HHsearch results for GI: 254780855 and protein with PDBid: 3i9v_4
>3i9v_4 NADH-quinone oxidoreductase subunit 4; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_4* 3iam_4* 3ias_4* 3m9s_4*
Probab=100.00 E-value=0 Score=653.85 Aligned_cols=390 Identities=45% Similarity=0.831 Sum_probs=357.1
Q ss_pred CCCCCEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44561599840686866677559999983998999998804115788987409898785544312123448889999999
Q gi|254780855|r 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYAL 82 (396)
Q Consensus 3 ~~~~~~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~ 82 (396)
+.+++.|+|++||+||+++||+|++++||||+|+++++++||+|||||+||+||+|+|++.||+|||||||+||++|+++
T Consensus 20 ~~~~~~~~~~~Gp~hp~~~g~~r~~~~vdGe~V~~~~~~~G~~hRGfEkil~gr~~~~a~~i~~RICGiC~~aH~~A~~~ 99 (409)
T 3i9v_4 20 ELRTEVMTLNVGPQHPSTHGVLRLMVTLSGEEVLEVVPHIGYLHTGFEKTMEHRTYLQNITYTPRMDYLHSFAHDLAYAL 99 (409)
T ss_dssp ------CBCCBC-------CCCEECCBCSSSSCCBCCEECCTTCCCHHHHGGGSCTTGGGGTSTTSSSSSCHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCHHHHHHHCCCCHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 45775699832898888888718999970989999788357643789999759996881002162012248689999999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCC
Q ss_conf 99998388578889999999999999998899987433430564189999999999997899755976476336536200
Q gi|254780855|r 83 AVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVH 162 (396)
Q Consensus 83 AiE~a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~ 162 (396)
|+|+|+|++||++++++|+|++++++||||++|+|.++.+++....+..+++.|++++++++.++|.++|+...++||+.
T Consensus 100 AvE~a~gi~vp~ra~~lR~ll~e~~~i~sHll~~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~~g~~~~~~~~~~ggv~ 179 (409)
T 3i9v_4 100 AVEKLLGAVVPPRAETIRVILNELSRLASHLVFLGTGLLDLGALTPFFYAFRERETILDLFEWVTGQRFHHNYIRIGGVK 179 (409)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHSSSSSCCCBCSSBBS
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCEE
T ss_conf 99998299788789999999999999999999871236313561588889999999999999860763110331224430
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCC
Q ss_conf 07898999999999999999999999998448333442122112303333102356651013676010210175443346
Q gi|254780855|r 163 QDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242 (396)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~G~~~~~~g~~~~~r~~~~~~~~~~ 242 (396)
..++......+...++.......+..+++...+.+..+....|..........+..|+..++++++++.++..||..+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~g~~~~~~a~~~g~~~~~~~~~~v~~d~~~~~p~~~~~~ 259 (409)
T 3i9v_4 180 EDLPEEFVPELKKLLEVLPHRIDEYEALFAESPIFYERARGVGVIPPEVAIDLGLTGGSLRASGVNYDVRKAYPYSGYET 259 (409)
T ss_dssp SCCCTTHHHHHHHHHHHHHHHHHHHHHHHHSCTTHHHHHSSSSCBCHHHHHHHTCCSSSSGGGTCCCCHHHHSCCSSGGG
T ss_pred ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 36871677999999999999999999987508366763288600037889854877654566530343322366434566
Q ss_pred CCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 77540010123201221100011687589999999621035786720111123030448999975675430575557776
Q gi|254780855|r 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGY 322 (396)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~ 322 (396)
.++...+...++.+++...+..+..+|..+..+...+.+.... ..............+....+.+........+..
T Consensus 260 ~~~~~~~~~~Gd~~~~~~v~~~~~~~s~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (409)
T 3i9v_4 260 YTFDVPLGERGDVFDRMLVRIREMRESVKIIKQALERLEPGPV----RDPNPQITPPPRHLLETSMEAVIYHFKHYTEGF 335 (409)
T ss_dssp SCCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCC----BCCCTTTSCCCGGGGGTCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC----CCCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 6766677558862112122355555556778999975778761----000023130679999986664331354566677
Q ss_pred CCCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 15897489999889511799999879980889998358756868899997088057599989760912055359
Q gi|254780855|r 323 HVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396 (396)
Q Consensus 323 ~~~~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT~~N~~~~e~al~G~~i~D~~~iirSfDpC~sC~dr 396 (396)
++|+|+|+|+||||||+|+|||++|++|+|++||||+||+||++++|++|+|++++|++++|||||||+|||||
T Consensus 336 ~~p~Geg~g~vEAPRG~L~H~~~~d~~G~i~~~~ii~PT~~N~~~le~al~G~~i~D~~~iirS~DpC~sc~dr 409 (409)
T 3i9v_4 336 HPPKGEVYVPTESARGELGYYIVSDGGSMPYRVKVRAPSFVNLQSLPYACKGEQVPDMVAIIASLDPVMGDVDR 409 (409)
T ss_dssp CCCSEEEECCEEETTEEEEEEEEECSSSSCSEEEEECHHHHTTTTTTTTTSSSCSGGGTHHHHTTCCCHHHHHC
T ss_pred CCCCCEEEEEEECCCEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 58986799999858710899999979984999999898888999999997799178999998525975237789