BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780855|ref|YP_003065268.1| NADH dehydrogenase subunit D
[Candidatus Liberibacter asiaticus str. psy62]
(396 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|254780855|ref|YP_003065268.1| NADH dehydrogenase subunit D [Candidatus Liberibacter asiaticus
str. psy62]
gi|254040532|gb|ACT57328.1| NADH dehydrogenase subunit D [Candidatus Liberibacter asiaticus
str. psy62]
Length = 396
Score = 481 bits (1238), Expect = e-134, Method: Composition-based stats.
Identities = 396/396 (100%), Positives = 396/396 (100%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ
Sbjct: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA
Sbjct: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF
Sbjct: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY
Sbjct: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK
Sbjct: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP
Sbjct: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR
Sbjct: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
>gi|239831689|ref|ZP_04680018.1| NADH dehydrogenase I, D subunit [Ochrobactrum intermedium LMG 3301]
gi|239823956|gb|EEQ95524.1| NADH dehydrogenase I, D subunit [Ochrobactrum intermedium LMG 3301]
Length = 404
Score = 475 bits (1224), Expect = e-132, Method: Composition-based stats.
Identities = 328/396 (82%), Positives = 367/396 (92%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + + R+F INFGPQHPAAHGVLRL+LELDGE+VERVDPHIGLLHRGTEKL+E KT+LQ
Sbjct: 9 MAETQVRNFNINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLMEAKTYLQ 68
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PY DRLDYVAPMNQEHAYALAVE+LLGI++P RGQLIRVLYSEIGRIL+HLLNVTTQA
Sbjct: 69 ALPYLDRLDYVAPMNQEHAYALAVERLLGIDVPKRGQLIRVLYSEIGRILNHLLNVTTQA 128
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLMVFYERA G+RMHAAYFRPGGVHQD+P +LVEDIG W D F
Sbjct: 129 MDVGALTPPLWGFEEREKLMVFYERACGARMHAAYFRPGGVHQDLPDQLVEDIGKWIDPF 188
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
LN++ DL+T NRIFKQRNV+IG VKLEDAW WGFSGVM+RGSGAAWDLRKSQPYECY
Sbjct: 189 FKTLNNLDDLITPNRIFKQRNVDIGVVKLEDAWAWGFSGVMVRGSGAAWDLRKSQPYECY 248
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+E++FDIP+GK+GDCYDRYL+RM EMR+S KI+RQCV+ LLGK +VGPVS +D KIVPPK
Sbjct: 249 NEMEFDIPVGKNGDCYDRYLIRMEEMRQSAKIMRQCVDLLLGKERVGPVSNADNKIVPPK 308
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MKRSME+LIHHFKLYTEGYHVP GEVYAAVEAPKGEFGV+L+SDG NKPYRCK+RAP
Sbjct: 309 RGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVFLVSDGSNKPYRCKLRAP 368
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHLQAM+FLC+GH LADVSAILGSLDIVFGEVDR
Sbjct: 369 GFAHLQAMDFLCRGHMLADVSAILGSLDIVFGEVDR 404
>gi|254718914|ref|ZP_05180725.1| NADH dehydrogenase subunit D [Brucella sp. 83/13]
gi|265983901|ref|ZP_06096636.1| NADH-quinone oxidoreductase subunit D [Brucella sp. 83/13]
gi|306838238|ref|ZP_07471090.1| NADH dehydrogenase I, D subunit [Brucella sp. NF 2653]
gi|306841957|ref|ZP_07474634.1| NADH dehydrogenase I, D subunit [Brucella sp. BO2]
gi|306843742|ref|ZP_07476341.1| NADH dehydrogenase I, D subunit [Brucella sp. BO1]
gi|264662493|gb|EEZ32754.1| NADH-quinone oxidoreductase subunit D [Brucella sp. 83/13]
gi|306275933|gb|EFM57646.1| NADH dehydrogenase I, D subunit [Brucella sp. BO1]
gi|306287948|gb|EFM59359.1| NADH dehydrogenase I, D subunit [Brucella sp. BO2]
gi|306406682|gb|EFM62909.1| NADH dehydrogenase I, D subunit [Brucella sp. NF 2653]
Length = 396
Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats.
Identities = 329/396 (83%), Positives = 367/396 (92%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + + R+F INFGPQHPAAHGVLRL+LELDGE+VERVDPHIGLLHRGTEKL+E KT+LQ
Sbjct: 1 MAETQVRNFNINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLMEAKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVPY DRLDYVAPMNQEHAYALAVE+LLGIE+P RGQLIRVLYSEIGRIL+HLLNVTTQA
Sbjct: 61 AVPYLDRLDYVAPMNQEHAYALAVERLLGIEVPKRGQLIRVLYSEIGRILNHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLMVFYERA G+RMHAAYFRPGGVHQD+P +L+EDIG W D F
Sbjct: 121 MDVGALTPPLWGFEEREKLMVFYERACGARMHAAYFRPGGVHQDLPDQLIEDIGKWIDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ L ++ DL+T NRIFKQRNV+IG VKLEDAW WGFSGVM+RGSGAAWDLRKSQPYECY
Sbjct: 181 FTTLKNLDDLITPNRIFKQRNVDIGVVKLEDAWAWGFSGVMVRGSGAAWDLRKSQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
SE++FDIP+GK+GDCYDRYL+RM EMR+S +I+RQCV+ LLGK +VGPVS +D KIVPPK
Sbjct: 241 SEMEFDIPVGKNGDCYDRYLIRMEEMRQSARIMRQCVDLLLGKERVGPVSNTDHKIVPPK 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MKRSME+LIHHFKLYTEGYHVP GEVYAAVEAPKGEFGVYL+SDG NKPYRCK+RAP
Sbjct: 301 RGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYLVSDGSNKPYRCKLRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHLQAM+FLC+GH LADVSAILGSLDIVFGEVDR
Sbjct: 361 GFAHLQAMDFLCRGHMLADVSAILGSLDIVFGEVDR 396
>gi|256060917|ref|ZP_05451075.1| NADH dehydrogenase subunit D [Brucella neotomae 5K33]
gi|261324917|ref|ZP_05964114.1| NADH-quinone oxidoreductase subunit D [Brucella neotomae 5K33]
gi|261300897|gb|EEY04394.1| NADH-quinone oxidoreductase subunit D [Brucella neotomae 5K33]
Length = 396
Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats.
Identities = 329/396 (83%), Positives = 367/396 (92%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + + R+F INFGPQHPAAHGVLRL+LELDGE+VERVDPHIGLLHRGTEKL+E KT+LQ
Sbjct: 1 MAETQVRNFNINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLMEAKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVPY DRLDYVAPMNQEHAYALAVE+LL IE+P RGQLIRVLYSEIGRIL+HLLNVTTQA
Sbjct: 61 AVPYLDRLDYVAPMNQEHAYALAVERLLDIEVPKRGQLIRVLYSEIGRILNHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLMVFYERA G+RMHAAYFRPGGVHQD+P +L+EDIG W DSF
Sbjct: 121 MDVGALTPPLWGFEEREKLMVFYERACGARMHAAYFRPGGVHQDLPDQLIEDIGKWIDSF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ L ++ DL+T NRIFKQRNV+IG VKLEDAW WGFSGVM+RGSGAAWDLRKSQPYECY
Sbjct: 181 FTTLKNLDDLITPNRIFKQRNVDIGVVKLEDAWAWGFSGVMVRGSGAAWDLRKSQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
SE++FDIP+GK+GDCYDRYL+RM EMR+S +I+RQCV+ LLGK +VGPVS +D KIVPPK
Sbjct: 241 SEMEFDIPVGKNGDCYDRYLIRMEEMRQSARIMRQCVDLLLGKERVGPVSNTDHKIVPPK 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MKRSME+LIHHFKLYTEGYHVP GEVYAAVEAPKGEFGVYL+SDG NKPYRCK+RAP
Sbjct: 301 RGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYLVSDGSNKPYRCKLRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHLQAM+FLC+GH LADVSAILGSLDIVFGEVDR
Sbjct: 361 GFAHLQAMDFLCRGHMLADVSAILGSLDIVFGEVDR 396
>gi|110633379|ref|YP_673587.1| NADH dehydrogenase subunit D [Mesorhizobium sp. BNC1]
gi|123162556|sp|Q11JK3|NUOD_MESSB RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|110284363|gb|ABG62422.1| NADH dehydrogenase subunit D [Chelativorans sp. BNC1]
Length = 396
Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats.
Identities = 325/396 (82%), Positives = 364/396 (91%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + R+F INFGPQHPAAHGVLRL+LELDGE+VERVDPHIGLLHRGTEKLIE KT+LQ
Sbjct: 1 MAETSIRNFNINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEYKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYVAPMNQEHA+ALA+E+LLGI++PIRGQLIRVLYSEI RIL+HLLN+TTQA
Sbjct: 61 AIPYFDRLDYVAPMNQEHAFALAIERLLGIDVPIRGQLIRVLYSEISRILNHLLNITTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLMVFYERASG+RMHAAYFRPGGVHQD+P +LVEDIG W D F
Sbjct: 121 MDVGALTPPLWGFEEREKLMVFYERASGARMHAAYFRPGGVHQDLPEKLVEDIGKWIDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
++D+ +LLT NRIFKQRN +IG V LEDAW WGFSGVM+RGSGAAWDLRKSQPYECY
Sbjct: 181 LKTVDDLDELLTENRIFKQRNADIGIVSLEDAWAWGFSGVMVRGSGAAWDLRKSQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E+DFDIP+GK+GDCYDRYL+RM EMR+S KI+RQCV RLLGK +VGPVS D K+VPPK
Sbjct: 241 PEMDFDIPVGKNGDCYDRYLIRMEEMRQSAKIMRQCVERLLGKERVGPVSNMDGKVVPPK 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
RA MKRSMESLIHHFKLYTEGYHVP GEVYAAVEAPKGEFGVYL++DG NKPYRCK+RAP
Sbjct: 301 RAAMKRSMESLIHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYLVADGTNKPYRCKLRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHLQAM+F+C+GH LADV+A+LGSLDIVFGEVDR
Sbjct: 361 GFAHLQAMDFMCRGHLLADVTAVLGSLDIVFGEVDR 396
>gi|17987438|ref|NP_540072.1| NADH dehydrogenase subunit D [Brucella melitensis bv. 1 str. 16M]
gi|256044484|ref|ZP_05447388.1| NADH dehydrogenase subunit D [Brucella melitensis bv. 1 str. Rev.1]
gi|260563838|ref|ZP_05834324.1| NADH-quinone oxidoreductase subunit D [Brucella melitensis bv. 1
str. 16M]
gi|265990908|ref|ZP_06103465.1| NADH-quinone oxidoreductase subunit D [Brucella melitensis bv. 1
str. Rev.1]
gi|81851726|sp|Q8YGK3|NUOD_BRUME RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|17983131|gb|AAL52336.1| NADH-quinone oxidoreductase chain d [Brucella melitensis bv. 1 str.
16M]
gi|260153854|gb|EEW88946.1| NADH-quinone oxidoreductase subunit D [Brucella melitensis bv. 1
str. 16M]
gi|263001692|gb|EEZ14267.1| NADH-quinone oxidoreductase subunit D [Brucella melitensis bv. 1
str. Rev.1]
Length = 396
Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats.
Identities = 329/396 (83%), Positives = 367/396 (92%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + + R+F INFGPQHPAAHGVLRL+LELDGE+VERVDPHIGLLHRGTEKL+E KT+LQ
Sbjct: 1 MAETQVRNFNINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLMEAKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVPY DRLDYVAPMNQEHAYALAVE+LL IE+P RGQLIRVLYSEIGRIL+HLLNVTTQA
Sbjct: 61 AVPYLDRLDYVAPMNQEHAYALAVERLLDIEVPKRGQLIRVLYSEIGRILNHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLMVFYERA G+RMHAAYFRPGGVHQD+P +L+EDIG W D F
Sbjct: 121 MDVGALTPPLWGFEEREKLMVFYERACGARMHAAYFRPGGVHQDLPDQLIEDIGKWIDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ L ++ DL+T NRIFKQRNV+IG VKLEDAW WGFSGVM+RGSGAAWDLRKSQPYECY
Sbjct: 181 FTTLKNLDDLITPNRIFKQRNVDIGVVKLEDAWAWGFSGVMVRGSGAAWDLRKSQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
SE++FDIP+GK+GDCYDRYL+RM EMR+SV+I+RQCV+ LLGK +VGPVS +D KIVPPK
Sbjct: 241 SEMEFDIPVGKNGDCYDRYLIRMEEMRQSVRIMRQCVDLLLGKERVGPVSNTDHKIVPPK 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MKRSME+LIHHFKLYTEGYHVP GEVYAAVEAPKGEFGVYL+SDG NKPYRCK+RAP
Sbjct: 301 RGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYLVSDGSNKPYRCKLRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHLQAM+FLC+GH LADVSAILGSLDIVFGEVDR
Sbjct: 361 GFAHLQAMDFLCRGHMLADVSAILGSLDIVFGEVDR 396
>gi|148558949|ref|YP_001258783.1| NADH dehydrogenase subunit D [Brucella ovis ATCC 25840]
gi|161618769|ref|YP_001592656.1| NADH dehydrogenase subunit D [Brucella canis ATCC 23365]
gi|163843078|ref|YP_001627482.1| NADH dehydrogenase subunit D [Brucella suis ATCC 23445]
gi|225627302|ref|ZP_03785339.1| NADH dehydrogenase I, D subunit [Brucella ceti str. Cudo]
gi|225852321|ref|YP_002732554.1| NADH dehydrogenase subunit D [Brucella melitensis ATCC 23457]
gi|254689061|ref|ZP_05152315.1| NADH dehydrogenase subunit D [Brucella abortus bv. 6 str. 870]
gi|254693543|ref|ZP_05155371.1| NADH dehydrogenase subunit D [Brucella abortus bv. 3 str. Tulya]
gi|254701573|ref|ZP_05163401.1| NADH dehydrogenase subunit D [Brucella suis bv. 5 str. 513]
gi|254704120|ref|ZP_05165948.1| NADH dehydrogenase subunit D [Brucella suis bv. 3 str. 686]
gi|254706980|ref|ZP_05168808.1| NADH dehydrogenase subunit D [Brucella pinnipedialis M163/99/10]
gi|254709913|ref|ZP_05171724.1| NADH dehydrogenase subunit D [Brucella pinnipedialis B2/94]
gi|254713914|ref|ZP_05175725.1| NADH dehydrogenase subunit D [Brucella ceti M644/93/1]
gi|254717028|ref|ZP_05178839.1| NADH dehydrogenase subunit D [Brucella ceti M13/05/1]
gi|256031406|ref|ZP_05445020.1| NADH dehydrogenase subunit D [Brucella pinnipedialis M292/94/1]
gi|256159527|ref|ZP_05457295.1| NADH dehydrogenase subunit D [Brucella ceti M490/95/1]
gi|256254814|ref|ZP_05460350.1| NADH dehydrogenase subunit D [Brucella ceti B1/94]
gi|256257310|ref|ZP_05462846.1| NADH dehydrogenase subunit D [Brucella abortus bv. 9 str. C68]
gi|256264180|ref|ZP_05466712.1| pectinesterase [Brucella melitensis bv. 2 str. 63/9]
gi|256369237|ref|YP_003106745.1| NADH dehydrogenase delta subunit [Brucella microti CCM 4915]
gi|260168540|ref|ZP_05755351.1| NADH dehydrogenase subunit D [Brucella sp. F5/99]
gi|260566631|ref|ZP_05837101.1| NADH-quinone oxidoreductase subunit D [Brucella suis bv. 4 str. 40]
gi|260754559|ref|ZP_05866907.1| NADH dehydrogenase subunit D [Brucella abortus bv. 6 str. 870]
gi|260883586|ref|ZP_05895200.1| NADH-quinone oxidoreductase subunit D [Brucella abortus bv. 9 str.
C68]
gi|261213808|ref|ZP_05928089.1| NADH dehydrogenase subunit D [Brucella abortus bv. 3 str. Tulya]
gi|261218835|ref|ZP_05933116.1| NADH-quinone oxidoreductase subunit D [Brucella ceti M13/05/1]
gi|261221995|ref|ZP_05936276.1| NADH-quinone oxidoreductase subunit D [Brucella ceti B1/94]
gi|261314443|ref|ZP_05953640.1| NADH-quinone oxidoreductase subunit D [Brucella pinnipedialis
M163/99/10]
gi|261317459|ref|ZP_05956656.1| NADH-quinone oxidoreductase subunit D [Brucella pinnipedialis
B2/94]
gi|261321666|ref|ZP_05960863.1| NADH-quinone oxidoreductase subunit D [Brucella ceti M644/93/1]
gi|261752126|ref|ZP_05995835.1| NADH-quinone oxidoreductase subunit D [Brucella suis bv. 5 str.
513]
gi|261754786|ref|ZP_05998495.1| NADH-quinone oxidoreductase subunit D [Brucella suis bv. 3 str.
686]
gi|261758013|ref|ZP_06001722.1| NADH dehydrogenase subunit D [Brucella sp. F5/99]
gi|265988495|ref|ZP_06101052.1| NADH-quinone oxidoreductase subunit D [Brucella pinnipedialis
M292/94/1]
gi|265997959|ref|ZP_06110516.1| NADH-quinone oxidoreductase subunit D [Brucella ceti M490/95/1]
gi|297248159|ref|ZP_06931877.1| NADH dehydrogenase (quinone), D subunit [Brucella abortus bv. 5
str. B3196]
gi|218534393|sp|A9MAI2|NUOD_BRUC2 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|218534394|sp|A5VPY6|NUOD_BRUO2 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|218534395|sp|B0CLD2|NUOD_BRUSI RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|148370206|gb|ABQ60185.1| NADH dehydrogenase I, D subunit [Brucella ovis ATCC 25840]
gi|161335580|gb|ABX61885.1| NADH dehydrogenase I, D subunit [Brucella canis ATCC 23365]
gi|163673801|gb|ABY37912.1| NADH dehydrogenase I, D subunit [Brucella suis ATCC 23445]
gi|225617307|gb|EEH14352.1| NADH dehydrogenase I, D subunit [Brucella ceti str. Cudo]
gi|225640686|gb|ACO00600.1| NADH dehydrogenase I, D subunit [Brucella melitensis ATCC 23457]
gi|255999397|gb|ACU47796.1| NADH dehydrogenase delta subunit [Brucella microti CCM 4915]
gi|260156149|gb|EEW91229.1| NADH-quinone oxidoreductase subunit D [Brucella suis bv. 4 str. 40]
gi|260674667|gb|EEX61488.1| NADH dehydrogenase subunit D [Brucella abortus bv. 6 str. 870]
gi|260873114|gb|EEX80183.1| NADH-quinone oxidoreductase subunit D [Brucella abortus bv. 9 str.
C68]
gi|260915415|gb|EEX82276.1| NADH dehydrogenase subunit D [Brucella abortus bv. 3 str. Tulya]
gi|260920579|gb|EEX87232.1| NADH-quinone oxidoreductase subunit D [Brucella ceti B1/94]
gi|260923924|gb|EEX90492.1| NADH-quinone oxidoreductase subunit D [Brucella ceti M13/05/1]
gi|261294356|gb|EEX97852.1| NADH-quinone oxidoreductase subunit D [Brucella ceti M644/93/1]
gi|261296682|gb|EEY00179.1| NADH-quinone oxidoreductase subunit D [Brucella pinnipedialis
B2/94]
gi|261303469|gb|EEY06966.1| NADH-quinone oxidoreductase subunit D [Brucella pinnipedialis
M163/99/10]
gi|261737997|gb|EEY25993.1| NADH dehydrogenase subunit D [Brucella sp. F5/99]
gi|261741879|gb|EEY29805.1| NADH-quinone oxidoreductase subunit D [Brucella suis bv. 5 str.
513]
gi|261744539|gb|EEY32465.1| NADH-quinone oxidoreductase subunit D [Brucella suis bv. 3 str.
686]
gi|262552427|gb|EEZ08417.1| NADH-quinone oxidoreductase subunit D [Brucella ceti M490/95/1]
gi|263094398|gb|EEZ18243.1| pectinesterase [Brucella melitensis bv. 2 str. 63/9]
gi|264660692|gb|EEZ30953.1| NADH-quinone oxidoreductase subunit D [Brucella pinnipedialis
M292/94/1]
gi|297175328|gb|EFH34675.1| NADH dehydrogenase (quinone), D subunit [Brucella abortus bv. 5
str. B3196]
gi|326408828|gb|ADZ65893.1| NADH dehydrogenase subunit D [Brucella melitensis M28]
gi|326538544|gb|ADZ86759.1| NADH dehydrogenase I, D subunit [Brucella melitensis M5-90]
Length = 396
Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats.
Identities = 328/396 (82%), Positives = 366/396 (92%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + + R+F INFGPQHPAAHGVLRL+LELDGE+VERVDPHIGLLHRGTEKL+E KT+LQ
Sbjct: 1 MAETQVRNFNINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLMEAKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVPY DRLDYVAPMNQEHAYALAVE+LL IE+P RGQLIRVLYSEIGRIL+HLLNVTTQA
Sbjct: 61 AVPYLDRLDYVAPMNQEHAYALAVERLLDIEVPKRGQLIRVLYSEIGRILNHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLMVFYERA G+RMHAAYFRPGGVHQD+P +L+EDIG W D F
Sbjct: 121 MDVGALTPPLWGFEEREKLMVFYERACGARMHAAYFRPGGVHQDLPDQLIEDIGKWIDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ L ++ DL+T NRIFKQRNV+IG VKLEDAW WGFSGVM+RGSGAAWDLRKSQPYECY
Sbjct: 181 FTTLKNLDDLITPNRIFKQRNVDIGVVKLEDAWAWGFSGVMVRGSGAAWDLRKSQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
SE++FDIP+GK+GDCYDRYL+RM EMR+S +I+RQCV+ LLGK +VGPVS +D KIVPPK
Sbjct: 241 SEMEFDIPVGKNGDCYDRYLIRMEEMRQSARIMRQCVDLLLGKERVGPVSNTDHKIVPPK 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MKRSME+LIHHFKLYTEGYHVP GEVYAAVEAPKGEFGVYL+SDG NKPYRCK+RAP
Sbjct: 301 RGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYLVSDGSNKPYRCKLRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHLQAM+FLC+GH LADVSAILGSLDIVFGEVDR
Sbjct: 361 GFAHLQAMDFLCRGHMLADVSAILGSLDIVFGEVDR 396
>gi|294852162|ref|ZP_06792835.1| NADH dehydrogenase [Brucella sp. NVSL 07-0026]
gi|294820751|gb|EFG37750.1| NADH dehydrogenase [Brucella sp. NVSL 07-0026]
Length = 396
Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats.
Identities = 328/396 (82%), Positives = 366/396 (92%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + + R+F INFGPQHPAAHGVLRL+LELDGE+VERVDPHIGLLHRGTEKL+E KT+LQ
Sbjct: 1 MAETQVRNFNINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLMEAKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVPY DRLDYVAPMNQEHAYALAVE+LL IE+P RGQLIRVLYSEIGRIL+HLLNVTTQA
Sbjct: 61 AVPYLDRLDYVAPMNQEHAYALAVERLLDIEVPKRGQLIRVLYSEIGRILNHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLMVFYERA G+RMHAAYFRPGGVHQD+P +L+EDIG W D F
Sbjct: 121 MDVGALTPPLWGFEEREKLMVFYERACGARMHAAYFRPGGVHQDLPDQLIEDIGKWIDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ L ++ DL+T NRIFKQRNV+IG VKLEDAW WGFSGVM+RGSGAAWDLRKSQPYECY
Sbjct: 181 FTTLKNLHDLITPNRIFKQRNVDIGVVKLEDAWAWGFSGVMVRGSGAAWDLRKSQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
SE++FDIP+GK+GDCYDRYL+RM EMR+S +I+RQCV+ LLGK +VGPVS +D KIVPPK
Sbjct: 241 SEMEFDIPVGKNGDCYDRYLIRMEEMRQSARIMRQCVDLLLGKERVGPVSNTDHKIVPPK 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MKRSME+LIHHFKLYTEGYHVP GEVYAAVEAPKGEFGVYL+SDG NKPYRCK+RAP
Sbjct: 301 RGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYLVSDGSNKPYRCKLRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHLQAM+FLC+GH LADVSAILGSLDIVFGEVDR
Sbjct: 361 GFAHLQAMDFLCRGHMLADVSAILGSLDIVFGEVDR 396
>gi|62289754|ref|YP_221547.1| NADH dehydrogenase subunit D [Brucella abortus bv. 1 str. 9-941]
gi|82699682|ref|YP_414256.1| NADH dehydrogenase subunit D [Brucella melitensis biovar Abortus
2308]
gi|189023999|ref|YP_001934767.1| NADH dehydrogenase subunit D [Brucella abortus S19]
gi|237815241|ref|ZP_04594239.1| NADH dehydrogenase I, D subunit [Brucella abortus str. 2308 A]
gi|254697195|ref|ZP_05159023.1| NADH dehydrogenase subunit D [Brucella abortus bv. 2 str. 86/8/59]
gi|254730091|ref|ZP_05188669.1| NADH dehydrogenase subunit D [Brucella abortus bv. 4 str. 292]
gi|260545496|ref|ZP_05821237.1| pectinesterase [Brucella abortus NCTC 8038]
gi|260757780|ref|ZP_05870128.1| NADH dehydrogenase subunit D [Brucella abortus bv. 4 str. 292]
gi|260761605|ref|ZP_05873948.1| NADH dehydrogenase subunit D [Brucella abortus bv. 2 str. 86/8/59]
gi|75505303|sp|Q57DU8|NUOD_BRUAB RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|123546639|sp|Q2YNG0|NUOD_BRUA2 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|218534392|sp|B2S546|NUOD_BRUA1 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|62195886|gb|AAX74186.1| NuoD, NADH dehydrogenase I, D subunit [Brucella abortus bv. 1 str.
9-941]
gi|82615783|emb|CAJ10781.1| Pectinesterase:NADH-ubiquinone oxidoreductase, chain 49kDa
[Brucella melitensis biovar Abortus 2308]
gi|189019571|gb|ACD72293.1| Pectinesterase [Brucella abortus S19]
gi|237790078|gb|EEP64288.1| NADH dehydrogenase I, D subunit [Brucella abortus str. 2308 A]
gi|260096903|gb|EEW80778.1| pectinesterase [Brucella abortus NCTC 8038]
gi|260668098|gb|EEX55038.1| NADH dehydrogenase subunit D [Brucella abortus bv. 4 str. 292]
gi|260672037|gb|EEX58858.1| NADH dehydrogenase subunit D [Brucella abortus bv. 2 str. 86/8/59]
Length = 396
Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats.
Identities = 327/396 (82%), Positives = 365/396 (92%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + + R+F INFGPQHPAAHGVLRL+LELDGE+VERVDPHIGLLHRGTEKL+E KT+LQ
Sbjct: 1 MAETQVRNFNINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLMEAKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVPY DRLDYVAPMNQEHAYALAVE+LL IE+P RGQLIRVLYSEIGRIL+HLLNVTTQA
Sbjct: 61 AVPYLDRLDYVAPMNQEHAYALAVERLLDIEVPKRGQLIRVLYSEIGRILNHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLMVFYERA G+RMHAAYFRPGGVHQD+P +L+EDIG W D F
Sbjct: 121 MDVGALTPPLWGFEEREKLMVFYERACGARMHAAYFRPGGVHQDLPDQLIEDIGKWIDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ L ++ DL+T NRIFKQRNV+IG VKLEDAW WGFSGVM+RGSGAAWDLRKSQPYECY
Sbjct: 181 FTTLKNLDDLITPNRIFKQRNVDIGVVKLEDAWAWGFSGVMVRGSGAAWDLRKSQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
SE++FDIP+GK+GDCYDRYL+RM EMR+S +I+RQCV+ LLGK +VGPVS +D KIVPPK
Sbjct: 241 SEMEFDIPVGKNGDCYDRYLIRMEEMRQSARIMRQCVDLLLGKERVGPVSNTDHKIVPPK 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MKRSME+LIHHFKLYTEGYHVP GEVYAAVEAPKGEFGVYL+SDG NKPYR K+RAP
Sbjct: 301 RGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYLVSDGSNKPYRFKLRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHLQAM+FLC+GH LADVSAILGSLDIVFGEVDR
Sbjct: 361 GFAHLQAMDFLCRGHMLADVSAILGSLDIVFGEVDR 396
>gi|153009748|ref|YP_001370963.1| NADH dehydrogenase subunit D [Ochrobactrum anthropi ATCC 49188]
gi|218534436|sp|A6X1N0|NUOD_OCHA4 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|151561636|gb|ABS15134.1| NADH dehydrogenase I, D subunit [Ochrobactrum anthropi ATCC 49188]
Length = 396
Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats.
Identities = 328/396 (82%), Positives = 368/396 (92%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + + R+F INFGPQHPAAHGVLRL+LELDGE+VERVDPHIGLLHRGTEKL+E KT+LQ
Sbjct: 1 MAETQVRNFNINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLMEAKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PY DRLDYVAPMNQEHAYALAVE+LLGI++P RGQLIRVLYSEIGRIL+HLLNVTTQA
Sbjct: 61 ALPYLDRLDYVAPMNQEHAYALAVERLLGIDVPKRGQLIRVLYSEIGRILNHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLMVFYERA G+RMHAAYFRPGGVHQD+P +LVEDIG W D F
Sbjct: 121 MDVGALTPPLWGFEEREKLMVFYERACGARMHAAYFRPGGVHQDLPDQLVEDIGKWIDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ LN++ DL+T NRIFKQRNV+IG VKLEDAW WGFSGVM+RGSGAAWDLRKSQPYECY
Sbjct: 181 FNTLNNLDDLITPNRIFKQRNVDIGVVKLEDAWAWGFSGVMVRGSGAAWDLRKSQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+E++FDIPIGK+GDCYDRYL+RM EMR+S +I+RQCV+ LLGK +VGPVS +D KIVPPK
Sbjct: 241 NEMEFDIPIGKNGDCYDRYLIRMEEMRQSARIMRQCVDLLLGKERVGPVSNADNKIVPPK 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MKRSME+LIHHFKLYTEGYHVP GEVYAAVEAPKGEFGV+L+SDG NKPYRCK+RAP
Sbjct: 301 RGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVFLVSDGSNKPYRCKLRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHLQAM+FLC+GH LADVSAILGSLDIVFGEVDR
Sbjct: 361 GFAHLQAMDFLCRGHMLADVSAILGSLDIVFGEVDR 396
>gi|23501692|ref|NP_697819.1| NADH dehydrogenase subunit D [Brucella suis 1330]
gi|81752803|sp|Q8G1B4|NUOD_BRUSU RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|23347614|gb|AAN29734.1| NADH dehydrogenase I, D subunit [Brucella suis 1330]
Length = 396
Score = 471 bits (1213), Expect = e-131, Method: Composition-based stats.
Identities = 327/396 (82%), Positives = 365/396 (92%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + + R+F INFGPQHPAAHGVLRL+LELDGE+VERVDPHIGLLHRGTEKL+E KT+LQ
Sbjct: 1 MAETQVRNFNINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLMEAKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVPY DRLDYVAPMNQEHAYALAVE+LL IE+P RGQLIRVLYSEIGRIL+HLLNVTTQA
Sbjct: 61 AVPYLDRLDYVAPMNQEHAYALAVERLLDIEVPKRGQLIRVLYSEIGRILNHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLMVFYERA G+RMHAAYFRPGGVHQD+P +L+EDIG W D F
Sbjct: 121 MDVGALTPPLWGFEEREKLMVFYERACGARMHAAYFRPGGVHQDLPDQLIEDIGKWIDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ L ++ DL+T NRIFKQRNV+IG VKLEDAW WGFSGVM+RGSGAAWDLRKSQPYECY
Sbjct: 181 FTTLKNLDDLITPNRIFKQRNVDIGVVKLEDAWAWGFSGVMVRGSGAAWDLRKSQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
SE++FDIP+GK+GDCYDRYL+RM EMR+S +I+RQCV+ LLGK +VGPVS +D KIVPPK
Sbjct: 241 SEMEFDIPVGKNGDCYDRYLIRMEEMRQSARIMRQCVDLLLGKERVGPVSNTDHKIVPPK 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MK SME+LIHHFKLYTEGYHVP GEVYAAVEAPKGEFGVYL+SDG NKPYRCK+RAP
Sbjct: 301 RGEMKCSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYLVSDGSNKPYRCKLRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHLQAM+FLC+GH LADVSAILGSLDIVFGEVDR
Sbjct: 361 GFAHLQAMDFLCRGHMLADVSAILGSLDIVFGEVDR 396
>gi|163759540|ref|ZP_02166625.1| NADH dehydrogenase subunit D [Hoeflea phototrophica DFL-43]
gi|162283137|gb|EDQ33423.1| NADH dehydrogenase subunit D [Hoeflea phototrophica DFL-43]
Length = 396
Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats.
Identities = 332/396 (83%), Positives = 363/396 (91%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M++ R+F INFGPQHPAAHGVLRL+LELDGEIVERVDPHIGLLHRGTEKLIE KT+LQ
Sbjct: 1 MNEHNVRNFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIEAKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVPYFDRLDYVAPMNQEHA+ALAVEKL G+ +P RGQLIRVLYSEIGRILSHLLNVTTQA
Sbjct: 61 AVPYFDRLDYVAPMNQEHAFALAVEKLAGVTVPKRGQLIRVLYSEIGRILSHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+DVGALTPPLWGFEEREKLMVFYERA G+R+HAAYFRPGGVHQD+P +LVEDIG WCD F
Sbjct: 121 LDVGALTPPLWGFEEREKLMVFYERACGARLHAAYFRPGGVHQDLPDDLVEDIGKWCDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+DI LLT NRIFKQRNV+I VKL+DAW WGFSGVM+RGSGAAWDLR+SQPYECY
Sbjct: 181 LQTCDDIEGLLTDNRIFKQRNVDIAIVKLDDAWAWGFSGVMVRGSGAAWDLRRSQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
SE+DFDIPIGK+GDCYDRYL+RM EMRESVKI++QCV +LLGK K GPVSA+D KIVPPK
Sbjct: 241 SEMDFDIPIGKNGDCYDRYLIRMQEMRESVKIMKQCVEQLLGKEKTGPVSATDGKIVPPK 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MKRSME+LIHHFKLYTEGY VP GEVY AVEAPKGEFGVYL+SDG NKPYRCKIRAP
Sbjct: 301 RGEMKRSMEALIHHFKLYTEGYRVPEGEVYTAVEAPKGEFGVYLVSDGSNKPYRCKIRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GYAHLQAM+F+C+GHQLADVSA LGSLDIVFGEVDR
Sbjct: 361 GYAHLQAMDFICRGHQLADVSAALGSLDIVFGEVDR 396
>gi|222085578|ref|YP_002544108.1| NADH-ubiquinone oxidoreductase chain D protein [Agrobacterium
radiobacter K84]
gi|221723026|gb|ACM26182.1| NADH-ubiquinone oxidoreductase chain D protein [Agrobacterium
radiobacter K84]
Length = 396
Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats.
Identities = 341/396 (86%), Positives = 371/396 (93%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + R+F INFGPQHPAAHGVLRL+LELDGEIVERVDPHIGLLHRGTEKLIETKT+LQ
Sbjct: 1 MTEHNVRNFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIETKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVPYFDRLDYVAPMNQEHAYAL+VEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA
Sbjct: 61 AVPYFDRLDYVAPMNQEHAYALSVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAY RPGGVHQD+P +LV+DIG WCD F
Sbjct: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYIRPGGVHQDLPEKLVQDIGDWCDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
AL+DI DLLTGNRIFKQRNV+IG V LED W WGFSGVM+RGSGAAWDLR+SQPYECY
Sbjct: 181 LKALDDIDDLLTGNRIFKQRNVDIGVVSLEDCWAWGFSGVMVRGSGAAWDLRRSQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
S+L+FDIPIGK+GDCYDRYL+RM+EMRESV+I++QCVNRLLG K GPVS+ D K+VPPK
Sbjct: 241 SDLEFDIPIGKNGDCYDRYLIRMIEMRESVRIMKQCVNRLLGDAKTGPVSSLDGKVVPPK 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MKRSME+LIHHFKLYTEGYHVP GEVY AVEAPKGEFGVYL+SDG NKPYRCKIRAP
Sbjct: 301 RGEMKRSMEALIHHFKLYTEGYHVPAGEVYCAVEAPKGEFGVYLVSDGSNKPYRCKIRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GYAHLQAM+F+C+GHQLADV+A+LGSLDIVFGEVDR
Sbjct: 361 GYAHLQAMDFMCRGHQLADVAAVLGSLDIVFGEVDR 396
>gi|83311883|ref|YP_422147.1| NADH dehydrogenase subunit D [Magnetospirillum magneticum AMB-1]
gi|123541539|sp|Q2W3I7|NUOD_MAGMM RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|82946724|dbj|BAE51588.1| NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Magnetospirillum
magneticum AMB-1]
Length = 392
Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats.
Identities = 269/396 (67%), Positives = 320/396 (80%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + + +S+TINFGPQHPAAHGVLRLILE+ GE+V+R DPH+GLLHRGTEKLIE KT+LQ
Sbjct: 1 MAESQIQSYTINFGPQHPAAHGVLRLILEMSGEVVDRADPHVGLLHRGTEKLIEHKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A PYFDRLDYV MNQEHA+ LA EKLLGI+IPIR + IR LY EIGRIL+HLLNVT
Sbjct: 61 ATPYFDRLDYVGTMNQEHAFVLATEKLLGIDIPIRAKFIRTLYDEIGRILNHLLNVTAFI 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
DVG +TP L+GFEEREKLM FYER G+R+HA Y+RPGGV D+P L+EDI WC++F
Sbjct: 121 FDVGGMTPLLYGFEEREKLMEFYERVCGARLHANYYRPGGVAADLPAGLLEDIAAWCETF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P L+DI L T NRIFKQR V+IG V E A WGF+G +R SG AWDLRKSQPY+ Y
Sbjct: 181 PKVLDDIETLATDNRIFKQRVVDIGVVSPEQALDWGFTGPNLRASGIAWDLRKSQPYDVY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+++FDIP+GK+GD YDRYLVR++EMRESVKI++QC+ ++ G GPV D KI PPK
Sbjct: 241 DQMEFDIPVGKNGDGYDRYLVRVLEMRESVKIMKQCIAKMPG----GPVRVEDNKITPPK 296
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R++MK SMESLIHHFKL+TEG+ VP GEVY A+EAPKGEF VYL+SDG KPYRCKIR P
Sbjct: 297 RSEMKTSMESLIHHFKLFTEGFKVPAGEVYGAIEAPKGEFAVYLVSDGTGKPYRCKIRPP 356
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GY HLQA++ + KGH LADV A +GS+DIVFGE+DR
Sbjct: 357 GYVHLQALDMMSKGHMLADVVANIGSIDIVFGEIDR 392
>gi|209964547|ref|YP_002297462.1| NADH-quinone oxidoreductase chain D [Rhodospirillum centenum SW]
gi|229891300|sp|B6ISX8|NUOD_RHOCS RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|209958013|gb|ACI98649.1| NADH-quinone oxidoreductase chain D [Rhodospirillum centenum SW]
Length = 398
Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats.
Identities = 272/396 (68%), Positives = 326/396 (82%), Gaps = 2/396 (0%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + + + FT+NFGPQHPAAHGVLRL+LE+DGE+V+R DPH+GLLHRGTEKLIE KT++Q
Sbjct: 5 VAETQIKPFTMNFGPQHPAAHGVLRLVLEMDGEVVQRADPHVGLLHRGTEKLIEYKTYIQ 64
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+PM+QEHA+ALA EKLLGI +P+RGQ IRVL+SEI RIL+HLLN+TT
Sbjct: 65 ALPYFDRLDYVSPMSQEHAFALATEKLLGITVPVRGQYIRVLFSEITRILNHLLNITTFG 124
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+DVGA+TP LWGFEEREKLM FYER SG+RMHA YFRPGGV+ D+P L +DI + + F
Sbjct: 125 LDVGAITPSLWGFEEREKLMAFYERVSGARMHANYFRPGGVNLDMPAGLADDIWEYTERF 184
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P + D+++LLT NRIFKQR V+IG V DA WGFSG MIRGSG WDLRK+QPY+ Y
Sbjct: 185 PKFVADLNNLLTENRIFKQRTVDIGVVSRADALAWGFSGPMIRGSGVPWDLRKAQPYDRY 244
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E DFDIP+G GDCY RYLVRM EMR+S ++IRQ + +L GPV +D KI PP
Sbjct: 245 DEFDFDIPVGSTGDCYARYLVRMEEMRQSNRLIRQALEKLAKTP--GPVKVNDRKIAPPP 302
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MKRSMESLIHHFKLYTEGYHVP GE Y AVE+PKGEFGVYL+SDG N+PYRCKIR
Sbjct: 303 RGEMKRSMESLIHHFKLYTEGYHVPAGETYTAVESPKGEFGVYLVSDGTNRPYRCKIRPT 362
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G++HLQAM+F+ KGH LAD AI+GS+DIVFGE+DR
Sbjct: 363 GFSHLQAMDFMSKGHMLADTVAIIGSMDIVFGEIDR 398
>gi|86749693|ref|YP_486189.1| NADH dehydrogenase subunit D [Rhodopseudomonas palustris HaA2]
gi|123004159|sp|Q2IWY2|NUOD_RHOP2 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|86572721|gb|ABD07278.1| NADH dehydrogenase I, D subunit [Rhodopseudomonas palustris HaA2]
Length = 401
Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats.
Identities = 309/390 (79%), Positives = 350/390 (89%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
R+FTINFGPQHPAAHGVLRL+LELDGE+VERVDPHIGLLHRGTEKLIE KT+LQA+PYFD
Sbjct: 12 RNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEQKTYLQAIPYFD 71
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYVAPMNQEHA+ LA EKLLGIE P R QLIRVLY EIGRILSHLLNVTTQAMDVGAL
Sbjct: 72 RLDYVAPMNQEHAFCLAAEKLLGIEAPRRAQLIRVLYCEIGRILSHLLNVTTQAMDVGAL 131
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TPPLWGFEEREKLM+FYERASGSRMHAAYFR GGVHQD+PP+L++DI WCD+F ++D
Sbjct: 132 TPPLWGFEEREKLMMFYERASGSRMHAAYFRIGGVHQDLPPKLIDDIDNWCDNFIQTVDD 191
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ LLT NRIFKQRNV+IG V LE AW WGFSGVM+RGSGAAWDLRKSQPYECY+E+DFD
Sbjct: 192 LETLLTDNRIFKQRNVDIGVVTLEQAWEWGFSGVMVRGSGAAWDLRKSQPYECYAEMDFD 251
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+PIGK+GDCYDRY +R+ EMR+SV+I++QC+ ++ G V+ D KI PP+R +MKR
Sbjct: 252 VPIGKNGDCYDRYCIRVEEMRQSVRIMKQCIAKMREPAGQGRVAVDDNKIFPPRRGEMKR 311
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
SMESLIHHFKLYTEG+ VP GEVY AVEAPKGEFGVYL+SDG NKPY+CK+RAPG+AHLQ
Sbjct: 312 SMESLIHHFKLYTEGFRVPAGEVYVAVEAPKGEFGVYLVSDGTNKPYKCKVRAPGFAHLQ 371
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AM+F+C+GH LADVSAILGSLDIVFGEVDR
Sbjct: 372 AMDFICRGHLLADVSAILGSLDIVFGEVDR 401
>gi|91977354|ref|YP_570013.1| NADH dehydrogenase subunit D [Rhodopseudomonas palustris BisB5]
gi|123735350|sp|Q135X7|NUOD_RHOPS RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|91683810|gb|ABE40112.1| NADH dehydrogenase I, D subunit [Rhodopseudomonas palustris BisB5]
Length = 416
Score = 468 bits (1204), Expect = e-130, Method: Composition-based stats.
Identities = 313/390 (80%), Positives = 351/390 (90%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
R+FTINFGPQHPAAHGVLRL+LELDGE+VERVDPHIGLLHRGTEKLIE KT+LQA+PYFD
Sbjct: 27 RNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEHKTYLQAIPYFD 86
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYVAPMNQEHA+ LAVEKLLGI +P R QLIRVLY EIGRILSHLLNVTTQAMDVGAL
Sbjct: 87 RLDYVAPMNQEHAFCLAVEKLLGIAVPRRAQLIRVLYCEIGRILSHLLNVTTQAMDVGAL 146
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TPPLWGFEEREKLM+FYERASGSRMHAAYFR GGVHQD+PP+LV DI WCDSF ++D
Sbjct: 147 TPPLWGFEEREKLMMFYERASGSRMHAAYFRVGGVHQDLPPQLVADIDSWCDSFIQVVDD 206
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ LLT NRIFKQRNV+IG V LE AW WGFSGVM+RGSGAAWDLRKSQPYECY+E+DFD
Sbjct: 207 LETLLTDNRIFKQRNVDIGVVTLEQAWEWGFSGVMVRGSGAAWDLRKSQPYECYAEMDFD 266
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
IPIGK+GDCYDRY +R+ EMR+S++I++QC+ +L + G V+ D KI PP+R +MKR
Sbjct: 267 IPIGKNGDCYDRYCLRVEEMRQSIRIMKQCIAKLRAPDGQGRVAIDDNKIFPPRRGEMKR 326
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
SMESLIHHFKLYTEG+ VP GEVY AVEAPKGEFGVYL+SDG NKPY+CKIRAPG+AHLQ
Sbjct: 327 SMESLIHHFKLYTEGFRVPEGEVYVAVEAPKGEFGVYLVSDGSNKPYKCKIRAPGFAHLQ 386
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AM+F+C+GH LADVSAILGSLDIVFGEVDR
Sbjct: 387 AMDFICRGHLLADVSAILGSLDIVFGEVDR 416
>gi|115524530|ref|YP_781441.1| NADH dehydrogenase subunit D [Rhodopseudomonas palustris BisA53]
gi|122296211|sp|Q07NM3|NUOD_RHOP5 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|115518477|gb|ABJ06461.1| NADH dehydrogenase I, D subunit [Rhodopseudomonas palustris BisA53]
Length = 396
Score = 468 bits (1204), Expect = e-130, Method: Composition-based stats.
Identities = 315/396 (79%), Positives = 355/396 (89%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + R+FTINFGPQHPAAHGVLRL+LELDGE+VERVDPHIGLLHRGTEKLIE KT+LQ
Sbjct: 1 MPEGALRNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEQKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYVAPMNQEHA+ LA EKLLGI +P R QLIRVLY EIGRILSHLLNVTTQA
Sbjct: 61 AIPYFDRLDYVAPMNQEHAFCLAAEKLLGIAVPRRAQLIRVLYCEIGRILSHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFR GGVHQD+PP+L+EDI WCD+F
Sbjct: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRIGGVHQDLPPQLIEDIETWCDAF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P ++D+ LLTGNRIFKQRNV+IG V L AW WGFSGVM+RGSGAAWDLRKSQPYECY
Sbjct: 181 PQVVDDLDRLLTGNRIFKQRNVDIGVVTLPQAWEWGFSGVMVRGSGAAWDLRKSQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+E+DFD+PIGK+GDCYDRYL+RM EMR+SV I++QC+ +L + GPV+ D KIVPP+
Sbjct: 241 AEMDFDVPIGKNGDCYDRYLLRMEEMRQSVSIMKQCIAKLRAPDGQGPVALEDHKIVPPR 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MKRSME+LIHHFKLYTEG+ VP GEVY AVEAPKGEFGV+L+SDG NKPY+CKIRAP
Sbjct: 301 RGEMKRSMEALIHHFKLYTEGFRVPAGEVYVAVEAPKGEFGVFLVSDGTNKPYKCKIRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHLQAM+F+ +GH LADVSAILGSLDIVFGEVDR
Sbjct: 361 GFAHLQAMDFVTRGHLLADVSAILGSLDIVFGEVDR 396
>gi|148255912|ref|YP_001240497.1| NADH dehydrogenase subunit D [Bradyrhizobium sp. BTAi1]
gi|218534454|sp|A5EK97|NUOD_BRASB RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|146408085|gb|ABQ36591.1| NADH dehydrogenase subunit D [Bradyrhizobium sp. BTAi1]
Length = 398
Score = 467 bits (1203), Expect = e-130, Method: Composition-based stats.
Identities = 313/398 (78%), Positives = 360/398 (90%), Gaps = 2/398 (0%)
Query: 1 MDKKKS--RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTF 58
M+++ R+FTINFGPQHPAAHGVLRL+LELDGE+VERVDPHIGLLHRGTEKLIETKT+
Sbjct: 1 MNEQSPALRNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIETKTY 60
Query: 59 LQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTT 118
LQA+PYFDRLDYVAPMNQEHA+ LA E+LLGIE+P RGQLIRVLYSEIGR+LSHLLNVTT
Sbjct: 61 LQAMPYFDRLDYVAPMNQEHAFCLAAERLLGIEVPRRGQLIRVLYSEIGRLLSHLLNVTT 120
Query: 119 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHA YFR GGVHQD+PP+L++DI +CD
Sbjct: 121 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHANYFRIGGVHQDLPPKLIDDIDAFCD 180
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
F ++D+ LLTGNRIFKQRNV+IG V L+ AW WGFSGVM+RGSGAAWDLRKSQPY+
Sbjct: 181 PFLKVVDDLDQLLTGNRIFKQRNVDIGVVTLKQAWEWGFSGVMVRGSGAAWDLRKSQPYD 240
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
Y+E++FD+PIGK+GDCYDRYL+RM EMR+SV+I++QC+ +L + GPV +D KI P
Sbjct: 241 VYAEMEFDVPIGKNGDCYDRYLIRMEEMRQSVRIMKQCIQKLRAPDGQGPVVVTDNKIAP 300
Query: 299 PKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
P+R +MKRSME+LIHHFKLYTEG HVP GE+YAAVEAPKGEFGVYL+SDG NKPY+CKIR
Sbjct: 301 PRRGEMKRSMEALIHHFKLYTEGVHVPAGEIYAAVEAPKGEFGVYLVSDGSNKPYKCKIR 360
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
APG+AHLQAM+FLC+GH LADVSAILGSLDIVFGEVDR
Sbjct: 361 APGFAHLQAMDFLCRGHLLADVSAILGSLDIVFGEVDR 398
>gi|209548865|ref|YP_002280782.1| NADH dehydrogenase subunit D [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|229891299|sp|B5ZYL5|NUOD_RHILW RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|209534621|gb|ACI54556.1| NADH dehydrogenase I, D subunit [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 396
Score = 467 bits (1203), Expect = e-130, Method: Composition-based stats.
Identities = 338/396 (85%), Positives = 369/396 (93%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + R+F INFGPQHPAAHGVLRL+LELDGEIVERVDPHIGLLHRGTEKLIETKT+LQ
Sbjct: 1 MTEHNVRNFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIETKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA
Sbjct: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAY RPGGVHQD+P +LV+DIG WCD F
Sbjct: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYVRPGGVHQDLPEQLVQDIGDWCDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
AL+DI +LLTGNRIFKQRNV+IG V LED W WGFSGVM+RGSGAAWDLR+SQPYECY
Sbjct: 181 LKALDDIDNLLTGNRIFKQRNVDIGVVSLEDCWAWGFSGVMVRGSGAAWDLRRSQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
S+L+FDIPIGK+GD YDRYL+RM+EMR+SV+I++QCVNRLL K GP S+ D K+VPPK
Sbjct: 241 SDLEFDIPIGKNGDNYDRYLIRMIEMRQSVRIMKQCVNRLLSDAKTGPFSSIDGKVVPPK 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MKRSME+LIHHFKLYTEGYHVP GEVYAAVEAPKGEFGVYL+SDG NKPYRCKIRAP
Sbjct: 301 RGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYLVSDGSNKPYRCKIRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GYAHLQAM+F+C+GHQLADV+A+LGSLDIVFGEVDR
Sbjct: 361 GYAHLQAMDFMCRGHQLADVAAVLGSLDIVFGEVDR 396
>gi|260462233|ref|ZP_05810477.1| NADH dehydrogenase I, D subunit [Mesorhizobium opportunistum
WSM2075]
gi|259032093|gb|EEW33360.1| NADH dehydrogenase I, D subunit [Mesorhizobium opportunistum
WSM2075]
Length = 396
Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats.
Identities = 322/396 (81%), Positives = 356/396 (89%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + R+F INFGPQHPAAHGVLRL+LELDGE+V+RVDPHIGLLHRGTEKLIE KT+LQ
Sbjct: 1 MAETSVRNFNINFGPQHPAAHGVLRLVLELDGEVVDRVDPHIGLLHRGTEKLIEAKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVPY DRLDY APMNQEHA+ALA E+LLGIE+P RGQLIRVLY EIGRI+SH+LNVTTQA
Sbjct: 61 AVPYLDRLDYCAPMNQEHAFALAAERLLGIEVPRRGQLIRVLYCEIGRIMSHILNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGF EREKLMVFYERASGSRMHAAYFRPGGVHQD+P +LVEDIG W D F
Sbjct: 121 MDVGALTPPLWGFVEREKLMVFYERASGSRMHAAYFRPGGVHQDLPRQLVEDIGKWIDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+L+D+ LLTGNRIFKQRNV+IG V L DAW WGFSGVM+RGSG+ WDLRKSQPYECY
Sbjct: 181 LKSLDDLDKLLTGNRIFKQRNVDIGIVSLADAWAWGFSGVMVRGSGSPWDLRKSQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
SE+DFDIPIGK+GDC+DRYLVRM EMR+S KI+RQCV+ LLGK GPVS D K+VPPK
Sbjct: 241 SEMDFDIPIGKNGDCFDRYLVRMEEMRQSAKIMRQCVDLLLGKESTGPVSNLDGKVVPPK 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R MKRSME+LIHHFKLYTEGY VP GEVYAAVEAPKGEFGVYL+SDG NKPYRCK+RAP
Sbjct: 301 RQAMKRSMEALIHHFKLYTEGYRVPAGEVYAAVEAPKGEFGVYLVSDGTNKPYRCKLRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHLQAM+FLC+GH LADV+A+LGSLDIVFGEVDR
Sbjct: 361 GFAHLQAMDFLCRGHMLADVTAVLGSLDIVFGEVDR 396
>gi|299135029|ref|ZP_07028220.1| NADH dehydrogenase I, D subunit [Afipia sp. 1NLS2]
gi|298590006|gb|EFI50210.1| NADH dehydrogenase I, D subunit [Afipia sp. 1NLS2]
Length = 405
Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats.
Identities = 313/395 (79%), Positives = 355/395 (89%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
D +R+FTINFGPQHPAAHGVLRL+LELDGE+VERVDPHIGLLHRGTEKLIE KT+LQA
Sbjct: 11 DTPGTRNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEQKTYLQA 70
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+PYFDRLDYVAPMNQEHA+ LA EKLLGI +P RGQLIRVLY EIGRILSHLLNVTTQAM
Sbjct: 71 IPYFDRLDYVAPMNQEHAFCLAAEKLLGITVPRRGQLIRVLYCEIGRILSHLLNVTTQAM 130
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
DVGALTPPLWGFEEREKLM+FYERASGSRMHAA+FR GGVHQD+PP+L++DI WCD+FP
Sbjct: 131 DVGALTPPLWGFEEREKLMMFYERASGSRMHAAFFRIGGVHQDLPPKLIDDIDAWCDAFP 190
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
++D+ LLT NRIFKQRNV+IG V LE AW WGFSGVM+RGSGAAWDLRK+QPYECY+
Sbjct: 191 EKVDDLEVLLTDNRIFKQRNVDIGVVTLEQAWEWGFSGVMVRGSGAAWDLRKAQPYECYA 250
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
E+DFDIPIGK+GDCYDRY +R+ EM +SV+I++QC+ +L + GPV D KI PP+R
Sbjct: 251 EMDFDIPIGKNGDCYDRYCIRIEEMHQSVRIMKQCIAKLRAPDGQGPVVIEDNKITPPRR 310
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+MKRSME+LIHHFKLYTEG HVP GEVYAAVEAPKGEFGVYL++DG NKPY+CKIRAPG
Sbjct: 311 GEMKRSMEALIHHFKLYTEGVHVPAGEVYAAVEAPKGEFGVYLVADGTNKPYKCKIRAPG 370
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AHLQAM+F+CKGH LADVSAILGSLDIVFGEVDR
Sbjct: 371 FAHLQAMDFICKGHLLADVSAILGSLDIVFGEVDR 405
>gi|11466533|ref|NP_044782.1| NADH dehydrogenase subunit 7 [Reclinomonas americana]
gi|6647647|sp|O21270|NDUS2_RECAM RecName: Full=NADH-ubiquinone oxidoreductase 49 kDa subunit;
AltName: Full=NADH dehydrogenase subunit 7
gi|2258363|gb|AAD11897.1| NADH dehydrogenase subunit 7 [Reclinomonas americana]
Length = 396
Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats.
Identities = 270/394 (68%), Positives = 323/394 (81%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
KK ++FT+NFGPQHPAAHGVLRL+LEL+GE+V R DPHIGLLHRGTEKLIE K +LQA+
Sbjct: 7 TKKLKNFTMNFGPQHPAAHGVLRLVLELNGEVVNRADPHIGLLHRGTEKLIEYKNYLQAL 66
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M QEHAY+LAVEKLLG E+P R Q IRVL+ EI RIL+HL+ VTT A+D
Sbjct: 67 PYFDRLDYVSMMAQEHAYSLAVEKLLGCEVPKRAQYIRVLFCEITRILNHLMAVTTHALD 126
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP LWGFEEREKLM FYER SG+RMHAAY RPGGV QD+P L EDI + F S
Sbjct: 127 VGAMTPFLWGFEEREKLMEFYERVSGARMHAAYIRPGGVSQDMPMGLSEDIYKFAKQFGS 186
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+++I D+L+ NRI+KQR V+IGTV E+A WGFSGVM+RGSG AWDLRK+QPY+ Y E
Sbjct: 187 RIDEIEDVLSSNRIWKQRLVDIGTVSAEEALDWGFSGVMLRGSGIAWDLRKTQPYDVYDE 246
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
L+FDIP+G GDCYDRYL+R+ EMR+S+K+I QC+N++ G + D KI PP R
Sbjct: 247 LEFDIPVGTKGDCYDRYLIRVEEMRQSLKLIMQCLNKM----PTGVIKVDDKKISPPSRV 302
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
DMK SME+LIHHFKLYTEGY VP+GE Y AVEAPKGEFGVYL+SDG +KPYRCKI+APG+
Sbjct: 303 DMKDSMEALIHHFKLYTEGYSVPIGETYTAVEAPKGEFGVYLVSDGSSKPYRCKIKAPGF 362
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+HLQ + F+ KGH +ADV I+G+ DIVFGEVDR
Sbjct: 363 SHLQGLNFMSKGHMIADVVTIIGTQDIVFGEVDR 396
>gi|192291669|ref|YP_001992274.1| NADH dehydrogenase subunit D [Rhodopseudomonas palustris TIE-1]
gi|218534442|sp|B3Q7N3|NUOD_RHOPT RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|192285418|gb|ACF01799.1| NADH dehydrogenase I, D subunit [Rhodopseudomonas palustris TIE-1]
Length = 402
Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats.
Identities = 314/390 (80%), Positives = 355/390 (91%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
R+FTINFGPQHPAAHGVLRL+LELDGE+VERVDPHIGLLHRGTEKLIE KT+LQA+PYFD
Sbjct: 13 RNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEQKTYLQAIPYFD 72
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYVAPMNQEHA+ LAVEKLLGI +P R QLIRVLY+EIGRILSHLLNVTTQAMDVGAL
Sbjct: 73 RLDYVAPMNQEHAFCLAVEKLLGIAVPRRAQLIRVLYAEIGRILSHLLNVTTQAMDVGAL 132
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TPPLWGFEEREKLM+FYERASGSRMHAAYFR GGVHQD+PP+LV+DI WCD+FP+ +ND
Sbjct: 133 TPPLWGFEEREKLMMFYERASGSRMHAAYFRVGGVHQDLPPKLVDDIDAWCDAFPAVVND 192
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ LL+ NRIFKQRNV+IG V L+ AW WGFSGVM+RGSGAAWDLRKSQPYECY+ELDF+
Sbjct: 193 LDRLLSDNRIFKQRNVDIGVVTLDQAWSWGFSGVMVRGSGAAWDLRKSQPYECYAELDFE 252
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+PIGK+GDCYDRY +RM EMR+SV+I++QC+ +L + GPV D KI PP+R +MKR
Sbjct: 253 VPIGKNGDCYDRYHIRMEEMRQSVRIMKQCIAKLRAPDGQGPVVVDDHKIFPPRRGEMKR 312
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
SME+LIHHFKLYTEG+HVP GEVY AVEAPKGEFGVYL+SDG NKPY+CKIRAPG+AHLQ
Sbjct: 313 SMEALIHHFKLYTEGFHVPAGEVYVAVEAPKGEFGVYLVSDGSNKPYKCKIRAPGFAHLQ 372
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AM+FL +GH LADVSAILGSLDIVFGEVDR
Sbjct: 373 AMDFLSRGHLLADVSAILGSLDIVFGEVDR 402
>gi|312116346|ref|YP_004013942.1| NADH dehydrogenase I, D subunit [Rhodomicrobium vannielii ATCC
17100]
gi|311221475|gb|ADP72843.1| NADH dehydrogenase I, D subunit [Rhodomicrobium vannielii ATCC
17100]
Length = 415
Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats.
Identities = 301/392 (76%), Positives = 347/392 (88%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++R+FTINFGPQHPAAHGVLRLILELDGE+V RVDPHIGLLHRGTEKLIE KT+LQA+PY
Sbjct: 24 ENRNFTINFGPQHPAAHGVLRLILELDGEVVHRVDPHIGLLHRGTEKLIEHKTYLQAIPY 83
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
FDRLDYVAPMNQEHA+ LA+EKLLG+ PIRGQLIRVL+SEIGRIL+HLLNVTT A+D+G
Sbjct: 84 FDRLDYVAPMNQEHAFCLAIEKLLGVTPPIRGQLIRVLFSEIGRILNHLLNVTTFALDLG 143
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
ALTPPLWGFEEREKLMVFYERASG+R+HA YFRPGGVHQD+P L++DI WCDSF L
Sbjct: 144 ALTPPLWGFEEREKLMVFYERASGARLHANYFRPGGVHQDLPQALIDDIEAWCDSFLKVL 203
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
D+ LLT NRIFKQR V+IG V LEDA WGF+G MIRGSGAAWDLRKSQPYECY++LD
Sbjct: 204 ADLDTLLTDNRIFKQRTVDIGVVSLEDAMAWGFTGTMIRGSGAAWDLRKSQPYECYADLD 263
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDIPIGK+GD +DRYL+RM EMR+S++I++QC+ RL GPV + K+ PP+R +M
Sbjct: 264 FDIPIGKNGDNWDRYLIRMEEMRQSIRIMKQCIERLNSPAGKGPVILPNNKVTPPRREEM 323
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
KRSME+LIHHFKLYTEG+ VP GEVYAAVEAPKGEFGVYL++DG N+PYRCKIRAPG+ H
Sbjct: 324 KRSMEALIHHFKLYTEGFRVPEGEVYAAVEAPKGEFGVYLVADGTNRPYRCKIRAPGFPH 383
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
L AM+FLCKGH LADV+AILGS+DIVFGE+DR
Sbjct: 384 LAAMDFLCKGHMLADVAAILGSIDIVFGEIDR 415
>gi|13471404|ref|NP_102970.1| NADH dehydrogenase subunit D [Mesorhizobium loti MAFF303099]
gi|75543500|sp|Q98KQ8|NUOD_RHILO RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|14022146|dbj|BAB48756.1| NADH-ubiquinone dehydrogenase chain D 1 [Mesorhizobium loti
MAFF303099]
Length = 396
Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats.
Identities = 324/396 (81%), Positives = 358/396 (90%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + R+F INFGPQHPAAHGVLRL+LELDGE+V+RVDPHIGLLHRGTEKLIE KT+LQ
Sbjct: 1 MAETSVRNFNINFGPQHPAAHGVLRLVLELDGEVVDRVDPHIGLLHRGTEKLIEAKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVPY DRLDY APMNQEHA+ALA E+LLGIE+P RGQLIRVLY EIGRI+SH+LNVTTQA
Sbjct: 61 AVPYLDRLDYCAPMNQEHAFALAAERLLGIEVPKRGQLIRVLYCEIGRIMSHILNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGF EREKLMVFYERASGSRMHAAYFRPGGVHQD+P +LVEDIG W D F
Sbjct: 121 MDVGALTPPLWGFVEREKLMVFYERASGSRMHAAYFRPGGVHQDLPRQLVEDIGKWIDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+++D+ LLTGNRIFKQRNV+IG V L DAW WGFSGVM+RGSGAAWDLRKSQPYECY
Sbjct: 181 LKSIDDLDRLLTGNRIFKQRNVDIGIVSLADAWAWGFSGVMVRGSGAAWDLRKSQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
SE+DFDIPIGK+GDCYDRYLVRM EMR+S +I+RQCV+ LLGK GPVS D K+VPPK
Sbjct: 241 SEMDFDIPIGKNGDCYDRYLVRMEEMRQSARIMRQCVDLLLGKESTGPVSNLDGKVVPPK 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
RA MKRSME+LIHHFKLYTEGY VP GEVYAAVEAPKGEFGVYL+SDG NKPYRCK+RAP
Sbjct: 301 RAAMKRSMEALIHHFKLYTEGYRVPAGEVYAAVEAPKGEFGVYLVSDGTNKPYRCKLRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHLQAM+FLC+GH LADV+A+LGSLDIVFGEVDR
Sbjct: 361 GFAHLQAMDFLCRGHLLADVTAVLGSLDIVFGEVDR 396
>gi|150406473|ref|YP_001315124.1| NADH dehydrogenase subunit 7 [Chlorokybus atmophyticus]
gi|126507710|gb|ABO15107.1| NADH dehydrogenase subunit 7 [Chlorokybus atmophyticus]
Length = 398
Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats.
Identities = 264/396 (66%), Positives = 326/396 (82%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
++ KK ++FT+NFGPQHPAAHGVLRL+LE++GE+VER DPHIGLLHRGTEKLIE KT+LQ
Sbjct: 7 LEPKKIKNFTLNFGPQHPAAHGVLRLVLEMNGEVVERADPHIGLLHRGTEKLIEYKTYLQ 66
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+ M QEHAY+LAVEKLLG E+P+R Q IRVL+SEI R+L+HLL +TT A
Sbjct: 67 ALPYFDRLDYVSMMAQEHAYSLAVEKLLGCEVPLRAQYIRVLFSEITRLLNHLLALTTHA 126
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTP LW FEEREKL+ FYER SG+RMHA+Y RPGGV QD+P L EDI + F
Sbjct: 127 MDVGALTPFLWAFEEREKLLEFYERVSGARMHASYIRPGGVSQDLPIGLSEDIYKFAQQF 186
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
S +++I ++LT NRI+KQR V+IG V EDA WGFSGVM+RGSG +WDLRK+QPY+ Y
Sbjct: 187 SSRVDEIEEMLTNNRIWKQRLVDIGVVTAEDAMNWGFSGVMLRGSGISWDLRKAQPYDVY 246
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
++DFD+P+G GDCYDRYL+R+ EMR+S++II QC+N++ G + + D KI PP
Sbjct: 247 DKVDFDVPVGTRGDCYDRYLIRVEEMRQSIRIIMQCINQM----PTGMIKSDDRKITPPS 302
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R MK+SMESLIHHFKLYTEG+ VP E Y AVEAPKGEFGVYL+S+ N+PYRCKIRAP
Sbjct: 303 RLQMKQSMESLIHHFKLYTEGFSVPSAETYTAVEAPKGEFGVYLVSNNTNRPYRCKIRAP 362
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHLQ+++F+ K H LADV I+G+ DIVFGE+DR
Sbjct: 363 GFAHLQSLDFMSKNHMLADVVTIIGTQDIVFGEIDR 398
>gi|190891288|ref|YP_001977830.1| NADH-ubiquinone oxidoreductase, chain D [Rhizobium etli CIAT 652]
gi|218534357|sp|B3PW00|NUOD1_RHIE6 RecName: Full=NADH-quinone oxidoreductase subunit D 1; AltName:
Full=NADH dehydrogenase I subunit D 1; AltName:
Full=NDH-1 subunit D 1
gi|190696567|gb|ACE90652.1| NADH-ubiquinone oxidoreductase protein, chain D [Rhizobium etli
CIAT 652]
Length = 396
Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats.
Identities = 336/396 (84%), Positives = 369/396 (93%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + R+F INFGPQHPAAHGVLRL+LELDGEIVERVDPHIGLLHRGTEKLIETKT+LQ
Sbjct: 1 MTEHNVRNFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIETKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVPYFDRLDYVAPMNQEHAYALAVE+LLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA
Sbjct: 61 AVPYFDRLDYVAPMNQEHAYALAVERLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAY RPGGVHQD+P +LV+DIG WCD F
Sbjct: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYIRPGGVHQDLPEKLVQDIGDWCDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
AL+DI +LLTGNRIFKQRNV+IG V LED W WGFSGVM+RGSGAAWDLR++QPYECY
Sbjct: 181 LKALDDIDNLLTGNRIFKQRNVDIGVVSLEDCWAWGFSGVMVRGSGAAWDLRRAQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
S+L+FDIPIGK+GD YDRYL+RM+EMR+SV+I++QCVNRLL K GP S+ D K+VPPK
Sbjct: 241 SDLEFDIPIGKNGDNYDRYLIRMIEMRQSVRIMKQCVNRLLSDAKTGPFSSIDGKVVPPK 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MKRSME+LIHHFKLYTEGYHVP GEVYAAVEAPKGEFGVYL+SDG NKPYRCKIRAP
Sbjct: 301 RGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYLVSDGSNKPYRCKIRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GYAHLQAM+F+C+GHQLADV+A+LGSLDIVFGEVDR
Sbjct: 361 GYAHLQAMDFMCRGHQLADVAAVLGSLDIVFGEVDR 396
>gi|315122723|ref|YP_004063212.1| NADH dehydrogenase subunit D [Candidatus Liberibacter solanacearum
CLso-ZC1]
gi|313496125|gb|ADR52724.1| NADH dehydrogenase subunit D [Candidatus Liberibacter solanacearum
CLso-ZC1]
Length = 396
Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats.
Identities = 366/396 (92%), Positives = 383/396 (96%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M +KK R FT+NFGPQHPAAHGVLRLILELDGE+VERVDPHIGLLHRGTEKLIETKTFLQ
Sbjct: 1 MGEKKIRGFTMNFGPQHPAAHGVLRLILELDGEVVERVDPHIGLLHRGTEKLIETKTFLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA
Sbjct: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP LVEDIGCWCDSF
Sbjct: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPVLVEDIGCWCDSF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P+ L+DIS LLT +RIFKQRNV+IGTVKLEDAWG GFSGVMIRGSGAAWDLRKSQPYECY
Sbjct: 181 PAVLDDISGLLTESRIFKQRNVDIGTVKLEDAWGLGFSGVMIRGSGAAWDLRKSQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+ELDFDIPIGK GDCYDRYLVRMMEMRES+KIIRQCV+RLLG N+VGPV ASD KI+PP+
Sbjct: 241 AELDFDIPIGKKGDCYDRYLVRMMEMRESIKIIRQCVDRLLGDNRVGPVFASDSKIIPPR 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
RADMKRSME+LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL+SDG NKPYRC+IRAP
Sbjct: 301 RADMKRSMEALIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLVSDGSNKPYRCRIRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR
Sbjct: 361 GFAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
>gi|58584385|ref|YP_197958.1| NADH dehydrogenase subunit D [Wolbachia endosymbiont strain TRS of
Brugia malayi]
gi|75508014|sp|Q5GTF8|NUOD_WOLTR RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|58418701|gb|AAW70716.1| NADH:ubiquinone oxidoreductase chain D [Wolbachia endosymbiont
strain TRS of Brugia malayi]
Length = 390
Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats.
Identities = 263/390 (67%), Positives = 328/390 (84%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
++ +NFGPQHPAAHGVLRL+LE+DGEI+ER DPHIGLLHRGTEKLIE KT+LQA+PYFD
Sbjct: 5 KTMMLNFGPQHPAAHGVLRLVLEMDGEIIERADPHIGLLHRGTEKLIEHKTYLQALPYFD 64
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYV+PM+QEHAY+L VEKLL E+PIR + +RVL+ E+ RIL+HLLN+++QA+DVGA+
Sbjct: 65 RLDYVSPMSQEHAYSLCVEKLLQCEVPIRAKYLRVLFCELTRILNHLLNISSQALDVGAM 124
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP LW FEEREK++ FYERASG+R HAAY RPGGV D+P L+EDI + + FP ++D
Sbjct: 125 TPLLWLFEEREKILEFYERASGARFHAAYIRPGGVAADVPEGLIEDIAKFIEQFPQYIDD 184
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ +LLT NRI+KQR V I + ++ A WGFSG M+R +G AWDLRKSQPYE Y +LDFD
Sbjct: 185 VDELLTENRIWKQRTVGISEISIKQALDWGFSGPMLRAAGLAWDLRKSQPYEIYDQLDFD 244
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
IP+G++GDCYDRYLVRM E+R+SV +++QC+ ++ GPV D KI PP R +MKR
Sbjct: 245 IPVGQNGDCYDRYLVRMEEIRQSVSLVKQCIEKI----PEGPVKTEDRKISPPPRTEMKR 300
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
SME+LIHHFKLY+EGYHVP GE YAAVEAPKGEFGVY++SDG N+PYRC+IRAPG+AHLQ
Sbjct: 301 SMEALIHHFKLYSEGYHVPEGEAYAAVEAPKGEFGVYIVSDGTNRPYRCRIRAPGFAHLQ 360
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A++F+ KGH LADV+AI+GSLDIVFGE+DR
Sbjct: 361 ALDFMAKGHMLADVAAIIGSLDIVFGEIDR 390
>gi|260463589|ref|ZP_05811788.1| NADH dehydrogenase I, D subunit [Mesorhizobium opportunistum
WSM2075]
gi|259030680|gb|EEW31957.1| NADH dehydrogenase I, D subunit [Mesorhizobium opportunistum
WSM2075]
Length = 396
Score = 465 bits (1198), Expect = e-129, Method: Composition-based stats.
Identities = 294/396 (74%), Positives = 345/396 (87%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + R+FTINFGPQHP+AHGVLRL+LELDGEIV+R DPHIGLLHRGTEKLIE K +LQ
Sbjct: 1 MAEAAVRNFTINFGPQHPSAHGVLRLVLELDGEIVDRADPHIGLLHRGTEKLIEYKNYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYVAPMNQEHA+ LA EKLL I +P RGQLIRVL+ EIGR+LSHLLNVTTQA
Sbjct: 61 ALPYFDRLDYVAPMNQEHAFCLAAEKLLEISVPRRGQLIRVLFCEIGRLLSHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MD+GALTPPLWGF EREKLMVFYERASG+RMHA YFR GGVHQD+PP+L++DI +CD F
Sbjct: 121 MDIGALTPPLWGFAEREKLMVFYERASGARMHANYFRIGGVHQDLPPKLLDDIWAFCDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
++ DLLTG+RIFKQRNV++G + L+DAW WGFSGVM+RGSGA+WDLRK+QPYECY
Sbjct: 181 LKVCENLDDLLTGSRIFKQRNVDVGAISLDDAWAWGFSGVMVRGSGASWDLRKAQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E+DFDIP+GK+GDCYDRYLVRM EMR+SV+I++QC+++L GPV+ + KI PP
Sbjct: 241 PEMDFDIPVGKNGDCYDRYLVRMEEMRQSVRIMKQCLDKLRLPEGQGPVAIPNQKITPPP 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
RA MKRSME+ I HFKLYTEG+ VP GEVYAAVEAPKGEFGVYL+S+G N PYRCKIRAP
Sbjct: 301 RARMKRSMEATIQHFKLYTEGHRVPAGEVYAAVEAPKGEFGVYLVSNGSNVPYRCKIRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AHLQAM+FL +GH +ADV+AI+GSLDIVFGE+DR
Sbjct: 361 SFAHLQAMDFLSRGHMIADVAAIIGSLDIVFGEIDR 396
>gi|327188490|gb|EGE55704.1| NADH-ubiquinone oxidoreductase protein, chain D [Rhizobium etli
CNPAF512]
Length = 396
Score = 465 bits (1198), Expect = e-129, Method: Composition-based stats.
Identities = 336/396 (84%), Positives = 369/396 (93%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + R+F INFGPQHPAAHGVLRL+LELDGEIVERVDPHIGLLHRGTEKLIETKT+LQ
Sbjct: 1 MTEHNVRNFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIETKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVPYFDRLDYVAPMNQEHAYALAVE+LLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA
Sbjct: 61 AVPYFDRLDYVAPMNQEHAYALAVERLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAY RPGGVHQD+P +LV+DIG WCD F
Sbjct: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYVRPGGVHQDLPEKLVQDIGDWCDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
AL+DI +LLTGNRIFKQRNV+IG V LED W WGFSGVM+RGSGAAWDLR++QPYECY
Sbjct: 181 LKALDDIDNLLTGNRIFKQRNVDIGVVSLEDCWAWGFSGVMVRGSGAAWDLRRAQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
S+L+FDIPIGK+GD YDRYL+RM+EMR+SV+I++QCVNRLL K GP S+ D K+VPPK
Sbjct: 241 SDLEFDIPIGKNGDNYDRYLIRMIEMRQSVRIMKQCVNRLLSDAKTGPFSSIDGKVVPPK 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MKRSME+LIHHFKLYTEGYHVP GEVYAAVEAPKGEFGVYL+SDG NKPYRCKIRAP
Sbjct: 301 RGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYLVSDGSNKPYRCKIRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GYAHLQAM+F+C+GHQLADV+A+LGSLDIVFGEVDR
Sbjct: 361 GYAHLQAMDFMCRGHQLADVAAVLGSLDIVFGEVDR 396
>gi|319783429|ref|YP_004142905.1| NADH dehydrogenase I, D subunit [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317169317|gb|ADV12855.1| NADH dehydrogenase I, D subunit [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 396
Score = 465 bits (1198), Expect = e-129, Method: Composition-based stats.
Identities = 295/396 (74%), Positives = 346/396 (87%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + R+FTINFGPQHP+AHGVLRL+LELDGEIVER DPHIGLLHRGTEKLIE K +LQ
Sbjct: 1 MVEAAVRNFTINFGPQHPSAHGVLRLVLELDGEIVERADPHIGLLHRGTEKLIEHKNYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYVAPMNQEHA+ LA EKLL I +P RGQL+RVL+ EIGR+LSHLLNVTTQA
Sbjct: 61 ALPYFDRLDYVAPMNQEHAFCLAAEKLLDITVPKRGQLVRVLFCEIGRLLSHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MD+GALTPPLWGF EREKLMVFYERASG+RMHA YFR GGVHQD+P +L++DI +CD F
Sbjct: 121 MDIGALTPPLWGFAEREKLMVFYERASGARMHANYFRIGGVHQDLPAKLLDDIWAFCDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+++ DLLTG+RIFKQRNV++G + L+DAW WGFSGVM+RGSGAAWDLRK+QPYECY
Sbjct: 181 LKVCDNLDDLLTGSRIFKQRNVDVGVIGLDDAWRWGFSGVMVRGSGAAWDLRKAQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
++DFDIP+GK+GDCYDRYLVRM EMR+SV+I++QC+ +L GPV+ + KI PP+
Sbjct: 241 PDMDFDIPVGKNGDCYDRYLVRMEEMRQSVRIMKQCLEKLRSPEGQGPVAIPNQKITPPR 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
RA MKRSME+ I HFKLYTEG+ VP GEVYAAVEAPKGEFGVYL+SDGGN PYRCKIRAP
Sbjct: 301 RATMKRSMEATIQHFKLYTEGHRVPAGEVYAAVEAPKGEFGVYLVSDGGNVPYRCKIRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AHLQAM+FL +GH +ADV+AI+GSLDIVFGE+DR
Sbjct: 361 SFAHLQAMDFLSRGHMIADVAAIIGSLDIVFGEIDR 396
>gi|330813985|ref|YP_004358224.1| NADH-ubiquinone oxidoreductase chain D [Candidatus Pelagibacter sp.
IMCC9063]
gi|327487080|gb|AEA81485.1| NADH-ubiquinone oxidoreductase chain D [Candidatus Pelagibacter sp.
IMCC9063]
Length = 391
Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats.
Identities = 281/393 (71%), Positives = 333/393 (84%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K +++ +NFGPQHPAAHGVLRLILELDGE++ER DPHIGLLHRGTEKLIE KT+ QA+P
Sbjct: 3 KHTKTMNLNFGPQHPAAHGVLRLILELDGEVIERADPHIGLLHRGTEKLIEHKTYTQAIP 62
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYVAPMNQEHA+A+AVEKLL IE+PIR Q IRV++ EIGRILSH+LN+TTQA+DV
Sbjct: 63 YFDRLDYVAPMNQEHAFAMAVEKLLKIEVPIRAQYIRVVFCEIGRILSHILNITTQALDV 122
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP LWGFEEREKLMVFYER SGSR+HA YFRPGGVH D+P L +DI +C++FP
Sbjct: 123 GALTPSLWGFEEREKLMVFYERVSGSRLHANYFRPGGVHIDLPTGLADDIYKFCETFPDV 182
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ND+ LLT NRIFKQRNV+IG V ++A GFSGVM+RGSG WDLRKS PYECY+E
Sbjct: 183 INDLETLLTDNRIFKQRNVDIGIVSKQEALDHGFSGVMLRGSGVPWDLRKSNPYECYNEF 242
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DF IP+GK+GDCYDRYL R+ EM+ES+ I++Q + ++ GPV ++ K+ PPKR +
Sbjct: 243 DFKIPVGKNGDCYDRYLCRIEEMKESISIMKQALQKM----PEGPVMTANTKVGPPKRKE 298
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK SME+LI+HFKLYTEGYHVP GEVY AVEAPKGEFGVYL+SDG NKPYRCKI+APG+
Sbjct: 299 MKMSMEALINHFKLYTEGYHVPKGEVYTAVEAPKGEFGVYLVSDGSNKPYRCKIKAPGFT 358
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQAM ++ KGH LADV A+LGS+DIVFGEVDR
Sbjct: 359 HLQAMNYMIKGHMLADVPAVLGSMDIVFGEVDR 391
>gi|146322982|ref|XP_755704.2| NADH-ubiquinone oxidoreductase 49 kDa subunit [Aspergillus
fumigatus Af293]
gi|129558557|gb|EAL93666.2| NADH-ubiquinone oxidoreductase 49 kDa subunit, putative
[Aspergillus fumigatus Af293]
gi|159129761|gb|EDP54875.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, putative
[Aspergillus fumigatus A1163]
Length = 470
Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats.
Identities = 243/394 (61%), Positives = 305/394 (77%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+K R +T+NFGPQHPAAHGVLRLILEL+GE + R DPH+GLLHRGTEKLIE KT++QA+
Sbjct: 81 DRKIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYMQAL 140
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E ++LAVEKLL IEIP R + IR ++ EI RIL+HL++V + AMD
Sbjct: 141 PYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKWIRTMFGEITRILNHLMSVLSHAMD 200
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTP LWGFEEREKLM FYER SG+R+HAAY RPGGV QD+P L++DI W F
Sbjct: 201 VGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDLPLGLLDDIYQWATQFGD 260
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+++ +LLT NRI+K R +G V DA F+GVM+RGSG WD+RKSQPY+ Y +
Sbjct: 261 RIDETEELLTDNRIWKARTQGVGVVTAADAINMSFTGVMLRGSGVPWDIRKSQPYDAYDQ 320
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++FD+P+G +GDCYDRYL RM E R+S++II QC+N++ GPV D KI PP RA
Sbjct: 321 VEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNKMPA----GPVRVEDYKISPPPRA 376
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
MK +ME+LIHHF L+T+GY VP GE Y+A+EAPKGE GVYL+SDG +PYRCKIRAPG+
Sbjct: 377 AMKENMEALIHHFLLFTKGYAVPPGETYSAIEAPKGEMGVYLVSDGSERPYRCKIRAPGF 436
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL + + +GH LAD AI+G++D+VFGEVDR
Sbjct: 437 AHLSGFDQISRGHLLADAVAIIGTMDLVFGEVDR 470
>gi|92117741|ref|YP_577470.1| NADH dehydrogenase subunit D [Nitrobacter hamburgensis X14]
gi|122417681|sp|Q1QL87|NUOD2_NITHX RecName: Full=NADH-quinone oxidoreductase subunit D 2; AltName:
Full=NADH dehydrogenase I subunit D 2; AltName:
Full=NDH-1 subunit D 2
gi|91800635|gb|ABE63010.1| NADH dehydrogenase subunit D [Nitrobacter hamburgensis X14]
Length = 402
Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats.
Identities = 310/395 (78%), Positives = 354/395 (89%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ R+FTINFGPQHPAAHGVLRL+LELDGE+VERVDPHIGLLHRGTEKLIE KT+LQA
Sbjct: 8 ETPGMRNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEQKTYLQA 67
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+PYFDRLDYVAPMNQEHA+ LA EKLLGI +P RGQLIRVLY EIGRILSHLLNVTTQA+
Sbjct: 68 IPYFDRLDYVAPMNQEHAFCLAAEKLLGIAVPRRGQLIRVLYCEIGRILSHLLNVTTQAL 127
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
DVGALTPPLWGFEEREKLM+FYERASGSRMHAAYFR GGVHQD+PP+L++DI WCD F
Sbjct: 128 DVGALTPPLWGFEEREKLMMFYERASGSRMHAAYFRIGGVHQDLPPKLIDDIDAWCDPFL 187
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+ D+ LLT +RIFKQRNV+IG V L+ AW WGFSGVM+RGSGAAWDLRK+QPYECY+
Sbjct: 188 QVVADLDALLTDSRIFKQRNVDIGVVSLKQAWEWGFSGVMVRGSGAAWDLRKAQPYECYA 247
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
E+DFDIPIGK+GDCYDRYL+RM EMR+S +I++QC+ +L + GPV+ D KI PP+R
Sbjct: 248 EMDFDIPIGKNGDCYDRYLIRMEEMRQSARIMKQCIAKLRAADGQGPVAVEDNKIFPPRR 307
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
A+MKRSME+LIHHFKLYTEG+ VP GEVYAAVEAPKGEFGV+L+SDG NKPY+CKIRAPG
Sbjct: 308 AEMKRSMEALIHHFKLYTEGFRVPAGEVYAAVEAPKGEFGVFLVSDGSNKPYKCKIRAPG 367
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AHLQAM+F+C+GH LADVSAILGSLDIVFGEVDR
Sbjct: 368 FAHLQAMDFICRGHLLADVSAILGSLDIVFGEVDR 402
>gi|39936014|ref|NP_948290.1| NADH dehydrogenase subunit D [Rhodopseudomonas palustris CGA009]
gi|81562351|sp|Q6N5M5|NUOD_RHOPA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|39649868|emb|CAE28390.1| NADH-ubiquinone dehydrogenase chain D [Rhodopseudomonas palustris
CGA009]
Length = 402
Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats.
Identities = 314/390 (80%), Positives = 355/390 (91%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
R+FTINFGPQHPAAHGVLRL+LELDGE+VERVDPHIGLLHRGTEKLIE KT+LQA+PYFD
Sbjct: 13 RNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEQKTYLQAIPYFD 72
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYVAPMNQEHA+ LAVEKLLGI +P R QLIRVLY+EIGRILSHLLNVTTQAMDVGAL
Sbjct: 73 RLDYVAPMNQEHAFCLAVEKLLGIAVPRRAQLIRVLYAEIGRILSHLLNVTTQAMDVGAL 132
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TPPLWGFEEREKLM+FYERASGSRMHAAYFR GGVHQD+PP+LV+DI WCD+FP+ +ND
Sbjct: 133 TPPLWGFEEREKLMMFYERASGSRMHAAYFRVGGVHQDLPPKLVDDIDAWCDAFPAVVND 192
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ LL+ NRIFKQRNV+IG V L+ AW WGFSGVM+RGSGAAWDLRKSQPYECY+ELDF+
Sbjct: 193 LDRLLSDNRIFKQRNVDIGVVTLDQAWSWGFSGVMVRGSGAAWDLRKSQPYECYAELDFE 252
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+PIGK+GDCYDRY +RM EMR+SV+I++QC+ +L + GPV D KI PP+R +MKR
Sbjct: 253 VPIGKNGDCYDRYHIRMEEMRQSVRIMKQCIAKLRAPHGQGPVVVDDHKIFPPRRGEMKR 312
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
SME+LIHHFKLYTEG+HVP GEVY AVEAPKGEFGVYL+SDG NKPY+CKIRAPG+AHLQ
Sbjct: 313 SMEALIHHFKLYTEGFHVPAGEVYVAVEAPKGEFGVYLVSDGSNKPYKCKIRAPGFAHLQ 372
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AM+FL +GH LADVSAILGSLDIVFGEVDR
Sbjct: 373 AMDFLSRGHLLADVSAILGSLDIVFGEVDR 402
>gi|86357240|ref|YP_469132.1| NADH dehydrogenase subunit D [Rhizobium etli CFN 42]
gi|123512311|sp|Q2K9T1|NUOD1_RHIEC RecName: Full=NADH-quinone oxidoreductase subunit D 1; AltName:
Full=NADH dehydrogenase I subunit D 1; AltName:
Full=NDH-1 subunit D 1
gi|86281342|gb|ABC90405.1| NADH-ubiquinone oxidoreductase chain D protein [Rhizobium etli CFN
42]
Length = 396
Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats.
Identities = 336/396 (84%), Positives = 369/396 (93%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + R+F INFGPQHPAAHGVLRL+LELDGEIVERVDPHIGLLHRGTEKLIETKT+LQ
Sbjct: 1 MTEHNVRNFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIETKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVPYFDRLDYVAPMNQEHAYALAVEKLLGI+IPIRGQLIRVLYSEIGRILSHLLNVTTQA
Sbjct: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIQIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQD+P +LV+DIG WCD F
Sbjct: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDLPEKLVQDIGDWCDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
AL+DI DLLTGNRIFKQRNV+IG V LED W WGFSGVM+RGSGAAWDLR++QPYECY
Sbjct: 181 LKALDDIDDLLTGNRIFKQRNVDIGVVSLEDCWAWGFSGVMVRGSGAAWDLRRAQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
S+L+FDIPIGK+GD YDRYL+RM+EMR+SV+I++QCVNRLL + GP S+ D K+VPPK
Sbjct: 241 SDLEFDIPIGKNGDNYDRYLIRMIEMRQSVRIMKQCVNRLLSDARTGPFSSIDGKVVPPK 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MKRSME+LIHHFKLYTEGYHVP GEVY AVEAPKGEFGVYL+SDG NKPYRCKIRAP
Sbjct: 301 RGEMKRSMEALIHHFKLYTEGYHVPAGEVYTAVEAPKGEFGVYLVSDGSNKPYRCKIRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GYAHLQAM+F+C+GHQLADV+A+LGSLDIVFGEVDR
Sbjct: 361 GYAHLQAMDFMCRGHQLADVAAVLGSLDIVFGEVDR 396
>gi|319782984|ref|YP_004142460.1| NADH dehydrogenase I, D subunit [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317168872|gb|ADV12410.1| NADH dehydrogenase I, D subunit [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 396
Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats.
Identities = 322/396 (81%), Positives = 358/396 (90%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + R+F INFGPQHPAAHGVLRL+LELDGE+V+RVDPHIGLLHRGTEKLIE KT+LQ
Sbjct: 1 MAETSVRNFNINFGPQHPAAHGVLRLVLELDGEVVDRVDPHIGLLHRGTEKLIEAKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVPY DRLDY APMNQEHA+ALA E+LLGIE+P RGQ+IRVLYSEIGRI+SH+LNVTTQA
Sbjct: 61 AVPYLDRLDYCAPMNQEHAFALAAERLLGIEVPKRGQVIRVLYSEIGRIMSHILNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGF EREKLMVFYERASGSRMHAAYFRPGGVHQD+P +LVEDIG W D F
Sbjct: 121 MDVGALTPPLWGFVEREKLMVFYERASGSRMHAAYFRPGGVHQDLPRQLVEDIGKWIDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+++D+ LLTGNRIFKQRNV+IG V L DAW WGFSGVM+RGSGAAWDLRKSQPYECY
Sbjct: 181 LKSIDDLDRLLTGNRIFKQRNVDIGIVSLADAWAWGFSGVMVRGSGAAWDLRKSQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
SE+DFDIPIGK+GDC+DRYLVRM EMR+S KI+RQCV+ LLGK GPVS D K+VPPK
Sbjct: 241 SEMDFDIPIGKNGDCFDRYLVRMEEMRQSAKIMRQCVDLLLGKESTGPVSNLDGKVVPPK 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R MKRSME+LIHHFKLYTEGY VP GEVYAAVEAPKGEFGVYL+SDG NKPYRCK+RAP
Sbjct: 301 RQAMKRSMEALIHHFKLYTEGYRVPAGEVYAAVEAPKGEFGVYLVSDGSNKPYRCKLRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHLQAM+FLC+GH LAD++A+LGSLDIVFGEVDR
Sbjct: 361 GFAHLQAMDFLCRGHMLADITAVLGSLDIVFGEVDR 396
>gi|114764721|ref|ZP_01443906.1| NADH dehydrogenase subunit D [Pelagibaca bermudensis HTCC2601]
gi|114542921|gb|EAU45942.1| NADH dehydrogenase subunit D [Roseovarius sp. HTCC2601]
Length = 410
Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats.
Identities = 291/394 (73%), Positives = 342/394 (86%), Gaps = 1/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ R+F INFGPQHPAAHGVLRL+LELDGEIVER DPHIGLLHRGTEKL+E++T+LQ +
Sbjct: 18 EQQIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNL 77
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV MNQEHA+ LA+E+L G+E+P R QLIRVLY EIGRIL+HLLNVTTQAMD
Sbjct: 78 PYFDRLDYVGTMNQEHAWCLAIERLTGVEVPRRAQLIRVLYCEIGRILNHLLNVTTQAMD 137
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTPPLWGFEEREKLM+FYERA G+R+HAAYFRPGGVHQD+PPEL+ED+ WCD FP+
Sbjct: 138 VGALTPPLWGFEEREKLMIFYERACGARLHAAYFRPGGVHQDLPPELIEDLDTWCDEFPA 197
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L DI DLLT NRIFKQRN +IG V +D +GFSGV++RGSG AWDLR++QPYECY E
Sbjct: 198 RLQDIDDLLTENRIFKQRNADIGVVTEDDIQKYGFSGVLVRGSGLAWDLRRAQPYECYDE 257
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+F IP+GK+GDCYDRYL RM EMRESVKI++Q + +L G V + K+ PPKR+
Sbjct: 258 FEFQIPVGKNGDCYDRYLCRMAEMRESVKIMKQALEKLRLPENQGDVL-ARGKVTPPKRS 316
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SME+LIHHFKLYTEG+HVP GEVYA VEAPKGEFGVYL++DG NKPYR K+RAPG+
Sbjct: 317 EMKTSMEALIHHFKLYTEGFHVPEGEVYACVEAPKGEFGVYLVADGSNKPYRAKLRAPGF 376
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQAM+++CKGHQLADV+AILGSLDIVFGEVDR
Sbjct: 377 LHLQAMDYICKGHQLADVAAILGSLDIVFGEVDR 410
>gi|296444797|ref|ZP_06886760.1| NADH dehydrogenase I, D subunit [Methylosinus trichosporium OB3b]
gi|296257745|gb|EFH04809.1| NADH dehydrogenase I, D subunit [Methylosinus trichosporium OB3b]
Length = 396
Score = 464 bits (1195), Expect = e-129, Method: Composition-based stats.
Identities = 297/396 (75%), Positives = 347/396 (87%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M+ + R+F +NFGPQHPAAHGVLRLILELDGE+VER DPH+G LHRGTEKL+E +T+LQ
Sbjct: 1 MNDQSLRNFNLNFGPQHPAAHGVLRLILELDGEVVERCDPHVGFLHRGTEKLMEARTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
VPYFDRLDY +PMNQEHA+ L +E+LLG+E+P RGQLIRVLY+EIGR+LSHLLNVT+QA
Sbjct: 61 NVPYFDRLDYCSPMNQEHAFCLGIERLLGVEVPRRGQLIRVLYAEIGRLLSHLLNVTSQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWG+EEREKLMVFYERASG+RMHA YFRPGGV +D+P +LVEDIG +CD F
Sbjct: 121 MDVGALTPPLWGYEEREKLMVFYERASGARMHANYFRPGGVARDLPDQLVEDIGAFCDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+D+ +L GNRIFKQRN +IG + LEDAW +GFSGVM+RGSGA WDLRKSQPY+CY
Sbjct: 181 LKVCDDLEELFIGNRIFKQRNADIGVISLEDAWKYGFSGVMVRGSGAPWDLRKSQPYDCY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E++FDIPIGK+GDCYDR ++RM EMR+S I++QCV +LL GPV+A + KI P
Sbjct: 241 EEMEFDIPIGKNGDCYDRAVIRMEEMRQSTSIMKQCVEKLLKPENRGPVAAVNNKICSPP 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
RA+MKRSME+LIHHFKLYTEG+ VP GEVYAAVEAPKGEFGVYL+SDGG+KPYRCKIRAP
Sbjct: 301 RAEMKRSMEALIHHFKLYTEGFKVPAGEVYAAVEAPKGEFGVYLVSDGGDKPYRCKIRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHLQAM+FLCK H LADVSAILGSLDIVFGEVDR
Sbjct: 361 GFAHLQAMDFLCKNHLLADVSAILGSLDIVFGEVDR 396
>gi|146341112|ref|YP_001206160.1| NADH dehydrogenase subunit D [Bradyrhizobium sp. ORS278]
gi|218534455|sp|A4YVK9|NUOD_BRASO RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|146193918|emb|CAL77935.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
(NDH-1, chain D) [Bradyrhizobium sp. ORS278]
Length = 398
Score = 464 bits (1195), Expect = e-129, Method: Composition-based stats.
Identities = 314/398 (78%), Positives = 360/398 (90%), Gaps = 2/398 (0%)
Query: 1 MDKKKS--RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTF 58
M+++ R+FTINFGPQHPAAHGVLRL+LELDGE+VERVDPHIGLLHRGTEKLIETKT+
Sbjct: 1 MNEQSPALRNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIETKTY 60
Query: 59 LQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTT 118
LQA+PYFDRLDYVAPMNQEHA+ LA E+LLGIE+P RGQLIRVLYSEIGR+LSHLLNVTT
Sbjct: 61 LQAMPYFDRLDYVAPMNQEHAFCLAAERLLGIEVPRRGQLIRVLYSEIGRLLSHLLNVTT 120
Query: 119 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHA YFR GGVHQD+PP+LV+DI +CD
Sbjct: 121 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHANYFRIGGVHQDLPPKLVDDIDAFCD 180
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
F ++D+ LLTGNRIFKQRNV+IG V L+ AW WGFSGVM+RGSGAAWDLRKSQPY+
Sbjct: 181 PFLKVVDDLDQLLTGNRIFKQRNVDIGVVTLKQAWEWGFSGVMVRGSGAAWDLRKSQPYD 240
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
Y+E++FDIPIGK+GDCYDRYL+RM EMR+SV+I++QC+ +L + GPV +D KI P
Sbjct: 241 VYAEMEFDIPIGKNGDCYDRYLIRMEEMRQSVRIMKQCIAKLRAPDGQGPVLITDNKIAP 300
Query: 299 PKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
P+R +MKRSME+LIHHFKLYTEG HVP GE+YAAVEAPKGEFGVYL++DG NKPY+CKIR
Sbjct: 301 PRRGEMKRSMEALIHHFKLYTEGVHVPAGEIYAAVEAPKGEFGVYLVADGTNKPYKCKIR 360
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
APG+AHLQAM+FLC+GH LADVSAILGSLDIVFGEVDR
Sbjct: 361 APGFAHLQAMDFLCRGHLLADVSAILGSLDIVFGEVDR 398
>gi|85717027|ref|ZP_01047989.1| NADH dehydrogenase delta subunit [Nitrobacter sp. Nb-311A]
gi|85696151|gb|EAQ34047.1| NADH dehydrogenase delta subunit [Nitrobacter sp. Nb-311A]
Length = 402
Score = 464 bits (1195), Expect = e-129, Method: Composition-based stats.
Identities = 313/390 (80%), Positives = 354/390 (90%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
R+FTINFGPQHPAAHGVLRL+LELDGE+VERVDPHIGLLHRGTEKLIE KT+LQA+PYFD
Sbjct: 13 RNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEQKTYLQAIPYFD 72
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYVAPMNQEHA+ LA E+LLGI +P RGQLIRVLY EIGRILSHLLNVTTQAMDVGAL
Sbjct: 73 RLDYVAPMNQEHAFCLAAERLLGIAVPRRGQLIRVLYCEIGRILSHLLNVTTQAMDVGAL 132
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TPPLWGFEEREKLM+FYERASGSRMHAAYFR GGVHQD+PP+L+ DI WCD F + D
Sbjct: 133 TPPLWGFEEREKLMMFYERASGSRMHAAYFRIGGVHQDLPPKLINDIEAWCDPFLQVVAD 192
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ LLT NRIFKQRNV+IG V L+ AW WGFSGVM+RGSGAAWDLRK+QPYECY+E+DFD
Sbjct: 193 LDRLLTANRIFKQRNVDIGVVTLKQAWEWGFSGVMVRGSGAAWDLRKAQPYECYAEMDFD 252
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
IPIGK+GDCYDRYL+RM EMR+SV+I++QC+ +L + GPV+ D KI PP+R++MKR
Sbjct: 253 IPIGKNGDCYDRYLIRMEEMRQSVRIMKQCIAKLRAPDGQGPVAVEDNKIFPPRRSEMKR 312
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
SME+LIHHFKLYTEG+HVP GE+YAAVEAPKGEFGVYL+SDG NKPY+CKIRAPG+AHLQ
Sbjct: 313 SMEALIHHFKLYTEGFHVPAGEIYAAVEAPKGEFGVYLVSDGSNKPYKCKIRAPGFAHLQ 372
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AM+FLC+GH LADVSAILGSLDIVFGEVDR
Sbjct: 373 AMDFLCRGHLLADVSAILGSLDIVFGEVDR 402
>gi|88607271|ref|YP_505312.1| NADH dehydrogenase subunit D [Anaplasma phagocytophilum HZ]
gi|123494995|sp|Q2GJY9|NUOD_ANAPZ RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|88598334|gb|ABD43804.1| NADH dehydrogenase I, D subunit [Anaplasma phagocytophilum HZ]
Length = 395
Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats.
Identities = 252/390 (64%), Positives = 313/390 (80%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+ TINFGPQHPAAHGV+RLILE+ GE++ER+DPHIGLLHRGTEKLIE KT+LQA+PYFD
Sbjct: 10 KPMTINFGPQHPAAHGVMRLILEMSGEVIERIDPHIGLLHRGTEKLIEYKTYLQALPYFD 69
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYV+PM+QEHAY+L VE+LLG E+PIR + +RV++ E+ R+L+HLLNV QA+D GA
Sbjct: 70 RLDYVSPMSQEHAYSLCVERLLGCEVPIRAKYLRVIFCELTRLLNHLLNVACQALDSGAT 129
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP LW FEEREK++ FYERASG+R H+AY RPGG+ D+P L++DI + + FP L+
Sbjct: 130 TPLLWIFEEREKILSFYERASGARFHSAYIRPGGLAADVPDGLLDDIHEFTNYFPKLLDS 189
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ DLLT N I+KQRNV IG V + A WGFSG M+R G WDLRKSQPYE Y LDF
Sbjct: 190 VDDLLTENSIWKQRNVEIGKVTKQQALDWGFSGPMLRACGIPWDLRKSQPYEIYDILDFK 249
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+P+G +GDCYDRYLVRM E+RES+ I+ QC+ + GPV D KI PPKR ++K
Sbjct: 250 VPVGSNGDCYDRYLVRMAEIRESLYILEQCLRDI----PSGPVKTDDRKIAPPKREELKY 305
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
SME+LIHHFKL++EGY VP GE YAAVEAPKGEFGVY++SDG NKPYRC+IR+PG+AHLQ
Sbjct: 306 SMEALIHHFKLFSEGYKVPEGEAYAAVEAPKGEFGVYIVSDGTNKPYRCRIRSPGFAHLQ 365
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A++ + +GH LAD+ I+GSLDIVFGE+DR
Sbjct: 366 AIDAMARGHMLADLPVIIGSLDIVFGEIDR 395
>gi|75676076|ref|YP_318497.1| NADH dehydrogenase subunit D [Nitrobacter winogradskyi Nb-255]
gi|123613266|sp|Q3SRE6|NUOD_NITWN RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|74420946|gb|ABA05145.1| NADH dehydrogenase subunit D [Nitrobacter winogradskyi Nb-255]
Length = 402
Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats.
Identities = 313/390 (80%), Positives = 353/390 (90%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
R+FTINFGPQHPAAHGVLRL+LELDGE+VERVDPHIGLLHRGTEKLIE KT+LQA+PYFD
Sbjct: 13 RNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEQKTYLQAIPYFD 72
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYVAPMNQEHA+ LA E+LLGI +P RGQLIRVLY EIGRILSHLLNVTTQAMDVGAL
Sbjct: 73 RLDYVAPMNQEHAFCLAAERLLGIAVPRRGQLIRVLYCEIGRILSHLLNVTTQAMDVGAL 132
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TPPLWGFEEREKLM+FYERASGSRMHAAYFR GGVHQD+PP L++DI WCD F + D
Sbjct: 133 TPPLWGFEEREKLMMFYERASGSRMHAAYFRIGGVHQDLPPRLIDDIEAWCDPFLQVVAD 192
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ LLT NRIFKQRNV+IG V LE AW WGFSGVM+RGSGAAWDLRK+QPYECY+E+DFD
Sbjct: 193 LDRLLTANRIFKQRNVDIGVVTLEQAWEWGFSGVMVRGSGAAWDLRKAQPYECYAEMDFD 252
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
IPIGK+GDCYDRYL+RM EMR+SV+I++QC+ +L + GPV+ D KI PP+R +MKR
Sbjct: 253 IPIGKNGDCYDRYLIRMEEMRQSVRIMKQCIAKLRAPDGQGPVAVEDNKIFPPRRGEMKR 312
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
SME+LIHHFKLYTEG+HVP GE+YAAVEAPKGEFGVYL+SDG NKPY+CKIRAPG+AHLQ
Sbjct: 313 SMEALIHHFKLYTEGFHVPAGEIYAAVEAPKGEFGVYLVSDGSNKPYKCKIRAPGFAHLQ 372
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AM+F+C+GH LADVSAILGSLDIVFGEVDR
Sbjct: 373 AMDFICRGHLLADVSAILGSLDIVFGEVDR 402
>gi|116251469|ref|YP_767307.1| NADH dehydrogenase subunit D [Rhizobium leguminosarum bv. viciae
3841]
gi|218534452|sp|Q1MIL2|NUOD_RHIL3 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|115256117|emb|CAK07198.1| putative NADH-quinone oxidoreductase subunit [Rhizobium
leguminosarum bv. viciae 3841]
Length = 396
Score = 464 bits (1193), Expect = e-128, Method: Composition-based stats.
Identities = 336/396 (84%), Positives = 370/396 (93%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + R+F INFGPQHPAAHGVLRL+LELDGEIVERVDPHIGLLHRGTEKLIETKT+LQ
Sbjct: 1 MTEHNVRNFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIETKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVPYFDRLDYVAPMNQEHAYA+AVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA
Sbjct: 61 AVPYFDRLDYVAPMNQEHAYAMAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQD+P +LV+DIG WCD F
Sbjct: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDLPEQLVQDIGAWCDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
AL+DI +LLTGNRIFKQRNV+IG V L++ W WGFSGVM+RGSGAAWDLR++QPYECY
Sbjct: 181 LKALDDIDNLLTGNRIFKQRNVDIGVVSLDECWAWGFSGVMVRGSGAAWDLRRAQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
S+L+FDIPIGK+GD YDRYL+RM+EMRESV+I++QCVNRLL K GP S+ D K+VPPK
Sbjct: 241 SDLEFDIPIGKNGDNYDRYLIRMIEMRESVRIMKQCVNRLLSDAKTGPFSSIDGKVVPPK 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MKRSME+LIHHFKLYTEGYHVP GEVYAAVEAPKGEFGVYL+SDG NKPYRCKIRAP
Sbjct: 301 RGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYLVSDGTNKPYRCKIRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GYAHLQAM+F+C+GHQLADV+A+LGSLDIVFGEVDR
Sbjct: 361 GYAHLQAMDFMCRGHQLADVAAVLGSLDIVFGEVDR 396
>gi|82658272|ref|NP_001032494.1| hypothetical protein LOC641476 [Danio rerio]
gi|81097702|gb|AAI09438.1| Zgc:123301 [Danio rerio]
Length = 462
Score = 464 bits (1193), Expect = e-128, Method: Composition-based stats.
Identities = 253/394 (64%), Positives = 317/394 (80%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+KK + +NFGPQHPAAHGVLRL+LELDGE V R DPHIGLLHRGTEKLIE KT++QA+
Sbjct: 73 EKKVANLQLNFGPQHPAAHGVLRLVLELDGETVLRADPHIGLLHRGTEKLIEYKTYMQAL 132
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E Y+LAVEKLL +E+P+R + IR +++EI RIL+HL+ V T A+D
Sbjct: 133 PYFDRLDYVSMMCNEQCYSLAVEKLLNLEVPLRAKYIRTMFAEITRILNHLMQVGTHALD 192
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GALTP W FEEREK+M FYER SG+RMHAAY RPGGV+ D+P L++DI + F
Sbjct: 193 IGALTPFFWLFEEREKMMEFYERVSGARMHAAYVRPGGVYLDLPLGLMDDIYTFIKQFGQ 252
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+++ D+LT NRI+KQR V+IG V EDA WGFSGVM+RGSG WDLRKSQPY+ Y
Sbjct: 253 RLDEVEDVLTENRIWKQRTVDIGVVSAEDALNWGFSGVMLRGSGIKWDLRKSQPYDAYDV 312
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+DFDIPIG GDCYDRYL RM EMR+S++II QC+N++ G + A D K+VPPKR
Sbjct: 313 VDFDIPIGTKGDCYDRYLCRMEEMRQSLRIIEQCLNKMPA----GEIRADDSKVVPPKRG 368
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SMESLIHHFKLYTEG++VP G+ Y A+EAPKGEFGVYL+SDG ++PYRCKI+APG+
Sbjct: 369 EMKSSMESLIHHFKLYTEGFNVPPGQTYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGF 428
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL A++++ + H LAD+ AI+G+LD+VFGE+DR
Sbjct: 429 AHLAALDYIGRNHMLADIVAIIGTLDVVFGEIDR 462
>gi|220924008|ref|YP_002499310.1| NADH dehydrogenase I subunit D [Methylobacterium nodulans ORS 2060]
gi|219948615|gb|ACL59007.1| NADH dehydrogenase I, D subunit [Methylobacterium nodulans ORS
2060]
Length = 396
Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats.
Identities = 292/396 (73%), Positives = 347/396 (87%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + R+F+INFGPQHPAAHGVLRL+LELDGEIVERVDPHIGLLHRGTEKLIE KT+LQ
Sbjct: 1 MTEHSIRNFSINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIEYKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A PYFDRLDYVAPMNQEHA+ LAVEKLLGIE+P R +LIR LY EIGR+LSHLLNVTTQA
Sbjct: 61 ATPYFDRLDYVAPMNQEHAFCLAVEKLLGIEVPRRAKLIRTLYCEIGRLLSHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLM+FYERASG+R+HA YFRPGGVHQD+P L++DI +C++F
Sbjct: 121 MDVGALTPPLWGFEEREKLMIFYERASGARLHANYFRPGGVHQDLPAGLLDDIEAFCETF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P ++D+ +L+ GNRIFKQRNV+IG V + A WGFSGVM+RGSG WDLRK+QPYE Y
Sbjct: 181 PQVVDDLDELVIGNRIFKQRNVDIGIVTADQAMAWGFSGVMVRGSGIPWDLRKAQPYESY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E++F+IP+GK+GD YDR ++RM EMR+SV+I++QC+ +L + GPV+ D K+ PP
Sbjct: 241 EEMEFEIPVGKNGDTYDRQVIRMEEMRQSVRIMKQCIAKLRAPDGQGPVATQDGKVAPPS 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MKRSME+LIHHFKLYTEG+HVP GEVYAAVEAPKGEFGVYL++DG NKPYRCKIRAP
Sbjct: 301 RREMKRSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKGEFGVYLVADGTNKPYRCKIRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHLQAM+++C+GH LADVS I+G+LDIVFGEVDR
Sbjct: 361 GFAHLQAMDWMCRGHMLADVSCIIGTLDIVFGEVDR 396
>gi|241204089|ref|YP_002975185.1| NADH dehydrogenase subunit D [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240857979|gb|ACS55646.1| NADH dehydrogenase I, D subunit [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 396
Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats.
Identities = 335/396 (84%), Positives = 369/396 (93%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + R+F INFGPQHPAAHGVLRL+LELDGEIVERVDPHIGLLHRGTEKLIETKT+LQ
Sbjct: 1 MTEHNVRNFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIETKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVPYFDRLDYVAPMNQEHAYA+AVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA
Sbjct: 61 AVPYFDRLDYVAPMNQEHAYAMAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAY RPGGVHQD+P +LV+DIG WCD F
Sbjct: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYIRPGGVHQDLPEQLVQDIGAWCDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
AL+DI +LLTGNRIFKQRNV+IG V LE+ W WGFSGVM+RGSGAAWDLR++QPYECY
Sbjct: 181 LKALDDIDNLLTGNRIFKQRNVDIGVVSLEECWAWGFSGVMVRGSGAAWDLRRAQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
S+L+FDIPIGK+GD YDRYL+RM+EMRESV+I++QCVNRLL + GP S+ D K+VPPK
Sbjct: 241 SDLEFDIPIGKNGDNYDRYLIRMIEMRESVRIMKQCVNRLLSDARTGPFSSIDGKVVPPK 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MKRSME+LIHHFKLYTEGYHVP GEVYAAVEAPKGEFGVYL+SDG NKPYRCKIRAP
Sbjct: 301 RGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYLVSDGTNKPYRCKIRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GYAHLQAM+F+C+GHQLADV+A+LGSLDIVFGEVDR
Sbjct: 361 GYAHLQAMDFMCRGHQLADVAAVLGSLDIVFGEVDR 396
>gi|182679350|ref|YP_001833496.1| NADH dehydrogenase I, D subunit [Beijerinckia indica subsp. indica
ATCC 9039]
gi|218534355|sp|B2IHW4|NUOD1_BEII9 RecName: Full=NADH-quinone oxidoreductase subunit D 1; AltName:
Full=NADH dehydrogenase I subunit D 1; AltName:
Full=NDH-1 subunit D 1
gi|182635233|gb|ACB96007.1| NADH dehydrogenase I, D subunit [Beijerinckia indica subsp. indica
ATCC 9039]
Length = 396
Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats.
Identities = 302/396 (76%), Positives = 345/396 (87%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M+ R+F INFGPQHPAAHGVLRL+LELDGE+VERVDPHIGLLHRGTEKL+E +T+LQ
Sbjct: 1 MNDNPVRNFAINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLMEARTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
VPYFDRLDYVAPMNQEHA+ LA+EKLLGIE+P RGQL+RVL+ EIGRILSHLLNVTTQA
Sbjct: 61 NVPYFDRLDYVAPMNQEHAFCLAIEKLLGIEVPRRGQLLRVLWCEIGRILSHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLMVFYERASG+RMHA YFRPGGVH D P +L++DIG WCD F
Sbjct: 121 MDVGALTPPLWGFEEREKLMVFYERASGARMHANYFRPGGVHIDCPQQLIDDIGAWCDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+D++DL NRIFKQRNV+IG + LED W WGFSGVM+RGSGAAWDLRK+QPYECY
Sbjct: 181 LKVCDDLNDLFIENRIFKQRNVDIGVISLEDCWRWGFSGVMVRGSGAAWDLRKAQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E+DFDIP+G+HGD YDR ++RM EMR+S KI++QCV +L + GPV+ K+VPP
Sbjct: 241 EEMDFDIPVGRHGDNYDRQVIRMEEMRQSTKIMKQCVEKLSQASGKGPVATPQHKVVPPS 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
RA+MKRSME+LIHHFKLYTEG+HVP GEVY VEAPKGEFGVYL+SDG +KPYRCKIRAP
Sbjct: 301 RAEMKRSMEALIHHFKLYTEGFHVPAGEVYCGVEAPKGEFGVYLVSDGTDKPYRCKIRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHL AM+FLC+ LADVSAILGSLDIVFGEVDR
Sbjct: 361 GFAHLSAMDFLCRKSMLADVSAILGSLDIVFGEVDR 396
>gi|209885055|ref|YP_002288912.1| d subunit of NADH dehydrogenase (quinone) [Oligotropha
carboxidovorans OM5]
gi|229891292|sp|B6JGW3|NUOD_OLICO RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|209873251|gb|ACI93047.1| d subunit of NADH dehydrogenase (quinone) [Oligotropha
carboxidovorans OM5]
Length = 405
Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats.
Identities = 310/395 (78%), Positives = 355/395 (89%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
D +R+FTINFGPQHPAAHGVLRL+LELDGE+VERVDPHIGLLHRGTEKLIE KT+LQA
Sbjct: 11 DAPGTRNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEQKTYLQA 70
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+PYFDRLDYVAPMNQEHA+ LA EKLLGI +P RGQLIRVLYSEIGRILSHLLN+TTQA+
Sbjct: 71 IPYFDRLDYVAPMNQEHAFCLAAEKLLGITVPRRGQLIRVLYSEIGRILSHLLNITTQAL 130
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
DVGALTPPLWGFEEREKLM+FYERASGSRMHAA+FR GGVHQD+PP+L+ DI WCD+FP
Sbjct: 131 DVGALTPPLWGFEEREKLMMFYERASGSRMHAAFFRIGGVHQDLPPKLIGDIDIWCDAFP 190
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
L+D+ LLT NRIFKQRNV+IG V L+ AW WGFSGVM+RGSGAAWDLR++QPYECY
Sbjct: 191 EKLDDLEILLTDNRIFKQRNVDIGVVTLDQAWEWGFSGVMVRGSGAAWDLRRAQPYECYD 250
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
E++FDIPIGK+GDCYDRY +R+ EMR+SV+I++QC+ ++ + GPV D KI PP+R
Sbjct: 251 EMEFDIPIGKNGDCYDRYCIRVEEMRQSVRIMKQCIAKMRAPDGQGPVVIEDNKITPPRR 310
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+MKRSME+LIHHFKLYTEG HVP GEVYAAVEAPKGEFGVYL++DG NKPY+CKIRAPG
Sbjct: 311 GEMKRSMEALIHHFKLYTEGVHVPPGEVYAAVEAPKGEFGVYLVADGTNKPYKCKIRAPG 370
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AHLQAM+F+CKGH LADVSAILGSLDIVFGEVDR
Sbjct: 371 FAHLQAMDFICKGHLLADVSAILGSLDIVFGEVDR 405
>gi|90417840|ref|ZP_01225752.1| NADH dehydrogenase I, D subunit [Aurantimonas manganoxydans
SI85-9A1]
gi|90337512|gb|EAS51163.1| NADH dehydrogenase I, D subunit [Aurantimonas manganoxydans
SI85-9A1]
Length = 396
Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats.
Identities = 319/396 (80%), Positives = 359/396 (90%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + R+F INFGPQHPAAHGVLRL++ELDGEIVERVDPHIGLLHRGTEKLIE KT+LQ
Sbjct: 1 MAEIDVRNFNINFGPQHPAAHGVLRLVVELDGEIVERVDPHIGLLHRGTEKLIEHKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
++PYFDRLDYVAPMNQEHA+ LAVE+L G+E+P RGQLIRVLYSEIGRILSHLLNVTTQA
Sbjct: 61 SIPYFDRLDYVAPMNQEHAFCLAVERLTGVEVPKRGQLIRVLYSEIGRILSHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLMVFYERASGSR+HAAYFRPGGVH D+P +L+EDIG WCD F
Sbjct: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRLHAAYFRPGGVHADLPQQLIEDIGAWCDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+DI LLT NRIFKQRNV+IG V +EDAW GFSGVMIRGSG AWDLRKSQPYECY
Sbjct: 181 LKVCDDIEGLLTDNRIFKQRNVDIGVVGIEDAWAMGFSGVMIRGSGVAWDLRKSQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E+DFDIP+GK+GDCYDRYL+RM+EMRESVKI++QC+ +L G++ GPVSA++ KIVPPK
Sbjct: 241 DEMDFDIPVGKNGDCYDRYLIRMIEMRESVKIMKQCIAQLTGEHSTGPVSATEGKIVPPK 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R MKRSME+LIHHFKLYTEG+HVP GEVYAAVEAPKGEFGVYL++DG NKPYRCKI+AP
Sbjct: 301 RGQMKRSMEALIHHFKLYTEGFHVPEGEVYAAVEAPKGEFGVYLVADGTNKPYRCKIKAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHLQAM+ LC+GH LADVSAILG+LDIVFGEVDR
Sbjct: 361 GFAHLQAMDMLCRGHMLADVSAILGTLDIVFGEVDR 396
>gi|316933894|ref|YP_004108876.1| NADH dehydrogenase I subunit D [Rhodopseudomonas palustris DX-1]
gi|315601608|gb|ADU44143.1| NADH dehydrogenase I, D subunit [Rhodopseudomonas palustris DX-1]
Length = 402
Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats.
Identities = 312/395 (78%), Positives = 356/395 (90%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
D R+FTINFGPQHPAAHGVLRL+LELDGE+VERVDPHIGLLHRGTEKLIE KT+LQA
Sbjct: 8 DAPSVRNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEAKTYLQA 67
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+PYFDRLDYVAPMNQEHA+ LAVEKLLGI +P R QLIRVLY+EIGRILSHLLNVTTQAM
Sbjct: 68 IPYFDRLDYVAPMNQEHAFCLAVEKLLGIAVPRRAQLIRVLYAEIGRILSHLLNVTTQAM 127
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
DVGALTPPLWGFEEREKLM+FYERASGSRMHAAYFR GGVHQD+PP+L++DI WCD+FP
Sbjct: 128 DVGALTPPLWGFEEREKLMMFYERASGSRMHAAYFRVGGVHQDLPPKLIDDIDAWCDAFP 187
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+ ++D+ LL+ NRIFKQRNV+IG V L+ AW WGFSGVM+RGSGAAWDLRKSQPYECY+
Sbjct: 188 AVVDDLDRLLSDNRIFKQRNVDIGVVTLDQAWAWGFSGVMVRGSGAAWDLRKSQPYECYA 247
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
ELDF++PIGK+GDCYDRY +RM EMR+SV+I++QC+ RL + GPV D KI PP+R
Sbjct: 248 ELDFEVPIGKNGDCYDRYHIRMEEMRQSVRIMKQCIARLRAPDGQGPVVVDDHKIFPPRR 307
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+MKRSME+LIHHFKLYTEG+HVP GEVY AVEAPKGEFGV+L+SDG NKPY+CK+RAPG
Sbjct: 308 GEMKRSMEALIHHFKLYTEGFHVPAGEVYVAVEAPKGEFGVFLVSDGTNKPYKCKVRAPG 367
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AHLQAM+FL +GH LADVSAILGSLDIVFGEVDR
Sbjct: 368 FAHLQAMDFLSRGHLLADVSAILGSLDIVFGEVDR 402
>gi|260426567|ref|ZP_05780546.1| NADH dehydrogenase (quinone), d subunit [Citreicella sp. SE45]
gi|260421059|gb|EEX14310.1| NADH dehydrogenase (quinone), d subunit [Citreicella sp. SE45]
Length = 410
Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats.
Identities = 292/394 (74%), Positives = 342/394 (86%), Gaps = 1/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++K R+F INFGPQHPAAHGVLRL+LELDGEIVER DPHIGLLHRGTEKL+E++T+LQ +
Sbjct: 18 EQKIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNL 77
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV MNQEHA+ +A+E+L G+E+P R QLIRVLY EIGRIL+HLLNVTTQAMD
Sbjct: 78 PYFDRLDYVGTMNQEHAWCIAIERLTGVEVPRRAQLIRVLYCEIGRILNHLLNVTTQAMD 137
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTPPLWGFEEREKLMVFYERA G+R+HAAYFRPGGVHQD+PP+L++DI WCD FP+
Sbjct: 138 VGALTPPLWGFEEREKLMVFYERACGARLHAAYFRPGGVHQDLPPKLIDDIDAWCDQFPA 197
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L DI DLLT NRIFKQRN +IG + +D G+SGVM+RGSG AWDLR++QPYECY E
Sbjct: 198 RLQDIDDLLTENRIFKQRNADIGVITEQDIQEHGYSGVMVRGSGLAWDLRRAQPYECYDE 257
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+F IP+GK+GDCYDRYL RM EMRESVKI++Q V +L G V + KI PPKR+
Sbjct: 258 FEFKIPVGKNGDCYDRYLCRMAEMRESVKIMKQAVEKLRMPENQGDVL-ARGKITPPKRS 316
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SME+LIHHFKLYTEG+HVP GEVYAAVEAPKGEFGVYL++DG NKPYR K+RAPG+
Sbjct: 317 EMKTSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKGEFGVYLVADGSNKPYRAKLRAPGF 376
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ+M+++CKGHQLADV+AILGSLDIVFGEVDR
Sbjct: 377 LHLQSMDYVCKGHQLADVAAILGSLDIVFGEVDR 410
>gi|27380027|ref|NP_771556.1| NADH dehydrogenase subunit D [Bradyrhizobium japonicum USDA 110]
gi|81736773|sp|Q89KI9|NUOD_BRAJA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|27353181|dbj|BAC50181.1| NADH ubiquinone oxidoreductase chain D [Bradyrhizobium japonicum
USDA 110]
Length = 398
Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats.
Identities = 315/398 (79%), Positives = 355/398 (89%), Gaps = 2/398 (0%)
Query: 1 MDK--KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTF 58
M++ + R+FTINFGPQHPAAHGVLRL+LELDGEIV RVDPHIGLLHRGTEKLIE KT+
Sbjct: 1 MNEQPENLRNFTINFGPQHPAAHGVLRLVLELDGEIVARVDPHIGLLHRGTEKLIEQKTY 60
Query: 59 LQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTT 118
LQA+PYFDRLDYVAPMNQEHA+ LA EKLLGIE+P RGQLIRVLY EIGRILSHLLNVTT
Sbjct: 61 LQAIPYFDRLDYVAPMNQEHAFCLAAEKLLGIEVPRRGQLIRVLYCEIGRILSHLLNVTT 120
Query: 119 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAA+FR GGVHQD+P +LV+DI WCD
Sbjct: 121 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAFFRVGGVHQDLPQKLVDDIEAWCD 180
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
F ++D+ LLT NRIFKQRNV+IG V L++AW WGFSGVM+RGSGAAWDLRKSQPYE
Sbjct: 181 PFLKVVDDLDRLLTANRIFKQRNVDIGVVPLKEAWEWGFSGVMVRGSGAAWDLRKSQPYE 240
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
CY+E+DFDIPIGK+GDCYDRYL+RM EMR+SV+I+RQC+ +L GPV D K+ P
Sbjct: 241 CYAEMDFDIPIGKNGDCYDRYLIRMEEMRQSVRIMRQCIQKLNAPEGKGPVVVEDNKVAP 300
Query: 299 PKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
P+R +MKRSME+LIHHFKLYTEG HVP GEVYAAVEAPKGEFGVYL++DG NKPY+CKIR
Sbjct: 301 PRRGEMKRSMEALIHHFKLYTEGVHVPAGEVYAAVEAPKGEFGVYLVADGTNKPYKCKIR 360
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
APG+AHLQAM+ +C+GH LADVSAILGSLDIVFGEVDR
Sbjct: 361 APGFAHLQAMDHICRGHLLADVSAILGSLDIVFGEVDR 398
>gi|15965020|ref|NP_385373.1| NADH dehydrogenase subunit D [Sinorhizobium meliloti 1021]
gi|307301092|ref|ZP_07580861.1| NADH dehydrogenase I, D subunit [Sinorhizobium meliloti BL225C]
gi|307317826|ref|ZP_07597264.1| NADH dehydrogenase I, D subunit [Sinorhizobium meliloti AK83]
gi|7387955|sp|P56907|NUOD1_RHIME RecName: Full=NADH-quinone oxidoreductase subunit D 1; AltName:
Full=NADH dehydrogenase I subunit D 1; AltName:
Full=NDH-1 subunit D 1
gi|5650737|emb|CAB51623.1| nuoD1 [Sinorhizobium meliloti]
gi|15074199|emb|CAC45846.1| Probable NADH-quinone oxidoreductase subunit D 1 [Sinorhizobium
meliloti 1021]
gi|306896588|gb|EFN27336.1| NADH dehydrogenase I, D subunit [Sinorhizobium meliloti AK83]
gi|306904047|gb|EFN34633.1| NADH dehydrogenase I, D subunit [Sinorhizobium meliloti BL225C]
Length = 396
Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats.
Identities = 332/396 (83%), Positives = 368/396 (92%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + R+F INFGPQHPAAHGVLRL+LELDGEIVERVDPHIGLLHRGTEKLIE KT+LQ
Sbjct: 1 MTEHNVRNFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIEAKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYVAPMNQEHA+ALAVE+L G ++PIRGQLIRVLYSEIGRILSHLLNVTTQA
Sbjct: 61 AIPYFDRLDYVAPMNQEHAFALAVERLTGTQVPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLMVFYERA G+RMHAAYFRPGGVHQD+P +LVEDIG W D F
Sbjct: 121 MDVGALTPPLWGFEEREKLMVFYERACGARMHAAYFRPGGVHQDLPHQLVEDIGNWIDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
++DI +LLTGNRIFKQRNV+IG V LEDAW WGFSGVM+RGSGAAWDLR+SQPYECY
Sbjct: 181 LKTVDDIDELLTGNRIFKQRNVDIGVVSLEDAWAWGFSGVMVRGSGAAWDLRRSQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
S+L+FDIPIGK+GDC+DRYL+RM+EMR+S +I+RQCV+RLLG K+GPVS+ D KIVPPK
Sbjct: 241 SDLEFDIPIGKNGDCFDRYLIRMIEMRQSARIMRQCVDRLLGDAKIGPVSSLDGKIVPPK 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MKRSME+LIHHFKLYTEGYHVP GEVYAAVEAPKGEFGVYL+SDG NKPYRCKIRAP
Sbjct: 301 RGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYLVSDGTNKPYRCKIRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GYAHLQAM+FLC+GHQLADVSA+LGSLDIVFGEVDR
Sbjct: 361 GYAHLQAMDFLCRGHQLADVSAVLGSLDIVFGEVDR 396
>gi|170748475|ref|YP_001754735.1| NADH dehydrogenase I, D subunit [Methylobacterium radiotolerans JCM
2831]
gi|218534418|sp|B1LUN4|NUOD_METRJ RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|170654997|gb|ACB24052.1| NADH dehydrogenase I, D subunit [Methylobacterium radiotolerans JCM
2831]
Length = 396
Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats.
Identities = 292/396 (73%), Positives = 346/396 (87%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + R+F INFGPQHPAAHGVLRL+LELDGE+VERVDPHIGLLHRGTEKLIE KT+LQ
Sbjct: 1 MTEHNIRNFAINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEYKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A PYFDRLDYV+PMNQEHA+ LA+EKL GIE+P R QLIRVL+ EIGR+LSHLLNVTTQA
Sbjct: 61 ATPYFDRLDYVSPMNQEHAFCLAIEKLAGIEVPRRAQLIRVLFCEIGRLLSHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLM+FYERASG+R+HA YFRPGGVHQD+PP+L++DI +CD F
Sbjct: 121 MDVGALTPPLWGFEEREKLMIFYERASGARLHANYFRPGGVHQDLPPKLIDDIDAFCDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ D+ DL+ NRIFKQRNV+IG V +++A WGFSGVM+RGSG WDLRK+QPYECY
Sbjct: 181 LQVVQDLDDLVMANRIFKQRNVDIGIVSVDEAMQWGFSGVMVRGSGIPWDLRKAQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E++FD+P+GK+GD YDR ++RM EMR+SV+I++QCV +L GP+++ D K PP
Sbjct: 241 EEMEFDVPVGKNGDTYDRQVIRMEEMRQSVRIMKQCVAKLREPAGQGPIASVDGKFAPPP 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MKRSME+LIHHFKLYTEG+HVP GEVYAAVEAPKGEFGVYL+SDG NKPYRCKIRAP
Sbjct: 301 RREMKRSMEALIHHFKLYTEGFHVPEGEVYAAVEAPKGEFGVYLVSDGTNKPYRCKIRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHLQAM+++C+GH LADVS +LG+LDIVFGEVDR
Sbjct: 361 GFAHLQAMDWMCRGHLLADVSCVLGTLDIVFGEVDR 396
>gi|329850726|ref|ZP_08265571.1| NADH-quinone oxidoreductase subunit D [Asticcacaulis biprosthecum
C19]
gi|328841041|gb|EGF90612.1| NADH-quinone oxidoreductase subunit D [Asticcacaulis biprosthecum
C19]
Length = 404
Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats.
Identities = 295/393 (75%), Positives = 343/393 (87%), Gaps = 2/393 (0%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ R FTINFGPQHPAAHGVLRL+L+LDGEIVERVDPHIGLLHRGTEKL+E++T+LQ +P
Sbjct: 14 EDDRKFTINFGPQHPAAHGVLRLVLDLDGEIVERVDPHIGLLHRGTEKLMESRTYLQNIP 73
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYVAPMNQEHA+ LA+EKLLG+++P R Q IRV++SEIGRILSHLLNVTTQAMDV
Sbjct: 74 YFDRLDYVAPMNQEHAFCLAIEKLLGLDVPKRAQYIRVIFSEIGRILSHLLNVTTQAMDV 133
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTPPLWGFEEREKLMVFYERA G+R+HA YFRPGGVHQD+PPEL+EDI WC FP
Sbjct: 134 GALTPPLWGFEEREKLMVFYERACGARLHANYFRPGGVHQDLPPELIEDIIAWCKYFPKP 193
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L DI L+T NRIFKQRNV+IG V E A+ WGF+GV+IRGS AWDLRKSQPYECY+EL
Sbjct: 194 LADIETLVTENRIFKQRNVDIGVVSKEQAFDWGFTGVLIRGSNVAWDLRKSQPYECYAEL 253
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FDI +GK+GDC+DRYL R+ EM++SVKI+ QC+++L G V + D K+ PP+RA+
Sbjct: 254 EFDIVLGKNGDCWDRYLCRIEEMKQSVKIMLQCLDKLKQTP--GEVLSRDHKVTPPRRAE 311
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK SME+LIHHFKLYTEG+ P GEVYAAVEAPKGEFGVYL+SDG NKPYRCKIRAPG+
Sbjct: 312 MKNSMEALIHHFKLYTEGFKTPEGEVYAAVEAPKGEFGVYLVSDGTNKPYRCKIRAPGFP 371
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQAM++L +GH LADVSAILGSLDIVFGE+DR
Sbjct: 372 HLQAMDWLNRGHLLADVSAILGSLDIVFGEIDR 404
>gi|304391402|ref|ZP_07373344.1| NADH dehydrogenase (quinone), d subunit [Ahrensia sp. R2A130]
gi|303295631|gb|EFL89989.1| NADH dehydrogenase (quinone), d subunit [Ahrensia sp. R2A130]
Length = 396
Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats.
Identities = 297/396 (75%), Positives = 346/396 (87%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + R+F INFGPQHPAAHGVLRL+LELDGE+VERVDPHIGLLHRGTEKLIE KT+LQ
Sbjct: 1 MPEVDIRNFNINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEHKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYVAPMNQEHA+ A+EK+L +E+P R QLIRVLYSEIGRILSH+LNVTTQA
Sbjct: 61 ALPYFDRLDYVAPMNQEHAWCRAIEKMLDLEVPRRAQLIRVLYSEIGRILSHILNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+DVGA TP LWGFEEREKLMVFYERA G+R+H+AYFRPGGVHQD+P LVEDI WC+ F
Sbjct: 121 LDVGAFTPSLWGFEEREKLMVFYERACGARLHSAYFRPGGVHQDLPKALVEDIQSWCEQF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P ++DI LLT NRIFKQRNV+IG + LEDAW GFSGVM+RGSGAAWDLR++QPYECY
Sbjct: 181 PKVIDDIEALLTDNRIFKQRNVDIGIISLEDAWARGFSGVMVRGSGAAWDLRRAQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E++FDIP+GK+ D YDRY++RM+EMRES KI+ QC +LL GP+++ D K VPPK
Sbjct: 241 DEMEFDIPVGKNCDNYDRYVIRMLEMRESTKIMAQCCEKLLAPEGQGPIASPDGKAVPPK 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R DMK+SME+LIHHFKLYTEG+HVP GEVY AVEAPKGEFGVYL+SDG NKPYR K+RAP
Sbjct: 301 RGDMKKSMEALIHHFKLYTEGFHVPEGEVYCAVEAPKGEFGVYLVSDGSNKPYRVKLRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G++HLQAM+++CKGH LADV A+LGS+DIVFGEVDR
Sbjct: 361 GFSHLQAMDYMCKGHMLADVGAVLGSMDIVFGEVDR 396
>gi|42520418|ref|NP_966333.1| NADH dehydrogenase subunit D [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|225630184|ref|YP_002726975.1| NADH dehydrogenase I, D subunit [Wolbachia sp. wRi]
gi|81652591|sp|Q73HJ8|NUOD_WOLPM RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|42410157|gb|AAS14267.1| NADH dehydrogenase I, D subunit [Wolbachia endosymbiont of
Drosophila melanogaster]
gi|225592165|gb|ACN95184.1| NADH dehydrogenase I, D subunit [Wolbachia sp. wRi]
Length = 390
Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats.
Identities = 259/390 (66%), Positives = 328/390 (84%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
++ +NFGPQHPAAHGVLRL+LE+DGE++ER DPHIGLLHRGTEKLIE KT+LQA+PYFD
Sbjct: 5 KTMMLNFGPQHPAAHGVLRLVLEMDGEVIERADPHIGLLHRGTEKLIEHKTYLQALPYFD 64
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYV+PM+QEHAY+L VEKLL E+PIR + +RVL+ E+ RIL+HLLNV++QA+DVGA+
Sbjct: 65 RLDYVSPMSQEHAYSLCVEKLLQCEVPIRAKYLRVLFCELTRILNHLLNVSSQALDVGAM 124
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP LW FEEREK++ FYERASG+R HAAY RPGG+ D+P +L+EDI + + FP ++D
Sbjct: 125 TPLLWLFEEREKILEFYERASGARFHAAYIRPGGIAADVPEDLIEDIAKFIEQFPKYIDD 184
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ +LLT NRI+KQR V I + ++ A WGFSG M+R +G AWDLRKSQPYE Y +LDFD
Sbjct: 185 VDELLTENRIWKQRTVGISEISIKQALDWGFSGPMLRAAGLAWDLRKSQPYEIYDQLDFD 244
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
IPIG++GDCYDRYLVRM E+R+S+ +++QC+ ++ G + D KI PP RA+MK+
Sbjct: 245 IPIGQNGDCYDRYLVRMAEIRQSISLVKQCIEKM----PEGQIKTEDRKISPPSRAEMKK 300
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
SME+LIHHFKLY+EGYHVP GE YA VEAPKGEFGVY++SDG N+PYRC+IRAPG+AHLQ
Sbjct: 301 SMEALIHHFKLYSEGYHVPEGEAYAVVEAPKGEFGVYIVSDGTNRPYRCRIRAPGFAHLQ 360
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A++F+ KGH LADV+AI+GSLDIVFGE+DR
Sbjct: 361 ALDFMAKGHMLADVAAIIGSLDIVFGEIDR 390
>gi|328543688|ref|YP_004303797.1| NADH dehydrogenase subunit D [polymorphum gilvum SL003B-26A1]
gi|326413432|gb|ADZ70495.1| NADH dehydrogenase subunit D [Polymorphum gilvum SL003B-26A1]
Length = 394
Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats.
Identities = 317/396 (80%), Positives = 359/396 (90%), Gaps = 2/396 (0%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + + R+F INFGPQHPAAHGVLRL+LELDGE+V RVDPHIGLLHRGTEKLIE KT+LQ
Sbjct: 1 MAEAQVRNFNINFGPQHPAAHGVLRLVLELDGEVVTRVDPHIGLLHRGTEKLIEQKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVPYFDRLDYVAPMNQEHA+ALAVE+LLG+ +P RGQLIRVLYSEIGR+LSHLLNVTTQA
Sbjct: 61 AVPYFDRLDYVAPMNQEHAFALAVERLLGVTVPKRGQLIRVLYSEIGRLLSHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFE RE+LMVFYERA G+RMHAAY RPGGVHQD+P +L++DI +CD F
Sbjct: 121 MDVGALTPPLWGFEPREELMVFYERACGARMHAAYVRPGGVHQDLPRQLLDDIWDFCDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L+DI LLT NRIFKQRNV+IG VKLE+AW WGFSGVM+RGSGA WDLRK+QPYECY
Sbjct: 181 LQTLDDIEGLLTDNRIFKQRNVDIGVVKLEEAWAWGFSGVMVRGSGAPWDLRKAQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+ELDFDIPIGK+GDCYDRYL+RM EMR+SV+I++QC+ +L + GPVS +D KIVPPK
Sbjct: 241 AELDFDIPIGKNGDCYDRYLIRMEEMRQSVRIMKQCLEKL--TVETGPVSTTDGKIVPPK 298
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MKRSME+LIHHFKLYTEGYHVP GEVYAAVEAPKGEFGVYL++DG NKPYRCKI+AP
Sbjct: 299 RGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYLVADGTNKPYRCKIKAP 358
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GY+HLQAM+FLC+GH LADVSAILGSLDIVFGEVDR
Sbjct: 359 GYSHLQAMDFLCRGHMLADVSAILGSLDIVFGEVDR 394
>gi|315499791|ref|YP_004088594.1| NADH dehydrogenase i, d subunit [Asticcacaulis excentricus CB 48]
gi|315417803|gb|ADU14443.1| NADH dehydrogenase I, D subunit [Asticcacaulis excentricus CB 48]
Length = 419
Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats.
Identities = 301/392 (76%), Positives = 341/392 (86%), Gaps = 2/392 (0%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
R FTINFGPQHPAAHGVLRL+L+LDGEIVERVDPHIGLLHRGTEKL+E +T+LQ PY
Sbjct: 30 DDRKFTINFGPQHPAAHGVLRLVLDLDGEIVERVDPHIGLLHRGTEKLMEYRTYLQNTPY 89
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
FDRLDYVAPMNQEHA+ LA+E+LLG+E+P R QLIRVL+SEIGRILSHLLN+TTQAMDVG
Sbjct: 90 FDRLDYVAPMNQEHAFCLAIERLLGLEVPKRAQLIRVLFSEIGRILSHLLNITTQAMDVG 149
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
ALTPPLWGFEEREKLMVFYERA G+R+HA YFRPGGVHQD+ EL++DI WC FP AL
Sbjct: 150 ALTPPLWGFEEREKLMVFYERACGARLHANYFRPGGVHQDLTTELIDDIEQWCKEFPRAL 209
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
DI L+T NRIFKQRNV+IG V ++A+ WGF+GVMIRGSG WDLRKSQPYECY ELD
Sbjct: 210 ADIESLVTENRIFKQRNVDIGVVSKQEAYDWGFTGVMIRGSGIEWDLRKSQPYECYDELD 269
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDI IGK+GDC+DRYL R+ EMR++VKI+ QCV +L G V A+D KI PP+RADM
Sbjct: 270 FDIVIGKNGDCWDRYLCRVEEMRQAVKIMEQCVEKLRVTG--GEVLATDHKITPPRRADM 327
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K SME+LIHHFKLYTEG+ P GEVYAAVEAPKGEFGVYL+SDG NKPYRCKIRAPG+AH
Sbjct: 328 KNSMEALIHHFKLYTEGFKTPPGEVYAAVEAPKGEFGVYLVSDGSNKPYRCKIRAPGFAH 387
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
LQAM+++ +GH LADVSAILGSLDIVFGEVDR
Sbjct: 388 LQAMDWMNRGHLLADVSAILGSLDIVFGEVDR 419
>gi|195064427|ref|XP_001996567.1| GH23924 [Drosophila grimshawi]
gi|193892113|gb|EDV90979.1| GH23924 [Drosophila grimshawi]
Length = 469
Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats.
Identities = 245/394 (62%), Positives = 307/394 (77%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+K R+ T+NFGPQHPAAHGVLRL+LELDGE V R DPHIGLLHRGTEKLIE KT+ QA+
Sbjct: 80 EKSVRNLTLNFGPQHPAAHGVLRLVLELDGETVMRADPHIGLLHRGTEKLIEYKTYTQAL 139
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E Y+LAVEKLL IE+P+R + IR L+ EI RIL+H++ + T A+D
Sbjct: 140 PYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYIRTLFGEITRILNHIMAIGTHALD 199
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTP W FEEREK+M FYER SG+RMHAAY RPGGV D+P L++DI + F
Sbjct: 200 VGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFASKFAE 259
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+++ D+L+ NRI+ QR +IG V E+A +GFSGVM+RGSG WDLRK QPY+ Y
Sbjct: 260 RLDEVEDVLSTNRIWVQRTEDIGIVSAEEALNYGFSGVMLRGSGIKWDLRKQQPYDAYDL 319
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+DFD+PIG GDCYDRYL R+ EMR+S++II QC+N++ G + D K+ PP R+
Sbjct: 320 VDFDVPIGTKGDCYDRYLCRIEEMRQSLRIIDQCLNQMPA----GEIKTDDAKVTPPTRS 375
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SME+LIHHFKL+T+GY VP G Y A+EAPKGEFGVYL+SDG ++PYRCKI+APG+
Sbjct: 376 EMKTSMEALIHHFKLFTQGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGF 435
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL A+E + K H LADV AI+G+LD+VFGE+DR
Sbjct: 436 AHLAALEKIGKQHMLADVVAIIGTLDVVFGEIDR 469
>gi|114051447|ref|NP_001040366.1| NADH dehydrogenase-ubiquinone Fe-S protein 2 precursor [Bombyx
mori]
gi|95102646|gb|ABF51261.1| NADH dehydrogenase-ubiquinone Fe-S protein 2 precursor [Bombyx
mori]
Length = 466
Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats.
Identities = 243/394 (61%), Positives = 307/394 (77%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+KK R+ +NFGPQHPAAHGVLRL+LELDGE V DPHIGLLHRGTEKLIE KT+ QA+
Sbjct: 77 EKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQAL 136
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E Y+LAVEKLL I++P+R + IR L++EI R+L+H++ V T A+D
Sbjct: 137 PYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALD 196
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTP W FEEREK+M FYER SG+RMHAAY RPGGV D+P L++DI + F
Sbjct: 197 VGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAE 256
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++++ D+LT NRI+ QR +IG V +DA +GFSGVM+RGSG WDLRK+QPY+ Y
Sbjct: 257 RIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLRGSGIKWDLRKTQPYDAYPF 316
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++FD+PIG HGDCYDRYL R+ EMR+S++II QC+N + G V D K+ PP R
Sbjct: 317 VEFDVPIGTHGDCYDRYLCRVEEMRQSLRIIEQCLNDM----PPGEVKTDDAKLTPPSRE 372
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SME+LIHHFKL+T+GY VP G Y AVEAPKGEFG+YL+SDGG+KPYRCKI+APG+
Sbjct: 373 EMKTSMEALIHHFKLFTQGYQVPPGSTYTAVEAPKGEFGIYLVSDGGSKPYRCKIKAPGF 432
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL A+E + + LAD+ AI+G+LD+VFGE+DR
Sbjct: 433 AHLAALEKIGRNSMLADIVAIIGTLDVVFGEIDR 466
>gi|319405695|emb|CBI79318.1| NADH dehydrogenase I, D subunit [Bartonella sp. AR 15-3]
Length = 396
Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats.
Identities = 303/396 (76%), Positives = 348/396 (87%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + R+F INFGPQHPAAHGVLR++LELDGE+VERVDPHIGLLHRGTEKL+ETKT+LQ
Sbjct: 1 MPEVNVRNFNINFGPQHPAAHGVLRMVLELDGEVVERVDPHIGLLHRGTEKLMETKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A PY DRLDYVAPMNQEHA+ LA+EKLLGIE+P RGQLIRVL+SEIGRIL+HLLNVTTQA
Sbjct: 61 AGPYLDRLDYVAPMNQEHAFVLAIEKLLGIEVPKRGQLIRVLFSEIGRILNHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFE+REKLM+FYERA G+R+HA YFRPGGVHQD+P L+EDIG + D F
Sbjct: 121 MDVGALTPPLWGFEQREKLMIFYERACGARLHANYFRPGGVHQDLPENLIEDIGNFIDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
AL+ + L+T NRIFKQRNV+IG V + +AW GFSGVMIRG+G AWDLRKSQPYECY
Sbjct: 181 LIALDKLDTLITPNRIFKQRNVDIGVVNINEAWARGFSGVMIRGAGVAWDLRKSQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E++FDIP+GK+ DCYDRYL+RM EMR+S KI+RQCVNRLL K GPVS+ D K+VPPK
Sbjct: 241 DEMEFDIPVGKNSDCYDRYLIRMEEMRQSTKIMRQCVNRLLSSEKNGPVSSLDHKVVPPK 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R++MK SME+LIHHFKLYTEG+H P GEVY AVEAPKGEFGVYL+SDG NKPYR K+RAP
Sbjct: 301 RSEMKNSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKGEFGVYLVSDGTNKPYRVKLRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHLQAM+FL +GH LAD AILGS+DIVFGEVDR
Sbjct: 361 GFAHLQAMDFLTRGHMLADAPAILGSIDIVFGEVDR 396
>gi|90423905|ref|YP_532275.1| NADH dehydrogenase subunit D [Rhodopseudomonas palustris BisB18]
gi|122476332|sp|Q215I0|NUOD_RHOPB RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|90105919|gb|ABD87956.1| NADH dehydrogenase I, D subunit [Rhodopseudomonas palustris BisB18]
Length = 396
Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats.
Identities = 313/396 (79%), Positives = 352/396 (88%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + R+FTINFGPQHPAAHGVLRL+LELDGEIVERVDPHIGLLHRGTEKLIE KT+LQ
Sbjct: 1 MPEGALRNFTINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIEAKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYVAPMNQEHA+ LA EKLL I +P R QLIRVLY EIGRILSHLLNVTTQA
Sbjct: 61 AIPYFDRLDYVAPMNQEHAFCLAAEKLLDIAVPRRAQLIRVLYCEIGRILSHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLM+FYERASGSRMHAAYFR GGVHQD+PP+LV+DI WC +F
Sbjct: 121 MDVGALTPPLWGFEEREKLMMFYERASGSRMHAAYFRVGGVHQDLPPKLVDDIEAWCVAF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P ++D+ LLTGNRIFKQRNV+IG V L AW WGFSGVM+RGSGAAWDLRKSQPYECY
Sbjct: 181 PQVIDDLDRLLTGNRIFKQRNVDIGVVTLAQAWEWGFSGVMVRGSGAAWDLRKSQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+EL+FDIPIGK+GDCYDRY +RM EMR+SV+I++QC+ +L + GPV+ D KI PP+
Sbjct: 241 AELEFDIPIGKNGDCYDRYCIRMEEMRQSVRIMQQCIAKLRAPDGGGPVAVQDNKIFPPR 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MKRSMESLIHHFKLYTEG+ VP GEVY AVEAPKGEFGV+L+SDG NKPY+CKIRAP
Sbjct: 301 RGEMKRSMESLIHHFKLYTEGFRVPAGEVYVAVEAPKGEFGVFLVSDGSNKPYKCKIRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHLQAM+F+ +GH LADVSAILGSLDIVFGEVDR
Sbjct: 361 GFAHLQAMDFISRGHLLADVSAILGSLDIVFGEVDR 396
>gi|288958986|ref|YP_003449327.1| NADH dehydrogenase I chain D [Azospirillum sp. B510]
gi|288911294|dbj|BAI72783.1| NADH dehydrogenase I chain D [Azospirillum sp. B510]
Length = 419
Score = 461 bits (1187), Expect = e-128, Method: Composition-based stats.
Identities = 259/394 (65%), Positives = 315/394 (79%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K + + +T+NFGPQHPAAHGVLRL++EL+GE+VER DPHIGLLHRGTEKLIE KT++QAV
Sbjct: 30 KTQIKPYTMNFGPQHPAAHGVLRLVMELNGEVVERCDPHIGLLHRGTEKLIEYKTYVQAV 89
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+PM EHAY L +E LL I+ P+R Q IRVL+SEI RIL+H+L++TT A+D
Sbjct: 90 PYFDRLDYVSPMCMEHAYVLGIENLLQIKAPLRAQYIRVLFSEITRILNHILSITTGALD 149
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTP LWGFEERE LM FYER SG+R+HA YFRPGGV DIP L++DI + + FP
Sbjct: 150 VGALTPALWGFEEREILMEFYERVSGARLHANYFRPGGVAWDIPDGLLDDIWAFTERFPK 209
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++D+ LLT NRIFKQR V+IG V E A W F+G M+RGSG AWDLRKSQPYE Y
Sbjct: 210 FMDDLESLLTENRIFKQRTVDIGIVTKEQALDWAFTGPMLRGSGVAWDLRKSQPYEVYDR 269
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++FD+P+G GDC+ RYLVRM EM++S++IIRQC + GP D K+ PP R
Sbjct: 270 MEFDVPVGLTGDCWARYLVRMEEMKQSLRIIRQCCKEMPA----GPYKVQDRKVSPPPRG 325
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MKRSME+LIHHFKL+TEG+HVP GE Y A+EAPKGEFGVYL+SDG NKPYRCKIRAPG+
Sbjct: 326 EMKRSMEALIHHFKLFTEGFHVPAGETYTAIEAPKGEFGVYLVSDGTNKPYRCKIRAPGF 385
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ ++F+ KGH LAD A + S+DIVFGE+DR
Sbjct: 386 AHLQGLDFMSKGHMLADAVANIASMDIVFGEIDR 419
>gi|190571038|ref|YP_001975396.1| NADH dehydrogenase I, D subunit [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|213019559|ref|ZP_03335365.1| NADH dehydrogenase I, D subunit [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|218534466|sp|B3CLH1|NUOD_WOLPP RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|190357310|emb|CAQ54739.1| NADH dehydrogenase I, D subunit [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|212994981|gb|EEB55623.1| NADH dehydrogenase I, D subunit [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 390
Score = 461 bits (1187), Expect = e-128, Method: Composition-based stats.
Identities = 260/390 (66%), Positives = 327/390 (83%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
++ +NFGPQHPAAHGVLRL+LE+DGE++ER DPHIGLLHRGTEKLIE KT+LQA+PYFD
Sbjct: 5 KTMMLNFGPQHPAAHGVLRLVLEMDGEVIERADPHIGLLHRGTEKLIEHKTYLQALPYFD 64
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYV+PM+QEHAY+L VEKLL EIPIR + +RVL+ E+ RIL+HLLN+++QA+DVGA+
Sbjct: 65 RLDYVSPMSQEHAYSLCVEKLLQCEIPIRAKYLRVLFCELTRILNHLLNISSQALDVGAM 124
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP LW FEEREK++ FYERASG+R HAAY RPGG+ DIP L+EDI + + FP ++D
Sbjct: 125 TPLLWLFEEREKILEFYERASGARFHAAYIRPGGLAADIPEGLIEDIAKFIEQFPKYIDD 184
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ +LLT NRI+KQR V I + ++ A WGFSG M+R +G AWDLRKSQPYE Y +LDFD
Sbjct: 185 VDELLTENRIWKQRTVGISEISIKQALDWGFSGPMLRAAGLAWDLRKSQPYEIYDQLDFD 244
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
IPIG++GDCYDRYLVRM E+R+SV +++QC+ ++ GP+ D KI PP RA+MK
Sbjct: 245 IPIGQNGDCYDRYLVRMAEIRQSVSLVKQCIEKM----PEGPIKTEDRKISPPPRAEMKE 300
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
SME++IHHFKLY+EGYHVP GE Y AVEAPKGEFGVY++SDG N+PYRC+IRAPG+AHLQ
Sbjct: 301 SMEAMIHHFKLYSEGYHVPEGEAYVAVEAPKGEFGVYIVSDGTNRPYRCRIRAPGFAHLQ 360
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A++F+ KGH LAD++AI+GSLDIVFGE+DR
Sbjct: 361 ALDFMAKGHMLADIAAIIGSLDIVFGEIDR 390
>gi|119481603|ref|XP_001260830.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, putative
[Neosartorya fischeri NRRL 181]
gi|119408984|gb|EAW18933.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, putative
[Neosartorya fischeri NRRL 181]
Length = 470
Score = 461 bits (1187), Expect = e-128, Method: Composition-based stats.
Identities = 243/394 (61%), Positives = 305/394 (77%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+K R +T+NFGPQHPAAHGVLRLILEL+GE + R DPH+GLLHRGTEKLIE KT++QA+
Sbjct: 81 DRKIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRSDPHVGLLHRGTEKLIEYKTYMQAL 140
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E ++LAVEKLL IEIP R + IR L+ EI RIL+HL++V + AMD
Sbjct: 141 PYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKWIRTLFGEITRILNHLMSVLSHAMD 200
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTP LWGFEEREKLM FYER SG+R+HAAY RPGGV QD+P L++DI W F
Sbjct: 201 VGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDLPLGLLDDIYQWATQFGD 260
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+++ +LLT NRI+K R +G V DA F+GVM+RGSG WD+RKSQPY+ Y +
Sbjct: 261 RIDETEELLTDNRIWKARTQGVGVVTAADALNMSFTGVMLRGSGVPWDIRKSQPYDAYDQ 320
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++FD+P+G +GDCYDRYL RM E R+S++II QC+N++ GPV D KI PP RA
Sbjct: 321 VEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNKMPA----GPVRVEDYKISPPPRA 376
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
MK +ME+LIHHF L+T+GY VP GE Y+A+EAPKGE GV+L+SDG +PYRCKIRAPG+
Sbjct: 377 AMKENMEALIHHFLLFTKGYAVPPGETYSAIEAPKGEMGVFLVSDGSERPYRCKIRAPGF 436
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL + + +GH LAD AI+G++D+VFGEVDR
Sbjct: 437 AHLGGFDQISRGHLLADAVAIIGTMDLVFGEVDR 470
>gi|269958790|ref|YP_003328578.1| NADH dehydrogenase subunit D [Anaplasma centrale str. Israel]
gi|269848620|gb|ACZ49264.1| NADH dehydrogenase subunit D [Anaplasma centrale str. Israel]
Length = 395
Score = 461 bits (1187), Expect = e-128, Method: Composition-based stats.
Identities = 256/393 (65%), Positives = 317/393 (80%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ + T+NFGPQHPAAHGV+RL+LE+ GE+VERVDPHIGLLHRGTEKLIE KT+LQA+P
Sbjct: 7 SQIKPMTLNFGPQHPAAHGVMRLVLEMSGEVVERVDPHIGLLHRGTEKLIEYKTYLQALP 66
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+PM+QEHAY+L VEKLL +P R + IRV++ E+ R+L+HLLNV++QA+D
Sbjct: 67 YFDRLDYVSPMSQEHAYSLCVEKLLQCVVPPRAKYIRVIFCELTRVLNHLLNVSSQALDT 126
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP LW FEERE+L+ FYERASG+R HAAY RPGG+ D+P L++DI + +SFP
Sbjct: 127 GATTPLLWMFEERERLLSFYERASGARFHAAYIRPGGIAADVPDGLLDDIHAFTESFPKL 186
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L+D+ LLT N I+KQRNV+IG V A WGFSG M+R G WDLRKSQPYE Y L
Sbjct: 187 LDDVDGLLTENSIWKQRNVDIGVVSKAQALDWGFSGPMLRACGIPWDLRKSQPYEIYETL 246
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DF +P+G +GDCYDRYLVRM EMRES+ IIRQC+N + GPV D KI PP+R +
Sbjct: 247 DFKVPVGSNGDCYDRYLVRMAEMRESISIIRQCLNGI----PEGPVKTDDRKIAPPRREE 302
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+K SME+LIHHFKL++EGY VP GE Y AVEAPKGEFGVY++SDG N+PYRC+IRAPG+A
Sbjct: 303 LKYSMEALIHHFKLFSEGYKVPEGEAYVAVEAPKGEFGVYIVSDGTNRPYRCRIRAPGFA 362
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQA++ + +GH LAD++AI+GSLDIVFGE+DR
Sbjct: 363 HLQAIDAMARGHMLADLTAIIGSLDIVFGEIDR 395
>gi|241256858|ref|XP_002404495.1| NADH:ubiquinone oxidoreductase, NDUFS2/49 kDa subunit, putative
[Ixodes scapularis]
gi|215496653|gb|EEC06293.1| NADH:ubiquinone oxidoreductase, NDUFS2/49 kDa subunit, putative
[Ixodes scapularis]
Length = 462
Score = 461 bits (1186), Expect = e-128, Method: Composition-based stats.
Identities = 248/394 (62%), Positives = 308/394 (78%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+KK R+ INFGPQHPAAHGVLRL+LEL+GE V R DPHIGLLHRGTEKL+E KT+ QA+
Sbjct: 73 EKKVRNMQINFGPQHPAAHGVLRLVLELEGETVVRADPHIGLLHRGTEKLMEYKTYTQAL 132
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DRLDYV+ M E Y+LAVEKLL I+IP R + IRVL+ EI RIL+H++ V T +D
Sbjct: 133 PYMDRLDYVSMMANEQCYSLAVEKLLNIDIPKRAKYIRVLFGEITRILNHIMAVGTHCLD 192
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+G LTP W FEEREKLM FYER SG+RMHAAY RPGGV QD+P L++DI W F
Sbjct: 193 IGGLTPFFWLFEEREKLMEFYERVSGARMHAAYVRPGGVAQDMPLGLLDDIYDWAQKFSQ 252
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+++ DLLTGNRI++QR ++IG + EDA WG SGVM+RGSG WDLRK+QPY+ Y +
Sbjct: 253 RLDEVEDLLTGNRIWRQRTIDIGVISAEDALDWGCSGVMLRGSGIKWDLRKTQPYDSYED 312
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+F++P+G GDCYDRYL RM EMR+S+ II QC+N++ GPV D K VPP R
Sbjct: 313 FEFEVPVGLKGDCYDRYLCRMEEMRQSLLIIHQCLNKM----PPGPVRTDDNKCVPPSRE 368
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SME+LIHHFKL+TEGY VP G Y AVEAPKGEFG+Y+ISDG ++PYRCKI+APG+
Sbjct: 369 EMKTSMEALIHHFKLFTEGYQVPPGATYTAVEAPKGEFGLYMISDGSSRPYRCKIKAPGF 428
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL A++F+ + H LAD+ AI+G+LD+VFGE+DR
Sbjct: 429 AHLSALDFIGRNHMLADIVAIIGTLDVVFGEIDR 462
>gi|188580282|ref|YP_001923727.1| NADH dehydrogenase I, D subunit [Methylobacterium populi BJ001]
gi|218534416|sp|B1ZA43|NUOD_METPB RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|179343780|gb|ACB79192.1| NADH dehydrogenase I, D subunit [Methylobacterium populi BJ001]
Length = 396
Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats.
Identities = 294/396 (74%), Positives = 346/396 (87%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + R+F+INFGPQHPAAHGVLRL+LELDGE+VERVDPHIGLLHRGTEKLIE KT+LQ
Sbjct: 1 MSEHNIRNFSINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEHKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A PYFDRLDYV+PMNQEHA+ LA+E+L GIE+P R QLIR L+ EIGR+LSHLLNVTTQA
Sbjct: 61 ATPYFDRLDYVSPMNQEHAFCLAIERLAGIEVPRRAQLIRTLFCEIGRLLSHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLM+FYERASG+R+HA YFRPGGVHQD+PP L++DI +CD F
Sbjct: 121 MDVGALTPPLWGFEEREKLMIFYERASGARLHANYFRPGGVHQDLPPALIDDIEAFCDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
++D+ +L+ NRIFKQRNV+IG V +++A WGFSGVM+RGSG WDLRKSQPYECY
Sbjct: 181 LKVVDDLDNLVMANRIFKQRNVDIGIVSVDEAMAWGFSGVMVRGSGIPWDLRKSQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E+DFDIP+GK+GD YDR ++RM EMRESVKI+RQC +L + GP+++ D K PP
Sbjct: 241 EEMDFDIPVGKNGDTYDRQVIRMEEMRESVKIMRQCCAKLREPSGQGPIASIDGKFAPPP 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MKRSME+LIHHFKLYTEG+HVP GEVYAAVEAPKGEFGVYL+SDG NKPYRCKIRAP
Sbjct: 301 RREMKRSMEALIHHFKLYTEGFHVPEGEVYAAVEAPKGEFGVYLVSDGTNKPYRCKIRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHLQAM+++C+GH LADVS +LG+LDIVFGEVDR
Sbjct: 361 GFAHLQAMDWMCRGHLLADVSCVLGTLDIVFGEVDR 396
>gi|150396114|ref|YP_001326581.1| NADH dehydrogenase subunit D [Sinorhizobium medicae WSM419]
gi|218534362|sp|A6U7W6|NUOD1_SINMW RecName: Full=NADH-quinone oxidoreductase subunit D 1; AltName:
Full=NADH dehydrogenase I subunit D 1; AltName:
Full=NDH-1 subunit D 1
gi|150027629|gb|ABR59746.1| NADH dehydrogenase I, D subunit [Sinorhizobium medicae WSM419]
Length = 396
Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats.
Identities = 333/396 (84%), Positives = 368/396 (92%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + R+F INFGPQHPAAHGVLRL+LELDGEIVERVDPHIGLLHRGTEKLIE KT+LQ
Sbjct: 1 MTEHNVRNFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIEAKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYVAPMNQEHA+ALAVE+L G ++PIRGQLIRVLYSEIGRILSHLLNVTTQA
Sbjct: 61 AIPYFDRLDYVAPMNQEHAFALAVERLTGTQVPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLMVFYERA G+RMHAAYFRPGGVHQD+P +LVEDIG W D F
Sbjct: 121 MDVGALTPPLWGFEEREKLMVFYERACGARMHAAYFRPGGVHQDLPHQLVEDIGKWIDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
++DI +LLTGNRIFKQRNV+IG V LEDAW WGFSGVM+RGSGAAWDLR+SQPYECY
Sbjct: 181 LKTVDDIDELLTGNRIFKQRNVDIGVVSLEDAWAWGFSGVMVRGSGAAWDLRRSQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
S+L+FDIPIGK+GDC+DRYL+RM+EMRES +I+RQCV+RLLG KVGPVS+ D KIVPPK
Sbjct: 241 SDLEFDIPIGKNGDCFDRYLIRMIEMRESARIMRQCVDRLLGDAKVGPVSSLDGKIVPPK 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MKRSME+LIHHFKLYTEGYHVP G+VYAAVEAPKGEFGVYL+SDG NKPYRCKIRAP
Sbjct: 301 RGEMKRSMEALIHHFKLYTEGYHVPAGDVYAAVEAPKGEFGVYLVSDGTNKPYRCKIRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GYAHLQAM+FLC+GHQLADVSA+LGSLDIVFGEVDR
Sbjct: 361 GYAHLQAMDFLCRGHQLADVSAVLGSLDIVFGEVDR 396
>gi|47209375|emb|CAF91411.1| unnamed protein product [Tetraodon nigroviridis]
Length = 462
Score = 460 bits (1185), Expect = e-127, Method: Composition-based stats.
Identities = 251/394 (63%), Positives = 315/394 (79%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+K+ + TINFGPQHPAAHGVLRL++EL GE V++ DPHIGLLHRGTEKLIE KT+LQA+
Sbjct: 73 EKEVSNLTINFGPQHPAAHGVLRLVMELSGESVKKCDPHIGLLHRGTEKLIEYKTYLQAL 132
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E AY+LAVEKLL ++ P R Q IRVLY E+ RIL+H++ VTT A+D
Sbjct: 133 PYFDRLDYVSMMCNEQAYSLAVEKLLNVQAPPRAQWIRVLYGELTRILNHIMAVTTHALD 192
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA+TP W FEEREK+ FYER SG+RMHAAY RPGGVHQD+P L++DI WC +F
Sbjct: 193 IGAMTPFFWMFEEREKMFEFYERVSGARMHAAYVRPGGVHQDLPLGLMDDIYEWCQNFSI 252
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++++ ++LT NRI+K R V+IG V E+A +GFSGVM+RGSG WDLRKSQPY+ Y E
Sbjct: 253 RIDEVEEMLTNNRIWKNRTVDIGVVTSEEALNYGFSGVMLRGSGIKWDLRKSQPYDKYDE 312
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++FDIPIG +GDCYDRYL R+ EMR+S++I+ Q +N++ G + D K+ PPKR+
Sbjct: 313 VEFDIPIGSNGDCYDRYLCRVEEMRQSLRIMHQALNKM----PEGEIKIDDAKVAPPKRS 368
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SMESLIHHFKLYTEGY VP G Y AVEAPKGEFGVYL+SDG ++PYRCKI+APG+
Sbjct: 369 EMKTSMESLIHHFKLYTEGYQVPPGATYTAVEAPKGEFGVYLVSDGSSRPYRCKIKAPGF 428
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL ++ + +GH LADV AI+G+ DIVFGEVDR
Sbjct: 429 AHLAGLDKMSQGHMLADVVAIIGTQDIVFGEVDR 462
>gi|227821620|ref|YP_002825590.1| NADH dehydrogenase subunit D [Sinorhizobium fredii NGR234]
gi|227340619|gb|ACP24837.1| NADH dehydrogenase I chain D [Sinorhizobium fredii NGR234]
Length = 396
Score = 460 bits (1185), Expect = e-127, Method: Composition-based stats.
