HHsearch results for GI: 254780855 and protein with PDBid: 3myr_B
>3myr_B Nickel-dependent hydrogenase large subunit; [NIFE] hydrogenase, photosynthetic P sulfur bacterium, iron-sulfur cluster, NI-A state; HET: SF4; 2.10A {Allochromatium vinosum}
Probab=100.00 E-value=0 Score=562.52 Aligned_cols=380 Identities=17% Similarity=0.177 Sum_probs=260.5
Q ss_pred EEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 84068686667755999998399899999880411578898740989878554431212344888999999999998388
Q gi|254780855|r 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGI 90 (396)
Q Consensus 11 ~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~a~gi 90 (396)
|.|.|++ ++|||+++++++||++|++|+++ +++|||||+||+||+|+||++||||||||||+||++||++|+|+|+|+
T Consensus 5 I~IdPit-RiEGh~~l~v~~d~g~V~~a~~~-~~~~RGfE~~l~Gr~~~da~~it~RICGIC~~aH~lAs~~AlE~a~Gv 82 (561)
T 3myr_B 5 IVVDPIT-RIEGHLRIEAQMDGATIAQAYSS-GTMVRGIETILKGRDPRDAWAFVQRICGVCTLVHGIASVRAVEDALRI 82 (561)
T ss_dssp EEECSCC-SSBSCEEEEEEEETTEEEEEEEE-ECBCCCHHHHTTTSCGGGHHHHHHTTCSTTTTHHHHHHHHHHHHHHTC
T ss_pred EEECCCC-CEECCEEEEEEEECCEEEEEEEC-CCCCCCHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 8968977-20132689999989989899990-577650889857998789999860426568468999999999998499
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-------------------------------------------
Q ss_conf 5788899999999999999988999874334305641-------------------------------------------
Q gi|254780855|r 91 EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT------------------------------------------- 127 (396)
Q Consensus 91 ~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~~------------------------------------------- 127 (396)
+||++|++||||++.+|+||||++|||+|+.||+...
T Consensus 83 ~~p~~a~~lR~L~~~~e~iqsH~lh~y~L~~PD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (561)
T 3myr_B 83 ELPLNAQLIRNLMIGAQYIHDHVMHFYHLHALDWVDVVSALSADPRATSELAQSISAWPKSSPGYFADTQKRIKTFVESG 162 (561)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTCCHHHHTTCCHHHHHHHHHHHCCCSBCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 88878999999999999998899999987410331354322257177899987621342237267999999999876640
Q ss_pred ---------------------------HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCH--------HHHHH
Q ss_conf ---------------------------8999999999999789975597647633653620007898--------99999
Q gi|254780855|r 128 ---------------------------PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP--------ELVED 172 (396)
Q Consensus 128 ---------------------------~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~~~~--------~~~~~ 172 (396)
+|.+++++++.++++++++|||+|||+++ +||+++.++. +.+.+
T Consensus 163 ~l~~~~~g~~~h~~~~~~~~~~~~~~~~~~~al~~~~~~~ei~~l~gGr~~Hp~~~-vgG~~~~~~~~~~~~~~~~~l~~ 241 (561)
T 3myr_B 163 QLGIFANGYWGHPAYRLPPEANLMAVAHYLEALAWQRDTAKFHAIFGGKNPHPNFV-VGGVPSPIDLDSDSALNAKRLAE 241 (561)
T ss_dssp CCGGGTTCCTTCTTCCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSSSSSCCCB-TTBCSCCBCTTCTTSBCHHHHHH
T ss_pred HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE-ECCCCCCCCCHHHHHHHHHHHHH
T ss_conf 22000477678830127811222236779999999999999999653744453204-77773346510056778999999
Q ss_pred HHHHHHHHHHHHHHHH--HHH---HCCHHHHHHHCCEEEECCC----------CCCCCCCCCCCCCCCCCCC--------
Q ss_conf 9999999999999999--998---4483334421221123033----------3310235665101367601--------
Q gi|254780855|r 173 IGCWCDSFPSALNDIS--DLL---TGNRIFKQRNVNIGTVKLE----------DAWGWGFSGVMIRGSGAAW-------- 229 (396)
Q Consensus 173 ~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~g~~~~~----------~~~~~~~~G~~~~~~g~~~-------- 229 (396)
+...++....+..... +.+ .....+.......+.+... ........|.+........
