BLAST/PSIBLAST alignment of GI: 254780855 and GI: 209548865 at iteration 1
>gi|209548865|ref|YP_002280782.1| NADH dehydrogenase subunit D [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 396
>gi|229891299|sp|B5ZYL5|NUOD_RHILW RecName: Full=NADH-quinone oxidoreductase subunit D; AltName: Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1 subunit D Length = 396
>gi|209534621|gb|ACI54556.1| NADH dehydrogenase I, D subunit [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 396
 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/396 (85%), Positives = 369/396 (93%)

Query: 1   MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
           M +   R+F INFGPQHPAAHGVLRL+LELDGEIVERVDPHIGLLHRGTEKLIETKT+LQ
Sbjct: 1   MTEHNVRNFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIETKTYLQ 60

Query: 61  AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
           AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA
Sbjct: 61  AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120

Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
           MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAY RPGGVHQD+P +LV+DIG WCD F
Sbjct: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYVRPGGVHQDLPEQLVQDIGDWCDPF 180

Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
             AL+DI +LLTGNRIFKQRNV+IG V LED W WGFSGVM+RGSGAAWDLR+SQPYECY
Sbjct: 181 LKALDDIDNLLTGNRIFKQRNVDIGVVSLEDCWAWGFSGVMVRGSGAAWDLRRSQPYECY 240

Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
           S+L+FDIPIGK+GD YDRYL+RM+EMR+SV+I++QCVNRLL   K GP S+ D K+VPPK
Sbjct: 241 SDLEFDIPIGKNGDNYDRYLIRMIEMRQSVRIMKQCVNRLLSDAKTGPFSSIDGKVVPPK 300

Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
           R +MKRSME+LIHHFKLYTEGYHVP GEVYAAVEAPKGEFGVYL+SDG NKPYRCKIRAP
Sbjct: 301 RGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYLVSDGSNKPYRCKIRAP 360

Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
           GYAHLQAM+F+C+GHQLADV+A+LGSLDIVFGEVDR
Sbjct: 361 GYAHLQAMDFMCRGHQLADVAAVLGSLDIVFGEVDR 396