Identities = 332/396 (83%), Positives = 367/396 (92%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + R+F INFGPQHPAAHGVLRL+LELDGEIVERVDPHIGLLHRGTEKLIE KT+LQ
Sbjct: 1 MTEHNVRNFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIEAKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVPYFDRLDYVAPMNQEHA+ALAVE+L G E+PIRGQLIRVLYSEIGRILSHLLNVTTQA
Sbjct: 61 AVPYFDRLDYVAPMNQEHAFALAVERLTGTEVPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLMVFYERA G+RMH+AYFRPGGVHQD+P ELVEDIG W + F
Sbjct: 121 MDVGALTPPLWGFEEREKLMVFYERACGARMHSAYFRPGGVHQDLPHELVEDIGNWIEPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
++DI +LLTGNRIFKQRNV+IG VKLEDAW WGFSGVM+RGSGAAWDLR++QPYECY
Sbjct: 181 LKTVDDIDELLTGNRIFKQRNVDIGVVKLEDAWAWGFSGVMVRGSGAAWDLRRAQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
S++ FDIPIGK+GDCYDRYL+RM+EMR+S I+RQCV+RLLG K+GPVS+ D KIVPPK
Sbjct: 241 SDMQFDIPIGKNGDCYDRYLIRMIEMRQSALIMRQCVDRLLGDAKIGPVSSLDGKIVPPK 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MKRSME+LIHHFKLYTEGYHVP GEVYAAVEAPKGEFGV+L+SDG NKPYRCKIRAP
Sbjct: 301 RGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVFLVSDGTNKPYRCKIRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GYAHLQAM+FLC+GHQLADVSA+LGSLDIVFGEVDR
Sbjct: 361 GYAHLQAMDFLCRGHQLADVSAVLGSLDIVFGEVDR 396
>gi|229366982|gb|ACQ58471.1| NADH dehydrogenase iron-sulfur protein 2, mitochondrial precursor
[Anoplopoma fimbria]
Length = 467
Score = 460 bits (1185), Expect = e-127, Method: Composition-based stats.
Identities = 252/394 (63%), Positives = 313/394 (79%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+K + TINFGPQHPAAHGVLRL+LEL GE V++ DPHIGLLHRGTEKLIE KT+LQA+
Sbjct: 78 EKDVSNLTINFGPQHPAAHGVLRLVLELSGESVKKCDPHIGLLHRGTEKLIEYKTYLQAL 137
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E AY+LAVEKLL I+ P R Q IRVLY E+ RIL+H++ +TT A+D
Sbjct: 138 PYFDRLDYVSMMCNEQAYSLAVEKLLNIQAPPRAQWIRVLYGEMTRILNHIMAITTHALD 197
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA+TP W FEEREK+ FYER SG+RMHAAY RPGGVHQD+P L++DI WC +F
Sbjct: 198 IGAMTPFFWLFEEREKMFEFYERVSGARMHAAYVRPGGVHQDLPLGLMDDIYEWCKNFSI 257
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++++ ++LT NRI+K R V+IG V E+A +GFSGVM+RGSG WDLRKSQPY+ Y E
Sbjct: 258 RIDEVEEMLTNNRIWKNRTVDIGVVTSEEALNYGFSGVMLRGSGIKWDLRKSQPYDKYDE 317
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++FD+PIG GDCYDRYL R+ EMR+S++I+ Q +N++ G + D K+ PPKR+
Sbjct: 318 VEFDVPIGIKGDCYDRYLCRVEEMRQSLRIMLQSLNKM----PEGEIKVDDAKVAPPKRS 373
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SMESLIHHFKLYTEGY VP G Y AVEAPKGEFGVYL+SDG ++PYRCKI+APG+
Sbjct: 374 EMKTSMESLIHHFKLYTEGYQVPPGATYTAVEAPKGEFGVYLVSDGSSRPYRCKIKAPGF 433
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL ++ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 434 AHLAGLDKMAKGHMLADVVAIIGTQDIVFGEVDR 467
>gi|239811624|gb|ACS27111.1| NADH dehydrogenase subunit 7 [Heterosigma akashiwo]
gi|239811664|gb|ACS27150.1| NADH dehydrogenase subunit 7 [Heterosigma akashiwo]
gi|294610387|dbj|BAI70606.2| NADH dehydrogenase subunit 7 [Heterosigma akashiwo]
Length = 397
Score = 460 bits (1185), Expect = e-127, Method: Composition-based stats.
Identities = 262/393 (66%), Positives = 322/393 (81%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+K ++FTINFGPQHPAAHGVLRL+LEL+GE+V+R DPHIGLLHRGTEKLIE KT++QA+P
Sbjct: 9 RKIKNFTINFGPQHPAAHGVLRLVLELNGEVVDRADPHIGLLHRGTEKLIEYKTYIQALP 68
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M QEH Y L +EKLLG +IP+R Q IRVL+ EI RIL+HLL V AMDV
Sbjct: 69 YFDRLDYVSMMTQEHTYVLGIEKLLGCDIPVRAQYIRVLFCEITRILNHLLAVGCHAMDV 128
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+TP LW FEEREKLM FYER SG+RMHAAYFRPGGV QD+P +++DI + F +
Sbjct: 129 GAMTPFLWAFEEREKLMEFYERVSGARMHAAYFRPGGVSQDLPLGILDDIYLFSKQFVTR 188
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L+++ ++LT NRI+KQR V+IG V +DA WGFSGVM+RGS WDLRK+QPYE Y ++
Sbjct: 189 LDEMEEMLTSNRIWKQRLVDIGIVSKKDACDWGFSGVMLRGSTIPWDLRKNQPYEVYDKM 248
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+F++P+GK+GDCYDRYL+RM EMRES+KII+QC+N + +GPV D KI P R+D
Sbjct: 249 EFEVPVGKNGDCYDRYLIRMQEMRESLKIIQQCLNNM----PLGPVKLDDHKITSPSRSD 304
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK+SMESLIHHFKLYTEG VP GE Y A EAPKGEFGVYL+S+G N+PYRCKI+APG+
Sbjct: 305 MKQSMESLIHHFKLYTEGMVVPAGETYTATEAPKGEFGVYLVSNGTNRPYRCKIKAPGFG 364
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQA++F+ KGH +ADV I+G+ DIVFGEVDR
Sbjct: 365 HLQALDFMAKGHMVADVVTIIGTQDIVFGEVDR 397
>gi|222148277|ref|YP_002549234.1| NADH dehydrogenase subunit D [Agrobacterium vitis S4]
gi|221735265|gb|ACM36228.1| NADH ubiquinone oxidoreductase chain D [Agrobacterium vitis S4]
Length = 396
Score = 460 bits (1185), Expect = e-127, Method: Composition-based stats.
Identities = 327/396 (82%), Positives = 369/396 (93%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + R+FTINFGP+HP+AHGVLRL+LELDGEIVERVDPHIGLLHRGTEKLIE KT+LQ
Sbjct: 1 MTEHSVRNFTINFGPEHPSAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIEAKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYVAPMNQEHAY LAVEKLLG+EIPIRGQLIRVLYSEIGRILSH++NVTTQA
Sbjct: 61 ALPYFDRLDYVAPMNQEHAYCLAVEKLLGLEIPIRGQLIRVLYSEIGRILSHIMNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGA+TPP+WGFEEREKLMVFYERASG+RMHAAYFRPGG+HQDIP +LVEDIG WCD F
Sbjct: 121 MDVGAMTPPVWGFEEREKLMVFYERASGARMHAAYFRPGGIHQDIPAQLVEDIGAWCDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L+DI LLT NRIFKQRNV+IG V LEDAW WGFSGVM+RGSGAAWDLR+SQPYECY
Sbjct: 181 LKVLDDIEGLLTENRIFKQRNVDIGVVSLEDAWKWGFSGVMVRGSGAAWDLRRSQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
S+++FDIP+GK+GDCYDRYL+RMMEMRESVKI++QCVNRLLG ++GPVS+ D K+VPPK
Sbjct: 241 SDMEFDIPVGKNGDCYDRYLIRMMEMRESVKIMKQCVNRLLGDARIGPVSSVDGKVVPPK 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MKRSME+LIHHFKLYTEG+HVP GEVYAAVEAPKGEFGVYL++DG NKPYRCKIRAP
Sbjct: 301 RGEMKRSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKGEFGVYLVADGTNKPYRCKIRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ HLQAM+F+ +GHQLADV+A+LGSLDIVFGEVDR
Sbjct: 361 GFVHLQAMDFMSRGHQLADVTAVLGSLDIVFGEVDR 396
>gi|224925492|gb|ACN69494.1| NADH-ubiquinone oxidoreductase [Paecilomyces sp. J18]
Length = 474
Score = 460 bits (1184), Expect = e-127, Method: Composition-based stats.
Identities = 243/393 (61%), Positives = 304/393 (77%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+K R +T+NFGPQHPAAHGVLRLILEL+GE + R DPH+GLLHRGTEKLIE KT++QA+P
Sbjct: 86 RKIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYMQALP 145
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M E Y+LAVEKLL IE+P R + IR +++EI RIL+HL++V + AMDV
Sbjct: 146 YFDRLDYVSMMTNEQVYSLAVEKLLNIEVPERAKWIRTMFAEITRILNHLMSVLSHAMDV 205
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP LWGFEEREKLM FYER SG+RMHAAY RPGGV QDIP L++DI W F
Sbjct: 206 GALTPFLWGFEEREKLMEFYERVSGARMHAAYVRPGGVSQDIPLGLLDDIYQWATQFSDR 265
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ +LLT NRI+K R +G V DA F+GVM+RGSG WD+RKSQPY+ Y ++
Sbjct: 266 IDETEELLTDNRIWKARTQGVGVVSAADALNMSFTGVMLRGSGVPWDVRKSQPYDAYDQV 325
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FD+P+G +GDCYDRYL RM E R+S++II QC+N++ GPV D KI PP RA
Sbjct: 326 EFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNKM----PPGPVKVEDYKISPPPRAA 381
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK +ME+LIHHF L+ +GY VP GE Y A+EAPKGE GVY++SDG +PYRCKIRAPG+A
Sbjct: 382 MKENMEALIHHFLLFAKGYSVPPGETYTAIEAPKGEMGVYIVSDGSERPYRCKIRAPGFA 441
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HL + + +GH LAD AI+G++D+VFGEVDR
Sbjct: 442 HLGGFDQVARGHLLADAVAIIGTMDLVFGEVDR 474
>gi|254469443|ref|ZP_05082848.1| NADH dehydrogenase (quinone), D subunit [Pseudovibrio sp. JE062]
gi|211961278|gb|EEA96473.1| NADH dehydrogenase (quinone), D subunit [Pseudovibrio sp. JE062]
Length = 394
Score = 460 bits (1184), Expect = e-127, Method: Composition-based stats.
Identities = 304/396 (76%), Positives = 353/396 (89%), Gaps = 2/396 (0%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + + R+F INFGPQHPAAHGVLRL+LELDGE+V RVDPHIGLLHRGTEKLIE KT+LQ
Sbjct: 1 MAEAQVRNFNINFGPQHPAAHGVLRLVLELDGEVVTRVDPHIGLLHRGTEKLIEHKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVPYFDRLDYVAPMNQEHAYALAVE+LLGIE+P RGQLIRVLYSEIGR+LSHLLNVTTQA
Sbjct: 61 AVPYFDRLDYVAPMNQEHAYALAVERLLGIEVPKRGQLIRVLYSEIGRLLSHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFE RE+LM FYER G+RMHAAY RPGGVHQD+P +L++D+ WCD F
Sbjct: 121 MDVGALTPPLWGFEPREELMGFYERGCGARMHAAYVRPGGVHQDLPQDLLDDMWNWCDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L+DI LLT NRIFKQRNV+IG V L++AW GFSGVM+RGSGA WDLRKSQPYECY
Sbjct: 181 LKTLDDIEGLLTDNRIFKQRNVDIGVVDLDEAWAMGFSGVMVRGSGAKWDLRKSQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E++FDI IGK+GDCYDRYL+RM EMR+SV+I++QC+ L + GPVS++D K+VPPK
Sbjct: 241 DEMEFDIAIGKNGDCYDRYLIRMFEMRQSVRIMKQCLEML--GKETGPVSSTDGKVVPPK 298
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MKRSME+LIHHFKLYTEGY VP GE+YAAVEAPKGEFGVYL+SDG NKPYRCKI+AP
Sbjct: 299 RGEMKRSMEALIHHFKLYTEGYKVPEGEIYAAVEAPKGEFGVYLVSDGTNKPYRCKIKAP 358
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHLQA+++LC+GH LADV+A++GS+DIVFGE+DR
Sbjct: 359 GFAHLQALDYLCRGHMLADVAAVIGSIDIVFGEIDR 394
>gi|170742514|ref|YP_001771169.1| NADH dehydrogenase I, D subunit [Methylobacterium sp. 4-46]
gi|218534419|sp|B0ULK7|NUOD_METS4 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|168196788|gb|ACA18735.1| NADH dehydrogenase I, D subunit [Methylobacterium sp. 4-46]
Length = 396
Score = 460 bits (1184), Expect = e-127, Method: Composition-based stats.
Identities = 292/396 (73%), Positives = 346/396 (87%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + R+F+INFGPQHPAAHGVLRL+LELDGEIVERVDPHIGLLHRGTEKLIE KT+LQ
Sbjct: 1 MTEHSIRNFSINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIEVKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A PYFDRLDYVAPMNQEHA+ LAVEKLLGIE+P R +LIR L+ EIGR+LSHLLNVTTQA
Sbjct: 61 ATPYFDRLDYVAPMNQEHAFCLAVEKLLGIEVPRRAKLIRTLFCEIGRLLSHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLM+FYERASG+R+HA YFRPGGVHQD+PP L++DI +CD F
Sbjct: 121 MDVGALTPPLWGFEEREKLMIFYERASGARLHANYFRPGGVHQDLPPGLIDDIEAFCDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
++D+ L+ GNRIFKQRNV+IG V ++ A WGFSGVM+RGSG WDLR++QPYE Y
Sbjct: 181 LQVVDDLDALVIGNRIFKQRNVDIGIVTVDAAMAWGFSGVMLRGSGIPWDLRRAQPYEAY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E++FD+P+GK+GD YDR ++RM EMR+SV+I++QC+ +L + GPV+ D K+ PP
Sbjct: 241 EEMEFDVPVGKNGDTYDRQVIRMEEMRQSVRIMKQCLAKLRAPDGQGPVTTQDGKVAPPS 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MKRSME+LIHHFKLYTEG+HVP GEVYAAVEAPKGEFGVYL++DG NKPYRCKIRAP
Sbjct: 301 RREMKRSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKGEFGVYLVADGTNKPYRCKIRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHLQAM+++C+GH LADVS ILG+LDIVFGEVDR
Sbjct: 361 GFAHLQAMDWMCRGHMLADVSCILGTLDIVFGEVDR 396
>gi|212530120|ref|XP_002145217.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, putative
[Penicillium marneffei ATCC 18224]
gi|210074615|gb|EEA28702.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, putative
[Penicillium marneffei ATCC 18224]
Length = 474
Score = 460 bits (1184), Expect = e-127, Method: Composition-based stats.
Identities = 240/393 (61%), Positives = 305/393 (77%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+K R +T+NFGPQHPAAHGVLRLILEL+GE + R DPH+GLLHRGTEKLIE KT++QA+P
Sbjct: 86 RKIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYMQALP 145
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M E ++LAVEKLL I+IP R + IR L+ EI R+L+HL++V + AMDV
Sbjct: 146 YFDRLDYVSMMTNEQCFSLAVEKLLNIDIPERAKWIRTLFGEITRVLNHLMSVLSHAMDV 205
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP LWGFEEREKLM FYER SG+R+HAAY RPGGV QD+P L++DI W F
Sbjct: 206 GALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDLPLGLLDDIYQWATQFGDR 265
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ +LLT NRI+K R +G V DA F+GVM+RGSG WD+RKSQPY+ Y ++
Sbjct: 266 IDETEELLTDNRIWKARTQGVGVVSAADALNMSFTGVMLRGSGVPWDVRKSQPYDAYDQV 325
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FD+P+G +GDCYDRYL RM E R+S++II QC+N++ GPV D KI PP RA
Sbjct: 326 EFDVPVGMNGDCYDRYLCRMEEFRQSLRIIHQCLNKMPA----GPVKVEDYKISPPPRAA 381
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK +ME+LIHHF L+T+GY VP GE Y+A+EAPKGE GV+++SDG +PYRCKIRAPG+A
Sbjct: 382 MKENMEALIHHFLLFTKGYTVPPGETYSAIEAPKGEMGVFVVSDGSERPYRCKIRAPGFA 441
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HL + + +GH LAD AI+G++D+VFGEVDR
Sbjct: 442 HLGGFDQVARGHLLADAVAIIGTMDLVFGEVDR 474
>gi|242819539|ref|XP_002487339.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, putative
[Talaromyces stipitatus ATCC 10500]
gi|218713804|gb|EED13228.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, putative
[Talaromyces stipitatus ATCC 10500]
Length = 474
Score = 460 bits (1184), Expect = e-127, Method: Composition-based stats.
Identities = 241/393 (61%), Positives = 305/393 (77%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+K R +T+NFGPQHPAAHGVLRLILEL+GE + R DPH+GLLHRGTEKLIE KT++QA+P
Sbjct: 86 RKIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYMQALP 145
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M E Y+LAVEKLL IEIP R + IR ++ EI RIL+HL++V + AMDV
Sbjct: 146 YFDRLDYVSMMTNEQCYSLAVEKLLNIEIPERAKWIRTMFGEITRILNHLMSVLSHAMDV 205
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP LWGFEEREKLM FYER SG+R+HAAY RPGGV QD+P L++DI W F
Sbjct: 206 GALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDLPLGLLDDIYQWATQFGDR 265
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ +LLT NRI+K R +G V DA F+GVM+RGSG WD+RKSQPY+ Y ++
Sbjct: 266 IDETEELLTDNRIWKARTQGVGVVSAADALNMSFTGVMLRGSGVPWDVRKSQPYDAYDQV 325
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FD+P+G +GDCYDRYL RM E R+S++II QC+N++ GPV D KI PP RA
Sbjct: 326 EFDVPVGMNGDCYDRYLCRMEEFRQSLRIIHQCLNKMPA----GPVKVEDYKISPPPRAA 381
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK +ME+LIHHF L+T+GY VP GE Y+A+EAPKGE GV+++SDG +PYRCKIR+PG+A
Sbjct: 382 MKENMEALIHHFLLFTKGYTVPPGETYSAIEAPKGEMGVFIVSDGSERPYRCKIRSPGFA 441
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HL + + +GH LAD AI+G++D+VFGEVDR
Sbjct: 442 HLGGFDQVSRGHLLADAVAIIGTMDLVFGEVDR 474
>gi|22550346|ref|NP_689365.1| NADH dehydrogenase subunit 7 [Chaetosphaeridium globosum]
gi|22417012|gb|AAM96611.1|AF494279_16 NADH dehydrogenase subunit 7 [Chaetosphaeridium globosum]
Length = 393
Score = 460 bits (1184), Expect = e-127, Method: Composition-based stats.
Identities = 260/394 (65%), Positives = 317/394 (80%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K+ ++FT+NFGPQHPAAHGVLRL+LE++GE+VER +PHIGLLHRGTEKLIE KT+LQA+
Sbjct: 4 TKQIKNFTLNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQAL 63
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M QEHAY+LAVEKLL E+P+R Q IRV++ EI RIL+HLL +TT AMD
Sbjct: 64 PYFDRLDYVSMMAQEHAYSLAVEKLLNCEVPLRAQYIRVMFCEITRILNHLLALTTHAMD 123
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTP LW FEERE+LM FYER SG+RMHAAY RPGGV QD+P L EDI + F S
Sbjct: 124 VGALTPFLWAFEERERLMEFYERVSGARMHAAYIRPGGVAQDLPLGLSEDIYKFTQQFAS 183
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++++ ++LT NRI+KQR V+IG V +DA WGFSGVM+RGSG WDLRK+ PY+ Y +
Sbjct: 184 RIDELEEMLTNNRIWKQRLVDIGVVTAQDALDWGFSGVMLRGSGINWDLRKAAPYDVYQQ 243
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LDFD+P+G GDCYDRY +R+ EMR+S++II QC+N + G V D KI PP R+
Sbjct: 244 LDFDVPVGTRGDCYDRYCIRVEEMRQSLRIIAQCLNAM----PTGMVKVDDRKITPPSRS 299
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
MK+SMESLIHHFKLYTEG VP G Y AVEAPKGEFGV+L+S+G N+PYRCKIRAPG+
Sbjct: 300 QMKQSMESLIHHFKLYTEGVSVPEGSTYTAVEAPKGEFGVFLVSNGTNRPYRCKIRAPGF 359
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQA++F+ K H LADV I+G+ DIVFGEVDR
Sbjct: 360 VHLQALDFMSKHHMLADVVTIIGTQDIVFGEVDR 393
>gi|182676964|ref|YP_001831111.1| NADH dehydrogenase I, D subunit [Beijerinckia indica subsp. indica
ATCC 9039]
gi|218534365|sp|B2ILG7|NUOD2_BEII9 RecName: Full=NADH-quinone oxidoreductase subunit D 2; AltName:
Full=NADH dehydrogenase I subunit D 2; AltName:
Full=NDH-1 subunit D 2
gi|182636594|gb|ACB97367.1| NADH dehydrogenase I, D subunit [Beijerinckia indica subsp. indica
ATCC 9039]
Length = 396
Score = 460 bits (1184), Expect = e-127, Method: Composition-based stats.
Identities = 291/396 (73%), Positives = 347/396 (87%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
MD+ R+FT+NFGPQHPAAHGVLRL+LELDGE+VER DPHIGLLHRGTEKLIE +T+LQ
Sbjct: 1 MDEAGFRNFTVNFGPQHPAAHGVLRLVLELDGEVVERADPHIGLLHRGTEKLIEYRTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYVAPMNQEHA+ LA+EKLL + +P RGQLIRVL+ EIGR+LSHLLN+TTQA
Sbjct: 61 ALPYFDRLDYVAPMNQEHAFCLAIEKLLQMPVPRRGQLIRVLFCEIGRLLSHLLNITTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+D+GALTPPLWGFEEREKLMVFYERASG+RMHA YFR GGVHQD+P +L++DI +C+ F
Sbjct: 121 LDIGALTPPLWGFEEREKLMVFYERASGARMHANYFRVGGVHQDLPEKLLDDIWNFCEPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
ND+ +LL+ NRIFKQRNV++G + L++AW GFSGVM+RGSGAAWDLRK+QPYECY
Sbjct: 181 LKVCNDLEELLSYNRIFKQRNVDVGVISLDEAWTRGFSGVMVRGSGAAWDLRKAQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
EL FDIP+GKHGDCYDRYL+RM EMR+SV+I++QC+ +L + GP+ + K+ PP+
Sbjct: 241 DELQFDIPVGKHGDCYDRYLIRMEEMRQSVRIMKQCLEKLSSVDGKGPIIEQNHKVTPPR 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R++MKRSME+LI HFKLYTEG+HVP GEVYAAVEAPKGEFGVYLISDG N PYRCKIRAP
Sbjct: 301 RSEMKRSMEALIQHFKLYTEGHHVPAGEVYAAVEAPKGEFGVYLISDGSNIPYRCKIRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AHLQA++FL H LADVSAI+GSLDIVFGE+DR
Sbjct: 361 SFAHLQAIDFLSHKHMLADVSAIIGSLDIVFGEIDR 396
>gi|145232479|ref|XP_001399684.1| NADH-ubiquinone oxidoreductase subunit [Aspergillus niger CBS
513.88]
gi|134056601|emb|CAK47676.1| unnamed protein product [Aspergillus niger]
Length = 476
Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats.
Identities = 242/393 (61%), Positives = 306/393 (77%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+K R +T+NFGPQHPAAHGVLRLILEL+GE + R DPH+GLLHRGTEKLIE K+++QA+P
Sbjct: 88 RKIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKSYMQALP 147
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M E ++LAVEKLL IEIP R + IR L+ E+ RIL+HL++V + AMDV
Sbjct: 148 YFDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKYIRTLFGEMTRILNHLMSVLSHAMDV 207
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP LWGFEEREKLM FYER SG+R+HAAY RPGGV QD+P L++DI W F
Sbjct: 208 GALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDLPLGLLDDIYQWATQFGDR 267
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ +LLT NRI+K R +G VK DA F+GVM+RGSG WD+RKSQPY+ Y ++
Sbjct: 268 IDETEELLTDNRIWKARTQGVGVVKAADALNMSFTGVMLRGSGVPWDIRKSQPYDAYDQV 327
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FD+P+G +GDCYDRYL RM E R+S++II QC+N++ GPV D KI PP RA
Sbjct: 328 EFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNQMPA----GPVRVEDYKISPPPRAA 383
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK +ME+LIHHF L+T+GY VP GE Y+A+EAPKGE GV+L+SDG +PYRCKIRAPG+A
Sbjct: 384 MKENMEALIHHFLLFTKGYAVPPGETYSAIEAPKGEMGVFLVSDGSERPYRCKIRAPGFA 443
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HL + + +GH LAD AI+G++D+VFGEVDR
Sbjct: 444 HLGGFDQVSRGHLLADAVAIIGTMDLVFGEVDR 476
>gi|119189171|ref|XP_001245192.1| hypothetical protein CIMG_04633 [Coccidioides immitis RS]
gi|303323291|ref|XP_003071637.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor, putative [Coccidioides posadasii C735 delta
SOWgp]
gi|240111339|gb|EER29492.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor, putative [Coccidioides posadasii C735 delta
SOWgp]
gi|320035277|gb|EFW17219.1| NADH dehydrogenase subunit D [Coccidioides posadasii str. Silveira]
Length = 471
Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats.
Identities = 249/393 (63%), Positives = 308/393 (78%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+K R +T+NFGPQHPAAHGVLRLILEL+GE + R DPH+GLLHRGTEKLIE KT+LQA+P
Sbjct: 83 RKIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYLQALP 142
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M E Y+LAVEKLL IEIP R + IR L+ EI RIL+HL++V + AMDV
Sbjct: 143 YFDRLDYVSMMTNEQCYSLAVEKLLNIEIPERAKWIRTLFGEITRILNHLMSVLSHAMDV 202
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP LWGFEEREKLM FYER SG+R+HAAY RPGGVHQDIP L++DI W F
Sbjct: 203 GALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPLGLLDDIYQWATQFGDR 262
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ +LLT NRI+K R IG V DA +GF+GVM+RGSG WD+RKSQPY+ Y ++
Sbjct: 263 IDETEELLTDNRIWKARTQGIGVVSAADALNFGFTGVMLRGSGVPWDIRKSQPYDAYDQV 322
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FD+P+G +GDCYDRYL RM E R+S++II QC+N++ GPV D KI PP RA
Sbjct: 323 EFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNKMPA----GPVRVEDYKINPPPRAA 378
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK +ME+LIHHF L+T+GY VP GE Y+A+EAPKGE GVY++SDG +PYRCKIRAPG+A
Sbjct: 379 MKENMEALIHHFLLFTKGYAVPPGETYSAIEAPKGEMGVYIVSDGSERPYRCKIRAPGFA 438
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HL + + +GH LAD AI+G++D+VFGEVDR
Sbjct: 439 HLGCFDQISRGHLLADAVAIIGTMDLVFGEVDR 471
>gi|121716356|ref|XP_001275783.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, putative
[Aspergillus clavatus NRRL 1]
gi|119403940|gb|EAW14357.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, putative
[Aspergillus clavatus NRRL 1]
Length = 474
Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats.
Identities = 241/394 (61%), Positives = 304/394 (77%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+K R +T+NFGPQHPAAHGVLRLILEL+GE + R DPH+GLLHRGTEKLIE KT++QA+
Sbjct: 85 DRKIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRSDPHVGLLHRGTEKLIEYKTYMQAL 144
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E ++LAVEKLL I+IP R + IR L+ EI RIL+HL++V + AMD
Sbjct: 145 PYFDRLDYVSMMTNEQCFSLAVEKLLNIDIPERAKWIRTLFGEITRILNHLMSVLSHAMD 204
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTP LWGFEEREKLM FYER SG+R+HAAY RPGGV QD+P L++DI W F
Sbjct: 205 VGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDLPLGLLDDIYQWATQFGD 264
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+++ +LLT NRI+K R +G V DA F+GVM+RGSG WD+RKSQPY+ Y +
Sbjct: 265 RIDETEELLTDNRIWKARTQGVGVVSAADALNMSFTGVMLRGSGVPWDIRKSQPYDAYDQ 324
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++FD+P+G +GDCYDRYL RM E R+S++II QC+N++ GPV D KI PP R
Sbjct: 325 VEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNKIPA----GPVRVEDYKISPPPRV 380
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
MK +ME+LIHHF L+T+GY VP GE Y+A+EAPKGE GV+L+SDG +PYRCKIRAPG+
Sbjct: 381 AMKENMEALIHHFLLFTKGYSVPPGETYSAIEAPKGEMGVFLVSDGSERPYRCKIRAPGF 440
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL + + +GH LAD AI+G++D+VFGEVDR
Sbjct: 441 AHLGGFDQISRGHLLADAVAIIGTMDLVFGEVDR 474
>gi|83592893|ref|YP_426645.1| NADH dehydrogenase subunit D [Rhodospirillum rubrum ATCC 11170]
gi|123526695|sp|Q2RU37|NUOD_RHORT RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|83575807|gb|ABC22358.1| NADH dehydrogenase I, D subunit [Rhodospirillum rubrum ATCC 11170]
Length = 392
Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats.
Identities = 254/396 (64%), Positives = 321/396 (81%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + + +S+T+NFGPQHPAAHGVLRL+LEL GE++ER DPHIGLLHRGTEKLIE KT+LQ
Sbjct: 1 MAQTEIKSYTLNFGPQHPAAHGVLRLVLELSGEVIERADPHIGLLHRGTEKLIEYKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDY PMNQEHAY LAVEKLLGI +P R Q +R L++E+ R+++H++N T+ A
Sbjct: 61 ALPYFDRLDYACPMNQEHAYVLAVEKLLGITVPPRAQYLRTLFNEVTRLINHIMNTTSMA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+D+GA+TP L+GFEERE L+ F ERASG+RMHAA+FRPGGV +D+PP+L+EDI +CDSF
Sbjct: 121 LDIGAMTPLLYGFEEREHLLEFSERASGARMHAAWFRPGGVARDVPPDLLEDILKFCDSF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P L+D+ LL NRIFKQR V+IG V + A WGF+G ++RG G WDLRKSQPY+ Y
Sbjct: 181 PKYLDDVEHLLDENRIFKQRTVDIGKVTAQQALDWGFTGPVLRGCGVPWDLRKSQPYDAY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+ +DFDIP G +GDCYDRYLVRM E R+S++I+RQC+ ++ GPV A D K+ PP
Sbjct: 241 AAMDFDIPTGANGDCYDRYLVRMAEQRQSIRIMRQCIEKMPD----GPVKAVDHKVTPPS 296
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MK SME+LIHHFKL+TEG+ VP GE Y AVEA GEFGVYL+SDG N+PYRCKIR+P
Sbjct: 297 RGEMKSSMEALIHHFKLFTEGFKVPEGETYTAVEAATGEFGVYLVSDGTNRPYRCKIRSP 356
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GY HLQ ++ + +GH LADV A +GS+D+VFGE+DR
Sbjct: 357 GYVHLQGLDLMSRGHMLADVVANIGSIDVVFGEIDR 392
>gi|99036040|ref|ZP_01315077.1| hypothetical protein Wendoof_01000071 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
Length = 384
Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats.
Identities = 259/388 (66%), Positives = 326/388 (84%), Gaps = 4/388 (1%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
+NFGPQHPAAHGVLRL+LE+DGE++ER DPHIGLLHRGTEKLIE KT+LQA+PYFDRL
Sbjct: 1 MMLNFGPQHPAAHGVLRLVLEMDGEVIERADPHIGLLHRGTEKLIEHKTYLQALPYFDRL 60
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
DYV+PM+QEHAY+L VEKLL E+PIR + +RVL+ E+ RIL+HLLNV++QA+DVGA+TP
Sbjct: 61 DYVSPMSQEHAYSLCVEKLLQCEVPIRAKYLRVLFCELTRILNHLLNVSSQALDVGAMTP 120
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
LW FEEREK++ FYERASG+R HAAY RPGG+ D+P +L+EDI + + FP ++D+
Sbjct: 121 LLWLFEEREKILEFYERASGARFHAAYIRPGGIAADVPEDLIEDIAKFIEQFPKYIDDVD 180
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
+LLT NRI+KQR V I + ++ A WGFSG M+R +G AWDLRKSQPYE Y +LDFDIP
Sbjct: 181 ELLTENRIWKQRTVGISEISIKQALDWGFSGPMLRAAGLAWDLRKSQPYEIYDQLDFDIP 240
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
IG++GDCYDRYLVRM E+R+S+ +++QC+ ++ G + D KI PP RA+MK+SM
Sbjct: 241 IGQNGDCYDRYLVRMAEIRQSISLVKQCIEKM----PEGQIKTEDRKISPPSRAEMKKSM 296
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
E+LIHHFKLY+EGYHVP GE YA VEAPKGEFGVY++SDG N+PYRC+IRAPG+AHLQA+
Sbjct: 297 EALIHHFKLYSEGYHVPEGEAYAVVEAPKGEFGVYIVSDGTNRPYRCRIRAPGFAHLQAL 356
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVDR 396
+F+ KGH LADV+AI+GSLDIVFGE+DR
Sbjct: 357 DFMAKGHMLADVAAIIGSLDIVFGEIDR 384
>gi|92116744|ref|YP_576473.1| NADH dehydrogenase subunit D [Nitrobacter hamburgensis X14]
gi|122418316|sp|Q1QP34|NUOD1_NITHX RecName: Full=NADH-quinone oxidoreductase subunit D 1; AltName:
Full=NADH dehydrogenase I subunit D 1; AltName:
Full=NDH-1 subunit D 1
gi|91799638|gb|ABE62013.1| NADH dehydrogenase subunit D [Nitrobacter hamburgensis X14]
Length = 396
Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats.
Identities = 309/396 (78%), Positives = 346/396 (87%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + R+FTINFGPQHPAAHGVLRL+LELDGE+V RVDPHIGLLHRGTEKLIE KT+LQ
Sbjct: 1 MVEAAPRNFTINFGPQHPAAHGVLRLVLELDGEVVRRVDPHIGLLHRGTEKLIEHKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYVAPMNQEHA+ LA EKLL I IP RGQLIRVLY EIGR+LSHLLNVTTQA
Sbjct: 61 ALPYFDRLDYVAPMNQEHAFCLATEKLLNITIPKRGQLIRVLYCEIGRLLSHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLMVFYERASG+RMHA YFR GGVHQD+P +L++DI +CD F
Sbjct: 121 MDVGALTPPLWGFEEREKLMVFYERASGARMHANYFRVGGVHQDLPSKLLDDIWDFCDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+D+ LLT NRIFKQRNV I VKL DAWGWGFSGVM+RGSGAAWDLRK+QPYECY
Sbjct: 181 LKVCDDLEGLLTENRIFKQRNVGIAEVKLADAWGWGFSGVMVRGSGAAWDLRKAQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
SELDFDIPIGKHGDCYDRYLVRM EMR+SV+I++QC+ +L GPV+ D KIVPP
Sbjct: 241 SELDFDIPIGKHGDCYDRYLVRMEEMRQSVRIMKQCLEKLRLPEGQGPVATRDHKIVPPS 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
RA+MKRSME++I HFKLYTEG+ VP GEVY AVEAPKGEFGVYL+SDG N+PY+CKIRAP
Sbjct: 301 RAEMKRSMEAMIEHFKLYTEGHRVPAGEVYVAVEAPKGEFGVYLVSDGTNQPYKCKIRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AHL AM+FL +GH LADVSAI+GSLDIVFGE+DR
Sbjct: 361 SFAHLSAMDFLTRGHMLADVSAIIGSLDIVFGEIDR 396
>gi|118590035|ref|ZP_01547439.1| NADH dehydrogenase subunit D [Stappia aggregata IAM 12614]
gi|118437532|gb|EAV44169.1| NADH dehydrogenase subunit D [Stappia aggregata IAM 12614]
Length = 394
Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats.
Identities = 316/396 (79%), Positives = 358/396 (90%), Gaps = 2/396 (0%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + + R+F INFGPQHPAAHGVLRL+LELDGE+V RVDPHIGLLHRGTEKLIE KT+LQ
Sbjct: 1 MAEAQVRNFNINFGPQHPAAHGVLRLVLELDGEVVTRVDPHIGLLHRGTEKLIEQKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVPYFDRLDYVAPMNQEHA+ALA+E++LG+E+P RGQLIRVLYSEIGR+LSHLLNVTTQA
Sbjct: 61 AVPYFDRLDYVAPMNQEHAFALAIERMLGVEVPKRGQLIRVLYSEIGRLLSHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFE RE+LMVFYERA G+RMHAAY RPGGVHQD+ EL++DI +CD F
Sbjct: 121 MDVGALTPPLWGFEPREELMVFYERACGARMHAAYVRPGGVHQDLSRELLDDIWDFCDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L+DI LLT NRIFKQRNV+IG V L+DAW WGFSGVM+RGSGA WDLRKSQPYECY
Sbjct: 181 LQTLDDIEGLLTDNRIFKQRNVDIGVVDLDDAWAWGFSGVMVRGSGAPWDLRKSQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
SELDFDIPIGK+GDCYDRYL+RM EMR+SV+I++QC+ +L + GPVS+ D KIVPPK
Sbjct: 241 SELDFDIPIGKNGDCYDRYLIRMEEMRQSVRIMKQCLEKL--TVETGPVSSIDGKIVPPK 298
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MKRSME+LIHHFKLYTEGYHVP GEVYAAVEAPKGEFGVYL++DG NKPYRCKI+AP
Sbjct: 299 RGEMKRSMEALIHHFKLYTEGYHVPEGEVYAAVEAPKGEFGVYLVADGTNKPYRCKIKAP 358
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GY+HLQAM+FLC+GH LADVSA+LGSLDIVFGEVDR
Sbjct: 359 GYSHLQAMDFLCRGHMLADVSAVLGSLDIVFGEVDR 394
>gi|209154116|gb|ACI33290.1| NADH dehydrogenase iron-sulfur protein 2, mitochondrial precursor
[Salmo salar]
Length = 466
Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats.
Identities = 250/394 (63%), Positives = 315/394 (79%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+K+ + TINFGPQHPAAHGVLRL+LEL GE V++ DPH+GLLHRGTEKLIE KT+LQA+
Sbjct: 77 EKEVSNLTINFGPQHPAAHGVLRLVLELSGESVKKCDPHVGLLHRGTEKLIEYKTYLQAL 136
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E AY+LAVEKLL I+ P R Q IRVL+ E+ RIL+H++ +TT A+D
Sbjct: 137 PYFDRLDYVSMMCNEQAYSLAVEKLLNIQAPPRAQWIRVLFGELTRILNHIMAITTHALD 196
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA+TP W FE+REK+ FYER SG+RMHAAY RPGGVHQD+P L++DI WC +F
Sbjct: 197 IGAMTPFFWMFEQREKMFEFYERVSGARMHAAYVRPGGVHQDMPLGLMDDIYEWCKNFSI 256
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++++ ++LT NRI+K R V+IG V EDA +GFSGVM+RGSG WDLRKSQPY+ Y E
Sbjct: 257 RIDEVEEMLTNNRIWKNRTVDIGVVSAEDALNYGFSGVMLRGSGIKWDLRKSQPYDKYDE 316
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++FD+PIG GDCYDRYL R+ EMR+S++I+ + +N++ G + D K+ PPKR+
Sbjct: 317 VEFDVPIGSKGDCYDRYLCRVEEMRQSLRIMIEALNKMPA----GEIKVDDAKVAPPKRS 372
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SMESLIHHFKLYTEGY VP G Y AVEAPKGEFGVYL+SDG ++PYRCKI+APG+
Sbjct: 373 EMKMSMESLIHHFKLYTEGYQVPPGSTYTAVEAPKGEFGVYLVSDGSSRPYRCKIKAPGF 432
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL A++ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 433 AHLAALDMMAKGHMLADVVAIIGTQDIVFGEVDR 466
>gi|327195242|ref|YP_004339024.1| NADH dehydrogenase subunit 7 [Coccomyxa sp. C-169]
gi|325070738|gb|ADY75466.1| NADH dehydrogenase subunit 7 [Coccomyxa sp. C-169]
Length = 398
Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats.
Identities = 258/396 (65%), Positives = 322/396 (81%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ +K ++FTINFGPQHPAAHGVLRL+LE++GE+V+R DPHIGLLHRGTEKLIE KT+LQ
Sbjct: 7 ITPQKIKNFTINFGPQHPAAHGVLRLVLEMNGEVVKRADPHIGLLHRGTEKLIEYKTYLQ 66
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+ M QEH Y+LAVE+LLG E+P+R Q IRVL++EI RIL+HLL +T A
Sbjct: 67 ALPYFDRLDYVSMMCQEHGYSLAVERLLGCEVPLRAQYIRVLFAEITRILNHLLALTCHA 126
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTP LWGFEEREKLM FYER SG+RMHAAY RPGGV QD+P L EDI + F
Sbjct: 127 MDVGALTPFLWGFEEREKLMEFYERVSGARMHAAYIRPGGVAQDLPIGLSEDIYRFARQF 186
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
S ++++ ++LT NRI+KQR V++G V + A WGFSGVM+RGSG WDLRK+QPY+ Y
Sbjct: 187 ASRIDEMEEMLTNNRIWKQRLVDVGVVTADQALDWGFSGVMLRGSGIGWDLRKTQPYDVY 246
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
S++DF +P+G GDCYDRYL+R+ EMR+S+++I QC+ + G + + D KI PP
Sbjct: 247 SKMDFQVPVGSRGDCYDRYLIRVEEMRQSLRMIMQCLQEM----PQGLIKSDDRKITPPS 302
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R+ MK+SMESLIHHFKLYTEG+ VP GE Y AVEAPKGEFGV+L+S+G N+PYRCKIRAP
Sbjct: 303 RSQMKQSMESLIHHFKLYTEGFAVPAGETYTAVEAPKGEFGVFLVSNGTNRPYRCKIRAP 362
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHLQ ++F+ + H LADV I+G+ DIVFGEVDR
Sbjct: 363 GFAHLQGLDFMARNHMLADVVTIIGTQDIVFGEVDR 398
>gi|319408582|emb|CBI82237.1| NADH dehydrogenase I, D subunit [Bartonella schoenbuchensis R1]
Length = 396
Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats.
Identities = 301/396 (76%), Positives = 345/396 (87%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + R+F INFGPQHPAAHGVLR++LELDGE+VERVDPHIGLLHRGTEKL+ETKT+LQ
Sbjct: 1 MAEVNVRNFNINFGPQHPAAHGVLRMVLELDGEVVERVDPHIGLLHRGTEKLMETKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A PY DRLDYVAPMNQEHA+ LAVEKLLGIE+P RGQLIRVL+SEIGRIL+HLLNVTTQA
Sbjct: 61 ACPYLDRLDYVAPMNQEHAFVLAVEKLLGIEVPKRGQLIRVLFSEIGRILNHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFE+RE+LM+FYERA G+R+HA YFRPGGVH+D+P L+EDIG + D F
Sbjct: 121 MDVGALTPPLWGFEQRERLMIFYERACGARLHANYFRPGGVHRDLPESLIEDIGNFIDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
AL + L+T NRIFKQRNV+IG V ++AW GFSGVMIRG+G WDLRKSQPYECY
Sbjct: 181 LVALGKLDALITPNRIFKQRNVDIGVVSSDEAWARGFSGVMIRGAGVPWDLRKSQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E++FDIP+GK+ DCYDRYL+RM EMR+S KI+RQCVNRLL + GPVS D KIVPPK
Sbjct: 241 DEMEFDIPVGKNSDCYDRYLIRMEEMRQSAKIMRQCVNRLLSTERNGPVSNLDHKIVPPK 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MK SME+LIHHFKLYTEG+H P GEVY AVEAPKGEFGVYL+SDG NKPYR K+RAP
Sbjct: 301 RNEMKNSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKGEFGVYLVSDGTNKPYRVKLRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHLQAM+FL +GH LAD +AILGS+DIVFGEVDR
Sbjct: 361 GFAHLQAMDFLTRGHMLADATAILGSIDIVFGEVDR 396
>gi|254500691|ref|ZP_05112842.1| NADH dehydrogenase (quinone), D subunit [Labrenzia alexandrii
DFL-11]
gi|222436762|gb|EEE43441.1| NADH dehydrogenase (quinone), D subunit [Labrenzia alexandrii
DFL-11]
Length = 394
Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats.
Identities = 316/396 (79%), Positives = 360/396 (90%), Gaps = 2/396 (0%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + + R+F INFGPQHPAAHGVLRL+LELDGE+V RVDPHIGLLHRGTEKLIE KT+LQ
Sbjct: 1 MAEAQVRNFNINFGPQHPAAHGVLRLVLELDGEVVTRVDPHIGLLHRGTEKLIEQKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYVAPMNQEHA+ALAVE++LGIE+P RGQL+RVLYSEIGRILSHLLNVTTQA
Sbjct: 61 AIPYFDRLDYVAPMNQEHAFALAVERMLGIEVPKRGQLVRVLYSEIGRILSHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFE RE+LMVFYERA G+RMHAAY RPGGVHQD+P +L++DI +CD F
Sbjct: 121 MDVGALTPPLWGFEPREELMVFYERACGARMHAAYVRPGGVHQDLPRDLLDDIWDFCDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L+DI LLT NRIFKQRNV+IG V L+DAW WGFSGVM+RGSGA WDLRKSQPYECY
Sbjct: 181 LQTLDDIEGLLTDNRIFKQRNVDIGVVDLDDAWAWGFSGVMVRGSGAPWDLRKSQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
SELDFDIPIGK+GDCYDRYL+RM EMR+S++I++QC+ +L + GPVS++D KIVPPK
Sbjct: 241 SELDFDIPIGKNGDCYDRYLIRMDEMRQSIRIMKQCLEKL--TVETGPVSSADGKIVPPK 298
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MKRSMESLIHHFKLYTEGYHVP GEVYAAVEAPKGEFGVYL++DG NKPYRCKI+AP
Sbjct: 299 RGEMKRSMESLIHHFKLYTEGYHVPPGEVYAAVEAPKGEFGVYLVADGTNKPYRCKIKAP 358
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GYAHL AM+F+C+GHQLADVSA+LGS+DIVFGEVDR
Sbjct: 359 GYAHLSAMDFVCRGHQLADVSAVLGSMDIVFGEVDR 394
>gi|15888601|ref|NP_354282.1| NADH dehydrogenase subunit D [Agrobacterium tumefaciens str. C58]
gi|218534381|sp|A9CJA9|NUOD_AGRT5 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|15156321|gb|AAK87067.1| NADH ubiquinone oxidoreductase chain D [Agrobacterium tumefaciens
str. C58]
Length = 396
Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats.
Identities = 326/396 (82%), Positives = 373/396 (94%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + R+FTINFGP+HP+AHGVLRL+LELDGEIVERVDPHIGLLHRGTEKLIETKT+LQ
Sbjct: 1 MTEHNVRNFTINFGPEHPSAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIETKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVPYFDRLDYVAPMNQEHA+ALAVEKLLG+EIP+RGQLIRVLYSEIGRILSH++NVTTQA
Sbjct: 61 AVPYFDRLDYVAPMNQEHAFALAVEKLLGLEIPMRGQLIRVLYSEIGRILSHIMNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGA+TPP+WGFEEREKLMVFYERA G+RMH+AY RPGGVHQD+PPELV+DIG WCD F
Sbjct: 121 MDVGAMTPPVWGFEEREKLMVFYERACGARMHSAYVRPGGVHQDLPPELVDDIGKWCDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ L++I LLT NRI+KQRNV+IG V LEDA+ WGF+GVM+RGSGAAWDLR+SQPYECY
Sbjct: 181 LTVLDNIEGLLTDNRIYKQRNVDIGVVSLEDAFAWGFTGVMVRGSGAAWDLRRSQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
S+L+FDIP+GK+GDCYDRYL+RM EMRESVKI++QCV+RL GK+++GPVS+ D K+VPPK
Sbjct: 241 SDLEFDIPVGKNGDCYDRYLIRMQEMRESVKIMKQCVDRLSGKHRIGPVSSLDGKVVPPK 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MKRSME+LIHHFKLYTEGYHVP GEVYAAVEAPKGEFGVY+++DG NKPYRCKIRAP
Sbjct: 301 RGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYVVADGSNKPYRCKIRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GYAHLQAM+FLCKGHQLADV+A+LGSLDIVFGEVDR
Sbjct: 361 GYAHLQAMDFLCKGHQLADVTAVLGSLDIVFGEVDR 396
>gi|254560050|ref|YP_003067145.1| NADH-quinone oxidoreductase subunit D [Methylobacterium extorquens
DM4]
gi|254267328|emb|CAX23160.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
[Methylobacterium extorquens DM4]
Length = 396
Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats.
Identities = 294/396 (74%), Positives = 345/396 (87%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + R+F+INFGPQHPAAHGVLRL+LELDGE+VERVDPHIGLLHRGTEKLIE KT+LQ
Sbjct: 1 MTEHNIRNFSINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEHKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A PYFDRLDYVAPMNQEHA+ LA+E+L GIE+P R QLIR L+ EIGR+LSHLLNVTTQA
Sbjct: 61 ATPYFDRLDYVAPMNQEHAFCLAIERLAGIEVPRRAQLIRTLFCEIGRLLSHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLM+FYERASG+R+HA YFRPGGVHQD+PP L++DI +CD F
Sbjct: 121 MDVGALTPPLWGFEEREKLMIFYERASGARLHANYFRPGGVHQDLPPALIDDIEAFCDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
++D+ +L+ NRIFKQRNV+IG V +++A WGFSGVM+RGSG WDLRKSQPYE Y
Sbjct: 181 LKVVDDLDNLVMANRIFKQRNVDIGIVSVDEAMAWGFSGVMVRGSGIPWDLRKSQPYELY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E++FDIP+GK+GD YDR ++RM EMRESVKI+RQCV +L GP+++ D K PP
Sbjct: 241 EEMEFDIPVGKNGDTYDRQVIRMEEMRESVKIMRQCVAKLREPAGQGPIASIDRKFAPPP 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MKRSME+LIHHFKLYTEG+HVP GEVYAAVEAPKGEFGVYL+SDG NKPYRCKIRAP
Sbjct: 301 RREMKRSMEALIHHFKLYTEGFHVPEGEVYAAVEAPKGEFGVYLVSDGTNKPYRCKIRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHLQAM+++C+GH LADVS +LG+LDIVFGEVDR
Sbjct: 361 GFAHLQAMDWMCRGHLLADVSCVLGTLDIVFGEVDR 396
>gi|312215427|emb|CBX95379.1| similar to NADH-ubiquinone oxidoreductase 49 kDa subunit
[Leptosphaeria maculans]
Length = 476
Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats.
Identities = 243/396 (61%), Positives = 309/396 (78%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+D +K R +T+NFGPQHPAAHGVLRLILEL+GE + R DPH+GLLHRGTEKLIE +T+LQ
Sbjct: 85 IDSRKIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYRTYLQ 144
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+ M E ++LAVEKLL IEIPIR + IR +++EI RIL+HL++V + A
Sbjct: 145 ALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPIRAKYIRTMFAEITRILNHLMSVLSHA 204
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTP LWGFEEREKLM FYER SG+R+HAAY RPGGV QD+P L++DI W F
Sbjct: 205 MDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDLPLGLLDDIYQWATQF 264
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+++ ++LT NRI+ R IG V DA + F+GVM+RGSG WD+RKSQPY+ Y
Sbjct: 265 GDRIDETEEMLTDNRIWLGRTKGIGVVSAADAINYSFTGVMLRGSGVPWDVRKSQPYDAY 324
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+++FD+P+G +GDCYDRYL RM E R+S++II QC+N++ GPV D KI PP
Sbjct: 325 DQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNQMPA----GPVKVEDYKIAPPP 380
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
RA MK +ME+LIHHF LY++GY+VP GE Y +EAPKGE GV+L+SDG +PYRCKIRAP
Sbjct: 381 RAAMKENMEALIHHFLLYSKGYNVPPGETYTCIEAPKGEMGVFLVSDGSERPYRCKIRAP 440
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHL M+ + +GH +AD AI+G+LD+VFGEVDR
Sbjct: 441 GFAHLSCMDQISRGHLIADAVAIIGTLDLVFGEVDR 476
>gi|91208870|ref|YP_539031.1| NADH dehydrogenase subunit 7 [Physcomitrella patens]
gi|11559309|dbj|BAB18862.1| NADH dehydrogenase [Physcomitrella patens]
gi|90991410|dbj|BAE93102.1| NADH dehydrogenase subunit 7 [Physcomitrella patens]
Length = 393
Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats.
Identities = 258/394 (65%), Positives = 318/394 (80%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K+ ++FT+NFGPQHPAAHGVLRL+LE++GE+VER +PHIGLLHRGTEKLIE KT+LQA+
Sbjct: 4 TKQIKNFTLNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQAL 63
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M QEHAY+LAVEKL E+P+R Q IRVL+ EI RIL+HLL +TT AMD
Sbjct: 64 PYFDRLDYVSMMAQEHAYSLAVEKLCNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMD 123
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTP LW FEEREKL+ FYER SG+RMHA+Y RPGGV QD+P L EDI + F S
Sbjct: 124 VGALTPFLWAFEEREKLLEFYERVSGARMHASYIRPGGVAQDMPLGLSEDIFLFTQQFAS 183
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+++I ++LT NRI+KQR V+IGTV + A WGFSGVM+RGSG WDLRKS PY+ Y++
Sbjct: 184 RIDEIEEMLTNNRIWKQRLVDIGTVTAQQALDWGFSGVMLRGSGVCWDLRKSAPYDVYNQ 243
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
L FD+P+G GDCYDRY +R+ EMR+S++II QC+N++ G + A D K+ PP R+
Sbjct: 244 LSFDVPVGTRGDCYDRYCIRIEEMRQSIRIIMQCLNQM----PSGMIKADDRKLCPPSRS 299
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
MK+SMESLIHHFKLYTEG+ VP Y AVEAPKGEFGV+L+S+G N+PYRCKIRAPG+
Sbjct: 300 QMKQSMESLIHHFKLYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGTNRPYRCKIRAPGF 359
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ ++F+ K H LADV I+G+ DIVFGEVDR
Sbjct: 360 AHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 393
>gi|229315929|ref|YP_002860155.1| NADH dehydrogenase subunit 7 [Micromonas sp. RCC299]
gi|226431214|gb|ACO55619.1| NADH dehydrogenase subunit 7 [Micromonas sp. RCC299]
Length = 398
Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats.
Identities = 260/393 (66%), Positives = 316/393 (80%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
KK ++FT+NFGPQHPAAHGVLRL+LE++GE+VER DPHIGLLHRGTEKLIE K ++QA+P
Sbjct: 10 KKVKNFTLNFGPQHPAAHGVLRLVLEMNGEVVERADPHIGLLHRGTEKLIEYKNYMQALP 69
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M QEHAY+LAVEKLL E+P+R Q IRVL+ EI RIL+HLL ++ AMDV
Sbjct: 70 YFDRLDYVSMMAQEHAYSLAVEKLLNCEVPLRAQYIRVLFCEITRILNHLLALSCHAMDV 129
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP LW FEEREKLM FYER SG+RMHAAY RPGGV QD+P +D+ +C F S
Sbjct: 130 GALTPFLWAFEEREKLMEFYERVSGARMHAAYIRPGGVSQDLPLGFCDDVHVFCQHFASR 189
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
++++ ++LT NRI+KQR V+IG V ++A WGFSGVM+RGSG AWDLRK+QPY+ Y+EL
Sbjct: 190 IDEMEEMLTNNRIWKQRLVDIGVVTADEAMQWGFSGVMLRGSGVAWDLRKTQPYDVYNEL 249
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
FDIP+G GDCYDRYL+R+ EMR+S+++I +C+N L G + D KI PP R
Sbjct: 250 AFDIPVGSRGDCYDRYLIRIEEMRQSLRLIMECINML----PEGTIKTDDRKITPPSRTH 305
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK SMESLIHHFKLYTEG+ VP E Y AVEAPKGEFGVYL+S+G NKPYRCKIRAPG+
Sbjct: 306 MKESMESLIHHFKLYTEGFVVPASETYTAVEAPKGEFGVYLVSNGSNKPYRCKIRAPGFV 365
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ ++F+ K H LADV I+G+ DIVFGEVDR
Sbjct: 366 HLQGLDFMAKNHMLADVVTIIGTQDIVFGEVDR 398
>gi|254456097|ref|ZP_05069526.1| NADH dehydrogenase (quinone), D subunit [Candidatus Pelagibacter
sp. HTCC7211]
gi|207083099|gb|EDZ60525.1| NADH dehydrogenase (quinone), D subunit [Candidatus Pelagibacter
sp. HTCC7211]
Length = 391
Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats.
Identities = 284/394 (72%), Positives = 336/394 (85%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
KK ++ +NFGPQHPAAHGVLRLILELDGE+VE+ DPHIGLLHRGTEKLIE KT++QAV
Sbjct: 2 TKKIKNLNLNFGPQHPAAHGVLRLILELDGEVVEKADPHIGLLHRGTEKLIENKTYMQAV 61
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYVAPMNQEHA+ALAVEK+L I++PIR Q IRV++ EIGRILSH+LNVTTQA+D
Sbjct: 62 PYFDRLDYVAPMNQEHAFALAVEKILEIDVPIRAQYIRVIFCEIGRILSHILNVTTQALD 121
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTP LWGFEERE LM FYERASGSR+HA YFR GGVHQD+P L DIG +C +FP
Sbjct: 122 VGALTPSLWGFEERETLMTFYERASGSRLHANYFRAGGVHQDLPHGLENDIGKFCQTFPK 181
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++D+ LLT NRIFKQRNV+IG V EDA + FSGVMIRGSG WDLRKSQPY+CY +
Sbjct: 182 IIDDLESLLTDNRIFKQRNVDIGIVTKEDALDYSFSGVMIRGSGVPWDLRKSQPYDCYDQ 241
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LDF IP+GK+GDCYDRYL R+ EM+ESV II+QC++++ + GP+ + D KI PP +
Sbjct: 242 LDFKIPVGKNGDCYDRYLCRIEEMKESVSIIKQCLSKM----EKGPIKSLDGKISPPAKK 297
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
D+K+SME+LIHHFKL+TEGY VP E+Y AVEAPKGEFGVYLISDG +KPY+CKIRAPG+
Sbjct: 298 DIKQSMEALIHHFKLFTEGYRVPKDEIYTAVEAPKGEFGVYLISDGSSKPYKCKIRAPGF 357
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+HLQ+M++L KGH LADV A+LGSLDIVFGEVDR
Sbjct: 358 SHLQSMDYLIKGHMLADVPAVLGSLDIVFGEVDR 391
>gi|56416798|ref|YP_153872.1| NADH dehydrogenase subunit D [Anaplasma marginale str. St. Maries]
gi|254995000|ref|ZP_05277190.1| NADH dehydrogenase subunit D [Anaplasma marginale str. Mississippi]
gi|81359082|sp|Q5PAR3|NUOD_ANAMM RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|56388030|gb|AAV86617.1| NADH dehydrogenase chain D [Anaplasma marginale str. St. Maries]
Length = 398
Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats.
Identities = 255/393 (64%), Positives = 317/393 (80%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ + T+NFGPQHPAAHGV+RLILE+ GE++ER+DPHIGLLHRGTEKLIE KT+LQA+P
Sbjct: 10 SRIKPMTLNFGPQHPAAHGVMRLILEMSGEVIERIDPHIGLLHRGTEKLIEYKTYLQALP 69
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+PM+QEHAY+L VEKLL +P R + IRV++ E+ R+L+HLLNV++QA+D
Sbjct: 70 YFDRLDYVSPMSQEHAYSLCVEKLLQCVVPPRAKYIRVIFCELTRVLNHLLNVSSQALDT 129
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP LW FEERE+L+ FYERASG+R HAAY RPGG+ D+P L++DI + +SFP
Sbjct: 130 GATTPLLWMFEERERLLSFYERASGARFHAAYIRPGGIAADVPDGLLDDIHAFTESFPKL 189
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L+D+ LLT N I+KQRNV+IG V A WGFSG M+R G WDLRKSQPYE Y L
Sbjct: 190 LDDVDGLLTENSIWKQRNVDIGVVSKAQALDWGFSGPMLRACGIPWDLRKSQPYEIYETL 249
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DF +P+G +GDCYDRYLVRM EMRES+ IIRQC+N + GPV D KI PP+R +
Sbjct: 250 DFKVPVGSNGDCYDRYLVRMAEMRESISIIRQCLNGI----PEGPVKTDDRKIAPPRREE 305
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+K SME+LIHHFKL++EGY VP GE Y AVEAPKGEFGVY++SDG N+PYRC+IRAPG+A
Sbjct: 306 LKYSMEALIHHFKLFSEGYKVPEGEAYVAVEAPKGEFGVYIVSDGTNRPYRCRIRAPGFA 365
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQA++ + +GH LAD++AI+GSLDIVFGE+DR
Sbjct: 366 HLQAIDAMARGHMLADLTAIIGSLDIVFGEIDR 398
>gi|323138148|ref|ZP_08073221.1| NADH dehydrogenase I, D subunit [Methylocystis sp. ATCC 49242]
gi|322396610|gb|EFX99138.1| NADH dehydrogenase I, D subunit [Methylocystis sp. ATCC 49242]
Length = 401
Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats.
Identities = 297/390 (76%), Positives = 346/390 (88%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
R+F INFGPQHPAAHGVLRLILELDGE+VERVDPH+G LHRGTEKL+E++T+LQ VPYFD
Sbjct: 12 RNFNINFGPQHPAAHGVLRLILELDGEVVERVDPHVGFLHRGTEKLMESRTYLQNVPYFD 71
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDY APMNQEHA+ LA+E+LL +E+P RGQLIRVLY+EIGR+LSHLLNVT+QAMDVGAL
Sbjct: 72 RLDYCAPMNQEHAFCLAIERLLDVEVPRRGQLIRVLYAEIGRLLSHLLNVTSQAMDVGAL 131
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TPPLWG+EEREKLMVFYERA G+RMHA YFRPGGV +D+P +LVEDIG +CD F ++D
Sbjct: 132 TPPLWGYEEREKLMVFYERACGARMHANYFRPGGVARDLPDQLVEDIGAFCDPFLKVVDD 191
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ +L GNRIFKQRNV+IG + LEDAW WGFSGVM+RGSGAAWDLRK+QPYECY E++FD
Sbjct: 192 LDELFIGNRIFKQRNVDIGVISLEDAWKWGFSGVMVRGSGAAWDLRKAQPYECYEEMEFD 251
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
IP+GKHGDCYDR ++RM EMR+S I++QCV +L+ + GPV + KI P R +MKR
Sbjct: 252 IPVGKHGDCYDRAVIRMEEMRQSTYIMKQCVEKLMRADGRGPVLTPNHKITQPSRQEMKR 311
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
SME+LIHHFKL+TEG+HVP GEVYAAVEAPKGEFGVYL+SDGG+KPYRCKIRAPG+ HL
Sbjct: 312 SMEALIHHFKLFTEGFHVPAGEVYAAVEAPKGEFGVYLVSDGGDKPYRCKIRAPGFVHLS 371
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AM+FLCKGH LADVSAILGSLDIVFGEVDR
Sbjct: 372 AMDFLCKGHMLADVSAILGSLDIVFGEVDR 401
>gi|163850514|ref|YP_001638557.1| NADH dehydrogenase I, D subunit [Methylobacterium extorquens PA1]
gi|240137579|ref|YP_002962050.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
[Methylobacterium extorquens AM1]
gi|218534414|sp|A9W1N0|NUOD_METEP RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|163662119|gb|ABY29486.1| NADH dehydrogenase I, D subunit [Methylobacterium extorquens PA1]
gi|240007547|gb|ACS38773.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
[Methylobacterium extorquens AM1]
Length = 396
Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats.
Identities = 294/396 (74%), Positives = 345/396 (87%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + R+F+INFGPQHPAAHGVLRL+LELDGE+VERVDPHIGLLHRGTEKLIE KT+LQ
Sbjct: 1 MTEHNIRNFSINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEHKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A PYFDRLDYVAPMNQEHA+ LA+E+L GIE+P R QLIR L+ EIGR+LSHLLNVTTQA
Sbjct: 61 ATPYFDRLDYVAPMNQEHAFCLAIERLAGIEVPRRAQLIRTLFCEIGRLLSHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLM+FYERASG+R+HA YFRPGGVHQD+PP L++DI +CD F
Sbjct: 121 MDVGALTPPLWGFEEREKLMIFYERASGARLHANYFRPGGVHQDLPPALIDDIEAFCDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
++D+ +L+ NRIFKQRNV+IG V +++A WGFSGVM+RGSG WDLRKSQPYE Y
Sbjct: 181 LKVVDDLDNLVMANRIFKQRNVDIGIVSVDEAMAWGFSGVMVRGSGIPWDLRKSQPYELY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E++FDIP+GK+GD YDR ++RM EMRESVKI+RQCV +L GP+++ D K PP
Sbjct: 241 EEMEFDIPVGKNGDTYDRQVIRMEEMRESVKIMRQCVAKLREPAGQGPIASIDGKFAPPP 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MKRSME+LIHHFKLYTEG+HVP GEVYAAVEAPKGEFGVYL+SDG NKPYRCKIRAP
Sbjct: 301 RREMKRSMEALIHHFKLYTEGFHVPEGEVYAAVEAPKGEFGVYLVSDGTNKPYRCKIRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHLQAM+++C+GH LADVS +LG+LDIVFGEVDR
Sbjct: 361 GFAHLQAMDWMCRGHLLADVSCVLGTLDIVFGEVDR 396
>gi|262277298|ref|ZP_06055091.1| NADH dehydrogenase (quinone), d subunit [alpha proteobacterium
HIMB114]
gi|262224401|gb|EEY74860.1| NADH dehydrogenase (quinone), d subunit [alpha proteobacterium
HIMB114]
Length = 391
Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats.
Identities = 283/393 (72%), Positives = 331/393 (84%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K+ ++ +NFGPQHPAAHGVLRLILELDGE+VER DPHIGLLHRGTEKLIE KT+ QAVP
Sbjct: 3 KEFKTVNLNFGPQHPAAHGVLRLILELDGEVVERADPHIGLLHRGTEKLIEHKTYTQAVP 62
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYVAPMNQEHA+ALAVEKLL I++PIR + IRV + EIGRILSH+LN+TTQA+DV
Sbjct: 63 YFDRLDYVAPMNQEHAFALAVEKLLNIDVPIRAKNIRVAFCEIGRILSHILNITTQALDV 122
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP LWGFEEREKLMVFYER SGSR+HA YFRPGGVH D+P L +DI +C SFP
Sbjct: 123 GALTPSLWGFEEREKLMVFYERVSGSRLHANYFRPGGVHIDLPTGLDKDILEFCKSFPKV 182
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
++D+ +LLT NRIFKQRNV+IG V +++A GFSGVMIRGSG WDLRKSQPY+ Y
Sbjct: 183 IDDLENLLTDNRIFKQRNVDIGIVSVQEALDHGFSGVMIRGSGIPWDLRKSQPYDGYENY 242
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+F +P+GK+GDCYDRYL R+ EMRESVKII Q ++ L GP+ D ++ PPKR+D
Sbjct: 243 EFKVPVGKNGDCYDRYLCRIEEMRESVKIITQALSNLPD----GPIMTLDTRVGPPKRSD 298
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK SME+LI+HFKLYTEGY VP GE YAAVEAPKGEFGVYL++DG NKPYRCKI+APG+
Sbjct: 299 MKTSMEALINHFKLYTEGYSVPKGETYAAVEAPKGEFGVYLVADGTNKPYRCKIKAPGFT 358
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQAM++L KGH LADV A+LGS+DIVFGEVDR
Sbjct: 359 HLQAMDYLIKGHMLADVPALLGSMDIVFGEVDR 391
>gi|49474180|ref|YP_032222.1| NADH dehydrogenase subunit D [Bartonella quintana str. Toulouse]
gi|81696043|sp|Q6FZY8|NUOD_BARQU RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|49239684|emb|CAF26059.1| NADH dehydrogenase I, D subunit [Bartonella quintana str. Toulouse]
Length = 396
Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats.
Identities = 298/396 (75%), Positives = 351/396 (88%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + R+F INFGPQHPAAHGVLR++LELDGE+VERVDPHIGLLHRGTEKL+ETKT+LQ
Sbjct: 1 MAEVNVRNFNINFGPQHPAAHGVLRMVLELDGEVVERVDPHIGLLHRGTEKLMETKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVPY DRLDYVAPMNQEHA+ LA+EKLLG+E+P RGQLIRVL+SEIGRIL+HLLNVTTQA
Sbjct: 61 AVPYLDRLDYVAPMNQEHAFVLAIEKLLGVEVPKRGQLIRVLFSEIGRILNHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFE+RE+LM+FYERA G+R+HA YFRPGGVHQD+P L+EDIG + D F
Sbjct: 121 MDVGALTPPLWGFEQRERLMIFYERACGARLHANYFRPGGVHQDLPESLIEDIGHFIDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+L+ + L+T NRIFKQRNV+IG + +++AW GFSGVMIRG+G WDLRKSQPYECY
Sbjct: 181 LISLSRLDALVTPNRIFKQRNVDIGVISIDEAWVRGFSGVMIRGAGVPWDLRKSQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E++FDIP+GK+ DCYDRYL+RM EMR+S +I+RQCV+RLLG K GPVS+ + K+VPPK
Sbjct: 241 DEMEFDIPVGKNSDCYDRYLIRMEEMRQSARIMRQCVDRLLGSEKNGPVSSLNRKVVPPK 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R++MK SME+LIHHFKLYTEG+H P GEVY AVEAPKGEFGVYLISDG NKPYR K+RAP
Sbjct: 301 RSEMKSSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKGEFGVYLISDGTNKPYRVKLRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHLQAM+FL +GH LAD +AILGS+DIVFGEVDR
Sbjct: 361 GFAHLQAMDFLTRGHMLADATAILGSIDIVFGEVDR 396
>gi|315044491|ref|XP_003171621.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma gypseum CBS
118893]
gi|311343964|gb|EFR03167.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma gypseum CBS
118893]
Length = 473
Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats.
Identities = 246/393 (62%), Positives = 307/393 (78%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+K R +T+NFGPQHPAAHGVLRLILEL+GE + R DPH+GLLHRGTEKLIE KT++QA+P
Sbjct: 85 RKIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYMQALP 144
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M E ++LAVEKLL IEIP R + IR L+ EI RIL+HL++V + AMDV
Sbjct: 145 YFDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKWIRTLFGEITRILNHLMSVLSHAMDV 204
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP LWGFEEREKLM FYER SG+R+HAAY RPGGVHQDIP L++DI W F
Sbjct: 205 GALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPVGLLDDIYQWATQFSDR 264
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ +LLT NRI+K R V +G V +A +GFSGVM+RGSG WD+RKSQPY+ Y ++
Sbjct: 265 IDETEELLTDNRIWKARTVGVGVVTAAEALNYGFSGVMLRGSGVPWDIRKSQPYDAYGQV 324
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FD+P+G +GDCYDRYL RM E R+S++II QC+N++ GPV D KI PP R
Sbjct: 325 EFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNKIPA----GPVRVEDYKISPPPRIA 380
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK +ME+LIHHF L+T+GY VP GE Y+A+EAPKGE V+L+SDG +PYRCKIRAPG+A
Sbjct: 381 MKENMEALIHHFLLFTKGYTVPPGETYSAIEAPKGEMAVFLVSDGSERPYRCKIRAPGFA 440
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HL + L +GH LAD AI+G++D+VFGEVDR
Sbjct: 441 HLGCFDQLSRGHLLADAVAIIGTMDLVFGEVDR 473
>gi|332373630|gb|AEE61956.1| unknown [Dendroctonus ponderosae]
Length = 461
Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats.
Identities = 248/394 (62%), Positives = 312/394 (79%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+K+ ++ TINFGPQHPAAHGVLRL+LELDGEIV R DPHIGLLHRGTEKLIE KT+ QA+
Sbjct: 72 EKEVKNVTINFGPQHPAAHGVLRLVLELDGEIVRRSDPHIGLLHRGTEKLIEYKTYTQAL 131
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E ++LAVEKLL I++PIR + IRVL++E+ RIL+H++ + T A+D
Sbjct: 132 PYFDRLDYVSMMCNEQCFSLAVEKLLNIDVPIRAKYIRVLFAELTRILNHIMGICTHALD 191
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GALTP W FEEREK+M FYER SG+RMHAAY RPGGV D+P L++DI + F
Sbjct: 192 IGALTPFFWLFEEREKMMEFYERVSGARMHAAYVRPGGVALDMPLGLMDDIFEFASKFNE 251
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+++ DLLT NR++ QR +IG V EDA +GFSGVM+RGSG WDLRK+QPY+ Y +
Sbjct: 252 RLDEVEDLLTSNRLWVQRTEDIGIVTAEDALNYGFSGVMLRGSGIKWDLRKTQPYDAYDK 311
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++FDIPIG GDCYDRYL R+ EMR+S++II QC+N++ G + D K+ PP R
Sbjct: 312 VEFDIPIGTKGDCYDRYLCRLEEMRQSLRIIHQCLNQM----PPGEIKTDDAKVSPPSRG 367
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SME+LIHHFKL+T+GY VP G Y AVEAPKGEFGVYL+SDG +KPYRCKI+APG+
Sbjct: 368 EMKTSMEALIHHFKLFTQGYQVPPGSTYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGF 427
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL A++ + K H LAD+ AI+G+LDIVFGEVDR
Sbjct: 428 AHLAALDKVGKNHMLADIVAIIGTLDIVFGEVDR 461
>gi|327297238|ref|XP_003233313.1| NADH-ubiquinone oxidoreductase subunit [Trichophyton rubrum CBS
118892]
gi|326464619|gb|EGD90072.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Trichophyton rubrum
CBS 118892]
Length = 473
Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats.
Identities = 245/393 (62%), Positives = 307/393 (78%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+K R +T+NFGPQHPAAHGVLRLILEL+GE + R DPH+GLLHRGTEKLIE KT++QA+P
Sbjct: 85 RKIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYMQALP 144
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M E ++LAVEKLL IEIP R + IR ++ EI RIL+HL++V + AMDV
Sbjct: 145 YFDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKWIRTMFGEITRILNHLMSVLSHAMDV 204
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP LWGFEEREKLM FYER SG+R+HAAY RPGGVHQDIP L++DI W F
Sbjct: 205 GALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPLGLLDDIYQWATQFADR 264
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ +LLT NRI+K R V +G V +A +GFSGVM+RGSG WD+RKSQPY+ Y ++
Sbjct: 265 IDETEELLTDNRIWKARTVGVGVVTAAEALNYGFSGVMLRGSGVPWDIRKSQPYDAYGQV 324
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FD+P+G +GDCYDRYL RM E R+S++II QC+N++ GPV D KI PP R
Sbjct: 325 EFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNKMPA----GPVRVEDYKISPPPRIA 380
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK +ME+LIHHF L+T+GY VP GE Y+A+EAPKGE V+L+SDG +PYRCKIRAPG+A
Sbjct: 381 MKENMEALIHHFLLFTKGYTVPPGETYSAIEAPKGEMAVFLVSDGSERPYRCKIRAPGFA 440
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HL + L +GH LAD AI+G++D+VFGEVDR
Sbjct: 441 HLGCFDQLSRGHLLADAVAIIGTMDLVFGEVDR 473
>gi|163793190|ref|ZP_02187166.1| NADH dehydrogenase I, D subunit [alpha proteobacterium BAL199]
gi|159181836|gb|EDP66348.1| NADH dehydrogenase I, D subunit [alpha proteobacterium BAL199]
Length = 392
Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats.
Identities = 279/396 (70%), Positives = 331/396 (83%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + + + T+NFGPQHPAAHGVLRL+LE+DGE+VER DPHIGLLHRGTEKLIE KT+LQ
Sbjct: 1 MAEMQIKPLTMNFGPQHPAAHGVLRLVLEMDGEVVERADPHIGLLHRGTEKLIEYKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVPYFDRLDYVAPMNQEHA+ALAVEKLL +E+P RGQ IRVLY+EIGR+L+HLLN+TT A
Sbjct: 61 AVPYFDRLDYVAPMNQEHAFALAVEKLLRLEVPKRGQYIRVLYAEIGRVLNHLLNLTTFA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+DVGA+TP LWGFEEREKLM FYER SG+R+HAAYFRPGGVHQD+P L+EDI W + F
Sbjct: 121 LDVGAMTPLLWGFEEREKLMGFYERVSGARLHAAYFRPGGVHQDLPAGLLEDIKAWAEQF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P ++D+ LLT NRIFKQR V+IG V ++A GFSG ++RGSG WDLR SQPY+ Y
Sbjct: 181 PKFVDDMESLLTENRIFKQRTVDIGVVSRQEALDHGFSGPVLRGSGVPWDLRVSQPYDAY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+E+DFD+P+GK GDCY RYLVR+ E+R+S++II QC+ R+ GPV + D KI PK
Sbjct: 241 AEMDFDVPVGKTGDCYARYLVRVEELRQSLRIIDQCIERMPD----GPVKSDDRKITSPK 296
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
RA+MK+SME+LIHHFKLYTEGYHVP GE Y AVEAPKGEF V+L+SDG NKPYRCKIRAP
Sbjct: 297 RAEMKQSMEALIHHFKLYTEGYHVPAGETYTAVEAPKGEFAVFLVSDGSNKPYRCKIRAP 356
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+A L A +FL KGH LAD AI+GSLDIVFGE+DR
Sbjct: 357 GFAFLAATDFLTKGHMLADTVAIIGSLDIVFGEIDR 392
>gi|317146852|ref|XP_001821713.2| NADH-ubiquinone oxidoreductase subunit [Aspergillus oryzae RIB40]
Length = 521
Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats.
Identities = 240/393 (61%), Positives = 305/393 (77%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+K R +T+NFGPQHPAAHGVLRLILE++GE + R DPH+GLLHRGTEKLIE KT++QA+P
Sbjct: 133 RKIRHYTVNFGPQHPAAHGVLRLILEINGEEIVRADPHVGLLHRGTEKLIEYKTYMQALP 192
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M E Y+LAVEKLL IEIP R + IR ++ E+ RIL+HL++V + AMDV
Sbjct: 193 YFDRLDYVSMMTNEQCYSLAVEKLLNIEIPDRAKYIRTMFGEMTRILNHLMSVLSHAMDV 252
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP LWGFEEREKLM FYER SG+R+HAAY RPGGV QDIP L++DI W F
Sbjct: 253 GALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDIPLGLLDDIYQWATQFGDR 312
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ +LLT NRI+K R +G V DA F+GVM+RGSG WD+RKSQPY+ Y ++
Sbjct: 313 IDETEELLTDNRIWKARTQGVGVVSAADALNMSFTGVMLRGSGVPWDIRKSQPYDAYDKV 372
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FD+P+G +GDCYDRYL RM E R+S++II QC+N++ GPV D K+ PP RA
Sbjct: 373 EFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNQMPA----GPVKVEDYKLSPPPRAA 428
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK +ME+LIHHF L+++GY VP GE Y+A+EAPKGE GV+L+SDG +PYRCKIRAPG+A
Sbjct: 429 MKENMEALIHHFLLFSKGYAVPPGETYSAIEAPKGEMGVFLVSDGSERPYRCKIRAPGFA 488
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HL + + +GH LAD AI+G++D+VFGEVDR
Sbjct: 489 HLGGFDQISRGHLLADAVAIIGTMDLVFGEVDR 521
>gi|296811214|ref|XP_002845945.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma otae CBS
113480]
gi|238843333|gb|EEQ32995.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma otae CBS
113480]
Length = 473
Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats.
Identities = 244/393 (62%), Positives = 307/393 (78%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+K R +T+NFGPQHPAAHGVLRLILEL+GE + R DPH+GLLHRGTEKLIE KT++QA+P
Sbjct: 85 RKIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYMQALP 144
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M E ++LAVEKLL IE+P R + IR ++ EI RIL+HL++V + AMDV
Sbjct: 145 YFDRLDYVSMMTNEQCFSLAVEKLLNIEVPERAKWIRTMFGEITRILNHLMSVLSHAMDV 204
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP LWGFEEREKLM FYER SG+R+HAAY RPGGVHQDIP L++DI W F
Sbjct: 205 GALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPVGLLDDIYQWATQFSDR 264
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ +LLT NRI+K R V +G V +A +GFSGVM+RGSG WD+RKSQPY+ Y ++
Sbjct: 265 IDETEELLTDNRIWKARTVGVGVVTAAEALNYGFSGVMLRGSGVPWDIRKSQPYDAYGQV 324
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FD+P+G +GDCYDRYL RM E R+S++II QC+N++ GPV D KI PP R
Sbjct: 325 EFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNKMPA----GPVRVEDYKISPPPRIA 380
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK +ME+LIHHF L+T+GY VP GE Y+A+EAPKGE V+L+SDG +PYRCKIRAPG+A
Sbjct: 381 MKENMEALIHHFLLFTKGYTVPPGETYSAIEAPKGEMAVFLVSDGSERPYRCKIRAPGFA 440
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HL + L +GH LAD AI+G++D+VFGEVDR
Sbjct: 441 HLACFDQLSRGHLLADAVAIIGTMDLVFGEVDR 473
>gi|110225668|ref|YP_665674.1| NADH dehydrogenase subunit 7 [Nephroselmis olivacea]
gi|11134164|sp|Q9TC96|NDUS2_NEPOL RecName: Full=NADH-ubiquinone oxidoreductase 49 kDa subunit;
AltName: Full=NADH dehydrogenase subunit 7
gi|6066183|gb|AAF03201.1|AF110138_33 NADH dehydrogenase subunit 7 [Nephroselmis olivacea]
Length = 398
Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats.
Identities = 263/393 (66%), Positives = 317/393 (80%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
KK ++FT+NFGPQHPAAHGVLRL+LEL+GE+V R DPHIGLLHRGTEKLIE KT+ QA+P
Sbjct: 10 KKVKNFTLNFGPQHPAAHGVLRLVLELNGEVVARADPHIGLLHRGTEKLIEYKTYTQALP 69
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M QEHAY+LAVEKLL E+P R Q IRVL+SEI RIL+HLL +TT AMDV
Sbjct: 70 YFDRLDYVSMMCQEHAYSLAVEKLLHCEVPERAQYIRVLFSEITRILNHLLALTTHAMDV 129
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP LW FEEREKL+ FYER SGSRMHAAY RPGGV D+P L EDI +C F S
Sbjct: 130 GALTPFLWAFEEREKLIEFYERVSGSRMHAAYIRPGGVACDLPANLCEDIYLFCQQFASR 189
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
++++ ++LT NRI+KQR V+IG V E+A+ WGFSGV++RGSG AWDLRK+QPY+ Y+ +
Sbjct: 190 IDEMEEMLTNNRIWKQRLVDIGIVTAENAFAWGFSGVLLRGSGVAWDLRKTQPYDVYNRM 249
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
FD+P+G GDCYDRYL R+ EMR+S+ II QC+N+L G + A D KI PP R+
Sbjct: 250 IFDVPVGTQGDCYDRYLCRVEEMRQSIHIIMQCLNQL----PKGMIKADDKKITPPSRSQ 305
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK+SMESLIHHFKL+TEGY VP E Y +VEAPKGEFGVYL+S+G N+PYRCKIRAPG+
Sbjct: 306 MKQSMESLIHHFKLFTEGYTVPNSETYTSVEAPKGEFGVYLVSNGTNRPYRCKIRAPGFL 365
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ ++ + K H LADV I+G+ DIVFGEVDR
Sbjct: 366 HLQGLDMMSKNHMLADVVTIIGTQDIVFGEVDR 398
>gi|113170488|ref|YP_717279.1| nad7 [Ostreococcus tauri]
gi|112806895|emb|CAL36401.1| unnamed protein product [Ostreococcus tauri]
Length = 394
Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats.
Identities = 259/396 (65%), Positives = 320/396 (80%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
++KK ++FT+NFGPQHPAAHGVLRL+LE++GE+VER DPHIGLLHRGTEKLIE K ++Q
Sbjct: 3 FEQKKLKNFTLNFGPQHPAAHGVLRLVLEMNGEVVERADPHIGLLHRGTEKLIEYKNYIQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+ M QEHAY+LAVE LL +P+R Q IRVL+SEI R+L+HLL ++ A
Sbjct: 63 ALPYFDRLDYVSMMAQEHAYSLAVENLLHCPVPLRAQYIRVLFSEITRLLNHLLALSCHA 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTP LW FEEREKLM FYER SG+R+HA+Y RPGGV QD+P L +D+ +C +F
Sbjct: 123 MDVGALTPFLWAFEEREKLMEFYERVSGARLHASYIRPGGVAQDLPQGLCDDMHTFCQTF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
S ++++ ++LT NRI+KQR V+IGTV +DA +GFSGVM+RGSG AWDLRK+QPYE Y
Sbjct: 183 ASRIDEMEEMLTQNRIWKQRLVDIGTVSAKDAISYGFSGVMLRGSGVAWDLRKTQPYEVY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
L+FDIP+G GDCYDRYL+R+ EMR+S+++I QC+N+L G V D KI PP
Sbjct: 243 ESLEFDIPVGSQGDCYDRYLIRIEEMRQSLRLIAQCLNKL----PQGLVKVDDKKISPPS 298
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R MK SMESLIHHFKL+TEG+ VP E Y VEAPKGEFGVYL+S+G NKPYRCKIRAP
Sbjct: 299 RKHMKESMESLIHHFKLFTEGFIVPASETYVGVEAPKGEFGVYLVSNGTNKPYRCKIRAP 358
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ HLQA++F+ K H LADV I+G+ DIVFGEVDR
Sbjct: 359 GFVHLQALDFMSKHHLLADVVTIIGTQDIVFGEVDR 394
>gi|156061625|ref|XP_001596735.1| NADH dehydrogenase I, D subunit [Sclerotinia sclerotiorum 1980]
gi|154700359|gb|EDO00098.1| NADH dehydrogenase I, D subunit [Sclerotinia sclerotiorum 1980
UF-70]
Length = 473
Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats.
Identities = 246/396 (62%), Positives = 309/396 (78%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
++K+K R +T+NFGPQHPAAHGVLRLILEL+GE + R DPH+GLLHRGTEKLIE KT++Q
Sbjct: 82 VEKRKIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRSDPHVGLLHRGTEKLIEYKTYIQ 141
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+ M E ++LAVEKLL +EIP R + IR L+ EI RIL+HL++V + A
Sbjct: 142 ALPYFDRLDYVSMMTNEQCFSLAVEKLLNVEIPERAKWIRTLFGEITRILNHLMSVLSHA 201
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTP LWGFEEREKLM FYER SG+R+HAAY RPGGVHQDIP L++DI W F
Sbjct: 202 MDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPVGLLDDIYQWATQF 261
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+++ +LLT NRI+ R +G V DA GF+GVM+RGSG WD+RKSQPY+ Y
Sbjct: 262 GDRIDETEELLTDNRIWIGRTKGVGVVSAADALNLGFTGVMLRGSGVPWDVRKSQPYDAY 321
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E++FD+P+G +GDCYDRYL RM E R+S++II QC+N++ GPV D KI PP
Sbjct: 322 GEVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNKM----PPGPVRVEDYKISPPP 377
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
RA MK +ME+LIHHF L+T+GY VP GE Y+A+EAPKGE GVY++SDG +PYRCKIRAP
Sbjct: 378 RAAMKENMEALIHHFLLFTKGYTVPPGETYSAIEAPKGEMGVYVVSDGSERPYRCKIRAP 437
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHL + + +GH LAD AI+G++D+VFGEVDR
Sbjct: 438 GFAHLSGFDQISRGHLLADAVAIIGTMDLVFGEVDR 473
>gi|88608146|ref|YP_506448.1| NADH dehydrogenase subunit D [Neorickettsia sennetsu str. Miyayama]
gi|123491783|sp|Q2GDJ8|NUOD_NEOSM RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|88600315|gb|ABD45783.1| NADH dehydrogenase I, D subunit [Neorickettsia sennetsu str.
Miyayama]
Length = 388
Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats.
Identities = 262/387 (67%), Positives = 310/387 (80%), Gaps = 4/387 (1%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+NFGPQHPAAHGVLRLI++LDGE VER+DPHIG LHRGTEKLIE KT+LQA+PYFDRLD
Sbjct: 6 ELNFGPQHPAAHGVLRLIMQLDGETVERLDPHIGFLHRGTEKLIEHKTYLQALPYFDRLD 65
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
YV+PM QEHAY+L VEKLLGI +P R Q +RV++ EI RIL+HLLNVTT A+DVGA+ P
Sbjct: 66 YVSPMAQEHAYSLCVEKLLGITVPPRAQYLRVIFVEITRILNHLLNVTTHALDVGAMNPL 125
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
W FEEREK++ FYE+ASG+R HAAY RPGG+ DIP L E+I + +SF L+D++D
Sbjct: 126 FWMFEEREKMLSFYEKASGARFHAAYIRPGGLAADIPDGLDEEIMSFLESFTHKLDDVAD 185
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+LT N IFKQR V+IG V +A GFSG ++R SG WDLRKSQPYE Y LDF IP+
Sbjct: 186 VLTDNPIFKQRLVDIGKVSKREAVALGFSGPVLRASGVPWDLRKSQPYEVYESLDFAIPV 245
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
G GD YDRYLVRM EM ESVKII+QC+++L GPV D K+ PP RA+MK SME
Sbjct: 246 GSCGDSYDRYLVRMAEMYESVKIIKQCIDKL----PEGPVVVDDRKVAPPSRAEMKTSME 301
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
+LIHHFKLY+EGYHVP GE Y AVE+PKGEFGVY++SDG NKPYRC+IRAPG+ HLQA++
Sbjct: 302 ALIHHFKLYSEGYHVPEGETYFAVESPKGEFGVYIVSDGTNKPYRCRIRAPGFVHLQALD 361
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVDR 396
L + H LADV AILGSLDIVFGEVDR
Sbjct: 362 TLSRKHLLADVPAILGSLDIVFGEVDR 388
>gi|144899468|emb|CAM76332.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Magnetospirillum
gryphiswaldense MSR-1]
Length = 392
Score = 457 bits (1177), Expect = e-126, Method: Composition-based stats.
Identities = 267/396 (67%), Positives = 319/396 (80%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + + +S+ INFGPQHPAAHGVLRLILE+ GE V+R DPHIGLLHRGTEKLIE K + Q
Sbjct: 1 MAESQIKSYNINFGPQHPAAHGVLRLILEMSGETVDRADPHIGLLHRGTEKLIEHKIYTQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A PYFDRLDYV MNQEHA+ +A EKLLG+ +P+RGQ IRVLY E+GRIL+H+LN+ +
Sbjct: 61 ATPYFDRLDYVGTMNQEHAFVMAAEKLLGVTVPLRGQYIRVLYCEMGRILNHILNICSFV 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
DVG +TP LWGFEEREKLM FYERA G+R+HA YFR GGV QD+P L+EDI WCD +
Sbjct: 121 FDVGGMTPMLWGFEEREKLMEFYERACGARLHANYFRVGGVAQDLPAGLLEDIDAWCDQY 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P ++DI L+T NRIFKQR V+IGTV E A WGF+G +R SG AWDLRKSQPYE Y
Sbjct: 181 PKVIDDIETLVTENRIFKQRTVDIGTVSAEQALDWGFTGPNLRASGIAWDLRKSQPYEVY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+DFDIP+GK GDCYDRYL+R++EMRESVKI++QC+ + GPV D K+ PP
Sbjct: 241 DRMDFDIPVGKVGDCYDRYLIRIIEMRESVKIMKQCIREM----PSGPVKVDDRKVSPPP 296
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
RA+MK+SME+LIHHFKL+TEG+HVP GEVYAAVEAPKGEF VYL++DG NKPYRCKIR P
Sbjct: 297 RAEMKQSMEALIHHFKLFTEGFHVPAGEVYAAVEAPKGEFAVYLVADGSNKPYRCKIRPP 356
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GY HLQA++ + KGH LADV A +GS+DIVFGE+DR
Sbjct: 357 GYVHLQALDMMSKGHMLADVVANIGSIDIVFGEIDR 392
>gi|326485519|gb|EGE09529.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Trichophyton equinum
CBS 127.97]
Length = 473
Score = 457 bits (1177), Expect = e-126, Method: Composition-based stats.
Identities = 245/393 (62%), Positives = 307/393 (78%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+K R +T+NFGPQHPAAHGVLRLILEL+GE + R DPH+GLLHRGTEKLIE KT++QA+P
Sbjct: 85 RKIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYMQALP 144
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M E ++LAVEKLL IEIP R + IR ++ EI RIL+HL++V + AMDV
Sbjct: 145 YFDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKWIRTMFGEITRILNHLMSVLSHAMDV 204
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP LWGFEEREKLM FYER SG+R+HAAY RPGGVHQDIP L++DI W F
Sbjct: 205 GALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPLGLLDDIYQWATQFADR 264
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ +LLT NRI+K R V +G V +A +GFSGVM+RGSG WD+RKSQPY+ Y ++
Sbjct: 265 IDETEELLTDNRIWKARTVGVGVVTAAEALNYGFSGVMLRGSGVPWDIRKSQPYDAYGQV 324
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FD+P+G +GDCYDRYL RM E R+S++II QC+N++ GPV D KI PP R
Sbjct: 325 EFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNKMPA----GPVRVEDYKISPPPRIA 380
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK +ME+LIHHF L+T+GY VP GE Y+A+EAPKGE V+L+SDG +PYRCKIRAPG+A
Sbjct: 381 MKENMEALIHHFLLFTKGYTVPPGETYSAIEAPKGEMAVFLVSDGSERPYRCKIRAPGFA 440
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HL + L +GH LAD AI+G++D+VFGEVDR
Sbjct: 441 HLGCFDQLSRGHLLADAVAIIGTMDLVFGEVDR 473
>gi|73667050|ref|YP_303066.1| NADH dehydrogenase subunit D [Ehrlichia canis str. Jake]
gi|123614938|sp|Q3YS37|NUOD_EHRCJ RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|72394191|gb|AAZ68468.1| NADH dehydrogenase subunit D [Ehrlichia canis str. Jake]
Length = 393
Score = 457 bits (1177), Expect = e-126, Method: Composition-based stats.
Identities = 261/395 (66%), Positives = 329/395 (83%), Gaps = 4/395 (1%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
D+ K T+NFGPQHPAAHGV+RL+LE+ GE++ER+DPHIGLLHRGTEKLIE KT+LQA
Sbjct: 3 DQVKITPMTLNFGPQHPAAHGVMRLVLEMGGEVIERIDPHIGLLHRGTEKLIEYKTYLQA 62
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+PYFDRLDYV+PM QEHAY+L VEKLL EIPIR + +RV++ E+ RIL+HLLN+++QA+
Sbjct: 63 LPYFDRLDYVSPMAQEHAYSLCVEKLLKCEIPIRAKYLRVIFCELTRILNHLLNISSQAL 122
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D+GA+TP LW FEEREK++ FYERASG+R H+AY RPGGV D+P +L++DI + +F
Sbjct: 123 DIGAMTPLLWMFEEREKILGFYERASGARFHSAYIRPGGVAADVPSDLIDDIFKFVSTFS 182
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
++DI DLLT NRI+KQRNV+IG V + A WGFSG M+R G WDLRKSQPYE Y
Sbjct: 183 KFMDDIDDLLTENRIWKQRNVDIGVVSKKQALDWGFSGPMLRACGIPWDLRKSQPYEIYE 242
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+L+F+IP+G++GDCYDRYLVRM E+R+S+K++ QC++RL GPV D KI PPKR
Sbjct: 243 DLEFEIPVGENGDCYDRYLVRMAEIRQSIKLLEQCLDRLPD----GPVKTDDRKIAPPKR 298
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
++MK SME+LIHHFKLY+EGY VPVGE Y AVEAPKGEFGVY++SDG NKPYRC+IRAPG
Sbjct: 299 SEMKESMEALIHHFKLYSEGYSVPVGETYMAVEAPKGEFGVYIVSDGTNKPYRCRIRAPG 358
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AHLQA++ + KGH LAD++AI+GSLDIVFGE+DR
Sbjct: 359 FAHLQAIDIIAKGHMLADLTAIIGSLDIVFGEIDR 393
>gi|46202359|ref|ZP_00208487.1| COG0649: NADH:ubiquinone oxidoreductase 49 kD subunit 7
[Magnetospirillum magnetotacticum MS-1]
Length = 392
Score = 457 bits (1177), Expect = e-126, Method: Composition-based stats.
Identities = 267/396 (67%), Positives = 322/396 (81%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + + +S+TINFGPQHPAAHGVLRLILE+ GE+V+R DPH+GLLHRGTEKLIE KT+LQ
Sbjct: 1 MAESQIQSYTINFGPQHPAAHGVLRLILEMSGEVVDRADPHVGLLHRGTEKLIEHKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A PYFDRLDYV MNQEHA+ LA E+LLGI+IP+R + IR LY EIGRIL+HLLNVT
Sbjct: 61 ATPYFDRLDYVGTMNQEHAFVLATERLLGIDIPMRAKFIRTLYDEIGRILNHLLNVTAFI 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
DVG +TP L+GFEEREKLM FYER G+R+HA Y+RPGGV D+P L+EDI WC++F
Sbjct: 121 FDVGGMTPLLYGFEEREKLMEFYERVCGARLHANYYRPGGVAADLPNGLLEDIAEWCETF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P+ L+DI L T NRIFKQR V+IGTV E A WGF+G +R SG AWDLRK+QPYE Y
Sbjct: 181 PAVLDDIETLATDNRIFKQRVVDIGTVTAEQALDWGFTGPNLRASGIAWDLRKAQPYEVY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+++FDIP+GK+GD YDRYLVR++EMRES+KI++QC+ ++ G GPV D K+ PPK
Sbjct: 241 DQMEFDIPVGKNGDGYDRYLVRVLEMRESIKIMKQCIAKMPG----GPVRIEDNKVTPPK 296
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
RA+MK SMESLIHHFKL+TEG+ VPVGE Y A+EAPKGEF VYLI+DG KPYRCKIR P
Sbjct: 297 RAEMKTSMESLIHHFKLFTEGFRVPVGETYTAIEAPKGEFAVYLIADGTGKPYRCKIRPP 356
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GY HLQA++ + KGH LADV A +GS+DIVFGE+DR
Sbjct: 357 GYVHLQALDMMSKGHMLADVVANIGSIDIVFGEIDR 392
>gi|121601914|ref|YP_989073.1| NADH dehydrogenase subunit D [Bartonella bacilliformis KC583]
gi|218534390|sp|A1USX0|NUOD_BARBK RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|120614091|gb|ABM44692.1| NADH dehydrogenase (quinone), D subunit [Bartonella bacilliformis
KC583]
Length = 396
Score = 457 bits (1177), Expect = e-126, Method: Composition-based stats.
Identities = 301/396 (76%), Positives = 349/396 (88%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + R+F INFGPQHPAAHGVLR++LELDGE+VERVDPHIGLLHRGTEKL+ETKT+LQ
Sbjct: 1 MAEVNVRNFNINFGPQHPAAHGVLRMVLELDGEVVERVDPHIGLLHRGTEKLMETKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A PY DRLDYVAPMNQEHA+ LAVEKLLG+E+P RGQLIRVL+SEIGR+L+HLLNVTTQA
Sbjct: 61 AGPYLDRLDYVAPMNQEHAFVLAVEKLLGVEVPKRGQLIRVLFSEIGRLLNHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFE+REKLM+FYERA G+R+HA YFRPGGVHQD+P L+EDIG + D F
Sbjct: 121 MDVGALTPPLWGFEQREKLMIFYERACGARLHANYFRPGGVHQDLPEVLIEDIGNFIDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
AL ++ L+T NRIFKQRNV+IG V +++AW GFSGVMIRG+G WDLRKSQPYECY
Sbjct: 181 LVALGNLDALITPNRIFKQRNVDIGVVSIDEAWARGFSGVMIRGAGVPWDLRKSQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E++FDIP+GK+ DCYDRYL+RM EMR+S KI+RQCV+RLL K GPVS+ D KIVPPK
Sbjct: 241 DEMEFDIPVGKNSDCYDRYLIRMEEMRQSAKIMRQCVDRLLSTEKDGPVSSLDRKIVPPK 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R++MK SME+LIHHFKLYTEG+H P GEVY AVEAPKGEFGVYL+SDG NKPYR K+RAP
Sbjct: 301 RSEMKNSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKGEFGVYLVSDGTNKPYRVKLRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHLQAM+FL +GH LAD +AILGS+DIVFGEVDR
Sbjct: 361 GFAHLQAMDFLTRGHMLADATAILGSIDIVFGEVDR 396
>gi|194769679|ref|XP_001966929.1| GF19015 [Drosophila ananassae]
gi|190618028|gb|EDV33552.1| GF19015 [Drosophila ananassae]
Length = 470
Score = 457 bits (1177), Expect = e-126, Method: Composition-based stats.
Identities = 247/394 (62%), Positives = 308/394 (78%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+K R+ T+NFGPQHPAAHGVLRL+LELDGE V R DPHIGLLHRGTEKLIE KT+ QA+
Sbjct: 81 EKSVRNLTLNFGPQHPAAHGVLRLVLELDGETVMRADPHIGLLHRGTEKLIEYKTYTQAL 140
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E Y+LAVEKLL IE+P+R + IR L++EI RIL+H++ V T A+D
Sbjct: 141 PYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYIRTLFAEITRILNHIMAVGTHALD 200
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTP W FEEREK+M FYER SG+RMHAAY RPGGV DIP L++DI + F
Sbjct: 201 VGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDIPLGLLDDIYEFSSKFSE 260
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+++ D+LT NRI+ QR +IG V E+A +GFSGVM+RGSG WDLRK QPY+ Y+
Sbjct: 261 RLDEVEDVLTTNRIWVQRTEDIGIVTAEEALNFGFSGVMLRGSGIKWDLRKQQPYDAYNL 320
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+DFD+PIG GDCYDRYL R+ EMR+S++II QC+N++ G + D K+ PP R
Sbjct: 321 VDFDVPIGTKGDCYDRYLCRVEEMRQSLRIIDQCLNQM----PSGEIKTDDAKVAPPSRF 376
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SME+LIHHFKL+T+GY VP G Y A+EAPKGEFGVY++SDG ++PYRCKI+APG+
Sbjct: 377 EMKTSMEALIHHFKLFTQGYQVPPGATYTAIEAPKGEFGVYIVSDGSSRPYRCKIKAPGF 436
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL A+E + K H LADV AI+G+LD+VFGE+DR
Sbjct: 437 AHLAALEKIGKQHMLADVVAIIGTLDVVFGEIDR 470
>gi|218529211|ref|YP_002420027.1| NADH dehydrogenase I, D subunit [Methylobacterium chloromethanicum
CM4]
gi|218521514|gb|ACK82099.1| NADH dehydrogenase I, D subunit [Methylobacterium chloromethanicum
CM4]
Length = 396
Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats.
Identities = 294/396 (74%), Positives = 345/396 (87%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + R+F+INFGPQHPAAHGVLRL+LELDGE+VERVDPHIGLLHRGTEKLIE KT+LQ
Sbjct: 1 MTEHNIRNFSINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEHKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A PYFDRLDYVAPMNQEHA+ LA+E+L GIE+P R QLIR L+ EIGR+LSHLLNVTTQA
Sbjct: 61 ATPYFDRLDYVAPMNQEHAFCLAIERLAGIEVPRRAQLIRTLFCEIGRLLSHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLM+FYERASG+R+HA YFRPGGVHQD+PP L++DI +CD F
Sbjct: 121 MDVGALTPPLWGFEEREKLMIFYERASGARLHANYFRPGGVHQDLPPALIDDIEAFCDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
++D+ +L+ NRIFKQRNV+IG V +++A WGFSGVM+RGSG WDLRKSQPYE Y
Sbjct: 181 LKVVDDLDNLVMANRIFKQRNVDIGIVSVDEAMAWGFSGVMVRGSGIPWDLRKSQPYELY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E++FDIP+GK+GD YDR ++RM EMRESVKI+RQCV +L GP+++ D K PP
Sbjct: 241 EEMEFDIPVGKNGDTYDRQVIRMEEMRESVKIMRQCVTKLREPAGQGPIASIDGKFAPPP 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MKRSME+LIHHFKLYTEG+HVP GEVYAAVEAPKGEFGVYL+SDG NKPYRCKIRAP
Sbjct: 301 RREMKRSMEALIHHFKLYTEGFHVPEGEVYAAVEAPKGEFGVYLVSDGTNKPYRCKIRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHLQAM+++C+GH LADVS +LG+LDIVFGEVDR
Sbjct: 361 GFAHLQAMDWMCRGHLLADVSCVLGTLDIVFGEVDR 396
>gi|238496957|ref|XP_002379714.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, putative
[Aspergillus flavus NRRL3357]
gi|83769576|dbj|BAE59711.1| unnamed protein product [Aspergillus oryzae]
gi|220694594|gb|EED50938.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, putative
[Aspergillus flavus NRRL3357]
Length = 476
Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats.
Identities = 240/393 (61%), Positives = 305/393 (77%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+K R +T+NFGPQHPAAHGVLRLILE++GE + R DPH+GLLHRGTEKLIE KT++QA+P
Sbjct: 88 RKIRHYTVNFGPQHPAAHGVLRLILEINGEEIVRADPHVGLLHRGTEKLIEYKTYMQALP 147
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M E Y+LAVEKLL IEIP R + IR ++ E+ RIL+HL++V + AMDV
Sbjct: 148 YFDRLDYVSMMTNEQCYSLAVEKLLNIEIPDRAKYIRTMFGEMTRILNHLMSVLSHAMDV 207
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP LWGFEEREKLM FYER SG+R+HAAY RPGGV QDIP L++DI W F
Sbjct: 208 GALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDIPLGLLDDIYQWATQFGDR 267
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ +LLT NRI+K R +G V DA F+GVM+RGSG WD+RKSQPY+ Y ++
Sbjct: 268 IDETEELLTDNRIWKARTQGVGVVSAADALNMSFTGVMLRGSGVPWDIRKSQPYDAYDKV 327
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FD+P+G +GDCYDRYL RM E R+S++II QC+N++ GPV D K+ PP RA
Sbjct: 328 EFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNQMPA----GPVKVEDYKLSPPPRAA 383
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK +ME+LIHHF L+++GY VP GE Y+A+EAPKGE GV+L+SDG +PYRCKIRAPG+A
Sbjct: 384 MKENMEALIHHFLLFSKGYAVPPGETYSAIEAPKGEMGVFLVSDGSERPYRCKIRAPGFA 443
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HL + + +GH LAD AI+G++D+VFGEVDR
Sbjct: 444 HLGGFDQISRGHLLADAVAIIGTMDLVFGEVDR 476
>gi|115966510|ref|XP_001187636.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
Length = 465
Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats.
Identities = 236/396 (59%), Positives = 301/396 (76%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ +K + INFGPQHPAAHGVLRL+LEL GE + R DPHIGLLHRGTEKLIE KT++Q
Sbjct: 74 IAEKDVANLVINFGPQHPAAHGVLRLVLELSGESIVRCDPHIGLLHRGTEKLIEYKTYMQ 133
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+ M E AY+LAVEK+L I +P R + IRV+ E+ RI +H++ V T A
Sbjct: 134 ALPYFDRLDYVSMMCNEQAYSLAVEKMLNITVPERAKYIRVMMGELTRIANHIMAVGTHA 193
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+D+GA+TP W FEEREK YER G+RMHAAY RPGGV QD+P ++D+ + +F
Sbjct: 194 LDIGAMTPFFWLFEEREKTFELYERVCGARMHAAYVRPGGVSQDLPLGFLDDMYDFIKNF 253
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
++++ ++LT NRI+K R V+IG V EDA +GFSGVM+RGSG WDLRK QPY+ Y
Sbjct: 254 SIRIDELEEMLTNNRIWKDRTVDIGVVTAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGY 313
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+++FDIPIG GDCYDRYL R+ EMR+S++I+ QC+N + G + D KI PP
Sbjct: 314 EKMNFDIPIGSKGDCYDRYLCRVEEMRQSLRIVHQCLNEM----PEGEIKVDDHKISPPG 369
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
RA+MK SMESLIHHFK +T+G+ VP G Y A+EAPKGEFGVY++SDG +KPYRCKIRAP
Sbjct: 370 RAEMKDSMESLIHHFKHFTQGFQVPPGATYTAIEAPKGEFGVYMVSDGSSKPYRCKIRAP 429
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ HL ++ +CKGH LADV AI+G+LD+VFGEVDR
Sbjct: 430 GFLHLAGLDKVCKGHMLADVVAIIGTLDVVFGEVDR 465
>gi|258576269|ref|XP_002542316.1| NADH dehydrogenase (quinone), D subunit [Uncinocarpus reesii 1704]
gi|237902582|gb|EEP76983.1| NADH dehydrogenase (quinone), D subunit [Uncinocarpus reesii 1704]
Length = 470
Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats.
Identities = 243/393 (61%), Positives = 308/393 (78%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+K R +T+NFGPQHPAAHGVLRLILEL+GE + R DPH+GLLHRGTEKLIE KT++QA+P
Sbjct: 82 RKIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYMQALP 141
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M E ++LAVEKLL IEIP R + IR L+ EI R+L+HL++V + AMDV
Sbjct: 142 YFDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKWIRTLFGEITRVLNHLMSVLSHAMDV 201
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP LWGFEEREKLM FYER SG+R+HAAY RPGGVHQD+P L++DI W F
Sbjct: 202 GALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDLPLGLLDDIYQWATQFGDR 261
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ +LLT NRI+K R +G V DA +GF+GVM+RGSG WD+RKSQPY+ Y ++
Sbjct: 262 IDETEELLTDNRIWKARTQGVGVVSAADALNFGFTGVMLRGSGIPWDIRKSQPYDAYDQV 321
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FD+P+G +GDCYDRYL RM E R+S++II QC+N++ GPV D KI PP RA
Sbjct: 322 EFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNKMPA----GPVRVEDYKINPPPRAA 377
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK +ME+LIHHF L+T+GY VP GE Y+A+EAPKGE GV+++SDG +PYRCKIRAPG+A
Sbjct: 378 MKENMEALIHHFLLFTKGYAVPPGETYSAIEAPKGEMGVFVVSDGSERPYRCKIRAPGFA 437
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HL + + +GH LAD AI+G++D+VFGEVDR
Sbjct: 438 HLACFDQISRGHLLADAVAIIGTMDLVFGEVDR 470
>gi|88658000|ref|YP_507426.1| NADH dehydrogenase subunit D [Ehrlichia chaffeensis str. Arkansas]
gi|123493275|sp|Q2GGK7|NUOD_EHRCR RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|88599457|gb|ABD44926.1| NADH dehydrogenase I, D subunit [Ehrlichia chaffeensis str.
Arkansas]
Length = 393
Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats.
Identities = 262/395 (66%), Positives = 329/395 (83%), Gaps = 4/395 (1%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
D+ K T+NFGPQHPAAHGV+RL+LE+ GE++ER+DPHIGLLHRGTEKLIE KT+LQA
Sbjct: 3 DRVKITPMTLNFGPQHPAAHGVMRLVLEMGGEVIERIDPHIGLLHRGTEKLIEYKTYLQA 62
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+PYFDRLDYV+PM QEHAY+L VEKLL EIPIR + +RV++ E+ RIL+HLLN+++QA+
Sbjct: 63 LPYFDRLDYVSPMCQEHAYSLCVEKLLKCEIPIRAKYLRVIFCELTRILNHLLNISSQAL 122
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D+GA+TP LW FEEREK++ FYERASG+R H+AY RPGGV D+P +L++DI + +FP
Sbjct: 123 DIGAMTPLLWMFEEREKILGFYERASGARFHSAYIRPGGVAADVPDDLIDDIFKFIKTFP 182
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
++D+ +LLT NRI+KQRNV+IG V E A WGFSG M+R G WDLRKSQPYE Y
Sbjct: 183 KFIDDVDELLTENRIWKQRNVDIGIVSKEQALDWGFSGPMLRACGIPWDLRKSQPYEIYE 242
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+L+F+IPIGK GDCYDRYLVRM E+R+S+K++ QC+NRL GP+ D KI PPKR
Sbjct: 243 DLEFEIPIGKKGDCYDRYLVRMAEIRQSIKLLEQCLNRLPN----GPIKTDDRKIAPPKR 298
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
++MK SME+LIHHFKLY+EGY VP+GE Y AVEAPKGEFGVY++SDG NKPYRC+IRAPG
Sbjct: 299 SEMKESMEALIHHFKLYSEGYSVPIGETYMAVEAPKGEFGVYIVSDGTNKPYRCRIRAPG 358
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AHLQA++ + KGH LAD++AI+GSLDIVFGE+DR
Sbjct: 359 FAHLQAIDMMAKGHMLADLTAIIGSLDIVFGEIDR 393
>gi|225562811|gb|EEH11090.1| NADH dehydrogenase I [Ajellomyces capsulatus G186AR]
Length = 479
Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats.
Identities = 245/393 (62%), Positives = 308/393 (78%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+K R +T+NFGPQHPAAHGVLRLILEL+GE + R DPH+GLLHRGTEKLIE KT++QA+P
Sbjct: 91 RKIRHYTVNFGPQHPAAHGVLRLILELNGEEIIRADPHVGLLHRGTEKLIEYKTYMQALP 150
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M E ++LAVEKLL +EIP R + IR L+ EI RIL+HL++V + AMDV
Sbjct: 151 YFDRLDYVSMMTNEQCFSLAVEKLLNVEIPDRAKWIRTLFGEITRILNHLMSVLSHAMDV 210
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP LWGFEEREKLM FYER SG+R+HAAY RPGGVHQDIP L++DI W F
Sbjct: 211 GALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPLGLLDDIYQWATQFSDR 270
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ +LLT NRI+K R +G V +A +GF+GVM+RGSG WD+RKSQPY+ Y E+
Sbjct: 271 IDETEELLTDNRIWKARTQGVGVVTAAEALNYGFTGVMLRGSGVPWDIRKSQPYDAYGEV 330
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FD+P+G +GDCYDRYL RM E R+S++II QC+N++ GPV D KI PP RA
Sbjct: 331 EFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNKMPA----GPVRVEDYKISPPPRAA 386
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK +ME+LIHHF L+T+GY VP GE Y+A+EAPKGE GVY++SDG +PYRCKIRAPG+A
Sbjct: 387 MKENMEALIHHFLLFTKGYAVPPGETYSAIEAPKGEMGVYVVSDGSERPYRCKIRAPGFA 446
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HL + + +GH LAD AI+G++D+VFGEVDR
Sbjct: 447 HLSCFDQISRGHLLADAVAIIGTMDLVFGEVDR 479
>gi|157129189|ref|XP_001655316.1| NADH-ubiquinone oxidoreductase fe-s protein 2 (ndufs2) [Aedes
aegypti]
gi|108872313|gb|EAT36538.1| NADH-ubiquinone oxidoreductase fe-s protein 2 (ndufs2) [Aedes
aegypti]
Length = 468
Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats.
Identities = 249/394 (63%), Positives = 309/394 (78%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+K R+ INFGPQHPAAHGVLRL+LELDGE V R DPHIGLLHRGTEKLIE KT+ QA+
Sbjct: 79 EKTVRNVKINFGPQHPAAHGVLRLVLELDGETVMRADPHIGLLHRGTEKLIEYKTYTQAL 138
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E Y+LAVEKLL I+IP+R + IRVL+ EI RIL+H++ + T A+D
Sbjct: 139 PYFDRLDYVSMMCNEQCYSLAVEKLLNIDIPLRAKYIRVLFGEITRILNHIMAIGTHALD 198
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTP W FEEREK+M FYER SG+RMHAAY RPGGV QD+P L++DI + F
Sbjct: 199 VGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSQDLPLGLLDDIYEFASKFAE 258
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+++ D+LT NRI+ QR +IG V EDA +GFSGVM+RGSG WDLRKSQPY+ Y
Sbjct: 259 RLDEVEDVLTTNRIWVQRTQDIGIVTAEDALNYGFSGVMLRGSGIKWDLRKSQPYDAYHL 318
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+DFD+PIG GDCYDRYL R+ EMR+S++II QC+N++ G + D K+ PP R+
Sbjct: 319 VDFDVPIGTKGDCYDRYLCRVEEMRQSLRIIDQCLNQMPA----GDIKTDDAKLTPPSRS 374
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SME+LIHHFKL+T+GY VP G Y A+EAPKGEFGVYL+SDG ++PYRCKI+APG+
Sbjct: 375 EMKTSMEALIHHFKLFTQGYQVPPGSTYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGF 434
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL A++ + K H LADV AI+G+LD+VFGE+DR
Sbjct: 435 AHLAALDKVGKHHMLADVVAIIGTLDVVFGEIDR 468
>gi|319898885|ref|YP_004158978.1| NADH dehydrogenase I, D subunit [Bartonella clarridgeiae 73]
gi|319402849|emb|CBI76400.1| NADH dehydrogenase I, D subunit [Bartonella clarridgeiae 73]
Length = 396
Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats.
Identities = 299/396 (75%), Positives = 348/396 (87%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + R+F INFGPQHPAAHGVLR++LELDGE+VERVDPHIGLLHRGTEKL+ETKT+LQ
Sbjct: 1 MAEVNVRNFNINFGPQHPAAHGVLRMVLELDGEVVERVDPHIGLLHRGTEKLMETKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A PY DRLDYVAPMNQEHA+ LA+EKLLG+E+P RGQLIRVL+SEIGRIL+HLLNVTTQA
Sbjct: 61 AGPYLDRLDYVAPMNQEHAFVLAIEKLLGVEVPKRGQLIRVLFSEIGRILNHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFE+REKLM+FYERA G+R+HA YFRPGGVH+D+P L+EDIG + D F
Sbjct: 121 MDVGALTPPLWGFEQREKLMIFYERACGARLHANYFRPGGVHRDLPESLIEDIGNFIDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
AL+ + L+T NRIFKQRNV+IG V + +AW FSGVMIRG+G WDLRKSQPYECY
Sbjct: 181 LIALDKLDALITPNRIFKQRNVDIGVVSINEAWARAFSGVMIRGAGVPWDLRKSQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E++FDIP+GK+ DCYDRYL+RM EMR+S KI+RQCVNRLLG + GPVS+ D KIVPPK
Sbjct: 241 DEMEFDIPVGKNSDCYDRYLIRMEEMRQSTKIMRQCVNRLLGSERNGPVSSLDRKIVPPK 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R++MK SME+LIHHFKLYTEG+H P GEVY AVEAPKGEFGVYL+SDG NKPYR K+RAP
Sbjct: 301 RSEMKNSMEALIHHFKLYTEGFHTPSGEVYVAVEAPKGEFGVYLVSDGTNKPYRVKLRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHLQAM+FL +GH LAD +AILGS+DIVFGE+DR
Sbjct: 361 GFAHLQAMDFLTRGHMLADATAILGSIDIVFGEIDR 396
>gi|307942120|ref|ZP_07657471.1| NADH dehydrogenase (quinone), d subunit [Roseibium sp. TrichSKD4]
gi|307774406|gb|EFO33616.1| NADH dehydrogenase (quinone), d subunit [Roseibium sp. TrichSKD4]
Length = 394
Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats.
Identities = 317/396 (80%), Positives = 361/396 (91%), Gaps = 2/396 (0%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + + R+F INFGPQHPAAHGVLRL+LELDGE+V RVDPHIGLLHRGTEKLIE KT+LQ
Sbjct: 1 MAEAQVRNFNINFGPQHPAAHGVLRLVLELDGEVVTRVDPHIGLLHRGTEKLIEHKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVPYFDRLDYVAPMNQEHAYALAVE++LGIE+P+RGQLIRVLYSEIGR+LSHLLN+TTQA
Sbjct: 61 AVPYFDRLDYVAPMNQEHAYALAVERMLGIEVPMRGQLIRVLYSEIGRLLSHLLNITTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+DVGALTPPLWGFE RE+LMVFYERA G+RMHAAY RPGGVHQD+P +L++DI +CD F
Sbjct: 121 LDVGALTPPLWGFEPREELMVFYERACGARMHAAYVRPGGVHQDLPRDLLDDIWDFCDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L+DI LLT NRIFKQRNV+IG V L+DAW WGFSGVM+RGSGAAWDLRKSQPYECY
Sbjct: 181 LQTLDDIEGLLTNNRIFKQRNVDIGVVSLDDAWAWGFSGVMVRGSGAAWDLRKSQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
++LDFDIPIGK+GDCYDRYL+RM EMR+SV+I++QC+ +L + GPVS++D KIVPPK
Sbjct: 241 ADLDFDIPIGKNGDCYDRYLIRMEEMRQSVRIMKQCLEKL--TIENGPVSSADGKIVPPK 298
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MKRSMESLIHHFKLYTEGYHVP GEVYAAVEAPKGEFGVYL+SDG NKPYRCKI+AP
Sbjct: 299 RGEMKRSMESLIHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYLVSDGTNKPYRCKIKAP 358
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GYAHL AM+F+C GHQLADVSA+LGS+DIVFGEVDR
Sbjct: 359 GYAHLSAMDFVCNGHQLADVSAVLGSMDIVFGEVDR 394
>gi|255933141|ref|XP_002558041.1| Pc12g12260 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582660|emb|CAP80853.1| Pc12g12260 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 473
Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats.
Identities = 240/394 (60%), Positives = 305/394 (77%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+K R +T+NFGPQHPAAHGVLRLILEL+GE + R DPH+GLLHRGTEKLIE KT++QA+
Sbjct: 84 DRKIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRSDPHVGLLHRGTEKLIEYKTYMQAL 143
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E ++LAVEKLL +EIP R + IR L+ E+ R+L+HL++V + AMD
Sbjct: 144 PYFDRLDYVSMMTNEQCFSLAVEKLLNVEIPDRAKWIRTLFGEMTRVLNHLMSVLSHAMD 203
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTP LWGFEEREKLM FYER SG+R+HAAY RPGGV QDIP L++DI W F
Sbjct: 204 VGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDIPIGLLDDIYQWATQFGD 263
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+++ +LLT NRI+K R +G V DA F+GVM+RGSG +D+RKSQPY+ Y +
Sbjct: 264 RIDETEELLTDNRIWKARTQGVGVVNATDALNMSFTGVMLRGSGVPYDIRKSQPYDAYDQ 323
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++FD+P+G +GDCYDRYL RM E R+S++II QC+N++ GPV D KI PP RA
Sbjct: 324 VEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNKMPA----GPVRVEDYKISPPPRA 379
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
MK +ME+LIHHF L+T+GY VP GE Y+A+EAPKGE GV+L+SDG +PYRCKIRAPG+
Sbjct: 380 AMKENMEALIHHFLLFTKGYSVPPGETYSAIEAPKGEMGVFLVSDGSERPYRCKIRAPGF 439
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL + + +GH LAD AI+G++D+VFGEVDR
Sbjct: 440 AHLGGFDQVSRGHLLADAVAIIGTMDLVFGEVDR 473
>gi|268370122|ref|NP_001161242.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial [Nasonia vitripennis]
Length = 467
Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats.
Identities = 245/393 (62%), Positives = 308/393 (78%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K ++ +NFGPQHPAAHGVLRL+LELDGE V DPHIGLLHRGTEKLIE KT++QA+P
Sbjct: 79 KTIKNIKVNFGPQHPAAHGVLRLVLELDGERVVSADPHIGLLHRGTEKLIEYKTYIQALP 138
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M E Y+LA+EKLL IE+P+R + IR LY EI RIL+H++ + T A+DV
Sbjct: 139 YFDRLDYVSMMCNEQCYSLAIEKLLNIEVPLRAKYIRTLYGEITRILNHIMGIGTHALDV 198
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP W FEEREKLM FYERASG+RMH AY RPGGV D+P L++DI W +
Sbjct: 199 GALTPFFWLFEEREKLMEFYERASGARMHTAYVRPGGVALDLPLGLMDDIYEWASKYAER 258
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++I D+LT NRI+ QR +IG + EDA +GFSGVM+RGSG WD+RKS+PY+ Y+ +
Sbjct: 259 IDEIEDVLTENRIWIQRTRDIGVISAEDALNYGFSGVMVRGSGIKWDIRKSEPYDAYNLV 318
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DFD+PIGK+GDCYDRYL+R+ EMR+S++II QC+N++ G V D KI PP R +
Sbjct: 319 DFDVPIGKNGDCYDRYLIRIEEMRQSLRIIEQCLNQMPA----GEVRTDDAKIAPPNRKE 374
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK SME+LIHHFKL+T+GY VP G Y +EAPKGEFGVYL+SDG +KPYRCKI+APG+A
Sbjct: 375 MKTSMEALIHHFKLFTQGYQVPPGATYTCIEAPKGEFGVYLVSDGSSKPYRCKIKAPGFA 434
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HL A++ + GH LADV AI+G+LD+VFGE+DR
Sbjct: 435 HLAALQKMGPGHMLADVVAIIGTLDVVFGEIDR 467
>gi|91084535|ref|XP_972884.1| PREDICTED: similar to CG1970 CG1970-PA [Tribolium castaneum]
gi|270009249|gb|EFA05697.1| hypothetical protein TcasGA2_TC015217 [Tribolium castaneum]
Length = 466
Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats.
Identities = 246/394 (62%), Positives = 308/394 (78%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++ ++ T+NFGPQHPAAHGVLRL++ELDGE+V R DPHIGLLHRGTEKLIE KT+ QA+
Sbjct: 77 ERSVKNLTLNFGPQHPAAHGVLRLVIELDGEMVRRADPHIGLLHRGTEKLIEYKTYTQAL 136
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E Y+LAVEKLL I++P+R + IR L++EI RIL+H++ V T A+D
Sbjct: 137 PYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRILNHIMAVGTHALD 196
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTP W FEEREK+M FYER SG+RMHAAY RPGGV D+P L++DI + F
Sbjct: 197 VGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFASKFGE 256
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+++ D+LT NRI+ QR +IG V EDA GFSGVM+RGSG WDLRK QPY+ Y
Sbjct: 257 RLDEVEDVLTTNRIWVQRTQDIGVVSAEDALNLGFSGVMLRGSGIKWDLRKVQPYDAYDL 316
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+DFD+PIG GDCYDRYL R+ EMR+S++II QC+N + G + D K+ PP RA
Sbjct: 317 VDFDVPIGVKGDCYDRYLCRVEEMRQSLRIIDQCLNNM----PPGEIKTDDAKLTPPSRA 372
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SME+LIHHFKL+T+GY VP G Y A+EAPKGEFGVYL+SDGG+KPYRCKI+APG+
Sbjct: 373 EMKTSMEALIHHFKLFTQGYQVPPGATYTAIEAPKGEFGVYLVSDGGSKPYRCKIKAPGF 432
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL A+E + K H LAD+ AI+G+LD+VFGE+DR
Sbjct: 433 AHLAALEKVGKNHMLADIVAIIGTLDVVFGEIDR 466
>gi|254796919|ref|YP_003081756.1| NADH dehydrogenase (quinone), d subunit [Neorickettsia risticii
str. Illinois]
gi|254590155|gb|ACT69517.1| NADH dehydrogenase (quinone), d subunit [Neorickettsia risticii
str. Illinois]
Length = 388
Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats.
Identities = 262/387 (67%), Positives = 312/387 (80%), Gaps = 4/387 (1%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+NFGPQHPAAHGVLRLI++LDGE VER+DPHIG LHRGTEKLIE KT+LQA+PYFDRLD
Sbjct: 6 ELNFGPQHPAAHGVLRLIMQLDGETVERLDPHIGFLHRGTEKLIEHKTYLQALPYFDRLD 65
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
YV+PM QEHAY+L VEKLLGI +P R Q +RV++ EI RIL+HLLN+TT A+DVGA+ P
Sbjct: 66 YVSPMAQEHAYSLCVEKLLGITVPPRAQYLRVIFVEITRILNHLLNITTHALDVGAMNPL 125
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
W FEEREK++ FYE+ASG+R HAAY RPGG+ DIP L E+I + +SFP L+D++D
Sbjct: 126 FWMFEEREKMLSFYEKASGARFHAAYIRPGGLAADIPDGLDEEIMSFLESFPHKLDDVAD 185
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+LT N IFKQR V+IG V ++A GFSG ++R SG WDLR+SQPYE Y LDF IP+
Sbjct: 186 VLTDNPIFKQRLVDIGKVSKKEAVALGFSGPVLRASGIPWDLRRSQPYEVYESLDFAIPV 245
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
G GD YDRYLVRM EM ESVKII+QC++RL GPV D K+ PP RA+MK SME
Sbjct: 246 GNCGDSYDRYLVRMAEMYESVKIIKQCIDRL----PEGPVVVDDRKVAPPSRAEMKTSME 301
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
+LIHHFKLY+EGYHVP GE Y AVE+PKGEFGVY++SDG NKPYRC+IRAPG+ HLQA++
Sbjct: 302 ALIHHFKLYSEGYHVPEGETYFAVESPKGEFGVYIVSDGTNKPYRCRIRAPGFVHLQALD 361
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVDR 396
L + H LADV AILGSLDIVFGEVDR
Sbjct: 362 ALSRKHLLADVPAILGSLDIVFGEVDR 388
>gi|74142353|dbj|BAE31936.1| unnamed protein product [Mus musculus]
gi|74198865|dbj|BAE30656.1| unnamed protein product [Mus musculus]
Length = 462
Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats.
Identities = 248/396 (62%), Positives = 314/396 (79%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ +K + T+NFGPQHPAAHGVLRL+LEL GE+V + DPHIGLLHRGTEKLIE KT+LQ
Sbjct: 71 LKEKAVTNMTLNFGPQHPAAHGVLRLVLELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQ 130
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+ M E AY++AVEKLL I+ P R Q IRVL+ EI RIL+H++ VTT A
Sbjct: 131 ALPYFDRLDYVSMMCNEQAYSIAVEKLLNIQPPPRAQWIRVLFGEITRILNHIMAVTTHA 190
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+D+GA+TP W FEEREK+ FYER SG+RMHAAY RPGGVHQD+P L++DI + +F
Sbjct: 191 LDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLLDDIYEFSKNF 250
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
++++ ++LT NRI++ R V+IG V EDA +GFSGVM+RGSG WDLRK+QPY+ Y
Sbjct: 251 SLRIDEVEEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVY 310
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+++FD+PIG GDCYDRYL R+ EMR+S++II QC+N++ G + D K+ PPK
Sbjct: 311 DQVEFDVPIGSRGDCYDRYLCRVEEMRQSLRIIEQCLNKM----PPGEIKVDDAKVSPPK 366
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
RA+MK SMESLIHHFKLYTEGY VP G Y A+EAPKGEFGVYL+SDG ++PYRCKI+AP
Sbjct: 367 RAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAP 426
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHL ++ + KGH LADV AI+G+ DIVFGE+DR
Sbjct: 427 GFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEIDR 462
>gi|23346461|ref|NP_694704.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial precursor [Mus musculus]
gi|47117273|sp|Q91WD5|NDUS2_MOUSE RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
2, mitochondrial; AltName: Full=Complex I-49kD;
Short=CI-49kD; AltName: Full=NADH-ubiquinone
oxidoreductase 49 kDa subunit; Flags: Precursor
gi|16359270|gb|AAH16097.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2 [Mus musculus]
gi|26347289|dbj|BAC37293.1| unnamed protein product [Mus musculus]
gi|74219567|dbj|BAE29554.1| unnamed protein product [Mus musculus]
gi|74224918|dbj|BAE38181.1| unnamed protein product [Mus musculus]
gi|148707169|gb|EDL39116.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, isoform CRA_b [Mus
musculus]
Length = 463
Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats.
Identities = 248/396 (62%), Positives = 314/396 (79%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ +K + T+NFGPQHPAAHGVLRL+LEL GE+V + DPHIGLLHRGTEKLIE KT+LQ
Sbjct: 72 LKEKAVTNMTLNFGPQHPAAHGVLRLVLELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQ 131
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+ M E AY++AVEKLL I+ P R Q IRVL+ EI RIL+H++ VTT A
Sbjct: 132 ALPYFDRLDYVSMMCNEQAYSIAVEKLLNIQPPPRAQWIRVLFGEITRILNHIMAVTTHA 191
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+D+GA+TP W FEEREK+ FYER SG+RMHAAY RPGGVHQD+P L++DI + +F
Sbjct: 192 LDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLLDDIYEFSKNF 251
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
++++ ++LT NRI++ R V+IG V EDA +GFSGVM+RGSG WDLRK+QPY+ Y
Sbjct: 252 SLRIDEVEEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVY 311
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+++FD+PIG GDCYDRYL R+ EMR+S++II QC+N++ G + D K+ PPK
Sbjct: 312 DQVEFDVPIGSRGDCYDRYLCRVEEMRQSLRIIEQCLNKM----PPGEIKVDDAKVSPPK 367
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
RA+MK SMESLIHHFKLYTEGY VP G Y A+EAPKGEFGVYL+SDG ++PYRCKI+AP
Sbjct: 368 RAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAP 427
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHL ++ + KGH LADV AI+G+ DIVFGE+DR
Sbjct: 428 GFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEIDR 463
>gi|326475647|gb|EGD99656.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Trichophyton
tonsurans CBS 112818]
Length = 473
Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats.
Identities = 244/393 (62%), Positives = 306/393 (77%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+K R +T+NFGPQHPAAHGVLRLILEL+GE + R DPH+GLLHRGTEKLIE KT++QA+P
Sbjct: 85 RKIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYMQALP 144
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M E ++LAVEKLL IEI R + IR ++ EI RIL+HL++V + AMDV
Sbjct: 145 YFDRLDYVSMMTNEQCFSLAVEKLLNIEISERAKWIRTMFGEITRILNHLMSVLSHAMDV 204
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP LWGFEEREKLM FYER SG+R+HAAY RPGGVHQDIP L++DI W F
Sbjct: 205 GALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPLGLLDDIYQWATQFADR 264
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ +LLT NRI+K R V +G V +A +GFSGVM+RGSG WD+RKSQPY+ Y ++
Sbjct: 265 IDETEELLTDNRIWKARTVGVGVVTAAEALNYGFSGVMLRGSGVPWDIRKSQPYDAYGQV 324
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FD+P+G +GDCYDRYL RM E R+S++II QC+N++ GPV D KI PP R
Sbjct: 325 EFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNKMPA----GPVRVEDYKISPPPRIA 380
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK +ME+LIHHF L+T+GY VP GE Y+A+EAPKGE V+L+SDG +PYRCKIRAPG+A
Sbjct: 381 MKENMEALIHHFLLFTKGYTVPPGETYSAIEAPKGEMAVFLVSDGSERPYRCKIRAPGFA 440
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HL + L +GH LAD AI+G++D+VFGEVDR
Sbjct: 441 HLGCFDQLSRGHLLADAVAIIGTMDLVFGEVDR 473
>gi|259487822|tpe|CBF86800.1| TPA: hypothetical protein similar to NADH-ubiquinone oxidoreductase
49 kDa subunit, mitochondrial precursor (Eurofung)
[Aspergillus nidulans FGSC A4]
Length = 475
Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats.
Identities = 242/393 (61%), Positives = 305/393 (77%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+K R +T+NFGPQHPAAHGVLRLILE++GE + R DPH+GLLHRGTEKLIE K++ QA+P
Sbjct: 87 RKIRHYTVNFGPQHPAAHGVLRLILEINGEEIVRADPHVGLLHRGTEKLIEYKSYFQALP 146
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M E Y+LAVEKLL IEIP R + IR ++ EI RIL+HL++V + AMDV
Sbjct: 147 YFDRLDYVSMMTNEQCYSLAVEKLLNIEIPERAKYIRTMFGEITRILNHLMSVLSHAMDV 206
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP LWGFEEREKLM FYER SG+R+HAAY RPGGV QD+P L++DI W F
Sbjct: 207 GALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDLPLGLLDDIYQWATQFGDR 266
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ +LLT NRI+K R +G V DA F+GVM+RGSG WD+RKSQPY+ Y ++
Sbjct: 267 IDETEELLTDNRIWKARTQGVGVVSAADALNMSFTGVMLRGSGVPWDIRKSQPYDAYDKV 326
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FD+P+G +GDCYDRYL RM E R+S++II QC+N++ GPV D KI+PP RA
Sbjct: 327 EFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNQMPA----GPVRVEDYKIMPPPRAA 382
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK +ME+LIHHF LYT+GY VP GE Y+A+EAPKGE GV+L+SDG +PYRCKIRAPG+A
Sbjct: 383 MKENMEALIHHFLLYTKGYAVPPGETYSAIEAPKGEMGVFLVSDGSERPYRCKIRAPGFA 442
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HL + + +GH LAD AI+G++D+VFGEVDR
Sbjct: 443 HLGGFDQIARGHLLADAVAIIGTMDLVFGEVDR 475
>gi|13278096|gb|AAH03898.1| Ndufs2 protein [Mus musculus]
Length = 470
Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats.
Identities = 248/396 (62%), Positives = 314/396 (79%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ +K + T+NFGPQHPAAHGVLRL+LEL GE+V + DPHIGLLHRGTEKLIE KT+LQ
Sbjct: 79 LKEKAVTNMTLNFGPQHPAAHGVLRLVLELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQ 138
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+ M E AY++AVEKLL I+ P R Q IRVL+ EI RIL+H++ VTT A
Sbjct: 139 ALPYFDRLDYVSMMCNEQAYSIAVEKLLNIQPPPRAQWIRVLFGEITRILNHIMAVTTHA 198
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+D+GA+TP W FEEREK+ FYER SG+RMHAAY RPGGVHQD+P L++DI + +F
Sbjct: 199 LDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLLDDIYEFSKNF 258
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
++++ ++LT NRI++ R V+IG V EDA +GFSGVM+RGSG WDLRK+QPY+ Y
Sbjct: 259 SLRIDEVEEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVY 318
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+++FD+PIG GDCYDRYL R+ EMR+S++II QC+N++ G + D K+ PPK
Sbjct: 319 DQVEFDVPIGSRGDCYDRYLCRVEEMRQSLRIIEQCLNKM----PPGEIKVDDAKVSPPK 374
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
RA+MK SMESLIHHFKLYTEGY VP G Y A+EAPKGEFGVYL+SDG ++PYRCKI+AP
Sbjct: 375 RAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAP 434
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHL ++ + KGH LADV AI+G+ DIVFGE+DR
Sbjct: 435 GFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEIDR 470
>gi|85703209|ref|ZP_01034313.1| NADH dehydrogenase I, D subunit [Roseovarius sp. 217]
gi|85672137|gb|EAQ26994.1| NADH dehydrogenase I, D subunit [Roseovarius sp. 217]
Length = 406
Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats.
Identities = 287/394 (72%), Positives = 340/394 (86%), Gaps = 1/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++K R+F INFGPQHPAAHGVLRL+LELDGE+VER DPHIGLLHRGTEKL+E++T+LQ +
Sbjct: 14 EQKIRNFNINFGPQHPAAHGVLRLVLELDGELVERCDPHIGLLHRGTEKLMESRTYLQNL 73
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYVAPMNQEHA+ LA+EKL G+E+P R LIRVLY EIGRIL+HLLNVTTQAMD
Sbjct: 74 PYFDRLDYVAPMNQEHAWCLAIEKLTGVEVPRRASLIRVLYCEIGRILNHLLNVTTQAMD 133
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTPPLWGFEEREKLMVFYERA G+R+HAAYFRPGGVHQD+P EL++DI W + FP
Sbjct: 134 VGALTPPLWGFEEREKLMVFYERACGARLHAAYFRPGGVHQDLPTELIDDIETWANEFPR 193
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+DI LLT NRIFKQRN +IG + ++A WGFSGVM+RGSG AWDLR++QPYECY E
Sbjct: 194 VLDDIDGLLTENRIFKQRNADIGVISQQEALDWGFSGVMVRGSGMAWDLRRAQPYECYDE 253
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF IP+GK+GDCYDRYL RM EMR+S++II Q + +L G + + KI PPKRA
Sbjct: 254 FDFLIPVGKNGDCYDRYLCRMEEMRQSLRIIHQAIEKLRAPEGQGEIL-ARGKITPPKRA 312
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MKRSME+LIHHFKLYTEG+HVP GEVYAAVEAPKGEFGVYL++DG N+PYR KIRAPG+
Sbjct: 313 EMKRSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKGEFGVYLVADGTNRPYRAKIRAPGF 372
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQAM+ + KGHQLADV+AI+G++D+VFGE+DR
Sbjct: 373 LHLQAMDHVAKGHQLADVAAIIGTMDVVFGEIDR 406
>gi|225708390|gb|ACO10041.1| NADH dehydrogenase iron-sulfur protein 2, mitochondrial precursor
[Osmerus mordax]
Length = 462
Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats.
Identities = 249/394 (63%), Positives = 315/394 (79%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+K+ + TINFGPQHPAAHGVLRL+LEL GE V++ DPH+GLLHRGTEKLIE KT+LQA+
Sbjct: 73 EKEVSNLTINFGPQHPAAHGVLRLVLELSGESVKKCDPHVGLLHRGTEKLIEYKTYLQAL 132
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E AY+LAVEKLL I+ P+R Q IRVL+ E+ RIL+H++ +TT A+D
Sbjct: 133 PYFDRLDYVSMMCNEQAYSLAVEKLLNIQAPLRAQWIRVLFGELTRILNHIMAITTHALD 192
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA+TP W FEEREK+ FYER SG+RMHAAY RPGGVHQD+P L++DI WC +F
Sbjct: 193 IGAMTPFFWLFEEREKMFEFYERVSGARMHAAYVRPGGVHQDMPLGLMDDIYEWCKNFSI 252
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++++ ++LT NRI+K R V+IG V E+A +GFSGVM+RGSG WDLRKSQPY+ Y E
Sbjct: 253 RIDEVEEMLTNNRIWKNRTVDIGIVTAEEALNYGFSGVMLRGSGIKWDLRKSQPYDKYDE 312
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++FD+PIG +GDCYDRYL R+ EMR+S++I+ + +N++ G + D K+ PPKR
Sbjct: 313 VEFDVPIGTNGDCYDRYLCRVEEMRQSLRIMLEALNKMPA----GEIKVDDAKVAPPKRF 368
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SMESLIHHFKLYTEGY VP G Y AVEAPKGEFGVYL+SDG ++PYRCKI+APG+
Sbjct: 369 EMKMSMESLIHHFKLYTEGYQVPPGATYTAVEAPKGEFGVYLVSDGSSRPYRCKIKAPGF 428
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL ++ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 429 AHLAGLDKMAKGHMLADVVAIIGTQDIVFGEVDR 462
>gi|38638286|ref|NP_943678.1| NADH dehydrogenase subunit 7 [Chara vulgaris]
gi|32966600|gb|AAP92183.1| NADH dehydrogenase subunit 7 [Chara vulgaris]
Length = 393
Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats.
Identities = 254/394 (64%), Positives = 315/394 (79%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K+ ++ T NFGPQHPAAHGVLRL+LE++GE+VER +PHIGLLHRGTEKLIE KT+LQA+
Sbjct: 4 TKQIKNLTFNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQAL 63
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M QEHAY+LAVEKL E+P+R Q IRVL+ EI RIL+HLL +TT AMD
Sbjct: 64 PYFDRLDYVSMMAQEHAYSLAVEKLCNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMD 123
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTP LW FEEREKL+ FYER SG+RMHA+Y RPGGV QD+P L ED+ + F S
Sbjct: 124 VGALTPFLWAFEEREKLLEFYERVSGARMHASYIRPGGVAQDLPLGLSEDLFLFSQQFAS 183
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++++ ++LT NRI+KQR V+IGTV + A WGFSGVM+RGSG +WDLRK+ PY+ Y +
Sbjct: 184 RIDEVEEMLTNNRIWKQRLVDIGTVTAQQAMDWGFSGVMLRGSGVSWDLRKAAPYDVYDK 243
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++FD+P+G GDCYDRY VR+ EMR+S++II QC+N++ G + A D K+ PP R+
Sbjct: 244 VEFDVPVGTRGDCYDRYCVRIEEMRQSLRIIVQCLNQM----PSGMIKADDRKLCPPSRS 299
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
MK+SMESLIHHFKLYTEG VP Y VEAPKGEFGVYL+S+G N+PYRCKIRAPG+
Sbjct: 300 QMKQSMESLIHHFKLYTEGVSVPASSTYTCVEAPKGEFGVYLVSNGTNRPYRCKIRAPGF 359
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ ++F+ K H LADV I+G+ DIVFGEVDR
Sbjct: 360 AHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 393
>gi|154279940|ref|XP_001540783.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor [Ajellomyces capsulatus NAm1]
gi|150412726|gb|EDN08113.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor [Ajellomyces capsulatus NAm1]
Length = 479
Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats.
Identities = 245/393 (62%), Positives = 308/393 (78%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+K R +T+NFGPQHPAAHGVLRLILEL+GE + R DPH+GLLHRGTEKLIE KT++QA+P
Sbjct: 91 RKIRHYTVNFGPQHPAAHGVLRLILELNGEEIIRADPHVGLLHRGTEKLIEYKTYMQALP 150
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M E ++LAVEKLL +EIP R + IR L+ EI RIL+HL++V + AMDV
Sbjct: 151 YFDRLDYVSMMTNEQCFSLAVEKLLNVEIPDRAKWIRTLFGEITRILNHLMSVLSHAMDV 210
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP LWGFEEREKLM FYER SG+R+HAAY RPGGVHQDIP L++DI W F
Sbjct: 211 GALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPLGLLDDIYQWATQFSDR 270
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ +LLT NRI+K R +G V +A +GF+GVM+RGSG WD+RKSQPY+ Y E+
Sbjct: 271 IDETEELLTDNRIWKARTQGVGVVTAAEALNYGFTGVMLRGSGVPWDIRKSQPYDAYGEV 330
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FD+P+G +GDCYDRYL RM E R+S++II QC+N++ GPV D KI PP RA
Sbjct: 331 EFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNKMPA----GPVRVEDYKISPPPRAA 386
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK +ME+LIHHF L+T+GY VP GE Y+A+EAPKGE GVY++SDG +PYRCKIRAPG+A
Sbjct: 387 MKENMEALIHHFLLFTKGYAVPPGETYSAIEAPKGEMGVYVVSDGSERPYRCKIRAPGFA 446
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HL + + +GH LAD AI+G++D+VFGEVDR
Sbjct: 447 HLSCFDQISRGHLLADAVAIIGTMDLVFGEVDR 479
>gi|240279627|gb|EER43132.1| NADH dehydrogenase I [Ajellomyces capsulatus H143]
gi|325092756|gb|EGC46066.1| NADH dehydrogenase I [Ajellomyces capsulatus H88]
Length = 479
Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats.
Identities = 245/393 (62%), Positives = 308/393 (78%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+K R +T+NFGPQHPAAHGVLRLILEL+GE + R DPH+GLLHRGTEKLIE KT++QA+P
Sbjct: 91 RKIRHYTVNFGPQHPAAHGVLRLILELNGEEIIRADPHVGLLHRGTEKLIEYKTYMQALP 150
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M E ++LAVEKLL +EIP R + IR L+ EI RIL+HL++V + AMDV
Sbjct: 151 YFDRLDYVSMMTNEQCFSLAVEKLLNVEIPDRAKWIRTLFGEITRILNHLMSVLSHAMDV 210
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP LWGFEEREKLM FYER SG+R+HAAY RPGGVHQDIP L++DI W F
Sbjct: 211 GALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPLGLLDDIYQWATQFSDR 270
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ +LLT NRI+K R +G V +A +GF+GVM+RGSG WD+RKSQPY+ Y E+
Sbjct: 271 IDETEELLTDNRIWKARTQGVGVVTAAEALNYGFTGVMLRGSGVPWDIRKSQPYDAYGEV 330
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FD+P+G +GDCYDRYL RM E R+S++II QC+N++ GPV D KI PP RA
Sbjct: 331 EFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNKMPA----GPVRVEDYKISPPPRAA 386
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK +ME+LIHHF L+T+GY VP GE Y+A+EAPKGE GVY++SDG +PYRCKIRAPG+A
Sbjct: 387 MKENMEALIHHFLLFTKGYAVPPGETYSAIEAPKGEMGVYVVSDGSERPYRCKIRAPGFA 446
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HL + + +GH LAD AI+G++D+VFGEVDR
Sbjct: 447 HLSCFDQISRGHLLADAVAIIGTMDLVFGEVDR 479
>gi|57239170|ref|YP_180306.1| NADH dehydrogenase subunit D [Ehrlichia ruminantium str.
Welgevonden]
gi|58579126|ref|YP_197338.1| NADH dehydrogenase subunit D [Ehrlichia ruminantium str.
Welgevonden]
gi|81672806|sp|Q5HB88|NUOD_EHRRW RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|57161249|emb|CAH58168.1| NADH-quinone oxidoreductase chain D [Ehrlichia ruminantium str.
Welgevonden]
gi|58417752|emb|CAI26956.1| NADH-quinone oxidoreductase chain D [Ehrlichia ruminantium str.
Welgevonden]
Length = 393
Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats.
Identities = 261/395 (66%), Positives = 326/395 (82%), Gaps = 4/395 (1%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
D K T+NFGPQHPAAHGV+RL+LE+ GE++ER+DPHIGLLHRGTEKLIE KT+LQA
Sbjct: 3 DHVKITPMTLNFGPQHPAAHGVMRLVLEMGGEVIERIDPHIGLLHRGTEKLIEYKTYLQA 62
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+PYFDRLDYV+PM QEHAY+L VEKLL E+PIR + +RV++ E+ RIL+HLLN+++QA+
Sbjct: 63 LPYFDRLDYVSPMAQEHAYSLCVEKLLKCEVPIRAKYLRVIFCELTRILNHLLNISSQAL 122
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D+GA+TP LW FEEREK++ FYERASG+R H+AY RPGGV DIP +L+ DI + ++FP
Sbjct: 123 DIGAMTPLLWMFEEREKILNFYERASGARFHSAYIRPGGVAADIPEDLIHDIFQFVNTFP 182
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
++D+ LLT NRI+KQRNV+IG V + A WGFSG M+R G WDLRKSQPYE Y
Sbjct: 183 KFMDDVDSLLTENRIWKQRNVDIGVVSKKQALNWGFSGPMLRACGIPWDLRKSQPYEIYD 242
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
EL+F IPIG+ GDCYDRYLVRM E+RES++++ QC+NR+ GPV D KI PPKR
Sbjct: 243 ELEFKIPIGEKGDCYDRYLVRMAEIRESIRLVEQCLNRIPD----GPVKTDDRKIAPPKR 298
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
++MK+SME+LIHHFKLY+EGY VP GE Y AVEAPKGEFGVY++SDG NKPYRC+IRAPG
Sbjct: 299 SEMKKSMEALIHHFKLYSEGYSVPAGETYMAVEAPKGEFGVYIVSDGTNKPYRCRIRAPG 358
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AHLQA++ + KGH LAD++AI+GSLDIVFGE+DR
Sbjct: 359 FAHLQAIDMMAKGHMLADLTAIIGSLDIVFGEIDR 393
>gi|319407264|emb|CBI80903.1| NADH dehydrogenase I, D subunit [Bartonella sp. 1-1C]
Length = 396
Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats.
Identities = 298/396 (75%), Positives = 347/396 (87%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + R+F INFGPQHPAAHGVLR++LELDGE+VERVDPHIGLLHRGTEKL+ETKT+LQ
Sbjct: 1 MAEVNVRNFNINFGPQHPAAHGVLRMVLELDGEVVERVDPHIGLLHRGTEKLMETKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A PY DRLDYVAPMNQEHA+ LA+EKLLG+E+P RGQLIRVL+SEIGRIL+HLLNVTTQA
Sbjct: 61 AGPYLDRLDYVAPMNQEHAFVLAIEKLLGVEVPKRGQLIRVLFSEIGRILNHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFE+REKLM+FYERA G+R+HA YFRPGGVHQD+P L+EDIG + D F
Sbjct: 121 MDVGALTPPLWGFEQREKLMIFYERACGARLHANYFRPGGVHQDLPESLIEDIGNFIDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
AL+ + L+T NRIFKQRNV+IG V + +AW FSGVMIRG+G WDLRKSQPYECY
Sbjct: 181 LIALDKLDALITPNRIFKQRNVDIGVVNINEAWARAFSGVMIRGAGVPWDLRKSQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E++FDIP+GK+ DCYDRYL+RM EMR+S KI+RQCV+RLL K GPVS+ D K+VPPK
Sbjct: 241 DEMEFDIPVGKNSDCYDRYLIRMEEMRQSTKIMRQCVDRLLSSEKNGPVSSLDRKVVPPK 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R++MK SME+LIHHFKLYTEG+H P GEVY AVEAPKGEFGVYL+SDG NKPYR K+RAP
Sbjct: 301 RSEMKSSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKGEFGVYLVSDGTNKPYRIKLRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHLQAM+FL +GH LAD +AILGS+DIVFGE+DR
Sbjct: 361 GFAHLQAMDFLTRGHMLADATAILGSIDIVFGEIDR 396
>gi|163868370|ref|YP_001609579.1| NADH dehydrogenase subunit D [Bartonella tribocorum CIP 105476]
gi|218534391|sp|A9IUP7|NUOD_BART1 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|161018026|emb|CAK01584.1| NADH dehydrogenase I, D subunit [Bartonella tribocorum CIP 105476]
Length = 396
Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats.
Identities = 300/396 (75%), Positives = 346/396 (87%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + R+F INFGPQHPAAHGVLR++LELDGE+VERVDPHIGLLHRGTEKL+ETKT+LQ
Sbjct: 1 MAEVNVRNFNINFGPQHPAAHGVLRMVLELDGEVVERVDPHIGLLHRGTEKLMETKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A PY DRLDYVAPMNQEHA+ LA+EKLL I++P RGQLIRVL+SEIGRIL+HLLNVTTQA
Sbjct: 61 AGPYLDRLDYVAPMNQEHAFVLAIEKLLNIKVPKRGQLIRVLFSEIGRILNHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFE+RE+LM+FYERA G+R+HA YFRPGGVHQD+P LVEDIG + D F
Sbjct: 121 MDVGALTPPLWGFEQRERLMIFYERACGARLHANYFRPGGVHQDLPESLVEDIGNFIDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+L + L+T NRIFKQRNV+IG V +++AW FSGVMIRG+G WDLRKSQPYECY
Sbjct: 181 LVSLEKLDALVTPNRIFKQRNVDIGIVSIDEAWARSFSGVMIRGAGVPWDLRKSQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E++FDIPIGK+ DCYDRYL+RM EMR+S KI+RQCV RLLG K GPVS+ D KIVPPK
Sbjct: 241 DEMEFDIPIGKNSDCYDRYLIRMEEMRQSAKIMRQCVERLLGAEKNGPVSSLDRKIVPPK 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R++MK SME+LIHHFKLYTEG+H P GEVY AVEAPKGEFGVYL+SDG NKPYR K+RAP
Sbjct: 301 RSEMKSSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKGEFGVYLVSDGTNKPYRVKLRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHLQAM+FL +GH LAD +AILGS+DIVFGEVDR
Sbjct: 361 GFAHLQAMDFLTRGHMLADATAILGSIDIVFGEVDR 396
>gi|325292636|ref|YP_004278500.1| NADH dehydrogenase I chain D [Agrobacterium sp. H13-3]
gi|325060489|gb|ADY64180.1| NADH dehydrogenase I chain D [Agrobacterium sp. H13-3]
Length = 396
Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats.
Identities = 325/396 (82%), Positives = 372/396 (93%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + R+FTINFGP+HP+AHGVLRL+LELDGEIVERVDPHIGLLHRGTEKLIETKT+LQ
Sbjct: 1 MTEHNVRNFTINFGPEHPSAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIETKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVPYFDRLDYVAPMNQEHA+ALAVEKLLG+EIP+RGQLIRVLYSEIGRILSH++NVTTQA
Sbjct: 61 AVPYFDRLDYVAPMNQEHAFALAVEKLLGLEIPMRGQLIRVLYSEIGRILSHIMNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGA+TPP+WGFEEREKLMVFYERA G+RMH+AY RPGGVHQD+PPELVEDIG WCD F
Sbjct: 121 MDVGAMTPPVWGFEEREKLMVFYERACGARMHSAYVRPGGVHQDLPPELVEDIGKWCDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ L++I LLT NRI+KQRNV+IG V LEDA+ WGF+GVM+RGSGAAWDLR++QPYECY
Sbjct: 181 ITVLDNIEGLLTDNRIYKQRNVDIGVVSLEDAFAWGFTGVMVRGSGAAWDLRRAQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
S+L+FDIP+GK+GDCYDRYL+RM EMRESVKI++QCV+ L GK+++GPVS+ D K+VPPK
Sbjct: 241 SDLEFDIPVGKNGDCYDRYLIRMQEMRESVKIMKQCVDLLSGKHRIGPVSSLDGKVVPPK 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MKRSME+LIHHFKLYTEGYHVP GEVYAAVEAPKGEFGVY+++DG NKPYRCKIRAP
Sbjct: 301 RGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYVVADGSNKPYRCKIRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GYAHLQAM+FLCKGHQLADV+A+LGSLDIVFGEVDR
Sbjct: 361 GYAHLQAMDFLCKGHQLADVTAVLGSLDIVFGEVDR 396
>gi|225543453|ref|NP_001018481.2| NADH dehydrogenase (ubiquinone) Fe-S protein 2 [Danio rerio]
Length = 464
Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats.
Identities = 248/394 (62%), Positives = 313/394 (79%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+K + TINFGPQHPAAHGVLRL++EL GE V++ DPHIGLLHRGTEKLIE KT+LQA+
Sbjct: 75 QKDLSNLTINFGPQHPAAHGVLRLVMELSGESVKKCDPHIGLLHRGTEKLIEYKTYLQAL 134
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E AY+LAVEKLL I+ P R Q IRVL+ E+ RI++H++ +TT A+D
Sbjct: 135 PYFDRLDYVSMMCNEQAYSLAVEKLLNIQAPPRAQWIRVLFGEMTRIMNHIMGITTHALD 194
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA+TP W FEEREKL FYER SG+RMHAAY RPGGVHQD+P L++DI WC +F
Sbjct: 195 IGAMTPFFWMFEEREKLFEFYERVSGARMHAAYVRPGGVHQDMPLGLMDDIYEWCKNFSI 254
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++++ ++LT NRI+K R V IG + E+A +GFSGVM+RGSG WDLRKSQPY+ Y E
Sbjct: 255 RIDEVEEMLTNNRIWKNRTVGIGVIGAEEALNYGFSGVMLRGSGIKWDLRKSQPYDKYDE 314
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++FD+ IG +GDCYDRYL R+ EMR+S++I+ QC+N++ G + D KI PPKR+
Sbjct: 315 VEFDMAIGTNGDCYDRYLCRVEEMRQSLRIMHQCLNKM----PPGEIKVDDAKIAPPKRS 370
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SMESLIHHFKLYTEGY VP G Y A+EAPKGEFGVYL+SDG ++PYRCKI+APG+
Sbjct: 371 EMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGF 430
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL ++ + +GH LADV AI+G+ DIVFGEVDR
Sbjct: 431 AHLAGLDRMSQGHMLADVVAIIGTQDIVFGEVDR 464
>gi|114707371|ref|ZP_01440268.1| NADH dehydrogenase subunit D [Fulvimarina pelagi HTCC2506]
gi|114537252|gb|EAU40379.1| NADH dehydrogenase subunit D [Fulvimarina pelagi HTCC2506]
Length = 396
Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats.
Identities = 307/396 (77%), Positives = 357/396 (90%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + R+F INFGPQHPAAHGVLRL+LELDGEIVERVDPH+GLLHRGTEKLIE KT+LQ
Sbjct: 1 MAEIDVRNFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHVGLLHRGTEKLIEHKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+PMNQEHA+ LA+E+L +++P RGQLIRVLY EIGRILSHLLNVTTQA
Sbjct: 61 AIPYFDRLDYVSPMNQEHAFCLAIERLADVDVPKRGQLIRVLYCEIGRILSHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLMVFYERASG+R+H++YFRPGGVHQDI +L++DIG WCD F
Sbjct: 121 MDVGALTPPLWGFEEREKLMVFYERASGARLHSSYFRPGGVHQDIDQKLIDDIGEWCDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+D+ LLT NRIFKQRNV+IG V L+DAW GFSGVM+RGSGAAWDLRKSQPYECY
Sbjct: 181 LKVCDDLEGLLTDNRIFKQRNVDIGVVNLDDAWAMGFSGVMVRGSGAAWDLRKSQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E++FDIP+GK+GDCYDRYL+RM+EMRE+V+I++QC+ RL G+ K GPVSA K+VPPK
Sbjct: 241 DEMEFDIPVGKNGDCYDRYLIRMVEMREAVRIMKQCIERLSGEEKTGPVSAPMGKVVPPK 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MKRSME+LIHHFKLYTEG+H+P GEVYAAVEAPKGEFGVYL++DG NKP+RCKI+AP
Sbjct: 301 RPEMKRSMEALIHHFKLYTEGFHLPEGEVYAAVEAPKGEFGVYLVADGTNKPHRCKIKAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHLQAM+ +CKGH LADVSAILG+LDIVFGEVDR
Sbjct: 361 GFAHLQAMDVMCKGHLLADVSAILGTLDIVFGEVDR 396
>gi|321268726|gb|ADW79175.1| NADH dehydrogenase subunit 7 [Cyanophora paradoxa]
Length = 399
Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats.
Identities = 259/390 (66%), Positives = 314/390 (80%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
++FT+NFGPQHPAAHGVLRL+LEL+GEIV++ DPHIGLLHRGTEKLIE K + QA+PYFD
Sbjct: 14 KNFTLNFGPQHPAAHGVLRLVLELNGEIVKKADPHIGLLHRGTEKLIEYKNYNQALPYFD 73
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYV+ M QEHAY+LAVEKLL +P+R + IRV++SEI RIL+HLL VT AMDVGAL
Sbjct: 74 RLDYVSMMAQEHAYSLAVEKLLKCSVPLRAKWIRVIFSEITRILNHLLAVTCHAMDVGAL 133
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP LWGFEEREKLM FYER SG+RMHAAY RPGGV QD+P L DI + F + +N+
Sbjct: 134 TPLLWGFEEREKLMEFYERVSGARMHAAYIRPGGVSQDLPNGLTNDIYEFVIQFENKINE 193
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ +LLT NRI+KQR V+IG V ++A WGFSGVM+RGSG AWDLRK++ YE Y LDF+
Sbjct: 194 LEELLTNNRIWKQRLVDIGVVTAKEAIDWGFSGVMLRGSGVAWDLRKNEAYETYDNLDFE 253
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+P+G GDCYDRYL+R+ EMR+S II+Q +N+L GP+ D KI PP R +MK+
Sbjct: 254 VPVGIRGDCYDRYLIRIEEMRQSCYIIQQSLNKL----SSGPIKVDDNKISPPSRTEMKQ 309
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
SMESLIHHFKLYTEGY VP GE Y+ VEAPKGEFGVYL+S+G NKPYRCKI+APG+AHLQ
Sbjct: 310 SMESLIHHFKLYTEGYTVPKGETYSFVEAPKGEFGVYLVSNGTNKPYRCKIKAPGFAHLQ 369
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ + K H LADV I+G+ DIVFGE+DR
Sbjct: 370 GLDMMSKNHMLADVVTIIGTQDIVFGEIDR 399
>gi|330921705|ref|XP_003299535.1| hypothetical protein PTT_10543 [Pyrenophora teres f. teres 0-1]
gi|311326760|gb|EFQ92374.1| hypothetical protein PTT_10543 [Pyrenophora teres f. teres 0-1]
Length = 475
Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats.
Identities = 243/396 (61%), Positives = 309/396 (78%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+D +K R +T+NFGPQHPAAHGVLRLILEL+GE + R DPH+GLLHRGTEKLIE +T+LQ
Sbjct: 84 VDTRKIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYRTYLQ 143
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+ M E ++LAVEKLL I+IPIR + IR L+ EI RIL+HL++V + A
Sbjct: 144 ALPYFDRLDYVSMMTNEQCFSLAVEKLLNIDIPIRAKYIRTLFGEITRILNHLMSVLSHA 203
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTP LWGFEEREKLM FYER SG+R+HAAY RPGGV QD+P L++DI W F
Sbjct: 204 MDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDLPIGLLDDIYQWATQF 263
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+++ ++LT NRI+ R +G V DA + FSGVM+RGSG WD+RKSQPY+ Y
Sbjct: 264 GDRIDETEEMLTDNRIWIGRTKGVGVVSAADAINYSFSGVMLRGSGVPWDIRKSQPYDAY 323
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+++FD+P+G +GDCYDRYL RM E R+S++II QC+N++ GPV D KI PP
Sbjct: 324 DQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNQMPA----GPVKVEDYKIAPPP 379
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
RA MK +ME+LIHHF L+++GY VP GE Y+A+EAPKGE GV+L+SDG +PYRCKIRAP
Sbjct: 380 RAAMKENMEALIHHFLLFSKGYTVPPGETYSAIEAPKGEMGVFLVSDGSERPYRCKIRAP 439
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHL M+ + +GH LAD AI+G++D+VFGEVDR
Sbjct: 440 GFAHLACMDQISRGHLLADAVAIIGTMDLVFGEVDR 475
>gi|226287321|gb|EEH42834.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Paracoccidioides
brasiliensis Pb18]
Length = 479
Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats.
Identities = 245/395 (62%), Positives = 308/395 (77%), Gaps = 4/395 (1%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ +K R +T+NFGPQHPAAHGVLRLILEL+GE + R DPH+GLLHRGTEKLIE KT++QA
Sbjct: 89 NGRKIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYMQA 148
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+PYFDRLDYV+ M E ++LAVEKLL IEIP R + IR ++ EI RIL+HL++V + AM
Sbjct: 149 LPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKWIRTMFGEITRILNHLMSVLSHAM 208
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
DVGALTP LWGFEEREKLM FYER SG+R+HAAY RPGGVHQDIP L++DI W F
Sbjct: 209 DVGALTPFLWGFEEREKLMEFYERVSGARLHAAYIRPGGVHQDIPLGLLDDIYQWATQFG 268
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ +LLT NRI+K R IG V +A + FSGVM+RGSG WD+RKSQPY+ Y
Sbjct: 269 DRIDETEELLTENRIWKARTQGIGVVSAAEALNYSFSGVMLRGSGVPWDVRKSQPYDAYD 328
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+++FD+P+G +GDCYDRYL RM E R+S++II QC+N++ GPV D KI PP R
Sbjct: 329 QVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNKMPA----GPVRVEDYKISPPPR 384
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
A MK +ME+LIHHF L+T+GY VP GE Y+A+EAPKGE GV+L+SDG +PYRCKIRAPG
Sbjct: 385 AAMKENMEALIHHFLLFTKGYAVPPGETYSAIEAPKGEMGVFLVSDGSERPYRCKIRAPG 444
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AHL + + +GH LAD AI+G++D+VFGEVDR
Sbjct: 445 FAHLSCFDQISRGHLLADAVAIIGTMDLVFGEVDR 479
>gi|189183821|ref|YP_001937606.1| NADH dehydrogenase subunit D [Orientia tsutsugamushi str. Ikeda]
gi|218534441|sp|B3CSH1|NUOD_ORITI RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|189180592|dbj|BAG40372.1| NADH dehydrogenase I chain D [Orientia tsutsugamushi str. Ikeda]
Length = 396
Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats.
Identities = 261/393 (66%), Positives = 324/393 (82%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K S+ F +N GPQHPA HGVLRLILE+DGEIVER DPHIGLLHRGTEKLIE KT+LQA+P
Sbjct: 8 KHSKKFKLNLGPQHPATHGVLRLILEMDGEIVERADPHIGLLHRGTEKLIEYKTYLQAIP 67
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+PM QEHA+ALA+E LL E+P+R Q IRV++SE+ RIL+H LN+ TQA+DV
Sbjct: 68 YFDRLDYVSPMCQEHAFALAIEHLLKCEVPLRAQYIRVMFSELTRILNHTLNIATQALDV 127
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP LW FEEREK+M FYER SGSR+HA YFRPGGV QD+P L+E+I +C+ FP
Sbjct: 128 GATTPLLWMFEEREKIMEFYERVSGSRLHANYFRPGGVSQDLPEGLIENIADFCEQFPCK 187
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ D+ LLT NRI+KQR V+IG V + A WGFSGVM+RGSG AWDLRKSQPY+ Y+ L
Sbjct: 188 IADLETLLTDNRIWKQRTVDIGIVSKQQAMDWGFSGVMLRGSGIAWDLRKSQPYDQYANL 247
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DFD+ IGK+GDCYDRYL+R+ EM +S+KII+QC+ ++ G + DP I PPKR++
Sbjct: 248 DFDVAIGKNGDCYDRYLIRIEEMYQSIKIIKQCIQKMPA----GEIRTQDPSISPPKRSE 303
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+K+SME+LI+HFKLY+EGY+VP GEVYAAVEAPKGEFGVYL SDG N+PYRC+I+APG+A
Sbjct: 304 IKKSMEALINHFKLYSEGYNVPAGEVYAAVEAPKGEFGVYLYSDGTNRPYRCRIKAPGFA 363
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ ++F+ +GH L+D+ I+ +LDIVFGE+DR
Sbjct: 364 HLQGLDFMARGHSLSDIITIIATLDIVFGEIDR 396
>gi|319404256|emb|CBI77849.1| NADH dehydrogenase I, D subunit [Bartonella rochalimae ATCC
BAA-1498]
Length = 396
Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats.
