HHsearch results for GI: 254780855 and protein with PDBid: 3i9v_4

>3i9v_4 NADH-quinone oxidoreductase subunit 4; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_4* 3iam_4* 3ias_4* 3m9s_4*
Probab=100.00  E-value=0  Score=653.85  Aligned_cols=390  Identities=45%  Similarity=0.831  Sum_probs=357.1

Q ss_pred             CCCCCEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             44561599840686866677559999983998999998804115788987409898785544312123448889999999
Q gi|254780855|r    3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYAL   82 (396)
Q Consensus         3 ~~~~~~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~   82 (396)
                      +.+++.|+|++||+||+++||+|++++||||+|+++++++||+|||||+||+||+|+|++.||+|||||||+||++|+++
T Consensus        20 ~~~~~~~~~~~Gp~hp~~~g~~r~~~~vdGe~V~~~~~~~G~~hRGfEkil~gr~~~~a~~i~~RICGiC~~aH~~A~~~   99 (409)
T 3i9v_4           20 ELRTEVMTLNVGPQHPSTHGVLRLMVTLSGEEVLEVVPHIGYLHTGFEKTMEHRTYLQNITYTPRMDYLHSFAHDLAYAL   99 (409)
T ss_dssp             ------CBCCBC-------CCCEECCBCSSSSCCBCCEECCTTCCCHHHHGGGSCTTGGGGTSTTSSSSSCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCHHHHHHHCCCCHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf             45775699832898888888718999970989999788357643789999759996881002162012248689999999


Q ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCC
Q ss_conf             99998388578889999999999999998899987433430564189999999999997899755976476336536200
Q gi|254780855|r   83 AVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVH  162 (396)
Q Consensus        83 AiE~a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~  162 (396)
                      |+|+|+|++||++++++|+|++++++||||++|+|.++.+++....+..+++.|++++++++.++|.++|+...++||+.
T Consensus       100 AvE~a~gi~vp~ra~~lR~ll~e~~~i~sHll~~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~~g~~~~~~~~~~ggv~  179 (409)
T 3i9v_4          100 AVEKLLGAVVPPRAETIRVILNELSRLASHLVFLGTGLLDLGALTPFFYAFRERETILDLFEWVTGQRFHHNYIRIGGVK  179 (409)
T ss_dssp             HHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHSSSSSCCCBCSSBBS
T ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCEE
T ss_conf             99998299788789999999999999999999871236313561588889999999999999860763110331224430


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCC
Q ss_conf             07898999999999999999999999998448333442122112303333102356651013676010210175443346
Q gi|254780855|r  163 QDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE  242 (396)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~G~~~~~~g~~~~~r~~~~~~~~~~  242 (396)
                      ..++......+...++.......+..+++...+.+..+....|..........+..|+..++++++++.++..||..+..
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~g~~~~~~a~~~g~~~~~~~~~~v~~d~~~~~p~~~~~~  259 (409)
T 3i9v_4          180 EDLPEEFVPELKKLLEVLPHRIDEYEALFAESPIFYERARGVGVIPPEVAIDLGLTGGSLRASGVNYDVRKAYPYSGYET  259 (409)
T ss_dssp             SCCCTTHHHHHHHHHHHHHHHHHHHHHHHHSCTTHHHHHSSSSCBCHHHHHHHTCCSSSSGGGTCCCCHHHHSCCSSGGG
T ss_pred             ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             36871677999999999999999999987508366763288600037889854877654566530343322366434566


Q ss_pred             CCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             77540010123201221100011687589999999621035786720111123030448999975675430575557776
Q gi|254780855|r  243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGY  322 (396)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~  322 (396)
                      .++...+...++.+++...+..+..+|..+..+...+.+....    ..............+....+.+........+..
T Consensus       260 ~~~~~~~~~~Gd~~~~~~v~~~~~~~s~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (409)
T 3i9v_4          260 YTFDVPLGERGDVFDRMLVRIREMRESVKIIKQALERLEPGPV----RDPNPQITPPPRHLLETSMEAVIYHFKHYTEGF  335 (409)
T ss_dssp             SCCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCC----BCCCTTTSCCCGGGGGTCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC----CCCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             6766677558862112122355555556778999975778761----000023130679999986664331354566677


Q ss_pred             CCCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf             15897489999889511799999879980889998358756868899997088057599989760912055359
Q gi|254780855|r  323 HVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR  396 (396)
Q Consensus       323 ~~~~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT~~N~~~~e~al~G~~i~D~~~iirSfDpC~sC~dr  396 (396)
                      ++|+|+|+|+||||||+|+|||++|++|+|++||||+||+||++++|++|+|++++|++++|||||||+|||||
T Consensus       336 ~~p~Geg~g~vEAPRG~L~H~~~~d~~G~i~~~~ii~PT~~N~~~le~al~G~~i~D~~~iirS~DpC~sc~dr  409 (409)
T 3i9v_4          336 HPPKGEVYVPTESARGELGYYIVSDGGSMPYRVKVRAPSFVNLQSLPYACKGEQVPDMVAIIASLDPVMGDVDR  409 (409)
T ss_dssp             CCCSEEEECCEEETTEEEEEEEEECSSSSCSEEEEECHHHHTTTTTTTTTSSSCSGGGTHHHHTTCCCHHHHHC
T ss_pred             CCCCCEEEEEEECCCEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf             58986799999858710899999979984999999898888999999997799178999998525975237789