Query gi|254780855|ref|YP_003065268.1| NADH dehydrogenase subunit D [Candidatus Liberibacter asiaticus str. psy62] Match_columns 396 No_of_seqs 127 out of 1943 Neff 9.2 Searched_HMMs 13730 Date Wed Jun 1 10:33:22 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780855.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2fug41 e.18.1.2 (4:35-409) NA 100.0 0 0 643.1 13.5 375 18-396 1-375 (375) 2 d1yq9h1 e.18.1.1 (H:7-536) Nic 100.0 0 0 590.1 29.7 382 10-394 2-528 (530) 3 d1cc1l_ e.18.1.1 (L:) Nickel-i 100.0 0 0 586.4 31.1 383 9-394 1-485 (487) 4 d1frfl_ e.18.1.1 (L:) Nickel-i 100.0 0 0 585.9 30.9 385 7-394 6-541 (543) 5 d1wuil1 e.18.1.1 (L:19-552) Ni 100.0 0 0 579.7 31.9 386 6-394 2-532 (534) 6 d1e3db_ e.18.1.1 (B:) Nickel-i 100.0 0 0 570.2 32.4 384 7-394 6-535 (537) 7 d1ffvc1 d.87.2.1 (C:178-287) C 76.9 1.8 0.00013 19.2 6.1 35 26-60 23-63 (110) 8 d1vqza1 d.224.1.3 (A:242-329) 74.7 1.6 0.00011 19.6 3.8 49 22-71 16-68 (88) 9 d1t3qc1 d.87.2.1 (C:177-285) Q 64.0 3.4 0.00025 17.3 4.5 36 26-61 21-62 (109) 10 d1v97a4 d.87.2.1 (A:415-528) X 62.9 3.6 0.00026 17.1 6.1 36 26-61 24-67 (114) 11 d1xjsa_ d.224.1.2 (A:) NifU {B 61.2 3.3 0.00024 17.4 3.1 51 23-101 44-94 (147) 12 d1jroa3 d.87.2.1 (A:346-462) X 54.9 4.9 0.00035 16.2 4.6 38 25-62 22-65 (117) 13 d1n62c1 d.87.2.1 (C:178-286) C 53.1 5.2 0.00038 16.0 6.9 35 26-60 23-63 (109) 14 d1x2ga1 d.224.1.3 (A:247-337) 47.2 6.3 0.00046 15.4 7.2 65 22-104 16-84 (91) 15 d1rm6b1 d.87.2.1 (B:217-323) 4 42.6 6 0.00044 15.6 2.0 37 24-60 22-62 (107) 16 d1ufia_ a.30.4.1 (A:) Dimerisa 38.6 6.5 0.00048 15.3 1.7 13 106-118 27-39 (48) 17 d1wfza_ d.224.1.2 (A:) Iron-su 37.9 8.7 0.00063 14.4 4.2 41 22-66 35-86 (130) 18 d1su0b_ d.224.1.2 (B:) IscU ho 36.6 9.1 0.00066 14.3 4.6 52 23-102 38-89 (136) 19 d1r9pa_ d.224.1.2 (A:) NifU-li 35.8 9.4 0.00068 14.2 4.1 39 23-65 40-89 (134) 20 d1jpma2 d.54.1.1 (A:1-125) L-A 35.0 9.6 0.0007 14.1 4.3 38 49-88 70-107 (125) 21 d2ntka1 d.153.2.1 (A:1-202) Hy 29.6 6.9 0.0005 15.2 0.6 14 368-381 167-180 (202) 22 d1t8ka_ a.28.1.1 (A:) Acyl car 28.5 12 0.00089 13.4 2.0 57 55-112 16-75 (77) 23 d1u07a_ d.212.1.2 (A:) TonB {E 26.8 13 0.00095 13.2 3.4 27 338-364 25-51 (90) 24 d2chra2 d.54.1.1 (A:1-126) Chl 26.4 13 0.00096 13.2 1.9 38 49-88 71-108 (126) 25 d1o98a1 c.105.1.1 (A:77-310) 2 24.9 14 0.001 13.0 1.5 67 109-175 46-127 (234) 26 d1yeya2 d.54.1.1 (A:2-140) RTS 21.3 16 0.0012 12.5 4.1 47 24-70 34-90 (139) 27 d1ah9a_ b.40.4.5 (A:) Translat 21.0 17 0.0012 12.5 1.4 40 14-55 10-49 (71) No 1 >d2fug41 e.18.1.2 (4:35-409) NADH-quinone oxidoreductase chain 4, Nqo4 {Thermus thermophilus [TaxId: 274]} Probab=100.00 E-value=0 Score=643.13 Aligned_cols=375 Identities=45% Similarity=0.805 Sum_probs=339.1 Q ss_pred CCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH Q ss_conf 66677559999983998999998804115788987409898785544312123448889999999999983885788899 Q gi|254780855|r 18 PAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQ 97 (396) Q Consensus 18 ~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~a~gi~vp~~a~ 97 (396) |..|||+|++++||||+|+||++++|++|||||+||+||+|+|++.||+|||||||+||++|+++|+|+|+|++||++++ T Consensus 1 p~~hG~~r~~~~v~ge~V~~a~~~ig~~~RGfEk~l~Gr~~~da~~i~~RICGIC~~aH~~A~~~AlE~a~gv~~p~~a~ 80 (375) T d2fug41 1 PSTHGVLRLMVTLSGEEVLEVVPHIGYLHTGFEKTMEHRTYLQNITYTPRMDYLHSFAHDLAYALAVEKLLGAVVPPRAE 80 (375) T ss_dssp CEEECSSSCEEEECCSSSCCEEEECCTTCCCHHHHGGGSCHHHHHHHGGGTTSSSHHHHHHHHHHHHHHHTTCCCCHHHH T ss_pred CCCCCEEEEEEEECCCEEEEEEEEECCCCHHHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHH T ss_conf 99885289999976988999898306652689998749996882212063111038799999999999991998899999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHH Q ss_conf 99999999999998899987433430564189999999999997899755976476336536200078989999999999 Q gi|254780855|r 98 LIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWC 177 (396) Q Consensus 98 llR~Ll~~~e~i~sH~~h~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~~~~~~~~~~~~~~ 177 (396) ++|+|++++|+||||++|||+++.+++....+...+++++.++++++.++|+++|+++++|||+++.++...+..+...+ T Consensus 81 ~lR~l~~~~e~i~sH~l~~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~~G~~~h~~~~~~gG~~~~~~~~~~~~~~~~~ 160 (375) T d2fug41 81 TIRVILNELSRLASHLVFLGTGLLDLGALTPFFYAFRERETILDLFEWVTGQRFHHNYIRIGGVKEDLPEEFVPELKKLL 160 (375) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTSSSSSCCCEETTEESSCCCTTHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCEECCCEEECCCHHHHHHHHHHH T ss_conf 99999999988767999999834520024388899999899999999846865520521202302279867889999998 Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCHH Q ss_conf 99999999999998448333442122112303333102356651013676010210175443346775400101232012 Q gi|254780855|r 178 DSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYD 257 (396) Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~G~~~~~~g~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (396) +...+.+.+..+++...+.+..++...+..........+..|+..+.+|.+.+.++..++..+...++...+...+++++ T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 240 (375) T d2fug41 161 EVLPHRIDEYEALFAESPIFYERARGVGVIPPEVAIDLGLTGGSLRASGVNYDVRKAYPYSGYETYTFDVPLGERGDVFD 240 (375) T ss_dssp TTTTTTTHHHHHHHSSCSCCTTSCSCCCCSSSCSTTTTTTCCSSCCSSCCTTTTTCCSSCCCC-----CCCCCCSSSSHH T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 76088778898740367500002577533451023315765554555642133120067554556565534424776432 Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCC Q ss_conf 21100011687589999999621035786720111123030448999975675430575557776158974899998895 Q gi|254780855|r 258 RYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPK 337 (396) Q Consensus 258 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~G~GvG~vEAPR 337 (396) +...+..+..++..+..+...+.................. ..+....+..........+.+++|+|+|+|+||||| T Consensus 241 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~G~g~g~vEApR 316 (375) T d2fug41 241 RMLVRIREMRESVKIIKQALERLEPGPVRDPNPQITPPPR----HLLETSMEAVIYHFKHYTEGFHPPKGEVYVPTESAR 316 (375) T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCCSCCBCCCTTTSCCCT----TCTTTCTTHHHHHHHHHHSCCCCCSCCCCCCBCCSS T ss_pred CCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHCCHHH----HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCC T ss_conf 1021344442146899989974889874434411033569----999755454101344456677689957999997488 Q ss_pred CEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCC Q ss_conf 11799999879980889998358756868899997088057599989760912055359 Q gi|254780855|r 338 GEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396 (396) Q Consensus 338 G~L~H~~~~~~~g~i~~~~ii~PT~~N~~~~e~al~G~~i~D~~~iirSfDpC~sC~dr 396 (396) |+|+|||++|++|+|++||||+||+||++++|++|+|++++|+++++||||||+||||| T Consensus 317 G~L~H~~~~d~~g~i~~~~ii~PT~~N~~~~e~al~G~~i~D~~~iirSfDpC~sC~dr 375 (375) T d2fug41 317 GELGYYIVSDGGSMPYRVKVRAPSFVNLQSLPYACKGEQVPDMVAIIASLDPVMGDVDR 375 (375) T ss_dssp SCBCEEEECCSSSSCSEEEECCSHHHHTTTHHHHTTTSCGGGTTHHHHTTCCCHHHHHC T ss_pred EEEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCC T ss_conf 67999999989981899999898877999999996799167899998567976447898 No 2 >d1yq9h1 e.18.1.1 (H:7-536) Nickel-iron hydrogenase, large subunit {Desulfovibrio gigas [TaxId: 879]} Probab=100.00 E-value=0 Score=590.06 Aligned_cols=382 Identities=16% Similarity=0.130 Sum_probs=306.3 Q ss_pred EEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 98406868666775599999839989999988041157889874098987855443121234488899999999999838 Q gi|254780855|r 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLG 89 (396) Q Consensus 10 ~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~a~g 89 (396) +|.