HHSEARCH alignment of GI: 254780855 and SCOP domain: d1wuil1

Alignment
>d1wuil1 e.18.1.1 (L:19-552) Nickel-iron hydrogenase, large subunit {Desulfovibrio vulgaris [TaxId: 881]}
Probab=100.00  E-value=0  Score=579.72  Aligned_cols=386  Identities=15%  Similarity=0.104  Sum_probs=287.9

Q ss_pred             CCEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             61599840686866677559999983998999998804115788987409898785544312123448889999999999
Q gi|254780855|r    6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVE   85 (396)
Q Consensus         6 ~~~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE   85 (396)
                      +.|-.|.|+|+. ++|||+++++++|||+|++|++. |++|||||+||+||+|+|++.||+|||||||++|++|+++|+|
T Consensus         2 ~~~~~i~IdPit-RiEG~~~l~l~~d~g~V~~a~~~-~~~~RGfEk~l~gr~~~d~~~it~RICGiC~~aH~~a~~~AvE   79 (534)
T d1wuil1           2 SYSGPIVVDPVT-RIEGHLRIEVEVENGKVKNAYSS-STLFRGLEIILKGRDPRDAQHFTQRTCGVCTYTHALASTRCVD   79 (534)
T ss_dssp             CCCEEEEESSCC-SSBSCEEEEEEEETTEEEEEEEE-ECBCCCHHHHHTTSCGGGHHHHHHTTCSSSTTHHHHHHHHHHH
T ss_pred             CCCCCEEECCCC-EEEEEEEEEEEEECCEEEEEEEC-CCCCCHHHHHHCCCCHHHHHHHHCCCEEECHHHHHHHHHHHHH
T ss_conf             856647977856-26545899999839989999982-4566319898679997896655341003178689999999999


Q ss_pred             HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------------------------------------
Q ss_conf             98388578889999999999999998899987433430564---------------------------------------
Q gi|254780855|r   86 KLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL---------------------------------------  126 (396)
Q Consensus        86 ~a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~---------------------------------------  126 (396)
                      +|+||+||++|++||+|++++|+||||++|||+|+.+++..                                       
T Consensus        80 ~a~Gi~vP~~a~~lR~L~~~~e~I~sH~l~~~~l~~pD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  159 (534)
T d1wuil1          80 NAVGVHIPKNATYIRNLVLGAQYLHDHIVHFYHLHALDFVDVTAALKADPAKAAKVASSISPRKTTAADLKAVQDKLKTF  159 (534)
T ss_dssp             HHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTCCTGGGGGCCHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHH
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             99399879889999999999999999999999874530024532333575779998753165323426799988999888


Q ss_pred             --------------------------------HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCC--CHHHHHH
Q ss_conf             --------------------------------189999999999997899755976476336536200078--9899999
Q gi|254780855|r  127 --------------------------------TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDI--PPELVED  172 (396)
Q Consensus       127 --------------------------------~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~~--~~~~~~~  172 (396)
                                                      .++.+++++|+.++++++++||+++||++++|||+++.+  +...++.
T Consensus       160 ~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~i~~~~~G~~~h~~~~~pGGv~~~~~~~~~~~~~  239 (534)
T d1wuil1         160 VETGQLGPFTNAYFLGGHPAYYLDPETNLIATAHYLEALRLQVKAARAMAVFGAKNPHTQFTVVGGVTCYDALTPQRIAE  239 (534)
T ss_dssp             HHTTCCGGGTTCTTTTCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSSCCCEETTEECCGGGGSHHHHHH
T ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHH
T ss_conf             76411477665434578751346701011356789999999999999999982887444521026522578899899999


Q ss_pred             HHHHHHHHHHHHHHHHHHH-----HCCHHHH----------------------HHHCCEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             9999999999999999998-----4483334----------------------421221123033331023566510136
Q gi|254780855|r  173 IGCWCDSFPSALNDISDLL-----TGNRIFK----------------------QRNVNIGTVKLEDAWGWGFSGVMIRGS  225 (396)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~----------------------~~~~~~g~~~~~~~~~~~~~G~~~~~~  225 (396)
                      +...++....+.....+..     ..+..+.                      .++...|.............++....+
T Consensus       240 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~G~~~~~~~~~~~~~d~~~i~e  319 (534)
T d1wuil1         240 FEALWKETKAFVDEVYIPDLLVVAAAYKDWTQYGGTDNFITFGEFPKDEYDLNSRFFKPGVVFKRDFKNIKPFDKMQIEE  319 (534)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHHHTGGGGGSCCCSCEEEEEEEESSTTCGGGEEEEEEEESTTCTTSCBCCCGGGEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCCCCCCCCCHHHCEECCCEEECCCCCEECCCCHHHHEE
T ss_conf             99999999999999888899998775401565178644120100456555301121037568868765112457256101