Identities = 298/396 (75%), Positives = 347/396 (87%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + R+F INFGPQHPAAHGVLR++LELDGE+VERVDPHIGLLHRGTEKL+ETKT+LQ
Sbjct: 1 MAEVNVRNFNINFGPQHPAAHGVLRMVLELDGEVVERVDPHIGLLHRGTEKLMETKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A PY DRLDYVAPMNQEHA+ LA+EKLLG+E+P RGQLIRVL+SEIGRIL+HLLNVTTQA
Sbjct: 61 AGPYLDRLDYVAPMNQEHAFVLAIEKLLGVEVPKRGQLIRVLFSEIGRILNHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFE+REKLM+FYERA G+R+HA YFRPGGVHQD+P L+EDIG + D F
Sbjct: 121 MDVGALTPPLWGFEQREKLMIFYERACGARLHANYFRPGGVHQDLPETLIEDIGNFIDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
AL+ + L+T NRIFKQRNV+IG V + +AW FSGVMIRG+G WDLRKSQPYECY
Sbjct: 181 LIALDKLDALITPNRIFKQRNVDIGVVNINEAWARAFSGVMIRGAGVPWDLRKSQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E++FDIP+GK+ DCYDRYL+RM EMR+S KI+RQCV+RLL K GPVS+ D K+VPPK
Sbjct: 241 DEMEFDIPVGKNSDCYDRYLIRMEEMRQSTKIMRQCVDRLLSSEKNGPVSSLDRKVVPPK 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R++MK SME+LIHHFKLYTEG+H P GEVY AVEAPKGEFGVYL+SDG NKPYR K+RAP
Sbjct: 301 RSEMKSSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKGEFGVYLVSDGTNKPYRIKLRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHLQAM+FL +GH LAD +AILGS+DIVFGE+DR
Sbjct: 361 GFAHLQAMDFLTRGHMLADATAILGSIDIVFGEIDR 396
>gi|67523917|ref|XP_660018.1| hypothetical protein AN2414.2 [Aspergillus nidulans FGSC A4]
gi|40745369|gb|EAA64525.1| hypothetical protein AN2414.2 [Aspergillus nidulans FGSC A4]
Length = 468
Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats.
Identities = 242/393 (61%), Positives = 305/393 (77%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+K R +T+NFGPQHPAAHGVLRLILE++GE + R DPH+GLLHRGTEKLIE K++ QA+P
Sbjct: 80 RKIRHYTVNFGPQHPAAHGVLRLILEINGEEIVRADPHVGLLHRGTEKLIEYKSYFQALP 139
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M E Y+LAVEKLL IEIP R + IR ++ EI RIL+HL++V + AMDV
Sbjct: 140 YFDRLDYVSMMTNEQCYSLAVEKLLNIEIPERAKYIRTMFGEITRILNHLMSVLSHAMDV 199
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP LWGFEEREKLM FYER SG+R+HAAY RPGGV QD+P L++DI W F
Sbjct: 200 GALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDLPLGLLDDIYQWATQFGDR 259
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ +LLT NRI+K R +G V DA F+GVM+RGSG WD+RKSQPY+ Y ++
Sbjct: 260 IDETEELLTDNRIWKARTQGVGVVSAADALNMSFTGVMLRGSGVPWDIRKSQPYDAYDKV 319
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FD+P+G +GDCYDRYL RM E R+S++II QC+N++ GPV D KI+PP RA
Sbjct: 320 EFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNQMPA----GPVRVEDYKIMPPPRAA 375
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK +ME+LIHHF LYT+GY VP GE Y+A+EAPKGE GV+L+SDG +PYRCKIRAPG+A
Sbjct: 376 MKENMEALIHHFLLYTKGYAVPPGETYSAIEAPKGEMGVFLVSDGSERPYRCKIRAPGFA 435
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HL + + +GH LAD AI+G++D+VFGEVDR
Sbjct: 436 HLGGFDQIARGHLLADAVAIIGTMDLVFGEVDR 468
>gi|195450785|ref|XP_002072632.1| GK13585 [Drosophila willistoni]
gi|194168717|gb|EDW83618.1| GK13585 [Drosophila willistoni]
Length = 469
Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats.
Identities = 245/394 (62%), Positives = 308/394 (78%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+K R+ T+NFGPQHPAAHGVLRL+LELDGE V R DPHIGLLHRGTEKLIE KT+ QA+
Sbjct: 80 EKSVRNLTLNFGPQHPAAHGVLRLVLELDGETVMRADPHIGLLHRGTEKLIEYKTYTQAL 139
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E Y+LAVEKLL I++P+R + IR L++EI RIL+H++ V T A+D
Sbjct: 140 PYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRILNHIMAVGTHALD 199
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTP W FEEREK+M FYER SG+RMHAAY RPGGV D+P L++DI + F
Sbjct: 200 VGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFASKFAE 259
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+++ D+L+ NRI+ QR +IG V E+A +GFSGVM+RGSG WDLRK QPY+ Y
Sbjct: 260 RLDEVEDVLSTNRIWVQRTEDIGIVTAEEALNYGFSGVMLRGSGIKWDLRKQQPYDAYHL 319
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+DFD+PIG GDCYDRYL R+ EMR+S++II QC+N++ G + D K+ PP RA
Sbjct: 320 VDFDVPIGTKGDCYDRYLCRVEEMRQSLRIIDQCLNQMPA----GEIKTDDAKVTPPSRA 375
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SME+LIHHFKL+T+GY VP G Y A+EAPKGEFGVYL++DG ++PYRCKI+APG+
Sbjct: 376 EMKTSMEALIHHFKLFTQGYQVPPGATYTAIEAPKGEFGVYLVADGSSRPYRCKIKAPGF 435
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL A+E + K H LADV AI+G+LD+VFGE+DR
Sbjct: 436 AHLAALEKIGKQHMLADVVAIIGTLDVVFGEIDR 469
>gi|110225684|ref|YP_665689.1| NADH dehydrogenase subunit 7 [Mesostigma viride]
gi|17222555|gb|AAL36728.1|AF353999_8 NADH dehydrogenase subunit 7 [Mesostigma viride]
Length = 399
Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats.
Identities = 261/394 (66%), Positives = 319/394 (80%), Gaps = 5/394 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
KK ++F +NFGPQHPAAHGVLRL+LE++GE+VER DPHIGLLHRGTEKLIE KT+LQA+P
Sbjct: 10 KKVKNFQLNFGPQHPAAHGVLRLVLEMNGEVVERADPHIGLLHRGTEKLIEYKTYLQALP 69
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIE-IPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
YFDRLDYV+ M QEHAY+LAVEKLLGI +P+R Q IRVL+SEI R+L+HLL +TT AMD
Sbjct: 70 YFDRLDYVSMMAQEHAYSLAVEKLLGIRSVPLRAQYIRVLFSEITRLLNHLLALTTHAMD 129
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTP LW FEEREKL+ FYER SG+RMHAAY RPGGV QDIP L +DI + F S
Sbjct: 130 VGALTPFLWAFEEREKLLEFYERVSGARMHAAYIRPGGVAQDIPQGLCDDIYQFTQQFAS 189
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++++ ++LT NRI+K+R ++IG V E A WGF+GVM+RGSG WDLRK++PYE Y +
Sbjct: 190 RIDEMEEMLTNNRIWKERLIDIGVVTAEKAMQWGFTGVMLRGSGIPWDLRKAEPYEVYDQ 249
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
L+FDIP+G GDCYDRYLVR+ EMR+S++II QC+N++ +G V D KI+PP R
Sbjct: 250 LEFDIPVGTKGDCYDRYLVRVEEMRQSLRIIVQCLNKM----PLGIVQIDDRKIMPPSRF 305
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
MK SMESLIHHFK +TEG+ VP GE Y A+EAPKGEFGVYL+SDG N+PYRCKIRAPG+
Sbjct: 306 SMKHSMESLIHHFKNFTEGFSVPAGETYTAIEAPKGEFGVYLVSDGTNRPYRCKIRAPGF 365
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ ++ + K H LADV I+G+ DIVFGEVDR
Sbjct: 366 VHLQGLDMMSKKHMLADVVTIIGTQDIVFGEVDR 399
>gi|158423294|ref|YP_001524586.1| NADH-quinone dehydrogenase chain D 1 protein [Azorhizobium
caulinodans ORS 571]
gi|218534385|sp|A8I3Z3|NUOD_AZOC5 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|158330183|dbj|BAF87668.1| NADH-quinone dehydrogenase chain D 1 protein [Azorhizobium
caulinodans ORS 571]
Length = 402
Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats.
Identities = 316/390 (81%), Positives = 356/390 (91%), Gaps = 2/390 (0%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
R+F INFGPQHPAAHGVLR++LEL+GE+VERVDPHIGLLHRGTEKLIE KT+LQAVPYFD
Sbjct: 15 RNFQINFGPQHPAAHGVLRMVLELNGEVVERVDPHIGLLHRGTEKLIEAKTYLQAVPYFD 74
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDY APMNQEHA+ LAVE+L GIE+P RGQLIRVLYSEIGR+LSHLLNVTT AMDVGAL
Sbjct: 75 RLDYCAPMNQEHAFCLAVERLAGIEVPKRGQLIRVLYSEIGRLLSHLLNVTTFAMDVGAL 134
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TPPLWGFE REKLM+FYERASGSRMHAAYFRPGGVHQD+P +LVEDIG +C +FPS L+D
Sbjct: 135 TPPLWGFEAREKLMMFYERASGSRMHAAYFRPGGVHQDLPQKLVEDIGEFCRTFPSLLDD 194
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ L+TGNRIFKQR V+IG V LEDA WGFSGVM+RGSGA WDLR++QPYECYSELDFD
Sbjct: 195 LDALVTGNRIFKQRTVDIGVVTLEDALAWGFSGVMVRGSGAPWDLRRAQPYECYSELDFD 254
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
IPIGKHGDCYDRY+VRM EMR+S KI+ QCV+RLL + GPV+++D K+ PPKR +MKR
Sbjct: 255 IPIGKHGDCYDRYVVRMEEMRQSNKIMLQCVDRLLK--EAGPVASTDRKVSPPKRGEMKR 312
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
SME+LIHHFKLYTEG+HVP GEVYAAVEAPKGEFGVYL+ DG NKPYRCKIRAPG+AHLQ
Sbjct: 313 SMEALIHHFKLYTEGFHVPEGEVYAAVEAPKGEFGVYLVGDGTNKPYRCKIRAPGFAHLQ 372
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+M+FLC+GH LADVSA+LGSLDIVFGEVDR
Sbjct: 373 SMDFLCRGHMLADVSAVLGSLDIVFGEVDR 402
>gi|189203211|ref|XP_001937941.1| NADH dehydrogenase iron-sulfur protein 2, mitochondrial precursor
[Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187985040|gb|EDU50528.1| NADH dehydrogenase iron-sulfur protein 2, mitochondrial precursor
[Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 475
Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats.
Identities = 242/396 (61%), Positives = 309/396 (78%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+D +K R +T+NFGPQHPAAHGVLRLILEL+GE + R DPH+GLLHRGTEKLIE +T+LQ
Sbjct: 84 VDTRKIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYRTYLQ 143
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+ M E ++LAVEKLL I+IPIR + IR ++ EI RIL+HL++V + A
Sbjct: 144 ALPYFDRLDYVSMMTNEQCFSLAVEKLLNIDIPIRAKYIRTMFGEITRILNHLMSVLSHA 203
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTP LWGFEEREKLM FYER SG+R+HAAY RPGGV QD+P L++DI W F
Sbjct: 204 MDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDLPIGLLDDIYQWATQF 263
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+++ ++LT NRI+ R +G V DA + FSGVM+RGSG WD+RKSQPY+ Y
Sbjct: 264 GDRIDETEEMLTDNRIWIGRTKGVGVVSAADAINYSFSGVMLRGSGVPWDIRKSQPYDAY 323
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+++FD+P+G +GDCYDRYL RM E R+S++II QC+N++ GPV D KI PP
Sbjct: 324 DQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNQMPA----GPVKVEDYKIAPPP 379
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
RA MK +ME+LIHHF L+++GY VP GE Y+A+EAPKGE GV+L+SDG +PYRCKIRAP
Sbjct: 380 RAAMKENMEALIHHFLLFSKGYTVPPGETYSAIEAPKGEMGVFLVSDGSERPYRCKIRAP 439
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHL M+ + +GH LAD AI+G++D+VFGEVDR
Sbjct: 440 GFAHLACMDQISRGHLLADAVAIIGTMDLVFGEVDR 475
>gi|240850586|ref|YP_002971986.1| NADH dehydrogenase I subunit D [Bartonella grahamii as4aup]
gi|240267709|gb|ACS51297.1| NADH dehydrogenase I subunit D [Bartonella grahamii as4aup]
Length = 396
Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats.
Identities = 300/396 (75%), Positives = 346/396 (87%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + R+F INFGPQHPAAHGVLR++LELDGE+VERVDPHIGLLHRGTEKL+ETKT+LQ
Sbjct: 1 MAEVNVRNFNINFGPQHPAAHGVLRMVLELDGEVVERVDPHIGLLHRGTEKLMETKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A PY DRLDYVAPMNQEHA+ LA+EKLL I++P RGQLIRVL+SEIGRIL+HLLNVTTQA
Sbjct: 61 AGPYLDRLDYVAPMNQEHAFVLAIEKLLDIKVPKRGQLIRVLFSEIGRILNHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFE+RE+LM+FYERA G+R+HA YFRPGGVHQD+P LVEDIG + D F
Sbjct: 121 MDVGALTPPLWGFEQRERLMIFYERACGARLHANYFRPGGVHQDLPESLVEDIGNFIDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
AL + L+T NRIFKQRNV+IG V +++AW GFSGVMIRG+G WDLRKSQPYECY
Sbjct: 181 LVALGKLDALVTPNRIFKQRNVDIGVVSIDEAWARGFSGVMIRGAGVPWDLRKSQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E++FDIP+GK+ DCYDRYL+RM EMR+S KI+RQCV RLL K GPVS+ D KIVPPK
Sbjct: 241 DEMEFDIPVGKNSDCYDRYLIRMEEMRQSAKIMRQCVERLLSTEKNGPVSSLDRKIVPPK 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R++MK SME+LIHHFKLYTEG+H P GEVY AVEAPKGEFGVYL+SDG NKPYR K+RAP
Sbjct: 301 RSEMKSSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKGEFGVYLVSDGTNKPYRVKLRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHLQAM+FL +GH LAD +AILGS+DIVFGEVDR
Sbjct: 361 GFAHLQAMDFLTRGHMLADATAILGSIDIVFGEVDR 396
>gi|241518508|ref|YP_002979136.1| NADH dehydrogenase I, D subunit [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240862921|gb|ACS60585.1| NADH dehydrogenase I, D subunit [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 396
Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats.
Identities = 312/396 (78%), Positives = 356/396 (89%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + R+F +NFGPQHPAAHGVLRL+LEL+GEIVER+DPHIGLLHRGTEKLIE KT+LQ
Sbjct: 1 MAEHDVRNFHLNFGPQHPAAHGVLRLVLELNGEIVERIDPHIGLLHRGTEKLIEKKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYVAPM+QEHAY LA+EK+LG+E+P R QLIRVLY+EI RILSHLLNVTTQA
Sbjct: 61 ALPYFDRLDYVAPMSQEHAYCLAIEKMLGLEVPYRAQLIRVLYAEISRILSHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQD+PP+LV DIG WC F
Sbjct: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDLPPKLVADIGEWCRKF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P + DI LLT NRIFKQRNV++G + LEDAW WGFSGV+IRGSGAAWDLR++ PYECY
Sbjct: 181 PQVIEDIGGLLTDNRIFKQRNVDVGLISLEDAWAWGFSGVLIRGSGAAWDLRRANPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
S+L+FDIPIGK+GDCYDRYL+RM EMRESV+I+ QC + LLG GPV+++D K+VPPK
Sbjct: 241 SDLEFDIPIGKNGDCYDRYLIRMQEMRESVRIMSQCADLLLGSASTGPVNSNDGKVVPPK 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MKRSME+LIHHFKLYTEG+ VP GE YAAVEAPKGEFGVYL++DG N PYRCKIRAP
Sbjct: 301 RGEMKRSMEALIHHFKLYTEGFRVPKGEAYAAVEAPKGEFGVYLVADGTNAPYRCKIRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ HLQAM+F+C+GHQLADVSA+LGSLDIVFGEVDR
Sbjct: 361 GFTHLQAMDFMCRGHQLADVSAVLGSLDIVFGEVDR 396
>gi|163732062|ref|ZP_02139508.1| NADH dehydrogenase subunit D [Roseobacter litoralis Och 149]
gi|161394360|gb|EDQ18683.1| NADH dehydrogenase subunit D [Roseobacter litoralis Och 149]
Length = 406
Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats.
Identities = 288/394 (73%), Positives = 335/394 (85%), Gaps = 1/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++K R+F INFGPQHPAAHGVLRL+LELDGEIVER DPHIGLLHRGTEKL+E++T+LQ +
Sbjct: 14 EQKIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNL 73
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYVAPMNQEHA+ LA+EKL G+E+P R LIRVL+ EIGRIL+H+LN+TTQAMD
Sbjct: 74 PYFDRLDYVAPMNQEHAWCLAIEKLTGVEVPRRASLIRVLFCEIGRILNHILNITTQAMD 133
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTPPLWGFEEREKLMVFYERASG+R+HAAYFRPGGVHQD+PPELV+DI W FP
Sbjct: 134 VGALTPPLWGFEEREKLMVFYERASGARLHAAYFRPGGVHQDLPPELVDDIETWAHEFPR 193
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ DI LLT NRIFKQRN +IG V ED +GFSGVM+RGSG AWDLR++QPYECY E
Sbjct: 194 VIADIDGLLTENRIFKQRNADIGVVTEEDILEYGFSGVMVRGSGLAWDLRRAQPYECYDE 253
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF IP+GK+GDCYDRYL RM EMR+S+ II Q V +L G V + KI PP R+
Sbjct: 254 FDFQIPVGKNGDCYDRYLCRMEEMRQSLLIIHQAVEKLRAPEGQGDVL-ARGKITPPSRS 312
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
DMK SMESLIHHFKLYTEG+HVP GEVYA VEAPKGEFGVYL++DG NKPYR KIRAPG+
Sbjct: 313 DMKTSMESLIHHFKLYTEGFHVPAGEVYACVEAPKGEFGVYLVADGTNKPYRAKIRAPGF 372
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQAM+ + +GHQLADV+AI+G++D+VFGE+DR
Sbjct: 373 LHLQAMDHMSRGHQLADVAAIIGTMDVVFGEIDR 406
>gi|222475162|ref|YP_002563578.1| NADH dehydrogenase chain D (nuoD) [Anaplasma marginale str.
Florida]
gi|255003146|ref|ZP_05278110.1| NADH dehydrogenase subunit D [Anaplasma marginale str. Puerto Rico]
gi|255004272|ref|ZP_05279073.1| NADH dehydrogenase subunit D [Anaplasma marginale str. Virginia]
gi|222419299|gb|ACM49322.1| NADH dehydrogenase chain D (nuoD) [Anaplasma marginale str.
Florida]
Length = 398
Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats.
Identities = 254/393 (64%), Positives = 316/393 (80%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ + T+NFGPQHPAAHGV+RLILE+ GE++ER+DPHIGLLHRGTEKLIE KT+LQA+P
Sbjct: 10 SRIKPMTLNFGPQHPAAHGVMRLILEMSGEVIERIDPHIGLLHRGTEKLIEYKTYLQALP 69
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+PM+QEHAY+L VEKLL +P R + IRV++ E+ R+L+HLLNV++QA+D
Sbjct: 70 YFDRLDYVSPMSQEHAYSLCVEKLLQCVVPPRAKYIRVIFCELTRVLNHLLNVSSQALDT 129
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP LW FEERE+L+ FYERASG+R HAAY RPGG+ D+P L++DI + +SFP
Sbjct: 130 GATTPLLWMFEERERLLSFYERASGARFHAAYIRPGGIAADVPDGLLDDIHAFTESFPKL 189
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L+D+ LLT N I+KQRNV+IG V A WGFSG M+R G WDLRKSQPYE Y L
Sbjct: 190 LDDVDGLLTENSIWKQRNVDIGVVSKAQALDWGFSGPMLRACGIPWDLRKSQPYEIYETL 249
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DF +P+G +GDCYDRYLVRM EMRES+ IIRQC+N + GPV D KI PP+R +
Sbjct: 250 DFKVPVGSNGDCYDRYLVRMAEMRESISIIRQCLNGI----PEGPVKTDDRKIAPPRREE 305
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+K SME+LIHHFKL++EGY V GE Y AVEAPKGEFGVY++SDG N+PYRC+IRAPG+A
Sbjct: 306 LKYSMEALIHHFKLFSEGYKVAKGEAYVAVEAPKGEFGVYIVSDGTNRPYRCRIRAPGFA 365
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQA++ + +GH LAD++AI+GSLDIVFGE+DR
Sbjct: 366 HLQAIDAMARGHMLADLTAIIGSLDIVFGEIDR 398
>gi|58865384|ref|NP_001011907.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial precursor [Rattus norvegicus]
gi|81890431|sp|Q641Y2|NDUS2_RAT RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
2, mitochondrial; AltName: Full=Complex I-49kD;
Short=CI-49kD; AltName: Full=NADH-ubiquinone
oxidoreductase 49 kDa subunit; Flags: Precursor
gi|51980672|gb|AAH82067.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2 [Rattus norvegicus]
Length = 463
Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats.
Identities = 249/396 (62%), Positives = 314/396 (79%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ +K + T+NFGPQHPAAHGVLRL+LEL GE+V + DPHIGLLHRGTEKLIE KT+LQ
Sbjct: 72 LKEKVVTNVTLNFGPQHPAAHGVLRLVLELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQ 131
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+ M E AY+LAVEKLL I+ P R Q IRVL+ EI RIL+H++ VTT A
Sbjct: 132 ALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRILNHIMAVTTHA 191
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+D+GA+TP W FEEREK+ FYER SG+RMHAAY RPGGVHQD+P L++DI + +F
Sbjct: 192 LDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYEFSKNF 251
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
++++ ++LT NRI++ R V+IG V EDA +GFSGVM+RGSG WDLRK+QPY+ Y
Sbjct: 252 SLRIDEVEEMLTNNRIWRNRTVDIGVVSAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVY 311
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+++FD+PIG GDCYDRYL R+ EMR+S++II QC+N++ G + D K+ PPK
Sbjct: 312 DQVEFDVPIGSRGDCYDRYLCRVEEMRQSLRIIEQCLNKM----PPGEIKVDDAKVSPPK 367
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
RA+MK SMESLIHHFKLYTEGY VP G Y A+EAPKGEFGVYL+SDG ++PYRCKI+AP
Sbjct: 368 RAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAP 427
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHL ++ + KGH LADV AI+G+ DIVFGE+DR
Sbjct: 428 GFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEIDR 463
>gi|321463599|gb|EFX74614.1| hypothetical protein DAPPUDRAFT_307186 [Daphnia pulex]
Length = 469
Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats.
Identities = 245/394 (62%), Positives = 312/394 (79%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+K + +NFGPQHPAAHGVLRL+LELDGE V R DPHIGLLHRGTEKLIE KT+ QA+
Sbjct: 80 EKSVTNINLNFGPQHPAAHGVLRLVLELDGETVVRADPHIGLLHRGTEKLIEYKTYTQAL 139
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E Y+LAVEKLL I++P+R + IRVL++E+ RIL+HL+ + T A+D
Sbjct: 140 PYFDRLDYVSMMGNEQCYSLAVEKLLNIDVPLRAKYIRVLFAELTRILNHLMQIGTHALD 199
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GALTP W FEEREK+M FYER SG+RMHAAY RPGGV D+P L++DI +C F
Sbjct: 200 IGALTPFFWLFEEREKMMEFYERVSGARMHAAYVRPGGVALDLPLGLMDDIYEFCSKFGE 259
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++++ D+LT NRI+KQR V+IG V EDA +GFSGVM+RGSG WDLRK+QPY+ Y
Sbjct: 260 RIDEMEDVLTANRIWKQRTVDIGIVSAEDALNYGFSGVMLRGSGIKWDLRKTQPYDAYDL 319
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++FD+P+G GDCYDRYL R+ EMRES++II QC+N++ G V D KI+ PKR+
Sbjct: 320 VEFDVPVGLKGDCYDRYLCRVEEMRESLRIIDQCLNKMPA----GEVRVDDAKIMAPKRS 375
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SME+LIHHFKL+T+GY+VP G Y AVE PKGEFGVYL+SDG ++PYRCKI+APG+
Sbjct: 376 EMKTSMEALIHHFKLFTQGYNVPPGATYTAVENPKGEFGVYLVSDGSSRPYRCKIKAPGF 435
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL A+E + + H LAD+ AI+G+LD+VFGE+DR
Sbjct: 436 AHLAALEKVGRNHMLADIVAIIGTLDVVFGEIDR 469
>gi|99080585|ref|YP_612739.1| NADH dehydrogenase subunit D [Ruegeria sp. TM1040]
gi|123252495|sp|Q1GIN9|NUOD_SILST RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|99036865|gb|ABF63477.1| NADH dehydrogenase I D subunit [Ruegeria sp. TM1040]
Length = 403
Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats.
Identities = 288/394 (73%), Positives = 338/394 (85%), Gaps = 3/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++K R+F INFGPQHPAAHGVLRL+LELDGEIVER DPHIGLLHRGTEKL+E++T+LQ +
Sbjct: 13 EQKIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNL 72
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYVAPMNQEHA+ LA+EKL G+E+P R QLIRVLYSEIGRIL+HLLN+TTQAMD
Sbjct: 73 PYFDRLDYVAPMNQEHAWCLAIEKLTGVEVPRRAQLIRVLYSEIGRILNHLLNITTQAMD 132
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTPPLWGFEEREKLM+FYERA G+R+HAAYFRPGGVHQD+P EL++DI W FP
Sbjct: 133 VGALTPPLWGFEEREKLMIFYERACGARLHAAYFRPGGVHQDLPDELLDDIDLWAMEFPK 192
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++DI LLT NRIFKQRN +IG V +D +GFSGVM+RGSG AWDLR++QPYECY E
Sbjct: 193 VMDDIDGLLTENRIFKQRNCDIGVVTEDDIQKYGFSGVMVRGSGLAWDLRRAQPYECYDE 252
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF IP+GK+GDCYDRYLVRM EMR+S+ IIRQ + +L + K+ PPKR
Sbjct: 253 FDFQIPVGKNGDCYDRYLVRMEEMRQSLSIIRQAIAKLREATGDV---LARGKLTPPKRG 309
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
DMK SMESLIHHFKLYTEG+HVP GEVYAAVEAPKGEFGVYL++DG NKPYR K+RAPG+
Sbjct: 310 DMKTSMESLIHHFKLYTEGFHVPEGEVYAAVEAPKGEFGVYLVADGSNKPYRAKLRAPGF 369
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQAM+++ KGHQLADV+AI+G++DIVFGE+DR
Sbjct: 370 LHLQAMDYVAKGHQLADVAAIIGTMDIVFGEIDR 403
>gi|58617180|ref|YP_196379.1| NADH dehydrogenase subunit D [Ehrlichia ruminantium str. Gardel]
gi|75507498|sp|Q5FGV3|NUOD_EHRRG RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|58416792|emb|CAI27905.1| NADH-quinone oxidoreductase chain D [Ehrlichia ruminantium str.
Gardel]
Length = 393
Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats.
Identities = 261/395 (66%), Positives = 325/395 (82%), Gaps = 4/395 (1%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
D K T+NFGPQHPAAHGV+RL+LE+ GE++ER+DPHIGLLHRGTEKLIE KT+LQA
Sbjct: 3 DHVKITPMTLNFGPQHPAAHGVMRLVLEMGGEVIERIDPHIGLLHRGTEKLIEYKTYLQA 62
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+PYFDRLDYV+PM QEHAY+L VEKLL E+PIR + +RV++ E+ RIL+HLLN+++QA+
Sbjct: 63 LPYFDRLDYVSPMAQEHAYSLCVEKLLKCEVPIRAKYLRVIFCELTRILNHLLNISSQAL 122
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D+GA+TP LW FEEREK++ FYERASG+R H+AY RPGGV DIP +L+ DI + ++FP
Sbjct: 123 DIGAMTPLLWMFEEREKILNFYERASGARFHSAYIRPGGVAADIPEDLIHDIFQFVNTFP 182
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
++D+ LLT NRI+KQRNV+IG V + A WGFSG M+R G WDLRKSQPYE Y
Sbjct: 183 KFMDDVDSLLTENRIWKQRNVDIGVVSKKQALNWGFSGPMLRACGIPWDLRKSQPYEIYD 242
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
EL+F IPIG+ GDCYDRYLVRM E+RES+ ++ QC+NR+ GPV D KI PPKR
Sbjct: 243 ELEFKIPIGEKGDCYDRYLVRMAEIRESISLVEQCLNRIPD----GPVKTDDRKIAPPKR 298
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
++MK+SME+LIHHFKLY+EGY VP GE Y AVEAPKGEFGVY++SDG NKPYRC+IRAPG
Sbjct: 299 SEMKKSMEALIHHFKLYSEGYIVPAGETYMAVEAPKGEFGVYIVSDGTNKPYRCRIRAPG 358
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AHLQA++ + KGH LAD++AI+GSLDIVFGE+DR
Sbjct: 359 FAHLQAIDMMAKGHMLADLTAIIGSLDIVFGEIDR 393
>gi|114569908|ref|YP_756588.1| NADH dehydrogenase subunit D [Maricaulis maris MCS10]
gi|122316122|sp|Q0APY7|NUOD_MARMM RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|114340370|gb|ABI65650.1| NADH dehydrogenase subunit D [Maricaulis maris MCS10]
Length = 402
Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats.
Identities = 297/390 (76%), Positives = 334/390 (85%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
R+FTINFGPQHPAAHGVLRL+LELDGE+VERVDPHIGLLHRGTEKL+E KT+LQ + YFD
Sbjct: 13 RNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLLEHKTYLQGIGYFD 72
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYVAPMNQEHA+ +A EKL GI +P RG+ +RVLY EIGR+L+HLLNVTTQAMDVGAL
Sbjct: 73 RLDYVAPMNQEHAFCMAAEKLAGITVPKRGEYVRVLYCEIGRVLNHLLNVTTQAMDVGAL 132
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TPPLWGFEEREKLMVFYERASGSRMHA YFRPGGVHQD+P +LVEDI WCD FP+ L+D
Sbjct: 133 TPPLWGFEEREKLMVFYERASGSRMHAHYFRPGGVHQDLPMKLVEDIRAWCDQFPAKLDD 192
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
I LLT NRIFKQRNV+IG V ED WGFSGVM+RGSG AWDLR+SQPY Y EL FD
Sbjct: 193 IDSLLTENRIFKQRNVDIGVVTKEDVLAWGFSGVMVRGSGLAWDLRRSQPYSVYDELKFD 252
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
IP+GK+GDCYDRYL RM EMRESVKI+ QC + L+ G V A+D K PP+RA+MKR
Sbjct: 253 IPVGKNGDCYDRYLCRMEEMRESVKIMIQCCDWLMKDENAGEVLATDSKFSPPRRAEMKR 312
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
SME+LI HFKLYTEG HV GE Y AVEAPKGEFGVYL+SDG NKPYR KIRAPG+AHL
Sbjct: 313 SMEALIQHFKLYTEGVHVEEGETYVAVEAPKGEFGVYLVSDGSNKPYRLKIRAPGFAHLA 372
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AM+++ KGH LADVSAI+GSLD+VFGE+DR
Sbjct: 373 AMDYMSKGHMLADVSAIIGSLDVVFGEIDR 402
>gi|49475655|ref|YP_033696.1| NADH dehydrogenase subunit D [Bartonella henselae str. Houston-1]
gi|81696157|sp|Q6G391|NUOD_BARHE RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|49238462|emb|CAF27690.1| NADH dehydrogenase I, D subunit [Bartonella henselae str.
Houston-1]
Length = 396
Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats.
Identities = 299/396 (75%), Positives = 345/396 (87%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + R+F INFGPQHPAAHGVLR++LELDGE+VERVDPHIGLLHRGTEKL+ETKT+LQ
Sbjct: 1 MAEVNVRNFNINFGPQHPAAHGVLRMVLELDGEVVERVDPHIGLLHRGTEKLMETKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A PY DRLDYVAPMNQEHA+ LA+EKLLG+E+P RGQLIRVL+SEIGRIL+HLLNVTTQA
Sbjct: 61 AGPYLDRLDYVAPMNQEHAFVLAIEKLLGVEVPKRGQLIRVLFSEIGRILNHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFE+RE+LM+FYERA G+R+HA YFRPGGVHQD+P LVEDIG + D F
Sbjct: 121 MDVGALTPPLWGFEQRERLMIFYERACGARLHANYFRPGGVHQDLPESLVEDIGNFIDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
AL + L+T NRIFKQRNV+IG V +++AW GFSGVMIRG+G WDLRKSQPYECY
Sbjct: 181 LIALGKLDALITPNRIFKQRNVDIGVVSIDEAWARGFSGVMIRGAGVPWDLRKSQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E++FDIP+GK+ DCYDRYL+RM EMR+S KI+RQCV+RLL K PVS+ D KIVPPK
Sbjct: 241 DEMEFDIPVGKNSDCYDRYLIRMEEMRQSAKIMRQCVDRLLSTEKNEPVSSLDRKIVPPK 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MK SME+LIHHFKLYTEG+ P GEVY AVEAPKGEFGVYL+SDG NKPYR K+RAP
Sbjct: 301 RCEMKSSMEALIHHFKLYTEGFRTPPGEVYVAVEAPKGEFGVYLVSDGTNKPYRVKLRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHLQAM+FL +GH LAD +AILGS+DIVFGEVDR
Sbjct: 361 GFAHLQAMDFLTRGHMLADATAILGSIDIVFGEVDR 396
>gi|194913546|ref|XP_001982722.1| GG16443 [Drosophila erecta]
gi|190647938|gb|EDV45241.1| GG16443 [Drosophila erecta]
Length = 468
Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats.
Identities = 247/394 (62%), Positives = 309/394 (78%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+K R+ T+NFGPQHPAAHGVLRL+LELDGE V R DPHIGLLHRGTEKLIE KT+ QA+
Sbjct: 79 EKSVRNLTLNFGPQHPAAHGVLRLVLELDGETVMRADPHIGLLHRGTEKLIEYKTYTQAL 138
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E Y+LAVEKLL I++P+R + IR L++EI RIL+H++ V T A+D
Sbjct: 139 PYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRILNHIMAVGTHALD 198
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTP W FEEREK+M FYER SG+RMHAAY RPGGV D+P L++DI + F
Sbjct: 199 VGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFASKFAE 258
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+++ D+LT NRI+ QR +IG V E+A +GFSGVM+RGSG WDLRK QPY+ Y
Sbjct: 259 RLDEVEDVLTTNRIWVQRTEDIGIVTAEEALNYGFSGVMLRGSGIKWDLRKQQPYDAYHL 318
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+DFD+PIG GDCYDRYL R+ EMR+S++II QC+N++ G + + D K+ PP R+
Sbjct: 319 VDFDVPIGTKGDCYDRYLCRVEEMRQSLRIIDQCLNQMPA----GEIKSDDAKVAPPSRS 374
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SME+LIHHFKL+T+GY VP G Y A+EAPKGEFGVYLISDG ++PYRCKI+APG+
Sbjct: 375 EMKTSMEALIHHFKLFTQGYQVPPGATYTAIEAPKGEFGVYLISDGSSRPYRCKIKAPGF 434
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL A+E + K H LADV AI+G+LD+VFGE+DR
Sbjct: 435 AHLAALEKIGKQHMLADVVAIIGTLDVVFGEIDR 468
>gi|148707168|gb|EDL39115.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, isoform CRA_a [Mus
musculus]
Length = 436
Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats.
Identities = 248/396 (62%), Positives = 314/396 (79%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ +K + T+NFGPQHPAAHGVLRL+LEL GE+V + DPHIGLLHRGTEKLIE KT+LQ
Sbjct: 45 LKEKAVTNMTLNFGPQHPAAHGVLRLVLELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQ 104
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+ M E AY++AVEKLL I+ P R Q IRVL+ EI RIL+H++ VTT A
Sbjct: 105 ALPYFDRLDYVSMMCNEQAYSIAVEKLLNIQPPPRAQWIRVLFGEITRILNHIMAVTTHA 164
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+D+GA+TP W FEEREK+ FYER SG+RMHAAY RPGGVHQD+P L++DI + +F
Sbjct: 165 LDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLLDDIYEFSKNF 224
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
++++ ++LT NRI++ R V+IG V EDA +GFSGVM+RGSG WDLRK+QPY+ Y
Sbjct: 225 SLRIDEVEEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVY 284
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+++FD+PIG GDCYDRYL R+ EMR+S++II QC+N++ G + D K+ PPK
Sbjct: 285 DQVEFDVPIGSRGDCYDRYLCRVEEMRQSLRIIEQCLNKM----PPGEIKVDDAKVSPPK 340
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
RA+MK SMESLIHHFKLYTEGY VP G Y A+EAPKGEFGVYL+SDG ++PYRCKI+AP
Sbjct: 341 RAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAP 400
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHL ++ + KGH LADV AI+G+ DIVFGE+DR
Sbjct: 401 GFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEIDR 436
>gi|289065193|ref|YP_003434245.1| NADH dehydrogenase subunit 7 [Chattonella marina]
gi|288871905|dbj|BAI70592.1| NADH dehydrogenase subunit 7 [Chattonella marina]
Length = 397
Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats.
Identities = 260/393 (66%), Positives = 319/393 (81%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ ++FTINFGPQHPAAHGVLRL+LEL+GE+V+R DPHIGLLHRGTEKLIE KT++QA+P
Sbjct: 9 RNIKNFTINFGPQHPAAHGVLRLVLELNGEVVDRADPHIGLLHRGTEKLIEYKTYIQALP 68
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M QEH Y L +EKLLG +PIR Q IRVL+ EI RIL+HLL V AMDV
Sbjct: 69 YFDRLDYVSMMTQEHTYVLGIEKLLGCNVPIRSQYIRVLFCEITRILNHLLAVGCHAMDV 128
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+TP LW FEEREKLM FYER SG+RMHA YFRPGGV QD+P L++DI + F +
Sbjct: 129 GAMTPFLWAFEEREKLMEFYERVSGARMHAGYFRPGGVSQDLPLGLLDDIYLFSKQFVTR 188
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L+++ ++LT NRI+KQR V+IG V ++A WGFSGVM+RGS +WDLRK+QPYE Y ++
Sbjct: 189 LDEMEEMLTTNRIWKQRLVDIGIVTKKEACDWGFSGVMLRGSTISWDLRKNQPYEVYDKM 248
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FD+PIGK+GDCYDRYL+R+ EMRES+KII+QC+N + +GP+ D KI P R D
Sbjct: 249 EFDVPIGKNGDCYDRYLIRVQEMRESLKIIQQCLNNM----PLGPIKLDDHKITSPSRLD 304
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK+SMESLIHHFKLYTEG VP GE Y + EAPKGEFGVYLIS+G N+PYRCKI+APG+
Sbjct: 305 MKQSMESLIHHFKLYTEGMIVPAGETYTSTEAPKGEFGVYLISNGTNRPYRCKIKAPGFG 364
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQA++F+ KGH +ADV I+G+ DIVFGEVDR
Sbjct: 365 HLQALDFMSKGHMIADVVTIIGTQDIVFGEVDR 397
>gi|326434726|gb|EGD80296.1| NADH dehydrogenase iron-sulfur protein 2 [Salpingoeca sp. ATCC
50818]
Length = 457
Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats.
Identities = 256/396 (64%), Positives = 318/396 (80%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ +++ + T+NFGPQHPAAHGVLRL+LELDGEIV DPH+GLLHRGTEKLIE K +LQ
Sbjct: 66 VPEQEVSNLTVNFGPQHPAAHGVLRLVLELDGEIVRHADPHVGLLHRGTEKLIEYKNYLQ 125
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+ M E AY+LAVEKLL IE+P R + IRVL+ E+ RIL+H++ VTT A
Sbjct: 126 ALPYFDRLDYVSMMCNEQAYSLAVEKLLNIEVPERAKYIRVLFGELTRILNHIMGVTTHA 185
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+DVGALTP LW FEEREK+M FYER SG+RMHAAY RPGGV D+P L+EDI W +F
Sbjct: 186 LDVGALTPFLWLFEEREKMMEFYERVSGARMHAAYVRPGGVSLDMPIGLMEDIYQWAQAF 245
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P+ ++++ +LLTGNRI+KQR V++G V +DA WGFSGVM+RGSG WDLRKSQPY+ Y
Sbjct: 246 PARIDEVEELLTGNRIWKQRLVDVGVVTAKDALDWGFSGVMLRGSGIPWDLRKSQPYDAY 305
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+++FD+P+G GD YDRYL+R EMR+SV+II QC+N + G V D K+ PP+
Sbjct: 306 DKVEFDVPVGSRGDSYDRYLIRCEEMRQSVRIINQCLNDMPD----GEVRVDDAKVAPPR 361
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
RA+MK SME+LIHHFKLYTEGY VP G Y A+EAPKGEFGVYL+SDG +KPYRCKI+AP
Sbjct: 362 RAEMKESMEALIHHFKLYTEGYQVPPGSTYTAIEAPKGEFGVYLVSDGTSKPYRCKIKAP 421
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHL ++ + KGH LADV A++G+LDIVFGEVDR
Sbjct: 422 GFAHLAGLDMMAKGHMLADVVALIGTLDIVFGEVDR 457
>gi|148284882|ref|YP_001248972.1| NADH dehydrogenase subunit D [Orientia tsutsugamushi str. Boryong]
gi|218534450|sp|A5CES2|NUOD_ORITB RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|146740321|emb|CAM80725.1| NADH dehydrogenase I chain D [Orientia tsutsugamushi str. Boryong]
Length = 396
Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats.
Identities = 262/393 (66%), Positives = 325/393 (82%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K S+ F +N GPQHPA HGVLRLILE+DGEIVER DPHIGLLHRGTEKLIE KT+LQA+P
Sbjct: 8 KHSKKFKLNLGPQHPATHGVLRLILEMDGEIVERADPHIGLLHRGTEKLIEYKTYLQAIP 67
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+PM QEHA+ALA+E LL E+P+R Q IRV++SE+ RIL+H LN+ TQA+DV
Sbjct: 68 YFDRLDYVSPMCQEHAFALAIEHLLKCEVPLRAQYIRVMFSELTRILNHTLNIATQALDV 127
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP LW FEEREK+M FYER SGSR+HA YFRPGGV QD+P L+E+I +C+ FP
Sbjct: 128 GATTPLLWMFEEREKIMEFYERVSGSRLHANYFRPGGVAQDLPEGLIENIVDFCEQFPCK 187
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ D+ LLT NRI+KQR V+IG V + A WGFSGVM+RGSG AWDLRKSQPY+ Y+ L
Sbjct: 188 IADLETLLTDNRIWKQRTVDIGIVSKQQAMDWGFSGVMLRGSGIAWDLRKSQPYDQYANL 247
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DFD+ IGK+GDCYDRYL+R+ EM +S+KII+QC+ ++ VG + DP I PPKR++
Sbjct: 248 DFDVAIGKNGDCYDRYLIRIEEMYQSIKIIKQCIQKM----PVGEIKTQDPSISPPKRSE 303
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+K+SME+LI+HFKLY+EGY+VP GEVYAAVEAPKGEFGVYL SDG N+PYRC+I+APG+A
Sbjct: 304 IKKSMEALINHFKLYSEGYNVPAGEVYAAVEAPKGEFGVYLYSDGTNRPYRCRIKAPGFA 363
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ ++F+ +GH L+D+ I+ +LDIVFGE+DR
Sbjct: 364 HLQGLDFMARGHSLSDIITIIATLDIVFGEIDR 396
>gi|74226763|dbj|BAE27028.1| unnamed protein product [Mus musculus]
Length = 463
Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats.
Identities = 247/396 (62%), Positives = 314/396 (79%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ +K + +NFGPQHPAAHGVLRL+LEL GE+V + DPHIGLLHRGTEKLIE KT+LQ
Sbjct: 72 LKEKAVTNMALNFGPQHPAAHGVLRLVLELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQ 131
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+ M E AY++AVEKLL I+ P R Q IRVL+ EI RIL+H+++VTT A
Sbjct: 132 ALPYFDRLDYVSMMCNEQAYSIAVEKLLNIQPPPRAQWIRVLFGEITRILNHIMSVTTHA 191
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+D+GA+TP W FEEREK+ FYER SG+RMHAAY RPGGVHQD+P L++DI + +F
Sbjct: 192 LDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLLDDIYEFSKNF 251
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
++++ ++LT NRI++ R V+IG V EDA +GFSGVM+RGSG WDLRK+QPY+ Y
Sbjct: 252 SLRIDEVEEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVY 311
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+++FD+PIG GDCYDRYL R+ EMR+S++II QC+N++ G + D K+ PPK
Sbjct: 312 DQVEFDVPIGSRGDCYDRYLCRVEEMRQSLRIIEQCLNKM----PPGEIKVDDAKVSPPK 367
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
RA+MK SMESLIHHFKLYTEGY VP G Y A+EAPKGEFGVYL+SDG ++PYRCKI+AP
Sbjct: 368 RAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAP 427
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHL ++ + KGH LADV AI+G+ DIVFGE+DR
Sbjct: 428 GFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEIDR 463
>gi|71083585|ref|YP_266304.1| NADH dehydrogenase subunit D [Candidatus Pelagibacter ubique
HTCC1062]
gi|123646642|sp|Q4FM88|NUOD_PELUB RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|71062698|gb|AAZ21701.1| NADH Dehydrogenase I Chain D [Candidatus Pelagibacter ubique
HTCC1062]
Length = 391
Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats.
Identities = 285/394 (72%), Positives = 337/394 (85%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
KK ++ +NFGPQHPAAHGVLRLILELDGE+VE+ DPHIGLLHRGTEKLIE KT++QAV
Sbjct: 2 TKKIKTLNLNFGPQHPAAHGVLRLILELDGEVVEKADPHIGLLHRGTEKLIENKTYMQAV 61
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYVAPMNQEHA+ALA+EK+L I +PIR QLIRV++ EIGRILSH+LNVTTQA+D
Sbjct: 62 PYFDRLDYVAPMNQEHAFALAIEKILKINVPIRAQLIRVMFCEIGRILSHILNVTTQALD 121
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTP LWGFEERE LM FYERASGSR+HA YFR GGVHQD+P L EDIG +C+SFP
Sbjct: 122 VGALTPSLWGFEERETLMTFYERASGSRLHANYFRAGGVHQDLPMGLAEDIGNFCESFPK 181
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++D+ LLT NRIFKQRNV+IG V EDA + FSGVMIRGSG WDLRKSQPY+CY +
Sbjct: 182 IIDDLETLLTDNRIFKQRNVDIGIVTKEDALDYSFSGVMIRGSGVPWDLRKSQPYDCYEQ 241
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
L+F IP+GK+GDC+DRYL R+ EMRESV II+QC++++ + GP+ + D KI PP +
Sbjct: 242 LEFKIPVGKNGDCFDRYLCRIEEMRESVSIIKQCLSKM----EKGPIKSLDGKISPPPKK 297
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
D+K+SME+LIHHFKL+TEGY V E+Y AVEAPKGEFGVYLISDG +KPY+CKIRAPG+
Sbjct: 298 DIKQSMEALIHHFKLFTEGYRVDKDEIYTAVEAPKGEFGVYLISDGTSKPYKCKIRAPGF 357
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+HLQAM++L KGH LADV A+LGSLDIVFGEVDR
Sbjct: 358 SHLQAMDYLIKGHMLADVPAVLGSLDIVFGEVDR 391
>gi|195133988|ref|XP_002011420.1| GI14091 [Drosophila mojavensis]
gi|193912043|gb|EDW10910.1| GI14091 [Drosophila mojavensis]
Length = 449
Score = 454 bits (1169), Expect = e-126, Method: Composition-based stats.
Identities = 247/394 (62%), Positives = 308/394 (78%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+K R+ T+NFGPQHPAAHGVLRL+LELDGE V R DPHIGLLHRGTEKLIE KT+ QA+
Sbjct: 60 EKSVRNLTLNFGPQHPAAHGVLRLVLELDGETVMRADPHIGLLHRGTEKLIEYKTYTQAL 119
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E Y+LAVEKLL I++P+R + IR L++EI RIL+H++ V T A+D
Sbjct: 120 PYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRILNHIMAVGTHALD 179
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTP W FEEREK+M FYER SG+RMHAAY RPGGV D+P L++DI + F
Sbjct: 180 VGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLLDDIYEFASKFGE 239
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+++ D+L+ NRI+ QR +IG V E+A +GFSGVM+RGSG WDLRK QPY+ Y
Sbjct: 240 RLDEVEDVLSTNRIWVQRTEDIGIVSAEEALNYGFSGVMLRGSGIKWDLRKQQPYDAYHL 299
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+DFD+PIG GDCYDRYL R+ EMR+S++II QC+N++ G V D K+ PP R+
Sbjct: 300 VDFDVPIGTKGDCYDRYLCRIEEMRQSLRIIDQCLNQM----PPGEVKTDDAKVTPPSRS 355
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SME+LIHHFKL+T+GY VP G Y A+EAPKGEFGVYLISDG ++PYRCKI+APG+
Sbjct: 356 EMKTSMEALIHHFKLFTQGYQVPPGATYTAIEAPKGEFGVYLISDGSSRPYRCKIKAPGF 415
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL A+E + K H LADV AI+G+LD+VFGE+DR
Sbjct: 416 AHLAALEKIGKQHMLADVVAIIGTLDVVFGEIDR 449
>gi|114777364|ref|ZP_01452361.1| NADH dehydrogenase subunit D [Mariprofundus ferrooxydans PV-1]
gi|114552146|gb|EAU54648.1| NADH dehydrogenase subunit D [Mariprofundus ferrooxydans PV-1]
Length = 392
Score = 454 bits (1169), Expect = e-126, Method: Composition-based stats.
Identities = 248/393 (63%), Positives = 307/393 (78%), Gaps = 2/393 (0%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+VER DPHIGLLHRGTEKL E KT+LQ +P
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLELDGEVVERADPHIGLLHRGTEKLFEEKTYLQNLP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDR DYV+ M EHAY LAVEKLLGIE P R Q IRV+++E+ RIL+H + + A+D+
Sbjct: 62 YFDRFDYVSMMANEHAYTLAVEKLLGIEAPERAQYIRVMFAELTRILNHCMWLGAVALDI 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+T L+ F ERE + +YE SG+RMHA+YFRPGGV +D+P L+E I + + FP
Sbjct: 122 GAMTVFLFCFREREDIFDYYEAVSGARMHASYFRPGGVAKDLPEGLLERIKGFTERFPGF 181
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ LLT NRI+KQRNV+I V E A WGFSG MIRGSG AWDLRK+QPY+ Y ++
Sbjct: 182 VDEYETLLTENRIWKQRNVDIAVVDEESALEWGFSGPMIRGSGVAWDLRKTQPYDVYDKM 241
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DFDIP+G GDCYDRYLVR+ EMR+S +II QCV L N GPV D K+ P RA+
Sbjct: 242 DFDIPVGVTGDCYDRYLVRVEEMRQSNRIIEQCVEWL--SNNPGPVKVDDYKLTSPPRAE 299
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK MESLIHHFK ++EGYHVP GEVY VE PKGEFGVYL+SDG NKPYR K+RAPG+A
Sbjct: 300 MKSDMESLIHHFKYFSEGYHVPEGEVYQVVEHPKGEFGVYLVSDGSNKPYRMKVRAPGFA 359
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H++A++++C+GH +ADV AILG+ DIVFGEVDR
Sbjct: 360 HIEALDYMCRGHMIADVVAILGTQDIVFGEVDR 392
>gi|295663795|ref|XP_002792450.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Paracoccidioides
brasiliensis Pb01]
gi|226279120|gb|EEH34686.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Paracoccidioides
brasiliensis Pb01]
Length = 479
Score = 454 bits (1169), Expect = e-126, Method: Composition-based stats.
Identities = 245/393 (62%), Positives = 308/393 (78%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+K R +T+NFGPQHPAAHGVLRLILEL+GE + R DPH+GLLHRGTEKLIE KT++QA+P
Sbjct: 91 RKIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYMQALP 150
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M E ++LAVEKLL IEIP R + IR +++EI RIL+HL++V + AMDV
Sbjct: 151 YFDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKWIRTMFAEITRILNHLMSVLSHAMDV 210
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP LWGFEEREKLM FYER SG+R+HAAY RPGGVHQDIP L++DI W F
Sbjct: 211 GALTPFLWGFEEREKLMEFYERVSGARLHAAYIRPGGVHQDIPLGLLDDIYQWATQFGDR 270
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ +LLT NRI+K R IG V +A + FSGVM+RGSG WD+RKSQPY+ Y ++
Sbjct: 271 IDETEELLTENRIWKARTQGIGVVSAAEALNYSFSGVMLRGSGVPWDVRKSQPYDAYDQV 330
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FD+P+G +GDCYDRYL RM E R+S++II QC+N++ GPV D KI PP RA
Sbjct: 331 EFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNKMPA----GPVRVEDYKISPPPRAA 386
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK +ME+LIHHF L+T+GY VP GE Y+A+EAPKGE GV+L+SDG +PYRCKIRAPG+A
Sbjct: 387 MKENMEALIHHFLLFTKGYAVPPGETYSAIEAPKGEMGVFLVSDGSERPYRCKIRAPGFA 446
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HL + + +GH LAD AI+G++D+VFGEVDR
Sbjct: 447 HLSCFDQISRGHLLADAVAIIGTMDLVFGEVDR 479
>gi|217979052|ref|YP_002363199.1| NADH dehydrogenase I, D subunit [Methylocella silvestris BL2]
gi|217504428|gb|ACK51837.1| NADH dehydrogenase I, D subunit [Methylocella silvestris BL2]
Length = 394
Score = 454 bits (1169), Expect = e-126, Method: Composition-based stats.
Identities = 298/392 (76%), Positives = 339/392 (86%), Gaps = 1/392 (0%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ R+FTINFGPQHPAAHGVLRL+LELDGE+VERVDPHIGLLHRGTEKL+E +T+LQ VPY
Sbjct: 4 QVRNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLMEARTYLQNVPY 63
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
FDRLDYVAPMNQEHA+ LA+EKL+G+E P R QL+RVL+ EIGRILSHLLNVTTQAMDVG
Sbjct: 64 FDRLDYVAPMNQEHAFCLAIEKLVGLEAPRRAQLLRVLFCEIGRILSHLLNVTTQAMDVG 123
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
ALTPPLWGFEEREKLMVFYERASG+R+HA YFRPGGVH DIP +L++DI WCD F
Sbjct: 124 ALTPPLWGFEEREKLMVFYERASGARLHANYFRPGGVHMDIPAQLIDDIEAWCDPFLKTC 183
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+D+ L NRIFKQRNV+IG V LED W WGFSGVM+RGSGAAWDLRK+QPYECY E++
Sbjct: 184 DDLQALFIDNRIFKQRNVDIGIVSLEDCWAWGFSGVMVRGSGAAWDLRKAQPYECYEEME 243
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDIP+G+HGD YDR ++RM EMR+SV I++QCV +L GPV A K PP R +M
Sbjct: 244 FDIPVGRHGDNYDRQVIRMEEMRQSVSIMKQCVAKLREPAGQGPVLAKG-KFAPPSRGEM 302
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
KRSME+LIHHFKLYTEG+HVP GEVYAAVEAPKGEFGVYL+SDG NKPYRCKIRAPG+AH
Sbjct: 303 KRSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKGEFGVYLVSDGTNKPYRCKIRAPGFAH 362
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
L AM+FLC+ LADVSAILGS+DIVFGEVDR
Sbjct: 363 LAAMDFLCRKSMLADVSAILGSIDIVFGEVDR 394
>gi|169603301|ref|XP_001795072.1| hypothetical protein SNOG_04659 [Phaeosphaeria nodorum SN15]
gi|111067299|gb|EAT88419.1| hypothetical protein SNOG_04659 [Phaeosphaeria nodorum SN15]
Length = 477
Score = 454 bits (1169), Expect = e-126, Method: Composition-based stats.
Identities = 240/395 (60%), Positives = 307/395 (77%), Gaps = 4/395 (1%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ +K R +T+NFGPQHPAAHGVLRLILEL+GE + R DPH+GLLHRGTEKLIE +T+LQA
Sbjct: 87 ENRKIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYRTYLQA 146
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+PYFDRLDYV+ M E ++LAVEKLL IEIP R + IR ++ EI RIL+HL++V + AM
Sbjct: 147 LPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKYIRTMFGEITRILNHLMSVLSHAM 206
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
DVGALTP LWGFEEREKLM FYER SG+R+HAAY RPGGV QD+P L++DI W F
Sbjct: 207 DVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDLPIGLLDDIYQWATQFG 266
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ ++LT NRI+ R +G V DA + FSGVM+RGSG WD+RKSQPY+ Y
Sbjct: 267 DRIDETEEMLTDNRIWIGRTKGVGVVSAADAINYSFSGVMLRGSGVPWDVRKSQPYDAYD 326
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+++FD+P+G +GDCYDRYL RM E R+S++II QC+N++ GPV D KI PP R
Sbjct: 327 KVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNQMPA----GPVKVEDYKIAPPPR 382
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
A MK +ME+LIHHF L+++GY VP GE Y+A+EAPKGE GV+++SDG +PYRCKIRAPG
Sbjct: 383 AAMKENMEALIHHFLLFSKGYTVPPGETYSAIEAPKGEMGVFVVSDGSERPYRCKIRAPG 442
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AHL M+ + +GH LAD AI+G++D+VFGEVDR
Sbjct: 443 FAHLACMDQISRGHLLADAVAIIGTMDLVFGEVDR 477
>gi|300023451|ref|YP_003756062.1| NADH dehydrogenase I, D subunit [Hyphomicrobium denitrificans ATCC
51888]
gi|299525272|gb|ADJ23741.1| NADH dehydrogenase I, D subunit [Hyphomicrobium denitrificans ATCC
51888]
Length = 396
Score = 454 bits (1169), Expect = e-126, Method: Composition-based stats.
Identities = 307/396 (77%), Positives = 350/396 (88%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + + R+F INFGPQHPAAHGVLRL+LELDGE+VERVDPHIGLLHRGTEKLIE KT++Q
Sbjct: 1 MAETEIRNFNINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEHKTYMQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+ YFDRLDYVAPMNQEHA+ LA E+LLGI +P RGQLIRVL+SEIGRILSHLLNVTTQA
Sbjct: 61 AIGYFDRLDYVAPMNQEHAFCLAAERLLGITVPRRGQLIRVLFSEIGRILSHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLMVFYERASG+RMHA YFR GGVHQD+P +L++DI +CD F
Sbjct: 121 MDVGALTPPLWGFEEREKLMVFYERASGARMHAKYFRIGGVHQDLPEKLIDDIYAFCDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
++DI LLT NRIFKQRNV+IG V L++A+ WGFSGVM+RGSGAAWDLRKSQPYECY
Sbjct: 181 LKVVDDIDVLLTENRIFKQRNVDIGVVSLDEAFAWGFSGVMVRGSGAAWDLRKSQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
SELDFDIPIGK+GDCYDRYL+RM EMRES K+++QC L GP SA + K+VPPK
Sbjct: 241 SELDFDIPIGKNGDCYDRYLIRMQEMRESTKLMKQCCELLKSPGGQGPHSAENKKVVPPK 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MKRSME+LIHHFKLYTEG+HVP G+VYAAVEAPKGEFGVYL++DG NKPYRCKIRAP
Sbjct: 301 RGEMKRSMEALIHHFKLYTEGFHVPAGDVYAAVEAPKGEFGVYLVADGSNKPYRCKIRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ HL AM+FL +GH LADVSAI+GSLDIVFGE+DR
Sbjct: 361 GFPHLAAMDFLNRGHMLADVSAIIGSLDIVFGEIDR 396
>gi|91761994|ref|ZP_01263959.1| NADH dehydrogenase delta subunit [Candidatus Pelagibacter ubique
HTCC1002]
gi|91717796|gb|EAS84446.1| NADH dehydrogenase delta subunit [Candidatus Pelagibacter ubique
HTCC1002]
Length = 391
Score = 454 bits (1169), Expect = e-125, Method: Composition-based stats.
Identities = 285/394 (72%), Positives = 337/394 (85%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
KK ++ +NFGPQHPAAHGVLRLILELDGE+VE+ DPHIGLLHRGTEKLIE KT++QAV
Sbjct: 2 TKKIKTLNLNFGPQHPAAHGVLRLILELDGEVVEKADPHIGLLHRGTEKLIENKTYMQAV 61
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYVAPMNQEHA+ALA+EK+L I +PIR QLIRV++ EIGRILSH+LNVTTQA+D
Sbjct: 62 PYFDRLDYVAPMNQEHAFALAIEKILKINVPIRAQLIRVMFCEIGRILSHILNVTTQALD 121
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTP LWGFEERE LM FYERASGSR+HA YFR GGVHQD+P L EDIG +C+SFP
Sbjct: 122 VGALTPSLWGFEERETLMTFYERASGSRLHANYFRAGGVHQDLPMGLEEDIGNFCESFPK 181
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++D+ LLT NRIFKQRNV+IG V EDA + FSGVMIRGSG WDLRKSQPY+CY +
Sbjct: 182 IIDDLETLLTDNRIFKQRNVDIGIVTKEDALDYSFSGVMIRGSGVPWDLRKSQPYDCYEQ 241
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
L+F IP+GK+GDC+DRYL R+ EMRESV II+QC++++ + GP+ + D KI PP +
Sbjct: 242 LEFKIPVGKNGDCFDRYLCRIEEMRESVSIIKQCLSKM----EKGPIKSLDGKISPPPKK 297
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
D+K+SME+LIHHFKL+TEGY V E+Y AVEAPKGEFGVYLISDG +KPY+CKIRAPG+
Sbjct: 298 DIKQSMEALIHHFKLFTEGYRVDKDEIYTAVEAPKGEFGVYLISDGTSKPYKCKIRAPGF 357
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+HLQAM++L KGH LADV A+LGSLDIVFGEVDR
Sbjct: 358 SHLQAMDYLIKGHMLADVPAVLGSLDIVFGEVDR 391
>gi|298291844|ref|YP_003693783.1| NADH dehydrogenase I, D subunit [Starkeya novella DSM 506]
gi|296928355|gb|ADH89164.1| NADH dehydrogenase I, D subunit [Starkeya novella DSM 506]
Length = 399
Score = 454 bits (1169), Expect = e-125, Method: Composition-based stats.
Identities = 321/390 (82%), Positives = 354/390 (90%), Gaps = 2/390 (0%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
R+F INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIE KT+LQAVPYFD
Sbjct: 12 RNFQINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIEAKTYLQAVPYFD 71
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYVAPMNQEHA+ L +E+LL IE+P RGQLIRVLYSEIGRILSH+LNVTTQA+DVGAL
Sbjct: 72 RLDYVAPMNQEHAFCLGIERLLDIEVPKRGQLIRVLYSEIGRILSHMLNVTTQALDVGAL 131
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQD+P L+EDI WCD+F ++D
Sbjct: 132 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDLPRALIEDIAAWCDTFGPFMDD 191
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ LLT NRIFKQRNV+IG V LEDA+ WGFSGVM+RGSGAAWDLRKSQPYECY EL+FD
Sbjct: 192 LEGLLTDNRIFKQRNVDIGIVSLEDAFAWGFSGVMVRGSGAAWDLRKSQPYECYDELEFD 251
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
IPIGK+ D YDRY +RM EMR+S KI+RQC +RLL + GPVSA D KIVPPKR +MKR
Sbjct: 252 IPIGKNCDNYDRYCIRMEEMRQSAKIMRQCCDRLLK--ESGPVSAVDNKIVPPKRGEMKR 309
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
SME+LIHHFKLYTEG+HVP GEVYAAVEAPKGEFGVYL++DG NKPYRCKIRAPG+AHLQ
Sbjct: 310 SMEALIHHFKLYTEGFHVPAGEVYAAVEAPKGEFGVYLVADGTNKPYRCKIRAPGFAHLQ 369
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AM+FLC+G+ LADVSAILGSLDIVFGEVDR
Sbjct: 370 AMDFLCRGYMLADVSAILGSLDIVFGEVDR 399
>gi|83951741|ref|ZP_00960473.1| NADH dehydrogenase delta subunit [Roseovarius nubinhibens ISM]
gi|83836747|gb|EAP76044.1| NADH dehydrogenase delta subunit [Roseovarius nubinhibens ISM]
Length = 407
Score = 454 bits (1169), Expect = e-125, Method: Composition-based stats.
Identities = 286/394 (72%), Positives = 337/394 (85%), Gaps = 1/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++K R+F INFGPQHPAAHGVLRL+LELDGEIVER DPHIGLLHRGTEKL+E++T+LQ +
Sbjct: 15 EQKIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNL 74
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYVAPMNQEHA+ LA+EKL G+E+P R LIRVLYSEIGRIL+HLLNVTTQAMD
Sbjct: 75 PYFDRLDYVAPMNQEHAWCLAIEKLTGVEVPRRASLIRVLYSEIGRILNHLLNVTTQAMD 134
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTPPLWGFEEREKLMVFYERA G+R+HAAYFRPGGVHQD+P +L++DI W +FP+
Sbjct: 135 VGALTPPLWGFEEREKLMVFYERACGARLHAAYFRPGGVHQDLPEDLIDDIETWAKAFPN 194
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L DI LLT NRIFKQRN +IG V +D WGFSGVM+RGSG AWDLR++QPYECY E
Sbjct: 195 VLADIDGLLTENRIFKQRNADIGVVTEKDILDWGFSGVMVRGSGLAWDLRRAQPYECYDE 254
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+F +P+GK+GDCYDRYL RM EMR+S+ II Q + +L + G + + KI PPKR
Sbjct: 255 FEFQVPVGKNGDCYDRYLCRMEEMRQSLHIIHQAIEKLRAPDGKGDIL-ARGKITPPKRG 313
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SME+LIHHFKLYTEG+HVP GEVYAAVEAPKGEFGVYL+SDG NKPYR KIRAPG+
Sbjct: 314 EMKTSMEALIHHFKLYTEGFHVPEGEVYAAVEAPKGEFGVYLVSDGSNKPYRSKIRAPGF 373
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQAM+ + GHQLADV+AI+G++D+VFGE+DR
Sbjct: 374 LHLQAMDHVAGGHQLADVAAIIGTMDVVFGEIDR 407
>gi|328775171|gb|AEB39980.1| NADH dehydrogenase subunit 7 [Funaria hygrometrica]
Length = 393
Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats.
Identities = 256/394 (64%), Positives = 318/394 (80%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K+ ++FT+NFGPQHPAAHGVLRL+LE++GE+VER +PHIGLLHRGTEKLIE KT+L+A+
Sbjct: 4 TKQIKNFTLNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLRAL 63
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M QEHAY+LAVEKL E+P+R Q IRVL+ EI RIL+HLL +TT AMD
Sbjct: 64 PYFDRLDYVSMMAQEHAYSLAVEKLCNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMD 123
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTP LW FEEREKL+ FYER SG+RMHA+Y RPGGV QD+P L EDI + F S
Sbjct: 124 VGALTPFLWAFEEREKLLEFYERVSGARMHASYIRPGGVAQDMPLGLSEDIFLFTQQFAS 183
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+++I ++LT NRI+KQR V+IGTV + A WGFSGVM++GSG WDLRKS PY+ Y++
Sbjct: 184 RIDEIEEMLTNNRIWKQRLVDIGTVTAQQALDWGFSGVMLKGSGVCWDLRKSAPYDVYNQ 243
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
L FD+P+G GDCYDRY +R+ EMR+S++II QC+N++ G + A D K+ PP R+
Sbjct: 244 LSFDVPVGTRGDCYDRYCIRIEEMRQSIRIIMQCLNQM----PSGMIKADDRKLCPPSRS 299
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
MK+SMESLIHHFKLYTEG+ VP Y AVEAPKGEFGV+L+S+G N+PYRCKIRAPG+
Sbjct: 300 QMKQSMESLIHHFKLYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGTNRPYRCKIRAPGF 359
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ ++F+ K H LADV I+G+ DIVFGEVDR
Sbjct: 360 AHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 393
>gi|74006138|ref|XP_536138.2| PREDICTED: similar to NADH-ubiquinone oxidoreductase 49 kDa
subunit, mitochondrial precursor (Complex I-49KD)
(CI-49KD) isoform 2 [Canis familiaris]
Length = 463
Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats.
Identities = 249/389 (64%), Positives = 311/389 (79%), Gaps = 4/389 (1%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
+ T+NFGPQHPAAHGVLRL++EL GE+V + DPHIGLLHRGTEKLIE KT+LQA+PYFDR
Sbjct: 79 NLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDR 138
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
LDYV+ M E AY+LAVEKLL I+ P R Q IRVL+ EI R+L+H++ VTT A+D+GA+T
Sbjct: 139 LDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRLLNHIMAVTTHALDIGAMT 198
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
P W FEEREK+ FYER SG+RMHAAY RPGGVHQD+P L++DI + +F ++++
Sbjct: 199 PFFWMFEEREKMFEFYERVSGARMHAAYVRPGGVHQDLPLGLMDDIYEFSKNFSLRVDEL 258
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
++LT NRI+K R V+IG V EDA +GFSGVM+RGSG WDLRK+QPY+ Y ++DFD+
Sbjct: 259 EEMLTNNRIWKNRTVDIGVVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVDFDV 318
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
PIG GDCYDRYL R+ EMR+S++II QC+N++ G + D K+ PPKRA+MK S
Sbjct: 319 PIGSRGDCYDRYLCRVEEMRQSLRIIEQCLNKM----PPGEIKVDDAKVSPPKRAEMKTS 374
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
MESLIHHFKLYTEGY VP G Y A+EAPKGEFGVYL+SDG ++PYRCKI+APG+AHL
Sbjct: 375 MESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAG 434
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 435 LDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
>gi|312383663|gb|EFR28661.1| hypothetical protein AND_03103 [Anopheles darlingi]
Length = 473
Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats.
Identities = 249/394 (63%), Positives = 311/394 (78%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+K R+ ++NFGPQHPAAHGVLRL+LELDGE V R DPHIGLLHRGTEKLIE KT+ QA+
Sbjct: 84 EKTVRNLSLNFGPQHPAAHGVLRLVLELDGETVMRADPHIGLLHRGTEKLIEYKTYTQAL 143
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E Y+LAVEKLL I+IP+R + IRVL+ EI RIL+H++ V T A+D
Sbjct: 144 PYFDRLDYVSMMCNEQCYSLAVEKLLNIDIPLRAKYIRVLFGEITRILNHIMAVGTHALD 203
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTP W FEEREK+M FYER SG+RMHAAY RPGGV QD+P L++DI + F
Sbjct: 204 VGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSQDLPLGLLDDIYEFASKFAE 263
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+++ D+LT NRI+ QR V+IG V EDA +GFSGVM+RGSG WDLRK+QPY+ Y
Sbjct: 264 RLDEVEDVLTTNRIWVQRTVDIGIVSAEDALNYGFSGVMLRGSGIKWDLRKAQPYDAYDR 323
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++FD+PIG GDCYDRYL R+ EMR+S++II QC+N++ G + D K+ PP RA
Sbjct: 324 VEFDVPIGTKGDCYDRYLCRVEEMRQSLRIIDQCLNQMPA----GEIKTDDAKLTPPSRA 379
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SME+LIHHFKL+T+GY VP G Y AVEAPKGEFG+YL+SDG +KPYRCKI+APG+
Sbjct: 380 EMKHSMEALIHHFKLFTQGYQVPPGATYTAVEAPKGEFGIYLVSDGSSKPYRCKIKAPGF 439
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL A++ + + H LADV AI+G+LD+VFGE+DR
Sbjct: 440 AHLAALDKVGRHHMLADVVAIIGTLDVVFGEIDR 473
>gi|261196648|ref|XP_002624727.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Ajellomyces
dermatitidis SLH14081]
gi|239595972|gb|EEQ78553.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Ajellomyces
dermatitidis SLH14081]
gi|239609551|gb|EEQ86538.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Ajellomyces
dermatitidis ER-3]
gi|327350213|gb|EGE79070.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Ajellomyces
dermatitidis ATCC 18188]
Length = 479
Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats.
Identities = 244/393 (62%), Positives = 308/393 (78%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+K R +T+NFGPQHPAAHGVLRLILEL+GE + R DPH+GLLHRGTEKLIE KT+LQA+P
Sbjct: 91 RKVRHYTVNFGPQHPAAHGVLRLILELNGEEIIRADPHVGLLHRGTEKLIEYKTYLQALP 150
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M E ++LAVEKLL +EIP R + IR L+ EI R+L+HL++V + AMDV
Sbjct: 151 YFDRLDYVSMMTNEQCFSLAVEKLLNVEIPERAKWIRTLFGEITRVLNHLMSVLSHAMDV 210
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP LWGFEEREKLM FYER SG+R+HAAY RPGGVHQDIP L++DI W F
Sbjct: 211 GALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPLGLLDDIYQWATQFGDR 270
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ +LLT NRI+K R IG V +A +GF+GVM+RGSG WD+RKSQPY+ Y ++
Sbjct: 271 IDETEELLTDNRIWKARTQGIGVVTAAEALNYGFTGVMLRGSGVPWDVRKSQPYDAYDQV 330
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FD+P+G +GDCYDRYL RM E R+S++II QC+N++ GPV D KI PP +A
Sbjct: 331 EFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNKMPA----GPVRVEDYKISPPPKAA 386
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK +ME+LIHHF L+T+GY VP GE Y+A+EAPKGE GV+L+SDG +PYRCKIRAPG+A
Sbjct: 387 MKENMEALIHHFLLFTKGYAVPPGETYSAIEAPKGEMGVFLVSDGSERPYRCKIRAPGFA 446
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HL + + +GH LAD AI+G++D+VFGEVDR
Sbjct: 447 HLSCFDQVARGHLLADAVAIIGTMDLVFGEVDR 479
>gi|195469361|ref|XP_002099606.1| GE14510 [Drosophila yakuba]
gi|194185707|gb|EDW99318.1| GE14510 [Drosophila yakuba]
Length = 468
Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats.
Identities = 247/394 (62%), Positives = 308/394 (78%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+K R+ T+NFGPQHPAAHGVLRL+LELDGE V R DPHIGLLHRGTEKLIE KT+ QA+
Sbjct: 79 EKSVRNLTLNFGPQHPAAHGVLRLVLELDGETVMRADPHIGLLHRGTEKLIEYKTYTQAL 138
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E Y+LAVEKLL I++P+R + IR L++EI RIL+H++ V T A+D
Sbjct: 139 PYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRILNHIMAVGTHALD 198
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTP W FEEREK+M FYER SG+RMHAAY RPGGV D+P L++DI + F
Sbjct: 199 VGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPIGLMDDIYEFALKFAE 258
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+++ D+LT NRI+ QR +IG V E+A +GFSGVM+RGSG WDLRK QPY+ Y
Sbjct: 259 RLDEVEDVLTTNRIWVQRTEDIGIVTAEEALNYGFSGVMLRGSGIKWDLRKQQPYDAYHL 318
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+DFD+PIG GDCYDRYL R+ EMR+S++II QC+N++ G + D K+ PP R+
Sbjct: 319 VDFDVPIGTKGDCYDRYLCRVEEMRQSLRIIDQCLNQMPA----GEIKTDDAKVAPPSRS 374
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SME+LIHHFKL+T+GY VP G Y A+EAPKGEFGVYLISDG ++PYRCKI+APG+
Sbjct: 375 EMKTSMEALIHHFKLFTQGYQVPPGATYTAIEAPKGEFGVYLISDGSSRPYRCKIKAPGF 434
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL A+E + K H LADV AI+G+LD+VFGE+DR
Sbjct: 435 AHLAALEKIGKQHMLADVVAIIGTLDVVFGEIDR 468
>gi|126729552|ref|ZP_01745365.1| NADH dehydrogenase subunit D [Sagittula stellata E-37]
gi|126709671|gb|EBA08724.1| NADH dehydrogenase subunit D [Sagittula stellata E-37]
Length = 407
Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats.
Identities = 288/394 (73%), Positives = 338/394 (85%), Gaps = 1/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++K R+F INFGPQHPAAHGVLRL+LELDGEIVER DPHIGLLHRGTEKL+E++T+LQ +
Sbjct: 15 EQKIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNL 74
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYVAPMNQEHA+ LA+E+L G+E+P R LIRVLYSEIGR+L+HLLNVTTQAMD
Sbjct: 75 PYFDRLDYVAPMNQEHAWCLAIERLTGVEVPRRASLIRVLYSEIGRVLNHLLNVTTQAMD 134
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTPPLWGFEEREKLM+FYERA G+R+H+AYFRPGGVHQD+PP+L++DI W FP+
Sbjct: 135 VGALTPPLWGFEEREKLMIFYERACGARLHSAYFRPGGVHQDLPPKLIDDIEQWAKEFPA 194
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+DI LLT NRIFKQRN +IG V ++ WGFSGVM+RGSG AWDLR++QPYECY E
Sbjct: 195 KLDDIDGLLTENRIFKQRNADIGVVTEQEILDWGFSGVMVRGSGLAWDLRRAQPYECYDE 254
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF IP+GK+GDCYDRYL RM EMRES KII Q V +L + G V + K+ PPKR
Sbjct: 255 FDFKIPVGKNGDCYDRYLCRMAEMRESTKIILQAVEKLRAPDGQGDVL-ARGKVTPPKRD 313
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SME+LIHHFKLYTEG+HVP GEVYAAVEAPKGEFGVYL++DG NKPYR K+RAPGY
Sbjct: 314 EMKTSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKGEFGVYLVADGTNKPYRAKLRAPGY 373
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQAM+ + GHQLADV+AI+G++DIVFGEVDR
Sbjct: 374 LHLQAMDHVASGHQLADVAAIIGTMDIVFGEVDR 407
>gi|154253662|ref|YP_001414486.1| NADH dehydrogenase I subunit D [Parvibaculum lavamentivorans DS-1]
gi|218534437|sp|A7HY46|NUOD_PARL1 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|154157612|gb|ABS64829.1| NADH dehydrogenase I, D subunit [Parvibaculum lavamentivorans DS-1]
Length = 392
Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats.
Identities = 303/396 (76%), Positives = 350/396 (88%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M +++ R++ +NFGPQHPAAHGVLRL+LELDGE+VERVDPHIGLLHRGTEKLIE KT+LQ
Sbjct: 1 MAEQELRNYHLNFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEYKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A PYFDRLDYVAPMNQEHA+ LA E+LLG+E+P R Q IRVLYSEIGRIL+HLLNVTTQA
Sbjct: 61 ATPYFDRLDYVAPMNQEHAFVLAAERLLGLEVPRRAQFIRVLYSEIGRILAHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLM+FYERASG+R+HA YFR GGVH+D+PP+L+EDI +CD
Sbjct: 121 MDVGALTPPLWGFEEREKLMIFYERASGARLHANYFRTGGVHRDLPPKLLEDIYNFCDPC 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L+D+ L+T NRIFKQRNV+IG V E+A WGFSGVM+RGSG AWDLR++QPYE Y
Sbjct: 181 SQVLDDLEGLITDNRIFKQRNVDIGVVSQEEALEWGFSGVMVRGSGMAWDLRRAQPYEVY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
SELDFDIP+GK+GDCYDRYL RM EMR+S++I++QC+ + G GPV D K+VPP
Sbjct: 241 SELDFDIPVGKNGDCYDRYLCRMEEMRQSLRIMKQCIELMPG----GPVHVLDGKVVPPS 296
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R++MKRSME+LIHHFKLYTEGYHVP GEVYAAVEAPKGEFGVYL+SDGGNKPY+CKIRAP
Sbjct: 297 RSEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYLVSDGGNKPYKCKIRAP 356
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GYAHLQAM+ LCKGH LADVSAILGS+DIVFGEVDR
Sbjct: 357 GYAHLQAMDHLCKGHMLADVSAILGSIDIVFGEVDR 392
>gi|195354391|ref|XP_002043681.1| GM26777 [Drosophila sechellia]
gi|194128869|gb|EDW50912.1| GM26777 [Drosophila sechellia]
Length = 468
Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats.
Identities = 245/394 (62%), Positives = 308/394 (78%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+K R+ T+NFGPQHPAAHGVLRL+LELDGE V R DPHIGLLHRGTEKLIE KT+ QA+
Sbjct: 79 EKSVRNLTLNFGPQHPAAHGVLRLVLELDGETVMRADPHIGLLHRGTEKLIEYKTYTQAL 138
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E Y+LAVEKLL I++P+R + IR L++EI RIL+H++ V T A+D
Sbjct: 139 PYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRILNHIMAVGTHALD 198
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTP W FEEREK+M FYER SG+RMHAAY RPGGV D+P L++DI + F
Sbjct: 199 VGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFASKFSE 258
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+++ D+LT NRI+ QR +IG V ++A +GFSGVM+RGSG WDLRK QPY+ Y
Sbjct: 259 RLDEVEDVLTTNRIWVQRTEDIGIVTADEALNYGFSGVMLRGSGIKWDLRKQQPYDAYHL 318
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++FD+PIG GDCYDRYL R+ EMR+S++II QC+N++ G + D K+ PP R+
Sbjct: 319 VNFDVPIGTKGDCYDRYLCRVEEMRQSLRIIDQCLNQMPA----GEIKTDDAKVAPPSRS 374
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SME+LIHHFKL+T+GY VP G Y A+EAPKGEFGVYLISDG ++PYRCKI+APG+
Sbjct: 375 EMKTSMEALIHHFKLFTQGYQVPPGTTYTAIEAPKGEFGVYLISDGSSRPYRCKIKAPGF 434
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL A+E + K H LADV AI+G+LD+VFGE+DR
Sbjct: 435 AHLAALEKIGKQHMLADVVAIIGTLDVVFGEIDR 468
>gi|316974504|gb|EFV57990.1| NADH dehydrogenase I, D subunit [Trichinella spiralis]
Length = 1482
Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats.
Identities = 244/392 (62%), Positives = 308/392 (78%), Gaps = 4/392 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++K + +NFGPQHPAAHGVLRL+LELD EI+ R PHIGLLHR TEKLIE KT+ QA+
Sbjct: 89 ERKVENMILNFGPQHPAAHGVLRLMLELDAEIILRAVPHIGLLHRATEKLIEYKTYTQAL 148
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M EHA++LAVEKLL +E+P R + IRVL++E+ RIL+H+L +TT A+D
Sbjct: 149 PYFDRLDYVSMMCNEHAFSLAVEKLLAVEVPPRAKWIRVLFAELTRILNHILGITTHALD 208
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP W FEEREKLM FYER+SG+RMHA Y RPGGV DIP L++DI W F +
Sbjct: 209 VGAMTPLFWLFEEREKLMEFYERSSGARMHANYIRPGGVAVDIPLGLLDDIHAWASGFSA 268
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+++ D+LT +R++KQR ++IG V E+A WGFSGVM+RGSG WD+RK++PYE Y +
Sbjct: 269 RLDEVEDVLTESRLWKQRTIDIGVVTAENALNWGFSGVMLRGSGIKWDIRKTEPYEVYDQ 328
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++FD+PIG GDCYDRYLVRM EMR+S++II QC+NR+ G V D K+VPPKR+
Sbjct: 329 IEFDVPIGTKGDCYDRYLVRMEEMRQSLRIIDQCLNRMPA----GEVKVDDHKLVPPKRS 384
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MKR MESLIHHFK +TEGY VP G Y EAPKGEFGVYL+SDG +KPYRC IRAPG+
Sbjct: 385 EMKRDMESLIHHFKFFTEGYSVPPGCTYVPTEAPKGEFGVYLVSDGSSKPYRCYIRAPGF 444
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEV 394
AHL +E + K H +AD+ AI+G+LD+VFGE
Sbjct: 445 AHLSMVEPISKYHFIADLVAIIGTLDVVFGEC 476
>gi|24638644|ref|NP_651926.1| CG1970 [Drosophila melanogaster]
gi|22759353|gb|AAF59336.2| CG1970 [Drosophila melanogaster]
gi|189182170|gb|ACD81861.1| LD47962p [Drosophila melanogaster]
Length = 468
Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats.
Identities = 246/394 (62%), Positives = 309/394 (78%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+K R+ T+NFGPQHPAAHGVLRL+LELDGE V R DPHIGLLHRGTEKLIE KT+ QA+
Sbjct: 79 EKSVRNLTLNFGPQHPAAHGVLRLVLELDGETVMRADPHIGLLHRGTEKLIEYKTYTQAL 138
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E Y+LAVEKLL I++P+R + IR L++EI RIL+H++ V T A+D
Sbjct: 139 PYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRILNHIMAVGTHALD 198
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTP W FEEREK+M FYER SG+RMHAAY RPGGV D+P L++DI + F
Sbjct: 199 VGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFASKFAE 258
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+++ D+LT NRI+ QR +IG V E+A +GFSGVM+RGSG WDLRK QPY+ Y+
Sbjct: 259 RLDEVEDVLTTNRIWVQRTEDIGIVTAEEALNYGFSGVMLRGSGIKWDLRKQQPYDAYNL 318
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++FD+PIG GDCYDRYL R+ EMR+S++II QC+N++ G + D K+ PP R+
Sbjct: 319 VNFDVPIGTKGDCYDRYLCRVEEMRQSLRIIDQCLNQMPA----GEIKTDDAKVAPPSRS 374
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SME+LIHHFKL+T+GY VP G Y A+EAPKGEFGVYLISDG ++PYRCKI+APG+
Sbjct: 375 EMKTSMEALIHHFKLFTQGYQVPPGATYTAIEAPKGEFGVYLISDGSSRPYRCKIKAPGF 434
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL A+E + K H LADV AI+G+LD+VFGE+DR
Sbjct: 435 AHLAALEKIGKQHMLADVVAIIGTLDVVFGEIDR 468
>gi|301786741|ref|XP_002928779.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial-like [Ailuropoda melanoleuca]
Length = 463
Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats.
Identities = 246/389 (63%), Positives = 311/389 (79%), Gaps = 4/389 (1%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
+ T+NFGPQHPAAHGVLRL++EL GE+V + DPHIGLLHRGTEKLIE KT+LQA+PYFDR
Sbjct: 79 NLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDR 138
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
LDYV+ M E AY+LAVEKLL I+ P R Q IRVL+ EI R+L+H++ VTT A+D+GA+T
Sbjct: 139 LDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRLLNHIMAVTTHALDIGAMT 198
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
P W FEEREK+ FYER SG+RMHAAY RPGGVHQD+P L++DI + +F ++++
Sbjct: 199 PFFWMFEEREKMFEFYERVSGARMHAAYVRPGGVHQDLPLGLLDDIYEFSKNFSLRVDEL 258
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
++LT NRI++ R V+IG V EDA +GFSGVM+RGSG WDLRK+QPY+ Y +++FD+
Sbjct: 259 EEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDV 318
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
P+G GDCYDRYL R+ EMR+S++II QC+N++ G + D K+ PPKRA+MK S
Sbjct: 319 PVGSRGDCYDRYLCRVEEMRQSLRIIEQCLNKM----PPGEIKVDDAKVSPPKRAEMKTS 374
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
MESLIHHFKLYTEGY VP G Y A+EAPKGEFGVYL+SDG ++PYRCKI+APG+AHL
Sbjct: 375 MESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAG 434
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 435 LDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
>gi|167646795|ref|YP_001684458.1| NADH dehydrogenase subunit D [Caulobacter sp. K31]
gi|218534396|sp|B0SZ49|NUOD_CAUSK RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|167349225|gb|ABZ71960.1| NADH dehydrogenase I, D subunit [Caulobacter sp. K31]
Length = 416
Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats.
Identities = 290/396 (73%), Positives = 340/396 (85%), Gaps = 2/396 (0%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + R F INFGPQHPAAHGVLRL+LELDGEIVERVDPHIGLLHRGTEKL+E +T+LQ
Sbjct: 23 VPETPVRKFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLMEARTYLQ 82
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PYFDRLDYVAPMNQEHA+ LA+EKLLG+++P+RG LIRVL+ EIGR+L+HLLNVTTQA
Sbjct: 83 NIPYFDRLDYVAPMNQEHAFCLAIEKLLGVDVPLRGSLIRVLFCEIGRVLNHLLNVTTQA 142
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLMVFYERA G+R+HA YFRPGGVHQD+ P L++DI W +F
Sbjct: 143 MDVGALTPPLWGFEEREKLMVFYERACGARLHANYFRPGGVHQDLTPSLIDDIEKWAKAF 202
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P +DI L+T NRIFKQRNV+IG V EDA WGFSGVM+RGSG AWDLR++QPYECY
Sbjct: 203 PKICDDIEGLITDNRIFKQRNVDIGVVTKEDALAWGFSGVMVRGSGIAWDLRRNQPYECY 262
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
++ +FDIP+GK+GDCYDRYL RM EMRES KII Q + +L GPV D K+ PP+
Sbjct: 263 NDFEFDIPLGKNGDCYDRYLCRMQEMRESTKIILQAIEKLRATP--GPVMTQDNKVAPPR 320
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
RA+MKRSME+LIHHFKLYTEG+ P GEVYA VEAPKGEFGV+L+S+G NKPYRCKI+AP
Sbjct: 321 RAEMKRSMEALIHHFKLYTEGFRTPEGEVYACVEAPKGEFGVFLVSNGTNKPYRCKIKAP 380
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G++HL AM+++ +GHQLADVSAILGSLDIVFGEVDR
Sbjct: 381 GFSHLAAMDWMNRGHQLADVSAILGSLDIVFGEVDR 416
>gi|45361573|ref|NP_989363.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [Xenopus (Silurana)
tropicalis]
gi|39850016|gb|AAH64276.1| hypothetical protein MGC76312 [Xenopus (Silurana) tropicalis]
gi|89273935|emb|CAJ81740.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [Xenopus (Silurana)
tropicalis]
Length = 459
Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats.
Identities = 251/394 (63%), Positives = 313/394 (79%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+K + TINFGPQHPAAHGVLRL++EL GE V+R DPHIGLLHRGTEKLIE KT+LQA+
Sbjct: 70 EKTVSNLTINFGPQHPAAHGVLRLVMELSGESVKRCDPHIGLLHRGTEKLIEYKTYLQAL 129
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E AY+LAVEKLL I+ P R Q IRVL+ EI RIL+H++ VT A+D
Sbjct: 130 PYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRILNHIMAVTCHALD 189
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA+TP W FEEREK+ FYER SG+RMHAAY RPGGVHQD+P L++DI + +F
Sbjct: 190 IGAMTPFFWMFEEREKMFEFYERVSGARMHAAYVRPGGVHQDMPLGLMDDIYEFIKNFSI 249
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++++ ++LT NRI+K R V+IG V EDA +GFSGVM+RGSG WDLRKSQPY+ Y +
Sbjct: 250 RVDEVEEMLTNNRIWKNRTVDIGVVSAEDALNYGFSGVMLRGSGIQWDLRKSQPYDVYDQ 309
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++FD+PIG GDCYDRYL R+ EMR+S++II QC+N++ G + D K+ PPKR+
Sbjct: 310 VEFDVPIGSRGDCYDRYLCRVEEMRQSMRIILQCLNKM----PEGEIKVDDAKVSPPKRS 365
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MKRSMESLIHHFKLYTEGY VP G Y A+EAPKGEFGVYL+SDG ++PYRCKI+APG+
Sbjct: 366 EMKRSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGF 425
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL ++ + +GH LADV AI+G+ DIVFGEVDR
Sbjct: 426 AHLAGLDKMSQGHMLADVVAIIGTQDIVFGEVDR 459
>gi|156379389|ref|XP_001631440.1| predicted protein [Nematostella vectensis]
gi|156218480|gb|EDO39377.1| predicted protein [Nematostella vectensis]
Length = 412
Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats.
Identities = 263/396 (66%), Positives = 322/396 (81%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ +K + TINFGPQHPAAHGVLRL+LELDGE+V R DPHIGLLHRGTEKLIE KT+LQ
Sbjct: 21 IPEKGVTNMTINFGPQHPAAHGVLRLVLELDGEVVVRADPHIGLLHRGTEKLIEYKTYLQ 80
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+ M E AY+LAVEKLL I+IP R + IRVL+ EI R+L+H++ VTT A
Sbjct: 81 ALPYFDRLDYVSMMTNEQAYSLAVEKLLNIDIPERAKWIRVLFGEITRLLNHIMGVTTHA 140
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+DVGA+TP W FEEREKLM FYER SG+RMHAAY RPGGV QD+P L++DI + +F
Sbjct: 141 LDVGAMTPFFWMFEEREKLMEFYERVSGARMHAAYVRPGGVSQDMPLGLMDDIYQFIQTF 200
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P L+D+ ++LT NRI+KQR V+IG V +EDA +GFSGVM+RGSG WDLRK+QPY+ Y
Sbjct: 201 PQRLDDVEEMLTNNRIWKQRTVDIGVVSVEDALNYGFSGVMLRGSGIKWDLRKAQPYDRY 260
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+++FD+PIGK+GDCYDRYL RM EMRES+KII QC+N++ G + D KI PPK
Sbjct: 261 DQVEFDVPIGKNGDCYDRYLCRMEEMRESLKIILQCLNKM----PPGEIKVDDAKISPPK 316
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R++MK SMESLIHHFKLYTEGY VP G Y A+EAPKGEFGVYL++DG +KPYRCKI+AP
Sbjct: 317 RSEMKDSMESLIHHFKLYTEGYQVPPGGTYTAIEAPKGEFGVYLVADGTSKPYRCKIKAP 376
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHL +F+ KGH LADV A++G+LD+VFGEVDR
Sbjct: 377 GFAHLAGTDFITKGHMLADVVAVIGTLDVVFGEVDR 412
>gi|229586621|ref|YP_002845122.1| NADH dehydrogenase subunit D [Rickettsia africae ESF-5]
gi|228021671|gb|ACP53379.1| NADH dehydrogenase I chain D [Rickettsia africae ESF-5]
Length = 422
Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats.
Identities = 255/394 (64%), Positives = 311/394 (78%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ T+N GPQHPA HGVLRLILE+DGE+V DPHIGLLHRGTEKLIE KT+LQA+
Sbjct: 33 TNNTKTITLNLGPQHPATHGVLRLILEMDGEVVNNADPHIGLLHRGTEKLIEHKTYLQAI 92
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+PM QEHA+ALAVE LL E+P R Q IRVL+SE+ RIL+H LN+ +QA+D
Sbjct: 93 PYFDRLDYVSPMCQEHAFALAVESLLECEVPRRAQFIRVLFSELTRILNHTLNIGSQALD 152
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA TP LW FEEREK+M FYE SGSRMH+ YFRPGGV D+P L+EDI + + FP
Sbjct: 153 IGATTPLLWLFEEREKIMEFYEHVSGSRMHSNYFRPGGVAADLPEGLLEDIDKFIEQFPP 212
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+DI LL NR++KQR V+IG ++A WGFSG M+RGSG AWDLRKS PY+ Y E
Sbjct: 213 KLHDIESLLNENRLWKQRLVDIGVASQKEAMDWGFSGPMLRGSGIAWDLRKSNPYDVYDE 272
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+DF +PIGK+GDCYDRY VRM+EM ES+KII+QC+ ++ G + DPK+ PP RA
Sbjct: 273 MDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQCIEKM----PKGAIKTDDPKLTPPTRA 328
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
MK SME++IHHFKLYTEGY VP GE Y AVEAPKGEFGVYL S GGN+PYRC+I+APG+
Sbjct: 329 KMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGEFGVYLYSQGGNRPYRCRIKAPGF 388
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ ++F+ KGH +ADV I+ +LDIVFGE+DR
Sbjct: 389 AHLQGLDFMSKGHLMADVITIIATLDIVFGEIDR 422
>gi|259418627|ref|ZP_05742544.1| NADH dehydrogenase (quinone), d subunit [Silicibacter sp.
TrichCH4B]
gi|259344849|gb|EEW56703.1| NADH dehydrogenase (quinone), d subunit [Silicibacter sp.
TrichCH4B]
Length = 405
Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats.
Identities = 289/394 (73%), Positives = 339/394 (86%), Gaps = 3/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++K R+F INFGPQHPAAHGVLRL+LELDGEIVER DPHIGLLHRGTEKL+E++T+LQ +
Sbjct: 15 EQKIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNL 74
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYVAPMNQEHA+ LA+EKL G+E+P R QLIRVLYSEIGRIL+HLLNVTTQAMD
Sbjct: 75 PYFDRLDYVAPMNQEHAWCLAIEKLTGVEVPRRAQLIRVLYSEIGRILNHLLNVTTQAMD 134
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTPPLWGFEEREKLM+FYERA G+R+HAAYFRPGGVHQD+P EL++DI W FP
Sbjct: 135 VGALTPPLWGFEEREKLMIFYERACGARLHAAYFRPGGVHQDLPDELLDDIDLWAMEFPK 194
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++DI LLT NRIFKQRN +IG V +D +GFSGVM+RGSG AWDLR++QPYECY E
Sbjct: 195 VIDDIDGLLTENRIFKQRNCDIGVVTEDDIQKYGFSGVMVRGSGLAWDLRRAQPYECYDE 254
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+F IP+GK+GDCYDRYLVRM EMR+S+ IIRQ + +L + KI PPKR+
Sbjct: 255 FEFQIPVGKNGDCYDRYLVRMEEMRQSLSIIRQAIAKLREATGDV---MARGKISPPKRS 311
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
DMK SMESLIHHFKLYTEG+HVP GEVYAAVEAPKGEFGVYL++DG NKPYR K+RAPG+
Sbjct: 312 DMKTSMESLIHHFKLYTEGFHVPEGEVYAAVEAPKGEFGVYLVADGTNKPYRAKLRAPGF 371
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQAM+++ KGHQLADV+AI+G++DIVFGE+DR
Sbjct: 372 LHLQAMDYVAKGHQLADVAAIIGTMDIVFGEIDR 405
>gi|15619556|gb|AAL03020.1| NADH dehydrogenase I chain D [Rickettsia conorii str. Malish 7]
Length = 422
Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats.
Identities = 255/394 (64%), Positives = 311/394 (78%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ T+N GPQHPA HGVLRLILE+DGE+V DPHIGLLHRGTEKLIE KT+LQA+
Sbjct: 33 TNNTKTITLNIGPQHPATHGVLRLILEMDGEVVNNADPHIGLLHRGTEKLIEHKTYLQAI 92
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+PM QEHA+ALAVE LL E+P R Q IRVL+SE+ RIL+H LN+ +QA+D
Sbjct: 93 PYFDRLDYVSPMCQEHAFALAVESLLECEVPRRAQFIRVLFSELTRILNHTLNIGSQALD 152
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA TP LW FEEREK+M FYE SGSRMH+ YFRPGGV D+P L+EDI + + FP
Sbjct: 153 IGATTPLLWLFEEREKIMEFYEHVSGSRMHSNYFRPGGVAADLPEGLLEDIDKFIEQFPP 212
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+DI LL NR++KQR V+IG ++A WGFSG M+RGSG AWDLRKS PY+ Y E
Sbjct: 213 KLHDIESLLNENRLWKQRLVDIGVASQKEAMDWGFSGPMLRGSGIAWDLRKSNPYDVYDE 272
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+DF +PIGK+GDCYDRY VRM+EM ES+KII+QC+ ++ G + DPK+ PP RA
Sbjct: 273 MDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQCIEKM----PKGAIKTDDPKLTPPTRA 328
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
MK SME++IHHFKLYTEGY VP GE Y AVEAPKGEFGVYL S GGN+PYRC+I+APG+
Sbjct: 329 KMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGEFGVYLYSQGGNRPYRCRIKAPGF 388
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ ++F+ KGH +ADV I+ +LDIVFGE+DR
Sbjct: 389 AHLQGLDFMSKGHLMADVITIIATLDIVFGEIDR 422
>gi|149202671|ref|ZP_01879643.1| NADH dehydrogenase delta subunit [Roseovarius sp. TM1035]
gi|149143953|gb|EDM31987.1| NADH dehydrogenase delta subunit [Roseovarius sp. TM1035]
Length = 406
Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats.
Identities = 283/394 (71%), Positives = 338/394 (85%), Gaps = 1/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++K R+F INFGPQHPAAHGVLRL+LELDGE+VER DPHIGLLHRGTEKL+E++T+LQ +
Sbjct: 14 EQKIRNFNINFGPQHPAAHGVLRLVLELDGELVERCDPHIGLLHRGTEKLMESRTYLQNL 73
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYVAPMNQEHA+ LA+EKL G+E+P R LIRVLY EIGR+L+HLLNVTTQAMD
Sbjct: 74 PYFDRLDYVAPMNQEHAWCLAIEKLTGVEVPRRASLIRVLYCEIGRVLNHLLNVTTQAMD 133
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTPPLWGFEEREKLMVFYERA G+R+HAAYFRPGGVHQD+PP L++DI W + FP
Sbjct: 134 VGALTPPLWGFEEREKLMVFYERACGARLHAAYFRPGGVHQDLPPALIDDIETWANEFPR 193
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+DI LLT NRIFKQRN +IG + ++A WGFSGVM+RGSG AWDLR++QPYECY E
Sbjct: 194 VLDDIDGLLTENRIFKQRNADIGIISQQEALDWGFSGVMVRGSGMAWDLRRAQPYECYDE 253
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF IP+GK+GDCYDRYL RM EMR+S++II Q + +L G + + KI PP RA
Sbjct: 254 FDFLIPVGKNGDCYDRYLCRMEEMRQSLRIIHQAIAKLRAPEGQGDIL-ARGKITPPARA 312
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MKRSME+LIHHFKLYTEG+ VP GEVYAAVEAPKGEFGVYL++DG N+PYR K+RAPG+
Sbjct: 313 EMKRSMEALIHHFKLYTEGFRVPEGEVYAAVEAPKGEFGVYLVADGTNRPYRAKLRAPGF 372
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQAM+ + KGHQLADV+AI+G++D+VFGE+DR
Sbjct: 373 LHLQAMDHVAKGHQLADVAAIIGTMDVVFGEIDR 406
>gi|110680467|ref|YP_683474.1| NADH dehydrogenase subunit D [Roseobacter denitrificans OCh 114]
gi|122972619|sp|Q163Q5|NUOD_ROSDO RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|109456583|gb|ABG32788.1| NADH-quinone oxidoreductase chain D [Roseobacter denitrificans OCh
114]
Length = 407
Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats.
Identities = 286/394 (72%), Positives = 335/394 (85%), Gaps = 1/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++K R+F INFGPQHPAAHGVLRL+LELDGEIVER DPHIGLLHRGTEKL+E++T+LQ +
Sbjct: 15 EQKIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNL 74
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYVAPMNQEHA+ LA+EKL G+E+P R LIRVL+ EIGRIL+H+LN+TTQAMD
Sbjct: 75 PYFDRLDYVAPMNQEHAWCLAIEKLTGVEVPRRASLIRVLFCEIGRILNHILNITTQAMD 134
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTPPLWGFEEREKLMVFYERASG+R+HAAYFRPGGVHQD+PP L++DI W FP
Sbjct: 135 VGALTPPLWGFEEREKLMVFYERASGARLHAAYFRPGGVHQDLPPALIDDIETWAHEFPR 194
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++DI LLT NRIFKQRN +IG V ED +GFSGVM+RGSG AWDLR++QPYE Y E
Sbjct: 195 VIDDIDGLLTENRIFKQRNADIGVVTEEDILEYGFSGVMVRGSGLAWDLRRAQPYERYDE 254
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF IPIGK+GDCYDRYLVRM EMR+S+ II Q + +L G V + KI PP R+
Sbjct: 255 FDFQIPIGKNGDCYDRYLVRMEEMRQSLSIILQAIAKLRAPEGQGDVL-ARGKITPPSRS 313
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
DMK SMESLIHHFKLYTEG+HVP GEVYA VEAPKGEFGVYL++DG NKPYR KIRAPG+
Sbjct: 314 DMKTSMESLIHHFKLYTEGFHVPAGEVYACVEAPKGEFGVYLVADGTNKPYRAKIRAPGF 373
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQAM+ + +GHQLADV+AI+G++D+VFGE+DR
Sbjct: 374 LHLQAMDHMSRGHQLADVAAIIGTMDVVFGEIDR 407
>gi|154248549|ref|YP_001419507.1| NADH dehydrogenase I, D subunit [Xanthobacter autotrophicus Py2]
gi|218546715|sp|A7IPA4|NUOD_XANP2 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|154162634|gb|ABS69850.1| NADH dehydrogenase I, D subunit [Xanthobacter autotrophicus Py2]
Length = 402
Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats.
Identities = 324/392 (82%), Positives = 356/392 (90%), Gaps = 2/392 (0%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K R+F INFGPQHPAAHGVLRL+LELDGE+VERVDPHIGLLHRGTEKLIE KT+LQAVPY
Sbjct: 13 KVRNFQINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEAKTYLQAVPY 72
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
FDRLDY APMNQEHA+ LA EKLLGIE+P RGQLIRVLYSEIGR+LSHLLNVTT AMDVG
Sbjct: 73 FDRLDYCAPMNQEHAFCLAAEKLLGIEVPKRGQLIRVLYSEIGRLLSHLLNVTTFAMDVG 132
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
ALTPPLWGFEEREKLM+FYERASGSRMHAAYFRPGGVHQD+P LVEDIG +CD F L
Sbjct: 133 ALTPPLWGFEEREKLMIFYERASGSRMHAAYFRPGGVHQDLPRALVEDIGAFCDPFLKLL 192
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+D+ L+T NRIFKQR V+IG V LEDA WGFSGVM+RGSGAAWDLR++QPYECYSELD
Sbjct: 193 DDLDGLVTENRIFKQRTVDIGVVSLEDALAWGFSGVMVRGSGAAWDLRRAQPYECYSELD 252
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDIPIGKHGDCYDRY+VRM EMR+S KI++QCV RLL + GPVS +D KIVPPKR +M
Sbjct: 253 FDIPIGKHGDCYDRYVVRMEEMRQSTKIMKQCVERLLK--EAGPVSTTDNKIVPPKRGEM 310
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
KRSME+LIHHFKLYTEG+HVP G+VYAAVEAPKGEFGVYL+SDG NKPYRCKIRAPG+AH
Sbjct: 311 KRSMEALIHHFKLYTEGFHVPAGDVYAAVEAPKGEFGVYLVSDGTNKPYRCKIRAPGFAH 370
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
LQAM+FLC+GH LADVSA+LGSLDIVFGEVDR
Sbjct: 371 LQAMDFLCRGHMLADVSAVLGSLDIVFGEVDR 402
>gi|295689626|ref|YP_003593319.1| NADH dehydrogenase I subunit D [Caulobacter segnis ATCC 21756]
gi|295431529|gb|ADG10701.1| NADH dehydrogenase I, D subunit [Caulobacter segnis ATCC 21756]
Length = 416
Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats.
Identities = 297/396 (75%), Positives = 343/396 (86%), Gaps = 2/396 (0%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + R F INFGPQHPAAHGVLRL+LELDGEIVERVDPHIGLLHRGTEKL+E +T+LQ
Sbjct: 23 IPETPVRKFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLMEARTYLQ 82
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PYFDRLDYVAPMNQEHA+ LA+EKLLG+E+PIRGQ+IRVLYSEIGRIL+HLLNVTTQA
Sbjct: 83 NIPYFDRLDYVAPMNQEHAFCLAIEKLLGVEVPIRGQIIRVLYSEIGRILNHLLNVTTQA 142
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLMVFYERA G+R+H+ YFRPGGVHQD+PPEL+EDI W +F
Sbjct: 143 MDVGALTPPLWGFEEREKLMVFYERACGARLHSNYFRPGGVHQDLPPELIEDIDAWAKAF 202
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P +DI L+T NRIFKQRNV+IG V E+A WGFSGVM+RGSG AWDLR+SQPYE Y
Sbjct: 203 PKICDDIEGLITDNRIFKQRNVDIGVVTKEEAIDWGFSGVMVRGSGIAWDLRRSQPYENY 262
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
++ +FDIP+GK+GDCYDRYL RM EMRES KIIRQ L + GPV + D K+ PP+
Sbjct: 263 NDFEFDIPLGKNGDCYDRYLCRMQEMRESTKIIRQACEML--RKTHGPVLSEDNKVSPPR 320
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
RA+MKRSME+LIHHFKLYTEG+ P GEVYA VEAPKGEFGV+++SDG NKPYRCKIRAP
Sbjct: 321 RAEMKRSMEALIHHFKLYTEGFKTPEGEVYACVEAPKGEFGVFVVSDGTNKPYRCKIRAP 380
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ HL AM+++ +GHQLADVSAILGSLDIVFGE+DR
Sbjct: 381 GFPHLAAMDWMNRGHQLADVSAILGSLDIVFGEIDR 416
>gi|195402219|ref|XP_002059704.1| GJ13840 [Drosophila virilis]
gi|194155918|gb|EDW71102.1| GJ13840 [Drosophila virilis]
gi|263359639|gb|ACY70475.1| hypothetical protein DVIR88_6g0012 [Drosophila virilis]
Length = 468
Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats.
Identities = 245/394 (62%), Positives = 306/394 (77%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+K R+ T+NFGPQHPAAHGVLRL+LELDGE V R DPHIGLLHRGTEKLIE KT+ QA+
Sbjct: 79 EKSVRNLTLNFGPQHPAAHGVLRLVLELDGETVMRADPHIGLLHRGTEKLIEYKTYTQAL 138
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E Y+LAVEKLL IE+P+R + IR L++EI RIL+H++ V T A+D
Sbjct: 139 PYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYIRTLFAEITRILNHIMAVGTHALD 198
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTP W FEEREK+M FYER SG+RMHAAY RPGGV D+P L+ DI + F
Sbjct: 199 VGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMNDIYEFASKFAE 258
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+++ D+L+ NRI+ QR +IG V E+A +GFSGVM+RGSG WDLRK QPY+ Y
Sbjct: 259 RLDEVEDVLSTNRIWVQRTEDIGIVSAEEALNYGFSGVMLRGSGIKWDLRKQQPYDAYHL 318
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+DFD+PIG GDCYDRYL R+ EMR+S++II QC+N++ G + D K+ P R+
Sbjct: 319 VDFDVPIGTKGDCYDRYLCRIEEMRQSLRIIDQCLNQMPA----GEIKTDDAKVTTPTRS 374
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SME+LIHHFKL+++GY VP G Y A+EAPKGEFGVYLISDG ++PYRCKI+APG+
Sbjct: 375 EMKTSMEALIHHFKLFSQGYPVPPGATYTAIEAPKGEFGVYLISDGSSRPYRCKIKAPGF 434
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL A+E + K H LADV AI+G+LD+VFGE+DR
Sbjct: 435 AHLAALEKIGKQHMLADVVAIIGTLDVVFGEIDR 468
>gi|195172536|ref|XP_002027053.1| GL18172 [Drosophila persimilis]
gi|194112831|gb|EDW34874.1| GL18172 [Drosophila persimilis]
Length = 452
Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats.
Identities = 244/394 (61%), Positives = 308/394 (78%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+K R+ T+NFGPQHPAAHGVLRL+LELDGE V R DPHIGLLHRGTEKLIE KT+ QA+
Sbjct: 63 EKSVRNLTLNFGPQHPAAHGVLRLVLELDGETVMRADPHIGLLHRGTEKLIEYKTYTQAL 122
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E Y+LAVEKLL I++P+R + IR L++EI RIL+H++ V T A+D
Sbjct: 123 PYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRILNHIMAVGTHALD 182
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTP W FEEREK+M FYER SG+RMHAAY RPGGV D+P L++DI + F
Sbjct: 183 VGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPIGLMDDIYEFASKFAE 242
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+++ D+L+ NRI+ QR +IG V E+A +GFSGVM+RGSG WDLRK QPY+ Y
Sbjct: 243 RLDEVEDVLSTNRIWVQRTEDIGIVTAEEALNYGFSGVMLRGSGIKWDLRKQQPYDAYHL 302
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+DFD+PIG GDCYDRYL R+ EMR+S++II QC+N++ G + D K+ PP R+
Sbjct: 303 VDFDVPIGTKGDCYDRYLCRIEEMRQSLRIIDQCLNQMPA----GEIKTDDAKVTPPSRS 358
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SME+LIHHFKL+T+G+ VP G Y A+EAPKGEFGVYL+SDG ++PYRCKI+APG+
Sbjct: 359 EMKTSMEALIHHFKLFTQGFQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGF 418
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL A+E + K H LADV AI+G+LD+VFGE+DR
Sbjct: 419 AHLAALEKIGKQHMLADVVAIIGTLDVVFGEIDR 452
>gi|302414534|ref|XP_003005099.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Verticillium
albo-atrum VaMs.102]
gi|261356168|gb|EEY18596.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Verticillium
albo-atrum VaMs.102]
Length = 472
Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats.
Identities = 241/396 (60%), Positives = 306/396 (77%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
++ KK R +T+NFGPQHPAAHGVLRLILE++GE + R DPH+GLLHRGTEKLIE KT+LQ
Sbjct: 81 IEDKKVRHYTVNFGPQHPAAHGVLRLILEINGEEIVRADPHVGLLHRGTEKLIEYKTYLQ 140
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+ M E ++LAVEKLL IEIP R + IR L+ E+ R+L+HL++V + A
Sbjct: 141 ALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPDRAKWIRTLFGELTRVLNHLMSVLSHA 200
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTP LWGFEEREKLM FYER SG+R+HAAY RPGGVHQDIP L++DI W F
Sbjct: 201 MDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPVGLLDDIYQWATQF 260
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L++ ++LT NRI+ QR +G V +A F+G M+RGSG WD+RKSQPY+ Y
Sbjct: 261 GDRLDETEEMLTDNRIWLQRLQGVGVVSAAEALNLSFTGPMLRGSGVPWDIRKSQPYDAY 320
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+++FD+P+G GDCYDRYLVRM E R+S++II QC+N++ GPV D K+ PP
Sbjct: 321 DQVEFDVPVGVRGDCYDRYLVRMEEFRQSLRIIHQCLNKMPA----GPVRVEDYKVSPPP 376
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
RA MK +ME+LIHHF LYT+GY VP GE Y+A+EAPKGE GV+++SDG +PYR IRAP
Sbjct: 377 RAAMKENMEALIHHFLLYTKGYAVPPGETYSAIEAPKGEMGVFVVSDGSERPYRVHIRAP 436
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHL + +CKGH LAD A++G++D+VFGEVDR
Sbjct: 437 GFAHLAGFDHVCKGHMLADAVAVIGTMDLVFGEVDR 472
>gi|112253844|ref|YP_717100.1| NADH dehydrogenase subunit 7 [Brassica napus]
gi|37591046|dbj|BAC98848.1| NADH dehydrogenase subunit 7 [Brassica napus]
Length = 394
Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats.
Identities = 255/394 (64%), Positives = 318/394 (80%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K++ ++FT+NFGPQHPAAHGVLRL+LE++GE+VER +PHIGLLHRGTEKLIE KT+LQA+
Sbjct: 5 KRQIKNFTLNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQAL 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M QEHAY+LAVEKLL E+P+R Q IRVL+ EI RIL+HLL +TT AMD
Sbjct: 65 PYFDRLDYVSMMAQEHAYSLAVEKLLNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTP LW FEEREKL+ FYER SG+RMHA++ RPGGV QD+P L DI + F S
Sbjct: 125 VGALTPFLWAFEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCRDIDSFTQQFAS 184
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++++ ++LTGNRI+KQR V+IGTV + A WGFSGVM+RGSG WDLR++ PY+ Y +
Sbjct: 185 RIDELEEMLTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGSGVCWDLRRAAPYDVYDQ 244
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LDFD+P+G GDCYDRY +R+ EMR+S++II QC+N++ G + A D K+ PP R
Sbjct: 245 LDFDVPVGTRGDCYDRYCIRIEEMRQSLRIIVQCLNQM----PSGMIKADDRKLCPPSRC 300
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
MK SMESLIHHF+LYTEG+ VP Y AVEAPKGEFGV+L+S+G N+PYRCKIRAPG+
Sbjct: 301 RMKLSMESLIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGF 360
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ ++F+ K H LADV I+G+ DIVFGEVDR
Sbjct: 361 AHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 394
>gi|221234966|ref|YP_002517402.1| NADH dehydrogenase subunit D [Caulobacter crescentus NA1000]
gi|220964138|gb|ACL95494.1| NADH-quinone oxidoreductase chain D [Caulobacter crescentus NA1000]
Length = 416
Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats.
Identities = 298/396 (75%), Positives = 343/396 (86%), Gaps = 2/396 (0%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + R F INFGPQHPAAHGVLRL+LELDGEIVERVDPHIGLLHRGTEKL+E +T+LQ
Sbjct: 23 IPETPVRKFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLMEARTYLQ 82
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PYFDRLDYVAPMNQEHA+ LA+EKLLG+E+PIRGQ+IRVLYSEIGRIL+HLLNVTTQA
Sbjct: 83 NIPYFDRLDYVAPMNQEHAFCLAIEKLLGVEVPIRGQIIRVLYSEIGRILNHLLNVTTQA 142
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLMVFYERA G+R+H+ YFRPGGVHQD+PPELVEDI W +F
Sbjct: 143 MDVGALTPPLWGFEEREKLMVFYERACGARLHSNYFRPGGVHQDLPPELVEDIDTWAKAF 202
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P +DI L+T NRIFKQRNV+IG V E+A WGFSGVM+RGSG AWDLR+SQPYE Y
Sbjct: 203 PKICDDIEGLITDNRIFKQRNVDIGVVSKEEAISWGFSGVMVRGSGIAWDLRRSQPYENY 262
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
++ +FDIP+GK+GDCYDRYL RM EMRES KIIRQ L + GPV + D K+ PP+
Sbjct: 263 NDFEFDIPLGKNGDCYDRYLCRMQEMRESTKIIRQACEML--RKTHGPVLSEDNKVAPPR 320
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
RA+MKRSME+LIHHFKLYTEG+ P GEVYA VEAPKGEFGV+++SDG NKPYRCKIRAP
Sbjct: 321 RAEMKRSMEALIHHFKLYTEGFKTPAGEVYACVEAPKGEFGVFVVSDGTNKPYRCKIRAP 380
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ HL AM+++ +GHQLADVSAILGSLDIVFGE+DR
Sbjct: 381 GFPHLAAMDWMNRGHQLADVSAILGSLDIVFGEIDR 416
>gi|302923307|ref|XP_003053647.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256734588|gb|EEU47934.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 468
Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats.
Identities = 241/396 (60%), Positives = 307/396 (77%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
++ +K R +T+NFGPQHPAAHGVLRLILEL+GE + R DPH+GLLHRGTEKLIE KT+LQ
Sbjct: 77 VEDRKVRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYLQ 136
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+ M E +ALAVEKLL IEIP R + IR L+ EI R+L+HL++V + A
Sbjct: 137 ALPYFDRLDYVSMMTNEQCFALAVEKLLNIEIPERAKFIRTLFGEITRVLNHLMSVLSHA 196
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTP LWGFEEREKLM FYER SG+R+HAAY RPGGVHQDIP L++DI W F
Sbjct: 197 MDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPVGLLDDIYQWATQF 256
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+++ ++LT NRI+ +R +G V +A F+GVM+RGSG WD+RKSQPY+ Y
Sbjct: 257 GDRIDETEEMLTDNRIWIERLRGVGVVPASEALNLSFTGVMLRGSGVPWDIRKSQPYDAY 316
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+++FD+P+G +GDCYDRYL RM E R+S++II QC+N++ GPV D K+ PP
Sbjct: 317 DQVEFDVPVGTNGDCYDRYLCRMEEFRQSLRIIHQCLNKMPA----GPVRVEDYKVSPPP 372
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R+ MK +ME+LIHHF LYT+GY VP GE Y+A+EAPKGE GVY++SDG +PYRC IRAP
Sbjct: 373 RSAMKENMEALIHHFLLYTKGYAVPPGETYSAIEAPKGEMGVYVVSDGSERPYRCHIRAP 432
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHL + + KGH LAD A++G++D+VFGEVDR
Sbjct: 433 GFAHLGGFDHVSKGHLLADAVAVIGTMDLVFGEVDR 468
>gi|310800370|gb|EFQ35263.1| NADH dehydrogenase [Glomerella graminicola M1.001]
Length = 473
Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats.
Identities = 243/396 (61%), Positives = 304/396 (76%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
++ +K R +T+NFGPQHPAAHGVLRLILEL+GE + R DPH+GLLHRGTEKL E KT+LQ
Sbjct: 82 VEDRKIRHYTVNFGPQHPAAHGVLRLILELNGEEIIRADPHVGLLHRGTEKLCEYKTYLQ 141
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+ M E +ALAVEKLL IEIP R + IR L+ EI RIL+HL++V + A
Sbjct: 142 ALPYFDRLDYVSMMTNEQCFALAVEKLLNIEIPDRAKWIRTLFGEITRILNHLMSVLSHA 201
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTP LWGFEEREKLM FYER SG+R+HAAY RPGGVHQDIP L++DI W F
Sbjct: 202 MDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPVGLLDDIYQWATQF 261
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+++ ++LT NRI+ QR IG V +A F+GVM+RGSG WD+RKSQPY+ Y
Sbjct: 262 GDRIDETEEMLTDNRIWIQRLQGIGVVSAAEALNLSFTGVMLRGSGVPWDIRKSQPYDAY 321
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+++FD+P+G GDCYDRYL RM E R+S++II QC+N++ GPV D KI PP
Sbjct: 322 DQVEFDVPVGVRGDCYDRYLCRMEEFRQSLRIIHQCLNKMPA----GPVRVEDYKISPPP 377
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
RA MK +ME+LIHHF LYT+GY VP GE Y+A+EAPKGE GV+++SDG +PYR IRAP
Sbjct: 378 RAAMKENMEALIHHFLLYTKGYAVPPGETYSAIEAPKGEMGVFVVSDGSERPYRVHIRAP 437
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHL + + KGH LAD A++G++D+VFGEVDR
Sbjct: 438 GFAHLGGFDHVSKGHMLADAVAVIGTMDLVFGEVDR 473
>gi|46105501|ref|XP_380552.1| NUCM_NEUCR NADH-ubiquinone oxidoreductase 49 kDa subunit,
mitochondrial precursor (Complex I-49KD) (CI-49KD)
[Gibberella zeae PH-1]
Length = 468
Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats.
Identities = 239/396 (60%), Positives = 306/396 (77%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ +K R +T+NFGPQHPAAHGVLRLILEL+GE + R DPH+GLLHRGTEKLIE KT+LQ
Sbjct: 77 VSDRKVRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYLQ 136
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+ M E ++LAVEKLL +EIP R + IR L+ EI RIL+HL++V + A
Sbjct: 137 ALPYFDRLDYVSMMTNEQCFSLAVEKLLNVEIPERAKWIRTLFGEITRILNHLMSVLSHA 196
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTP LWGFEEREKLM FYER SG+R+HAAY RPGGVHQDIP L++DI W F
Sbjct: 197 MDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPVGLLDDIYQWATQF 256
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+++ ++LT NRI+ +R +G V +A F+GVM+RGSG +D+RK+QPY+ Y
Sbjct: 257 GDRIDETEEMLTDNRIWIERLRGVGVVPAAEALNLSFTGVMLRGSGVPFDVRKNQPYDAY 316
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+++FD+P+G +GDCYDRYL RM E R+S++II QC+N++ GPV D K+ PP
Sbjct: 317 DQVEFDVPVGTNGDCYDRYLCRMEEFRQSLRIIHQCLNKMPA----GPVRVEDYKVSPPP 372
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
RA MK +ME+LIHHF LYT+GY VP GE Y+A+EAPKGE GVY++SDG +PYRC IRAP
Sbjct: 373 RAAMKENMEALIHHFLLYTKGYAVPPGETYSAIEAPKGEMGVYVVSDGSERPYRCHIRAP 432
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHL + + KGH LAD A++G++D+VFGEVDR
Sbjct: 433 GFAHLGGFDHVSKGHLLADAVAVIGTMDLVFGEVDR 468
>gi|307209286|gb|EFN86377.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial [Harpegnathos saltator]
Length = 469
Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats.
Identities = 247/394 (62%), Positives = 313/394 (79%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++ ++ INFGPQHPAAHGVLRLILELDGEIV DPHIGLLHRGTEKLIE KT++QA+
Sbjct: 80 EQTIQNIKINFGPQHPAAHGVLRLILELDGEIVLNADPHIGLLHRGTEKLIEYKTYMQAL 139
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E ++LA+EKLL I++P+RG+ IRVL++EI RIL+H++ + T A+D
Sbjct: 140 PYFDRLDYVSMMCNEQCFSLAIEKLLNIDVPLRGKYIRVLFAEITRILNHIMGIGTHALD 199
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA+TP W FEEREKLM FYER SG+RMHAAY RPGGV D+P L++DI W +
Sbjct: 200 IGAMTPFFWLFEEREKLMEFYERVSGARMHAAYVRPGGVSLDMPLGLMDDIYDWATKYTE 259
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+++ D+LT NRI+KQR NIG V EDA +GFSGVM+RGSG WDLRK+ PY+ Y
Sbjct: 260 RLDEVEDMLTENRIWKQRTTNIGVVSAEDALNFGFSGVMVRGSGIKWDLRKTAPYDAYDL 319
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+DFD+P+G +GDCYDRYL RM EMR+S++II QC+N++ G V D KIVPP+R
Sbjct: 320 VDFDVPVGINGDCYDRYLCRMEEMRQSLRIIHQCLNQMPA----GEVRCDDAKIVPPRRE 375
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SME+LIHHFKLY++G+ VP G Y A+EAPKGEFGVYL+SDG +KPYRCKI+APG+
Sbjct: 376 EMKTSMEALIHHFKLYSQGFQVPPGATYTAIEAPKGEFGVYLVSDGSSKPYRCKIKAPGF 435
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL A++++ H LADV AI+G+LDIVFGE+DR
Sbjct: 436 AHLAALQYMGTKHFLADVVAIIGTLDIVFGEIDR 469
>gi|316996031|dbj|BAD83554.2| NADH dehydrogenase subunit 7 [Nicotiana tabacum]
Length = 394
Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats.
Identities = 256/393 (65%), Positives = 318/393 (80%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
++ ++FT+NFGPQHPAAHGVLRL+LE++GE+VER +PHIGLLHRGTEKLIE KT+LQA+P
Sbjct: 6 RQIKNFTLNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQALP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M QEHAY+LAVE+LL E+P+R Q IRVL+ EI RIL+HLL +TT AMDV
Sbjct: 66 YFDRLDYVSMMAQEHAYSLAVERLLNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMDV 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP LW FEEREKL+ FYER SG+RMHA++ RPGGV QD+P L DI + F S
Sbjct: 126 GALTPFLWAFEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCIDIDSFTQQFASR 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
++++ ++LTGNRI+KQR V+IGTV + A WGFSGVM+RGSG WDLRK+ PY+ Y +L
Sbjct: 186 IDELEEMLTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGSGVCWDLRKAAPYDVYDQL 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DFDIP+G GDCYDRY +R+ EMR+SV+II QC+N++ G + A D K+ PP R+
Sbjct: 246 DFDIPVGTRGDCYDRYCIRIEEMRQSVRIIVQCLNQM----PSGMIKADDRKLCPPSRSR 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK SMESLIHHF+LYTEG+ VP Y AVEAPKGEFGV+L+S+G N+PYRCKIRAPG+A
Sbjct: 302 MKLSMESLIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFA 361
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ ++F+ K H LADV I+G+ DIVFGEVDR
Sbjct: 362 HLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 394
>gi|311253960|ref|XP_001927701.2| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial [Sus scrofa]
Length = 473
Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats.
Identities = 247/389 (63%), Positives = 311/389 (79%), Gaps = 4/389 (1%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
+ T+NFGPQHPAAHGVLRL++EL GE+V + DPHIGLLHRGTEKLIE KT+LQA+PYFDR
Sbjct: 89 NLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDR 148
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
LDYV+ M E AY+LAVEKLL I+ P R Q IRVL+ EI R+L+H++ VTT A+D+GA+T
Sbjct: 149 LDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRLLNHIMAVTTHALDIGAMT 208
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
P W FEEREK+ FYER SG+RMHAAY RPGGVHQD+P L++DI + +F ++++
Sbjct: 209 PFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLLDDIYEFSKNFSFRIDEL 268
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
++LT NRI++ R V+IG V EDA +GFSGVM+RGSG WDLRK+QPY+ Y +++FD+
Sbjct: 269 EEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDV 328
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
PIG GDCYDRYL R+ EMR+S++II QC+N++ G + D K+ PPKRA+MK S
Sbjct: 329 PIGSRGDCYDRYLCRVEEMRQSLRIISQCLNKM----PPGEIKVDDAKVSPPKRAEMKTS 384
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
MESLIHHFKLYTEGY VP G Y A+EAPKGEFGVYL+SDG ++PYRCKI+APG+AHL
Sbjct: 385 MESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAG 444
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 445 LDKMSKGHMLADVVAIIGTQDIVFGEVDR 473
>gi|1363358|pir||S57332 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 7 - wood
tobacco mitochondrion
Length = 394
Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats.
Identities = 254/393 (64%), Positives = 316/393 (80%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
++ ++FT+NFGPQHPAAHGVLRL+LE++GE+VER +PHIGLLHRGTEKLIE KT+LQA+P
Sbjct: 6 RQIKNFTLNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQALP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M QEHAY+LAVE+LL E+P+R Q IRVL+ EI RIL+HLL +TT AMDV
Sbjct: 66 YFDRLDYVSMMAQEHAYSLAVERLLNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMDV 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP LW FEEREKL+ FYER SG+RMHA++ RPGGV QD+P L DI + F S
Sbjct: 126 GALTPFLWAFEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCIDIDSFTQQFASR 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
++++ ++LTGNRI+KQR V+IGTV + A WGFSGVM+RGSG WDLRK+ PY+ Y +L
Sbjct: 186 IDELEEMLTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGSGVCWDLRKAAPYDVYDQL 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DFDIP+G GDCYDRY +R+ EMR+SV+II QC+N++ G + A D K+ PP R+
Sbjct: 246 DFDIPVGTRGDCYDRYCIRIEEMRQSVRIIVQCLNQM----PSGMIKADDRKLCPPSRSR 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK SMESLIHHF+LYTEG+ VP Y AVEAPKGEFGV+L+S+G N+PYRCKIRAP +A
Sbjct: 302 MKTSMESLIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPCFA 361
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ ++F+ K H LADV +G+ DIVFGEVDR
Sbjct: 362 HLQGLDFMSKHHMLADVVTTIGTQDIVFGEVDR 394
>gi|158286683|ref|XP_308864.3| AGAP006891-PA [Anopheles gambiae str. PEST]
gi|157020586|gb|EAA03959.4| AGAP006891-PA [Anopheles gambiae str. PEST]
Length = 471
Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats.
Identities = 253/394 (64%), Positives = 312/394 (79%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+K+ R+ INFGPQHPAAHGVLRL+LELDGE V R DPHIGLLHRGTEKLIE KT++QA+
Sbjct: 82 EKQVRNLKINFGPQHPAAHGVLRLVLELDGETVMRADPHIGLLHRGTEKLIEYKTYVQAL 141
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E Y+LAVEKLL IEIP R + IRVL++EI RIL+H++ + T A+D
Sbjct: 142 PYFDRLDYVSMMCNEQCYSLAVEKLLNIEIPPRAKYIRVLFAEITRILNHIMAIGTHALD 201
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTP W FEEREK+M FYER SG+RMHAAY RPGGV QDIP L++DI + F
Sbjct: 202 VGALTPFFWLFEEREKMMEFYERVSGARMHAAYVRPGGVAQDIPLGLLDDIYDFAVRFGE 261
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+++ D+LT NRI+ QR VNIG V EDA +GFSGVM+RGSG WDLRK QPY+ Y +
Sbjct: 262 RLDEVEDVLTSNRIWVQRTVNIGVVTAEDALNYGFSGVMLRGSGIKWDLRKVQPYDAYDQ 321
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++FD+PIG GDCYDRYL R+ EMR+S++II QC+NR+ G + D KI PP R
Sbjct: 322 MEFDVPIGTKGDCYDRYLCRIEEMRQSLRIIDQCLNRMPA----GEIKTDDGKISPPSRT 377
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK+SME+LIHHFKL+T+GY VP G Y AVEAPKGEFGVYL+SDG ++PYRCKI+APG+
Sbjct: 378 EMKQSMEALIHHFKLFTQGYQVPPGSTYTAVEAPKGEFGVYLVSDGSSQPYRCKIKAPGF 437
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL A++ + + H LADV AI+G+LD+VFGE+DR
Sbjct: 438 AHLAALDKIGRHHMLADVVAIIGTLDVVFGEIDR 471
>gi|148225797|ref|NP_001089829.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [Xenopus laevis]
gi|80479245|gb|AAI08511.1| MGC130896 protein [Xenopus laevis]
Length = 459
Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats.
Identities = 248/389 (63%), Positives = 309/389 (79%), Gaps = 4/389 (1%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
+ TINFGPQHPAAHGVLRL++EL GE V+R DPHIGLLHRGTEKLIE KT+LQA+PYF+R
Sbjct: 75 NLTINFGPQHPAAHGVLRLVMELSGESVKRCDPHIGLLHRGTEKLIEYKTYLQALPYFNR 134
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
LDYV+ M E AY+LAVEKLL I+ P R Q IRVL+ EI RIL+H++ VT A+D+GA+T
Sbjct: 135 LDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRILNHIMAVTCHALDIGAMT 194
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
P W FEEREK+ FYER SG+RMHAAY RPGGVHQD+P L++DI + +F ++++
Sbjct: 195 PFFWMFEEREKMFEFYERVSGARMHAAYVRPGGVHQDMPLGLMDDIYEFIKNFSIRVDEV 254
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
++LT NRI+K R V+IG V EDA +GFSGVM+RGSG WDLRKSQPY+ Y +++FD+
Sbjct: 255 EEMLTNNRIWKNRTVDIGVVSAEDALNYGFSGVMLRGSGIQWDLRKSQPYDVYDQVEFDV 314
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
PIG GDCYDRYL R+ EMR+S++II QC+N++ G + D K+ PPKR++MK S
Sbjct: 315 PIGSRGDCYDRYLCRVEEMRQSLRIILQCLNKM----PEGEIKVDDAKVSPPKRSEMKHS 370
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
MESLIHHFKLYTEGY VP G Y A+EAPKGEFGVYL+SDG +PYRCKI+APG+AHL
Sbjct: 371 MESLIHHFKLYTEGYQVPPGTTYTAIEAPKGEFGVYLVSDGSTRPYRCKIKAPGFAHLAG 430
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ + +GH LADV AI+G+ DIVFGEVDR
Sbjct: 431 LDMMSQGHMLADVVAIIGTQDIVFGEVDR 459
>gi|91205209|ref|YP_537564.1| NADH dehydrogenase subunit D [Rickettsia bellii RML369-C]
gi|91068753|gb|ABE04475.1| NADH dehydrogenase I chain D [Rickettsia bellii RML369-C]
Length = 395
Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats.
Identities = 263/394 (66%), Positives = 317/394 (80%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++S T+N GPQHPA HGVLRLILE+DGE+V DPHIGLLHRGTEKLIE KT+LQA+
Sbjct: 6 TNNTKSITLNLGPQHPATHGVLRLILEMDGEVVNNADPHIGLLHRGTEKLIEHKTYLQAI 65
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+PM QEHA+ALA E LL EIP R Q IRVL+SE+ RIL+H LN+ +QA+D
Sbjct: 66 PYFDRLDYVSPMCQEHAFALAAESLLECEIPRRAQFIRVLFSELTRILNHTLNIGSQALD 125
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA TP LW FEEREK+M FYER SGSRMH+ YFRPGGV +D+P L+EDI + FP
Sbjct: 126 VGATTPLLWLFEEREKIMEFYERVSGSRMHSNYFRPGGVAEDLPDGLLEDIDKFIQQFPP 185
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L DI +LL NR++KQR V+IG V ++A WGFSG M+RGSG AWDLRKS PY+ Y+E
Sbjct: 186 KLQDIENLLNENRLWKQRLVDIGVVSQKEAMDWGFSGPMLRGSGIAWDLRKSNPYDVYAE 245
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+DF++PIGK+GDCYDRYLVRM+EM ESVKII+QC+ ++ GPV DPK+ PP RA
Sbjct: 246 MDFEVPIGKNGDCYDRYLVRMLEMYESVKIIKQCIEKM----PQGPVKTDDPKLTPPTRA 301
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
MK SME++IHHFKLYTEGY VP GE+Y AVEAPKGEFGVYL S GGN+PYRC+I+APG+
Sbjct: 302 KMKESMEAMIHHFKLYTEGYDVPAGEIYKAVEAPKGEFGVYLYSTGGNRPYRCRIKAPGF 361
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ ++F+ KGH +ADV I+ +LDIVFGE+DR
Sbjct: 362 AHLQGLDFMSKGHLMADVITIIATLDIVFGEIDR 395
>gi|11467085|ref|NP_042561.1| NADH dehydrogenase, subunit 7 [Acanthamoeba castellanii]
gi|3914189|sp|Q37384|NDUS2_ACACA RecName: Full=NADH-ubiquinone oxidoreductase 49 kDa subunit;
AltName: Full=NADH dehydrogenase subunit 7
gi|562066|gb|AAD11854.1| NADH dehydrogenase, subunit 7 [Acanthamoeba castellanii]
Length = 401
Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats.
Identities = 260/396 (65%), Positives = 318/396 (80%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ K ++FT+NFGPQHPAAHGVLRLILELDGE+V + DPHIGLLHRGTEKLIE KT++Q
Sbjct: 10 IKTSKIKNFTMNFGPQHPAAHGVLRLILELDGELVRKADPHIGLLHRGTEKLIEYKTYIQ 69
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+ M+QEHAY+LA+EKLL +PIR Q IRV+YSE+ RIL+H+L VTT A
Sbjct: 70 ALPYFDRLDYVSMMSQEHAYSLAIEKLLNCNVPIRAQYIRVIYSELTRILNHILAVTTHA 129
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTP LW FEEREKLM FYER SG+RMHAAY RPGGV QD P L DI + + F
Sbjct: 130 MDVGALTPFLWLFEEREKLMEFYERVSGARMHAAYIRPGGVAQDFPLGLWNDIMQFVEQF 189
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L ++ +LL GNRI+KQR V++G V E+A GFSGVM+RGSG AWDLRK+ PYE Y
Sbjct: 190 FWRLVEVEELLNGNRIWKQRLVDVGIVTAEEALSHGFSGVMLRGSGIAWDLRKNNPYEVY 249
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
++L+F+IPIGK+GDCYDRYL+R+ EM ES+ II+QC+ + G + +D KI PP+
Sbjct: 250 NKLNFNIPIGKNGDCYDRYLIRVYEMYESLNIIKQCLTAMPA----GLIKVNDKKITPPE 305
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R DMK SMESLIHHFKLY+EG++VP E YA VEAPKGEFGVY++SDG NKPYRCKI+AP
Sbjct: 306 RTDMKYSMESLIHHFKLYSEGFNVPENETYACVEAPKGEFGVYVVSDGSNKPYRCKIKAP 365
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ HLQ++ + KGH +ADV I+G+ DIVFGE+DR
Sbjct: 366 GFLHLQSLNSMSKGHMIADVVTIIGTQDIVFGEIDR 401
>gi|320107662|ref|YP_004183252.1| NADH dehydrogenase I subunit D [Terriglobus saanensis SP1PR4]
gi|319926183|gb|ADV83258.1| NADH dehydrogenase I, D subunit [Terriglobus saanensis SP1PR4]
Length = 426
Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats.
Identities = 195/395 (49%), Positives = 252/395 (63%), Gaps = 4/395 (1%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
D ++ +N GPQHP+ HGVLRL+LE+DGE V P IG LH G EK E K + Q
Sbjct: 36 DPAGDQTMVLNMGPQHPSTHGVLRLLLEIDGEAVISCSPDIGYLHTGIEKTCEAKFYQQV 95
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
VP DR+DY+ PM AY LAVEKLL +EIP R Q +RVL +E+ RI SHL+ + T AM
Sbjct: 96 VPLTDRIDYLCPMTNNLAYCLAVEKLLDLEIPERAQTLRVLMNELTRIQSHLVWLGTHAM 155
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D+GALT L+ F ERE+++ +E SG RM +YFR GG+ + P + E + P
Sbjct: 156 DIGALTVFLYCFREREEILRIFEAISGQRMMTSYFRIGGLSMEPPIDFWERTRKFLKRMP 215
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+ DLLTGN I+ R +G + EDA G +G +R SG WDLR+ PY Y
Sbjct: 216 EKIKQYEDLLTGNPIWFGRLKGVGYLSPEDAIALGVTGPPLRASGVDWDLRRDMPYSGYE 275
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ F +P+ GD + RY+VRM EM ESVKI Q ++R+ G + A PKI+ P R
Sbjct: 276 KYQFKVPVSTAGDVWARYVVRMEEMYESVKICVQAMDRM----PEGRIVADAPKIILPDR 331
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
MK MESLIHHFK+ TEG+ VP G+VY AVE+P+GE G Y++SDG KPYR +R P
Sbjct: 332 EQMKTQMESLIHHFKIVTEGFAVPAGQVYQAVESPRGEMGYYVVSDGTAKPYRVHMRNPS 391
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YA LQA+E +CKG LADV A++GS+DIV GE+DR
Sbjct: 392 YATLQALETMCKGKLLADVVAVIGSIDIVLGEIDR 426
>gi|157964434|ref|YP_001499258.1| NADH dehydrogenase subunit D [Rickettsia massiliae MTU5]
gi|157844210|gb|ABV84711.1| NADH dehydrogenase I chain D [Rickettsia massiliae MTU5]
Length = 422
Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats.
Identities = 255/394 (64%), Positives = 310/394 (78%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ T+N GPQHPA HGVLRLILE+DGE+V PHIGLLHRGTEKLIE KT+LQA+
Sbjct: 33 TNNTKTITLNLGPQHPATHGVLRLILEMDGEVVNNAVPHIGLLHRGTEKLIEHKTYLQAI 92
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+PM QEHA+ALAVE LL E+P R Q IRVL+SE+ RIL+H LN+ +QA+D
Sbjct: 93 PYFDRLDYVSPMCQEHAFALAVESLLECEVPRRAQFIRVLFSELTRILNHTLNIGSQALD 152
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA TP LW FEEREK+M FYE SGSRMH+ YFRPGGV D+P L+EDI + + FP
Sbjct: 153 IGATTPLLWLFEEREKIMEFYEHVSGSRMHSNYFRPGGVAADLPEGLLEDIDKFIEQFPP 212
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+DI LL NR++KQR V+IG ++A WGFSG M+RGSG AWDLRKS PY+ Y E
Sbjct: 213 KLHDIESLLNENRLWKQRLVDIGVASQKEAMDWGFSGPMLRGSGIAWDLRKSNPYDVYDE 272
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+DF +PIGK+GDCYDRY VRM+EM ES+KII+QC+ ++ G V DPK+ PP RA
Sbjct: 273 MDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQCIEKM----PKGAVKTDDPKLTPPTRA 328
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
MK SME++IHHFKLYTEGY VP GE Y AVEAPKGEFGVYL S GGN+PYRC+I+APG+
Sbjct: 329 KMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGEFGVYLYSQGGNRPYRCRIKAPGF 388
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ ++F+ KGH +ADV I+ +LDIVFGE+DR
Sbjct: 389 AHLQGLDFMSKGHLMADVITIIATLDIVFGEIDR 422
>gi|11466595|ref|NP_066485.1| NADH dehydrogenase subunit 7 [Rhodomonas salina]
gi|10444182|gb|AAG17756.1|AF288090_32 NADH dehydrogenase subunit 7 [Rhodomonas salina]
Length = 399
Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats.
Identities = 248/393 (63%), Positives = 312/393 (79%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K ++FT+NFGPQHPAAHGVLRLILEL+GE + + DPHIGLLHRGTEKLIE KT++Q +P
Sbjct: 11 KNIKNFTVNFGPQHPAAHGVLRLILELNGETIIKADPHIGLLHRGTEKLIENKTYIQGLP 70
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M EHA+ LA+E+LL IE+P+R Q IRV++SEI RIL+HLL + AMDV
Sbjct: 71 YFDRLDYVSMMINEHAFCLAIERLLNIEVPLRAQFIRVIFSEITRILNHLLAICCHAMDV 130
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP LWGFEEREKLM FYER SG+RMHAAYFRPGGV QD+P L DI +C+ F S
Sbjct: 131 GALTPILWGFEEREKLMEFYERVSGARMHAAYFRPGGVSQDLPLGLCADIFKFCEQFSSR 190
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
++++ +LLT NRI+KQR V++G + E A G +G ++R +G +WDLR++ PYE Y +L
Sbjct: 191 IDELEELLTENRIWKQRLVDVGVITFEQALNLGLTGPLLRSTGFSWDLRRTHPYEIYDKL 250
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DFDIPIGK+GD YDRY +R+ EMR+S+ II QC+N + G ++ KI PP R D
Sbjct: 251 DFDIPIGKNGDSYDRYCIRIEEMRQSLSIIVQCLNNM----PQGSFKVNNMKISPPSRVD 306
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MKRSMESLIHHFK ++EG+ +P G VYAAVE PKGEFGV L++DG NKPYRCKI+APG+
Sbjct: 307 MKRSMESLIHHFKYFSEGFTIPKGIVYAAVEHPKGEFGVSLVTDGTNKPYRCKIKAPGFI 366
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQA++FL +GH LAD+ I+G+LDIVFGE+DR
Sbjct: 367 HLQALDFLSRGHLLADLVTIIGTLDIVFGEIDR 399
>gi|51473548|ref|YP_067305.1| NADH dehydrogenase subunit D [Rickettsia typhi str. Wilmington]
gi|51459860|gb|AAU03823.1| NADH dehydrogenase (ubiquinone) subunit D [Rickettsia typhi str.
Wilmington]
Length = 404
Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats.
Identities = 258/395 (65%), Positives = 318/395 (80%), Gaps = 4/395 (1%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ +++ T+N GPQHPA HGVLRLILE+DGE+V DPHIGLLHRGTEKLIE KT+LQA
Sbjct: 14 NTMTNKTITLNLGPQHPATHGVLRLILEMDGEVVNNADPHIGLLHRGTEKLIEHKTYLQA 73
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+PYFDRLDYV+PM QEHA+ALAVE LL +P R Q IRVL+SE+ RIL+H LN+ +QA+
Sbjct: 74 IPYFDRLDYVSPMCQEHAFALAVESLLECSVPRRAQFIRVLFSELTRILNHTLNIGSQAL 133
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D+GA TP LW FEEREK+M FYER SGSRMHA YFRPGGV +D+P +L+EDI + + FP
Sbjct: 134 DIGATTPLLWLFEEREKIMEFYERVSGSRMHANYFRPGGVAEDLPEKLLEDINKFIEQFP 193
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
S LNDI +LL NR++KQR V+IG V +DA WGFSG M+RGSG AWDLRKS PY+ Y
Sbjct: 194 SKLNDIENLLNENRLWKQRLVDIGVVSQKDAMDWGFSGPMLRGSGIAWDLRKSNPYDVYD 253
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
E+DF++P+GK+GDCYDRYLVR++EM ES+KII+QC+ ++ G V +PK+ PP R
Sbjct: 254 EMDFEVPVGKNGDCYDRYLVRILEMYESIKIIKQCIAKM----PKGQVKTDNPKLTPPTR 309
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
MK SME++IHHFKLYTEGY VP+GE Y AVEAPKGEFGVYL S GGNKPYRC+I+APG
Sbjct: 310 EKMKESMEAMIHHFKLYTEGYDVPIGETYKAVEAPKGEFGVYLYSQGGNKPYRCRIKAPG 369
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AHLQ + F+ KGH ++DV I+ +LDIVFGE+DR
Sbjct: 370 FAHLQGLNFMSKGHLISDVITIIATLDIVFGEIDR 404
>gi|165933064|ref|YP_001649853.1| NADH dehydrogenase subunit D [Rickettsia rickettsii str. Iowa]
gi|165908151|gb|ABY72447.1| NADH-quinone oxidoreductase chain D [Rickettsia rickettsii str.
Iowa]
Length = 417
Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats.
Identities = 255/394 (64%), Positives = 312/394 (79%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ T+N GPQHPA HGVLRLILE+DGE+V DPHIGLLHRGTEKLIE KT+LQA+
Sbjct: 28 TNNTKTITLNLGPQHPATHGVLRLILEMDGEVVNNADPHIGLLHRGTEKLIEHKTYLQAI 87
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+PM QEHA+ALAVE LL E+P R Q IRVL+SE+ RIL+H LN+ +QA+D
Sbjct: 88 PYFDRLDYVSPMCQEHAFALAVESLLECEVPRRAQFIRVLFSELTRILNHTLNIGSQALD 147
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA TP LW FEEREK+M FYE SGSRMH+ YFRPGGV D+P L+EDI + + FP
Sbjct: 148 IGATTPLLWLFEEREKIMEFYEHVSGSRMHSNYFRPGGVVADLPEGLLEDIDKFIEQFPP 207
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+DI LL NR++KQR V+IG V ++A WGFSG M+RGSG AWDLRKS PY+ Y E
Sbjct: 208 KLHDIESLLNENRLWKQRLVDIGVVSQKEAMDWGFSGPMLRGSGIAWDLRKSNPYDVYDE 267
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+DF +PIGK+GDCYDRY VRM+EM ES+KII+QC+ ++ G + DPK+ PP RA
Sbjct: 268 MDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQCIEKM----PKGAIKTDDPKLTPPTRA 323
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
MK SME++IHHFKLYTEGY VP GE Y AVEAPKGEFGVYL S GGN+PYRC+I+APG+
Sbjct: 324 KMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGEFGVYLYSRGGNRPYRCRIKAPGF 383
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ ++F+ +GH +ADV I+ +LDIVFGE+DR
Sbjct: 384 AHLQGLDFMSQGHLMADVITIIATLDIVFGEIDR 417
>gi|323398679|ref|YP_004222754.1| NADH dehydrogenase subunit 7 [Glaucocystis nostochinearum]
gi|321401372|gb|ADW83126.1| NADH dehydrogenase subunit 7 [Glaucocystis nostochinearum]
Length = 399
Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats.
Identities = 263/396 (66%), Positives = 320/396 (80%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
++KK+ ++FT+NFGPQHPAAHGVLRL+LEL+GE+VER DPHIGLLHRGTEKLIE K++LQ
Sbjct: 8 IEKKEFKNFTMNFGPQHPAAHGVLRLVLELNGEVVERADPHIGLLHRGTEKLIEHKSYLQ 67
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+ M QEHAY+LAVEKLLG ++P+R Q IRV++ EI RIL+HLL VT A
Sbjct: 68 ALPYFDRLDYVSMMAQEHAYSLAVEKLLGCKVPLRAQWIRVIFLEITRILNHLLAVTCHA 127
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+DVGALTP L GFEEREKLM FYER SG+RMHAAY RPGGV D+P L++DI + D F
Sbjct: 128 LDVGALTPLLLGFEEREKLMEFYERVSGARMHAAYIRPGGVSLDVPIGLLDDIYLFIDQF 187
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+++I +LLT NRI+KQR V++G V ++A WGFSGVM+RGSG WDLRKSQPYE Y
Sbjct: 188 TKKIDEIEELLTNNRIWKQRLVDVGIVTADEAQAWGFSGVMLRGSGVVWDLRKSQPYETY 247
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+ DF+IPIG GDCYDRYL+RM EMR+S II Q +N + +G + D KI PP
Sbjct: 248 NLTDFNIPIGTKGDCYDRYLIRMEEMRQSTSIINQAINLI----PIGNIKVDDRKITPPS 303
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R ++K+SMESLIHHFKLY+EGY VP GE Y AVEAPKGEFG+YLI+DG N+PYRCKI+AP
Sbjct: 304 RTELKQSMESLIHHFKLYSEGYSVPFGETYTAVEAPKGEFGIYLIADGTNRPYRCKIKAP 363
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHLQ + + KGH LADV I+G+ DIVFGEVDR
Sbjct: 364 GFAHLQGLNMMSKGHMLADVVTIIGTQDIVFGEVDR 399
>gi|50261301|ref|YP_052909.1| NADH dehydrogenase subunit 7 [Saprolegnia ferax]
gi|48237614|gb|AAT40663.1| NADH dehydrogenase subunit 7 [Saprolegnia ferax]
Length = 392
Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats.
Identities = 261/396 (65%), Positives = 321/396 (81%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M KK ++F+INFGPQHPAAHGVLRLILEL+GEIV++ DPHIGLLHRGTEKLIE K +LQ
Sbjct: 1 MSLKKIKNFSINFGPQHPAAHGVLRLILELNGEIVQKADPHIGLLHRGTEKLIEYKNYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+ M+QEHAY LAVEKLL IP+R + IRVL+SEI RIL+HLL +T A
Sbjct: 61 ALPYFDRLDYVSMMSQEHAYVLAVEKLLNCNIPLRAKYIRVLFSEITRILNHLLAITCHA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+DVGA+TP WGFEEREKLM FYER SG+RMH++YFRPGGVHQD+P L+ DI +C+ F
Sbjct: 121 LDVGAMTPFFWGFEEREKLMEFYERVSGARMHSSYFRPGGVHQDLPLGLLNDIFIFCNQF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P+ L++ ++LTGNRI+KQR V+IG VK +DA GFSGVM+RGSG +WDLRK+QPYE Y
Sbjct: 181 PTRLDEFEEMLTGNRIWKQRLVDIGIVKAKDALDLGFSGVMLRGSGISWDLRKTQPYEIY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+LDF IPIG +GDCYDRYL+R+ EMR+S+ II Q +N++ GP+ D KI P
Sbjct: 241 DKLDFSIPIGTNGDCYDRYLIRIEEMRQSINIILQTLNQM----PEGPIKIDDKKISSPN 296
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +K+SMESLIHHFK Y+E V GE + +EAPKGEFGV+L+SDG NKPYRCKI+AP
Sbjct: 297 RVQIKQSMESLIHHFKYYSENITVNSGETFTVIEAPKGEFGVFLVSDGTNKPYRCKIKAP 356
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHLQA++F+CK H +ADV I+G+ DIVFGEVDR
Sbjct: 357 GFAHLQALDFMCKDHMIADVVTIIGTQDIVFGEVDR 392
>gi|197105265|ref|YP_002130642.1| NADH dehydrogenase I, D subunit [Phenylobacterium zucineum HLK1]
gi|218534443|sp|B4RCM6|NUOD_PHEZH RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|196478685|gb|ACG78213.1| NADH dehydrogenase I, D subunit [Phenylobacterium zucineum HLK1]
Length = 411
Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats.
Identities = 295/396 (74%), Positives = 339/396 (85%), Gaps = 2/396 (0%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + K R F INFGPQHPAAHGVLRL+LELDGE+VERVDPHIGLLHRGTEKL+E + + Q
Sbjct: 18 LPETKVRKFNINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLMEARPYAQ 77
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PYFDRLDYVAPMNQEHAY LA+EKLLG+E+P+RG LIR LY EIGRIL+HLLNVTTQA
Sbjct: 78 TIPYFDRLDYVAPMNQEHAYCLAIEKLLGVEVPVRGLLIRTLYDEIGRILNHLLNVTTQA 137
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLM+FYERASG+R+HA Y+R GGV QD+PPELV+DI WCD+F
Sbjct: 138 MDVGALTPPLWGFEEREKLMIFYERASGARLHANYYRVGGVRQDLPPELVQDISDWCDAF 197
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P L+DI L+T NRIFKQRNV+IG V E+A WGFSGVM+RGSG WDLR+SQPY Y
Sbjct: 198 PKILDDIEGLITDNRIFKQRNVDIGVVTKEEAIAWGFSGVMVRGSGIPWDLRRSQPYALY 257
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
SE++FDIP+G +GDCYDRYL RM EMRES KI++QC RLL GPV D K+ PP+
Sbjct: 258 SEMEFDIPLGVNGDCYDRYLCRMQEMRESTKIMKQCCERLLKT--SGPVLVDDHKVSPPR 315
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MKRSME+LIHHFKLYTEGY P G+VYA VEAPKGEFGVYL+S+G NKPYRCKIRAP
Sbjct: 316 RGEMKRSMEALIHHFKLYTEGYRTPPGDVYACVEAPKGEFGVYLVSNGTNKPYRCKIRAP 375
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GY HLQAM+++ +GH LADVSAILGSLDIVFGE+DR
Sbjct: 376 GYPHLQAMDWMNRGHMLADVSAILGSLDIVFGEIDR 411
>gi|109017802|ref|XP_001117968.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial isoform 5 [Macaca mulatta]
Length = 463
Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats.
Identities = 249/399 (62%), Positives = 314/399 (78%), Gaps = 7/399 (1%)
Query: 1 MDKKKS---RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT 57
MD K ++ T+NFGPQHPAAHGVLRL++EL GE+V + DPHIGLLHRGTEKLIE KT
Sbjct: 69 MDPPKDTMVKNMTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKT 128
Query: 58 FLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVT 117
+LQA+PYFDRLDYV+ M E AY+LAVEKLL I P R Q IRVL+ EI R+L+H++ VT
Sbjct: 129 YLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVT 188
Query: 118 TQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWC 177
T A+D+GA+TP W FEEREK+ FYER SG+RMHAAY RPGGVHQD+P L++DI +
Sbjct: 189 THALDLGAMTPLFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYEFS 248
Query: 178 DSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPY 237
+F L+++ ++LT NRI++ R ++IG V E+A +GFSGVM+RGSG WDLRK+QPY
Sbjct: 249 KNFSLRLDELEEMLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPY 308
Query: 238 ECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIV 297
+ Y ++DFD+P+G GDCYDRYL R+ EMR+S++II QC+N++ G + D K+
Sbjct: 309 DVYDQVDFDVPVGSRGDCYDRYLCRVEEMRQSLRIIVQCLNKM----PPGEIKVDDAKVS 364
Query: 298 PPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKI 357
PPKRA+MK SMESLIHHFKLYTEGY VP G Y A+EAPKGEFGVYL+SDG ++PYRCKI
Sbjct: 365 PPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKI 424
Query: 358 RAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+APG+AHL ++ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 425 KAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
>gi|304322204|ref|YP_003855847.1| NADH dehydrogenase subunit delta [Parvularcula bermudensis
HTCC2503]
gi|303301106|gb|ADM10705.1| NADH dehydrogenase delta subunit [Parvularcula bermudensis
HTCC2503]
Length = 406
Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats.
Identities = 294/395 (74%), Positives = 341/395 (86%), Gaps = 4/395 (1%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
D R FTINFGPQHPAAHGVLRL+LELDGEIVERVDPHIGLLHRGTEKLIE KT+LQA
Sbjct: 16 DASSDRPFTINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIEYKTYLQA 75
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+PYFDRLDYVAPMNQEHA+ LA EKLL +++P R ++IR LY EIGR LSHLLN+TTQAM
Sbjct: 76 IPYFDRLDYVAPMNQEHAFVLAAEKLLELDVPRRAKIIRTLYCEIGRQLSHLLNITTQAM 135
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
DVGALTPPLWGFEEREKLMVFYERA G+R+HAAYFR GGVHQD+P +L++DIG WC++FP
Sbjct: 136 DVGALTPPLWGFEEREKLMVFYERACGARLHAAYFRVGGVHQDLPQDLLDDIGEWCETFP 195
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
L+DI L+T NRIFKQRNV+IG V E+A+ WGFSGVM+RGSG WDLRKSQPYE Y
Sbjct: 196 QVLDDIEGLITDNRIFKQRNVDIGVVSREEAFAWGFSGVMLRGSGVPWDLRKSQPYEIYD 255
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
ELDFDI IGK+GDCYDRYLVR+ EM++S+KI++QC+ + + GP+ DP+I PP+R
Sbjct: 256 ELDFDIAIGKNGDCYDRYLVRIEEMKQSLKIMKQCLALI----EPGPIMTEDPRIGPPRR 311
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+MK SME+LI+HFKLYTEG VP GE YAAVEAPKGEFGVYL+S G NKPYRCKIRAPG
Sbjct: 312 GEMKTSMEALINHFKLYTEGPKVPAGEAYAAVEAPKGEFGVYLVSQGTNKPYRCKIRAPG 371
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YAHLQAM+++ +GH LADVSAI+G+LDIVFGEVDR
Sbjct: 372 YAHLQAMDWMNRGHMLADVSAIIGTLDIVFGEVDR 406
>gi|115770265|ref|XP_786922.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
Length = 771
Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats.
Identities = 227/385 (58%), Positives = 290/385 (75%), Gaps = 4/385 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ +K + INFGPQHPAAHGVLRL+LEL GE + R DPHIGLLHRGTEKLIE KT++Q
Sbjct: 74 IAEKDVANLVINFGPQHPAAHGVLRLVLELSGESIVRCDPHIGLLHRGTEKLIEYKTYMQ 133
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+ M E AY+LAVEK+L I +P R + IRV+ E+ RI +H++ V T A
Sbjct: 134 ALPYFDRLDYVSMMCNEQAYSLAVEKMLNITVPERAKYIRVMMGELTRIANHIMAVGTHA 193
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+D+GA+TP W FEEREK YER G+RMHAAY RPGGV QD+P ++D+ + +F
Sbjct: 194 LDIGAMTPFFWLFEEREKTFELYERVCGARMHAAYVRPGGVSQDLPLGFLDDMYDFIKNF 253
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
++++ ++LT NRI+K R V+IG V EDA +GFSGVM+RGSG WDLRK QPY+ Y
Sbjct: 254 SIRIDELEEMLTNNRIWKDRTVDIGVVTAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGY 313
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+++FDIPIG GDCYDRYL R+ EMR+S++I+ QC+N + G + D KI PP
Sbjct: 314 EKMNFDIPIGSKGDCYDRYLCRVEEMRQSLRIVHQCLNEM----PEGEIKVDDHKISPPG 369
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
RA+MK SMESLIHHFK +T+G+ VP G Y A+EAPKGEFGVY++SDG +KPYRCKIRAP
Sbjct: 370 RAEMKDSMESLIHHFKHFTQGFQVPPGATYTAIEAPKGEFGVYMVSDGSSKPYRCKIRAP 429
Query: 361 GYAHLQAMEFLCKGHQLADVSAILG 385
G+ HL ++ +CKGH LADV AI+G
Sbjct: 430 GFLHLAGLDKVCKGHMLADVVAIIG 454
>gi|225709630|gb|ACO10661.1| NADH dehydrogenase iron-sulfur protein 2, mitochondrial precursor
[Caligus rogercresseyi]
Length = 475
Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats.
Identities = 247/394 (62%), Positives = 312/394 (79%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+K R+ +NFGPQHPAAHGVLRL+L+LDGE+V DPHIGLLHRGTEKLIE KT++QA+
Sbjct: 86 EKTVRNIQVNFGPQHPAAHGVLRLVLQLDGELVREADPHIGLLHRGTEKLIEYKTYMQAL 145
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ + E AY+LAVEKLL I++P+R + IRVL+ E+ RIL+HL+ + T +D
Sbjct: 146 PYFDRLDYVSMVCNEQAYSLAVEKLLNIDVPLRAKYIRVLFGELTRILNHLMGIGTHILD 205
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+G +TP W FEEREK+M FYERASG+RMHAAY RPGGVH+DIP L++DI + FP
Sbjct: 206 LGGITPFFWMFEEREKMMEFYERASGARMHAAYVRPGGVHRDIPIGLLDDIYEFISKFPQ 265
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+++ DL+T NRIF R +IG V EDA +GFSGVM+RGSG WDLRKSQPY+ Y
Sbjct: 266 RLDEVEDLVTNNRIFVSRTTDIGVVSSEDALNYGFSGVMLRGSGIKWDLRKSQPYDAYDL 325
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+DFD+PIG+ GDCYDRY++RM EMR+SV+II+QC+N + G V D K +PP RA
Sbjct: 326 VDFDVPIGRKGDCYDRYMIRMEEMRQSVRIIQQCLNDM----PEGEVRTDDAKCIPPTRA 381
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SME+LIHHFKL+T+GY VP G Y A+EAPKGEFGVYL+SDG ++PYRCKI+APG+
Sbjct: 382 EMKSSMEALIHHFKLFTQGYTVPAGSTYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGF 441
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL AM+ + K LADV AI+G++D+VFGEVDR
Sbjct: 442 AHLAAMDHMSKNGFLADVVAIIGTIDVVFGEVDR 475
>gi|157827453|ref|YP_001496517.1| NADH dehydrogenase subunit D [Rickettsia bellii OSU 85-389]
gi|147705275|sp|Q1RJI9|NUOD_RICBR RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|218534456|sp|A8GX80|NUOD_RICB8 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|157802757|gb|ABV79480.1| NADH dehydrogenase subunit D [Rickettsia bellii OSU 85-389]
Length = 391
Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats.
Identities = 263/394 (66%), Positives = 317/394 (80%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++S T+N GPQHPA HGVLRLILE+DGE+V DPHIGLLHRGTEKLIE KT+LQA+
Sbjct: 2 TNNTKSITLNLGPQHPATHGVLRLILEMDGEVVNNADPHIGLLHRGTEKLIEHKTYLQAI 61
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+PM QEHA+ALA E LL EIP R Q IRVL+SE+ RIL+H LN+ +QA+D
Sbjct: 62 PYFDRLDYVSPMCQEHAFALAAESLLECEIPRRAQFIRVLFSELTRILNHTLNIGSQALD 121
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA TP LW FEEREK+M FYER SGSRMH+ YFRPGGV +D+P L+EDI + FP
Sbjct: 122 VGATTPLLWLFEEREKIMEFYERVSGSRMHSNYFRPGGVAEDLPDGLLEDIDKFIQQFPP 181
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L DI +LL NR++KQR V+IG V ++A WGFSG M+RGSG AWDLRKS PY+ Y+E
Sbjct: 182 KLQDIENLLNENRLWKQRLVDIGVVSQKEAMDWGFSGPMLRGSGIAWDLRKSNPYDVYAE 241
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+DF++PIGK+GDCYDRYLVRM+EM ESVKII+QC+ ++ GPV DPK+ PP RA
Sbjct: 242 MDFEVPIGKNGDCYDRYLVRMLEMYESVKIIKQCIEKM----PQGPVKTDDPKLTPPTRA 297
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
MK SME++IHHFKLYTEGY VP GE+Y AVEAPKGEFGVYL S GGN+PYRC+I+APG+
Sbjct: 298 KMKESMEAMIHHFKLYTEGYDVPAGEIYKAVEAPKGEFGVYLYSTGGNRPYRCRIKAPGF 357
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ ++F+ KGH +ADV I+ +LDIVFGE+DR
Sbjct: 358 AHLQGLDFMSKGHLMADVITIIATLDIVFGEIDR 391
>gi|296040739|gb|ADG85337.1| NADH dehydrogenase subunit 7 [Silene latifolia]
Length = 394
Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats.
Identities = 256/394 (64%), Positives = 318/394 (80%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
KK+ ++FT+NFGPQHPAAHGVLRL+LE++GE+VER +PHIGLLHRGTEKLIE KT+LQA+
Sbjct: 5 KKQIKNFTLNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQAL 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M QEHAY+LAVE+LL E+P+R Q IRVL+ EI RIL+HLL +TT AMD
Sbjct: 65 PYFDRLDYVSMMAQEHAYSLAVERLLNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTP LW FEEREKL+ FYER SG+RMHA++ RPGGV QD+P L DI + F S
Sbjct: 125 VGALTPFLWAFEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCRDIDSFTQQFAS 184
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++++ ++LTGNRI+KQR V+IGTV + A WGFSGVM+RGSG WDLR++ PY+ Y +
Sbjct: 185 RIDELEEMLTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGSGVCWDLRRAAPYDVYHQ 244
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LDFD+P+G GDCYDRY +R+ EMR+SV+II QC+N++ G + A D K+ PP R
Sbjct: 245 LDFDVPVGTRGDCYDRYCIRIEEMRQSVRIIVQCLNKM----PSGMIKADDRKLCPPSRY 300
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
MK SMESLIHHF+LYTEG+ VP Y AVEAPKGEFGV+L+S+G N+PYRCKIRAPG+
Sbjct: 301 RMKLSMESLIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGF 360
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ ++F+ K H LADV I+G+ DIVFGEVDR
Sbjct: 361 AHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 394
>gi|281352149|gb|EFB27733.1| hypothetical protein PANDA_018833 [Ailuropoda melanoleuca]
Length = 432
Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats.