|+|++ ++|||+++++++|||+|++|++ +|++|||||+||+||+|+|++.||+|||||||++|++|+++|+|+|+| T Consensus 2 ki~I~Pit-RiEGh~~l~l~vd~g~V~~a~~-~~~~~RGfEk~l~Gr~~~d~~~it~RICGiC~~aH~~a~~~AvE~a~g 79 (530) T d1yq9h1 2 KIVVDPIT-RIEGHLRIEVEVEGGKIKNAWS-MSTLFRGLEMILKGRDPRDAQHFTQRACGVCTYVHALASVRAVDNCVG 79 (530) T ss_dssp EEEECSCC-SSBSCEEEEEEEETTEEEEEEE-EECBCCCHHHHHTTSCGGGHHHHHHTTCSSSTTHHHHHHHHHHHHHHT T ss_pred CEEECCCC-CEEEEEEEEEEEECCEEEEEEE-CCCCCCHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC T ss_conf 52846877-2243389999983998999998-136662699997799988988774112114686899999999999819 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------------------------------------------- Q ss_conf 8578889999999999999998899987433430564------------------------------------------- Q gi|254780855|r 90 IEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL------------------------------------------- 126 (396) Q Consensus 90 i~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~------------------------------------------- 126 (396) |+||++|++||+|++++|+||||++|||+|+.+|+.. T Consensus 80 i~vp~~a~~lR~L~~~~e~i~sH~l~~~~l~~pD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (530) T d1yq9h1 80 VKIPENATLMRNLTMGAQYMHDHLVHFYHLHALDWVNVANALNADPAKAARLANDLSPRKTTTESLKAVQAKVKALVESG 159 (530) T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTCCSGGGGGCCHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHHHTT T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 98898799999999999999999999998844100255334422768899875321743355589999999998887630 Q ss_pred ----------------------------HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCC--HHHHHHHHHH Q ss_conf ----------------------------1899999999999978997559764763365362000789--8999999999 Q gi|254780855|r 127 ----------------------------TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIP--PELVEDIGCW 176 (396) Q Consensus 127 ----------------------------~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~~~--~~~~~~~~~~ 176 (396) ..+.+++++|+.++++++.++|+++|+++++|||+++.++ ++.+.++... T Consensus 160 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~al~~r~~~~~~~~~~~G~~~h~~~~v~GGv~~~~~~~~~~~~~~~~~ 239 (530) T d1yq9h1 160 QLGIFTNAYFLGGHPAYVLPAEVDLIATAHYLEALRVQVKAARAMAIFGAKNPHTQFTVVGGCTNYDSLRPERIAEFRKL 239 (530) T ss_dssp CCGGGTTCTTTTCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSSCCCEETTEECCGGGGSHHHHHHHHHH T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECEECCCCCCCHHHHHHHHHH T ss_conf 02422354445788630156200023568899999999999999999848876567146571503466788999999999 Q ss_pred HHHHHHHHHHHHHHHHC---------------------------CHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCC Q ss_conf 99999999999999844---------------------------833344212211230333310235665101367601 Q gi|254780855|r 177 CDSFPSALNDISDLLTG---------------------------NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAW 229 (396) Q Consensus 177 ~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~g~~~~~~~~~~~~~G~~~~~~g~~~ 229 (396) ++...++.+...+.+.. ......++...|.........+...|+..+.+++.+ T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~G~~~~~~~~~~~~~~~~~~~e~v~~ 319 (530) T d1yq9h1 240 YKEVREFIEQVYITDLLAVAGFYKNWAGIGKTSNFLTCGEFPTDEYDLNSRYTPQGVIWGNDLSKVDDFNPDLIEEHVKY 319 (530) T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTGGGGGSSCCCCEEECCBCCSSTTCGGGSSBCCEEECTTCTTCCBCCCGGGEEEECTT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCEEECCCCCCCCCCCHHHEEECCCH T ss_conf 99999999987777899888888767764154432203655445552445136763378764231545673461421666 Q ss_pred HHHHC----CCCCCCCCCCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCC-------------------CC Q ss_conf 02101----75443346775400101232012211000116875899999996210357-------------------86 Q gi|254780855|r 230 DLRKS----QPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKN-------------------KV 286 (396) Q Consensus 230 ~~r~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~-------------------~~ 286 (396) +.++. +||..+....+.......+++|++.+.+....+++++++|+.+....... .. T Consensus 320 s~~~~~~~~~p~~~~t~~~~~~~~~~~~ys~~k~p~~~~~~~evGplAR~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (530) T d1yq9h1 320 SWYEGADAHHPYKGVTKPKWTEFHGEDRYSWMKAPRYKGEAFEVGPLASVLVAYAKKHEPTVKAVDLVLKTLGVGPEALF 399 (530) T ss_dssp TTBSSSCCBCGGGCCCCBCCCCTTGGGCCCSSCEEEETTBCCBCSHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCGGGGS T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCEECCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCC T ss_conf 87547754486456677775545666784012231245763202278999864033570479999998987188865568 Q ss_pred CCCCCCCHHHCC--HHHHHHHHHHHHHHCCC-----CCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEEC Q ss_conf 720111123030--44899997567543057-----55577761589748999988951179999987998088999835 Q gi|254780855|r 287 GPVSASDPKIVP--PKRADMKRSMESLIHHF-----KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359 (396) Q Consensus 287 ~~~~~~~~~~~~--~~~~~~~~~~e~l~~~~-----~~~~~~~~~~~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~~ii~ 359 (396) .......++.+. .+...+.++++.+.... +...+...+++|+|+|+||||||+|+||+++ +||+|++||||+ T Consensus 400 ~~~~r~~aR~~E~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~GeG~G~vEApRG~L~H~~~~-~~G~I~~~~ii~ 478 (530) T d1yq9h1 400 STLGRTAARGIQCLTAAQEVEVWLDKLEANVKAGKDDLYTDWQYPTESQGVGFVNAPRGMLSHWIVQ-RGGKIENFQLVV 478 (530) T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCBCCCCCCSEEEEEEEEEETTEEEEEEEEE-ETTEEEEEEEEC T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEE-CCCEEEEEEEEC T ss_conf 6054399999999999999999998413125556775446788999738999998877027999997-799899888989 Q ss_pred CCCCCH---------HHHHHHHCCCCCCH------HHHHHHHCCCCCCCC Q ss_conf 875686---------88999970880575------999897609120553 Q gi|254780855|r 360 PGYAHL---------QAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394 (396) Q Consensus 360 PT~~N~---------~~~e~al~G~~i~D------~~~iirSfDpC~sC~ 394 (396) ||+||+ +++|++|+|++++| ++++|||||||+||+ T Consensus 479 PT~~N~~p~~~~~~~~~~e~al~g~~~~d~~~~~~i~~~iRs~DPC~sCa 528 (530) T d1yq9h1 479 PSTWNLGPRCAEGKLSAVEQALIGTPIADPKRPVEILRTVHSYDPCIACG 528 (530) T ss_dssp HHHHHHCCCCTTCCCCHHHHHHTTCBCSCTTSCHHHHHHHHHTCCBHHHH T ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCC T ss_conf 87111364444446039999836998788521766757861167750320 No 3 >d1cc1l_ e.18.1.1 (L:) Nickel-iron hydrogenase, large subunit {Desulfomicrobium baculatum [TaxId: 899]} Probab=100.00 E-value=0 Score=586.39 Aligned_cols=383 Identities=17% Similarity=0.137 Sum_probs=293.4 Q ss_pred EEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99840686866677559999983998999998804115788987409898785544312123448889999999999983 Q gi|254780855|r 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLL 88 (396) Q Consensus 9 ~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~a~ 88 (396) ++|.++|++ ++|||+++++++|||+|++|+++ +++|||||+||+||+|+|++.