HHsearch results for GI: 254780855 and protein with PDBid: 3myr_B

>3myr_B Nickel-dependent hydrogenase large subunit; [NIFE] hydrogenase, photosynthetic P sulfur bacterium, iron-sulfur cluster, NI-A state; HET: SF4; 2.10A {Allochromatium vinosum}
Probab=100.00  E-value=0  Score=562.52  Aligned_cols=380  Identities=17%  Similarity=0.177  Sum_probs=260.5

Q ss_pred             EEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             84068686667755999998399899999880411578898740989878554431212344888999999999998388
Q gi|254780855|r   11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGI   90 (396)
Q Consensus        11 ~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~a~gi   90 (396)
                      |.|.|++ ++|||+++++++||++|++|+++ +++|||||+||+||+|+||++||||||||||+||++||++|+|+|+|+
T Consensus         5 I~IdPit-RiEGh~~l~v~~d~g~V~~a~~~-~~~~RGfE~~l~Gr~~~da~~it~RICGIC~~aH~lAs~~AlE~a~Gv   82 (561)
T 3myr_B            5 IVVDPIT-RIEGHLRIEAQMDGATIAQAYSS-GTMVRGIETILKGRDPRDAWAFVQRICGVCTLVHGIASVRAVEDALRI   82 (561)
T ss_dssp             EEECSCC-SSBSCEEEEEEEETTEEEEEEEE-ECBCCCHHHHTTTSCGGGHHHHHHTTCSTTTTHHHHHHHHHHHHHHTC
T ss_pred             EEECCCC-CEECCEEEEEEEECCEEEEEEEC-CCCCCCHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             8968977-20132689999989989899990-577650889857998789999860426568468999999999998499


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-------------------------------------------
Q ss_conf             5788899999999999999988999874334305641-------------------------------------------
Q gi|254780855|r   91 EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT-------------------------------------------  127 (396)
Q Consensus        91 ~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~~-------------------------------------------  127 (396)
                      +||++|++||||++.+|+||||++|||+|+.||+...                                           
T Consensus        83 ~~p~~a~~lR~L~~~~e~iqsH~lh~y~L~~PD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (561)
T 3myr_B           83 ELPLNAQLIRNLMIGAQYIHDHVMHFYHLHALDWVDVVSALSADPRATSELAQSISAWPKSSPGYFADTQKRIKTFVESG  162 (561)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTCCHHHHTTCCHHHHHHHHHHHCCCSBCCHHHHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             88878999999999999998899999987410331354322257177899987621342237267999999999876640


Q ss_pred             ---------------------------HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCH--------HHHHH
Q ss_conf             ---------------------------8999999999999789975597647633653620007898--------99999
Q gi|254780855|r  128 ---------------------------PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP--------ELVED  172 (396)
Q Consensus       128 ---------------------------~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~~~~--------~~~~~  172 (396)
                                                 +|.+++++++.++++++++|||+|||+++ +||+++.++.        +.+.+
T Consensus       163 ~l~~~~~g~~~h~~~~~~~~~~~~~~~~~~~al~~~~~~~ei~~l~gGr~~Hp~~~-vgG~~~~~~~~~~~~~~~~~l~~  241 (561)
T 3myr_B          163 QLGIFANGYWGHPAYRLPPEANLMAVAHYLEALAWQRDTAKFHAIFGGKNPHPNFV-VGGVPSPIDLDSDSALNAKRLAE  241 (561)
T ss_dssp             CCGGGTTCCTTCTTCCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSSSSSCCCB-TTBCSCCBCTTCTTSBCHHHHHH
T ss_pred             HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE-ECCCCCCCCCHHHHHHHHHHHHH
T ss_conf             22000477678830127811222236779999999999999999653744453204-77773346510056778999999


Q ss_pred             HHHHHHHHHHHHHHHH--HHH---HCCHHHHHHHCCEEEECCC----------CCCCCCCCCCCCCCCCCCC--------
Q ss_conf             9999999999999999--998---4483334421221123033----------3310235665101367601--------
Q gi|254780855|r  173 IGCWCDSFPSALNDIS--DLL---TGNRIFKQRNVNIGTVKLE----------DAWGWGFSGVMIRGSGAAW--------  229 (396)
Q Consensus       173 ~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~g~~~~~----------~~~~~~~~G~~~~~~g~~~--------  229 (396)
                      +...++....+.....  +.+   .....+.......+.+...          ........|.+........        
T Consensus       242 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~d~~~~  321 (561)
T 3myr_B          242 VRNLIQSMRTFVDQVYVPDTLAIAGFYKDWGERGEGLGNFLCYGDLPTGASLDPATFLFPRGAILDRDLSTIHEVDLEAT  321 (561)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHTTCGGGGSSSCCCCCEEECCEEESSSSCCGGGEEECCEEECTTCTTCCBCCCSSCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCC
T ss_conf             99999999999996330569999988788886365756541233565655568763212686265076433343443454