Identities = 246/389 (63%), Positives = 311/389 (79%), Gaps = 4/389 (1%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
+ T+NFGPQHPAAHGVLRL++EL GE+V + DPHIGLLHRGTEKLIE KT+LQA+PYFDR
Sbjct: 48 NLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDR 107
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
LDYV+ M E AY+LAVEKLL I+ P R Q IRVL+ EI R+L+H++ VTT A+D+GA+T
Sbjct: 108 LDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRLLNHIMAVTTHALDIGAMT 167
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
P W FEEREK+ FYER SG+RMHAAY RPGGVHQD+P L++DI + +F ++++
Sbjct: 168 PFFWMFEEREKMFEFYERVSGARMHAAYVRPGGVHQDLPLGLLDDIYEFSKNFSLRVDEL 227
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
++LT NRI++ R V+IG V EDA +GFSGVM+RGSG WDLRK+QPY+ Y +++FD+
Sbjct: 228 EEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDV 287
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
P+G GDCYDRYL R+ EMR+S++II QC+N++ G + D K+ PPKRA+MK S
Sbjct: 288 PVGSRGDCYDRYLCRVEEMRQSLRIIEQCLNKM----PPGEIKVDDAKVSPPKRAEMKTS 343
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
MESLIHHFKLYTEGY VP G Y A+EAPKGEFGVYL+SDG ++PYRCKI+APG+AHL
Sbjct: 344 MESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAG 403
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 404 LDKMSKGHMLADVVAIIGTQDIVFGEVDR 432
>gi|16126195|ref|NP_420759.1| NADH dehydrogenase subunit D [Caulobacter crescentus CB15]
gi|81782639|sp|Q9A6X4|NUOD_CAUCR RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|13423411|gb|AAK23927.1| NADH dehydrogenase I, D subunit [Caulobacter crescentus CB15]
Length = 398
Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats.
Identities = 298/396 (75%), Positives = 343/396 (86%), Gaps = 2/396 (0%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + R F INFGPQHPAAHGVLRL+LELDGEIVERVDPHIGLLHRGTEKL+E +T+LQ
Sbjct: 5 IPETPVRKFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLMEARTYLQ 64
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PYFDRLDYVAPMNQEHA+ LA+EKLLG+E+PIRGQ+IRVLYSEIGRIL+HLLNVTTQA
Sbjct: 65 NIPYFDRLDYVAPMNQEHAFCLAIEKLLGVEVPIRGQIIRVLYSEIGRILNHLLNVTTQA 124
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLMVFYERA G+R+H+ YFRPGGVHQD+PPELVEDI W +F
Sbjct: 125 MDVGALTPPLWGFEEREKLMVFYERACGARLHSNYFRPGGVHQDLPPELVEDIDTWAKAF 184
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P +DI L+T NRIFKQRNV+IG V E+A WGFSGVM+RGSG AWDLR+SQPYE Y
Sbjct: 185 PKICDDIEGLITDNRIFKQRNVDIGVVSKEEAISWGFSGVMVRGSGIAWDLRRSQPYENY 244
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
++ +FDIP+GK+GDCYDRYL RM EMRES KIIRQ L + GPV + D K+ PP+
Sbjct: 245 NDFEFDIPLGKNGDCYDRYLCRMQEMRESTKIIRQACEML--RKTHGPVLSEDNKVAPPR 302
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
RA+MKRSME+LIHHFKLYTEG+ P GEVYA VEAPKGEFGV+++SDG NKPYRCKIRAP
Sbjct: 303 RAEMKRSMEALIHHFKLYTEGFKTPAGEVYACVEAPKGEFGVFVVSDGTNKPYRCKIRAP 362
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ HL AM+++ +GHQLADVSAILGSLDIVFGE+DR
Sbjct: 363 GFPHLAAMDWMNRGHQLADVSAILGSLDIVFGEIDR 398
>gi|146278041|ref|YP_001168200.1| NADH dehydrogenase subunit D [Rhodobacter sphaeroides ATCC 17025]
gi|218534435|sp|A4WU31|NUOD_RHOS5 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|145556282|gb|ABP70895.1| NADH dehydrogenase I, D subunit [Rhodobacter sphaeroides ATCC
17025]
Length = 402
Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats.
Identities = 287/394 (72%), Positives = 339/394 (86%), Gaps = 3/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++K R+F INFGPQHPAAHGVLRL+LELDGE+VER DPHIGLLHRGTEKL+ET+T+LQ +
Sbjct: 12 EQKLRNFNINFGPQHPAAHGVLRLVLELDGEVVERCDPHIGLLHRGTEKLMETRTYLQNL 71
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYVAPMNQEHA+ LA+E+L G+++P R LIRVLYSEIGR+L+HLLNVTTQAMD
Sbjct: 72 PYFDRLDYVAPMNQEHAWCLAIERLTGVQVPRRASLIRVLYSEIGRVLNHLLNVTTQAMD 131
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTPPLWGFEEREKLMVFYERASG+R+HAAYFRPGGVHQD+ P L+EDI W + FP
Sbjct: 132 VGALTPPLWGFEEREKLMVFYERASGARLHAAYFRPGGVHQDLTPRLIEDIEEWAEHFPK 191
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+D+ LLT NRIFKQRNV+IG V +D WGFSGVM+RGSG AWDLR+SQPYECY E
Sbjct: 192 VLDDLDGLLTENRIFKQRNVDIGVVTEKDILDWGFSGVMVRGSGLAWDLRRSQPYECYDE 251
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF IP+GK+GDCYDRYL RM EMR+S +II+QC+ +L + + KI PP RA
Sbjct: 252 FDFQIPVGKNGDCYDRYLCRMEEMRQSTRIIQQCLAKLRVEKGDV---LARGKITPPPRA 308
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SME+LIHHFKLYTEG+HVP GEVYAAVEAPKGEFGVYL++DG N+PYR KIRAPG+
Sbjct: 309 EMKTSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKGEFGVYLVADGTNRPYRAKIRAPGF 368
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQA++++ KGH LADVSAI+G+LD+VFGE+DR
Sbjct: 369 LHLQAIDYIAKGHLLADVSAIIGTLDVVFGEIDR 402
>gi|239947494|ref|ZP_04699247.1| NADH-quinone oxidoreductase subunit D [Rickettsia endosymbiont of
Ixodes scapularis]
gi|239921770|gb|EER21794.1| NADH-quinone oxidoreductase subunit D [Rickettsia endosymbiont of
Ixodes scapularis]
Length = 391
Score = 451 bits (1160), Expect = e-125, Method: Composition-based stats.
Identities = 258/394 (65%), Positives = 314/394 (79%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ T+N GPQHPA HGVLRLIL++DGE+V DPHIGLLHRGTEKLIE KT+LQA+
Sbjct: 2 TNNTKTITLNLGPQHPATHGVLRLILKMDGEVVNNADPHIGLLHRGTEKLIEHKTYLQAI 61
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+PM QEHA+ALAVE LL EIP R Q IRVL+SE+ RIL+H LN+++QA+D
Sbjct: 62 PYFDRLDYVSPMCQEHAFALAVESLLECEIPRRAQFIRVLFSELTRILNHTLNISSQALD 121
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA TP LW FEEREK+M FYER SGSRMH+ YFRPGGV +D+P L+EDI + + FP
Sbjct: 122 IGATTPLLWLFEEREKIMEFYERVSGSRMHSNYFRPGGVVEDLPDGLLEDIDKFIEQFPP 181
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+DI LL NR++KQR V+IG V ++A WGFSG M+RGSG AWDLRKS PY+ Y E
Sbjct: 182 KLHDIESLLNENRLWKQRLVDIGVVSQKEAMNWGFSGPMLRGSGIAWDLRKSNPYDVYDE 241
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+DF +PIGK+GDCYDRY VRM+EM ESVKII+QC+ ++ G V DPK+ PP RA
Sbjct: 242 MDFKVPIGKNGDCYDRYFVRMLEMYESVKIIKQCIEKM----PKGAVKTDDPKLTPPTRA 297
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
MK SME++IHHFKLYTEGY VP GE Y AVEAPKGEFGVYL S G N+PYRC+I+APG+
Sbjct: 298 KMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGEFGVYLYSTGNNRPYRCRIKAPGF 357
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ ++F+ KGH +ADV I+ +LDIVFGE+DR
Sbjct: 358 AHLQGLDFMSKGHLMADVITIIATLDIVFGEIDR 391
>gi|149914580|ref|ZP_01903110.1| NADH-quinone oxidoreductase chain D [Roseobacter sp. AzwK-3b]
gi|149811373|gb|EDM71208.1| NADH-quinone oxidoreductase chain D [Roseobacter sp. AzwK-3b]
Length = 405
Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats.
Identities = 287/394 (72%), Positives = 336/394 (85%), Gaps = 1/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++K R+F +NFGPQHPAAHGVLRL+LELDGEIVER DPHIGLLHRGTEKL+E++T+LQ +
Sbjct: 13 EQKIRNFNLNFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNL 72
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYVAPMNQEHA+ LA+EKL G+E+P R LIRVLYSEIGRIL+HLLNVTTQAMD
Sbjct: 73 PYFDRLDYVAPMNQEHAWCLAIEKLTGVEVPRRASLIRVLYSEIGRILNHLLNVTTQAMD 132
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTPPLWGFEEREKLMVFYERA G+R+HAAYFRPGGVHQD+P EL++DI W FP
Sbjct: 133 VGALTPPLWGFEEREKLMVFYERACGARLHAAYFRPGGVHQDLPTELIDDIETWAHEFPR 192
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L DI LLT NRIFKQRN +IG V +D WGFSGVM+RGSG AWDLR++QPYECY E
Sbjct: 193 VLADIDGLLTENRIFKQRNADIGVVTEKDILDWGFSGVMVRGSGLAWDLRRAQPYECYDE 252
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF IP+GK+GDCYDRYLVRM EMR+S+ II QC+ +L + G V + KI PP R
Sbjct: 253 FDFQIPVGKNGDCYDRYLVRMEEMRQSLSIIHQCIAKLRAPDGQGDVL-ARGKITPPSRG 311
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SME+LIHHFKLYTEG+ VP GEVYAAVEAPKGEFGVYL++DG NKPYR K+RAPG+
Sbjct: 312 EMKTSMEALIHHFKLYTEGFRVPEGEVYAAVEAPKGEFGVYLVADGTNKPYRAKLRAPGF 371
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQAM+++ GHQLADV+AI+G++D+VFGE+DR
Sbjct: 372 LHLQAMDYVAGGHQLADVAAIIGTMDVVFGEIDR 405
>gi|320163618|gb|EFW40517.1| NADH dehydrogenase iron-sulfur protein 2 [Capsaspora owczarzaki
ATCC 30864]
Length = 472
Score = 450 bits (1159), Expect = e-124, Method: Composition-based stats.
Identities = 254/396 (64%), Positives = 312/396 (78%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ ++ ++T+NFGPQHPAAHGVLRL+LELDGE+V R DPHIGLLHRGTEKLIE KT+ Q
Sbjct: 81 VPERHVSNYTMNFGPQHPAAHGVLRLVLELDGEVVHRADPHIGLLHRGTEKLIEYKTYTQ 140
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+ M E AY+LAVEKLL I+ P R Q IRVL+ EI R+L+H++ VTT A
Sbjct: 141 ALPYFDRLDYVSMMANEQAYSLAVEKLLNIQAPPRAQYIRVLFGEITRLLNHIMAVTTHA 200
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTP LW FEEREK+M FYERASG+R+HAAY RPGGV D+P L+EDI + F
Sbjct: 201 MDVGALTPFLWMFEEREKMMEFYERASGARLHAAYVRPGGVALDLPLGLMEDIYNFIKPF 260
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
S ++++ D+LT NRI+KQR V+IG V A WGFSGVM+RGSG AWDLRK QPY+ Y
Sbjct: 261 SSRIDEMEDMLTENRIWKQRLVDIGIVTARQALDWGFSGVMLRGSGIAWDLRKVQPYDGY 320
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+ FD+P+GK GD YDRYL R+ EMR+S++II Q +N + G V D KI PP+
Sbjct: 321 EKFKFDVPVGKRGDSYDRYLCRVEEMRQSIRIIMQALNDM----PTGEVRIDDNKITPPR 376
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
RA+MK SME+LIHHFKL+TEGY VP G Y AVEAPKGEFGVYL+SDG ++PYRCKIRAP
Sbjct: 377 RAEMKESMEALIHHFKLFTEGYVVPAGATYTAVEAPKGEFGVYLVSDGSSRPYRCKIRAP 436
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHL ++F+ +GH +ADV A++G+ DIVFGEVDR
Sbjct: 437 GFAHLAGLDFMSRGHMIADVVALIGTQDIVFGEVDR 472
>gi|260790071|ref|XP_002590067.1| hypothetical protein BRAFLDRAFT_114745 [Branchiostoma floridae]
gi|229275255|gb|EEN46078.1| hypothetical protein BRAFLDRAFT_114745 [Branchiostoma floridae]
Length = 469
Score = 450 bits (1159), Expect = e-124, Method: Composition-based stats.
Identities = 244/392 (62%), Positives = 312/392 (79%), Gaps = 4/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ + T+NFGPQHPAAHGVLRL++EL GE V+R DPHIGLLHRGTEKLIE KT+LQA+PY
Sbjct: 82 EVSNLTVNFGPQHPAAHGVLRLVMELSGESVKRCDPHIGLLHRGTEKLIEYKTYLQALPY 141
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
FDRLDYV+ M E Y+LAVEKLLGIEIP R + IRV++ EI RIL+H++ V T A+DVG
Sbjct: 142 FDRLDYVSMMCNEQCYSLAVEKLLGIEIPERAKFIRVMFGEITRILNHIMGVGTHALDVG 201
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A+TP W FEEREK+M FYER SG+RMHAAY RPGGV QD+P L++DI + F +
Sbjct: 202 AMTPFFWMFEEREKMMEFYERVSGARMHAAYVRPGGVQQDLPLGLMDDIYDFITKFAQRV 261
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+++ ++LT NRI++ R ++IG + EDA +GFSGVM+RGSG WDLRK QPY+ Y +++
Sbjct: 262 DEVEEMLTNNRIWRNRTIDIGVISAEDAINYGFSGVMLRGSGIKWDLRKVQPYDAYDQVE 321
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FD+PIG+ GDCYDRYL+R+ EMR+S+ II QC+N++ G + D KI PP+RA+M
Sbjct: 322 FDVPIGRKGDCYDRYLIRVEEMRQSLHIIHQCLNKM----PEGEIKVDDAKITPPRRAEM 377
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K SME+LIHHFKLYTEGY VP G Y A+EAPKGEFGVYL+SDG ++PYRCKI+APG+AH
Sbjct: 378 KESMEALIHHFKLYTEGYMVPPGSTYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAH 437
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
L ++ + +GH LADV AI+G+LD+VFGE+DR
Sbjct: 438 LAGLDKVSQGHMLADVVAIIGTLDVVFGEIDR 469
>gi|61097780|emb|CAI64462.1| NADH-Ubiquinone oxidoreductase subunit 7 [Nicotiana sylvestris]
Length = 394
Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats.
Identities = 256/393 (65%), Positives = 318/393 (80%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
++ ++FT+NFGPQHPAAHGVLRL+LE++GE+VER +PHIGLLHRGTEKLIE KT+LQA+P
Sbjct: 6 RQIKNFTLNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQALP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M QEHAY+LAVE+LL E+P+R Q IRVL+ EI RIL+HLL +TT AMDV
Sbjct: 66 YFDRLDYVSMMAQEHAYSLAVERLLNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMDV 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP LW FEEREKL+ FYER SG+RMHA++ RPGGV QD+P L DI + F S
Sbjct: 126 GALTPFLWAFEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCIDIDSFTQQFASR 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
++++ ++LTGNRI+KQR V+IGTV + A WGFSGVM+RGSG WDLRK+ PY+ Y +L
Sbjct: 186 IDELEEMLTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGSGVCWDLRKAAPYDVYDQL 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DFDIP+G GDCYDRY +R+ EMR+SV+II QC+N++ G + A D K+ PP R+
Sbjct: 246 DFDIPVGTRGDCYDRYCIRIEEMRQSVRIIVQCLNQM----PSGMIKADDRKLCPPSRSR 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK SMESLIHHF+LYTEG+ VP Y AVEAPKGEFGV+L+S+G N+PYRCKIRAPG+A
Sbjct: 302 MKLSMESLIHHFELYTEGFSVPALSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFA 361
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ ++F+ K H LADV I+G+ DIVFGEVDR
Sbjct: 362 HLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 394
>gi|34580593|ref|ZP_00142073.1| NADH dehydrogenase I chain D [Rickettsia sibirica 246]
gi|28261978|gb|EAA25482.1| NADH dehydrogenase I chain D [Rickettsia sibirica 246]
Length = 391
Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats.
Identities = 257/394 (65%), Positives = 313/394 (79%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ T+N GPQHPA HGVLRLILE+DGE+V DPHIGLLHRGTEKLIE KT+LQA+
Sbjct: 2 TNNTKTITLNLGPQHPATHGVLRLILEMDGEVVNNADPHIGLLHRGTEKLIEHKTYLQAI 61
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+PM QEHA+ALAVE LL E+P R Q IRVL+SE+ RIL+H LN+ +QA+D
Sbjct: 62 PYFDRLDYVSPMCQEHAFALAVESLLECEVPRRAQFIRVLFSELTRILNHTLNIGSQALD 121
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA TP LW FEEREK+M FYE SGSRMH+ YFRPGGV D+P L+EDI + + FPS
Sbjct: 122 IGATTPLLWLFEEREKIMEFYEHVSGSRMHSNYFRPGGVAADLPEGLLEDIDKFIEQFPS 181
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+DI LL NR++KQR V+IG V ++A WGFSG M+RGSG AWDLRKS PY+ Y E
Sbjct: 182 KLHDIESLLNENRLWKQRLVDIGVVSQKEAMDWGFSGPMLRGSGIAWDLRKSNPYDVYDE 241
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+DF +PIGK+GDCYDRY VRM+EM ES+KII+QC+ ++ G + DPK+ PP RA
Sbjct: 242 MDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQCIEKM----PKGAIKTDDPKLTPPTRA 297
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
MK SME++IHHFKLYTEGY VP GE Y AVEAPKGEFGVYL S GGN+PYRC+I+APG+
Sbjct: 298 KMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGEFGVYLYSQGGNRPYRCRIKAPGF 357
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ ++F+ KGH +ADV I+ +LDIVFGE+DR
Sbjct: 358 AHLQGLDFMSKGHLMADVITIIATLDIVFGEIDR 391
>gi|226482320|emb|CAX73759.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2 [Schistosoma
japonicum]
Length = 460
Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats.
Identities = 243/392 (61%), Positives = 308/392 (78%), Gaps = 4/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ +S +NFGPQHPAAHGVLRLI+ELDGE + R+DPHIGLLHRGTEKLIE KT+ QA+PY
Sbjct: 73 EVQSVHLNFGPQHPAAHGVLRLIMELDGESIIRLDPHIGLLHRGTEKLIEYKTYTQALPY 132
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
FDRLDY + M E YALAVEKLL IE+P R + IR L++EI RI++H L V + +D+G
Sbjct: 133 FDRLDYASMMCNEQCYALAVEKLLNIEVPPRAKYIRTLFAEITRIMNHCLAVGSTILDIG 192
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A+TP W FEEREK+ FYER SG+RMHAAY RPGGV+ D+P L++DI + FP L
Sbjct: 193 AITPIFWLFEEREKMFEFYERVSGARMHAAYIRPGGVYLDMPLGLMDDIYRFIQKFPQRL 252
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
++ISDLL N I+ R ++G V EDA GFSGVM+RGSG WDLRK+QPY+ Y+++D
Sbjct: 253 DEISDLLLDNPIWITRTKDVGVVSAEDALDLGFSGVMLRGSGIKWDLRKTQPYDAYADMD 312
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FD+PIG HGDCYDR+++RM EMR+S++II QC+N++ G + D KI PPKRA+M
Sbjct: 313 FDVPIGVHGDCYDRFMIRMEEMRQSLRIIEQCLNKM----PKGEIRVDDAKICPPKRAEM 368
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K SME+LIHHFKL++EGY VP G Y A+EAPKGEFGVYL+SDG NKPYRCKI+APG++H
Sbjct: 369 KHSMEALIHHFKLFSEGYLVPPGSTYTAIEAPKGEFGVYLVSDGTNKPYRCKIKAPGFSH 428
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
L A++ +C+G +ADV A++G+LDIVFGEVDR
Sbjct: 429 LAAIDKMCRGFLIADVVAVIGTLDIVFGEVDR 460
>gi|147705294|sp|Q68X19|NUOD_RICTY RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
Length = 389
Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats.
Identities = 258/390 (66%), Positives = 316/390 (81%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
++ T+N GPQHPA HGVLRLILE+DGE+V DPHIGLLHRGTEKLIE KT+LQA+PYFD
Sbjct: 4 KTITLNLGPQHPATHGVLRLILEMDGEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFD 63
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYV+PM QEHA+ALAVE LL +P R Q IRVL+SE+ RIL+H LN+ +QA+D+GA
Sbjct: 64 RLDYVSPMCQEHAFALAVESLLECSVPRRAQFIRVLFSELTRILNHTLNIGSQALDIGAT 123
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP LW FEEREK+M FYER SGSRMHA YFRPGGV +D+P +L+EDI + + FPS LND
Sbjct: 124 TPLLWLFEEREKIMEFYERVSGSRMHANYFRPGGVAEDLPEKLLEDINKFIEQFPSKLND 183
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
I +LL NR++KQR V+IG V +DA WGFSG M+RGSG AWDLRKS PY+ Y E+DF+
Sbjct: 184 IENLLNENRLWKQRLVDIGVVSQKDAMDWGFSGPMLRGSGIAWDLRKSNPYDVYDEMDFE 243
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+P+GK+GDCYDRYLVR++EM ES+KII+QC+ ++ G V +PK+ PP R MK
Sbjct: 244 VPVGKNGDCYDRYLVRILEMYESIKIIKQCIAKM----PKGQVKTDNPKLTPPTREKMKE 299
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
SME++IHHFKLYTEGY VP+GE Y AVEAPKGEFGVYL S GGNKPYRC+I+APG+AHLQ
Sbjct: 300 SMEAMIHHFKLYTEGYDVPIGETYKAVEAPKGEFGVYLYSQGGNKPYRCRIKAPGFAHLQ 359
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ F+ KGH ++DV I+ +LDIVFGE+DR
Sbjct: 360 GLNFMSKGHLISDVITIIATLDIVFGEIDR 389
>gi|83858411|ref|ZP_00951933.1| NADH dehydrogenase delta subunit [Oceanicaulis alexandrii HTCC2633]
gi|83853234|gb|EAP91086.1| NADH dehydrogenase delta subunit [Oceanicaulis alexandrii HTCC2633]
Length = 396
Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats.
Identities = 291/396 (73%), Positives = 332/396 (83%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + R+FTINFGP HPAAHGVLR++LELDGE+VERVDPHIGLLHRGTEKL+E KT+LQ
Sbjct: 1 MAETDIRNFTINFGPVHPAAHGVLRMVLELDGEVVERVDPHIGLLHRGTEKLLEHKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ YFDRLDYVAPMNQEHA+ LA+EKL GI +P R +RVLYSEIGRIL+HLLNVTTQA
Sbjct: 61 GIGYFDRLDYVAPMNQEHAFCLAIEKLAGIPVPKRASYVRVLYSEIGRILNHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLM FYERASG+R+HA YFRPGGVHQD+P EL++DI WC+ F
Sbjct: 121 MDVGALTPPLWGFEEREKLMGFYERASGARLHAHYFRPGGVHQDLPQELIDDIVAWCEQF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P ++D+ LLT NRIFK RNV+IG V ++A WGFSGVM+RGSG AWDLR+SQPYE Y
Sbjct: 181 PQHVDDLETLLTENRIFKARNVDIGVVSKQEALEWGFSGVMVRGSGLAWDLRRSQPYEVY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
EL+F IP+GK+GD YDRYL RM EMRESVKI++QC + L + G V D K PP+
Sbjct: 241 DELEFQIPLGKNGDNYDRYLCRMEEMRESVKIMKQCCDWLSREENQGDVLPVDTKFAPPR 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
RA+MKRSME+LI HFKLYTEG HVP G+ YAAVEAPKGEFGVYLI DG NKPYR KIRAP
Sbjct: 301 RAEMKRSMEALIQHFKLYTEGVHVPEGQYYAAVEAPKGEFGVYLIGDGTNKPYRLKIRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ HLQAM+ L KGH LADVSAILGSLDIVFGE+DR
Sbjct: 361 GFPHLQAMDHLNKGHMLADVSAILGSLDIVFGEIDR 396
>gi|289742785|gb|ADD20140.1| NADH-ubiquinone oxidoreductase NDUFS2/49 kDa subunit [Glossina
morsitans morsitans]
Length = 461
Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats.
Identities = 244/394 (61%), Positives = 311/394 (78%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+KK R+ TINFGPQHPAAHGVLRL++ELDGE V R DPHIGLLHRGTEKLIE KT+ QA+
Sbjct: 72 EKKIRNLTINFGPQHPAAHGVLRLVMELDGETVTRCDPHIGLLHRGTEKLIEYKTYTQAL 131
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E Y++AVEKLL IE+P+R + IR L++E+ R+L+H++ + T A+D
Sbjct: 132 PYFDRLDYVSMMCNEQCYSMAVEKLLNIEVPLRAKYIRTLFAELTRLLNHIMAIGTHALD 191
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTP W FEEREK+M FYERASG+RMHAAY RPGGV D+P L++DI + F
Sbjct: 192 VGALTPFFWLFEEREKMMEFYERASGARMHAAYIRPGGVSLDMPIGLMDDIYEFASKFGE 251
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+++ D+LT NRI+ QR V+IGTV E+A +GFSGVM+RGSG WDLRK QPY+ Y
Sbjct: 252 RLDEVEDVLTTNRIWVQRTVDIGTVTAEEALNYGFSGVMLRGSGIKWDLRKQQPYDAYDL 311
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++FDIPIG GDCYDRYL R+ EMR+S++II QC+N++ G + D KI PP RA
Sbjct: 312 VEFDIPIGTKGDCYDRYLCRLEEMRQSLRIIDQCLNQM----PEGEIKTDDAKIAPPSRA 367
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SME+LIHHFKL+++G+ VP G Y A+EAPKGEFGVYL++DG ++PYRCKI+APG+
Sbjct: 368 EMKVSMEALIHHFKLFSQGFQVPPGTTYTAIEAPKGEFGVYLVADGSSRPYRCKIKAPGF 427
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL A+ + + H LADV AI+G+LD+VFGE+DR
Sbjct: 428 AHLAALNHVGRQHMLADVVAIIGTLDVVFGEIDR 461
>gi|198458678|ref|XP_002136151.1| CG1970 [Drosophila pseudoobscura pseudoobscura]
gi|198142383|gb|EDY71141.1| CG1970 [Drosophila pseudoobscura pseudoobscura]
Length = 440
Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats.
Identities = 244/394 (61%), Positives = 308/394 (78%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+K R+ T+NFGPQHPAAHGVLRL+LELDGE V R DPHIGLLHRGTEKLIE KT+ QA+
Sbjct: 51 EKSVRNLTLNFGPQHPAAHGVLRLVLELDGETVMRADPHIGLLHRGTEKLIEYKTYTQAL 110
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E Y+LAVEKLL I++P+R + IR L++EI RIL+H++ V T A+D
Sbjct: 111 PYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRILNHIMAVGTHALD 170
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTP W FEEREK+M FYER SG+RMHAAY RPGGV D+P L++DI + F
Sbjct: 171 VGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPIGLMDDIYEFASKFAE 230
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+++ D+L+ NRI+ QR +IG V E+A +GFSGVM+RGSG WDLRK QPY+ Y
Sbjct: 231 RLDEVEDVLSTNRIWVQRTEDIGIVTAEEALNYGFSGVMLRGSGIKWDLRKQQPYDAYHL 290
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+DFD+PIG GDCYDRYL R+ EMR+S++II QC+N++ G + D K+ PP R+
Sbjct: 291 VDFDVPIGTKGDCYDRYLCRIEEMRQSLRIIDQCLNQMPA----GEIKTDDAKVTPPSRS 346
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SME+LIHHFKL+T+G+ VP G Y A+EAPKGEFGVYL+SDG ++PYRCKI+APG+
Sbjct: 347 EMKTSMEALIHHFKLFTQGFQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGF 406
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL A+E + K H LADV AI+G+LD+VFGE+DR
Sbjct: 407 AHLAALEKIGKQHMLADVVAIIGTLDVVFGEIDR 440
>gi|224824820|ref|ZP_03697927.1| NADH dehydrogenase I, D subunit [Lutiella nitroferrum 2002]
gi|224603313|gb|EEG09489.1| NADH dehydrogenase I, D subunit [Lutiella nitroferrum 2002]
Length = 417
Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats.
Identities = 243/418 (58%), Positives = 308/418 (73%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ R++T+NFGPQHPAAHGVLRL+LELDGE+++R DPH+GLLHRGTEKL E+KTF+Q++P
Sbjct: 2 AEIRNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHVGLLHRGTEKLAESKTFIQSLP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M+ EHAY LA+EKLLG+E+P R Q IRV+++EI RIL+HLL + A+D+
Sbjct: 62 YMDRLDYVSMMSNEHAYCLAIEKLLGVEVPERAQYIRVMFAEITRILNHLLWIGAHAIDI 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP---------------- 167
GA+T L+ F ERE LM YE SG+RMHAAYFRPGGV++D+P
Sbjct: 122 GAMTVFLYAFREREDLMDCYEAVSGARMHAAYFRPGGVYRDLPDSMPQYTVSKIKNAREL 181
Query: 168 ---------ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
+++ I + FP+ +++ LLT NRI+KQR V IG V E A GFS
Sbjct: 182 AKLNEGRQGSMLDFIDAFTQRFPTYVDEYETLLTDNRIWKQRTVGIGVVSPERARNLGFS 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG WDLRK QPY+ Y +DFDIP+G +GDCYDRYLVR+ EMR+S +I++QCV+
Sbjct: 242 GPMLRGSGIEWDLRKKQPYDVYDRMDFDIPVGVNGDCYDRYLVRIEEMRQSNRIVKQCVD 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L K GPV + K+ PP R MK +ME LIHHFKL+TEG HVP GE YAAVE PKG
Sbjct: 302 WL--KKNPGPVITDNFKVAPPSREGMKSNMEELIHHFKLFTEGMHVPEGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YL+SDG NKPYR KIRAPGYAHL A++ + +GH +ADV AI+G+ DIVFGE+DR
Sbjct: 360 EFGIYLVSDGANKPYRLKIRAPGYAHLAALDEMSRGHMIADVVAIIGTQDIVFGEIDR 417
>gi|238651037|ref|YP_002916894.1| NADH dehydrogenase subunit D [Rickettsia peacockii str. Rustic]
gi|238625135|gb|ACR47841.1| NADH dehydrogenase subunit D [Rickettsia peacockii str. Rustic]
Length = 391
Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats.
Identities = 256/394 (64%), Positives = 312/394 (79%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ T+N GPQHPA HGVLRLILE+DGE+V DPHIGLLHRGTEKLIE KT+LQA+
Sbjct: 2 TNNTKTITLNLGPQHPATHGVLRLILEMDGEVVNNADPHIGLLHRGTEKLIEHKTYLQAI 61
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+PM QEHA+ALAVE LL E+P R Q IRVL+SE+ RIL+H LN+ +QA+D
Sbjct: 62 PYFDRLDYVSPMCQEHAFALAVESLLECEVPRRAQFIRVLFSELTRILNHTLNIGSQALD 121
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA TP LW FEEREK+M FYE SGSRMH+ YFRPGGV D+P L+EDI + + FP
Sbjct: 122 IGATTPLLWLFEEREKIMEFYEHVSGSRMHSNYFRPGGVAADLPEGLLEDIDKFIEQFPP 181
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+DI LL NR++KQR V+IG V ++A WGFSG M+RGSG AWDLRKS PY+ Y E
Sbjct: 182 KLHDIESLLNENRLWKQRLVDIGVVSQKEAMDWGFSGPMLRGSGIAWDLRKSNPYDVYDE 241
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+DF +PIGK+GDCYDRY VRM+EM ES+KII+QC+ ++ G + DPK+ PP RA
Sbjct: 242 MDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQCIEKM----PKGAIKTDDPKLTPPTRA 297
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
MK SME++IHHFKLYTEGY VP GE Y AVEAPKGEFGVYL S GGN+PYRC+I+APG+
Sbjct: 298 KMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGEFGVYLYSQGGNRPYRCRIKAPGF 357
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ ++F+ KGH +ADV I+ +LDIVFGE+DR
Sbjct: 358 AHLQGLDFMSKGHLMADVITIIATLDIVFGEIDR 391
>gi|163738800|ref|ZP_02146214.1| NADH dehydrogenase subunit D [Phaeobacter gallaeciensis BS107]
gi|161388128|gb|EDQ12483.1| NADH-quinone oxidoreductase subunit D [Phaeobacter gallaeciensis
BS107]
Length = 404
Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats.
Identities = 289/394 (73%), Positives = 339/394 (86%), Gaps = 3/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++K R+F INFGPQHPAAHGVLRL+LELDGEIVER DPHIGLLHRGTEKL+E++T+LQ +
Sbjct: 14 EQKIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNL 73
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYVAPMNQEHA+ LA+EKL G+E+P R LIRVLYSEIGRIL+HLLNVTTQAMD
Sbjct: 74 PYFDRLDYVAPMNQEHAWCLAIEKLTGVEVPRRASLIRVLYSEIGRILNHLLNVTTQAMD 133
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTPPLWGFEEREKLM+FYERA G+R+HAAYFRPGGVHQD+P L++DI W +FP+
Sbjct: 134 VGALTPPLWGFEEREKLMIFYERACGARLHAAYFRPGGVHQDLPDALIDDIEAWTHTFPA 193
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++DI LLT NRIFKQRN +IG V ED +GFSGVM+RGSG AWDLR+SQPYECY E
Sbjct: 194 VMDDIDGLLTENRIFKQRNADIGVVTEEDILNYGFSGVMVRGSGLAWDLRRSQPYECYDE 253
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF IP+GK+GDCYDRYLVRM EMR+S+ IIRQC+ +L + K+ PPKR
Sbjct: 254 FDFQIPVGKNGDCYDRYLVRMEEMRQSLSIIRQCIGKLRETPGD---ILARGKLTPPKRG 310
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
DMK SMESLIHHFKLYTEG+HVP GEVYAAVEAPKGEFGVYL++DG NKPYR K+RAPG+
Sbjct: 311 DMKTSMESLIHHFKLYTEGFHVPAGEVYAAVEAPKGEFGVYLVADGTNKPYRAKLRAPGF 370
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQAM+++ KGHQLADV+AI+G++D+VFGE+DR
Sbjct: 371 LHLQAMDYVAKGHQLADVAAIIGTMDVVFGEIDR 404
>gi|148266251|ref|YP_001232957.1| NADH dehydrogenase I, D subunit [Geobacter uraniireducens Rf4]
gi|218534410|sp|A5G9B6|NUOD_GEOUR RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|146399751|gb|ABQ28384.1| NADH dehydrogenase subunit D [Geobacter uraniireducens Rf4]
Length = 390
Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats.
Identities = 199/391 (50%), Positives = 271/391 (69%), Gaps = 4/391 (1%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ TIN GPQHP+ HGVLRLI+ELDGEI+++V PHIG LHRG EKL E +T+ Q +P
Sbjct: 4 TEIMTINMGPQHPSTHGVLRLIVELDGEIIQKVTPHIGYLHRGIEKLSEHRTYHQTIPLT 63
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DRLDY+APM+ Y LAVEKLLGI++P R Q+IRV+ +E+ R+ SHL+ + A+D+GA
Sbjct: 64 DRLDYLAPMSNNLGYVLAVEKLLGIDVPERAQVIRVIMAELTRLKSHLVWIACHALDIGA 123
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+T L+ F ERE +M YE SG+RM + +FR GG+ +DIP + D+FP +
Sbjct: 124 MTVFLYAFRERENIMDIYEMVSGARMTSNFFRVGGLSKDIPEGFTAAVREVLDTFPGHFD 183
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
LLT N I+ QR + G + EDA +G +G +RGSG WDLR+ PY Y + DF
Sbjct: 184 TYEGLLTKNTIWLQRTIGNGVISAEDAIDYGITGPALRGSGVDWDLRRDNPYSGYEKYDF 243
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+P+G++ D +DRY VR++EMRESVKIIRQ ++ K GPV A +P+I P + ++
Sbjct: 244 KVPVGENCDTFDRYKVRLVEMRESVKIIRQALD----SLKPGPVLADEPQICYPPKENVY 299
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
S+E LIHHFK+ +EG+ P GEVY +VEAPKGE G YL+SDG KPYR +IR P + +L
Sbjct: 300 NSIEGLIHHFKIASEGFSTPEGEVYQSVEAPKGELGYYLVSDGSTKPYRMRIRPPSFVNL 359
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
QA+E + KG +AD+ A++G+LDIV GE+DR
Sbjct: 360 QAIEKMAKGAMIADLVAVIGTLDIVLGEIDR 390
>gi|299830470|ref|YP_003734841.1| NADH dehydrogenase subunit 7 [Pythium ultimum]
gi|269810847|gb|ACZ43876.1| NADH dehydrogenase subunit 7 [Pythium ultimum]
Length = 392
Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats.
Identities = 259/396 (65%), Positives = 317/396 (80%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M KK ++F+INFGPQHPAAHGVLRLILEL+GEIV++ DPHIGLLHRGTEKLIE K +LQ
Sbjct: 1 MALKKIKNFSINFGPQHPAAHGVLRLILELNGEIVKKADPHIGLLHRGTEKLIEYKNYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+ M QEHAY LAVEKLL +IP+R Q IRVL+SEI RIL+H+L V A
Sbjct: 61 ALPYFDRLDYVSMMCQEHAYVLAVEKLLNCDIPLRAQYIRVLFSEITRILNHILAVVCHA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+DVGA+TP WGFEEREKL+ FYER SG+RMH++YFRPGGVHQD+P L+ DI +C+ F
Sbjct: 121 LDVGAMTPLFWGFEEREKLLEFYERVSGARMHSSYFRPGGVHQDLPKGLLNDIYIFCNQF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ L++I +LLT NRI+KQR V+IG + +DA WGFSGVM+RGSG +WDLRK+QPYE Y
Sbjct: 181 NTRLDEIEELLTDNRIWKQRLVDIGVISAKDALDWGFSGVMLRGSGISWDLRKTQPYEVY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+LDFDIPIG +GDCYDRYL+R+ EMR+SV+II Q +N + G + D KI P
Sbjct: 241 DKLDFDIPIGTNGDCYDRYLIRIEEMRQSVRIILQVLNEI----PEGLIKLDDKKITNPN 296
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R MK SMESLIHHFK Y+E V GE Y +EAPKGE+GV+L+SDG NKPYRCKIR+P
Sbjct: 297 RVQMKNSMESLIHHFKYYSENITVNSGETYTVIEAPKGEYGVFLVSDGTNKPYRCKIRSP 356
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHLQA++F+ K H +ADV I+G+ DIVFGE+DR
Sbjct: 357 GFAHLQALDFMAKNHMIADVVTIIGTQDIVFGEIDR 392
>gi|300311098|ref|YP_003775190.1| NADH dehydrogenase I subunit D [Herbaspirillum seropedicae SmR1]
gi|300073883|gb|ADJ63282.1| NADH dehydrogenase I (Chain D) oxidoreductase protein
[Herbaspirillum seropedicae SmR1]
Length = 417
Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats.
Identities = 245/418 (58%), Positives = 308/418 (73%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHRGTEKL E KTFLQ+VP
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAEQKTFLQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M+ EH Y LA+E++LGI++P+R Q IRV++ EI R+L+HL+ + A+DV
Sbjct: 62 YMDRLDYVSMMSNEHGYVLAIERMLGIDVPLRAQYIRVMFDEITRLLNHLMWIGAHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE L YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMGVLLYAFREREDLFDCYEAVSGARMHAAYYRPGGVYRDLPDSMPQYKASIVRNEKAI 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + + FP+ +++ LLT NRI+KQR V +G V E A GFS
Sbjct: 182 RELNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGVGVVSPERALQMGFS 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG AWDLRK QPYE Y LDFDIP+GK+GDCYDRYLVR+ EMR+S +II+QCV
Sbjct: 242 GPMLRGSGIAWDLRKKQPYEVYDLLDFDIPVGKNGDCYDRYLVRVAEMRQSNRIIKQCVE 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L +N GPV + KI PPKRADMK +ME LIHHFKL+TEG+ VP GE YAAVE PKG
Sbjct: 302 WL--RNNPGPVITDNHKIAPPKRADMKSNMEDLIHHFKLFTEGFRVPAGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFGVYL+SDG NKPYR KIRAPG+AHLQA+ + KGH +AD I+G+ DIVFGE+DR
Sbjct: 360 EFGVYLVSDGANKPYRLKIRAPGFAHLQALNEMAKGHMIADAVTIIGTQDIVFGEIDR 417
>gi|126461945|ref|YP_001043059.1| NADH dehydrogenase subunit D [Rhodobacter sphaeroides ATCC 17029]
gi|218534434|sp|A3PIX1|NUOD_RHOS1 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|126103609|gb|ABN76287.1| NADH dehydrogenase I, D subunit [Rhodobacter sphaeroides ATCC
17029]
Length = 402
Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats.
Identities = 283/394 (71%), Positives = 338/394 (85%), Gaps = 3/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++K R+F INFGPQHPAAHGVLRL+LELDGE+VER DPHIGLLHRGTEKL+E++T+LQ +
Sbjct: 12 EQKLRNFNINFGPQHPAAHGVLRLVLELDGEVVERCDPHIGLLHRGTEKLMESRTYLQNL 71
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYVAPMNQEHA+ LA+E+L G+ +P R LIRVLYSEIGR+L+HLLNVTTQAMD
Sbjct: 72 PYFDRLDYVAPMNQEHAWCLAIERLTGVAVPRRASLIRVLYSEIGRVLNHLLNVTTQAMD 131
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTPPLWGFEEREKLMVFYERASG+R+HAAYFRPGGVHQD+ P L+EDI W + FP
Sbjct: 132 VGALTPPLWGFEEREKLMVFYERASGARLHAAYFRPGGVHQDLTPRLIEDIEEWAEHFPK 191
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+D+ +LLT NRIFKQRNV+IG + +D WGFSGVM+RGSG AWDLR+SQPYECY E
Sbjct: 192 VLDDLDELLTENRIFKQRNVDIGIISEKDILDWGFSGVMVRGSGFAWDLRRSQPYECYDE 251
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF IP+GK+GDCYDRYL RM EMR+S +II+QC+ +L + + K+ PP R
Sbjct: 252 FDFQIPVGKNGDCYDRYLCRMEEMRQSTRIIQQCLAKLRVEKGDV---LARGKLTPPPRG 308
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SME+LIHHFKLYTEG+HVP GEVYAAVEAPKGEFGVYL++DG N+PYR KIRAPG+
Sbjct: 309 EMKTSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKGEFGVYLVADGTNRPYRAKIRAPGF 368
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQA++++ KGH LADVSAI+G+LD+VFGE+DR
Sbjct: 369 LHLQAIDYIAKGHLLADVSAIIGTLDVVFGEIDR 402
>gi|269812160|gb|ACZ44458.1| NADH dehydrogenase subunit 7 [Pythium ultimum]
Length = 392
Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats.
Identities = 259/396 (65%), Positives = 317/396 (80%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M KK ++F+INFGPQHPAAHGVLRLILEL+GEIV++ DPHIGLLHRGTEKLIE K +LQ
Sbjct: 1 MALKKIKNFSINFGPQHPAAHGVLRLILELNGEIVKKADPHIGLLHRGTEKLIEYKNYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+ M QEHAY LAVEKLL +IP+R Q IRVL+SEI RIL+H+L V A
Sbjct: 61 ALPYFDRLDYVSMMCQEHAYVLAVEKLLNCDIPLRAQYIRVLFSEITRILNHILAVVCHA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+DVGA+TP WGFEEREKL+ FYER SG+RMH++YFRPGGVHQD+P L+ DI +C+ F
Sbjct: 121 LDVGAMTPLFWGFEEREKLLEFYERVSGARMHSSYFRPGGVHQDLPKGLLNDIYIFCNQF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ L++I +LLT NRI+KQR V+IG + +DA WGFSGVM+RGSG +WDLRK+QPYE Y
Sbjct: 181 NTRLDEIEELLTDNRIWKQRLVDIGVISAKDALDWGFSGVMLRGSGISWDLRKTQPYEVY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+LDFDIPIG +GDCYDRYL+R+ EMR+SV+II Q +N + G + D KI P
Sbjct: 241 DKLDFDIPIGTNGDCYDRYLIRIEEMRQSVRIILQVLNEI----PEGLIKLDDKKITNPN 296
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R MK SMESLIHHFK Y+E V GE Y +EAPKGE+GV+L+SDG NKPYRCKIR+P
Sbjct: 297 RIQMKNSMESLIHHFKYYSENITVNSGETYTVIEAPKGEYGVFLVSDGTNKPYRCKIRSP 356
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHLQA++F+ K H +ADV I+G+ DIVFGE+DR
Sbjct: 357 GFAHLQALDFMAKNHMIADVVTIIGTQDIVFGEIDR 392
>gi|226467736|emb|CAX69744.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2 [Schistosoma
japonicum]
Length = 460
Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats.
Identities = 242/392 (61%), Positives = 307/392 (78%), Gaps = 4/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ +S +NFGPQHPAAHGVLRLI+ELDGE + R+DPHIGLLHRGTEKLIE KT+ QA+PY
Sbjct: 73 EVQSVHLNFGPQHPAAHGVLRLIMELDGESIIRLDPHIGLLHRGTEKLIEYKTYTQALPY 132
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
FDRLDY + M E YALAVEKLL IE+P R + IR L++EI RI++H L V + +D+G
Sbjct: 133 FDRLDYASMMCNEQCYALAVEKLLNIEVPPRAKYIRTLFAEITRIMNHCLAVGSTILDIG 192
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
+TP W FEEREK+ FYER SG+RMHAAY RPGGV+ D+P L++DI + FP L
Sbjct: 193 VITPIFWLFEEREKMFEFYERVSGARMHAAYIRPGGVYLDMPLGLMDDIYRFIQKFPQRL 252
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
++ISDLL N I+ R ++G V EDA GFSGVM+RGSG WDLRK+QPY+ Y+++D
Sbjct: 253 DEISDLLLDNPIWITRTKDVGVVSAEDALDLGFSGVMLRGSGIKWDLRKTQPYDAYADMD 312
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FD+PIG HGDCYDR+++RM EMR+S++II QC+N++ G + D KI PPKRA+M
Sbjct: 313 FDVPIGVHGDCYDRFMIRMEEMRQSLRIIEQCLNKM----PKGEIRVDDAKICPPKRAEM 368
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K SME+LIHHFKL++EGY VP G Y A+EAPKGEFGVYL+SDG NKPYRCKI+APG++H
Sbjct: 369 KHSMEALIHHFKLFSEGYLVPPGSTYTAIEAPKGEFGVYLVSDGTNKPYRCKIKAPGFSH 428
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
L A++ +C+G +ADV A++G+LDIVFGEVDR
Sbjct: 429 LAAIDKMCRGFLIADVVAVIGTLDIVFGEVDR 460
>gi|302854328|ref|XP_002958673.1| NADH:ubiquinone oxidoreductase 49 kDa subunit [Volvox carteri f.
nagariensis]
gi|300255998|gb|EFJ40276.1| NADH:ubiquinone oxidoreductase 49 kDa subunit [Volvox carteri f.
nagariensis]
Length = 469
Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats.
Identities = 256/393 (65%), Positives = 314/393 (79%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K +FT+NFGPQHPAAHGVLRL+LE++GEI+ R DPHIGLLHRGTEKLIE KT+LQA+P
Sbjct: 81 AKVNNFTLNFGPQHPAAHGVLRLVLEMNGEIITRADPHIGLLHRGTEKLIEYKTYLQALP 140
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M EH+Y LA+E+LL + +P+RGQ IRVLYSEI R+L+HLL +T AMDV
Sbjct: 141 YFDRLDYVSMMCMEHSYVLAIEQLLNLAVPLRGQYIRVLYSEITRVLNHLLAITCHAMDV 200
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP LW FEEREKL FYER SG+RMHAAYFR GGV QD+P L+ DI W F S
Sbjct: 201 GALTPFLWAFEEREKLFEFYERVSGARMHAAYFRVGGVSQDLPIGLLRDIYDWARQFSSR 260
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L++I +LLTGNRI+K+R V++GT+ + AW WG SG ++R SG WDLRK+QPY+ Y +
Sbjct: 261 LDEIEELLTGNRIWKERTVDVGTITAQMAWDWGCSGPILRASGIDWDLRKTQPYDAYGRM 320
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
F++PI HGDCYDRYLVR+ EMRES++II QC+N + G + D K+ PP R+
Sbjct: 321 QFNVPIAGHGDCYDRYLVRLQEMRESLRIIYQCLNEMPD----GLYKSPDAKVCPPSRST 376
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK+SME+LIHHFKLYTEG+HVP GE Y AVEAPKGEFGVYL+S GGN+PYRCKIR+PGYA
Sbjct: 377 MKQSMEALIHHFKLYTEGFHVPAGETYRAVEAPKGEFGVYLVSRGGNRPYRCKIRSPGYA 436
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ M+ + KG LADV I+G++D+VFGE+DR
Sbjct: 437 HLQMMDVISKGAMLADVVTIIGTMDVVFGEIDR 469
>gi|197941024|gb|ACH78248.1| NADH dehydrogenase subunit 7 [Arabidopsis thaliana]
Length = 394
Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats.
Identities = 254/394 (64%), Positives = 317/394 (80%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K++ ++FT+NFGPQHPAAHGVLRL+LE++GE+VER +PHIGLLHRGTEKLIE KT+LQA+
Sbjct: 5 KRQIKNFTLNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQAL 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M QEHAY+LAVEKLL E+P+R Q IRVL+ EI RIL+HLL +TT AMD
Sbjct: 65 PYFDRLDYVSMMAQEHAYSLAVEKLLNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTP LW FEEREKL+ FYER SG+RMHA++ RPGGV QD+P L DI + F S
Sbjct: 125 VGALTPFLWAFEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCRDIDSFTQQFAS 184
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++++ ++LTGNRI+KQR V+IGTV + A WGFSGVM+RG G WDLR++ PY+ Y +
Sbjct: 185 RIDELEEMLTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGPGVCWDLRRAAPYDVYDQ 244
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LDFD+P+G GDCYDRY +R+ EMR+S++II QC+N++ G + A D K+ PP R
Sbjct: 245 LDFDVPVGTRGDCYDRYCIRIEEMRQSLRIIVQCLNQM----PSGMIKADDRKLCPPSRC 300
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
MK SMESLIHHF+LYTEG+ VP Y AVEAPKGEFGV+L+S+G N+PYRCKIRAPG+
Sbjct: 301 RMKLSMESLIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGF 360
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ ++F+ K H LADV I+G+ DIVFGEVDR
Sbjct: 361 AHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 394
>gi|225719850|gb|ACO15771.1| NADH dehydrogenase iron-sulfur protein 2, mitochondrial precursor
[Caligus clemensi]
Length = 477
Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats.
Identities = 245/394 (62%), Positives = 309/394 (78%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+K ++ +NFGPQHPAAHGVLRL+L+LDGE+V DPHIGLLHRGTEKLIE KT+ QA+
Sbjct: 88 EKNVKNVQVNFGPQHPAAHGVLRLVLQLDGELVREADPHIGLLHRGTEKLIEYKTYTQAL 147
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E AY+LAVEKLL I++P+R + IRVL+ E+ RIL+HL+ + T +D
Sbjct: 148 PYFDRLDYVSMMCNEQAYSLAVEKLLNIDVPLRAKYIRVLFGELTRILNHLMGIGTHILD 207
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+G +TP W FEEREK+M FYERASG+RMHAAY RPGGVH+DIP L++DI + FP
Sbjct: 208 LGGITPFFWLFEEREKMMEFYERASGARMHAAYVRPGGVHRDIPIGLLDDIYEFISKFPQ 267
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++++ DL+T NRIF R +IG + EDA +GFSGVM+RGSG WDLRKSQPY+ Y
Sbjct: 268 RMDEVEDLVTTNRIFISRTEDIGVISSEDALNYGFSGVMLRGSGIKWDLRKSQPYDAYDL 327
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+DFD+P+G+ GDCYDRYL+RM EMR+SV+II QC+N + G V D K +PP RA
Sbjct: 328 VDFDVPVGRKGDCYDRYLIRMEEMRQSVRIIHQCLNDM----PEGEVRTDDAKCIPPSRA 383
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SME+LIHHFKL+T+GY VP G Y A+EAPKGEFGVYL+ DG ++PYRCKI+APG+
Sbjct: 384 EMKSSMEALIHHFKLFTQGYTVPAGATYTAIEAPKGEFGVYLVFDGSSRPYRCKIKAPGF 443
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL AM+ + K LADV AI+G+LD+VFGEVDR
Sbjct: 444 AHLAAMDHMSKNGYLADVVAIIGTLDVVFGEVDR 477
>gi|116180928|ref|XP_001220313.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor [Chaetomium globosum CBS 148.51]
gi|88185389|gb|EAQ92857.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor [Chaetomium globosum CBS 148.51]
Length = 485
Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats.
Identities = 238/396 (60%), Positives = 303/396 (76%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
++ +K R +T+NFGPQHPAAHGVLRLILEL+GE + R DPH+GLLHRGTEKL E KT+LQ
Sbjct: 94 VEDRKVRHYTVNFGPQHPAAHGVLRLILELNGEEIIRSDPHVGLLHRGTEKLCEYKTYLQ 153
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+ M E ++LAVEKLL IEIP R + IR L+ E+ R+L+HL+ V T A
Sbjct: 154 ALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPDRAKFIRTLFGELTRVLNHLMAVLTHA 213
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTP LWGFEEREKLM FYER SG+R+HAAY RPGGVHQDIP L++DI W F
Sbjct: 214 MDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPVGLLDDIYQWATQF 273
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+++ ++LT NRI+ R +G V DA F+GVM+RGSG WD+RKSQPY+ Y
Sbjct: 274 GDRIDETEEMLTDNRIWINRLQGVGVVSAADALNLSFTGVMLRGSGVPWDIRKSQPYDAY 333
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+++FD+P+G +GDCYDRYL RM E R+S++II QC+N++ GPV D KI PP
Sbjct: 334 DQVEFDVPVGTNGDCYDRYLCRMEEFRQSLRIIIQCLNKMPA----GPVRVEDYKISPPP 389
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R+ MK +ME+LIHHF LYT+GY VP G+ Y+A+EAPKGE GVY++SDG +PYR IRAP
Sbjct: 390 RSAMKENMEALIHHFLLYTKGYAVPPGDTYSAIEAPKGEMGVYVVSDGSERPYRVSIRAP 449
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHL + + +GH LAD A++G++D+VFGEVDR
Sbjct: 450 GFAHLSGFDHVSRGHLLADAVAVIGTMDLVFGEVDR 485
>gi|254476027|ref|ZP_05089413.1| NADH dehydrogenase (quinone), D subunit [Ruegeria sp. R11]
gi|214030270|gb|EEB71105.1| NADH dehydrogenase (quinone), D subunit [Ruegeria sp. R11]
Length = 403
Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats.
Identities = 290/394 (73%), Positives = 339/394 (86%), Gaps = 3/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++K R+F INFGPQHPAAHGVLRL+LELDGEIVER DPHIGLLHRGTEKL+E++T+LQ +
Sbjct: 13 EQKIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNL 72
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYVAPMNQEHA+ LA+EKL G+E+P R LIRVLYSEIGRIL+HLLNVTTQAMD
Sbjct: 73 PYFDRLDYVAPMNQEHAWCLAIEKLTGVEVPRRASLIRVLYSEIGRILNHLLNVTTQAMD 132
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTPPLWGFEEREKLM+FYERA G+R+HAAYFRPGGVHQD+P L++DI W +FP+
Sbjct: 133 VGALTPPLWGFEEREKLMIFYERACGARLHAAYFRPGGVHQDLPDALIDDIEAWTYTFPA 192
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++DI LLT NRIFKQRN +IG V ED +GFSGVM+RGSG AWDLR+SQPYECY E
Sbjct: 193 VMDDIDGLLTENRIFKQRNADIGVVTEEDILNYGFSGVMVRGSGLAWDLRRSQPYECYDE 252
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF IP+GK+GDCYDRYLVRM EMR+S+ IIRQC+ +L + K+ PPKR
Sbjct: 253 FDFQIPVGKNGDCYDRYLVRMEEMRQSLSIIRQCIGKLRETPGDV---LARGKLTPPKRG 309
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
DMK SMESLIHHFKLYTEG+HVP GEVYAAVEAPKGEFGVYL++DG NKPYR K+RAPGY
Sbjct: 310 DMKTSMESLIHHFKLYTEGFHVPAGEVYAAVEAPKGEFGVYLVADGTNKPYRAKLRAPGY 369
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQAM+++ KGHQLADV+AI+G++D+VFGE+DR
Sbjct: 370 LHLQAMDYVAKGHQLADVAAIIGTMDVVFGEIDR 403
>gi|296040741|gb|ADG85338.1| NADH dehydrogenase subunit 7 [Silene noctiflora]
Length = 394
Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats.
Identities = 252/394 (63%), Positives = 316/394 (80%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
KK+ ++FT+NFGPQHPAAHGVLRL+LE++GE+VER +PHIGLLHRGTEKLIE KT+LQA+
Sbjct: 5 KKEIKTFTLNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQAL 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M QEHAY+LAVE LL E+P+R Q IRVL+ EI R+L+HLL +TT AMD
Sbjct: 65 PYFDRLDYVSMMAQEHAYSLAVESLLNCEVPLRAQYIRVLFCEITRLLNHLLALTTHAMD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTP LW FEEREKL+ FYER SG+RMHA++ RPGGV QD+P L DI + F S
Sbjct: 125 VGALTPFLWAFEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCRDIDSFTQQFSS 184
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++++ ++LT NRI+K R V+IGTV E A WGFSGVM+RGSG WDLR++ PY+ Y +
Sbjct: 185 RIDELEEMLTANRIWKDRLVDIGTVTAEQAKSWGFSGVMLRGSGVCWDLRRAAPYDVYHQ 244
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LDFD+P+G GDCYDRY +R+ EMR+S+++I QC+N L +G + + D K+ PP R+
Sbjct: 245 LDFDVPVGTRGDCYDRYCIRIEEMRQSLRLIVQCLNEL----PLGLIKSDDRKLCPPSRS 300
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
MK SMESLIHHF+LYTEG+ VP VY VEAPKGEFGV+L+S+G N+PYRCKIRAPG+
Sbjct: 301 RMKLSMESLIHHFELYTEGFSVPSSSVYTGVEAPKGEFGVFLVSNGSNRPYRCKIRAPGF 360
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ ++F+ K H LADV I+G+ DIVFGEVDR
Sbjct: 361 AHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 394
>gi|77463073|ref|YP_352577.1| NADH dehydrogenase subunit D [Rhodobacter sphaeroides 2.4.1]
gi|221638929|ref|YP_002525191.1| NADH dehydrogenase subunit D [Rhodobacter sphaeroides KD131]
gi|123592235|sp|Q3J3F8|NUOD_RHOS4 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|77387491|gb|ABA78676.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain D [Rhodobacter
sphaeroides 2.4.1]
gi|221159710|gb|ACM00690.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain D [Rhodobacter
sphaeroides KD131]
Length = 404
Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats.
Identities = 283/394 (71%), Positives = 338/394 (85%), Gaps = 3/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++K R+F INFGPQHPAAHGVLRL+LELDGE+VER DPHIGLLHRGTEKL+E++T+LQ +
Sbjct: 14 EQKLRNFNINFGPQHPAAHGVLRLVLELDGEVVERCDPHIGLLHRGTEKLMESRTYLQNL 73
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYVAPMNQEHA+ LA+E+L G+ +P R LIRVLYSEIGR+L+HLLNVTTQAMD
Sbjct: 74 PYFDRLDYVAPMNQEHAWCLAIERLTGVAVPRRASLIRVLYSEIGRVLNHLLNVTTQAMD 133
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTPPLWGFEEREKLMVFYERASG+R+HAAYFRPGGVHQD+ P L+EDI W + FP
Sbjct: 134 VGALTPPLWGFEEREKLMVFYERASGARLHAAYFRPGGVHQDLTPRLIEDIEEWAEHFPK 193
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+D+ +LLT NRIFKQRNV+IG + +D WGFSGVM+RGSG AWDLR+SQPYECY E
Sbjct: 194 VLDDLDELLTENRIFKQRNVDIGIISEKDILDWGFSGVMVRGSGFAWDLRRSQPYECYDE 253
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF IP+GK+GDCYDRYL RM EMR+S +II+QC+ +L + + K+ PP R
Sbjct: 254 FDFQIPVGKNGDCYDRYLCRMEEMRQSTRIIQQCLAKLRVEKGDV---LARGKLTPPPRG 310
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SME+LIHHFKLYTEG+HVP GEVYAAVEAPKGEFGVYL++DG N+PYR KIRAPG+
Sbjct: 311 EMKTSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKGEFGVYLVADGTNRPYRAKIRAPGF 370
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQA++++ KGH LADVSAI+G+LD+VFGE+DR
Sbjct: 371 LHLQAIDYIAKGHLLADVSAIIGTLDVVFGEIDR 404
>gi|295311695|ref|YP_003587352.1| NADH dehydrogenase subunit 7 [Cucurbita pepo]
gi|259156823|gb|ACV96684.1| NADH dehydrogenase subunit 7 [Cucurbita pepo]
Length = 394
Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats.
Identities = 254/394 (64%), Positives = 317/394 (80%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K++ +FT+NFGPQHPAAHGVLRL+LE++GE+VER +PHIGLLHRGTEKLIE KT+LQA+
Sbjct: 5 KRQITNFTLNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQAL 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M QEHAY+LAVE+LL E+P+R Q IRVL+ EI RIL+HLL +TT AMD
Sbjct: 65 PYFDRLDYVSMMAQEHAYSLAVERLLNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTP LW FEEREKL+ FYER SG+RMHA++ RPGGV QD+P L DI + F S
Sbjct: 125 VGALTPFLWAFEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCRDIDSFTQQFAS 184
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++++ ++LTGNRI+KQR V+IGTV + A WGFSGVM+RGSG WDLR++ PY+ Y +
Sbjct: 185 RIDELEEMLTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGSGVCWDLRRAAPYDVYDQ 244
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LDFD+P+G GDCYDRY +R+ EMR+SV+II QC+N++ G + A D K+ PP R+
Sbjct: 245 LDFDVPVGTRGDCYDRYCIRIEEMRQSVRIIVQCLNQM----PSGMIKADDRKLCPPSRS 300
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
MK SMESLIHHF+LYTEG+ VP Y AVEAPKGEFGV+L+S+G N+PYRCKIRAPG+
Sbjct: 301 RMKLSMESLIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGF 360
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ ++F+ K H LADV I+G+ DIV GEVDR
Sbjct: 361 AHLQGLDFMAKHHMLADVVTIIGTQDIVSGEVDR 394
>gi|67458956|ref|YP_246580.1| NADH dehydrogenase subunit D [Rickettsia felis URRWXCal2]
gi|75536606|sp|Q4UM08|NUOD_RICFE RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|67004489|gb|AAY61415.1| NADH dehydrogenase I chain D [Rickettsia felis URRWXCal2]
Length = 391
Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats.
Identities = 258/394 (65%), Positives = 314/394 (79%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ T+N GPQHPA HGVLRLILE+DGE+V DPHIGLLHRGTEKLIE KT+LQA+
Sbjct: 2 TNNTKTITLNLGPQHPATHGVLRLILEMDGEVVNNADPHIGLLHRGTEKLIEHKTYLQAI 61
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+PM QEHA+ALAVE LL E+P R Q IRVL+SE+ RIL+H LN+ +QA+D
Sbjct: 62 PYFDRLDYVSPMCQEHAFALAVESLLECEVPRRAQFIRVLFSELTRILNHTLNIGSQALD 121
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA TP LW FEEREK+M FYER SGSRMH+ YFRPGGV +D+P L+EDI + + FP
Sbjct: 122 IGATTPLLWLFEEREKIMEFYERVSGSRMHSNYFRPGGVAEDLPDGLLEDIDKFIEQFPP 181
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+DI LL NR++KQR V+IG V ++A WGFSG M+RGSG AWDLRKS PY+ Y E
Sbjct: 182 KLHDIESLLNENRLWKQRLVDIGVVSQKEAMDWGFSGPMLRGSGIAWDLRKSNPYDVYDE 241
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+DF +PIGK+GDCYDRY VRM+EM ES+KII+QC+ ++ G V DPK+ PP RA
Sbjct: 242 IDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQCIEKM----PKGAVKTDDPKLTPPTRA 297
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
MK SME++IHHFKLYTEGY VP GE Y AVEAPKGEFGVYL S GGN+PYRC+I+APG+
Sbjct: 298 KMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGEFGVYLYSQGGNRPYRCRIKAPGF 357
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ ++F+ KGH +ADV I+ +LDIVFGE+DR
Sbjct: 358 AHLQGLDFISKGHLMADVITIIATLDIVFGEIDR 391
>gi|89067786|ref|ZP_01155240.1| NADH dehydrogenase delta subunit [Oceanicola granulosus HTCC2516]
gi|89046756|gb|EAR52811.1| NADH dehydrogenase delta subunit [Oceanicola granulosus HTCC2516]
Length = 404
Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats.
Identities = 291/394 (73%), Positives = 336/394 (85%), Gaps = 3/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++K R+F INFGPQHPAAHGVLRL+LELDGEIVER DPHIGLLHRGTEKL+ET+T+LQ +
Sbjct: 14 EQKIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMETRTYLQNL 73
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYVAPMNQEHA+ LA+EKL G E+P R QLIRVLYSEIGR+L+HLLNVTTQAMD
Sbjct: 74 PYFDRLDYVAPMNQEHAWCLAIEKLTGTEVPRRAQLIRVLYSEIGRVLNHLLNVTTQAMD 133
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTPPLWGFEEREKLM+FYERA G+R+HAAYFRPGGVHQD+P ELVEDI W +FP
Sbjct: 134 VGALTPPLWGFEEREKLMIFYERACGARLHAAYFRPGGVHQDLPDELVEDIDAWAKTFPE 193
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+DI LLT NRIFKQRNV+IG V ++ WGFSGVM+RGSG AWDLR++QPYECY E
Sbjct: 194 VLDDIDGLLTENRIFKQRNVDIGIVNEQEILDWGFSGVMVRGSGLAWDLRRAQPYECYDE 253
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+F +P+GK+GDC+DRYLVRM EMR+S IIRQ +L + + K+ PP RA
Sbjct: 254 FEFQVPVGKNGDCFDRYLVRMEEMRQSTHIIRQACEKLRRERGDV---LARGKVTPPSRA 310
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
DMK SMESLIHHFKLYTEG+HVP GEVY AVEAPKGEFGVYL++DG N+PYR K+RAPG+
Sbjct: 311 DMKTSMESLIHHFKLYTEGFHVPEGEVYCAVEAPKGEFGVYLVADGTNRPYRAKLRAPGF 370
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQAM+ + KGHQLADVSAI+G+LDIVFGEVDR
Sbjct: 371 LHLQAMDHISKGHQLADVSAIIGTLDIVFGEVDR 404
>gi|295311652|ref|YP_003587260.1| NADH dehydrogenase subunit 7 [Citrullus lanatus]
gi|259156780|gb|ACV96642.1| NADH dehydrogenase subunit 7 [Citrullus lanatus]
Length = 394
Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats.
Identities = 253/393 (64%), Positives = 317/393 (80%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
++ ++FT+NFGPQHPAAHGVLRL+LE++GE+VER +PHIGLLHRGTEKLIE KT+LQA+P
Sbjct: 6 RQIKNFTLNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQALP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M QEHAY+LAVE+LL E+P+R Q IRVL+ EI RIL+HLL +TT AMDV
Sbjct: 66 YFDRLDYVSMMAQEHAYSLAVERLLNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMDV 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP LW FEEREKL+ FYER SG+RMHA++ RPGGV QD+P L DI + F S
Sbjct: 126 GALTPFLWAFEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCRDIDSFTQQFASR 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
++++ ++LTGNRI+KQR V+IGTV + A WGFSGVM+RGSG WDLR++ PY+ Y +L
Sbjct: 186 IDELEEMLTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGSGVCWDLRRAAPYDVYDQL 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DFD+P+G GDCYDRY +R+ EMR+SV+II QC+N++ G + A D K+ PP R+
Sbjct: 246 DFDVPVGTRGDCYDRYCIRIEEMRQSVRIIVQCLNQM----PSGMIKADDRKLCPPSRSR 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK SMESLIHHF+LYTEG+ VP Y AVEAPKGEFGV+L+S+G N+PYRCKIRAPG+A
Sbjct: 302 MKLSMESLIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFA 361
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ ++F+ K H LADV I+G+ DIV GEVDR
Sbjct: 362 HLQGLDFMSKHHMLADVVTIIGTQDIVSGEVDR 394
>gi|149759791|ref|XP_001503853.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein
2, 49kDa (NADH-coenzyme Q reductase) isoform 1 [Equus
caballus]
Length = 463
Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats.
Identities = 249/389 (64%), Positives = 311/389 (79%), Gaps = 4/389 (1%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
+ T+NFGPQHPAAHGVLRL++EL GE+V + DPHIGLLHRGTEKLIE KT+LQA+PYFDR
Sbjct: 79 NLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDR 138
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
LDYV+ M E AY+LAVEKLL I+ P R Q IRVL+ EI R+L+H++ VTT A+D+GA+T
Sbjct: 139 LDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRLLNHIMAVTTHALDIGAMT 198
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
P W FEEREK+ FYER SG+RMHAAY RPGGVHQD+P L++DI + +F ++++
Sbjct: 199 PFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYEFSKNFSLRIDEL 258
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
++LT NRI++ R V+IG V EDA +GFSGVM+RGSG WDLRK+QPY+ Y +++FD+
Sbjct: 259 EEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDV 318
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
PIG GDCYDRYL R+ EMR+SV+II QC+NR+ G + D K+ PPKRA+MK S
Sbjct: 319 PIGSRGDCYDRYLCRVEEMRQSVRIISQCLNRM----PPGEIKVDDAKVSPPKRAEMKTS 374
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
MESLIHHFKLYTEGY VP G Y A+EAPKGEFGVYL+SDG ++PYRCKI+APG+AHL
Sbjct: 375 MESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAG 434
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 435 LDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
>gi|39958762|ref|XP_364440.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor [Magnaporthe oryzae 70-15]
gi|145013257|gb|EDJ97898.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor [Magnaporthe oryzae 70-15]
Length = 488
Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats.
Identities = 238/396 (60%), Positives = 303/396 (76%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ ++K R +T+NFGPQHPAAHGVLRLILEL GE + R DPH+GLLHRGTEKL E KT+LQ
Sbjct: 97 VAERKIRHYTVNFGPQHPAAHGVLRLILELSGEEIVRADPHVGLLHRGTEKLCEYKTYLQ 156
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+ M E +ALAVEKLL IEIP R + IR ++ EI R+L+HL++V + A
Sbjct: 157 ALPYFDRLDYVSMMTNEQCFALAVEKLLNIEIPERAKYIRTMFGEITRVLNHLMSVLSHA 216
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTP LWGFEEREKLM FYER SG+R+HAAY RPGGVHQDIP L++DI W F
Sbjct: 217 MDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPAGLLDDIYQWATQF 276
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+++ ++LT NRI+ R +G V ++A F+GVM+RGSG WD+RKS PY+ Y
Sbjct: 277 GDRIDETEEMLTDNRIWINRLQGVGVVSAKEALDLSFTGVMLRGSGVPWDIRKSSPYDAY 336
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+++FDIP+G +GDCYDRYL RM E R+S++II QC+N++ GPV D K+ PP
Sbjct: 337 DKVEFDIPVGLNGDCYDRYLCRMEEFRQSLRIIHQCLNQMPA----GPVRVEDYKVSPPP 392
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
RA MK +ME+LIHHF LYT+GY VP G+ Y+ +EAPKGE GVY++SDG +PYR IRAP
Sbjct: 393 RAAMKENMEALIHHFLLYTKGYAVPPGDTYSVIEAPKGEMGVYVVSDGSERPYRVHIRAP 452
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHL + +CKGH LAD A++G++D+VFGEVDR
Sbjct: 453 GFAHLAGFDHVCKGHLLADAVAVIGTMDLVFGEVDR 488
>gi|161723847|ref|NP_360119.2| NADH dehydrogenase subunit D [Rickettsia conorii str. Malish 7]
gi|147705285|sp|Q92ID8|NUOD_RICCN RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
Length = 391
Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats.
Identities = 255/394 (64%), Positives = 311/394 (78%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ T+N GPQHPA HGVLRLILE+DGE+V DPHIGLLHRGTEKLIE KT+LQA+
Sbjct: 2 TNNTKTITLNIGPQHPATHGVLRLILEMDGEVVNNADPHIGLLHRGTEKLIEHKTYLQAI 61
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+PM QEHA+ALAVE LL E+P R Q IRVL+SE+ RIL+H LN+ +QA+D
Sbjct: 62 PYFDRLDYVSPMCQEHAFALAVESLLECEVPRRAQFIRVLFSELTRILNHTLNIGSQALD 121
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA TP LW FEEREK+M FYE SGSRMH+ YFRPGGV D+P L+EDI + + FP
Sbjct: 122 IGATTPLLWLFEEREKIMEFYEHVSGSRMHSNYFRPGGVAADLPEGLLEDIDKFIEQFPP 181
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+DI LL NR++KQR V+IG ++A WGFSG M+RGSG AWDLRKS PY+ Y E
Sbjct: 182 KLHDIESLLNENRLWKQRLVDIGVASQKEAMDWGFSGPMLRGSGIAWDLRKSNPYDVYDE 241
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+DF +PIGK+GDCYDRY VRM+EM ES+KII+QC+ ++ G + DPK+ PP RA
Sbjct: 242 MDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQCIEKM----PKGAIKTDDPKLTPPTRA 297
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
MK SME++IHHFKLYTEGY VP GE Y AVEAPKGEFGVYL S GGN+PYRC+I+APG+
Sbjct: 298 KMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGEFGVYLYSQGGNRPYRCRIKAPGF 357
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ ++F+ KGH +ADV I+ +LDIVFGE+DR
Sbjct: 358 AHLQGLDFMSKGHLMADVITIIATLDIVFGEIDR 391
>gi|320582439|gb|EFW96656.1| NADH-ubiquinone oxidoreductase subunit, mitochondrial precursor
[Pichia angusta DL-1]
Length = 499
Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats.
Identities = 245/394 (62%), Positives = 307/394 (77%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K K R FT+NFGPQHPAAHGVLRLILEL GE + R DPH+GLLHRGTEKLIE+KT++QA+
Sbjct: 110 KNKIRHFTLNFGPQHPAAHGVLRLILELHGEEIVRSDPHVGLLHRGTEKLIESKTYIQAL 169
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E ++LAVEKLL IE+PIR + IR ++ EI RIL+HL++V + AMD
Sbjct: 170 PYFDRLDYVSMMTNEQVFSLAVEKLLNIEVPIRAKYIRTMFGEITRILNHLMSVLSHAMD 229
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTP LWGFEEREKLM FYER SG+R+HAAY RPGGV QD+P L++DI W F
Sbjct: 230 VGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDLPFGLLDDIYMWATQFGD 289
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+++ +LLT NRI+KQR V+IGTV EDA +G SGVM+RGSG +D+RKSQPY+ Y
Sbjct: 290 RIDETEELLTDNRIWKQRTVDIGTVTAEDALNYGLSGVMLRGSGVPFDIRKSQPYDAYEY 349
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+DFD+P+G GDCYDRYL+RM E R+S++II QC+N + GPV D KI PP ++
Sbjct: 350 VDFDVPVGTRGDCYDRYLIRMAEFRQSLRIIEQCINDMPA----GPVKVEDFKIAPPAKS 405
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
MK ME+LIHHF ++T+GY VP GE Y +EAPKGE GVY++SDG +PYRCKIRAPG+
Sbjct: 406 LMKTDMEALIHHFLVFTKGYQVPPGETYTVIEAPKGEMGVYVVSDGSERPYRCKIRAPGF 465
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+HL A + + +GH L D AI+G++D+VFGEVDR
Sbjct: 466 SHLAAFDHISRGHLLPDAVAIIGTMDLVFGEVDR 499
>gi|320592151|gb|EFX04590.1| NADH-ubiquinone oxidoreductase [Grosmannia clavigera kw1407]
Length = 497
Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats.
Identities = 236/396 (59%), Positives = 303/396 (76%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
++ +K R +T+NFGPQHPAAHGVLRLILE++GE + R DPH+GLLHRGTEKL E KT+LQ
Sbjct: 106 VEGRKIRHYTVNFGPQHPAAHGVLRLILEINGEEIIRADPHVGLLHRGTEKLCEYKTYLQ 165
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+ M E +ALAVEKLL IEIP R + IR L+ EI R+L+HL++V + A
Sbjct: 166 ALPYFDRLDYVSMMTNEQCFALAVEKLLNIEIPQRAKYIRTLFGEITRVLNHLMSVLSHA 225
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTP LWGFEEREKLM FYER SG+RMHAAY RPGGVHQDIP L++DI W F
Sbjct: 226 MDVGALTPFLWGFEEREKLMEFYERVSGARMHAAYVRPGGVHQDIPIGLLDDIYQWATQF 285
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L++ ++LT NRI+ R +G V +A F+GVM+RGSG WD+RK+QPY+ Y
Sbjct: 286 GDRLDETEEMLTDNRIWINRLQGVGVVSAAEALNLSFTGVMLRGSGVPWDIRKAQPYDAY 345
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+++FD+P+G +GDCYDRYL RM E R+S++II QC+N++ GP+ D K+ PP
Sbjct: 346 DQVEFDVPVGINGDCYDRYLCRMEEFRQSLRIIHQCLNQMPA----GPIRVEDYKVSPPP 401
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R MK +ME+LIHHF L+T+GY VP G+ Y+A+EAPKGE GVY++SDG +PYR IRAP
Sbjct: 402 RVAMKENMEALIHHFLLFTKGYTVPPGDTYSAIEAPKGEMGVYVVSDGSERPYRVHIRAP 461
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHL + + +GH LAD AI+G++D+VFGEVDR
Sbjct: 462 GFAHLAGFDHISRGHLLADAVAIIGTMDLVFGEVDR 497
>gi|163741489|ref|ZP_02148880.1| NADH dehydrogenase subunit D [Phaeobacter gallaeciensis 2.10]
gi|161385223|gb|EDQ09601.1| NADH dehydrogenase subunit D [Phaeobacter gallaeciensis 2.10]
Length = 403
Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats.
Identities = 288/394 (73%), Positives = 338/394 (85%), Gaps = 3/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++K R+F INFGPQHPAAHGVLRL+LELDGEIVER DPHIGLLHRGTEKL+E++T+LQ +
Sbjct: 13 EQKIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNL 72
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYVAPMNQEHA+ LA+EKL G+E+P R LIRVLYSEIGRIL+HLLNVTTQAMD
Sbjct: 73 PYFDRLDYVAPMNQEHAWCLAIEKLTGVEVPRRASLIRVLYSEIGRILNHLLNVTTQAMD 132
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTPPLWGFEEREKLM+FYERA G+R+HAAYFRPGGVHQD+P L++DI W +FP+
Sbjct: 133 VGALTPPLWGFEEREKLMIFYERACGARLHAAYFRPGGVHQDLPDALIDDIEAWTHTFPA 192
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++DI LLT NRIFKQRN +IG V ED +GFSGVM+RGSG AWDLR+SQPYECY E
Sbjct: 193 VMDDIDGLLTENRIFKQRNADIGVVTEEDILNYGFSGVMVRGSGLAWDLRRSQPYECYDE 252
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF IP+GK+GDCYDRYLVRM EMR+S+ IIRQC+ +L + K+ PP R
Sbjct: 253 FDFQIPVGKNGDCYDRYLVRMEEMRQSLSIIRQCIGKLRETPGD---ILARGKLTPPNRR 309
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
DMK SMESLIHHFKLYTEG+HVP GEVYAAVEAPKGEFGVYL++DG NKPYR K+RAPG+
Sbjct: 310 DMKTSMESLIHHFKLYTEGFHVPAGEVYAAVEAPKGEFGVYLVADGTNKPYRAKLRAPGF 369
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQAM+++ KGHQLADV+AI+G++D+VFGE+DR
Sbjct: 370 LHLQAMDYVAKGHQLADVAAIIGTMDVVFGEIDR 403
>gi|291397570|ref|XP_002715203.1| PREDICTED: NADH dehydrogenase (ubiquinone) Fe-S protein 2
[Oryctolagus cuniculus]
Length = 463
Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats.
Identities = 245/389 (62%), Positives = 311/389 (79%), Gaps = 4/389 (1%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
+ T+NFGPQHPAAHGVLRL++EL GE+V + DPHIGLLHRGTEKLIE KT+LQA+PYFDR
Sbjct: 79 NLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDR 138
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
LDYV+ M E AY+LAVEKLL I+ P R Q IRVL+ EI R+L+H++ VTT A+D+GA+T
Sbjct: 139 LDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRLLNHIMAVTTHALDIGAMT 198
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
P W FEEREK+ FYER SG+RMHAAY RPGGVHQD+P L++DI + +F ++++
Sbjct: 199 PFFWMFEEREKMFEFYERVSGARMHAAYVRPGGVHQDLPLGLMDDIYEFSKNFSLRIDEV 258
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
++LT NRI++ R ++IG + EDA +GFSGVM+RGSG WDLRK+QPY+ Y +++FD+
Sbjct: 259 EEMLTNNRIWRNRTIDIGVITAEDALNYGFSGVMLRGSGIQWDLRKTQPYDAYDQVEFDV 318
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
PIG GDCYDRYL R+ EMR+S++II QC+N++ G + D K+ PPKRA+MK S
Sbjct: 319 PIGSRGDCYDRYLCRVEEMRQSLRIISQCLNKM----PPGEIKVDDAKVSPPKRAEMKTS 374
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
MESLIHHFKLYTEGY VP G Y A+EAPKGEFGVYL+SDG ++PYRCKI+APG+AHL
Sbjct: 375 MESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAG 434
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 435 LDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
>gi|162279924|ref|NP_064055.2| NADH dehydrogenase subunit 7 [Beta vulgaris subsp. vulgaris]
gi|323435033|ref|YP_004222248.1| NADH dehydrogenase subunit 7 [Beta vulgaris subsp. maritima]
gi|87248044|gb|ABD36076.1| NADH dehydrogenase subunit 7 [Beta vulgaris subsp. vulgaris]
gi|148491428|dbj|BAA99447.2| NADH dehydrogenase subunit 7 [Beta vulgaris subsp. vulgaris]
gi|317905686|emb|CBJ14080.1| NADH dehydrogenase subunit 7 [Beta vulgaris subsp. maritima]
gi|319439766|emb|CBJ17489.1| NADH dehydrogenase subunit 7 [Beta vulgaris subsp. maritima]
Length = 391
Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats.
Identities = 254/393 (64%), Positives = 317/393 (80%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
++ ++FT+NFGPQHPAAHGVLRL+LE++GE+VER +PHIGLLHRGTEKLIE KT+LQA+P
Sbjct: 3 RQIKNFTLNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQALP 62
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M QEHAY+LAVE+LL E+P+R Q IRVL+ EI RIL+HLL +TT AMDV
Sbjct: 63 YFDRLDYVSMMAQEHAYSLAVERLLNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMDV 122
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP LW FEEREKL+ FYER SG+RMHA++ RPGGV QD+P L DI + F S
Sbjct: 123 GALTPFLWAFEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCRDIDSFTQQFASR 182
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
++++ ++LTGNRI+KQR V+IGTV + A WGFSGVM+RGSG WDLR++ PY+ Y +L
Sbjct: 183 IDELEEMLTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGSGVCWDLRRAAPYDVYDQL 242
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DFD+P+G GDCYDRY +R+ EMR+SV+II QC+N++ G + A D K+ PP R
Sbjct: 243 DFDVPVGTRGDCYDRYCIRIEEMRQSVRIIVQCLNQM----PSGMIKADDRKLCPPSRYR 298
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK SMESLIHHF+LYTEG+ VP Y AVEAPKGEFGV+L+S+G N+PYRCKIRAPG+A
Sbjct: 299 MKLSMESLIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFA 358
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ ++F+ K H LADV I+G+ DIVFGEVDR
Sbjct: 359 HLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 391
>gi|149927544|ref|ZP_01915798.1| NADH dehydrogenase subunit D [Limnobacter sp. MED105]
gi|149823817|gb|EDM83043.1| NADH dehydrogenase subunit D [Limnobacter sp. MED105]
Length = 417
Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats.
Identities = 242/418 (57%), Positives = 306/418 (73%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+V+R DPHIGLLHRGTEKL E KTF+Q++P
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRGTEKLAEHKTFIQSLP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY +A+EKLL IE+P+R Q IRV++ EI RIL+HLL + +DV
Sbjct: 62 YMDRLDYVSMMCNEHAYCMAIEKLLNIEVPVRAQYIRVMFDEITRILNHLLWLGAHGLDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE LM YE SG+R+HAAYFRPGGV++D+P +
Sbjct: 122 GAMAVFLYAFREREDLMDCYEAVSGARLHAAYFRPGGVYRDLPDRMPQYKPSKVRSAKKV 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ + + FP +++ LLT NRI+KQR V +G V E A GF+
Sbjct: 182 DALNKNRQGSLLDFLDDFTQRFPKYVDEYETLLTDNRIWKQRLVGVGVVTPERALSMGFT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG AWDLRK QPYE Y LDFDIP+GK+GDCYDRYLVR+ EMR+S KII+QC++
Sbjct: 242 GPMLRGSGIAWDLRKKQPYEVYDRLDFDIPVGKNGDCYDRYLVRVEEMRQSNKIIKQCID 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + + K+ PPKR DMK +ME LIHHFKL+TEG HVP GE YAAVE PKG
Sbjct: 302 WL--RVNPGPVMSDNHKVTPPKRVDMKTNMEELIHHFKLFTEGMHVPEGESYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YL++DG NKPYR KIRAPG+AHLQ ++ + +GH LADV I+G+ DIVFGE+DR
Sbjct: 360 EFGIYLVADGANKPYRLKIRAPGFAHLQGLDEMSRGHMLADVVTIIGTQDIVFGEIDR 417
>gi|126310813|ref|XP_001371966.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein
2, 49kDa (NADH-coenzyme Q reductase) [Monodelphis
domestica]
Length = 463
Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats.
Identities = 245/394 (62%), Positives = 312/394 (79%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K + T+NFGPQHPAAHGVLRL++EL GE+V + DPHIGLLHRGTEKLIE KT+LQA+
Sbjct: 74 DTKVANVTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQAL 133
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E Y+LAVEKLL I+ PIR Q IRVL+ EI R+L+H++ +TT A+D
Sbjct: 134 PYFDRLDYVSMMCNEQCYSLAVEKLLNIQPPIRAQWIRVLFGEITRLLNHIMALTTHALD 193
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA+TP W FEEREK+ FYER SG+RMHAAY RPGGVHQD+P L++DI + +F
Sbjct: 194 IGAMTPFFWMFEEREKMFEFYERVSGARMHAAYVRPGGVHQDMPLGLMDDIYEFAKNFSI 253
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++++ ++LT NRI++ R ++IG V E+A +GFSGVM+RGSG WDLRK+QPY+ Y +
Sbjct: 254 RIDELEEMLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDAYDQ 313
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++FD+PIG GDCYDRYL R+ EMR+S++II QC+N++ G + D K+ PPKRA
Sbjct: 314 VEFDVPIGSRGDCYDRYLCRVEEMRQSLRIILQCLNKM----PPGEIKVDDAKVSPPKRA 369
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SMESLIHHFKLYTEGY VP G Y A+EAPKGEFGVYL+SDG ++PYRCKI+APG+
Sbjct: 370 EMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGF 429
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL ++ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 430 AHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
>gi|218534471|sp|B0BX71|NUOD_RICRO RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
Length = 391
Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats.
Identities = 255/394 (64%), Positives = 312/394 (79%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ T+N GPQHPA HGVLRLILE+DGE+V DPHIGLLHRGTEKLIE KT+LQA+
Sbjct: 2 TNNTKTITLNLGPQHPATHGVLRLILEMDGEVVNNADPHIGLLHRGTEKLIEHKTYLQAI 61
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+PM QEHA+ALAVE LL E+P R Q IRVL+SE+ RIL+H LN+ +QA+D
Sbjct: 62 PYFDRLDYVSPMCQEHAFALAVESLLECEVPRRAQFIRVLFSELTRILNHTLNIGSQALD 121
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA TP LW FEEREK+M FYE SGSRMH+ YFRPGGV D+P L+EDI + + FP
Sbjct: 122 IGATTPLLWLFEEREKIMEFYEHVSGSRMHSNYFRPGGVVADLPEGLLEDIDKFIEQFPP 181
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+DI LL NR++KQR V+IG V ++A WGFSG M+RGSG AWDLRKS PY+ Y E
Sbjct: 182 KLHDIESLLNENRLWKQRLVDIGVVSQKEAMDWGFSGPMLRGSGIAWDLRKSNPYDVYDE 241
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+DF +PIGK+GDCYDRY VRM+EM ES+KII+QC+ ++ G + DPK+ PP RA
Sbjct: 242 MDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQCIEKM----PKGAIKTDDPKLTPPTRA 297
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
MK SME++IHHFKLYTEGY VP GE Y AVEAPKGEFGVYL S GGN+PYRC+I+APG+
Sbjct: 298 KMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGEFGVYLYSRGGNRPYRCRIKAPGF 357
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ ++F+ +GH +ADV I+ +LDIVFGE+DR
Sbjct: 358 AHLQGLDFMSQGHLMADVITIIATLDIVFGEIDR 391
>gi|157803905|ref|YP_001492454.1| NADH dehydrogenase subunit D [Rickettsia canadensis str. McKiel]
gi|157785168|gb|ABV73669.1| NADH dehydrogenase delta subunit [Rickettsia canadensis str.
McKiel]
Length = 395
Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats.
Identities = 254/394 (64%), Positives = 311/394 (78%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++ T+N GPQHPA HGVLRLILE+DGE+V DPHIGLLHRGTEKLIE KT+LQA+
Sbjct: 6 TNNIKTITLNLGPQHPATHGVLRLILEMDGEVVNNTDPHIGLLHRGTEKLIEHKTYLQAI 65
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+PM QEHA+ALAVE LL E+P R Q IRVL+SE+ RIL+H LN+ +QA+D
Sbjct: 66 PYFDRLDYVSPMCQEHAFALAVESLLKCEVPRRAQFIRVLFSELTRILNHTLNIGSQALD 125
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA TP LW FEEREK+M FYER SGSRMH+ YFRPGGV +D+P L+EDI + + F
Sbjct: 126 IGATTPLLWLFEEREKIMEFYERVSGSRMHSNYFRPGGVAEDLPDGLLEDIDKFIEQFHP 185
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L D+ LL NR++KQR V+IG V ++A WGFSG M+RGSG AWDLRKS PY+ Y E
Sbjct: 186 KLQDVESLLNENRLWKQRLVDIGVVLQQEAMEWGFSGPMLRGSGIAWDLRKSNPYDVYDE 245
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+DF++PIGK+GDCYDRYLVR++EM ES+KII+QC+ ++ G V +DPK+ PP RA
Sbjct: 246 IDFEVPIGKNGDCYDRYLVRILEMYESIKIIKQCIEKM----PKGAVKTNDPKLTPPTRA 301
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
MK SME++IHHFKLYTEGY VP GE Y AVEAPKGEFGVYL S G N+PYRC+I+ PG+
Sbjct: 302 KMKESMEAMIHHFKLYTEGYEVPAGETYKAVEAPKGEFGVYLYSIGNNQPYRCRIKTPGF 361
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ + F+ KGH +ADV I+ +LDIVFGE+DR
Sbjct: 362 AHLQGLNFMSKGHLMADVITIIATLDIVFGEIDR 395
>gi|261364350|ref|ZP_05977233.1| NADH dehydrogenase, D subunit [Neisseria mucosa ATCC 25996]
gi|288567614|gb|EFC89174.1| NADH dehydrogenase, D subunit [Neisseria mucosa ATCC 25996]
Length = 418
Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats.
Identities = 251/417 (60%), Positives = 308/417 (73%), Gaps = 27/417 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K R++TINFGPQHPAAHGVLR+ILELDGE + R DPHIGLLHRGTEKL ETKT+LQA+PY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELDGEQIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDYV+ M E AY LAVEKL GI++PIR Q IRV+++E+ RIL+HL+ + + A D+G
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP----------------- 167
A+T L+ F +RE+LM YE SG+RMHAAYFRPGGV++D+P
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKFRNAKVLQ 183
Query: 168 --------ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
+++ I +C+ FP ++ + LLT NRI+KQR V IG V E A GF+G
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTG 243
Query: 220 VMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR 279
VM+RGSG WD+RK QPYE Y ++DFDIP+G +GDCYDRYL RM EMR+SV+II+QCV+
Sbjct: 244 VMLRGSGVEWDVRKKQPYEVYDQMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCVDW 303
Query: 280 LLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGE 339
L + GPV ++ K PPKR +MK ME LIHHFKL+TEG HVP GE Y AVE PKGE
Sbjct: 304 L--RVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGE 361
Query: 340 FGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
FGVY+ISDG NKPYR KIRAPG+AHLQ M+ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 362 FGVYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|171696334|ref|XP_001913091.1| hypothetical protein [Podospora anserina S mat+]
gi|170948409|emb|CAP60573.1| unnamed protein product [Podospora anserina S mat+]
Length = 512
Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats.
Identities = 238/396 (60%), Positives = 303/396 (76%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+D +K R +T+NFGPQHPAAHGVLRLILEL GE + R DPH+GLLHRGTEKL E KT+LQ
Sbjct: 121 VDDRKVRHYTVNFGPQHPAAHGVLRLILELSGEEIVRADPHVGLLHRGTEKLCEYKTYLQ 180
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+ M E ++LAVEKLL +EIP R + IR L+ EI RIL+HL++V + A
Sbjct: 181 ALPYFDRLDYVSMMTNEQCFSLAVEKLLNVEIPERAKFIRTLFGEITRILNHLMSVLSHA 240
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTP LWGFEEREKLM FYER SG+R+HAAY RPGGVHQDIP L++DI W F
Sbjct: 241 MDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPMGLLDDIYQWATQF 300
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+++ ++LT NRI+ R +G V +A F+GVM+RGSG +D+RKSQPY+ Y
Sbjct: 301 GDRIDETEEMLTDNRIWINRLKGVGVVSAAEAINLSFTGVMLRGSGVPFDIRKSQPYDAY 360
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+++FD+P+G +GDCYDRYL RM E R+S++II QC+N++ GPV D KI PP
Sbjct: 361 DQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNKMPA----GPVRVEDYKISPPP 416
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R+ MK +ME+LIHHF LYT+GY VP G+ Y+A+EAPKGE GVY++SDG +PYR IRAP
Sbjct: 417 RSAMKENMEALIHHFLLYTKGYAVPPGDTYSAIEAPKGEMGVYVVSDGSERPYRVHIRAP 476
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHL + + KGH LAD A++G++D+VFGEVDR
Sbjct: 477 GFAHLGGFDHISKGHLLADAVAVIGTMDLVFGEVDR 512
>gi|84686431|ref|ZP_01014325.1| NADH dehydrogenase delta subunit [Maritimibacter alkaliphilus
HTCC2654]
gi|84665614|gb|EAQ12090.1| NADH dehydrogenase delta subunit [Rhodobacterales bacterium
HTCC2654]
Length = 407
Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats.
Identities = 289/394 (73%), Positives = 338/394 (85%), Gaps = 1/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ R+F INFGPQHPAAHGVLRL+LELDGEIVER DPHIGLLHRGTEKL+E++T+LQ +
Sbjct: 15 EQQIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNL 74
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV MNQEHA+ L +EKL G+E+P R LIRVLYSEIGRIL+HLLNVTTQAMD
Sbjct: 75 PYFDRLDYVGTMNQEHAWCLVIEKLCGVEVPRRASLIRVLYSEIGRILNHLLNVTTQAMD 134
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTPPLWGFEEREKLM+FYERASG+R+HAAYFRPGGVHQD+PP+L++DI WC FP+
Sbjct: 135 VGALTPPLWGFEEREKLMIFYERASGARLHAAYFRPGGVHQDLPPKLIDDIEAWCHEFPA 194
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+DI LLT NR+FKQRNV+IG + E+ WG+SGVM+RGSG AWDLR+SQPYECY E
Sbjct: 195 VLDDIDGLLTENRVFKQRNVDIGVITEEEILDWGYSGVMVRGSGFAWDLRRSQPYECYDE 254
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF + IGK+GDCYDRYLVRM EMRESVKI+ Q + +L G V + K+ PPKRA
Sbjct: 255 FDFKVCIGKNGDCYDRYLVRMAEMRESVKIMLQAIEKLRAPEGQGDVL-ARGKLTPPKRA 313
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
DMK SME+LIHHFKLYTEG+HVP GEVY AVEAPKGEFGVYL+SDG NKPYR K+RAPGY
Sbjct: 314 DMKTSMEALIHHFKLYTEGFHVPAGEVYCAVEAPKGEFGVYLVSDGTNKPYRAKLRAPGY 373
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ+M+ + GHQLADV+AI+G++DIVFGEVDR
Sbjct: 374 LHLQSMDHVASGHQLADVAAIIGTMDIVFGEVDR 407
>gi|115495721|ref|NP_001068605.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial precursor [Bos taurus]
gi|116242673|sp|P17694|NDUS2_BOVIN RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
2, mitochondrial; AltName: Full=Complex I-49kD;
Short=CI-49kD; AltName: Full=NADH-ubiquinone
oxidoreductase 49 kDa subunit; Flags: Precursor
gi|112362375|gb|AAI19925.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [Bos taurus]
gi|296489840|gb|DAA31953.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial precursor [Bos taurus]
Length = 463
Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats.
Identities = 247/389 (63%), Positives = 311/389 (79%), Gaps = 4/389 (1%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
+ T+NFGPQHPAAHGVLRL++EL GE+V + DPHIGLLHRGTEKLIE KT+LQA+PYFDR
Sbjct: 79 NLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDR 138
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
LDYV+ M E AY+LAVEKLL I+ P R Q IRVL+ EI R+L+H++ VTT A+D+GA+T
Sbjct: 139 LDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRLLNHIMAVTTHALDIGAMT 198
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
P W FEEREK+ FYER SG+RMHAAY RPGGVHQD+P L++DI + +F ++++
Sbjct: 199 PFFWMFEEREKMFEFYERVSGARMHAAYVRPGGVHQDLPLGLMDDIYEFSKNFSLRIDEL 258
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
++LT NRI++ R V+IG V EDA +GFSGVM+RGSG WDLRK+QPY+ Y +++FD+
Sbjct: 259 EEMLTNNRIWRNRTVDIGIVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDV 318
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
PIG GDCYDRYL R+ EMR+S++II QC+N++ G + D K+ PPKRA+MK S
Sbjct: 319 PIGSRGDCYDRYLCRVEEMRQSIRIISQCLNKM----PPGEIKVDDAKVSPPKRAEMKTS 374
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
MESLIHHFKLYTEGY VP G Y A+EAPKGEFGVYL+SDG ++PYRCKI+APG+AHL
Sbjct: 375 MESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAG 434
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 435 LDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
>gi|157828356|ref|YP_001494598.1| NADH dehydrogenase subunit D [Rickettsia rickettsii str. 'Sheila
Smith']
gi|218534470|sp|A8GRR5|NUOD_RICRS RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|157800837|gb|ABV76090.1| NADH dehydrogenase subunit D [Rickettsia rickettsii str. 'Sheila
Smith']
Length = 391
Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats.
Identities = 254/394 (64%), Positives = 312/394 (79%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ T+N GPQHPA HGVLRLILE+DGE+V DPHIGLLHRGTEKLIE KT+LQA+
Sbjct: 2 TNNTKTITLNLGPQHPATHGVLRLILEMDGEVVNNADPHIGLLHRGTEKLIEHKTYLQAI 61
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+PM QEHA+ALAVE LL ++P R Q IRVL+SE+ RIL+H LN+ +QA+D
Sbjct: 62 PYFDRLDYVSPMCQEHAFALAVESLLECKVPRRAQFIRVLFSELTRILNHTLNIGSQALD 121
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA TP LW FEEREK+M FYE SGSRMH+ YFRPGGV D+P L+EDI + + FP
Sbjct: 122 IGATTPLLWLFEEREKIMEFYEHVSGSRMHSNYFRPGGVVADLPEGLLEDIDKFIEQFPP 181
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+DI LL NR++KQR V+IG V ++A WGFSG M+RGSG AWDLRKS PY+ Y E
Sbjct: 182 KLHDIESLLNENRLWKQRLVDIGVVSQKEAMDWGFSGPMLRGSGIAWDLRKSNPYDVYDE 241
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+DF +PIGK+GDCYDRY VRM+EM ES+KII+QC+ ++ G + DPK+ PP RA
Sbjct: 242 MDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQCIEKM----PKGAIKTDDPKLTPPTRA 297
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
MK SME++IHHFKLYTEGY VP GE Y AVEAPKGEFGVYL S GGN+PYRC+I+APG+
Sbjct: 298 KMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGEFGVYLYSRGGNRPYRCRIKAPGF 357
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ ++F+ +GH +ADV I+ +LDIVFGE+DR
Sbjct: 358 AHLQGLDFMSQGHLMADVITIIATLDIVFGEIDR 391
>gi|254440303|ref|ZP_05053797.1| NADH dehydrogenase (quinone), D subunit [Octadecabacter antarcticus
307]
gi|198255749|gb|EDY80063.1| NADH dehydrogenase (quinone), D subunit [Octadecabacter antarcticus
307]
Length = 415
Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats.
Identities = 277/395 (70%), Positives = 330/395 (83%), Gaps = 2/395 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ R+F INFGPQHPAAHGVLRL+LELDGEIVER DPHIGLLHRGTEKL+E++T+LQ +
Sbjct: 22 EQQIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNL 81
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+PMNQEHA+ LA+E+L G +P R LIRVL+ EIGRILSHLLNVTTQAMD
Sbjct: 82 PYFDRLDYVSPMNQEHAWCLAIEQLTGTVVPRRASLIRVLFCEIGRILSHLLNVTTQAMD 141
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP- 181
VGALTPP+WGFEERE+LMVF ERASG+R+HAAYFRPGGVHQD+P L+ DI W D F
Sbjct: 142 VGALTPPVWGFEEREQLMVFSERASGARLHAAYFRPGGVHQDLPAGLITDIEAWADQFMT 201
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+ D+ +LLT NRIFKQRNV+IG V +D WGFSGVM RGSG AWDLR++QPYECY
Sbjct: 202 KFMVDVDELLTENRIFKQRNVDIGVVNEQDILDWGFSGVMARGSGLAWDLRRAQPYECYD 261
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
E +F IP+GK+GDCYDRYL RM EMR+SV IIRQ + +L + GP+ + K+ PP R
Sbjct: 262 EFEFQIPVGKNGDCYDRYLCRMEEMRQSVSIIRQAIVKLREPDGQGPIM-ASGKLTPPTR 320
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+MK SME+LIHHFKLYTEG+HVP GE YA VEAPKGEFGV+L++DG NKPYR KIRAPG
Sbjct: 321 GEMKTSMEALIHHFKLYTEGFHVPAGETYACVEAPKGEFGVFLVADGSNKPYRAKIRAPG 380
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ HLQAM+F+ HQLADV+AI+GS+D+VFGE+DR
Sbjct: 381 FLHLQAMDFMATKHQLADVAAIIGSIDVVFGEIDR 415
>gi|294340858|emb|CAZ89253.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
(NDH-1, chain D) [Thiomonas sp. 3As]
Length = 417
Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats.
Identities = 237/418 (56%), Positives = 305/418 (72%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+++T+NFGPQHPAAHGVLRL+LELDGE+V+R DPHIGLLHR TEKL E KT++QA+P
Sbjct: 2 ADIKNYTLNFGPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRATEKLAEHKTYIQALP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY LA+EKLLG+E+P+RGQ IRV+++EI R+L+HL+ + +D
Sbjct: 62 YMDRLDYVSMMCNEHAYCLAIEKLLGVEVPLRGQYIRVMFAEITRLLNHLMWLGAHGLDC 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+T L+ F ERE L YE SG+RMHAAYFRPGGV++D+P +
Sbjct: 122 GAMTVFLYAFREREDLFDMYEAVSGARMHAAYFRPGGVYRDLPDSMAQYGESKIRNARAV 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP+ +++ LLT NRI+KQR V IG V E A G +
Sbjct: 182 EARNAGRQGSLLDFIDDFTQRFPAYVDEYETLLTDNRIWKQRTVGIGVVSPERAMNLGMT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG WDLRK+QPY+ Y +DFDIP+GK+GDCYDRYLVRM EMR+S +II+QCV+
Sbjct: 242 GPMLRGSGVVWDLRKTQPYDVYDRMDFDIPVGKNGDCYDRYLVRMEEMRQSNRIIKQCVD 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ P R +MK SME+LIHHFKL++EG VP G+ YAAVE PKG
Sbjct: 302 WL--RANPGPVITDNHKVAAPAREEMKTSMEALIHHFKLFSEGMRVPEGQAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YL+SDG NKPYR KIRAPG+AHL A++ + +GH +ADV AI+G+LDIVFGE+DR
Sbjct: 360 EFGIYLVSDGANKPYRLKIRAPGFAHLAALDEMSRGHMIADVVAIIGTLDIVFGEIDR 417
>gi|332557946|ref|ZP_08412268.1| NADH dehydrogenase subunit D [Rhodobacter sphaeroides WS8N]
gi|332275658|gb|EGJ20973.1| NADH dehydrogenase subunit D [Rhodobacter sphaeroides WS8N]
Length = 394
Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats.
Identities = 283/394 (71%), Positives = 338/394 (85%), Gaps = 3/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++K R+F INFGPQHPAAHGVLRL+LELDGE+VER DPHIGLLHRGTEKL+E++T+LQ +
Sbjct: 4 EQKLRNFNINFGPQHPAAHGVLRLVLELDGEVVERCDPHIGLLHRGTEKLMESRTYLQNL 63
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYVAPMNQEHA+ LA+E+L G+ +P R LIRVLYSEIGR+L+HLLNVTTQAMD
Sbjct: 64 PYFDRLDYVAPMNQEHAWCLAIERLTGVAVPRRASLIRVLYSEIGRVLNHLLNVTTQAMD 123
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTPPLWGFEEREKLMVFYERASG+R+HAAYFRPGGVHQD+ P L+EDI W + FP
Sbjct: 124 VGALTPPLWGFEEREKLMVFYERASGARLHAAYFRPGGVHQDLTPRLIEDIEEWAEHFPK 183
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+D+ +LLT NRIFKQRNV+IG + +D WGFSGVM+RGSG AWDLR+SQPYECY E
Sbjct: 184 VLDDLDELLTENRIFKQRNVDIGIISEKDILDWGFSGVMVRGSGFAWDLRRSQPYECYDE 243
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF IP+GK+GDCYDRYL RM EMR+S +II+QC+ +L + + K+ PP R
Sbjct: 244 FDFQIPVGKNGDCYDRYLCRMEEMRQSTRIIQQCLAKLRVEKGDV---LARGKLTPPPRG 300
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SME+LIHHFKLYTEG+HVP GEVYAAVEAPKGEFGVYL++DG N+PYR KIRAPG+
Sbjct: 301 EMKTSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKGEFGVYLVADGTNRPYRAKIRAPGF 360
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQA++++ KGH LADVSAI+G+LD+VFGE+DR
Sbjct: 361 LHLQAIDYIAKGHLLADVSAIIGTLDVVFGEIDR 394
>gi|91203917|emb|CAJ71570.1| strongly similar to to proton-translocating NADH dehydrogenase I 49
kDa subunit (NuoD) [Candidatus Kuenenia stuttgartiensis]
Length = 396
Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats.
Identities = 193/393 (49%), Positives = 263/393 (66%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K + +IN GPQHP+ HGVLRLILE+DGE + + P IG LHRG EKL E KT+ Q +P
Sbjct: 8 KTTHMMSINMGPQHPSTHGVLRLILEMDGETITKAAPDIGFLHRGVEKLAEYKTYHQFIP 67
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DRLDYVAP + AYALAVEKL+G+EIP R Q IRV+ E+ RI SHLL + T A+D+
Sbjct: 68 LTDRLDYVAPFSNNLAYALAVEKLIGVEIPERAQHIRVMLCELTRISSHLLWLATHALDL 127
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+T + F ERE L +E SGSRM+ +Y R GGV D+P ++ + + + FPS
Sbjct: 128 GAMTVFFYCFRERETLYDIFEMVSGSRMNLSYIRIGGVAHDLPGGFLKSVEKFVNEFPSK 187
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L + LL N I+K+R + +G + E+A +G SG +RGSG WD+RK++PY Y +
Sbjct: 188 LKEYEILLKDNPIWKKRTIGVGYISPEEAIDYGLSGPSLRGSGVDWDVRKAEPYSSYDKY 247
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DF++P+G HGD YDRY VR+ EM +S I++Q ++ G A P + P +
Sbjct: 248 DFNVPLGVHGDVYDRYRVRIEEMIQSNNIVKQALD----ILPKGDHIAHAPAVALPAKEA 303
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
++ +ME++IHHFKL T+G P GEVY+ VEAPKGE G Y++SDG N+PYR KIR P +
Sbjct: 304 VETNMEAMIHHFKLITDGICPPKGEVYSCVEAPKGELGFYIVSDGSNRPYRLKIRPPSFV 363
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L+A+ + +G L DV A++GSLDIV GE+DR
Sbjct: 364 NLEALPKMVEGKMLPDVVAVIGSLDIVLGEIDR 396
>gi|218534458|sp|A8F1C5|NUOD_RICM5 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
Length = 391
Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats.
Identities = 255/394 (64%), Positives = 310/394 (78%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ T+N GPQHPA HGVLRLILE+DGE+V PHIGLLHRGTEKLIE KT+LQA+
Sbjct: 2 TNNTKTITLNLGPQHPATHGVLRLILEMDGEVVNNAVPHIGLLHRGTEKLIEHKTYLQAI 61
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+PM QEHA+ALAVE LL E+P R Q IRVL+SE+ RIL+H LN+ +QA+D
Sbjct: 62 PYFDRLDYVSPMCQEHAFALAVESLLECEVPRRAQFIRVLFSELTRILNHTLNIGSQALD 121
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA TP LW FEEREK+M FYE SGSRMH+ YFRPGGV D+P L+EDI + + FP
Sbjct: 122 IGATTPLLWLFEEREKIMEFYEHVSGSRMHSNYFRPGGVAADLPEGLLEDIDKFIEQFPP 181
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+DI LL NR++KQR V+IG ++A WGFSG M+RGSG AWDLRKS PY+ Y E
Sbjct: 182 KLHDIESLLNENRLWKQRLVDIGVASQKEAMDWGFSGPMLRGSGIAWDLRKSNPYDVYDE 241
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+DF +PIGK+GDCYDRY VRM+EM ES+KII+QC+ ++ G V DPK+ PP RA
Sbjct: 242 MDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQCIEKM----PKGAVKTDDPKLTPPTRA 297
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
MK SME++IHHFKLYTEGY VP GE Y AVEAPKGEFGVYL S GGN+PYRC+I+APG+
Sbjct: 298 KMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGEFGVYLYSQGGNRPYRCRIKAPGF 357
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ ++F+ KGH +ADV I+ +LDIVFGE+DR
Sbjct: 358 AHLQGLDFMSKGHLMADVITIIATLDIVFGEIDR 391
>gi|218534457|sp|A8EZ86|NUOD_RICCK RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
Length = 391
Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats.
Identities = 254/394 (64%), Positives = 311/394 (78%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++ T+N GPQHPA HGVLRLILE+DGE+V DPHIGLLHRGTEKLIE KT+LQA+
Sbjct: 2 TNNIKTITLNLGPQHPATHGVLRLILEMDGEVVNNTDPHIGLLHRGTEKLIEHKTYLQAI 61
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+PM QEHA+ALAVE LL E+P R Q IRVL+SE+ RIL+H LN+ +QA+D
Sbjct: 62 PYFDRLDYVSPMCQEHAFALAVESLLKCEVPRRAQFIRVLFSELTRILNHTLNIGSQALD 121
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA TP LW FEEREK+M FYER SGSRMH+ YFRPGGV +D+P L+EDI + + F
Sbjct: 122 IGATTPLLWLFEEREKIMEFYERVSGSRMHSNYFRPGGVAEDLPDGLLEDIDKFIEQFHP 181
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L D+ LL NR++KQR V+IG V ++A WGFSG M+RGSG AWDLRKS PY+ Y E
Sbjct: 182 KLQDVESLLNENRLWKQRLVDIGVVLQQEAMEWGFSGPMLRGSGIAWDLRKSNPYDVYDE 241
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+DF++PIGK+GDCYDRYLVR++EM ES+KII+QC+ ++ G V +DPK+ PP RA
Sbjct: 242 IDFEVPIGKNGDCYDRYLVRILEMYESIKIIKQCIEKM----PKGAVKTNDPKLTPPTRA 297
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
MK SME++IHHFKLYTEGY VP GE Y AVEAPKGEFGVYL S G N+PYRC+I+ PG+
Sbjct: 298 KMKESMEAMIHHFKLYTEGYEVPAGETYKAVEAPKGEFGVYLYSIGNNQPYRCRIKTPGF 357
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ + F+ KGH +ADV I+ +LDIVFGE+DR
Sbjct: 358 AHLQGLNFMSKGHLMADVITIIATLDIVFGEIDR 391
>gi|114560840|ref|XP_001173590.1| PREDICTED: NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) isoform 1 [Pan troglodytes]
Length = 480
Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats.
Identities = 246/390 (63%), Positives = 311/390 (79%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
++ T+NFGPQHPAAHGVLRL++EL GE+V + DPHIGLLHRGTEKLIE KT+LQA+PYFD
Sbjct: 95 KNMTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFD 154
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYV+ M E AY+LAVEKLL I P R Q IRVL+ EI R+L+H++ VTT A+D+GA+
Sbjct: 155 RLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGAM 214
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP W FEEREK+ FYER SG+RMHAAY RPGGVHQD+P L++DI + +F L++
Sbjct: 215 TPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDE 274
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ +LLT NRI++ R ++IG V E+A +GFSGVM+RGSG WDLRK+QPY+ Y +++FD
Sbjct: 275 LEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFD 334
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+P+G GDCYDRYL R+ EMR+S++II QC+N++ G + D K+ PPKRA+MK
Sbjct: 335 VPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKM----PPGEIKVDDAKVSPPKRAEMKT 390
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
SMESLIHHFKLYTEGY VP G Y A+EAPKGEFGVYL+SDG ++PYRCKI+APG+AHL
Sbjct: 391 SMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLA 450
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 451 GLDKMSKGHMLADVVAIIGTQDIVFGEVDR 480
>gi|307101737|ref|YP_003875501.1| NADH dehydrogenase subunit 7 [Silene latifolia]
gi|301338032|gb|ADK73324.1| NADH dehydrogenase subunit 7 [Silene latifolia]
Length = 394
Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats.
Identities = 255/394 (64%), Positives = 317/394 (80%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
KK+ ++FT+NFGPQHPAAHGVLRL+LE++GE+VER +PHIGLLHRGTEKLIE KT+LQA+
Sbjct: 5 KKQIKNFTLNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQAL 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M QEHAY+LAVE+LL E+P+R Q IRVL+ EI RIL+HLL +TT AMD
Sbjct: 65 PYFDRLDYVSMMAQEHAYSLAVERLLNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTP LW FEEREKL+ FYER SG+RMHA++ RPGGV QD+P L DI + F S
Sbjct: 125 VGALTPFLWAFEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCRDIDSFTQQFAS 184
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++++ ++LTGNRI+KQR V+IGTV + A WGFSGVM+RG G WDLR++ PY+ Y +
Sbjct: 185 RIDELEEMLTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGPGVCWDLRRAAPYDVYHQ 244
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LDFD+P+G GDCYDRY +R+ EMR+SV+II QC+N++ G + A D K+ PP R
Sbjct: 245 LDFDVPVGTRGDCYDRYCIRIEEMRQSVRIIVQCLNKM----PSGMIKADDRKLCPPSRY 300
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
MK SMESLIHHF+LYTEG+ VP Y AVEAPKGEFGV+L+S+G N+PYRCKIRAPG+
Sbjct: 301 RMKLSMESLIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGF 360
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ ++F+ K H LADV I+G+ DIVFGEVDR
Sbjct: 361 AHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 394
>gi|289615805|emb|CBI57546.1| unnamed protein product [Sordaria macrospora]
Length = 478
Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats.
Identities = 239/393 (60%), Positives = 302/393 (76%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+K R +T+NFGPQHPAAHGVLRLILEL GE + R DPH+GLLHRGTEKL E +T+LQA+P
Sbjct: 90 RKVRHYTVNFGPQHPAAHGVLRLILELKGEEIVRADPHVGLLHRGTEKLCEYRTYLQALP 149
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M E +ALAVEKLL +EIP R + IR L++EI RIL+HL++V + AMDV
Sbjct: 150 YFDRLDYVSMMTNEQCFALAVEKLLNVEIPERAKWIRTLFAEITRILNHLMSVLSHAMDV 209
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP LWGFEEREKLM FYER SG+R+HAAY RPGGVHQD+P L++DI W F
Sbjct: 210 GALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDLPLGLLDDIYQWATQFGDR 269
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ ++LT NRI+ R IG V DA F+GVM+RGSG WD+RKSQPY+ Y ++
Sbjct: 270 IDETEEMLTDNRIWIDRLRGIGVVSAADALNLSFTGVMLRGSGVPWDIRKSQPYDAYDQV 329
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FD+P+G +GDCYDRYL RM E R+S++II QC+N++ GPV D KI PP R+
Sbjct: 330 EFDVPVGINGDCYDRYLCRMEEFRQSLRIIHQCLNKMPA----GPVRVEDYKISPPPRSA 385
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK +ME+LIHHF LYT+GY VP G+ Y+A+EAPKGE GVY++SDG +PYR IRAPG+A
Sbjct: 386 MKENMEALIHHFLLYTKGYAVPPGDTYSAIEAPKGEMGVYVVSDGTERPYRVHIRAPGFA 445
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HL + L +GH LAD A++G++D+VFGEVDR
Sbjct: 446 HLGGFDHLSRGHMLADAVAVIGTMDLVFGEVDR 478
>gi|197131010|gb|ACH47055.1| NADH dehydrogenase subunit 7 [Isoetes engelmannii]
gi|205277649|gb|ACI02098.1| NADH dehydrogenase subunit 7 [Isoetes engelmannii]
gi|205277651|gb|ACI02100.1| NADH dehydrogenase subunit 7 [Isoetes engelmannii]
gi|217331576|gb|ACK38302.1| NADH dehydrogenase subunit 7 [Isoetes engelmannii]
Length = 396
Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats.
Identities = 255/394 (64%), Positives = 315/394 (79%), Gaps = 5/394 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K+ +FT+NFGPQHPAAHGVLRL+LE+DGE+VER +PHIGLLHRGTEKLIE KT+LQA+P
Sbjct: 7 KRIDNFTLNFGPQHPAAHGVLRLVLEMDGELVERAEPHIGLLHRGTEKLIEYKTYLQALP 66
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M QEHAY+LAVE+L E+P+R Q IRVL+ EI RIL+HLL +TT AMDV
Sbjct: 67 YFDRLDYVSMMAQEHAYSLAVERLCNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMDV 126
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP LW FEEREKL FYER SG+RMHA+Y RPGGV QD+P L EDI + F S
Sbjct: 127 GALTPFLWAFEEREKLFEFYERVSGARMHASYVRPGGVAQDLPSGLSEDIFLFTQEFASR 186
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
++++ ++LT NRI+KQR V+IG V E+A WGFSGVM+RGSG WDLRK+ PY+ Y L
Sbjct: 187 IDELEEMLTNNRIWKQRLVDIGIVTAEEALDWGFSGVMLRGSGVCWDLRKAAPYDVYDLL 246
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DFD+P+G GDCYDRY +R+ EMRES++I+ QC+N++ G + A D K+ PP R++
Sbjct: 247 DFDVPVGTRGDCYDRYRIRIEEMRESLRIMVQCLNKM----PSGMIKADDCKLCPPSRSE 302
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGE-VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
MK+SMESLIHHFK YTE + VP YAAVEAPKGEFGV+L+S+G N+PYRC+IRAPG+
Sbjct: 303 MKQSMESLIHHFKHYTECFSVPASSPTYAAVEAPKGEFGVFLVSNGTNRPYRCRIRAPGF 362
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ ++F+ K H LADV I+G+ DIVFGEVDR
Sbjct: 363 AHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 396
>gi|297538953|ref|YP_003674722.1| NADH dehydrogenase I subunit D [Methylotenera sp. 301]
gi|297258300|gb|ADI30145.1| NADH dehydrogenase I, D subunit [Methylotenera sp. 301]
Length = 417
Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats.
Identities = 239/418 (57%), Positives = 312/418 (74%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ R++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHRGTEKL E +T+LQ+VP
Sbjct: 2 AEIRNYTMNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAENRTYLQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M+ EHAY +A+EK++GIE+PIR Q IRV++ EI R+L+HLL + A+DV
Sbjct: 62 YMDRLDYVSMMSNEHAYVMAIEKMMGIEVPIRAQYIRVMFDEITRVLNHLLWLGAHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+T L+ F ERE L YE SG+RMHAAY+RPGGV++D+P ++
Sbjct: 122 GAMTVFLYAFREREDLFDCYEAVSGARMHAAYYRPGGVYRDLPTQMPQYEVSPLRNAKTV 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + + FP +++ LLT NRI+KQR V++G V E A G +
Sbjct: 182 KSQNENRQGSLLDFIEDFVNRFPKYVDEYETLLTDNRIWKQRTVDVGIVTPERALQLGMT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG AWDLRK+QPYE Y+ +DFDIP+G +GDCYDRYLVRM E R+S +II+QCV+
Sbjct: 242 GPMLRGSGIAWDLRKTQPYEVYANMDFDIPVGVNGDCYDRYLVRMEEFRQSNRIIKQCVD 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV +SD K+ PP R MK +ME LIHHFKL+TEG+HVP GE YAAVE PKG
Sbjct: 302 WL--RKNPGPVISSDNKVAPPDREGMKSNMEDLIHHFKLFTEGFHVPAGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+Y++SDG NKPYR KIRAPG+AHL A++ + +GH +AD+ AI+G+ DIVFGE+DR
Sbjct: 360 EFGIYMVSDGANKPYRLKIRAPGFAHLAALDEMTRGHMIADLVAIIGTQDIVFGEIDR 417
>gi|283795065|ref|YP_003359481.1| NADH dehydrogenase subunit 7 [Synedra acus]
gi|261279721|gb|ACX62029.1| NADH dehydrogenase subunit 7 [Synedra acus]
Length = 399
Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats.
Identities = 251/394 (63%), Positives = 317/394 (80%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
KK+ ++FTINFGPQHPAAHGVLRLILELDGE+V R +PHIGLLHRGTEKLIE K +LQA+
Sbjct: 10 KKEVKNFTINFGPQHPAAHGVLRLILELDGEVVVRAEPHIGLLHRGTEKLIEYKNYLQAL 69
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M+QEH+Y LA+EKLL ++IP R Q IRVL++E+ RIL+HLL V AMD
Sbjct: 70 PYFDRLDYVSMMSQEHSYCLAIEKLLQVQIPQRAQYIRVLFAELTRILNHLLAVGCHAMD 129
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP LW FEEREKLM FYER SG+RMHA YFRPGGV+ D+P + D+ + + F
Sbjct: 130 VGAMTPFLWAFEEREKLMEFYERVSGARMHACYFRPGGVYSDLPLGFLSDVFLFLEQFNI 189
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L ++ ++L+ NRI+KQR VNIG V +D++ WGFSGVM+RGSG WDLRKSQPYE Y +
Sbjct: 190 RLIEMEEMLSENRIWKQRLVNIGIVTAQDSYDWGFSGVMLRGSGTYWDLRKSQPYEIYDK 249
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++F IP+ +GDCYDRY++R+MEMR+S+ II QC+N + GPV + + K+ PP RA
Sbjct: 250 INFIIPVTHNGDCYDRYMIRLMEMRQSLIIIEQCLNNM----PKGPVRSENSKVTPPSRA 305
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
DMK+SMESLIHHFK+YT+ VPVGE Y + EAPKGEFGVYL+S+G N+P++CKI+APG+
Sbjct: 306 DMKQSMESLIHHFKMYTQSIIVPVGETYLSTEAPKGEFGVYLVSNGTNRPFKCKIKAPGF 365
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQA+ + KGH +ADV I+G+ DIVFGEVDR
Sbjct: 366 NHLQALNHISKGHMIADVVTIIGTQDIVFGEVDR 399
>gi|296536153|ref|ZP_06898281.1| NADH-quinone oxidoreductase subunit D [Roseomonas cervicalis ATCC
49957]
gi|296263524|gb|EFH10021.1| NADH-quinone oxidoreductase subunit D [Roseomonas cervicalis ATCC
49957]
Length = 405
Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats.
Identities = 267/392 (68%), Positives = 320/392 (81%), Gaps = 4/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ S TINFGPQHPAAHGVLRLILE+ GE+VER DPHIGLLHRGTEKLIE K++LQA+PY
Sbjct: 18 EIDSHTINFGPQHPAAHGVLRLILEMQGEVVERADPHIGLLHRGTEKLIEHKSYLQALPY 77
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
FDRLDYVAPM QEH +ALA EKLLGIE PIR Q IRVL++EI RIL+H+LN+TT A+DVG
Sbjct: 78 FDRLDYVAPMAQEHCFALATEKLLGIEAPIRAQYIRVLFAEISRILNHILNITTYALDVG 137
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A TP LWGFE+RE L+ FY+ SGS HA YFR GGV +D+P L + I W + FP +
Sbjct: 138 ATTPSLWGFEQREILLEFYDATSGSHYHANYFRAGGVAKDLPAGLTDRIAGWAEQFPKFV 197
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+D+ LLTGNRIFKQR V+IG + E+A WGFSG IR SG AWDLR+SQPY+ Y +++
Sbjct: 198 DDVERLLTGNRIFKQRTVDIGVMTAEEAMAWGFSGPCIRASGCAWDLRRSQPYDVYDQME 257
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F+IP+G HGDCY+RYLVR+ EMRES+KII+QC+ ++ G GP+ D KI PPKRA+M
Sbjct: 258 FEIPVGSHGDCYERYLVRIAEMRESLKIIKQCLAQMPG----GPIKVQDSKIAPPKRAEM 313
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
KRSME+LIHHFKLY+EGYHVP G Y AVEAPKGEFGV+L++DG N+PYRCKIRAPG+AH
Sbjct: 314 KRSMEALIHHFKLYSEGYHVPEGSTYTAVEAPKGEFGVFLVADGTNRPYRCKIRAPGFAH 373
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
LQAME L KGH LAD +++GSLDIVFGE+DR
Sbjct: 374 LQAMEKLSKGHMLADAVSVIGSLDIVFGEIDR 405
>gi|170051629|ref|XP_001861851.1| NADH dehydrogenase iron-sulfur protein 2, mitochondrial [Culex
quinquefasciatus]
gi|167872807|gb|EDS36190.1| NADH dehydrogenase iron-sulfur protein 2, mitochondrial [Culex
quinquefasciatus]
Length = 469
Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats.
Identities = 245/394 (62%), Positives = 310/394 (78%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+K R+ +NFGPQHPAAHGVLRL+LELDGE V R DPHIGLLHRGTEKLIE KT+ QA+
Sbjct: 80 EKTVRNVKLNFGPQHPAAHGVLRLVLELDGETVMRSDPHIGLLHRGTEKLIEYKTYTQAL 139
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E Y+LAVEKLL I+IP+R + IRVL++EI RIL+H++ + T A+D
Sbjct: 140 PYFDRLDYVSMMCNEQCYSLAVEKLLNIDIPMRAKYIRVLFAEITRILNHIMAIGTHALD 199
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTP W FEEREK+M FYER SG+RMHAAY RPGGV QD+P L++DI + F
Sbjct: 200 VGALTPFFWLFEEREKMMEFYERVSGARMHAAYVRPGGVSQDMPLGLLDDIYEFASKFGE 259
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+++ D+LT NRI+ QR +IG V EDA +GFSGVM+RGSG WDLRKSQPY+ Y +
Sbjct: 260 RLDEVEDVLTTNRIWVQRTQDIGIVSAEDALNYGFSGVMLRGSGIKWDLRKSQPYDAYDQ 319
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++FD+PIG GDCYDRYL R+ EMR+S++II QC+N++ G V D K+ P R+
Sbjct: 320 VEFDVPIGTKGDCYDRYLCRVEEMRQSLRIIDQCLNKMPA----GDVKTDDAKLCTPSRS 375
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SME+LIHHFKL+T+GY VP G Y A+EAPKGEFGVYL++DG ++PYRCKI+APG+
Sbjct: 376 EMKTSMEALIHHFKLFTQGYQVPPGSTYTAIEAPKGEFGVYLVADGSSRPYRCKIKAPGF 435
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL A++ + K H LAD+ AI+G+LD+VFGE+DR
Sbjct: 436 AHLAALDMVGKHHMLADIVAIIGTLDVVFGEIDR 469
>gi|164427900|ref|XP_965665.2| NADH:ubiquinone oxidoreductase 49kD subunit [Neurospora crassa
OR74A]
gi|166204145|sp|P22142|NDUS2_NEUCR RecName: Full=NADH-ubiquinone oxidoreductase 49 kDa subunit,
mitochondrial; AltName: Full=Complex I-49kD;
Short=CI-49kD; Flags: Precursor
gi|157071928|gb|EAA36429.2| NADH:ubiquinone oxidoreductase 49kD subunit [Neurospora crassa
OR74A]
Length = 478
Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats.
Identities = 239/393 (60%), Positives = 302/393 (76%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+K R +T+NFGPQHPAAHGVLRLILEL GE + R DPH+GLLHRGTEKL E +T+LQA+P
Sbjct: 90 RKVRHYTVNFGPQHPAAHGVLRLILELKGEEIVRADPHVGLLHRGTEKLCEYRTYLQALP 149
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M E +ALAVEKLL +EIP R + IR +++EI RIL+HL++V + AMDV
Sbjct: 150 YFDRLDYVSMMTNEQCFALAVEKLLNVEIPERAKWIRTMFAEITRILNHLMSVLSHAMDV 209
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP LWGFEEREKLM FYER SG+R+HAAY RPGGVHQDIP L++DI W F
Sbjct: 210 GALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPLGLLDDIYMWATQFGDR 269
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ ++LT NRI+ R IG V DA F+GVM+RGSG WD+RKSQPY+ Y ++
Sbjct: 270 IDETEEMLTDNRIWIDRLRGIGVVSAADALNLSFTGVMLRGSGVPWDIRKSQPYDAYDQV 329
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FD+P+G +GDCYDRYL RM E R+S++II QC+N++ GPV D KI PP R+
Sbjct: 330 EFDVPVGINGDCYDRYLCRMEEFRQSLRIIHQCLNKMPA----GPVRVEDYKISPPPRSA 385
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK +ME+LIHHF LYT+GY VP G+ Y+A+EAPKGE GVY++SDG +PYR IRAPG+A
Sbjct: 386 MKENMEALIHHFLLYTKGYAVPPGDTYSAIEAPKGEMGVYVVSDGSERPYRVHIRAPGFA 445
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HL + L +GH LAD A++G++D+VFGEVDR
Sbjct: 446 HLGGFDHLSRGHMLADAVAVIGTMDLVFGEVDR 478
>gi|11466310|ref|NP_051138.1| NADH dehydrogenase subunit 7 [Cafeteria roenbergensis]
gi|11134161|sp|Q9TAJ7|NDUS2_CAFRO RecName: Full=NADH-ubiquinone oxidoreductase 49 kDa subunit;
AltName: Full=NADH dehydrogenase subunit 7
gi|6180092|gb|AAF05789.1|AF193903_12 NADH dehydrogenase subunit 7 [Cafeteria roenbergensis]
Length = 398
Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats.
Identities = 246/396 (62%), Positives = 306/396 (77%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + + + FT+NFGPQHPAAHGVLRLILEL+GE ++ DPHIGLLHRGTEKLIE + +LQ
Sbjct: 7 LKETEIKDFTLNFGPQHPAAHGVLRLILELNGETIKNADPHIGLLHRGTEKLIENRNYLQ 66
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+ M QEHAY+LAVE+L GI IP R Q IRVL+SEI RIL+HLL + +
Sbjct: 67 ALPYFDRLDYVSMMVQEHAYSLAVERLYGINIPQRAQWIRVLFSEITRILNHLLAIGCHS 126
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGA+TP LWGFEEREKLM FYER SG+RMHA+Y RPGGV QD+P VED+ + F
Sbjct: 127 MDVGAMTPLLWGFEEREKLMEFYERVSGARMHASYIRPGGVAQDLPSGFVEDVYSFILDF 186
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L++I +LLT NRI+KQR VN+G V + A GFSGV++R +G WDLR+SQPYE Y
Sbjct: 187 SVRLDEIEELLTNNRIWKQRLVNVGIVTAKQAIQNGFSGVLLRSTGIPWDLRRSQPYEIY 246
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
++ F IP+G GDCYDRYL+RM EMR+S++I+ C+ L G G + + D K VPP
Sbjct: 247 DKVPFRIPVGTRGDCYDRYLIRMQEMRQSLRIMMACLKYLPG----GSIKSDDKKFVPPL 302
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MK SMES+IHHFK +TEG+ VP G+ YAAVEAPKGE GV+LISDG N+P+RCKI+AP
Sbjct: 303 RWEMKNSMESVIHHFKYFTEGFKVPAGQTYAAVEAPKGEMGVFLISDGSNQPFRCKIKAP 362
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ HLQ + + K H +ADV I+G+ DIVFGEVDR
Sbjct: 363 GFFHLQNLPEMTKHHMIADVVTIIGTQDIVFGEVDR 398
>gi|254670956|emb|CBA07624.1| NADH dehydrogenase I chain D [Neisseria meningitidis alpha153]
Length = 418
Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats.
Identities = 251/417 (60%), Positives = 308/417 (73%), Gaps = 27/417 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K R++TINFGPQHPAAHGVLR+ILELDGE + R DPHIGLLHRGTEKL ETKT+LQA+PY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELDGEQIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDYV+ M E AY LAVEKL GI++PIR Q IRV+++E+ RIL+HL+ + + A D+G
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP----------------- 167
A+T L+ F +RE+LM YE SG+RMHAAYFRPGGV++D+P
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYEGSKFRNAKVLK 183
Query: 168 --------ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
+++ I +C+ FP ++ + LLT NRI+KQR V IG V E A GF+G
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTG 243
Query: 220 VMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR 279
VM+RGSG WD+RK QPYE Y ++DFDIP+G +GDCYDRYL RM EMR+SV+II+QCV+
Sbjct: 244 VMLRGSGVEWDVRKKQPYEVYDKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCVDW 303
Query: 280 LLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGE 339
L + GPV ++ K PPKR +MK ME LIHHFKL+TEG HVP GE Y AVE PKGE
Sbjct: 304 L--RVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGE 361
Query: 340 FGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
FGVY+ISDG NKPYR KIRAPG+AHLQ M+ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 362 FGVYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|254487142|ref|ZP_05100347.1| NADH dehydrogenase (quinone), D subunit [Roseobacter sp. GAI101]
gi|214044011|gb|EEB84649.1| NADH dehydrogenase (quinone), D subunit [Roseobacter sp. GAI101]
Length = 408
Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats.
Identities = 287/395 (72%), Positives = 332/395 (84%), Gaps = 2/395 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++K R+F INFGPQHPAAHGVLRL+LELDGE+VER DPHIGLLHRGTEKL+E++T+LQ +
Sbjct: 15 EQKIRNFNINFGPQHPAAHGVLRLVLELDGEVVERCDPHIGLLHRGTEKLMESRTYLQNL 74
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYVAPMNQEHA+ LA+EKL G+E+P R LIRVLYSEIGRILSHLLNVTTQAMD
Sbjct: 75 PYFDRLDYVAPMNQEHAWCLAIEKLTGVEVPRRASLIRVLYSEIGRILSHLLNVTTQAMD 134
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTPPLWGFEERE LM+FYERA G+R+HAAYFRPGGVHQD+PP L++DI W F S
Sbjct: 135 VGALTPPLWGFEEREDLMIFYERACGARLHAAYFRPGGVHQDLPPALLDDIEAWSHKFMS 194
Query: 183 -ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+ DI LLT NRIFKQRN +IG V +D WGFSGVM+RGSG AWDLR++QPYECY
Sbjct: 195 GFMVDIDKLLTENRIFKQRNADIGIVTEQDIQDWGFSGVMVRGSGLAWDLRRAQPYECYD 254
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
E DF IP G +GDCYDRYLVRM EMR+S+ II+Q + +L G + + KI PP R
Sbjct: 255 EFDFQIPTGVNGDCYDRYLVRMEEMRQSIFIIQQAITKLREPEGQGDIL-ARGKITPPSR 313
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ MK MESLIHHFKLYTEG+HVP GEVY AVEAPKGEFGVYL++DG NKPYR KIRAPG
Sbjct: 314 SAMKTDMESLIHHFKLYTEGFHVPAGEVYCAVEAPKGEFGVYLVADGSNKPYRAKIRAPG 373
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Y HLQAM+++ KGHQLADV+AI+G++DIVFGEVDR
Sbjct: 374 YLHLQAMDYMAKGHQLADVAAIIGTMDIVFGEVDR 408
>gi|254461816|ref|ZP_05075232.1| NADH dehydrogenase (quinone), D subunit [Rhodobacterales bacterium
HTCC2083]
gi|206678405|gb|EDZ42892.1| NADH dehydrogenase (quinone), D subunit [Rhodobacteraceae bacterium
HTCC2083]
Length = 407
Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats.
Identities = 277/394 (70%), Positives = 332/394 (84%), Gaps = 3/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++K R+F INFGPQHPAAHGVLRL+LELDGEIVER DPHIGLLHRGTEKL+E++T+LQ +
Sbjct: 17 EQKIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNL 76
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYVAPMNQEHA+ LA+EKL G+E+P R LIRVLYSEIGR+L+HLLNVTTQA+D
Sbjct: 77 PYFDRLDYVAPMNQEHAWCLAIEKLCGVEVPRRASLIRVLYSEIGRVLNHLLNVTTQALD 136
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTPPLWGFE+RE+LM+FYERA G+R+HAAYFRPGGVHQD+P L++DI W FP
Sbjct: 137 VGALTPPLWGFEQREQLMIFYERACGARLHAAYFRPGGVHQDLPDALLDDIEAWSHEFPK 196
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++D+ LLT NRIFKQRN +IG V ED +GFSGVM+RGSG AWDLR++QPYECY E
Sbjct: 197 FMDDMHGLLTENRIFKQRNADIGVVTEEDILNYGFSGVMVRGSGFAWDLRRAQPYECYDE 256
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+F IP+GK+GDCYDRYL RM EM +SV II+Q + +L + + K+ PPKR
Sbjct: 257 FEFQIPVGKNGDCYDRYLCRMEEMTQSVSIIKQAIAKLREEPGDV---MARGKLTPPKRG 313
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
DMK SME+LIHHFKLYTEG+HVP GEVY AVEAPKGEFGVYL++DG NKPYR KIRAPG+
Sbjct: 314 DMKTSMEALIHHFKLYTEGFHVPAGEVYCAVEAPKGEFGVYLVADGSNKPYRSKIRAPGF 373
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQAM+ + GHQLADV+AI+G++D+VFGE+DR
Sbjct: 374 LHLQAMDHITVGHQLADVAAIIGTMDVVFGEIDR 407
>gi|320147997|emb|CBJ20663.1| NADH dehydrogenase subunit 7 [Beta vulgaris subsp. maritima]
Length = 391
Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats.
Identities = 254/393 (64%), Positives = 317/393 (80%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
++ ++FT+NFGPQHPAAHGVLRL+LE++GE+VER +PHIGLLHRGTEKLIE KT+LQA+P
Sbjct: 3 RQMKNFTLNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQALP 62
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M QEHAY+LAVE+LL E+P+R Q IRVL+ EI RIL+HLL +TT AMDV
Sbjct: 63 YFDRLDYVSMMAQEHAYSLAVERLLNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMDV 122
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP LW FEEREKL+ FYER SG+RMHA++ RPGGV QD+P L DI + F S
Sbjct: 123 GALTPFLWAFEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCRDIDSFTQQFASR 182
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
++++ ++LTGNRI+KQR V+IGTV + A WGFSGVM+RGSG WDLR++ PY+ Y +L
Sbjct: 183 IDELEEMLTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGSGVCWDLRRAAPYDVYDQL 242
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DFD+P+G GDCYDRY +R+ EMR+SV+II QC+N++ G + A D K+ PP R
Sbjct: 243 DFDVPVGTRGDCYDRYCIRIEEMRQSVRIIVQCLNQM----PSGMIKADDRKLCPPSRYR 298
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK SMESLIHHF+LYTEG+ VP Y AVEAPKGEFGV+L+S+G N+PYRCKIRAPG+A
Sbjct: 299 MKLSMESLIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFA 358
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ ++F+ K H LADV I+G+ DIVFGEVDR
Sbjct: 359 HLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 391
>gi|296136703|ref|YP_003643945.1| NADH dehydrogenase I, D subunit [Thiomonas intermedia K12]
gi|295796825|gb|ADG31615.1| NADH dehydrogenase I, D subunit [Thiomonas intermedia K12]
Length = 417
Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats.
Identities = 237/418 (56%), Positives = 305/418 (72%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+++T+NFGPQHPAAHGVLRL+LELDGE+V+R DPHIGLLHR TEKL E KT++QA+P
Sbjct: 2 ADIKNYTLNFGPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRATEKLAEHKTYIQALP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY LA+EKLLG+E+P+RGQ IRV+++EI R+L+HL+ + +D
Sbjct: 62 YMDRLDYVSMMCNEHAYCLAIEKLLGVEVPLRGQYIRVMFAEITRLLNHLMWLGAHGLDC 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+T L+ F ERE L YE SG+RMHAAYFRPGGV++D+P +
Sbjct: 122 GAMTVFLYAFREREDLFDMYEAVSGARMHAAYFRPGGVYRDLPDRMAQYGESKIRNARAV 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP+ +++ LLT NRI+KQR V IG V E A G +
Sbjct: 182 EARNAGRQGSLLDFIDDFTQRFPAYVDEYETLLTDNRIWKQRTVGIGVVSPERAMNLGMT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG WDLRK+QPY+ Y +DFDIP+GK+GDCYDRYLVRM EMR+S +II+QCV+
Sbjct: 242 GPMLRGSGVVWDLRKTQPYDVYDRMDFDIPVGKNGDCYDRYLVRMEEMRQSNRIIKQCVD 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ P R +MK SME+LIHHFKL++EG VP G+ YAAVE PKG
Sbjct: 302 WL--RANPGPVITDNHKVAAPAREEMKTSMEALIHHFKLFSEGMRVPEGQAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YL+SDG NKPYR KIRAPG+AHL A++ + +GH +ADV AI+G+LDIVFGE+DR
Sbjct: 360 EFGIYLVSDGANKPYRLKIRAPGFAHLAALDEMSRGHMIADVVAIIGTLDIVFGEIDR 417
>gi|331217620|ref|XP_003321488.1| NADH-ubiquinone oxidoreductase subunit [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309300478|gb|EFP77069.1| NADH-ubiquinone oxidoreductase subunit [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 482
Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats.
Identities = 239/390 (61%), Positives = 306/390 (78%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
R FT+NFGPQHPAAHGVLR+ILE++GE + R DPHIGLLHRGTEKLIE K + QA+PYFD
Sbjct: 97 RHFTVNFGPQHPAAHGVLRMILEMNGEEILRADPHIGLLHRGTEKLIEYKNYTQALPYFD 156
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYV+ M E Y+ AVEKLL IE+P R + IR ++ EI RIL+HL+ + T AMDVGAL
Sbjct: 157 RLDYVSMMTNELCYSRAVEKLLNIEVPDRAKWIRTMFGEITRILNHLMAILTHAMDVGAL 216
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP LWGFEEREKLM FYER SG+R+HAAY RPGGV D+P L++DI W +F +++
Sbjct: 217 TPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVAFDLPHGLLDDIYIWATAFSDRVDE 276
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
++LT NRI+K+R + IG V + DA +GFSGVM+RGSG WD+RKSQPY+ Y +++FD
Sbjct: 277 FEEVLTENRIWKERTIGIGKVSVNDALNYGFSGVMLRGSGVPWDIRKSQPYDAYDQVEFD 336
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+P+GK+GDCYDRYL R E R+S++II QC+N++ G + D K+ PP RA MK
Sbjct: 337 VPVGKNGDCYDRYLCRTEEFRQSLRIIHQCLNKMPA----GQIKVDDYKLTPPPRATMKE 392
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
SME+LIHHFKL++EGY+VP GE Y+A+EAPKGE GVYL+SDG N+PYRC+IRAPG+AHL
Sbjct: 393 SMEALIHHFKLFSEGYNVPPGETYSAIEAPKGEMGVYLVSDGSNRPYRCRIRAPGFAHLA 452
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+F+ + H L D+ AI+G++D+VFGEVDR
Sbjct: 453 GADFMSRHHFLPDMVAIIGTMDLVFGEVDR 482
>gi|159479042|ref|XP_001697607.1| NADH:ubiquinone oxidoreductase 49 kDa ND7 subunit [Chlamydomonas
reinhardtii]
gi|34328792|gb|AAQ63700.1| NADH:ubiquinone oxidoreductase 49 kD subunit [Chlamydomonas
reinhardtii]
gi|158274217|gb|EDP00001.1| NADH:ubiquinone oxidoreductase 49 kDa ND7 subunit [Chlamydomonas
reinhardtii]
Length = 467
Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats.
Identities = 249/396 (62%), Positives = 313/396 (79%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ K +FT+NFGPQHPAAHGVLRL+LE+ GEI+ R DPHIGLLHRGTEKL+E KT+LQ
Sbjct: 76 LTPAKVNNFTLNFGPQHPAAHGVLRLVLEMQGEIIMRADPHIGLLHRGTEKLLEYKTYLQ 135
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PYFDRLDYV+ M EH+Y LA+E+LL + +P+RGQ IRVL+SEI R+L+HLL +T +
Sbjct: 136 GLPYFDRLDYVSMMCMEHSYVLAIEQLLNVSVPLRGQYIRVLFSEITRVLNHLLAITCHS 195
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTP LW FEEREKL FYER SG+RMHAAYFR GGV QD+P L+ D+ W F
Sbjct: 196 MDVGALTPFLWAFEEREKLFEFYERVSGARMHAAYFRVGGVSQDLPIGLLRDVYDWARQF 255
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
S L+++ +LLTGNRI+K+R V++GT+ + AW WG SG ++R SG WDLRK+QPY+ Y
Sbjct: 256 ASRLDEMEELLTGNRIWKERTVDVGTITAQMAWDWGCSGPILRASGIDWDLRKTQPYDAY 315
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
++ F++PI HGDCYDRYLVR+ EMRES++II QC+N + G + D K+ PP
Sbjct: 316 GKMQFNVPIAGHGDCYDRYLVRLQEMRESLRIIYQCLNEMPD----GLYKSPDGKVCPPS 371
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R+ MK+SME+LIHHFKLYTEG+HVP GE Y AVEAPKGEFGVYL+S GGN+PYRCKIR+P
Sbjct: 372 RSTMKQSMEALIHHFKLYTEGFHVPAGETYRAVEAPKGEFGVYLVSRGGNRPYRCKIRSP 431
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GYAHLQ + + +G LADV I+G+LD+VFGE+DR
Sbjct: 432 GYAHLQMTDVISRGAMLADVVTIIGTLDVVFGEIDR 467
>gi|34496399|ref|NP_900614.1| NADH dehydrogenase subunit D [Chromobacterium violaceum ATCC 12472]
gi|81656634|sp|Q7NZH8|NUOD_CHRVO RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|34102252|gb|AAQ58618.1| NADH-ubiquinone oxidoreductase, chain D [Chromobacterium violaceum
ATCC 12472]
Length = 417
Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats.
Identities = 242/418 (57%), Positives = 306/418 (73%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ R++T+NFGPQHPAAHGVLRL+LELDGE+V+R DPHIGLLHRGTEKL E+KTF+Q++P
Sbjct: 2 AEIRNYTLNFGPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRGTEKLAESKTFIQSLP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY LA+EK++GIE+P R Q IRV+++EI RIL+HLL + A+D+
Sbjct: 62 YMDRLDYVSMMCNEHAYCLAIEKMMGIEVPERAQYIRVMFAEITRILNHLLWIGAHALDI 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP---------------- 167
GA+T L+ F ERE LM YE SG+RMHAAYFRPGGV++D+P
Sbjct: 122 GAMTMFLYAFREREDLMDCYEAVSGARMHAAYFRPGGVYRDLPDSMPQYTVSKIKNAKEL 181
Query: 168 ---------ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
+++ I + FP+ +++ LLT NRI+KQR V IG V E A G +
Sbjct: 182 ARLNEGRKGSMLDFIEDFTKRFPTYVDEYETLLTDNRIWKQRTVGIGVVTPERALNLGMT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG AWDLRK+QPY+ Y ++DFD+P+G GDCYDRYLVR+ EMR+S +II+QCV
Sbjct: 242 GPMLRGSGIAWDLRKTQPYDVYDKMDFDVPVGVGGDCYDRYLVRVEEMRQSNRIIQQCVA 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ PP R MK +ME LIHHFKL+TEG HVP GE YAAVE PKG
Sbjct: 302 WL--RANPGPVITDNHKVAPPSREGMKSNMEDLIHHFKLFTEGMHVPEGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YL+SDG NKPYR KIRAPGYAHL A++ + GH +ADV AI+G+ DIVFGE+DR
Sbjct: 360 EFGIYLVSDGANKPYRLKIRAPGYAHLAALDEMATGHMIADVVAIIGTQDIVFGEIDR 417
>gi|121604333|ref|YP_981662.1| NADH dehydrogenase subunit D [Polaromonas naphthalenivorans CJ2]
gi|229891294|sp|A1VM63|NUOD_POLNA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|120593302|gb|ABM36741.1| NADH dehydrogenase subunit D [Polaromonas naphthalenivorans CJ2]
Length = 417
Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats.
Identities = 233/418 (55%), Positives = 307/418 (73%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E+KT++Q++P
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESKTYIQSLP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M+ EHAY LA+EKLLG+++PIR Q IRV++SEI R+L+HL+ + +D
Sbjct: 62 YMDRLDYVSMMSNEHAYCLAIEKLLGVDVPIRAQYIRVMFSEITRLLNHLMWLGAHGLDC 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ ++ F ERE L YE SG+RMHAAYFRPGGV++D+P +
Sbjct: 122 GAMNMLIYCFREREVLFDMYEAVSGARMHAAYFRPGGVYRDLPESMSQYKVNKIRNAKAI 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP +++ LLT NRI+KQR V +G V E A GF+
Sbjct: 182 DALNENRQGSLLDFIDDFVTKFPKLVDEYETLLTDNRIWKQRTVGVGVVSPERALNLGFT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG AWDLRK QPYE Y+++DFDIP+GK GDCYDRYLVR+ EMR+S +II+QCV+
Sbjct: 242 GPMLRGSGFAWDLRKQQPYEVYAQMDFDIPVGKTGDCYDRYLVRVAEMRQSNRIIKQCVD 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV S+ K+ PP R MK +ME LIHHFKL+TEG+HVP GE YAAVE PKG
Sbjct: 302 WL--RVNSGPVITSNHKVAPPNRESMKSNMEELIHHFKLFTEGFHVPEGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+Y++SDG NKPYR KIR PG++HL AM+ + +GH +AD A++G++DIVFGE+DR
Sbjct: 360 EFGIYIVSDGANKPYRLKIRPPGFSHLAAMDEMSRGHMIADAVAVIGTMDIVFGEIDR 417
>gi|9695385|ref|NP_037607.1| NADH dehydrogenase subunit 7 [Phytophthora infestans]
gi|6692638|gb|AAF24781.1|U17009_13 NADH dehydrogenase subunit 7 [Phytophthora infestans]
gi|58012143|gb|AAW62551.1| NADH dehydrogenase subunit 7 [Phytophthora infestans]
gi|58201982|gb|AAW67037.1| NADH dehydrogenase subunit 7 [Phytophthora infestans]
gi|58202029|gb|AAW67083.1| NADH dehydrogenase subunit 7 [Phytophthora infestans]
Length = 392
Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats.
Identities = 256/396 (64%), Positives = 317/396 (80%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M KK ++F+INFGPQHPAAHGVLRLILEL+GE+V++ D HIGLLHRGTEKLIE K +LQ
Sbjct: 1 MSLKKIKNFSINFGPQHPAAHGVLRLILELNGEVVQKADSHIGLLHRGTEKLIEYKNYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+ M QEHAY LA+EKLL +IP+R Q IRVL+SEI RIL+HLL V A
Sbjct: 61 ALPYFDRLDYVSMMCQEHAYVLAIEKLLNCDIPLRAQYIRVLFSEITRILNHLLAVCCHA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+DVGA+TP WGFEEREKLM FYER SG+RMHAAYFRPGGV+QD+P L+ DI +CD F
Sbjct: 121 LDVGAMTPYFWGFEEREKLMEFYERVSGARMHAAYFRPGGVNQDLPKGLLNDIYIFCDQF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ L++I ++LT NRI+KQR V+IG V +DA GFSGVM+RGSG +WDLRK+QPYE Y
Sbjct: 181 NTRLDEIEEMLTNNRIWKQRLVDIGIVSAKDALNLGFSGVMLRGSGISWDLRKTQPYEIY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+LDFDIP+G +GDCYDRYL+R+ EMR+S++II Q +N++ GP+ D KI P
Sbjct: 241 DQLDFDIPVGTNGDCYDRYLIRIEEMRQSIRIILQILNKIPN----GPIKLDDKKITNPN 296
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +K SMESLIHHFK Y+E + GE Y +EAPKGE+GVYL+SDG NKPYRCKI++P
Sbjct: 297 RIQIKNSMESLIHHFKYYSENISINSGETYTVIEAPKGEYGVYLVSDGTNKPYRCKIKSP 356
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ HLQA++FL K H +ADV I+G+LD+VFGE+DR
Sbjct: 357 GFLHLQALDFLAKNHMIADVVTIIGTLDVVFGEIDR 392
>gi|90086245|dbj|BAE91675.1| unnamed protein product [Macaca fascicularis]
Length = 395
Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats.
Identities = 248/399 (62%), Positives = 313/399 (78%), Gaps = 7/399 (1%)
Query: 1 MDKKKS---RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT 57
MD K ++ T+NFGPQHPAAHGVLRL++EL GE+V + DPHIGLLHRGTEKLIE KT
Sbjct: 1 MDPPKDTMVKNMTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKT 60
Query: 58 FLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVT 117
+LQA+PYFDRLDYV+ M E AY+LAVEKLL I P R Q IRVL+ EI R+L+H++ VT
Sbjct: 61 YLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVT 120
Query: 118 TQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWC 177
T A+D+GA+TP W FEEREK+ FYER SG+RMHAAY RPGGVHQD+P L++DI +
Sbjct: 121 THALDLGAMTPLFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYEFS 180
Query: 178 DSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPY 237
+F L+++ ++LT NRI++ R ++IG V E+A +GFSGVM+RGSG WDLRK+QPY
Sbjct: 181 KNFSLRLDELEEMLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPY 240
Query: 238 ECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIV 297
+ Y ++DFD+P+G GDCYDRYL R+ EMR+S++II QC+N++ G + D K+
Sbjct: 241 DVYDQVDFDVPVGSRGDCYDRYLCRVEEMRQSLRIIVQCLNKM----PPGEIKVDDAKVS 296
Query: 298 PPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKI 357
PPKRA+MK SMESLIHHFKLYTEGY VP G Y A+EAPKGEFGVYL+SDG ++PYRCKI
Sbjct: 297 PPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKI 356
Query: 358 RAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+APG+A L ++ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 357 KAPGFAPLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 395
>gi|268164110|ref|YP_003288887.1| NADH dehydrogenase subunit 7 [Saccharina coriacea]
gi|262318420|dbj|BAI48739.1| NADH dehydrogenase subunit 7 [Saccharina coriacea]
Length = 398
Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats.
Identities = 258/388 (66%), Positives = 308/388 (79%), Gaps = 4/388 (1%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
FTINFGPQHPAAHGVLRLILEL+GE+V+R DPHIGLLHRGTEKLIE KT+ QA+PYFDRL
Sbjct: 15 FTINFGPQHPAAHGVLRLILELNGEVVQRADPHIGLLHRGTEKLIEAKTYFQALPYFDRL 74
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
DYV+ M QEH YALAVE LL I +P R Q IRVL++EI RIL+HLL V AMDVGA+TP
Sbjct: 75 DYVSMMCQEHTYALAVENLLQISVPKRAQYIRVLFAEITRILNHLLAVGCHAMDVGAMTP 134
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
LW FEEREKLM FYER SG+RMHA+YFRPGGV QD+ L++DI + F L++I
Sbjct: 135 FLWAFEEREKLMEFYERVSGARMHASYFRPGGVSQDLTIGLIDDIFSFAAQFGQRLDEIE 194
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
++LT NRI+++R V+IG V ++A WGFSGVM+RGSG WDLRK++PY+ YSEL F
Sbjct: 195 EMLTDNRIWQERLVDIGVVNAQEAIDWGFSGVMLRGSGIRWDLRKNEPYDAYSELSFQGV 254
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
+GK GDCYDRYLVR+ EMR+S+ II QC+N++ G V D KI PP RAD+K+SM
Sbjct: 255 VGKTGDCYDRYLVRVEEMRQSLSIIYQCLNKM----PEGSVKVDDSKITPPSRADVKQSM 310
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
E+LIHHFKLYTEG VP GE Y A EAPKGEFGVYL+SDG N+PYRCKI+APG++HLQA+
Sbjct: 311 EALIHHFKLYTEGVTVPSGETYIATEAPKGEFGVYLVSDGSNRPYRCKIKAPGFSHLQAL 370
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVDR 396
F+ H LADV I+G+ DIVFGEVDR
Sbjct: 371 NFMANSHMLADVVTIIGTQDIVFGEVDR 398
>gi|268053566|ref|YP_003288925.1| NADH dehydrogenase subunit 7 [Saccharina japonica]
gi|268053605|ref|YP_003288963.1| NADH dehydrogenase subunit 7 [Saccharina religiosa]
gi|268053644|ref|YP_003289001.1| NADH dehydrogenase subunit 7 [Saccharina ochotensis]
gi|268053683|ref|YP_003289078.1| NADH dehydrogenase subunit 7 [Saccharina diabolica]
gi|268053722|ref|YP_003289129.1| NADH dehydrogenase subunit 7 [Saccharina longipedalis]
gi|262318186|dbj|BAI48511.1| NADH dehydrogenase subunit 7 [Saccharina japonica]
gi|262318225|dbj|BAI48549.1| NADH dehydrogenase subunit 7 [Saccharina religiosa]
gi|262318264|dbj|BAI48587.1| NADH dehydrogenase subunit 7 [Saccharina ochotensis]
gi|262318303|dbj|BAI48625.1| NADH dehydrogenase subunit 7 [Saccharina diabolica]
gi|262318342|dbj|BAI48663.1| NADH dehydrogenase subunit 7 [Saccharina longipedalis]
Length = 398
Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats.
Identities = 259/388 (66%), Positives = 308/388 (79%), Gaps = 4/388 (1%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
FTINFGPQHPAAHGVLRLILEL+GE+V+R DPHIGLLHRGTEKLIE KT+ QA+PYFDRL
Sbjct: 15 FTINFGPQHPAAHGVLRLILELNGEVVQRADPHIGLLHRGTEKLIEAKTYFQALPYFDRL 74
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
DYV+ M QEH YALAVE LL I +P R Q IRVL++EI RIL+HLL V AMDVGA+TP
Sbjct: 75 DYVSMMCQEHTYALAVENLLQISVPKRAQYIRVLFAEITRILNHLLAVGCHAMDVGAMTP 134
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
LW FEEREKLM FYER SG+RMHA+YFRPGGV QDI L++DI + F L++I
Sbjct: 135 FLWAFEEREKLMEFYERVSGARMHASYFRPGGVSQDITIGLIDDIFSFAAQFGQRLDEIE 194
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
++LT NRI+++R V+IG V ++A WGFSGVM+RGSG WDLRK++PY+ YSEL F
Sbjct: 195 EMLTDNRIWQERLVDIGVVNAQEAIDWGFSGVMLRGSGIRWDLRKNEPYDAYSELSFQGV 254
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
+GK GDCYDRYLVR+ EMR+S+ II QC+N++ G V D KI PP RAD+K+SM
Sbjct: 255 VGKTGDCYDRYLVRVEEMRQSLSIIYQCLNKM----PKGSVKVDDSKITPPSRADVKQSM 310
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
E+LIHHFKLYTEG VP GE Y A EAPKGEFGVYL+SDG N+PYRCKI+APG++HLQA+
Sbjct: 311 EALIHHFKLYTEGVTVPSGETYIATEAPKGEFGVYLVSDGSNRPYRCKIKAPGFSHLQAL 370
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVDR 396
F+ H LADV I+G+ DIVFGEVDR
Sbjct: 371 NFMANSHMLADVVTIIGTQDIVFGEVDR 398
>gi|255067284|ref|ZP_05319139.1| NADH dehydrogenase, D subunit [Neisseria sicca ATCC 29256]
gi|255048435|gb|EET43899.1| NADH dehydrogenase, D subunit [Neisseria sicca ATCC 29256]
Length = 418
Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats.
Identities = 249/417 (59%), Positives = 307/417 (73%), Gaps = 27/417 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K R++TINFGPQHPAAHGVLR+ILEL+GE + R DPHIGLLHRGTEKL ETKT+LQA+PY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELEGETIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDYV+ M E AY LAVEKL GI++PIR Q IRV+++E+ RIL+HL+ + + A D+G
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP----------------- 167
A+T L+ F +RE+LM YE SG+RMHAAYFRPGGV++D+P
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKFRNAKVLK 183
Query: 168 --------ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
+++ I +C+ FP ++ + LLT NRI+KQR V IG V E A GF+G
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTG 243
Query: 220 VMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR 279
VM+RGSG WD+RK QPYE Y ++DFDIP+G +GDCYDRYL RM EMR+SV+II+QC +
Sbjct: 244 VMLRGSGVEWDVRKKQPYEVYDQMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCADW 303
Query: 280 LLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGE 339
L + GPV ++ K PPKR +MK ME LIHHFKL+TEG HVP GE Y AVE PKGE
Sbjct: 304 L--RVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGE 361
Query: 340 FGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
FGVY+ISDG NKPYR KIRAPG+AHLQ M+ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 362 FGVYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|302511157|ref|XP_003017530.1| hypothetical protein ARB_04412 [Arthroderma benhamiae CBS 112371]
gi|291181101|gb|EFE36885.1| hypothetical protein ARB_04412 [Arthroderma benhamiae CBS 112371]
Length = 493
Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats.
Identities = 245/413 (59%), Positives = 306/413 (74%), Gaps = 24/413 (5%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+K R +T+NFGPQHPAAHGVLRLILEL+GE + R DPH+GLLHRGTEKLIE KT++QA+P
Sbjct: 85 RKIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYMQALP 144
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M E ++LAVEKLL IEIP R + IR ++ EI RIL+HL++V + AMDV
Sbjct: 145 YFDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKWIRTMFGEITRILNHLMSVLSHAMDV 204
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP LWGFEEREKLM FYER SG+R+HAAY RPGGVHQDIP L++DI W F
Sbjct: 205 GALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPLGLLDDIYQWATQFADR 264
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ +LLT NRI+K R V +G V +A +GFSGVM+RGSG WD+RKSQPY+ Y ++
Sbjct: 265 IDETEELLTDNRIWKARTVGVGVVTAAEALNYGFSGVMLRGSGVPWDIRKSQPYDAYGQV 324
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FD+P+G +GDCYDRYL RM E R+S++II QC+N + GPV D KI PP R
Sbjct: 325 EFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNNMPA----GPVRVEDYKISPPPRIA 380
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK +ME+LIHHF L+T+GY VP GE Y+A+EAPKGE V+L+SDG +PYRCKIRAPG+A
Sbjct: 381 MKENMEALIHHFLLFTKGYTVPPGETYSAIEAPKGEMAVFLVSDGSERPYRCKIRAPGFA 440
Query: 364 HLQAMEFLCKGHQLADVSAIL--------------------GSLDIVFGEVDR 396
HL + L +GH LAD AI+ G++D+VFGEVDR
Sbjct: 441 HLGCFDQLSRGHLLADAVAIIGTHVSSKCDNEIQTNVCFFAGTMDLVFGEVDR 493
>gi|15604222|ref|NP_220738.1| NADH dehydrogenase subunit D [Rickettsia prowazekii str. Madrid E]
gi|6647680|sp|Q9ZDH4|NUOD_RICPR RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|3860914|emb|CAA14814.1| NADH DEHYDROGENASE I CHAIN D (nuoD) [Rickettsia prowazekii]
gi|292571963|gb|ADE29878.1| NADH dehydrogenase I chain D [Rickettsia prowazekii Rp22]
Length = 389
Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats.
Identities = 260/390 (66%), Positives = 315/390 (80%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
++ T+N GPQHPA HGVLRLILE+DGE+V DPHIGLLHRGTEKLIE KT+LQA+PYFD
Sbjct: 4 KTITLNLGPQHPATHGVLRLILEMDGEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFD 63
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYV+PM QEHA+ALAVE LL +P R Q IRVL+SE+ RIL+H LN+ +QA+D+GA
Sbjct: 64 RLDYVSPMCQEHAFALAVESLLECSVPRRAQFIRVLFSELTRILNHTLNIGSQALDIGAT 123
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP LW FEEREK+M FYER SGSRMH+ YFRPGGV +D+P L+EDI + + FPS LND
Sbjct: 124 TPLLWLFEEREKIMEFYERVSGSRMHSNYFRPGGVAEDLPENLLEDINKFIEQFPSKLND 183
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
I +LL NR++KQR V+IG V +DA WGFSG M+RGSG AWDLRKS PY+ Y E+DF+
Sbjct: 184 IENLLNENRLWKQRLVDIGVVSQKDAMDWGFSGPMLRGSGIAWDLRKSNPYDVYDEMDFE 243
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+PIGK+GDCYDRYLVR++EM ES+KII+QC+ ++ G V DPK+ PP R MK
Sbjct: 244 VPIGKNGDCYDRYLVRILEMYESIKIIKQCIVKM----PKGQVKTDDPKLTPPTRGKMKE 299
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
SME++IHHFKLYTEGY VP+GE Y AVEAPKGEFGVYL S GGNKPYRC+I+APG+AHLQ
Sbjct: 300 SMEAMIHHFKLYTEGYDVPIGETYKAVEAPKGEFGVYLYSQGGNKPYRCRIKAPGFAHLQ 359
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ F+ KGH +ADV I+ +LDIVFGE+DR
Sbjct: 360 GLNFMSKGHLIADVITIIATLDIVFGEIDR 389
>gi|94968341|ref|YP_590389.1| NADH dehydrogenase I, D subunit [Candidatus Koribacter versatilis
Ellin345]
gi|218534376|sp|Q1IS35|NUOD2_ACIBL RecName: Full=NADH-quinone oxidoreductase subunit D 2; AltName:
Full=NADH dehydrogenase I subunit D 2; AltName:
Full=NDH-1 subunit D 2
gi|94550391|gb|ABF40315.1| NADH dehydrogenase subunit D [Candidatus Koribacter versatilis
Ellin345]
Length = 401
Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats.
Identities = 188/396 (47%), Positives = 258/396 (65%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
++ + ++ +N GPQHP+ HGVLRL+LE+DGE + R+ P IG LH G EK E K + Q
Sbjct: 10 LEAGQDKTMVLNMGPQHPSTHGVLRLLLEIDGETIVRIMPDIGYLHTGIEKTCEAKFYQQ 69
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
VP DR+DY+ PM AY LAVEKLLG+EIP R Q IRVL +E+ RI SHL+ + T A
Sbjct: 70 VVPMTDRIDYLCPMTNNLAYVLAVEKLLGLEIPERAQWIRVLCNELTRINSHLVWLGTGA 129
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MD+GA+T L+ F ERE+L+ +E +G RM +YFR GGV + P + + + D+F
Sbjct: 130 MDLGAMTVFLYCFREREELLKLFEAVAGQRMMTSYFRVGGVSLEPPLGWFDRVKKFADTF 189
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
PS +++ LLT N IF R + + EDA G SG +RGSG +DLR+ PY Y
Sbjct: 190 PSKMDEYEGLLTQNPIFVMRTKGVAKITKEDALALGASGPTLRGSGIDFDLRRDMPYSGY 249
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+ F++P+ GD Y RY R+ E+RES KI++Q + + G + A PK+V P
Sbjct: 250 DKFKFNVPVKTEGDVYARYQCRIAELRESCKIVQQALAGM----PEGSIKADAPKVVLPD 305
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R MK MESLI+HFK+ TEG+ VP GEVY+A+E+P+GE G Y++SDG KPYR +R+P
Sbjct: 306 REKMKTQMESLIYHFKIVTEGFTVPPGEVYSAIESPRGEMGYYIVSDGTAKPYRVHMRSP 365
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+A+LQ + +C G LADV A +GS+DIV G+ DR
Sbjct: 366 SFANLQMLPSMCTGQLLADVVAAIGSIDIVLGDCDR 401
>gi|268164071|ref|YP_003288836.1| NADH dehydrogenase subunit 7 [Saccharina angustata]
gi|262318381|dbj|BAI48701.1| NADH dehydrogenase subunit 7 [Saccharina angustata]
Length = 398
Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats.