||+|||||||++|++|+++|+|+|+ T Consensus 1 ~kI~IdPvt-RiEGh~~l~v~vd~g~V~~a~~~-~~~~RGfEk~l~Gr~~~d~~~i~~RICGiC~~aH~lA~~~AvE~a~ 78 (487) T d1cc1l_ 1 VKISIDPLT-RVEGHLKIEVEVKDGKVVDAKCS-GGMFRGFEQILRGRDPRDSSQIVQRICGVCPTAHCTASVMAQDDAF 78 (487) T ss_dssp CEEEESSCC-SSBSCEEEEEEEETTEEEEEEEE-ECBCCCHHHHTTTSCGGGHHHHGGGGCSSSHHHHHHHHHHHHHHHH T ss_pred CEEEECCCC-EEEEEEEEEEEECCCEEEEEEEC-CCCCCHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH T ss_conf 937968856-37536899999849989999981-3214269999779998898888504211358689999999999980 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------------------------HHHHHHH Q ss_conf 88578889999999999999998899987433430564-----------------------------------1899999 Q gi|254780855|r 89 GIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL-----------------------------------TPPLWGF 133 (396) Q Consensus 89 gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~-----------------------------------~~~~~~~ 133 (396) ||+||++|+++|+|++++|+||||++|||+|+.+++.. ..+.+++ T Consensus 79 gi~vp~~a~~lR~l~~~~e~i~sH~lh~~~l~~pD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 158 (487) T d1cc1l_ 79 GVKVTTNGRITRNLIFGANYLQSHILHFYHLAALDYVKGPDVSPFVPRYANADLLTDRIKDGAKADATNTYGLNQYLKAL 158 (487) T ss_dssp TCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTSCCCSSTTSCSCCTTCCCHHHHCCSHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH T ss_conf 99889789999999999999999898898750203215644340000000046677776512332012346779999999 Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HCCHHH-H---------HHHC Q ss_conf 9999999789975597647633653620007898999999999999999999999998-448333-4---------4212 Q gi|254780855|r 134 EEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLL-TGNRIF-K---------QRNV 202 (396) Q Consensus 134 ~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~---------~~~~ 202 (396) ++|+.++++++++||+++||++++|||++++++.+.+.++...++...+++....... .....+ . .... T Consensus 159 ~~r~~~~~i~~~~gG~~~h~~~~~pGGv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (487) T d1cc1l_ 159 EIRRICHEMVAMFGGRMPHVQGMVVGGATEIPTADKVAEYAARFKEVQKFVIEEYLPLIYTLGSVYTDLFETGIGWKNVI 238 (487) T ss_dssp HHHHHHHHHHHHHHSSSSSCSSEETTEESSCCCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGGSSCCCCCCEE T ss_pred HHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE T ss_conf 99999999999974998676864368747789999999999999999999997658999999987555654277732136 Q ss_pred CEEEECCCCC--CCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCC--------------CEEECCCCCHHHHHCCCHHH Q ss_conf 2112303333--1023566510136760102101754433467754--------------00101232012211000116 Q gi|254780855|r 203 NIGTVKLEDA--WGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD--------------IPIGKHGDCYDRYLVRMMEM 266 (396) Q Consensus 203 ~~g~~~~~~~--~~~~~~G~~~~~~g~~~~~r~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~ 266 (396) ..|.+..... ......|....+++..+|.+...+|..+...++. ......+++|.+.+.+.... T Consensus 239 ~~g~~~~~~~~~~~~~~~g~~~~g~~~~~D~~~i~e~~~~~~~~~~~~~~~~~~~~~t~p~~~~~~~ys~~k~p~y~~~~ 318 (487) T d1cc1l_ 239 AFGVFPEDDDYKTFLLKPGVYIDGKDEEFDSKLVKEYVGHSFFDHSAPGGLHYSVGETNPNPDKPGAYSFVKAPRYKDKP 318 (487) T ss_dssp ECCEEESSTTSCCEEECCEEEETTEEECCCGGGEEEECTTBTBCCSSSSCEEGGGCCCCBCTTCTTCCBSCCEEEETTBC T ss_pred EEECCCCCCCHHHHCCCCCEEECCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCCEECCCCCCCCCCCHHCCCCCCCCC T ss_conf 73022465434553247814765976044476640146603553367665575344111346765433100262017862 Q ss_pred HHHHHHHHHHHHHHC-------------CCC----------CCCCCCCCCHHHCC--HHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 875899999996210-------------357----------86720111123030--44899997567543057555777 Q gi|254780855|r 267 RESVKIIRQCVNRLL-------------GKN----------KVGPVSASDPKIVP--PKRADMKRSMESLIHHFKLYTEG 321 (396) Q Consensus 267 ~~s~~~~~~~~~~~~-------------~~~----------~~~~~~~~~~~~~~--~~~~~~~~~~e~l~~~~~~~~~~ 321 (396) +++++++|..+.... ... .........++... .+...+.++++.+.......... T Consensus 319 ~evGPlAR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~aR~~E~~~~~~~i~~~l~~~~~~~~~~~~~ 398 (487) T d1cc1l_ 319 CEVGPLARMWVQNPELSPVGQKLLKELYGIEAKKFRDLGDKAFSIMGRHVLRAEETWLTAVAVEKWLKQVQPGAETYVKS 398 (487) T ss_dssp CBCSHHHHHHHHCCBCCHHHHHHHHHHHCCCCSBGGGGGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCCCBCCC T ss_pred CCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 00379899986502127147999988643122321567764358699999999999999999999987378999744578 Q ss_pred CCCCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHH---------HHHHHHCCCCCCH------HHHHHHH Q ss_conf 615897489999889511799999879980889998358756868---------8999970880575------9998976 Q gi|254780855|r 322 YHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLAD------VSAILGS 386 (396) Q Consensus 322 ~~~~~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT~~N~~---------~~e~al~G~~i~D------~~~iirS 386 (396) ..+++|+|+|+||||||+|+|||+++ ||+|++||||+||+||++ ++|++|.|++++| ++++||| T Consensus 399 ~~p~~g~GvG~vEApRG~L~H~~~i~-~g~i~~~~ii~PT~~N~~p~~~~~~~~~~e~~l~g~~v~d~~~~~~~~~iirs 477 (487) T d1cc1l_ 399 EIPDAAEGTGFTEAPRGALLHYLKIK-DKKIENYQIVSATLWNANPRDDMGQRGPIEEALIGVPVPDIKNPVNVGRLVRS 477 (487) T ss_dssp CCCSSEEEEEEEEETTEEEEEEEEEE-TTEEEEEEEEETHHHHSCCCCTTCCCCHHHHHHTTCBCSCTTSCHHHHHHHHH T ss_pred CCCCCCEEEEEEECCCHHEEEEEEEE-CCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHC T ss_conf 99999489999988970269999997-99898989988873235433422353399998479987785215679889731 Q ss_pred CCCCCCCC Q ss_conf 09120553 Q gi|254780855|r 387 LDIVFGEV 394 (396) Q Consensus 387 fDpC~sC~ 394 (396) ||||+||+ T Consensus 478 ~DPCisCa 485 (487) T d1cc1l_ 478 YDPCLGCA 485 (487) T ss_dssp TCCBHHHH T ss_pred CCCCCCCC T ss_conf 88651531 No 4 >d1frfl_ e.18.1.1 (L:) Nickel-iron hydrogenase, large subunit {Desulfovibrio fructosovorans [TaxId: 878]} Probab=100.00 E-value=0 Score=585.92 Aligned_cols=385 Identities=15% Similarity=0.106 Sum_probs=290.5 Q ss_pred CEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 15998406868666775599999839989999988041157889874098987855443121234488899999999999 Q gi|254780855|r 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEK 86 (396) Q Consensus 7 ~~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~ 86 (396) .|-.|.|+|++ ++|||++++++||||+|++|+++ +++|||||+||+||+|+|++.||+|||||||++|++|+++|+|+ T Consensus 6 ~~~~I~IdPit-RiEGh~~l~v~vd~g~V~~a~~~-~~~~RGfEk~l~Gr~~~~~~~it~RICGIC~~aH~~A~~~AvE~ 83 (543) T d1frfl_ 6 FTGPIVVDPIT-RIEGHLRIMVEVENGKVKDAWSS-SQLFRGLEIILKGRDPRDAQHFTQRACGVCTYVHALASSRCVDD 83 (543) T ss_dssp CCEEEEESSCC-SSBSCEEEEEEEETTEEEEEEEE-ECBCCCTHHHHTTSCGGGHHHHHGGGCSSSTTHHHHHHHHHHHH T ss_pred CCCCEEECCCC-CEEEEEEEEEEEECCEEEEEEEE-CCCCCHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH T ss_conf 52026977877-32314899999839989999990-36675098986799988978775034310776899999999999 Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------------------------------------- Q ss_conf 8388578889999999999999998899987433430564---------------------------------------- Q gi|254780855|r 87 LLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL---------------------------------------- 126 (396) Q Consensus 87 a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~---------------------------------------- 126 (396) |+||+||++|++||+|++++++||||++|||+|+.