HHsearch results for GI: 254780855 and protein with PDBid: 1yqw_Q

>1yqw_Q Periplasmic [NIFE] hydrogenase large subunit; NI-Fe hydrogenase unready state, oxidoreductase; 1.83A {Desulfovibrio fructosovorans} PDB: 1yrq_H 3h3x_Q 3cus_Q 3cur_H 1frf_L
Probab=100.00  E-value=0  Score=581.25  Aligned_cols=386  Identities=15%  Similarity=0.110  Sum_probs=286.9

Q ss_pred             CCEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             61599840686866677559999983998999998804115788987409898785544312123448889999999999
Q gi|254780855|r    6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVE   85 (396)
Q Consensus         6 ~~~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE   85 (396)
                      +++-.|.|.|++ ++|||++++++||||+|++|+++ +++|||||+||+||+|+|+++||+|||||||++|++|+++|+|
T Consensus        11 ~~~~~i~IdP~t-RiEGh~~l~v~vd~g~V~~a~~~-~~~~RGfEk~l~Gr~~~da~~it~RICGiC~~aH~~A~~~AvE   88 (549)
T 1yqw_Q           11 TFTGPIVVDPIT-RIEGHLRIMVEVENGKVKDAWSS-SQLFRGLEIILKGRDPRDAQHFTQRACGVCTYVHALASSRCVD   88 (549)
T ss_dssp             CCCEEEEECSCC-SSBSCEEEEEEEETTEEEEEEEE-ECBCCCHHHHHTTSCGGGHHHHHHTTCSTTTTHHHHHHHHHHH
T ss_pred             CCCCEEEECCCC-CEECCEEEEEEEECCEEEEEEEC-CCCCCHHHHHHCCCCHHHHHHHHHHHHEECHHHHHHHHHHHHH
T ss_conf             875006977867-02321799999969999999991-5656469999779998898877503423484589999999999


Q ss_pred             HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------------------------------------
Q ss_conf             98388578889999999999999998899987433430564---------------------------------------
Q gi|254780855|r   86 KLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL---------------------------------------  126 (396)
Q Consensus        86 ~a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~---------------------------------------  126 (396)
                      +|+||+||++|++||+|++++|+||||++|||+|+.+++..                                       
T Consensus        89 ~a~gi~vp~~a~~lR~L~~~~e~i~sH~l~~~~l~~pD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~  168 (549)
T 1yqw_Q           89 DAVKVSIPANARMMRNLVMASQYLHDHLVHFYHLHALDWVDVTAALKADPNKAAKLAASIAPARPGNSAKALKAVQDKLK  168 (549)
T ss_dssp             HHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTCCTGGGGGSCHHHHHHHHHTTSCCCGGGSHHHHHHHHHHHH
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf             98299889789999999999999998899998751530012100022342289997420145566543015789999999


Q ss_pred             ----------------------------------HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCC--CHHHH
Q ss_conf             ----------------------------------189999999999997899755976476336536200078--98999
Q gi|254780855|r  127 ----------------------------------TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDI--PPELV  170 (396)
Q Consensus       127 ----------------------------------~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~~--~~~~~  170 (396)
                                                        .+|.+++++|+.+++++++++|+++||++++|||++..+  +.+.+
T Consensus       169 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~r~~~~~~~~~l~G~~~h~~~~~~GGv~~~~~~~~~~l  248 (549)
T 1yqw_Q          169 AFVESGQLGIFTNAYFLGGHKAYYLPPEVNLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGCSNYQGLTKDPL  248 (549)
T ss_dssp             HHHHTTCCGGGTTCTTTTCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSSCCCEETTEECCGGGGSHHHH
T ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECEECCCCCCCHHHH
T ss_conf             87740334434454446787512467332013568899999999999999999749874556167142705577899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHCCEEE---------ECCCCCCCCCCCCCCCCCCCC----------CCH
Q ss_conf             999999999999999999998-448333442122112---------303333102356651013676----------010
Q gi|254780855|r  171 EDIGCWCDSFPSALNDISDLL-TGNRIFKQRNVNIGT---------VKLEDAWGWGFSGVMIRGSGA----------AWD  230 (396)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~---------~~~~~~~~~~~~G~~~~~~g~----------~~~  230 (396)
                      .+++..++...++..+.+..+ .....+...+...+.         +...........+.....+|.          .+|
T Consensus       249 ~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~g~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~D  328 (549)
T 1yqw_Q          249 ANYLALSKEVCQFVNECYIPDLLAVAGFYKDWGGIGGTSNYLAFGEFATDDSSPSKHLATSQFPSGVITGRDLGKVDNVD  328 (549)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHHHTGGGGGSSCCSCEEECCEEESCCSSHHHHHHHEEECCEEECTTCTTCCBCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
T ss_conf             99999999999999987899999999999988652785442013014677655533456432467248767455443257