Identities = 259/388 (66%), Positives = 308/388 (79%), Gaps = 4/388 (1%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
FTINFGPQHPAAHGVLRLILEL+GE+V+R DPHIGLLHRGTEKLIE KT+ QA+PYFDRL
Sbjct: 15 FTINFGPQHPAAHGVLRLILELNGEVVQRADPHIGLLHRGTEKLIEAKTYFQALPYFDRL 74
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
DYV+ M QEH YALAVE LL I +P R Q IRVL++EI RIL+HLL V AMDVGA+TP
Sbjct: 75 DYVSMMCQEHTYALAVENLLQISVPKRAQYIRVLFAEITRILNHLLAVGCHAMDVGAMTP 134
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
LW FEEREKLM FYER SG+RMHA+YFRPGGV QDI L++DI + F L++I
Sbjct: 135 FLWAFEEREKLMEFYERVSGARMHASYFRPGGVSQDITIGLIDDIFSFAAQFGQRLDEIE 194
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
++LT NRI+++R V+IG V ++A WGFSGVM+RGSG WDLRK++PY+ YSEL F
Sbjct: 195 EMLTDNRIWQERLVDIGVVNAQEAIDWGFSGVMLRGSGIRWDLRKNEPYDAYSELSFQGV 254
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
+GK GDCYDRYLVR+ EMR+S+ II QC+N++ G V D KI PP RAD+K+SM
Sbjct: 255 VGKTGDCYDRYLVRVEEMRQSLSIIYQCLNKM----PEGSVKVDDSKITPPSRADVKQSM 310
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
E+LIHHFKLYTEG VP GE Y A EAPKGEFGVYL+SDG N+PYRCKI+APG++HLQA+
Sbjct: 311 EALIHHFKLYTEGVTVPSGETYIATEAPKGEFGVYLVSDGSNRPYRCKIKAPGFSHLQAL 370
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVDR 396
F+ H LADV I+G+ DIVFGEVDR
Sbjct: 371 NFMANSHMLADVVTIIGTQDIVFGEVDR 398
>gi|833783|emb|CAA32523.1| NADH:ubiquinone oxidoreductase (428 AA) [Bos taurus]
Length = 428
Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats.
Identities = 247/389 (63%), Positives = 310/389 (79%), Gaps = 4/389 (1%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
+ T+NFGPQHPAAHGVLRL++EL GE+V + DPHIGLLHRGTEKLIE KT+LQA+PYFDR
Sbjct: 44 NLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDR 103
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
LDYV+ M E AY+LAVEKLL I P R Q IRVL+ EI R+L+H++ VTT A+D+GA+T
Sbjct: 104 LDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDIGAMT 163
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
P W FEEREK+ FYER SG+RMHAAY RPGGVHQD+P L++DI + +F ++++
Sbjct: 164 PFFWMFEEREKMFEFYERVSGARMHAAYVRPGGVHQDLPLGLMDDIYEFSKNFSLRIDEL 223
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
++LT NRI++ R V+IG V EDA +GFSGVM+RGSG WDLRK+QPY+ Y +++FD+
Sbjct: 224 EEMLTNNRIWRNRTVDIGIVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDV 283
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
PIG GDCYDRYL R+ EMR+S++II QC+N++ G + D K+ PPKRA+MK S
Sbjct: 284 PIGSRGDCYDRYLCRVEEMRQSIRIISQCLNKM----PPGEIKVDDAKVSPPKRAEMKTS 339
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
MESLIHHFKLYTEGY VP G Y A+EAPKGEFGVYL+SDG ++PYRCKI+APG+AHL
Sbjct: 340 MESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAG 399
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 400 LDKMSKGHMLADVVAIIGTQDIVFGEVDR 428
>gi|84508628|ref|YP_448675.1| NADH dehydrogenase subunit 7 [Desmarestia viridis]
gi|45925660|gb|AAS79061.1| NADH dehydrogenase subunit 7 [Desmarestia viridis]
Length = 398
Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats.
Identities = 257/393 (65%), Positives = 309/393 (78%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
KK + FTINFGPQHPAAHGVLRLILEL+GE+V+R DPHIGLLHRGTEKLIE KT+ QA+P
Sbjct: 10 KKLQHFTINFGPQHPAAHGVLRLILELNGEVVQRADPHIGLLHRGTEKLIEAKTYFQALP 69
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M QEH YALAVE LL + IP R Q IRVL++EI RIL+HLL V AMDV
Sbjct: 70 YFDRLDYVSMMCQEHTYALAVENLLQVSIPKRAQYIRVLFAEITRILNHLLAVGCHAMDV 129
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+TP LW FEEREKLM FYER SG+RMHA+YFRPGGV QDI L++DI + F
Sbjct: 130 GAMTPFLWAFEEREKLMEFYERVSGARMHASYFRPGGVSQDISIGLIDDIYSFAVQFGQR 189
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L+++ ++LT NRI+++R V+IG V ++A WGFSGVM+RGSG WDLRK++PYE YS+L
Sbjct: 190 LDEMEEMLTENRIWQERLVDIGVVTAQEAIDWGFSGVMLRGSGVRWDLRKNEPYEVYSDL 249
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
F +GK GDCYDRYLVR+ EMR+S+ +I QC+N++ G V D KI PP R +
Sbjct: 250 KFCEVVGKTGDCYDRYLVRVEEMRQSLSLIHQCLNKM----PQGSVKIDDAKISPPSRTE 305
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+K+SMESLIHHFKLYTEG VP GE Y A EAPKGEFGV+L+SDG N+PYRCKI+APG+A
Sbjct: 306 VKQSMESLIHHFKLYTEGVLVPAGETYTATEAPKGEFGVFLVSDGSNRPYRCKIKAPGFA 365
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ + F+ H LADV I+G+ DIVFGEVDR
Sbjct: 366 HLQGLNFMANSHMLADVVTIIGTQDIVFGEVDR 398
>gi|325130972|gb|EGC53699.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
OX99.30304]
Length = 418
Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats.
Identities = 250/417 (59%), Positives = 307/417 (73%), Gaps = 27/417 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K R++TINFGPQHPAAHGVLR+ILELDGE + R DPHIGLLHRGTEKL ETKT+LQA+PY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELDGETIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDYV+ M E AY LAVEKL GI++PIR Q IRV+++E+ RIL+HL+ + + A D+G
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP----------------- 167
A+T L+ F +RE+LM YE SG+RMHAAYFRPGGV++D+P
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKFRNAKVLK 183
Query: 168 --------ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
+++ I +C+ FP ++ + LLT NRI+KQR V IG V E A GF+G
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTG 243
Query: 220 VMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR 279
VM+RGSG WD+RK+QPYE Y ++DFDIP+G +GDCYDRYL RM EMR+SV+II+QC
Sbjct: 244 VMLRGSGVEWDVRKTQPYEVYDKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCSEW 303
Query: 280 LLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGE 339
L + GPV ++ K PPKR +MK ME LIHHFKL+TEG HVP GE Y AVE PKGE
Sbjct: 304 L--RVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGE 361
Query: 340 FGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
FGVY+ISDG NKPYR KIRAPG+AHLQ M+ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 362 FGVYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|145932347|ref|YP_001165395.1| NADH dehydrogenase subunit 7 [Phytophthora sojae]
gi|110169590|gb|ABG54056.1| NADH dehydrogenase subunit 7 [Phytophthora sojae]
Length = 392
Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats.
Identities = 254/396 (64%), Positives = 317/396 (80%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M KK ++F+INFGPQHPAAHGVLRLILEL+GE+V++ D HIGLLHRGTEKLIE K +LQ
Sbjct: 1 MPLKKIKNFSINFGPQHPAAHGVLRLILELNGEVVQKADSHIGLLHRGTEKLIEYKNYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+ M QEHAY LAVEKLL +IP+R Q IRVL+SEI RIL+HLL V A
Sbjct: 61 ALPYFDRLDYVSMMCQEHAYVLAVEKLLNCDIPLRAQYIRVLFSEITRILNHLLAVCCHA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+DVGA+TP WGFEEREKLM FYER SG+RMHAAYFRPGGV+QD+P L+ DI +CD F
Sbjct: 121 LDVGAMTPYFWGFEEREKLMEFYERVSGARMHAAYFRPGGVNQDLPKGLLNDIYIFCDQF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ L++I ++LT NRI+KQR V+IG V +DA GFSGVM+RGSG +WDLRK+QPYE Y
Sbjct: 181 NTRLDEIEEMLTNNRIWKQRLVDIGVVSAKDALNLGFSGVMLRGSGISWDLRKTQPYEIY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+L+FD+P+G +GDCYDRYL+R+ EMR+S++II Q +N++ GP+ D KI P
Sbjct: 241 DQLEFDVPVGTNGDCYDRYLIRIEEMRQSIRIILQVLNKIPN----GPIKLDDKKITNPN 296
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +K SMESLIHHFK Y+E V GE Y +EAPKGE+GVYL+SDG NKPYRCKI++P
Sbjct: 297 RTQIKNSMESLIHHFKYYSENISVNSGETYTVIEAPKGEYGVYLVSDGTNKPYRCKIKSP 356
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ HLQA++F+ + H +ADV I+G+LD+VFGE+DR
Sbjct: 357 GFLHLQALDFIAQNHMIADVVTIIGTLDVVFGEIDR 392
>gi|44889037|sp|P93306|NDUS2_ARATH RecName: Full=NADH-ubiquinone oxidoreductase 49 kDa subunit;
AltName: Full=NADH dehydrogenase subunit 7
Length = 394
Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats.
Identities = 252/394 (63%), Positives = 315/394 (79%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K++ ++FT+NFGPQHPAAHGVLRL+LE++GE+VER +PHIGLLHRGTEKLIE KT+LQA+
Sbjct: 5 KRQIKNFTLNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQAL 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDR DYV+ M QEHAY+LAVEKLL E+P+R Q IRVL+ EI RIL+HLL +TT AMD
Sbjct: 65 PYFDRSDYVSMMAQEHAYSLAVEKLLNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTP LW FEEREKL+ FYER SG+RMHA++ RPGGV QD+P L DI + F S
Sbjct: 125 VGALTPFLWAFEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCRDIDSFTQQFAS 184
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++++ ++LTGNRI+KQR V+IGTV + A WGFSGVM+RG G WDLR++ PY+ Y +
Sbjct: 185 RIDELEEMLTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGPGVCWDLRRAAPYDVYDQ 244
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LDFD+P+G GDCYDRY +R+ EMR+S++II QC+N++ G + A D K+ PP R
Sbjct: 245 LDFDVPVGTRGDCYDRYCIRIEEMRQSLRIIVQCLNQM----PSGMIKADDRKLCPPSRC 300
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
MK SMES IHHF+LYTEG+ VP Y AVEAPKGEFGV+L+S+G N+PYRCKIRAPG+
Sbjct: 301 RMKLSMESSIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGF 360
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ ++F+ K H LADV I+G+ DIVFGEVDR
Sbjct: 361 AHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 394
>gi|307183938|gb|EFN70526.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial [Camponotus floridanus]
Length = 470
Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats.
Identities = 244/396 (61%), Positives = 310/396 (78%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ ++ + INFGPQHPAAHGVLRLILELDGEIV DPHIGLLHRGTEKLIE KT++Q
Sbjct: 79 VAQQTIENIKINFGPQHPAAHGVLRLILELDGEIVVSADPHIGLLHRGTEKLIEYKTYMQ 138
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+ M E ++LA+EKLL I++P+R + IRVL++EI RIL+H++ + T A
Sbjct: 139 ALPYFDRLDYVSMMCNEQCFSLAIEKLLNIDVPLRAKYIRVLFAEITRILNHIMGIGTHA 198
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+D+GALTP W FEEREKLM FYER SG+RMHAAY RPGGV D+P L++DI W +
Sbjct: 199 LDIGALTPFFWMFEEREKLMEFYERVSGARMHAAYIRPGGVSLDLPLGLMDDIYNWASKY 258
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+++I DLLT NRI++QR ++IG V EDA WGFSGVM+RGSG WDLRK PY+ Y
Sbjct: 259 SGIIDEIEDLLTENRIWRQRTIDIGVVSAEDALNWGFSGVMLRGSGIKWDLRKVAPYDAY 318
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+DFD+P+G +GDCYDRYL R+ EMRES++II QC+N + G V D KIVPP+
Sbjct: 319 DLIDFDVPVGTNGDCYDRYLCRIQEMRESLRIIHQCLNNMPA----GEVRCDDAKIVPPR 374
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MK SME+LIHHFKL+T+G+ VP G Y A+EAPKGEFGVYL+SDG +KPYRCKI+AP
Sbjct: 375 REEMKTSMEALIHHFKLFTQGFQVPPGATYTAIEAPKGEFGVYLVSDGSSKPYRCKIKAP 434
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHL ++++ H LAD+ AI+G+LD+VFGE+DR
Sbjct: 435 GFAHLAGLQYMGPKHFLADIVAIIGTLDVVFGEIDR 470
>gi|225077019|ref|ZP_03720218.1| hypothetical protein NEIFLAOT_02071 [Neisseria flavescens
NRL30031/H210]
gi|224951576|gb|EEG32785.1| hypothetical protein NEIFLAOT_02071 [Neisseria flavescens
NRL30031/H210]
Length = 418
Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats.
Identities = 250/417 (59%), Positives = 308/417 (73%), Gaps = 27/417 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K R++TINFGPQHPAAHGVLR+ILELDGE + R DPHIGLLHRGTEKL ETKT+LQA+PY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELDGEQIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDYV+ M E AY LAVEKL GI++PIR Q IRV+++E+ RIL+HL+ + + A D+G
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP----------------- 167
A+T L+ F +RE+LM YE SG+RMHAAYFRPGGV++D+P
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKFRNAKVLK 183
Query: 168 --------ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
+++ I +C+ FP ++ + LLT NRI+KQR V IG V E A GF+G
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTG 243
Query: 220 VMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR 279
VM+RGSG WD+RK+QPYE Y ++DFDIP+G +GDCYDRYL RM EMR+SV+II+QC +
Sbjct: 244 VMLRGSGVEWDVRKTQPYEVYDKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCSDW 303
Query: 280 LLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGE 339
L + GPV ++ K PPKR +MK ME LIHHFKL+TEG HVP GE Y AVE PKGE
Sbjct: 304 L--RVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGE 361
Query: 340 FGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
FGVY+ISDG NKPYR KIRAPG+AHLQ M+ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 362 FGVYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|84502608|ref|ZP_01000727.1| NADH dehydrogenase I, D subunit [Oceanicola batsensis HTCC2597]
gi|84389003|gb|EAQ01801.1| NADH dehydrogenase I, D subunit [Oceanicola batsensis HTCC2597]
Length = 407
Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats.
Identities = 276/394 (70%), Positives = 334/394 (84%), Gaps = 1/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++K R+F +NFGPQHPAAHGVLRL+LELDGEIVER DPH+GLLHRGTEKL+E++T+LQ +
Sbjct: 15 EQKIRNFNLNFGPQHPAAHGVLRLVLELDGEIVERCDPHVGLLHRGTEKLMESRTYLQNL 74
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DRLDYVAPMNQEHA+ LA+EKL G+ +P R LIRVLYSEIGR+L+HL+NVTTQAMD
Sbjct: 75 PYLDRLDYVAPMNQEHAWCLAIEKLTGVVVPRRASLIRVLYSEIGRVLNHLMNVTTQAMD 134
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTPPLWGFE RE+LM+FYERA G+R+HAAYFRPGGVHQD+PP+L++DI W + F
Sbjct: 135 VGALTPPLWGFEHREELMIFYERACGARLHAAYFRPGGVHQDLPPKLLDDIEEWSERFGG 194
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+D+++LLT NRIFKQRNV+IG V +D +GFSGVM+RGSG AWDLR++QPYECY E
Sbjct: 195 FLDDLNNLLTENRIFKQRNVDIGIVTEDDIQRYGFSGVMVRGSGLAWDLRRAQPYECYDE 254
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF IP+GK+GDCYDRYL R+ EMR+S II QC+ +L G + + KI PPKR
Sbjct: 255 FDFQIPVGKNGDCYDRYLCRVEEMRQSTSIILQCLEKLRAPEGQGDILSRG-KITPPKRI 313
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SME+LIHHFKLYTEG+ VP G+VYAAVEAPKGEFGVYL+SDG N+PYR K+RAPGY
Sbjct: 314 EMKTSMEALIHHFKLYTEGFRVPEGQVYAAVEAPKGEFGVYLVSDGTNRPYRAKLRAPGY 373
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HL AM+ + GHQLADV+AI+G+LDIVFGE+DR
Sbjct: 374 PHLAAMDHIATGHQLADVAAIIGTLDIVFGEIDR 407
>gi|91776410|ref|YP_546166.1| NADH dehydrogenase subunit D [Methylobacillus flagellatus KT]
gi|123380392|sp|Q1GZL2|NUOD_METFK RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|91710397|gb|ABE50325.1| NADH dehydrogenase subunit D [Methylobacillus flagellatus KT]
Length = 417
Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats.
Identities = 241/418 (57%), Positives = 308/418 (73%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ R++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHRGTEKL E +T+LQ+VP
Sbjct: 2 AEIRNYTMNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAENRTYLQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY +A+EKLLG+E+P+R Q IRV++ EI RIL+HLL + A+DV
Sbjct: 62 YMDRLDYVSMMVNEHAYVMAIEKLLGLEVPLRAQYIRVMFDEITRILNHLLWLGAHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+T L+ F ERE L YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMTVFLYAFREREDLFDCYEAVSGARMHAAYYRPGGVYRDLPDRMPQYEESTVRSKEDV 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + + FP+ +++ LLT NRI+KQR V IG V E A G +
Sbjct: 182 KQLNENRQGSLLDFIEDFTNRFPAYVDEYETLLTDNRIWKQRTVGIGVVSPERAMALGMT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG AWDLRK QPYE Y LDFDIPIG +GDCYDRYLVR+ E R+S +II+QC++
Sbjct: 242 GPMLRGSGVAWDLRKKQPYEVYDRLDFDIPIGVNGDCYDRYLVRIEEFRQSNRIIKQCID 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + + K+ PP R +MK ME+LIHHFKL+TEG+HVP GE YAAVE PKG
Sbjct: 302 WL--RKNPGPVISDNTKVAPPPREEMKHDMEALIHHFKLFTEGFHVPAGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YLISDG NKPYR KIRAPG+AHL A++ + +GH +AD+ AI+G+ DIVFGE+DR
Sbjct: 360 EFGIYLISDGANKPYRLKIRAPGFAHLAALDEMTRGHMIADLVAIIGTQDIVFGEIDR 417
>gi|153871540|ref|ZP_02000686.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Beggiatoa sp. PS]
gi|152071989|gb|EDN69309.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Beggiatoa sp. PS]
Length = 417
Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats.
Identities = 248/417 (59%), Positives = 304/417 (72%), Gaps = 27/417 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ R++T+NFGPQHPAAHGVLRL+LELDGE+VER DPHIGLLHRGTEKL ETK F Q+VPY
Sbjct: 3 EIRNYTLNFGPQHPAAHGVLRLVLELDGEVVERADPHIGLLHRGTEKLAETKPFNQSVPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDYV+ M EHAY +A+EKLLGI PIR Q IRV++ EI RIL+HLL + +DVG
Sbjct: 63 MDRLDYVSMMCNEHAYVMAIEKLLGITPPIRAQYIRVMFDEITRILNHLLWIGAHGLDVG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL--------------- 169
A+T L+ F ERE LM YE SG+R+HAAY+RPGGV++D+P +
Sbjct: 123 AMTIFLYAFREREDLMDCYEAVSGARLHAAYYRPGGVYRDLPDTMPQYEKSQYRNKDDVK 182
Query: 170 ----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
++ I + + FP +++ LLT NRI++QR V IG V E A GFSG
Sbjct: 183 RLNENREGSLLDFIEDFTNRFPKYVDEYETLLTENRIWRQRTVGIGVVTPERAQNLGFSG 242
Query: 220 VMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR 279
M+RGSG WDLRK QPYE Y ++DFDIP+G +GDCYDRYLVRM E R+S +II+QCV+
Sbjct: 243 PMLRGSGIEWDLRKKQPYEVYDKVDFDIPVGVNGDCYDRYLVRMEEFRQSNRIIKQCVDW 302
Query: 280 LLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGE 339
L + GPV D KI PP R +MK MESLIHHFKL+TEGY VP GEVY+A+E PKGE
Sbjct: 303 L--RKNPGPVMVDDHKITPPPRENMKGGMESLIHHFKLFTEGYCVPEGEVYSAIEHPKGE 360
Query: 340 FGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
FG+YL+SDG NKPYR KIRAPG+AHL AM+ + KGH +ADV AI+G+ DIVFGE+DR
Sbjct: 361 FGIYLVSDGANKPYRLKIRAPGFAHLAAMDEMAKGHMIADVVAIIGTQDIVFGEIDR 417
>gi|304389069|ref|ZP_07371113.1| NADH-quinone oxidoreductase subunit D [Neisseria meningitidis ATCC
13091]
gi|304336942|gb|EFM03132.1| NADH-quinone oxidoreductase subunit D [Neisseria meningitidis ATCC
13091]
Length = 418
Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats.
Identities = 250/417 (59%), Positives = 307/417 (73%), Gaps = 27/417 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K R++TINFGPQHPAAHGVLR+ILELDGE + R DPHIGLLHRGTEKL ETKT+LQA+PY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELDGEQIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDYV+ M E AY LAVEKL+GI++PIR Q IRV+++E+ RIL+HL+ + + A D+G
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLVGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP----------------- 167
A+T L+ F +RE+LM YE SG+RMHAAYFRPGGV++D+P
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKFRNAKVLK 183
Query: 168 --------ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
+++ I +C+ FP ++ + LLT NRI+KQR V IG V E A GF+G
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTG 243
Query: 220 VMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR 279
VM+RGSG WD+RK QPYE Y ++DFDIP+G +GDCYDRYL RM EMR+SV+II+QC
Sbjct: 244 VMLRGSGVEWDVRKKQPYEVYGKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCSEW 303
Query: 280 LLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGE 339
L + GPV ++ K PPKR +MK ME LIHHFKL+TEG HVP GE Y AVE PKGE
Sbjct: 304 L--RVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGE 361
Query: 340 FGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
FGVY+ISDG NKPYR KIRAPG+AHLQ M+ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 362 FGVYIISDGTNKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|148259935|ref|YP_001234062.1| NADH dehydrogenase subunit D [Acidiphilium cryptum JF-5]
gi|326403111|ref|YP_004283192.1| NADH-quinone oxidoreductase subunit D [Acidiphilium multivorum
AIU301]
gi|218534378|sp|A5FX11|NUOD_ACICJ RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|146401616|gb|ABQ30143.1| NADH dehydrogenase subunit D [Acidiphilium cryptum JF-5]
gi|325049972|dbj|BAJ80310.1| NADH-quinone oxidoreductase subunit D [Acidiphilium multivorum
AIU301]
Length = 406
Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats.
Identities = 254/387 (65%), Positives = 306/387 (79%), Gaps = 4/387 (1%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
T+N GPQHPA HGVLRLI+EL+GE V R DPHIGLLHRGTEKLIE K++LQAVPYFDRLD
Sbjct: 24 TVNVGPQHPATHGVLRLIMELEGETVTRADPHIGLLHRGTEKLIEYKSYLQAVPYFDRLD 83
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
YV+PM EHA+ALA E+LLG+++P R Q IRVL++EI RIL+HLLN A+D+GA +P
Sbjct: 84 YVSPMCCEHAFALATERLLGVKVPERAQWIRVLFAEITRILNHLLNAVHLALDIGAQSPS 143
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
LWG+EEREKL+ F+E SG+R HA YFRPGGV +D+P L E I W + FP L+D+
Sbjct: 144 LWGYEEREKLLTFHEAVSGARFHANYFRPGGVSKDMPTGLAEQIWEWSEKFPKFLDDLQS 203
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
LL NRIF+QR V+IG + EDA GFSG +R SG AWDLR++QPY+ Y E+DFDIP+
Sbjct: 204 LLNENRIFRQRLVDIGVISAEDALAMGFSGPNLRASGIAWDLRRAQPYDKYDEVDFDIPV 263
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
G+HGD +DRYLVR+ EM ES+KIIRQ + + GP+ D KI PPKRA+MKRSME
Sbjct: 264 GRHGDSFDRYLVRIREMAESLKIIRQALKAM----PEGPIKVQDHKITPPKRAEMKRSME 319
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
+LIHHFKLYTEGYHVP G Y AVEAPKGEFGVYL++DG N+PYRCKIRA G++HLQAM
Sbjct: 320 ALIHHFKLYTEGYHVPAGTTYTAVEAPKGEFGVYLVADGSNRPYRCKIRATGFSHLQAMN 379
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVDR 396
+ KGH LAD A+LGS+DIVFGEVDR
Sbjct: 380 LMSKGHLLADAIAVLGSIDIVFGEVDR 406
>gi|297662927|ref|XP_002809936.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial-like [Pongo abelii]
gi|115502343|sp|Q0MQG3|NDUS2_PONPY RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
2, mitochondrial; AltName: Full=Complex I-49kD;
Short=CI-49kD; AltName: Full=NADH-ubiquinone
oxidoreductase 49 kDa subunit; Flags: Precursor
gi|111661934|gb|ABH12180.1| mitochondrial complex I subunit NDUFS2 [Pongo pygmaeus]
Length = 463
Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats.
Identities = 246/390 (63%), Positives = 312/390 (80%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
++ T+NFGPQHPAAHGVLRL++EL GE+V + DPHIGLLHRGTEKLIE KT+LQA+PYFD
Sbjct: 78 KNMTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFD 137
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYV+ M E AY+LAVEKLL I P R Q IRVL+ EI R+L+H++ VTT A+D+GA+
Sbjct: 138 RLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGAM 197
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP W FEEREK+ FYER SG+RMHAAY RPGGVHQD+P L++DI + +F L++
Sbjct: 198 TPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDE 257
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ +LLT NRI++ R ++IG V E+A +GFSGVM+RGSG WDLRK+QPY+ Y +++FD
Sbjct: 258 LEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFD 317
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+P+G GDCYDRYL R+ EMR+S++II QC+N++ G + D K+ PPKRA+MK
Sbjct: 318 VPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKM----PPGEIKVDDAKVSPPKRAEMKT 373
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
SMESLIHHFKLYTEGY VP G Y A+EAPKGEFGVYL+SDG ++PYRCKI+APG+AHL
Sbjct: 374 SMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLA 433
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+++ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 434 SLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
>gi|314908354|gb|ADT62124.1| NADH dehydrogenase subunit 7 [Isoetes engelmannii]
Length = 396
Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats.
Identities = 255/394 (64%), Positives = 315/394 (79%), Gaps = 5/394 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K+ +FT+NFGPQHPAAHGVLRL+LE+DGE+VER +PHIGLLHRGTEKLIE KT+LQA+P
Sbjct: 7 KRIDNFTLNFGPQHPAAHGVLRLVLEMDGELVERAEPHIGLLHRGTEKLIEYKTYLQALP 66
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M QEHAY+LAVE+L E+P+R Q IRVL+ EI RIL+HLL +TT AMDV
Sbjct: 67 YFDRLDYVSMMAQEHAYSLAVERLCNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMDV 126
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP LW FEEREKL FYER SG+RMHA+Y RPGGV QD+P L EDI + F S
Sbjct: 127 GALTPFLWAFEEREKLFEFYERVSGARMHASYVRPGGVAQDLPSGLSEDIFLFTQEFASR 186
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
++++ ++LT NRI+KQR V+IG V E+A WGFSGVM+RGSG WDLRK+ PY+ Y L
Sbjct: 187 IDELEEMLTNNRIWKQRLVDIGIVTAEEALDWGFSGVMLRGSGVCWDLRKAAPYDVYDLL 246
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DFD+P+G GDCYDRY +R+ EMRES++I+ QC+N++ G + A D K+ PP R++
Sbjct: 247 DFDVPVGTRGDCYDRYRIRIEEMRESLRIMVQCLNKM----PSGMIKADDCKLCPPSRSE 302
Query: 304 MKRSMESLIHHFKLYTEGYHVPVG-EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
MK+SMESLIHHFK YTE + VP YAAVEAPKGEFGV+L+S+G N+PYRC+IRAPG+
Sbjct: 303 MKQSMESLIHHFKHYTECFSVPASPPTYAAVEAPKGEFGVFLVSNGTNRPYRCRIRAPGF 362
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ ++F+ K H LADV I+G+ DIVFGEVDR
Sbjct: 363 AHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 396
>gi|254805714|ref|YP_003083935.1| NADH dehydrogenase I chain D [Neisseria meningitidis alpha14]
gi|254669256|emb|CBA08148.1| NADH dehydrogenase I chain D [Neisseria meningitidis alpha14]
gi|254674107|emb|CBA09891.1| NADH dehydrogenase I chain D [Neisseria meningitidis alpha275]
Length = 418
Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats.
Identities = 250/417 (59%), Positives = 306/417 (73%), Gaps = 27/417 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K R++TINFGPQHPAAHGVLR+ILELDGE + R DPHIGLLHRGTEKL ETKT+LQA+PY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELDGEQIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDYV+ M E AY LAVEKL GI++PIR Q IRV+++E+ RIL+HL+ + + A D+G
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP----------------- 167
A+T L+ F +RE+LM YE SG+RMHAAYFRPGGV++D+P
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKFRNAKVLK 183
Query: 168 --------ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
+++ I +C+ FP ++ + LLT NRI+KQR V IG V E A GF+G
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTG 243
Query: 220 VMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR 279
VM+RGSG WD+RK QPYE Y ++DFDIP+G +GDCYDRYL RM EMR+SV+II+QC
Sbjct: 244 VMLRGSGVEWDVRKKQPYEVYDKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCSEW 303
Query: 280 LLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGE 339
L + GPV ++ K PPKR +MK ME LIHHFKL+TEG HVP GE Y AVE PKGE
Sbjct: 304 L--RVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGE 361
Query: 340 FGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
FGVY+ISDG NKPYR KIRAPG+AHLQ M+ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 362 FGVYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|114771819|ref|ZP_01449212.1| NADH dehydrogenase subunit D [alpha proteobacterium HTCC2255]
gi|114547635|gb|EAU50526.1| NADH dehydrogenase subunit D [alpha proteobacterium HTCC2255]
Length = 403
Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats.
Identities = 288/394 (73%), Positives = 336/394 (85%), Gaps = 3/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ R+F INFGPQHPAAHGVLRL+LELDGEIVER DPHIGLLHRGTEKL+E++T+LQ +
Sbjct: 13 EQRIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNL 72
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYVAPMNQEHA+ LA+EKL GIE+P R LIR+LY EIGRILSH+LNVTTQAMD
Sbjct: 73 PYFDRLDYVAPMNQEHAWCLAIEKLSGIEVPRRASLIRILYCEIGRILSHILNVTTQAMD 132
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTPPLWGFEEREKLMVFYERASG+R+HAAYFRPGGVHQD+P +L++DI W FP
Sbjct: 133 VGALTPPLWGFEEREKLMVFYERASGARLHAAYFRPGGVHQDLPQDLLDDIMAWTMEFPQ 192
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L DI LLT NRIFKQRNV+I V ++A WGFSGVM+RGSG AWDLR++QPYECY E
Sbjct: 193 VLADIDGLLTENRIFKQRNVDIAIVSEQEALDWGFSGVMVRGSGMAWDLRRAQPYECYDE 252
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+FDIP+GK+GDCYDRYL RM EMRES+KII+Q +++L + K+ PP R+
Sbjct: 253 FEFDIPVGKNGDCYDRYLCRMQEMRESLKIIQQAIHKLESTTGDV---LARGKLTPPNRS 309
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
DMK SMESLIHHFKLYTEG+ VP GEVY AVEAPKGEFGV+L+SDG NKPY+ KIRAPGY
Sbjct: 310 DMKTSMESLIHHFKLYTEGFKVPEGEVYVAVEAPKGEFGVFLVSDGSNKPYKTKIRAPGY 369
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HL AM+ LCKGHQLADV+AI+G+LD+VFGE+DR
Sbjct: 370 LHLAAMDHLCKGHQLADVAAIIGTLDVVFGEIDR 403
>gi|319638817|ref|ZP_07993575.1| NADH dehydrogenase subunit I D [Neisseria mucosa C102]
gi|317399721|gb|EFV80384.1| NADH dehydrogenase subunit I D [Neisseria mucosa C102]
Length = 418
Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats.
Identities = 250/417 (59%), Positives = 306/417 (73%), Gaps = 27/417 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K R++TINFGPQHPAAHGVLR+ILELDGE + R DPHIGLLHRGTEKL ETKT+LQA+PY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELDGEQIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDYV+ M E AY LAVEKL GI++PIR Q IRV+++E+ RIL+HL+ + + A D+G
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP----------------- 167
A+T L+ F +RE+LM YE SG+RMHAAYFRPGGV++D+P
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKFRNAKVLK 183
Query: 168 --------ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
+++ I +C+ FP ++ + LLT NRI+KQR V IG V E A GF+G
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVTPERAMQKGFTG 243
Query: 220 VMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR 279
VM+RGSG WD+RK QPYE Y ++DFDIP+G +GDCYDRYL RM EMR+SV+II+QC
Sbjct: 244 VMLRGSGVEWDVRKKQPYEVYDKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCSEW 303
Query: 280 LLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGE 339
L + GPV ++ K PPKR +MK ME LIHHFKL+TEG HVP GE Y AVE PKGE
Sbjct: 304 L--RVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGE 361
Query: 340 FGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
FGVY+ISDG NKPYR KIRAPG+AHLQ M+ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 362 FGVYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|218767066|ref|YP_002341578.1| NADH dehydrogenase subunit D [Neisseria meningitidis Z2491]
gi|218534449|sp|A1INN7|NUOD_NEIMA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|121051074|emb|CAM07344.1| NADH dehydrogenase I chain D [Neisseria meningitidis Z2491]
gi|319411273|emb|CBY91680.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D;
NDH-1, chain D) [Neisseria meningitidis WUE 2594]
gi|325203361|gb|ADY98814.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
M01-240355]
Length = 418
Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats.
Identities = 250/417 (59%), Positives = 307/417 (73%), Gaps = 27/417 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K R++TINFGPQHPAAHGVLR+ILELDGE + R DPHIGLLHRGTEKL ETKT+LQA+PY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELDGEQIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDYV+ M E AY LAVEKL GI++PIR Q IRV+++E+ RIL+HL+ + + A D+G
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP----------------- 167
A+T L+ F +RE+LM YE SG+RMHAAYFRPGGV++D+P
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKFRNAKVLK 183
Query: 168 --------ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
+++ I +C+ FP ++ + LLT NRI+KQR V IG V E A GF+G
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTG 243
Query: 220 VMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR 279
VM+RGSG WD+RK+QPYE Y ++DFDIP+G +GDCYDRYL RM EMR+SV+II+QC
Sbjct: 244 VMLRGSGVEWDVRKTQPYEVYDKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCSEW 303
Query: 280 LLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGE 339
L + GPV ++ K PPKR +MK ME LIHHFKL+TEG HVP GE Y AVE PKGE
Sbjct: 304 L--RVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGE 361
Query: 340 FGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
FGVY+ISDG NKPYR KIRAPG+AHLQ M+ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 362 FGVYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|332528754|ref|ZP_08404731.1| NADH dehydrogenase subunit D [Hylemonella gracilis ATCC 19624]
gi|332041820|gb|EGI78169.1| NADH dehydrogenase subunit D [Hylemonella gracilis ATCC 19624]
Length = 417
Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats.
Identities = 232/418 (55%), Positives = 296/418 (70%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+V+R DPHIGLLHR TEKL E+KT++Q++P
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRATEKLAESKTYIQSLP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M E AY LA+EK+LGIE+P+R + IR ++ EI R+L+HL+ + + D
Sbjct: 62 YMDRLDYVSMMCNEQAYCLAIEKMLGIEVPLRAKYIRTMFGEITRLLNHLMWLGSHGNDC 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
G+ T ++ F ERE L YE SG+RMHAAYFRPGGV++D+P +
Sbjct: 122 GSSTILIYTFREREDLFDMYEAVSGARMHAAYFRPGGVYRDLPDSMPQHQASKVRSNRSL 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP +++ LLT NRI+KQR V IG V E A G +
Sbjct: 182 ADLNAKRQGSLLDFIDDFTQRFPKCVDEYETLLTDNRIWKQRTVGIGVVTPERALNLGMT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RG G AWDLRK QPY+ Y +DFDIP+GK GD YDRYLVR+ EMRES KII+QCV+
Sbjct: 242 GPMLRGCGIAWDLRKQQPYDAYDRVDFDIPVGKTGDSYDRYLVRVAEMRESNKIIKQCVD 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ PP R MK +ME LIHHFKL+TEG+ VP GE YAAVE PKG
Sbjct: 302 WL--RANPGPVITDNHKVAPPSREAMKSNMEELIHHFKLFTEGFRVPAGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YL+SDG NKPYR KIRAPG+AHL ++ L +GH LAD AI+G+LDIVFGE+DR
Sbjct: 360 EFGIYLVSDGANKPYRLKIRAPGFAHLATLDELARGHMLADAVAIIGTLDIVFGEIDR 417
>gi|83953910|ref|ZP_00962631.1| NADH dehydrogenase delta subunit [Sulfitobacter sp. NAS-14.1]
gi|83841855|gb|EAP81024.1| NADH dehydrogenase delta subunit [Sulfitobacter sp. NAS-14.1]
Length = 407
Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats.
Identities = 287/395 (72%), Positives = 330/395 (83%), Gaps = 2/395 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++K R+F INFGPQHPAAHGVLRL+LELDGEIVER DPHIGLLHRGTEKL+E++T+LQ +
Sbjct: 14 EQKIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNL 73
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYVAPMNQEHA+ LA+EKL G+E+P R LIRVLYSEIGRILSHLLNVTTQAMD
Sbjct: 74 PYFDRLDYVAPMNQEHAWCLAIEKLTGVEVPRRASLIRVLYSEIGRILSHLLNVTTQAMD 133
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTPPLWGFEERE LM+FYERA G+R+HAAYFRPGGVHQD+PP L++DI W F S
Sbjct: 134 VGALTPPLWGFEEREDLMIFYERACGARLHAAYFRPGGVHQDLPPALLDDIEAWTHKFLS 193
Query: 183 -ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+ D+ LLT NRIFKQRN +IG V +D WGFSGVM+RGSG AWDLR++QPYECY
Sbjct: 194 GFMVDVDQLLTENRIFKQRNADIGIVSEQDIQDWGFSGVMVRGSGLAWDLRRAQPYECYD 253
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
E DF IP G +GDCYDRYLVRM EMR+S II+Q + +L G V + KI PP R
Sbjct: 254 EFDFQIPTGVNGDCYDRYLVRMEEMRQSTYIIQQAIEKLRAPEGQGDVL-ARGKITPPSR 312
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
MK MESLIHHFKLYTEG+HVP GEVY AVEAPKGEFGVYL++DG NKPYR K+RAPG
Sbjct: 313 TAMKTDMESLIHHFKLYTEGFHVPAGEVYCAVEAPKGEFGVYLVADGSNKPYRAKLRAPG 372
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Y HLQAM+++ KGHQLADV+AI+G++DIVFGEVDR
Sbjct: 373 YLHLQAMDYIAKGHQLADVAAIIGTMDIVFGEVDR 407
>gi|241760584|ref|ZP_04758676.1| NADH dehydrogenase subunit D [Neisseria flavescens SK114]
gi|241318765|gb|EER55291.1| NADH dehydrogenase subunit D [Neisseria flavescens SK114]
Length = 418
Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats.
Identities = 250/417 (59%), Positives = 307/417 (73%), Gaps = 27/417 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K R++TINFGPQHPAAHGVLR+ILELDGE + R DPHIGLLHRGTEKL ETKT+LQA+PY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELDGEQIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDYV+ M E AY LAVEKL GI++PIR Q IRV+++E+ RIL+HL+ + + A D+G
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP----------------- 167
A+T L+ F +RE+LM YE SG+RMHAAYFRPGGV++D+P
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKFRNAKVLK 183
Query: 168 --------ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
+++ I +C+ FP ++ + LLT NRI+KQR V IG V E A GF+G
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVTPERAMQKGFTG 243
Query: 220 VMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR 279
VM+RGSG WD+RK+QPYE Y ++DFDIP+G +GDCYDRYL RM EMR+SV+II+QC
Sbjct: 244 VMLRGSGVEWDVRKTQPYEVYDKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCSEW 303
Query: 280 LLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGE 339
L + GPV ++ K PPKR +MK ME LIHHFKL+TEG HVP GE Y AVE PKGE
Sbjct: 304 L--RVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGE 361
Query: 340 FGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
FGVY+ISDG NKPYR KIRAPG+AHLQ M+ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 362 FGVYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|261378537|ref|ZP_05983110.1| NADH dehydrogenase, D subunit [Neisseria cinerea ATCC 14685]
gi|269145087|gb|EEZ71505.1| NADH dehydrogenase, D subunit [Neisseria cinerea ATCC 14685]
Length = 418
Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats.
Identities = 249/417 (59%), Positives = 306/417 (73%), Gaps = 27/417 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K R++TINFGPQHPAAHGVLR+ILEL+GE + R DPHIGLLHRGTEKL ETKT+LQA+PY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELEGETIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDYV+ M E AY LAVEKL GI++PIR Q IRV+++E+ RIL+HL+ + + A D+G
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP----------------- 167
A+T L+ F +RE+LM YE SG+RMHAAYFRPGGV++D+P
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKFRNAKVLK 183
Query: 168 --------ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
+++ I +C+ FP ++ + LLT NRI+KQR V IG V E A GF+G
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVTPERAMQKGFTG 243
Query: 220 VMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR 279
VM+RGSG WD+RK QPYE Y ++DFDIP+G +GDCYDRYL RM EMR+SV+II+QC
Sbjct: 244 VMLRGSGVEWDVRKKQPYEVYDQMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCSEW 303
Query: 280 LLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGE 339
L + GPV ++ K PPKR +MK ME LIHHFKL+TEG HVP GE Y AVE PKGE
Sbjct: 304 L--RVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGE 361
Query: 340 FGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
FGVY+ISDG NKPYR KIRAPG+AHLQ M+ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 362 FGVYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|322436005|ref|YP_004218217.1| NADH dehydrogenase I, D subunit [Acidobacterium sp. MP5ACTX9]
gi|321163732|gb|ADW69437.1| NADH dehydrogenase I, D subunit [Acidobacterium sp. MP5ACTX9]
Length = 421
Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats.
Identities = 196/394 (49%), Positives = 255/394 (64%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K + +N GPQHP+ HGVLRL+LE+DGE V P IG LH G EK E K + Q V
Sbjct: 32 DPKDHTMVLNMGPQHPSTHGVLRLVLEIDGESVVSCAPDIGYLHTGIEKTCEAKFYQQVV 91
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DR+DY+ PM AY L VEKLLG+EIP R +RVL E+ RI SHL+ + T AMD
Sbjct: 92 PLTDRIDYLCPMTNNLAYCLGVEKLLGLEIPERAIYLRVLLQELTRIQSHLVWLGTHAMD 151
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALT L+ F ERE+L+ +E SG RM +Y R GG+ + P + + + +SFPS
Sbjct: 152 VGALTVFLYCFREREQLLRIFENLSGQRMMTSYVRIGGLSMEPPLDFYKQCQDFINSFPS 211
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+++ LL N I+K R +G + EDA G +G +R SG WDLR+ PY Y +
Sbjct: 212 KIDEYEGLLNANPIWKGRLQGVGYLSPEDAVALGVTGPPLRASGVDWDLRRDMPYAGYEK 271
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
FD+P+ K GD + RY+VRM EMRES+KI +Q ++ + G + A PKI+ P R
Sbjct: 272 FKFDVPVSKVGDVWARYVVRMQEMRESLKICQQALDGMPA----GRIVADAPKIILPDRE 327
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
MK MESLIHHFK+ TEG+ VP GEVY A+EAP+GE Y++SDG KPYR +R PG+
Sbjct: 328 QMKTQMESLIHHFKIVTEGFGVPAGEVYQALEAPRGEMAYYVVSDGTAKPYRVHMRNPGF 387
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A LQA+E +CKG LADV A++GS+DIV GE+DR
Sbjct: 388 ATLQALETMCKGRLLADVVAVIGSIDIVLGEIDR 421
>gi|119897690|ref|YP_932903.1| NADH dehydrogenase subunit D [Azoarcus sp. BH72]
gi|218534386|sp|A1K5B1|NUOD_AZOSB RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|119670103|emb|CAL94016.1| putative NADH-ubiquinone oxidoreductase chain D [Azoarcus sp. BH72]
Length = 417
Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats.
Identities = 247/418 (59%), Positives = 310/418 (74%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ R++TINFGPQHP+AHGVLRL+LELDGE+VER DPHIGLLHRGTEKL ET+T++Q+VP
Sbjct: 2 AEIRNYTINFGPQHPSAHGVLRLVLELDGEVVERADPHIGLLHRGTEKLAETRTWVQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY +A+E+LLG+E+P+R Q IRV++ EI RIL+HLLN+ T A+D+
Sbjct: 62 YMDRLDYVSMMCNEHAYCMAIERLLGVEVPLRAQYIRVMFDEITRILNHLLNIGTHALDI 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+T L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMTMVLYTFREREDLMDAYEAVSGARMHAAYYRPGGVYRDLPDRMPQYQPNKFKNANVV 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ + + FP ++ LLT NRI+KQR V IG V E A WGFS
Sbjct: 182 KDLNAARQGSLLDFLDDFTQRFPRYCDEYETLLTDNRIWKQRTVGIGVVTPEQALAWGFS 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G MIRGSG AWDLRK QPYE Y ++DFDIP+GK+GDCYDRYL RM EMR+S +IIRQC++
Sbjct: 242 GPMIRGSGIAWDLRKKQPYEVYDKVDFDIPVGKNGDCYDRYLCRMEEMRQSNRIIRQCID 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ PP R MK +ME LIHHFKL+TEG HVP GE YAAVE PKG
Sbjct: 302 WL--RKNPGPVITDNHKVAPPSREQMKSNMEELIHHFKLFTEGMHVPKGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFGVY +SDG NKPYR K+RAPG+AHL AM+ + +GH +ADV AI+G++D+VFGE+DR
Sbjct: 360 EFGVYAVSDGANKPYRLKLRAPGFAHLAAMDEISRGHMIADVVAIIGTMDVVFGEIDR 417
>gi|56697620|ref|YP_167989.1| NADH dehydrogenase subunit D [Ruegeria pomeroyi DSS-3]
gi|81676164|sp|Q5LPR7|NUOD_SILPO RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|56679357|gb|AAV96023.1| NADH dehydrogenase I, D subunit [Ruegeria pomeroyi DSS-3]
Length = 405
Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats.
Identities = 286/394 (72%), Positives = 336/394 (85%), Gaps = 3/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++K R+F INFGPQHPAAHGVLR++LELDGEIVER DPHIGLLHRGTEKL+E++T+LQ +
Sbjct: 15 EQKIRNFNINFGPQHPAAHGVLRMVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNL 74
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYVAPMNQEHA+ LA+EKL G+E+P R LIRVLYSEIGRIL+HLLNVTTQAMD
Sbjct: 75 PYFDRLDYVAPMNQEHAWCLAIEKLTGVEVPRRASLIRVLYSEIGRILNHLLNVTTQAMD 134
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTPPLWGFEEREKLMVFYERA G+R+HAAYFRPGGVHQD+P L++DI W +FP+
Sbjct: 135 VGALTPPLWGFEEREKLMVFYERACGARLHAAYFRPGGVHQDLPDALLDDIEAWSHTFPN 194
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+DI LLT NRIFKQRN +IG V E+ +GFSGVM+RGSG AWDLR++QPYECY E
Sbjct: 195 VLDDIDGLLTENRIFKQRNCDIGVVSEEEILQYGFSGVMVRGSGLAWDLRRAQPYECYDE 254
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+F +P+GK+GDCYDRYL RM EMR+S+ IIRQ + +L + K+ PPKR
Sbjct: 255 FEFQVPVGKNGDCYDRYLCRMEEMRQSISIIRQAIAKLRDCPGDV---LARGKLTPPKRG 311
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
DMK SMESLIHHFKLYTEG+HVP GEVYAAVEAPKGEFGVYL++DG NKPYR KIRAPGY
Sbjct: 312 DMKTSMESLIHHFKLYTEGFHVPAGEVYAAVEAPKGEFGVYLVADGTNKPYRSKIRAPGY 371
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQAM+ + +GHQLADV+AI+G++DIVFGE+DR
Sbjct: 372 LHLQAMDHVARGHQLADVAAIIGTMDIVFGEIDR 405
>gi|83942671|ref|ZP_00955132.1| NADH dehydrogenase delta subunit [Sulfitobacter sp. EE-36]
gi|83846764|gb|EAP84640.1| NADH dehydrogenase delta subunit [Sulfitobacter sp. EE-36]
Length = 407
Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats.
Identities = 287/395 (72%), Positives = 330/395 (83%), Gaps = 2/395 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++K R+F INFGPQHPAAHGVLRL+LELDGEIVER DPHIGLLHRGTEKL+E++T+LQ +
Sbjct: 14 EQKIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNL 73
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYVAPMNQEHA+ LA+EKL G+E+P R LIRVLYSEIGRILSHLLNVTTQAMD
Sbjct: 74 PYFDRLDYVAPMNQEHAWCLAIEKLTGVEVPRRASLIRVLYSEIGRILSHLLNVTTQAMD 133
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTPPLWGFEERE LM+FYERA G+R+HAAYFRPGGVHQD+PP L++DI W F S
Sbjct: 134 VGALTPPLWGFEEREDLMIFYERACGARLHAAYFRPGGVHQDLPPALLDDIEAWTHKFLS 193
Query: 183 -ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+ D+ LLT NRIFKQRN +IG V +D WGFSGVM+RGSG AWDLR++QPYECY
Sbjct: 194 GFMVDVDQLLTENRIFKQRNADIGIVSEQDIQDWGFSGVMVRGSGLAWDLRRAQPYECYD 253
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
E DF IP G +GDCYDRYLVRM EMR+S II+Q + +L G V + KI PP R
Sbjct: 254 EFDFQIPTGVNGDCYDRYLVRMEEMRQSTYIIQQAIEKLRAPEGQGDVL-ARGKITPPSR 312
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
MK MESLIHHFKLYTEG+HVP GEVY AVEAPKGEFGVYL++DG NKPYR K+RAPG
Sbjct: 313 TAMKTDMESLIHHFKLYTEGFHVPAGEVYCAVEAPKGEFGVYLVADGSNKPYRAKLRAPG 372
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Y HLQAM+++ KGHQLADV+AI+G++DIVFGEVDR
Sbjct: 373 YLHLQAMDYVAKGHQLADVAAIIGTMDIVFGEVDR 407
>gi|115502341|sp|Q0MQG4|NDUS2_GORGO RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
2, mitochondrial; AltName: Full=Complex I-49kD;
Short=CI-49kD; AltName: Full=NADH-ubiquinone
oxidoreductase 49 kDa subunit; Flags: Precursor
gi|111661932|gb|ABH12179.1| mitochondrial complex I subunit NDUFS2 [Gorilla gorilla]
Length = 463
Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats.
Identities = 246/390 (63%), Positives = 311/390 (79%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
++ T+NFGPQHPAAHGVLRL++EL GE+V + DPHIGLLHRGTEKLIE KT+LQA+PYFD
Sbjct: 78 KNMTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFD 137
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYV+ M E AY+LAVEKLL I P R Q IRVL+ EI R+L+H++ VTT A+D+GA+
Sbjct: 138 RLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGAM 197
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP W FEEREK+ FYER SG+RMHAAY RPGGVHQD+P L++DI + +F L++
Sbjct: 198 TPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDE 257
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ +LLT NRI++ R ++IG V E+A +GFSGVM+RGSG WDLRK+QPY+ Y +++FD
Sbjct: 258 LEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFD 317
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+P+G GDCYDRYL R+ EMR+S++II QC+N++ G + D K+ PPKRA+MK
Sbjct: 318 VPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKM----PPGEIKVDDAKVSPPKRAEMKT 373
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
SMESLIHHFKLYTEGY VP G Y A+EAPKGEFGVYL+SDG ++PYRCKI+APG+AHL
Sbjct: 374 SMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLA 433
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 434 GLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
>gi|319412287|gb|ADV41824.1| NADH dehydrogenase subunit 7 [Bigelowiella natans]
Length = 397
Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats.
Identities = 253/394 (64%), Positives = 314/394 (79%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ + + ++NFGPQHP+AHGVLRL+LELDGE V R DPHIGLLHRGTEKLIE KT+LQA+
Sbjct: 8 ETRMETLSLNFGPQHPSAHGVLRLVLELDGERVVRADPHIGLLHRGTEKLIEHKTYLQAL 67
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M QEH Y+LAVE+LL +PIR Q IRV++SE+ RIL+HLL++TT A+D
Sbjct: 68 PYFDRLDYVSMMAQEHGYSLAVERLLQKNVPIRAQYIRVIFSELTRILNHLLSLTTHALD 127
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTP LW FEEREKLM FYER SG+RMHAAY RPGGV QD+P L+ DI + + F S
Sbjct: 128 VGALTPFLWAFEEREKLMEFYERVSGARMHAAYVRPGGVSQDLPAGLLSDISSFIEQFGS 187
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+++I +LLT NRI+KQR V IGTV A FSGVM+RGSG WDLR+S+PYE Y++
Sbjct: 188 RVDEIEELLTDNRIWKQRLVGIGTVSARAALAHSFSGVMLRGSGVRWDLRESRPYEVYNK 247
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
L FD+P+G GDCYDRYL+R+ EMR+S++I+ QC+ ++ G + D K+V P R
Sbjct: 248 LSFDVPVGTSGDCYDRYLIRIEEMRQSIRIVEQCIAQI----PSGHIKVDDNKVVKPTRP 303
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
MKRSMESLIHHFKL+TEG+ VP G+ YAAVEAPKGEFGVYLISDG ++PYRCKI+APG+
Sbjct: 304 QMKRSMESLIHHFKLFTEGFVVPKGDTYAAVEAPKGEFGVYLISDGTSRPYRCKIKAPGF 363
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL ++F+ K H +ADV AI+G+ DIVFGEVDR
Sbjct: 364 AHLGGLDFMSKEHMMADVVAIIGTQDIVFGEVDR 397
>gi|296313744|ref|ZP_06863685.1| NADH dehydrogenase, D subunit [Neisseria polysaccharea ATCC 43768]
gi|296839667|gb|EFH23605.1| NADH dehydrogenase, D subunit [Neisseria polysaccharea ATCC 43768]
Length = 418
Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats.
Identities = 248/417 (59%), Positives = 308/417 (73%), Gaps = 27/417 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K R++TINFGPQHPAAHGVLR+ILEL+GE + R DPHIGLLHRGTEKL ETKT+LQA+PY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELEGETIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDYV+ M E AY LAVEKL GI++PIR + IRV+++E+ RIL+HL+ + + A D+G
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRARYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP----------------- 167
A+T L+ F +RE+LM YE SG+RMHAAYFRPGGV++D+P
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKFRNAKVLK 183
Query: 168 --------ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
+++ I +C+ FP ++ + LLT NRI+KQR V IG V E A GF+G
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTG 243
Query: 220 VMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR 279
VM+RGSG WD+RK+QPYE Y ++DFDIP+G +GDCYDRYL RM EMR+SV+II+QCV+
Sbjct: 244 VMLRGSGVEWDVRKTQPYEVYDKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCVDW 303
Query: 280 LLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGE 339
L + GPV ++ K PKR +MK ME LIHHFKL+TEG HVP GE Y AVE PKGE
Sbjct: 304 L--RVNPGPVITTNHKFASPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGE 361
Query: 340 FGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
FGVY+ISDG NKPYR KIRAPG+AHLQ M+ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 362 FGVYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|145932440|ref|YP_001165352.1| NADH dehydrogenase subunit 7 [Phytophthora ramorum]
gi|110169638|gb|ABG54103.1| NADH dehydrogenase subunit 7 [Phytophthora ramorum]
gi|188038002|gb|ACD46620.1| NADH dehydrogenase subunit 7 [Phytophthora ramorum]
Length = 392
Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats.
Identities = 256/396 (64%), Positives = 317/396 (80%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M KK ++F+INFGPQHPAAHGVLRLILEL+GE+V++ D HIGLLHRGTEKLIE K +LQ
Sbjct: 1 MALKKIKNFSINFGPQHPAAHGVLRLILELNGEVVQKADSHIGLLHRGTEKLIEYKNYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+ M QEHAY LA+EKLL +IP+R Q IRVL+SEI RIL+HLL V A
Sbjct: 61 ALPYFDRLDYVSMMCQEHAYVLAIEKLLNCDIPLRAQYIRVLFSEITRILNHLLAVCCHA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+DVGA+TP WGFEEREKLM FYER SG+RMHAAYFRPGGV+QD+P L+ DI +C+ F
Sbjct: 121 LDVGAMTPYFWGFEEREKLMEFYERVSGARMHAAYFRPGGVNQDLPKGLLNDIYIFCEQF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ L++I ++LT NRI+KQR V+IG V +DA GFSGVM+RGSG +WDLRK+QPYE Y
Sbjct: 181 NTRLDEIEEMLTNNRIWKQRLVDIGIVSAKDALNLGFSGVMLRGSGISWDLRKTQPYEIY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+LDFDIP+G +GDCYDRYL+R+ EMR+S++II Q +N++ GP+ D KI P
Sbjct: 241 DQLDFDIPVGTNGDCYDRYLIRIEEMRQSIRIILQVLNKIPN----GPIKLDDKKITNPN 296
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +K SMESLIHHFK Y+E V GE Y +EAPKGE+GVYLISDG NKPYRCKI++P
Sbjct: 297 RIQIKNSMESLIHHFKYYSENISVNSGETYTVIEAPKGEYGVYLISDGTNKPYRCKIKSP 356
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ HLQA++F+ K H +ADV I+G+LD+VFGE+DR
Sbjct: 357 GFLHLQALDFIAKNHMIADVVTIIGTLDVVFGEIDR 392
>gi|115392079|ref|NP_001065294.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial precursor [Pan troglodytes]
gi|114560842|ref|XP_001173644.1| PREDICTED: NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) isoform 3 [Pan troglodytes]
gi|114560846|ref|XP_001173718.1| PREDICTED: NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) isoform 4 [Pan troglodytes]
gi|115502342|sp|Q0MQG5|NDUS2_PANTR RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
2, mitochondrial; AltName: Full=Complex I-49kD;
Short=CI-49kD; AltName: Full=NADH-ubiquinone
oxidoreductase 49 kDa subunit; Flags: Precursor
gi|111661930|gb|ABH12178.1| mitochondrial complex I subunit NDUFS2 [Pan troglodytes]
Length = 463
Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats.
Identities = 246/390 (63%), Positives = 311/390 (79%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
++ T+NFGPQHPAAHGVLRL++EL GE+V + DPHIGLLHRGTEKLIE KT+LQA+PYFD
Sbjct: 78 KNMTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFD 137
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYV+ M E AY+LAVEKLL I P R Q IRVL+ EI R+L+H++ VTT A+D+GA+
Sbjct: 138 RLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGAM 197
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP W FEEREK+ FYER SG+RMHAAY RPGGVHQD+P L++DI + +F L++
Sbjct: 198 TPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDE 257
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ +LLT NRI++ R ++IG V E+A +GFSGVM+RGSG WDLRK+QPY+ Y +++FD
Sbjct: 258 LEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFD 317
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+P+G GDCYDRYL R+ EMR+S++II QC+N++ G + D K+ PPKRA+MK
Sbjct: 318 VPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKM----PPGEIKVDDAKVSPPKRAEMKT 373
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
SMESLIHHFKLYTEGY VP G Y A+EAPKGEFGVYL+SDG ++PYRCKI+APG+AHL
Sbjct: 374 SMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLA 433
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 434 GLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
>gi|237746748|ref|ZP_04577228.1| NADH-ubiquinone oxidoreductase D subunit [Oxalobacter formigenes
HOxBLS]
gi|229378099|gb|EEO28190.1| NADH-ubiquinone oxidoreductase D subunit [Oxalobacter formigenes
HOxBLS]
Length = 417
Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats.
Identities = 238/418 (56%), Positives = 306/418 (73%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ R++T+NFGPQHP+AHGVLRLILELDGE + R DPHIG+LHR TEKL E +T+LQA+P
Sbjct: 2 AEIRNYTVNFGPQHPSAHGVLRLILELDGETIVRADPHIGMLHRATEKLAEQRTYLQALP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY +A+EK+LG+E+P+R Q IRV++ EI RI+SHLL + QA+D+
Sbjct: 62 YMDRLDYVSMMCSEHAYVMAIEKMLGLEVPVRAQYIRVMFDEITRIMSHLLWLGAQALDM 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE LM YE ASG+RMHAAY+RPGGV +D+P +
Sbjct: 122 GAMAVFLYAFREREDLMDCYEAASGARMHAAYYRPGGVSRDLPDAMPQFKKTRFQSDKRV 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + D FP+ +++ LLTGNRI+KQR V +G + E+A GF+
Sbjct: 182 KTLNANRQGSLLDFIENFTDRFPTCVDEYETLLTGNRIWKQRLVGVGVISPEEALASGFT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG WDLRK QPYE Y LDF IP+GK GDCYDRYLVR+ E+R+S +IIRQCV+
Sbjct: 242 GPMLRGSGVEWDLRKKQPYEVYDRLDFAIPVGKEGDCYDRYLVRVEELRQSNRIIRQCVD 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + D ++ PP R MK ME LIHHFKL+TEG+H+PVGE+Y+AVEAPKG
Sbjct: 302 WL--RKNPGPVKSDDYRVSPPPREKMKAGMEELIHHFKLFTEGFHLPVGEIYSAVEAPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YL+SDG NKP+R KIRAP + HLQ +E L +GH + D A++GS+DIVFGEVDR
Sbjct: 360 EFGIYLVSDGANKPFRMKIRAPSFVHLQGLEQLVRGHLIPDAVAVIGSIDIVFGEVDR 417
>gi|134296430|ref|YP_001120165.1| NADH dehydrogenase subunit D [Burkholderia vietnamiensis G4]
gi|229891281|sp|A4JGC7|NUOD_BURVG RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|134139587|gb|ABO55330.1| NADH dehydrogenase subunit D [Burkholderia vietnamiensis G4]
Length = 417
Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats.
Identities = 233/418 (55%), Positives = 299/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E KTF+Q+VP
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAENKTFIQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EH Y LA+E+LLGI++P R Q IRVL+ EI R+L+HL+ + A+DV
Sbjct: 62 YMDRLDYVSMMVNEHGYVLAIERLLGIDVPERAQYIRVLFDEITRVLNHLMWIGAHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQFKASKIRNEKAL 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP +++ LLT NRI+KQR V IG V E A G +
Sbjct: 182 AKMNEARSGSVLDFIDDFFTRFPKCIDEYETLLTDNRIWKQRLVGIGVVSPERALQMGLT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG AWDLRK QPYE Y +DFD+P+G +GDCYDRYLVR+ EMR+SV+I +QC+
Sbjct: 242 GPMLRGSGIAWDLRKKQPYEVYDRMDFDVPVGVNGDCYDRYLVRVEEMRQSVRIAKQCIE 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ PP R MK +ME LIHHFKL+TEG+HVP GE YAAVE PKG
Sbjct: 302 WL--RKNQGPVMTDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YL+SDG NKPYR KIRAPG+AHL +++ + +GH +AD I+G+ DIVFGE+DR
Sbjct: 360 EFGIYLVSDGANKPYRLKIRAPGFAHLASLDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>gi|121634116|ref|YP_974361.1| NADH dehydrogenase subunit D [Neisseria meningitidis FAM18]
gi|218534431|sp|A1KRS5|NUOD_NEIMF RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|120865822|emb|CAM09554.1| NADH dehydrogenase I chain D [Neisseria meningitidis FAM18]
gi|308388464|gb|ADO30784.1| NADH dehydrogenase I chain D [Neisseria meningitidis alpha710]
gi|325131610|gb|EGC54317.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
M6190]
gi|325135047|gb|EGC57675.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
M13399]
gi|325139135|gb|EGC61681.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
ES14902]
gi|325145308|gb|EGC67586.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
M01-240013]
gi|325205329|gb|ADZ00782.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
M04-240196]
Length = 418
Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats.
Identities = 249/417 (59%), Positives = 307/417 (73%), Gaps = 27/417 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K R++TINFGPQHPAAHGVLR+ILEL+GE + R DPHIGLLHRGTEKL ETKT+LQA+PY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELEGETIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDYV+ M E AY LAVEKL GI++PIR Q IRV+++E+ RIL+HL+ + + A D+G
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP----------------- 167
A+T L+ F +RE+LM YE SG+RMHAAYFRPGGV++D+P
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKFRNAKVLK 183
Query: 168 --------ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
+++ I +C+ FP ++ + LLT NRI+KQR V IG V E A GF+G
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTG 243
Query: 220 VMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR 279
VM+RGSG WD+RK+QPYE Y ++DFDIP+G +GDCYDRYL RM EMR+SV+II+QC
Sbjct: 244 VMLRGSGVEWDVRKTQPYEVYDKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCSEW 303
Query: 280 LLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGE 339
L + GPV ++ K PPKR +MK ME LIHHFKL+TEG HVP GE Y AVE PKGE
Sbjct: 304 L--RVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGE 361
Query: 340 FGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
FGVY+ISDG NKPYR KIRAPG+AHLQ M+ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 362 FGVYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|145589231|ref|YP_001155828.1| NADH dehydrogenase subunit D [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|229891296|sp|A4SXQ0|NUOD_POLSQ RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|145047637|gb|ABP34264.1| NADH dehydrogenase subunit D [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
Length = 417
Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats.
Identities = 236/418 (56%), Positives = 303/418 (72%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K +++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL ET+T++Q VP
Sbjct: 2 TKIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAETRTWIQNVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M+ EHAY LA+EKLL +++P+R Q IRV++ E+ R+L+HLL + +DV
Sbjct: 62 YMDRLDYVSMMSNEHAYVLAIEKLLQVDVPLRAQYIRVMFDELTRLLNHLLWIGCHGLDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F +RE + YE SG+RMHAAY+RPGGV++D+P ++
Sbjct: 122 GAMAVFLYAFRDREDIFDMYEAVSGARMHAAYYRPGGVYRDLPDQMAQYSKSKIRSASAI 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + + F + +++ +LLT NRI+KQR VNIG V E A GF+
Sbjct: 182 KRLNENRSGTLLDFIDQFTNGFDANVDEYCNLLTDNRIWKQRLVNIGIVTPERALQLGFT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG WDLRK QPYE Y LDFDIP+G +GD YDRYLVRM EMR+S +II+QCV
Sbjct: 242 GPMLRGSGIEWDLRKKQPYEVYDRLDFDIPVGVNGDSYDRYLVRMEEMRQSNRIIKQCVA 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L K GPV + + K+ PPKR DMK +ME LIHHFKL+TEG HVP GE Y+AVE PKG
Sbjct: 302 WL--KANSGPVMSDNHKVSPPKRVDMKTNMEELIHHFKLFTEGMHVPNGEAYSAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YLISDG NKPYR KIRAPG+ HL AM+ + +GH LAD I+G+ DIVFGE+DR
Sbjct: 360 EFGIYLISDGANKPYRMKIRAPGFVHLSAMDEMSRGHMLADAVTIIGTQDIVFGEIDR 417
>gi|117926906|ref|YP_867523.1| NADH dehydrogenase subunit D [Magnetococcus sp. MC-1]
gi|218534430|sp|A0LDS4|NUOD_MAGSM RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|117610662|gb|ABK46117.1| NADH dehydrogenase subunit D [Magnetococcus sp. MC-1]
Length = 397
Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats.
Identities = 238/395 (60%), Positives = 311/395 (78%), Gaps = 4/395 (1%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
D K+ +++ INFGPQHPAAHGVLRL+LELDGE+VER DPH+GLLHRGTEKL+E KT++Q
Sbjct: 7 DHKEFQNYAINFGPQHPAAHGVLRLLLELDGEVVERADPHVGLLHRGTEKLLEQKTYIQG 66
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
PYFDRLDY++ M++EHA+ +AVE+L IE+P R Q IR +Y+EI R ++HLL +
Sbjct: 67 TPYFDRLDYMSMMSEEHAWVIAVERLGQIEVPERAQYIRTIYAEITRFINHLLFFAAHGL 126
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
DVGA+T L+ F ERE+LM YE A G+RMHA YFRPGGV +D+P L + I +C+ FP
Sbjct: 127 DVGAMTMFLYCFREREELMDIYEAACGARMHANYFRPGGVARDLPDGLEQRIRDFCNHFP 186
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
S L++ LLT NRI+KQR V+IG V EDA+ WGF+G M+RGSG A+DLRK++PY+ Y
Sbjct: 187 SKLDEYETLLTNNRIWKQRLVDIGKVSQEDAFSWGFTGPMLRGSGVAFDLRKAEPYDAYD 246
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
++FDIP+GK+GD YDRYLVR+ E RE VKII+QC++++ + GPV + KI P R
Sbjct: 247 RVEFDIPVGKNGDSYDRYLVRIEECREGVKIIQQCLDQM----QPGPVRNDNFKISMPYR 302
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
DM++ MES+IHHFKL TEG+++P GEVYAAVE PKGE GVYL+SDGGNKPYR +IRA G
Sbjct: 303 QDMQQDMESMIHHFKLCTEGFNLPAGEVYAAVETPKGELGVYLVSDGGNKPYRARIRAAG 362
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ HLQA++ + +GH +ADV+ I+GS+DIVFGE+DR
Sbjct: 363 FNHLQAVKEMARGHMIADVTTIIGSIDIVFGEIDR 397
>gi|302383048|ref|YP_003818871.1| NADH dehydrogenase I, D subunit [Brevundimonas subvibrioides ATCC
15264]
gi|302193676|gb|ADL01248.1| NADH dehydrogenase I, D subunit [Brevundimonas subvibrioides ATCC
15264]
Length = 431
Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats.
Identities = 294/394 (74%), Positives = 340/394 (86%), Gaps = 1/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ R FTINFGPQHPAAHGVLRL+LELDGE+VERVDPHIGLLHRGTEKL+E +T+LQ V
Sbjct: 39 EMDDRKFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLMEARTYLQNV 98
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DRLDYVAPMNQEHA+ LA+E+L+GIE+P R QLIRVLYSEIGRILSH+LNVTTQA+D
Sbjct: 99 PYLDRLDYVAPMNQEHAFCLAIERLMGIEVPYRAQLIRVLYSEIGRILSHMLNVTTQALD 158
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTPPLWGFE+REKLMVFYERA G+R+HA YFRPGGVHQD+P L++DIG WC FP+
Sbjct: 159 VGALTPPLWGFEQREKLMVFYERACGARLHANYFRPGGVHQDLPMALIDDIGRWCAEFPT 218
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
AL DI L+T NRIFKQRNV+IG V E A WGFSGVM+RGS AWDLRKSQPYECY+E
Sbjct: 219 ALADIESLVTENRIFKQRNVDIGIVSKEQALEWGFSGVMLRGSDIAWDLRKSQPYECYAE 278
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LDFD+ +GK+GDC+DRYLVR+ EM++SV I+ QC+++L PV + KIVPP R
Sbjct: 279 LDFDVVVGKNGDCWDRYLVRVEEMKQSVHIMEQCIHKLRNCPGE-PVMVENNKIVPPTRG 337
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MKRSME+LIHHFKLYTEG+H P GEVYAAVEAPKGEFG+YL+SDG NKPYR KI APG+
Sbjct: 338 EMKRSMEALIHHFKLYTEGFHTPAGEVYAAVEAPKGEFGIYLVSDGTNKPYRVKISAPGF 397
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQAM+++ +GH LADVSAILGSLDIVFGEVDR
Sbjct: 398 RHLQAMDWMNRGHMLADVSAILGSLDIVFGEVDR 431
>gi|3048|emb|CAA38368.1| NADH dehydrogenase 49 kD subunit [Neurospora crassa]
Length = 478
Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats.
Identities = 238/393 (60%), Positives = 301/393 (76%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+K R +T+NFGPQHPAAHGVLRLILEL GE + R DPH+GLLHRGTEKL E +T+LQA+P
Sbjct: 90 RKVRHYTVNFGPQHPAAHGVLRLILELKGEEIVRADPHVGLLHRGTEKLCEYRTYLQALP 149
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M E +ALAVEKLL +EIP R + IR +++EI RIL+HL++V + AMDV
Sbjct: 150 YFDRLDYVSMMTNEQCFALAVEKLLNVEIPERAKWIRTMFAEITRILNHLMSVLSHAMDV 209
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP LWGFEEREKLM FYER SG+R+HAAY RPGGVHQDIP L++DI W F
Sbjct: 210 GALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPLGLLDDIYMWATQFGDR 269
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ ++LT NRI+ R IG V DA F+GVM+RGSG WD+RKSQPY+ Y ++
Sbjct: 270 IDETEEMLTDNRIWIDRLRGIGVVSAADALNLSFTGVMLRGSGVPWDIRKSQPYDAYDQV 329
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FD+P+G +GDCYDRYL RM E R+S++II QC+N++ GPV D KI PP R+
Sbjct: 330 EFDVPVGINGDCYDRYLCRMEEFRQSLRIIHQCLNKMPA----GPVRVEDYKISPPPRSA 385
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK +ME+LIHHF LYT+GY VP G+ Y+A+E PKGE GVY++SDG +PYR IRAPG+A
Sbjct: 386 MKENMEALIHHFLLYTKGYAVPPGDTYSAIEGPKGEMGVYVVSDGSERPYRVHIRAPGFA 445
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HL + L +GH LAD A++G++D+VFGEVDR
Sbjct: 446 HLGGFDHLSRGHMLADAVAVIGTMDLVFGEVDR 478
>gi|325137071|gb|EGC59667.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
M0579]
gi|325202927|gb|ADY98381.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
M01-240149]
gi|325207275|gb|ADZ02727.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
NZ-05/33]
Length = 418
Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats.
Identities = 250/417 (59%), Positives = 307/417 (73%), Gaps = 27/417 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K R++TINFGPQHPAAHGVLR+ILELDGE + R DPHIGLLHRGTEKL ETKT+LQA+PY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELDGEQIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDYV+ M E AY LAVEKL GI++PIR Q IRV+++E+ RIL+HL+ + + A D+G
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP----------------- 167
A+T L+ F +RE+LM YE SG+RMHAAYFRPGGV++D+P
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYEGSKFRNAKVLK 183
Query: 168 --------ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
+++ I +C+ FP ++ + LLT NRI+KQR V IG V E A GF+G
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTG 243
Query: 220 VMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR 279
VM+RGSG WD+RK+QPYE Y ++DFDIP+G +GDCYDRYL RM EMR+SV+II+QC
Sbjct: 244 VMLRGSGVEWDVRKTQPYEVYDKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCSEW 303
Query: 280 LLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGE 339
L + GPV ++ K PPKR +MK ME LIHHFKL+TEG HVP GE Y AVE PKGE
Sbjct: 304 L--RVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGE 361
Query: 340 FGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
FGVY+ISDG NKPYR KIRAPG+AHLQ M+ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 362 FGVYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|15676168|ref|NP_273300.1| NADH dehydrogenase subunit D [Neisseria meningitidis MC58]
gi|81857626|sp|Q9K1C0|NUOD_NEIMB RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|7225466|gb|AAF40698.1| NADH dehydrogenase I, D subunit [Neisseria meningitidis MC58]
gi|316985172|gb|EFV64124.1| NADH dehydrogenase, D subunit [Neisseria meningitidis H44/76]
gi|325141080|gb|EGC63583.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
CU385]
gi|325199447|gb|ADY94902.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
H44/76]
Length = 418
Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats.
Identities = 250/417 (59%), Positives = 308/417 (73%), Gaps = 27/417 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K R++TINFGPQHPAAHGVLR+ILELDGE + R DPHIGLLHRGTEKL ETKT+LQA+PY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELDGEQIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDYV+ M E AY LAVEKL+GI++PIR Q IRV+++E+ RIL+HL+ + + A D+G
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLVGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP----------------- 167
A+T L+ F +RE+LM YE SG+RMHAAYFRPGGV++D+P
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYEGSKFRNAKVLK 183
Query: 168 --------ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
+++ I +C+ FP ++ + LLT NRI+KQR V IG V E A GF+G
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTG 243
Query: 220 VMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR 279
VM+RGSG WD+RK+QPYE Y ++DFDIP+G +GDCYDRYL RM EMR+SV+II+QC
Sbjct: 244 VMLRGSGVEWDVRKTQPYEVYDKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCSEW 303
Query: 280 LLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGE 339
L + GPV ++ K PPKR +MK ME LIHHFKL+TEG HVP GE Y AVE PKGE
Sbjct: 304 L--RVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGE 361
Query: 340 FGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
FGVY+ISDG NKPYR KIRAPG+AHLQ M+ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 362 FGVYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|254294101|ref|YP_003060124.1| NADH dehydrogenase subunit D [Hirschia baltica ATCC 49814]
gi|254042632|gb|ACT59427.1| NADH dehydrogenase I, D subunit [Hirschia baltica ATCC 49814]
Length = 399
Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats.
Identities = 303/394 (76%), Positives = 336/394 (85%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
SR FTINFGPQHPAAHGVLR++LELDGEIVERVD HIGLLHRGTEKLIE KT+LQA+
Sbjct: 10 DPDSRKFTINFGPQHPAAHGVLRMVLELDGEIVERVDSHIGLLHRGTEKLIEYKTYLQAM 69
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDY APMNQEHA+ LA+EKL GI +P R IRVLYSEIGR+ SHLLNVTTQAMD
Sbjct: 70 PYFDRLDYCAPMNQEHAWCLAIEKLAGITVPRRASFIRVLYSEIGRLQSHLLNVTTQAMD 129
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTP WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQD+PPEL+EDI +CD F
Sbjct: 130 VGALTPITWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDVPPELLEDIYDFCDPFLK 189
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+DI LLT +RIFKQRNVNIG V + A WGFSGVM+RGSG AWDLR+SQPYE YSE
Sbjct: 190 VLDDIEGLLTESRIFKQRNVNIGQVSTQTALDWGFSGVMVRGSGMAWDLRRSQPYEIYSE 249
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LDF IP+GKHGDCYDRY+ RM EMRES+KII+QC++ + +GPV K PP+R
Sbjct: 250 LDFGIPVGKHGDCYDRYICRMDEMRESIKIIKQCIDMI----PIGPVLPERSKYAPPRRG 305
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SME+LIHHFKLYTEG+HVP GEVYA VEAPKGEFGVYL+SDG N+PYR KI+APGY
Sbjct: 306 EMKASMEALIHHFKLYTEGFHVPEGEVYATVEAPKGEFGVYLVSDGSNRPYRAKIKAPGY 365
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQAM+ LCKGHQLAD SAILGSLDIVFGE+DR
Sbjct: 366 AHLQAMDHLCKGHQLADASAILGSLDIVFGEIDR 399
>gi|11497462|ref|NP_042252.1| NADH dehydrogenase (ubiquinone), subunit 7 [Prototheca wickerhamii]
gi|6647672|sp|Q37619|NDUS2_PROWI RecName: Full=NADH-ubiquinone oxidoreductase 49 kDa subunit;
AltName: Full=NADH dehydrogenase subunit 7
gi|467853|gb|AAD12640.1| NADH dehydrogenase (ubiquinone), subunit 7 [Prototheca wickerhamii]
Length = 400
Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats.
Identities = 261/398 (65%), Positives = 314/398 (78%), Gaps = 6/398 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ K ++FTINFGPQHPAAHGVLRL+LE++GE+V+R DPHIGLLHRGTEKLIE K +LQ
Sbjct: 7 ITAPKYKNFTINFGPQHPAAHGVLRLVLEMNGEVVQRSDPHIGLLHRGTEKLIEYKNYLQ 66
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTT 118
A+PYFDRLDYV+ M QEHAY+LAVEKLL I +IP+R Q IRVL+SEI RIL+HLL VT
Sbjct: 67 ALPYFDRLDYVSMMCQEHAYSLAVEKLLNISKDIPLRAQYIRVLFSEITRILNHLLAVTC 126
Query: 119 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
AMDVGALTP LWGFEEREKLM FYER SG+RMHAAY RPGGV D+P L EDI +
Sbjct: 127 HAMDVGALTPFLWGFEEREKLMEFYERVSGARMHAAYIRPGGVALDLPLGLCEDIYKFSK 186
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
F S +++I ++LT NRI+KQR V++G V E A W FSGV++RGSG AWDLRK+QPYE
Sbjct: 187 QFASRIDEIEEMLTSNRIWKQRLVDVGVVSAEQALDWSFSGVLLRGSGIAWDLRKTQPYE 246
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
Y + F+IP+G GDCYDRYL+R+ EMRES++I+ Q +N + G + D KI P
Sbjct: 247 VYDRMKFNIPVGTRGDCYDRYLIRVQEMRESLRIVMQTINEMSK----GIIRLDDRKITP 302
Query: 299 PKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
P R MK+SMESLIHHFK YT G+ VP GE Y AVEAPKGEFGVYL+S+G +KPYRCKIR
Sbjct: 303 PTRDQMKQSMESLIHHFKFYTGGFVVPAGETYTAVEAPKGEFGVYLVSNGTSKPYRCKIR 362
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
APG+AHLQ ++F+ + H LADV I+G+ DIVFGEVDR
Sbjct: 363 APGFAHLQGLDFMARNHMLADVVTIIGTQDIVFGEVDR 400
>gi|288942131|ref|YP_003444371.1| NADH dehydrogenase I subunit D [Allochromatium vinosum DSM 180]
gi|288897503|gb|ADC63339.1| NADH dehydrogenase I, D subunit [Allochromatium vinosum DSM 180]
Length = 418
Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats.
Identities = 238/418 (56%), Positives = 304/418 (72%), Gaps = 28/418 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ R++T+NFGPQHP+AHGVLRL+LE+DGE++ER DPHIGLLHRGTEKL E K + Q++ Y
Sbjct: 3 EIRNYTLNFGPQHPSAHGVLRLVLEMDGEVIERADPHIGLLHRGTEKLAEYKPYNQSIGY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDYV+ M EH Y A+EKLLG++ P R Q IR L+ EI RIL+HL+ + A+D+G
Sbjct: 63 MDRLDYVSMMCNEHGYVRAIEKLLGVQAPERAQYIRTLFDEITRILNHLMWLAAHALDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL--------------- 169
A++ L+ F ERE L+ YE SG+RMHA Y+RPGGVH+D+P +
Sbjct: 123 AMSVFLYCFREREDLLDCYEAVSGARMHATYYRPGGVHRDLPDTMPRYEGKSKWHSAREI 182
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + D FP +++ LLT NRI+KQR V+IG V E A GF+
Sbjct: 183 AQRNSARDGSLLDFIQDFTDRFPGHVDEYETLLTDNRIWKQRTVDIGVVSPERALQLGFT 242
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG WDLRK QPY Y ++DFDIP+G +GDCYDRYLVRM EMR+S +IIRQCV+
Sbjct: 243 GPMLRGSGIEWDLRKKQPYAAYHQVDFDIPVGVNGDCYDRYLVRMEEMRQSNRIIRQCVD 302
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPVS D K+VPPKRA++K +ME+LIHHFKL+TEGY P GEVYAAVEAPKG
Sbjct: 303 WL--RANPGPVSIEDHKVVPPKRAEVKENMEALIHHFKLFTEGYCPPPGEVYAAVEAPKG 360
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG Y++SDG NKPYR K+RAPG+ HL A++ + +GH LADV AI+G+LDIVFGE+DR
Sbjct: 361 EFGCYIVSDGANKPYRLKVRAPGFPHLAALDEMSRGHMLADVVAIIGTLDIVFGEIDR 418
>gi|107023185|ref|YP_621512.1| NADH dehydrogenase subunit D [Burkholderia cenocepacia AU 1054]
gi|116690267|ref|YP_835890.1| NADH dehydrogenase subunit D [Burkholderia cenocepacia HI2424]
gi|206560700|ref|YP_002231465.1| NADH dehydrogenase subunit D [Burkholderia cenocepacia J2315]
gi|254247660|ref|ZP_04940981.1| NADH dehydrogenase I, D subunit [Burkholderia cenocepacia PC184]
gi|123244857|sp|Q1BV16|NUOD_BURCA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|229891271|sp|A0K920|NUOD_BURCH RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|229891272|sp|B4E5L9|NUOD_BURCJ RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|105893374|gb|ABF76539.1| NADH dehydrogenase subunit D [Burkholderia cenocepacia AU 1054]
gi|116648356|gb|ABK08997.1| NADH dehydrogenase subunit D [Burkholderia cenocepacia HI2424]
gi|124872436|gb|EAY64152.1| NADH dehydrogenase I, D subunit [Burkholderia cenocepacia PC184]
gi|198036742|emb|CAR52642.1| NADH dehydrogenase I chain D [Burkholderia cenocepacia J2315]
Length = 417
Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats.
Identities = 234/418 (55%), Positives = 300/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E+KTF+Q+VP
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESKTFIQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EH Y LA+EKLLGIE+P R Q IRVL+ EI R+L+HL+ + A+DV
Sbjct: 62 YMDRLDYVSMMVNEHGYVLAIEKLLGIEVPERAQYIRVLFDEITRVLNHLMWIGAHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNEKAL 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP +++ LLT NRI+KQR V IG V E A G +
Sbjct: 182 AKMNEARSGSVLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQMGLT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG AWDLRK QPYE Y +DFD+P+G +GDCYDRYLVR+ EMR+S++I +QC+
Sbjct: 242 GPMLRGSGIAWDLRKKQPYEVYDRMDFDVPVGVNGDCYDRYLVRVEEMRQSIRIAKQCIE 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ PP R MK +ME LIHHFKL+TEG+HVP GE YAAVE PKG
Sbjct: 302 WL--RKNPGPVMTDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YL+SDG NKPYR KIRAPG+AHL +++ + +GH +AD I+G+ DIVFGE+DR
Sbjct: 360 EFGIYLVSDGANKPYRLKIRAPGFAHLASLDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>gi|59802069|ref|YP_208781.1| NADH dehydrogenase subunit D [Neisseria gonorrhoeae FA 1090]
gi|194099644|ref|YP_002002775.1| NADH dehydrogenase subunit D [Neisseria gonorrhoeae NCCP11945]
gi|239999841|ref|ZP_04719765.1| NADH dehydrogenase subunit D [Neisseria gonorrhoeae 35/02]
gi|240015000|ref|ZP_04721913.1| NADH dehydrogenase subunit D [Neisseria gonorrhoeae DGI18]
gi|240017448|ref|ZP_04723988.1| NADH dehydrogenase subunit D [Neisseria gonorrhoeae FA6140]
gi|240081587|ref|ZP_04726130.1| NADH dehydrogenase subunit D [Neisseria gonorrhoeae FA19]
gi|240113869|ref|ZP_04728359.1| NADH dehydrogenase subunit D [Neisseria gonorrhoeae MS11]
gi|240116600|ref|ZP_04730662.1| NADH dehydrogenase subunit D [Neisseria gonorrhoeae PID18]
gi|240118824|ref|ZP_04732886.1| NADH dehydrogenase subunit D [Neisseria gonorrhoeae PID1]
gi|240122069|ref|ZP_04735031.1| NADH dehydrogenase subunit D [Neisseria gonorrhoeae PID24-1]
gi|240124363|ref|ZP_04737319.1| NADH dehydrogenase subunit D [Neisseria gonorrhoeae PID332]
gi|240126575|ref|ZP_04739461.1| NADH dehydrogenase subunit D [Neisseria gonorrhoeae SK-92-679]
gi|240129040|ref|ZP_04741701.1| NADH dehydrogenase subunit D [Neisseria gonorrhoeae SK-93-1035]
gi|254494624|ref|ZP_05107795.1| NADH dehydrogenase subunit I D [Neisseria gonorrhoeae 1291]
gi|260439639|ref|ZP_05793455.1| NADH dehydrogenase subunit D [Neisseria gonorrhoeae DGI2]
gi|268595651|ref|ZP_06129818.1| NADH-quinone oxidoreductase subunit D [Neisseria gonorrhoeae 35/02]
gi|268597683|ref|ZP_06131850.1| NADH-quinone oxidoreductase subunit D [Neisseria gonorrhoeae FA19]
gi|268599935|ref|ZP_06134102.1| NADH dehydrogenase subunit I D [Neisseria gonorrhoeae MS11]
gi|268602269|ref|ZP_06136436.1| NADH dehydrogenase subunit I D [Neisseria gonorrhoeae PID18]
gi|268604535|ref|ZP_06138702.1| NADH dehydrogenase subunit I D [Neisseria gonorrhoeae PID1]
gi|268682990|ref|ZP_06149852.1| NADH dehydrogenase subunit I D [Neisseria gonorrhoeae PID332]
gi|268685155|ref|ZP_06152017.1| NADH dehydrogenase subunit I D [Neisseria gonorrhoeae SK-92-679]
gi|268687418|ref|ZP_06154280.1| NADH dehydrogenase subunit I D [Neisseria gonorrhoeae SK-93-1035]
gi|291042880|ref|ZP_06568621.1| NADH-quinone oxidoreductase subunit D [Neisseria gonorrhoeae DGI2]
gi|293398109|ref|ZP_06642314.1| NADH dehydrogenase (quinone), D subunit [Neisseria gonorrhoeae F62]
gi|75355478|sp|Q5F618|NUOD_NEIG1 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|218534444|sp|B4RPI1|NUOD_NEIG2 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|59718964|gb|AAW90369.1| putative NADH dehydrogenase I chain D [Neisseria gonorrhoeae FA
1090]
gi|193934934|gb|ACF30758.1| NADH dehydrogenase delta subunit [Neisseria gonorrhoeae NCCP11945]
gi|226513664|gb|EEH63009.1| NADH dehydrogenase subunit I D [Neisseria gonorrhoeae 1291]
gi|268549040|gb|EEZ44458.1| NADH-quinone oxidoreductase subunit D [Neisseria gonorrhoeae 35/02]
gi|268551471|gb|EEZ46490.1| NADH-quinone oxidoreductase subunit D [Neisseria gonorrhoeae FA19]
gi|268584066|gb|EEZ48742.1| NADH dehydrogenase subunit I D [Neisseria gonorrhoeae MS11]
gi|268586400|gb|EEZ51076.1| NADH dehydrogenase subunit I D [Neisseria gonorrhoeae PID18]
gi|268588666|gb|EEZ53342.1| NADH dehydrogenase subunit I D [Neisseria gonorrhoeae PID1]
gi|268623274|gb|EEZ55674.1| NADH dehydrogenase subunit I D [Neisseria gonorrhoeae PID332]
gi|268625439|gb|EEZ57839.1| NADH dehydrogenase subunit I D [Neisseria gonorrhoeae SK-92-679]
gi|268627702|gb|EEZ60102.1| NADH dehydrogenase subunit I D [Neisseria gonorrhoeae SK-93-1035]
gi|291013314|gb|EFE05280.1| NADH-quinone oxidoreductase subunit D [Neisseria gonorrhoeae DGI2]
gi|291611372|gb|EFF40442.1| NADH dehydrogenase (quinone), D subunit [Neisseria gonorrhoeae F62]
gi|317165129|gb|ADV08670.1| NADH dehydrogenase subunit D [Neisseria gonorrhoeae TCDC-NG08107]
Length = 418
Score = 445 bits (1144), Expect = e-123, Method: Composition-based stats.
Identities = 250/417 (59%), Positives = 308/417 (73%), Gaps = 27/417 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K R++TINFGPQHPAAHGVLR+ILELDGE + R DPHIGLLHRGTEKL ETKT+LQA+PY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELDGEQIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDYV+ M E AY LAVEKL GI++PIR Q IRV+++E+ RIL+HL+ + + A D+G
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIP------------------ 166
A+T L+ F +RE+LM YE SG+RMHAAYFRPGGV++D+P
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPGFMPKYESSKFRNAKVLK 183
Query: 167 -------PELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
+++ I +C+ FP ++ + LLT NRI+KQR V IG V E A GF+G
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTG 243
Query: 220 VMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR 279
VM+RGSG WD+RK+QPYE Y ++DFDIP+G +GDCYDRYL RM EMR+SV+II+QC +
Sbjct: 244 VMLRGSGVEWDVRKTQPYEVYDKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCADW 303
Query: 280 LLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGE 339
L + GPV ++ K PPKR +MK ME LIHHFKL+TEG HVP GE Y AVE PKGE
Sbjct: 304 L--RVNPGPVITANHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGE 361
Query: 340 FGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
FGVY+ISDG NKPYR KIRAPG+AHLQ M+ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 362 FGVYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|261400472|ref|ZP_05986597.1| NADH dehydrogenase, D subunit [Neisseria lactamica ATCC 23970]
gi|313669283|ref|YP_004049567.1| NADH dehydrogenase I chain D [Neisseria lactamica ST-640]
gi|269209731|gb|EEZ76186.1| NADH dehydrogenase, D subunit [Neisseria lactamica ATCC 23970]
gi|309379800|emb|CBX21576.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|313006745|emb|CBN88215.1| NADH dehydrogenase I chain D [Neisseria lactamica 020-06]
Length = 418
Score = 445 bits (1144), Expect = e-123, Method: Composition-based stats.
Identities = 250/417 (59%), Positives = 307/417 (73%), Gaps = 27/417 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K R++TINFGPQHPAAHGVLR+ILELDGE + R DPHIGLLHRGTEKL ETKT+LQA+PY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELDGEQIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDYV+ M E AY LAVEKL GI++PIR Q IRV+++E+ RIL+HL+ + + A D+G
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP----------------- 167
A+T L+ F +RE+LM YE SG+RMHAAYFRPGGV++D+P
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKFRNAKVLK 183
Query: 168 --------ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
+++ I +C+ FP ++ + LLT NRI+KQR V IG V E A GF+G
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTG 243
Query: 220 VMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR 279
VM+RGSG WD+RK+QPYE Y ++DFDIP+G +GDCYDRYL RM EMR+SV+II+QC
Sbjct: 244 VMLRGSGVEWDVRKTQPYEVYGKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCSEW 303
Query: 280 LLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGE 339
L + GPV ++ K PPKR +MK ME LIHHFKL+TEG HVP GE Y AVE PKGE
Sbjct: 304 L--RVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGE 361
Query: 340 FGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
FGVY+ISDG NKPYR KIRAPG+AHLQ M+ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 362 FGVYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|163746200|ref|ZP_02153559.1| NADH dehydrogenase subunit D [Oceanibulbus indolifex HEL-45]
gi|161380945|gb|EDQ05355.1| NADH dehydrogenase subunit D [Oceanibulbus indolifex HEL-45]
Length = 414
Score = 445 bits (1144), Expect = e-123, Method: Composition-based stats.
Identities = 274/395 (69%), Positives = 327/395 (82%), Gaps = 2/395 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++K R+F INFGPQHPAAHGVLRL+LELDGE+VER DPHIGLLHRGTEKL+E++T+LQ +
Sbjct: 21 EQKIRNFNINFGPQHPAAHGVLRLVLELDGEVVERCDPHIGLLHRGTEKLMESRTYLQNL 80
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYVAPMNQEHA+ LA+EKL G +P R LIRVL+ EIGR+L+HLLN+TTQA+D
Sbjct: 81 PYFDRLDYVAPMNQEHAWCLAIEKLTGTMVPRRASLIRVLFCEIGRVLNHLLNITTQALD 140
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP- 181
VGALTPPLWGFEERE LM+FYERA G+R+HAAYFRPGGVHQD+PP L++DI W F
Sbjct: 141 VGALTPPLWGFEERESLMIFYERACGARLHAAYFRPGGVHQDLPPALLDDIEAWSKQFLT 200
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+ DI +LLT NRIFKQRNV+IG V ++ +GFSGVM+RGSG AWDLR+SQPYECY
Sbjct: 201 KFMVDIDELLTENRIFKQRNVDIGIVTEQEILDYGFSGVMVRGSGLAWDLRRSQPYECYD 260
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
E DF IP+GK+GDC+DRYL RM EMR+S II+Q + +L G + + KI PP R
Sbjct: 261 EFDFQIPVGKNGDCFDRYLCRMEEMRQSTYIIQQAIEKLRAPEGQGDIL-ARGKITPPSR 319
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
MK MESLIHHFKLYTEG+HVP GEVY AVEAPKGEFGVYL++DG NKPYR KIRAPG
Sbjct: 320 TAMKTDMESLIHHFKLYTEGFHVPEGEVYCAVEAPKGEFGVYLVADGSNKPYRAKIRAPG 379
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ HLQAM+ + GHQLADV+AI+G++D+VFGE+DR
Sbjct: 380 FLHLQAMDHVATGHQLADVAAIIGTMDVVFGEIDR 414
>gi|253998386|ref|YP_003050449.1| NADH dehydrogenase subunit D [Methylovorus sp. SIP3-4]
gi|313200462|ref|YP_004039120.1| NADH dehydrogenase i subunit D [Methylovorus sp. MP688]
gi|253985065|gb|ACT49922.1| NADH dehydrogenase I, D subunit [Methylovorus sp. SIP3-4]
gi|312439778|gb|ADQ83884.1| NADH dehydrogenase I, D subunit [Methylovorus sp. MP688]
Length = 417
Score = 445 bits (1144), Expect = e-123, Method: Composition-based stats.
Identities = 240/418 (57%), Positives = 306/418 (73%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ R++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E +T+LQ+VP
Sbjct: 2 AEIRNYTMNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAENRTYLQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY +A+EKLLG+E+PIR Q IRV++ EI R+L+HLL + A+DV
Sbjct: 62 YMDRLDYVSMMANEHAYVMAIEKLLGLEVPIRAQYIRVMFDEITRVLNHLLWLGAHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+T L+ F ERE L YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMTVFLYAFREREDLFDCYEAVSGARMHAAYYRPGGVYRDLPARMPQYESSTVRAKDEI 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + + FP +++ LLT NRI+KQR V IG V E A G S
Sbjct: 182 KRLNENRQGSLLDFIEDFTNRFPGYVDEYETLLTDNRIWKQRTVGIGVVTPERALALGLS 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG AWDLRK QPYE Y ++DFDIP+G +GDCYDRYLVR+ EMR+S +II+QC++
Sbjct: 242 GPMLRGSGFAWDLRKKQPYEVYDKMDFDIPVGVNGDCYDRYLVRIEEMRQSNRIIKQCID 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ PP R MK+ MESLIHHFKL+TEG+HVP GE YAAVE PKG
Sbjct: 302 WL--RKNPGPVITDNHKVAPPAREGMKQDMESLIHHFKLFTEGFHVPAGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YLISDG NKPYR KIRAPG+ HL A++ + +GH +AD+ AI+G+ DIVFGE+DR
Sbjct: 360 EFGIYLISDGANKPYRLKIRAPGFPHLAALDEMTRGHMIADLVAIIGTQDIVFGEIDR 417
>gi|322693271|gb|EFY85137.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Metarhizium acridum
CQMa 102]
Length = 470
Score = 445 bits (1144), Expect = e-123, Method: Composition-based stats.
Identities = 242/396 (61%), Positives = 306/396 (77%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
++ +K R +T+NFGPQHPAAHGVLRLILEL+GE + R DPH+GLLHRGTEKLIE K++LQ
Sbjct: 79 VEDRKVRHYTVNFGPQHPAAHGVLRLILELNGEEIIRADPHVGLLHRGTEKLIEYKSYLQ 138
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+ M E +ALAVEKLL IEIP R + IR ++ EI RIL+HL++V + A
Sbjct: 139 ALPYFDRLDYVSMMTNEQCFALAVEKLLNIEIPDRAKYIRTMFGEITRILNHLMSVLSHA 198
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTP LWGFEEREKLM FYER SG+R+HAAY RPGGVHQDIP L++DI W F
Sbjct: 199 MDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPVGLLDDIYQWATQF 258
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+++ ++LT NRI+ +R +G V DA F+GVM+RGSG WD+RKSQPY+ Y
Sbjct: 259 GDRIDETEEMLTDNRIWIERLRGVGVVSAADALNLSFTGVMLRGSGVPWDIRKSQPYDAY 318
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+++FD+P+GK+GDCYDRYL RM E R+S++II QC+N++ GPV D KI PP
Sbjct: 319 DKVEFDVPVGKNGDCYDRYLCRMEEFRQSLRIIHQCLNQMPA----GPVRVEDYKISPPP 374
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R MK +ME+LIHHF LYT+GY VP GE Y+ +EAPKGE GVY++SDG +PYRC IRAP
Sbjct: 375 RTAMKENMEALIHHFLLYTKGYAVPPGETYSVIEAPKGEMGVYVVSDGSERPYRCHIRAP 434
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHL + + KGH LAD A++G++D+VFGEVDR
Sbjct: 435 GFAHLGGFDHVSKGHLLADAVAVIGTMDLVFGEVDR 470
>gi|260223139|emb|CBA33403.1| NADH-quinone oxidoreductase subunit D [Curvibacter putative
symbiont of Hydra magnipapillata]
Length = 417
Score = 445 bits (1144), Expect = e-123, Method: Composition-based stats.
Identities = 237/418 (56%), Positives = 302/418 (72%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E+KT++Q++P
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESKTYIQSLP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY LA+EKLLGIE+PIR Q IRV+YSEI R+L+HL+ + + D
Sbjct: 62 YMDRLDYVSMMCNEHAYCLAIEKLLGIEVPIRAQYIRVMYSEITRLLNHLMWLGSHGNDC 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
G+ T ++ F ERE L YE ASG+RMHAAYFRPGGV++D+P +
Sbjct: 122 GSSTILIYTFREREDLFDMYEAASGARMHAAYFRPGGVYRDLPDTMPQFKASKVRNAKGV 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP+ L++ LLT NRI+KQR VNIG V E A GFS
Sbjct: 182 EELNRNRQGSLLDFIDDFAQRFPACLDEYHTLLTENRIWKQRTVNIGIVSPERALNMGFS 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG AWDLRK QPY+ Y +++FDIP+GK GD YDRYLVRM EM++S +II+QCV+
Sbjct: 242 GPMLRGSGIAWDLRKKQPYDAYDKVEFDIPVGKTGDVYDRYLVRMEEMKQSNRIIKQCVD 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L GPV + K+ PP R MK SME LIHHFKL+TEG+ VP GE YAAVE PKG
Sbjct: 302 WLKA--NPGPVITDNHKVAPPSREAMKTSMEELIHHFKLFTEGFRVPEGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+Y++SDG NKPYR KIR PG+ HL A+ + KGH +AD +I+G++DIVFGE+DR
Sbjct: 360 EFGIYIVSDGANKPYRLKIRPPGFVHLAALNEMAKGHMIADAVSIIGTMDIVFGEIDR 417
>gi|298370381|ref|ZP_06981697.1| NADH dehydrogenase (quinone), D subunit [Neisseria sp. oral taxon
014 str. F0314]
gi|298281841|gb|EFI23330.1| NADH dehydrogenase (quinone), D subunit [Neisseria sp. oral taxon
014 str. F0314]
Length = 418
Score = 445 bits (1144), Expect = e-123, Method: Composition-based stats.
Identities = 248/417 (59%), Positives = 306/417 (73%), Gaps = 27/417 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K R++TINFGPQHPAAHGVLR+ILEL+GE + R DPHIGLLHRGTEKL ETKT+LQA+PY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELEGETIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDYV+ M E AY LAVEKL I++PIR Q IRV+++E+ RIL+HL+ + + A D+G
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLARIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP----------------- 167
A+T L+ F +RE+LM YE SG+RMHAAYFRPGGV++D+P
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKFRNAKVLK 183
Query: 168 --------ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
+++ I +C+ FP ++ + LLT NRI+KQR V IG V E A GF+G
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTG 243
Query: 220 VMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR 279
VM+RGSG WD+RK QPYE Y ++DFDIP+G +GDCYDRYL RM EMR+SV+II+QC +
Sbjct: 244 VMLRGSGVEWDVRKKQPYEVYDQMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCADW 303
Query: 280 LLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGE 339
L + GPV ++ K PPKR +MK ME LIHHFKL+TEG HVP GE Y AVE PKGE
Sbjct: 304 L--RVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGE 361
Query: 340 FGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
FGVY+ISDG NKPYR KIRAPG+AHLQ M+ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 362 FGVYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|237748888|ref|ZP_04579368.1| NADH-ubiquinone oxidoreductase D subunit [Oxalobacter formigenes
OXCC13]
gi|229380250|gb|EEO30341.1| NADH-ubiquinone oxidoreductase D subunit [Oxalobacter formigenes
OXCC13]
Length = 417
Score = 444 bits (1143), Expect = e-123, Method: Composition-based stats.
Identities = 236/418 (56%), Positives = 304/418 (72%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ R++TINFGPQHP+AHGVLRLILELDGE + R DPHIG+LHR TEKL E +T+LQA+P
Sbjct: 2 AEIRNYTINFGPQHPSAHGVLRLILELDGETIVRADPHIGMLHRATEKLAEQRTYLQALP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY +A+EK+L +++PIR Q IRV++ EI R+LSHLL + +QA+D+
Sbjct: 62 YMDRLDYVSMMCSEHAYVMAIEKMLELDVPIRAQYIRVMFDEITRLLSHLLWLGSQALDM 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE LM YE ASG+RMHAAY+RPGGV QD+P +
Sbjct: 122 GAMAVILYAFREREDLMDCYEAASGARMHAAYYRPGGVSQDLPDSMPKFKKTKFQSDKRI 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + + FP +++ LLT NRI+KQR V +G + EDA GF+
Sbjct: 182 KTLNANREGSLLDFIEDFTNRFPKCVDEYETLLTDNRIWKQRLVGVGVISPEDALAAGFT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG WDLRK QPY Y ++DF IP+GK GDCYDRYLVR+ EMR+S +IIRQCV+
Sbjct: 242 GPMLRGSGVEWDLRKKQPYAVYDKMDFAIPVGKEGDCYDRYLVRVEEMRQSNRIIRQCVD 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L K GP+ + D ++ P RA MK ME +IHHFKL+TEG+H+P GE+Y+AVEAPKG
Sbjct: 302 WL--KQNPGPIKSDDYRVSTPPRAKMKTGMEEMIHHFKLFTEGFHLPKGEIYSAVEAPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+Y++SDG NKP+R KIRAP + HLQ +E L KGH +AD A++GS+DIVFGEVDR
Sbjct: 360 EFGIYMVSDGANKPFRMKIRAPSFVHLQGLEQLVKGHLIADAVAVIGSIDIVFGEVDR 417
>gi|78067043|ref|YP_369812.1| NADH dehydrogenase subunit D [Burkholderia sp. 383]
gi|123568007|sp|Q39EE8|NUOD_BURS3 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|77967788|gb|ABB09168.1| NADH dehydrogenase subunit D [Burkholderia sp. 383]
Length = 417
Score = 444 bits (1143), Expect = e-123, Method: Composition-based stats.
Identities = 234/418 (55%), Positives = 300/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E+KTF+Q+VP
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESKTFIQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EH Y LA+EKLLGIE+P R Q IRVL+ EI R+L+HL+ + A+DV
Sbjct: 62 YMDRLDYVSMMVNEHGYVLAIEKLLGIEVPERAQYIRVLFDEITRVLNHLMWIGAHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNEKAL 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP +++ LLT NRI+KQR V IG V E A G +
Sbjct: 182 AKMNEARSGSVLDFIDDFFARFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQMGLT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG AWDLRK QPYE Y +DFD+P+G +GDCYDRYLVR+ EMR+S++I +QC+
Sbjct: 242 GPMLRGSGIAWDLRKKQPYEVYDRMDFDVPVGVNGDCYDRYLVRVEEMRQSIRIAKQCIE 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ PP R MK +ME LIHHFKL+TEG+HVP GE YAAVE PKG
Sbjct: 302 WL--RKNPGPVMTDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YL+SDG NKPYR KIRAPG+AHL +++ + +GH +AD I+G+ DIVFGE+DR
Sbjct: 360 EFGIYLVSDGANKPYRLKIRAPGFAHLASLDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>gi|255261986|ref|ZP_05341328.1| NADH dehydrogenase (quinone), d subunit [Thalassiobium sp. R2A62]
gi|255104321|gb|EET46995.1| NADH dehydrogenase (quinone), d subunit [Thalassiobium sp. R2A62]
Length = 405
Score = 444 bits (1143), Expect = e-123, Method: Composition-based stats.
Identities = 286/394 (72%), Positives = 330/394 (83%), Gaps = 3/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ R+F INFGPQHPAAHGVLRL+LELDGEIVER DPHIGLLHRGTEKL+E++T+LQ +
Sbjct: 15 EQQIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNL 74
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYVAPMNQEHA+ LA+EKL G E+P R LIRVLYSEIGR+L+HLLNVTTQAMD
Sbjct: 75 PYFDRLDYVAPMNQEHAWCLAIEKLTGTEVPRRASLIRVLYSEIGRVLNHLLNVTTQAMD 134
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTPPLWGFEEREKLMVFYERA G+R+HAAYFRPGGVHQD+P +L+E+I W FP
Sbjct: 135 VGALTPPLWGFEEREKLMVFYERACGARLHAAYFRPGGVHQDLPDDLIEEIDSWATEFPK 194
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L DI LLT NRIFKQRN +IG V ++ WGFSGVM RGSG AWDLR+SQPYECY E
Sbjct: 195 VLADIDGLLTENRIFKQRNADIGVVSEQEILDWGFSGVMARGSGLAWDLRRSQPYECYDE 254
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF IP+G +GDCYDRYL RM EMRESVKII Q V +L + + K+ PP R
Sbjct: 255 FDFQIPVGVNGDCYDRYLCRMQEMRESVKIIHQAVAKLRVEKGDV---MARGKMTPPTRG 311
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SME+LIHHFKLYTEG+HVP GEVY AVEAPKGEFGVYL +DG NKPYR K+RAPGY
Sbjct: 312 EMKTSMEALIHHFKLYTEGFHVPEGEVYVAVEAPKGEFGVYLKADGSNKPYRAKLRAPGY 371
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQAM+ +CKGHQLADV+AI+G++D+VFGE+DR
Sbjct: 372 LHLQAMDHICKGHQLADVAAIIGTMDVVFGEIDR 405
>gi|74325199|ref|YP_316619.1| NADH dehydrogenase subunit 7 [Thalassiosira pseudonana]
gi|74100265|gb|AAZ99426.1| NADH dehydrogenase subunit 7 [Thalassiosira pseudonana]
Length = 398
Score = 444 bits (1143), Expect = e-123, Method: Composition-based stats.
Identities = 257/388 (66%), Positives = 309/388 (79%), Gaps = 4/388 (1%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
FTINFGPQHPAAHGVLRL+LEL+GEIV R DPHIGLLHRGTEKLIE K ++QA+PYFDRL
Sbjct: 15 FTINFGPQHPAAHGVLRLVLELNGEIVNRADPHIGLLHRGTEKLIEYKNYVQALPYFDRL 74
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
DYV+ M QEH+Y LA+EKL +IP R Q IRVL++EI RIL+HLL V AMDVGA+TP
Sbjct: 75 DYVSMMAQEHSYCLAIEKLFNCKIPERAQYIRVLFAEITRILNHLLAVGCHAMDVGAMTP 134
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
LW FEEREKLM FYER SG+RMHAAYFRPGG+ DIP L++DI + + F L ++
Sbjct: 135 FLWAFEEREKLMEFYERVSGARMHAAYFRPGGLQVDIPKGLLDDIYMFIEQFTLRLTEME 194
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
D+LT NRI+KQR V+IG V +DA WGFSGVM+RGSG WDLRKSQPYE Y +L+FDIP
Sbjct: 195 DMLTENRIWKQRLVDIGVVTAKDACQWGFSGVMLRGSGINWDLRKSQPYEVYEKLEFDIP 254
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
+G +GDCYDRYL+R+ EM+ES+KII QC+N + G V +D KI PP R +MK+SM
Sbjct: 255 VGTNGDCYDRYLIRVFEMKESLKIIEQCLNLMPA----GYVKTNDFKISPPTRVEMKQSM 310
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
E+LIHHFK+YT+G +P E Y EAPKGEFGVYLISD N+PYRCKI+APG+ HLQA+
Sbjct: 311 EALIHHFKMYTQGVIIPSNETYIGTEAPKGEFGVYLISDNTNRPYRCKIKAPGFNHLQAL 370
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVDR 396
+F+ KGH +ADV I+G+ DIVFGEVDR
Sbjct: 371 DFMSKGHLIADVVTIIGTQDIVFGEVDR 398
>gi|261379577|ref|ZP_05984150.1| NADH dehydrogenase, D subunit [Neisseria subflava NJ9703]
gi|284798051|gb|EFC53398.1| NADH dehydrogenase, D subunit [Neisseria subflava NJ9703]
Length = 418
Score = 444 bits (1143), Expect = e-123, Method: Composition-based stats.
Identities = 248/417 (59%), Positives = 307/417 (73%), Gaps = 27/417 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K R++TINFGPQHPAAHGVLR+ILEL+GE + R DPHIGLLHRGTEKL ETKT+LQA+PY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELEGETIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDYV+ M E AY LAVEKL GI++PIR Q IRV+++E+ RIL+HL+ + + A D+G
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP----------------- 167
A+T L+ F +RE+LM YE SG+RMHAAYFRPGGV++D+P
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKFRNAKVLK 183
Query: 168 --------ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
+++ I +C+ FP ++ + LLT NRI+KQR V IG V E A GF+G
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVTPERAMQKGFTG 243
Query: 220 VMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR 279
VM+RGSG WD+RK+QPYE Y ++DFDIP+G +GDCYDRYL RM EMR+SV+II+QC
Sbjct: 244 VMLRGSGVEWDVRKTQPYEVYDKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCSEW 303
Query: 280 LLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGE 339
L + GPV ++ K PPKR +MK +E LIHHFKL+TEG HVP GE Y AVE PKGE
Sbjct: 304 L--RVNPGPVITTNHKFAPPKRTEMKTGIEDLIHHFKLFTEGMHVPEGETYTAVEHPKGE 361
Query: 340 FGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
FGVY+ISDG NKPYR KIRAPG+AHLQ M+ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 362 FGVYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|172061206|ref|YP_001808858.1| NADH dehydrogenase subunit D [Burkholderia ambifaria MC40-6]
gi|229891269|sp|B1YTQ4|NUOD_BURA4 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|171993723|gb|ACB64642.1| NADH dehydrogenase I, D subunit [Burkholderia ambifaria MC40-6]
Length = 417
Score = 444 bits (1143), Expect = e-123, Method: Composition-based stats.
Identities = 232/418 (55%), Positives = 299/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E KTF+Q+VP
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAENKTFIQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EH Y LA+E+LLGI++P R Q IRVL+ EI R+L+HL+ + A+DV
Sbjct: 62 YMDRLDYVSMMVNEHGYVLAIERLLGIDVPERAQYIRVLFDEITRVLNHLMWIGAHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNEKAL 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP +++ LLT NRI+KQR V IG V E A G +
Sbjct: 182 AKMNEARSGSVLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQMGLT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG AWDLRK QPYE Y +DFD+P+G +GDCYDRYLVR+ EMR+S++I +QC+
Sbjct: 242 GPMLRGSGIAWDLRKKQPYEVYDRMDFDVPVGVNGDCYDRYLVRVEEMRQSIRIAKQCIE 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ PP R MK +ME LIHHFKL+TEG+HVP GE YAAVE PKG
Sbjct: 302 WL--RKNPGPVMTDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YL+SDG NKPYR KIRAPG+AHL +++ + +GH +AD I+G+ DIVFGE+DR
Sbjct: 360 EFGIYLVSDGANKPYRLKIRAPGFAHLASLDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>gi|159043860|ref|YP_001532654.1| NADH dehydrogenase subunit D [Dinoroseobacter shibae DFL 12]
gi|218534405|sp|A8LIT9|NUOD_DINSH RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|157911620|gb|ABV93053.1| NADH dehydrogenase I, D subunit [Dinoroseobacter shibae DFL 12]
Length = 404
Score = 444 bits (1143), Expect = e-123, Method: Composition-based stats.
Identities = 287/394 (72%), Positives = 336/394 (85%), Gaps = 3/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++K R+F INFGPQHPAAHGVLRL+LELDGEIVER DPHIGLLHRGTEKL+E++T+LQ +
Sbjct: 14 EQKIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNL 73
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYVAPMNQEHA+ LA+EKL G +P RG LIRVLY EIGRIL+HLLN+TTQAMD
Sbjct: 74 PYFDRLDYVAPMNQEHAWCLAIEKLTGTVVPRRGSLIRVLYCEIGRILNHLLNITTQAMD 133
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTPPLWGFEEREKLMVFYERA G+R+HAAYFRPGGVHQD+PP+L++DI W FPS
Sbjct: 134 VGALTPPLWGFEEREKLMVFYERACGARLHAAYFRPGGVHQDLPPDLLDDIEAWSHEFPS 193
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++DI LLT NRIFKQRN +IG V E+ WG+SGVM+RGSG AWDLR++QPYECY E
Sbjct: 194 VMDDIDGLLTENRIFKQRNCDIGVVTEEEILEWGYSGVMVRGSGLAWDLRRAQPYECYDE 253
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF IP+GK+GDCYDRYLVRM EMRES+KII+Q + +L + K+ PP RA
Sbjct: 254 FDFQIPVGKNGDCYDRYLVRMQEMRESLKIIQQAIVKLRETKGDV---LARGKLTPPSRA 310
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
DMK SME+LIHHFKLYTEG+HVP GEVYAAVEAPKGEFGV+L SDG N+PYR KIRAPGY
Sbjct: 311 DMKTSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKGEFGVFLKSDGTNRPYRAKIRAPGY 370
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ+M+ + KGHQLADV+AI+G++D+VFGE+DR
Sbjct: 371 LHLQSMDHVAKGHQLADVAAIIGTMDVVFGEIDR 404
>gi|161524207|ref|YP_001579219.1| NADH dehydrogenase subunit D [Burkholderia multivorans ATCC 17616]
gi|189351036|ref|YP_001946664.1| NADH dehydrogenase subunit D [Burkholderia multivorans ATCC 17616]
gi|221199659|ref|ZP_03572703.1| NADH-quinone oxidoreductase, D subunit [Burkholderia multivorans
CGD2M]
gi|221205441|ref|ZP_03578456.1| NADH-quinone oxidoreductase, D subunit [Burkholderia multivorans
CGD2]
gi|221211738|ref|ZP_03584717.1| NADH-quinone oxidoreductase, D subunit [Burkholderia multivorans
CGD1]
gi|229891273|sp|A9AFZ0|NUOD_BURM1 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|160341636|gb|ABX14722.1| NADH dehydrogenase I, D subunit [Burkholderia multivorans ATCC
17616]
gi|189335058|dbj|BAG44128.1| NADH dehydrogenase I chain D [Burkholderia multivorans ATCC 17616]
gi|221169099|gb|EEE01567.1| NADH-quinone oxidoreductase, D subunit [Burkholderia multivorans
CGD1]
gi|221174279|gb|EEE06711.1| NADH-quinone oxidoreductase, D subunit [Burkholderia multivorans
CGD2]
gi|221180944|gb|EEE13347.1| NADH-quinone oxidoreductase, D subunit [Burkholderia multivorans
CGD2M]
Length = 417
Score = 444 bits (1143), Expect = e-123, Method: Composition-based stats.
Identities = 234/418 (55%), Positives = 298/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E KTF+Q+VP
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAENKTFIQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EH Y LA+EKLLGI +P R Q IRVL+ EI R+L+HL+ + A+DV
Sbjct: 62 YMDRLDYVSMMVNEHGYVLAIEKLLGIAVPERAQYIRVLFDEITRVLNHLMWIGAHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNEKAL 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP +++ LLT NRI+KQR V IG V E A G +
Sbjct: 182 AKMNEARSGSVLDFIDDFFTRFPKCIDEYETLLTDNRIWKQRLVGIGVVSPERALQMGLT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG AWDLRK QPYE Y +DFD+P+G +GDCYDRYLVR+ EMR+SV+I +QC+
Sbjct: 242 GPMLRGSGIAWDLRKKQPYEVYDRMDFDVPVGVNGDCYDRYLVRVEEMRQSVRIAKQCIE 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ PP R MK +ME LIHHFKL+TEG+HVP GE YAAVE PKG
Sbjct: 302 WL--RKNPGPVMTDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YL+SDG NKPYR KIRAPG+AHL +++ + +GH +AD I+G+ DIVFGE+DR
Sbjct: 360 EFGIYLVSDGANKPYRLKIRAPGFAHLASLDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>gi|254251864|ref|ZP_04945182.1| NADH dehydrogenase I,D subunit [Burkholderia dolosa AUO158]
gi|124894473|gb|EAY68353.1| NADH dehydrogenase I,D subunit [Burkholderia dolosa AUO158]
Length = 417
Score = 444 bits (1143), Expect = e-123, Method: Composition-based stats.
Identities = 233/418 (55%), Positives = 299/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E KTF+Q+VP
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAENKTFIQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EH Y LA+EKLLGIE+P R + IRVL+ EI R+L+HL+ + A+DV
Sbjct: 62 YMDRLDYVSMMVNEHGYVLAIEKLLGIEVPERAKYIRVLFDEITRVLNHLMWIGAHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNEKAL 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP +++ LLT NRI+KQR V IG V E A G +
Sbjct: 182 AKMNEARSGSVLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQMGLT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG AWDLRK QPYE Y ++FD+P+G +GDCYDRYLVR+ EMR+SV+I +QC+
Sbjct: 242 GPMLRGSGIAWDLRKKQPYEVYDRMEFDVPVGVNGDCYDRYLVRVEEMRQSVRIAKQCIE 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ PP R MK +ME LIHHFKL+TEG+HVP GE YAAVE PKG
Sbjct: 302 WL--RKNPGPVMTDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YL+SDG NKPYR KIRAPG+AHL +++ + +GH +AD I+G+ DIVFGE+DR
Sbjct: 360 EFGIYLVSDGANKPYRLKIRAPGFAHLASLDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>gi|225871983|ref|YP_002753437.1| NADH dehydrogenase I, D subunit [Acidobacterium capsulatum ATCC
51196]
gi|225791538|gb|ACO31628.1| NADH dehydrogenase I, D subunit [Acidobacterium capsulatum ATCC
51196]
Length = 414
Score = 444 bits (1143), Expect = e-123, Method: Composition-based stats.
Identities = 184/395 (46%), Positives = 255/395 (64%), Gaps = 4/395 (1%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ + + +N GPQHP+ HGVLR++LE+DGE V R IG LH G EK E K + Q
Sbjct: 24 QENQPHTMVLNMGPQHPSTHGVLRVVLEIDGETVVRAVSDIGYLHTGIEKTCEAKFYQQV 83
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
VP DR+DY+ PM Y LAVEKLL +EIP RGQ +RVL +E+ R+ SHL+ + T AM
Sbjct: 84 VPMTDRIDYLCPMTNNLTYCLAVEKLLQLEIPERGQWMRVLLNELTRLQSHLVWLGTHAM 143
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D+GALT L+ F ERE+++ +E SG RM +YFR GG+ + P + + P
Sbjct: 144 DIGALTVFLYCFREREEILRIFEMVSGQRMMTSYFRVGGLSLEPPLDFFPRVRKLLKVMP 203
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ +LL+GN I+ R +G + E A +G +G +R SG WDLR+ PY Y
Sbjct: 204 EKIDEYQNLLSGNPIWVNRLKGVGHLSAEQAVAFGVTGPALRASGVDWDLRRDMPYTGYE 263
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ F++P GD + RY VR+ EMRESVKI +Q ++ + GP++A PK+V P+R
Sbjct: 264 KFQFNVPTSTDGDVWARYWVRLQEMRESVKIAQQALDGM----PEGPLNADAPKVVLPER 319
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
MK ME+LI+HFK+ TEG+ VP GEVY AVE+P+GE G Y++SDG KPYR +R P
Sbjct: 320 EKMKTQMEALIYHFKIVTEGFAVPAGEVYQAVESPRGEMGYYVVSDGTAKPYRVHMRNPS 379
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+A LQA+ +C+G LADV A++GS+DIV GE+DR
Sbjct: 380 FATLQALPAMCEGRLLADVIAVIGSIDIVLGEIDR 414
>gi|254509923|ref|ZP_05121990.1| NADH dehydrogenase (quinone), D subunit [Rhodobacteraceae bacterium
KLH11]
gi|221533634|gb|EEE36622.1| NADH dehydrogenase (quinone), D subunit [Rhodobacteraceae bacterium
KLH11]
Length = 408
Score = 444 bits (1143), Expect = e-122, Method: Composition-based stats.
Identities = 287/394 (72%), Positives = 339/394 (86%), Gaps = 3/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++K R+F INFGPQHPAAHGVLRL+LELDGEIVER DPHIGLLHRGTEKL+E++T+LQ +
Sbjct: 18 EQKIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNL 77
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYVAPMNQEHA+ LA+EKL G+E+P RG LIRVLYSE+GR+L+HLLNVTTQAMD
Sbjct: 78 PYFDRLDYVAPMNQEHAWCLAIEKLTGVEVPRRGSLIRVLYSEVGRVLNHLLNVTTQAMD 137
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTPPLWGFEEREKLMVFYERA G+R+HAAYFRPGGVHQD+PPEL++DI W FP+
Sbjct: 138 VGALTPPLWGFEEREKLMVFYERACGARLHAAYFRPGGVHQDLPPELLDDIEAWSHEFPA 197
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+DI LLT NRIFKQRN +IG V +D +GFSGVM+RGSG AWDLR++QPYECY E
Sbjct: 198 VLDDIDGLLTENRIFKQRNADIGVVTEDDIQKYGFSGVMVRGSGLAWDLRRAQPYECYDE 257
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+F IP+GK+GDCYDRYLVRM EMR+S+ IIRQ + ++ + KI PPKR+
Sbjct: 258 FEFQIPVGKNGDCYDRYLVRMEEMRQSLLIIRQAIAKIRECPGDV---LARGKITPPKRS 314
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
DMK SMESLIHHFKLYTEG+HVP GEVYAAVEAPKGEFGVYL++DG NKPYR K+RAPG+
Sbjct: 315 DMKTSMESLIHHFKLYTEGFHVPAGEVYAAVEAPKGEFGVYLVADGTNKPYRAKLRAPGF 374
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQAM+ + GHQLADV+AI+G++D+VFGE+DR
Sbjct: 375 LHLQAMDHVAGGHQLADVAAIIGTMDVVFGEIDR 408
>gi|325129042|gb|EGC51892.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
N1568]
Length = 418
Score = 444 bits (1143), Expect = e-122, Method: Composition-based stats.
Identities = 249/417 (59%), Positives = 306/417 (73%), Gaps = 27/417 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K R++TINFGPQHPAAHGVLR+ILELDGE + R DPHIGLLHRGTEKL ETKT+LQA+PY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELDGEQIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDYV+ M E AY LAVEKL GI++PIR Q IRV+++E+ RIL+HL+ + + A D+G
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP----------------- 167
A+T L+ F +RE+LM YE SG+RMHAAYFRPGGV++D+P
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKFRNAKVLK 183
Query: 168 --------ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
+++ I +C+ FP ++ + LL NRI+KQR V IG V E A GF+G
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLNDNRIWKQRTVGIGVVSPERAMQKGFTG 243
Query: 220 VMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR 279
VM+RGSG WD+RK+QPYE Y ++DFDIP+G +GDCYDRYL RM EMR+SV+II+QC
Sbjct: 244 VMLRGSGVEWDVRKTQPYEVYDKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCSEW 303
Query: 280 LLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGE 339
L + GPV ++ K PPKR +MK ME LIHHFKL+TEG HVP GE Y AVE PKGE
Sbjct: 304 L--RVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGE 361
Query: 340 FGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
FGVY+ISDG NKPYR KIRAPG+AHLQ M+ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 362 FGVYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|322799190|gb|EFZ20620.1| hypothetical protein SINV_09347 [Solenopsis invicta]
Length = 470
Score = 444 bits (1143), Expect = e-122, Method: Composition-based stats.
Identities = 244/396 (61%), Positives = 310/396 (78%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ ++ ++ +NFGPQHPAAHGVLRLILELDGEIV DPHIGLLHRGTEKLIE KT++Q
Sbjct: 79 LAEQTIQNVKLNFGPQHPAAHGVLRLILELDGEIVLSADPHIGLLHRGTEKLIEYKTYMQ 138
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+ M E ++LA+EKLL I++P+R + IRVL++EI RIL+H++ V T A
Sbjct: 139 ALPYFDRLDYVSMMCNEQCFSLAIEKLLNIDVPLRAKYIRVLFAEITRILNHIMGVGTHA 198
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+D+GALTP W FEEREK+M FYER SG+RMHAAY RPGGV D+P L++DI W +
Sbjct: 199 LDIGALTPFFWLFEEREKMMEFYERVSGARMHAAYVRPGGVSLDMPLGLMDDIYDWASKY 258
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L+++ DLLT NRI+KQR ++IG V EDA WGFSGVM+RGSG WDLRK PY+ Y
Sbjct: 259 SERLDEVEDLLTENRIWKQRTIDIGCVSAEDALNWGFSGVMLRGSGIKWDLRKVAPYDAY 318
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+DFDIP+G +GDCYDRYL R+ EMR+S++II QC+N++ G V D KIVPP+
Sbjct: 319 HLVDFDIPVGTNGDCYDRYLCRVEEMRQSLRIIHQCLNQMPA----GEVRCDDAKIVPPR 374
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MK SME+LIHHFKL+T+G+ VP G Y A+EAPKGEFGVYL+SDG +KPYRCKI+AP
Sbjct: 375 REEMKSSMEALIHHFKLFTQGFQVPPGATYTAIEAPKGEFGVYLVSDGSSKPYRCKIKAP 434
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHL ++ H LAD+ AI+G+LD+VFGE+DR
Sbjct: 435 GFAHLAGLQRFGPKHFLADIVAIIGTLDVVFGEIDR 470
>gi|253807627|gb|ACT36205.1| NADH dehydrogenase subunit 7 [Helicosporidium sp. ex Simulium
jonesi]
Length = 398
Score = 444 bits (1143), Expect = e-122, Method: Composition-based stats.
Identities = 251/392 (64%), Positives = 312/392 (79%), Gaps = 4/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K ++FTINFGPQHPAAHGVLRL+LE++GE+V+R DPHIGLLHRGTEKLIE K ++QA+PY
Sbjct: 11 KLQNFTINFGPQHPAAHGVLRLVLEMNGEVVQRCDPHIGLLHRGTEKLIEYKNYMQALPY 70
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
FDRLDYV+ M QE AY+LAVE LL IE P R Q IRVL++EI RIL+HLL +T AMDVG
Sbjct: 71 FDRLDYVSMMCQEQAYSLAVENLLNIEAPKRAQYIRVLFAEITRILNHLLALTCHAMDVG 130
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
ALTP LWGFEEREKLM FYER SG+R+HAAY RPGGV D+P L +DI + F S +
Sbjct: 131 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVTYDLPIGLSQDIYQFARQFASRI 190
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
++I ++LT NRI+KQR V+IG V E A WGFSG ++R SG AWDLRK+QPY+ Y +++
Sbjct: 191 DEIEEMLTSNRIWKQRLVDIGVVSAEQAMSWGFSGALLRASGIAWDLRKTQPYDVYDQME 250
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FD+PIG GDCYDRYL+R+ EMR+S++II QC+N + G + D KI PP R +M
Sbjct: 251 FDVPIGTRGDCYDRYLIRVEEMRQSLRIIMQCLNEMPN----GIIRTDDHKITPPSRFEM 306
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K SME+LIHHFK Y++G+ VP GE+Y VEAPKGEFGVYL+S+G ++PYRCKIRAPG+AH
Sbjct: 307 KDSMEALIHHFKYYSQGFLVPAGEIYMGVEAPKGEFGVYLVSNGTHRPYRCKIRAPGFAH 366
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
LQ ++F+ + H LADV I+G+ DIVFGEVDR
Sbjct: 367 LQGLDFMARNHLLADVVTIVGTQDIVFGEVDR 398
>gi|254450921|ref|ZP_05064358.1| NADH dehydrogenase (quinone), D subunit [Octadecabacter antarcticus
238]
gi|198265327|gb|EDY89597.1| NADH dehydrogenase (quinone), D subunit [Octadecabacter antarcticus
238]
Length = 414
Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats.
Identities = 276/395 (69%), Positives = 330/395 (83%), Gaps = 2/395 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++K R+F INFGPQHPAAHGVLRL+LELDGE+VER DPHIGLLHRGTEKL+E++T+LQ +
Sbjct: 21 EQKIRNFNINFGPQHPAAHGVLRLVLELDGEVVERCDPHIGLLHRGTEKLMESRTYLQNL 80
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+PMNQEHA+ LA+EKL G +P R LIRVL+ EIGR+L+HL+NVTTQAMD
Sbjct: 81 PYFDRLDYVSPMNQEHAWCLAIEKLTGTVVPRRASLIRVLFCEIGRVLNHLMNVTTQAMD 140
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP- 181
VGALTPP+WGFEERE+LMVF ERA G+R+HAAYFRPGGVHQD+P L+EDI W D F
Sbjct: 141 VGALTPPVWGFEEREQLMVFSERACGARLHAAYFRPGGVHQDLPAGLIEDIEAWADQFMT 200
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+ D+ LLT NRIFKQRNV+IG + +D WGFSGVM RGSG AWDLR++QPYECY
Sbjct: 201 KFMVDVDGLLTENRIFKQRNVDIGIINEQDILDWGFSGVMARGSGLAWDLRRAQPYECYD 260
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
E +F IP+GK+GDCYDRYL RM EMR+SV IIRQ + +L + GP+ + K+ PP R
Sbjct: 261 EFEFQIPVGKNGDCYDRYLCRMEEMRQSVSIIRQAIVKLREPDGQGPIM-ARGKLTPPTR 319
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+MK SME+LIHHFKLYTEG+HVPVGE YA VEAPKGEFGV+L++DG NKPYR KIRAPG
Sbjct: 320 GEMKTSMEALIHHFKLYTEGFHVPVGETYACVEAPKGEFGVFLVADGSNKPYRAKIRAPG 379
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ HLQAM+F+ HQLADV+AI+GSLD+VFGE+DR
Sbjct: 380 FLHLQAMDFMATKHQLADVAAIIGSLDVVFGEIDR 414
>gi|325143085|gb|EGC65432.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
961-5945]
gi|325143155|gb|EGC65501.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
961-5945]
gi|325197530|gb|ADY92986.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
G2136]
Length = 418
Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats.
Identities = 249/417 (59%), Positives = 306/417 (73%), Gaps = 27/417 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K R++TINFGPQHPAAHGVLR+ILEL+GE + R DPHIGLLHRGTEKL ETKT+LQA+PY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELEGETIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDYV+ M E AY LAVEKL GI++PIR Q IRV+++E+ RIL+HL+ + + A D+G
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP----------------- 167
A+T L+ F +RE+LM YE SG+RMHAAYFRPGGV++D+P
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYEGSKFRNAKVLK 183
Query: 168 --------ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
+++ I +C+ FP ++ + LLT NRI+KQR V IG V E A GF+G
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTG 243
Query: 220 VMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR 279
VM+RGSG WD+RK QPYE Y ++DFDIP+G +GDCYDRYL RM EMR+SV+II+QC
Sbjct: 244 VMLRGSGVEWDVRKKQPYEVYGKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCSEW 303
Query: 280 LLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGE 339
L + GPV ++ K PPKR +MK ME LIHHFKL+TEG HVP GE Y AVE PKGE
Sbjct: 304 L--RVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGE 361
Query: 340 FGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
FGVY+ISDG NKPYR KIRAPG+AHLQ M+ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 362 FGVYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|218534460|sp|A8GN50|NUOD_RICAH RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
Length = 391
Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats.
Identities = 256/394 (64%), Positives = 313/394 (79%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ T+N GPQHPA HGVLRLILE+DGEIV DPHIGLLHRGTEKLIE KT+LQA+
Sbjct: 2 TNNTKTITLNLGPQHPATHGVLRLILEMDGEIVNNADPHIGLLHRGTEKLIEHKTYLQAI 61
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+PM QEHA+ALAVE LL E+P R Q IRVL+SE+ RIL+H LN+ +QA+D
Sbjct: 62 PYFDRLDYVSPMCQEHAFALAVESLLECEVPRRAQFIRVLFSELTRILNHTLNIGSQALD 121
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA TP LW FEEREK+M FYER SGSRMH+ YFRPGGV +D+P L+EDI + D FP
Sbjct: 122 IGATTPLLWLFEEREKIMEFYERVSGSRMHSNYFRPGGVAEDLPDGLLEDIDKFIDQFPP 181
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+DI LL NR++KQR V+IG V ++A WGFSG M+RGSG AWDLRKS PY+ Y E
Sbjct: 182 KLHDIESLLNENRLWKQRLVDIGVVSQKEAMDWGFSGPMLRGSGIAWDLRKSNPYDVYDE 241
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++F++PIGK+GDCYDRY VRM+EM ES+KII+QC+ ++ G V +DPK+ PP RA
Sbjct: 242 MEFEVPIGKNGDCYDRYFVRMLEMYESIKIIKQCIEKM----PKGAVKTNDPKLTPPTRA 297
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
MK SME++IHHFKLYT GY VP GE Y AVEAPKGEFGVYL S G N PYRC+I++PG+
Sbjct: 298 KMKESMEAMIHHFKLYTAGYDVPAGETYKAVEAPKGEFGVYLYSQGVNIPYRCRIKSPGF 357
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ ++F+ KGH +ADV I+ +LDIVFGE+DR
Sbjct: 358 AHLQGLDFMSKGHLMADVITIIATLDIVFGEIDR 391
>gi|161870820|ref|YP_001599993.1| NADH dehydrogenase subunit D [Neisseria meningitidis 053442]
gi|218534439|sp|A9M3D9|NUOD_NEIM0 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|161596373|gb|ABX74033.1| NADH dehydrogenase I chain D [Neisseria meningitidis 053442]
Length = 418
Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats.
Identities = 249/417 (59%), Positives = 306/417 (73%), Gaps = 27/417 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K R++TINFGPQHPAAHGVLR+ILEL+GE + R DPHIGLLHRGTEKL ETKT+LQA+PY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELEGETIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDYV+ M E AY LAVEKL GI++PIR Q IRV+++E+ RIL+HL+ + + A D+G
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP----------------- 167
A+T L+ F +RE+LM YE SG+RMHAAYFRPGGV++D+P
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKFRNAKVLK 183
Query: 168 --------ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
+++ I +C+ FP ++ + LLT NRI+KQR V IG V E A GF+G
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVTPERAMQKGFTG 243
Query: 220 VMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR 279
VM+RGSG WD+RK QPYE Y ++DFDIP+G +GDCYDRYL RM EMR+SV+II+QC
Sbjct: 244 VMLRGSGVEWDVRKKQPYEMYDKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCSEW 303
Query: 280 LLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGE 339
L + GPV ++ K PPKR +MK ME LIHHFKL+TEG HVP GE Y AVE PKGE
Sbjct: 304 L--RVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGE 361
Query: 340 FGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
FGVY+ISDG NKPYR KIRAPG+AHLQ M+ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 362 FGVYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|332526750|ref|ZP_08402852.1| NADH dehydrogenase subunit D [Rubrivivax benzoatilyticus JA2]
gi|332111153|gb|EGJ11185.1| NADH dehydrogenase subunit D [Rubrivivax benzoatilyticus JA2]
Length = 417
Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats.
Identities = 241/418 (57%), Positives = 299/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL ETKT+LQ +P
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAETKTYLQNLP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M E AY LAVEKLLGIE+P+R + IR +Y+E+ R+L+HLL + T AMD
Sbjct: 62 YMDRLDYVSMMVNEQAYCLAVEKLLGIEVPLRAKYIRTMYAELTRLLNHLLWLGTHAMDC 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE + YE SG+RMHAAYFRPGGV++D+P +
Sbjct: 122 GAMNVFLYAFREREDIFDMYEAVSGARMHAAYFRPGGVYRDLPDAMPQYTFSKIRNERAL 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FPS ++D LLT NRI+KQR V IG V E A GFS
Sbjct: 182 KELNANRQGSLLDFIEDFVKRFPSRVDDYETLLTDNRIWKQRTVGIGVVTPERALNLGFS 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG AWDLRK QPY+ Y +DFDIP+G GD YDRYLVRM EMR+S +I++QCV+
Sbjct: 242 GPMLRGSGIAWDLRKQQPYDAYDRVDFDIPVGVKGDTYDRYLVRMEEMRQSNRIVQQCVD 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ PP R DMK +ME LIHHFKL++EG HVP GE YA VE PKG
Sbjct: 302 WL--RANPGPVITDNHKVAPPARVDMKANMEELIHHFKLFSEGMHVPEGEAYATVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YLISDG NKPYR KIR PG+ HL A++ L +GH LAD AI+G++DIVFGEVDR
Sbjct: 360 EFGIYLISDGANKPYRMKIRPPGFVHLAALDELARGHMLADAVAIIGTMDIVFGEVDR 417
>gi|328775921|ref|XP_397330.3| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial isoform 1 [Apis mellifera]
Length = 480
Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats.
Identities = 238/394 (60%), Positives = 303/394 (76%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ R+ INFGPQHPAAHGVLRL++E++ E V R DPHIGLLHRGTEKL+E KT++QA+
Sbjct: 91 TPEFRNVVINFGPQHPAAHGVLRLLIEMNSEYVTRADPHIGLLHRGTEKLVEYKTYMQAL 150
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E +++A+EKLL I+IP+R + IR L++EI RIL+H++N+ T A+D
Sbjct: 151 PYFDRLDYVSMMCNEQCFSMAIEKLLNIDIPLRAKYIRTLFAEITRILNHIMNIGTHALD 210
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GALTP W FEEREKLM FYER SG+RMHAAY RPGGV D+P L++DI W F
Sbjct: 211 IGALTPFFWLFEEREKLMEFYERVSGARMHAAYIRPGGVSLDMPLGLLDDIYEWSSKFTL 270
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L++I DLLT NR++ R +IG V E A WGFSGVM+RGSG WD+RK PY+ Y
Sbjct: 271 RLDEIEDLLTENRVWTGRTKDIGVVTAEQAIEWGFSGVMLRGSGIQWDIRKKTPYDAYDL 330
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++FD+PIG GDCYDRYL RM EMR+S++II QC+N++ G V D KIVPP+R
Sbjct: 331 VEFDVPIGLKGDCYDRYLCRMEEMRQSLRIIYQCLNQM----PEGEVRIDDAKIVPPRRE 386
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SME+LIHHFKLYT+G+ VP G Y A+EAPKGEFGVYL+SDG ++PYRCKI+APG+
Sbjct: 387 EMKTSMEALIHHFKLYTQGFQVPPGSTYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGF 446
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL A+ + G LAD+ AI+G+LD+VFGE+DR
Sbjct: 447 AHLAALRHMGPGCLLADIVAIIGTLDVVFGEIDR 480
>gi|261391776|emb|CAX49231.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D;
NDH-1, chain D) [Neisseria meningitidis 8013]
Length = 418
Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats.
Identities = 249/417 (59%), Positives = 307/417 (73%), Gaps = 27/417 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K R++TINFGPQHPAAHGVLR+ILEL+GE + R DPHIGLLHRGTEKL ETKT+LQA+PY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELEGETIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDYV+ M E AY LAVEKL GI++PIR Q IRV+++E+ RIL+HL+ + + A D+G
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP----------------- 167
A+T L+ F +RE+LM YE SG+RMHAAYFRPGGV++D+P
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYEGSKFRNAKVLK 183
Query: 168 --------ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
+++ I +C+ FP ++ + LLT NRI+KQR V IG V E A GF+G
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTG 243
Query: 220 VMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR 279
VM+RGSG WD+RK+QPYE Y ++DFDIP+G +GDCYDRYL RM EMR+SV+II+QC
Sbjct: 244 VMLRGSGVEWDVRKTQPYEVYGKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCSEW 303
Query: 280 LLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGE 339
L + GPV ++ K PPKR +MK ME LIHHFKL+TEG HVP GE Y AVE PKGE
Sbjct: 304 L--RVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGE 361
Query: 340 FGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
FGVY+ISDG NKPYR KIRAPG+AHLQ M+ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 362 FGVYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|253996970|ref|YP_003049034.1| NADH dehydrogenase subunit D [Methylotenera mobilis JLW8]
gi|253983649|gb|ACT48507.1| NADH dehydrogenase I, D subunit [Methylotenera mobilis JLW8]
Length = 417
Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats.
Identities = 238/418 (56%), Positives = 308/418 (73%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ R++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHRGTEKL E +T+LQ+VP
Sbjct: 2 AEIRNYTMNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAENRTYLQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M+ EHAY +A+EK+LG+E+PIR Q IRV++ EI R+L+HLL + A+DV
Sbjct: 62 YMDRLDYVSMMSNEHAYVMAIEKMLGLEVPIRAQYIRVMFDEITRVLNHLLWLGAHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+T L+ F ERE L YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMTVFLYAFREREDLFDVYEAVSGARMHAAYYRPGGVYRDLPNSMPQYQVSSMRNAKTV 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + + FP+ +++ LLT NRI+KQR V IG V E A G +
Sbjct: 182 KAQNANRQGSLLDFIEDFTNRFPAYVDEYETLLTDNRIWKQRTVGIGVVSPERALALGMT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG WDLRK QPYE Y++LDFDIP+G +GDCYDRYLVRM E R+S +II+QCV+
Sbjct: 242 GPMLRGSGIEWDLRKKQPYEVYADLDFDIPVGVNGDCYDRYLVRMEEFRQSNRIIKQCVD 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV +D K+ PP R MK +ME LIHHFKL+TEG+HVP GE YAAVE PKG
Sbjct: 302 WL--RKNPGPVITADNKVAPPNREGMKTNMEDLIHHFKLFTEGFHVPAGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+Y++SDG NKPYR KIRAPG+ HL A++ + +GH +AD+ AI+G+ DIVFGE+DR
Sbjct: 360 EFGIYMVSDGANKPYRLKIRAPGFPHLAALDEMTRGHMIADLVAIIGTQDIVFGEIDR 417
>gi|254571861|ref|XP_002493040.1| hypothetical protein [Pichia pastoris GS115]
gi|238032838|emb|CAY70861.1| Hypothetical protein PAS_chr3_0808 [Pichia pastoris GS115]
gi|308152240|emb|CBI83539.1| NUCM (49 kDa) subunit of mitochondrial NADH:ubiquinone
oxidoreductase (complex I) [Pichia pastoris]
gi|328352948|emb|CCA39346.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2 [Pichia pastoris CBS
7435]
Length = 482
Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats.
Identities = 245/396 (61%), Positives = 306/396 (77%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + K R FT+NFGPQHPAAHGVLRLILEL GE + R DPH+GLLHRGTEKLIE+KT++Q
Sbjct: 91 VKRTKIRHFTLNFGPQHPAAHGVLRLILELHGEEILRSDPHVGLLHRGTEKLIESKTYMQ 150
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+ M E ++LAVEKLL +E+P RGQ IR L+ EI R+L+HL++V + A
Sbjct: 151 ALPYFDRLDYVSMMTNEQVFSLAVEKLLNLEVPERGQYIRTLFGEITRVLNHLMSVLSHA 210
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTP LWGFEEREKLM FYER SG+R+H+AY RPGGV QD+P L++DI W F
Sbjct: 211 MDVGALTPFLWGFEEREKLMEFYERVSGARLHSAYVRPGGVSQDLPAGLLDDIYMWATQF 270
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L++ +LLT +RI+KQR + IG V EDA +G SGVM+RGSG +D+RKSQPY+ Y
Sbjct: 271 GDRLDETEELLTDSRIWKQRTIGIGEVTAEDALNYGLSGVMLRGSGVPFDIRKSQPYDAY 330
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
++DFDI +G GDCYDRYL+RM E R+S++II QC N++ GPV D K+ PP
Sbjct: 331 DKVDFDIAVGTKGDCYDRYLIRMTEFRQSLRIIEQCCNQM----PPGPVKVEDFKVAPPP 386
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
RA MK ME+LIHHF LYT+GY VP GE Y A+EAPKGE VY++SDG +PYRCKIRAP
Sbjct: 387 RALMKEDMEALIHHFLLYTKGYAVPAGETYTAIEAPKGEMAVYVVSDGSERPYRCKIRAP 446
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHL A + + +GH L D AI+G++D+VFGEVDR
Sbjct: 447 GFAHLGAFDHIARGHFLPDAVAIIGTMDLVFGEVDR 482
>gi|187477544|ref|YP_785568.1| NADH dehydrogenase subunit D [Bordetella avium 197N]
gi|123513815|sp|Q2KV09|NUOD_BORA1 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|115422130|emb|CAJ48654.1| NADH dehydrogenase I chain D [Bordetella avium 197N]
Length = 418
Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats.
Identities = 240/419 (57%), Positives = 310/419 (73%), Gaps = 28/419 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHRGTEKL E KTF+QA+P
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAEHKTFIQALP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY +A+EK+LG+E P+R Q IRV++ EI RIL+HL+++ + A+DV
Sbjct: 62 YMDRLDYVSMMCNEHAYVMAIEKMLGVEAPLRAQYIRVMFDEITRILNHLMSLGSHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMAVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDTMAQYGETSKYRSDKE 181
Query: 170 ------------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF 217
++ I + + FP+ +++ LLT NRI+KQR V IG V + A GF
Sbjct: 182 LRAMNDARSGSLLDFIEDFTNRFPACVDEYETLLTDNRIWKQRLVGIGVVDPDRAKALGF 241
Query: 218 SGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCV 277
+G M+RGSG AWDLRK+QPYE Y +DFD+P+G +GDCYDRYLVR+ E+RES +IIRQCV
Sbjct: 242 TGPMLRGSGVAWDLRKTQPYEVYDLMDFDVPVGVNGDCYDRYLVRVAELRESNRIIRQCV 301
Query: 278 NRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPK 337
L +N GPV + KI PPKR MK +ME LIHHFKL+TEG+HVP GE YAAVE PK
Sbjct: 302 EWL--RNNPGPVMIENHKIAPPKREAMKSNMEELIHHFKLFTEGFHVPPGEAYAAVEHPK 359
Query: 338 GEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GEFG+YL+SDG NKPYR KIRAPG+AHLQ+++ + +GH +AD I+G+ DIVFGE+DR
Sbjct: 360 GEFGIYLVSDGANKPYRLKIRAPGFAHLQSLDEMSRGHMIADAVTIIGTQDIVFGEIDR 418
>gi|157825613|ref|YP_001493333.1| NADH dehydrogenase subunit D [Rickettsia akari str. Hartford]
gi|157799571|gb|ABV74825.1| NADH dehydrogenase subunit D [Rickettsia akari str. Hartford]
Length = 394
Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats.
Identities = 256/394 (64%), Positives = 313/394 (79%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ T+N GPQHPA HGVLRLILE+DGEIV DPHIGLLHRGTEKLIE KT+LQA+
Sbjct: 5 TNNTKTITLNLGPQHPATHGVLRLILEMDGEIVNNADPHIGLLHRGTEKLIEHKTYLQAI 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+PM QEHA+ALAVE LL E+P R Q IRVL+SE+ RIL+H LN+ +QA+D
Sbjct: 65 PYFDRLDYVSPMCQEHAFALAVESLLECEVPRRAQFIRVLFSELTRILNHTLNIGSQALD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA TP LW FEEREK+M FYER SGSRMH+ YFRPGGV +D+P L+EDI + D FP
Sbjct: 125 IGATTPLLWLFEEREKIMEFYERVSGSRMHSNYFRPGGVAEDLPDGLLEDIDKFIDQFPP 184
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+DI LL NR++KQR V+IG V ++A WGFSG M+RGSG AWDLRKS PY+ Y E
Sbjct: 185 KLHDIESLLNENRLWKQRLVDIGVVSQKEAMDWGFSGPMLRGSGIAWDLRKSNPYDVYDE 244
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++F++PIGK+GDCYDRY VRM+EM ES+KII+QC+ ++ G V +DPK+ PP RA
Sbjct: 245 MEFEVPIGKNGDCYDRYFVRMLEMYESIKIIKQCIEKM----PKGAVKTNDPKLTPPTRA 300
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
MK SME++IHHFKLYT GY VP GE Y AVEAPKGEFGVYL S G N PYRC+I++PG+
Sbjct: 301 KMKESMEAMIHHFKLYTAGYDVPAGETYKAVEAPKGEFGVYLYSQGVNIPYRCRIKSPGF 360
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ ++F+ KGH +ADV I+ +LDIVFGE+DR
Sbjct: 361 AHLQGLDFMSKGHLMADVITIIATLDIVFGEIDR 394
>gi|325520400|gb|EGC99518.1| NADH dehydrogenase subunit D [Burkholderia sp. TJI49]
Length = 417
Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats.
Identities = 234/418 (55%), Positives = 300/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E+KTF+Q+VP
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESKTFIQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EH Y LA+EKLLGI++P R Q IRVL+ EI R+L+HL+ + A+DV
Sbjct: 62 YMDRLDYVSMMVNEHGYVLAIEKLLGIDVPERAQYIRVLFDEITRVLNHLMWIGAHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNEKAL 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP +++ LLT NRI+KQR V IG V E A G +
Sbjct: 182 AKMNEARSGSVLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQMGLT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG AWDLRK QPYE Y LDFD+P+G +GDCYDRYLVR+ EMR+S++I +QC+
Sbjct: 242 GPMLRGSGIAWDLRKKQPYEVYDRLDFDVPVGVNGDCYDRYLVRVEEMRQSIRIAKQCIE 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ PP R MK +ME LIHHFKL+TEG+HVP GE YAAVE PKG
Sbjct: 302 WL--RKNPGPVMTDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YL+SDG NKPYR KIRAPG+AHL +++ + +GH +AD I+G+ DIVFGE+DR
Sbjct: 360 EFGIYLVSDGANKPYRLKIRAPGFAHLASLDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>gi|4758786|ref|NP_004541.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial isoform 1 precursor [Homo sapiens]
gi|20178314|sp|O75306|NDUS2_HUMAN RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
2, mitochondrial; AltName: Full=Complex I-49kD;
Short=CI-49kD; AltName: Full=NADH-ubiquinone
oxidoreductase 49 kDa subunit; Flags: Precursor
gi|3337443|gb|AAC27453.1| NADH-ubiquinone oxidoreductase NDUFS2 subunit [Homo sapiens]
gi|12652835|gb|AAH00170.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [Homo sapiens]
gi|12655197|gb|AAH01456.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [Homo sapiens]
gi|14250796|gb|AAH08868.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [Homo sapiens]
gi|55665941|emb|CAH72148.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [Homo sapiens]
gi|119573010|gb|EAW52625.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase), isoform CRA_a [Homo
sapiens]
gi|119573011|gb|EAW52626.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase), isoform CRA_a [Homo
sapiens]
gi|123994823|gb|ABM85013.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [synthetic construct]
Length = 463
Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats.
Identities = 246/390 (63%), Positives = 311/390 (79%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
++ T+NFGPQHPAAHGVLRL++EL GE+V + DPHIGLLHRGTEKLIE KT+LQA+PYFD
Sbjct: 78 KNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFD 137
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYV+ M E AY+LAVEKLL I P R Q IRVL+ EI R+L+H++ VTT A+D+GA+
Sbjct: 138 RLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGAM 197
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP W FEEREK+ FYER SG+RMHAAY RPGGVHQD+P L++DI + +F L++
Sbjct: 198 TPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDE 257
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ +LLT NRI++ R ++IG V E+A +GFSGVM+RGSG WDLRK+QPY+ Y +++FD
Sbjct: 258 LEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFD 317
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+P+G GDCYDRYL R+ EMR+S++II QC+N++ G + D K+ PPKRA+MK
Sbjct: 318 VPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKM----PPGEIKVDDAKVSPPKRAEMKT 373
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
SMESLIHHFKLYTEGY VP G Y A+EAPKGEFGVYL+SDG ++PYRCKI+APG+AHL
Sbjct: 374 SMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLA 433
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 434 GLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
>gi|3540239|gb|AAC34362.1| NADH dehydrogenase-ubiquinone Fe-S protein 2 precursor [Homo
sapiens]
Length = 463
Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats.
Identities = 246/390 (63%), Positives = 311/390 (79%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
++ T+NFGPQHPAAHGVLRL++EL GE+V + DPHIGLLHRGTEKLIE KT+LQA+PYFD
Sbjct: 78 KNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFD 137
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYV+ M E AY+LAVEKLL I P R Q IRVL+ EI R+L+H++ VTT A+D+GA+
Sbjct: 138 RLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGAM 197
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP W FEEREK+ FYER SG+RMHAAY RPGGVHQD+P L++DI + +F L++
Sbjct: 198 TPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDE 257
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ +LLT NRI++ R ++IG V E+A +GFSGVM+RGSG WDLRK+QPY+ Y +++FD
Sbjct: 258 LEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFD 317
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+P+G GDCYDRYL R+ EMR+S++II QC+N++ G + D K+ PPKRA+MK
Sbjct: 318 VPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKM----PPGEIKVDDAKVSPPKRAEMKT 373
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
SMESLIHHFKLYTEGY VP G Y A+EAPKGEFGVYL+SDG ++PYRCKI+APG+AHL
Sbjct: 374 SMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLA 433
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 434 GLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
>gi|308487975|ref|XP_003106182.1| CRE-GAS-1 protein [Caenorhabditis remanei]
gi|308254172|gb|EFO98124.1| CRE-GAS-1 protein [Caenorhabditis remanei]
Length = 482
Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats.
Identities = 229/394 (58%), Positives = 298/394 (75%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+K + +NFGPQHPAAHGVLRL+L+L+GE++ + PHIGLLHR TEKLIE KT+ QA+
Sbjct: 93 EKNLENMILNFGPQHPAAHGVLRLVLKLEGEVIIKAIPHIGLLHRATEKLIEHKTYTQAL 152
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E A++LAVEKLLGI+IP R + IR L E+ RI +H++ +TT A+D
Sbjct: 153 PYFDRLDYVSMMCNEQAWSLAVEKLLGIDIPPRAKYIRTLMGELTRIQNHIMGITTHALD 212
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP W FEEREKL F ER SG+RMHA Y RPGGV D+P L++DI W FP
Sbjct: 213 VGAMTPFFWMFEEREKLFEFSERVSGARMHANYVRPGGVAWDMPIGLMDDIYDWAIKFPE 272
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++++ D+LT NRI+K R ++IG V DA WGF+GVM+RGSG D+RK+QPY+ Y +
Sbjct: 273 RIDELEDMLTENRIWKARTIDIGLVSAADALNWGFTGVMVRGSGIKQDVRKTQPYDAYDQ 332
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++FD+PIG GDCYDRYL R+ EMR+S+ I+ QC+N++ G + D K+VPPKRA
Sbjct: 333 VEFDVPIGTKGDCYDRYLCRIEEMRQSLNIVHQCLNKMPA----GEIKVDDHKVVPPKRA 388
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK +MESLIHHFK +TEG+ VP G Y +EAPKGEFGVYL++DG KPYRC IRAPG+
Sbjct: 389 EMKENMESLIHHFKFFTEGFQVPPGATYVPIEAPKGEFGVYLVADGTGKPYRCFIRAPGF 448
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL A+ +C +AD+ A++G++DIVFGEVDR
Sbjct: 449 AHLAAVHDVCYMSLIADIVAVIGTMDIVFGEVDR 482
>gi|170733606|ref|YP_001765553.1| NADH dehydrogenase subunit D [Burkholderia cenocepacia MC0-3]
gi|229891270|sp|B1JVN8|NUOD_BURCC RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|169816848|gb|ACA91431.1| NADH dehydrogenase I, D subunit [Burkholderia cenocepacia MC0-3]
Length = 417
Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats.
Identities = 234/418 (55%), Positives = 299/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E+KTF+Q+VP
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESKTFIQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EH Y LA+EKLLGIE+P R Q IRVL+ EI R+L+HL+ + A+DV
Sbjct: 62 YMDRLDYVSMMVNEHGYVLAIEKLLGIEVPERAQYIRVLFDEITRVLNHLMWIGAHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNEKAL 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP +++ LLT NRI+KQR V IG V E A G +
Sbjct: 182 AKMNEARSGSVLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQMGLT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG AWDLRK QPYE Y +DFD+P+G +GDCYDRYLVR+ EMR+S+ I +QC+
Sbjct: 242 GPMLRGSGIAWDLRKKQPYEVYDRMDFDVPVGVNGDCYDRYLVRVEEMRQSILIAKQCIE 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ PP R MK +ME LIHHFKL+TEG+HVP GE YAAVE PKG
Sbjct: 302 WL--RKNPGPVMTDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YL+SDG NKPYR KIRAPG+AHL +++ + +GH +AD I+G+ DIVFGE+DR
Sbjct: 360 EFGIYLVSDGANKPYRLKIRAPGFAHLASLDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>gi|170698112|ref|ZP_02889192.1| NADH dehydrogenase I, D subunit [Burkholderia ambifaria IOP40-10]
gi|171316306|ref|ZP_02905527.1| NADH dehydrogenase I, D subunit [Burkholderia ambifaria MEX-5]
gi|170136970|gb|EDT05218.1| NADH dehydrogenase I, D subunit [Burkholderia ambifaria IOP40-10]
gi|171098532|gb|EDT43333.1| NADH dehydrogenase I, D subunit [Burkholderia ambifaria MEX-5]
Length = 417
Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats.
Identities = 232/418 (55%), Positives = 300/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E+KTF+Q+VP
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESKTFIQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EH Y LA+E+LLGI++P R Q IRVL+ EI R+L+HL+ + A+DV
Sbjct: 62 YMDRLDYVSMMVNEHGYVLAIERLLGIDVPERAQYIRVLFDEITRVLNHLMWIGAHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNEKAL 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP +++ LLT NRI+KQR V IG V E A G +
Sbjct: 182 AKMNEARSGSVLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQMGLT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG AWDLRK QPYE Y +DFD+P+G +GDCYDRYLVR+ EMR+S++I +QC+
Sbjct: 242 GPMLRGSGIAWDLRKKQPYEVYDRMDFDVPVGVNGDCYDRYLVRVEEMRQSIRIAKQCIE 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ PP R MK +ME LIHHFKL+TEG+HVP GE YAAVE PKG
Sbjct: 302 WL--RKNPGPVMTDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YL+SDG NKPYR KIRAPG+AHL +++ + +GH +AD I+G+ DIVFGE+DR
Sbjct: 360 EFGIYLVSDGANKPYRLKIRAPGFAHLASLDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>gi|171058188|ref|YP_001790537.1| NADH dehydrogenase subunit D [Leptothrix cholodnii SP-6]
gi|218534413|sp|B1Y830|NUOD_LEPCP RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|170775633|gb|ACB33772.1| NADH dehydrogenase I, D subunit [Leptothrix cholodnii SP-6]
Length = 417
Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats.
Identities = 236/418 (56%), Positives = 301/418 (72%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHRGTEKL E+KTF+Q++P
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAESKTFIQSLP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY LA+EKL+GI++P R Q IRV++SEI R+L+HLL + MD
Sbjct: 62 YMDRLDYVSMMCNEHAYCLAIEKLMGIQVPERAQYIRVMFSEITRLLNHLLWLGCHGMDC 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP---------------- 167
GA+ ++ F ERE L YE SG+RMHAAYFRPGGV++D+P
Sbjct: 122 GAMNMLIYCFREREDLFDMYEAVSGARMHAAYFRPGGVYRDLPDVMPQYKVSKIRNAKAM 181
Query: 168 ---------ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
L++ I + FP+ +++ LLT NRI+KQR V IG + E A G +
Sbjct: 182 ARLNENRQGSLLDFIDDFTKRFPTLVDEYETLLTDNRIWKQRTVGIGVLTPERALNLGLT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G MIRGSG AWDLRK+QPY+ Y +DFDIP+G +GD YDRYLVR+ EMR+S +II QC
Sbjct: 242 GAMIRGSGIAWDLRKTQPYDVYDRMDFDIPVGVNGDTYDRYLVRVEEMRQSNRIIEQCSA 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ PP R +MK SME LIHHFKL+TEG+HVP GE YAAVE PKG
Sbjct: 302 WL--RANPGPVITDNHKVAPPSRVEMKTSMEELIHHFKLFTEGFHVPEGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+Y ISDG NKPYR KIRAPG+AHL A++ + +GH +AD AI+G++DIVFGE+DR
Sbjct: 360 EFGIYAISDGANKPYRLKIRAPGFAHLAALDEMSRGHMIADAVAIIGTMDIVFGEIDR 417
>gi|268581941|ref|XP_002645954.1| C. briggsae CBR-GAS-1 protein [Caenorhabditis briggsae]
gi|187033200|emb|CAP27436.1| CBR-GAS-1 protein [Caenorhabditis briggsae AF16]
Length = 482
Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats.
Identities = 230/394 (58%), Positives = 298/394 (75%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+K + +NFGPQHPAAHGVLRL+L+L+GE++ + PHIGLLHR TEKLIE KT+ QA+
Sbjct: 93 EKNLENMILNFGPQHPAAHGVLRLVLKLEGEVIIKAIPHIGLLHRATEKLIEHKTYTQAL 152
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E A++LAVEKLLGI+IP R + IR L E+ RI +H++ +TT A+D
Sbjct: 153 PYFDRLDYVSMMCNEQAWSLAVEKLLGIDIPPRAKYIRTLMGELTRIQNHIMGITTHALD 212
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP W FEEREKL F ER SG+RMHA Y RPGGV D+P L++DI W FP
Sbjct: 213 VGAMTPFFWMFEEREKLFEFSERVSGARMHANYVRPGGVAWDMPIGLMDDIYDWAIKFPE 272
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++++ D+LT NRI+K R ++IG V DA WGF+GVM+RGSG D+RK+QPY+ Y +
Sbjct: 273 RIDELEDMLTENRIWKARTIDIGLVSAADALNWGFTGVMVRGSGIKQDVRKTQPYDAYDQ 332
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++FD+PIG GDCYDRYL R+ EMR+S+ II QC+N++ G + D K+VPPKRA
Sbjct: 333 VEFDVPIGTKGDCYDRYLCRVEEMRQSLNIIHQCLNKM----PTGEIKVDDHKVVPPKRA 388
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK +MESLIHHFK +TEG+ VP G Y +EAPKGEFGVYL++DG KPYRC IRAPG+
Sbjct: 389 EMKENMESLIHHFKFFTEGFQVPPGATYVPIEAPKGEFGVYLVADGTGKPYRCFIRAPGF 448
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL A+ +C +AD+ A++G++DIVFGEVDR
Sbjct: 449 AHLAAIHDVCYMSLIADIVAVIGTMDIVFGEVDR 482
>gi|21450025|ref|NP_659287.1| NADH dehydrogenase subunit 7 [Laminaria digitata]
gi|21425350|emb|CAC87983.1| NADH dehydrogenase subunit 7 [Laminaria digitata]
Length = 398
Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats.
Identities = 255/388 (65%), Positives = 308/388 (79%), Gaps = 4/388 (1%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
FTINFGPQHPAAHGVLRLILEL+GE+V+R DPHIGLLHRGTEKLIE KT+ QA+PYFDRL
Sbjct: 15 FTINFGPQHPAAHGVLRLILELNGEVVQRADPHIGLLHRGTEKLIEAKTYFQALPYFDRL 74
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
DYV+ M QEH YALAVE LL I +P R Q IR+L++EI RIL+HLL V AMDVGA+TP
Sbjct: 75 DYVSMMCQEHTYALAVENLLQISVPKRAQYIRILFAEITRILNHLLAVGCHAMDVGAMTP 134
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
LW FEEREKLM FYER SG+RMHA+YFRPGGV QDI L+ DI + F L+++
Sbjct: 135 FLWAFEEREKLMEFYERVSGARMHASYFRPGGVSQDISIGLINDIFSFAAQFGQRLDEME 194
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
++LT NRI+++R V+IG V ++A WGFSGVM+RG+G WDLRK++PY+ YSEL F
Sbjct: 195 EMLTDNRIWQERLVDIGVVSAQEAIDWGFSGVMLRGTGVRWDLRKNEPYDAYSELSFQGV 254
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
+GK GDCYDRYLVR+ EMR+S+ II QC+N++ G + D KI PP RAD+K+SM
Sbjct: 255 VGKTGDCYDRYLVRVEEMRQSLSIIYQCLNKM----PEGSIKIDDAKISPPSRADVKQSM 310
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
E+LIHHFKLYTEG VP+GE Y A EAPKGEFGVYL+SDG N+PYRCKI+APG++HLQA+
Sbjct: 311 EALIHHFKLYTEGVTVPLGETYTATEAPKGEFGVYLVSDGSNRPYRCKIKAPGFSHLQAL 370
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVDR 396
F+ H LADV I+G+ DIVFGEVDR
Sbjct: 371 NFMANSHMLADVVTIIGTQDIVFGEVDR 398
>gi|120609953|ref|YP_969631.1| NADH dehydrogenase subunit D [Acidovorax citrulli AAC00-1]
gi|218534375|sp|A1TLL9|NUOD_ACIAC RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|120588417|gb|ABM31857.1| NADH dehydrogenase subunit D [Acidovorax citrulli AAC00-1]
Length = 417
Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats.