+++.. T Consensus 84 a~gi~vp~~A~~lR~L~~~~e~I~sH~lh~~~l~~pD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 163 (543) T d1frfl_ 84 AVKVSIPANARMMRNLVMASQYLHDHLVHFYHLHALDWVDVTAALKADPNKAAKLAASIDTARTGNSEKALKAVQDKLKA 163 (543) T ss_dssp HHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTTGGGTCCGGGGGTSCHHHHHHHHHHHSCCCGGGSHHHHHHHHHHHHH T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 82999897899999999999999988989998625042054112323411788986245655677757889999999998 Q ss_pred ---------------------------------HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCC--CHHHHH Q ss_conf ---------------------------------189999999999997899755976476336536200078--989999 Q gi|254780855|r 127 ---------------------------------TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDI--PPELVE 171 (396) Q Consensus 127 ---------------------------------~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~~--~~~~~~ 171 (396) ..+.+++++|+.++++++++||+++||++++|||+++++ +.+.+. T Consensus 164 ~~~~g~~g~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~i~~~l~G~~~h~~~~v~GGv~~~~~~~~~~~~ 243 (543) T d1frfl_ 164 FVESGQLGIFTNAYFLGGHKAYYLPPEVNLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGCSNYQGLTKDPLA 243 (543) T ss_dssp HHTTTCCGGGTTCTTTTCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSSCCCEETTEECCGGGGSHHHHH T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCEECCCCCCHHHHH T ss_conf 87504456455433457872201773321013477899999999999999997499744572586617125668999999 Q ss_pred HHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHCCEEE---------ECCCCCCCC-------CCCCCCC------------ Q ss_conf 99999999999999999998-448333442122112---------303333102-------3566510------------ Q gi|254780855|r 172 DIGCWCDSFPSALNDISDLL-TGNRIFKQRNVNIGT---------VKLEDAWGW-------GFSGVMI------------ 222 (396) Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~---------~~~~~~~~~-------~~~G~~~------------ 222 (396) +++..++...+++.+.+... .....+...+..++. +........ ..+|... T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~d~ 323 (543) T d1frfl_ 244 NYLALSKEVCQFVNECYIPDLLAVAGFYKDWGGIGGTSNYLAFGEFATDDSSPEKHLATSQFPSGVITGRDLGKVDNVDL 323 (543) T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHTGGGGGSSCCSCEEECCEEESCCSSHHHHHHHEEECCEEECTTCTTCCBCCCT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCH T ss_conf 99999999999999988889999999888776517854331121234666554345664335675276452654430456 Q ss_pred -------CCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCC------------ Q ss_conf -------1367601021017544334677540010123201221100011687589999999621035------------ Q gi|254780855|r 223 -------RGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGK------------ 283 (396) Q Consensus 223 -------~~~g~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~------------ 283 (396) ..|....+.....||......++.......+++|++.+.+.....++++++|+........ T Consensus 324 ~~i~E~~~~s~y~~~~~~~~p~~~~t~p~~~~~~~~~~ys~~k~~~~~~~~~evGPlAR~~~~~~~~~~~~~~~~~~~~~ 403 (543) T d1frfl_ 324 GAIYEDVKYSWYAPGGDGKHPYDGVTDPKYTKLDDKDHYSWMKAPRYKGKAMEVGPLARTFIAYAKGQPDFKKVVDMVLG 403 (543) T ss_dssp TTCEEECTTBTBCTTCTTBCGGGCCCCBCCCCTTCSSSCBSSCEEESSSSCCEESHHHHHHHHHHTTCHHHHHHHHHHHH T ss_pred HHCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHCCCEEECCHHHHHHHCCCCCCCCHHHHHHHHHH T ss_conf 44364256401046766577645778777554444466302112333586011008899852010268434889987676 Q ss_pred -------CCCCCCCCCCHHHCC--HHHHHHHHHHHHHH----CCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCC Q ss_conf -------786720111123030--44899997567543----05755577761589748999988951179999987998 Q gi|254780855|r 284 -------NKVGPVSASDPKIVP--PKRADMKRSMESLI----HHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGN 350 (396) Q Consensus 284 -------~~~~~~~~~~~~~~~--~~~~~~~~~~e~l~----~~~~~~~~~~~~~~G~GvG~vEAPRG~L~H~~~~~~~g 350 (396) ..........+++++ .+...+.++++.+. ...........+++|+|+|+||||||+|+||++++ || T Consensus 404 ~~~~~~~~~~~~~~R~~AR~~E~~~s~~~i~~~i~~l~~~~~~~~~~~~~~~~p~~GeG~G~vEAPRG~L~H~~~i~-~G 482 (543) T d1frfl_ 404 KLSVPATALHSTLGRTAARGIETAIVCANMEKWIKEMADSGAKDNTLCAKWEMPEESKGVGLADAPRGSLSHWIRIK-GK 482 (543) T ss_dssp HHTCCSGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCBCCCCCCSSEEEEEEEEETTEEEEEEEEEE-TT T ss_pred HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEE-CC T ss_conf 41777665689499999999999999999999998433057778862577889997389999988870369999992-99 Q ss_pred CEEEEEEECCCCCCHH---------HHHHHHCCCCCCH------HHHHHHHCCCCCCCC Q ss_conf 0889998358756868---------8999970880575------999897609120553 Q gi|254780855|r 351 KPYRCKIRAPGYAHLQ---------AMEFLCKGHQLAD------VSAILGSLDIVFGEV 394 (396) Q Consensus 351 ~i~~~~ii~PT~~N~~---------~~e~al~G~~i~D------~~~iirSfDpC~sC~ 394 (396) +|++||||+||+||++ ++|++|+|++++| ++++|||||||+||+ T Consensus 483 ~I~~y~ii~PTt~N~~p~~~~~~~~~~e~al~g~~i~d~~~~~~i~~~iRs~DPC~sCa 541 (543) T d1frfl_ 483 KIDNFQLVVPSTWNLGPRGPQGDKSPVEEALIGTPIADPKRPVEILRTVHAFDPCIACG 541 (543) T ss_dssp EEEEEEEECHHHHHHCCCCTTCCCCHHHHHHTTCBCSCTTSCHHHHHHHHHTCCBHHHH T ss_pred EEEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCC T ss_conf 89998898877021254444455459999847998788741777868883468760421 No 5 >d1wuil1 e.18.1.1 (L:19-552) Nickel-iron hydrogenase, large subunit {Desulfovibrio vulgaris [TaxId: 881]} Probab=100.00 E-value=0 Score=579.72 Aligned_cols=386 Identities=15% Similarity=0.104 Sum_probs=287.9 Q ss_pred CCEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 61599840686866677559999983998999998804115788987409898785544312123448889999999999 Q gi|254780855|r 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVE 85 (396) Q Consensus 6 ~~~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE 85 (396) +.|-.|.|+|+. ++|||+++++++|||+|++|++. |++|||||+||+||+|+|++.||+|||||||++|++|+++|+| T Consensus 2 ~~~~~i~IdPit-RiEG~~~l~l~~d~g~V~~a~~~-~~~~RGfEk~l~gr~~~d~~~it~RICGiC~~aH~~a~~~AvE 79 (534) T d1wuil1 2 SYSGPIVVDPVT-RIEGHLRIEVEVENGKVKNAYSS-STLFRGLEIILKGRDPRDAQHFTQRTCGVCTYTHALASTRCVD 79 (534) T ss_dssp CCCEEEEESSCC-SSBSCEEEEEEEETTEEEEEEEE-ECBCCCHHHHHTTSCGGGHHHHHHTTCSSSTTHHHHHHHHHHH T ss_pred CCCCCEEECCCC-EEEEEEEEEEEEECCEEEEEEEC-CCCCCHHHHHHCCCCHHHHHHHHCCCEEECHHHHHHHHHHHHH T ss_conf 856647977856-26545899999839989999982-4566319898679997896655341003178689999999999 Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------------------------------------- Q ss_conf 98388578889999999999999998899987433430564--------------------------------------- Q gi|254780855|r 86 KLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL--------------------------------------- 126 (396) Q Consensus 86 ~a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~--------------------------------------- 126 (396) +|+||+||++|++||+|++++|+||||++|||+|+.+++.. T Consensus 80 ~a~Gi~vP~~a~~lR~L~~~~e~I~sH~l~~~~l~~pD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 159 (534) T d1wuil1 80 NAVGVHIPKNATYIRNLVLGAQYLHDHIVHFYHLHALDFVDVTAALKADPAKAAKVASSISPRKTTAADLKAVQDKLKTF 159 (534) T ss_dssp HHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTCCTGGGGGCCHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHH T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH T ss_conf 99399879889999999999999999999999874530024532333575779998753165323426799988999888 Q ss_pred --------------------------------HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCC--CHHHHHH Q ss_conf --------------------------------189999999999997899755976476336536200078--9899999 Q gi|254780855|r 127 --------------------------------TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDI--PPELVED 172 (396) Q Consensus 127 --------------------------------~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~~--~~~~~~~ 172 (396) .++.+++++|+.++++++++||+++||++++|||+++.+ +...