PSIBLAST alignment of GI: 254780855 and protein with PDB id: 1yq9
>gi|66361138|pdb|1YQ9|H Chain H, Structure Of The Unready Oxidized Form Of [nife] Hydrogenase Length = 536
>gi|66361140|pdb|1YQ9|I Chain I, Structure Of The Unready Oxidized Form Of [nife] Hydrogenase Length = 536
Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats.
Identities = 71/519 (13%), Positives = 130/519 (25%), Gaps = 147/519 (28%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E++G ++ + L RG E +++ + A + R V A
Sbjct: 17 IEGHLRIEVEVEGGKIKNA-WSMSTLFRGLEMILKGRDPRDAQHFTQRACGVCTYVHALA 75
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV------GALTPPLWGF 133
AV+ +G++IP L+R L + HL++ P
Sbjct: 76 SVRAVDNCVGVKIPENATLMRNLTMGAQYMHDHLVHFYHLHALDWVNVANALNADPAKAA 135
Query: 134 EE------REKLMVFYERASGS-------------------RMHAAYFRPGGVHQDIPPE 168
R+ + H AY P V
Sbjct: 136 RLANDLSPRKTTTESLKAVQAKVKALVESGQLGIFTNAYFLGGHPAYVLPAEVDLIATAH 195
Query: 169 LVEDIGCWCDSFPSALND------------------------------------------ 186
+E + + +
Sbjct: 196 YLEALRVQVKAARAMAIFGAKNPHTQFTVVGGCTNYDSLRPERIAEFRKLYKEVREFIEQ 255
Query: 187 -ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGS-----GAAWD---------- 230
L F + IG G + S G W
Sbjct: 256 VYITDLLAVAGFYKNWAGIGKTSNFLTCGEFPTDEYDLNSRYTPQGVIWGNDLSKVDDFN 315
Query: 231 ---LRKSQPYECYSELD------------FDIPIGKHGDCYDRYLVRMMEMRESVKI--- 272
+ + Y Y D + G+ + + E E +
Sbjct: 316 PDLIEEHVKYSWYEGADAHHPYKGVTKPKWTEFHGEDRYSWMKAPRYKGEAFEVGPLASV 375
Query: 273 ----------IRQCVNRLLGKNKVGPVSASDPKIVPPKRA--------DMKRSMESLIHH 314
+ V+ +L VGP + R +++ ++ L +
Sbjct: 376 LVAYAKKHEPTVKAVDLVLKTLGVGPEALFSTLGRTAARGIQCLTAAQEVEVWLDKLEAN 435
Query: 315 FK-----LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH----- 364
K LYT+ + + V AP+G +++ G K ++ P +
Sbjct: 436 VKAGKDDLYTDWQYPTESQGVGFVNAPRGMLSHWIVQRG-GKIENFQLVVPSTWNLGPRC 494
Query: 365 ----LQAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
L A+E G +AD + + S D
Sbjct: 495 AEGKLSAVEQALIGTPIADPKRPVEILRTVHSYDPCIAC 533