Identities = 233/418 (55%), Positives = 301/418 (72%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++++NFGPQHPAAHGVLRL+LELDGE+V+R DPHIGLLHR TEKL E KTF+Q++P
Sbjct: 2 AEIKNYSLNFGPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRATEKLAEHKTFIQSLP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY LA+EKLLGI++P+R Q IRV++SEI R+L+HL+ + + D
Sbjct: 62 YMDRLDYVSMMCNEHAYCLAIEKLLGIDVPLRAQYIRVMFSEITRLLNHLMWLGSHGNDC 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
G+ T ++ F ERE L YE SG+RMHAAYFRPGGV++D+P +
Sbjct: 122 GSSTILIYTFREREDLFDMYEAVSGARMHAAYFRPGGVYRDLPDSMPQYQASKVRNAKAI 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP +++ LLT NRI+KQR V+IG V E A G +
Sbjct: 182 EVLNQNRQGSLLDFIDDFTQRFPKCVDEYETLLTDNRIWKQRTVDIGIVTPERALNLGMT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG AWDLRK QPY+ Y ++FDIP+GK GDCYDRYLVR+ EMR+S +II+QCV+
Sbjct: 242 GPMLRGSGIAWDLRKKQPYDAYDRVEFDIPVGKTGDCYDRYLVRVQEMRQSNRIIKQCVD 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L K GPV + K+ PP R MK +ME LIHHFKL+TEG+ VP GE YAAVE PKG
Sbjct: 302 WL--KANPGPVITDNHKVAPPSRESMKSNMEELIHHFKLFTEGFRVPEGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YL+SDG NKPYR KIRAPG+AHL ++ + +GH +AD AI+G++DIVFGE+DR
Sbjct: 360 EFGIYLVSDGANKPYRLKIRAPGFAHLATLDEMARGHMIADAVAIIGTMDIVFGEIDR 417
>gi|294677057|ref|YP_003577672.1| NADH-quinone oxidoreductase subunit D [Rhodobacter capsulatus SB
1003]
gi|6647646|sp|O07310|NUOD_RHOCA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|3282562|gb|AAC24988.1| NUOD [Rhodobacter capsulatus]
gi|294475877|gb|ADE85265.1| NADH-quinone oxidoreductase, D subunit [Rhodobacter capsulatus SB
1003]
Length = 413
Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats.
Identities = 279/394 (70%), Positives = 332/394 (84%), Gaps = 1/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++ R+F INFGPQHPAAHGVLR++LELDGEIVER DPHIGLLHRGTEKL+E++T+LQ
Sbjct: 21 EQSIRNFNINFGPQHPAAHGVLRMVLELDGEIVERADPHIGLLHRGTEKLMESRTYLQNT 80
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYVAPMNQEHA+ LA+EKL G +P R +IRVL+SEIGRIL+HLLNVTTQAMD
Sbjct: 81 PYFDRLDYVAPMNQEHAWCLAIEKLTGTAVPRRASIIRVLFSEIGRILNHLLNVTTQAMD 140
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTPPLWGFEEREKLM+FYERA G+R+HA YFRPGGVHQD+PP+L++DI W +FP
Sbjct: 141 VGALTPPLWGFEEREKLMIFYERACGARLHANYFRPGGVHQDLPPDLIDDIEIWAKAFPQ 200
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+DI LLT NRIFKQRN +I + + WG+SGVM+RGSG AWDLR++QPYECY E
Sbjct: 201 VLDDIEGLLTENRIFKQRNADICIITEAEIEKWGYSGVMVRGSGLAWDLRRAQPYECYDE 260
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF + +GK+GDCYDRYLVRM EMRES KII Q +L + G + + K+ PPKRA
Sbjct: 261 FDFKVAVGKNGDCYDRYLVRMAEMRESTKIILQACAKLRAPDGQGDIL-ARGKLTPPKRA 319
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SME+LIHHFKLYTEG+ VP GEVYAAVEAPKGEFGVYL++DG NKPYR KIRAPGY
Sbjct: 320 EMKTSMEALIHHFKLYTEGFKVPAGEVYAAVEAPKGEFGVYLVADGTNKPYRAKIRAPGY 379
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ+++ + KGHQLADVSAI+G++D+VFGE+DR
Sbjct: 380 AHLQSIDAVAKGHQLADVSAIIGTMDVVFGEIDR 413
>gi|241763291|ref|ZP_04761348.1| NADH dehydrogenase I, D subunit [Acidovorax delafieldii 2AN]
gi|241367566|gb|EER61853.1| NADH dehydrogenase I, D subunit [Acidovorax delafieldii 2AN]
Length = 417
Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats.
Identities = 234/418 (55%), Positives = 303/418 (72%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++++NFGPQHPAAHGVLRL+LELDGE+V+R DPHIGLLHR TEKL E KT++Q++P
Sbjct: 2 AEIKNYSLNFGPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRATEKLAEHKTYIQSLP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M+ EHAY LA+EKLLGIE+P+R Q IRV+++EI R+L+HL+ + + D
Sbjct: 62 YMDRLDYVSMMSNEHAYCLAIEKLLGIEVPVRAQYIRVMFAEITRLLNHLMWLGSHGNDC 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
G+ T ++ F ERE L YE SG+RMHAAYFRPGGV++D+P +
Sbjct: 122 GSSTILIYTFREREDLFDMYEAVSGARMHAAYFRPGGVYRDLPDSMPQYKVSKIKNAKAL 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP +++ LLT NRI+KQR V IG V E A G +
Sbjct: 182 EAMNQNRKGSLLDFIDDFTRRFPGCMDEYETLLTDNRIWKQRTVGIGVVSPERALNLGMT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG AWDLRK+QPY+ Y +DFD+P+GK GDCYDRYLVR+ EMRES +II+QCV+
Sbjct: 242 GPMLRGSGIAWDLRKTQPYDVYDRVDFDVPVGKTGDCYDRYLVRIQEMRESNRIIKQCVD 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + KI PP R MK +ME LIHHFKL+TEG+HVP GE YAAVE PKG
Sbjct: 302 WL--RANPGPVITDNHKIAPPDRESMKSNMEELIHHFKLFTEGFHVPEGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YL+SDG NKPYR KIRAPG+AHL ++ + +GH +AD AI+G++DIVFGE+DR
Sbjct: 360 EFGIYLVSDGANKPYRLKIRAPGFAHLATLDEMARGHMIADAVAIIGTMDIVFGEIDR 417
>gi|121593380|ref|YP_985276.1| NADH dehydrogenase subunit D [Acidovorax sp. JS42]
gi|222110089|ref|YP_002552353.1| NADH dehydrogenase subunit d [Acidovorax ebreus TPSY]
gi|218534380|sp|A1W4M5|NUOD_ACISJ RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|120605460|gb|ABM41200.1| NADH dehydrogenase subunit D [Acidovorax sp. JS42]
gi|221729533|gb|ACM32353.1| NADH dehydrogenase I, D subunit [Acidovorax ebreus TPSY]
Length = 417
Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats.
Identities = 227/418 (54%), Positives = 295/418 (70%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++++NFGPQHPAAHGVLRL+LELDGE+V+R DPHIGLLHR TEKL E KT++Q++P
Sbjct: 2 AEIKNYSLNFGPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRATEKLAEHKTYIQSLP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M E AY LA+EK+LGIE+P+R + IR ++ EI R+L+HL+ + + D
Sbjct: 62 YMDRLDYVSMMCNEQAYCLAIEKMLGIEVPLRAKYIRTMFGEITRLLNHLMWLGSHGNDC 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
G+ T ++ F ERE L YE SG+RMHAAYFRPGGV++D+P +
Sbjct: 122 GSSTILIYTFREREDLFDMYEAVSGARMHAAYFRPGGVYRDLPDSMAQYKVSKIKNAKAI 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP +++ LLT NRI+KQR V IG V E A G +
Sbjct: 182 EELNRNRQGSLLDFIDDFTQRFPKCVDEYETLLTDNRIWKQRTVGIGVVPAERALNLGMT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG AWDLRK QPY+ Y +DFD+P+G GD YDRYLVR+ EMRES +II+QCV+
Sbjct: 242 GPMLRGSGIAWDLRKKQPYDAYDRVDFDVPVGVTGDSYDRYLVRVQEMRESNRIIKQCVD 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + KI PP R MK +ME LIHHFKL+TEG+ VP GE YAAVE PKG
Sbjct: 302 WL--RANPGPVITDNHKIAPPSREAMKSNMEELIHHFKLFTEGFRVPAGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+Y++SDG NKPYR KIRAPG+AHL ++ + +GH LAD AI+G++DIVFGE+DR
Sbjct: 360 EFGIYMVSDGANKPYRLKIRAPGFAHLATLDEMARGHMLADAVAIIGTMDIVFGEIDR 417
>gi|332025397|gb|EGI65564.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial [Acromyrmex echinatior]
Length = 470
Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats.
Identities = 246/394 (62%), Positives = 312/394 (79%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++ ++ +NFGPQHPAAHGVLRLILELDGEIV DPHIGLLHRGTEKLIE KT++QA+
Sbjct: 81 EQTIQNIKLNFGPQHPAAHGVLRLILELDGEIVLNADPHIGLLHRGTEKLIEYKTYMQAL 140
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E ++LA+EKLL I++P+RG+ IRVL++EI RIL+H++ + T A+D
Sbjct: 141 PYFDRLDYVSMMCNEQCFSLAIEKLLNIDVPLRGKYIRVLFAEITRILNHIMGIGTHALD 200
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GALTP W FEEREK+M FYER SG+RMHAAY RPGGV D+P L++DI W + +
Sbjct: 201 IGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDLPLGLMDDIHDWASKYSA 260
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+++ DLLT NRI++QR VNIGTV EDA WGFSGVM+RGSG WDLRK PY+ Y
Sbjct: 261 RLDEVEDLLTDNRIWRQRTVNIGTVTAEDALNWGFSGVMLRGSGIKWDLRKVAPYDVYHL 320
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+DFD+PIG +GDCYDRYL R+ EMR+S++II QC+N + G V D KIVPP+R
Sbjct: 321 MDFDVPIGTNGDCYDRYLCRVAEMRQSLRIIHQCLNEM----PEGEVRCDDAKIVPPRRE 376
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SME+LIHHFKL+T+G+ VP G Y A+EAPKGEFGVYL+SDG +KPYRCKI+APG+
Sbjct: 377 EMKNSMEALIHHFKLFTQGFQVPPGATYTAIEAPKGEFGVYLVSDGSSKPYRCKIKAPGF 436
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL ++ + H LAD+ AI+G+LD+VFGE+DR
Sbjct: 437 AHLACLQHIGPKHFLADIVAIVGTLDVVFGEIDR 470
>gi|167562180|ref|ZP_02355096.1| NADH dehydrogenase subunit D [Burkholderia oklahomensis EO147]
gi|167569425|ref|ZP_02362299.1| NADH dehydrogenase subunit D [Burkholderia oklahomensis C6786]
Length = 417
Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats.
Identities = 239/418 (57%), Positives = 298/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E KTF+Q+VP
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAENKTFIQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EH Y LA+EKLLGI++P R Q IRVL+ EI R+L+HL+ + A+DV
Sbjct: 62 YMDRLDYVSMMVNEHGYVLAIEKLLGIDVPERAQYIRVLFDEITRVLNHLMWIGAHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNEKAL 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP +++ LLT NRI+KQR V IG V E A G +
Sbjct: 182 ARMNETRQGSVLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVTPERAMQLGLT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG AWDLRK QPYE Y LDFDIP+G +GDCYDRYLVR+ EMR+S +I +QC+
Sbjct: 242 GPMLRGSGIAWDLRKKQPYEVYDRLDFDIPVGVNGDCYDRYLVRVEEMRQSTRIAKQCIE 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + KI PP R MK +ME LIHHFKL+TEG+HVP GE YAAVE PKG
Sbjct: 302 WL--RKNPGPVITDNHKIAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGETYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YL+SDG NKPYR KIRAPGYAHL A++ + +GH +AD I+G+ DIVFGEVDR
Sbjct: 360 EFGIYLVSDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEVDR 417
>gi|198284343|ref|YP_002220664.1| NADH dehydrogenase subunit D [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218667952|ref|YP_002427005.1| NADH-quinone oxidoreductase, D subunit [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|218534379|sp|B5EN68|NUOD_ACIF5 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|198248864|gb|ACH84457.1| NADH dehydrogenase I, D subunit [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218520165|gb|ACK80751.1| NADH-quinone oxidoreductase, D subunit [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 417
Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats.
Identities = 243/417 (58%), Positives = 305/417 (73%), Gaps = 27/417 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ +FT+NFGPQHP+AHGVLRL+LELDGE++ER DPHIGLLHR TEKL E KT+LQ +PY
Sbjct: 3 EINNFTMNFGPQHPSAHGVLRLVLELDGEVIERADPHIGLLHRATEKLAENKTYLQNLPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDYV+ + EHAY LAVEKLLG+E+P+R Q IR L+ EI RIL+HLL + A+DVG
Sbjct: 63 MDRLDYVSMLCNEHAYCLAVEKLLGVEVPVRAQYIRTLFDEITRILNHLLWLGAYALDVG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE---------------- 168
A++ L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 123 AMSVFLYCFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPAQMPQYQPSPYRDARRLQ 182
Query: 169 ---------LVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
+++ I + FP+ +++ LLT NRI+KQR V IG V E A GF+G
Sbjct: 183 ELNANRQGSMLDFIEDFARRFPTYVDEYETLLTDNRIWKQRTVGIGVVGPERAIQLGFTG 242
Query: 220 VMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR 279
M+R SG AWDLR++QPY Y++LDFDIP+GK GDCYDRYLVR+ EMR+S +II QCV+
Sbjct: 243 PMLRSSGVAWDLRRTQPYAAYADLDFDIPVGKTGDCYDRYLVRVAEMRQSNRIIVQCVDW 302
Query: 280 LLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGE 339
L + GPV D KI P R +MK SME+LIHHFKL++EG VP GEVYAAVEAPKGE
Sbjct: 303 L--RKNPGPVITDDFKIAAPSREEMKTSMEALIHHFKLFSEGMAVPAGEVYAAVEAPKGE 360
Query: 340 FGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
FG+Y+ISDG NKPYR KIRAPG+ HL AM+ + +GH +ADV AIL ++DIVFGE+DR
Sbjct: 361 FGIYMISDGANKPYRMKIRAPGFPHLAAMDEMARGHMIADVVAILSTMDIVFGEIDR 417
>gi|89053664|ref|YP_509115.1| NADH dehydrogenase subunit D [Jannaschia sp. CCS1]
gi|122499241|sp|Q28T72|NUOD_JANSC RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|88863213|gb|ABD54090.1| NADH dehydrogenase subunit D [Jannaschia sp. CCS1]
Length = 412
Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats.
Identities = 288/394 (73%), Positives = 334/394 (84%), Gaps = 3/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++K R+F +NFGPQHPAAHGVLRL+LELDGEI ER DPHIGLLHRGTEKL+E++T+LQ +
Sbjct: 22 EQKIRNFNLNFGPQHPAAHGVLRLVLELDGEICERCDPHIGLLHRGTEKLMESRTYLQNL 81
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV MNQEHA+ LA+E++ G ++P R QLIRVLY EIGRIL+HLLNVTTQA+D
Sbjct: 82 PYFDRLDYVGTMNQEHAWCLAIERMTGTDVPRRAQLIRVLYCEIGRILNHLLNVTTQALD 141
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTPPLWGFEEREKLM+FYERASG+R+HAAYFRPGGVHQD+PPEL+EDI W FP
Sbjct: 142 VGALTPPLWGFEEREKLMIFYERASGARLHAAYFRPGGVHQDLPPELIEDIDTWAHEFPQ 201
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+DI LL+ NRIFKQRNV+IG V ED WGFSGVM+RGSG AWDLR++QPYECY E
Sbjct: 202 MLDDIDGLLSENRIFKQRNVDIGVVTEEDIQNWGFSGVMVRGSGFAWDLRRAQPYECYDE 261
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+F IP+GK+GDCYDRYL RM EMRES KII Q +L + S K+ PP R
Sbjct: 262 FEFQIPVGKNGDCYDRYLCRMAEMRESTKIIHQACEKLRNEPGE---IMSRGKMSPPSRG 318
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
DMK SME+LIHHFKLYTEG+HVP GE+YA VEAPKGEFGV+L++DG NKPYR K+RAPG+
Sbjct: 319 DMKTSMEALIHHFKLYTEGFHVPEGEIYACVEAPKGEFGVFLVADGTNKPYRAKLRAPGF 378
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQAM++LCKGHQLADVSA+LGSLDIVFGEVDR
Sbjct: 379 AHLQAMDYLCKGHQLADVSAVLGSLDIVFGEVDR 412
>gi|91789113|ref|YP_550065.1| NADH dehydrogenase subunit D [Polaromonas sp. JS666]
gi|122967584|sp|Q127X5|NUOD_POLSJ RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|91698338|gb|ABE45167.1| NADH dehydrogenase subunit D [Polaromonas sp. JS666]
Length = 417
Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats.
Identities = 230/418 (55%), Positives = 301/418 (72%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E+KT++Q++P
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESKTYIQSLP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M+ E AY LA+EKLLG+++PIR Q IRV+Y+EI R+L+HLL + D
Sbjct: 62 YMDRLDYVSMMSNEQAYCLAIEKLLGVDVPIRAQYIRVMYAEITRLLNHLLWLGAHGFDC 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ ++ F ERE L YE SG+RMHAAYFRPGGV++D+P +
Sbjct: 122 GAMNILIYCFREREALFDMYEAVSGARMHAAYFRPGGVYRDLPDTMPQYRVSKIKNAKAI 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP +++ LLT NRI+KQR V +G V E A GF+
Sbjct: 182 AALNENRQGSLLDFIDDFVAKFPRLVDEYETLLTDNRIWKQRTVGVGVVSPERALNLGFT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG AWDLRK QPY+ Y +DFDIP+GK GDCYDRYLVR+ EMR+S +II+QC++
Sbjct: 242 GPMLRGSGFAWDLRKQQPYDVYDRMDFDIPVGKTGDCYDRYLVRIEEMRQSNRIIKQCID 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV S+ K+ P R MK +ME LIHHFKL+TEG+HVP GE YAAVE PKG
Sbjct: 302 WL--RVNPGPVITSNHKVAAPDRESMKTNMEELIHHFKLFTEGFHVPEGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+Y++SDG NKPYR KIR PG+ HL AM+ + +GH +AD A++G++DIVFGE+DR
Sbjct: 360 EFGIYIVSDGANKPYRLKIRPPGFPHLAAMDEMSRGHMIADAVAVIGTMDIVFGEIDR 417
>gi|330817789|ref|YP_004361494.1| NADH dehydrogenase delta subunit [Burkholderia gladioli BSR3]
gi|327370182|gb|AEA61538.1| NADH dehydrogenase delta subunit [Burkholderia gladioli BSR3]
Length = 417
Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats.
Identities = 237/418 (56%), Positives = 297/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E KTF+Q+VP
Sbjct: 2 ADIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAENKTFIQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EH Y LA+EKLLGIE+P R + IRVL+ EI R+L+HL+ + + +DV
Sbjct: 62 YMDRLDYVSMMVNEHGYVLAIEKLLGIEVPERAKYIRVLFDEITRVLNHLMWIGSHGLDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDVMPQYKASKIRNAKAL 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP +++ LLT NRI+KQR V IG V E A G +
Sbjct: 182 EKMNEARQGSVLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQLGLT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG WDLRK QPYE Y LDFDIP+G +GDCYDRYLVR+ EMR+S +I +QC+
Sbjct: 242 GAMLRGSGIEWDLRKKQPYEVYDRLDFDIPVGVNGDCYDRYLVRVEEMRQSCRIAKQCIE 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ PPKR DMK +ME LIHHFKL+TEG+HVP GE YAAVE PKG
Sbjct: 302 WL--RKNPGPVMTDNHKVAPPKRVDMKSNMEDLIHHFKLFTEGFHVPEGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YL+SDG NKPYR KIRAPGYAHL A+ + +GH +AD I+G+ DIVFGE+DR
Sbjct: 360 EFGIYLVSDGANKPYRLKIRAPGYAHLSALNEMARGHMIADAVTIIGTQDIVFGEIDR 417
>gi|255731902|ref|XP_002550875.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor [Candida tropicalis MYA-3404]
gi|240131884|gb|EER31443.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor [Candida tropicalis MYA-3404]
Length = 475
Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats.
Identities = 241/393 (61%), Positives = 301/393 (76%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K R FTINFGPQHPAAHGVLRLILEL GE + R DPH+GLLHRGTEKLIETKT++QA+P
Sbjct: 87 TKIRHFTINFGPQHPAAHGVLRLILELHGEEIVRSDPHVGLLHRGTEKLIETKTYMQALP 146
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M E +ALAVEKLL +EIP+R + IR L+ EI R+L+H ++V T MDV
Sbjct: 147 YFDRLDYVSMMTNEQVFALAVEKLLNVEIPLRAKYIRTLFGEITRVLNHCMSVLTHIMDV 206
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G LTP LWGFEEREKLM FYER SG+R+H+AY RPGGV QD+P L++DI W F
Sbjct: 207 GGLTPFLWGFEEREKLMEFYERVSGARLHSAYVRPGGVSQDLPAGLLDDIYMWATQFGDR 266
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++I +L T NRI+K R + +G V EDA + SGVM+RGSG +D+RKSQPY+ Y +
Sbjct: 267 IDEIEELCTDNRIWKDRTIGVGYVSAEDALNYSLSGVMLRGSGVPFDVRKSQPYDAYDLV 326
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DFDI +G +GDCYDRYL+RM E R+S+++I QC+N + GPV D KI PP RA
Sbjct: 327 DFDIAVGYNGDCYDRYLIRMAEFRQSLRVIFQCINDM----PEGPVKVEDYKISPPSRAV 382
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK ME+LIHHF L+T+GY VP GE Y A+EAPKGE VY++SDG +PYRCKIRAPG+A
Sbjct: 383 MKEDMEALIHHFLLFTKGYAVPAGETYTAIEAPKGEMAVYVVSDGSERPYRCKIRAPGFA 442
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HL A++ + +G+ LAD AI+G++D+VFGEVDR
Sbjct: 443 HLGALDHIARGNLLADAVAIIGTMDLVFGEVDR 475
>gi|300691028|ref|YP_003752023.1| NADH-ubiquinone oxidoreductase subunit D [Ralstonia solanacearum
PSI07]
gi|299078088|emb|CBJ50731.1| NADH-ubiquinone oxidoreductase subunit D [Ralstonia solanacearum
PSI07]
Length = 417
Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats.
Identities = 235/418 (56%), Positives = 299/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E KT++Q VP
Sbjct: 2 ADIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTWIQNVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY +A+E+LLGIE+P+R Q IRV++ EI RI++HL+ + + A+DV
Sbjct: 62 YMDRLDYVSMMVNEHAYVMAIERLLGIEVPLRAQYIRVMFDEITRIMNHLMWIGSHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE L YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMAVFLYAFREREDLFDMYEAVSGARMHAAYYRPGGVYRDLPDSMPQYKASKVRNEKAL 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + D FP +++ LLT NRI+KQR V IG V E A GF+
Sbjct: 182 AALNETRSGSLLDFIEAFTDRFPKYVDEYETLLTDNRIWKQRLVGIGVVSPERALQKGFT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG WD+RK QPYE Y +DFDIP+G +GDCYDRYLVR+ EMR+S +I+RQCV
Sbjct: 242 GPMLRGSGIEWDVRKKQPYEVYDRVDFDIPVGVNGDCYDRYLVRVEEMRQSNRIVRQCVE 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ PP R DMK +ME LIHHFKL+TEG HVP GE YAAVE PKG
Sbjct: 302 WL--RKNQGPVITDNHKVAPPSRVDMKTNMEELIHHFKLFTEGMHVPEGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+Y+ISDG NKPYR KIRAPG+ HL A++ + KGH +AD I+G+ DIVFGE+DR
Sbjct: 360 EFGIYVISDGANKPYRLKIRAPGFVHLAALDEMAKGHMIADAVTIIGTQDIVFGEIDR 417
>gi|167585974|ref|ZP_02378362.1| NADH dehydrogenase subunit D [Burkholderia ubonensis Bu]
Length = 417
Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats.
Identities = 236/418 (56%), Positives = 299/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E+KTF+Q+VP
Sbjct: 2 ADIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESKTFIQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EH Y LA+EKLLGI++P R Q IRVL+ EI R+L+HL+ + A+DV
Sbjct: 62 YMDRLDYVSMMVNEHGYVLAIEKLLGIDVPERAQYIRVLFDEITRVLNHLMWIGAHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNEKAL 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP +++ LLT NRI+KQR V IG V E A G +
Sbjct: 182 AKMNEARQGSVLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQMGLT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG AWDLRK QPYE Y LDFDIP+G +GDCYDRYLVR+ EMR+SV+I +QC+
Sbjct: 242 GPMLRGSGIAWDLRKKQPYEVYDRLDFDIPVGVNGDCYDRYLVRVEEMRQSVRIAKQCIE 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ PP R MK +ME LIHHFKL+TEG+HVP GE YAAVE PKG
Sbjct: 302 WL--RKNPGPVMTDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YL+SDG NKPYR KIRAPG+AHL +++ + +GH +AD I+G+ DIVFGE+DR
Sbjct: 360 EFGIYLVSDGANKPYRLKIRAPGFAHLASLDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>gi|186476761|ref|YP_001858231.1| NADH dehydrogenase subunit D [Burkholderia phymatum STM815]
gi|229891279|sp|B2JDM5|NUOD_BURP8 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|184193220|gb|ACC71185.1| NADH dehydrogenase I, D subunit [Burkholderia phymatum STM815]
Length = 417
Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats.
Identities = 235/418 (56%), Positives = 301/418 (72%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E+KTF+Q+VP
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESKTFIQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EH Y LA+EKLLGI++PIR + IRVL+ E+ R+L+HL+ + A+DV
Sbjct: 62 YMDRLDYVSMMVNEHGYVLAIEKLLGIDVPIRAKYIRVLFDEVTRVLNHLMWIGAHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNTKAL 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + + FP +++ LLT NRI+KQR V IG V E A G +
Sbjct: 182 SKLNENRQGSLLDFIEDFFNRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQMGLT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG WDLRK QPYE Y ++DFDIP+G +GDCYDRYLVR+ EMR+S +I +QC+
Sbjct: 242 GAMLRGSGIEWDLRKKQPYEVYDQMDFDIPVGVNGDCYDRYLVRVEEMRQSTRIAKQCIE 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ PP R MK +ME LIHHFKL+TEG+HVP GE YAAVE PKG
Sbjct: 302 WL--RKNPGPVMTDNHKVAPPSRVGMKSNMEELIHHFKLFTEGFHVPEGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YL+SDG NKPYR KIRAPGYAHL A++ + +GH +AD I+G+ DIVFGEVDR
Sbjct: 360 EFGIYLVSDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEVDR 417
>gi|261856547|ref|YP_003263830.1| NADH dehydrogenase I, D subunit [Halothiobacillus neapolitanus c2]
gi|261837016|gb|ACX96783.1| NADH dehydrogenase I, D subunit [Halothiobacillus neapolitanus c2]
Length = 417
Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats.
Identities = 230/417 (55%), Positives = 296/417 (70%), Gaps = 27/417 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ ++T+NFGPQHP+AHGVLRL+LE+DGE + R DPHIGLLHRGTEKL E+K + Q++ Y
Sbjct: 3 EIANYTLNFGPQHPSAHGVLRLVLEMDGETIIRADPHIGLLHRGTEKLAESKPYNQSIGY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDYV+ M EHAY A+E+L+ +EIP R Q IRV++ EI RIL+HLL + A+D+G
Sbjct: 63 MDRLDYVSMMCNEHAYVRAIEQLVNLEIPERAQYIRVMFDEITRILNHLLWLGAHALDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL--------------- 169
A+T L+ F ERE LM YE SG+R+HA Y+RPGGV +D+P +
Sbjct: 123 AMTVFLYAFREREDLMDCYEAVSGARLHATYYRPGGVARDLPDSMPQYEKSQWHSERDVR 182
Query: 170 ----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
++ + + FP +++ LLT NRI+KQR V+IG V + A GF+G
Sbjct: 183 RMNESRQGSLLDFLEDFTQRFPGYVDEYETLLTDNRIWKQRTVDIGIVPPDRAIALGFTG 242
Query: 220 VMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR 279
M+RGSG WDLRK QPY Y +LDFDIP+G GDCYDRYLVR+ EMR+S +II QC++
Sbjct: 243 PMLRGSGIEWDLRKKQPYAVYDQLDFDIPVGVTGDCYDRYLVRVEEMRQSNRIITQCIDW 302
Query: 280 LLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGE 339
L + GPV + KI PP+R ++K MESLIHHFKL+TEGY +P GE YAAVE PKGE
Sbjct: 303 L--RKNPGPVMVDNRKIAPPRREEVKADMESLIHHFKLFTEGYCLPEGETYAAVEHPKGE 360
Query: 340 FGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
FG+YL+SDG NKPYR KIRAPG+AHL A++ + +GH LADV AI+G+ DIVFGEVDR
Sbjct: 361 FGIYLVSDGANKPYRLKIRAPGFAHLSALDEMSRGHMLADVVAIIGTQDIVFGEVDR 417
>gi|150866110|ref|XP_001385597.2| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor [Scheffersomyces stipitis CBS 6054]
gi|149387366|gb|ABN67568.2| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor [Scheffersomyces stipitis CBS 6054]
Length = 474
Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats.
Identities = 240/393 (61%), Positives = 300/393 (76%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K R FTINFGPQHPAAHGVLRLILEL GE + R DPH+GLLHRGTEKLIE+KT++QA+P
Sbjct: 86 SKIRHFTINFGPQHPAAHGVLRLILELHGEEIVRADPHVGLLHRGTEKLIESKTYMQALP 145
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M E +ALAVEKLL +EIP+R + IR L+ EI RIL+H ++V + MDV
Sbjct: 146 YFDRLDYVSMMTNELVFALAVEKLLNVEIPLRAKYIRTLFGEITRILNHCMSVLSHIMDV 205
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G LTP LWGFEEREKLM FYER SG+R+H AY RPGGV QD+P L++DI W F
Sbjct: 206 GGLTPFLWGFEEREKLMEFYERVSGARLHTAYVRPGGVSQDLPVGLLDDIYMWATQFGDR 265
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ +L+T NRI+K R V++G V EDA + SGVM+RGSG +D+RKSQPY+ Y +
Sbjct: 266 IDETEELVTDNRIWKDRTVDVGVVSAEDALNYSLSGVMLRGSGIPFDIRKSQPYDAYDLV 325
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DFDI +G +GDCYDRYL+RM E R+S++II QC+N + GPV D KI PP R+
Sbjct: 326 DFDIAVGMNGDCYDRYLIRMAEFRQSLRIIFQCINDI----PEGPVKVEDYKISPPPRSV 381
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK ME+LIHHF L+T+GY VP GE Y A+EAPKGE VY++SDG +PYRCKIRAPG+A
Sbjct: 382 MKEDMEALIHHFLLFTKGYAVPQGETYTAIEAPKGEMAVYVVSDGSERPYRCKIRAPGFA 441
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HL A + + +G+ LAD AI+G++D+VFGEVDR
Sbjct: 442 HLGAFDHISRGNLLADAVAIIGTMDLVFGEVDR 474
>gi|325267317|ref|ZP_08133979.1| NADH-quinone oxidoreductase subunit D [Kingella denitrificans ATCC
33394]
gi|324981254|gb|EGC16904.1| NADH-quinone oxidoreductase subunit D [Kingella denitrificans ATCC
33394]
Length = 418
Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats.
Identities = 248/418 (59%), Positives = 307/418 (73%), Gaps = 26/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K R++TINFGPQHPAAHGVLR+ILELDGE + R DPHIGLLHRGTEKL ETKT+LQA+P
Sbjct: 2 AKLRNYTINFGPQHPAAHGVLRMILELDGEQIVRADPHIGLLHRGTEKLAETKTYLQALP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M E AY LAVEKLLG+EIPIR + IR +++E+ RIL+HL+ V + A+D+
Sbjct: 62 YMDRLDYVSMMVNEQAYCLAVEKLLGLEIPIRAKYIRTMFAEVTRILNHLMGVGSHALDI 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP---------------- 167
GA+T L+ F +RE+LM YE SG+RMHAAYFR GGV++D+P
Sbjct: 122 GAMTAILYAFRDREELMDLYEAVSGARMHAAYFRIGGVYRDLPDFMPKYEKSKFRSAKVL 181
Query: 168 ---------ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
+++ I +C+ FP ++ + LLT NRI+KQR V IG V E A GF+
Sbjct: 182 KELNASREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERALQKGFT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
GVM+RGSG WD+RK QPYE Y ++DFDIP+G +GDCYDRYL RM EMR+SV+II+QC +
Sbjct: 242 GVMLRGSGVEWDVRKKQPYEVYDQIDFDIPVGVNGDCYDRYLCRMAEMRQSVRIIKQCAD 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + PV + K+ PPKR +MK+ ME LIHHFKL+TEG HVP GE Y AVE PKG
Sbjct: 302 WLRANPGL-PVITDNHKVAPPKRTEMKQGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKG 360
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFGVY+ISDG NKPYR KIRAPG+AHLQ M+ + +GH LADV AI+G+ DIVFGEVDR
Sbjct: 361 EFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMARGHLLADVVAIIGTQDIVFGEVDR 418
>gi|160900609|ref|YP_001566191.1| NADH dehydrogenase subunit D [Delftia acidovorans SPH-1]
gi|218534404|sp|A9BNB1|NUOD_DELAS RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|160366193|gb|ABX37806.1| NADH dehydrogenase I, D subunit [Delftia acidovorans SPH-1]
Length = 417
Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats.
Identities = 237/418 (56%), Positives = 302/418 (72%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++++NFGPQHPAAHGVLRL+LELDGE+V+R DPHIGLLHR TEKL E+KT++Q++P
Sbjct: 2 AEIKNYSLNFGPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRATEKLAESKTYIQSLP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY LA+EKLLGIE+PIR Q IRV+YSEI RI++HL+ + + D
Sbjct: 62 YMDRLDYVSMMCNEHAYCLAIEKLLGIEVPIRAQYIRVMYSEITRIMNHLMWLGSSGNDA 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
G+ T ++ F ERE LM YE SG+RMHAAYFRPGGV++D+P +
Sbjct: 122 GSSTTLIYTFREREDLMDMYEAVSGARMHAAYFRPGGVYRDLPDTMPQYKASKVRNARSV 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP ++ LLT NRI+KQRNV+IG V E A G +
Sbjct: 182 EIMNRNRHGSLLDFIDDFTQRFPKCADEYETLLTDNRIWKQRNVDIGVVTAERAMNLGLT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+R SG AWD+RKSQPYE Y +DFD+P+GK GDCYDRYLVR+ EMR+S +II+QCV+
Sbjct: 242 GPMLRASGVAWDMRKSQPYEVYDRMDFDVPVGKTGDCYDRYLVRVAEMRQSNRIIKQCVD 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + KI PP R MK +ME LIHHFKL+TEG+ VP GE YAA+E PKG
Sbjct: 302 WL--RANPGPVIVDNHKIAPPPREGMKSNMEELIHHFKLFTEGFRVPEGEAYAAIEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+Y++SDG NKPYR KIR PG+A+L AM+ LC+GH LAD +L +LDIVFG+VDR
Sbjct: 360 EFGIYIVSDGANKPYRLKIRPPGFANLSAMDELCRGHMLADAVMVLSTLDIVFGDVDR 417
>gi|114560868|ref|XP_001173621.1| PREDICTED: NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) isoform 2 [Pan troglodytes]
Length = 384
Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats.
Identities = 246/388 (63%), Positives = 309/388 (79%), Gaps = 4/388 (1%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
T+NFGPQHPAAHGVLRL++EL GE+V + DPHIGLLHRGTEKLIE KT+LQA+PYFDRL
Sbjct: 1 MTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRL 60
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
DYV+ M E AY+LAVEKLL I P R Q IRVL+ EI R+L+H++ VTT A+D+GA+TP
Sbjct: 61 DYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTP 120
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
W FEEREK+ FYER SG+RMHAAY RPGGVHQD+P L++DI + +F L+++
Sbjct: 121 FFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDELE 180
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
+LLT NRI++ R ++IG V E+A +GFSGVM+RGSG WDLRK+QPY+ Y +++FD+P
Sbjct: 181 ELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVP 240
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
+G GDCYDRYL R+ EMR+S++II QC+N++ G + D K+ PPKRA+MK SM
Sbjct: 241 VGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKM----PPGEIKVDDAKVSPPKRAEMKTSM 296
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
ESLIHHFKLYTEGY VP G Y A+EAPKGEFGVYL+SDG ++PYRCKI+APG+AHL +
Sbjct: 297 ESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGL 356
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 357 DKMSKGHMLADVVAIIGTQDIVFGEVDR 384
>gi|115352335|ref|YP_774174.1| NADH dehydrogenase subunit D [Burkholderia ambifaria AMMD]
gi|122322644|sp|Q0BDD3|NUOD_BURCM RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|115282323|gb|ABI87840.1| NADH dehydrogenase subunit D [Burkholderia ambifaria AMMD]
Length = 417
Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats.
Identities = 232/418 (55%), Positives = 300/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E+KTF+Q+VP
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESKTFIQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EH Y LA+E+LLGI++P R Q IRVL+ EI R+L+HL+ + A+DV
Sbjct: 62 YMDRLDYVSMMVNEHGYVLAIERLLGIDVPERAQYIRVLFDEITRVLNHLMWIGAHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNEKAL 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP +++ LLT NRI+KQR V IG V E A G +
Sbjct: 182 ARMNEARSGSVLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQMGLT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG AWDLRK QPYE Y +DFD+P+G +GDCYDRYLVR+ EMR+S++I +QC+
Sbjct: 242 GPMLRGSGIAWDLRKKQPYEVYDRMDFDVPVGVNGDCYDRYLVRVEEMRQSIRIAKQCIE 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ PP R MK +ME LIHHFKL+TEG+HVP GE YAAVE PKG
Sbjct: 302 WL--RKNPGPVMTDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YL+SDG NKPYR KIRAPG+AHL +++ + +GH +AD I+G+ DIVFGE+DR
Sbjct: 360 EFGIYLVSDGANKPYRLKIRAPGFAHLASLDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>gi|126736068|ref|ZP_01751812.1| NADH dehydrogenase I, D subunit [Roseobacter sp. CCS2]
gi|126714625|gb|EBA11492.1| NADH dehydrogenase I, D subunit [Roseobacter sp. CCS2]
Length = 412
Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats.
Identities = 286/395 (72%), Positives = 334/395 (84%), Gaps = 3/395 (0%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
D+++ R+F INFGPQHPAAHGVLRL+LELDGEIVER DPHIGLLHRGTEKL+E++T+LQ
Sbjct: 21 DEQQIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQN 80
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+PY DRLDYVAPMNQEHA+ LA+E+L G E+P R LIRVLYSEIGRILSHLLNVTTQAM
Sbjct: 81 LPYLDRLDYVAPMNQEHAWCLAIERLTGTEVPRRASLIRVLYSEIGRILSHLLNVTTQAM 140
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
DVGALTPPLWGFEEREKLM+FYERA G+R+HAAYFRPGGVHQD+P +LVEDI W FP
Sbjct: 141 DVGALTPPLWGFEEREKLMIFYERACGARLHAAYFRPGGVHQDLPDQLVEDIDTWAIEFP 200
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
L+DI LLT NRIFKQRN +IG V ED WGFSGVM+RGSG AWDLR++QPYECY
Sbjct: 201 KVLDDIDGLLTENRIFKQRNADIGIVTEEDIQDWGFSGVMVRGSGLAWDLRRAQPYECYD 260
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
E +F +P+GK+GDCYDRYL RM EMR+S IIRQ +L + + K+ PP R
Sbjct: 261 EFEFQVPVGKNGDCYDRYLCRMEEMRQSTHIIRQACEKLRHEKGDV---MARGKMTPPTR 317
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+MK SME+LIHHFKLYTEG+HVP GEVYAAVEAPKGEFGVYL++DG N+PYR K+RAPG
Sbjct: 318 GEMKTSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKGEFGVYLVADGTNQPYRAKLRAPG 377
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Y HLQAM+++CKGHQLADVSAI+G++D+VFGE+DR
Sbjct: 378 YLHLQAMDYICKGHQLADVSAIIGTMDVVFGEIDR 412
>gi|74317163|ref|YP_314903.1| NADH dehydrogenase subunit D [Thiobacillus denitrificans ATCC
25259]
gi|123611998|sp|Q3SJQ4|NUOD_THIDA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|74056658|gb|AAZ97098.1| NADH dehydrogenase I chain D [Thiobacillus denitrificans ATCC
25259]
Length = 417
Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats.
Identities = 244/418 (58%), Positives = 307/418 (73%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ R++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E KTFLQA+P
Sbjct: 2 AEIRNYTMNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEHKTFLQALP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY +A+EKLLGIE+P R Q IRV++ EI R+L+HLL + A+DV
Sbjct: 62 YMDRLDYVSMMVNEHAYVMAIEKLLGIEVPERAQYIRVMFDEITRVLNHLLWLGAHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+T L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMTVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDRMPQYQAQHTRNESTM 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP+ +++ LLT NRI+KQR V IG V E A GF+
Sbjct: 182 KSMNANRQGSLLDFIEDFTTRFPAYVDEYETLLTDNRIWKQRTVGIGVVAPERALALGFT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG WDLRK QPYE Y +DFDIP+G +GDCYDRYLVR+ EMR+S +IIRQCV+
Sbjct: 242 GPMLRGSGVEWDLRKKQPYEVYERMDFDIPVGTNGDCYDRYLVRIEEMRQSNRIIRQCVD 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GP+ + K+ PP R DMK++ME LIHHFKL+TEG HVP GE YAAVE PKG
Sbjct: 302 WL--RKNPGPIMVDNHKVSPPPRVDMKQNMEELIHHFKLFTEGMHVPAGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YL+SDG NKPYR KIRAPG+AHL+A++ + +GH +ADV AI+G+ DIVFGE+DR
Sbjct: 360 EFGIYLVSDGANKPYRMKIRAPGFAHLEALDEMSRGHMIADVVAIIGTQDIVFGEIDR 417
>gi|119384979|ref|YP_916035.1| NADH dehydrogenase subunit D [Paracoccus denitrificans PD1222]
gi|218527938|sp|A1B495|NUOD_PARDP RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I, subunit 4; AltName: Full=NADH
dehydrogenase I, subunit D; AltName: Full=NADH-quinone
oxidoreductase subunit 4; Short=NQO4; AltName:
Full=NDH-1, subunit 4; AltName: Full=NDH-1, subunit D
gi|119374746|gb|ABL70339.1| NADH dehydrogenase subunit D [Paracoccus denitrificans PD1222]
Length = 412
Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats.
Identities = 276/394 (70%), Positives = 332/394 (84%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++ R+F INFGPQHPAAHGVLR++LELDGEIVER DPHIGLLHRGTEKL+E++T+LQ +
Sbjct: 21 EQSIRNFNINFGPQHPAAHGVLRMVLELDGEIVERADPHIGLLHRGTEKLMESRTYLQNL 80
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DRLDYVAPMNQEHA+ LA+E+L G IP R LIRVLYSEIGRIL+HL+ VTT AMD
Sbjct: 81 PYLDRLDYVAPMNQEHAWCLAIERLTGTVIPRRASLIRVLYSEIGRILNHLMGVTTGAMD 140
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTPPLWGFE RE+LM+FYERA G+R+HAAYFRPGGVHQD+PP+L++DI WC+ FP
Sbjct: 141 VGALTPPLWGFEAREELMIFYERACGARLHAAYFRPGGVHQDLPPDLLDDIEEWCERFPK 200
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++D+ LLT NRIFKQR V+IG V DA WG++GVM+RGSG AWDLR+SQPYECY E
Sbjct: 201 LVDDLDTLLTENRIFKQRLVDIGIVTEADALDWGYTGVMVRGSGLAWDLRRSQPYECYDE 260
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF IP+G++GDCYDRYL RM EMRES KI++Q V +L G V + K+ PP+RA
Sbjct: 261 FDFQIPVGRNGDCYDRYLCRMAEMRESCKIMQQAVQKLRA-EPAGDVL-ARGKLTPPRRA 318
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MKR MESLIHHFKLYTEG+ VP GEVYAAVEAPKGEFGVYL++DG NKP+R K+RAPG+
Sbjct: 319 EMKRDMESLIHHFKLYTEGFKVPAGEVYAAVEAPKGEFGVYLVADGTNKPWRAKLRAPGF 378
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ+++++ +GH LADV AI+ +LDIVFGEVDR
Sbjct: 379 AHLQSIDWMSRGHMLADVPAIIATLDIVFGEVDR 412
>gi|241957339|ref|XP_002421389.1| NADH-ubiquinone oxidoreductase subunit, mitochondrial precursor,
putative; respiratory chain complex I subunit, putative
[Candida dubliniensis CD36]
gi|223644733|emb|CAX40724.1| NADH-ubiquinone oxidoreductase subunit, mitochondrial precursor,
putative [Candida dubliniensis CD36]
Length = 479
Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats.
Identities = 240/393 (61%), Positives = 301/393 (76%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K R FTINFGPQHPAAHGVLRLILEL GE + R DPH+GLLHRGTEKLIE+KT++QA+P
Sbjct: 91 TKIRHFTINFGPQHPAAHGVLRLILELHGEEIVRSDPHVGLLHRGTEKLIESKTYMQALP 150
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M E +ALAVEKLL +E+P+R + IR L+ EI R+L+H ++V T MDV
Sbjct: 151 YFDRLDYVSMMTNELVFALAVEKLLNVEVPLRAKYIRTLFGEITRVLNHCMSVLTHIMDV 210
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G LTP LWGFEEREKLM FYER SG+R+H AYFRPGGV QD+P L++DI W F
Sbjct: 211 GGLTPFLWGFEEREKLMEFYERVSGARLHTAYFRPGGVSQDLPAGLLDDIYMWATQFGDR 270
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
++++ +L T NRI+K R + +G V EDA + SGVM+RGSG +D+RKSQPY+ Y +
Sbjct: 271 IDEVEELCTDNRIWKDRTIGVGVVSAEDALNYSLSGVMLRGSGIPFDIRKSQPYDAYDLV 330
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DFDI +G +GDCYDRYL+RM E R+S++II QC+N + GPV D KI PP R+
Sbjct: 331 DFDIAVGINGDCYDRYLIRMAEFRQSLRIIFQCINDI----PEGPVKVEDYKISPPPRSL 386
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK ME+LIHHF L+T+GY VP GE Y A+EAPKGE GVY++SDG +PYRCKIRAPG+A
Sbjct: 387 MKEDMEALIHHFLLFTKGYAVPQGETYTAIEAPKGEMGVYVVSDGSERPYRCKIRAPGFA 446
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HL A + + +G+ LAD AI+G++D+VFGEVDR
Sbjct: 447 HLGAFDHIARGNLLADAVAIIGTMDLVFGEVDR 479
>gi|217970159|ref|YP_002355393.1| NADH dehydrogenase subunit D [Thauera sp. MZ1T]
gi|217507486|gb|ACK54497.1| NADH dehydrogenase I, D subunit [Thauera sp. MZ1T]
Length = 417
Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats.
Identities = 245/418 (58%), Positives = 312/418 (74%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ R++TINFGPQHP+AHGVLRL+LELDGE+VER DPHIGLLHRGTEKL ET+T++Q+VP
Sbjct: 2 AEIRNYTINFGPQHPSAHGVLRLVLELDGEVVERADPHIGLLHRGTEKLAETRTWVQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY +A+EKLLG+E+P+R Q IRV++ EI R+L+HLLN+ T A+D+
Sbjct: 62 YMDRLDYVSMMCNEHAYCMAIEKLLGVEVPLRAQYIRVMFDEITRVLNHLLNIGTHALDI 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE--------------- 168
GA+T L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P
Sbjct: 122 GAMTMVLYTFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDRMPKYEVNKFKNEKTV 181
Query: 169 ----------LVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
+++ + + + FP+ ++ LLT NRI+KQR V IG V E A WGF+
Sbjct: 182 RELNANREGSMLDFLEDFTNRFPTYCDEYETLLTDNRIWKQRTVGIGVVSPEQALAWGFT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG AWDLRK QPYE Y +DFD+PIGK+GDCYDRYL RM EMR+S +II+QC++
Sbjct: 242 GPMLRGSGIAWDLRKKQPYEVYDRVDFDVPIGKNGDCYDRYLCRMEEMRQSNRIIKQCID 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ PP R MK +ME LIHHFKL+TEG HVP GEVYAAVE PKG
Sbjct: 302 WL--RKNSGPVITDNHKVAPPSREAMKTNMEELIHHFKLFTEGMHVPKGEVYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFGVY +SDG NKPYR K+RAPG+AHL AM+ + +GH +ADV AI+G++D+VFGE+DR
Sbjct: 360 EFGVYAVSDGANKPYRLKLRAPGFAHLAAMDDIARGHMIADVVAIIGTMDVVFGEIDR 417
>gi|294083714|ref|YP_003550471.1| NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Candidatus
Puniceispirillum marinum IMCC1322]
gi|292663286|gb|ADE38387.1| NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Candidatus
Puniceispirillum marinum IMCC1322]
Length = 392
Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats.
Identities = 262/396 (66%), Positives = 326/396 (82%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + + + T+NFGPQHPAAHGVLRL+LE+DGE++ER DPHIGLLHRGTEKLIE KT+LQ
Sbjct: 1 MAEMQIKPITMNFGPQHPAAHGVLRLVLEMDGEVIERADPHIGLLHRGTEKLIEHKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+PMNQEHA+AL++EK L I++P R Q IRVLY EIGRIL+HLLN+TT A
Sbjct: 61 ALPYFDRLDYVSPMNQEHAWALSIEKALAIDVPRRAQFIRVLYCEIGRILNHLLNLTTFA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+DVGA+TP LWGFEERE+LM FYERA G+R+HAAYFRPGGVHQD+P L+++IG W F
Sbjct: 121 IDVGAMTPLLWGFEEREQLMGFYERACGARLHAAYFRPGGVHQDLPTGLLDEIGDWAHKF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
PS ++D+ LLT NRIFKQR V+IG + ++A G +G +R SG WDLRKSQPY+ Y
Sbjct: 181 PSFIDDMETLLTENRIFKQRTVDIGVMSEKEALDLGMTGPCLRASGLPWDLRKSQPYDVY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+E+DFD+P+GK GDCY RYLVR+ EMR+S++II QC+ + GPV A + K+ PP
Sbjct: 241 AEMDFDVPMGKTGDCYARYLVRIEEMRQSLRIIHQCIAEM----PEGPVLAENNKVTPPH 296
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R+DMK SME+LIHHFKLYTEG+HVP GE Y AVEAPKGEFGVYL++DG N+PYRCKIRAP
Sbjct: 297 RSDMKNSMEALIHHFKLYTEGFHVPEGESYTAVEAPKGEFGVYLVADGSNRPYRCKIRAP 356
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ + A+++L +GH LAD AI+GSLD+VFGE+DR
Sbjct: 357 GFYFMAAVDYLSRGHMLADSVAIIGSLDVVFGEIDR 392
>gi|193632011|ref|XP_001947632.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial-like [Acyrthosiphon pisum]
Length = 462
Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats.
Identities = 238/394 (60%), Positives = 306/394 (77%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ ++ TINFGPQHPAAHGVLRL+LEL GE+V R DPHIGLLHRGTEKLIE KT+ QA+
Sbjct: 73 EREVKNMTINFGPQHPAAHGVLRLVLELAGEVVIRADPHIGLLHRGTEKLIEYKTYTQAL 132
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E Y+LAVEKLL I+IP+R + IR L++EI R+L+H++ + T A+D
Sbjct: 133 PYFDRLDYVSMMCNEQCYSLAVEKLLNIDIPLRAKYIRTLFAEITRLLNHIMAIGTHALD 192
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA+TP W FEEREK+M FYER SG+RMHAAY RPGGV QDIP L++DI + F
Sbjct: 193 IGAMTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSQDIPLGLMDDIYQFSSKFGE 252
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+++ D+LT N I+ R +IG V EDA GFSGVM+RGSG WDLR++QPY+ Y
Sbjct: 253 RIDETEDMLTNNGIWIARTRDIGVVSAEDALNLGFSGVMLRGSGIKWDLRQTQPYDAYHL 312
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+DFD+PIG GDCYDRYL R+ EMR+S++II QC+N++ G + D K+ P R+
Sbjct: 313 VDFDVPIGARGDCYDRYLCRVAEMRQSLRIIEQCLNQMPA----GEIKTDDMKVSTPSRS 368
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SME+LIHHFKL+T+GY VP G Y A+EAPKGEFGVYL+SDG +KPYRCKI+APG+
Sbjct: 369 EMKNSMEALIHHFKLFTQGYQVPPGATYTAIEAPKGEFGVYLVSDGTSKPYRCKIKAPGF 428
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL A++ + K H LAD+ AI+G+LD+VFGE+DR
Sbjct: 429 AHLAALDKIGKKHFLADIVAIIGTLDVVFGEIDR 462
>gi|310816713|ref|YP_003964677.1| NADH dehydrogenase I, D subunit [Ketogulonicigenium vulgare Y25]
gi|308755448|gb|ADO43377.1| NADH dehydrogenase I, D subunit [Ketogulonicigenium vulgare Y25]
Length = 404
Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats.
Identities = 274/395 (69%), Positives = 328/395 (83%), Gaps = 3/395 (0%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
D +K R+F INFGPQHPAAHGVLRL+LELDGEIVER DPH+GLLHRGTEKL+E++T+LQ
Sbjct: 13 DLEKVRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHVGLLHRGTEKLMESRTYLQN 72
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+PY DRLDYVAPMNQEHA+ LA+E+L GIE+P R LIRVL+ EIGR+L+HL+NVTT AM
Sbjct: 73 LPYLDRLDYVAPMNQEHAWCLAIERLAGIEVPRRASLIRVLFCEIGRVLNHLMNVTTGAM 132
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
DVGALTPPLWGFEEREKLM+FYERA G+R+HAAYFRPGGVHQD+PP+L+ DI W FP
Sbjct: 133 DVGALTPPLWGFEEREKLMLFYERACGARLHAAYFRPGGVHQDLPPDLIADIDAWAIGFP 192
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
L+++S LL +RIFKQR V+IG + ++A GFSGVM+RGSG WDLR++QPYECY
Sbjct: 193 QFLDELSGLLVESRIFKQRLVDIGNISADEAIAMGFSGVMVRGSGLEWDLRRAQPYECYD 252
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
E +FDIP+G GDCYDR+L R+ EM ES KIIRQ +L + K+ PPKR
Sbjct: 253 EFEFDIPVGTKGDCYDRFLCRVAEMHESTKIIRQACEKLRNCPGEV---MAYGKLAPPKR 309
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
A+MK SME+LIHHFKLY+EG+H+P GEVYAAVEAPKGEFGVYL+SDG NKPYR K+RAPG
Sbjct: 310 AEMKTSMEALIHHFKLYSEGFHLPAGEVYAAVEAPKGEFGVYLVSDGSNKPYRAKLRAPG 369
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AHLQAM+ + KGH LADV+AI+ +LDIVFGEVDR
Sbjct: 370 FAHLQAMDHMTKGHLLADVTAIIATLDIVFGEVDR 404
>gi|53718850|ref|YP_107836.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei K96243]
gi|53725816|ref|YP_103431.1| NADH dehydrogenase subunit D [Burkholderia mallei ATCC 23344]
gi|67642189|ref|ZP_00440949.1| NADH dehydrogenase subunit D [Burkholderia mallei GB8 horse 4]
gi|76808606|ref|YP_332847.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei 1710b]
gi|121599344|ref|YP_992472.1| NADH dehydrogenase subunit D [Burkholderia mallei SAVP1]
gi|124383601|ref|YP_001026725.1| NADH dehydrogenase subunit D [Burkholderia mallei NCTC 10229]
gi|126439204|ref|YP_001058341.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei 668]
gi|126450476|ref|YP_001079990.1| NADH dehydrogenase subunit D [Burkholderia mallei NCTC 10247]
gi|126453345|ref|YP_001065580.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei 1106a]
gi|134283955|ref|ZP_01770651.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
305]
gi|167000365|ref|ZP_02266183.1| NADH-quinone oxidoreductase, D subunit [Burkholderia mallei PRL-20]
gi|167718846|ref|ZP_02402082.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei DM98]
gi|167737855|ref|ZP_02410629.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei 14]
gi|167815039|ref|ZP_02446719.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei 91]
gi|167823455|ref|ZP_02454926.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei 9]
gi|167845007|ref|ZP_02470515.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei B7210]
gi|167893548|ref|ZP_02480950.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei 7894]
gi|167901994|ref|ZP_02489199.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei NCTC 13177]
gi|167910230|ref|ZP_02497321.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei 112]
gi|167918263|ref|ZP_02505354.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei BCC215]
gi|217420099|ref|ZP_03451605.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
576]
gi|226195366|ref|ZP_03790955.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
Pakistan 9]
gi|237811585|ref|YP_002896036.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei MSHR346]
gi|242315234|ref|ZP_04814250.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
1106b]
gi|254175461|ref|ZP_04882121.1| NADH dehydrogenase I, D subunit [Burkholderia mallei ATCC 10399]
gi|254181184|ref|ZP_04887781.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
1655]
gi|254190547|ref|ZP_04897054.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
Pasteur 52237]
gi|254195193|ref|ZP_04901622.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
S13]
gi|254202107|ref|ZP_04908470.1| NADH-quinone oxidoreductase, D subunit [Burkholderia mallei FMH]
gi|254207437|ref|ZP_04913787.1| NADH-quinone oxidoreductase, D subunit [Burkholderia mallei JHU]
gi|254261360|ref|ZP_04952414.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
1710a]
gi|254298536|ref|ZP_04965988.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
406e]
gi|254359859|ref|ZP_04976129.1| NADH-quinone oxidoreductase, D subunit [Burkholderia mallei
2002721280]
gi|81380046|sp|Q63VN0|NUOD_BURPS RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|81604654|sp|Q62IN8|NUOD_BURMA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|123599738|sp|Q3JUA6|NUOD_BURP1 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|229891274|sp|A3MIA4|NUOD_BURM7 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|229891275|sp|A2S456|NUOD_BURM9 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|229891276|sp|A1V2L9|NUOD_BURMS RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|229891277|sp|A3NTA9|NUOD_BURP0 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|229891278|sp|A3N7M0|NUOD_BURP6 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|52209264|emb|CAH35209.1| NADH dehydrogenase I chain D [Burkholderia pseudomallei K96243]
gi|52429239|gb|AAU49832.1| NADH dehydrogenase I, D subunit [Burkholderia mallei ATCC 23344]
gi|76578059|gb|ABA47534.1| NADH dehydrogenase I, D subunit [Burkholderia pseudomallei 1710b]
gi|121228154|gb|ABM50672.1| NADH dehydrogenase I, D subunit [Burkholderia mallei SAVP1]
gi|124291621|gb|ABN00890.1| NADH dehydrogenase I, D subunit [Burkholderia mallei NCTC 10229]
gi|126218697|gb|ABN82203.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
668]
gi|126226987|gb|ABN90527.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
1106a]
gi|126243346|gb|ABO06439.1| NADH dehydrogenase I, D subunit [Burkholderia mallei NCTC 10247]
gi|134244744|gb|EBA44842.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
305]
gi|147746354|gb|EDK53431.1| NADH-quinone oxidoreductase, D subunit [Burkholderia mallei FMH]
gi|147751331|gb|EDK58398.1| NADH-quinone oxidoreductase, D subunit [Burkholderia mallei JHU]
gi|148029099|gb|EDK87004.1| NADH-quinone oxidoreductase, D subunit [Burkholderia mallei
2002721280]
gi|157808218|gb|EDO85388.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
406e]
gi|157938222|gb|EDO93892.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
Pasteur 52237]
gi|160696505|gb|EDP86475.1| NADH dehydrogenase I, D subunit [Burkholderia mallei ATCC 10399]
gi|169651941|gb|EDS84634.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
S13]
gi|184211722|gb|EDU08765.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
1655]
gi|217397403|gb|EEC37419.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
576]
gi|225932568|gb|EEH28566.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
Pakistan 9]
gi|237506696|gb|ACQ99014.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei MSHR346]
gi|238523285|gb|EEP86724.1| NADH dehydrogenase subunit D [Burkholderia mallei GB8 horse 4]
gi|242138473|gb|EES24875.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
1106b]
gi|243063699|gb|EES45885.1| NADH-quinone oxidoreductase, D subunit [Burkholderia mallei PRL-20]
gi|254220049|gb|EET09433.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
1710a]
Length = 417
Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats.
Identities = 239/418 (57%), Positives = 298/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E KTF+Q+VP
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAENKTFIQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EH Y LA+EKLLGIE+P R Q IRVL+ EI R+L+HL+ + A+DV
Sbjct: 62 YMDRLDYVSMMVNEHGYVLAIEKLLGIEVPERAQYIRVLFDEITRVLNHLMWIGAHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPEAMPQYKASKIRNERAL 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP +++ LLT NRI+KQR V IG V E A G +
Sbjct: 182 AKMNEARSGSVLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQLGLT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G MIRGSG AWDLRK QPYE Y LDFDIP+G +GDCYDRYLVR+ EMR+S +I +QC+
Sbjct: 242 GPMIRGSGIAWDLRKKQPYEVYDRLDFDIPVGVNGDCYDRYLVRVEEMRQSTRIAKQCIE 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ PP R MK +ME LIHHFKL+TEG+HVP GE YAAVE PKG
Sbjct: 302 WL--RKNPGPVITDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGETYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YL+SDG NKPYR KIRAPGYAHL A++ + +GH +AD I+G+ DIVFGE+DR
Sbjct: 360 EFGIYLVSDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>gi|84508588|ref|YP_448636.1| NADH dehydrogenase subunit 7 [Fucus vesiculosus]
gi|39653311|gb|AAR29330.1| NADH dehydrogenase subunit 7 [Fucus vesiculosus]
Length = 398
Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats.
Identities = 255/390 (65%), Positives = 308/390 (78%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+ FTINFGPQHPAAHGVLRLILEL+GE+V+R DPHIGLLHRGTEKLIE KT++QA+PYFD
Sbjct: 13 QHFTINFGPQHPAAHGVLRLILELNGEVVQRADPHIGLLHRGTEKLIEAKTYVQALPYFD 72
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYV+ M QEH Y LAVE LL + IP R Q IRVL++EI RIL+HLL V AMDVGA+
Sbjct: 73 RLDYVSMMCQEHTYVLAVENLLQVSIPRRAQYIRVLFAEITRILNHLLAVGCHAMDVGAM 132
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP LW FEEREKLM FYER SG+RMHA+YFRPGGV QDI +V+DI + F L++
Sbjct: 133 TPFLWSFEEREKLMEFYERVSGARMHASYFRPGGVSQDISLGIVDDIYTFAGQFGQRLDE 192
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ ++LT NRI+++R V+IG V ++A WGFSGVM+RGSG WDLRK++PYE YSEL+F
Sbjct: 193 MEEMLTDNRIWQERLVDIGVVTAQEAVNWGFSGVMLRGSGVRWDLRKNEPYEVYSELNFR 252
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+GK GDCYDRYL R+ EMR+S+ II QC+N + G V D KI PP R+++K+
Sbjct: 253 GVVGKTGDCYDRYLARVEEMRQSLSIIHQCLNNM----PKGSVKIDDAKISPPSRSEVKQ 308
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+MESLIHHFKLYTEG VP GE Y A EAPKGEFGVYL+SDG N+PYRCKI+APG++HLQ
Sbjct: 309 NMESLIHHFKLYTEGVSVPSGETYTATEAPKGEFGVYLVSDGSNRPYRCKIKAPGFSHLQ 368
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ F+ K H LADV I+G+ DIVFGEVDR
Sbjct: 369 GLNFMAKSHMLADVVTIIGTQDIVFGEVDR 398
>gi|222053573|ref|YP_002535935.1| NADH dehydrogenase I, D subunit [Geobacter sp. FRC-32]
gi|221562862|gb|ACM18834.1| NADH dehydrogenase I, D subunit [Geobacter sp. FRC-32]
Length = 390
Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats.
Identities = 195/390 (50%), Positives = 275/390 (70%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
T+N GPQHP+ HGVL+L++ELDGEIVE+V PHIG LHRG EKL E +T+ Q +P D
Sbjct: 5 EIMTVNMGPQHPSTHGVLQLVIELDGEIVEKVTPHIGYLHRGVEKLSEHRTYHQTIPLTD 64
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDY+AP++ Y LAVEKLLGIE+P R Q IRV+ +E+ R+ SHL+ + T A+D+GA+
Sbjct: 65 RLDYLAPLSNNLGYVLAVEKLLGIEVPERAQTIRVILAELTRLKSHLVWIATHALDIGAM 124
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
T ++ F EREK+M YE+ SG+RM A+YFR GG+ +++ +D+ D+FP +
Sbjct: 125 TVFIYAFREREKVMDLYEKISGARMTASYFRVGGLSREVYEGFEKDVQEIVDTFPGHFDT 184
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
LLT N I+ QR V G + EDA +G +G +RGSG WDLR+ PY Y + F+
Sbjct: 185 YEGLLTKNTIWLQRTVGNGVISAEDAIDYGITGPALRGSGVDWDLRRDNPYSGYEKYKFE 244
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+P+G++ D +DRY VR++EMRE+VKI++Q ++ K GP+ A P++ P + D+
Sbjct: 245 VPVGQNCDTFDRYKVRLVEMREAVKIVKQALD----SLKPGPILADAPQVCYPPKEDVYN 300
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
++E LIHHFK+ +EG+ VP GEVY +VEAPKGE G Y++SDGG KPYR +IR P + +LQ
Sbjct: 301 TIEGLIHHFKIASEGFPVPEGEVYQSVEAPKGELGYYIVSDGGTKPYRMRIRPPSFVNLQ 360
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A+E + KG +AD+ A++G+LDIV GE+DR
Sbjct: 361 AIEKMAKGAMIADLVAVIGTLDIVLGEIDR 390
>gi|149235688|ref|XP_001523722.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Lodderomyces
elongisporus NRRL YB-4239]
gi|146452701|gb|EDK46957.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Lodderomyces
elongisporus NRRL YB-4239]
Length = 483
Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats.
Identities = 241/393 (61%), Positives = 299/393 (76%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K R FTINFGPQHPAAHGVLRLILEL GE + R DPH+GLLHRGTEKLIETKT++QA+P
Sbjct: 95 TKVRHFTINFGPQHPAAHGVLRLILELHGEEIIRSDPHVGLLHRGTEKLIETKTYMQALP 154
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M E +ALAVEKLL +EIP+R + IR L+ EI R+L+H ++V T MDV
Sbjct: 155 YFDRLDYVSMMTNEQVFALAVEKLLNVEIPLRAKYIRTLFGEITRVLNHCMSVLTHIMDV 214
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G LTP LWGFEEREKLM FYER SG+R+H+AY RPGGV QD+P L++DI W F
Sbjct: 215 GGLTPFLWGFEEREKLMEFYERVSGARLHSAYVRPGGVSQDLPAGLLDDIYMWATQFGDR 274
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++I +L T NRI+K+R +G V +DA + SGVM+RGSG +D+RKSQPY+ Y +
Sbjct: 275 IDEIEELCTDNRIWKERTEGVGVVTADDALNYSLSGVMLRGSGIPFDVRKSQPYDAYDLV 334
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DFDI +G +GDCYDRYL+RM E R+S++II QC+N + GPV D KI PP RA
Sbjct: 335 DFDIAVGLNGDCYDRYLIRMAEFRQSLRIIFQCINDM----PQGPVKVEDYKISPPSRAI 390
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK ME+LIHHF L+T+GY VP GE Y A+EAPKGE VY++SDG +PYRCKIRAPG+A
Sbjct: 391 MKEDMEALIHHFLLFTKGYAVPQGETYTAIEAPKGEMAVYVVSDGSERPYRCKIRAPGFA 450
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HL A + + +G LAD AI+G++D+VFGEVDR
Sbjct: 451 HLGAFDHIARGELLADAVAIIGTMDLVFGEVDR 483
>gi|84516739|ref|ZP_01004097.1| NADH dehydrogenase I, D subunit [Loktanella vestfoldensis SKA53]
gi|84509207|gb|EAQ05666.1| NADH dehydrogenase I, D subunit [Loktanella vestfoldensis SKA53]
Length = 412
Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats.
Identities = 280/394 (71%), Positives = 330/394 (83%), Gaps = 3/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++K R+F INFGPQHPAAHGVLRL+LELDGEIVER DPHIGLLHRGTEKL+E++T+LQ +
Sbjct: 22 EQKIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNL 81
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+PMNQEHA+ LA+EKL G +P R LIRVLYSEIGRIL+HL+NVTTQAMD
Sbjct: 82 PYFDRLDYVSPMNQEHAWCLAIEKLTGTVVPRRASLIRVLYSEIGRILNHLMNVTTQAMD 141
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTPPLWGFEEREKLMVFYERA G+R+HAAYFRPGGVHQD+P L+EDI W +FP
Sbjct: 142 VGALTPPLWGFEEREKLMVFYERACGARLHAAYFRPGGVHQDLPDALIEDIDAWAVTFPK 201
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+DI LLT NRIFKQRN +IG V +D WGFSGVM+RGSG AWDLR++QPYECY E
Sbjct: 202 VLDDIDSLLTENRIFKQRNCDIGVVTEQDIHDWGFSGVMVRGSGLAWDLRRAQPYECYDE 261
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+F +P+GK+GDCYDR+L RM EMR+S IIRQ +L + + K+ PP R
Sbjct: 262 FEFQVPVGKNGDCYDRFLCRMEEMRQSTHIIRQACAKLRVEKGDV---MARGKMTPPSRG 318
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SME+LIHHFKLYTEG+HVP GEVYAAVEAPKGEFGVYL++DG NKPYR K+RAPG+
Sbjct: 319 EMKTSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKGEFGVYLVADGTNKPYRAKLRAPGF 378
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQAM+ + GHQLADV+AI+G+LD+VFGE+DR
Sbjct: 379 LHLQAMDHIATGHQLADVAAIIGTLDVVFGEIDR 412
>gi|83746300|ref|ZP_00943353.1| Hypothetical Protein RRSL_03893 [Ralstonia solanacearum UW551]
gi|207723876|ref|YP_002254274.1| nadh dehydrogenaseI(chain d) protein [Ralstonia solanacearum MolK2]
gi|207742738|ref|YP_002259130.1| nadh dehydrogenaseI(chain d) protein [Ralstonia solanacearum
IPO1609]
gi|83727050|gb|EAP74175.1| Hypothetical Protein RRSL_03893 [Ralstonia solanacearum UW551]
gi|206589081|emb|CAQ36043.1| nadh dehydrogenaseI(chain d) protein [Ralstonia solanacearum MolK2]
gi|206594132|emb|CAQ61059.1| nadh dehydrogenaseI(chain d) protein [Ralstonia solanacearum
IPO1609]
Length = 417
Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats.
Identities = 232/418 (55%), Positives = 300/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E KT++Q+VP
Sbjct: 2 ADIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTWIQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY +A+E+L+G+E+P+R Q IRV++ EI RI++HL+ + A+DV
Sbjct: 62 YMDRLDYVSMMVNEHAYVMAIERLIGVEVPLRAQYIRVMFDEITRIMNHLMWIGAHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE L YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMAVFLYAFREREDLFDMYEAVSGARMHAAYYRPGGVYRDLPDTMPKFKASKVRNEKAL 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + D FP +++ LLT NRI+KQR V IG V E A G +
Sbjct: 182 AALNETRSGSLLDFIEAFTDRFPKYVDEYETLLTDNRIWKQRLVGIGVVTPERALQKGLT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG AWD+RK QPYE Y +DFDIP+G +GD YDRYLVR+ EMR+S +IIRQC++
Sbjct: 242 GPMLRGSGIAWDVRKKQPYEVYDRVDFDIPVGVNGDSYDRYLVRVEEMRQSNRIIRQCID 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ PP R DMK +ME LIHHFKL+TEG HVP GE YAAVE PKG
Sbjct: 302 WL--RKNQGPVITDNHKVAPPSRVDMKTNMEELIHHFKLFTEGMHVPEGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+Y+ISDG NKPYR KIRAPG+AHL A++ + +GH +AD I+G+ DIVFGE+DR
Sbjct: 360 EFGIYVISDGANKPYRLKIRAPGFAHLAALDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>gi|62896795|dbj|BAD96338.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) variant [Homo sapiens]
Length = 463
Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats.
Identities = 245/390 (62%), Positives = 310/390 (79%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
++ T+NFGPQHPAAHGVLRL++EL GE+V + DPHIGLLHRGTEKLIE KT+LQA+PYFD
Sbjct: 78 KNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFD 137
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYV+ M E AY+LAVEKLL I P R Q IRVL+ EI R+L+H++ VTT A+D+GA+
Sbjct: 138 RLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGAM 197
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP W FEEREK+ FYER SG+RMHAAY RPGGVHQD+P L++DI + +F L++
Sbjct: 198 TPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDE 257
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ +LLT NRI++ R ++IG V E+A +GFSGVM+RGSG WDLRK+QPY+ Y +++FD
Sbjct: 258 LEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFD 317
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+P+G GDCYDRYL R+ EMR+S++II QC+N++ G + D K+ PPKRA+MK
Sbjct: 318 VPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKM----PPGEIKVDDAKVSPPKRAEMKT 373
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
SMESLIHHFKLYTEGY VP G Y A+EAPKGEFGVYL+SDG ++PYRCKI+APG+AH
Sbjct: 374 SMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHQA 433
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 434 GLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
>gi|189426184|ref|YP_001953361.1| NADH dehydrogenase I, D subunit [Geobacter lovleyi SZ]
gi|218534408|sp|B3E9W6|NUOD_GEOLS RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|189422443|gb|ACD96841.1| NADH dehydrogenase I, D subunit [Geobacter lovleyi SZ]
Length = 390
Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats.
Identities = 193/390 (49%), Positives = 264/390 (67%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
TIN GPQHP+ HGVLR+++ELDGE + ++DP IG LHRG EKL E +T+ Q +P D
Sbjct: 5 EIMTINMGPQHPSTHGVLRMVIELDGETILKIDPDIGYLHRGVEKLSEHRTYHQTLPLTD 64
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDY+APM+ Y LAVEKLLGIE+P R Q IR++ +E+ R+ SHL+ + A+D+GA+
Sbjct: 65 RLDYLAPMSNNLGYMLAVEKLLGIEVPERAQTIRIIMTELTRLQSHLVWLACHALDIGAM 124
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
T ++ F ERE +M YE SG+RM + +FR GG+ QD+P E + + + P ++
Sbjct: 125 TVFIYAFREREVIMETYELISGARMTSNFFRAGGLSQDVPAEFEKKVRDFVAEMPGFIDT 184
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
LLTGN I+++R + G + EDA G +G +RGSG +DLR+ PY Y F
Sbjct: 185 YEGLLTGNPIWRKRTIGNGVISAEDATDIGITGPALRGSGVDFDLRRDIPYAGYENYQFK 244
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+P GK+ D +DRY VR++EMRES KI+ Q + RL K GPV A P++ P + +
Sbjct: 245 VPTGKNCDTFDRYQVRLIEMRESCKIVNQALERL----KPGPVLADAPQVCYPPKDSVYN 300
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
S+E LIHHFK+ +EGY VP GEVY VEAPKGE G YL+SDG +KPYR ++R P + +LQ
Sbjct: 301 SIEGLIHHFKIASEGYPVPEGEVYMGVEAPKGELGFYLVSDGSSKPYRMRVRPPSFVNLQ 360
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A+E + KG LAD+ AI+G+LDIV GE+DR
Sbjct: 361 AIEKMAKGAMLADLVAIIGTLDIVLGEIDR 390
>gi|260947394|ref|XP_002617994.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor [Clavispora lusitaniae ATCC 42720]
gi|238847866|gb|EEQ37330.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor [Clavispora lusitaniae ATCC 42720]
Length = 472
Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats.
Identities = 236/393 (60%), Positives = 300/393 (76%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K R FTINFGPQHPAAHGVLRLILEL GE + R DPH+GLLHRGTEKLIE+KT++QA+P
Sbjct: 84 TKIRHFTINFGPQHPAAHGVLRLILELHGEEIVRSDPHVGLLHRGTEKLIESKTYMQALP 143
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M E +ALAVEKLL +E+P+R + IR ++ EI RIL+H ++V + MDV
Sbjct: 144 YFDRLDYVSMMTNELVFALAVEKLLNVEVPLRAKYIRTMFGEITRILNHCMSVLSHIMDV 203
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G LTP LWGFEEREKLM FYER SG+R+H AY RPGGV QD+P L++DI W F
Sbjct: 204 GGLTPFLWGFEEREKLMEFYERVSGARLHTAYVRPGGVSQDLPAGLLDDIYMWATQFGDR 263
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ +L+T NRI+K R ++G V EDA + SGVM+RGSG +D+RK+QPY+ Y +
Sbjct: 264 IDETEELVTDNRIWKNRTQDVGVVTAEDALNYSMSGVMLRGSGVPYDIRKAQPYDAYELV 323
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DFD+ +G +GDCYDRYLVRM+E R+S++II QC+N + GPV D KI PP R+
Sbjct: 324 DFDVAVGLNGDCYDRYLVRMVEFRQSLRIIEQCINDM----PEGPVKVEDYKISPPPRSL 379
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK ME+LIHHF L+T+GY VP GE Y +EAPKGE GVY++SDG +PYRCKIRAPG+A
Sbjct: 380 MKEDMEALIHHFLLFTKGYAVPQGETYTVIEAPKGEMGVYVVSDGSERPYRCKIRAPGFA 439
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HL A + + +G+ LAD AI+G++D+VFGEVDR
Sbjct: 440 HLGAFDHVARGNLLADAVAIIGTMDLVFGEVDR 472
>gi|50424435|ref|XP_460805.1| DEHA2F10120p [Debaryomyces hansenii CBS767]
gi|49656474|emb|CAG89146.1| DEHA2F10120p [Debaryomyces hansenii]
Length = 482
Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats.
Identities = 233/393 (59%), Positives = 297/393 (75%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K R FTINFGPQHPAAHGVLRLILEL GE + R DPH+GLLHRGTEKLIE+KT++QA+P
Sbjct: 94 TKIRHFTINFGPQHPAAHGVLRLILELHGEEIVRADPHVGLLHRGTEKLIESKTYMQAIP 153
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M E +ALAVEKLL IE+P+R + IR L+ EI RIL+H ++V + MDV
Sbjct: 154 YFDRLDYVSMMTNELVFALAVEKLLNIEVPLRAKYIRTLFGEITRILNHCMSVLSHIMDV 213
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G LTP LWGFEEREKLM FYER SG+R+H+ Y RPGGV QD+P L++DI W F
Sbjct: 214 GGLTPFLWGFEEREKLMEFYERVSGARLHSNYVRPGGVSQDMPVGLLDDIYMWATQFGDR 273
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ +L+T NRI+ R ++G V EDA + SGVM+RGSG +D+RK+QPY+ Y +
Sbjct: 274 IDETEELITDNRIWAARTKDVGVVTAEDALNYSLSGVMLRGSGIPYDIRKAQPYDAYELV 333
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DFD+ +G +GDCYDRYL+RM E R+S++II QC+N + GP+ D K+ P R+
Sbjct: 334 DFDVAVGMNGDCYDRYLIRMAEFRQSLRIIYQCINDM----PNGPIKTEDFKVSAPPRSM 389
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK ME+LIHHF LYT+GY VP GE Y A+EAPKGE VY++SDG +PYRCKIRAPG+A
Sbjct: 390 MKEDMEALIHHFLLYTKGYAVPQGETYTAIEAPKGEMAVYVVSDGSERPYRCKIRAPGFA 449
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HL A + + +G+ LAD AI+G++D+VFGEVDR
Sbjct: 450 HLGAFDHISRGNLLADAVAIIGTMDLVFGEVDR 482
>gi|329914959|ref|ZP_08276195.1| NADH-ubiquinone oxidoreductase chain D [Oxalobacteraceae bacterium
IMCC9480]
gi|327545009|gb|EGF30334.1| NADH-ubiquinone oxidoreductase chain D [Oxalobacteraceae bacterium
IMCC9480]
Length = 417
Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats.
Identities = 240/418 (57%), Positives = 302/418 (72%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E KT+LQ+VP
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTYLQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EH Y +++EKLLG+E+P+R Q IRV++ EI R+L+HLL + A+DV
Sbjct: 62 YMDRLDYVSMMCNEHGYVMSIEKLLGLEVPLRAQYIRVMFDEITRLLNHLLWLGAHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP---------------- 167
GA+ L+ F ERE LM YE SG+R+HAAY+RPGGV++D+P
Sbjct: 122 GAMGVFLYAFREREDLMDCYEAVSGARLHAAYYRPGGVYRDLPEVMPKYSASILRNAKAI 181
Query: 168 ---------ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
L++ I + + FP +++ LLT NRI+KQR V +G V E A GF+
Sbjct: 182 GQLNENRQGSLLDFIEDFTNRFPRYVDEYETLLTDNRIWKQRLVGVGVVSPERALAMGFT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG WDLRK QPYE Y LDFDIP+G +GDCYDRYLVR+ EMR+S KII+QCV
Sbjct: 242 GPMLRGSGIEWDLRKKQPYEVYDLLDFDIPVGVNGDCYDRYLVRVEEMRQSNKIIKQCVE 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L +N GPV + K+ PP R +MK +ME LIHHFKL+TEG+HVP GE YAAVE PKG
Sbjct: 302 WL--RNNPGPVMTDNHKVAPPSRVNMKSNMEELIHHFKLFTEGFHVPPGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFGVYLISDG NKPYR KIRAPG+AHLQ + + KGH +AD I+G+ DIVFGE+DR
Sbjct: 360 EFGVYLISDGANKPYRLKIRAPGFAHLQGLNEMAKGHMIADAVTIIGTQDIVFGEIDR 417
>gi|186920135|ref|YP_001874789.1| NADH dehydrogenase subunit 7 [Hemiselmis andersenii]
gi|186461081|gb|ACC78243.1| NADH dehydrogenase subunit 7 [Hemiselmis andersenii]
Length = 399
Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats.
Identities = 256/395 (64%), Positives = 311/395 (78%), Gaps = 4/395 (1%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+KK + FTINFGPQHPAAHGVLRL+LEL+GE+VER DPHIGLLHRGTEKLIE KT+LQA
Sbjct: 9 NKKHLKHFTINFGPQHPAAHGVLRLVLELNGEVVERADPHIGLLHRGTEKLIEHKTYLQA 68
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+PYFDRLDYV+ M EHAY+L +EKLL E+P+R + IRVL+SEI RIL+HLL + AM
Sbjct: 69 LPYFDRLDYVSMMVNEHAYSLVIEKLLFCEVPLRAKYIRVLFSEITRILNHLLAICCHAM 128
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
DVGALTP LWGFEEREKLM FYER SG+RMHAAY RPGGV DIP L EDI + + F
Sbjct: 129 DVGALTPILWGFEEREKLMEFYERISGARMHAAYIRPGGVASDIPLGLCEDIFKFANQFS 188
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
S ++++ +LLT NRI+KQR V+IG + E A WG +G ++R +G WDLRK+QPY+ Y
Sbjct: 189 SRIDELEELLTENRIWKQRLVDIGVITFEQALDWGVTGPLLRSTGFFWDLRKTQPYDVYD 248
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
++ FD+PIGK GDCYDRY +R+ EMR+S++II QC+N++ N V D KI P R
Sbjct: 249 QVVFDVPIGKKGDCYDRYCIRIEEMRQSLRIILQCLNQMPETN----VKTDDRKIAAPLR 304
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
DMK SMESLIHHFKLYTEG+ +P E Y VE PKGEFGVYL++DG NK YRCKI APG
Sbjct: 305 VDMKSSMESLIHHFKLYTEGFSIPASEGYCGVEHPKGEFGVYLLADGTNKAYRCKINAPG 364
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ HLQA++F+ KGH LADV AI+G+LDIVFGE+DR
Sbjct: 365 FVHLQALDFMAKGHLLADVVAIIGTLDIVFGEIDR 399
>gi|256821518|ref|YP_003145481.1| NADH dehydrogenase subunit D [Kangiella koreensis DSM 16069]
gi|256795057|gb|ACV25713.1| NADH dehydrogenase I, D subunit [Kangiella koreensis DSM 16069]
Length = 417
Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats.
Identities = 244/418 (58%), Positives = 298/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ R++TINFGPQHPAAHGVLRLILE+DGE V R DPH+GLLHR TEKL E+K + Q++
Sbjct: 2 AEIRNYTINFGPQHPAAHGVLRLILEMDGETVVRADPHVGLLHRATEKLAESKPYNQSIG 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY L++EKL+GI+ P R Q IRVL+SEI RIL+HL+ + A+D+
Sbjct: 62 YMDRLDYVSMMCNEHAYVLSIEKLMGIKPPERAQYIRVLFSEITRILNHLMWIGAHALDI 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+T L+ F ERE LM YE SG+RMHA YFRPGGV++D+P E+
Sbjct: 122 GAMTVFLYAFREREILMDCYEAVSGARMHATYFRPGGVYRDLPDEMPQYKVSPFSNEKKV 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + ++FP +++ LLT NRI+KQR V IG V E A GFS
Sbjct: 182 DELNANRQGSLLDFIWDFTETFPDRVDEYEALLTENRIWKQRTVGIGVVTPERALQLGFS 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG AWDLRK QPYE Y ++ FDIPIGK GDCYDRYLVR+ EMR+S KIIRQCV
Sbjct: 242 GPMLRGSGIAWDLRKKQPYEVYDKMGFDIPIGKTGDCYDRYLVRVEEMRQSNKIIRQCVE 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ PP R MK ME+LIHHFKL+TEGY VP GE YAA+E PKG
Sbjct: 302 WL--RENPGPVMLENHKVTPPDRETMKDDMEALIHHFKLFTEGYCVPEGEAYAAIEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YL+SDG NKPYR KIRA G+AHL AM + GH LADV AI+G+ DIVFGE+DR
Sbjct: 360 EFGIYLVSDGANKPYRVKIRAAGFAHLSAMNEMAAGHMLADVVAIIGTQDIVFGEIDR 417
>gi|326316102|ref|YP_004233774.1| NADH dehydrogenase I subunit D [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323372938|gb|ADX45207.1| NADH dehydrogenase I, D subunit [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 417
Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats.
Identities = 232/418 (55%), Positives = 300/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++++NFGPQHPAAHGVLRL+LELDGE+V+R DPHIGLLHR TEKL E KTF+Q++P
Sbjct: 2 AEIKNYSLNFGPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRATEKLAEHKTFIQSLP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY LA+EKLLGI++P+R Q IRV++SEI R+L+HL+ + + D
Sbjct: 62 YMDRLDYVSMMCNEHAYCLAIEKLLGIDVPLRAQYIRVMFSEITRLLNHLMWLGSHGNDC 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
G+ T ++ F ERE L YE SG+RMHAAYFRPGGV++D+P +
Sbjct: 122 GSSTILIYTFREREDLFDMYEAVSGARMHAAYFRPGGVYRDLPDSMPQYQASKVRNAKAI 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP +++ LLT NRI+KQR V+IG V E A G +
Sbjct: 182 EVMNQNRRGSLLDFIDDFTQRFPKCVDEYETLLTDNRIWKQRTVDIGIVTPERALNLGMT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG AWDLRK QPY+ Y ++FDIP+GK GDCYDRYLVR+ EMR+S +II+QCV+
Sbjct: 242 GPMLRGSGIAWDLRKKQPYDAYDRVEFDIPVGKTGDCYDRYLVRVQEMRQSNRIIKQCVD 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L GPV + K+ PP R MK +ME LIHHFKL+TEG+ VP GE YAAVE PKG
Sbjct: 302 WLKA--NPGPVITDNHKVAPPSRESMKSNMEELIHHFKLFTEGFRVPEGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YL+SDG NKPYR KIRAPG+AHL ++ + +GH +AD AI+G++DIVFGE+DR
Sbjct: 360 EFGIYLVSDGANKPYRLKIRAPGFAHLATLDEMARGHMIADAVAIIGTMDIVFGEIDR 417
>gi|300703645|ref|YP_003745247.1| NADH-ubiquinone oxidoreductase subunit d [Ralstonia solanacearum
CFBP2957]
gi|299071308|emb|CBJ42626.1| NADH-ubiquinone oxidoreductase subunit D [Ralstonia solanacearum
CFBP2957]
Length = 417
Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats.
Identities = 233/418 (55%), Positives = 300/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E KT++Q+VP
Sbjct: 2 ADIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTWIQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY +A+E+LLG+E+P+R Q IRV++ EI RI++HL+ + A+DV
Sbjct: 62 YMDRLDYVSMMVNEHAYVMAIERLLGVEVPLRAQYIRVMFDEITRIMNHLMWIGAHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE L YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMAVFLYAFREREDLFDMYEAVSGARMHAAYYRPGGVYRDLPDTMPKFKASKVRNEKAL 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + D FP +++ LLT NRI+KQR V IG V E A G +
Sbjct: 182 AALNETRSGSLLDFIEAFTDRFPKYVDEYETLLTDNRIWKQRLVGIGVVTPERALQKGLT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG AWD+RK QPYE Y +DFDIP+G HGD YDRYLVR+ EMR+S +I+RQC++
Sbjct: 242 GPMLRGSGIAWDVRKKQPYEVYDRVDFDIPVGVHGDSYDRYLVRVEEMRQSNRIVRQCID 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ PP R DMK +ME LIHHFKL+TEG HVP GE YAAVE PKG
Sbjct: 302 WL--RKNPGPVITDNHKVAPPSRVDMKTNMEELIHHFKLFTEGMHVPEGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+Y+ISDG NKPYR KIRAPG+AHL A++ + +GH +AD I+G+ DIVFGE+DR
Sbjct: 360 EFGIYVISDGANKPYRLKIRAPGFAHLAALDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>gi|238028140|ref|YP_002912371.1| NADH dehydrogenase subunit D [Burkholderia glumae BGR1]
gi|237877334|gb|ACR29667.1| NADH dehydrogenase delta subunit [Burkholderia glumae BGR1]
Length = 417
Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats.
Identities = 238/418 (56%), Positives = 296/418 (70%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E KTF+Q+VP
Sbjct: 2 ADIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAENKTFIQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EH Y LA+EKLLGI++P R Q IRVL+ EI R+L+HL+ + + +DV
Sbjct: 62 YMDRLDYVSMMANEHGYVLAIEKLLGIDVPERAQYIRVLFDEITRVLNHLMWIGSHGLDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDVMPQYKASKIRNEKAL 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP +++ LLT NRI+KQR V IG V E A G +
Sbjct: 182 SKMNEARQGSVLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQLGLT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG WDLRK QPYE Y LDFDIP+G +GDCYDRYLVR+ EMR+S +I +QC+
Sbjct: 242 GAMLRGSGIEWDLRKKQPYEVYDRLDFDIPVGVNGDCYDRYLVRVEEMRQSCRIAKQCIE 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + KI PPKR DMK +ME LIHHFKL+TEG+HVP GE YAAVE PKG
Sbjct: 302 WL--RKNPGPVMTDNHKIAPPKRVDMKSNMEDLIHHFKLFTEGFHVPEGETYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YL+SDG NKPYR KIRAPGYAHL A+ + GH +AD I+G+ DIVFGE+DR
Sbjct: 360 EFGIYLVSDGANKPYRLKIRAPGYAHLSALNEMAHGHMIADAVTIIGTQDIVFGEIDR 417
>gi|296229450|ref|XP_002760241.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial-like [Callithrix jacchus]
Length = 463
Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats.
Identities = 245/390 (62%), Positives = 311/390 (79%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
++ +NFGPQHPAAHGVLRL++EL GE+V + DPHIGLLHRGTEKLIE KT+LQA+PYFD
Sbjct: 78 KNMKLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFD 137
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYV+ M E AY+LAVEKLL I P R Q IRVL+ EI R+++H++ VTT A+D+GA+
Sbjct: 138 RLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLMNHIMAVTTHALDIGAM 197
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP W FEEREK+ FYER SG+RMHAAY RPGGVHQD+P L++DI + +F L++
Sbjct: 198 TPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYEFSKNFSLRLDE 257
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ +LLT NRI++ R V+IG + E+A +GFSGVM+RGSG WDLRK+QPY+ Y +++FD
Sbjct: 258 LEELLTNNRIWRNRTVDIGVITAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFD 317
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+PIG HGDCYDRYL R+ EMR+S++II QC+N++ G + D K+ PPKRA+MK
Sbjct: 318 VPIGSHGDCYDRYLCRVEEMRQSLRIIVQCLNKM----PPGEIKVDDAKVSPPKRAEMKT 373
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
SMESLIHHFKLYTEGY VP G Y A+EAPKGEFGVYL+SDG ++PYRCKI+APG+AHL
Sbjct: 374 SMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLA 433
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ + KGH LADV AI+G+ DIVFGE+DR
Sbjct: 434 GLDRMSKGHMLADVVAIIGTQDIVFGEIDR 463
>gi|56478179|ref|YP_159768.1| NADH dehydrogenase subunit D [Aromatoleum aromaticum EbN1]
gi|81356984|sp|Q5P1E7|NUOD_AZOSE RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|56314222|emb|CAI08867.1| NADH dehydrogenase I, chain D [Aromatoleum aromaticum EbN1]
Length = 417
Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats.
Identities = 244/418 (58%), Positives = 309/418 (73%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ R++TINFGPQHP+AHGVLRL+LELDGE+V R DPHIGLLHRGTEKL ET+T++Q+VP
Sbjct: 2 AEIRNYTINFGPQHPSAHGVLRLVLELDGEVVVRADPHIGLLHRGTEKLAETRTWVQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY LA+E+LLG+E+PIR Q IRV++ EI RIL+HLL + T A+D+
Sbjct: 62 YMDRLDYVSMMCNEHAYCLAIERLLGLEVPIRAQYIRVMFDEITRILNHLLGIGTHALDI 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+T L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMTMVLYTFREREDLMDAYEAVSGARMHAAYYRPGGVYRDLPDRMPQYVVNKFKNANTV 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ + + + F +D LLT NRI+KQR V IG V E A WGF+
Sbjct: 182 RELNENRQGSLLDFLEDFTERFNGYCDDYETLLTDNRIWKQRTVGIGVVTPEQAKAWGFT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG AWDLRK QPYE Y +DFDIP+GK+GDCYDRYL RM EMR+S +I++QC++
Sbjct: 242 GPMLRGSGVAWDLRKKQPYEVYDRMDFDIPVGKNGDCYDRYLCRMEEMRQSNRIVKQCID 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV A + K+ PP R MK +ME LIHHFKL+TEG HVP GEVYAA+E PKG
Sbjct: 302 WL--RKNPGPVIADNYKVAPPPRERMKGNMEELIHHFKLFTEGMHVPSGEVYAAIEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFGVY +SDG NKPYR K+RAPG+AHL AM+ + +GH +ADV AI+G++D+VFGE+DR
Sbjct: 360 EFGVYAVSDGANKPYRLKLRAPGFAHLAAMDEIARGHMIADVVAIIGTMDVVFGEIDR 417
>gi|134118060|ref|XP_772411.1| hypothetical protein CNBL2770 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255024|gb|EAL17764.1| hypothetical protein CNBL2770 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 452
Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats.
Identities = 244/394 (61%), Positives = 307/394 (77%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ + R FT+NFGPQHPAAHGVLRLILEL+GE + R DPHIGLLHRGTEKLIE K + QA+
Sbjct: 63 EAEMRHFTVNFGPQHPAAHGVLRLILELNGEEILRADPHIGLLHRGTEKLIEYKNYTQAL 122
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E +Y++AVE+LL IE+P R + IR L+ EI R+L+HL+ V T AMD
Sbjct: 123 PYFDRLDYVSMMTNELSYSIAVERLLNIEVPERAKWIRTLFGEITRVLNHLMAVLTHAMD 182
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTP LWGFEEREKLM FYER SG+RMHAAY RPGGV D+P L++DI W F S
Sbjct: 183 VGALTPFLWGFEEREKLMEFYERVSGARMHAAYVRPGGVAFDLPHGLLDDIFKWATQFSS 242
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++++ +++TGNRI+KQR + IG V + A + FSGVM+RGSG WD+RK PY+ Y +
Sbjct: 243 RVDEVEEVVTGNRIWKQRTIGIGPVTAQQALDYSFSGVMLRGSGIPWDIRKVAPYDAYDK 302
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++FD+P+GK+GDCYDRYL R+ E RES++II QC+N++ G D KIVPP RA
Sbjct: 303 VEFDVPVGKNGDCYDRYLCRVQEFRESLRIIGQCLNKIPD----GAYKVDDHKIVPPPRA 358
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
MK SMESLIHHFK+++EGY VP GE YAA+EAPKGE GVYL+SDG N+PY+CKIRAPG+
Sbjct: 359 SMKESMESLIHHFKIFSEGYSVPPGETYAAIEAPKGEMGVYLVSDGTNRPYKCKIRAPGF 418
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL +F+ + H L D AI+G++D+VFGEVDR
Sbjct: 419 AHLAGADFMMRHHFLPDAVAIIGTMDLVFGEVDR 452
>gi|167836052|ref|ZP_02462935.1| NADH dehydrogenase subunit D [Burkholderia thailandensis MSMB43]
Length = 417
Score = 441 bits (1134), Expect = e-122, Method: Composition-based stats.
Identities = 238/418 (56%), Positives = 298/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E KTF+Q+VP
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAENKTFIQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EH Y LA+EKLLGI++P R Q IRVL+ EI R+L+HL+ + A+DV
Sbjct: 62 YMDRLDYVSMMVNEHGYVLAIEKLLGIDVPERAQYIRVLFDEITRVLNHLMWIGAHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPEAMPQYKASKIRNERAL 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP +++ LLT NRI+KQR V IG V E A G +
Sbjct: 182 AKMNEARSGSVLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQLGLT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G MIRGSG AWDLRK QPYE Y LDFDIP+G +GDCYDRYLVR+ EMR+S +I +QC+
Sbjct: 242 GPMIRGSGIAWDLRKKQPYEVYDRLDFDIPVGVNGDCYDRYLVRVEEMRQSTRIAKQCIE 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ PP R MK +ME LIHHFKL+TEG+HVP GE YAAVE PKG
Sbjct: 302 WL--RKNPGPVITDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGETYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YL+SDG NKPYR KIRAPGYAHL A++ + +GH +AD I+G+ DIVFGE+DR
Sbjct: 360 EFGIYLVSDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>gi|329889335|ref|ZP_08267678.1| NADH-quinone oxidoreductase chain 4 [Brevundimonas diminuta ATCC
11568]
gi|328844636|gb|EGF94200.1| NADH-quinone oxidoreductase chain 4 [Brevundimonas diminuta ATCC
11568]
Length = 392
Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats.
Identities = 283/392 (72%), Positives = 338/392 (86%), Gaps = 1/392 (0%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
R FTINFGPQHPAAHGVLRL+LELDGE+V RVDPHIGLLHRGTEKL+E +T+LQ +PY
Sbjct: 2 DDRKFTINFGPQHPAAHGVLRLVLELDGELVTRVDPHIGLLHRGTEKLMEARTYLQNIPY 61
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDYV+PMNQEHA+ LA+E+LLG+++P RGQLIRVLYSE+GRIL+HLLN T QAMDVG
Sbjct: 62 LDRLDYVSPMNQEHAFCLAIERLLGLDVPYRGQLIRVLYSEMGRILNHLLNATMQAMDVG 121
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
ALTPPLWG EEREKLMVFYERA G+R+HA YFRPGGVHQD+ PEL++DIG WC FP+ L
Sbjct: 122 ALTPPLWGHEEREKLMVFYERACGARLHANYFRPGGVHQDLTPELIDDIGRWCAEFPAKL 181
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
DI L+T NRIFKQRNV+IG V E+A WGFSGVM+RGS AWDLRK+QPY+CY++++
Sbjct: 182 ADIESLVTENRIFKQRNVDIGVVSKENALAWGFSGVMLRGSDIAWDLRKAQPYDCYADME 241
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDI +GK+GDC+DRYLVR+ EMR+SV+I+ QC+++L PV + D K+ PP+R +M
Sbjct: 242 FDIAVGKNGDCWDRYLVRVEEMRQSVRIMEQCIHKLRNCPGE-PVLSEDHKVTPPRRGEM 300
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
KRSME+LIHHFKLYTEG+ P GEVYAAVEAPKGEFGVYL+SDG NKPYR K+ APG+ H
Sbjct: 301 KRSMEALIHHFKLYTEGFKTPEGEVYAAVEAPKGEFGVYLVSDGTNKPYRVKLSAPGFRH 360
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
LQAM+++ +GH LADVSAILGSLD+VFGEVDR
Sbjct: 361 LQAMDWMNRGHMLADVSAILGSLDMVFGEVDR 392
>gi|269469171|gb|EEZ80713.1| NADH dehydrogenase I chain D [uncultured SUP05 cluster bacterium]
Length = 417
Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats.
Identities = 237/418 (56%), Positives = 301/418 (72%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ R++T+NFGPQHPAAHGVLRLILE+DGE++ER DPHIGLLHRGTEKL E+K + Q++
Sbjct: 2 AEIRNYTLNFGPQHPAAHGVLRLILEIDGEVIERADPHIGLLHRGTEKLAESKPYNQSIG 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY +A+E +L +E+P R + IRV++ EI RIL+HL+ + T +DV
Sbjct: 62 YMDRLDYVSMMCNEHAYVMAIETMLELEVPERAKYIRVMFDEITRILNHLMWLGTHGLDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA++ L+ F EREKL+ YE SGSRMHA Y+RPGGV++D+P ++
Sbjct: 122 GAMSIFLYAFREREKLIDCYEAVSGSRMHATYYRPGGVYRDLPDKMPQYLESDFRTEKEL 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP ++ DLLT NRI+KQR VNIG V A GF+
Sbjct: 182 KVMNANRQGSLLDFIADFVKEFPKSIKQYDDLLTDNRIWKQRLVNIGIVSANRAKQLGFT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG AWDLRK+QPY Y +++FDIP+G GD YDRYLVRM EMR+S II QCV
Sbjct: 242 GPMLRGSGVAWDLRKNQPYAVYDKMEFDIPVGVTGDSYDRYLVRMEEMRQSNHIIDQCVE 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L +N GPV + D K+ PP R +MK MESLIHHFKL+TEGY +P GEVY+A+E PKG
Sbjct: 302 WL--QNNPGPVMSDDHKVAPPNRVEMKDDMESLIHHFKLFTEGYCLPEGEVYSAIEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFGVYLISDG NKPYR KIRAPG+AHL AM+ + +GH L+DV I+G+ DIVFGE+DR
Sbjct: 360 EFGVYLISDGANKPYRVKIRAPGFAHLAAMDEMARGHMLSDVVTIIGTQDIVFGEIDR 417
>gi|126740379|ref|ZP_01756067.1| NADH dehydrogenase subunit D [Roseobacter sp. SK209-2-6]
gi|126718515|gb|EBA15229.1| NADH dehydrogenase subunit D [Roseobacter sp. SK209-2-6]
Length = 404
Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats.
Identities = 285/394 (72%), Positives = 335/394 (85%), Gaps = 3/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++K R+F INFGPQHPAAHGVLRL+LELDGEIVER DPHIGLLHRGTEKL+E++T+LQ +
Sbjct: 14 EQKIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNL 73
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYVAPMNQEHA+ LA+EKL G+E+P RGQLIRVLYSEIGR+L+HLLNVTTQAMD
Sbjct: 74 PYFDRLDYVAPMNQEHAWCLAIEKLTGVEVPRRGQLIRVLYSEIGRVLNHLLNVTTQAMD 133
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTPPLWGFEEREKLM+FYERA G+R+H+ YFRPGGVHQD+P +L++DI W FP
Sbjct: 134 VGALTPPLWGFEEREKLMIFYERACGARLHSNYFRPGGVHQDLPDDLLDDIDLWALEFPK 193
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+DI LLT NRIFKQRN +IG V E+ +GFSGVM+RGSG AWDLR++QPYECY E
Sbjct: 194 VLDDIDGLLTENRIFKQRNCDIGVVTEEEILEYGFSGVMVRGSGLAWDLRRAQPYECYDE 253
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF +P+GK+GDCYDRYL RM EMR+S IIRQ + +L + K+ PPKR
Sbjct: 254 FDFQVPVGKNGDCYDRYLCRMEEMRQSTSIIRQAIAKLREATGDV---LARGKLTPPKRG 310
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SMESLIHHFKLYTEG+HVP GEVYAAVEAPKGEFGVYL++DG NKPYR KIRAPGY
Sbjct: 311 EMKTSMESLIHHFKLYTEGFHVPAGEVYAAVEAPKGEFGVYLVADGSNKPYRSKIRAPGY 370
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQAM+ + KGHQLADV+AI+G++D+VFGE+DR
Sbjct: 371 LHLQAMDHVAKGHQLADVAAIIGTMDVVFGEIDR 404
>gi|226348818|gb|ACO50722.1| NADH dehydrogenase subunit 7 [Micromonas pusilla CCMP1545]
Length = 398
Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats.
Identities = 259/393 (65%), Positives = 313/393 (79%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
KK ++FT+NFGPQHPAAHGVLRL+LE++GE+VER DPHIGLLHRGTEKL+E K ++QA+P
Sbjct: 10 KKVKNFTLNFGPQHPAAHGVLRLVLEMNGEVVERADPHIGLLHRGTEKLVEYKNYMQALP 69
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M QEH Y+LAVEKLL IP+R Q IRVL+ EI R+L+HLL ++ AMDV
Sbjct: 70 YFDRLDYVSMMAQEHGYSLAVEKLLQCPIPLRAQYIRVLFCEITRVLNHLLALSCHAMDV 129
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP LW FEEREKLM FYER SG+RMHAAY RPGGV QD+P L +DI +C F S
Sbjct: 130 GALTPFLWAFEEREKLMEFYERVSGARMHAAYIRPGGVAQDLPLGLCDDIHTFCVHFASR 189
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
++++ ++LT NRI+KQR VNIGTV EDA WGFSGVM+RGSG AWDLRK+QP + Y +
Sbjct: 190 IDEMEEMLTNNRIWKQRLVNIGTVSAEDALAWGFSGVMLRGSGVAWDLRKTQPTDAYDRV 249
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
FD+P+G +GDCYDRY++R+ EMR+S++II CVN + G + D KI PP R
Sbjct: 250 SFDVPVGSNGDCYDRYVIRIEEMRQSLRIILACVNAM----PEGSIKVDDRKITPPSRTH 305
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK SMESLIHHFK YTEG VP GEVY VEAPKGEFGVYL+S+G +KPYRCKIRAPG+
Sbjct: 306 MKASMESLIHHFKHYTEGVVVPAGEVYVGVEAPKGEFGVYLVSNGTHKPYRCKIRAPGFV 365
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQA++F+ K H LADV I+G+ DIVFGEVDR
Sbjct: 366 HLQALDFMAKHHMLADVVTIIGTQDIVFGEVDR 398
>gi|225024122|ref|ZP_03713314.1| hypothetical protein EIKCOROL_00990 [Eikenella corrodens ATCC
23834]
gi|224943147|gb|EEG24356.1| hypothetical protein EIKCOROL_00990 [Eikenella corrodens ATCC
23834]
Length = 418
Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats.
Identities = 246/418 (58%), Positives = 308/418 (73%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K R++TINFGPQHPAAHGVLR+ILEL+GE + R DPHIGLLHRGTEKL ET+T+LQA+P
Sbjct: 3 TKLRNYTINFGPQHPAAHGVLRMILELEGETIVRADPHIGLLHRGTEKLAETRTYLQALP 62
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M E AY LA+EKLLGI+IPIR + IR +++E+ RIL+HL+ + + A+D+
Sbjct: 63 YMDRLDYVSMMVNEQAYCLAIEKLLGIDIPIRAKYIRTMFAEVTRILNHLMGIGSHALDI 122
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP---------------- 167
GA+T L+ F +RE+LM YE SG+RMHAAY+RPGGV++D+P
Sbjct: 123 GAMTAILYAFRDREELMDLYEAVSGARMHAAYYRPGGVYRDLPDFMPKYEASKFRNAKVL 182
Query: 168 ---------ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
+++ I +C FP ++ + LLT NRI+KQR V IG V E A GF+
Sbjct: 183 KELNEAREGTMLDFIEAFCKRFPGRIDTLETLLTDNRIWKQRTVGIGVVSPERALQKGFT 242
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
GVM+RGSG WD+RK +PYE Y ++DFDIP+G +GDCYDRYL R+ EMR+SV+II+QCV+
Sbjct: 243 GVMLRGSGIEWDVRKKEPYEVYDKMDFDIPVGVNGDCYDRYLCRINEMRQSVRIIQQCVD 302
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV D K+ PPKR +MK ME LIHHFKL+TEG HVP GE Y AVE PKG
Sbjct: 303 WL--RVNPGPVIVDDHKVAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKG 360
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFGVY+ISDG NKPYR KIRAPG+AHLQ M+ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 361 EFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|268553423|ref|XP_002634697.1| C. briggsae CBR-TAG-99 protein [Caenorhabditis briggsae]
gi|187023994|emb|CAP36887.1| CBR-NDUF-2.2 protein [Caenorhabditis briggsae AF16]
Length = 474
Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats.
Identities = 231/394 (58%), Positives = 301/394 (76%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+K + +NFGPQHPAAHGVLRL+L+L+GE++ + PHIGLLHR TEKLIE KT+ QA+
Sbjct: 85 EKNLENMILNFGPQHPAAHGVLRLVLKLEGEVIIKAIPHIGLLHRATEKLIEHKTYTQAL 144
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E A+ALA+EKLLGI+IP R + IR L+ E+ RI +H++ +TT A+D
Sbjct: 145 PYFDRLDYVSMMCNEQAFALAIEKLLGIDIPPRAKYIRTLFGELTRIQNHIMGITTHALD 204
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA+TP W FEEREKL F ER SG+RMHA Y RPGGV D+P L++DI W FP+
Sbjct: 205 IGAMTPFFWMFEEREKLFEFSERVSGARMHANYVRPGGVAWDLPIGLMDDIYDWATKFPA 264
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++++ D+LT NRI+K R V+IG V DA WGFSGVM+RGSG D+RK+QPY+ Y++
Sbjct: 265 RIDELEDMLTENRIWKARTVDIGLVSAADALNWGFSGVMVRGSGIKQDVRKTQPYDAYAD 324
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++FD+PIG GDCYDRYL R+ EMR+S+ II QC+N++ G + D K+VPPKRA
Sbjct: 325 MEFDVPIGTKGDCYDRYLCRVEEMRQSLNIIIQCLNKM----PTGEIKVDDHKVVPPKRA 380
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK +MESLIHHFK +TEG+ VP G Y +EAPKGEFGVYL++DG KPYRC IRAPG+
Sbjct: 381 EMKENMESLIHHFKFFTEGFQVPPGATYVPIEAPKGEFGVYLVADGTGKPYRCFIRAPGF 440
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL A+ +C +AD+ A++G++DIVFGEVDR
Sbjct: 441 AHLAAIHDVCYMSLIADIVAVIGTMDIVFGEVDR 474
>gi|83721170|ref|YP_441617.1| NADH dehydrogenase subunit D [Burkholderia thailandensis E264]
gi|167580425|ref|ZP_02373299.1| NADH dehydrogenase subunit D [Burkholderia thailandensis TXDOH]
gi|167618534|ref|ZP_02387165.1| NADH dehydrogenase subunit D [Burkholderia thailandensis Bt4]
gi|257139687|ref|ZP_05587949.1| NADH dehydrogenase subunit D [Burkholderia thailandensis E264]
gi|123537636|sp|Q2SZN2|NUOD_BURTA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|83654995|gb|ABC39058.1| NADH dehydrogenase I, D subunit [Burkholderia thailandensis E264]
Length = 417
Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats.
Identities = 238/418 (56%), Positives = 299/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E+KTF+Q+VP
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESKTFIQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EH Y LA+EKLLGIE+P R Q IRVL+ EI R+L+HL+ + A+DV
Sbjct: 62 YMDRLDYVSMMVNEHGYVLAIEKLLGIEVPERAQYIRVLFDEITRVLNHLMWIGAHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPEAMPQYKASKIRNERAL 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP +++ LLT NRI+KQR V IG V E A G +
Sbjct: 182 AKMNEARSGSVLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQLGLT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G MIRGSG AWDLRK QPYE Y +DFDIP+G +GDCYDRYLVR+ EMR+S +I +QC+
Sbjct: 242 GPMIRGSGIAWDLRKKQPYEVYDRIDFDIPVGVNGDCYDRYLVRVEEMRQSTRIAKQCIE 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ PP R MK +ME LIHHFKL+TEG+HVP GE YAAVE PKG
Sbjct: 302 WL--RENPGPVITDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YL+SDG NKPYR KIRAPGYAHL A++ + +GH +AD I+G+ DIVFGE+DR
Sbjct: 360 EFGIYLVSDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>gi|124266599|ref|YP_001020603.1| NADH dehydrogenase subunit D [Methylibium petroleiphilum PM1]
gi|218534417|sp|A2SFM9|NUOD_METPP RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|124259374|gb|ABM94368.1| NADH dehydrogenase [Methylibium petroleiphilum PM1]
Length = 417
Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats.
Identities = 236/418 (56%), Positives = 303/418 (72%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRLILELDGE+++R DPHIGLLHR TEKL E+KT++Q++P
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLILELDGEVIQRADPHIGLLHRATEKLAESKTYIQSLP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY LA+EKLLG+++P+R Q IRV++SEI RIL+HLL + +D
Sbjct: 62 YMDRLDYVSMMCNEHAYCLAIEKLLGVDVPVRAQYIRVMFSEITRILNHLLWIGAHGLDC 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ ++ F ERE L YE SG+RMHAAYFRPGGV++D+P +
Sbjct: 122 GAMNILIYAFREREDLFDMYEAVSGARMHAAYFRPGGVYRDLPDTMPQYRVSKIRNAKAL 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I +C FP ++D LLT NRI+KQR V IG V E A GF+
Sbjct: 182 AKMNENRQGSLLDFIEDFCRRFPKNVDDYETLLTDNRIWKQRTVGIGVVTPERALNLGFT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG AWDLRK+QPY+ Y +DFDIP+G GDCYDRYLVR+ E+R+S +II+QC
Sbjct: 242 GPMLRGSGIAWDLRKTQPYDVYDRVDFDIPVGAGGDCYDRYLVRVEELRQSNRIIQQCAA 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ P R DMK +ME LIHHFKL+TEG+HVP GE YAAVE PKG
Sbjct: 302 WL--RANPGPVITDNHKVAAPGRVDMKSNMEELIHHFKLFTEGFHVPEGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YL+SDG NKPYR KIRAPG+AHL AM+ + +GH +AD A++G++DIVFGE+DR
Sbjct: 360 EFGIYLVSDGANKPYRLKIRAPGFAHLAAMDEMSRGHMIADAVAVIGTMDIVFGEIDR 417
>gi|110816059|ref|YP_684391.1| NADH dehydrogenase subunit 7 [Oltmannsiellopsis viridis]
gi|86450270|gb|ABC96349.1| NADH dehydrogenase subunit 7 [Oltmannsiellopsis viridis]
Length = 398
Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats.
Identities = 249/396 (62%), Positives = 316/396 (79%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ K+ ++FT+N GPQHP+AHGVLRL+LEL+GE++ER DPHIGLLHRG EKLIE KTF+Q
Sbjct: 7 IKPKQVKNFTLNLGPQHPSAHGVLRLVLELNGEVIERADPHIGLLHRGCEKLIEYKTFVQ 66
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+ M QEH+Y LA+EKL+ E+P+R Q IRVL+SEI RIL+HLL ++ A
Sbjct: 67 ALPYFDRLDYVSMMAQEHSYCLAIEKLVDCELPLRAQYIRVLFSEITRILNHLLALSCHA 126
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+DVGALTP LW FEEREKL+ FYERASG+RMHAAYFRPGGV QD+P L +DI + F
Sbjct: 127 LDVGALTPFLWAFEEREKLLEFYERASGARMHAAYFRPGGVAQDLPAGLCDDIHQFAKQF 186
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
S L++I ++LT NRI+KQR V+IGTV ++A WGFSGV++RGSG WDLR +QPYE Y
Sbjct: 187 ASRLDEIEEMLTNNRIWKQRLVDIGTVTAKEALDWGFSGVLVRGSGIPWDLRTAQPYEVY 246
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+ F +P+G GDCYDRYL+R+ EMR+S++II Q +N++ G V D K+ PP
Sbjct: 247 DRMKFSVPVGIRGDCYDRYLIRVEEMRQSLQIIMQALNQM----PNGCVKVDDKKLTPPS 302
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R+ +K+SMESLIHHFKLYTEG++VP E YAAVEAPKGEFGV+L+S+G NKPYRCKIRAP
Sbjct: 303 RSQLKQSMESLIHHFKLYTEGFNVPASETYAAVEAPKGEFGVFLVSNGTNKPYRCKIRAP 362
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Y LQ ++F+ + H LADV I+G+LD+VFG +DR
Sbjct: 363 DYNSLQGLDFMARKHLLADVVTIIGTLDVVFGSIDR 398
>gi|328862441|gb|EGG11542.1| hypothetical protein MELLADRAFT_33293 [Melampsora larici-populina
98AG31]
Length = 469
Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats.
Identities = 239/388 (61%), Positives = 305/388 (78%), Gaps = 4/388 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
R FT+NFGPQHPAAHGVLRLILE++GE + R DPH+GLLHRGTEKLIE K + QA+PYFD
Sbjct: 78 RHFTVNFGPQHPAAHGVLRLILEMNGEEILRADPHVGLLHRGTEKLIEYKNYTQALPYFD 137
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYV+ M E Y+ AVEKLL IE+P R + IR L+ EI R+L+HL+ V T AMDVGAL
Sbjct: 138 RLDYVSMMTNELCYSRAVEKLLNIEVPDRAKWIRTLFGEITRVLNHLMAVLTHAMDVGAL 197
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP LWGFEEREKLM FYER SG+R+HAAY RPGGV D+P L++DI W +F +++
Sbjct: 198 TPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVAFDLPHGLLDDIFTWATAFSHRIDE 257
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
++LT NRI+KQR + IG V + DA +GFSGVM+RGSG WD+RKS+PY+ Y +++FD
Sbjct: 258 FEEVLTENRIWKQRTIGIGKVTVADALNYGFSGVMLRGSGVPWDIRKSEPYDAYDQVEFD 317
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
IP+GK+GDCYDRYL R+ E R+S++II QC+N++ G + D K+ PP RA MK
Sbjct: 318 IPVGKNGDCYDRYLCRIEEFRQSLRIIHQCLNKMPA----GQIKVDDYKLTPPPRASMKE 373
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
SME+LIHHFKL++EGY+VP GE Y+A+EAPKGE GVYL+SDG N+PYRC+IRAPG+AHL
Sbjct: 374 SMEALIHHFKLFSEGYNVPPGETYSAIEAPKGEMGVYLVSDGSNRPYRCRIRAPGFAHLA 433
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEV 394
+F+ + H L D+ AI+G++D+VFGEV
Sbjct: 434 GADFMSRHHFLPDMVAIIGTMDLVFGEV 461
>gi|296446751|ref|ZP_06888690.1| NADH dehydrogenase I, D subunit [Methylosinus trichosporium OB3b]
gi|296255754|gb|EFH02842.1| NADH dehydrogenase I, D subunit [Methylosinus trichosporium OB3b]
Length = 396
Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats.
Identities = 283/396 (71%), Positives = 325/396 (82%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + +RSFT+NFGP HPAAHGVLRL+LELDGEIV DPH+G LHRGTEKL+E KT+LQ
Sbjct: 1 MSLQPARSFTLNFGPVHPAAHGVLRLVLELDGEIVRHADPHVGFLHRGTEKLLEDKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PYFDRLDYVAPMNQEH + LA E+LL +EIP R QLIRVLY EIGR+LSHLLN+TT A
Sbjct: 61 GLPYFDRLDYVAPMNQEHGFCLAAERLLELEIPRRAQLIRVLYLEIGRLLSHLLNITTWA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D GALTP LWGFEEREKLM FYERASG+RMHA YFR GGVHQD+P L++DI +CD F
Sbjct: 121 SDCGALTPNLWGFEEREKLMGFYERASGARMHANYFRVGGVHQDLPEALIDDIDDFCDRF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P L+DI LLT NRIFK RNV+IG V LE+AWG GFSGV +R GAAWDLRK+QPYECY
Sbjct: 181 PHVLDDIEALLTDNRIFKARNVDIGAVTLEEAWGLGFSGVFLRACGAAWDLRKAQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E+DFDIP+G+HGDCYDRY VR+ E+R+S +I++Q V +L + GPV+A PKI PP
Sbjct: 241 EEMDFDIPVGRHGDCYDRYCVRVEELRQSTRIMKQSVTKLRAGDGKGPVAAQHPKITPPP 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R MKRSME+ I HFKLYTEG HVP GEVY AVEAPKGEFGVYL+S GG+KPYRCKIR P
Sbjct: 301 REVMKRSMEATIEHFKLYTEGVHVPAGEVYVAVEAPKGEFGVYLVSRGGDKPYRCKIRPP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YAHL A E L +GH LADV+AI+GSLDIVFGE+DR
Sbjct: 361 SYAHLAATELLSRGHMLADVAAIIGSLDIVFGEIDR 396
>gi|58270580|ref|XP_572446.1| NADH-ubiquinone oxidoreductase [Cryptococcus neoformans var.
neoformans JEC21]
gi|57228704|gb|AAW45139.1| NADH-ubiquinone oxidoreductase, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 452
Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats.
Identities = 244/394 (61%), Positives = 307/394 (77%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ + R FT+NFGPQHPAAHGVLRLILEL+GE + R DPHIGLLHRGTEKLIE K + QA+
Sbjct: 63 EAEMRHFTVNFGPQHPAAHGVLRLILELNGEEILRADPHIGLLHRGTEKLIEYKNYTQAL 122
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E +Y++AVE+LL IE+P R + IR L+ EI R+L+HL+ V T AMD
Sbjct: 123 PYFDRLDYVSMMTNELSYSIAVERLLNIEVPERAKWIRTLFGEITRVLNHLMAVLTHAMD 182
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTP LWGFEEREKLM FYER SG+RMHAAY RPGGV D+P L++DI W F S
Sbjct: 183 VGALTPFLWGFEEREKLMEFYERVSGARMHAAYVRPGGVAFDLPHGLLDDIFKWATQFSS 242
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++++ +++TGNRI+KQR + IG V + A + FSGVM+RGSG WD+RK PY+ Y +
Sbjct: 243 RVDEVEEVVTGNRIWKQRTIGIGPVTAQQALDYSFSGVMLRGSGIPWDIRKVAPYDAYDK 302
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++FD+P+GK+GDCYDRYL R+ E RES++II QC+N++ G D KIVPP RA
Sbjct: 303 VEFDVPVGKNGDCYDRYLCRVQEFRESLRIIGQCLNKIPD----GAYKVDDHKIVPPPRA 358
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
MK SMESLIHHFK+++EGY VP GE YAA+EAPKGE GVYL+SDG N+PY+CKIRAPG+
Sbjct: 359 SMKESMESLIHHFKIFSEGYSVPPGETYAAIEAPKGEMGVYLVSDGTNRPYKCKIRAPGF 418
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL +F+ + H L D AI+G++D+VFGEVDR
Sbjct: 419 AHLAGADFMMRHHFLPDAVAIIGTMDLVFGEVDR 452
>gi|158289654|ref|XP_311336.3| AGAP000794-PA [Anopheles gambiae str. PEST]
gi|157018621|gb|EAA06952.3| AGAP000794-PA [Anopheles gambiae str. PEST]
Length = 468
Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats.
Identities = 245/393 (62%), Positives = 309/393 (78%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+K+ ++NFGPQHPAAHGVLRL+LELDGE V R DPHIGLLHRGT KLIE KT+ QA+P
Sbjct: 81 EKTVRNSLNFGPQHPAAHGVLRLVLELDGETVMRADPHIGLLHRGT-KLIEYKTYTQALP 139
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M E Y+LAVEKLL I+IP+R + IRVL++EI RIL+H++ V T A+DV
Sbjct: 140 YFDRLDYVSMMCNEQCYSLAVEKLLNIDIPLRAKYIRVLFAEITRILNHIMAVGTHALDV 199
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP W FEEREK+M FYER SG+RMHAAY RPGGV QD+P L++DI + F
Sbjct: 200 GALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSQDLPLGLLDDIYEFASKFGER 259
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L+++ D+LT NRI+ QR V+IG V EDA +GFSGVM+RGSG WDLRKSQPY+ Y +
Sbjct: 260 LDEVEDVLTTNRIWVQRTVDIGVVSAEDALNYGFSGVMLRGSGIKWDLRKSQPYDAYDLV 319
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FD+PIG GDCYDRYL R+ EMR+S++II QC+N++ G + D K+ PP R +
Sbjct: 320 EFDVPIGTKGDCYDRYLCRVEEMRQSLRIIDQCLNQMPA----GEIKTDDAKLTPPSRGE 375
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK SME+LIHHFKL+T+GY VP G Y AVEAPKGEFG+Y++SDG ++PYRCKI+APG+A
Sbjct: 376 MKHSMEALIHHFKLFTQGYQVPPGATYTAVEAPKGEFGLYVVSDGSSRPYRCKIKAPGFA 435
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HL A++ + + H LADV AI+G+LD+VFGE+DR
Sbjct: 436 HLAALDKIGRHHMLADVVAIIGTLDVVFGEIDR 468
>gi|300113268|ref|YP_003759843.1| NADH dehydrogenase I subunit D [Nitrosococcus watsonii C-113]
gi|299539205|gb|ADJ27522.1| NADH dehydrogenase I, D subunit [Nitrosococcus watsonii C-113]
Length = 417
Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats.
Identities = 237/418 (56%), Positives = 299/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ ++FT+NFGPQHPAAHGVLRL+LE+DGEI++R DPH+GLLHR TEKL E+K F Q++
Sbjct: 2 AEIQNFTLNFGPQHPAAHGVLRLVLEMDGEIIQRADPHVGLLHRATEKLAESKPFNQSIG 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EH Y A+EKLLGIE P+R Q IR ++ EI RIL+HL+ + +D+
Sbjct: 62 YMDRLDYVSMMCSEHGYVKAIEKLLGIEPPLRAQYIRTMFDEITRILNHLMWLGAHGLDI 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+T L+ F ERE LM YE SG+RMHA Y+RPGGV++D+P +
Sbjct: 122 GAMTVFLYCFREREDLMDCYEAVSGARMHATYYRPGGVYRDLPETMPGYQLSKWHNEKEI 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP+ +++ LLT NRI+KQR V IG V E A GF+
Sbjct: 182 AALNRNREGSLLDFIEDFTTRFPTCVDEYETLLTDNRIWKQRTVGIGVVTPERALQLGFT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG WDLRK QPY Y ++DFDIP+G +GDCYDRYLVR+ EMR+S +IIRQCV+
Sbjct: 242 GPMLRGSGVEWDLRKKQPYAVYDQVDFDIPVGVNGDCYDRYLVRIEEMRQSNQIIRQCVD 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV ++ K+ P R +MK ME LIHHFKL+TEGY VP GE YAAVEAPKG
Sbjct: 302 WL--RKNPGPVIVNNYKVAAPPREEMKNDMEVLIHHFKLFTEGYCVPEGEAYAAVEAPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFGVYLISDG NKPYR KIRAPG+AHL AM+ + +GH LADV AI+G++DIVFGE+DR
Sbjct: 360 EFGVYLISDGANKPYRLKIRAPGFAHLAAMDEMVQGHMLADVVAIIGTMDIVFGEIDR 417
>gi|295676040|ref|YP_003604564.1| NADH dehydrogenase I, D subunit [Burkholderia sp. CCGE1002]
gi|295435883|gb|ADG15053.1| NADH dehydrogenase I, D subunit [Burkholderia sp. CCGE1002]
Length = 417
Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats.
Identities = 236/418 (56%), Positives = 300/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E+KTF+Q+VP
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESKTFIQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EH Y LA+EKLLGI++P+R Q IRVL+ E+ R+L+HL+ + A+DV
Sbjct: 62 YMDRLDYVSMMANEHGYVLAIEKLLGIDVPLRAQYIRVLFDEVTRVLNHLMWIGAHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNAKAL 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP +++ LLT NRI+KQR V IG V E A G +
Sbjct: 182 SKMNENRQGSLLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQLGMT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG WDLRK QPYE Y +LDFDIP+G +GDCYDRYLVR+ EMR+S +I +QC+
Sbjct: 242 GAMLRGSGVEWDLRKKQPYEVYDKLDFDIPVGVNGDCYDRYLVRVEEMRQSCRIAKQCIE 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ PP R MK +ME LIHHFKL+TEG+HVP GE YAAVE PKG
Sbjct: 302 WL--RKNPGPVMTDNHKVAPPSRVGMKSNMEDLIHHFKLFTEGFHVPEGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YLISDG NKPYR KIRAPGYAHL +++ + +GH +AD I+G+ DIVFGEVDR
Sbjct: 360 EFGIYLISDGANKPYRLKIRAPGYAHLSSLDEMARGHMIADAVTIIGTQDIVFGEVDR 417
>gi|86137597|ref|ZP_01056174.1| NADH dehydrogenase delta subunit [Roseobacter sp. MED193]
gi|85825932|gb|EAQ46130.1| NADH dehydrogenase delta subunit [Roseobacter sp. MED193]
Length = 404
Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats.
Identities = 291/394 (73%), Positives = 336/394 (85%), Gaps = 3/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++K R+F INFGPQHPAAHGVLRL+LELDGEIVER DPHIGLLHRGTEKL+E++T+LQ +
Sbjct: 14 EQKIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNL 73
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYVAPMNQEHA+ LA+EKL G+E+P RG LIRVLYSEIGRIL+HLLNVTTQAMD
Sbjct: 74 PYFDRLDYVAPMNQEHAWCLAIEKLTGVEVPRRGSLIRVLYSEIGRILNHLLNVTTQAMD 133
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTPPLWGFEEREKLMVFYERA G+R+HAAYFRPGGVHQDIP +L++DI W FP
Sbjct: 134 VGALTPPLWGFEEREKLMVFYERACGARLHAAYFRPGGVHQDIPDDLLDDIDLWALEFPK 193
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L DI LLT NRIFKQRN +IG V ++ WGFSGVM+RGSG AWDLR++QPYECY E
Sbjct: 194 VLADIDGLLTENRIFKQRNCDIGVVTEQEILDWGFSGVMVRGSGMAWDLRRAQPYECYDE 253
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF IP+GK+GDCYDRYLVRM EMR+S+ IIRQ + +L + K+ PPKR
Sbjct: 254 FDFQIPVGKNGDCYDRYLVRMEEMRQSLSIIRQAIAKLREATGDV---LARGKLTPPKRG 310
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
DMK SMESLIHHFKLYTEG+HVP GEVYAAVEAPKGEFGVYL++DG NKPYR KIRAPG+
Sbjct: 311 DMKTSMESLIHHFKLYTEGFHVPAGEVYAAVEAPKGEFGVYLVADGSNKPYRSKIRAPGF 370
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQAM+ + KGHQLADV+AI+G++D+VFGE+DR
Sbjct: 371 LHLQAMDHVAKGHQLADVAAIIGTMDVVFGEIDR 404
>gi|209518512|ref|ZP_03267333.1| NADH dehydrogenase I, D subunit [Burkholderia sp. H160]
gi|209501057|gb|EEA01092.1| NADH dehydrogenase I, D subunit [Burkholderia sp. H160]
Length = 417
Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats.
Identities = 236/418 (56%), Positives = 299/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E KTF+Q+VP
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEGKTFIQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EH Y LA+EKLLGI++P+R Q IRVL+ E+ R+L+HL+ + A+DV
Sbjct: 62 YMDRLDYVSMMVNEHGYVLAIEKLLGIDVPVRAQYIRVLFDEVTRVLNHLMWIGAHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNAKAL 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP +++ LLT NRI+KQR V IG V E A G +
Sbjct: 182 SKMNENRQGSLLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQLGMT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG WDLRK QPYE Y +LDFDIP+G +GDCYDRYLVR+ EMR+S +I +QC+
Sbjct: 242 GAMLRGSGVEWDLRKKQPYEVYDKLDFDIPVGVNGDCYDRYLVRVEEMRQSSRIAKQCIE 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ PP R MK +ME LIHHFKL+TEG+HVP GE YAAVE PKG
Sbjct: 302 WL--RKNPGPVMTDNHKVAPPSRVGMKSNMEDLIHHFKLFTEGFHVPEGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YLISDG NKPYR KIRAPGYAHL +++ + +GH +AD I+G+ DIVFGEVDR
Sbjct: 360 EFGIYLISDGANKPYRLKIRAPGYAHLSSLDEMARGHMIADAVTIIGTQDIVFGEVDR 417
>gi|289207896|ref|YP_003459962.1| NADH dehydrogenase I, D subunit [Thioalkalivibrio sp. K90mix]
gi|288943527|gb|ADC71226.1| NADH dehydrogenase I, D subunit [Thioalkalivibrio sp. K90mix]
Length = 417
Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats.
Identities = 237/417 (56%), Positives = 297/417 (71%), Gaps = 27/417 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ R+FT+NFGPQHP+AHGVLRL+LE+DGE+V+R DPHIGLLHRGTEKL E+K + Q++ Y
Sbjct: 3 EIRNFTLNFGPQHPSAHGVLRLVLEMDGEVVQRADPHIGLLHRGTEKLAESKPYNQSIGY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDYV+ M EH Y LA+EKLL IE P+R Q IRV++ EI RIL+HL+ + A+D+G
Sbjct: 63 MDRLDYVSMMANEHGYVLAMEKLLQIEAPLRAQYIRVMFDEITRILNHLMWLGAHALDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL--------------- 169
A+ L+ F ERE LM YE SG+RMHA Y+RPGGV +D+P +
Sbjct: 123 AMAVFLYAFREREDLMDCYEAVSGARMHATYYRPGGVARDLPGTMPQYQPSSWKSQDVVD 182
Query: 170 ----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
++ I + + FP +++ LLT NRI+KQR V IG V E A GF+G
Sbjct: 183 DLNRIRQGSLLDFIEAFTERFPGCVDEYETLLTDNRIWKQRTVGIGVVDPERAMQLGFTG 242
Query: 220 VMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR 279
M+RGSG WDLRK QPYE Y LDFDIP+G +GDCYDRYLVR+ EMR+S +IIRQCV+
Sbjct: 243 PMLRGSGIEWDLRKKQPYEVYDRLDFDIPVGVNGDCYDRYLVRIEEMRQSNRIIRQCVDW 302
Query: 280 LLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGE 339
L + GPV D KI PPKR +MK ME+LIHHFKL+TEG +P GE YAAVE PKGE
Sbjct: 303 L--RQNPGPVLLEDHKITPPKREEMKADMEALIHHFKLFTEGMCLPEGEAYAAVEHPKGE 360
Query: 340 FGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
FGVYL+SDG NKPYR K+R PG+ HL A++ + +GH LADV AI+G+ DIVFGE+DR
Sbjct: 361 FGVYLVSDGSNKPYRLKVRPPGFVHLSALDEMARGHMLADVVAIIGTQDIVFGEIDR 417
>gi|319761765|ref|YP_004125702.1| NADH dehydrogenase i, d subunit [Alicycliphilus denitrificans BC]
gi|330826545|ref|YP_004389848.1| NADH dehydrogenase I subunit D [Alicycliphilus denitrificans K601]
gi|317116326|gb|ADU98814.1| NADH dehydrogenase I, D subunit [Alicycliphilus denitrificans BC]
gi|329311917|gb|AEB86332.1| NADH dehydrogenase I, D subunit [Alicycliphilus denitrificans K601]
Length = 417
Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats.
Identities = 231/418 (55%), Positives = 300/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++++NFGPQHPAAHGVLRL+LELDGE+V+R DPH+GLLHR TEKL E KT++Q++P
Sbjct: 2 AEIKNYSLNFGPQHPAAHGVLRLVLELDGEVVQRADPHVGLLHRATEKLAEYKTYIQSLP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M E AY LA+EK+LG+E+P+R + IR ++ EI R+L+HL+ + + MD+
Sbjct: 62 YMDRLDYVSMMCNEQAYCLAIEKMLGVEVPLRAKYIRTMFGEITRLLNHLMWLGSNGMDL 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP---------------- 167
GA T ++ F ERE L YE SG+RMHAAYFRPGGV++D+P
Sbjct: 122 GASTVLMYTFRERETLFDMYEAVSGARMHAAYFRPGGVYRDLPDTMAQLKPSKVRNAKAL 181
Query: 168 ---------ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
L++ I +C FP +++ LLT NRI+KQR V IG V E A S
Sbjct: 182 EEFNRNRQGGLLDFIDDFCAKFPGYVDEYETLLTDNRIWKQRTVGIGVVSAERALNLSMS 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
GVM+RGSG AWDLRK QPY+ Y ++FDIP+GK+GDCYDRYLVR+ EMR+S +II+QCV+
Sbjct: 242 GVMLRGSGVAWDLRKKQPYDAYDRVEFDIPVGKNGDCYDRYLVRVEEMRQSNRIIKQCVD 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + KI PP R MK ME LIHHFKL++EG+ VP GE YAAVE PKG
Sbjct: 302 WL--RANPGPVIVDNYKIAPPPRERMKTGMEDLIHHFKLFSEGFRVPEGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YL+SDG NKPYR KIRAPG+AHL A + L +GH +AD A++G++DIVFGE+DR
Sbjct: 360 EFGIYLVSDGANKPYRLKIRAPGFAHLAAYDELTRGHMIADAVAVIGTMDIVFGEIDR 417
>gi|78485165|ref|YP_391090.1| NADH dehydrogenase subunit D [Thiomicrospira crunogena XCL-2]
gi|123555685|sp|Q31HF7|NUOD_THICR RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|78363451|gb|ABB41416.1| NADH dehydrogenase chain D [Thiomicrospira crunogena XCL-2]
Length = 417
Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats.
Identities = 239/418 (57%), Positives = 300/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ R++T+NFGPQHP+AHGVLRL+LELDGE + R DPHIGLLHRGTEKL E K F Q++
Sbjct: 2 SEIRNYTLNFGPQHPSAHGVLRLVLELDGETIVRSDPHIGLLHRGTEKLAEYKPFNQSIG 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY + +EK+LGIE+P R Q IRV++ EI RIL+HL+ + A+D+
Sbjct: 62 YMDRLDYVSMMANEHAYVMGIEKMLGIEVPERAQYIRVMFDEITRILNHLMWLGAHALDI 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+T L+ F ERE LM YE SG+RMHA Y+RPGGV++D+P +
Sbjct: 122 GAMTVFLYAFREREDLMDCYEAVSGARMHATYYRPGGVYRDLPDTMAKYEESKWHSGKKL 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + + FP +++ LLT NRI+KQR V+IG V E A GF+
Sbjct: 182 DQLNETREGSLLDFIEAFTERFPGYVDEYETLLTDNRIWKQRTVDIGIVSPERALQLGFT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG AWDLRK QPYE Y +LDFDIP+G GDCYDRYLVR+ EMRES KII+QCV
Sbjct: 242 GPMLRGSGIAWDLRKKQPYEVYDKLDFDIPVGATGDCYDRYLVRVAEMRESNKIIKQCVK 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L K GPV + D K+ PP R D K +ME+LIHHFKL+TEGY VP GE Y AVE PKG
Sbjct: 302 WL--KENPGPVISDDHKVTPPSREDAKSNMEALIHHFKLFTEGYSVPEGESYTAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+Y++SDG NKPYR K+RAPG+AHL +++ + KGH +ADV AI+G+ DIVFGEVDR
Sbjct: 360 EFGIYMVSDGANKPYRLKVRAPGFAHLASLDEMAKGHMIADVVAIIGTQDIVFGEVDR 417
>gi|146415140|ref|XP_001483540.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor [Meyerozyma guilliermondii ATCC 6260]
gi|146392013|gb|EDK40171.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor [Meyerozyma guilliermondii ATCC 6260]
Length = 476
Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats.
Identities = 237/393 (60%), Positives = 303/393 (77%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K R FTINFGPQHPAAHGVLRLILEL GE + R DPH+GLLHRGTEKLIE+KT++QA+P
Sbjct: 88 TKIRHFTINFGPQHPAAHGVLRLILELHGEEIVRSDPHVGLLHRGTEKLIESKTYMQALP 147
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M E +ALAVEKLL +E+P+R + IR L+ EI R+L+H ++V + MDV
Sbjct: 148 YFDRLDYVSMMTNELVFALAVEKLLNVEVPLRAKYIRTLFGEITRVLNHCMSVLSHIMDV 207
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G LTP LWGFEEREKLM FYER SG+R+H+AY RPGGV QD+P L++DI W F
Sbjct: 208 GGLTPFLWGFEEREKLMEFYERVSGARLHSAYVRPGGVAQDLPAGLLDDIYMWATQFGDR 267
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
++++ +L+T NRI++ R ++G V EDA + SGVM+RGSG A+D+RK+QPY+ Y +
Sbjct: 268 IDEVEELVTDNRIWQARTKDVGVVSAEDALNYSLSGVMLRGSGIAYDIRKAQPYDAYELV 327
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DFDIP+G++GDCYDRYL+RM E R+S++II QC+N + GPV D KI PP R
Sbjct: 328 DFDIPVGQNGDCYDRYLIRMAEFRQSLRIIEQCINDM----PEGPVKVEDFKISPPARQV 383
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK ME+LIHHF L+T+GY VP GE Y A+EAPKGE VY++SDG +PYRCKIRAPG+A
Sbjct: 384 MKEDMEALIHHFLLFTKGYAVPPGETYTAIEAPKGEMAVYVVSDGSERPYRCKIRAPGFA 443
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HL A + + +G+ LAD AI+G++D+VFGEVDR
Sbjct: 444 HLGAFDHISRGNLLADAVAIIGTMDLVFGEVDR 476
>gi|319794665|ref|YP_004156305.1| NADH dehydrogenase i, d subunit [Variovorax paradoxus EPS]
gi|315597128|gb|ADU38194.1| NADH dehydrogenase I, D subunit [Variovorax paradoxus EPS]
Length = 417
Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats.
Identities = 226/418 (54%), Positives = 301/418 (72%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E++TF+Q++P
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESRTFIQSLP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M+ EHAY LA+E+++G+++PIR Q IRV+++EI R+L+HLL + +D
Sbjct: 62 YMDRLDYVSMMSNEHAYCLAIERMMGLDVPIRAQYIRVMFAEITRLLNHLLWLGAHGLDC 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ ++ F ERE L YE SG+RMHAAYFRPGGV++D+P +
Sbjct: 122 GAMNMLIYCFREREDLFDMYEAVSGARMHAAYFRPGGVYRDLPDAMPQYKVSKIKNAKAI 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I +C FP +++ LLT NRI+KQR V IG V E A GF+
Sbjct: 182 ERLNENRQGSLLDFIDDFCKRFPKMVDEYETLLTDNRIWKQRTVGIGVVTPERALNLGFT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG WDLRK QPY+ Y ++ FD+P+GK GDCYDRYLVR+ EMR++ KII+QC
Sbjct: 242 GPMLRGSGIEWDLRKKQPYDVYDQMQFDVPVGKTGDCYDRYLVRVEEMRQANKIIQQCSA 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ P R MK +ME LIHHFKL+TEG+HVP GE YAAVE PKG
Sbjct: 302 WL--RVNPGPVITDNHKVAAPARESMKANMEELIHHFKLFTEGFHVPEGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YL+SDG NKPYR KIRAPG+ HL A++ + +GH +AD A++G++DIVFGE+DR
Sbjct: 360 EFGIYLVSDGANKPYRLKIRAPGFPHLAALDEMSRGHMIADAVAVIGTMDIVFGEIDR 417
>gi|294669095|ref|ZP_06734181.1| NADH dehydrogenase, D subunit [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291309087|gb|EFE50330.1| NADH dehydrogenase, D subunit [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 418
Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats.
Identities = 247/418 (59%), Positives = 308/418 (73%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K R++TINFGPQHPAAHGVLR+ILEL+GE + R DPHIGLLHRGTEKL ET+T+LQA+P
Sbjct: 3 TKLRNYTINFGPQHPAAHGVLRMILELEGETIVRADPHIGLLHRGTEKLAETRTYLQALP 62
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M E AY LA+EKLLGI+IPIR + IR +++E+ RIL+HL+ + + A+D+
Sbjct: 63 YMDRLDYVSMMVNEQAYCLAIEKLLGIDIPIRAKYIRTMFAEVTRILNHLMGIGSHALDI 122
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP---------------- 167
GA+T L+ F +RE+LM YE SG+RMHAAY+RPGGV++D+P
Sbjct: 123 GAMTAILYAFRDREELMDLYEAVSGARMHAAYYRPGGVYRDLPDFMPKYEASKFRNAKVL 182
Query: 168 ---------ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
+++ I +C FP ++ + LLT NRI+KQR V IG V E A GF+
Sbjct: 183 KELNEAREGTMLDFIEAFCQRFPGRIDTLETLLTDNRIWKQRTVGIGVVSPERALQKGFT 242
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
GVM+RGSG WD+RK QPYE Y ++DFDIP+G +GDCYDRYL R+ EMR+SV+II+QCV+
Sbjct: 243 GVMLRGSGIEWDVRKKQPYEVYDKMDFDIPVGVNGDCYDRYLCRINEMRQSVRIIQQCVD 302
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV D K+ PPKR +MK ME LIHHFKL+TEG HVP GE Y AVE PKG
Sbjct: 303 WL--RVNPGPVIVDDHKVAPPKRTEMKFGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKG 360
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFGVY+ISDG NKPYR KIRAPG+AHLQ M+ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 361 EFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|17546778|ref|NP_520180.1| NADH dehydrogenase subunit D [Ralstonia solanacearum GMI1000]
gi|17429078|emb|CAD15766.1| probable nadh dehydrogenaseI(chain d) oxidoreductase protein
[Ralstonia solanacearum GMI1000]
Length = 417
Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats.
Identities = 234/418 (55%), Positives = 300/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E KT++Q VP
Sbjct: 2 ADIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTWIQNVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY +A+E+LLGI++P+R Q IRV++ EI RI++HL+ + A+DV
Sbjct: 62 YMDRLDYVSMMVNEHAYVMAIERLLGIDVPLRAQYIRVMFDEITRIMNHLMWIGAHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE L YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMAVFLYAFREREDLFDMYEAVSGARMHAAYYRPGGVYRDLPDSMPQYKASKVRNEKAL 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + D FP+ +++ LLT NRI+KQR V IG V E A G +
Sbjct: 182 AAMNETRSGSLLDFIEAFTDRFPTYVDEYETLLTDNRIWKQRLVGIGVVTPERALQKGMT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG AWD+RK QPYE Y +DFDIP+G +GDCYDRYLVR+ EMR+S +I+RQCV
Sbjct: 242 GPMLRGSGIAWDVRKKQPYEVYDRVDFDIPVGVNGDCYDRYLVRVEEMRQSNRIVRQCVE 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ PP R +MK +ME LIHHFKL+TEG HVP GE YAAVE PKG
Sbjct: 302 WL--RKNPGPVITDNHKVAPPSRVEMKTNMEELIHHFKLFTEGMHVPEGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+Y+ISDG NKPYR KIRAPG+AHL A++ + KGH +AD I+G+ DIVFGE+DR
Sbjct: 360 EFGIYVISDGANKPYRLKIRAPGFAHLAALDEMAKGHMIADAVTIIGTQDIVFGEIDR 417
>gi|17555284|ref|NP_498423.1| NADH Ubiquinone oxidoreductase Fe-S protein family member
(nduf-2.2) [Caenorhabditis elegans]
gi|470339|gb|AAC77506.1| Nadh ubiquinone oxidoreductase fe-s protein protein 2.2, partially
confirmed by transcript evidence [Caenorhabditis
elegans]
Length = 474
Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats.
Identities = 228/394 (57%), Positives = 303/394 (76%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+K + +NFGPQHPAAHGVLRL+L+L+GE++ + PHIGLLHR TEKLIE KT+ QA+
Sbjct: 85 EKNLENMILNFGPQHPAAHGVLRLVLKLEGEVIIKAIPHIGLLHRATEKLIEHKTYTQAL 144
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E A++LA+EKLLGI++P R + IR+L+ E+ RI +H++ +TT A+D
Sbjct: 145 PYFDRLDYVSMMCNEQAFSLAIEKLLGIDVPPRAKYIRILFGELTRIQNHIMGITTHALD 204
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP W FEEREKL F ER SG+RMHA Y RPGGV D+P L++DI W FP+
Sbjct: 205 VGAMTPFFWMFEEREKLFEFSERVSGARMHANYVRPGGVAWDLPVGLMDDIYDWAVKFPA 264
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++++ D+LT NRI+K R V+IG V DA WGFSGVM+RGSG D+RK++PY+ Y++
Sbjct: 265 RIDELEDMLTENRIWKARTVDIGLVSASDALNWGFSGVMVRGSGIKQDVRKTEPYDAYAD 324
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++FD+PIG GDCYDRYL R+ EMR+S+ I+ QC+N++ G + + D K+VPPKRA
Sbjct: 325 MEFDVPIGTKGDCYDRYLCRVEEMRQSLNIVHQCLNKM----PTGEIKSDDHKVVPPKRA 380
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK +MESLIHHFK +TEG+ VP G Y +EAPKGEFGVYL++DG KPYRC IRAPG+
Sbjct: 381 EMKENMESLIHHFKFFTEGFQVPPGATYVPIEAPKGEFGVYLVADGTGKPYRCFIRAPGF 440
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL A+ +C +AD+ A++G++DIVFGEVDR
Sbjct: 441 AHLAAIHDVCYMSLIADIVAVIGTMDIVFGEVDR 474
>gi|302655857|ref|XP_003019710.1| hypothetical protein TRV_06252 [Trichophyton verrucosum HKI 0517]
gi|291183452|gb|EFE39065.1| hypothetical protein TRV_06252 [Trichophyton verrucosum HKI 0517]
Length = 473
Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats.
Identities = 237/383 (61%), Positives = 297/383 (77%), Gaps = 4/383 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+K R +T+NFGPQHPAAHGVLRLILEL+GE + R DPH+GLLHRGTEKLIE KT++QA+P
Sbjct: 85 RKIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYMQALP 144
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M E ++LAVEKLL IEIP R + IR ++ EI RIL+HL++V + AMDV
Sbjct: 145 YFDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKWIRTMFGEITRILNHLMSVLSHAMDV 204
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP LWGFEEREKLM FYER SG+R+HAAY RPGGVHQDIP L++DI W F
Sbjct: 205 GALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPLGLLDDIYQWATQFADR 264
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ +LLT NRI+K R V +G V +A +GFSGVM+RGSG WD+RKSQPY+ Y ++
Sbjct: 265 IDETEELLTDNRIWKARTVGVGVVTAAEALNYGFSGVMLRGSGVPWDIRKSQPYDAYGQV 324
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FD+P+G +GDCYDRYL RM E R+S++II QC+N++ GPV D KI PP R
Sbjct: 325 EFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNKMPA----GPVRVEDYKISPPPRIA 380
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK +ME+LIHHF L+T+GY VP GE Y+A+EAPKGE V+L+SDG +PYRCKIRAPG+A
Sbjct: 381 MKENMEALIHHFLLFTKGYTVPPGETYSAIEAPKGEMAVFLVSDGSERPYRCKIRAPGFA 440
Query: 364 HLQAMEFLCKGHQLADVSAILGS 386
HL + L +GH LAD AI+G+
Sbjct: 441 HLGCFDQLSRGHLLADAVAIIGT 463
>gi|319738257|emb|CBJ18033.1| NADH dehydrogenase subunit 7 [Ectocarpus siliculosus]
Length = 398
Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats.
Identities = 257/388 (66%), Positives = 304/388 (78%), Gaps = 4/388 (1%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
FTINFGPQHPAAHGVLRLILEL+GE+V+R DPHIGLLHRGTEKLIE KT+ QA+PYFDRL
Sbjct: 15 FTINFGPQHPAAHGVLRLILELNGEVVQRADPHIGLLHRGTEKLIEAKTYFQALPYFDRL 74
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
DYV+ M QEH YALAVE LL I IP R Q IRVL++EI R+L+HLL V AMDVGA+TP
Sbjct: 75 DYVSMMCQEHTYALAVENLLQISIPKRAQYIRVLFAEITRLLNHLLAVGCHAMDVGAMTP 134
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
LW FEEREKLM FYER SG+RMHA+YFRPGGV QDI LV+DI + F L++I
Sbjct: 135 FLWAFEEREKLMEFYERVSGARMHASYFRPGGVSQDISLGLVDDIFAFVVQFGQRLDEIE 194
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
++LT NRI+++R V+IG V ++A WGFSGVM+RGSG WDLRK++PYE YS+L+F
Sbjct: 195 EMLTDNRIWQERLVDIGVVSAQEAIDWGFSGVMLRGSGVRWDLRKNEPYEIYSDLNFQGV 254
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
+GK GDCYDRYL R+ EMR+S+ II QC+N + G V D KI PP R ++K+SM
Sbjct: 255 VGKTGDCYDRYLARVEEMRQSLSIIYQCLNNM----PKGSVKVDDAKISPPSRTEVKQSM 310
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
ESLIHHFKLYTEG VP GE Y A EAPKGEFGVYL+SD N+PYRCKI+APG+AHLQ +
Sbjct: 311 ESLIHHFKLYTEGVFVPAGETYTATEAPKGEFGVYLVSDSSNRPYRCKIKAPGFAHLQGL 370
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVDR 396
F+ H LADV I+G+ DIVFGEVDR
Sbjct: 371 NFMASSHMLADVVTIIGTQDIVFGEVDR 398
>gi|195995589|ref|XP_002107663.1| conserved hypothetical protein [Trichoplax adhaerens]
gi|190588439|gb|EDV28461.1| conserved hypothetical protein [Trichoplax adhaerens]
Length = 418
Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats.
Identities = 241/389 (61%), Positives = 309/389 (79%), Gaps = 4/389 (1%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
S+T+NFGPQHPAAHGVLRL++EL+GE V+R DPHIGLLHRGTEKL E KT+LQA+PYFDR
Sbjct: 34 SYTVNFGPQHPAAHGVLRLVMELNGETVKRCDPHIGLLHRGTEKLCEYKTYLQALPYFDR 93
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
LDYV+ M E Y+LAVEKLL I+IP R + IRVL++EI R+L+H++ VTT A+DVGA+T
Sbjct: 94 LDYVSMMCNEQCYSLAVEKLLNIQIPERAKFIRVLFAEISRLLNHIMAVTTHALDVGAMT 153
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
P W FEEREK+M FYER SG+R+HAAY RPGGV QD+P L++DI +C +F ++++
Sbjct: 154 PFFWMFEEREKMMEFYERVSGARLHAAYVRPGGVAQDLPLGLMDDIYSFCKNFSQRIDEL 213
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
++LT NRI++ R V+IG V +A FSGVM+RGSG WDLRK QPY+ Y +++FDI
Sbjct: 214 EEMLTNNRIWRDRTVDIGIVTAREALDNSFSGVMLRGSGIKWDLRKVQPYDAYDKVEFDI 273
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
PIG +GDCYDRYL R+ EMR+S++II QC+N++ G V D KI PP+RA+MK S
Sbjct: 274 PIGTNGDCYDRYLCRVEEMRQSLRIIMQCLNQM----PEGEVRVDDAKISPPRRAEMKDS 329
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
MESLIHHFKL+TEGY+VP G Y A E+PKGE VY++SDG +KPYR +IRAPG+AHL A
Sbjct: 330 MESLIHHFKLFTEGYNVPPGATYTATESPKGELAVYVVSDGSSKPYRVRIRAPGFAHLAA 389
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ + + H LADV AILG++D+VFGEVDR
Sbjct: 390 VDKVARNHFLADVVAILGTMDVVFGEVDR 418
>gi|302677172|ref|XP_003028269.1| hypothetical protein SCHCODRAFT_83235 [Schizophyllum commune H4-8]
gi|300101957|gb|EFI93366.1| hypothetical protein SCHCODRAFT_83235 [Schizophyllum commune H4-8]
Length = 387
Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats.
Identities = 250/390 (64%), Positives = 308/390 (78%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
R FT+NFGPQHPAAHGVLR+ILEL+GE V R DPHIGLLHRGTEKLIE KT+ QA+PYFD
Sbjct: 2 RHFTVNFGPQHPAAHGVLRMILELNGEEVLRADPHIGLLHRGTEKLIEFKTYTQALPYFD 61
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYV+ M E Y++AVEKLL IE+P R + IR L+ EI RIL+HL+ V T AMDVGAL
Sbjct: 62 RLDYVSMMTNELCYSMAVEKLLNIEVPARAKWIRTLFGEITRILNHLMAVLTHAMDVGAL 121
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP LWGFEEREKLM FYER SG+R+HAAY RPGGV D+P L++DI W F S +++
Sbjct: 122 TPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVAFDLPHGLLDDIFKWATQFSSRVDE 181
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ +++TGNRI+KQR +N+G V EDA + FSGVM+RGSG WDLRK PY+ Y +++FD
Sbjct: 182 VEEVVTGNRIWKQRTINVGRVTAEDAQRFSFSGVMLRGSGVPWDLRKVSPYDAYDQVEFD 241
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
IP+GK+GDCYDRYL R+ EMRES++II QC+N++ G D K+VPP RA MK
Sbjct: 242 IPVGKNGDCYDRYLCRVQEMRESLRIISQCLNKM----PTGAYKVDDHKLVPPPRASMKE 297
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
SMESLIHHFKL++EGY VP GE Y+A+EAPKGE GVYL+SDG N+PYRC IRAPG+AHL
Sbjct: 298 SMESLIHHFKLFSEGYSVPPGETYSAIEAPKGEMGVYLVSDGSNRPYRCSIRAPGFAHLA 357
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+F+ + H LAD A++G++D+VFGEVDR
Sbjct: 358 GSDFILRNHMLADAVAVIGTMDLVFGEVDR 387
>gi|68469164|ref|XP_721369.1| potential mitochondrial Complex I, NUCM_49kd subunit [Candida
albicans SC5314]
gi|68470189|ref|XP_720856.1| potential mitochondrial Complex I, NUCM_49kd subunit [Candida
albicans SC5314]
gi|77022732|ref|XP_888810.1| hypothetical protein CaO19_6531 [Candida albicans SC5314]
gi|46442746|gb|EAL02033.1| potential mitochondrial Complex I, NUCM_49kd subunit [Candida
albicans SC5314]
gi|46443284|gb|EAL02567.1| potential mitochondrial Complex I, NUCM_49kd subunit [Candida
albicans SC5314]
gi|76573623|dbj|BAE44707.1| hypothetical protein [Candida albicans]
gi|238883349|gb|EEQ46987.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Candida albicans
WO-1]
Length = 478
Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats.
Identities = 240/393 (61%), Positives = 300/393 (76%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K R FTINFGPQHPAAHGVLRLILEL GE + R DPH+GLLHRGTEKLIE+KT++QA+P
Sbjct: 90 TKIRHFTINFGPQHPAAHGVLRLILELHGEEIVRSDPHVGLLHRGTEKLIESKTYMQALP 149
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M E +ALAVEKLL +E+P+R + IR L+ EI RIL+H ++V T MDV
Sbjct: 150 YFDRLDYVSMMTNELVFALAVEKLLNVEVPLRAKYIRTLFGEITRILNHCMSVLTHIMDV 209
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G LTP LWGFEEREKLM FYER SG+R+H AYFRPGGV QD+P L++DI W F
Sbjct: 210 GGLTPFLWGFEEREKLMEFYERVSGARLHTAYFRPGGVSQDLPAGLLDDIYMWATQFGDR 269
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
++++ +L T NRI+K R + +G V EDA + SGVM+RGSG +D+RKSQPY+ Y +
Sbjct: 270 IDEVEELCTDNRIWKDRTIGVGVVSAEDALNYSLSGVMLRGSGIPFDIRKSQPYDAYDLV 329
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DFDI +G +GDCYDRYL+RM E R+S++II QC+N + GPV D KI PP R+
Sbjct: 330 DFDIAVGINGDCYDRYLIRMAEFRQSLRIIFQCINDI----PEGPVKVEDYKISPPSRSL 385
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK ME+LIHHF L+T+GY VP GE Y A+EAPKGE VY++SDG +PYRCKIRAPG+A
Sbjct: 386 MKEDMEALIHHFLLFTKGYAVPQGETYTAIEAPKGEMAVYVVSDGSERPYRCKIRAPGFA 445
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HL A + + +G+ LAD AI+G++D+VFGEVDR
Sbjct: 446 HLGAFDHIARGNLLADAVAIIGTMDLVFGEVDR 478
>gi|292493665|ref|YP_003529104.1| NADH dehydrogenase I, D subunit [Nitrosococcus halophilus Nc4]
gi|291582260|gb|ADE16717.1| NADH dehydrogenase I, D subunit [Nitrosococcus halophilus Nc4]
Length = 417
Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats.
Identities = 240/418 (57%), Positives = 302/418 (72%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ R+FT+NFGPQHPAAHGVLRL+LE+DGE+++R DPH+GLLHR TEKL E+K F Q++
Sbjct: 2 AEIRNFTLNFGPQHPAAHGVLRLVLEMDGEVIQRADPHVGLLHRATEKLAESKPFNQSIG 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EH Y A+EKLLGIE P+R Q IRV++ EI RIL+HL+ + +D+
Sbjct: 62 YMDRLDYVSMMCNEHGYVSAIEKLLGIEPPLRAQYIRVMFDEITRILNHLMWLGAHGLDI 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+T L+ F ERE LM YE ASG+RMHA Y+RPGGV++D+P +
Sbjct: 122 GAMTVFLYCFREREDLMDCYEAASGARMHATYYRPGGVYRDLPDTMPQYQPSKWHDEKEI 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP +++ LLT NRI+KQR V IG V+ E A GF+
Sbjct: 182 AALNQNRQGSLLDFIEDFAARFPRCVDEYETLLTDNRIWKQRTVGIGVVEPERALQLGFT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG WDLRK QPY Y LDFDIP+G +GDCYDRYLVRM EMR+S +II+QCV+
Sbjct: 242 GPMLRGSGVEWDLRKKQPYAVYDRLDFDIPVGVNGDCYDRYLVRMEEMRQSNRIIQQCVD 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ PP R DMK ME+LIHHFKL+TEGY VP GEVYAAVEAPKG
Sbjct: 302 WL--RKNPGPVMVDNYKVAPPSREDMKDDMEALIHHFKLFTEGYCVPEGEVYAAVEAPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFGVYLISDG NKPYR K+RAPG+AH+ AM+ + +GH LADV A++G++DIVFGE+DR
Sbjct: 360 EFGVYLISDGANKPYRLKVRAPGFAHIAAMDEMVQGHMLADVVAVIGTMDIVFGEIDR 417
>gi|114800277|ref|YP_760449.1| NADH dehydrogenase subunit D [Hyphomonas neptunium ATCC 15444]
gi|123028033|sp|Q0C1E4|NUOD_HYPNA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|114740451|gb|ABI78576.1| NADH-quinone oxidoreductase, D subunit [Hyphomonas neptunium ATCC
15444]
Length = 392
Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats.
Identities = 291/392 (74%), Positives = 333/392 (84%), Gaps = 1/392 (0%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
R FT+NFGPQHPAAHGVLR+IL+LDGEIV RVD HIGLLHRGTEKL+E KT+LQ +PY
Sbjct: 2 DDRKFTLNFGPQHPAAHGVLRMILDLDGEIVTRVDSHIGLLHRGTEKLLEYKTYLQGMPY 61
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
FDRLDY APMNQEHA+ LA+EKLLG+E+P R +IRV+YSEIGRI+SHLLNV T MDVG
Sbjct: 62 FDRLDYCAPMNQEHAWCLAIEKLLGVEVPRRASIIRVMYSEIGRIMSHLLNVGTGVMDVG 121
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
ALTP W FEEREKL VFYERASGSRMHAAYFRPGGVHQD+P L++DI WCD FP L
Sbjct: 122 ALTPITWCFEEREKLCVFYERASGSRMHAAYFRPGGVHQDLPQRLIDDIATWCDQFPGKL 181
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ I L+T NRIFKQRNV+IG V WGFSGVM+RGSG AWDLR+SQPYECYSELD
Sbjct: 182 DQIEGLVTENRIFKQRNVDIGVVDQRTILDWGFSGVMVRGSGLAWDLRRSQPYECYSELD 241
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F +P+G+HGD YDRY+ RM EMRESVKII QC++ L+ K+ GPV + K+ PP+RADM
Sbjct: 242 FKVPVGRHGDNYDRYVCRMDEMRESVKIILQCID-LMAKDGPGPVLLAGSKLSPPRRADM 300
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K SME+LIHHFKLYTEG+HVP GE YAAVEAPKGEFGVYL++DG N+PYR KIRAPGY H
Sbjct: 301 KNSMEALIHHFKLYTEGFHVPEGECYAAVEAPKGEFGVYLVADGTNRPYRAKIRAPGYPH 360
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
LQAM++LCKGHQLADVSA+LG+LDIVFGE+DR
Sbjct: 361 LQAMDYLCKGHQLADVSAVLGTLDIVFGEIDR 392
>gi|324505397|gb|ADY42321.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 [Ascaris
suum]
Length = 480
Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats.
Identities = 223/396 (56%), Positives = 301/396 (76%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ +K + +NFGPQHPAAHGVLRL+L+L+GE++ + PHIGLLHRGTEKLIE KT+ Q
Sbjct: 89 LREKSLENMVLNFGPQHPAAHGVLRLVLKLEGEVIIKATPHIGLLHRGTEKLIEYKTYTQ 148
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDY++ M E A+ALA+EKLL I++P R + IR L E+ R+ +H++ +TT A
Sbjct: 149 ALPYFDRLDYISMMCNEGAFALAIEKLLRIDVPPRAKFIRTLVYELTRLQNHIMGITTHA 208
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+D+GA+TP W FEEREKL F ER SG+RMHA Y RPGGV D+P ++D+ W F
Sbjct: 209 LDIGAMTPLFWMFEEREKLFEFTERISGARMHANYVRPGGVAWDLPLGWMDDVYDWAVKF 268
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P ++++ D+LT NRI+K R +++G V DA WGFSGVM+RGSG WD+RK+QPY+ Y
Sbjct: 269 PERIDELEDMLTENRIWKARTIDVGIVTASDALNWGFSGVMLRGSGIKWDVRKTQPYDAY 328
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
EL+FD+P+GK+GDCYDRYL R+ EMR+S++++ QC+N++ G + D K+VPPK
Sbjct: 329 EELEFDVPVGKNGDCYDRYLCRVEEMRQSLRLVLQCLNKM----PPGEIKVDDHKVVPPK 384
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R++MK SME+LIHHFK +TEG+ VP G Y VEAPKGEFGVYL++DG KPYRC +RAP
Sbjct: 385 RSEMKESMEALIHHFKFFTEGFQVPPGATYLPVEAPKGEFGVYLLADGTTKPYRCFLRAP 444
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHL + +C +AD+ A++G+LD+VFGEVDR
Sbjct: 445 GFAHLSVIHDICYMSLIADMVAVIGTLDLVFGEVDR 480
>gi|239816480|ref|YP_002945390.1| NADH dehydrogenase subunit D [Variovorax paradoxus S110]
gi|239803057|gb|ACS20124.1| NADH dehydrogenase I, D subunit [Variovorax paradoxus S110]
Length = 417
Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats.
Identities = 225/418 (53%), Positives = 301/418 (72%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E++TF+Q++P
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESRTFIQSLP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M+ EHAY LA+E+++G+++PIR Q IRV+++EI R+L+HLL + +D
Sbjct: 62 YMDRLDYVSMMSNEHAYCLAIERMMGLDVPIRAQYIRVMFAEITRLLNHLLWLGAHGLDC 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ ++ F ERE L YE SG+RMHAAYFRPGGV++D+P +
Sbjct: 122 GAMNMLIYCFREREDLFDMYEAVSGARMHAAYFRPGGVYRDLPDAMPQYKVSKIKNAKAI 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I +C FP +++ LLT NRI+KQR V IG V E A GF+
Sbjct: 182 EKLNENRQGSLLDFIDDFCKRFPGMVDEYETLLTDNRIWKQRTVGIGVVTPERALNLGFT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG WDLRK QPY+ Y ++ FD+P+GK GDCYDRYLVR+ EMR++ +II+QC
Sbjct: 242 GPMLRGSGVEWDLRKKQPYDVYDQMQFDVPVGKTGDCYDRYLVRVEEMRQANRIIQQCSA 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ P R MK +ME LIHHFKL+TEG+HVP GE YAAVE PKG
Sbjct: 302 WL--RANPGPVITGNHKVAAPARESMKANMEELIHHFKLFTEGFHVPEGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YL+SDG NKPYR KIRAPG+ HL A++ + +GH +AD A++G++DIVFGE+DR
Sbjct: 360 EFGIYLVSDGANKPYRLKIRAPGFPHLAALDEMSRGHMIADAVAVIGTMDIVFGEIDR 417
>gi|17568379|ref|NP_510569.1| General Anaesthetic Sensitivity abnormal family member (gas-1)
[Caenorhabditis elegans]
gi|3183092|sp|Q93873|NDUS2_CAEEL RecName: Full=Probable NADH dehydrogenase [ubiquinone] iron-sulfur
protein 2, mitochondrial; AltName: Full=Complex I-49kD;
Short=CI-49kD; AltName: Full=NADH-ubiquinone
oxidoreductase 49 kDa subunit; Flags: Precursor
gi|3878424|emb|CAB01886.1| C. elegans protein K09A9.5, confirmed by transcript evidence
[Caenorhabditis elegans]
Length = 482
Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats.