++. T Consensus 160 ~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~i~~~~~G~~~h~~~~~pGGv~~~~~~~~~~~~~ 239 (534) T d1wuil1 160 VETGQLGPFTNAYFLGGHPAYYLDPETNLIATAHYLEALRLQVKAARAMAVFGAKNPHTQFTVVGGVTCYDALTPQRIAE 239 (534) T ss_dssp HHTTCCGGGTTCTTTTCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSSCCCEETTEECCGGGGSHHHHHH T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHH T ss_conf 76411477665434578751346701011356789999999999999999982887444521026522578899899999 Q ss_pred HHHHHHHHHHHHHHHHHHH-----HCCHHHH----------------------HHHCCEEEECCCCCCCCCCCCCCCCCC Q ss_conf 9999999999999999998-----4483334----------------------421221123033331023566510136 Q gi|254780855|r 173 IGCWCDSFPSALNDISDLL-----TGNRIFK----------------------QRNVNIGTVKLEDAWGWGFSGVMIRGS 225 (396) Q Consensus 173 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~----------------------~~~~~~g~~~~~~~~~~~~~G~~~~~~ 225 (396) +...++....+.....+.. ..+..+. .++...|.............++....+ T Consensus 240 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~G~~~~~~~~~~~~~d~~~i~e 319 (534) T d1wuil1 240 FEALWKETKAFVDEVYIPDLLVVAAAYKDWTQYGGTDNFITFGEFPKDEYDLNSRFFKPGVVFKRDFKNIKPFDKMQIEE 319 (534) T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHTGGGGGSCCCSCEEEEEEEESSTTCGGGEEEEEEEESTTCTTSCBCCCGGGEEE T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCCCCCCCCCHHHCEECCCEEECCCCCEECCCCHHHHEE T ss_conf 99999999999999888899998775401565178644120100456555301121037568868765112457256101 Q ss_pred CCCCHHH----HCCCCCCCCCCCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCC--------------C--- Q ss_conf 7601021----017544334677540010123201221100011687589999999621035--------------7--- Q gi|254780855|r 226 GAAWDLR----KSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGK--------------N--- 284 (396) Q Consensus 226 g~~~~~r----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~--------------~--- 284 (396) ++..+.. ..+||.......+.......+++|++.+.+....++.++++|......... . T Consensus 320 ~v~~s~y~~~~~~~P~~~~t~p~~~~~~~~~~ysw~kapry~g~~~evGPlAR~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (534) T d1wuil1 320 HVRHSWYEGAEARHPWKGQTQPKYTDLHGDDRYSWMKAPRYMGEPMETGPLAQVLIAYSQGHPKVKAVTDAVLAKLGVGP 399 (534) T ss_dssp ECTTBTBSSSCCBCGGGCCCCBCCCCTTBTTBCBSSCEEEETTBCCBCSHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCG T ss_pred CCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC T ss_conf 47188744775457666777766333465555323115522785303028899986655338211678787898529886 Q ss_pred --CCCCCCCCCHHHCC--HHHHHHHHHHHHHHCC----CCCCCCCC-CCCCCCEEEEEECCCCEEEEEEEECCCCCEEEE Q ss_conf --86720111123030--4489999756754305----75557776-158974899998895117999998799808899 Q gi|254780855|r 285 --KVGPVSASDPKIVP--PKRADMKRSMESLIHH----FKLYTEGY-HVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRC 355 (396) Q Consensus 285 --~~~~~~~~~~~~~~--~~~~~~~~~~e~l~~~----~~~~~~~~-~~~~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~ 355 (396) .........+++.+ .+...++++++.+... ...+..+. .+++|+|+|++|||||+|+||++++ ||+|++| T Consensus 400 ~~~~~~~~R~~aR~~E~~~s~~~~~~~l~~l~~~~~~~~~~~~~p~~~p~~GeG~g~vEApRG~L~H~~~i~-~G~I~~y 478 (534) T d1wuil1 400 EALFSTLGRTAARGIETAVIAEYVGVMLQEYKDNIAKGDNVICAPWEMPKQAEGVGFVNAPRGGLSHWIRIE-DGKIGNF 478 (534) T ss_dssp GGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCBCCCCCCSSEEEEEEEEETTEEEEEEEEEE-TTEEEEE T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEE-CCEEEEE T ss_conf 556888999999999999999999999997464034578640278779997189999988874289999980-9989898 Q ss_pred EEECCCCCCHH---------HHHHHHCCCCCCH------HHHHHHHCCCCCCCC Q ss_conf 98358756868---------8999970880575------999897609120553 Q gi|254780855|r 356 KIRAPGYAHLQ---------AMEFLCKGHQLAD------VSAILGSLDIVFGEV 394 (396) Q Consensus 356 ~ii~PT~~N~~---------~~e~al~G~~i~D------~~~iirSfDpC~sC~ 394 (396) |||+||+||++ ++|++|+|++++| ++++|||||||+||+ T Consensus 479 ~ii~PT~~N~~p~~~~~~~~~~e~~l~g~~v~d~~~~~~i~~~iRsfDPCisCa 532 (534) T d1wuil1 479 QLVVPSTWTLGPRCDKNKLSPVEASLIGTPVADAKRPVEILRTVHSFDPCIACG 532 (534) T ss_dssp EEECHHHHHHCCCCTTCCCCHHHHHHTTCBCSCTTSCHHHHHHHHHTCCBHHHH T ss_pred EEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCC T ss_conf 897977010553332455449999827998788630665656640057861532 No 6 >d1e3db_ e.18.1.1 (B:) Nickel-iron hydrogenase, large subunit {Desulfovibrio desulfuricans [TaxId: 876]} Probab=100.00 E-value=0 Score=570.15 Aligned_cols=384 Identities=15% Similarity=0.126 Sum_probs=277.8 Q ss_pred CEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 15998406868666775599999839989999988041157889874098987855443121234488899999999999 Q gi|254780855|r 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEK 86 (396) Q Consensus 7 ~~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~ 86 (396) .|-.|.|.|++ ++|||+++++++|||+|++|+++ +++|||||+||+||+|+|+++||+|||||||++|++|+++|+|+ T Consensus 6 ~~~~I~I~P~t-RiEGh~~l~v~~d~g~V~~a~~~-~~~~RGfEk~l~Gr~~~~~~~it~RICGIC~~sH~~a~~~AvE~ 83 (537) T d1e3db_ 6 YTGPIVVDPLT-RIEGHLRIEVEVEGGVIKEARSC-ATLFRGIETILKGRDPRDAQHFTQRTCGVCTYTHALASTRCLED 83 (537) T ss_dssp CCEEEEESSCC-SSBSCEEEEEEEETTEEEEEEEE-ECBCCCHHHHHTTSCGGGHHHHHHTTCSTTTTHHHHHHHHHHHH T ss_pred CCCCEEECCCC-CEEEEEEEEEEEECCEEEEEEEE-EECCCHHHHHHCCCCHHHHHHHHCCHHEECHHHHHHHHHHHHHH T ss_conf 64025987866-32335899999829989999992-20463198986799978977663412140886899999999999 Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------------------------------------- Q ss_conf 8388578889999999999999998899987433430564---------------------------------------- Q gi|254780855|r 87 LLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL---------------------------------------- 126 (396) Q Consensus 87 a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~---------------------------------------- 126 (396) |+|++||++|++||+|++++|+||||++|||+|+.+++.. T Consensus 84 a~gi~~P~~a~~lR~L~~~~e~i~sH~lh~~~l~~pD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (537) T d1e3db_ 84 AINKPIPANATYIRNLVLGNQFMHDHLVHFYHLHALDFVDVTSALLADPAKAAKLANSISPRKATTEEFAAVQAKLKTFV 163 (537) T ss_dssp HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTCCTTGGGGSCHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHH T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH T ss_conf 80999998899999999999999999999998725211034334435736799986402752246388999877777776 Q ss_pred -------------------------------HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCC--CCCHHHHHHH Q ss_conf -------------------------------1899999999999978997559764763365362000--7898999999 Q gi|254780855|r 127 -------------------------------TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQ--DIPPELVEDI 173 (396) Q Consensus 127 -------------------------------~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~--~~~~~~~~~~ 173 (396) ..+.+++++|+.++++++++||+++||++++|||+++ .++.+.++++ T Consensus 164 ~~g~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~l~al~~r~~~~~i~~~~gG~~~h~~~~~pGGv~~~~~l~~~~l~~~ 243 (537) T d1e3db_ 164 ASGQLGPFTNAYFLGGHEGYYMDPEANLVCTAHYLQALRAQVEVAKGMAVFGAKNPHTQFTVAGGVTCYEALTPERIKQF 243 (537) T ss_dssp HTSCCGGGTTCTTTTCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSSCCCEETTEECCGGGGSHHHHHHH T ss_pred HHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCEECCCCCCHHHHHHH T ss_conf 53013765320002676201367022146788899999999999999998617877703143475612666999999999 Q ss_pred HHHHHHHHHHHHHHHHHH--HCCHHHHHHHCCEEE---------ECCCCCCC-----CCCCCCC-CC--CCCCCCHHH-- Q ss_conf 999999999999999998--448333442122112---------30333310-----2356651-01--367601021-- Q gi|254780855|r 174 GCWCDSFPSALNDISDLL--TGNRIFKQRNVNIGT---------VKLEDAWG-----WGFSGVM-IR--GSGAAWDLR-- 232 (396) Q Consensus 174 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~---------~~~~~~~~-----~~~~G~~-~~--~~g~~~~~r-- 232 (396) ...