Q ss_pred             CCCCHHH----HCCCCCCCCCCCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCC--------------C---
Q ss_conf             7601021----017544334677540010123201221100011687589999999621035--------------7---
Q gi|254780855|r  226 GAAWDLR----KSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGK--------------N---  284 (396)
Q Consensus       226 g~~~~~r----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~--------------~---  284 (396)
                      ++..+..    ..+||.......+.......+++|++.+.+....++.++++|.........              .   
T Consensus       320 ~v~~s~y~~~~~~~P~~~~t~p~~~~~~~~~~ysw~kapry~g~~~evGPlAR~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (534)
T d1wuil1         320 HVRHSWYEGAEARHPWKGQTQPKYTDLHGDDRYSWMKAPRYMGEPMETGPLAQVLIAYSQGHPKVKAVTDAVLAKLGVGP  399 (534)
T ss_dssp             ECTTBTBSSSCCBCGGGCCCCBCCCCTTBTTBCBSSCEEEETTBCCBCSHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCG
T ss_pred             CCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC
T ss_conf             47188744775457666777766333465555323115522785303028899986655338211678787898529886


Q ss_pred             --CCCCCCCCCHHHCC--HHHHHHHHHHHHHHCC----CCCCCCCC-CCCCCCEEEEEECCCCEEEEEEEECCCCCEEEE
Q ss_conf             --86720111123030--4489999756754305----75557776-158974899998895117999998799808899
Q gi|254780855|r  285 --KVGPVSASDPKIVP--PKRADMKRSMESLIHH----FKLYTEGY-HVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRC  355 (396)
Q Consensus       285 --~~~~~~~~~~~~~~--~~~~~~~~~~e~l~~~----~~~~~~~~-~~~~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~  355 (396)
                        .........+++.+  .+...++++++.+...    ...+..+. .+++|+|+|++|||||+|+||++++ ||+|++|
T Consensus       400 ~~~~~~~~R~~aR~~E~~~s~~~~~~~l~~l~~~~~~~~~~~~~p~~~p~~GeG~g~vEApRG~L~H~~~i~-~G~I~~y  478 (534)
T d1wuil1         400 EALFSTLGRTAARGIETAVIAEYVGVMLQEYKDNIAKGDNVICAPWEMPKQAEGVGFVNAPRGGLSHWIRIE-DGKIGNF  478 (534)
T ss_dssp             GGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCBCCCCCCSSEEEEEEEEETTEEEEEEEEEE-TTEEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEE-CCEEEEE
T ss_conf             556888999999999999999999999997464034578640278779997189999988874289999980-9989898


Q ss_pred             EEECCCCCCHH---------HHHHHHCCCCCCH------HHHHHHHCCCCCCCC
Q ss_conf             98358756868---------8999970880575------999897609120553
Q gi|254780855|r  356 KIRAPGYAHLQ---------AMEFLCKGHQLAD------VSAILGSLDIVFGEV  394 (396)
Q Consensus       356 ~ii~PT~~N~~---------~~e~al~G~~i~D------~~~iirSfDpC~sC~  394 (396)
                      |||+||+||++         ++|++|+|++++|      ++++|||||||+||+
T Consensus       479 ~ii~PT~~N~~p~~~~~~~~~~e~~l~g~~v~d~~~~~~i~~~iRsfDPCisCa  532 (534)
T d1wuil1         479 QLVVPSTWTLGPRCDKNKLSPVEASLIGTPVADAKRPVEILRTVHSFDPCIACG  532 (534)
T ss_dssp             EEECHHHHHHCCCCTTCCCCHHHHHHTTCBCSCTTSCHHHHHHHHHTCCBHHHH
T ss_pred             EEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCC
T ss_conf             897977010553332455449999827998788630665656640057861532


SCOP domain information

class: Multi-domain proteins (alpha and beta)
fold: HydB/Nqo4-like
superfamily: HydB/Nqo4-like
family: Nickel-iron hydrogenase, large subunit
domain: Nickel-iron hydrogenase, large subunit
species: Desulfovibrio vulgaris [TaxId: 881]