Identities = 229/394 (58%), Positives = 299/394 (75%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+K + +NFGPQHPAAHGVLRL+L+L+GE++ + PHIGLLHR TEKLIE KT+ QA+
Sbjct: 93 EKNLENMILNFGPQHPAAHGVLRLVLKLEGEVIIKAIPHIGLLHRATEKLIEHKTYTQAL 152
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E A++LAVEKLLGI+IP R + IR L E+ RI +H++ +TT A+D
Sbjct: 153 PYFDRLDYVSMMCNEQAWSLAVEKLLGIDIPTRAKYIRTLMGELTRIQNHIMGITTHALD 212
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP W FEEREKL F ER SG+RMHA Y RPGGV D+P L++DI W FP
Sbjct: 213 VGAMTPFFWMFEEREKLFEFSERVSGARMHANYVRPGGVAWDLPIGLMDDIYDWAIKFPE 272
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++++ D+LT NRI+K R ++IG V DA WGFSGVM+RGSG D+RK++PY+ Y++
Sbjct: 273 RIDELEDMLTENRIWKARTIDIGLVSAADALNWGFSGVMVRGSGIKQDVRKTEPYDAYAD 332
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++FD+PIG GDCYDRYL R+ EMR+S+ I+ QC+N++ G + D K+VPPKRA
Sbjct: 333 MEFDVPIGTKGDCYDRYLCRIEEMRQSLNIVHQCLNKMPA----GEIKVDDHKVVPPKRA 388
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK +MESLIHHFK +TEG+ VP G Y +EAPKGEFGVYL++DG KPYRC IRAPG+
Sbjct: 389 EMKENMESLIHHFKFFTEGFQVPPGATYVPIEAPKGEFGVYLVADGTGKPYRCFIRAPGF 448
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL A+ +C +AD+ A++G++DIVFGEVDR
Sbjct: 449 AHLAAIHDVCYMSLIADIVAVIGTMDIVFGEVDR 482
>gi|152979920|ref|YP_001353155.1| NADH dehydrogenase subunit D [Janthinobacterium sp. Marseille]
gi|229891400|sp|A6SY08|NUOD_JANMA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|151279997|gb|ABR88407.1| NADH dehydrogenase I chain D [Janthinobacterium sp. Marseille]
Length = 417
Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats.
Identities = 239/418 (57%), Positives = 302/418 (72%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E KT+LQ+VP
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTYLQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY +A+EK+L IE+P+R Q IRV++ EI RIL+HL+ + A+DV
Sbjct: 62 YMDRLDYVSMMCNEHAYVMAIEKMLNIEVPLRAQYIRVMFDEITRILNHLMWLGAHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMGVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDTMPQHKASIIRNAKAI 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + + FP+ +++ LLT NRI+KQR V IG V E A GF+
Sbjct: 182 SQLNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGIGVVSPERAMAMGFT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG WDLRK QPYE Y +DFDIP+G +GDCYDRYLVR+ EMR+S +II+QCV
Sbjct: 242 GAMLRGSGVEWDLRKKQPYEVYDLMDFDIPVGTNGDCYDRYLVRVEEMRQSNRIIKQCVE 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L +N GPV + K+ PP R MK +ME LIHHFKL+TEG+HVP GE YAAVE PKG
Sbjct: 302 WL--RNNAGPVMTDNHKVAPPSRVGMKSNMEDLIHHFKLFTEGFHVPTGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFGVYLISDG NKPYR KIRAPG+ HLQ ++ + KGH +AD I+G+ DIVFGE+DR
Sbjct: 360 EFGVYLISDGANKPYRMKIRAPGFPHLQGLDEMAKGHMIADAVTIIGTQDIVFGEIDR 417
>gi|299066336|emb|CBJ37520.1| NADH-ubiquinone oxidoreductase subunit D [Ralstonia solanacearum
CMR15]
Length = 417
Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats.
Identities = 233/418 (55%), Positives = 299/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E KT++Q VP
Sbjct: 2 ADIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTWIQNVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY +A+E+LLGI++P+R Q IRV++ EI RI++HL+ + A+DV
Sbjct: 62 YMDRLDYVSMMVNEHAYVMAIERLLGIDVPLRAQYIRVMFDEITRIMNHLMWIGAHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE L YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMAVFLYAFREREDLFDMYEAVSGARMHAAYYRPGGVYRDLPDSMPQYKASKVRNEKAL 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + D FP+ +++ LLT NRI+KQR V IG V E A G +
Sbjct: 182 AVMNETRSGSLLDFIEAFTDRFPTYVDEYETLLTDNRIWKQRLVGIGVVTPERALQKGMT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG AWD+RK QPYE Y +DFDIP+G +GDCYDRYLVR+ EMR+S +I+RQCV
Sbjct: 242 GPMLRGSGIAWDVRKKQPYEVYDRVDFDIPVGVNGDCYDRYLVRVEEMRQSNRIVRQCVE 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ PP R +MK +ME LIHHFKL+TEG HVP GE YAAVE PKG
Sbjct: 302 WL--RKNPGPVITDNHKVAPPSRVEMKTNMEELIHHFKLFTEGMHVPEGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+Y+ISDG NKPYR KIRAPG+ HL A++ + KGH +AD I+G+ DIVFGE+DR
Sbjct: 360 EFGIYVISDGANKPYRLKIRAPGFVHLAALDEMAKGHMIADAVTIIGTQDIVFGEIDR 417
>gi|11465869|ref|NP_066418.1| NADH dehydrogenase subunit 7 [Ochromonas danica]
gi|10505202|gb|AAG18384.1|AF287134_9 NADH dehydrogenase subunit 7 [Ochromonas danica]
Length = 398
Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats.
Identities = 244/392 (62%), Positives = 312/392 (79%), Gaps = 4/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ ++FTINFGPQHPAAHGVLRLILELDGE+VE+ DPHIGLLHRGTEKLIE KT+LQA+PY
Sbjct: 11 ELKNFTINFGPQHPAAHGVLRLILELDGEVVEKADPHIGLLHRGTEKLIEFKTYLQALPY 70
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
FDRLDYV+ M QEH Y+LA+EK+ I IP R ++IR +++EI R+L+HLL V AMDVG
Sbjct: 71 FDRLDYVSMMAQEHTYSLAIEKIGNIVIPERAKIIRTIFAEITRLLNHLLAVGCHAMDVG 130
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A+TP LW FEEREKLM FYER SG+RMHAAY RPGGV DIP L++D+ + + F L
Sbjct: 131 AMTPFLWAFEEREKLMEFYERVSGARMHAAYIRPGGVSMDIPLGLLDDLYIFVNQFNYRL 190
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+++ ++LT +RI+K+R V+IG V A WGFSGVM+RGSG +WDLRK+QPYE YSE+D
Sbjct: 191 DEMEEMLTKSRIWKERLVDIGVVSAAKAIEWGFSGVMLRGSGISWDLRKNQPYEIYSEID 250
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F IP+G GDCYDRYLVR+ EMR+S+ II +C+ ++ K GP+ +++ KI PP R +M
Sbjct: 251 FSIPVGNSGDCYDRYLVRVEEMRQSIYIISKCLTKI----KEGPIKSNNYKISPPSRLEM 306
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K SME++IHHFK ++EG+ +P GE Y + EAPKGEFGVYL+S+ KPYRCKI+APG+ H
Sbjct: 307 KNSMEAVIHHFKYFSEGFVLPCGETYTSTEAPKGEFGVYLVSNNTEKPYRCKIKAPGFGH 366
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
LQA+ + KGH +ADV I+G+ DIVFGE+DR
Sbjct: 367 LQALNDMSKGHLIADVVTIIGTQDIVFGEIDR 398
>gi|254491826|ref|ZP_05105005.1| NADH dehydrogenase (quinone), D subunit [Methylophaga thiooxidans
DMS010]
gi|224463304|gb|EEF79574.1| NADH dehydrogenase (quinone), D subunit [Methylophaga thiooxydans
DMS010]
Length = 417
Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats.
Identities = 239/418 (57%), Positives = 304/418 (72%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRLILE+DGE++ER DPHIGLLHRGTEKL E+K F Q++
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLILEMDGEVIERADPHIGLLHRGTEKLAESKPFNQSIG 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY +A+EKL+G+E+PIR Q IRV++ EI R+L+HL+ + +D+
Sbjct: 62 YMDRLDYVSMMCNEHAYVMAIEKLIGLEVPIRAQYIRVMFDEITRVLNHLMWLGAHGLDI 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+T L+ F ERE LM YE SG+RMHA Y+RPGGV++D+P +
Sbjct: 122 GAMTVFLYCFREREDLMDCYEAVSGARMHATYYRPGGVYRDLPARMPQYQTSKWHNEKEV 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP +++ LLT NRI+KQR V IG V E A GF+
Sbjct: 182 KKKNSNREGSLLDFIEDFTTRFPKCVDEYETLLTDNRIWKQRTVGIGVVSPERAMQLGFT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG WDLR+ QPYE Y +LDFDIPIGK GDCYDRYLVR+ EMR+S +II+QCV+
Sbjct: 242 GPMLRGSGIEWDLRRKQPYEVYDKLDFDIPIGKEGDCYDRYLVRVEEMRQSNRIIKQCVD 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ PPKRA MK ME+LIHHFKL+TEGY VP GEVY+A+E PKG
Sbjct: 302 WL--RANPGPVILDNSKVAPPKRAVMKDDMEALIHHFKLFTEGYCVPEGEVYSAIEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+Y++SDG NKPYR KIRAPG+ HL AM + KGH LADV AI+G++DIVFGE+DR
Sbjct: 360 EFGIYMVSDGANKPYRVKIRAPGFPHLAAMNEMSKGHMLADVVAIIGTMDIVFGEIDR 417
>gi|254419243|ref|ZP_05032967.1| NADH dehydrogenase (quinone), D subunit [Brevundimonas sp. BAL3]
gi|196185420|gb|EDX80396.1| NADH dehydrogenase (quinone), D subunit [Brevundimonas sp. BAL3]
Length = 414
Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats.
Identities = 295/392 (75%), Positives = 337/392 (85%), Gaps = 1/392 (0%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
R FTINFGPQHPAAHGVLRL+LELDGEIVERVDPHIGLLHRGTEKL+E +T+LQ VPY
Sbjct: 24 DDRKFTINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLMEARTYLQNVPY 83
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDYVAPMNQEHA+ LA+EKLLG+E+P R QLIRVLYSEIGRI +HLLN T QAMDVG
Sbjct: 84 LDRLDYVAPMNQEHAFCLAIEKLLGVEVPYRAQLIRVLYSEIGRIGNHLLNATMQAMDVG 143
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
ALTPPLWG EEREKLMVFYERASG+R+HA YFRPGGVHQD+P +L++DIG WC FP AL
Sbjct: 144 ALTPPLWGHEEREKLMVFYERASGARLHANYFRPGGVHQDLPMDLIDDIGRWCHEFPKAL 203
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
DI L+T NRIFKQRNV+IG V E A WGF+GVM+RGS AWDLRKSQPYECY+EL+
Sbjct: 204 TDIESLVTENRIFKQRNVDIGVVSKEQALAWGFTGVMLRGSDIAWDLRKSQPYECYAELE 263
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDIP+GK+GDC+DRYL R+ EM++SV+I+ QC+++L PV D KIVPP+R +M
Sbjct: 264 FDIPVGKNGDCWDRYLCRIEEMKQSVRIMEQCIHKLRNCPGE-PVMLEDNKIVPPRRGEM 322
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
KRSMESLIHHFKLYTEG+ P GEVYA+VEAPKGEFG+YL+SDG NKPYR KI APG+ H
Sbjct: 323 KRSMESLIHHFKLYTEGFKTPEGEVYASVEAPKGEFGIYLVSDGTNKPYRVKISAPGFRH 382
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
LQAM+++ GHQLADVSAILGSLDIVFGEVDR
Sbjct: 383 LQAMDWINSGHQLADVSAILGSLDIVFGEVDR 414
>gi|313672280|ref|YP_004050391.1| NADH dehydrogenase subunit d [Calditerrivibrio nitroreducens DSM
19672]
gi|312939036|gb|ADR18228.1| NADH dehydrogenase subunit D [Calditerrivibrio nitroreducens DSM
19672]
Length = 397
Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats.
Identities = 178/391 (45%), Positives = 258/391 (65%), Gaps = 4/391 (1%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
S T+N GPQHP+ HGVLRL+++LDGE + V P IG LHRG EKL E +T+ Q +P
Sbjct: 11 SEIITVNMGPQHPSTHGVLRLVVDLDGETIVGVRPDIGFLHRGVEKLAEHRTYHQFIPLT 70
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DRLDY++P++ AY LAVEK ++IP R + +RV+++E+ RI SHL+ V T A+D+GA
Sbjct: 71 DRLDYLSPLSNNLAYCLAVEKFFNVKIPERAEYLRVIFAELARIASHLVWVATHALDIGA 130
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+T L+ F ERE ++ +E A+G RM +++ R GG+ +D+P E + + F ++
Sbjct: 131 MTVFLYAFRERELILDMFEIATGQRMTSSWIRVGGIREDVPALFFEKLREFVSIFDERVD 190
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
LLT NRI+ +R V +G + EDA +G SG ++RGSG +DLR+ +PY Y F
Sbjct: 191 TYEKLLTKNRIWLKRTVGVGVLSKEDAIDYGVSGPIMRGSGVDFDLRRDEPYGIYDRFKF 250
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
++ + D Y RYLVR+ EMRE+ KI++Q ++++ GPV DP+I P ++
Sbjct: 251 EVAVQDGCDIYARYLVRIKEMREANKILQQALDQI----PEGPVMTDDPRIQIPPHEEVY 306
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
ME+LI F + T+G+ P GE YA VEAPKGE G Y++SDG KPYR KIRAP + +L
Sbjct: 307 EKMEALIRRFYIITKGFAAPKGEAYACVEAPKGELGFYIVSDGDTKPYRLKIRAPSFVNL 366
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A+E + KG+ +AD+ I+GS+DIV GE+DR
Sbjct: 367 GALEKMAKGYMVADLVGIIGSIDIVLGEIDR 397
>gi|126727145|ref|ZP_01742982.1| NADH dehydrogenase delta subunit [Rhodobacterales bacterium
HTCC2150]
gi|126703573|gb|EBA02669.1| NADH dehydrogenase delta subunit [Rhodobacterales bacterium
HTCC2150]
Length = 404
Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats.
Identities = 288/394 (73%), Positives = 337/394 (85%), Gaps = 3/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++K R+F INFGPQHPAAHGVLRL+LELDGEIVER DPHIGLLHRGTEKL+E++T+LQ +
Sbjct: 14 EQKIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNL 73
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYVAPMNQEHA+ LA+EKL G+E+P R LIRVLYSEIGR+L+H+LNVTTQAMD
Sbjct: 74 PYFDRLDYVAPMNQEHAWCLAIEKLTGVEVPRRASLIRVLYSEIGRVLNHILNVTTQAMD 133
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTPPLWGFEEREKLMVFYERASG+R+HAAYFRPGGVHQD+P +L++DI W D FP+
Sbjct: 134 VGALTPPLWGFEEREKLMVFYERASGARLHAAYFRPGGVHQDLPDDLIDDIDTWADEFPA 193
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L DI LLT NRIFKQRNV+IG + ++A WGFSGVM+RGSG AWDLR+SQPYECY E
Sbjct: 194 VLADIDGLLTDNRIFKQRNVDIGVISQQEALDWGFSGVMVRGSGMAWDLRRSQPYECYDE 253
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DFDIP+G GDCYDRYL RM EMRES+KII+Q V +L + + KI PP R
Sbjct: 254 FDFDIPVGTSGDCYDRYLCRMQEMRESLKIIKQAVAKLRVEKGDV---LARGKITPPSRG 310
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
DMK SMESLIHHFKLYTEG+HVP GE+YA VEAPKGEFGV+L+SDG NKPY+ KIRAPG+
Sbjct: 311 DMKTSMESLIHHFKLYTEGFHVPAGEIYACVEAPKGEFGVFLVSDGSNKPYKAKIRAPGF 370
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQAM+ + GHQLADV+AI+G++D+VFGE+DR
Sbjct: 371 LHLQAMDHVATGHQLADVAAIIGTMDVVFGEIDR 404
>gi|312796899|ref|YP_004029821.1| NADH-quinone oxidoreductase chain D [Burkholderia rhizoxinica HKI
454]
gi|312168674|emb|CBW75677.1| NADH-quinone oxidoreductase chain D (EC 1.6.5.3) [Burkholderia
rhizoxinica HKI 454]
Length = 417
Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats.
Identities = 238/418 (56%), Positives = 299/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E KTFLQ+VP
Sbjct: 2 ADIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEHKTFLQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY +A+EKL+GI++P+R Q IRV++ EI RIL+HL+ + A+DV
Sbjct: 62 YMDRLDYVSMMANEHAYVMAIEKLVGIDVPLRAQYIRVMFDEITRILNHLMWIGAHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP---------------- 167
GA+ L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P
Sbjct: 122 GAMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDVMPQYKASKIRNEKAL 181
Query: 168 ---------ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
L++ I + + FP +++ LLT NRI+KQR V IG V E A G +
Sbjct: 182 ARLNENRQGSLLDFIEDFTNRFPGCVDEYETLLTDNRIWKQRLVGIGVVTPERALQLGMT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG WDLRK QPYE Y +LDFDIP+G GDCYDRYLVR+ EMR+S +II+QC+
Sbjct: 242 GPMLRGSGVEWDLRKKQPYEVYDQLDFDIPVGAGGDCYDRYLVRIEEMRQSNRIIKQCIA 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ PP R +MK +ME LIHHFKL+TEG HVP GE Y AVE PKG
Sbjct: 302 WL--RKNPGPVMVDNYKVAPPSRLNMKSNMEELIHHFKLFTEGMHVPEGEAYVAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YL+SDG NKPYR KIRAPGYAHL A++ + +GH +AD I+G+ DIVFGEVDR
Sbjct: 360 EFGIYLVSDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEVDR 417
>gi|10802908|gb|AAG23656.1|AF288091_1 NADH dehydrogenase subunit 7 [Thraustochytrium aureum]
Length = 397
Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats.
Identities = 244/393 (62%), Positives = 310/393 (78%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K+ ++FT+NFGPQHPAAHGVLRL+LELDGE+V + DPH+GLLHRGTEKL+E KT+LQA+P
Sbjct: 9 KEIQAFTLNFGPQHPAAHGVLRLVLELDGEVVRKADPHVGLLHRGTEKLVEQKTYLQALP 68
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ + QEH Y++ VE LL + IP+R Q IRV++ EI RIL+HLL V+ A+DV
Sbjct: 69 YFDRLDYVSIIAQEHTYSIGVETLLDLSIPLRSQFIRVIFLEITRILNHLLAVSCHALDV 128
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+TP WGFEEREKL+ FYER SG+RMHAAY RPGGV DIP L+ DI +C+SF
Sbjct: 129 GAITPFFWGFEEREKLIEFYERVSGARMHAAYVRPGGVSFDIPKGLLNDIFYFCESFKVR 188
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L++ +LLT NRI+KQR VNIG V D+ WGFSGVM+RGSG WDLR++ PYE Y++L
Sbjct: 189 LDEFEELLTNNRIWKQRLVNIGVVSAADSKNWGFSGVMLRGSGIPWDLRQNFPYEVYNQL 248
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
F+IP+G +GDCYDRYL+R+ E+R+S+ II Q +N + GPV + + K P +
Sbjct: 249 SFEIPVGSNGDCYDRYLIRIEEIRQSISIIVQAINLM----PEGPVKSFNYKFSNPSKKM 304
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK S+E+LIHHFK +TEG+ V GEVY A EAPKGEFGV+L+SDG NKPYRCKI+APG++
Sbjct: 305 MKNSIEALIHHFKYFTEGFPVNRGEVYVATEAPKGEFGVFLVSDGSNKPYRCKIKAPGFS 364
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ ++F+ KGH +ADV I+G+ DIVFGEVDR
Sbjct: 365 HLQGLDFMSKGHLIADVVTIIGTQDIVFGEVDR 397
>gi|220934165|ref|YP_002513064.1| NADH dehydrogenase I, D subunit [Thioalkalivibrio sp. HL-EbGR7]
gi|219995475|gb|ACL72077.1| NADH dehydrogenase I, D subunit [Thioalkalivibrio sp. HL-EbGR7]
Length = 417
Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats.
Identities = 236/417 (56%), Positives = 298/417 (71%), Gaps = 27/417 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ R++T+NFGPQHP+AHGVLRL+LELDGE+V+R DPHIGLLHRGTEKL E+K + Q++ Y
Sbjct: 3 EIRNYTLNFGPQHPSAHGVLRLVLELDGEVVQRADPHIGLLHRGTEKLAESKPYNQSIGY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDYV+ M EH Y LA+EKLLG++ PIR Q IRV++ EI RIL+HLL + A+D+G
Sbjct: 63 MDRLDYVSMMCNEHGYVLAMEKLLGVQAPIRAQYIRVMFDEITRILNHLLWLGAHALDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIP------------------ 166
A+T L+ F ERE LM YE SG+R+HA Y+RPGGV +D+P
Sbjct: 123 AMTVFLYAFREREDLMDCYEAVSGARLHATYYRPGGVARDLPGSMPQYQASRFKSQKEVD 182
Query: 167 -------PELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
+++ I + + FP +++ LLT NRI+KQR V +G V E A GF+G
Sbjct: 183 ALNQVRQGSMLDFIEAFTERFPGCVDEYETLLTDNRIWKQRTVGVGVVSPERAMQMGFTG 242
Query: 220 VMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR 279
M+RGSG WDLR+ QPYE Y LDF IP+G +GDCYDRYLVR+ EMR+S +IIRQCV+
Sbjct: 243 PMLRGSGIEWDLRRKQPYEVYDRLDFQIPVGVNGDCYDRYLVRIEEMRQSNRIIRQCVDW 302
Query: 280 LLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGE 339
L + GPV D KI PP+R +MK MESLIHHFKL+TEG+ +P GE YAAVE PKGE
Sbjct: 303 L--RKNPGPVMLEDHKIAPPRREEMKADMESLIHHFKLFTEGFCLPEGEAYAAVEHPKGE 360
Query: 340 FGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
FGVYL+SDG NKPYR K+RAPG+AHL + + GH LADV AI+G+ DIVFGE+DR
Sbjct: 361 FGVYLVSDGANKPYRLKVRAPGFAHLAGLNEMATGHMLADVVAIIGTQDIVFGEIDR 417
>gi|114327963|ref|YP_745120.1| NADH dehydrogenase subunit D [Granulibacter bethesdensis CGDNIH1]
gi|122327075|sp|Q0BSK5|NUOD_GRABC RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|114316137|gb|ABI62197.1| NADH-quinone oxidoreductase chain D [Granulibacter bethesdensis
CGDNIH1]
Length = 400
Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats.
Identities = 253/392 (64%), Positives = 314/392 (80%), Gaps = 4/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ S INFGPQHPAAHGVLRL+LELDGE+VER DPHIGLLHRGTEKLIE K++LQA+PY
Sbjct: 13 EIDSHAINFGPQHPAAHGVLRLVLELDGEVVERADPHIGLLHRGTEKLIEYKSYLQALPY 72
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
FDRLDYV+PM +EHA+ALA EKLLGI P R Q IR +++EI RIL+HLLN+TT A+D G
Sbjct: 73 FDRLDYVSPMCEEHAFALATEKLLGITAPERAQWIRTMFAEITRILNHLLNLTTYALDGG 132
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A+TP LWG EEREKL+ F+E SG+R HA YFRPGGV +D+P L + I W + FP+ +
Sbjct: 133 AMTPVLWGHEEREKLLEFHEAVSGARFHANYFRPGGVAKDLPAGLTDRIADWTEKFPAFI 192
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+D++ LL+ NRI+KQR V+IG + E A WGFSG IR SG WDLRKSQPY+ Y+++D
Sbjct: 193 DDMAGLLSDNRIWKQRVVDIGRMTPEQALAWGFSGPCIRASGIPWDLRKSQPYDKYADVD 252
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F++P+G++GDCYDRYLVR+ EMR+SV+I++QC+ ++ GP+ D KI PP RA+M
Sbjct: 253 FEVPVGRNGDCYDRYLVRVEEMRQSVRIVKQCLGKIR----PGPIKVQDHKITPPPRAEM 308
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
KRSME+LIHHFKLYTEGYHVP G Y AVE+PKGEFGVYL+SDG N+PYRCKIR G+AH
Sbjct: 309 KRSMEALIHHFKLYTEGYHVPEGATYTAVESPKGEFGVYLVSDGSNRPYRCKIRPTGFAH 368
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
LQA++ + H LAD I+GSLD+VFGEVDR
Sbjct: 369 LQAIDVMAHRHMLADAVVIIGSLDLVFGEVDR 400
>gi|293603922|ref|ZP_06686337.1| NADH-quinone oxidoreductase subunit D [Achromobacter piechaudii
ATCC 43553]
gi|292817759|gb|EFF76825.1| NADH-quinone oxidoreductase subunit D [Achromobacter piechaudii
ATCC 43553]
Length = 418
Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats.
Identities = 239/419 (57%), Positives = 308/419 (73%), Gaps = 28/419 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E KT++QA+P
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEHKTYIQALP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY +A+EKLLG+E P+R Q IRV++ EI R+L+HL+++ + A+DV
Sbjct: 62 YMDRLDYVSMMCNEHAYVMAIEKLLGVEAPLRAQYIRVMFDEITRLLNHLMSLGSHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMAVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDTMPQYGDTSKYRGDKE 181
Query: 170 ------------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF 217
++ I + + FP+ +++ LLT NRI+KQR V IG V + A GF
Sbjct: 182 MRIMNDARSGSLLDFIEDFTNRFPACVDEYETLLTDNRIWKQRLVGIGVVDPDRAKALGF 241
Query: 218 SGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCV 277
+G M+RGSG AWDLRK+QPYE Y LDFDIP+G +GDCYDRYLVR+ EMRES +IIRQCV
Sbjct: 242 TGPMLRGSGVAWDLRKTQPYEVYDLLDFDIPVGVNGDCYDRYLVRIAEMRESNRIIRQCV 301
Query: 278 NRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPK 337
L +N GPV + KI PPKR MK +ME LIHHFKL+TEG+HVP GE YA+VE PK
Sbjct: 302 EWL--RNNPGPVMIENHKIAPPKRTAMKTNMEELIHHFKLFTEGFHVPPGEAYASVEHPK 359
Query: 338 GEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GEFG+YL+SDG NKPYR KIRAPG+ HLQ+++ + +GH +AD I+G+ DIVFGE+DR
Sbjct: 360 GEFGIYLVSDGANKPYRLKIRAPGFVHLQSLDEMSRGHMIADAVTIIGTQDIVFGEIDR 418
>gi|238023162|ref|ZP_04603588.1| hypothetical protein GCWU000324_03088 [Kingella oralis ATCC 51147]
gi|237865545|gb|EEP66685.1| hypothetical protein GCWU000324_03088 [Kingella oralis ATCC 51147]
Length = 418
Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats.
Identities = 246/418 (58%), Positives = 306/418 (73%), Gaps = 26/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K R++TINFGPQHPAAHGVLR+ILEL+GE + R DPHIGLLHRGTEKL ETKT+LQA+P
Sbjct: 2 AKLRNYTINFGPQHPAAHGVLRMILELEGETIVRADPHIGLLHRGTEKLAETKTYLQALP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M E AY LA+EKLLGIE+PIR + IR +++E+ RIL+HL+ V + A+D+
Sbjct: 62 YMDRLDYVSMMCNEQAYCLAIEKLLGIEVPIRAKYIRTMFAEVTRILNHLMGVGSHALDI 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP---------------- 167
GA+T L+ F +RE+LM YE SG+RMHAAYFR GGV++D+P
Sbjct: 122 GAMTAILYAFRDREELMDLYEAVSGARMHAAYFRVGGVYRDLPDFMPKYEASKYRSAKVL 181
Query: 168 ---------ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
+++ I +C+ FP ++ + LLT NRI+KQR V IG V E A GF+
Sbjct: 182 KELNASREGSMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERALQKGFT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
GVM+RGSG WD+RK QPYE Y E+DFDIP+G +GDCYDRYL RM EMR+SV+II+QC +
Sbjct: 242 GVMLRGSGVEWDVRKKQPYEMYHEMDFDIPVGVNGDCYDRYLCRMAEMRQSVRIIKQCAD 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + PV + K+ PPKR +MK ME LIHHFKL+TEG HVP GE Y A+E PKG
Sbjct: 302 WLRANPNL-PVITDNHKVAPPKRTEMKMGMEDLIHHFKLFTEGMHVPEGETYTAIEHPKG 360
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFGVY+ISDG NKPYR KIRAPG+AHLQ M+ + +GH LADV AI+G+ DIVFGEVDR
Sbjct: 361 EFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMARGHMLADVVAIIGTQDIVFGEVDR 418
>gi|294788080|ref|ZP_06753324.1| NADH dehydrogenase (quinone), D subunit [Simonsiella muelleri ATCC
29453]
gi|294484373|gb|EFG32056.1| NADH dehydrogenase (quinone), D subunit [Simonsiella muelleri ATCC
29453]
Length = 418
Score = 438 bits (1128), Expect = e-121, Method: Composition-based stats.
Identities = 245/418 (58%), Positives = 307/418 (73%), Gaps = 26/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K R++TINFGPQHPAAHGVLR+ILEL+GE + R DPHIGLLHRGTEKL ETKT+LQA+P
Sbjct: 2 AKLRNYTINFGPQHPAAHGVLRMILELEGETIVRADPHIGLLHRGTEKLAETKTYLQALP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M E AY +A+EKL+GIE+PIR + IR +++E+ RIL+HL+ V + A+D+
Sbjct: 62 YMDRLDYVSMMVNEQAYCMAIEKLVGIEVPIRAKYIRTMFAEVTRILNHLMGVGSHALDI 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP---------------- 167
GA+T L+ F +RE+LM YE SG+RMHAAYFRPGGV++D+P
Sbjct: 122 GAMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKYRNAKVL 181
Query: 168 ---------ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
+++ I +C+ FP ++ + LLT NRI+KQR V IG V E A GF+
Sbjct: 182 KELNASREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERALQKGFT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
GVM+RGSG WD+RK QPYE Y ++DFDIP+G +GDCYDRYL RM EMR+SV+II+QC +
Sbjct: 242 GVMLRGSGVEWDIRKKQPYEVYDQIDFDIPVGVNGDCYDRYLCRMAEMRQSVRIIKQCAD 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + PV + K+ PPKR DMK ME LIHHFKL+TEG HVP GE Y AVE PKG
Sbjct: 302 WLRANPNL-PVIVENHKVAPPKRTDMKIGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKG 360
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+Y+ISDG NKPYR KIRAPG+AHLQ M+ + +GH LADV AI+G+ DIVFGEVDR
Sbjct: 361 EFGIYMISDGANKPYRLKIRAPGFAHLQGMDEMARGHMLADVVAIIGTQDIVFGEVDR 418
>gi|258593432|emb|CBE69771.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
(NDH-1, chain D) [NC10 bacterium 'Dutch sediment']
Length = 390
Score = 438 bits (1128), Expect = e-121, Method: Composition-based stats.
Identities = 195/393 (49%), Positives = 270/393 (68%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ R+ TIN GPQHP+ HGVLRL+LELDGEI+ R PHIG LH G EK+ E+K + Q +P
Sbjct: 2 TERRTMTINMGPQHPSTHGVLRLVLELDGEIIVRCTPHIGYLHTGMEKIAESKRYQQVIP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+DY+AP++ AY LAVEKLLG+E R Q+IRV+ +E+ RI SHL+ + T A+D+
Sbjct: 62 ITDRMDYLAPLSNNLAYVLAVEKLLGVEASPRAQVIRVMLTELTRIASHLVWLATHAIDI 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA++ L+ F ERE ++ YE+ SG+RM ++YFR GG+ D+P + + + SFP
Sbjct: 122 GAMSVFLYAFREREAILDMYEQVSGARMMSSYFRVGGLFADLPEGFEKTVQAFVTSFPDR 181
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L + DLLT N I+ +R +G +K EDA G SG +R G AWD+RKS PY Y
Sbjct: 182 LAEYEDLLTQNPIWLERTRGVGVIKPEDAVDLGLSGPSLRACGIAWDIRKSNPYSGYERF 241
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
F++ G HGD YDRYL R+ EM++SV I+ Q + GPV +DPK++PP +
Sbjct: 242 HFEMSRGTHGDVYDRYLCRIFEMQQSVAIVHQALE----CLPDGPVVIADPKLIPPPKPM 297
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+K+SME+LIHHF L++ G+ VP GEVY +VE+P+GE+GVYL+SDG NKPYR R P +
Sbjct: 298 VKQSMEALIHHFLLWSSGFTVPAGEVYQSVESPRGEYGVYLVSDGSNKPYRVHFRTPSFV 357
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ++ + +G +AD+ AI+GS+DIV GEVDR
Sbjct: 358 NLQSLPRMAEGRLVADLVAIIGSIDIVLGEVDR 390
>gi|163855990|ref|YP_001630288.1| NADH dehydrogenase subunit D [Bordetella petrii DSM 12804]
gi|229891268|sp|A9II07|NUOD_BORPD RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|163259718|emb|CAP42019.1| NADH dehydrogenase I, chain D [Bordetella petrii]
Length = 418
Score = 438 bits (1128), Expect = e-121, Method: Composition-based stats.
Identities = 237/419 (56%), Positives = 308/419 (73%), Gaps = 28/419 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E KT++QA+P
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEHKTYIQALP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY +A+EKLLGIE P+R Q IRV++ EI R+L+HL+++ + A+DV
Sbjct: 62 YMDRLDYVSMMCNEHAYVMAIEKLLGIEPPLRAQYIRVMFDEITRLLNHLMSLGSHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMAVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDTMPQYGESSKYRGEKD 181
Query: 170 ------------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF 217
++ I + + FP+ +++ LLT NRI+KQR V IG V E A GF
Sbjct: 182 LRIMNDARSGSLLDFIEDFTNRFPACVDEYETLLTDNRIWKQRLVGIGVVDPERAKALGF 241
Query: 218 SGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCV 277
+G M+RGSG AWDLRK QPYE Y +DFD+P+G +GDCYDRYLVR+ EMRES +IIRQCV
Sbjct: 242 TGPMLRGSGVAWDLRKMQPYEVYDLVDFDVPVGVNGDCYDRYLVRIAEMRESNRIIRQCV 301
Query: 278 NRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPK 337
L +N GPV + K+ PPKR MK +ME LIHHFKL+TEG+HVP GE +A++E PK
Sbjct: 302 EWL--RNNPGPVMVENHKVAPPKRTGMKTNMEDLIHHFKLFTEGFHVPPGEAFASIEHPK 359
Query: 338 GEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GEFG+YL+SDG NKPYR KIRAPG+AHLQ+++ + +GH +AD I+G+ DIVFGE+DR
Sbjct: 360 GEFGIYLVSDGANKPYRLKIRAPGFAHLQSLDEMARGHMIADAVTIIGTQDIVFGEIDR 418
>gi|134095028|ref|YP_001100103.1| NADH dehydrogenase subunit D [Herminiimonas arsenicoxydans]
gi|229891399|sp|A4G641|NUOD_HERAR RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|133738931|emb|CAL61978.1| NADH-ubiquinone oxidoreductase D subunit (NADH dehydrogenase
subunit D) [Herminiimonas arsenicoxydans]
Length = 417
Score = 438 bits (1128), Expect = e-121, Method: Composition-based stats.
Identities = 238/418 (56%), Positives = 303/418 (72%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E KT+LQ+VP
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTYLQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY +++EK+L +E+P+R Q IRV++ EI RIL+HL+ + A+DV
Sbjct: 62 YMDRLDYVSMMCNEHAYVMSIEKMLNLEVPLRAQYIRVMFDEITRILNHLMWLGAHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMGVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDAMPQHKASIIRNAKAI 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + + FP+ +++ LLT NRI+KQR V +G V E A GF+
Sbjct: 182 NKLNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGVGVVSPERAMAMGFT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG WDLRK QPYE Y LDFDIP+G +GDCYDRYLVR+ EMR+S +II+QCV
Sbjct: 242 GPMLRGSGIEWDLRKKQPYEVYDLLDFDIPVGTNGDCYDRYLVRVEEMRQSNRIIKQCVE 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L +N G V + K+ PP R DMK +ME LIHHFKL+TEG+HVPVGE YAAVE PKG
Sbjct: 302 WL--RNNPGSVMTDNHKVAPPSRVDMKSNMEDLIHHFKLFTEGFHVPVGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFGVYLISDG NKPYR KIRAPG+ HLQ ++ + KGH +AD I+G+ DIVFGE+DR
Sbjct: 360 EFGVYLISDGANKPYRMKIRAPGFPHLQGLDEMAKGHMIADAVTIIGTQDIVFGEIDR 417
>gi|206602057|gb|EDZ38539.1| NADH dehydrogenase (ubiquinone), D subunit [Leptospirillum sp.
Group II '5-way CG']
Length = 423
Score = 438 bits (1128), Expect = e-121, Method: Composition-based stats.
Identities = 175/392 (44%), Positives = 263/392 (67%), Gaps = 4/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ F +N GPQHP+ HGVLR++LELDGE ++R P +G LHRGTEK+ E +T+ Q +P
Sbjct: 36 QTDQFLLNMGPQHPSTHGVLRVLLELDGERIKRSVPDLGYLHRGTEKIAEYRTYNQIIPL 95
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDYV+ M +A+ VEKLL +++P R + +R + +E+ RI++HL + TQA+D+G
Sbjct: 96 TDRLDYVSAMANNYAFVRTVEKLLQLKVPERAEFVRTIVAEVQRIVNHLFWLGTQALDIG 155
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++ + F ERE L+ +E G+R+ Y+R GGV DIP +++ + + ++F +
Sbjct: 156 AMSVFFYTFREREVLLDIFEILCGARLTTNYYRVGGVESDIPQHVIDRLYKFVETFEGHI 215
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ + LL NRI+ R NI + EDA +G SG +RGSG +DLRK +PY Y +++
Sbjct: 216 QEYNTLLETNRIWLARTKNIAVITGEDAINFGLSGPTLRGSGVPYDLRKFEPYGAYDQVE 275
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FD+P+G++GD YDRY +R+ EMR+S KIIRQC+++L GP+ D K+ P++ ++
Sbjct: 276 FDVPVGQNGDIYDRYWIRIEEMRQSAKIIRQCLDKLPN----GPIMTDDHKVSFPEKGNV 331
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
+ME+LIHHF L G++VP G+ Y E PKGE G Y++SDG KPYR KIRAP + +
Sbjct: 332 MHNMETLIHHFLLVVHGFNVPPGDTYCGTETPKGELGFYIVSDGSGKPYRMKIRAPSFVN 391
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ A +F+ KG+ +AD+ I G+ DIV GE DR
Sbjct: 392 MGAFDFMAKGYMIADIITIFGTYDIVMGECDR 423
>gi|311104661|ref|YP_003977514.1| NADH dehydrogenase (quinone) subunit D [Achromobacter xylosoxidans
A8]
gi|310759350|gb|ADP14799.1| NADH dehydrogenase (quinone), D subunit [Achromobacter xylosoxidans
A8]
Length = 418
Score = 438 bits (1128), Expect = e-121, Method: Composition-based stats.
Identities = 240/419 (57%), Positives = 305/419 (72%), Gaps = 28/419 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E KT++QA+P
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEHKTYIQALP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY +A+EKLLG+E P+R Q IRV++ EI R+L+HL+++ + A+DV
Sbjct: 62 YMDRLDYVSMMCNEHAYVMAIEKLLGVEAPLRAQYIRVMFDEITRLLNHLMSLGSHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMAVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDSMPQYGDTSKYRGDKE 181
Query: 170 ------------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF 217
++ I + + FP +++ LLT NRI+KQR V IG V E A GF
Sbjct: 182 MRVMNDARSGSLLDFIEDFTNRFPGCVDEYETLLTDNRIWKQRLVGIGVVDPERAKALGF 241
Query: 218 SGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCV 277
+G M+RGSG AWDLRK QPYE Y LDFDIP+G +GDCYDRYLVR+ EMRES +IIRQCV
Sbjct: 242 TGPMLRGSGVAWDLRKMQPYEVYDLLDFDIPVGVNGDCYDRYLVRIAEMRESNRIIRQCV 301
Query: 278 NRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPK 337
L +N GPV + KI PPKR MK +ME LIHHFKL+TEG+HVP GE YA+VE PK
Sbjct: 302 EWL--RNNPGPVMIENHKIAPPKRTAMKTNMEELIHHFKLFTEGFHVPPGEAYASVEHPK 359
Query: 338 GEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GEFG+Y +SDG NKPYR KIRAPG+ HLQA++ + +GH +AD I+G+ DIVFGE+DR
Sbjct: 360 GEFGIYAVSDGANKPYRLKIRAPGFVHLQALDEMSRGHMIADAVTIIGTQDIVFGEIDR 418
>gi|329118901|ref|ZP_08247596.1| NADH-quinone oxidoreductase subunit D [Neisseria bacilliformis ATCC
BAA-1200]
gi|327464929|gb|EGF11219.1| NADH-quinone oxidoreductase subunit D [Neisseria bacilliformis ATCC
BAA-1200]
Length = 418
Score = 438 bits (1128), Expect = e-121, Method: Composition-based stats.
Identities = 249/418 (59%), Positives = 309/418 (73%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K R++TINFGPQHPAAHGVLR+ILEL+GE + R DPHIGLLHRGTEKL ET+T+LQ +P
Sbjct: 3 TKLRNYTINFGPQHPAAHGVLRMILELEGETIVRADPHIGLLHRGTEKLAETRTYLQNLP 62
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M E AY LAVEKLLGI+IPIR + IR +++E+ RIL+HL+ + + A+D+
Sbjct: 63 YMDRLDYVSMMVNEQAYCLAVEKLLGIDIPIRAKYIRTMFAEVTRILNHLMGIGSHALDI 122
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP---------------- 167
GA+T L+ F +RE+LM YE SG+RMHAAYFRPGGV++D+P
Sbjct: 123 GAMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYEASKFRNAKVL 182
Query: 168 ---------ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
+++ I +C FPS ++ + LLT NRI+KQR V IG V E A GF+
Sbjct: 183 KELNEAREGTMLDFIDAFCQRFPSRIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFT 242
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
GVM+RGSG WD+RK+QPYE Y ++DFDIP+G +GDCYDRYL R+ EMR+SV+II+QC +
Sbjct: 243 GVMLRGSGIEWDVRKTQPYEVYDQMDFDIPVGLNGDCYDRYLCRINEMRQSVRIIQQCSD 302
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L K+ GPV D K+ PPKR +MK ME LIHHFKL+TEG HVP GE Y AVE PKG
Sbjct: 303 WL--KHNPGPVITGDHKVAPPKRTEMKMGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKG 360
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFGVY+ISDG NKPYR KIRAPG+AHLQ M+ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 361 EFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|171463529|ref|YP_001797642.1| NADH dehydrogenase I, D subunit [Polynucleobacter necessarius
subsp. necessarius STIR1]
gi|229891295|sp|B1XUK1|NUOD_POLNS RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|171193067|gb|ACB44028.1| NADH dehydrogenase I, D subunit [Polynucleobacter necessarius
subsp. necessarius STIR1]
Length = 417
Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats.
Identities = 230/418 (55%), Positives = 302/418 (72%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL +T+T++Q +P
Sbjct: 2 AQIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAKTRTWIQNIP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M+ EHAY +A+EKLL +++P+R Q IRV+Y E+ R+L+HLL + +DV
Sbjct: 62 YMDRLDYVSMMSNEHAYVMAIEKLLQVDVPLRAQYIRVMYDELTRLLNHLLWIGCHGLDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F +RE + YE SG+RMHAAY+RPGGV++D+P ++
Sbjct: 122 GAMAVFLYAFRDREDIFDMYEAVSGARMHAAYYRPGGVYRDLPDQMAQYDKSKIRSASAV 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + + F + +++ +LLT NRI+KQR VNIG V + A GF+
Sbjct: 182 KRLNENRSGTLLDFIEQFANGFDANVDEYCNLLTDNRIWKQRLVNIGIVTPKRALQLGFT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG WDLRK QPYE Y LDFDIP+G +GD YDRYLVRM EMR+S II+QCV
Sbjct: 242 GPMLRGSGIEWDLRKKQPYEVYDRLDFDIPVGVNGDSYDRYLVRMEEMRQSNHIIKQCVA 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L GPV +++ K+ PPKR DMK +ME LIHHFKL+TEG HVP GE Y+AVE PKG
Sbjct: 302 WLKA--NPGPVMSTNHKVSPPKRVDMKTNMEELIHHFKLFTEGIHVPDGEAYSAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YLISDG NKPYR KIRAPG+ HL +M+ + +GH LAD I+G+ DIVFGE+DR
Sbjct: 360 EFGIYLISDGANKPYRMKIRAPGFVHLSSMDEMSRGHMLADAVTIIGTQDIVFGEIDR 417
>gi|317401991|gb|EFV82591.1| NADH dehydrogenase subunit I [Achromobacter xylosoxidans C54]
Length = 418
Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats.
Identities = 239/419 (57%), Positives = 308/419 (73%), Gaps = 28/419 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E KT++QA+P
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEHKTYIQALP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY +A+EKLLG+E P+R Q IRV++ EI R+L+HL+++ + A+DV
Sbjct: 62 YMDRLDYVSMMCNEHAYVMAIEKLLGVEAPLRAQYIRVMFDEITRLLNHLMSLGSHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMAVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDTMPQYGETSKYRGEKE 181
Query: 170 ------------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF 217
++ I + + FP+ +++ LLT NRI+KQR V IG V + A GF
Sbjct: 182 VRVMNDARSGSLLDFIEDFTNRFPACVDEYETLLTDNRIWKQRLVGIGVVDPDRAKALGF 241
Query: 218 SGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCV 277
+G M+RGSG AWDLRK QPYE Y LDFDIP+G +GDCYDRYLVR+ EMRES +IIRQCV
Sbjct: 242 TGPMLRGSGVAWDLRKMQPYEVYDLLDFDIPVGVNGDCYDRYLVRIAEMRESNRIIRQCV 301
Query: 278 NRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPK 337
L +N GPV + KI PPKR MK +ME LIHHFKL+TEG+HVP GE +A+VE PK
Sbjct: 302 EWL--RNNPGPVMIENHKIAPPKRTAMKTNMEELIHHFKLFTEGFHVPPGEAFASVEHPK 359
Query: 338 GEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GEFG+YL+SDG NKPYR KIRAPG+AHLQ+++ + +GH +AD I+G+ DIVFGE+DR
Sbjct: 360 GEFGIYLVSDGANKPYRLKIRAPGFAHLQSLDEMSRGHMIADAVTIIGTQDIVFGEIDR 418
>gi|124515813|gb|EAY57322.1| NADH dehydrogenase (ubiquinone), D subunit [Leptospirillum rubarum]
Length = 423
Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats.
Identities = 174/392 (44%), Positives = 264/392 (67%), Gaps = 4/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ F +N GPQHP+ HGVLR++LELDGE ++R P +G LHRGTEK+ E +T+ Q +P
Sbjct: 36 QTDQFLLNMGPQHPSTHGVLRVLLELDGERIKRSVPDLGYLHRGTEKIAEYRTYNQIIPL 95
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDYV+ M +A+ VEKLL +++P R + +R + +E+ RI++HL + TQA+D+G
Sbjct: 96 TDRLDYVSAMANNYAFVRTVEKLLQLKVPDRAEFVRTIVAEVQRIVNHLFWLGTQALDIG 155
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++ + F ERE+L+ +E G+R+ Y+R GGV D+P +++ + + ++F +
Sbjct: 156 AMSVFFYTFREREELLDIFEILCGARLTTNYYRVGGVESDMPQHVIDRLYKFVETFEEHI 215
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ + LL NRI+ R NI + EDA +G SG +RGSG +DLRK +PY Y +++
Sbjct: 216 QEYNTLLETNRIWLARTKNIAVITGEDAINFGLSGPTLRGSGIPYDLRKFEPYGAYDQVE 275
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FD+P+G++GD YDRY +R+ EMR+S KIIRQC+++L GP+ D K+ P++ ++
Sbjct: 276 FDVPVGQNGDIYDRYWIRIEEMRQSAKIIRQCLDKLPN----GPIMTDDHKVSFPEKGNV 331
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
+ME+LIHHF L G++VP G+ Y E PKGE G Y++SDG KPYR KIRAP + +
Sbjct: 332 MHNMETLIHHFLLVVHGFNVPPGDTYCGTETPKGELGFYIVSDGSGKPYRMKIRAPSFVN 391
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ A +F+ KG+ +AD+ I G+ DIV GE DR
Sbjct: 392 MGAFDFMAKGYMIADIITIFGTYDIVMGECDR 423
>gi|321264860|ref|XP_003197147.1| NADH-ubiquinone oxidoreductase [Cryptococcus gattii WM276]
gi|317463625|gb|ADV25360.1| NADH-ubiquinone oxidoreductase, putative [Cryptococcus gattii
WM276]
Length = 455
Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats.
Identities = 246/394 (62%), Positives = 306/394 (77%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ + R FT+NFGPQHPAAHGVLRLILEL+GE + R DPHIGLLHRGTEKLIE K + QA+
Sbjct: 66 EAEMRHFTVNFGPQHPAAHGVLRLILELNGEEILRADPHIGLLHRGTEKLIEYKNYTQAL 125
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E Y++AVE+LL IE+P R + IR L+ EI R+L+HL+ V T AMD
Sbjct: 126 PYFDRLDYVSMMTNELCYSIAVERLLNIEVPERAKWIRTLFGEITRVLNHLMAVLTHAMD 185
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTP LWGFEEREKLM FYER SG+RMHAAY RPGGV D+P L++DI W F S
Sbjct: 186 VGALTPFLWGFEEREKLMEFYERVSGARMHAAYVRPGGVAFDLPHGLLDDIFKWATQFSS 245
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+++I +++TGNRI+KQR + IG V + A + FSGVM+RGSG WD+RK PY+ Y +
Sbjct: 246 RVDEIEEVVTGNRIWKQRTIGIGPVTAQQALDYSFSGVMLRGSGIPWDIRKVAPYDAYDK 305
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++FD+PIGK+GDCYDRYL R+ E RES++II QC+N++ G D KIVPP RA
Sbjct: 306 VEFDVPIGKNGDCYDRYLCRVQEFRESLRIIGQCLNKIPD----GAYKIDDHKIVPPPRA 361
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
MK SMESLIHHFK+++EGY VP GE YAA+EAPKGE GVYL+SDG N+PY+CKIRAPG+
Sbjct: 362 SMKESMESLIHHFKIFSEGYSVPPGETYAAIEAPKGEMGVYLVSDGSNRPYKCKIRAPGF 421
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL +F+ + H L D AI+G++D+VFGEVDR
Sbjct: 422 AHLAGADFMMRHHFLPDAVAIIGTMDLVFGEVDR 455
>gi|226939459|ref|YP_002794532.1| NADH dehydrogenase subunit D [Laribacter hongkongensis HLHK9]
gi|226714385|gb|ACO73523.1| NADH dehydrogenase I, D subunit [Laribacter hongkongensis HLHK9]
Length = 417
Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats.
Identities = 242/418 (57%), Positives = 304/418 (72%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ R++T+NFGPQHPAAHGVLRL+LELDGE+VER DPHIGLLHRGTEKL ETKTFLQ VP
Sbjct: 2 AEIRNYTLNFGPQHPAAHGVLRLVLELDGEVVERADPHIGLLHRGTEKLAETKTFLQNVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDY++ M EHAY +A+EKLLG+++P+R Q IRV++ EI RIL+HLL V +D+
Sbjct: 62 YMDRLDYMSMMANEHAYVMAIEKLLGVDVPLRAQYIRVMFDEITRILNHLLWVGAHGLDI 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+T L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMTVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDSMPQYEFSKIKNDREL 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP +++ LLT NRI+KQR V IG V E A GF+
Sbjct: 182 ARLNENRQGSLLDFIDDFTSRFPKCVDEYETLLTDNRIWKQRTVGIGVVSPERALQLGFT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG WD+RK QPYE Y LDFDIP+G +GDCYDRYLVR+ E+R+S +II+QCV+
Sbjct: 242 GAMLRGSGIEWDVRKKQPYEVYDRLDFDIPVGVNGDCYDRYLVRIEELRQSNRIIKQCVD 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ PP RADMK +ME LIHHFKL++EG HVP GE Y +E PKG
Sbjct: 302 WL--RKNPGPVITDNHKVAPPCRADMKSNMEELIHHFKLFSEGMHVPEGEAYVGIEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YL+SDG NKPYR KIRAPGYAHL +M+ + +GH LADV +I+G+ DIVFGE+DR
Sbjct: 360 EFGIYLVSDGANKPYRLKIRAPGYAHLSSMDEMSRGHMLADVVSIIGTQDIVFGEIDR 417
>gi|270158111|ref|ZP_06186768.1| NADH dehydrogenase (quinone) D subunit [Legionella longbeachae
D-4968]
gi|289163624|ref|YP_003453762.1| NADH dehydrogenase I chain D [Legionella longbeachae NSW150]
gi|269990136|gb|EEZ96390.1| NADH dehydrogenase (quinone) D subunit [Legionella longbeachae
D-4968]
gi|288856797|emb|CBJ10608.1| NADH dehydrogenase I chain D [Legionella longbeachae NSW150]
Length = 417
Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats.
Identities = 232/417 (55%), Positives = 296/417 (70%), Gaps = 27/417 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ +++T+NFGPQHPAAHGVLRL+LEL+GE + R DPHIGLLHR TEKL ETK ++Q + Y
Sbjct: 3 ELKNYTLNFGPQHPAAHGVLRLVLELEGETIIRADPHIGLLHRATEKLAETKPYIQTIGY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDYV+ M EHAY A+EKLLGIEIP+R Q IR ++ E+ RIL+HLL + A+D+G
Sbjct: 63 MDRLDYVSMMCNEHAYVRAIEKLLGIEIPLRAQYIRTMFDEVTRILNHLLWLGAIALDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL--------------- 169
A+T L+ F ERE L YE SG+RMHA Y+RPGGV +D+P +
Sbjct: 123 AMTVFLYCFREREDLFDCYEAVSGARMHATYYRPGGVARDLPDAMPKYQTSKWHNDREVE 182
Query: 170 ----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
++ + + + FP +++ LLT NRI+KQR V+IG V EDA WGF+G
Sbjct: 183 KLNEDRNGSLLDFLWAFTERFPRCVDEYETLLTDNRIWKQRTVDIGIVSPEDALQWGFTG 242
Query: 220 VMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR 279
M+RGSG AWDLRK Q Y Y +DFDIP+GK GDCYDRYLVR+ E+R+S +IIRQC+
Sbjct: 243 PMLRGSGIAWDLRKKQSYAAYDRVDFDIPVGKTGDCYDRYLVRVEELRQSNRIIRQCIEW 302
Query: 280 LLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGE 339
L GPV D K+ PP+R +MK ME LIHHFKL+TEG+ +P GEVY+AVEAPKGE
Sbjct: 303 LKA--NPGPVRVDDHKVTPPRRVEMKADMEELIHHFKLFTEGFCLPAGEVYSAVEAPKGE 360
Query: 340 FGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
FG+Y++SDG NKPYR KIRAPG+AHL + + + +GH +AD AIL S DIVFGE+DR
Sbjct: 361 FGIYMVSDGANKPYRMKIRAPGFAHLSSFDEMSRGHMIADGVAILASQDIVFGEIDR 417
>gi|266654|sp|P29916|NQO4_PARDE RecName: Full=NADH-quinone oxidoreductase subunit 4; AltName:
Full=NADH dehydrogenase I, subunit 4; AltName:
Full=NDH-1, subunit 4
gi|150623|gb|AAA03038.1| NADH dehydrogenase [Paracoccus denitrificans]
Length = 412
Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats.
Identities = 274/394 (69%), Positives = 331/394 (84%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++ R+F INFGPQHPAAHG+LR++LELDGEIVER DPHIGLLHRGTEKL+E++T+LQ +
Sbjct: 21 EQSIRNFNINFGPQHPAAHGLLRMVLELDGEIVERADPHIGLLHRGTEKLMESRTYLQNL 80
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DRLDYVAPMNQEHA+ LA+E+L G IP R LIRVLYSEIGRIL+HL+ VTT AMD
Sbjct: 81 PYLDRLDYVAPMNQEHAWCLAIERLTGTVIPRRASLIRVLYSEIGRILNHLMGVTTGAMD 140
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTPPLWGFE RE+LM+FYERA G+R+HAAYFRPGGVHQD+PP+L++DI WC+ FP
Sbjct: 141 VGALTPPLWGFEAREELMIFYERACGARLHAAYFRPGGVHQDLPPDLLDDIEEWCERFPK 200
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++D+ LLT NRIFKQR V+IG V DA WG++GVM+RGSG AWDLR+SQPYECY E
Sbjct: 201 LVDDLDTLLTENRIFKQRLVDIGIVTEADALDWGYTGVMVRGSGLAWDLRRSQPYECYDE 260
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF IP+G++GDCYDRYL RM EMRES KI++Q V +L G V + K+ PP+RA
Sbjct: 261 FDFQIPVGRNGDCYDRYLCRMAEMRESCKIMQQAVQKLRA-EPAGDVL-ARGKLTPPRRA 318
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MKR MESLIHHFKLYTEG+ VP GEVYAAVE PKGEFGVYL++DG NKP+R K+RAPG+
Sbjct: 319 EMKRDMESLIHHFKLYTEGFKVPAGEVYAAVEGPKGEFGVYLVADGTNKPWRAKLRAPGF 378
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ+++++ +GH LADV AI+ +LDIVFGEVDR
Sbjct: 379 AHLQSIDWMSRGHMLADVPAIIATLDIVFGEVDR 412
>gi|322708966|gb|EFZ00543.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Metarhizium
anisopliae ARSEF 23]
Length = 468
Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats.
Identities = 237/392 (60%), Positives = 302/392 (77%), Gaps = 4/392 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
++ +K R +T+NFGPQHPAAHGVLRLILEL+GE + R DPH+GLLHRGTEKLIE K++LQ
Sbjct: 79 VEDRKVRHYTVNFGPQHPAAHGVLRLILELNGEEIIRADPHVGLLHRGTEKLIEYKSYLQ 138
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+ M E +ALAVEKLL IEIP R + IR L+ EI R+L+HL++V + A
Sbjct: 139 ALPYFDRLDYVSMMTNEQCFALAVEKLLNIEIPDRAKYIRTLFGEITRVLNHLMSVLSHA 198
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTP LWGFEEREKLM FYER SG+R+HAAY RPGGVHQDIP L++DI W F
Sbjct: 199 MDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPVGLLDDIYQWATQF 258
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+++ ++LT NRI+ +R +G V DA F+GVM+RGSG WD+RKSQPY+ Y
Sbjct: 259 GDRIDETEEMLTDNRIWIERLRGVGVVSAADALNLSFTGVMLRGSGVPWDIRKSQPYDAY 318
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+++FD+P+GK+GDCYDRYL RM E R+S++II QC+N++ GPV D K+ PP
Sbjct: 319 DKVEFDVPVGKNGDCYDRYLCRMEEFRQSLRIIHQCLNQMPA----GPVRVEDYKVSPPP 374
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R MK +ME+LIHHF LYT+GY VP GE Y+ +EAPKGE GVY++SDG +PYRC IRAP
Sbjct: 375 RTAMKENMEALIHHFLLYTKGYAVPPGETYSVIEAPKGEMGVYVVSDGSERPYRCHIRAP 434
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFG 392
G+AHL + + KGH LAD A++G++D+VFG
Sbjct: 435 GFAHLGGFDHVSKGHLLADAVAVIGTMDLVFG 466
>gi|77166020|ref|YP_344545.1| NADH dehydrogenase subunit D [Nitrosococcus oceani ATCC 19707]
gi|254436326|ref|ZP_05049832.1| NADH dehydrogenase (quinone), D subunit [Nitrosococcus oceani
AFC27]
gi|123593540|sp|Q3J831|NUOD_NITOC RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|76884334|gb|ABA59015.1| NADH dehydrogenase subunit D [Nitrosococcus oceani ATCC 19707]
gi|207088016|gb|EDZ65289.1| NADH dehydrogenase (quinone), D subunit [Nitrosococcus oceani
AFC27]
Length = 417
Score = 438 bits (1126), Expect = e-121, Method: Composition-based stats.
Identities = 235/418 (56%), Positives = 297/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ R+FT+NFGPQHPAAHGVLRL+LE+DGEI++R DPH+GLLHR TEKL E+K F Q++
Sbjct: 2 AEIRNFTLNFGPQHPAAHGVLRLVLEMDGEIIQRADPHVGLLHRATEKLAESKPFNQSIG 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EH Y A+E LLGIE P+R Q IR ++ EI RIL+HL+ + +D+
Sbjct: 62 YMDRLDYVSMMCNEHGYVKAIETLLGIEPPLRAQYIRTMFDEITRILNHLMWLGAHGLDI 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+T L+ F ERE LM YE SG+RMHA Y+RPGGV++D+P +
Sbjct: 122 GAMTVFLYCFREREDLMDCYEAVSGARMHATYYRPGGVYRDLPETMPGYQPSKWHNEKEV 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP+ +++ LLT NRI+KQR V IG V E A GF+
Sbjct: 182 AIINRNREGSLLDFIEDFTARFPTCVDEYETLLTDNRIWKQRTVGIGVVTPERALQLGFT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG WDLRK QPY Y ++DFDIP+G +GDCYDRYLVR+ EMR+S +II+QCV+
Sbjct: 242 GPMLRGSGVEWDLRKKQPYAAYDQIDFDIPVGVNGDCYDRYLVRIEEMRQSNQIIKQCVD 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV ++ K+ P R MK ME LIHHFKL+TEGY VP GE YAAVEAPKG
Sbjct: 302 WL--RKNPGPVIVNNYKVAAPPREKMKNDMEVLIHHFKLFTEGYCVPEGEAYAAVEAPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFGVYLISDG NKPYR K+RAPG+AHL AM+ + +GH LADV AI+G++DIVFGE+DR
Sbjct: 360 EFGVYLISDGANKPYRLKVRAPGFAHLAAMDEMVQGHMLADVVAIIGTMDIVFGEIDR 417
>gi|254496124|ref|ZP_05109023.1| NADH dehydrogenase I, D subunit [Legionella drancourtii LLAP12]
gi|254354665|gb|EET13301.1| NADH dehydrogenase I, D subunit [Legionella drancourtii LLAP12]
Length = 417
Score = 438 bits (1126), Expect = e-121, Method: Composition-based stats.
Identities = 233/417 (55%), Positives = 300/417 (71%), Gaps = 27/417 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ +++T+NFGPQHPAAHGVLRL+LEL+GE + R DPHIGLLHR TEKL ETK ++Q + Y
Sbjct: 3 ELKNYTLNFGPQHPAAHGVLRLVLELEGETIVRADPHIGLLHRATEKLAETKPYIQNIGY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDYV+ M EHAY A+EKLLGIE+P+R Q IR ++ E+ RIL+HLL + A+D+G
Sbjct: 63 MDRLDYVSMMCNEHAYVNAIEKLLGIEVPVRAQYIRTMFDEVTRILNHLLWLGAIALDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL--------------- 169
A+T L+ F ERE L YE SG+RMHA Y+RPGGV +D+P +
Sbjct: 123 AMTVFLYCFREREDLFDCYEAVSGARMHATYYRPGGVARDLPDTMAQYKASRWHSEREVE 182
Query: 170 ----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
++ + + + FP +++ LLT NRI+KQR V+IG V E+A WGF+G
Sbjct: 183 KLNEDRCGSLLDFLWAFTERFPRCVDEYETLLTDNRIWKQRTVDIGVVSPEEALQWGFTG 242
Query: 220 VMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR 279
M+RGSG AWDLRK Q Y Y ++DFDIP+GK GDCYDRYLVR+ E+R+S +IIRQC+
Sbjct: 243 PMLRGSGIAWDLRKKQSYAAYDKVDFDIPVGKTGDCYDRYLVRVEELRQSNRIIRQCIEW 302
Query: 280 LLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGE 339
L +N GPV D KI PP+R +MK ME+LIHHFKL+TEG+ +P GEVY+AVEAPKGE
Sbjct: 303 L--RNNPGPVRVDDHKITPPRRVEMKHDMEALIHHFKLFTEGFCLPRGEVYSAVEAPKGE 360
Query: 340 FGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
FG+Y++SDG NKPYR KIRAPG+AHL + + + +GH LAD AIL S DIVFGE+DR
Sbjct: 361 FGIYMVSDGANKPYRLKIRAPGFAHLSSYDEMVRGHMLADGVAILASQDIVFGEIDR 417
>gi|255019910|ref|ZP_05291985.1| NADH-ubiquinone oxidoreductase chain D [Acidithiobacillus caldus
ATCC 51756]
gi|254970690|gb|EET28177.1| NADH-ubiquinone oxidoreductase chain D [Acidithiobacillus caldus
ATCC 51756]
Length = 417
Score = 438 bits (1126), Expect = e-121, Method: Composition-based stats.
Identities = 248/417 (59%), Positives = 302/417 (72%), Gaps = 27/417 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ +FT+NFGPQHP+AHGVLRL+LELDGE++ER DPHIGLLHR TEKL E KT+LQ +PY
Sbjct: 3 EINNFTMNFGPQHPSAHGVLRLVLELDGEVIERADPHIGLLHRATEKLAEHKTYLQNLPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDYV+ M EHAY AVEKLLG+EIPIR Q IR L+ EI RIL+HLL + A+DVG
Sbjct: 63 MDRLDYVSMMCNEHAYCRAVEKLLGVEIPIRAQYIRTLFDEITRILNHLLWLGAYALDVG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL--------------- 169
A++ L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 123 AMSVFLYCFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPERMPQYEPSPYRDARRLA 182
Query: 170 ----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
++ I + FP +++ LLT NRI+KQR V IG V E A GF+G
Sbjct: 183 ELNANRQGSVLDFIEDFTRRFPGYVDEYETLLTDNRIWKQRTVGIGVVSPERAIALGFTG 242
Query: 220 VMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR 279
M+R SG AWDLR+S+PY Y++LDFDIP+GK GDCYDRYLVR+ EMR+S +II QCV+
Sbjct: 243 PMLRASGVAWDLRRSEPYAAYADLDFDIPVGKEGDCYDRYLVRVAEMRQSNRIIAQCVDW 302
Query: 280 LLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGE 339
L GPV D KI PP R MK SME+LIHHFKL+TEG VP GEVYAAVEAPKGE
Sbjct: 303 LRR--NPGPVIVDDYKIAPPPRETMKTSMEALIHHFKLFTEGMAVPPGEVYAAVEAPKGE 360
Query: 340 FGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
FG+YL+SDG NKPYR KIRAPG+AHL AM+ + +GH +ADV AIL ++DIVFGE+DR
Sbjct: 361 FGIYLVSDGANKPYRMKIRAPGFAHLAAMDEMARGHMIADVVAILATMDIVFGEIDR 417
>gi|292559466|ref|YP_003540834.1| NADH dehydrogenase subunit 7 [Hartmannella vermiformis]
gi|290775719|gb|ADD62218.1| NADH dehydrogenase subunit 7 [Hartmannella vermiformis]
Length = 399
Score = 438 bits (1126), Expect = e-121, Method: Composition-based stats.
Identities = 259/393 (65%), Positives = 309/393 (78%), Gaps = 3/393 (0%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K+S+ T+NFGPQHPAAHGVLRL+LELDGE V R DPHIGLLHRGTEKLIE KT+LQA+P
Sbjct: 10 KESKILTLNFGPQHPAAHGVLRLVLELDGETVLRADPHIGLLHRGTEKLIEYKTYLQALP 69
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M QEH Y LAVE LL IP+R + IRV++SEI RIL+HLL VTT A+DV
Sbjct: 70 YFDRLDYVSMMAQEHGYCLAVENLLKCRIPLRAKYIRVIFSEITRILNHLLAVTTHALDV 129
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP LWGFEEREKLM FYER SG+RMHAAYFRPGGV QD P L++DI +C+ F
Sbjct: 130 GALTPFLWGFEEREKLMEFYERVSGARMHAAYFRPGGVAQDFPLGLLDDIYYFCNQFLYR 189
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ +I DLLT NRI+KQR V+IG V E A WGFSGVM+RGSG WDLR ++PYE Y +L
Sbjct: 190 IAEIEDLLTANRIWKQRLVDIGVVSYEQALDWGFSGVMLRGSGVLWDLRVNEPYEVYEDL 249
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
F +P GK GDCYDRYL+R+ EM++SV II QC+ + K G + D KI PP RA
Sbjct: 250 KFLVPTGKRGDCYDRYLIRVEEMKQSVNIILQCLELMP---KTGFIKVDDRKISPPSRAF 306
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK SMESLIHHFKL++EGY+V E YAA+EAPKGEFGVY+ SDG N+P RC+I+APG+
Sbjct: 307 MKFSMESLIHHFKLFSEGYNVKSEESYAAIEAPKGEFGVYVKSDGTNRPSRCRIKAPGFL 366
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQA++F+ K H LADV ++G+ DIVFGE+DR
Sbjct: 367 HLQALDFMSKYHLLADVVTVIGTQDIVFGEIDR 399
>gi|302879338|ref|YP_003847902.1| NADH dehydrogenase I, D subunit [Gallionella capsiferriformans
ES-2]
gi|302582127|gb|ADL56138.1| NADH dehydrogenase I, D subunit [Gallionella capsiferriformans
ES-2]
Length = 417
Score = 438 bits (1126), Expect = e-121, Method: Composition-based stats.
Identities = 228/417 (54%), Positives = 296/417 (70%), Gaps = 27/417 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ +++T+NFGPQHPAAHGVLRL+LELDGE++ R DPHIGLLHR TEKL E KTFLQ+VPY
Sbjct: 3 EIKNYTMNFGPQHPAAHGVLRLVLELDGEVIVRADPHIGLLHRATEKLAEHKTFLQSVPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDYV+ + EHAY A+EKL GI++P+R Q IRV++ EI RIL+HL+ + +D+G
Sbjct: 63 MDRLDYVSMLCNEHAYVQAIEKLAGIDVPLRAQYIRVMFDEITRILNHLMWLGAHGLDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL--------------- 169
A+T L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 123 AMTVFLYCFREREDLMDAYEAVSGARMHAAYYRPGGVYRDLPDTMPQYEASKIHNAAAVK 182
Query: 170 ----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
++ + + FP+ +++ LLT NRI+KQR V IG V E A G +G
Sbjct: 183 KMNANRQGSLLDFLEDFTRRFPTYVDEYETLLTDNRIWKQRTVGIGIVTPERALALGMTG 242
Query: 220 VMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR 279
M+RGSG WDLRK QPY Y ++DFD+P+G +GD YDRYLVR+ EMR+S +II+QC++
Sbjct: 243 PMLRGSGVEWDLRKKQPYAAYDKVDFDVPVGVNGDSYDRYLVRVEEMRQSNRIIKQCIDW 302
Query: 280 LLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGE 339
L + GPV S+ K P R MK++ME LIHHFKL+TEG VP GE YAAVE PKGE
Sbjct: 303 L--RVNPGPVMTSNHKYAAPGRESMKQNMEELIHHFKLFTEGMRVPEGEAYAAVEHPKGE 360
Query: 340 FGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
FG+YL+SDG NKPYR KIRAPG+ HL A++ + +GH +ADV I+G+ DIVFGE+DR
Sbjct: 361 FGIYLVSDGANKPYRLKIRAPGFPHLAALDEMARGHMIADVVTIIGTQDIVFGEIDR 417
>gi|148657775|ref|YP_001277980.1| NADH dehydrogenase I subunit D [Roseiflexus sp. RS-1]
gi|218534369|sp|A5UZH7|NUOD2_ROSS1 RecName: Full=NADH-quinone oxidoreductase subunit D 2; AltName:
Full=NADH dehydrogenase I subunit D 2; AltName:
Full=NDH-1 subunit D 2
gi|148569885|gb|ABQ92030.1| NADH dehydrogenase I, D subunit [Roseiflexus sp. RS-1]
Length = 417
Score = 438 bits (1126), Expect = e-121, Method: Composition-based stats.
Identities = 185/392 (47%), Positives = 254/392 (64%), Gaps = 1/392 (0%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ + +N GP HP+ HGVLRL++ELDGE V V P IG LH G EK +E+KT+ +AV
Sbjct: 27 EKETMVLNMGPHHPSTHGVLRLVVELDGETVVDVAPDIGFLHTGIEKTMESKTYQKAVVL 86
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR DY+AP++ +Y LAVEKLLG E+P R + RVL E+ RI SHL+ + T A+D+
Sbjct: 87 TDRTDYLAPLSNNLSYVLAVEKLLGCEVPERATVARVLLVELQRIASHLVWLGTHALDLA 146
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++ L+GF ERE+++ +E SG+RM +YFR GG+ D+P + + P +
Sbjct: 147 AMSVFLYGFREREQILDIFELVSGARMMTSYFRVGGLAYDLPAGFDAAVEAFLQIMPGRI 206
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
++ LLT N ++ +R IG + E A G +G +R +G AWDLRK+ PY Y
Sbjct: 207 DEYEALLTDNPLWIERTQGIGAIDSEAAIALGLTGPGLRATGVAWDLRKTMPYCGYETYS 266
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F IP HGD YDRYLVRM EMRESV I RQ + RL GP SD KI PP ++++
Sbjct: 267 FAIPTATHGDIYDRYLVRMAEMRESVSICRQALQRLRDIGP-GPYMTSDRKIAPPPKSEI 325
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
+SME+LIHHFKL+TEG+ P G+ AAVE+P+GE Y++SDG KPYR RAP + +
Sbjct: 326 TQSMEALIHHFKLWTEGFKPPRGDALAAVESPRGELATYIVSDGSAKPYRVHFRAPSFVN 385
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
LQ++ + +GH +AD+ A++ SLD V GEVDR
Sbjct: 386 LQSLPHMARGHLVADLVALIASLDPVLGEVDR 417
>gi|332285014|ref|YP_004416925.1| NADH dehydrogenase subunit D [Pusillimonas sp. T7-7]
gi|330428967|gb|AEC20301.1| NADH dehydrogenase subunit D [Pusillimonas sp. T7-7]
Length = 418
Score = 438 bits (1126), Expect = e-121, Method: Composition-based stats.
Identities = 238/419 (56%), Positives = 304/419 (72%), Gaps = 28/419 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E KTFLQA+P
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEHKTFLQALP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY +AVE L+GI++P+R Q IRV++ EI R+L+HL+++ + A+DV
Sbjct: 62 YMDRLDYVSMMCNEHAYVMAVENLVGIKVPLRAQYIRVMFDEITRLLNHLMSLGSHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMAVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDTMPQYGQSSKYRGEKE 181
Query: 170 ------------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF 217
++ I + + FP+ +++ LLT NRI+KQR V IG V + A GF
Sbjct: 182 LRAMNEARSGSLLDFIEDFTNRFPTCVDEYETLLTDNRIWKQRLVGIGVVDPDRAKALGF 241
Query: 218 SGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCV 277
+G M+RGSG WDLRK QPYE Y LDFDIP+G +GDCYDRYLVR+ EMRES +IIRQCV
Sbjct: 242 TGPMLRGSGVEWDLRKHQPYEVYDRLDFDIPVGTNGDCYDRYLVRIAEMRESNRIIRQCV 301
Query: 278 NRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPK 337
L +N GPV + KI PP R MK ME LIHHFKL+TEG HVP GE YA+VE PK
Sbjct: 302 EWL--RNNPGPVIIDNHKIAPPSRERMKTGMEDLIHHFKLFTEGMHVPAGETYASVEHPK 359
Query: 338 GEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GEFG+Y++SDG NKPYR KIRAPG+AHLQ+++ + +GH +AD I+G+ DIVFGE+DR
Sbjct: 360 GEFGIYMVSDGANKPYRVKIRAPGFAHLQSLDEMSRGHMIADAVTIIGTQDIVFGEIDR 418
>gi|74006142|ref|XP_860254.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase 49 kDa
subunit, mitochondrial precursor (Complex I-49KD)
(CI-49KD) isoform 4 [Canis familiaris]
Length = 451
Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats.
Identities = 241/389 (61%), Positives = 301/389 (77%), Gaps = 16/389 (4%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
+ T+NFGPQHPAAHGVLRL++EL GE+V + DPHIGLLHRGTEKLIE KT+LQA+PYFDR
Sbjct: 79 NLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDR 138
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
LDYV+ M E AY+LAVEKLL I+ P R Q IRVL+ EI R+L+H++ VTT A+D+GA+T
Sbjct: 139 LDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRLLNHIMAVTTHALDIGAMT 198
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
P W FEEREK+ FYER SG+RMHAAY RPGG + + +F ++++
Sbjct: 199 PFFWMFEEREKMFEFYERVSGARMHAAYVRPGG------------VHQFSKNFSLRVDEL 246
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
++LT NRI+K R V+IG V EDA +GFSGVM+RGSG WDLRK+QPY+ Y ++DFD+
Sbjct: 247 EEMLTNNRIWKNRTVDIGVVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVDFDV 306
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
PIG GDCYDRYL R+ EMR+S++II QC+N++ G + D K+ PPKRA+MK S
Sbjct: 307 PIGSRGDCYDRYLCRVEEMRQSLRIIEQCLNKM----PPGEIKVDDAKVSPPKRAEMKTS 362
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
MESLIHHFKLYTEGY VP G Y A+EAPKGEFGVYL+SDG ++PYRCKI+APG+AHL
Sbjct: 363 MESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAG 422
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 423 LDKMSKGHMLADVVAIIGTQDIVFGEVDR 451
>gi|82702223|ref|YP_411789.1| NADH dehydrogenase subunit D [Nitrosospira multiformis ATCC 25196]
gi|123544730|sp|Q2YA24|NUOD_NITMU RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|82410288|gb|ABB74397.1| NADH dehydrogenase subunit D [Nitrosospira multiformis ATCC 25196]
Length = 417
Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats.
Identities = 242/418 (57%), Positives = 308/418 (73%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ R++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E KT++Q+VP
Sbjct: 2 AEIRNYTMNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEYKTYIQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY +A+EKLL +E+PIR Q IRV++ EI RIL+HLL + A+DV
Sbjct: 62 YMDRLDYVSMMANEHAYVMAIEKLLQLEVPIRAQYIRVMFDEITRILNHLLWLGAHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+T L+ F +RE LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMTVFLYAFRDREDLMDAYESVSGARMHAAYYRPGGVYRDLPDSMPQYKASKIHDEKTT 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + + FP+ +++ LLT NRI+KQR V IGTV E A GF+
Sbjct: 182 KARNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGIGTVSPERAMALGFT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG WDLRK QPYE Y +LDFDIP+G +GDCYDRYLVR+ E R+S +IIRQCV+
Sbjct: 242 GPMLRGSGVEWDLRKKQPYEVYDQLDFDIPVGVNGDCYDRYLVRIEEFRQSNRIIRQCVD 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ PP R +MK++ME LIHHFKL+TEG+HVP GE YAAVE PKG
Sbjct: 302 WL--RKNPGPVITDNHKVAPPSRVNMKQNMEELIHHFKLFTEGFHVPPGETYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YLISDG N PYR KIRAPG+AHL A++ + +GH +ADV AI+G+ DIVFGE+DR
Sbjct: 360 EFGIYLISDGANMPYRMKIRAPGFAHLAALDEMSRGHMIADVVAIIGTQDIVFGEIDR 417
>gi|33592010|ref|NP_879654.1| NADH dehydrogenase subunit D [Bordetella pertussis Tohama I]
gi|81425361|sp|Q7VZQ2|NUOD_BORPE RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|33571654|emb|CAE41147.1| respiratory-chain NADH dehydrogenase, 49 kDa subunit [Bordetella
pertussis Tohama I]
gi|332381426|gb|AEE66273.1| NADH dehydrogenase subunit D [Bordetella pertussis CS]
Length = 418
Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats.
Identities = 239/419 (57%), Positives = 308/419 (73%), Gaps = 28/419 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E KTF+QA+P
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEHKTFIQALP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY +A+EKLLGIE P+R Q IRV++ EI R+L+HL+++ + A+DV
Sbjct: 62 YMDRLDYVSMMCNEHAYVMAIEKLLGIEAPLRAQYIRVMFDEITRVLNHLMSLGSHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMAVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDTMPQYGDSSKYRGEKE 181
Query: 170 ------------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF 217
++ I + + FPS +++ LLT NRI+KQR V IG V + A GF
Sbjct: 182 VRAMNDARSGSLLDFIEDFTNRFPSCVDEYETLLTDNRIWKQRLVGIGVVDPDRAKALGF 241
Query: 218 SGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCV 277
+G M+RGSG AWDLRK+QPYE Y +DFD+P+G +GDCYDRYLVR+ EMRES +IIRQCV
Sbjct: 242 TGPMLRGSGVAWDLRKTQPYEVYDLMDFDVPVGVNGDCYDRYLVRVAEMRESNRIIRQCV 301
Query: 278 NRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPK 337
L +N GPV + KI PP R MK +ME LIHHFKL++EG+HVP GE YAAVE PK
Sbjct: 302 EWL--RNNPGPVMIENHKIAPPSRTAMKSNMEELIHHFKLFSEGFHVPPGEAYAAVEHPK 359
Query: 338 GEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GEFG+YL++DG NKPYR KIRAPG+AHLQ+++ + +GH +AD I+G+ DIVFGE+DR
Sbjct: 360 GEFGIYLVADGANKPYRLKIRAPGFAHLQSLDEMARGHMIADAVTIIGTQDIVFGEIDR 418
>gi|254466915|ref|ZP_05080326.1| NADH dehydrogenase (quinone), D subunit [Rhodobacterales bacterium
Y4I]
gi|206687823|gb|EDZ48305.1| NADH dehydrogenase (quinone), D subunit [Rhodobacterales bacterium
Y4I]
Length = 412
Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats.
Identities = 286/394 (72%), Positives = 334/394 (84%), Gaps = 3/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++K R+F INFGPQHPAAHGVLRL+LELDGEIVER DPHIGLLHRGTEKL+E++T+LQ +
Sbjct: 22 EQKIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNL 81
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYVAPMNQEHA+ LA+EKL G +P RGQLIRVLYSEIGR+L+HLLNVTTQAMD
Sbjct: 82 PYFDRLDYVAPMNQEHAWCLAIEKLTGTVVPRRGQLIRVLYSEIGRVLNHLLNVTTQAMD 141
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTPPLWGFEEREKLM+FYERA G+R+HAAYFRPGGVHQD+P +L++DI W FP
Sbjct: 142 VGALTPPLWGFEEREKLMIFYERACGARLHAAYFRPGGVHQDLPDDLLDDIDLWAMEFPK 201
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+DI LLT NRIFKQRN +IG V +D +GFSGVM+RGSG AWDLR++QPYECY E
Sbjct: 202 VLDDIDGLLTENRIFKQRNCDIGVVTEDDIQKYGFSGVMVRGSGLAWDLRRAQPYECYDE 261
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+F +PIGK+GDCYDRYL RM EMR+S IIRQ + +L + K+ PPKR
Sbjct: 262 FEFQVPIGKNGDCYDRYLCRMEEMRQSTSIIRQAIAKLREATGDV---MARGKLSPPKRG 318
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
DMK SMESLIHHFKLYTEG+HVP GEVYAAVEAPKGEFGVYL++DG NKPYR KIRAPG+
Sbjct: 319 DMKTSMESLIHHFKLYTEGFHVPAGEVYAAVEAPKGEFGVYLVADGSNKPYRSKIRAPGF 378
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQAM+ + KGHQLADV+AI+G++D+VFGE+DR
Sbjct: 379 LHLQAMDHVAKGHQLADVAAIIGTMDVVFGEIDR 412
>gi|71906591|ref|YP_284178.1| NADH dehydrogenase subunit D [Dechloromonas aromatica RCB]
gi|123627977|sp|Q47HH3|NUOD_DECAR RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|71846212|gb|AAZ45708.1| NADH dehydrogenase subunit D [Dechloromonas aromatica RCB]
Length = 417
Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats.
Identities = 236/418 (56%), Positives = 299/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
R+FT+NFGPQHPAAHGVLRL+LELDGE+V+R DPHIGLLHR TEKL ET+T++Q+VP
Sbjct: 2 ADIRNFTLNFGPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRATEKLAETRTWVQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY LA EKLLGIE+P RG+ IRV++ E+ RIL+HLL + A+DV
Sbjct: 62 YMDRLDYVSMMCNEHAYCLATEKLLGIEVPERGKYIRVMFDEVTRILNHLLWIGCHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+T L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMTMALYTFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDRMPQYQESTWTNAKKA 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ + + + FP+ ++ LLT NRI+KQR VN+G V E A GF+
Sbjct: 182 AEKNENRSGSVLDFLEDFTNRFPTYHSEYHTLLTDNRIWKQRLVNVGVVTPERALQMGFT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG AWDLRK QPY Y +++FD+P+G +GD YDRYLVRM EM +S II+QC+
Sbjct: 242 GAMLRGSGIAWDLRKKQPYAAYDKINFDVPVGVNGDSYDRYLVRMEEMIQSNNIIKQCIA 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ PP R +MK +ME LIHHFKL+TEG HVP GE YAAVE PKG
Sbjct: 302 WL--RKNPGPVITDNNKVAPPPRENMKTNMEELIHHFKLFTEGIHVPAGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+Y +SDG NKPYR KIRAPG+ HL ++ + +GH +ADV I+GS DIVFGE+DR
Sbjct: 360 EFGIYFVSDGANKPYRMKIRAPGFVHLAGLDEMSRGHMIADVVTIIGSQDIVFGEIDR 417
>gi|291280354|ref|YP_003497189.1| NADH-quinone oxidoreductase subunit D [Deferribacter desulfuricans
SSM1]
gi|290755056|dbj|BAI81433.1| NADH-quinone oxidoreductase, D subunit [Deferribacter desulfuricans
SSM1]
Length = 402
Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats.
Identities = 176/391 (45%), Positives = 254/391 (64%), Gaps = 4/391 (1%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
T+N GPQHP+ HGVLRL+++LDGE + V P IG LHRG EKL E +T+ Q +P
Sbjct: 16 GEVITVNMGPQHPSTHGVLRLVVDLDGETIVDVRPDIGFLHRGVEKLAENRTYHQFIPLT 75
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DRLDY++P++ AY LAVEK ++IP R + +RV+++E+ R+ SHL+ + T A+D+GA
Sbjct: 76 DRLDYLSPLSNNLAYCLAVEKFFDVKIPERAEYLRVIFAELARLASHLVWIATHALDIGA 135
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+T L+ F ERE ++ +E A+G RM +++ R GG+ D+PPE + + + + F ++
Sbjct: 136 MTVFLYAFREREMILDMFEIATGQRMTSSWIRIGGIRDDVPPEFFDRLREFIEIFEERVD 195
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
LLT NRI+ +R +G + EDA +G SG ++RGSG +DLRK++PY Y DF
Sbjct: 196 TYERLLTKNRIWLKRTKGVGYLSPEDAQDYGVSGPIMRGSGIPFDLRKAEPYSIYDRFDF 255
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
++ D Y RY VRM EMRES KI+ Q + ++ GPV DP+I P ++
Sbjct: 256 EVACFDGCDIYSRYQVRMKEMRESRKILEQALEQI----PEGPVMTDDPRIGFPSHEEVY 311
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
ME+LI F L ++G+ P GE YA VEAPKGE G Y++SDG KPYR KIRA + +L
Sbjct: 312 EKMEALIRRFYLISKGFKTPKGETYACVEAPKGELGFYIVSDGKEKPYRLKIRAASFVNL 371
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A+ + KG+ +AD+ I+GS+DIV GE+DR
Sbjct: 372 GALPAMSKGYMIADLVGIIGSIDIVLGEIDR 402
>gi|39995450|ref|NP_951401.1| NADH dehydrogenase I subunit D [Geobacter sulfurreducens PCA]
gi|81703475|sp|Q74GA5|NUOD_GEOSL RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|39982213|gb|AAR33674.1| NADH dehydrogenase I, D subunit [Geobacter sulfurreducens PCA]
gi|307634688|gb|ADI83172.2| NADH dehydrogenase I, D subunit [Geobacter sulfurreducens KN400]
Length = 390
Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats.
Identities = 191/391 (48%), Positives = 268/391 (68%), Gaps = 4/391 (1%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ T+N GPQHP+ HGVLR+++ELDGE+++++ PHIG LHRG EKL E +T+ Q +P
Sbjct: 4 TEIMTVNMGPQHPSTHGVLRMVIELDGEVIQKITPHIGYLHRGVEKLSEHRTYHQTIPLT 63
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DRLDY+APM+ Y LAVEKLLGIEIP R Q IRV+ +E+ R+ SHL+ + A+D+GA
Sbjct: 64 DRLDYLAPMSNNLGYVLAVEKLLGIEIPERAQTIRVIMAELTRLKSHLVWIACHALDIGA 123
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+T ++ F ERE +M YE+ SG+RM + YFR GG+ D+ +D+ D+FP +
Sbjct: 124 MTVFIYAFREREMIMSLYEKISGARMTSNYFRVGGLSSDVYDGFEKDVREVIDTFPGHFD 183
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
LLT N I+ R V G + EDA +G +G +RGSG WDLR+ PY Y + F
Sbjct: 184 TYEGLLTKNTIWVNRTVGNGVISAEDAVDYGITGPALRGSGVDWDLRRDNPYSGYEKYSF 243
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+P+G+ D +DRY VR++EMRE+V IIRQ ++ K GPV A +P++ P + ++
Sbjct: 244 KVPVGEKCDTFDRYKVRLIEMREAVNIIRQALD----SLKPGPVLADNPQVTYPPKENVY 299
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
S+E LIHHFK+ +EG+ VP GEVY +VEAPKGE G Y++SDGG KPYR +IR P + +L
Sbjct: 300 NSIEGLIHHFKIASEGFPVPEGEVYQSVEAPKGELGYYIVSDGGPKPYRMRIRPPSFVNL 359
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A+E + KG +AD+ A++G+LDIV GE+DR
Sbjct: 360 GAIEKMAKGSMIADLVAVIGTLDIVLGEIDR 390
>gi|291613541|ref|YP_003523698.1| NADH dehydrogenase I, D subunit [Sideroxydans lithotrophicus ES-1]
gi|291583653|gb|ADE11311.1| NADH dehydrogenase I, D subunit [Sideroxydans lithotrophicus ES-1]
Length = 417
Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats.
Identities = 237/418 (56%), Positives = 301/418 (72%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+++T+NFGPQHPAAHGVLRL+LELDGE++ER DPH+GLLHR TEKL E KTFLQAVP
Sbjct: 2 ADIKNYTMNFGPQHPAAHGVLRLVLELDGEVIERADPHVGLLHRATEKLAEHKTFLQAVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY +A+EKL GIE+PIR Q IRV+Y EI RIL+HLL + +D+
Sbjct: 62 YMDRLDYVSMMLNEHAYVMAIEKLAGIEVPIRAQYIRVMYDEITRILNHLLWLGASGIDL 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+T + F ERE L+ YE SG+R+HAAY+RPGGV++D+P +
Sbjct: 122 GAMTMFFYTFREREDLLDAYEAVSGARLHAAYYRPGGVYRDLPDSMPQYEVSKIHNAAAV 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ + + + FP +++ LLT NRI+KQR V IG V E A GF+
Sbjct: 182 KKKNENRQGSLLDFLEDFTNRFPGYVDEYETLLTDNRIWKQRTVGIGVVSPERALAMGFT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG WDLRK QPYE Y LDFDIP+G GDCYDRYLVR+ EMR+S +II+QC++
Sbjct: 242 GPMLRGSGVVWDLRKKQPYEVYDRLDFDIPVGVEGDCYDRYLVRVEEMRQSNRIIKQCID 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV D K PP+R MK++ME LIHHFKL+TEG+HVP GEVY+AVE KG
Sbjct: 302 WL--RKNPGPVMTDDLKYAPPQRESMKQNMEELIHHFKLFTEGFHVPAGEVYSAVEHAKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YL+SDG NKPYR KIRA G+AHL +++ + +GH +ADV AI+G+ DIVFGE+DR
Sbjct: 360 EFGIYLVSDGANKPYRMKIRAAGFAHLASLDEMVRGHMIADVVAIIGTQDIVFGEIDR 417
>gi|332185669|ref|ZP_08387416.1| NADH dehydrogenase (quinone), D subunit [Sphingomonas sp. S17]
gi|332014027|gb|EGI56085.1| NADH dehydrogenase (quinone), D subunit [Sphingomonas sp. S17]
Length = 390
Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats.
Identities = 258/392 (65%), Positives = 315/392 (80%), Gaps = 5/392 (1%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+++TINFGPQHPAAHGVLRL++ELDGEIVERVDPH+GLLHRGTEKLIE KT+ QA+PYF
Sbjct: 3 IQNYTINFGPQHPAAHGVLRLVMELDGEIVERVDPHVGLLHRGTEKLIEYKTYAQALPYF 62
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DRLDY +PM EH+Y LAVEKLL +E+P+R Q +R ++E+ RI +H+LN+ + MDVGA
Sbjct: 63 DRLDYCSPMCMEHSYVLAVEKLLDLEVPLRAQYLRTFFAELTRISNHMLNLGSHVMDVGA 122
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD-SFPSAL 184
+TP LW FE RE M FYERASG+RMHA YFR GGVHQD+P +L+ DI W D P
Sbjct: 123 MTPNLWMFEIREDCMNFYERASGARMHANYFRVGGVHQDVPLKLLTDIADWLDTRLPQLF 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
D L++ NRIFKQRNV+I V EDA WGFSG MIRGSG WDLRKSQPY+ Y ++D
Sbjct: 183 EDAIGLVSNNRIFKQRNVDIAVVNREDAIKWGFSGPMIRGSGIPWDLRKSQPYDAYDKVD 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FD+P+G GDCYDR++VR+ E+R+S +I++QC+ ++ GPV A+D K+ PPKRA+M
Sbjct: 243 FDVPVGTSGDCYDRFMVRVEEVRQSARIMKQCLAQM----PEGPVLATDRKVTPPKRAEM 298
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
KRSME+LIHHFKLYTEGYHVP GEVY A E+PKGEFGVYL+SDG NKPYRCKIR ++H
Sbjct: 299 KRSMEALIHHFKLYTEGYHVPAGEVYVATESPKGEFGVYLVSDGSNKPYRCKIRPTAFSH 358
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
LQAMEF+ KGH LAD +AILG++DIVFGE DR
Sbjct: 359 LQAMEFMSKGHMLADTTAILGAMDIVFGECDR 390
>gi|50556238|ref|XP_505527.1| YALI0F17248p [Yarrowia lipolytica]
gi|6689652|emb|CAB65521.1| NUCM protein [Yarrowia lipolytica]
gi|49651397|emb|CAG78336.1| YALI0F17248p [Yarrowia lipolytica]
Length = 466
Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats.
Identities = 242/393 (61%), Positives = 303/393 (77%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ R+FTINFGPQHPAAHGVLRLILEL GE + R DPH+GLLHRGTEKLIE KT++QA+P
Sbjct: 78 TRIRAFTINFGPQHPAAHGVLRLILELSGEEIIRSDPHVGLLHRGTEKLIEYKTYMQALP 137
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M E ++LAVEKLL +E+P+RG+ IR ++ EI R+L+HL++V + AMDV
Sbjct: 138 YFDRLDYVSMMTNEQVFSLAVEKLLNVEVPLRGKYIRTMFGEITRVLNHLMSVCSHAMDV 197
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP LWGFEEREKLM FYER SG+R+HAAY RPGGV QD+P L++DI W F
Sbjct: 198 GALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDLPAGLLDDIYMWATQFGDR 257
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L++I +LLT NRI+K R VNIGTV +DA G SG M+RGSG +D+RK+ PY+ Y ++
Sbjct: 258 LDEIEELLTDNRIWKLRTVNIGTVTAQDALNLGLSGPMLRGSGIPFDIRKNAPYDAYDKV 317
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DFD+P+G +GDCYDRYL+RM E R+S++II QC N + G V D KI P R
Sbjct: 318 DFDVPVGMNGDCYDRYLIRMAEFRQSLRIIEQCCNDMPA----GAVKVEDFKINSPPRNL 373
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK ME+LIHHF LYT+GY VP GE Y A+EAPKGE GVY++SDG +PY+CKIRAPG+A
Sbjct: 374 MKEDMEALIHHFLLYTKGYSVPPGETYTAIEAPKGEMGVYVVSDGSERPYKCKIRAPGFA 433
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HL A + + +GH L D AI+G++D+VFGEVDR
Sbjct: 434 HLGAFDHIARGHFLPDAVAIIGTMDLVFGEVDR 466
>gi|148244392|ref|YP_001219086.1| NADH dehydrogenase subunit D [Candidatus Vesicomyosocius okutanii
HA]
gi|229891305|sp|A5CXG0|NUOD_VESOH RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|146326219|dbj|BAF61362.1| NADH dehydrogenase I chain D [Candidatus Vesicomyosocius okutanii
HA]
Length = 417
Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats.
Identities = 234/418 (55%), Positives = 297/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ R++T+NFGPQHPAAHGVLRLILE+DGE++ER DPHIGLLHRGTEKL+E+K + Q++
Sbjct: 2 SEIRNYTLNFGPQHPAAHGVLRLILEIDGEVIERADPHIGLLHRGTEKLVESKPYNQSIG 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY +A+E +L +++P R Q IRV++ EI RIL+HL+ + T +DV
Sbjct: 62 YMDRLDYVSMMCNEHAYVMAIEAMLNLKVPKRAQYIRVMFDEITRILNHLMWLGTHGLDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA++ L+ F EREKL+ YE SGSRMHA Y+RPGGV++D+P ++
Sbjct: 122 GAMSIFLYAFREREKLIDCYEAVSGSRMHATYYRPGGVYRDLPDKMPQYLASDFRTSKEL 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP ++ DLLT NRI+KQR VNIG V A GF+
Sbjct: 182 ETMNENRQGSLLDFIADFVKEFPKSIKQYDDLLTDNRIWKQRLVNIGVVSANRAKQLGFT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG WDLRK+QPY Y +L FDIP+G GD YDRYLVRM EMR+S II+QCV
Sbjct: 242 GPMLRGSGVEWDLRKNQPYAVYDQLKFDIPVGMTGDSYDRYLVRMEEMRQSNYIIKQCVK 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + G V + D K+ PKR +MK MESLIHHFKL+TEGY +P GEVY AVE PKG
Sbjct: 302 WL--RENPGAVMSDDHKVSQPKRTNMKNDMESLIHHFKLFTEGYCLPEGEVYRAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFGVYLISDG NKPYR KIRAPG++HL AM + +GH L+DV I+G+ D+VFGE+DR
Sbjct: 360 EFGVYLISDGANKPYRVKIRAPGFSHLAAMNEMTRGHMLSDVVTIIGTQDVVFGEIDR 417
>gi|187929290|ref|YP_001899777.1| NADH dehydrogenase subunit D [Ralstonia pickettii 12J]
gi|229891298|sp|B2U7Q8|NUOD_RALPJ RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|187726180|gb|ACD27345.1| NADH dehydrogenase I, D subunit [Ralstonia pickettii 12J]
Length = 417
Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats.
Identities = 234/418 (55%), Positives = 299/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E KT++Q+VP
Sbjct: 2 ADIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTWIQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY +A+E+LLG+E+P+R Q IRV++ EI RI++HL+ + + A+DV
Sbjct: 62 YMDRLDYVSMMVNEHAYVMAIERLLGLEVPLRAQYIRVMFDEITRIMNHLMWIGSHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE L YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMAVFLYAFREREDLFDMYEAVSGARMHAAYYRPGGVYRDLPDTMPQYKASKVRNEKAL 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + + FP +++ LLT NRI+KQR V IG V E A GFS
Sbjct: 182 AALNQTRSGSLLDFIEDFTNRFPKYVDEYETLLTDNRIWKQRLVGIGVVSPERALNKGFS 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG WD+RK QPYE Y +DFDIP+G +GDCYDRYLVR+ EMR+S +IIRQC+
Sbjct: 242 GAMLRGSGIEWDVRKKQPYEVYDRIDFDIPVGVNGDCYDRYLVRVEEMRQSNRIIRQCIE 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ PP R DMK +ME LIHHFKL+TEG HVP GE YAAVE PKG
Sbjct: 302 WL--RKNPGPVITDNHKVAPPSRVDMKTNMEELIHHFKLFTEGMHVPEGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+Y ISDG NKPYR KIRAPG+ HL A++ + KGH +AD I+G+ DIVFGE+DR
Sbjct: 360 EFGIYAISDGANKPYRLKIRAPGFVHLAALDEMAKGHMIADAVTIIGTQDIVFGEIDR 417
>gi|322421847|ref|YP_004201070.1| NADH dehydrogenase I subunit D [Geobacter sp. M18]
gi|320128234|gb|ADW15794.1| NADH dehydrogenase I, D subunit [Geobacter sp. M18]
Length = 389
Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats.
Identities = 192/391 (49%), Positives = 270/391 (69%), Gaps = 4/391 (1%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
S T+N GPQHP+ HGVLRL++ELDGE+++++ PHIG LHRG EKL E +T+ Q +P
Sbjct: 3 SEIMTLNMGPQHPSTHGVLRLVVELDGEVIQKITPHIGYLHRGIEKLSEHRTYHQTLPLT 62
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DR+DY+APM+ Y L VEKLLG+E+P R +++RV+ +E+ R+ SHL+ + A+D+GA
Sbjct: 63 DRMDYLAPMHNNLGYVLGVEKLLGLEVPERAKVVRVMMAELTRLKSHLVWIACHALDIGA 122
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+T L+ F EREK+M YE SG+RM + YFR GG+ +++P + D+FP +
Sbjct: 123 MTVFLYAFREREKVMDLYEAVSGARMTSNYFRVGGLSRELPAGFEAAVQEIVDTFPGHFD 182
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
LLT N I+ QR + G + EDA +G SG +RGSG +DLR+ PY Y + DF
Sbjct: 183 TYEGLLTKNTIWLQRTIGNGVISAEDAIDYGISGPALRGSGVDFDLRRDLPYSGYEDYDF 242
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+P+G++ D +DRY VR++EMRESVKII Q + +L K GP+ A P++ P + +
Sbjct: 243 KVPVGENCDTFDRYKVRLVEMRESVKIIDQALKKL----KPGPILADAPQVCYPPKESVY 298
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
S+E LIHHFK+ +EG+ VP GEVY AVE PKGE G YL+SDGGNKPYR ++R P + +L
Sbjct: 299 NSIEGLIHHFKIASEGFPVPEGEVYMAVENPKGELGYYLVSDGGNKPYRMRVRPPSFVNL 358
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A+E + KG LAD+ A++G+LDIV GE+DR
Sbjct: 359 SAIEKMAKGSMLADLVAVIGTLDIVLGEIDR 389
>gi|298246353|ref|ZP_06970159.1| NADH dehydrogenase I, D subunit [Ktedonobacter racemifer DSM 44963]
gi|297553834|gb|EFH87699.1| NADH dehydrogenase I, D subunit [Ktedonobacter racemifer DSM 44963]
Length = 418
Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats.
Identities = 186/397 (46%), Positives = 258/397 (64%), Gaps = 6/397 (1%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ +++ + TIN GPQHP+ HGVLRL+L ++GE V + P IG LH G EK E K++ QA
Sbjct: 26 EGQRNDTMTINMGPQHPSTHGVLRLVLTIEGETVIKAVPDIGFLHTGIEKTAEVKSYHQA 85
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+DY+AP+N Y+LAVE+LLGI EI + + RV+ +E+ RI SHL+ + T
Sbjct: 86 LVLTDRMDYLAPLNNNLGYSLAVERLLGIDDEINDKIKYTRVILAELQRIASHLVWLGTS 145
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
A+D+GA + L+ F ERE ++ +E SG RM +Y PGG+ ++P + + +
Sbjct: 146 ALDLGAQSVFLYCFREREMILDIFELISGVRMMTSYICPGGLQAELPKGFEAKVREFLKA 205
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
FP L + DLL+ N+++ +R NIG + EDA +G SG +RGSG WD+RK PY
Sbjct: 206 FPPRLQEYHDLLSNNQLWLERTRNIGILTQEDALAYGASGPTLRGSGVVWDIRKVFPYSG 265
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + DFDIP+G GD YDRY+VRM+EM ES KII Q + L GP + K+ PP
Sbjct: 266 YEKFDFDIPVGSTGDVYDRYMVRMLEMEESRKIIEQALEGL----PEGPYRVQNKKVTPP 321
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
+ + SME+LIHHFKL+TEGY P GEV+ EAPKGE G Y++SDGG KPYR +R
Sbjct: 322 PKWQITGSMEALIHHFKLFTEGYRPPQGEVFVRTEAPKGELGFYMVSDGGPKPYRMHVRG 381
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+A+LQ + + +G L+DV A +GS+DIV GEVDR
Sbjct: 382 ASFANLQVLPRMVEGTFLSDVVAAIGSIDIVLGEVDR 418
>gi|156741306|ref|YP_001431435.1| NADH dehydrogenase I subunit D [Roseiflexus castenholzii DSM 13941]
gi|218534358|sp|A7NIV9|NUOD1_ROSCS RecName: Full=NADH-quinone oxidoreductase subunit D 1; AltName:
Full=NADH dehydrogenase I subunit D 1; AltName:
Full=NDH-1 subunit D 1
gi|156232634|gb|ABU57417.1| NADH dehydrogenase I, D subunit [Roseiflexus castenholzii DSM
13941]
Length = 417
Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats.
Identities = 184/390 (47%), Positives = 253/390 (64%), Gaps = 1/390 (0%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+ +N GP HP+ HGVLRL++ELDGE V V P IG LH G EK +E+KT+ +AV D
Sbjct: 29 ETMVLNMGPHHPSTHGVLRLVVELDGETVVDVAPDIGYLHTGIEKTMESKTYQKAVVLTD 88
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R DY+AP++ +Y LAVEKLLG E+P R + RVL E+ RI SHL+ + T A+D+ A+
Sbjct: 89 RTDYLAPLSNNLSYVLAVEKLLGCEVPERATVARVLLVELQRIASHLVWLGTHALDLAAM 148
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
+ L+GF ERE+++ +E SG+RM +YFR GG+ D+P E + + P +++
Sbjct: 149 SVFLYGFREREQILDIFELVSGARMMTSYFRVGGLAYDLPIEFDAAVEAFLAIMPGRIDE 208
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
LLT N ++ +R IG + E A G +G +R +G AWDLRK+ PY Y F
Sbjct: 209 YEALLTDNPLWIERTQGIGAIDSEAAIALGLTGPGLRATGVAWDLRKTMPYCGYETYSFA 268
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+P HGD YDRYLVRM EMRESV I RQ + RL GP D KI PP ++++ +
Sbjct: 269 VPTATHGDIYDRYLVRMAEMRESVSICRQALQRLRDIGP-GPYMTLDRKIAPPPKSEITQ 327
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
SME+LIHHFKL+TEG+ P G+ AAVE+P+GE Y++SDG KPYR RAP + +LQ
Sbjct: 328 SMEALIHHFKLWTEGFKPPRGDALAAVESPRGELATYIVSDGSAKPYRVHFRAPSFVNLQ 387
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ + +GH +AD+ A++ SLD V GEVDR
Sbjct: 388 SLPHMARGHLVADLVALIASLDPVLGEVDR 417
>gi|33597908|ref|NP_885551.1| NADH dehydrogenase subunit D [Bordetella parapertussis 12822]
gi|33602813|ref|NP_890373.1| NADH dehydrogenase subunit D [Bordetella bronchiseptica RB50]
gi|81426434|sp|Q7W5B0|NUOD_BORPA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|81429889|sp|Q7WCU2|NUOD_BORBR RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|33574337|emb|CAE38673.1| respiratory-chain NADH dehydrogenase, 49 kDa subunit [Bordetella
parapertussis]
gi|33577255|emb|CAE35812.1| respiratory-chain NADH dehydrogenase, 49 kDa subunit [Bordetella
bronchiseptica RB50]
Length = 418
Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats.
Identities = 238/419 (56%), Positives = 307/419 (73%), Gaps = 28/419 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E KTF+QA+P
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEHKTFIQALP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY +A+EKLLGIE P+R Q IRV++ EI R+L+HL+++ + A+DV
Sbjct: 62 YMDRLDYVSMMCNEHAYVMAIEKLLGIEAPLRAQYIRVMFDEITRVLNHLMSLGSHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMAVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDTMPQYGDSSKYRGEKE 181
Query: 170 ------------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF 217
++ I + + FP +++ LLT NRI+KQR V IG V + A GF
Sbjct: 182 VRAMNDARSGSLLDFIEDFTNRFPGCVDEYETLLTDNRIWKQRLVGIGVVDPDRAKALGF 241
Query: 218 SGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCV 277
+G M+RGSG AWDLRK+QPYE Y +DFD+P+G +GDCYDRYLVR+ EMRES +IIRQCV
Sbjct: 242 TGPMLRGSGVAWDLRKTQPYEVYDLMDFDVPVGVNGDCYDRYLVRVAEMRESNRIIRQCV 301
Query: 278 NRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPK 337
L +N GPV + KI PP R MK +ME LIHHFKL++EG+HVP GE YAAVE PK
Sbjct: 302 EWL--RNNPGPVMIENHKIAPPSRTAMKSNMEELIHHFKLFSEGFHVPPGEAYAAVEHPK 359
Query: 338 GEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GEFG+YL++DG NKPYR KIRAPG+AHLQ+++ + +GH +AD I+G+ DIVFGE+DR
Sbjct: 360 GEFGIYLVADGANKPYRLKIRAPGFAHLQSLDEMARGHMIADAVTIIGTQDIVFGEIDR 418
>gi|330994057|ref|ZP_08317987.1| NADH-quinone oxidoreductase subunit D [Gluconacetobacter sp.
SXCC-1]
gi|329759003|gb|EGG75517.1| NADH-quinone oxidoreductase subunit D [Gluconacetobacter sp.
SXCC-1]
Length = 418
Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats.
Identities = 242/392 (61%), Positives = 305/392 (77%), Gaps = 4/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ S +NFGPQHP+AHGVLRL+LE++GE+V R PH+GLLHRGTEKLIE KT+ +A+PY
Sbjct: 31 EIDSHALNFGPQHPSAHGVLRLVLEMEGEVVARAIPHVGLLHRGTEKLIEYKTYPKALPY 90
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
FDRLDYV+PM +E A+ALAVEKLLGIE P R + IRV+++EI RIL+H+LN+T+ +D G
Sbjct: 91 FDRLDYVSPMCEEQAFALAVEKLLGIEAPERAKWIRVMFAEITRILNHILNLTSFGLDCG 150
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
ALTP LWG+EEREKL+ FYE ASG+R HA Y RPGGV QD+P L + I W +FP +
Sbjct: 151 ALTPALWGYEEREKLIEFYEAASGARFHANYVRPGGVAQDLPAGLEDRIADWARTFPQWI 210
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+D+ LLTGNRI+KQR V IG E A WGFSG +R SG WDLR+SQPY+ Y +++
Sbjct: 211 DDLEALLTGNRIWKQRTVGIGVFTTEQALAWGFSGPCLRASGVPWDLRRSQPYDNYDKVE 270
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F++P+G+ GDCYDRYL+R+ EMRESVKII QC+ ++ GPV D KI PP R +M
Sbjct: 271 FNVPVGRQGDCYDRYLIRVAEMRESVKIINQCLEQIR----PGPVKVQDHKITPPPRREM 326
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
KRSME+LIHHFKL+TEGYHVP G Y E PKGEFGVYL++DG N+PYRCKIR G++H
Sbjct: 327 KRSMEALIHHFKLFTEGYHVPPGATYTVTETPKGEFGVYLVADGSNRPYRCKIRPTGFSH 386
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
LQA++ + + H LAD AI+GSLD+VFGE+DR
Sbjct: 387 LQAIDEMSRRHMLADAVAIIGSLDLVFGEIDR 418
>gi|299530745|ref|ZP_07044160.1| NADH dehydrogenase subunit D [Comamonas testosteroni S44]
gi|298721261|gb|EFI62203.1| NADH dehydrogenase subunit D [Comamonas testosteroni S44]
Length = 417
Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats.
Identities = 235/418 (56%), Positives = 298/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++++NFGPQHPAAHGVLRL+LELDGE+V+R DPHIGLLHR TEKL E+KT++Q++P
Sbjct: 2 AEIKNYSLNFGPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRATEKLAESKTYIQSLP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDY + M+ EHAY LA+EKL+GIE+PIR Q IRV++SEI RI++HL+ + + D
Sbjct: 62 YMDRLDYCSMMSNEHAYCLAIEKLMGIEVPIRAQYIRVMFSEITRIMNHLMWLGSSGNDA 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
G+ T ++ F ERE LM YE SG+RMHAAYFRPGGV++D+P +
Sbjct: 122 GSSTILIYSFREREALMDMYEAVSGARMHAAYFRPGGVYRDLPDSMPQYKASKVRNVRSM 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP ++ LLT NRI+KQRNV IG V E A G +
Sbjct: 182 EAMNEDRKGSLLDFIDAFTQRFPKCADEYETLLTDNRIWKQRNVGIGVVSAERAINLGLT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+R SG WD+RK+QPYE Y +LDFDIP+G GDCYDRYLVRM EMRES KII+QCV+
Sbjct: 242 GPMLRASGMPWDMRKTQPYEVYDKLDFDIPVGATGDCYDRYLVRMAEMRESNKIIKQCVD 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ P R MK SME LIHHFKL+TEG+ VP GE YA+VE PKG
Sbjct: 302 WL--RVNPGPVITDNHKVAPASREAMKSSMEELIHHFKLFTEGFKVPEGEAYASVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YLISDG NKPYR KIR PG+AH+ A++ L +GH LAD +L +LDIVFG+VDR
Sbjct: 360 EFGIYLISDGANKPYRLKIRPPGFAHMAALDELSRGHMLADAVMVLSTLDIVFGDVDR 417
>gi|84508548|ref|YP_448713.1| NADH dehydrogenase subunit 7 [Dictyota dichotoma]
gi|45925716|gb|AAS79097.1| NADH dehydrogenase subunit 7 [Dictyota dichotoma]
Length = 398
Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats.
Identities = 253/388 (65%), Positives = 308/388 (79%), Gaps = 4/388 (1%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
FTINFGPQHPAAHGVLRLILEL+GE+V+R DPHIGLLHRGTEKLIE+KT+LQA+PYFDRL
Sbjct: 15 FTINFGPQHPAAHGVLRLILELNGEVVQRADPHIGLLHRGTEKLIESKTYLQALPYFDRL 74
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
DYV+ M QEH YALAVE LL + IP R Q IRV+++EI RIL+HLL V AMDVGA+TP
Sbjct: 75 DYVSMMCQEHTYALAVENLLNVSIPRRAQYIRVIFAEITRILNHLLAVGCHAMDVGAMTP 134
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
LW FEEREKLM FYER SG+RMHA+YFRPGGV QD+ ++ DI +C+ F L++I
Sbjct: 135 FLWAFEEREKLMEFYERVSGARMHASYFRPGGVSQDLSLGILNDIYSFCNQFGHRLDEIE 194
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
++LT N I+K R V+IG V +A WGFSGVM+RGSG WDLRK+QPYE Y E+ FDIP
Sbjct: 195 EMLTSNPIWKLRLVDIGVVTAREAVDWGFSGVMLRGSGLIWDLRKNQPYEVYPEIKFDIP 254
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
+G +GDC+DRY +R+ EMR+S+ I+ QC+N++ G V D KI PP R ++K++M
Sbjct: 255 VGVNGDCFDRYTIRIQEMRQSLNILYQCLNKM----PQGSVKVDDYKISPPSRVELKQNM 310
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
E+LIHHFKLYTEG VPVGE Y A EAPKGEFGVYLIS+G N+PYRCKI+APG++HLQA+
Sbjct: 311 EALIHHFKLYTEGVLVPVGETYIATEAPKGEFGVYLISNGTNRPYRCKIKAPGFSHLQAL 370
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ H LADV I+G+ DIVFGEVDR
Sbjct: 371 NLMSSSHMLADVVTIIGTQDIVFGEVDR 398
>gi|264677201|ref|YP_003277107.1| NADH dehydrogenase I, D subunit [Comamonas testosteroni CNB-2]
gi|262207713|gb|ACY31811.1| NADH dehydrogenase I, D subunit [Comamonas testosteroni CNB-2]
Length = 417
Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats.
Identities = 234/418 (55%), Positives = 298/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++++NFGPQHPAAHGVLRL+LELDGE+V+R DPHIGLLHR TEKL E+KT++Q++P
Sbjct: 2 AEIKNYSLNFGPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRATEKLAESKTYIQSLP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDY + M+ EHAY LA+EKL+GIE+PIR Q IRV++SEI RI++HL+ + + D
Sbjct: 62 YMDRLDYCSMMSNEHAYCLAIEKLMGIEVPIRAQYIRVMFSEITRIMNHLMWLGSSGNDA 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
G+ T ++ F ERE LM YE SG+RMHAAYFRPGGV++D+P +
Sbjct: 122 GSSTILIYSFREREALMDMYEAVSGARMHAAYFRPGGVYRDLPDSMPQYKASKVRNVRSM 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP ++ LLT NRI+KQRNV IG V E A G +
Sbjct: 182 EAMNEDRKGSLLDFIDAFTQRFPKCADEYETLLTDNRIWKQRNVGIGVVSAERAINLGLT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+R SG WD+RK+QPYE Y +LDFDIP+G GDCYDRYLVRM EMRES KII+QCV+
Sbjct: 242 GPMLRASGLPWDMRKTQPYEVYDKLDFDIPVGATGDCYDRYLVRMAEMRESNKIIKQCVD 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ P R MK +ME LIHHFKL+TEG+ VP GE YA+VE PKG
Sbjct: 302 WL--RVNPGPVITDNHKVAPASREAMKSNMEELIHHFKLFTEGFKVPEGEAYASVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YLISDG NKPYR KIR PG+AH+ A++ L +GH LAD +L +LDIVFG+VDR
Sbjct: 360 EFGIYLISDGANKPYRLKIRPPGFAHMAALDELSRGHMLADAVMVLSTLDIVFGDVDR 417
>gi|307730337|ref|YP_003907561.1| NADH dehydrogenase I subunit D [Burkholderia sp. CCGE1003]
gi|307584872|gb|ADN58270.1| NADH dehydrogenase I, D subunit [Burkholderia sp. CCGE1003]
Length = 417
Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats.
Identities = 239/418 (57%), Positives = 302/418 (72%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL ETKTF+Q+VP
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAETKTFIQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EH Y +A+EKLLGIE+P+R Q IRV++ EI R+L+HL+ + A+DV
Sbjct: 62 YMDRLDYVSMMVNEHGYVMAIEKLLGIEVPVRAQYIRVMFDEITRVLNHLMWIGAHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNAKAL 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP+ +++ LLT NRI+KQR V IG V E A G S
Sbjct: 182 SKMNENRQGSLLDFIDDFFTRFPTYVDEYETLLTDNRIWKQRLVGIGVVSPERALQLGMS 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG WDLRK QPYE Y +LDFDIP+G +GDCYDRYLVR+ EMR+S +I++QCV
Sbjct: 242 GAMLRGSGIEWDLRKKQPYEVYEKLDFDIPVGVNGDCYDRYLVRVEEMRQSTRIVKQCVE 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ PP R MK +ME LIHHFKL+TEG+HVP GE YAAVE PKG
Sbjct: 302 WL--RKNPGPVMIDNHKVAPPSRVGMKSNMEELIHHFKLFTEGFHVPEGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YL+SDG NKPYR KIRAPGYAHL A++ + +GH +AD I+G+ DIVFGEVDR
Sbjct: 360 EFGIYLVSDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEVDR 417
>gi|219847963|ref|YP_002462396.1| NADH dehydrogenase I subunit D [Chloroflexus aggregans DSM 9485]
gi|219542222|gb|ACL23960.1| NADH dehydrogenase I, D subunit [Chloroflexus aggregans DSM 9485]
Length = 411
Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats.
Identities = 182/392 (46%), Positives = 265/392 (67%), Gaps = 1/392 (0%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ + +N GP HP+ HGVLRL+LELDGE+V V P +G LH G EK +E+KT+ +AV
Sbjct: 21 RTETMVLNMGPHHPSTHGVLRLVLELDGEVVVNVAPDVGYLHTGIEKTMESKTYQKAVVL 80
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY+AP++ YALAVEKLLGIEIP R Q+ RVL +E+ RI SHL+ + T A+D+
Sbjct: 81 TDRMDYLAPLSNNLCYALAVEKLLGIEIPERAQIARVLLTELQRIASHLVWLGTHALDLA 140
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++ L+ F ERE+++ +E SG+RM +YFR GG+ D+P + + + + PS +
Sbjct: 141 AMSVFLYAFREREQILDIFELVSGARMMTSYFRIGGLAYDLPADFIPTVEQFLAIMPSRI 200
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
++ DLLT N ++ +R V +G + + A G +G +R +G A+D+RK+ PY Y
Sbjct: 201 DEYEDLLTANPLWLERTVGVGVIDAQSAIALGLTGANLRATGVAYDVRKAMPYSGYETYS 260
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F+IP+GK+GD YDRY VR+ EMR+SVKI++Q RL GPV D K+ PP + ++
Sbjct: 261 FEIPVGKNGDIYDRYRVRVAEMRQSVKIVQQATERLRELGP-GPVITPDRKVAPPPKREI 319
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
SMESLIHHFKL+TEG+ P G+ Y ++E+P+G G Y++SDG KP+R RAP + +
Sbjct: 320 TESMESLIHHFKLWTEGFKPPRGDAYVSIESPRGILGCYVVSDGSPKPWRVHFRAPSFIN 379
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
LQ++ + KG +AD+ A++ SLD V GEVDR
Sbjct: 380 LQSLAHMAKGRLVADLVALIASLDPVLGEVDR 411
>gi|319943351|ref|ZP_08017633.1| NADH-quinone oxidoreductase subunit D [Lautropia mirabilis ATCC
51599]
gi|319743166|gb|EFV95571.1| NADH-quinone oxidoreductase subunit D [Lautropia mirabilis ATCC
51599]
Length = 419
Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats.
Identities = 236/420 (56%), Positives = 297/420 (70%), Gaps = 29/420 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LE+DGE+V+R DPHIGLLHR TEKL E +T+LQ +P
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLEMDGEVVQRADPHIGLLHRATEKLAEQRTYLQTLP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY LAVEK+LGIE PIR + IRV++ EI RIL+HL+ + + A+DV
Sbjct: 62 YMDRLDYVSMMCNEHAYVLAVEKMLGIEAPIRARYIRVMFDEITRILNHLMWIGSHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE L YE SG+RMHAAY+RPGGV D+P +
Sbjct: 122 GAMAVILYAFREREALFDCYEAVSGARMHAAYYRPGGVDGDLPGTMAKYKAGGKGGISES 181
Query: 170 -------------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWG 216
++ I + D FP+ +++ LLT NRI+KQR V IG V+ E A G
Sbjct: 182 RAKALNLDRQGSLLDFIESFTDVFPTCVDEYETLLTDNRIWKQRLVGIGVVEPERAKALG 241
Query: 217 FSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQC 276
+G M+RGSG WDLRK QPY Y ++DFDIP+G +GD YDRYLVR+ EMR+S +IIRQC
Sbjct: 242 LTGPMLRGSGVVWDLRKFQPYAVYDKVDFDIPVGVNGDSYDRYLVRVNEMRQSNRIIRQC 301
Query: 277 VNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAP 336
V L + GP+ D K+ PPKR MK +ME LIHHFK +TEG HVP GE YAAVE P
Sbjct: 302 VEWL--RANPGPIMIDDYKVAPPKRVAMKSNMEELIHHFKYFTEGMHVPEGEAYAAVEHP 359
Query: 337 KGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
KGEFG+YL+SDG NKPYR KIR PG+ HLQA++ + +GH LADV ++GS DIVFGE+DR
Sbjct: 360 KGEFGIYLVSDGANKPYRMKIRPPGFVHLQALDEMSRGHMLADVVTLIGSQDIVFGEIDR 419
>gi|221117080|ref|XP_002156340.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein
2, partial [Hydra magnipapillata]
Length = 451
Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats.
Identities = 245/382 (64%), Positives = 306/382 (80%), Gaps = 4/382 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+K + T+NFGPQHPAAHGVLRL+LEL GE+VER DPHIGLLHRGTEKLIE KT+LQA+
Sbjct: 74 EKLVTNMTLNFGPQHPAAHGVLRLVLELSGEVVERADPHIGLLHRGTEKLIEYKTYLQAL 133
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E Y+LAVEKLL I+IP R + IRV+++EI RI++H++ +TT A+D
Sbjct: 134 PYFDRLDYVSMMTNEQVYSLAVEKLLNIQIPERAKWIRVMFAEITRIMNHIMGITTHALD 193
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP W FEEREKLM FYERASG+R+HAAY RPGGV DIP L++DI + F
Sbjct: 194 VGAMTPFFWMFEEREKLMEFYERASGARLHAAYVRPGGVALDIPIGLLDDIWHFMSKFGQ 253
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++++ ++LT NRI+KQR V+IG V E+A +G SGVM+RGSG WDLRKSQPY+ Y +
Sbjct: 254 RIDELEEMLTHNRIWKQRLVDIGVVSTENALSYGMSGVMLRGSGFKWDLRKSQPYDAYDK 313
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++FD+PIGK+GDCYDRYL R+ EMR+SV+I+ QC+N++ G V D KI PPKRA
Sbjct: 314 VEFDVPIGKNGDCYDRYLCRVEEMRQSVRIVEQCLNKM----PPGEVRIDDAKISPPKRA 369
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SME+LIHHFKLYTEGY VP GE Y A+EAPKGE GVYL+SDG NKPYRCKIRAPG+
Sbjct: 370 EMKESMEALIHHFKLYTEGYSVPPGETYTAIEAPKGEMGVYLVSDGSNKPYRCKIRAPGF 429
Query: 363 AHLQAMEFLCKGHQLADVSAIL 384
HL +++++ KGH LADV AI+
Sbjct: 430 YHLASIDYMSKGHMLADVVAII 451
>gi|332968232|gb|EGK07309.1| NADH-quinone oxidoreductase subunit D [Kingella kingae ATCC 23330]
Length = 418
Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats.
Identities = 244/418 (58%), Positives = 306/418 (73%), Gaps = 26/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K R++TINFGPQHPAAHGVLR+ILEL+GE + R DPHIGLLHRGTEKL ETKT+LQ +P
Sbjct: 2 AKLRNYTINFGPQHPAAHGVLRMILELEGETIVRADPHIGLLHRGTEKLAETKTYLQTLP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M E AY +A+EKL+GIE+PIR + IR +++E+ RIL+HL+ V + A+D+
Sbjct: 62 YMDRLDYVSMMVNEQAYCMAIEKLVGIEVPIRAKYIRTMFAEVTRILNHLMGVGSHALDI 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP---------------- 167
GA+T L+ F +RE+LM YE SG+RMHAAYFRPGGV++D+P
Sbjct: 122 GAMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKYRNAKVL 181
Query: 168 ---------ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
+++ I +C+ FP ++ + LLT NRI+KQR V IG V E A GF+
Sbjct: 182 KELNASREGTMLDFIDAFCERFPRNIDTLETLLTDNRIWKQRTVGIGVVSPERALQKGFT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
GVM+RGSG WD+RK QPYE Y ++DFDIP+G +GDCYDRYL RM EMR+SV+II+QC +
Sbjct: 242 GVMLRGSGIEWDVRKKQPYEVYDQIDFDIPVGVNGDCYDRYLCRMAEMRQSVRIIKQCAD 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + PV + K+ PPKR DMK ME LIHHFKL+TEG HVP GE Y AVE PKG
Sbjct: 302 WLRANPNL-PVITENHKVAPPKRTDMKIGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKG 360
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+Y+ISDG NKPYR KIRAPG+AHLQ M+ + +GH LADV AI+G+ DIVFGEVDR
Sbjct: 361 EFGIYMISDGANKPYRLKIRAPGFAHLQGMDEMARGHMLADVVAIIGTQDIVFGEVDR 418
>gi|241663481|ref|YP_002981841.1| NADH dehydrogenase subunit D [Ralstonia pickettii 12D]
gi|309781855|ref|ZP_07676588.1| NADH dehydrogenase (quinone), D subunit [Ralstonia sp. 5_7_47FAA]
gi|240865508|gb|ACS63169.1| NADH dehydrogenase I, D subunit [Ralstonia pickettii 12D]
gi|308919496|gb|EFP65160.1| NADH dehydrogenase (quinone), D subunit [Ralstonia sp. 5_7_47FAA]
Length = 417
Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats.
Identities = 234/418 (55%), Positives = 299/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E KT++Q+VP
Sbjct: 2 ADIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTWIQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY +A+E+LLG+E+P+R Q IRV++ EI RI++HL+ + + A+DV
Sbjct: 62 YMDRLDYVSMMVNEHAYVMAIERLLGLEVPLRAQYIRVMFDEITRIMNHLMWIGSHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE L YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMAVFLYAFREREDLFDMYEAVSGARMHAAYYRPGGVYRDLPDTMPQYKASKVRNEKAL 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + + FP +++ LLT NRI+KQR V IG V E A GFS
Sbjct: 182 AALNETRSGSLLDFIEDFTNRFPKYVDEYETLLTDNRIWKQRLVGIGVVSPERALNKGFS 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG WD+RK QPYE Y +DFDIP+G +GDCYDRYLVR+ EMR+S +IIRQC+
Sbjct: 242 GAMLRGSGIEWDVRKKQPYEVYDRIDFDIPVGVNGDCYDRYLVRVEEMRQSNRIIRQCIE 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ PP R DMK +ME LIHHFKL+TEG HVP GE YAAVE PKG
Sbjct: 302 WL--RKNPGPVITDNHKVAPPSRVDMKTNMEELIHHFKLFTEGMHVPEGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+Y ISDG NKPYR KIRAPG+ HL A++ + KGH +AD I+G+ DIVFGE+DR
Sbjct: 360 EFGIYAISDGANKPYRLKIRAPGFVHLAALDEMAKGHMIADAVTIIGTQDIVFGEIDR 417
>gi|289667377|ref|ZP_06488452.1| NADH dehydrogenase subunit D [Xanthomonas campestris pv. musacearum
NCPPB4381]
Length = 435
Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats.
Identities = 232/419 (55%), Positives = 301/419 (71%), Gaps = 27/419 (6%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K++ R++T+NFGPQHPAAHGVLRLILE+DGE V R DPHIGLLHRGTEKL E+K F Q+V
Sbjct: 19 KQEIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHRGTEKLAESKPFNQSV 78
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DRLDYV+ M EHAY LA+E L+GIE P R Q IR ++ EI RI +HL+ V + A+D
Sbjct: 79 PYMDRLDYVSMMCNEHAYVLAIESLMGIEAPERAQYIRTMFDEITRIKNHLMWVGSNALD 138
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE-------------- 168
+GA+ L+ F ERE+LM YE SG+RMHAAY+RPGGV++D+P
Sbjct: 139 LGAMAVMLYAFREREELMDVYEAVSGARMHAAYYRPGGVYRDLPDRMPKYKESRWHKGGA 198
Query: 169 -----------LVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF 217
+++ + + ++FPS +++ LLT NRI+KQR V++G + + A WG
Sbjct: 199 LKQLNAAREGSMLDFLEDFTNTFPSRVDEYETLLTDNRIWKQRTVDVGIISPDLARAWGM 258
Query: 218 SGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCV 277
+G M+RGSG WDLRK QPY Y +DFDIP+G +GDCYDRYLVR+ EMRES +II+QCV
Sbjct: 259 TGPMLRGSGIEWDLRKKQPYAKYDAVDFDIPVGTNGDCYDRYLVRVAEMRESNRIIKQCV 318
Query: 278 NRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPK 337
L GPV ++ K+ PP R MK ME+LIHHFKL++EGY VP GE Y+AVEAPK
Sbjct: 319 KWLKA--NPGPVMVTNFKVAPPSREGMKDDMEALIHHFKLFSEGYCVPAGETYSAVEAPK 376
Query: 338 GEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GEFG YL+SDG NKP+R +RAPG+AHL +M+ + +G+ LADV A++G+ D+VFGEVDR
Sbjct: 377 GEFGCYLMSDGANKPFRVHLRAPGFAHLSSMDAVVRGYLLADVVAMIGTYDLVFGEVDR 435
>gi|121609759|ref|YP_997566.1| NADH dehydrogenase subunit D [Verminephrobacter eiseniae EF01-2]
gi|229891304|sp|A1WLP1|NUOD_VEREI RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|121554399|gb|ABM58548.1| NADH dehydrogenase I, D subunit [Verminephrobacter eiseniae EF01-2]
Length = 417
Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats.
Identities = 231/418 (55%), Positives = 299/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++ +NFGPQHPAAHGVLRL+LELDGE+V+R DPHIGLLHR TEKL E KT++Q++P
Sbjct: 2 AEIKNYCLNFGPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRATEKLAEHKTYIQSLP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY LA+EKLLG+ +P+R Q IRVL++EI R+L+HL+ + + A D
Sbjct: 62 YMDRLDYVSMMCNEHAYCLALEKLLGLPVPLRAQYIRVLFAEITRLLNHLMWLGSHANDC 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
G+ T ++ F ERE L YE SG+RMHAAYFRPGGV++D+P +
Sbjct: 122 GSSTMLMYTFREREDLFDMYEAVSGARMHAAYFRPGGVYRDLPDSMPRYQASKIRNARAL 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP +++ LLT NRI+KQR V IG V + A G +
Sbjct: 182 AALNQNRQGSLLDFIADFAQRFPGCVDEYETLLTDNRIWKQRTVGIGVVSPQRALNLGMT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG AWDLRK+QPY+ Y +DFD+P+GK GDCYDRYLVR+ EMRE+ +II QCV
Sbjct: 242 GPMLRGSGIAWDLRKTQPYDVYEHMDFDVPVGKTGDCYDRYLVRVQEMREANRIIGQCVA 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ P RA MK +ME LIHHFKL+TEG+HVP GE YAAVE PKG
Sbjct: 302 WL--RANPGPVITDNHKVAAPGRAAMKSNMEELIHHFKLFTEGFHVPEGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YL+SDG NKPYR KIRAPG+AHL ++ + +GH +AD AI+G++DIVFGE+DR
Sbjct: 360 EFGIYLVSDGANKPYRLKIRAPGFAHLATLDEMARGHMIADAVAIIGTMDIVFGEIDR 417
>gi|73540667|ref|YP_295187.1| NADH dehydrogenase subunit D [Ralstonia eutropha JMP134]
gi|123625482|sp|Q473U0|NUOD_RALEJ RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|72118080|gb|AAZ60343.1| NADH dehydrogenase I, D subunit [Ralstonia eutropha JMP134]
Length = 417
Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats.
Identities = 232/418 (55%), Positives = 298/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E K+++Q VP
Sbjct: 2 ADIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKSWIQNVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M+ EHAY +A+E+LLGIE+PIR Q IRV++ EI R+L+HL+ + A+DV
Sbjct: 62 YMDRLDYVSMMSNEHAYVMAIERLLGIEVPIRAQYIRVMFDEITRLLNHLMWIGAHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE + YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMAVFLYAFREREDMFDMYEAVSGARMHAAYYRPGGVYRDLPDTMPQYRASKVHNERAI 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + + FP +++ LLT NRI+KQR V+IG V E A GF+
Sbjct: 182 KVMNEARSGSLLDFIEDFTNRFPKYVDEYETLLTDNRIWKQRLVDIGVVSPERALQMGFT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG AWDLRK QPYE Y ++DFD+P+G GDCY RYLVR+ EMR+S +II+QC+
Sbjct: 242 GPMLRGSGIAWDLRKKQPYEVYDKMDFDVPVGVGGDCYARYLVRVEEMRQSNRIIKQCIE 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L GPV + K+ PP R DMK +ME LIHHFKL+TEG HVP GE YAAVE PKG
Sbjct: 302 WLRR--NPGPVITDNHKVAPPSRVDMKSNMEELIHHFKLFTEGMHVPEGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+Y ISDG NKPYR KIRAPG+ HL A++ + KGH +AD I+G+ DIVFGE+DR
Sbjct: 360 EFGIYAISDGANKPYRLKIRAPGFPHLAALDEMAKGHMIADAVTIIGTQDIVFGEIDR 417
>gi|319787440|ref|YP_004146915.1| NADH dehydrogenase I, D subunit [Pseudoxanthomonas suwonensis 11-1]
gi|317465952|gb|ADV27684.1| NADH dehydrogenase I, D subunit [Pseudoxanthomonas suwonensis 11-1]
Length = 435
Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats.
Identities = 236/419 (56%), Positives = 299/419 (71%), Gaps = 27/419 (6%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ R++T+NFGPQHPAAHGVLRLILE+DGE + R DPH+GLLHRGTEKL E+K F Q++
Sbjct: 19 RQEIRNYTMNFGPQHPAAHGVLRLILEMDGETIVRADPHVGLLHRGTEKLAESKPFNQSI 78
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DRLDYV+ M EHAY A+E LLGIE P R Q IR ++ EI RIL+HL+ V + A+D
Sbjct: 79 PYMDRLDYVSMMCNEHAYVRAIETLLGIEAPERAQYIRTMFDEITRILNHLMWVGSNALD 138
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL------------- 169
+GA+ L+ F ERE+LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 139 LGAMAVFLYAFREREELMDVYEAVSGARMHAAYYRPGGVYRDLPDHMPKYKESPWHKGAK 198
Query: 170 ------------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF 217
++ I + FP +++ LLT NRI+KQR V IG V E A WG
Sbjct: 199 LKRFNEAREGSLLDYIEHFTREFPKRVDEYETLLTDNRIWKQRTVGIGVVTPEQAHAWGM 258
Query: 218 SGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCV 277
+G M+RGSG AWDLRK QPY Y +DFDIP+G +GDCYDRYLVR+ EMR+S +II QCV
Sbjct: 259 TGPMLRGSGIAWDLRKKQPYARYDAVDFDIPVGVNGDCYDRYLVRIAEMRQSNRIIAQCV 318
Query: 278 NRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPK 337
L K GPV + K+ PPKR +MK ME+LIHHFKL++EGY VP GE YAAVEAPK
Sbjct: 319 KWL--KENPGPVMVRNFKVAPPKREEMKDDMEALIHHFKLFSEGYCVPAGETYAAVEAPK 376
Query: 338 GEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GEFG YL+SDG NKP+R +RAPG+AHL +M+ + +GH LADV A++G+ D+VFGEVDR
Sbjct: 377 GEFGCYLVSDGANKPFRVHLRAPGFAHLSSMDEIVRGHMLADVVAMIGTYDLVFGEVDR 435
>gi|15150763|ref|NP_150429.1| NADH dehydrogenase subunit 7 [Pylaiella littoralis]
gi|3122570|sp|Q37720|NDUS2_PYLLI RecName: Full=NADH-ubiquinone oxidoreductase 49 kDa subunit;
AltName: Full=NADH dehydrogenase subunit 7
gi|728615|emb|CAA88557.1| NADH dehydrogenase (ubiquinone), subunit 7 [Pylaiella littoralis]
gi|15147769|emb|CAC50870.1| NADH dehydrogenase subunit 7 [Pylaiella littoralis]
Length = 398
Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats.
Identities = 254/388 (65%), Positives = 306/388 (78%), Gaps = 4/388 (1%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
FTINFGPQHPAAHGVLRLILEL+GE+V+R DPHIGLLHRGTEKLIE KT+ QA+PYFDRL
Sbjct: 15 FTINFGPQHPAAHGVLRLILELNGEVVQRADPHIGLLHRGTEKLIEAKTYFQALPYFDRL 74
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
DYV+ M QEH YAL+VE LL + IP R Q IRVL++EI RIL+HLL V AMDVGA+TP
Sbjct: 75 DYVSMMCQEHTYALSVENLLQVSIPRRAQFIRVLFAEITRILNHLLAVGCHAMDVGAMTP 134
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
LW FEEREKLM FYER SG+RMHA+YFRPGGV QDI LV+DI + F L++I
Sbjct: 135 FLWAFEEREKLMEFYERVSGARMHASYFRPGGVSQDISVGLVDDIFAFVAQFGQRLDEIE 194
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
++LT NRI+++R V+IG V ++A WGFSGVM+RGSG WDLRK++PYE YS+L+F
Sbjct: 195 EMLTDNRIWQERLVDIGVVSAQEAIDWGFSGVMLRGSGIRWDLRKNEPYEIYSDLNFQGV 254
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
+GK GDCYDRYL R+ EMR+S+ II QC+N++ G V D KI PP R+++K+SM
Sbjct: 255 VGKTGDCYDRYLARVEEMRQSLSIIYQCLNKMPR----GSVKIDDAKISPPSRSEVKQSM 310
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
ESLIHHFKLYTEG VP GE Y A EAPKGEFGVYL+S G ++PYRCKI+APG++HLQ +
Sbjct: 311 ESLIHHFKLYTEGVFVPAGETYTATEAPKGEFGVYLVSKGSSRPYRCKIKAPGFSHLQGL 370
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVDR 396
F+ H LADV I+G+ DIVFGEVDR
Sbjct: 371 NFMACSHMLADVVTIIGTQDIVFGEVDR 398
>gi|115384346|ref|XP_001208720.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor [Aspergillus terreus NIH2624]
gi|114196412|gb|EAU38112.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor [Aspergillus terreus NIH2624]
Length = 475
Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats.
Identities = 235/387 (60%), Positives = 297/387 (76%), Gaps = 4/387 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+K R +T+NFGPQHPAAHGVLRLILEL+GE + R DPH+GLLHRGTEKLIE KT++QA+P
Sbjct: 89 RKIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRSDPHVGLLHRGTEKLIEYKTYMQALP 148
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M E ++LAVEKLL IEIP R + IR ++ E+ RIL+HL++V + AMDV
Sbjct: 149 YFDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKYIRTMFGEMTRILNHLMSVLSHAMDV 208
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP LWGFEEREKLM FYER SG+R+HAAY RPGGV QDIP L++DI W F
Sbjct: 209 GALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDIPLGLLDDIYQWATQFGDR 268
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ +LLT NRI+K R +G V DA F+GVM+RGSG WD+RKSQPY+ Y ++
Sbjct: 269 IDETEELLTDNRIWKARTQGVGVVNAADALNMSFTGVMLRGSGVPWDIRKSQPYDAYDKV 328
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FD+P+G +GDCYDRYL RM E R+S++II QC+N++ GPV D KI PP RA
Sbjct: 329 EFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNQMPA----GPVKVEDYKISPPPRAA 384
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK +ME+LIHHF L+T+GY VP GE Y+A+EAPKGE GV+L+SDG +PYRCKIRAPG+A
Sbjct: 385 MKENMEALIHHFLLFTKGYAVPPGETYSAIEAPKGEMGVFLVSDGSERPYRCKIRAPGFA 444
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIV 390
HL + + +GH LAD AI+G L++
Sbjct: 445 HLGGFDQVARGHLLADAVAIIGMLELC 471
>gi|296116532|ref|ZP_06835142.1| NADH dehydrogenase subunit D [Gluconacetobacter hansenii ATCC
23769]
gi|295976744|gb|EFG83512.1| NADH dehydrogenase subunit D [Gluconacetobacter hansenii ATCC
23769]
Length = 416
Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats.
Identities = 243/392 (61%), Positives = 306/392 (78%), Gaps = 4/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ S +NFGPQHP+AHGVLRL+LE++GE+V R PH+GLLHRGTEKLIE KT+ +A+PY
Sbjct: 29 EIDSHALNFGPQHPSAHGVLRLVLEMEGEVVTRAIPHVGLLHRGTEKLIEYKTYPKALPY 88
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
FDRLDYV+PM +E A+ALA EKLL +EIP R + IRV+++EI RIL+H+LN+T+ +D G
Sbjct: 89 FDRLDYVSPMCEEQAFALATEKLLNLEIPDRAKWIRVMFAEITRILNHILNLTSFGLDCG 148
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
ALTP LWG+EEREKL+ FYE ASG+R HA YFRPGGV +D+P L E I W FP +
Sbjct: 149 ALTPALWGYEEREKLLEFYEAASGARFHANYFRPGGVARDLPAGLEERIAQWTTEFPRWI 208
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+D+ LLT NRI+KQR V IG E A WGFSG +R SG WDLR+SQPY+ Y +++
Sbjct: 209 DDLESLLTNNRIWKQRTVGIGVFTSEQALAWGFSGPCLRASGVPWDLRRSQPYDNYDKVE 268
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F++P+ + GDCYDRYLVR+ EMRESVKI+ QC+ ++ K GP+ D KI PP R +M
Sbjct: 269 FNVPVARQGDCYDRYLVRVAEMRESVKIVAQCLAQM----KPGPIKVQDRKIAPPPRREM 324
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
KRSME+LIHHFKL+TEGYHVP G Y AVE+PKGEFGVYL++DG N+PYRCKIR G+AH
Sbjct: 325 KRSMEALIHHFKLFTEGYHVPPGATYTAVESPKGEFGVYLVADGSNRPYRCKIRPTGFAH 384
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
LQAM+ + + H LAD AI+GSLD+VFGE+DR
Sbjct: 385 LQAMDVMARRHMLADAVAIIGSLDLVFGEIDR 416
>gi|323525439|ref|YP_004227592.1| NADH dehydrogenase I subunit D [Burkholderia sp. CCGE1001]
gi|323382441|gb|ADX54532.1| NADH dehydrogenase I, D subunit [Burkholderia sp. CCGE1001]
Length = 417
Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats.
Identities = 239/418 (57%), Positives = 302/418 (72%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL ETKTF+Q+VP
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAETKTFIQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EH Y +A+EKLLGIE+P+R Q IRV++ EI R+L+HL+ + A+DV
Sbjct: 62 YMDRLDYVSMMVNEHGYVMAIEKLLGIEVPVRAQYIRVMFDEITRVLNHLMWIGAHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNAKAL 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP+ +++ LLT NRI+KQR V IG V E A G S
Sbjct: 182 SKMNENRQGSLLDFIDDFFTRFPTYVDEYETLLTDNRIWKQRLVGIGVVSPERALQLGMS 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG WDLRK QPYE Y +LDFDIP+G +GDCYDRYLVR+ EMR+S +I++QC+
Sbjct: 242 GAMLRGSGVEWDLRKKQPYEVYEKLDFDIPVGVNGDCYDRYLVRVEEMRQSTRIVKQCIE 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ PP R MK +ME LIHHFKL+TEG+HVP GE YAAVE PKG
Sbjct: 302 WL--RKNPGPVMIDNHKVAPPSRVGMKSNMEELIHHFKLFTEGFHVPEGETYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YLISDG NKPYR KIRAPGYAHL A++ + +GH +AD I+G+ DIVFGEVDR
Sbjct: 360 EFGIYLISDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEVDR 417
>gi|289665176|ref|ZP_06486757.1| NADH dehydrogenase subunit D [Xanthomonas campestris pv. vasculorum
NCPPB702]
Length = 435
Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats.
Identities = 231/419 (55%), Positives = 300/419 (71%), Gaps = 27/419 (6%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K++ R++T+NFGPQHPAAHGVLRLILE+DGE V R DPHIGLLHRGTEKL E+K F Q+V
Sbjct: 19 KQEIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHRGTEKLAESKPFNQSV 78
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DRLDYV+ M EHAY A+E L+GIE P R Q IR ++ EI RI +HL+ V + A+D
Sbjct: 79 PYMDRLDYVSMMCNEHAYVRAIESLMGIEAPERAQYIRTMFDEITRIKNHLMWVGSNALD 138
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE-------------- 168
+GA+ L+ F ERE+LM YE SG+RMHAAY+RPGGV++D+P
Sbjct: 139 LGAMAVMLYAFREREELMDVYEAVSGARMHAAYYRPGGVYRDLPDRMPKYKESRWHKGGA 198
Query: 169 -----------LVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF 217
+++ + + ++FPS +++ LLT NRI+KQR V++G + + A WG
Sbjct: 199 LKQLNAAREGSMLDFLEDFTNTFPSRVDEYETLLTDNRIWKQRTVDVGIISPDLARAWGM 258
Query: 218 SGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCV 277
+G M+RGSG WDLRK QPY Y +DFDIP+G +GDCYDRYLVR+ EMRES +II+QCV
Sbjct: 259 TGPMLRGSGIEWDLRKKQPYAKYDAVDFDIPVGTNGDCYDRYLVRVAEMRESNRIIKQCV 318
Query: 278 NRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPK 337
L GPV ++ K+ PP R MK ME+LIHHFKL++EGY VP GE Y+AVEAPK
Sbjct: 319 KWLKA--NPGPVMVTNFKVAPPSREGMKDDMEALIHHFKLFSEGYCVPAGETYSAVEAPK 376
Query: 338 GEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GEFG YL+SDG NKP+R +RAPG+AHL +M+ + +G+ LADV A++G+ D+VFGEVDR
Sbjct: 377 GEFGCYLMSDGANKPFRVHLRAPGFAHLSSMDAVVRGYLLADVVAMIGTYDLVFGEVDR 435
>gi|221068609|ref|ZP_03544714.1| NADH dehydrogenase I, D subunit [Comamonas testosteroni KF-1]
gi|220713632|gb|EED69000.1| NADH dehydrogenase I, D subunit [Comamonas testosteroni KF-1]
Length = 417
Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats.
Identities = 234/418 (55%), Positives = 298/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++++NFGPQHPAAHGVLRL+LELDGE+V+R DPHIGLLHR TEKL E+KT++Q++P
Sbjct: 2 AEIKNYSLNFGPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRATEKLAESKTYIQSLP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDY + M+ EHAY LA+EKL+GIE+PIR Q IRV++SEI RI++HL+ + + D
Sbjct: 62 YMDRLDYCSMMSNEHAYCLAIEKLMGIEVPIRAQYIRVMFSEITRIMNHLMWLGSSGNDA 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP---------------- 167
G+ T ++ F ERE LM YE SG+RMHAAYFRPGGV++D+P
Sbjct: 122 GSSTILIYSFREREALMDMYEAVSGARMHAAYFRPGGVYRDLPDSMPQYKASKVRNVRSM 181
Query: 168 ---------ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
+++ I + FP ++ LLT NRI+KQRNV IG V E A G +
Sbjct: 182 EAMNEDRKGSMLDFIDAFTQRFPKCADEYETLLTDNRIWKQRNVGIGVVSAERAINLGLT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+R SG WD+RK+QPYE Y +LDFDIP+G GDCYDRYLVRM EMRES KII+QCV+
Sbjct: 242 GPMLRASGLPWDMRKTQPYEVYDKLDFDIPVGATGDCYDRYLVRMAEMRESNKIIKQCVD 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ P R MK +ME LIHHFKL+TEG+ VP GE YA+VE PKG
Sbjct: 302 WL--RVNPGPVITDNHKVAPASREAMKSNMEELIHHFKLFTEGFKVPEGEAYASVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YLISDG NKPYR KIR PG+AH+ A++ L +GH LAD +L +LDIVFG+VDR
Sbjct: 360 EFGIYLISDGANKPYRLKIRPPGFAHMAALDELSRGHMLADAVMVLSTLDIVFGDVDR 417
>gi|163848443|ref|YP_001636487.1| NADH dehydrogenase I subunit D [Chloroflexus aurantiacus J-10-fl]
gi|222526371|ref|YP_002570842.1| NADH dehydrogenase I subunit D [Chloroflexus sp. Y-400-fl]
gi|218534397|sp|A9WFB4|NUOD2_CHLAA RecName: Full=NADH-quinone oxidoreductase subunit D 2; AltName:
Full=NADH dehydrogenase I subunit D 2; AltName:
Full=NDH-1 subunit D 2
gi|163669732|gb|ABY36098.1| NADH dehydrogenase I, D subunit [Chloroflexus aurantiacus J-10-fl]
gi|222450250|gb|ACM54516.1| NADH dehydrogenase I, D subunit [Chloroflexus sp. Y-400-fl]
Length = 411
Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats.
Identities = 180/392 (45%), Positives = 265/392 (67%), Gaps = 1/392 (0%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ + +N GP HP+ HGVLRL+LELDGE+V V P +G LH G EK +E+KT+ +AV
Sbjct: 21 RTETMVLNMGPHHPSTHGVLRLVLELDGEVVVNVAPDVGYLHTGIEKTMESKTYQKAVVL 80
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY+AP++ YALAVEKLL +EIP R Q+ RVL +E+ RI SHL+ + T A+D+
Sbjct: 81 TDRMDYLAPLSNNLCYALAVEKLLDVEIPERAQIARVLLTELQRISSHLVWLGTHALDLA 140
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++ L+ F ERE+++ +E SG+RM +YFR GG+ D+P + + + + PS +
Sbjct: 141 AMSVFLYAFREREQILDIFELVSGARMMTSYFRIGGLAYDLPSDFIPTVEQFLAVMPSRI 200
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
++ DLLT N ++ +R V +G + + A G +G +R +G A+D+RK+ PY Y
Sbjct: 201 DEYEDLLTANPLWLERTVGVGVIDAQSAIALGLTGANLRATGVAYDVRKAMPYSGYETYS 260
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F+IP+GK+GD YDRY VR+ EMR+SVKI++Q RL GPV S+ K+ PP + ++
Sbjct: 261 FEIPVGKNGDIYDRYRVRIAEMRQSVKIVQQATERLRELGP-GPVVTSNRKVAPPPKREI 319
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
SMESLIHHFKL+TEG+ P G+ Y ++E+P+G G Y++SDG KP+R RAP + +
Sbjct: 320 TESMESLIHHFKLWTEGFKPPRGDAYVSIESPRGILGCYVVSDGSPKPWRVHFRAPSFIN 379
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
LQ++ + KG +AD+ A++ SLD V GEVDR
Sbjct: 380 LQSLAHMAKGRMVADLVALIASLDPVLGEVDR 411
>gi|329114681|ref|ZP_08243440.1| NADH-quinone oxidoreductase subunit D [Acetobacter pomorum DM001]
gi|326696161|gb|EGE47843.1| NADH-quinone oxidoreductase subunit D [Acetobacter pomorum DM001]
Length = 426
Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats.
Identities = 240/392 (61%), Positives = 307/392 (78%), Gaps = 4/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ S +NFGPQHP+AHGVLRL+LE++GE+V R PHIGLLHRGTEKLIE KT+ +A+PY
Sbjct: 39 EIDSHALNFGPQHPSAHGVLRLVLEMEGEVVARAVPHIGLLHRGTEKLIEYKTYQKALPY 98
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
FDRLDYV+PM +E A+ALA EKLLGI+IP R + +RV+++EI R+L+H+LN+T +D G
Sbjct: 99 FDRLDYVSPMCEEQAFALATEKLLGIDIPERAKWLRVMFAEITRVLNHILNLTAMGLDCG 158
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A+TP LWG+EEREKL+ FYE ASG+R HA YFRPGGV +D+P L + IG W FP +
Sbjct: 159 AVTPALWGYEEREKLLEFYEAASGARFHANYFRPGGVARDVPAGLEDKIGAWAKEFPKWI 218
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+++ LLT NRI+KQR V IG E A WGFSG +R SG WDLR++QPY+ Y +++
Sbjct: 219 DELEGLLTENRIWKQRTVGIGVFTTEQALAWGFSGPCLRASGVPWDLRRNQPYDNYHKVE 278
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F++P+ + GDCYDRYLVR+ EMRESVKII QC++++ G V DPK PP RA+M
Sbjct: 279 FNVPVARQGDCYDRYLVRVAEMRESVKIIEQCLSQMR----PGDVKVQDPKFSPPPRAEM 334
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
KRSME+LIHHFKL++EGYHVP G Y AVE+PKGEFGVYL++DG N+PYRCKIR G+AH
Sbjct: 335 KRSMEALIHHFKLFSEGYHVPPGATYTAVESPKGEFGVYLVADGSNRPYRCKIRPTGFAH 394
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
LQA++ L + LAD+ AI+GSLD+VFGEVDR
Sbjct: 395 LQAIDELSRRGMLADMVAIIGSLDLVFGEVDR 426
>gi|194289162|ref|YP_002005069.1| NADH dehydrogenase subunit d [Cupriavidus taiwanensis LMG 19424]
gi|229891387|sp|B3R3X0|NUOD_CUPTR RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|193222997|emb|CAQ69002.1| NADH:ubiquinone oxidoreductase complex I, chain D [Cupriavidus
taiwanensis LMG 19424]
Length = 417
Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats.
Identities = 234/418 (55%), Positives = 301/418 (72%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E KT++Q+VP
Sbjct: 2 ADIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTWIQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY +A+E+LLG+E+P+R Q IRV++ EI R+L+HL+ + + A+DV
Sbjct: 62 YMDRLDYVSMMVNEHAYVMAIERLLGLEVPVRAQYIRVMFDEITRLLNHLMWIGSHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE + YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMAVFLYAFREREDMFDMYEAVSGARMHAAYYRPGGVYRDLPDTMPQYRASKVHNERAI 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + + FP +++ LLT NRI+KQR V+IG V E A GF+
Sbjct: 182 KAMNEARSGSLLDFIEDFTNRFPKYVDEYETLLTDNRIWKQRLVDIGVVSPERALQMGFT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG AWDLRK QPYE Y +LDFD+P+G GDCY RYLVR+ EMR+S +II+QCV+
Sbjct: 242 GPMLRGSGIAWDLRKKQPYEVYDKLDFDVPVGVGGDCYARYLVRVEEMRQSNRIIKQCVD 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L GPV + K+ PP R DMK +ME LIHHFKL+TEG HVP GE YAAVE PKG
Sbjct: 302 WLRR--NPGPVITENHKVAPPSRVDMKSNMEELIHHFKLFTEGIHVPEGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+Y ISDG NKPYR KIRAPG+AHL A++ + KGH +AD I+G+ DIVFGE+DR
Sbjct: 360 EFGIYAISDGANKPYRLKIRAPGFAHLAALDEMAKGHMIADAVTIIGTQDIVFGEIDR 417
>gi|187923343|ref|YP_001894985.1| NADH dehydrogenase subunit D [Burkholderia phytofirmans PsJN]
gi|229891280|sp|B2T2F0|NUOD_BURPP RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|187714537|gb|ACD15761.1| NADH dehydrogenase I, D subunit [Burkholderia phytofirmans PsJN]
Length = 417
Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats.
Identities = 236/418 (56%), Positives = 300/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL ETKTF+Q+VP
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAETKTFIQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EH Y +A+EKLLGIE+P+R Q IRV++ E+ R+L+HL+ + A+DV
Sbjct: 62 YMDRLDYVSMMVNEHGYVMAIEKLLGIEVPVRAQYIRVMFDEVTRVLNHLMWIGAHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNAKAL 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP +++ LLT NRI+KQR V IG V E A G +
Sbjct: 182 SKMNENRQGSLLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALNLGMT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG WDLRK QPYE Y +LDFDIP+G +GDCYDRYLVR+ EMR+S +I++QC+
Sbjct: 242 GAMLRGSGIEWDLRKKQPYEVYDKLDFDIPVGVNGDCYDRYLVRVEEMRQSTRIVKQCIE 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ PP R MK +ME LIHHFKL+TEG+HVP GE YAAVE PKG
Sbjct: 302 WL--RKNPGPVMIDNHKVAPPSRVGMKSNMEELIHHFKLFTEGFHVPEGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YLISDG NKPYR KIRAPGYAHL ++ + +GH +AD I+G+ DIVFGEVDR
Sbjct: 360 EFGIYLISDGANKPYRLKIRAPGYAHLSTLDEMARGHMIADAVTIIGTQDIVFGEVDR 417
>gi|118602278|ref|YP_903493.1| NADH dehydrogenase subunit D [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
gi|229891301|sp|A1AVR5|NUOD_RUTMC RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|118567217|gb|ABL02022.1| NADH dehydrogenase subunit D [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
Length = 417
Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats.
Identities = 239/418 (57%), Positives = 300/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ R++T+NFGPQHPAAHGVLRLILE+DGE++ER DPHIGLLHRGTEKL+E+K + Q++
Sbjct: 2 AEIRNYTLNFGPQHPAAHGVLRLILEIDGEVIERADPHIGLLHRGTEKLVESKPYNQSIG 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY +A+E +LGI++P R Q IRV++ EI RIL+HL+ + T +DV
Sbjct: 62 YMDRLDYVSMMCNEHAYIMAIETMLGIKVPERAQYIRVMFDEITRILNHLMWLGTHGLDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA++ L+ F EREKL+ YE SGSRMHA Y+RPGGV++D+P ++
Sbjct: 122 GAMSIFLYAFREREKLIDCYEAVSGSRMHATYYRPGGVYRDLPDKMPQYLASGFRTDKEL 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP ++ DLLT NRI+KQR VNIG V A GF+
Sbjct: 182 KTMNENRQGSLLDFIADFVKEFPKSIKQYDDLLTDNRIWKQRLVNIGIVSANRAKQLGFT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG AWDLRK+QPY Y +L+FDIP+G GD YDRYLVRM EMR+S II+QCV
Sbjct: 242 GPMLRGSGVAWDLRKNQPYAVYDQLEFDIPVGVTGDSYDRYLVRMEEMRQSNHIIKQCVK 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L G G V + D K+ PPKR DMK MESLIHHFKL+TEGY + GE+Y AVE PKG
Sbjct: 302 WLQG--NPGAVMSDDHKVSPPKRTDMKGDMESLIHHFKLFTEGYCLSEGEIYRAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YLISDG NKPYR KIRAPG+AHL AM + +GH L+DV I+G+ DIVFGE+DR
Sbjct: 360 EFGIYLISDGANKPYRVKIRAPGFAHLAAMNEMARGHMLSDVVTIIGTQDIVFGEIDR 417
>gi|258542719|ref|YP_003188152.1| NADH dehydrogenase subunit D [Acetobacter pasteurianus IFO 3283-01]
gi|256633797|dbj|BAH99772.1| NADH-quinone oxidoreductase chain D [Acetobacter pasteurianus IFO
3283-01]
gi|256636856|dbj|BAI02825.1| NADH-quinone oxidoreductase chain D [Acetobacter pasteurianus IFO
3283-03]
gi|256639909|dbj|BAI05871.1| NADH-quinone oxidoreductase chain D [Acetobacter pasteurianus IFO
3283-07]
gi|256642965|dbj|BAI08920.1| NADH-quinone oxidoreductase chain D [Acetobacter pasteurianus IFO
3283-22]
gi|256646020|dbj|BAI11968.1| NADH-quinone oxidoreductase chain D [Acetobacter pasteurianus IFO
3283-26]
gi|256649073|dbj|BAI15014.1| NADH-quinone oxidoreductase chain D [Acetobacter pasteurianus IFO
3283-32]
gi|256652060|dbj|BAI17994.1| NADH-quinone oxidoreductase chain D [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256655117|dbj|BAI21044.1| NADH-quinone oxidoreductase chain D [Acetobacter pasteurianus IFO
3283-12]
Length = 426
Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats.
Identities = 240/392 (61%), Positives = 306/392 (78%), Gaps = 4/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ S +NFGPQHP+AHGVLRL+LE++GE+V R PHIGLLHRGTEKLIE KT+ +A+PY
Sbjct: 39 EIDSHALNFGPQHPSAHGVLRLVLEMEGEVVARAVPHIGLLHRGTEKLIEYKTYQKALPY 98
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
FDRLDYV+PM +E A+ALA EKLLGI+IP R + +RV+++EI R+L+H+LN+T +D G
Sbjct: 99 FDRLDYVSPMCEEQAFALATEKLLGIDIPERAKWLRVMFAEITRVLNHILNLTAMGLDCG 158
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A+TP LWG+EEREKL+ FYE ASG+R HA YFRPGGV +D+P L + IG W FP +
Sbjct: 159 AVTPALWGYEEREKLLEFYEAASGARFHANYFRPGGVARDVPAGLEDKIGAWAKEFPKWI 218
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+++ LLT NRI+KQR V IG E A WGFSG +R SG WDLR++QPY+ Y +++
Sbjct: 219 DELEGLLTENRIWKQRTVGIGVFTTEQALAWGFSGPCLRASGVPWDLRRNQPYDNYHKVE 278
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F++P+ + GDCYDRYLVR+ EMRESVKII QC+ ++ G V DPK PP RA+M
Sbjct: 279 FNVPVARQGDCYDRYLVRVAEMRESVKIIEQCLTQIR----PGDVKVQDPKFSPPPRAEM 334
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
KRSME+LIHHFKL++EGYHVP G Y AVE+PKGEFGVYL++DG N+PYRCKIR G+AH
Sbjct: 335 KRSMEALIHHFKLFSEGYHVPPGATYTAVESPKGEFGVYLVADGSNRPYRCKIRPTGFAH 394
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
LQA++ L + LAD+ AI+GSLD+VFGEVDR
Sbjct: 395 LQAIDELSRRGMLADMVAIIGSLDLVFGEVDR 426
>gi|91782615|ref|YP_557821.1| NADH dehydrogenase subunit D [Burkholderia xenovorans LB400]
gi|122970575|sp|Q142H0|NUOD_BURXL RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|91686569|gb|ABE29769.1| NADH dehydrogenase subunit D [Burkholderia xenovorans LB400]
Length = 417
Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats.
Identities = 237/418 (56%), Positives = 300/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL ETKTF+Q+VP
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAETKTFIQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EH Y +A+EKLLGI++P+R Q IRV++ EI R+L+HL+ + A+DV
Sbjct: 62 YMDRLDYVSMMVNEHGYVMAIEKLLGIDVPVRAQYIRVMFDEITRVLNHLMWIGAHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNAKAL 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP +++ LLT NRI+KQR V IG V E A G +
Sbjct: 182 SKMNENRQGSLLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALNLGMT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG WDLRK QPYE Y +LDFDIP+G +GDCYDRYLVR+ EMR+S +I++QCV
Sbjct: 242 GAMLRGSGIEWDLRKKQPYEVYDKLDFDIPVGVNGDCYDRYLVRVEEMRQSTRIVKQCVE 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ PP R MK +ME LIHHFKL+TEG+HVP GE YAAVE PKG
Sbjct: 302 WL--RKNPGPVMIDNHKVAPPSRVGMKSNMEELIHHFKLFTEGFHVPEGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YLISDG NKPYR KIRAPGYAHL ++ + +GH +AD I+G+ DIVFGEVDR
Sbjct: 360 EFGIYLISDGANKPYRLKIRAPGYAHLSTLDEMARGHMIADAVTIIGTQDIVFGEVDR 417
>gi|325915542|ref|ZP_08177853.1| NADH dehydrogenase subunit D [Xanthomonas vesicatoria ATCC 35937]
gi|325538258|gb|EGD09943.1| NADH dehydrogenase subunit D [Xanthomonas vesicatoria ATCC 35937]
Length = 435
Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats.
Identities = 230/419 (54%), Positives = 300/419 (71%), Gaps = 27/419 (6%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K++ R++T+NFGPQHPAAHGVLRLILE+DGE V R DPHIGLLHRGTEKL E+K F Q+V
Sbjct: 19 KQEIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHRGTEKLAESKPFNQSV 78
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DRLDYV+ M EHAY A+E L+GIE P R Q IR ++ EI RI +HL+ V + A+D
Sbjct: 79 PYMDRLDYVSMMCNEHAYVRAIESLMGIEAPERAQYIRTMFDEITRIKNHLMWVGSNALD 138
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL------------- 169
+GA+ L+ F ERE+LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 139 LGAMAVMLYAFREREELMDVYEAVSGARMHAAYYRPGGVYRDLPDRMPQYKESRWHKGGA 198
Query: 170 ------------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF 217
++ + + ++FP+ +++ LLT NRI+KQR V++G + + A WG
Sbjct: 199 LKKRNAGREGTLLDFLEEFTNTFPARVDEYETLLTDNRIWKQRTVDVGIISPDLARAWGM 258
Query: 218 SGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCV 277
+G M+RGSG WDLRK QPY Y +DFDIP+G +GDCYDRYLVR+ EMRES +II+QCV
Sbjct: 259 TGPMLRGSGIEWDLRKKQPYAKYDSVDFDIPVGTNGDCYDRYLVRVAEMRESNRIIKQCV 318
Query: 278 NRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPK 337
L GPV ++ K+ PP R MK ME+LIHHFKL++EGY VP GE Y+AVEAPK
Sbjct: 319 KWLKA--NPGPVMVTNFKVAPPSREGMKDDMEALIHHFKLFSEGYCVPAGETYSAVEAPK 376
Query: 338 GEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GEFG YL+SDG NKP+R +RAPG+AHL +M+ + +G+ LADV A++G+ D+VFGEVDR
Sbjct: 377 GEFGCYLMSDGANKPFRVHLRAPGFAHLSSMDAVVRGYLLADVVAMIGTYDLVFGEVDR 435
>gi|209545444|ref|YP_002277673.1| NADH dehydrogenase subunit D [Gluconacetobacter diazotrophicus PAl
5]
gi|218534462|sp|A9HRT9|NUOD_GLUDA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|209533121|gb|ACI53058.1| NADH dehydrogenase I, D subunit [Gluconacetobacter diazotrophicus
PAl 5]
Length = 416
Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats.