++...++.+..+... .....+.+ +...|. +....... +...|.. .+ .....+|.. T Consensus 244 ~~~l~~~~~~~e~~~~~d~~~~~~~~~~-~~~~g~~~~~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~i 322 (537) T d1e3db_ 244 RELYVKARAFIEEVYIPDLLLVASYYKD-WGKIGGTNNFMAFGEFPAPGGERDLNSRWYKPGVIYDRKVGSVQPFDPSKI 322 (537) T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHCGG-GGGSSCCSCEEEEEECCCTTCTTCGGGSSEEEEEECTTCGGGCBCCCGGGE T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCEEEECCCCCCCCCCCHHHHCCCCCEEEECCCCCCCCCCHHHC T ss_conf 9999999999999888999999987666-875278454022335346665542122012686688257773012568864 Q ss_pred -HCCCCCCCC-----------CCCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCC------------------ Q ss_conf -017544334-----------67754001012320122110001168758999999962103------------------ Q gi|254780855|r 233 -KSQPYECYS-----------ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLG------------------ 282 (396) Q Consensus 233 -~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~------------------ 282 (396) ++.++++|. ...+........++|...+.+....++.++++|........ T Consensus 323 ~e~v~~s~y~~~~~~p~~~~t~P~~~~~~~~~~ys~~k~~~y~g~~~evGPlAR~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (537) T d1e3db_ 323 EEHVRHSWYEGKARAPFEGETNPHFTFMGDTDKYSWNKAPRYDGHAVETGPLAQMLVAYGHNHKTIKPTIDAVLGKLNLG 402 (537) T ss_dssp EEECTTBTBCSCCBCGGGCCCCBCCCCTTCSSSCBSSCEEEETTBCCBCSHHHHHHHHHHTTCTTHHHHHHHHHHHHTCC T ss_pred CCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHCCCC T ss_conf 14564233056666886676567743345333542022411148865346998876255547500006678899871988 Q ss_pred -CCCCCCCCCCCHHHCC--HHHHHHHHHHHHHHCC----CCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCEEEE Q ss_conf -5786720111123030--4489999756754305----75557776158974899998895117999998799808899 Q gi|254780855|r 283 -KNKVGPVSASDPKIVP--PKRADMKRSMESLIHH----FKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRC 355 (396) Q Consensus 283 -~~~~~~~~~~~~~~~~--~~~~~~~~~~e~l~~~----~~~~~~~~~~~~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~ 355 (396) ...........+++++ .+...+.++++.+... .+.......+++|+|+|++|||||+|+||++++ ||+|++| T Consensus 403 ~~~~~~~~~R~~aR~~E~~~~~e~~~~~l~~l~~~~~~~~~~~~~~~~p~~G~G~G~vEAPRG~L~H~~~~~-~G~I~~~ 481 (537) T d1e3db_ 403 PEALFSTLGRTAARGIQTLVIAQQMENWLNEYENNIVKDKQIVEDYAVPTSARGVGFADVSRGGLSHWMTIE-DGKIDNF 481 (537) T ss_dssp GGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCBCCCCCCSSEEEEEEEEETTEEEEEEEEEE-TTEEEEE T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEC-CCEEEEE T ss_conf 655788175499999999999999999998776258889823177889998679999998786589999983-9989899 Q ss_pred EEECCCCCCH---------HHHHHHHCCCCCCH------HHHHHHHCCCCCCCC Q ss_conf 9835875686---------88999970880575------999897609120553 Q gi|254780855|r 356 KIRAPGYAHL---------QAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394 (396) Q Consensus 356 ~ii~PT~~N~---------~~~e~al~G~~i~D------~~~iirSfDpC~sC~ 394 (396) |||+||+||+ +++|.+|.|++++| ++++|||||||+||+ T Consensus 482 ~ii~PT~~N~~p~~~~~~~~~~e~~l~g~~~~d~~~~~~i~~~iRs~DPC~sCa 535 (537) T d1e3db_ 482 QLVVPTTWNLGPRDDKGVPSAAEAALVGTPVADPKRPVEILRTIHSFDPCIACS 535 (537) T ss_dssp EEECHHHHHTCCCCTTCCCCHHHHHHTTCBCSCTTSCHHHHHHHHHTCCBHHHH T ss_pred EEECCCHHHCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCC T ss_conf 998977100463201466429999848998788530655657862167650100 No 7 >d1ffvc1 d.87.2.1 (C:178-287) Carbon monoxide (CO) dehydrogenase flavoprotein, C-terminal domain {Hydrogenophaga pseudoflava [TaxId: 47421]} Probab=76.88 E-value=1.8 Score=19.16 Aligned_cols=35 Identities=14% Similarity=0.288 Sum_probs=24.5 Q ss_pred EEEEEECCEEEEEEEEECCC------HHHHHHHHCCCCHHH Q ss_conf 99998399899999880411------578898740989878 Q gi|254780855|r 26 LILELDGEIVERVDPHIGLL------HRGTEKLIETKTFLQ 60 (396) Q Consensus 26 ~~~~v~~~~V~~a~~~~g~~------~RGfE~il~Gr~~~d 60 (396) +.++++|++|.++++..|.+ ....|++|.|+++.+ T Consensus 23 ~~~~~~~~~i~~~ria~ggv~~~P~r~~~~e~~L~G~~~~~ 63 (110) T d1ffvc1 23 VVMRKSGNTVSHIRIALTNVAPTALRAEAAEAALLGKAFTK 63 (110) T ss_dssp EEEEEETTEEEEEEEEEESSSSSCEECHHHHHTTBTSBCCH T ss_pred EEEEEECCEEEEEEEEEECCCCEEEEEHHHHHHHCCCCCCH T ss_conf 68997299798999998536875676044443303776666 No 8 >d1vqza1 d.224.1.3 (A:242-329) LplA-like protein SP1160, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Probab=74.71 E-value=1.6 Score=19.65 Aligned_cols=49 Identities=6% Similarity=0.167 Sum_probs=31.3 Q ss_pred CCEEEEEEEECCEEEEEEEEECCCH----HHHHHHHCCCCHHHHHHHHHHHHHH Q ss_conf 7559999983998999998804115----7889874098987855443121234 Q gi|254780855|r 22 GVLRLILELDGEIVERVDPHIGLLH----RGTEKLIETKTFLQAVPYFDRLDYV 71 (396) Q Consensus 22 g~l~~~~~v~~~~V~~a~~~~g~~~----RGfE~il~Gr~~~da~~it~RICGI 71 (396) |.+.+.+.|++|+|.++++..-.+. .-+|..|.|..+.. -.|.+.++.+ T Consensus 16 G~vev~l~V~~G~I~~iki~GDff~~~~i~~le~~L~G~~y~~-~~i~~~L~~~ 68 (88) T d1vqza1 16 GKVEVFANVTESKIQDIKIYGDFFGIEDVAAVEDVLRGVKYER-EDVLKALKTI 68 (88) T ss_dssp EEEEEEEEEETTEEEEEEEEESCCCSSCTHHHHHHHTTCBSSH-HHHHHHHTTS T ss_pred CEEEEEEEEECCEEEEEEEEECCCCCHHHHHHHHHHCCCCCCH-HHHHHHHHHC T ss_conf 6799999981898979999804799312999999976997789-9999999848 No 9 >d1t3qc1 d.87.2.1 (C:177-285) Quinoline 2-oxidoreductase medium subunit QorM {Pseudomonas putida [TaxId: 303]} Probab=63.99 E-value=3.4 Score=17.26 Aligned_cols=36 Identities=11% Similarity=0.083 Sum_probs=23.4 Q ss_pred EEEEEECCEEEEEEEEECC------CHHHHHHHHCCCCHHHH Q ss_conf 9999839989999988041------15788987409898785 Q gi|254780855|r 26 LILELDGEIVERVDPHIGL------LHRGTEKLIETKTFLQA 61 (396) Q Consensus 26 ~~~~v~~~~V~~a~~~~g~------~~RGfE~il~Gr~~~da 61 (396) +.++++|++|.++++..|. ...+.|..|+|+++.+. T Consensus 21 ~~~~~~~g~i~~~ria~G~v~~~p~r~~~~E~~L~G~~~~~~ 62 (109) T d1t3qc1 21 AGLSMQGGRCVAARIALGAVEERAHQAIRANDFLVGKVIDES 62 (109) T ss_dssp EEEEEETTEEEEEEEEEESSSSSCEECHHHHHHHTTCCCCHH T ss_pred EEEEEECCEEEEEEEEEECCCCCCCCHHHHHHHHCCCCCHHH T ss_conf 279985998989999997768814657999998728974157 No 10 >d1v97a4 d.87.2.1 (A:415-528) Xanthine oxidase, domain 4 (?) {Cow (Bos taurus) [TaxId: 9913]} Probab=62.90 E-value=3.6 Score=17.13 Aligned_cols=36 Identities=11% Similarity=0.015 Sum_probs=25.1 Q ss_pred EEEEEEC--CEEEEEEEEECCCH------HHHHHHHCCCCHHHH Q ss_conf 9999839--98999998804115------788987409898785 Q gi|254780855|r 26 LILELDG--EIVERVDPHIGLLH------RGTEKLIETKTFLQA 61 (396) Q Consensus 26 ~~~~v~~--~~V~~a~~~~g~~~------RGfE~il~Gr~~~da 61 (396) +.+.+|+ ++|.++++..|.+- .-.|.+|.|+...+. T Consensus 24 ~~v~l~~~~~~i~~~ria~Ggva~~p~r~~~~E~~L~Gk~~~~~ 67 (114) T d1v97a4 24 MRVLFQPGSMQVKELALCYGGMADRTISALKTTQKQLSKFWNEK 67 (114) T ss_dssp EEEEESTTSSBEEEEEEEEESSSSSCEECHHHHHTTTTCBSSHH T ss_pred EEEEEECCCCEEEEEEEEEECCCCCCCHHHHHHHHHCCCCCCHH T ss_conf 78999869998989999876377644039999998707988999 No 11 >d1xjsa_ d.224.1.2 (A:) NifU {Bacillus subtilis [TaxId: 1423]} Probab=61.18 E-value=3.3 Score=17.36 Aligned_cols=51 Identities=22% Similarity=0.351 Sum_probs=31.1 Q ss_pred CEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH Q ss_conf 5599999839989999988041157889874098987855443121234488899999999999838857888999999 Q gi|254780855|r 23 VLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRV 101 (396) Q Consensus 23 ~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~a~gi~vp~~a~llR~ 101 (396) .