensus 351 ~i~~~~ii~PT~~N~---------~~~e~al~G~~i~D------~~~iirSfDpC~sC~ 394 (396)
+|++||||+||+||+ +++|++|+|++++| ++++|||||||+||+
T Consensus 476 ~I~~~~ii~PT~~N~~p~~~~~~~~~~e~~l~g~~~~d~~~~~~i~~~iRs~DPCisCa 534 (536)
T 1yq9_H 476 KIENFQLVVPSTWNLGPRCAEGKLSAVEQALIGTPIADPKRPVEILRTVHSYDPCIACG 534 (536)
T ss_dssp EEEEEEEECHHHHHHCCCCTTCCCCHHHHHHTTCBCSCTTSCHHHHHHHHHTCCBHHHH
T ss_pred EEEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCC
T ss_conf 89898898987010364222556009999847998888631777757872267650200