HHsearch results for GI: 254780855 and protein with PDBid: 1yqw_Q
>1yqw_Q Periplasmic [NIFE] hydrogenase large subunit; NI-Fe hydrogenase unready state, oxidoreductase; 1.83A {Desulfovibrio fructosovorans} PDB: 1yrq_H 3h3x_Q 3cus_Q 3cur_H 1frf_L
Probab=100.00 E-value=0 Score=581.25 Aligned_cols=386 Identities=15% Similarity=0.110 Sum_probs=286.9
Q ss_pred CCEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 61599840686866677559999983998999998804115788987409898785544312123448889999999999
Q gi|254780855|r 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVE 85 (396)
Q Consensus 6 ~~~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE 85 (396)
+++-.|.|.|++ ++|||++++++||||+|++|+++ +++|||||+||+||+|+|+++||+|||||||++|++|+++|+|
T Consensus 11 ~~~~~i~IdP~t-RiEGh~~l~v~vd~g~V~~a~~~-~~~~RGfEk~l~Gr~~~da~~it~RICGiC~~aH~~A~~~AvE 88 (549)
T 1yqw_Q 11 TFTGPIVVDPIT-RIEGHLRIMVEVENGKVKDAWSS-SQLFRGLEIILKGRDPRDAQHFTQRACGVCTYVHALASSRCVD 88 (549)
T ss_dssp CCCEEEEECSCC-SSBSCEEEEEEEETTEEEEEEEE-ECBCCCHHHHHTTSCGGGHHHHHHTTCSTTTTHHHHHHHHHHH
T ss_pred CCCCEEEECCCC-CEECCEEEEEEEECCEEEEEEEC-CCCCCHHHHHHCCCCHHHHHHHHHHHHEECHHHHHHHHHHHHH
T ss_conf 875006977867-02321799999969999999991-5656469999779998898877503423484589999999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------------------------------------
Q ss_conf 98388578889999999999999998899987433430564---------------------------------------
Q gi|254780855|r 86 KLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL--------------------------------------- 126 (396)
Q Consensus 86 ~a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~--------------------------------------- 126 (396)
+|+||+||++|++||+|++++|+||||++|||+|+.+++..
T Consensus 89 ~a~gi~vp~~a~~lR~L~~~~e~i~sH~l~~~~l~~pD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~ 168 (549)
T 1yqw_Q 89 DAVKVSIPANARMMRNLVMASQYLHDHLVHFYHLHALDWVDVTAALKADPNKAAKLAASIAPARPGNSAKALKAVQDKLK 168 (549)
T ss_dssp HHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTCCTGGGGGSCHHHHHHHHHTTSCCCGGGSHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 98299889789999999999999998899998751530012100022342289997420145566543015789999999
Q ss_pred ----------------------------------HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCC--CHHHH
Q ss_conf ----------------------------------189999999999997899755976476336536200078--98999
Q gi|254780855|r 127 ----------------------------------TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDI--PPELV 170 (396)
Q Consensus 127 ----------------------------------~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~~--~~~~~ 170 (396)
.+|.+++++|+.+++++++++|+++||++++|||++..+ +.+.+
T Consensus 169 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~r~~~~~~~~~l~G~~~h~~~~~~GGv~~~~~~~~~~l 248 (549)
T 1yqw_Q 169 AFVESGQLGIFTNAYFLGGHKAYYLPPEVNLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGCSNYQGLTKDPL 248 (549)
T ss_dssp HHHHTTCCGGGTTCTTTTCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSSCCCEETTEECCGGGGSHHHH
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECEECCCCCCCHHHH
T ss_conf 87740334434454446787512467332013568899999999999999999749874556167142705577899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHCCEEE---------ECCCCCCCCCCCCCCCCCCCC----------CCH
Q ss_conf 999999999999999999998-448333442122112---------303333102356651013676----------010
Q gi|254780855|r 171 EDIGCWCDSFPSALNDISDLL-TGNRIFKQRNVNIGT---------VKLEDAWGWGFSGVMIRGSGA----------AWD 230 (396)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~---------~~~~~~~~~~~~G~~~~~~g~----------~~~ 230 (396)
.+++..++...++..+.+..+ .....+...+...+. +...........+.....+|. .+|
T Consensus 249 ~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~g~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~D 328 (549)
T 1yqw_Q 249 ANYLALSKEVCQFVNECYIPDLLAVAGFYKDWGGIGGTSNYLAFGEFATDDSSPSKHLATSQFPSGVITGRDLGKVDNVD 328 (549)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHTGGGGGSSCCSCEEECCEEESCCSSHHHHHHHEEECCEEECTTCTTCCBCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
T ss_conf 99999999999999987899999999999988652785442013014677655533456432467248767455443257
Q ss_pred ----------------HHHCCCCCCCCCCCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCC------------
Q ss_conf ----------------2101754433467754001012320122110001168758999999962103------------
Q gi|254780855|r 231 ----------------LRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLG------------ 282 (396)
Q Consensus 231 ----------------~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~------------ 282 (396)
....+||......++........++|++.+.+.....++++++|+.......