+++.+.+++++|+++.+.. +| |.+|-. +++...|.+-|-++.....+... T Consensus 44 ~i~i~l~i~~~~I~d~~f~~----~G--------------------Cai~~A----Sasil~e~~~gk~~~~a~~l~~~ 94 (147) T d1xjsa_ 44 RIRLTMKLDGDIVEDAKFEG----EG--------------------CSISMA----SASMMTQAIKGKDIETALSMSKI 94 (147) T ss_dssp EEEEEEECCSSBCCEEEEEE----ES--------------------SHHHHH----HHHHHHHHHTTSBHHHHHHHHHH T ss_pred EEEEEEEECCCCEEEEEEEE----CC--------------------CHHHHH----HHHHHHHHHCCCCHHHHHHHHHH T ss_conf 89999998588137877664----24--------------------578888----99999999828989999999999 No 12 >d1jroa3 d.87.2.1 (A:346-462) Xanthine dehydrogenase chain A, domain 4 {Rhodobacter capsulatus [TaxId: 1061]} Probab=54.86 E-value=4.9 Score=16.21 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=27.6 Q ss_pred EEEEEEECCEEEEEEEEECCC------HHHHHHHHCCCCHHHHH Q ss_conf 999998399899999880411------57889874098987855 Q gi|254780855|r 25 RLILELDGEIVERVDPHIGLL------HRGTEKLIETKTFLQAV 62 (396) Q Consensus 25 ~~~~~v~~~~V~~a~~~~g~~------~RGfE~il~Gr~~~da~ 62 (396) =+.++++|++|.++++..|.+ ....|..|.|+++.+.. T Consensus 22 A~~~~~~~~~i~~~ria~G~v~~~P~r~~~~e~~L~gk~~~~~~ 65 (117) T d1jroa3 22 CLNLTLKGSKIETARIAFGGMAGVPKRAAAFEAALIGQDFREDT 65 (117) T ss_dssp EEEEEEETTEEEEEEEEEESSSSSCEECHHHHHHHTTSBCSHHH T ss_pred EEEEEECCCCEEEEEEEECCCCCEEEEHHHHHHHHCCCCCCHHH T ss_conf 58999758956789998424587576569999997068887678 No 13 >d1n62c1 d.87.2.1 (C:178-286) Carbon monoxide (CO) dehydrogenase flavoprotein, C-terminal domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]} Probab=53.08 E-value=5.2 Score=16.02 Aligned_cols=35 Identities=9% Similarity=0.139 Sum_probs=22.6 Q ss_pred EEEEEECCEEEEEEEEECCC------HHHHHHHHCCCCHHH Q ss_conf 99998399899999880411------578898740989878 Q gi|254780855|r 26 LILELDGEIVERVDPHIGLL------HRGTEKLIETKTFLQ 60 (396) Q Consensus 26 ~~~~v~~~~V~~a~~~~g~~------~RGfE~il~Gr~~~d 60 (396) +.+.+||++|.++++..|.+ ....|+.|.|+.+.+ T Consensus 23 ~~~~~d~g~i~~~ria~ggv~~~p~r~~~~e~~L~g~~~~~ 63 (109) T d1n62c1 23 VVLTMSGGKCVTASIGLTNVANTPLWAEEAGKVLVGTALDK 63 (109) T ss_dssp EEEEEETTEEEEEEEEEESSSSSCEECHHHHHHHTTSCCCH T ss_pred EEEEEECCEEEEEEEEEECCCCEEEEHHHHHHHHCCCCCHH T ss_conf 48999699099999999756671552677788870775106 No 14 >d1x2ga1 d.224.1.3 (A:247-337) Two-domain LplA, C-terminal domain {Escherichia coli [TaxId: 562]} Probab=47.22 E-value=6.3 Score=15.41 Aligned_cols=65 Identities=12% Similarity=0.159 Sum_probs=39.6 Q ss_pred CCEEEEEEEECCEEEEEEEEECCCH----HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH Q ss_conf 7559999983998999998804115----788987409898785544312123448889999999999983885788899 Q gi|254780855|r 22 GVLRLILELDGEIVERVDPHIGLLH----RGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQ 97 (396) Q Consensus 22 g~l~~~~~v~~~~V~~a~~~~g~~~----RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~a~gi~vp~~a~ 97 (396) |.+.+.+.|++|+|.++.+-.-.+. .-+|..|.|.++. ..++..+=+.+.++-|.... T Consensus 16 G~ve~~l~V~~G~I~~~~i~gDfl~~~~i~~le~~L~G~~y~------------------~~~i~~~l~~~~~~~~~~~~ 77 (91) T d1x2ga1 16 GGVELHFDVEKGHITRAQVFTDSLNPAPLEALAGRLQGCLYR------------------ADMLQQECEALLVDFPEQEK 77 (91) T ss_dssp EEEEEEEEEETTEEEEEEEEECCSCCHHHHHHHHHHTTCBSS------------------HHHHHHHHHHTGGGCGGGHH T ss_pred CEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHHHHCCCCCC------------------HHHHHHHHHHHHHHCHHHHH T ss_conf 169999997279898999986889927899999997699868------------------99999999998765876899 Q ss_pred HHHHHHH Q ss_conf 9999999 Q gi|254780855|r 98 LIRVLYS 104 (396) Q Consensus 98 llR~Ll~ 104 (396) .++++.- T Consensus 78 ~l~e~~~ 84 (91) T d1x2ga1 78 ELRELSA 84 (91) T ss_dssp HHHHHHH T ss_pred HHHHHHH T ss_conf 9999999 No 15 >d1rm6b1 d.87.2.1 (B:217-323) 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, C-terminal domain {Thauera aromatica [TaxId: 59405]} Probab=42.62 E-value=6 Score=15.58 Aligned_cols=37 Identities=11% Similarity=0.012 Sum_probs=27.9 Q ss_pred EEEEEEEECCEEEEEEEEECCC----HHHHHHHHCCCCHHH Q ss_conf 5999998399899999880411----578898740989878 Q gi|254780855|r 24 LRLILELDGEIVERVDPHIGLL----HRGTEKLIETKTFLQ 60 (396) Q Consensus 24 l~~~~~v~~~~V~~a~~~~g~~----~RGfE~il~Gr~~~d 60 (396) .-+.+.+||++|.++++..|.+ .|--|..|.|+.+.+ T Consensus 22 vAv~~~~~~g~i~~~ria~ggv~~~P~r~~e~~l~G~~~~~ 62 (107) T d1rm6b1 22 VAAALQRDGDRIAGLRVAITGSNSAPLMVPVDALLGGNWDD 62 (107) T ss_dssp EEEEEEEETTEEEEEEEEEESSSSSCEECCCGGGTTSCCSH T ss_pred HHHEEEECCCCEEEEEEEEECCCCCEEEHHHHHHCCCCCCC T ss_conf 75238974996889999860567812540765754898881 No 16 >d1ufia_ a.30.4.1 (A:) Dimerisation domain of CENP-B {Human (Homo sapiens) [TaxId: 9606]} Probab=38.59 E-value=6.5 Score=15.31 Aligned_cols=13 Identities=31% Similarity=0.516 Sum_probs=9.5 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999988999874 Q gi|254780855|r 106 IGRILSHLLNVTT 118 (396) Q Consensus 106 ~e~i~sH~~h~~~ 118 (396) -+++|||++|+-. T Consensus 27 d~rvqshilhleh 39 (48) T d1ufia_ 27 DDRVQSHILHLEH 39 (48) T ss_dssp CHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 4899988988520 No 17 >d1wfza_ d.224.1.2 (A:) Iron-sulfur cluster protein U (IscU) {Mouse (Mus musculus), mitochondrial [TaxId: 10090]} Probab=37.90 E-value=8.7 Score=14.45 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=27.2 Q ss_pred CCEEEEEEEEC-CEEEEEEEEECCCHHH----------HHHHHCCCCHHHHHHHHH Q ss_conf 75599999839-9899999880411578----------898740989878554431 Q gi|254780855|r 22 GVLRLILELDG-EIVERVDPHIGLLHRG----------TEKLIETKTFLQAVPYFD 66 (396) Q Consensus 22 g~l~~~~~v~~-~~V~~a~~~~g~~~RG----------fE~il~Gr~~~da~~it~ 66 (396) -.+++.+.|++ ++|+++.+.. .| +=.+++||+..++..|+. T Consensus 35 D~i~i~l~v~~~~~I~di~F~~----~GC~is~AsaS~~tel~~Gkt~~ea~~i~~ 86 (130) T d1wfza_ 35 DVMKLQIQVDEKGKIVDARFKT----FGCGSAIASSSLATEWVKGKTVEEALTIKN 86 (130) T ss_dssp EEEEEEEEECSSSBEEEEEEEC----CSCHHHHHHHHHHHHHHTTSBHHHHHHCCH T ss_pred CEEEEEEEECCCCEEEEEEEEE----ECCCHHHHHHHHHHHHHHCCCHHHHHHCCC T ss_conf 5899999955899398999984----278354779999999986168899873173 No 18 >d1su0b_ d.224.1.2 (B:) IscU homolog SPy0289 {Streptococcus pyogenes [TaxId: 1314]} Probab=36.57 E-value=9.1 Score=14.31 Aligned_cols=52 Identities=13% Similarity=0.232 Sum_probs=34.4 Q ss_pred CEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH Q ss_conf 55999998399899999880411578898740989878554431212344888999999999998388578889999999 Q gi|254780855|r 23 VLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVL 102 (396) Q Consensus 23 ~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~a~gi~vp~~a~llR~L 102 (396) -+++.+.+++++|+++.+.. +| |++|-. +++...|.+-|..+.....+...+ T Consensus 38 ~i~i~l~i~~~~I~di~f~~----~G--------------------Cai~~A----Sasil~e~i~gk~~~e~~~l~~~~ 89 (136) T d1su0b_ 38 VISLTVKFDEDKIEDIAFAG----NG--------------------CTISTA----SSSMMTDAVIGKSKEEALALADIF 89 (136) T ss_dssp EEEEEEEESSSSEEEEEEEE----EC--------------------CHHHHH----HHHHHHHHHTTCCHHHHHHHHHHH T ss_pred EEEEEEEECCCEEEEEEEEE----CC--------------------CHHHHH----HHHHHHHHHHCCCHHHHHHHHHHH T ss_conf 79999997588146778775----16--------------------779899----999999999578999999999999 No 19 >d1r9pa_ d.224.1.2 (A:) NifU-like protein HI0377 {Haemophilus influenzae [TaxId: 727]} Probab=35.81 E-value=9.4 Score=14.23 Aligned_cols=39 Identities=21% Similarity=0.320 Sum_probs=28.1 Q ss_pred CEEEEEEEECC-EEEEEEEEECCCHHH----------HHHHHCCCCHHHHHHHH Q ss_conf 55999998399-899999880411578----------89874098987855443 Q gi|254780855|r 23 VLRLILELDGE-IVERVDPHIGLLHRG----------TEKLIETKTFLQAVPYF 65 (396) Q Consensus 23 ~l~~~~~v~~~-~V~~a~~~~g~~~RG----------fE~il~Gr~~~da~~it 65 (396) -++|.