HHSEARCH alignment of GI: 254780855 and SCOP domain: d1cc1l_

Alignment
>d1cc1l_ e.18.1.1 (L:) Nickel-iron hydrogenase, large subunit {Desulfomicrobium baculatum [TaxId: 899]}
Probab=100.00  E-value=0  Score=586.39  Aligned_cols=383  Identities=17%  Similarity=0.137  Sum_probs=293.4

Q ss_pred             EEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99840686866677559999983998999998804115788987409898785544312123448889999999999983
Q gi|254780855|r    9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLL   88 (396)
Q Consensus         9 ~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~a~   88 (396)
                      ++|.++|++ ++|||+++++++|||+|++|+++ +++|||||+||+||+|+|++.||+|||||||++|++|+++|+|+|+
T Consensus         1 ~kI~IdPvt-RiEGh~~l~v~vd~g~V~~a~~~-~~~~RGfEk~l~Gr~~~d~~~i~~RICGiC~~aH~lA~~~AvE~a~   78 (487)
T d1cc1l_           1 VKISIDPLT-RVEGHLKIEVEVKDGKVVDAKCS-GGMFRGFEQILRGRDPRDSSQIVQRICGVCPTAHCTASVMAQDDAF   78 (487)
T ss_dssp             CEEEESSCC-SSBSCEEEEEEEETTEEEEEEEE-ECBCCCHHHHTTTSCGGGHHHHGGGGCSSSHHHHHHHHHHHHHHHH
T ss_pred             CEEEECCCC-EEEEEEEEEEEECCCEEEEEEEC-CCCCCHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf             937968856-37536899999849989999981-3214269999779998898888504211358689999999999980


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------------------------HHHHHHH
Q ss_conf             88578889999999999999998899987433430564-----------------------------------1899999
Q gi|254780855|r   89 GIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL-----------------------------------TPPLWGF  133 (396)
Q Consensus        89 gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~-----------------------------------~~~~~~~  133 (396)
                      ||+||++|+++|+|++++|+||||++|||+|+.+++..                                   ..+.+++
T Consensus        79 gi~vp~~a~~lR~l~~~~e~i~sH~lh~~~l~~pD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al  158 (487)
T d1cc1l_          79 GVKVTTNGRITRNLIFGANYLQSHILHFYHLAALDYVKGPDVSPFVPRYANADLLTDRIKDGAKADATNTYGLNQYLKAL  158 (487)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTSCCCSSTTSCSCCTTCCCHHHHCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf             99889789999999999999999898898750203215644340000000046677776512332012346779999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HCCHHH-H---------HHHC
Q ss_conf             9999999789975597647633653620007898999999999999999999999998-448333-4---------4212
Q gi|254780855|r  134 EEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLL-TGNRIF-K---------QRNV  202 (396)
Q Consensus       134 ~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~---------~~~~  202 (396)
                      ++|+.++++++++||+++||++++|||++++++.+.+.++...++...+++....... .....+ .         ....
T Consensus       159 ~~r~~~~~i~~~~gG~~~h~~~~~pGGv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (487)
T d1cc1l_         159 EIRRICHEMVAMFGGRMPHVQGMVVGGATEIPTADKVAEYAARFKEVQKFVIEEYLPLIYTLGSVYTDLFETGIGWKNVI  238 (487)
T ss_dssp             HHHHHHHHHHHHHHSSSSSCSSEETTEESSCCCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGGSSCCCCCCEE
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf             99999999999974998676864368747789999999999999999999997658999999987555654277732136


