PSIBLAST alignment of GI: 254780855 and protein with PDB id: 1e3d

>gi|14719751|pdb|1E3D|B Chain B, [nife] Hydrogenase From Desulfovibrio Desulfuricans Atcc 27774 Length = 542
>gi|14719753|pdb|1E3D|D Chain D, [nife] Hydrogenase From Desulfovibrio Desulfuricans Atcc 27774 Length = 542
 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 49/356 (13%), Positives = 88/356 (24%), Gaps = 75/356 (21%)

Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDI--PPEL 169
           H         ++      L     + ++            H  +   GGV       PE 
Sbjct: 185 HEGYYMDPEANLVCTAHYLQALRAQVEVAKGMAVFGAKNPHTQFTVAGGVTCYEALTPER 244

Query: 170 VEDIGCWCDSFPSALNDIS--DLLTGNRIFKQRNVNIGTVKLE----------------D 211
           ++          + + ++   DLL     +K      GT                     
Sbjct: 245 IKQFRELYVKARAFIEEVYIPDLLLVASYYKDWGKIGGTNNFMAFGEFPAPGGERDLNSR 304

Query: 212 AWGWGFSGVMIRGSGAAWDLRKSQ--------------PYECYSELDFDIPIGKHGDCYD 257
            +  G       GS   +D  K +              P+E  +   F          ++
Sbjct: 305 WYKPGVIYDRKVGSVQPFDPSKIEEHVRHSWYEGKARAPFEGETNPHFTFMGDTDKYSWN 364

Query: 258 RYLVRMMEMRESVKIIRQCVNRL-------------LGKNKVGPVSASDPKIVPPKRAD- 303
           +         E+  + +  V                LGK  +GP +          R   
Sbjct: 365 KAPRYDGHAVETGPLAQMLVAYGHNHKTIKPTIDAVLGKLNLGPEALFSTLGRTAARGIQ 424

Query: 304 -------MKRSM---ESLIHHFKLYTEGYHVP-VGEVYAAVEAPKGEFGVYLISDGGNKP 352
                  M+  +   E+ I   K   E Y VP         +  +G    ++      K 
Sbjct: 425 TLVIAQQMENWLNEYENNIVKDKQIVEDYAVPTSARGVGFADVSRGGLSHWMTI-EDGKI 483

Query: 353 YRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
              ++  P   +L          A E    G  +AD      +   + S D     
Sbjct: 484 DNFQLVVPTTWNLGPRDDKGVPSAAEAALVGTPVADPKRPVEILRTIHSFDPCIAC 539