T Consensus 242 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~d~~~~ 321 (561)
T 3myr_B 242 VRNLIQSMRTFVDQVYVPDTLAIAGFYKDWGERGEGLGNFLCYGDLPTGASLDPATFLFPRGAILDRDLSTIHEVDLEAT 321 (561)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHTTCGGGGSSSCCCCCEEECCEEESSSSCCGGGEEECCEEECTTCTTCCBCCCSSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCC
T ss_conf 99999999999996330569999988788886365756541233565655568763212686265076433343443454
Q ss_pred -HHHHCCCCCCCC----------------CCC----------CCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHC-
Q ss_conf -021017544334----------------677----------5400101232012211000116875899999996210-
Q gi|254780855|r 230 -DLRKSQPYECYS----------------ELD----------FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL- 281 (396)
Q Consensus 230 -~~r~~~~~~~~~----------------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~- 281 (396)
...++.++++|+ ... +.......+++|++.+.+....+++++++|..+.+..
T Consensus 322 ~~i~E~v~~s~y~~~~~~~~~~~p~~g~t~~~~~~~~~~~~~~~~~~~~~~yS~~K~pry~g~~~evGPLARl~~~~~~~ 401 (561)
T 3myr_B 322 GEIQEFVNHSWYEYSVGNDRGLHPYEGQTNLEYDRRGGVAPPYKQLDVSDGYSWLKAPRWKGRSVEVGPLARVLMLYATG 401 (561)
T ss_dssp TTEEEECTTSSBCCTTCTTSCBCGGGCCCCBCSTTTTCCCSSCSSCCTTSCCCSSCEEEETTBCCBCSHHHHHHHHHHTT
T ss_pred CCEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC
T ss_conf 44378447201120257766668878745556664557678743455335676102544589850138499999886028
Q ss_pred ------------C------CCCCCCCCCCCHHHCCH--HHHHHHHHHHHHHCC----CCC------CCCCCCCCCCCEEE
Q ss_conf ------------3------57867201111230304--489999756754305----755------57776158974899
Q gi|254780855|r 282 ------------G------KNKVGPVSASDPKIVPP--KRADMKRSMESLIHH----FKL------YTEGYHVPVGEVYA 331 (396)
Q Consensus 282 ------------~------~~~~~~~~~~~~~~~~~--~~~~~~~~~e~l~~~----~~~------~~~~~~~~~G~GvG 331 (396)
. ......+.+++++++.. ....+.++++.+... ... ..+...+.+|+|+|
T Consensus 402 ~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~AR~~E~~~~~~~~~~~l~~l~~~~~~~d~~~~~~~~~~~~~~p~~g~GvG 481 (561)
T 3myr_B 402 HDQARELVDSTLSRLDLPVDALYSTLGRTAARALESKILVDAMQGWYDGLIANVKSGDTKTFNETLWEPSSWPSRAQGVG 481 (561)
T ss_dssp CHHHHHHHHHHHHHHTCCGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCBCCTTCSGGGSCSEEEEEE
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 87899999999875178854221569999999998999999999999999765323885334655567768987527999
Q ss_pred EEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHH---------HHHHHHCCCC-CCH------HHHHHHHCCCCCCCC
Q ss_conf 99889511799999879980889998358756868---------8999970880-575------999897609120553
Q gi|254780855|r 332 AVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQ-LAD------VSAILGSLDIVFGEV 394 (396)
Q Consensus 332 ~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT~~N~~---------~~e~al~G~~-i~D------~~~iirSfDpC~sC~ 394 (396)
+||||||+|+||++++ ||+|++||||+|||||++ ++|++|+|++ +.| ++++|||||||+||+
T Consensus 482 ~vEAPRG~L~H~~~ie-~G~I~~y~iI~PTt~N~~p~d~~~~~g~~e~al~g~~~~~~~~~~ve~~~vIRsfDPClsCa 559 (561)
T 3myr_B 482 IMEAPRGALGHWIVIE-DGRIANYQAVVPSTWNAGPRDGRGQAGAYEAALQDNHQLVDVKQPIEILRTIHSFDPCIACA 559 (561)
T ss_dssp EEEETTEEEEEEEEEE-TTEEEEEEEECHHHHHHCCCCTTCCCCHHHHHHHSSCBCSCTTSCHHHHHHHHHTCCBHHHH
T ss_pred EEECCCCCCEEEEEEC-CCEEEEEEEECCCCCCHHHCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCHH
T ss_conf 9887874616799987-99897878989873211122766663499998548876778532688877762588850000