PSIBLAST alignment of GI: 254780855 and protein with PDB id: 1e3d
>gi|14719751|pdb|1E3D|B Chain B, [nife] Hydrogenase From Desulfovibrio Desulfuricans Atcc 27774 Length = 542
>gi|14719753|pdb|1E3D|D Chain D, [nife] Hydrogenase From Desulfovibrio Desulfuricans Atcc 27774 Length = 542
Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats.
Identities = 49/356 (13%), Positives = 88/356 (24%), Gaps = 75/356 (21%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDI--PPEL 169
H ++ L + ++ H + GGV PE
Sbjct: 185 HEGYYMDPEANLVCTAHYLQALRAQVEVAKGMAVFGAKNPHTQFTVAGGVTCYEALTPER 244
Query: 170 VEDIGCWCDSFPSALNDIS--DLLTGNRIFKQRNVNIGTVKLE----------------D 211
++ + + ++ DLL +K GT
Sbjct: 245 IKQFRELYVKARAFIEEVYIPDLLLVASYYKDWGKIGGTNNFMAFGEFPAPGGERDLNSR 304
Query: 212 AWGWGFSGVMIRGSGAAWDLRKSQ--------------PYECYSELDFDIPIGKHGDCYD 257
+ G GS +D K + P+E + F ++
Sbjct: 305 WYKPGVIYDRKVGSVQPFDPSKIEEHVRHSWYEGKARAPFEGETNPHFTFMGDTDKYSWN 364
Query: 258 RYLVRMMEMRESVKIIRQCVNRL-------------LGKNKVGPVSASDPKIVPPKRAD- 303
+ E+ + + V LGK +GP + R
Sbjct: 365 KAPRYDGHAVETGPLAQMLVAYGHNHKTIKPTIDAVLGKLNLGPEALFSTLGRTAARGIQ 424
Query: 304 -------MKRSM---ESLIHHFKLYTEGYHVP-VGEVYAAVEAPKGEFGVYLISDGGNKP 352
M+ + E+ I K E Y VP + +G ++ K
Sbjct: 425 TLVIAQQMENWLNEYENNIVKDKQIVEDYAVPTSARGVGFADVSRGGLSHWMTI-EDGKI 483
Query: 353 YRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
++ P +L A E G +AD + + S D
Sbjct: 484 DNFQLVVPTTWNLGPRDDKGVPSAAEAALVGTPVADPKRPVEILRTIHSFDPCIAC 539