T Consensus 329 ~~~i~E~v~~s~y~~~~~~~~p~~~~t~p~~~~~~~~~~ys~~k~p~~~~~~~evGPlAR~~~~~~~~~~~~~~~~~~~~ 408 (549)
T 1yqw_Q 329 LGAIYEDVKYSWYAPGGDGKHPYDGVTDPKYTKLDDKDHYSWMKAPRYKGKAMEVGPLARTFIAYAKGQPDFKKVVDMVL 408 (549)
T ss_dssp GGGEEEECTTBTBCTTCTTBCGGGCCCCBCCCCTTBTTBCBSSCEEEETTBCCBCSHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCEEECCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHCCCCEECCHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 21027615611025787666765676777643223345522430533438840123899875022015811378899766
Q ss_pred -------CCCCCCCCCCCHHHCCH--HHHHHHHHHHHHHCC----CCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCC
Q ss_conf -------57867201111230304--489999756754305----75557776158974899998895117999998799
Q gi|254780855|r 283 -------KNKVGPVSASDPKIVPP--KRADMKRSMESLIHH----FKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGG 349 (396)
Q Consensus 283 -------~~~~~~~~~~~~~~~~~--~~~~~~~~~e~l~~~----~~~~~~~~~~~~G~GvG~vEAPRG~L~H~~~~~~~ 349 (396)
........+..+++.+. +...+.++++.+... .........+++|+|+|++|||||+|+||++++ |
T Consensus 409 ~~~~~~~~~~~~~~~R~~AR~~E~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~p~~g~G~G~vEAPRG~L~H~~~i~-~ 487 (549)
T 1yqw_Q 409 GKLSVPATALHSTLGRTAARGIETAIVCANMEKWIKEMADSGAKDNTLCAKWEMPEESKGVGLADAPRGALSHWIRIK-G 487 (549)
T ss_dssp HHHTCCGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCBCCCCCCSEEEEEEEEEETTEEEEEEEEEE-T
T ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEE-C
T ss_conf 532787666689499999999999999999999998460246778750677889997389999988772059999997-9
Q ss_pred CCEEEEEEECCCCCCHH---------HHHHHHCCCCCCH------HHHHHHHCCCCCCCC
Q ss_conf 80889998358756868---------8999970880575------999897609120553
Q gi|254780855|r 350 NKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLAD------VSAILGSLDIVFGEV 394 (396)
Q Consensus 350 g~i~~~~ii~PT~~N~~---------~~e~al~G~~i~D------~~~iirSfDpC~sC~ 394 (396)
|+|++||||+||+||++ ++|++|.|++++| ++++|||||||+||+
T Consensus 488 G~I~~~~ii~PTt~N~~p~~~~~~~~~~e~al~g~~v~d~~~~~~i~~viRs~DPC~sCa 547 (549)
T 1yqw_Q 488 KKIDNFQLVVPATWNLGPRGAQGDKSPVEEALIGTPIADPKRPVEILRTVHAFDPCIACG 547 (549)
T ss_dssp TEEEEEEEECHHHHHHCCCCTTCCCCHHHHHHTTCBCSCTTSCHHHHHHHHHTCCBHHHH
T ss_pred CEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 999798898886021462011457439999967998788742788878982078750210