PSIBLAST alignment of GI: 254780855 and protein with PDB id: 1yq9

>gi|66361138|pdb|1YQ9|H Chain H, Structure Of The Unready Oxidized Form Of [nife] Hydrogenase Length = 536
>gi|66361140|pdb|1YQ9|I Chain I, Structure Of The Unready Oxidized Form Of [nife] Hydrogenase Length = 536
 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 71/519 (13%), Positives = 130/519 (25%), Gaps = 147/519 (28%)

Query: 20  AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
             G LR+ +E++G  ++     +  L RG E +++ +    A  +  R   V       A
Sbjct: 17  IEGHLRIEVEVEGGKIKNA-WSMSTLFRGLEMILKGRDPRDAQHFTQRACGVCTYVHALA 75

Query: 80  YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV------GALTPPLWGF 133
              AV+  +G++IP    L+R L      +  HL++                   P    
Sbjct: 76  SVRAVDNCVGVKIPENATLMRNLTMGAQYMHDHLVHFYHLHALDWVNVANALNADPAKAA 135

Query: 134 EE------REKLMVFYERASGS-------------------RMHAAYFRPGGVHQDIPPE 168
                   R+      +                          H AY  P  V       
Sbjct: 136 RLANDLSPRKTTTESLKAVQAKVKALVESGQLGIFTNAYFLGGHPAYVLPAEVDLIATAH 195

Query: 169 LVEDIGCWCDSFPSALND------------------------------------------ 186
            +E +     +  +                                              
Sbjct: 196 YLEALRVQVKAARAMAIFGAKNPHTQFTVVGGCTNYDSLRPERIAEFRKLYKEVREFIEQ 255

Query: 187 -ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGS-----GAAWD---------- 230
                L     F +    IG        G   +      S     G  W           
Sbjct: 256 VYITDLLAVAGFYKNWAGIGKTSNFLTCGEFPTDEYDLNSRYTPQGVIWGNDLSKVDDFN 315

Query: 231 ---LRKSQPYECYSELD------------FDIPIGKHGDCYDRYLVRMMEMRESVKI--- 272
              + +   Y  Y   D            +    G+    + +      E  E   +   
Sbjct: 316 PDLIEEHVKYSWYEGADAHHPYKGVTKPKWTEFHGEDRYSWMKAPRYKGEAFEVGPLASV 375

Query: 273 ----------IRQCVNRLLGKNKVGPVSASDPKIVPPKRA--------DMKRSMESLIHH 314
                       + V+ +L    VGP +          R         +++  ++ L  +
Sbjct: 376 LVAYAKKHEPTVKAVDLVLKTLGVGPEALFSTLGRTAARGIQCLTAAQEVEVWLDKLEAN 435

Query: 315 FK-----LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH----- 364
            K     LYT+  +    +    V AP+G    +++  G  K    ++  P   +     
Sbjct: 436 VKAGKDDLYTDWQYPTESQGVGFVNAPRGMLSHWIVQRG-GKIENFQLVVPSTWNLGPRC 494

Query: 365 ----LQAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
               L A+E    G  +AD      +   + S D     
Sbjct: 495 AEGKLSAVEQALIGTPIADPKRPVEILRTVHSYDPCIAC 533