Q ss_pred             -HHHHCCCCCCCC----------------CCC----------CCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHC-
Q ss_conf             -021017544334----------------677----------5400101232012211000116875899999996210-
Q gi|254780855|r  230 -DLRKSQPYECYS----------------ELD----------FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL-  281 (396)
Q Consensus       230 -~~r~~~~~~~~~----------------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-  281 (396)
                       ...++.++++|+                ...          +.......+++|++.+.+....+++++++|..+.+.. 
T Consensus       322 ~~i~E~v~~s~y~~~~~~~~~~~p~~g~t~~~~~~~~~~~~~~~~~~~~~~yS~~K~pry~g~~~evGPLARl~~~~~~~  401 (561)
T 3myr_B          322 GEIQEFVNHSWYEYSVGNDRGLHPYEGQTNLEYDRRGGVAPPYKQLDVSDGYSWLKAPRWKGRSVEVGPLARVLMLYATG  401 (561)
T ss_dssp             TTEEEECTTSSBCCTTCTTSCBCGGGCCCCBCSTTTTCCCSSCSSCCTTSCCCSSCEEEETTBCCBCSHHHHHHHHHHTT
T ss_pred             CCEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC
T ss_conf             44378447201120257766668878745556664557678743455335676102544589850138499999886028


Q ss_pred             ------------C------CCCCCCCCCCCHHHCCH--HHHHHHHHHHHHHCC----CCC------CCCCCCCCCCCEEE
Q ss_conf             ------------3------57867201111230304--489999756754305----755------57776158974899
Q gi|254780855|r  282 ------------G------KNKVGPVSASDPKIVPP--KRADMKRSMESLIHH----FKL------YTEGYHVPVGEVYA  331 (396)
Q Consensus       282 ------------~------~~~~~~~~~~~~~~~~~--~~~~~~~~~e~l~~~----~~~------~~~~~~~~~G~GvG  331 (396)
                                  .      ......+.+++++++..  ....+.++++.+...    ...      ..+...+.+|+|+|
T Consensus       402 ~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~AR~~E~~~~~~~~~~~l~~l~~~~~~~d~~~~~~~~~~~~~~p~~g~GvG  481 (561)
T 3myr_B          402 HDQARELVDSTLSRLDLPVDALYSTLGRTAARALESKILVDAMQGWYDGLIANVKSGDTKTFNETLWEPSSWPSRAQGVG  481 (561)
T ss_dssp             CHHHHHHHHHHHHHHTCCGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCBCCTTCSGGGSCSEEEEEE
T ss_pred             CHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf             87899999999875178854221569999999998999999999999999765323885334655567768987527999


Q ss_pred             EEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHH---------HHHHHHCCCC-CCH------HHHHHHHCCCCCCCC
Q ss_conf             99889511799999879980889998358756868---------8999970880-575------999897609120553
Q gi|254780855|r  332 AVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQ-LAD------VSAILGSLDIVFGEV  394 (396)
Q Consensus       332 ~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT~~N~~---------~~e~al~G~~-i~D------~~~iirSfDpC~sC~  394 (396)
                      +||||||+|+||++++ ||+|++||||+|||||++         ++|++|+|++ +.|      ++++|||||||+||+
T Consensus       482 ~vEAPRG~L~H~~~ie-~G~I~~y~iI~PTt~N~~p~d~~~~~g~~e~al~g~~~~~~~~~~ve~~~vIRsfDPClsCa  559 (561)
T 3myr_B          482 IMEAPRGALGHWIVIE-DGRIANYQAVVPSTWNAGPRDGRGQAGAYEAALQDNHQLVDVKQPIEILRTIHSFDPCIACA  559 (561)
T ss_dssp             EEEETTEEEEEEEEEE-TTEEEEEEEECHHHHHHCCCCTTCCCCHHHHHHHSSCBCSCTTSCHHHHHHHHHTCCBHHHH
T ss_pred             EEECCCCCCEEEEEEC-CCEEEEEEEECCCCCCHHHCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCHH
T ss_conf             9887874616799987-99897878989873211122766663499998548876778532688877762588850000