Q ss_pred             CEEEECCCCC--CCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCC--------------CEEECCCCCHHHHHCCCHHH
Q ss_conf             2112303333--1023566510136760102101754433467754--------------00101232012211000116
Q gi|254780855|r  203 NIGTVKLEDA--WGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD--------------IPIGKHGDCYDRYLVRMMEM  266 (396)
Q Consensus       203 ~~g~~~~~~~--~~~~~~G~~~~~~g~~~~~r~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~  266 (396)
                      ..|.+.....  ......|....+++..+|.+...+|..+...++.              ......+++|.+.+.+....
T Consensus       239 ~~g~~~~~~~~~~~~~~~g~~~~g~~~~~D~~~i~e~~~~~~~~~~~~~~~~~~~~~t~p~~~~~~~ys~~k~p~y~~~~  318 (487)
T d1cc1l_         239 AFGVFPEDDDYKTFLLKPGVYIDGKDEEFDSKLVKEYVGHSFFDHSAPGGLHYSVGETNPNPDKPGAYSFVKAPRYKDKP  318 (487)
T ss_dssp             ECCEEESSTTSCCEEECCEEEETTEEECCCGGGEEEECTTBTBCCSSSSCEEGGGCCCCBCTTCTTCCBSCCEEEETTBC
T ss_pred             EEECCCCCCCHHHHCCCCCEEECCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCCEECCCCCCCCCCCHHCCCCCCCCC
T ss_conf             73022465434553247814765976044476640146603553367665575344111346765433100262017862


Q ss_pred             HHHHHHHHHHHHHHC-------------CCC----------CCCCCCCCCHHHCC--HHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             875899999996210-------------357----------86720111123030--44899997567543057555777
Q gi|254780855|r  267 RESVKIIRQCVNRLL-------------GKN----------KVGPVSASDPKIVP--PKRADMKRSMESLIHHFKLYTEG  321 (396)
Q Consensus       267 ~~s~~~~~~~~~~~~-------------~~~----------~~~~~~~~~~~~~~--~~~~~~~~~~e~l~~~~~~~~~~  321 (396)
                      +++++++|..+....             ...          .........++...  .+...+.++++.+..........
T Consensus       319 ~evGPlAR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~aR~~E~~~~~~~i~~~l~~~~~~~~~~~~~  398 (487)
T d1cc1l_         319 CEVGPLARMWVQNPELSPVGQKLLKELYGIEAKKFRDLGDKAFSIMGRHVLRAEETWLTAVAVEKWLKQVQPGAETYVKS  398 (487)
T ss_dssp             CBCSHHHHHHHHCCBCCHHHHHHHHHHHCCCCSBGGGGGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCCCBCCC
T ss_pred             CCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             00379899986502127147999988643122321567764358699999999999999999999987378999744578


Q ss_pred             CCCCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHH---------HHHHHHCCCCCCH------HHHHHHH
Q ss_conf             615897489999889511799999879980889998358756868---------8999970880575------9998976
Q gi|254780855|r  322 YHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLAD------VSAILGS  386 (396)
Q Consensus       322 ~~~~~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT~~N~~---------~~e~al~G~~i~D------~~~iirS  386 (396)
                      ..+++|+|+|+||||||+|+|||+++ ||+|++||||+||+||++         ++|++|.|++++|      ++++|||
T Consensus       399 ~~p~~g~GvG~vEApRG~L~H~~~i~-~g~i~~~~ii~PT~~N~~p~~~~~~~~~~e~~l~g~~v~d~~~~~~~~~iirs  477 (487)
T d1cc1l_         399 EIPDAAEGTGFTEAPRGALLHYLKIK-DKKIENYQIVSATLWNANPRDDMGQRGPIEEALIGVPVPDIKNPVNVGRLVRS  477 (487)
T ss_dssp             CCCSSEEEEEEEEETTEEEEEEEEEE-TTEEEEEEEEETHHHHSCCCCTTCCCCHHHHHHTTCBCSCTTSCHHHHHHHHH
T ss_pred             CCCCCCEEEEEEECCCHHEEEEEEEE-CCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHC
T ss_conf             99999489999988970269999997-99898989988873235433422353399998479987785215679889731


Q ss_pred             CCCCCCCC
Q ss_conf             09120553
Q gi|254780855|r  387 LDIVFGEV  394 (396)
Q Consensus       387 fDpC~sC~  394 (396)
                      ||||+||+
T Consensus       478 ~DPCisCa  485 (487)
T d1cc1l_         478 YDPCLGCA  485 (487)
T ss_dssp             TCCBHHHH
T ss_pred             CCCCCCCC
T ss_conf             88651531


SCOP domain information

class: Multi-domain proteins (alpha and beta)
fold: HydB/Nqo4-like
superfamily: HydB/Nqo4-like
family: Nickel-iron hydrogenase, large subunit
domain: Nickel-iron hydrogenase, large subunit
species: Desulfomicrobium baculatum [TaxId: 899]