+.++++ .|+|+.+.. +| +=.+++|++..+|..|+ T Consensus 40 ~v~i~l~i~~~~~I~di~f~~----~GCais~Asas~~~e~i~Gkt~~ea~~i~ 89 (134) T d1r9pa_ 40 VMQLQIKVDDNGIIEDAKFKT----YGCGSAIASSSLITEWVKGKSLEEAGAIK 89 (134) T ss_dssp EEEEEEEECSSSBEEEEEEEE----ESSSSHHHHHHHHHHHSSSSBHHHHTTSH T ss_pred EEEEEEEECCCCEEEEEEEEE----CCCCCCHHHHHHHHHHHHHCCHHHHHHHC T ss_conf 799999976985277788983----06860076999999999727898999850 No 20 >d1jpma2 d.54.1.1 (A:1-125) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} Probab=35.01 E-value=9.6 Score=14.14 Aligned_cols=38 Identities=16% Similarity=0.078 Sum_probs=21.8 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8987409898785544312123448889999999999983 Q gi|254780855|r 49 TEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLL 88 (396) Q Consensus 49 fE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~a~ 88 (396) |...++|+++.+...+..++....+..+ ++.-|+|.|+ T Consensus 70 ~~p~l~g~~~~~~~~~~~~l~~~~~~~~--~a~aaid~Al 107 (125) T d1jpma2 70 LKPALLGKSLAGYEAILHDIQHLLTGNM--SAKAAVEMAL 107 (125) T ss_dssp HHHHHTTCBGGGHHHHHHHHHHSSSSCH--HHHHHHHHHH T ss_pred HHHHHCCCCCCCHHHHHHHHHHHCCCCC--HHHHHHHHHH T ss_conf 7766515671259999998666505863--8999999999 No 21 >d2ntka1 d.153.2.1 (A:1-202) Hypothetical protein MTH1020 {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Probab=29.58 E-value=6.9 Score=15.15 Aligned_cols=14 Identities=36% Similarity=0.643 Sum_probs=6.4 Q ss_pred HHHHHCCCCCCHHH Q ss_conf 99997088057599 Q gi|254780855|r 368 MEFLCKGHQLADVS 381 (396) Q Consensus 368 ~e~al~G~~i~D~~ 381 (396) -+.++-|.++.++| T Consensus 167 a~~~~dg~~~~~FE 180 (202) T d2ntka1 167 AEFILKGGEFAAFT 180 (202) T ss_dssp HHHHHHSGGGGGSC T ss_pred HHHHHCCCCCCCCC T ss_conf 99875679650137 No 22 >d1t8ka_ a.28.1.1 (A:) Acyl carrier protein {Escherichia coli [TaxId: 562]} Probab=28.48 E-value=12 Score=13.41 Aligned_cols=57 Identities=16% Similarity=0.081 Sum_probs=35.3 Q ss_pred CCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHHHHHHHHHHHH Q ss_conf 9898785544312--12344888999999999998388578889-9999999999999988 Q gi|254780855|r 55 TKTFLQAVPYFDR--LDYVAPMNQEHAYALAVEKLLGIEIPIRG-QLIRVLYSEIGRILSH 112 (396) Q Consensus 55 Gr~~~da~~it~R--ICGIC~~aH~~Aa~~AiE~a~gi~vp~~a-~llR~Ll~~~e~i~sH 112 (396) |.++.+...=+.- --|+-|.. .+--+.++|+.||+++|+.. .-++.+-....+|++| T Consensus 16 ~i~~~~i~~~~~l~~dLg~DSl~-~~el~~~iE~~f~i~i~~~~~~~~~Tv~dlv~~i~~~ 75 (77) T d1t8ka_ 16 GVKQEEVTNNASFVEDLGADSLD-TVELVMALEEEFDTEIPDEEAEKITTVQAAIDYINGH 75 (77) T ss_dssp TCCGGGCCTTCBTTTTTCCCHHH-HHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHHHHHHT T ss_pred CCCHHHCCCCCCCHHCCCCCHHH-HHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHC T ss_conf 88987769998601202446248-9999999999868998999987189999999999876 No 23 >d1u07a_ d.212.1.2 (A:) TonB {Escherichia coli [TaxId: 562]} Probab=26.82 E-value=13 Score=13.22 Aligned_cols=27 Identities=15% Similarity=0.091 Sum_probs=20.2 Q ss_pred CEEEEEEEECCCCCEEEEEEECCCCCC Q ss_conf 117999998799808899983587568 Q gi|254780855|r 338 GEFGVYLISDGGNKPYRCKIRAPGYAH 364 (396) Q Consensus 338 G~L~H~~~~~~~g~i~~~~ii~PT~~N 364 (396) |.....+.++++|+|.+++|+-.|-.+ T Consensus 25 G~V~v~f~I~~~G~v~~~~v~~ssg~~ 51 (90) T d1u07a_ 25 GQVKVKFDVTPDGRVDNVQILSAKPAN 51 (90) T ss_dssp EEEEEEEEECTTSCEEEEEEEEEESSS T ss_pred EEEEEEEEEECCCCEEEEEEEECCCCH T ss_conf 799999999389989689999888965 No 24 >d2chra2 d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} Probab=26.45 E-value=13 Score=13.17 Aligned_cols=38 Identities=13% Similarity=0.022 Sum_probs=25.3 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8987409898785544312123448889999999999983 Q gi|254780855|r 49 TEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLL 88 (396) Q Consensus 49 fE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~a~ 88 (396) +...|.|+++.+...+.++++.-+... -.+.-|+|.|+ T Consensus 71 l~p~lig~~~~~~~~~~~~~~~~~~~~--~~A~aaid~Al 108 (126) T d2chra2 71 LAPHLLGTDAFNVSGALQTMARAVTGN--ASAKAAVEMAL 108 (126) T ss_dssp THHHHTTSCTTCHHHHHHHHHTTCSSC--HHHHHHHHHHH T ss_pred HCCCCCCCCCCCHHHHHHHHHHCCCCC--HHHHHHHHHHH T ss_conf 450101346012999999865302443--28899999999 No 25 >d1o98a1 c.105.1.1 (A:77-310) 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain {Bacillus stearothermophilus [TaxId: 1422]} Probab=24.94 E-value=14 Score=12.99 Aligned_cols=67 Identities=13% Similarity=-0.063 Sum_probs=25.3 Q ss_pred HHHHHHHHHHHHH---------------HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHH Q ss_conf 9988999874334---------------3056418999999999999789975597647633653620007898999999 Q gi|254780855|r 109 ILSHLLNVTTQAM---------------DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDI 173 (396) Q Consensus 109 i~sH~~h~~~l~~---------------~~~~~~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~~~~~~~~~~ 173 (396) +|||+-|++.|.. .+|....-..+...-++..+.+...+.-.+-.+.-+==.+-++-.++..+.. T Consensus 46 VHSh~~Hl~al~~~a~~~gv~~V~iH~~~DGRDt~p~s~~~~l~~l~~~~~~~~~~~IASv~GRyyaMDRD~rWeR~~~a 125 (234) T d1o98a1 46 VHSHIHHLYALLRLAAKEGVKRVYIHGFLDGRDVGPQTAPQYIKELQEKIKEYGVGEIATLSGRYYSMDRDKRWDRVEKA 125 (234) T ss_dssp SSCCHHHHHHHHHHHHHTTCCCEEEEEEECSSSSCTTCHHHHHHHHHHHHHHHTCCEEEEEEEHHHHTCCSCCHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCEECCCCCCHHHHHHH T ss_conf 33415778999999997088741789973377888246899999999975314643687760643421555668899999 Q ss_pred HH Q ss_conf 99 Q gi|254780855|r 174 GC 175 (396) Q Consensus 174 ~~ 175 (396) .. T Consensus 126 y~ 127 (234) T d1o98a1 126 YR 127 (234) T ss_dssp HH T ss_pred HH T ss_conf 99 No 26 >d1yeya2 d.54.1.1 (A:2-140) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]} Probab=21.32 E-value=16 Score=12.51 Aligned_cols=47 Identities=9% Similarity=0.023 Sum_probs=27.5 Q ss_pred EEEEEEEECC--EEEEEEEEE-C-C------CHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 5999998399--899999880-4-1------15788987409898785544312123 Q gi|254780855|r 24 LRLILELDGE--IVERVDPHI-G-L------LHRGTEKLIETKTFLQAVPYFDRLDY 70 (396) Q Consensus 24 l~~~~~v~~~--~V~~a~~~~-g-~------~~RGfE~il~Gr~~~da~~it~RICG 70 (396) .-++++.|++ ..-.+.... + + +.+.|...+.|++|.+...+-+++-- T Consensus 34 ~~V~i~td~g~~g~G~~~~~~~~~~~~~~~~~~~~l~p~liG~~~~~~~~~~~~~~~ 90 (139) T d1yeya2 34 AYVVLRTDGAEDLAGYGLVFTIGRGNDVQTAAVAALAEHVVGLSVDKVIADLGAFAR 90 (139) T ss_dssp EEEEEEESSCTTCEEEEEEEECSTTHHHHHHHHHTTHHHHTTCBHHHHHHCHHHHHH T ss_pred EEEEEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH T ss_conf 589999989995799998706787179999999999998518772128888999998 No 27 >d1ah9a_ b.40.4.5 (A:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]} Probab=20.95 E-value=17 Score=12.46 Aligned_cols=40 Identities=13% Similarity=0.142 Sum_probs=26.8 Q ss_pred CCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCC Q ss_conf 686866677559999983998999998804115788987409 Q gi|254780855|r 14 GPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIET 55 (396) Q Consensus 14 gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~G 55 (396) |-+. ...|..++++.++|+..+-|.++ |-|-+.--+++.| T Consensus 10 G~V~-e~lg~~~f~V~l~ng~~~~a~i~-Gkmrk~ri~i~~G 49 (71) T d1ah9a_ 10 GTVL-ETLPNTMFRVELENGHVVTAHIS-GKMRKNYIRILTG 49 (71) T ss_dssp EEEE-EECSSSEEEEEETTSCEEEEEEC-SSGGGTTCCCCTT T ss_pred EEEE-EECCCCEEEEEECCCCEEEEECC-CHHHEEEEEECCC T ss_conf 9999-98699889999679979999846-4343027996499 Done!