Q ss_pred             ----------------HHHCCCCCCCCCCCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCC------------
Q ss_conf             ----------------2101754433467754001012320122110001168758999999962103------------
Q gi|254780855|r  231 ----------------LRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLG------------  282 (396)
Q Consensus       231 ----------------~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~------------  282 (396)
                                      ....+||......++........++|++.+.+.....++++++|+.......            
T Consensus       329 ~~~i~E~v~~s~y~~~~~~~~p~~~~t~p~~~~~~~~~~ys~~k~p~~~~~~~evGPlAR~~~~~~~~~~~~~~~~~~~~  408 (549)
T 1yqw_Q          329 LGAIYEDVKYSWYAPGGDGKHPYDGVTDPKYTKLDDKDHYSWMKAPRYKGKAMEVGPLARTFIAYAKGQPDFKKVVDMVL  408 (549)
T ss_dssp             GGGEEEECTTBTBCTTCTTBCGGGCCCCBCCCCTTBTTBCBSSCEEEETTBCCBCSHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CCCEEECCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHCCCCEECCHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf             21027615611025787666765676777643223345522430533438840123899875022015811378899766


Q ss_pred             -------CCCCCCCCCCCHHHCCH--HHHHHHHHHHHHHCC----CCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCC
Q ss_conf             -------57867201111230304--489999756754305----75557776158974899998895117999998799
Q gi|254780855|r  283 -------KNKVGPVSASDPKIVPP--KRADMKRSMESLIHH----FKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGG  349 (396)
Q Consensus       283 -------~~~~~~~~~~~~~~~~~--~~~~~~~~~e~l~~~----~~~~~~~~~~~~G~GvG~vEAPRG~L~H~~~~~~~  349 (396)
                             ........+..+++.+.  +...+.++++.+...    .........+++|+|+|++|||||+|+||++++ |
T Consensus       409 ~~~~~~~~~~~~~~~R~~AR~~E~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~p~~g~G~G~vEAPRG~L~H~~~i~-~  487 (549)
T 1yqw_Q          409 GKLSVPATALHSTLGRTAARGIETAIVCANMEKWIKEMADSGAKDNTLCAKWEMPEESKGVGLADAPRGALSHWIRIK-G  487 (549)
T ss_dssp             HHHTCCGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCBCCCCCCSEEEEEEEEEETTEEEEEEEEEE-T
T ss_pred             HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEE-C
T ss_conf             532787666689499999999999999999999998460246778750677889997389999988772059999997-9


Q ss_pred             CCEEEEEEECCCCCCHH---------HHHHHHCCCCCCH------HHHHHHHCCCCCCCC
Q ss_conf             80889998358756868---------8999970880575------999897609120553
Q gi|254780855|r  350 NKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLAD------VSAILGSLDIVFGEV  394 (396)
Q Consensus       350 g~i~~~~ii~PT~~N~~---------~~e~al~G~~i~D------~~~iirSfDpC~sC~  394 (396)
                      |+|++||||+||+||++         ++|++|.|++++|      ++++|||||||+||+
T Consensus       488 G~I~~~~ii~PTt~N~~p~~~~~~~~~~e~al~g~~v~d~~~~~~i~~viRs~DPC~sCa  547 (549)
T 1yqw_Q          488 KKIDNFQLVVPATWNLGPRGAQGDKSPVEEALIGTPIADPKRPVEILRTVHAFDPCIACG  547 (549)
T ss_dssp             TEEEEEEEECHHHHHHCCCCTTCCCCHHHHHHTTCBCSCTTSCHHHHHHHHHTCCBHHHH
T ss_pred             CEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf             999798898886021462011457439999967998788742788878982078750210