Identities = 240/392 (61%), Positives = 307/392 (78%), Gaps = 4/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ S +NFGPQHP+AHGVLRL+LE++GE+V R PHIGLLHRGTEKLIE KT+ +A+PY
Sbjct: 29 EIDSHALNFGPQHPSAHGVLRLVLEMEGEVVARAIPHIGLLHRGTEKLIEYKTYPKALPY 88
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
FDRLDYV+PM +E A+ALA EKLLGI+IP R + IRV+++EI RIL+H+LN+T +D G
Sbjct: 89 FDRLDYVSPMCEEQAFALATEKLLGIDIPDRAKWIRVMFAEITRILNHILNLTALGLDCG 148
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A+TP LWG+EEREKL+ FYE ASG+R HA YFRPGGV +D+P L + I W FP+ +
Sbjct: 149 AVTPALWGYEEREKLIEFYEAASGARFHANYFRPGGVSRDLPAGLEDRIAEWARQFPAWI 208
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+D+ LLT NRI+KQR V IG E A WGFSG +R SG WDLR++QPY+ Y +++
Sbjct: 209 DDLESLLTNNRIWKQRTVGIGIFTTEQALAWGFSGPCLRASGVPWDLRRAQPYDNYDKVE 268
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F+IP+ + GDCYDRYL+R+ EMRESV+I+ QC+ ++ K GP+ D KI PP R +M
Sbjct: 269 FNIPVARQGDCYDRYLIRVAEMRESVRIVEQCLAQM----KPGPIKIQDHKITPPPRREM 324
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
KRSME+LIHHFKL+TEGYHVP G Y AVE+PKGEFGVYL++DG N+PYRCKIR G+AH
Sbjct: 325 KRSMEALIHHFKLFTEGYHVPPGATYTAVESPKGEFGVYLVADGSNRPYRCKIRPTGFAH 384
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
LQA++ + + H LAD AI+GSLD+VFGE+DR
Sbjct: 385 LQAIDEMSRRHMLADAVAIIGSLDLVFGEIDR 416
>gi|85708751|ref|ZP_01039817.1| NADH dehydrogenase delta subunit [Erythrobacter sp. NAP1]
gi|85690285|gb|EAQ30288.1| NADH dehydrogenase delta subunit [Erythrobacter sp. NAP1]
Length = 403
Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats.
Identities = 248/392 (63%), Positives = 315/392 (80%), Gaps = 5/392 (1%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
++T+NFGPQHPAAHGVLR+++ELDGE++ERVDPH+GLLHRGTEKLIE KT+LQA+PYF
Sbjct: 16 ITNYTLNFGPQHPAAHGVLRMVMELDGEVIERVDPHVGLLHRGTEKLIEQKTYLQALPYF 75
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DRLDY +P+ QEH+Y LA+EKLL IE+P R Q +RVL++E+ RI +H+LN+ MDVGA
Sbjct: 76 DRLDYCSPLCQEHSYVLAIEKLLNIEVPERAQYLRVLFAELTRICNHMLNIGAHVMDVGA 135
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD-SFPSAL 184
+TP LW FE RE + F+ERASG+RMH+A+FRPGGVHQD+P +L+ DIG W D F
Sbjct: 136 MTPNLWVFELREDCLNFFERASGARMHSAWFRPGGVHQDVPEKLLVDIGDWLDNRFFQLF 195
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+D L+ NRIFKQRNV+I V +DA WGFSG MIR +G WDLRKSQPY+ Y ++
Sbjct: 196 DDAMSLVMDNRIFKQRNVDIAVVSRDDAVAWGFSGPMIRAAGIPWDLRKSQPYDVYDRME 255
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDIP+G + DCYDR++VR+ E+RES KII+QC+ + GP++++D K+ PPKR +M
Sbjct: 256 FDIPVGTNSDCYDRFMVRVQEVRESAKIIKQCLRDM----PEGPIASTDGKVSPPKRGEM 311
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K+SMESLIHHFKLYTEG+HVP GEVY A E+PKGEFGVYL+SDG NKPYRCKIR ++H
Sbjct: 312 KQSMESLIHHFKLYTEGFHVPAGEVYVATESPKGEFGVYLVSDGTNKPYRCKIRPTAFSH 371
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
LQAM+ + KGH LAD +AILG++D+VFGE DR
Sbjct: 372 LQAMDMMSKGHMLADATAILGAIDVVFGECDR 403
>gi|294624675|ref|ZP_06703345.1| NADH dehydrogenase delta subunit [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292601031|gb|EFF45098.1| NADH dehydrogenase delta subunit [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
Length = 435
Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats.
Identities = 230/419 (54%), Positives = 300/419 (71%), Gaps = 27/419 (6%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K++ R++T+NFGPQHPAAHGVLRLILE+DGE V R DPHIGLLHRGTEKL E+K F Q+V
Sbjct: 19 KQEIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHRGTEKLAESKPFNQSV 78
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DRLDYV+ M EHAY A+E L+GIE P R Q IR ++ EI RI +HL+ V + A+D
Sbjct: 79 PYMDRLDYVSMMCNEHAYVRAIESLMGIEAPERAQYIRTMFDEITRIKNHLMWVGSNALD 138
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE-------------- 168
+GA+ L+ F ERE+LM YE SG+RMHAAY+RPGGV++D+P
Sbjct: 139 LGAMAVMLYAFREREELMDVYEAVSGARMHAAYYRPGGVYRDLPDRMPQYKESRWHKGGA 198
Query: 169 -----------LVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF 217
+++ + + ++FP+ +++ LLT NRI+KQR V++G + + A WG
Sbjct: 199 LKKRNAGREGTMLDFLEEFTNTFPARVDEYETLLTDNRIWKQRTVDVGIISPDLARAWGM 258
Query: 218 SGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCV 277
+G M+RGSG WDLRK QPY Y +DFDIP+G +GDCYDRYLVR+ EMRES +II+QCV
Sbjct: 259 TGPMLRGSGIDWDLRKKQPYAKYDAVDFDIPVGTNGDCYDRYLVRVAEMRESNRIIKQCV 318
Query: 278 NRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPK 337
L GPV ++ K+ PP R MK ME+LIHHFKL++EGY VP GE Y+AVEAPK
Sbjct: 319 KWLKA--NPGPVMVTNFKVAPPSREGMKDDMEALIHHFKLFSEGYCVPAGETYSAVEAPK 376
Query: 338 GEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GEFG YL+SDG NKP+R +RAPG+AHL +M+ + +G+ LADV A++G+ D+VFGEVDR
Sbjct: 377 GEFGCYLMSDGANKPFRVHLRAPGFAHLSSMDAVVRGYLLADVVAMIGTYDLVFGEVDR 435
>gi|78224542|ref|YP_386289.1| NADH dehydrogenase I subunit D [Geobacter metallireducens GS-15]
gi|123570773|sp|Q39QB0|NUOD_GEOMG RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|78195797|gb|ABB33564.1| NADH dehydrogenase subunit D [Geobacter metallireducens GS-15]
Length = 390
Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats.
Identities = 192/391 (49%), Positives = 267/391 (68%), Gaps = 4/391 (1%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ T+N GPQHP+ HGVLRL++ELDGEI++++ PHIG LHRG EKL E +T+ Q +P
Sbjct: 4 TEIMTVNMGPQHPSTHGVLRLVVELDGEIIQKITPHIGYLHRGVEKLSEHRTYHQTIPLT 63
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DRLDY+APM+ Y LAVEKLLGIE+P R Q IRV+ +E+ R+ SHL+ V A+D+GA
Sbjct: 64 DRLDYLAPMHNNLGYVLAVEKLLGIEVPERAQTIRVILAELTRLKSHLVWVACHALDIGA 123
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+T ++ F ERE +M YE+ SG+RM ++YFR GG+ D+ +D+ D+FP +
Sbjct: 124 MTVFIYAFREREMVMSLYEKISGARMTSSYFRVGGLSSDVYDGFEKDVREIVDTFPGHFD 183
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
LLT N I+ R V G + EDA +G +G +RGSG WDLR+ PY Y + F
Sbjct: 184 TYEGLLTKNTIWLNRTVGNGVISAEDAIDYGITGPALRGSGVDWDLRRDNPYSGYEKYQF 243
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+P+G+ D +DRY VR++EMRE+V IIRQ ++ K GPV A P++ P + ++
Sbjct: 244 KVPVGEKCDTFDRYKVRLVEMREAVNIIRQALD----SLKPGPVLADAPQVTYPPKENVY 299
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
++E LIHHFK+ +EG+ VP GEVY VE PKGE G Y++SDGGNKPYR +IR P + +L
Sbjct: 300 NTIEGLIHHFKIASEGFPVPEGEVYQGVENPKGELGYYIVSDGGNKPYRMRIRPPSFVNL 359
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A+E + KG +AD+ A++G+LDIV GE+DR
Sbjct: 360 GAIEKMAKGSMIADLVAVIGTLDIVLGEIDR 390
>gi|296160632|ref|ZP_06843447.1| NADH dehydrogenase I, D subunit [Burkholderia sp. Ch1-1]
gi|295889158|gb|EFG68961.1| NADH dehydrogenase I, D subunit [Burkholderia sp. Ch1-1]
Length = 417
Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats.
Identities = 236/418 (56%), Positives = 300/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL ETKTF+Q+VP
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAETKTFIQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EH Y +A+EKLLGI++P+R Q IRV++ EI R+L+HL+ + A+DV
Sbjct: 62 YMDRLDYVSMMVNEHGYVMAIEKLLGIDVPVRAQYIRVMFDEITRVLNHLMWIGAHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNAKAL 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP +++ LLT NRI+KQR V IG V E A G +
Sbjct: 182 SRMNENRQGSLLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALNLGMT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG WDLRK QPYE Y +LDFDIP+G +GDCYDRYLVR+ EMR+S +I++QC+
Sbjct: 242 GAMLRGSGIEWDLRKKQPYEVYDKLDFDIPVGVNGDCYDRYLVRVEEMRQSTRIVKQCIE 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ PP R MK +ME LIHHFKL+TEG+HVP GE YAAVE PKG
Sbjct: 302 WL--RKNPGPVMVDNHKVAPPSRVGMKSNMEELIHHFKLFTEGFHVPEGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YLISDG NKPYR KIRAPGYAHL ++ + +GH +AD I+G+ DIVFGEVDR
Sbjct: 360 EFGIYLISDGANKPYRLKIRAPGYAHLSTLDEMARGHMIADAVTIIGTQDIVFGEVDR 417
>gi|325983286|ref|YP_004295688.1| NADH dehydrogenase I, D subunit [Nitrosomonas sp. AL212]
gi|325532805|gb|ADZ27526.1| NADH dehydrogenase I, D subunit [Nitrosomonas sp. AL212]
Length = 417
Score = 434 bits (1117), Expect = e-120, Method: Composition-based stats.
Identities = 238/418 (56%), Positives = 305/418 (72%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ R++T+NFGPQHPAAHGVLRL+LELDGE+V R DPHIGLLHR TEKL E KT++Q+VP
Sbjct: 2 AEIRNYTMNFGPQHPAAHGVLRLVLELDGEVVRRADPHIGLLHRATEKLAENKTYIQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY +A+EKLL IE+PIR Q IRV++ EI RIL+HLL + A+DV
Sbjct: 62 YMDRLDYVSMMVNEHAYVMAIEKLLQIEVPIRAQYIRVMFDEITRILNHLLWIGAHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+T L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMTMFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDSMPKYQHSKVHSEKQT 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + + FP+ +++ LLT NRI+KQR V+IG V E A GF+
Sbjct: 182 RVRNENREGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVDIGVVSPERAKALGFT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG WDLRK QPYE Y L+FDIP+G +GDCYDRYL+RM E R+S +II+QCV+
Sbjct: 242 GPMLRGSGVEWDLRKKQPYEVYDRLEFDIPVGVNGDCYDRYLIRMEEFRQSNRIIKQCVD 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + G V + K+ PP R DMK++ME +IHHFKL+TEG+HVP GE Y AVE PKG
Sbjct: 302 WL--RKNPGIVITDNHKVAPPSRVDMKQNMEEMIHHFKLFTEGFHVPPGEAYVAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YL+S+G NKPYR KIRAPG+AHL A++ + +GH ++DV AI+G+ DIVFGE+DR
Sbjct: 360 EFGIYLVSNGANKPYRLKIRAPGFAHLAALDEMSRGHMISDVVAIIGTQDIVFGEIDR 417
>gi|21231957|ref|NP_637874.1| NADH dehydrogenase subunit D [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66767916|ref|YP_242678.1| NADH dehydrogenase subunit D [Xanthomonas campestris pv. campestris
str. 8004]
gi|188991032|ref|YP_001903042.1| NADH dehydrogenase subunit D [Xanthomonas campestris pv. campestris
str. B100]
gi|81306107|sp|Q4UWB5|NUOD_XANC8 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|81793543|sp|Q8P7T5|NUOD_XANCP RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|229891306|sp|B0RRA1|NUOD_XANCB RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|21113688|gb|AAM41798.1| NADH-ubiquinone oxidoreductase NQO4 subunit [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gi|66573248|gb|AAY48658.1| NADH-ubiquinone oxidoreductase NQO4 subunit [Xanthomonas campestris
pv. campestris str. 8004]
gi|167732792|emb|CAP50986.1| NADH-ubiquinone oxidoreductase NQO4 subunit [Xanthomonas campestris
pv. campestris]
Length = 435
Score = 434 bits (1117), Expect = e-120, Method: Composition-based stats.
Identities = 231/419 (55%), Positives = 299/419 (71%), Gaps = 27/419 (6%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K++ R++T+NFGPQHPAAHGVLRLILE+DGE V R DPHIGLLHRGTEKL E+K F Q+V
Sbjct: 19 KQEIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHRGTEKLAESKPFNQSV 78
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DRLDYV+ M EHAY A+E L+GIE P R Q IR ++ EI RI +HL+ V + A+D
Sbjct: 79 PYMDRLDYVSMMCNEHAYVRAIESLMGIEAPERAQYIRTMFDEITRIKNHLMWVGSNALD 138
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE-------------- 168
+GA+ L+ F ERE+LM YE SG+RMHAAY+RPGGV++D+P
Sbjct: 139 LGAMAVMLYAFREREELMDVYEAVSGARMHAAYYRPGGVYRDLPDRMPKYKESRWHKGGA 198
Query: 169 -----------LVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF 217
+++ + + D+FPS +++ LLT NRI+KQR V++G + + A WG
Sbjct: 199 LTKLNAAREGSMLDFLENFTDTFPSRVDEYETLLTENRIWKQRTVDVGIISPDLARAWGM 258
Query: 218 SGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCV 277
+G M+RGSG WDLRK QPY Y +DFD+P+G +GDCYDRYLVR+ EMRES +II+QCV
Sbjct: 259 TGPMLRGSGIEWDLRKKQPYAKYDAVDFDVPVGTNGDCYDRYLVRVAEMRESNRIIKQCV 318
Query: 278 NRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPK 337
L GPV ++ K+ PP R MK ME+LIHHFKL++EGY VP GE Y AVEAPK
Sbjct: 319 KWLKA--NPGPVMVTNFKVAPPSREGMKDDMEALIHHFKLFSEGYCVPAGETYCAVEAPK 376
Query: 338 GEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GEFG YL+SDG NKP+R +RAPG+AHL +M+ + +G+ LADV A++G+ D+VFGEVDR
Sbjct: 377 GEFGCYLMSDGANKPFRVHLRAPGFAHLSSMDAVVRGYLLADVVAMIGTYDLVFGEVDR 435
>gi|209363824|ref|YP_001423959.2| NADH dehydrogenase subunit D [Coxiella burnetii Dugway 5J108-111]
gi|207081757|gb|ABS78327.2| NADH-quinone oxidoreductase chain D [Coxiella burnetii Dugway
5J108-111]
Length = 424
Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats.
Identities = 238/418 (56%), Positives = 295/418 (70%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ R++T NFGPQHPAAHGVLRLI+E+DGE+++R+DPHIGLLHR TEKL E+K + Q +
Sbjct: 9 AEVRNYTFNFGPQHPAAHGVLRLIVEVDGEVIQRIDPHIGLLHRATEKLAESKPYNQTIG 68
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EH Y LA+EKLLGIE PIR + IR ++ EI RIL+HLL + A+DV
Sbjct: 69 YMDRLDYVSMMANEHGYVLAIEKLLGIEPPIRAKYIRTMFDEITRILNHLLWLGAHALDV 128
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+T L+ F ERE LM YE SG+RMHA Y+RPGGV++D+P +
Sbjct: 129 GAMTVFLYCFREREDLMDCYEAVSGARMHATYYRPGGVYRDLPDSMPKYKPSRWHNEKAV 188
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP+ +++ LLT NRI+KQR V IG V E A GF+
Sbjct: 189 KKMNEAREGSLLDFIWDFTARFPNLIDEYESLLTDNRIWKQRTVGIGVVSAERALQLGFT 248
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+R SG WDLRK QPY Y +DFDIPIG+ GDCYDRYLVR+ EMR+S +IIRQCV
Sbjct: 249 GPMLRASGVEWDLRKKQPYAAYDRVDFDIPIGREGDCYDRYLVRIEEMRQSNRIIRQCVE 308
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV D KIVPP+R MKR ME+LIHHFKL+TEGY VP GE YAAVE PKG
Sbjct: 309 WL--RKNPGPVIIDDYKIVPPQREVMKRDMEALIHHFKLFTEGYIVPEGEAYAAVEQPKG 366
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFGVY++SDG NKPYR K+RA Y HL AM +C+GH +AD+ AI+ S+DIVFGE+DR
Sbjct: 367 EFGVYIVSDGANKPYRVKVRAASYPHLAAMNEMCRGHMIADLVAIISSIDIVFGEIDR 424
>gi|170696396|ref|ZP_02887525.1| NADH dehydrogenase I, D subunit [Burkholderia graminis C4D1M]
gi|170138724|gb|EDT06923.1| NADH dehydrogenase I, D subunit [Burkholderia graminis C4D1M]
Length = 417
Score = 434 bits (1116), Expect = e-119, Method: Composition-based stats.
Identities = 237/418 (56%), Positives = 301/418 (72%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL ETKTF+Q+VP
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAETKTFIQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EH Y +A+EKLLGI++P+R Q IRV++ E+ R+L+HL+ + A+DV
Sbjct: 62 YMDRLDYVSMMVNEHGYVMAIEKLLGIDVPVRAQYIRVMFDEVTRVLNHLMWIGAHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNAKAL 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP +++ LLT NRI+KQR V IG V E A G S
Sbjct: 182 SRMNENRQGSLLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQMGMS 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG WDLRK QPYE Y +LDFDIP+G +GDCYDRYLVR+ EMR+S +I++QC+
Sbjct: 242 GAMLRGSGIEWDLRKKQPYEVYEKLDFDIPVGVNGDCYDRYLVRVEEMRQSTRIVKQCIE 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ PP R MK +ME LIHHFKL+TEG+HVP GE YAAVE PKG
Sbjct: 302 WL--RKNPGPVMIDNHKVAPPSRVGMKSNMEELIHHFKLFTEGFHVPEGESYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+YLISDG NKPYR KIRAPGYAHL A++ + +GH +AD I+G+ DIVFGEVDR
Sbjct: 360 EFGIYLISDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEVDR 417
>gi|58582856|ref|YP_201872.1| NADH dehydrogenase subunit D [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|84624721|ref|YP_452093.1| NADH dehydrogenase subunit D [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188577693|ref|YP_001914622.1| NADH dehydrogenase subunit D [Xanthomonas oryzae pv. oryzae PXO99A]
gi|75508124|sp|Q5GXT4|NUOD_XANOR RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|123521396|sp|Q2P0V8|NUOD_XANOM RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|218534467|sp|B2SVL6|NUOD_XANOP RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|58427450|gb|AAW76487.1| NADH-ubiquinone oxidoreductase NQO4 subunit [Xanthomonas oryzae pv.
oryzae KACC10331]
gi|84368661|dbj|BAE69819.1| NADH-ubiquinone oxidoreductase NQO4 subunit [Xanthomonas oryzae pv.
oryzae MAFF 311018]
gi|188522145|gb|ACD60090.1| NADH dehydrogenase i, d subunit [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 435
Score = 434 bits (1116), Expect = e-119, Method: Composition-based stats.
Identities = 230/419 (54%), Positives = 299/419 (71%), Gaps = 27/419 (6%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K++ R++T+NFGPQHPAAHGVLRLILE+DGE V R DPHIGLLHRGTEKL E+K F Q+V
Sbjct: 19 KQEIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHRGTEKLAESKPFNQSV 78
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DRLDYV+ M EHAY A+E L+GIE P R Q IR ++ EI RI +HL+ V + A+D
Sbjct: 79 PYMDRLDYVSMMCNEHAYVRAIESLMGIEAPERAQYIRTMFDEITRIKNHLMWVGSNALD 138
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE-------------- 168
+GA+ L+ F ERE+LM YE SG+RMHAAY+RPGGV++D+P
Sbjct: 139 LGAMAVMLYAFREREELMDVYEAVSGARMHAAYYRPGGVYRDLPDRMPRYKESRWHKGGA 198
Query: 169 -----------LVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF 217
+++ + + ++FP +++ LLT NRI+KQR V++G + + A WG
Sbjct: 199 LKKLNAAREGSMLDFLEDFTNTFPLRVDEYETLLTDNRIWKQRTVDVGIISPDLARAWGM 258
Query: 218 SGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCV 277
+G M+RGSG WDLRK QPY Y +DFDIP+G +GDCYDRYLVR+ EMRES +II+QCV
Sbjct: 259 TGPMLRGSGIEWDLRKKQPYAKYDAVDFDIPVGTNGDCYDRYLVRVAEMRESNRIIKQCV 318
Query: 278 NRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPK 337
L GPV ++ K+ PP R MK ME+LIHHFKL++EGY VP GE Y+AVEAPK
Sbjct: 319 KWLKA--NPGPVMVTNFKVAPPSREGMKDDMEALIHHFKLFSEGYCVPAGETYSAVEAPK 376
Query: 338 GEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GEFG YL+SDG NKP+R +RAPG+AHL +M+ + +G+ LADV A++G+ D+VFGEVDR
Sbjct: 377 GEFGCYLMSDGANKPFRVHLRAPGFAHLSSMDAVVRGYLLADVVAMIGTYDLVFGEVDR 435
>gi|78048406|ref|YP_364581.1| NADH dehydrogenase subunit D [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325924678|ref|ZP_08186116.1| NADH dehydrogenase subunit D [Xanthomonas perforans 91-118]
gi|123584674|sp|Q3BRN2|NUOD_XANC5 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|78036836|emb|CAJ24529.1| NADH-ubiquinone oxidoreductase NQO4 subunit [Xanthomonas campestris
pv. vesicatoria str. 85-10]
gi|325544884|gb|EGD16229.1| NADH dehydrogenase subunit D [Xanthomonas perforans 91-118]
Length = 435
Score = 434 bits (1116), Expect = e-119, Method: Composition-based stats.
Identities = 230/419 (54%), Positives = 300/419 (71%), Gaps = 27/419 (6%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K++ R++T+NFGPQHPAAHGVLRLILE+DGE V R DPHIGLLHRGTEKL E+K F Q+V
Sbjct: 19 KQEIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHRGTEKLAESKPFNQSV 78
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DRLDYV+ M EHAY A+E L+GIE P R Q IR ++ EI RI +HL+ V + A+D
Sbjct: 79 PYMDRLDYVSMMCNEHAYVRAIESLMGIEAPERAQYIRTMFDEITRIKNHLMWVGSNALD 138
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE-------------- 168
+GA+ L+ F ERE+LM YE SG+RMHAAY+RPGGV++D+P
Sbjct: 139 LGAMAVMLYAFREREELMDVYEAVSGARMHAAYYRPGGVYRDLPDRMPQYKESRWHKGGA 198
Query: 169 -----------LVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF 217
+++ + + ++FP+ +++ LLT NRI+KQR V++G + + A WG
Sbjct: 199 LKKRNAGREGTMLDFLEEFTNTFPARVDEYETLLTDNRIWKQRTVDVGIISPDLARAWGM 258
Query: 218 SGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCV 277
+G M+RGSG WDLRK QPY Y +DFDIP+G +GDCYDRYLVR+ EMRES +II+QCV
Sbjct: 259 TGPMLRGSGIEWDLRKKQPYAKYDAVDFDIPVGTNGDCYDRYLVRVAEMRESNRIIKQCV 318
Query: 278 NRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPK 337
L GPV ++ K+ PP R MK ME+LIHHFKL++EGY VP GE Y+AVEAPK
Sbjct: 319 KWLKA--NPGPVMVTNFKVAPPSREGMKDDMEALIHHFKLFSEGYCVPAGETYSAVEAPK 376
Query: 338 GEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GEFG YL+SDG NKP+R +RAPG+AHL +M+ + +G+ LADV A++G+ D+VFGEVDR
Sbjct: 377 GEFGCYLMSDGANKPFRVHLRAPGFAHLSSMDAVVRGYLLADVVAMIGTYDLVFGEVDR 435
>gi|162148808|ref|YP_001603269.1| NADH dehydrogenase subunit D [Gluconacetobacter diazotrophicus PAl
5]
gi|161787385|emb|CAP56980.1| putative NADH-ubiquinone oxidoreductase subunit D
[Gluconacetobacter diazotrophicus PAl 5]
Length = 426
Score = 434 bits (1116), Expect = e-119, Method: Composition-based stats.
Identities = 240/392 (61%), Positives = 307/392 (78%), Gaps = 4/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ S +NFGPQHP+AHGVLRL+LE++GE+V R PHIGLLHRGTEKLIE KT+ +A+PY
Sbjct: 39 EIDSHALNFGPQHPSAHGVLRLVLEMEGEVVARAIPHIGLLHRGTEKLIEYKTYPKALPY 98
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
FDRLDYV+PM +E A+ALA EKLLGI+IP R + IRV+++EI RIL+H+LN+T +D G
Sbjct: 99 FDRLDYVSPMCEEQAFALATEKLLGIDIPDRAKWIRVMFAEITRILNHILNLTALGLDCG 158
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A+TP LWG+EEREKL+ FYE ASG+R HA YFRPGGV +D+P L + I W FP+ +
Sbjct: 159 AVTPALWGYEEREKLIEFYEAASGARFHANYFRPGGVSRDLPAGLEDRIAEWARQFPAWI 218
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+D+ LLT NRI+KQR V IG E A WGFSG +R SG WDLR++QPY+ Y +++
Sbjct: 219 DDLESLLTNNRIWKQRTVGIGIFTTEQALAWGFSGPCLRASGVPWDLRRAQPYDNYDKVE 278
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F+IP+ + GDCYDRYL+R+ EMRESV+I+ QC+ ++ K GP+ D KI PP R +M
Sbjct: 279 FNIPVARQGDCYDRYLIRVAEMRESVRIVEQCLAQM----KPGPIKIQDHKITPPPRREM 334
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
KRSME+LIHHFKL+TEGYHVP G Y AVE+PKGEFGVYL++DG N+PYRCKIR G+AH
Sbjct: 335 KRSMEALIHHFKLFTEGYHVPPGATYTAVESPKGEFGVYLVADGSNRPYRCKIRPTGFAH 394
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
LQA++ + + H LAD AI+GSLD+VFGE+DR
Sbjct: 395 LQAIDEMSRRHMLADAVAIIGSLDLVFGEIDR 426
>gi|166712611|ref|ZP_02243818.1| NADH dehydrogenase subunit D [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 435
Score = 433 bits (1115), Expect = e-119, Method: Composition-based stats.
Identities = 231/419 (55%), Positives = 300/419 (71%), Gaps = 27/419 (6%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K++ R++T+NFGPQHPAAHGVLRLILE+DGE V R DPHIGLLHRGTEKL E+K F Q+V
Sbjct: 19 KQEIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHRGTEKLAESKPFNQSV 78
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DRLDYV+ M EHAY A+E L+GIE P R Q IR ++ EI RI +HL+ V + A+D
Sbjct: 79 PYMDRLDYVSMMCNEHAYVRAIESLMGIEAPERAQYIRTMFDEITRIKNHLMWVGSNALD 138
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE-------------- 168
+GA+ L+ F ERE+LM YE SG+RMHAAY+RPGGV++D+P
Sbjct: 139 LGAMAVMLYAFREREELMDVYEAVSGARMHAAYYRPGGVYRDLPDRMPRYKESRWHKGGA 198
Query: 169 -----------LVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF 217
+++ + + ++FPS +++ LLT NRI+KQR V++G V + A WG
Sbjct: 199 LKKLNAAREGSMLDFLEDFTNTFPSRVDEYETLLTDNRIWKQRTVDVGIVSPDLARAWGM 258
Query: 218 SGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCV 277
+G M+RGSG WDLRK QPY Y ++FDIP+G +GDCYDRYLVR+ EMRES +II+QCV
Sbjct: 259 TGPMLRGSGIEWDLRKKQPYAKYDAVEFDIPVGTNGDCYDRYLVRVAEMRESNRIIKQCV 318
Query: 278 NRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPK 337
L GPV ++ K+ PP R MK ME+LIHHFKL++EGY VP GE Y+AVEAPK
Sbjct: 319 KWLKA--NPGPVMVTNFKVAPPSREGMKDDMEALIHHFKLFSEGYCVPAGETYSAVEAPK 376
Query: 338 GEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GEFG YL+SDG NKP+R +RAPG+AHL +M+ + +G+ LADV A++G+ D+VFGEVDR
Sbjct: 377 GEFGCYLMSDGANKPFRVHLRAPGFAHLSSMDAVVRGYLLADVVAMIGTYDLVFGEVDR 435
>gi|113867073|ref|YP_725562.1| NADH dehydrogenase subunit D [Ralstonia eutropha H16]
gi|122947020|sp|Q0KCS7|NUOD_RALEH RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|113525849|emb|CAJ92194.1| NADH dehydrogenase chain D [Ralstonia eutropha H16]
Length = 417
Score = 433 bits (1115), Expect = e-119, Method: Composition-based stats.
Identities = 233/418 (55%), Positives = 298/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E KT++Q+VP
Sbjct: 2 ADIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTWIQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY +A+E+LLG+E+P+R Q IRV++ EI R+L+HL+ + + A+DV
Sbjct: 62 YMDRLDYVSMMVNEHAYVMAIERLLGLEVPVRAQYIRVMFDEITRLLNHLMWIGSHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE + YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMAVFLYAFREREDMFDMYEAVSGARMHAAYYRPGGVYRDLPDTMPQYRASKVHNERAI 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + + FP +++ LLT NRI+KQR V+IG V E A GF+
Sbjct: 182 KAMNEARSGSLLDFIEDFTNRFPKYVDEYETLLTDNRIWKQRLVDIGVVSPERALQMGFT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG WDLRK QPYE Y +LDFD+P+G GDCY RYLVR+ EMR+S +IIRQCV
Sbjct: 242 GPMLRGSGIEWDLRKKQPYEVYDKLDFDVPVGVGGDCYARYLVRVEEMRQSNRIIRQCVE 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L GPV + K+ PP R DMK +ME LIHHFKL+TEG HVP GE YAAVE PKG
Sbjct: 302 WLRR--NPGPVITDNHKVAPPSRVDMKSNMEELIHHFKLFTEGMHVPEGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+Y ISDG NKPYR KIRAPG+ HL A++ + KGH +AD I+G+ DIVFGE+DR
Sbjct: 360 EFGIYAISDGANKPYRLKIRAPGFPHLAALDEMAKGHMIADAVTIIGTQDIVFGEIDR 417
>gi|11466472|ref|NP_038175.1| NADH dehydrogenase subunit 7 [Chrysodidymus synuroideus]
gi|7110469|gb|AAF36941.1|AF222718_15 NADH dehydrogenase subunit 7 [Chrysodidymus synuroideus]
Length = 398
Score = 433 bits (1115), Expect = e-119, Method: Composition-based stats.
Identities = 245/390 (62%), Positives = 303/390 (77%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
++FTINFGPQHPAAHGVLRLILELDGEI+ DPHIGLLHRGTEKLIE KT+LQA+PYFD
Sbjct: 13 KNFTINFGPQHPAAHGVLRLILELDGEIIVNSDPHIGLLHRGTEKLIEYKTYLQALPYFD 72
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYV+ M QEH Y+LA+EKL+ I+IP R Q+IRVL+ EI R+L+HL+ V A+DVGA+
Sbjct: 73 RLDYVSMMAQEHTYSLAIEKLMNIKIPRRAQIIRVLFCEITRLLNHLVAVGCHALDVGAM 132
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
+P +WGFEEREKLM FYER SG+RMHAAYFRPGGV D+P L++DI + F L++
Sbjct: 133 SPFMWGFEEREKLMEFYERVSGARMHAAYFRPGGVASDLPIGLLDDIFIFIKQFKIRLDE 192
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ ++LT NRI+K+R V+IG V DA WGFSGV++RGSG WDLRKS PYE Y+EL+F
Sbjct: 193 MEEMLTSNRIWKERLVDIGIVSAFDAINWGFSGVLLRGSGVPWDLRKSNPYEIYNELNFS 252
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
P+G +GDCYDRYL+R+ EMR+S+ +I QC+N GP+ ++ K+ P ++K
Sbjct: 253 YPVGTNGDCYDRYLIRIEEMRQSLSLISQCLN----IINDGPIKTTNSKLTSPSLFELKN 308
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
SMESLIHHFK YTEG GE Y A EAPKGEFGVYLIS+ KPYRCKI+APG+ HLQ
Sbjct: 309 SMESLIHHFKYYTEGLIPGFGETYTATEAPKGEFGVYLISNNTEKPYRCKIKAPGFGHLQ 368
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A+ F+ GH +ADV I+G+ DIVFGEVDR
Sbjct: 369 ALNFMASGHMIADVVTIIGTQDIVFGEVDR 398
>gi|94309875|ref|YP_583085.1| NADH dehydrogenase subunit D [Cupriavidus metallidurans CH34]
gi|229891297|sp|Q1LPW0|NUOD_RALME RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|93353727|gb|ABF07816.1| NADH-ubiquinone oxidoreductase D subunit (NADH dehydrogenase
subunit D) [Cupriavidus metallidurans CH34]
Length = 417
Score = 433 bits (1115), Expect = e-119, Method: Composition-based stats.
Identities = 231/418 (55%), Positives = 300/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E KT++Q+VP
Sbjct: 2 ADIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTWIQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY +A+E+LLG+E+PIR Q IRV++ EI R+L+HL+ + + A+DV
Sbjct: 62 YMDRLDYVSMMVNEHAYVMAIERLLGLEVPIRAQYIRVMFDEITRLLNHLMWIGSHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE + YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMAVFLYAFREREDMFDMYEAVSGARMHAAYYRPGGVYRDLPDTMPQYRASKVHNEKAI 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + + FP+ +++ LLT NRI+KQR V+IG V E A GF+
Sbjct: 182 KVMNEARSGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVDIGVVTPERALQMGFT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG WDLRK QPYE Y ++DFDIP+G GDCY RYLVR+ EMR+S +II+QC++
Sbjct: 242 GPMLRGSGIEWDLRKKQPYEVYDKMDFDIPVGTAGDCYSRYLVRVEEMRQSNRIIKQCID 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L GPV + K+ PP R DMK +ME LIHHFKL+TEG HVP GE YAAVE PKG
Sbjct: 302 WLRR--NPGPVITENHKVAPPSRVDMKSNMEELIHHFKLFTEGIHVPAGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+Y ISDG NKPYR KIRAPG+ HL A++ + +GH +AD I+G+ DIVFGE+DR
Sbjct: 360 EFGIYAISDGANKPYRLKIRAPGFVHLAALDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>gi|153207282|ref|ZP_01946046.1| NADH dehydrogenase (ubiquinone), D subunit [Coxiella burnetii 'MSU
Goat Q177']
gi|165918813|ref|ZP_02218899.1| NADH dehydrogenase (ubiquinone), D subunit [Coxiella burnetii RSA
334]
gi|212212185|ref|YP_002303121.1| NADH dehydrogenase subunit D [Coxiella burnetii CbuG_Q212]
gi|212218215|ref|YP_002305002.1| NADH dehydrogenase subunit D [Coxiella burnetii CbuK_Q154]
gi|229891289|sp|B6J697|NUOD_COXB1 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|229891290|sp|B6IZ48|NUOD_COXB2 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|120576770|gb|EAX33394.1| NADH dehydrogenase (ubiquinone), D subunit [Coxiella burnetii 'MSU
Goat Q177']
gi|165917537|gb|EDR36141.1| NADH dehydrogenase (ubiquinone), D subunit [Coxiella burnetii RSA
334]
gi|212010595|gb|ACJ17976.1| NADH-quinone oxidoreductase chain D [Coxiella burnetii CbuG_Q212]
gi|212012477|gb|ACJ19857.1| NADH-quinone oxidoreductase chain D [Coxiella burnetii CbuK_Q154]
Length = 417
Score = 433 bits (1115), Expect = e-119, Method: Composition-based stats.
Identities = 238/418 (56%), Positives = 295/418 (70%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ R++T NFGPQHPAAHGVLRLI+E+DGE+++R+DPHIGLLHR TEKL E+K + Q +
Sbjct: 2 AEVRNYTFNFGPQHPAAHGVLRLIVEVDGEVIQRIDPHIGLLHRATEKLAESKPYNQTIG 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EH Y LA+EKLLGIE PIR + IR ++ EI RIL+HLL + A+DV
Sbjct: 62 YMDRLDYVSMMANEHGYVLAIEKLLGIEPPIRAKYIRTMFDEITRILNHLLWLGAHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+T L+ F ERE LM YE SG+RMHA Y+RPGGV++D+P +
Sbjct: 122 GAMTVFLYCFREREDLMDCYEAVSGARMHATYYRPGGVYRDLPDSMPKYKPSRWHNEKAV 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP+ +++ LLT NRI+KQR V IG V E A GF+
Sbjct: 182 KKMNEAREGSLLDFIWDFTARFPNLIDEYESLLTDNRIWKQRTVGIGVVSAERALQLGFT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+R SG WDLRK QPY Y +DFDIPIG+ GDCYDRYLVR+ EMR+S +IIRQCV
Sbjct: 242 GPMLRASGVEWDLRKKQPYAAYDRVDFDIPIGREGDCYDRYLVRIEEMRQSNRIIRQCVE 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV D KIVPP+R MKR ME+LIHHFKL+TEGY VP GE YAAVE PKG
Sbjct: 302 WL--RKNPGPVMIDDYKIVPPQREVMKRDMEALIHHFKLFTEGYIVPEGEAYAAVEQPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFGVY++SDG NKPYR K+RA Y HL AM +C+GH +AD+ AI+ S+DIVFGE+DR
Sbjct: 360 EFGVYIVSDGANKPYRVKVRAASYPHLAAMNEMCRGHMIADLVAIISSIDIVFGEIDR 417
>gi|88812973|ref|ZP_01128216.1| NADH dehydrogenase delta subunit [Nitrococcus mobilis Nb-231]
gi|88789751|gb|EAR20875.1| NADH dehydrogenase delta subunit [Nitrococcus mobilis Nb-231]
Length = 417
Score = 433 bits (1115), Expect = e-119, Method: Composition-based stats.
Identities = 239/417 (57%), Positives = 300/417 (71%), Gaps = 27/417 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ S+T+NFGPQHPAAHGVLRL+LE+DGE+V RVDPHIGLLHR TEKL ETK F Q++ Y
Sbjct: 3 EISSYTVNFGPQHPAAHGVLRLVLEMDGEVVRRVDPHIGLLHRATEKLAETKPFNQSIGY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDYV+ M EHAY LA+EKLLG+E P+R Q IRVL+ E+ RIL+HLL + A+DVG
Sbjct: 63 MDRLDYVSMMCNEHAYVLAIEKLLGLEPPLRAQYIRVLFDELTRILNHLLWLGAHALDVG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE---------------- 168
A+T L+ F +RE LM YE SG+RMHA Y+RPGGV++D+P
Sbjct: 123 AMTVFLYCFAKREDLMDCYEAVSGTRMHATYYRPGGVYRDLPMRMPHYQPSPKRSQKDLE 182
Query: 169 ---------LVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
+++ I + FP +++ LLT NRI+KQR V++ V E A GF+G
Sbjct: 183 RLNRARQGSMLDYIEHFAAEFPHCIDEYETLLTDNRIWKQRLVDVAVVDPERALQLGFTG 242
Query: 220 VMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR 279
M+RGSG WDLRK QPY Y +L FDIP+G +GDCYDRYLVR+ EMR+SV++I QCV+
Sbjct: 243 PMLRGSGVEWDLRKKQPYAVYDQLAFDIPVGTNGDCYDRYLVRVEEMRQSVRLITQCVDW 302
Query: 280 LLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGE 339
L + GPV +D K+ PP R +MK MESLIHHFKL+TEGY VP GE YAAVEAPKGE
Sbjct: 303 L--RANPGPVMVADHKVAPPSREEMKDDMESLIHHFKLFTEGYCVPEGEAYAAVEAPKGE 360
Query: 340 FGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
FG Y++SDG NKPYR K+RAPG+AHL AM+ + +GH LADV I+G+LD+VFGE+DR
Sbjct: 361 FGAYIVSDGANKPYRLKLRAPGFAHLAAMDEMSRGHMLADVVTIIGTLDVVFGEIDR 417
>gi|324309725|gb|ADY18506.1| NADH dehydrogenase subunit 7 [Phaeodactylum tricornutum]
Length = 398
Score = 433 bits (1115), Expect = e-119, Method: Composition-based stats.
Identities = 238/389 (61%), Positives = 306/389 (78%), Gaps = 4/389 (1%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
+FTINFGPQHPAAHGVLRL+LEL GE V + +PHIGLLHRGTEKLIE K +LQA+PYFDR
Sbjct: 14 NFTINFGPQHPAAHGVLRLLLELVGETVIKANPHIGLLHRGTEKLIEYKNYLQALPYFDR 73
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
LDYV+ + QEH+Y LA+E L+ ++IP R + IRV+++EI RIL+HLL V AMDVGA+T
Sbjct: 74 LDYVSMLAQEHSYCLAIENLINVKIPERAKYIRVIFAEITRILNHLLAVGCHAMDVGAMT 133
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
P LW FEEREKLM FYER SG+RMHAAYFRPGGV+ D+P LV DI + + F + L +I
Sbjct: 134 PMLWAFEEREKLMEFYERVSGARMHAAYFRPGGVYSDLPLGLVSDIYIFIEQFTNKLIEI 193
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
++LT NRI+KQR +++GT+ ++A +GFSGVM+RGSG WDLRKSQPYE Y ++ F++
Sbjct: 194 EEMLTDNRIWKQRLIDVGTINAKEALNFGFSGVMLRGSGINWDLRKSQPYEIYDQISFEV 253
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
P G GDCYDRYL+R++EM++S+ I+ QC+++L G + D K PP + ++K+S
Sbjct: 254 PTGTSGDCYDRYLIRVIEMKQSLSIVLQCLDKL----PSGIIKTEDTKSCPPTKFEVKQS 309
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
ME+LIHHFK+YT G +P E Y EAPKGEFGVYLIS+ NKPYRCKI+APG+AHLQA
Sbjct: 310 MEALIHHFKMYTNGLSIPANETYIGTEAPKGEFGVYLISNNTNKPYRCKIKAPGFAHLQA 369
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ ++ KGH +ADV I+G+ DIVFGEVDR
Sbjct: 370 LNYMSKGHLIADVVTIIGTQDIVFGEVDR 398
>gi|21243429|ref|NP_643011.1| NADH dehydrogenase subunit D [Xanthomonas axonopodis pv. citri str.
306]
gi|81801046|sp|Q8PJ43|NUOD_XANAC RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|21108982|gb|AAM37547.1| NADH-ubiquinone oxidoreductase NQO4 subunit [Xanthomonas axonopodis
pv. citri str. 306]
Length = 435
Score = 433 bits (1115), Expect = e-119, Method: Composition-based stats.
Identities = 229/419 (54%), Positives = 300/419 (71%), Gaps = 27/419 (6%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K++ R++T+NFGPQHPAAHGVLRLILE+DGE V R DPHIGLLHRGTEKL E+K F Q+V
Sbjct: 19 KQEIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHRGTEKLAESKPFNQSV 78
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DRLDYV+ M EHAY A+E L+GI+ P R Q IR ++ EI RI +HL+ V + A+D
Sbjct: 79 PYMDRLDYVSMMCNEHAYVRAIESLMGIQAPERAQYIRTMFDEITRIKNHLMWVGSNALD 138
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE-------------- 168
+GA+ L+ F ERE+LM YE SG+RMHAAY+RPGGV++D+P
Sbjct: 139 LGAMAVMLYAFREREELMDVYEAVSGARMHAAYYRPGGVYRDLPDRMPQYKESRWHKGGA 198
Query: 169 -----------LVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF 217
+++ + + ++FP+ +++ LLT NRI+KQR V++G + + A WG
Sbjct: 199 LKKRNAGREGTMLDFLEEFTNTFPARVDEYETLLTDNRIWKQRTVDVGIISPDLARAWGM 258
Query: 218 SGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCV 277
+G M+RGSG WDLRK QPY Y +DFDIP+G +GDCYDRYLVR+ EMRES +II+QCV
Sbjct: 259 TGPMLRGSGIEWDLRKKQPYAKYDAVDFDIPVGTNGDCYDRYLVRVAEMRESNRIIKQCV 318
Query: 278 NRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPK 337
L GPV ++ K+ PP R MK ME+LIHHFKL++EGY VP GE Y+AVEAPK
Sbjct: 319 KWLKA--NPGPVMVTNFKVAPPSREGMKDDMEALIHHFKLFSEGYCVPAGETYSAVEAPK 376
Query: 338 GEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GEFG YL+SDG NKP+R +RAPG+AHL +M+ + +G+ LADV A++G+ D+VFGEVDR
Sbjct: 377 GEFGCYLMSDGANKPFRVHLRAPGFAHLSSMDAVVRGYLLADVVAMIGTYDLVFGEVDR 435
>gi|197120284|ref|YP_002140711.1| NADH dehydrogenase I subunit D [Geobacter bemidjiensis Bem]
gi|218534407|sp|B5EFG0|NUOD_GEOBB RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|197089644|gb|ACH40915.1| NADH dehydrogenase I, D subunit [Geobacter bemidjiensis Bem]
Length = 389
Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats.
Identities = 191/391 (48%), Positives = 270/391 (69%), Gaps = 4/391 (1%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
S T+N GPQHP+ HGVLRL++ELDGE+++++ PHIG LHRG EKL E +T+ QA+P
Sbjct: 3 SEIMTLNMGPQHPSTHGVLRLVVELDGEVIQKITPHIGYLHRGIEKLSEHRTYHQALPLT 62
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DR+DY+APM+ Y LAVEKLLGIE+P R + IRV+ +E+ R+ SHL+ + A+D+GA
Sbjct: 63 DRMDYLAPMHNNLGYVLAVEKLLGIEVPERAETIRVIMAELTRLKSHLVWIACHALDIGA 122
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+T ++ F EREK+M YE SG+RM + YFR GG+ +D+P + D+FP +
Sbjct: 123 MTVFIYAFREREKIMELYEMVSGARMTSNYFRVGGLSRDLPAGFESAVQEILDTFPGHFD 182
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
LLT N I+ QR + G + +DA +G SG +RGSG +DLR+ PY Y + DF
Sbjct: 183 TYEGLLTKNTIWLQRTIGNGVISADDAIDFGISGPALRGSGVDFDLRRDLPYSGYEKYDF 242
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+P+G++ D +DRY VR++EMRE+VKII Q + RL K GP+ A P++ P + +
Sbjct: 243 KVPVGENCDTFDRYKVRLVEMREAVKIIDQAMKRL----KPGPILADAPQVCYPPKESVY 298
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
S+E LIHHFK+ +EG+ VP GEVY VE PKGE G Y++SDGG+KPYR ++R P + +L
Sbjct: 299 NSIEGLIHHFKIASEGFPVPEGEVYQGVENPKGELGYYMVSDGGSKPYRMRVRPPSFVNL 358
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A+E + KG +AD+ A++G+LDIV GE+DR
Sbjct: 359 GAIEKMAKGSMIADLVAVIGTLDIVLGEIDR 389
>gi|114321116|ref|YP_742799.1| NADH dehydrogenase subunit D [Alkalilimnicola ehrlichii MLHE-1]
gi|122311305|sp|Q0A778|NUOD_ALHEH RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|114227510|gb|ABI57309.1| NADH dehydrogenase subunit D [Alkalilimnicola ehrlichii MLHE-1]
Length = 417
Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats.
Identities = 236/418 (56%), Positives = 303/418 (72%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
++ +S+T+NFGPQHPAAHGVLR++LE++GE V R DPHIGLLHR TEKL E+K + Q++
Sbjct: 2 REFKSYTVNFGPQHPAAHGVLRMVLEMEGETVRRADPHIGLLHRATEKLAESKPYNQSIG 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ + EHAY +A+EKLLGIE PIR Q IRV++ EI RIL+HL+ + +DV
Sbjct: 62 YMDRLDYVSMLCNEHAYVMAIEKLLGIEAPIRAQYIRVMFDEITRILNHLMWLGAHGLDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE--------------- 168
GA+T L+ F ERE LM YE SG+RMHAAY+RPGGV++D+P
Sbjct: 122 GAMTAFLYCFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPESMPKYEPSKFRSKKEL 181
Query: 169 ----------LVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
+++ I + + FP +++ LLT NRI++QR V++G V E A GFS
Sbjct: 182 ELMNAARQGTMLDFIEDFTERFPGCVDEYETLLTENRIWRQRLVDVGVVSPERALQLGFS 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG WDLRK QPY+ Y ++FDIP+G +GDCYDRYLVR+ EMR+S +II+QCV+
Sbjct: 242 GPMLRGSGIEWDLRKKQPYDVYDRVEFDIPVGTNGDCYDRYLVRIEEMRQSNRIIKQCVD 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L ++ GPV D K+ PP R +MK MESLIHHFKL+TEGY P GEVYAAVEAPKG
Sbjct: 302 WL--RHNPGPVMLEDHKVAPPSREEMKDDMESLIHHFKLFTEGYTTPPGEVYAAVEAPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG Y+ISDG NKPYR K+RAPG+AHL AM+ + +GH LADV AI+G+ DIVFGE+DR
Sbjct: 360 EFGCYMISDGANKPYRVKLRAPGFAHLSAMDEMARGHMLADVVAIIGTQDIVFGEIDR 417
>gi|325921408|ref|ZP_08183265.1| NADH dehydrogenase subunit D [Xanthomonas gardneri ATCC 19865]
gi|325548166|gb|EGD19163.1| NADH dehydrogenase subunit D [Xanthomonas gardneri ATCC 19865]
Length = 435
Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats.
Identities = 231/419 (55%), Positives = 299/419 (71%), Gaps = 27/419 (6%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K++ R++T+NFGPQHPAAHGVLRLILE+DGE V R DPHIGLLHRGTEKL E+K F Q+V
Sbjct: 19 KQEIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHRGTEKLAESKPFNQSV 78
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DRLDYV+ M EHAY A+E L+GIE P R Q IR ++ EI RI +HL+ + + A+D
Sbjct: 79 PYMDRLDYVSMMCNEHAYVRAIESLMGIEAPERAQYIRTMFDEITRIKNHLMWLGSNALD 138
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE-------------- 168
+GA+ L+ F ERE+LM YE SG+RMHAAY+RPGGV++D+P
Sbjct: 139 LGAMAVMLYAFREREELMDVYEAVSGARMHAAYYRPGGVYRDLPDRMPKYKESRWHKGGA 198
Query: 169 -----------LVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF 217
+++ + + ++FPS +++ LLT NRI+KQR V++G + E A WG
Sbjct: 199 LKKLNAAREGSMLDFLEDFTNTFPSRVDEYETLLTDNRIWKQRTVDVGIISPELARAWGM 258
Query: 218 SGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCV 277
+G M+RGSG WDLRK QPY Y +DFDIP+G +GDCYDRYLVR+ EMRES +II+QCV
Sbjct: 259 TGPMLRGSGIEWDLRKKQPYAKYDAVDFDIPVGTNGDCYDRYLVRVAEMRESNRIIKQCV 318
Query: 278 NRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPK 337
L GPV ++ K+ PP R MK ME+LIHHFKL++EGY VP GE Y AVEAPK
Sbjct: 319 TWLKA--NPGPVMVTNFKVAPPSREGMKDDMEALIHHFKLFSEGYCVPAGETYCAVEAPK 376
Query: 338 GEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GEFG YL+SDG NKP+R +RAPG+AHL +M+ + +G+ LADV A++G+ D+VFGEVDR
Sbjct: 377 GEFGCYLMSDGANKPFRLHLRAPGFAHLSSMDAVVRGYLLADVVAMIGTYDLVFGEVDR 435
>gi|30249734|ref|NP_841804.1| NADH dehydrogenase subunit D [Nitrosomonas europaea ATCC 19718]
gi|75540324|sp|Q82TU6|NUOD_NITEU RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|30180771|emb|CAD85685.1| NADH-ubiquinone oxidoreductase 49Kd chain [Nitrosomonas europaea
ATCC 19718]
Length = 417
Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats.
Identities = 238/418 (56%), Positives = 303/418 (72%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ R++T+NFGPQHPAAHGVLRL++ELDGE++ R DPHIGLLHR TEKL E KT++Q+VP
Sbjct: 2 AEIRNYTMNFGPQHPAAHGVLRLVMELDGEVIRRADPHIGLLHRATEKLAENKTYVQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY +A+EKLL IE+PIR Q IRV++ EI RIL+HLL + A+DV
Sbjct: 62 YMDRLDYVSMMVNEHAYVMAIEKLLQIEVPIRAQYIRVMFDEITRILNHLLWLGAHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+T L+ F ERE LM YE SG+R+HAAY+RPGGV++D+P +
Sbjct: 122 GAMTVFLYAFREREDLMDCYEAVSGARLHAAYYRPGGVYRDLPDNMPQYQPSAIHDEKAT 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP ++D LLT NRI+KQR V+IG V + A GF+
Sbjct: 182 RARNENRQGSLLDFIEDFTRRFPGYIDDYEALLTDNRIWKQRLVDIGVVSPDRAKALGFT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG WDLRK QPYE Y ++DFDIP+G +GDCYDRYLVR+ EMR+S II+QCV
Sbjct: 242 GPMLRGSGVEWDLRKKQPYEVYDQVDFDIPVGANGDCYDRYLVRIEEMRQSNHIIKQCVE 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + K+ PP R MK++ME +IHHFKL+TEG HVP GE YAAVE PKG
Sbjct: 302 WL--RKNPGPVITDNHKVAPPSRLAMKQNMEEMIHHFKLFTEGMHVPRGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+Y++SDG NKPYR KIRAPG+AHL A++ + KGH +AD+ AI+G+ DIVFGE+DR
Sbjct: 360 EFGIYIVSDGANKPYRLKIRAPGFAHLAALDEMTKGHMIADLVAIIGTQDIVFGEIDR 417
>gi|229891498|sp|A9KBK7|NUOD_COXBN RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
Length = 417
Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats.
Identities = 238/418 (56%), Positives = 295/418 (70%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ R++T NFGPQHPAAHGVLRLI+E+DGE+++R+DPHIGLLHR TEKL E+K + Q +
Sbjct: 2 AEVRNYTFNFGPQHPAAHGVLRLIVEVDGEVIQRIDPHIGLLHRATEKLAESKPYNQTIG 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EH Y LA+EKLLGIE PIR + IR ++ EI RIL+HLL + A+DV
Sbjct: 62 YMDRLDYVSMMANEHGYVLAIEKLLGIEPPIRAKYIRTMFDEITRILNHLLWLGAHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+T L+ F ERE LM YE SG+RMHA Y+RPGGV++D+P +
Sbjct: 122 GAMTVFLYCFREREDLMDCYEAVSGARMHATYYRPGGVYRDLPDSMPKYKPSRWHNEKAV 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP+ +++ LLT NRI+KQR V IG V E A GF+
Sbjct: 182 KKMNEAREGSLLDFIWDFTARFPNLIDEYESLLTDNRIWKQRTVGIGVVSAERALQLGFT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+R SG WDLRK QPY Y +DFDIPIG+ GDCYDRYLVR+ EMR+S +IIRQCV
Sbjct: 242 GPMLRASGVEWDLRKKQPYAAYDRVDFDIPIGREGDCYDRYLVRIEEMRQSNRIIRQCVE 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV D KIVPP+R MKR ME+LIHHFKL+TEGY VP GE YAAVE PKG
Sbjct: 302 WL--RKNPGPVIIDDYKIVPPQREVMKRDMEALIHHFKLFTEGYIVPEGEAYAAVEQPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFGVY++SDG NKPYR K+RA Y HL AM +C+GH +AD+ AI+ S+DIVFGE+DR
Sbjct: 360 EFGVYIVSDGANKPYRVKVRAASYPHLAAMNEMCRGHMIADLVAIISSIDIVFGEIDR 417
>gi|254468716|ref|ZP_05082122.1| NADH dehydrogenase (quinone), D subunit [beta proteobacterium KB13]
gi|207087526|gb|EDZ64809.1| NADH dehydrogenase (quinone), D subunit [beta proteobacterium KB13]
Length = 417
Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats.
Identities = 231/418 (55%), Positives = 303/418 (72%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL E +T++Q+VP
Sbjct: 2 AEIKNYTMNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAENRTYIQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHA+ +A+EK+L +++P+R Q IRVL+ EI R+L+HLL + A+DV
Sbjct: 62 YMDRLDYVSMMMNEHAFVMAIEKMLNLKVPVRAQYIRVLFDEITRLLNHLLWLGCHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA++ L+ F ERE L YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 122 GAMSVFLYTFREREDLFDCYEAVSGARMHAAYYRPGGVYRDLPDHMPQYQNTRFSRPSET 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP +++ LLT NRI+KQR V IG V E A GF+
Sbjct: 182 HKLNENRQGSLLDFIEDFATRFPGYIDEYETLLTDNRIWKQRTVGIGVVSPERAIELGFT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG WDLRK QPYE Y +LDFDIP+G GDCYDRYLVR+ EMR+SV +I+QC
Sbjct: 242 GPMLRGSGIEWDLRKKQPYEVYDKLDFDIPVGVEGDCYDRYLVRIEEMRQSVHLIKQCTK 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + + K PPKR DMK MES+IHHFKL+TEG+H+P GE YAAVE PKG
Sbjct: 302 WL--RENSGPVISDNQKFAPPKRTDMKEDMESMIHHFKLFTEGFHLPKGEAYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+Y++SDG NKPYR KIRAPG+AHL +++ + KGH ++D+ AI+G+ DIVFGE+DR
Sbjct: 360 EFGIYMVSDGANKPYRLKIRAPGFAHLASLDEMTKGHMISDLVAIIGTQDIVFGEIDR 417
>gi|198423297|ref|XP_002122965.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein
2 [Ciona intestinalis]
Length = 471
Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats.
Identities = 231/392 (58%), Positives = 302/392 (77%), Gaps = 4/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K + T+NFGPQHPAAHGVLRLILEL GE+V R DPHIGLLHR TEKL+E KT++Q +PY
Sbjct: 84 KLDTLTLNFGPQHPAAHGVLRLILELAGEVVIRADPHIGLLHRATEKLMEYKTYIQGLPY 143
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
FDRLDYV+ M E Y+LA+E+L+GI P R Q IRV ++E RIL+H++ +TT A+DVG
Sbjct: 144 FDRLDYVSMMVNEQCYSLAIERLMGITAPPRAQWIRVFFAEQTRILNHIMGITTHALDVG 203
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A+TP W EEREK+M FYER SG+RMHAAY RPGGV QD+P L++D+ W F + +
Sbjct: 204 AMTPFFWLMEEREKMMEFYERVSGARMHAAYVRPGGVSQDLPLGLMDDVYDWAIRFSARV 263
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+++ ++L+ NRI++ R V++G + E A WG SGV++RGSG WDLRK+QPY+ Y +++
Sbjct: 264 DELEEMLSENRIWRTRTVDVGLITAEQALNWGCSGVVLRGSGIKWDLRKTQPYDAYDQVE 323
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FD+PIG GD YDRYL R+ EMR+S++II+QC+N++ G + D K+ PP R+ M
Sbjct: 324 FDVPIGTRGDTYDRYLCRVEEMRQSLRIIQQCLNKM----PEGEIKVDDNKLNPPTRSQM 379
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K SME++IHHFKL+TEG+ VP G Y AVEAPKGEFGVYL+SDG +KPYRCKI+APG+AH
Sbjct: 380 KDSMEAVIHHFKLFTEGFQVPAGSTYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAH 439
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
L +E + G QL DV A++G+LDIVFGEVDR
Sbjct: 440 LATIEHVAPGLQLPDVVALIGTLDIVFGEVDR 471
>gi|257095316|ref|YP_003168957.1| NADH dehydrogenase subunit D [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
gi|257047840|gb|ACV37028.1| NADH dehydrogenase I, D subunit [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 417
Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats.
Identities = 239/417 (57%), Positives = 298/417 (71%), Gaps = 27/417 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ R+FT+NFGPQHPAAHGVLR++LELDGE+V R DPHIGLLHR TEKL ETKT++Q+VPY
Sbjct: 3 ELRNFTLNFGPQHPAAHGVLRMVLELDGEVVMRADPHIGLLHRATEKLAETKTWIQSVPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDY++ M EHAY +A+E+LL IE+PIR Q IRV++ EI RIL+HLL V +DVG
Sbjct: 63 MDRLDYMSMMCNEHAYCMAIERLLQIEVPIRAQYIRVMFDEITRILNHLLWVGCHGLDVG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL--------------- 169
A+T L+ F ERE L+ YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 123 AMTMVLYAFREREDLVDAYEAVSGARMHAAYYRPGGVYRDLPDRMAQYKESKWKSAAQIK 182
Query: 170 ----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
++ + + FP L++ LLT NRI+KQR V++G V E A GF+G
Sbjct: 183 PFNEARGGSLLDFLDDFSSRFPKLLDEYETLLTDNRIWKQRLVDVGIVTPERALQRGFTG 242
Query: 220 VMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR 279
M+RGSG AWDLRK QPYE Y +DFDIP+GK GD YDRYLVRM EMR+S +I++QC++
Sbjct: 243 PMLRGSGIAWDLRKKQPYEVYDRVDFDIPVGKTGDSYDRYLVRMEEMRQSNRILKQCIDW 302
Query: 280 LLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGE 339
L + GPV + + K+ P R MK +ME LIHHFKL TEG HVP GEVY+AVE PKGE
Sbjct: 303 L--RQNPGPVMSDNHKVAAPSREAMKSNMEELIHHFKLCTEGMHVPEGEVYSAVEHPKGE 360
Query: 340 FGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
FG+Y+ISDG NKPYR KIR PGY HL AM + GH LADV I+GS D+VFGE+DR
Sbjct: 361 FGIYVISDGANKPYRLKIRPPGYVHLSAMNEMVCGHMLADVVTIIGSQDVVFGEIDR 417
>gi|89900289|ref|YP_522760.1| NADH dehydrogenase subunit D [Rhodoferax ferrireducens T118]
gi|122479523|sp|Q21YC4|NUOD_RHOFD RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|89345026|gb|ABD69229.1| NADH dehydrogenase I, D subunit [Rhodoferax ferrireducens T118]
Length = 417
Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats.
Identities = 238/418 (56%), Positives = 299/418 (71%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRL+LELDGE+++R DPHIGLLHR TEKL ETKT++QA+P
Sbjct: 2 AEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAETKTYIQALP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDY++ M E AY LAVEK+LG+E+PIR + IRV+++EI R+L+HLL V A+D
Sbjct: 62 YMDRLDYMSMMCNESAYCLAVEKMLGLEVPIRAKYIRVMFAEITRLLNHLLCVGAGALDC 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+T L+ F ERE L+ YE SG+RMHAAYFRPGGV++D+P +
Sbjct: 122 GAMTVMLYAFREREDLLDMYEAVSGARMHAAYFRPGGVYRDLPDTMARHQPNKIRSAKST 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP+ L + LLT NRI+KQR V IG V E A GFS
Sbjct: 182 EKLNRNRDGSLLDFIDDFTQRFPTYLGEYHTLLTDNRIWKQRTVGIGVVTAERALNLGFS 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG AWDLRK QPYE Y LDFDIP+GK GDCYDRYLVRM EM++S +II+QCV+
Sbjct: 242 GPMLRGSGVAWDLRKKQPYEIYDRLDFDIPVGKTGDCYDRYLVRMEEMKQSNRIIKQCVD 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV + KI PP R MK +ME LIHHFKL++EG+ VP GE YA +E PKG
Sbjct: 302 WL--RVNPGPVITDNHKIAPPNRESMKSNMEELIHHFKLFSEGFSVPEGEAYATIEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+Y++SDG NKPYR KIR P + HL A+ + +GH + D AI+GSLDIVFGEVDR
Sbjct: 360 EFGIYMVSDGANKPYRMKIRPPAFVHLAALGEMGRGHMIGDAVAIIGSLDIVFGEVDR 417
>gi|29654736|ref|NP_820428.1| NADH dehydrogenase subunit D [Coxiella burnetii RSA 493]
gi|161831608|ref|YP_001597290.1| NADH dehydrogenase subunit D [Coxiella burnetii RSA 331]
gi|81722522|sp|Q83BQ8|NUOD_COXBU RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|229891386|sp|A9N8X0|NUOD_COXBR RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|29542004|gb|AAO90942.1| NADH-quinone oxidoreductase chain D [Coxiella burnetii RSA 493]
gi|161763475|gb|ABX79117.1| NADH dehydrogenase (ubiquinone), D subunit [Coxiella burnetii RSA
331]
Length = 417
Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats.
Identities = 237/418 (56%), Positives = 294/418 (70%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ R++T NFGPQHPAAHGVLRLI+E+DGE+++R+DPHIGLLHR TEKL E+K + Q +
Sbjct: 2 AEVRNYTFNFGPQHPAAHGVLRLIVEVDGEVIQRIDPHIGLLHRATEKLAESKPYNQTIG 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EH Y LA+EKLLGIE PIR + IR ++ EI RIL+HLL + A+DV
Sbjct: 62 YMDRLDYVSMMANEHGYVLAIEKLLGIEPPIRAKYIRTMFDEITRILNHLLWLGAHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+T L+ F ERE LM YE SG+RMHA Y+RPGGV++D+P +
Sbjct: 122 GAMTVFLYCFREREDLMDCYEAVSGARMHATYYRPGGVYRDLPDSMPKYKPSRWHNEKAV 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP+ +++ LLT NRI+KQR V IG V E A GF+
Sbjct: 182 KKMNEAREGSLLDFIWDFTARFPNLIDEYESLLTDNRIWKQRTVGIGVVSAERALQLGFT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+R SG WDLRK QPY Y +DFDIPIG+ GDCYDRYLVR+ EMR+S +IIRQCV
Sbjct: 242 GPMLRASGVEWDLRKKQPYAAYDRVDFDIPIGREGDCYDRYLVRIEEMRQSNRIIRQCVE 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + G V D KIVPP+R MKR ME+LIHHFKL+TEGY VP GE YAAVE PKG
Sbjct: 302 WL--RKNPGSVMIDDYKIVPPQREVMKRDMEALIHHFKLFTEGYIVPEGEAYAAVEQPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFGVY++SDG NKPYR K+RA Y HL AM +C+GH +AD+ AI+ S+DIVFGE+DR
Sbjct: 360 EFGVYIVSDGANKPYRVKVRAASYPHLAAMNEMCRGHMIADLVAIISSIDIVFGEIDR 417
>gi|149184635|ref|ZP_01862953.1| NADH-quinone oxidoreductase chain D [Erythrobacter sp. SD-21]
gi|148831955|gb|EDL50388.1| NADH-quinone oxidoreductase chain D [Erythrobacter sp. SD-21]
Length = 405
Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats.
Identities = 247/395 (62%), Positives = 312/395 (78%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++TINFGPQHPAAHGVLR+++ELDGEI+ERVDPH+GLLHRGTEKLIE KT+LQA+
Sbjct: 15 DETITNYTINFGPQHPAAHGVLRMVMELDGEIIERVDPHVGLLHRGTEKLIEHKTYLQAL 74
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDY +P+ QE++Y LA+EKLL +E+P R Q IRVL++E+ RI +H+LN+ MD
Sbjct: 75 PYFDRLDYCSPLAQEYSYVLAIEKLLNVEVPERAQYIRVLFAELTRICNHMLNIGAHVMD 134
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD-SFP 181
VGA+TP LW FE RE + F+ER SG+RMH AY RPGGVHQD+P +L+ DIG W D P
Sbjct: 135 VGAMTPNLWVFELREDCLNFFERMSGARMHHAYLRPGGVHQDVPEKLLVDIGEWLDTRLP 194
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
D L+ NRIFKQRNV+I V +DA WGFSG MIR +G WDLRKSQPY+ Y
Sbjct: 195 ELFGDAMSLVLDNRIFKQRNVDIAVVSKDDAVAWGFSGPMIRAAGVPWDLRKSQPYDVYD 254
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
++FDIP+G + DCYDR++VR+ E+ ES KI++QC+ + GP+++ D K+ PPKR
Sbjct: 255 RMEFDIPVGTNSDCYDRFVVRVKEVYESAKIMKQCLRDM----PTGPIASYDRKVSPPKR 310
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
A+MK+SME+LIHHFKLYTEG+HVP GEVY A E+PKGEFGVYL+SDG NKPYRCKIR
Sbjct: 311 AEMKQSMEALIHHFKLYTEGFHVPAGEVYVATESPKGEFGVYLVSDGSNKPYRCKIRPTA 370
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++HLQAM+F+CKGH L D +AILG++D+VFGE DR
Sbjct: 371 FSHLQAMDFMCKGHMLPDATAILGAIDVVFGECDR 405
>gi|294011310|ref|YP_003544770.1| NADH dehydrogenase I chain D [Sphingobium japonicum UT26S]
gi|292674640|dbj|BAI96158.1| NADH dehydrogenase I chain D [Sphingobium japonicum UT26S]
Length = 411
Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats.
Identities = 254/397 (63%), Positives = 317/397 (79%), Gaps = 5/397 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + +++TINFGPQHPAAHGVLRL++ELDGEIVER DPH+GLLHRGTEKLIE KT+LQ
Sbjct: 19 LGDTEIQNYTINFGPQHPAAHGVLRLVMELDGEIVERCDPHVGLLHRGTEKLIEHKTYLQ 78
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDY +PM EH+Y LAVEKLL +E+PIR Q +RV ++E+ RI +H+LN+ +
Sbjct: 79 ALPYFDRLDYCSPMGMEHSYVLAVEKLLNLEVPIRAQYLRVFFAELTRIKNHMLNLGSHV 138
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD-S 179
MDVGA+TP LW FE RE M FYERASG+RMHAAYFRPGGVHQD+P +L+ DI W D
Sbjct: 139 MDVGAMTPNLWLFELREDCMNFYERASGARMHAAYFRPGGVHQDVPLKLLTDIADWLDTR 198
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
P D L+ NRIFKQRNV+I V EDA WGFSG M+RGSG AWDLRK+QPY+
Sbjct: 199 LPRLFEDAISLVADNRIFKQRNVDIAVVSKEDALKWGFSGPMLRGSGIAWDLRKAQPYDV 258
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y ++FDIP+G + DCYDR++VR+ E+R+S +I++QC+ ++ GPV + D K+ PP
Sbjct: 259 YDRMEFDIPVGTNFDCYDRFMVRVEEVRQSARIMKQCLAQM----PEGPVLSLDTKVAPP 314
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
KR +MKRSME+LIHHFKLYTEG+HVP GEVY A E+PKGEFGVYL++DG NKPYRCKIR
Sbjct: 315 KRGEMKRSMEALIHHFKLYTEGFHVPAGEVYVATESPKGEFGVYLVADGSNKPYRCKIRP 374
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++HLQAM+F+ KGH LAD +A+LG++DIVFGE DR
Sbjct: 375 TAFSHLQAMDFMMKGHMLADTTAVLGAMDIVFGECDR 411
>gi|260574761|ref|ZP_05842764.1| NADH dehydrogenase I, D subunit [Rhodobacter sp. SW2]
gi|259023178|gb|EEW26471.1| NADH dehydrogenase I, D subunit [Rhodobacter sp. SW2]
Length = 411
Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats.
Identities = 274/394 (69%), Positives = 329/394 (83%), Gaps = 3/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ R+F INFGPQHPAAHGVLRL+LELDGEIVER DPHIGLLHRGTEKL+E++T+LQ +
Sbjct: 21 EQRIRNFNINFGPQHPAAHGVLRLVLELDGEIVERADPHIGLLHRGTEKLMESRTYLQNL 80
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DRLDYVAPMNQEHAY LA+E+L G IP R LIRVL+SEIGR+L+HL+NVTT AMD
Sbjct: 81 PYMDRLDYVAPMNQEHAYCLAIERLTGTVIPRRASLIRVLFSEIGRLLNHLMNVTTGAMD 140
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTPPLWGF RE+LM FYERASG+RMHAAYFRPGGVHQD+ L++DI W FP
Sbjct: 141 VGALTPPLWGFTAREELMGFYERASGARMHAAYFRPGGVHQDLDARLIDDIETWAIGFPK 200
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+D+ L+T NR+FKQR V+I + +DA WGFSGVM+RGSG AWDLR++QPYECY E
Sbjct: 201 LLDDLDGLVTENRVFKQRTVDIAIISQQDALDWGFSGVMVRGSGMAWDLRRAQPYECYDE 260
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF +PIGK+GDCYDRYL+RM EMR+S +IIRQ + +L + + KI PPKR
Sbjct: 261 FDFLVPIGKNGDCYDRYLLRMEEMRQSTRIIRQALTKLRAEPGEV---LARGKITPPKRG 317
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SME+LIHHFKLYTEG+HVP G++YAAVEAPKGEFGVYL+SDG NKPYR K+RAPGY
Sbjct: 318 EMKTSMEALIHHFKLYTEGFHVPAGQIYAAVEAPKGEFGVYLVSDGSNKPYRIKLRAPGY 377
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQAM+F+ GHQLADV+AI+ ++D+VFGE+DR
Sbjct: 378 AHLQAMDFMAAGHQLADVAAIMATIDVVFGEIDR 411
>gi|253702592|ref|YP_003023781.1| NADH dehydrogenase I, D subunit [Geobacter sp. M21]
gi|251777442|gb|ACT20023.1| NADH dehydrogenase I, D subunit [Geobacter sp. M21]
Length = 389
Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats.
Identities = 191/391 (48%), Positives = 270/391 (69%), Gaps = 4/391 (1%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
S T+N GPQHP+ HGVLRL++ELDGE+++++ PHIG LHRG EKL E +T+ QA+P
Sbjct: 3 SEIMTLNMGPQHPSTHGVLRLVVELDGEVIQKITPHIGYLHRGIEKLSEHRTYHQALPLT 62
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DR+DY+APM+ Y LAVEKLLGIE+P R + IRV+ +E+ R+ SHL+ + A+D+GA
Sbjct: 63 DRMDYLAPMHNNLGYVLAVEKLLGIEVPERAETIRVILAELTRLKSHLVWIACHALDIGA 122
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+T ++ F EREK+M YE SG+RM + YFR GG+ +D+P + D+FP +
Sbjct: 123 MTVFIYAFREREKIMELYEMVSGARMTSNYFRVGGLSRDLPAGFETAVQEIIDTFPGHFD 182
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
LLT N I+ QR + G + +DA +G SG +RGSG +DLR+ PY Y + DF
Sbjct: 183 TYEGLLTKNTIWLQRTIGNGVISADDAIDFGISGPALRGSGVDFDLRRDLPYSGYEKYDF 242
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+P+G++ D +DRY VR++EMRE+VKII Q + RL K GP+ A P++ P + +
Sbjct: 243 KVPVGENCDTFDRYKVRLVEMREAVKIIDQAMKRL----KPGPILADAPQVCYPPKESVY 298
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
S+E LIHHFK+ +EG+ VP GEVY VE PKGE G Y++SDGG+KPYR ++R P + +L
Sbjct: 299 NSIEGLIHHFKIASEGFPVPEGEVYQGVENPKGELGYYMVSDGGSKPYRMRVRPPSFVNL 358
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A+E + KG +AD+ A++G+LDIV GE+DR
Sbjct: 359 GAIEKMAKGSMIADLVAVIGTLDIVLGEIDR 389
>gi|87200314|ref|YP_497571.1| NADH dehydrogenase subunit D [Novosphingobium aromaticivorans DSM
12444]
gi|123488914|sp|Q2G5Y6|NUOD_NOVAD RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|87135995|gb|ABD26737.1| NADH dehydrogenase subunit D [Novosphingobium aromaticivorans DSM
12444]
Length = 403
Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats.
Identities = 250/392 (63%), Positives = 319/392 (81%), Gaps = 5/392 (1%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
++TINFGPQHPAAHGVLR+++ELDGEI+ER+DPH+GLLHRGTEKLIE KT+LQA+PYF
Sbjct: 16 ITNYTINFGPQHPAAHGVLRMVMELDGEIIERIDPHVGLLHRGTEKLIEHKTYLQALPYF 75
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DRLDY +P+ EH+Y LAVEKLL IE+P+R Q +RVL++E+ RI +H+LN+ + MDVGA
Sbjct: 76 DRLDYCSPLGMEHSYVLAVEKLLNIEVPLRAQYLRVLFAELTRICNHMLNLGSHVMDVGA 135
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS-FPSAL 184
+TP LW FE RE + F+ERASG+RMH+A+FRPGGVHQD+P +L+ D+ W D
Sbjct: 136 MTPNLWLFEIREDCLNFFERASGARMHSAWFRPGGVHQDVPLKLLTDMADWIDERLHPLF 195
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+D L+ NRIFKQRNV+I V EDA WGFSG MIRGSG WDLRKSQPY+ Y ++
Sbjct: 196 DDAMSLVVDNRIFKQRNVDIAVVSKEDALRWGFSGPMIRGSGIPWDLRKSQPYDVYDRME 255
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDIP+G GDCYDR++VR+ E+R+S +I++QC+ ++ GPV+++D K+VPPKRA+M
Sbjct: 256 FDIPVGTSGDCYDRFMVRVEEVRQSARIMKQCIEQMPD----GPVASTDRKVVPPKRAEM 311
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K+SME+LIHHFKLYTEG+HVP GEVY A E+PKGEFGVYL+SDG NKPYRCKIR ++H
Sbjct: 312 KQSMEALIHHFKLYTEGFHVPAGEVYVATESPKGEFGVYLVSDGSNKPYRCKIRPTAFSH 371
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
LQAM+F+CKGH L D +AILG++D+VFGE DR
Sbjct: 372 LQAMDFMCKGHMLPDATAILGAIDVVFGECDR 403
>gi|302035989|ref|YP_003796311.1| NADH-quinone oxidoreductase subunits C and D [Candidatus Nitrospira
defluvii]
gi|300604053|emb|CBK40385.1| NADH-quinone oxidoreductase, subunits C and D [Candidatus
Nitrospira defluvii]
Length = 583
Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats.
Identities = 176/394 (44%), Positives = 259/394 (65%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++ +N GPQHP+ HGVLR++LELDGE + + P +G LHRG EKL E ++Q +
Sbjct: 194 TRRREELLLNMGPQHPSTHGVLRVVLELDGERIVKATPDLGYLHRGVEKLAEGLHYMQVI 253
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P+ DRLDYV M +AY AVEKLL I +P R + +R + +E+ RI+ HL + TQA+D
Sbjct: 254 PHTDRLDYVCAMTNNYAYVRAVEKLLDITVPERAEYVRTIVAEMQRIIGHLFWLGTQALD 313
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA+T W F ERE L+ +E+ G+R+ Y+R GGV D P+LV + + +FP
Sbjct: 314 IGAMTVFFWTFREREVLLDMFEKLCGARLTLNYYRIGGVDSDFTPDLVVRLKAFLQTFPE 373
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+N+ + LL NRI+ R +I + EDA +G +G +RGSG +D+RK +PY Y +
Sbjct: 374 KVNEYNQLLMSNRIWVGRTKDIAVISAEDAINFGLTGPTLRGSGVDYDVRKYEPYGVYDK 433
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+++++P+GK GD YDRY VRM EMR+S +II QC++++ GP+ A P ++PP +A
Sbjct: 434 VEWEVPVGKRGDTYDRYWVRMEEMRQSARIIAQCLDQM----PEGPIMADVPHVIPPPKA 489
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ R MESLIHHF ++T+G+ P GE Y EAPKGE G +++SDG +PYR KIRAP +
Sbjct: 490 KVMRDMESLIHHFIIFTQGFKPPKGETYCGTEAPKGELGFFIVSDGSPRPYRLKIRAPSF 549
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H+ A + + +G+ ++D+ I G+ DIV GE DR
Sbjct: 550 IHMGAFDHMARGYLISDIITIFGTYDIVMGECDR 583
>gi|15836911|ref|NP_297599.1| NADH dehydrogenase subunit D [Xylella fastidiosa 9a5c]
gi|81788888|sp|Q9PGJ2|NUOD_XYLFA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|9105131|gb|AAF83119.1|AE003884_4 NADH-ubiquinone oxidoreductase, NQO4 subunit [Xylella fastidiosa
9a5c]
Length = 435
Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats.
Identities = 231/419 (55%), Positives = 299/419 (71%), Gaps = 27/419 (6%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K++ R++T+NFGPQHPAAHGVLRLILE+DGE V R DPHIGLLHRGTEKL E+K F Q++
Sbjct: 19 KQEIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHRGTEKLAESKPFNQSI 78
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
Y DRLDYV+ M EHAY A+E L+GI+ P R Q IR ++ EI RIL+HL+ + + A+D
Sbjct: 79 GYMDRLDYVSMMCNEHAYVRAIETLIGIQAPERAQYIRTMFDEITRILNHLMWLGSNALD 138
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP--------------- 167
+GA+ L+ F ERE+LM YE SG+RMHAAY+RPGGV++D+P
Sbjct: 139 LGAMAVMLYAFREREELMDVYEAISGARMHAAYYRPGGVYRDLPDTMPKYKQSRWHKGKA 198
Query: 168 ----------ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF 217
+++ + + D+FP +++ LLT NRI+KQR V +G ++ + A WG
Sbjct: 199 LKRLNAAREGSMLDFLEHFADTFPQRIDEYETLLTDNRIWKQRTVGVGVIEPDVAKAWGM 258
Query: 218 SGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCV 277
+GVM+RGSG AWDLRK QPY Y +DFDIP+G GDCYDRYL R+ EMRES +II+QCV
Sbjct: 259 TGVMLRGSGVAWDLRKKQPYAKYDAVDFDIPLGTCGDCYDRYLCRVAEMRESNRIIKQCV 318
Query: 278 NRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPK 337
L K G V + K+ PPKR MK ME+LIHHFKL++EGY VP GE Y+AVEAPK
Sbjct: 319 QWL--KVNPGQVMVENFKVAPPKRESMKDDMEALIHHFKLFSEGYCVPAGETYSAVEAPK 376
Query: 338 GEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GEFG YLISDG NKP+R +RAPG+AHL +M+ + +G+ LADV A++G+ D+VFGEVDR
Sbjct: 377 GEFGCYLISDGANKPFRVHLRAPGFAHLSSMDAVVRGYMLADVVAMIGTYDLVFGEVDR 435
>gi|195504349|ref|XP_002099040.1| GE23599 [Drosophila yakuba]
gi|194185141|gb|EDW98752.1| GE23599 [Drosophila yakuba]
Length = 523
Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats.
Identities = 224/390 (57%), Positives = 285/390 (73%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
R+ INFGP HPAAHGVLR+ILELD E V DPHIGLLHRGTEKLIE KT+ QA+PYFD
Sbjct: 138 RTKLINFGPAHPAAHGVLRMILELDNETVLNADPHIGLLHRGTEKLIEYKTYTQALPYFD 197
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYV+ M E AY LAVEKLL +E+P R + IR ++SEI R+ +H + + + +D GA+
Sbjct: 198 RLDYVSCMANELAYCLAVEKLLNVEVPPRAKYIRTMFSEIMRLTNHTMAIGSSVLDCGAI 257
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP W FEEREKL F ERASG+R+HAAY RPGGV DIP + D+ + + F L++
Sbjct: 258 TPLFWLFEEREKLYEFSERASGARLHAAYIRPGGVASDIPLGFMHDLYQFINQFNHRLDE 317
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ D++T NRI++ RN+ IG + DA +G +G ++R +G WDLRK QPY+ Y E+DFD
Sbjct: 318 VEDVVTDNRIWRMRNIGIGVISAHDALNYGCTGPVLRATGVKWDLRKQQPYDAYDEMDFD 377
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ +G +GDCYDRYLVRM EMRESV II+QC++R+ G + D KI PP+R+ MK
Sbjct: 378 VVVGSNGDCYDRYLVRMREMRESVNIIKQCIDRM----PPGEIKVDDLKICPPQRSRMKE 433
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
ME LIHHFK +++G+ VP G+ Y AVE+PKGEFG +LISDG ++PYRCKIR YAHL
Sbjct: 434 GMEDLIHHFKHFSQGFRVPPGQTYCAVESPKGEFGAFLISDGSSRPYRCKIRPASYAHLA 493
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
M + H LADV AI+GSLDIVFGE+DR
Sbjct: 494 LMAKMAPAHLLADVVAIIGSLDIVFGEIDR 523
>gi|312067890|ref|XP_003136956.1| hypothetical protein LOAG_01369 [Loa loa]
gi|307767886|gb|EFO27120.1| hypothetical protein LOAG_01369 [Loa loa]
Length = 476
Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats.
Identities = 241/396 (60%), Positives = 302/396 (76%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ +K + +NFGPQHPAAHGVLRL+LELD EIV + PHIGLLHRGTEKLIE KT+ Q
Sbjct: 85 IHEKPLHYYLLNFGPQHPAAHGVLRLVLELDNEIVMKATPHIGLLHRGTEKLIEYKTYTQ 144
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVPYFDR+DYV+ M E A+ALAVEKLLG++IP R + IR L +E+ RI +HL+ VTT A
Sbjct: 145 AVPYFDRMDYVSMMCNETAFALAVEKLLGVDIPPRAKFIRTLMNELTRIQNHLMGVTTHA 204
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+D+GA+TP W FEEREK+ F ER G+RMH+ Y RPGGV D+P ++D+ W F
Sbjct: 205 LDIGAMTPLFWMFEEREKMFEFTERVCGARMHSNYVRPGGVAWDLPLGWMDDVYDWALRF 264
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P L+ + DLLTGNRIF R V+IG VK EDA WGFSGVM+RGSG WD+RKSQPY+ Y
Sbjct: 265 PQRLDMMEDLLTGNRIFMARTVDIGLVKAEDALLWGFSGVMLRGSGIKWDIRKSQPYDAY 324
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
++DFD+P+G GDCYDRYL+RM EMRESVKII +C+N++ G + D K+VPPK
Sbjct: 325 DQVDFDVPVGVKGDCYDRYLIRMEEMRESVKIIFECLNKM----PPGEIKVDDHKVVPPK 380
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
RA+MK++MESLIHHFK YTEGY VP G Y VEAPKGEFGVYL+S G ++PYRC R+P
Sbjct: 381 RAEMKQNMESLIHHFKYYTEGYQVPPGATYVPVEAPKGEFGVYLVSQGESRPYRCFARSP 440
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ HL A++ +C L+DV A++G+LD+VFGE+DR
Sbjct: 441 GFPHLAAIDDICYMSLLSDVVAVIGTLDLVFGEIDR 476
>gi|85857674|gb|ABC86372.1| IP11827p [Drosophila melanogaster]
Length = 530
Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats.
Identities = 223/390 (57%), Positives = 284/390 (72%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
R+ INFGP HPAAHGVLR+ILELD E V DPHIGLLHRGTEKLIE KT+ QA+PYFD
Sbjct: 145 RTKLINFGPAHPAAHGVLRMILELDNETVLNADPHIGLLHRGTEKLIEYKTYTQALPYFD 204
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYV+ M E AY LAVEKLL +E+P R + IR ++SEI R+ +H + + + +D GA+
Sbjct: 205 RLDYVSCMANELAYCLAVEKLLNVEVPRRAKYIRTMFSEIMRLTNHTMAIGSSVLDCGAI 264
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP W FEEREKL F ERASG+R+HAAY RPGGV DIP + D+ + + F L++
Sbjct: 265 TPLFWLFEEREKLYEFSERASGARLHAAYIRPGGVASDIPLGFLHDLYQFINQFNERLDE 324
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ D++T NRI++ RN+ IG + DA +G +G ++R +G WDLRK QPY+ Y E+DFD
Sbjct: 325 VEDVVTDNRIWRMRNIGIGVISAHDALNYGCTGPVLRATGVKWDLRKQQPYDAYDEMDFD 384
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ +G +GDCYDRYLVRM EMRESV II+QC++ + G + D KI PP+R+ MK
Sbjct: 385 VVVGSNGDCYDRYLVRMREMRESVNIIKQCIDAM----PPGEIKVDDLKICPPQRSKMKE 440
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
ME LIHHFK +++G+ VP G+ Y AVE+PKGEFG +LISDG ++PYRCKIR YAHL
Sbjct: 441 GMEDLIHHFKHFSQGFRVPPGQTYCAVESPKGEFGAFLISDGSSRPYRCKIRPASYAHLA 500
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
M + H LADV AI+GSLDIVFGE+DR
Sbjct: 501 LMAKMAPAHLLADVVAIIGSLDIVFGEIDR 530
>gi|326387459|ref|ZP_08209068.1| NADH dehydrogenase subunit D [Novosphingobium nitrogenifigens DSM
19370]
gi|326208115|gb|EGD58923.1| NADH dehydrogenase subunit D [Novosphingobium nitrogenifigens DSM
19370]
Length = 403
Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats.
Identities = 245/390 (62%), Positives = 313/390 (80%), Gaps = 5/390 (1%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
++TINFGPQHPAAHGVLR+++ELDGEI+ER+DPHIGLLHRGTEKLIE KT+LQA+PYFDR
Sbjct: 18 NYTINFGPQHPAAHGVLRMVMELDGEIIERIDPHIGLLHRGTEKLIEYKTYLQALPYFDR 77
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
LDY +P+ E++Y LA+EKLL +E+P+R Q +RVL++E+ RI +H+LN+ + MDVGA+T
Sbjct: 78 LDYCSPLAMEYSYVLAIEKLLNVEVPLRAQYLRVLFAELTRICNHMLNIGSHVMDVGAMT 137
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD-SFPSALND 186
P LW FE RE + F+ERASG+RMH+A+FRPGGVHQD+P +L+ DI W D P +D
Sbjct: 138 PNLWLFEIREDCLTFFERASGARMHSAWFRPGGVHQDVPLKLLTDIADWLDTRLPELFDD 197
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
L+ NRIFKQRNV+I V EDA WGFSG MIRG+G WD+RK+QPY+ Y +DF+
Sbjct: 198 AMSLVVDNRIFKQRNVDIALVSKEDALAWGFSGPMIRGAGIPWDIRKAQPYDVYDRMDFE 257
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
IP+G + DCYDR +VR+ E+R+S +I++QC+ ++ GPV SD K+ PPKR +MK
Sbjct: 258 IPVGTNSDCYDRMMVRVEEVRQSARIMKQCLEQM----PEGPVLTSDRKVAPPKRGEMKS 313
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
SMESLIHHFKLYTEG+HVP GEVY A E+PKGEFGVYL+SDG NKPYRCKIR ++HLQ
Sbjct: 314 SMESLIHHFKLYTEGFHVPAGEVYVATESPKGEFGVYLVSDGTNKPYRCKIRPTAFSHLQ 373
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AM+F+ KGH L D +AILG++D+VFGE DR
Sbjct: 374 AMDFMSKGHMLPDATAILGAIDVVFGECDR 403
>gi|167627156|ref|YP_001677656.1| NADH dehydrogenase subunit D [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|229891390|sp|B0TWP7|NUOD_FRAP2 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|167597157|gb|ABZ87155.1| NADH dehydrogenase (ubiquinone) [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 417
Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats.
Identities = 231/415 (55%), Positives = 294/415 (70%), Gaps = 27/415 (6%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+++T+NFGP HPAAHGVLRLILELDGE V R DPH+GLLHRGTEKL E K + Q++ Y D
Sbjct: 5 KNYTLNFGPVHPAAHGVLRLILELDGETVVRADPHVGLLHRGTEKLAEFKPYNQSIGYMD 64
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYV+ M EHAY +A+EKLL +E+P R Q IRV+++E+ RIL+HLL V +D+GA+
Sbjct: 65 RLDYVSMMCNEHAYVMAIEKLLELEVPERAQYIRVMFAEMTRILNHLLWVAACGIDLGAM 124
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE------------------ 168
T L+ F RE L YE SG+RMHAAYFRPGGV +D+P +
Sbjct: 125 TVFLYAFRVREDLFDCYEAVSGARMHAAYFRPGGVARDLPTQMPQYKQTRFTSKRKTKKI 184
Query: 169 -------LVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVM 221
+++ + + F +L++I LLT NR++KQR V+IG V E A GF+G M
Sbjct: 185 NANRQGSMLDFLDSFVVDFDKSLDEIDTLLTDNRLWKQRTVDIGVVTAERAVELGFTGPM 244
Query: 222 IRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL 281
+RGSG AWDLRKSQPYE Y +LDFDIP+G +GDCYDRYLVRM EMRES K+I+QCV+ L
Sbjct: 245 LRGSGVAWDLRKSQPYEVYDKLDFDIPVGANGDCYDRYLVRMAEMRESNKLIKQCVDWL- 303
Query: 282 GKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFG 341
+ GPV + + K+ PPKR MK +ME LIHHFKL++EGY P GEVY E PKGEFG
Sbjct: 304 -RANQGPVLSDNHKVAPPKRNAMKNNMEELIHHFKLFSEGYCTPEGEVYVGTEHPKGEFG 362
Query: 342 VYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
VY+ SDG NKPYR K++APG+ H+ AM+ L GH LAD AI+ ++D+VFG+VDR
Sbjct: 363 VYIKSDGANKPYRLKMKAPGFTHISAMDELLSGHMLADTPAIISTIDVVFGDVDR 417
>gi|308498626|ref|XP_003111499.1| CRE-NDUF-2.2 protein [Caenorhabditis remanei]
gi|308239408|gb|EFO83360.1| CRE-NDUF-2.2 protein [Caenorhabditis remanei]
Length = 487
Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats.
Identities = 228/407 (56%), Positives = 301/407 (73%), Gaps = 17/407 (4%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ-- 60
+K + +NFGPQHPAAHGVLRL+L+L+GE++ + PHIGLLHR TEKLIE KT+ Q
Sbjct: 85 EKSLENMILNFGPQHPAAHGVLRLVLKLEGEVILKAIPHIGLLHRATEKLIEHKTYTQVK 144
Query: 61 -----------AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRI 109
A+PYFDRLDYV+ M E A+ALA+EKLLGI+IP R + IR L+ E+ RI
Sbjct: 145 EINPFLGYLKIALPYFDRLDYVSMMCNEQAFALAIEKLLGIDIPPRAKYIRTLFGELTRI 204
Query: 110 LSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL 169
+H++ +TT A+D+GA+TP W FEEREKL F ER SG+RMHA Y RPGGV D+P L
Sbjct: 205 QNHIMGITTHALDIGAMTPFFWMFEEREKLFEFSERVSGARMHANYVRPGGVAWDLPIGL 264
Query: 170 VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAW 229
++DI W FP+ ++++ D+LT NRI+K R ++IG V DA WGFSGVM+RGSG
Sbjct: 265 MDDIYDWAVKFPARIDELEDMLTENRIWKARTIDIGLVSAADALNWGFSGVMVRGSGIKQ 324
Query: 230 DLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPV 289
D+RK++PY+ Y++++FD+PIG GDCYDRYL R+ EMR+S+ I+ QC+NR+ G +
Sbjct: 325 DVRKTEPYDAYADMEFDVPIGTKGDCYDRYLCRVEEMRQSLNIVHQCLNRM----PTGEI 380
Query: 290 SASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGG 349
D K+VPPKR +MK +MESLIHHFK +TEG+ VP G Y +EAPKGEFGVYL++DG
Sbjct: 381 KVDDHKVVPPKRGEMKENMESLIHHFKFFTEGFQVPPGATYVPIEAPKGEFGVYLVADGT 440
Query: 350 NKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
KPYRC IRAPG+AHL A++ +C +AD+ A++G++DIVFGEVDR
Sbjct: 441 GKPYRCFIRAPGFAHLAAIQDVCYMSLIADIVAVIGTMDIVFGEVDR 487
>gi|116619255|ref|YP_821411.1| NADH dehydrogenase I, D subunit [Candidatus Solibacter usitatus
Ellin6076]
gi|122256131|sp|Q02CU0|NUOD1_SOLUE RecName: Full=NADH-quinone oxidoreductase subunit D 1; AltName:
Full=NADH dehydrogenase I subunit D 1; AltName:
Full=NDH-1 subunit D 1
gi|116222417|gb|ABJ81126.1| NADH dehydrogenase I, D subunit [Candidatus Solibacter usitatus
Ellin6076]
Length = 409
Score = 430 bits (1107), Expect = e-118, Method: Composition-based stats.
Identities = 173/393 (44%), Positives = 247/393 (62%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ R +N GPQHP+ HGVLRL++ELDGE + + P IG LH G EK E K + QAV
Sbjct: 21 EGGRRMVLNMGPQHPSTHGVLRLLMELDGENIMKCVPDIGFLHTGIEKEFEEKFYQQAVT 80
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+DY+AP++ + LAVEKLL +EIP + Q +RV+ +E+ R+ SHL+ + T A+D+
Sbjct: 81 LTDRVDYLAPLSNNLGWCLAVEKLLQLEIPPQAQWMRVMLTELTRLNSHLVWLGTHALDI 140
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA++ L+ F ERE+++ +E SG RM +YFR GG+ + P + + + D FPS
Sbjct: 141 GAMSVFLYCFREREEILKIFELFSGQRMMTSYFRIGGLALEPPRGWQQRVKKFLDVFPSR 200
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ +LLT NRI+ R IG + LED G +G M+R +G D RK PY Y +
Sbjct: 201 IDEYENLLTNNRIWTGRTKGIGFISLEDMLDLGITGPMLRAAGLKIDARKDAPYSSYEKF 260
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DF++P D + RY VR+ EMR+S KI+RQ + + G A P +V P R
Sbjct: 261 DFEVPTSTDNDVFARYQVRVEEMRQSTKIVRQAMEGMPA----GAWKADAPHVVLPDREK 316
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK ME+LI HFK+ TEG+ VP GEVY +E+P+GE G Y++SDG KPYR +R P +
Sbjct: 317 MKTQMEALIFHFKIVTEGFRVPEGEVYQVIESPRGELGYYVVSDGTTKPYRVHMRTPSFG 376
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQA+ + +G +ADV A +GS+D V G+ DR
Sbjct: 377 NLQAVPKMVEGSLIADVIASIGSMDFVLGDTDR 409
>gi|221459469|ref|NP_651392.2| CG11913 [Drosophila melanogaster]
gi|220903213|gb|AAF56465.2| CG11913 [Drosophila melanogaster]
Length = 523
Score = 430 bits (1107), Expect = e-118, Method: Composition-based stats.
Identities = 223/390 (57%), Positives = 284/390 (72%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
R+ INFGP HPAAHGVLR+ILELD E V DPHIGLLHRGTEKLIE KT+ QA+PYFD
Sbjct: 138 RTKLINFGPAHPAAHGVLRMILELDNETVLNADPHIGLLHRGTEKLIEYKTYTQALPYFD 197
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYV+ M E AY LAVEKLL +E+P R + IR ++SEI R+ +H + + + +D GA+
Sbjct: 198 RLDYVSCMANELAYCLAVEKLLNVEVPRRAKYIRTMFSEIMRLTNHTMAIGSSVLDCGAI 257
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP W FEEREKL F ERASG+R+HAAY RPGGV DIP + D+ + + F L++
Sbjct: 258 TPLFWLFEEREKLYEFSERASGARLHAAYIRPGGVASDIPLGFLHDLYQFINQFNERLDE 317
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ D++T NRI++ RN+ IG + DA +G +G ++R +G WDLRK QPY+ Y E+DFD
Sbjct: 318 VEDVVTDNRIWRMRNIGIGVISAHDALNYGCTGPVLRATGVKWDLRKQQPYDAYDEMDFD 377
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ +G +GDCYDRYLVRM EMRESV II+QC++ + G + D KI PP+R+ MK
Sbjct: 378 VVVGSNGDCYDRYLVRMREMRESVNIIKQCIDAM----PPGEIKVDDLKICPPQRSKMKE 433
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
ME LIHHFK +++G+ VP G+ Y AVE+PKGEFG +LISDG ++PYRCKIR YAHL
Sbjct: 434 GMEDLIHHFKHFSQGFRVPPGQTYCAVESPKGEFGAFLISDGSSRPYRCKIRPASYAHLA 493
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
M + H LADV AI+GSLDIVFGE+DR
Sbjct: 494 LMAKMAPAHLLADVVAIIGSLDIVFGEIDR 523
>gi|148555892|ref|YP_001263474.1| NADH dehydrogenase subunit D [Sphingomonas wittichii RW1]
gi|218534469|sp|A5VAM0|NUOD_SPHWW RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|148501082|gb|ABQ69336.1| NADH dehydrogenase I, D subunit [Sphingomonas wittichii RW1]
Length = 406
Score = 430 bits (1107), Expect = e-118, Method: Composition-based stats.
Identities = 248/395 (62%), Positives = 318/395 (80%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ + +++TINFGPQHPAAHGVLR+++ELDGEIVERVDPH+GLLHRGTEKLIE KT+LQA+
Sbjct: 16 EVEIQNYTINFGPQHPAAHGVLRMVMELDGEIVERVDPHVGLLHRGTEKLIEYKTYLQAL 75
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDY +P+ EH+Y LA+EKLL +E+P+R Q +RVL++E+ RI +H+LN+ + MD
Sbjct: 76 PYFDRLDYCSPLGMEHSYVLAIEKLLQLEVPLRAQYLRVLFAELTRICNHMLNIGSHVMD 135
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD-SFP 181
VGA+TP LW FE RE + F+ERASG+RMHAA+FRPGGVHQD+P +L+ DIG W D P
Sbjct: 136 VGAMTPNLWLFEIREDCLNFFERASGARMHAAWFRPGGVHQDVPLKLLTDIGDWLDTRLP 195
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
D L NRIFKQRNV++G V EDA WGFSG MIR +G WD+RKSQPY+ Y
Sbjct: 196 RLFEDAVSLFADNRIFKQRNVDVGVVSKEDALAWGFSGPMIRAAGIPWDIRKSQPYDVYD 255
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+DF+IP+G GDCYDR +VR+ E+R+S +I++QC++ + GP+++ D K+VPPKR
Sbjct: 256 RMDFEIPVGTKGDCYDRVMVRIEEVRQSARIMKQCLSEM----PEGPIASLDRKVVPPKR 311
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+MKRSME+LIHHFKLYTEG+HVP G+VY A E+PKGEFGVYL+SDG NKPYRCKIR
Sbjct: 312 GEMKRSMEALIHHFKLYTEGFHVPAGDVYVATESPKGEFGVYLVSDGSNKPYRCKIRPTA 371
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++HLQAM+F+ KGH LAD +AIL ++D+VFGE DR
Sbjct: 372 FSHLQAMDFMMKGHMLADTTAILSAIDVVFGECDR 406
>gi|71275687|ref|ZP_00651972.1| NADH dehydrogenase I, D subunit [Xylella fastidiosa Dixon]
gi|71897857|ref|ZP_00680083.1| NADH dehydrogenase I, D subunit [Xylella fastidiosa Ann-1]
gi|170729492|ref|YP_001774925.1| NADH dehydrogenase subunit D [Xylella fastidiosa M12]
gi|229891308|sp|B0U1W8|NUOD_XYLFM RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|71163578|gb|EAO13295.1| NADH dehydrogenase I, D subunit [Xylella fastidiosa Dixon]
gi|71732412|gb|EAO34466.1| NADH dehydrogenase I, D subunit [Xylella fastidiosa Ann-1]
gi|167964285|gb|ACA11295.1| NADH dehydrogenase [Xylella fastidiosa M12]
Length = 435
Score = 430 bits (1107), Expect = e-118, Method: Composition-based stats.
Identities = 231/419 (55%), Positives = 299/419 (71%), Gaps = 27/419 (6%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K++ R++T+NFGPQHPAAHGVLRLILE+DGE V R DPHIGLLHRGTEKL E+K F Q++
Sbjct: 19 KQEIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHRGTEKLAESKPFNQSI 78
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
Y DRLDYV+ M EHAY A+E L+GI+ P R Q IR ++ EI RIL+HL+ + + A+D
Sbjct: 79 GYMDRLDYVSMMCNEHAYVRAIETLIGIQAPERAQYIRTMFDEITRILNHLMWLGSNALD 138
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP--------------- 167
+GA+ L+ F ERE+LM YE SG+RMHAAY+RPGGV++D+P
Sbjct: 139 LGAMAVMLYAFREREELMDVYEAISGARMHAAYYRPGGVYRDLPDTMPKYKQSRWHKGKA 198
Query: 168 ----------ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF 217
+++ + + D+FP +++ LLT NRI+KQR V +G ++ + A WG
Sbjct: 199 LKRLNAAREGSMLDFLEHFTDTFPQRIDEYETLLTDNRIWKQRTVGVGVIEPDVAKAWGM 258
Query: 218 SGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCV 277
+GVM+RGSG AWDLRK QPY Y +DFDIP+G GDCYDRYL R+ EMRES +II+QCV
Sbjct: 259 TGVMLRGSGIAWDLRKKQPYAKYDAVDFDIPLGTCGDCYDRYLCRVAEMRESNRIIKQCV 318
Query: 278 NRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPK 337
L K G V + K+ PPKR MK ME+LIHHFKL++EGY VP GE Y+AVEAPK
Sbjct: 319 QWL--KVNPGQVMVENFKVAPPKRESMKDDMEALIHHFKLFSEGYCVPAGETYSAVEAPK 376
Query: 338 GEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GEFG YLISDG NKP+R +RAPG+AHL +M+ + +G+ LADV A++G+ D+VFGEVDR
Sbjct: 377 GEFGCYLISDGANKPFRVHLRAPGFAHLSSMDAVVRGYMLADVVAMIGTYDLVFGEVDR 435
>gi|241667718|ref|ZP_04755296.1| NADH dehydrogenase subunit D [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254876262|ref|ZP_05248972.1| NADH dehydrogenase subunit D [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254842283|gb|EET20697.1| NADH dehydrogenase subunit D [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 417
Score = 430 bits (1107), Expect = e-118, Method: Composition-based stats.
Identities = 231/415 (55%), Positives = 293/415 (70%), Gaps = 27/415 (6%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+++T+NFGP HPAAHGVLRLILELDGE V R DPH+GLLHRGTEKL E K + Q++ Y D
Sbjct: 5 KNYTLNFGPVHPAAHGVLRLILELDGETVVRADPHVGLLHRGTEKLAEFKPYNQSIGYMD 64
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYV+ M EHAY +A+EKLL +E+P R Q IRV+++E+ RIL+HLL V +D+GA+
Sbjct: 65 RLDYVSMMCNEHAYVMAIEKLLELEVPERAQYIRVMFAEMTRILNHLLWVAACGIDLGAM 124
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP------------------- 167
T L+ F RE L YE SG+RMHAAYFRPGGV +D+P
Sbjct: 125 TVFLYAFRVREDLFDCYEAVSGARMHAAYFRPGGVARDLPTQMPQYKQTRFTSKRKTKKI 184
Query: 168 ------ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVM 221
+++ + + F +L++I LLT NR++KQR V+IG V E A GF+G M
Sbjct: 185 NANRQGGMLDFLDSFVVDFDKSLDEIDTLLTDNRLWKQRTVDIGVVTAERAVELGFTGPM 244
Query: 222 IRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL 281
+RGSG AWDLRKSQPYE Y +LDFDIP+G +GDCYDRYLVRM EMRES K+I+QCV+ L
Sbjct: 245 LRGSGVAWDLRKSQPYEVYDKLDFDIPVGANGDCYDRYLVRMAEMRESNKLIKQCVDWL- 303
Query: 282 GKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFG 341
+ GPV + + K+ PPKR MK +ME LIHHFKL++EGY P GEVY E PKGEFG
Sbjct: 304 -RANPGPVLSDNHKVAPPKRNAMKNNMEELIHHFKLFSEGYCTPEGEVYVGTEHPKGEFG 362
Query: 342 VYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
VY+ SDG NKPYR K++APG+ H+ AM+ L GH LAD AI+ ++D+VFG+VDR
Sbjct: 363 VYIKSDGANKPYRLKMKAPGFTHISAMDELLSGHMLADTPAIISTIDVVFGDVDR 417
>gi|285017795|ref|YP_003375506.1| NADH-quinone oxidoreductase chain d (nadh dehydrogenaseI chain d)
(ndh-1, chain d) (nuo4) oxidoreductase [Xanthomonas
albilineans GPE PC73]
gi|283473013|emb|CBA15518.1| probable nadh-quinone oxidoreductase chain d (nadh dehydrogenaseI
chain d) (ndh-1, chain d) (nuo4). oxidoreductase protein
[Xanthomonas albilineans]
Length = 435
Score = 430 bits (1107), Expect = e-118, Method: Composition-based stats.
Identities = 233/419 (55%), Positives = 298/419 (71%), Gaps = 27/419 (6%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ R++T+NFGPQHPAAHGVLRLILE+DGE V R DPHIGLLHRGTEKL E+K F Q++
Sbjct: 19 RQEIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHRGTEKLAESKPFNQSI 78
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
Y DRLDYV+ M EHAY A+E L+GIE P R Q IR ++ EI RIL+HL+ V + +D
Sbjct: 79 GYMDRLDYVSMMCNEHAYVRAIETLMGIEAPERAQYIRTMFDEITRILNHLMWVGSNGLD 138
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL------------- 169
+GA+ L+ F ERE+LM YE SG+RMHA Y+RPGGV++D+P +
Sbjct: 139 LGAMAVMLYAFREREELMDAYEAVSGARMHATYYRPGGVYRDLPDRMPKYQESRWHKGNA 198
Query: 170 ------------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF 217
++ + + ++FP +++ LLT NRI+KQR V IG V E A+ WG
Sbjct: 199 LKRLNAAREGSLLDFLEDFTNTFPGRVDEYETLLTDNRIWKQRTVGIGVVTPEQAYAWGM 258
Query: 218 SGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCV 277
+GVM+RGSG AWDLRK QPY Y + FDIP+G +GDCYDRYLVR+ EMRES +II+QCV
Sbjct: 259 TGVMLRGSGIAWDLRKKQPYAKYGSVQFDIPVGSNGDCYDRYLVRVAEMRESNRIIKQCV 318
Query: 278 NRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPK 337
L GPV + K+ PPKRADMK ME+LIHHFKL++EGY VP GE Y AVEAPK
Sbjct: 319 QWLKA--NPGPVMVENFKVAPPKRADMKDDMEALIHHFKLFSEGYCVPAGETYCAVEAPK 376
Query: 338 GEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GEFG YL+SDG NKP+R +RAPG+ HL +M+ + +GH LADV A++G+ D+VFGEVDR
Sbjct: 377 GEFGCYLMSDGANKPFRVHLRAPGFVHLSSMDAIVRGHMLADVVAMIGTYDLVFGEVDR 435
>gi|194908591|ref|XP_001981800.1| GG11402 [Drosophila erecta]
gi|190656438|gb|EDV53670.1| GG11402 [Drosophila erecta]
Length = 523
Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats.
Identities = 224/390 (57%), Positives = 286/390 (73%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
R+ INFGP HPAAHGVLR+ILELD E V DPHIGLLHRGTEKLIE KT+ QA+PYFD
Sbjct: 138 RTKLINFGPAHPAAHGVLRMILELDNETVLNADPHIGLLHRGTEKLIEYKTYTQALPYFD 197
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYV+ M E AY LAVEKLL +E+P R + IR ++SEI R+ +H + + + +D GA+
Sbjct: 198 RLDYVSCMANELAYCLAVEKLLNVEVPRRAKFIRTMFSEIMRLTNHTMAIGSSVLDCGAI 257
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP W FEEREKL F ERASG+R+HAAY RPGGV DIP + D+ + + F L++
Sbjct: 258 TPLFWLFEEREKLYEFSERASGARLHAAYIRPGGVASDIPLGFLHDLYQFINQFNDRLDE 317
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ D++T NRI++ RN+ IG + DA +G +G ++R +G WDLRK QPY+ Y E+DFD
Sbjct: 318 VEDVVTDNRIWRMRNIGIGVISAHDALNYGCTGPVLRATGVKWDLRKQQPYDAYDEMDFD 377
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ +G +GDCYDRYLVRM EMRESV II+QC++R+ G + D KI PP+R+ MK
Sbjct: 378 VVVGSNGDCYDRYLVRMREMRESVNIIKQCIDRM----PPGEIKVDDLKICPPQRSRMKE 433
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
ME LIHHFK +++G+ VP G+ Y+AVE+PKGEFG +LISDG ++PYRCKIR YAHL
Sbjct: 434 GMEDLIHHFKHFSQGFRVPPGQTYSAVESPKGEFGAFLISDGSSRPYRCKIRPASYAHLA 493
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
M + H LADV AI+GSLDIVFGE+DR
Sbjct: 494 LMAKMAPAHLLADVVAIIGSLDIVFGEIDR 523
>gi|54298769|ref|YP_125138.1| NADH dehydrogenase subunit D [Legionella pneumophila str. Paris]
gi|148361099|ref|YP_001252306.1| NADH dehydrogenase I subunit D [Legionella pneumophila str. Corby]
gi|296108429|ref|YP_003620130.1| NADH dehydrogenase I chain D [Legionella pneumophila 2300/99 Alcoy]
gi|81679376|sp|Q5X1B0|NUOD_LEGPA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|229891401|sp|A5IHW0|NUOD_LEGPC RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|53752554|emb|CAH13986.1| NADH dehydrogenase I chain D [Legionella pneumophila str. Paris]
gi|148282872|gb|ABQ56960.1| NADH dehydrogenase I, D subunit [Legionella pneumophila str. Corby]
gi|295650331|gb|ADG26178.1| NADH dehydrogenase I chain D [Legionella pneumophila 2300/99 Alcoy]
Length = 417
Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats.
Identities = 229/417 (54%), Positives = 298/417 (71%), Gaps = 27/417 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ +++T+NFGPQHPAAHGVLRL+LEL+GE + R DPHIGLLHR TEKL ETK ++Q++ Y
Sbjct: 3 ELKNYTLNFGPQHPAAHGVLRLVLELEGETIVRADPHIGLLHRATEKLAETKPYIQSIGY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDYV+ M EHAY +A+EKLLGIE P+R + IR ++ E+ RIL+HLL + A+D+G
Sbjct: 63 MDRLDYVSMMCNEHAYVMAIEKLLGIEPPLRAKYIRTMFDEVTRILNHLLWLGATALDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL--------------- 169
A+T L+ F ERE L YE SG+RMHA Y+RPGGV +D+P +
Sbjct: 123 AMTVFLYCFREREDLFDCYEAVSGARMHATYYRPGGVARDLPDTMPQYKPSRWHNEREIE 182
Query: 170 ----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
++ + + + FP +++ LLT NRI+KQR V+IG V E+A WGF+G
Sbjct: 183 KKNHNRQGSLLDFLWAFTERFPRCVDEYETLLTDNRIWKQRTVDIGIVSPENALQWGFTG 242
Query: 220 VMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR 279
M+RGSG AWDLRK Q Y Y +DFDIP+GK GDCYDRYLVR+ E+R+S +IIRQC+
Sbjct: 243 PMLRGSGIAWDLRKKQSYAAYDRVDFDIPVGKTGDCYDRYLVRVEELRQSNRIIRQCIEW 302
Query: 280 LLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGE 339
L + GPV D K+ PP+R MK ME+LIHHFKL+TEG+ +P GEVY++VEAPKGE
Sbjct: 303 L--RKHPGPVKVDDYKVTPPRRVVMKHDMEALIHHFKLFTEGFCLPRGEVYSSVEAPKGE 360
Query: 340 FGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
FG+Y++SDG NKPYR KIRAPG+AHL + + + +GH LAD AIL S DIVFGE+DR
Sbjct: 361 FGIYMVSDGANKPYRLKIRAPGFAHLSSFDDMVRGHMLADGVAILASQDIVFGEIDR 417
>gi|320449687|ref|YP_004201783.1| NADH-quinone oxidoreductase subunit D [Thermus scotoductus SA-01]
gi|320149856|gb|ADW21234.1| NADH-quinone oxidoreductase, subunit D [Thermus scotoductus SA-01]
Length = 406
Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats.
Identities = 174/394 (44%), Positives = 256/394 (64%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ T+N GPQHP+ HGVLR+++ L GE V + PHIG LH G EK +E +T+ Q +
Sbjct: 17 ELRTEVMTLNVGPQHPSTHGVLRVVVTLSGEEVLDLVPHIGYLHTGFEKNMENRTYTQVI 76
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
Y R+DY+ + AYALAVEKL+G +P R + IR++ +E+ R+ SHL+ + T +D
Sbjct: 77 TYTPRMDYLHSFAHDLAYALAVEKLVGAVVPPRAETIRIILNELSRLASHLVFLGTGLLD 136
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GALTP + F ERE ++ +E +G R H Y R GGV +D+P E V ++ P
Sbjct: 137 LGALTPFFYAFRERETILDLFEWVTGQRFHHNYIRIGGVKEDLPEEFVPELKKLLQVLPH 196
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+++ L + IF +R +G + E A G +G +R SG +D+RK+ PY Y
Sbjct: 197 RIDEYEALFAESPIFYERARGVGVIPPEVAINLGLTGGSLRASGVNYDVRKAYPYAGYDT 256
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
FD+P+G+HGD +DR ++R+ EMRESVKII+Q + RL + GPV +P+I PP R
Sbjct: 257 YQFDVPLGEHGDVFDRMIIRIREMRESVKIIQQALERL----EPGPVRDPNPQITPPPRH 312
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
++ SME++I+HFK YTEG+H P GEVY E+ +GE G Y++SDGG+ PYR K+RAP +
Sbjct: 313 LLETSMEAVIYHFKHYTEGFHPPKGEVYVPTESARGELGYYIVSDGGSMPYRVKVRAPSF 372
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ++ + CKG Q+ D+ AI+ SLD V G+VDR
Sbjct: 373 VNLQSLPYACKGEQVPDMVAIIASLDPVMGDVDR 406
>gi|95928440|ref|ZP_01311188.1| NADH dehydrogenase I, D subunit [Desulfuromonas acetoxidans DSM
684]
gi|95135711|gb|EAT17362.1| NADH dehydrogenase I, D subunit [Desulfuromonas acetoxidans DSM
684]
Length = 392
Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats.
Identities = 186/393 (47%), Positives = 260/393 (66%), Gaps = 6/393 (1%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ + TIN GPQHP+ HGVL+L+LELDGE V + PHIG LHRG EKL E +++ +A+P
Sbjct: 4 TETMTINMGPQHPSTHGVLQLVLELDGETVVKAVPHIGFLHRGVEKLSENRSYHRALPLT 63
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DRLDY+APM+ Y LAVEKLLGI IP R +++RV+ +E+ RI SHL+ + T A+D+
Sbjct: 64 DRLDYLAPMSNNLGYVLAVEKLLGITDQIPERAKVVRVMMAELTRIKSHLVWLATHALDI 123
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+T L+ F ERE +M YE+ SG+RM + YFR GG+ D+P D+ + D+ P
Sbjct: 124 GAMTVFLYCFREREAIMDMYEKLSGARMTSNYFRVGGLSLDLPEGFENDVRDFIDAMPGH 183
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
++ LLTGN+I+++R + + + EDA G +G +RGSG WDLR+ PY Y +
Sbjct: 184 IDTYEGLLTGNKIWQKRTIGVAKISAEDAIDIGLTGPALRGSGVDWDLRRDNPYTGYEDY 243
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DF + D +DRY +R+ EMRES KIIRQ + +L + GP+ A P + P++
Sbjct: 244 DFKVITRDGCDTFDRYKIRLDEMRESCKIIRQALEKL----QPGPILADVPSVCLPEKKK 299
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ S+E LIH FK+ TEG+ GEVY +EAPKGE G Y++SDG P+R KIR P +
Sbjct: 300 VVNSIEGLIHQFKIITEGFKPEPGEVYQGIEAPKGELGYYMVSDGSANPFRMKIRPPSFV 359
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQA+ + +G LADV A +G+LDIV GE+DR
Sbjct: 360 NLQALPQMIEGALLADVIAAIGTLDIVLGEIDR 392
>gi|71897769|ref|ZP_00679995.1| NADH dehydrogenase I, D subunit [Xylella fastidiosa Ann-1]
gi|71732324|gb|EAO34378.1| NADH dehydrogenase I, D subunit [Xylella fastidiosa Ann-1]
Length = 435
Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats.
Identities = 231/419 (55%), Positives = 300/419 (71%), Gaps = 27/419 (6%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K++ R++T+NFGPQHPAAHGVLRLILE+DGE V R DPHIGLLHRGTEKL E+K F Q++
Sbjct: 19 KQEIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHRGTEKLAESKPFNQSI 78
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
Y DRLDYV+ M EHAY A+E L+GI++P R Q IR ++ EI RIL+HL+ + + A+D
Sbjct: 79 GYMDRLDYVSMMCNEHAYVRAIETLIGIQVPERAQYIRTMFDEITRILNHLMWLGSNALD 138
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP--------------- 167
+GA+ L+ F ERE+LM YE SG+RMHAAY+RPGGV++D+P
Sbjct: 139 LGAMAVMLYAFREREELMDVYEAISGARMHAAYYRPGGVYRDLPDTMPKYKQSRWHKGKA 198
Query: 168 ----------ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF 217
+++ + + D+FP +++ LLT NRI+KQR V +G ++ + A WG
Sbjct: 199 LKRLNAAREGSMLDFLEHFTDTFPQRIDEYETLLTDNRIWKQRTVGVGVIEPDVAKAWGM 258
Query: 218 SGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCV 277
+GVM+RGSG AWDLRK QPY Y +DFDIP+G GDCYDRYL R+ EMRES +II+QCV
Sbjct: 259 TGVMLRGSGIAWDLRKKQPYAKYDAVDFDIPLGTCGDCYDRYLCRVAEMRESNRIIKQCV 318
Query: 278 NRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPK 337
L K G V + K+ PPKR MK ME+LIHHFKL++EGY VP GE Y+AVEAPK
Sbjct: 319 QWL--KVNPGQVMVENFKVAPPKRESMKDDMEALIHHFKLFSEGYCVPAGETYSAVEAPK 376
Query: 338 GEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GEFG YLISDG NKP+R +RAPG+AHL +M+ + +G+ LADV A++G+ D+VFGEVDR
Sbjct: 377 GEFGCYLISDGANKPFRVHLRAPGFAHLSSMDAVVRGYMLADVVAMIGTYDLVFGEVDR 435
>gi|52842984|ref|YP_096783.1| NADH dehydrogenase subunit D [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|52630095|gb|AAU28836.1| NADH dehydrogenase I, D subunit [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
Length = 422
Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats.
Identities = 228/417 (54%), Positives = 298/417 (71%), Gaps = 27/417 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ +++T+NFGPQHPAAHGVLRL+LEL+GE + R DPHIGLLHR TEKL ETK ++Q++ Y
Sbjct: 8 ELKNYTLNFGPQHPAAHGVLRLVLELEGETIVRADPHIGLLHRATEKLAETKPYIQSIGY 67
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDYV+ M EHAY +A+EKLLGIE P+R + IR ++ E+ RIL+HLL + A+D+G
Sbjct: 68 MDRLDYVSMMCNEHAYVMAIEKLLGIEPPLRAKYIRTMFDEVTRILNHLLWLGATALDIG 127
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL--------------- 169
A+T L+ F ERE L YE SG+RMHA Y+RPGGV +D+P +
Sbjct: 128 AMTVFLYCFREREDLFDCYEAVSGARMHATYYRPGGVARDLPDTMPQYKPSRWHSEREIE 187
Query: 170 ----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
++ + + + FP +++ LLT NRI+KQR V+IG V E+A WGF+G
Sbjct: 188 KKNHNRQGSLLDFLWDFTERFPHCVDEYETLLTDNRIWKQRTVDIGVVSPENALQWGFTG 247
Query: 220 VMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR 279
M+RGSG AWDLRK Q Y Y ++FDIP+GK GDCYDRYLVR+ E+R+S +IIRQC+
Sbjct: 248 PMLRGSGIAWDLRKKQSYAAYDRVEFDIPVGKTGDCYDRYLVRVEELRQSNRIIRQCIEW 307
Query: 280 LLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGE 339
L + GPV D K+ PP+R MK ME+LIHHFKL+TEG+ +P GEVY++VEAPKGE
Sbjct: 308 L--RKHPGPVKVDDYKVSPPRRVVMKHDMEALIHHFKLFTEGFCLPRGEVYSSVEAPKGE 365
Query: 340 FGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
FG+Y++SDG NKPYR KIRAPG+AHL + + + +GH LAD AIL S DIVFGE+DR
Sbjct: 366 FGIYMVSDGANKPYRLKIRAPGFAHLSSFDDMVRGHMLADGVAILASQDIVFGEIDR 422
>gi|94496479|ref|ZP_01303056.1| NADH dehydrogenase I, D subunit [Sphingomonas sp. SKA58]
gi|94424225|gb|EAT09249.1| NADH dehydrogenase I, D subunit [Sphingomonas sp. SKA58]
Length = 411
Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats.
Identities = 248/395 (62%), Positives = 317/395 (80%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +++TINFGPQHPAAHGVLRL++EL+GEIVER DPH+GLLHRGTEKLIE KT+LQA+
Sbjct: 21 DTEIQNYTINFGPQHPAAHGVLRLVMELEGEIVERCDPHVGLLHRGTEKLIEYKTYLQAL 80
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDY +P+ EH+Y LAVEKLL +E+P+R Q +RV ++E+ RI +H+LN+ + MD
Sbjct: 81 PYFDRLDYCSPLGMEHSYVLAVEKLLNLEVPLRAQYLRVFFAELTRICNHMLNLGSHVMD 140
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD-SFP 181
VGA+TP LW FE RE + F+ERASG+RMH+AYFRPGGVHQD+P +L+ DI W D P
Sbjct: 141 VGAMTPNLWLFEIREDCLNFFERASGARMHSAYFRPGGVHQDVPLKLLTDIADWLDTRLP 200
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
D L+ NRIFKQRNV+I V EDA WGFSG MIRGSG WD+RK+QPY+ Y
Sbjct: 201 RLFEDAMSLVVDNRIFKQRNVDIAVVSKEDALKWGFSGPMIRGSGIPWDIRKAQPYDVYD 260
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+DFD+P+G + DCYDR++VR+ E+R+S +I++QC+N + GP+++ D K+VPPKR
Sbjct: 261 RMDFDVPVGTNFDCYDRFMVRVEEVRQSARIMKQCLNEM----PEGPIASFDRKVVPPKR 316
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+MKRSME+LIHHFKLYTEG+HVP GEVY A E+PKGEFGVYL++DG NKPYRCKIR
Sbjct: 317 GEMKRSMEALIHHFKLYTEGFHVPAGEVYVATESPKGEFGVYLVADGSNKPYRCKIRPTA 376
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++HLQAM+F+ KGH LAD +A+LG++DIVFGE DR
Sbjct: 377 FSHLQAMDFMMKGHMLADTTAVLGAMDIVFGECDR 411
>gi|328953788|ref|YP_004371122.1| NAD(P)H-quinone oxidoreductase subunit H [Desulfobacca acetoxidans
DSM 11109]
gi|328454112|gb|AEB09941.1| NAD(P)H-quinone oxidoreductase subunit H [Desulfobacca acetoxidans
DSM 11109]
Length = 396
Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats.
Identities = 184/392 (46%), Positives = 252/392 (64%), Gaps = 4/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ + +N GPQHP+ HGVLR+ LELDGE++ DP IG LHRG EK+ E +T+ Q +P
Sbjct: 9 RTETMLLNLGPQHPSTHGVLRVWLELDGEVIVNADPDIGYLHRGIEKMCENRTYHQCLPL 68
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDY+A Y LAVEKLLG+E+P R Q IRVL +E RI SHL + T D+G
Sbjct: 69 TDRLDYLAGTANNLGYVLAVEKLLGVEVPKRAQYIRVLMAEFTRISSHLFWLGTHGHDLG 128
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A+TP + F ERE+LM +E A G R+ Y R GG+ D+PP VE + +FP +
Sbjct: 129 AMTPLFFAFREREQLMDLFEMAWGGRLFPCYLRIGGLAADLPPGFVEKAWEFVKAFPEKI 188
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
D +LLT NRI+ R ++G + E+A WG+SG M RGSG WD+R+ PY Y + D
Sbjct: 189 KDYHNLLTKNRIWIARTKDVGIMTREEAIDWGWSGPMARGSGVDWDIRRDTPYSSYQDFD 248
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F +P+G++GD YDRYLVRM EM +S +I RQ + +L G V+ DP + P + +
Sbjct: 249 FVVPLGQNGDTYDRYLVRMEEMVQSNRICRQVLEKL----PEGEVNVDDPTVSLPPKEKV 304
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
++E+LI+HF L G P GEVY A+EAPKGE G Y+ISDG KP+R K+R P + +
Sbjct: 305 YNNIEALINHFLLIERGLTPPAGEVYHAIEAPKGELGFYIISDGSPKPFRVKVRGPSFIN 364
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
L + L KG L+D+ A++G++DIV +VDR
Sbjct: 365 LSPTKILAKGRLLSDIIALIGTMDIVLADVDR 396
>gi|313238400|emb|CBY13477.1| unnamed protein product [Oikopleura dioica]
Length = 476
Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats.
Identities = 227/393 (57%), Positives = 292/393 (74%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
KK + +NFGPQHPAAHGVLRLILEL GE V R DPHIGLLHRGTEKLIE KT+ QA+P
Sbjct: 88 KKLETMQLNFGPQHPAAHGVLRLILELHGENVMRCDPHIGLLHRGTEKLIEYKTYNQALP 147
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDY + M E ++LAVEKL I++P+R + IR +++EI RIL+H + V A+D+
Sbjct: 148 YFDRLDYCSMMINEQCFSLAVEKLCNIDVPLRAKYIRTMFAEITRILNHTVFVGCGALDL 207
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+TP W FEEREKL FYER G+RMHAAY RPGGV+ D+P L +DI W F S
Sbjct: 208 GAMTPFFWLFEEREKLYEFYERVCGARMHAAYIRPGGVNLDLPIGLCDDIYDWAKRFSSR 267
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L+++ ++LT NR+++ RNV++G V + A WG SG M+RGSG WD+RK PY+ Y +
Sbjct: 268 LDEVEEMLTENRVWRARNVDVGIVSYDSAQEWGMSGCMLRGSGIKWDIRKVAPYDAYDLV 327
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FD+PIG GDC+DRYL RM EMRES++II QC+N++ G + A D K PP R
Sbjct: 328 EFDVPIGTRGDCFDRYLCRMEEMRESIRIIHQCLNQM----PEGDIKADDRKFTPPNRLS 383
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK ME++IHHFK +TEGY VP G Y AVEAPKGEFGVYL+SDG ++PYRCKI+APG+A
Sbjct: 384 MKNDMEAVIHHFKFWTEGYQVPPGATYTAVEAPKGEFGVYLVSDGTSRPYRCKIKAPGFA 443
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HL A++ + G+ L D+ I+G++D+VFGE+DR
Sbjct: 444 HLGAIDHVATGNNLPDICGIVGTMDLVFGEIDR 476
>gi|307293267|ref|ZP_07573113.1| NADH dehydrogenase I, D subunit [Sphingobium chlorophenolicum L-1]
gi|306881333|gb|EFN12549.1| NADH dehydrogenase I, D subunit [Sphingobium chlorophenolicum L-1]
Length = 411
Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats.
Identities = 244/395 (61%), Positives = 316/395 (80%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +++TINFGPQHPAAHGVLRL++ELDGEIVER DPH+GLLHRGTEKLIE KT+LQA+
Sbjct: 21 DTEIQNYTINFGPQHPAAHGVLRLVMELDGEIVERCDPHVGLLHRGTEKLIEYKTYLQAL 80
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDY +P+ EH+Y LA+EKLL +E+P+R Q +RV ++E+ RI +H+LN+ + MD
Sbjct: 81 PYFDRLDYCSPLGMEHSYVLAIEKLLNLEVPLRAQYLRVFFAELTRICNHMLNLGSHVMD 140
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD-SFP 181
VGA+TP LW FE RE + F+ERASG+RMH+A+FRPGGVHQD+P +L+ DI W D P
Sbjct: 141 VGAMTPNLWLFEIREDCLNFFERASGARMHSAWFRPGGVHQDVPLKLLTDIADWLDTRLP 200
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
D L+ NRIFKQRNV+I V EDA WGFSG MIRGSG WD+RK+QPY+ Y
Sbjct: 201 RLFEDAMSLVVDNRIFKQRNVDIAVVSKEDALKWGFSGPMIRGSGIPWDIRKAQPYDVYD 260
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
++FD+P+G + DCYDR++VR+ E+R+S +I++QC++ + GP+++ D K+ PPKR
Sbjct: 261 RMEFDVPVGTNFDCYDRFMVRVEEVRQSARIMKQCLSEM----PEGPIASFDRKVSPPKR 316
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+MKRSME+LIHHFKLYTEG+HVP GEVY A E+PKGEFGVYL++DG NKPYRCKIR
Sbjct: 317 GEMKRSMEALIHHFKLYTEGFHVPAGEVYVATESPKGEFGVYLVADGSNKPYRCKIRPTA 376
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++HLQAM+F+ KGH LAD +A+LG++DIVFGE DR
Sbjct: 377 FSHLQAMDFMMKGHMLADTTAVLGAMDIVFGECDR 411
>gi|54295615|ref|YP_128030.1| NADH dehydrogenase subunit D [Legionella pneumophila str. Lens]
gi|81679123|sp|Q5WT23|NUOD_LEGPL RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|229891493|sp|Q5ZRU1|NUOD_LEGPH RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|53755447|emb|CAH16943.1| NADH dehydrogenase I chain D [Legionella pneumophila str. Lens]
gi|307611655|emb|CBX01346.1| NADH dehydrogenase I chain D [Legionella pneumophila 130b]
Length = 417
Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats.
Identities = 228/417 (54%), Positives = 298/417 (71%), Gaps = 27/417 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ +++T+NFGPQHPAAHGVLRL+LEL+GE + R DPHIGLLHR TEKL ETK ++Q++ Y
Sbjct: 3 ELKNYTLNFGPQHPAAHGVLRLVLELEGETIVRADPHIGLLHRATEKLAETKPYIQSIGY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDYV+ M EHAY +A+EKLLGIE P+R + IR ++ E+ RIL+HLL + A+D+G
Sbjct: 63 MDRLDYVSMMCNEHAYVMAIEKLLGIEPPLRAKYIRTMFDEVTRILNHLLWLGATALDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL--------------- 169
A+T L+ F ERE L YE SG+RMHA Y+RPGGV +D+P +
Sbjct: 123 AMTVFLYCFREREDLFDCYEAVSGARMHATYYRPGGVARDLPDTMPQYKPSRWHSEREIE 182
Query: 170 ----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
++ + + + FP +++ LLT NRI+KQR V+IG V E+A WGF+G
Sbjct: 183 KKNHNRQGSLLDFLWDFTERFPHCVDEYETLLTDNRIWKQRTVDIGVVSPENALQWGFTG 242
Query: 220 VMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR 279
M+RGSG AWDLRK Q Y Y ++FDIP+GK GDCYDRYLVR+ E+R+S +IIRQC+
Sbjct: 243 PMLRGSGIAWDLRKKQSYAAYDRVEFDIPVGKTGDCYDRYLVRVEELRQSNRIIRQCIEW 302
Query: 280 LLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGE 339
L + GPV D K+ PP+R MK ME+LIHHFKL+TEG+ +P GEVY++VEAPKGE
Sbjct: 303 L--RKHPGPVKVDDYKVSPPRRVVMKHDMEALIHHFKLFTEGFCLPRGEVYSSVEAPKGE 360
Query: 340 FGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
FG+Y++SDG NKPYR KIRAPG+AHL + + + +GH LAD AIL S DIVFGE+DR
Sbjct: 361 FGIYMVSDGANKPYRLKIRAPGFAHLSSFDDMVRGHMLADGVAILASQDIVFGEIDR 417
>gi|28198174|ref|NP_778488.1| NADH dehydrogenase subunit D [Xylella fastidiosa Temecula1]
gi|182680808|ref|YP_001828968.1| NADH dehydrogenase subunit D [Xylella fastidiosa M23]
gi|81725065|sp|Q87EQ2|NUOD_XYLFT RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|229891307|sp|B2I787|NUOD_XYLF2 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|28056244|gb|AAO28137.1| NADH-ubiquinone oxidoreductase NQO4 subunit [Xylella fastidiosa
Temecula1]
gi|182630918|gb|ACB91694.1| NADH dehydrogenase I, D subunit [Xylella fastidiosa M23]
gi|307579276|gb|ADN63245.1| NADH dehydrogenase subunit D [Xylella fastidiosa subsp. fastidiosa
GB514]
Length = 435
Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats.
Identities = 231/419 (55%), Positives = 299/419 (71%), Gaps = 27/419 (6%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K++ R++T+NFGPQHPAAHGVLRLILE+DGE V R DPHIGLLHRGTEKL E+K F Q++
Sbjct: 19 KQEIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHRGTEKLAESKPFNQSI 78
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
Y DRLDYV+ M EHAY A+E L+GI+ P R Q IR ++ EI RIL+HL+ + + A+D
Sbjct: 79 GYMDRLDYVSMMCNEHAYVRAIETLIGIQAPERAQYIRTMFDEITRILNHLMWLGSNALD 138
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP--------------- 167
+GA+ L+ F ERE+LM YE SG+RMHAAY+RPGGV++D+P
Sbjct: 139 LGAMAVMLYAFREREELMDVYEAISGARMHAAYYRPGGVYRDLPDTMPKYKESRWHKGKA 198
Query: 168 ----------ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF 217
+++ + + D+FP +++ LLT NRI+KQR V +G ++ + A WG
Sbjct: 199 LKRLNAAREGSMLDFLEHFTDTFPQRIDEYETLLTDNRIWKQRTVGVGVIEPDVAKAWGM 258
Query: 218 SGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCV 277
+GVM+RGSG AWDLRK QPY Y +DFDIP+G GDCYDRYL R+ EMRES +II+QCV
Sbjct: 259 TGVMLRGSGIAWDLRKKQPYAKYDAVDFDIPLGTCGDCYDRYLCRVAEMRESNRIIKQCV 318
Query: 278 NRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPK 337
L K G V + K+ PPKR MK ME+LIHHFKL++EGY VP GE Y+AVEAPK
Sbjct: 319 QWL--KMNPGQVMVENCKVAPPKRESMKDDMEALIHHFKLFSEGYCVPAGETYSAVEAPK 376
Query: 338 GEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GEFG YLISDG NKP+R +RAPG+AHL +M+ + +G+ LADV A++G+ D+VFGEVDR
Sbjct: 377 GEFGCYLISDGANKPFRVHLRAPGFAHLSSMDAVVRGYMLADVVAMIGTYDLVFGEVDR 435
>gi|194365804|ref|YP_002028414.1| NADH dehydrogenase subunit D [Stenotrophomonas maltophilia R551-3]
gi|218534464|sp|B4SJH6|NUOD1_STRM5 RecName: Full=NADH-quinone oxidoreductase subunit D 1; AltName:
Full=NADH dehydrogenase I subunit D 1; AltName:
Full=NDH-1 subunit D 1
gi|194348608|gb|ACF51731.1| NADH dehydrogenase I, D subunit [Stenotrophomonas maltophilia
R551-3]
Length = 436
Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats.
Identities = 231/419 (55%), Positives = 297/419 (70%), Gaps = 27/419 (6%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ R++ +N GPQHPAAHGVLRL+LE+DGE V R DPH+GLLHRGTEKL E+K F Q++
Sbjct: 20 DTEIRNYVMNLGPQHPAAHGVLRLVLEMDGETVVRADPHVGLLHRGTEKLAESKPFNQSI 79
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
Y DRLDYV+ M EHAY A+E LLGIE PIR Q IR ++ EI RIL+HL+N+ T A+D
Sbjct: 80 GYMDRLDYVSMMCNEHAYVRAIETLLGIEAPIRAQYIRTMFDEITRILNHLMNIGTGALD 139
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL------------- 169
+GA+ L+ F ERE+LM YE SG+RMHA Y+RPGGV++++P ++
Sbjct: 140 LGAMAVMLYAFREREELMDCYEAVSGARMHATYYRPGGVYRELPEQMPKYKESRWKTGKQ 199
Query: 170 ------------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF 217
++ I + FP+ +++ LLT NRI+KQR V IG V + A WG
Sbjct: 200 LRRLNAAREGSLLDFIENFTREFPNRIDEYETLLTDNRIWKQRTVGIGVVSPQQAMEWGM 259
Query: 218 SGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCV 277
+GVM+RGSG AWDLRK +PY Y +DFDIP+G GDCYDRYL R+ EMR+S +IIRQCV
Sbjct: 260 TGVMLRGSGVAWDLRKKRPYAKYDAVDFDIPVGTAGDCYDRYLCRVAEMRQSNRIIRQCV 319
Query: 278 NRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPK 337
+ L + GPV + K+ PP R +MK ME+LIHHFKL++EGY VP GE YAAVEAPK
Sbjct: 320 DWL--RANPGPVMLHNFKVAPPSRQEMKSDMEALIHHFKLFSEGYQVPAGETYAAVEAPK 377
Query: 338 GEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GEFG YLISDG NKP+R +RAPG+AHL +++ + +GH LADV A++G+ DIVFGEVDR
Sbjct: 378 GEFGCYLISDGANKPFRVHLRAPGFAHLSSLDEIVRGHMLADVVAMIGTYDIVFGEVDR 436
>gi|160871554|ref|ZP_02061686.1| NADH dehydrogenase (quinone), d subunit [Rickettsiella grylli]
gi|159120353|gb|EDP45691.1| NADH dehydrogenase (quinone), d subunit [Rickettsiella grylli]
Length = 417
Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats.
Identities = 236/417 (56%), Positives = 294/417 (70%), Gaps = 27/417 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ R++T+NFGPQHPAAHGVLRLILELDGE+++ D HIGLLHR TEKL E+K + Q++ Y
Sbjct: 3 EIRNYTLNFGPQHPAAHGVLRLILELDGEVIQSADAHIGLLHRATEKLAESKPYNQSIGY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDYV+ M EHAY LA+EKLLG+ P R Q IRV++ EI RIL+HLL + A+D+G
Sbjct: 63 MDRLDYVSMMCNEHAYVLAIEKLLGVTPPKRAQYIRVMFDEITRILNHLLWLGAHALDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL--------------- 169
A+T L+ F ERE L+ YE SGSRMHA Y+RPGGV++D+P ++
Sbjct: 123 AMTVFLYCFREREDLIDCYEAVSGSRMHATYYRPGGVYRDLPDKMPQYKPSQWHNEKEIR 182
Query: 170 ----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
++ I + FP +++ LLT NRI+KQR V IG + E A G +G
Sbjct: 183 EMNANREGSLLDFIENFVTRFPQLIDEYETLLTDNRIWKQRTVGIGVLSAERALQLGCTG 242
Query: 220 VMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR 279
++R SG AWDLRK QPYE Y ELDFDIPIGKHGDCYDRYLVR+ EMR+S +I+QCV
Sbjct: 243 PILRASGVAWDLRKKQPYEVYDELDFDIPIGKHGDCYDRYLVRVEEMRQSNALIKQCVGW 302
Query: 280 LLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGE 339
L + GPV+ KIVPP R MK MESLIHHFKL++EGY VP GEVYAA+E PKGE
Sbjct: 303 L--RANPGPVTLKKHKIVPPTRLQMKEDMESLIHHFKLFSEGYCVPPGEVYAAIEHPKGE 360
Query: 340 FGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
FG+Y++SDG NKPYR KIR+ G+ HL A+ L GH +AD+ AIL SLDIVFGE+DR
Sbjct: 361 FGIYMVSDGANKPYRVKIRSAGFPHLAALNELVSGHMIADLVAILSSLDIVFGEIDR 417
>gi|170113910|ref|XP_001888153.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164636820|gb|EDR01111.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 459
Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats.
Identities = 247/395 (62%), Positives = 304/395 (76%), Gaps = 8/395 (2%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ K R FT+NFGPQHPAAHGVLR+ILEL+GE + R DPHIGLLHRGTEKLIE KT++QA
Sbjct: 73 EDAKMRHFTVNFGPQHPAAHGVLRMILELNGEEILRADPHIGLLHRGTEKLIEYKTYIQA 132
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+PYFDRLDYV+ M E Y+LAVEKLL IE+P R Q IRVL+ EI RIL+HL+ + T M
Sbjct: 133 LPYFDRLDYVSMMTNELCYSLAVEKLLNIEVPARAQWIRVLFGEITRILNHLMAILTHVM 192
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
DVG LTP LWGFEEREKLM FYER SG+R+HAAY RPGGV D+P L++DI W F
Sbjct: 193 DVGGLTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVAFDLPHGLLDDIFKWGTQFS 252
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
S +++I +++TGNRI+K+R + IG V + A + FSGVM+RGSG AWDLRK PY+ Y
Sbjct: 253 SRVDEIEEVVTGNRIWKERTIGIGPVTAKQALDYSFSGVMLRGSGIAWDLRKVAPYDKYD 312
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
E++FDIP+GK+GDCYDRYL R+ EMRES++II Q +N++ G V D K+VPP R
Sbjct: 313 EVEFDIPVGKNGDCYDRYLCRVQEMRESLRIISQALNKIT----PGAVKVDDHKLVPPPR 368
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
A MK SMESLIHHFK+++EGY VP GE Y+A+EAPKGE GVYL+SDG N+PYRC IRAPG
Sbjct: 369 AMMKESMESLIHHFKIFSEGYSVPPGETYSAIEAPKGEMGVYLVSDGSNRPYRCSIRAPG 428
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AHL +F+ + H LAD AI+G+ GEVDR
Sbjct: 429 FAHLAGSDFMMRQHMLADAVAIIGT----MGEVDR 459
>gi|313217537|emb|CBY38614.1| unnamed protein product [Oikopleura dioica]
Length = 476
Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats.
Identities = 227/393 (57%), Positives = 292/393 (74%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
KK + +NFGPQHPAAHGVLRLILEL GE V R DPHIGLLHRGTEKLIE KT+ QA+P
Sbjct: 88 KKLETMQLNFGPQHPAAHGVLRLILELHGENVMRCDPHIGLLHRGTEKLIEYKTYNQALP 147
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDY + M E ++LAVEKL I++P+R + IR +++EI RIL+H + V A+D+
Sbjct: 148 YFDRLDYCSMMINEQCFSLAVEKLCNIDVPLRAKYIRTMFAEITRILNHTVFVGCGALDL 207
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+TP W FEEREKL FYER G+RMHAAY RPGGV+ D+P L +DI W F S
Sbjct: 208 GAMTPFFWLFEEREKLYEFYERVCGARMHAAYVRPGGVNLDLPIGLCDDIYDWAKRFSSR 267
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L+++ ++LT NR+++ RNV++G V + A WG SG M+RGSG WD+RK PY+ Y +
Sbjct: 268 LDEVEEMLTENRVWRARNVDVGIVSYDSAQEWGMSGCMLRGSGIKWDIRKVAPYDAYDLV 327
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FD+PIG GDC+DRYL RM EMRES++II QC+N++ G + A D K PP R
Sbjct: 328 EFDVPIGTRGDCFDRYLCRMEEMRESIRIIHQCLNQM----PEGDIKADDRKFTPPNRLS 383
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK ME++IHHFK +TEGY VP G Y AVEAPKGEFGVYL+SDG ++PYRCKI+APG+A
Sbjct: 384 MKNDMEAVIHHFKFWTEGYQVPPGATYTAVEAPKGEFGVYLVSDGTSRPYRCKIKAPGFA 443
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HL A++ + G+ L D+ I+G++D+VFGE+DR
Sbjct: 444 HLGAIDHVATGNNLPDICGIVGTMDLVFGEIDR 476
>gi|254520905|ref|ZP_05132960.1| NADH dehydrogenase (quinone), D subunit [Stenotrophomonas sp.
SKA14]
gi|219718496|gb|EED37021.1| NADH dehydrogenase (quinone), D subunit [Stenotrophomonas sp.
SKA14]
Length = 435
Score = 428 bits (1102), Expect = e-118, Method: Composition-based stats.
Identities = 234/419 (55%), Positives = 300/419 (71%), Gaps = 27/419 (6%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ R++T+NFGPQHPAAHGVLRLILE+DGE + R DPH+GLLHRGTEKL E+K F Q++
Sbjct: 19 RQEIRNYTMNFGPQHPAAHGVLRLILEMDGETIMRADPHVGLLHRGTEKLAESKPFNQSI 78
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
Y DRLDYV+ M EHAY A+E L+GIE P R Q IR +Y EI RIL+HL+ + + A+D
Sbjct: 79 GYMDRLDYVSMMCNEHAYVRAIETLMGIEAPERAQYIRTMYDEITRILNHLMWLGSNALD 138
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL------------- 169
+GA+ L+ F ERE+LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 139 LGAMAVMLYAFREREELMDCYEAVSGARMHAAYYRPGGVYRDLPDHMPKYKESRWHKGKA 198
Query: 170 ------------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF 217
++ + + + FP +++ LLT NRI+KQR V IG V E A WG
Sbjct: 199 LKQLNASREGSLLDFLENFTNEFPGRVDEYETLLTDNRIWKQRTVGIGVVTPELAHQWGM 258
Query: 218 SGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCV 277
+GVM+RGSG AWDLRK +PY Y +DFDIP+GK GDCYDRYLVR+ EMRES +II+QCV
Sbjct: 259 TGVMLRGSGIAWDLRKKRPYAKYDAVDFDIPLGKEGDCYDRYLVRVAEMRESNRIIKQCV 318
Query: 278 NRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPK 337
L GPV + K+ PPKR DMK ME+LIHHFKL++EGY VP GE YAAVEAPK
Sbjct: 319 AWLKA--NPGPVMVKNFKVAPPKREDMKDDMEALIHHFKLFSEGYCVPAGETYAAVEAPK 376
Query: 338 GEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GEFG YL+SDG NKP+R +RAPG+AHL +++ + +GH LADV A++G+ D+VFGEVDR
Sbjct: 377 GEFGCYLVSDGANKPFRVHLRAPGFAHLSSIDSVVRGHMLADVVAMIGTYDLVFGEVDR 435
>gi|194366601|ref|YP_002029211.1| NADH dehydrogenase subunit D [Stenotrophomonas maltophilia R551-3]
gi|229891265|sp|B4SQT3|NUOD2_STRM5 RecName: Full=NADH-quinone oxidoreductase subunit D 2; AltName:
Full=NADH dehydrogenase I subunit D 2; AltName:
Full=NDH-1 subunit D 2
gi|194349405|gb|ACF52528.1| NADH dehydrogenase I, D subunit [Stenotrophomonas maltophilia
R551-3]
Length = 435
Score = 428 bits (1102), Expect = e-118, Method: Composition-based stats.
Identities = 233/419 (55%), Positives = 300/419 (71%), Gaps = 27/419 (6%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ R++T+NFGPQHPAAHGVLRLILE+DGE + R DPH+GLLHRGTEKL E+K F Q++
Sbjct: 19 RQEIRNYTMNFGPQHPAAHGVLRLILEMDGETIMRADPHVGLLHRGTEKLAESKPFNQSI 78
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
Y DRLDYV+ M EHAY ++E L+GIE P R Q IR L+ EI RIL+HL+ + + A+D
Sbjct: 79 GYMDRLDYVSMMCNEHAYVRSIETLMGIEAPERAQYIRTLFDEITRILNHLMWLGSNALD 138
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL------------- 169
+GA+ L+ F ERE+LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 139 LGAMAVMLYAFREREELMDCYEAVSGARMHAAYYRPGGVYRDLPDHMPKYKESRWHKGKA 198
Query: 170 ------------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF 217
++ + + + FP +++ LLT NRI+KQR V IG V E A WG
Sbjct: 199 LKNLNAAREGSLLDFLENFTNEFPGRVDEYETLLTDNRIWKQRTVGIGVVTPELAHQWGM 258
Query: 218 SGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCV 277
+GVM+RGSG AWDLRK +PY Y +DFDIP+GK GDCYDRYLVR+ EMRES +II+QCV
Sbjct: 259 TGVMLRGSGIAWDLRKKRPYAKYDAVDFDIPLGKEGDCYDRYLVRIAEMRESNRIIKQCV 318
Query: 278 NRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPK 337
L GPV + K+ PPKR DMK ME+LIHHFKL++EGY VP GE YAAVEAPK
Sbjct: 319 AWLKA--NPGPVMVKNFKVAPPKREDMKDDMEALIHHFKLFSEGYCVPAGETYAAVEAPK 376
Query: 338 GEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GEFG YL+SDG NKP+R +RAPG+AHL +++ + +GH LADV A++G+ D+VFGEVDR
Sbjct: 377 GEFGCYLVSDGANKPFRVHLRAPGFAHLSSIDSIVRGHMLADVVAMIGTYDLVFGEVDR 435
>gi|190575275|ref|YP_001973120.1| NADH dehydrogenase subunit D [Stenotrophomonas maltophilia K279a]
gi|229891302|sp|B2FNX6|NUOD_STRMK RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|190013197|emb|CAQ46830.1| putative NADH dehydrogenase I chain D [Stenotrophomonas maltophilia
K279a]
Length = 435
Score = 428 bits (1102), Expect = e-118, Method: Composition-based stats.
Identities = 232/419 (55%), Positives = 299/419 (71%), Gaps = 27/419 (6%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ R++T+NFGPQHPAAHGVLRLILE+DGE + R DPH+GLLHRGTEKL E+K F Q++
Sbjct: 19 RQEIRNYTMNFGPQHPAAHGVLRLILEMDGETIMRADPHVGLLHRGTEKLAESKPFNQSI 78
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
Y DRLDYV+ M EHAY A+E L+GIE P R Q IR +Y EI RIL+HL+ + + A+D
Sbjct: 79 GYMDRLDYVSMMCNEHAYVRAIETLMGIEAPERAQYIRTMYDEITRILNHLMWLGSNALD 138
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL------------- 169
+GA+ L+ F ERE+LM YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 139 LGAMAVMLYAFREREELMDCYEAVSGARMHAAYYRPGGVYRDLPDHMPKYKESRWHKGKA 198
Query: 170 ------------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF 217
++ + + FP +++ LLT NRI+KQR V IG V E A WG
Sbjct: 199 LKQLNASREGSLLDFLENFTVEFPKRIDEYETLLTDNRIWKQRTVGIGVVTPELAHQWGM 258
Query: 218 SGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCV 277
+GVM+RGSG AWDLRK +PY Y +DFDIP+GK GDCYDRYLVR+ EMRES +II+QCV
Sbjct: 259 TGVMLRGSGVAWDLRKKRPYAKYDAVDFDIPLGKEGDCYDRYLVRVAEMRESNRIIKQCV 318
Query: 278 NRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPK 337
L GPV + K+ PP+R DMK ME+LIHHFKL++EGY VP GE Y+AVEAPK
Sbjct: 319 AWLKA--NPGPVMVKNFKVAPPRREDMKDDMEALIHHFKLFSEGYCVPAGETYSAVEAPK 376
Query: 338 GEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GEFG YL+SDG NKP+R +RAPG+AHL +++ + +GH LADV A++G+ D+VFGEVDR
Sbjct: 377 GEFGCYLVSDGANKPFRVHLRAPGFAHLSSIDSIVRGHMLADVVAMIGTYDLVFGEVDR 435
>gi|218295763|ref|ZP_03496559.1| NADH dehydrogenase I, D subunit [Thermus aquaticus Y51MC23]
gi|218243922|gb|EED10449.1| NADH dehydrogenase I, D subunit [Thermus aquaticus Y51MC23]
Length = 406
Score = 428 bits (1102), Expect = e-118, Method: Composition-based stats.
Identities = 174/394 (44%), Positives = 258/394 (65%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ T+N GPQHP+ HGVLRL++ L GE V V PH+G LH G EK +E +T+LQ +
Sbjct: 17 ELRTEVMTLNVGPQHPSTHGVLRLVVTLSGEEVLEVVPHVGYLHTGFEKNMEYRTYLQNL 76
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
Y R+DY+ + + AYALAVEKL+G +P R + IR++ +E+ R+ SHL+ + T +D
Sbjct: 77 TYTPRMDYLHSVAHDLAYALAVEKLVGAVVPPRAETIRIILNELSRLASHLVFLGTGLLD 136
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GALTP + F ERE ++ +E +G R H Y R GGV +D+P E V ++ + P
Sbjct: 137 LGALTPFFYAFREREAILDLFEWVTGQRFHHNYIRIGGVKEDLPEEFVPELKKLLEVLPH 196
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+++ L + IF +R +G + E A G +G +R SG +D+RK+ PY Y
Sbjct: 197 RIDEYEALFAESPIFYERARGVGVIPPEVAINLGLTGGSLRASGVNYDVRKAYPYGGYET 256
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
FD+P+G+ GD +DR L+R+ EMRESVKI++Q + RL + GP+ +P+I PP R
Sbjct: 257 YQFDVPLGERGDVFDRMLIRIREMRESVKILKQALERL----EPGPIRDPNPQITPPPRP 312
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
++ SME++I+HFK YTEG+H P GEVY E+ +GE G Y++SDGG+ PYR K+RAP +
Sbjct: 313 LLETSMEAVIYHFKHYTEGFHPPKGEVYVPTESARGELGYYIVSDGGSMPYRVKVRAPSF 372
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ++ + CKG Q+ D+ AI+ SLD V G+VDR
Sbjct: 373 VNLQSLPYACKGEQVPDMVAIIASLDPVMGDVDR 406
>gi|11466215|ref|NP_066538.1| NADH dehydrogenase subunit 7 [Naegleria gruberi]
gi|10444250|gb|AAG17816.1|AF288092_41 NADH dehydrogenase subunit 7 [Naegleria gruberi]
Length = 395
Score = 428 bits (1102), Expect = e-118, Method: Composition-based stats.
Identities = 249/397 (62%), Positives = 308/397 (77%), Gaps = 5/397 (1%)
Query: 1 MDKKKS-RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFL 59
+DKK++ +F +NFGPQHPAAHGVLRLI+ELDGEI++ DPHIGLLHRGTEKL+E KT++
Sbjct: 3 LDKKQTFNNFILNFGPQHPAAHGVLRLIVELDGEIIKNADPHIGLLHRGTEKLLEYKTYI 62
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
Q +PYFDRLDYV+ M QEH Y LA+E+LL E+P+R Q IRVL+SEI R+L+HLL++TT
Sbjct: 63 QGLPYFDRLDYVSMMCQEHTYCLAIERLLKCEVPLRAQYIRVLFSEITRLLNHLLSITTH 122
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
AMDVGALTP LW FEEREKLM FYER SG+RMHA YFRPGGV D+P L+ DI + S
Sbjct: 123 AMDVGALTPFLWAFEEREKLMEFYERVSGARMHANYFRPGGVSYDLPKGLLHDIYDFIYS 182
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
F S ++++ +LLT NRI+KQR V+IG V DA GF+GVM+RGSG WDLRK +PYE
Sbjct: 183 FASRIDEMEELLTTNRIWKQRLVDIGVVNYRDALDMGFTGVMLRGSGIPWDLRKCEPYEI 242
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y +L+F IP+G +GDCYDRYLVRM EMR+S+ II QC+N++ G V + KI PP
Sbjct: 243 YKQLNFYIPVGIYGDCYDRYLVRMSEMRQSISIIHQCLNKIPN----GLVRVDNHKITPP 298
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
R +K SMESLIHHFK Y+EG +VP G Y VEAPKGE G L+S+G N PYRCKIR+
Sbjct: 299 YRKQIKTSMESLIHHFKFYSEGINVPQGISYGGVEAPKGETGALLVSNGSNMPYRCKIRS 358
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
PGYAHLQ + + GH +AD+ ++G+LDIVFGEVDR
Sbjct: 359 PGYAHLQGINHVISGHMIADLVTVIGTLDIVFGEVDR 395
>gi|251773164|gb|EES53717.1| NADH dehydrogenase (ubiquinone), D subunit [Leptospirillum
ferrodiazotrophum]
Length = 396
Score = 428 bits (1102), Expect = e-118, Method: Composition-based stats.
Identities = 168/392 (42%), Positives = 256/392 (65%), Gaps = 4/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K+ F +N GPQHP+ HGVLR++L+LDGE +++ P +G LHRGTEK+ E +T+ Q +P
Sbjct: 9 KTEQFLLNMGPQHPSTHGVLRVLLDLDGERIKKAVPDLGYLHRGTEKIAEYRTYNQIIPL 68
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDYV+ M +A+ AVEKLL +++P R + IR + +E+ RI++HL + TQA+D+G
Sbjct: 69 TDRLDYVSAMANNYAFVRAVEKLLQLKVPARAEYIRTIVAEMQRIVNHLFWLGTQALDIG 128
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++ + F ERE L+ +E+ G+R+ Y+R GGV D+ ++++ + + ++F +
Sbjct: 129 AMSVFFYTFREREVLLDLFEKICGARLTTNYYRVGGVEGDLTRDVIDALYSFVETFEGHI 188
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ + LL NRI+ R +I + EDA +G SG +RGSG +DLRK +PY Y +++
Sbjct: 189 KEYNTLLETNRIWLARTKHIAVITGEDAVNFGLSGPTLRGSGVDYDLRKYEPYAAYDQVE 248
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
+ +P+G +GD YDRY +R+ EMR+S IIRQC+++L GP D K+ P + +
Sbjct: 249 WSVPVGHNGDIYDRYYIRVEEMRQSASIIRQCLDKL----PEGPFMTDDHKVSFPPKGRV 304
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
+ME+LIHHF L EG+ P G+ Y E PKGE G Y++SDG KPYR KIRAP +
Sbjct: 305 MHNMETLIHHFLLVVEGFKTPPGDTYCGTETPKGELGFYIVSDGSGKPYRMKIRAPSFVS 364
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ A + + +G+ +AD+ I G+ DIV GE DR
Sbjct: 365 MGAFDHMARGYMIADIVTIFGTYDIVMGECDR 396
>gi|332184793|gb|AEE27047.1| NADH-ubiquinone oxidoreductase chain D [Francisella cf. novicida
3523]
Length = 417
Score = 428 bits (1102), Expect = e-118, Method: Composition-based stats.
Identities = 230/415 (55%), Positives = 295/415 (71%), Gaps = 27/415 (6%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+++T+NFGP HPAAHGVLRLILELDGE V R DPH+GLLHRGTEKL E K + Q++ Y D
Sbjct: 5 KNYTLNFGPVHPAAHGVLRLILELDGENVVRADPHVGLLHRGTEKLAEFKPYNQSIGYMD 64
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYV+ M EHAY +A+EKLL +E+P R + IRV+++E+ RIL+HLL V +D+GA+
Sbjct: 65 RLDYVSMMCNEHAYVMAIEKLLQLEVPERAKYIRVMFAEMTRILNHLLWVAACGIDLGAM 124
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE------------------ 168
T L+ F RE L YE SG+RMHAAYFRPGGV +D+P +
Sbjct: 125 TVFLYAFRVREDLFDCYEAVSGARMHAAYFRPGGVARDLPTQMPQYQKTRFTSKRKAKKL 184
Query: 169 -------LVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVM 221
+++ + + F +L++I LLT NR++KQR V+IG V + A GF+G M
Sbjct: 185 NEPRQGSMLDFLDHFVVDFEKSLDEIDTLLTDNRLWKQRTVDIGVVSAKRAKELGFTGPM 244
Query: 222 IRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL 281
+RGSG AWDLRK+QPYE Y +L+FDIPIG +GDCYDRYLVRM EMRES K+I+QCV+ L
Sbjct: 245 LRGSGVAWDLRKTQPYEVYDKLEFDIPIGANGDCYDRYLVRMAEMRESNKLIKQCVDWL- 303
Query: 282 GKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFG 341
+ GPV + + K+ PPKR MK +ME LIHHFKL++EGY P GEVY E PKGEFG
Sbjct: 304 -RANPGPVLSDNHKVAPPKRNAMKNNMEELIHHFKLFSEGYCTPEGEVYVGTEHPKGEFG 362
Query: 342 VYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
VY+ SDG NKPYR K+RAPG+AH+ AM+ L GH LAD AI+ ++D+VFG+VDR
Sbjct: 363 VYIKSDGANKPYRLKMRAPGFAHISAMDELLSGHMLADTPAIISTIDVVFGDVDR 417
>gi|296283833|ref|ZP_06861831.1| NADH dehydrogenase subunit D [Citromicrobium bathyomarinum JL354]
Length = 405
Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats.
Identities = 245/395 (62%), Positives = 313/395 (79%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++ ++TINFGPQHPAAHGVLR+++ELDGEIVERVDPH+GLLHRGTEKLIE KT+LQA+
Sbjct: 15 DEQITNYTINFGPQHPAAHGVLRMVMELDGEIVERVDPHVGLLHRGTEKLIEHKTYLQAL 74
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDY +P+ EH+Y LA+EKLL +E+PIR Q +RVL++E+ R+ +H LN+ MD
Sbjct: 75 PYFDRLDYCSPLCMEHSYVLAIEKLLNLEVPIRAQYLRVLFAELTRMSNHFLNIGAHVMD 134
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD-SFP 181
VGA+TP LW FE RE M F+ERASG+RMH+A+FRPGGVHQD+P +L+ DIG W D P
Sbjct: 135 VGAMTPNLWIFELREDCMNFFERASGARMHSAWFRPGGVHQDVPEKLLVDIGEWLDNRVP 194
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
D L+ NRIFKQRNV+I V EDA WGFSG M+R +G WDLRKSQPY+ Y
Sbjct: 195 ELFGDAMSLVMDNRIFKQRNVDIAVVSREDAIKWGFSGPMLRAAGVPWDLRKSQPYDVYD 254
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+DF++P+G + DCYDR++VR+ E+ +S+KII+QC+ + GP+++ D K+ PPKR
Sbjct: 255 RMDFEVPVGTNSDCYDRFMVRVQEVYQSMKIIKQCLAEM----PTGPIASDDRKVSPPKR 310
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+MK+SME+LIHHFKLYTEG+HVP GEVY A E+PKGEFGVYL+SDG NKPYRCKIR
Sbjct: 311 GEMKQSMEALIHHFKLYTEGFHVPAGEVYVATESPKGEFGVYLVSDGSNKPYRCKIRPTA 370
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++HLQAM+ + KGH L D +AILG++D+VFGE DR
Sbjct: 371 FSHLQAMDMMTKGHMLPDATAILGAIDVVFGECDR 405
>gi|254373579|ref|ZP_04989065.1| hypothetical protein FTCG_01676 [Francisella tularensis subsp.
novicida GA99-3549]
gi|151571303|gb|EDN36957.1| hypothetical protein FTCG_01676 [Francisella novicida GA99-3549]
Length = 417
Score = 428 bits (1100), Expect = e-118, Method: Composition-based stats.
Identities = 232/415 (55%), Positives = 296/415 (71%), Gaps = 27/415 (6%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+++T+NFGP HPAAHGVLRLILELDGE V R DPH+GLLHRGTEKL E K + Q++ Y D
Sbjct: 5 KNYTLNFGPVHPAAHGVLRLILELDGENVVRADPHVGLLHRGTEKLAEFKPYNQSIGYMD 64
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYV+ M EHAY +A+EKLL +E+P R + IRV+++E+ RIL+HLL V +D+GA+
Sbjct: 65 RLDYVSMMCNEHAYVMAIEKLLQLEVPERAKYIRVMFAEMTRILNHLLWVAACGIDLGAM 124
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE------------------ 168
T L+ F RE L YE SG+RMHAAYFRPGGV +D+P +
Sbjct: 125 TVFLYAFRVREDLFDCYEAVSGARMHAAYFRPGGVARDLPTQMPQYQKTRFTSKRKAKKL 184
Query: 169 -------LVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVM 221
+++ + + F +L++I LLT NR++KQR V+IGTV E A GF+G M
Sbjct: 185 NKPRQGSMLDFLDHFVVDFEKSLDEIDTLLTDNRLWKQRTVDIGTVTAERAKELGFTGPM 244
Query: 222 IRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL 281
+RGSG AWDLRK+QPYE Y +L+FDIPIG +GDCYDRYLVRM EMRES K+I+QCV+ L
Sbjct: 245 LRGSGVAWDLRKTQPYEVYHKLEFDIPIGANGDCYDRYLVRMAEMRESNKLIKQCVDWL- 303
Query: 282 GKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFG 341
+ GPV + + K+ PPKR MK +ME LIHHFKL++EGY P GEVY E PKGEFG
Sbjct: 304 -RANPGPVLSDNHKVAPPKRNAMKNNMEELIHHFKLFSEGYCTPEGEVYVGTEHPKGEFG 362
Query: 342 VYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
VY+ SDG NKPYR K+RAPG+AH+ AM+ L GH LAD AI+ ++D+VFG+VDR
Sbjct: 363 VYIKSDGANKPYRLKMRAPGFAHISAMDELLSGHMLADTPAIISTIDVVFGDVDR 417
>gi|114330928|ref|YP_747150.1| NADH dehydrogenase subunit D [Nitrosomonas eutropha C91]
gi|122314156|sp|Q0AHJ7|NUOD_NITEC RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|114307942|gb|ABI59185.1| NADH dehydrogenase subunit D [Nitrosomonas eutropha C91]
Length = 417
Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats.
Identities = 239/418 (57%), Positives = 305/418 (72%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
R++T+NFGPQHPAAHGVLRL++ELDGE++ R DPHIGLLHR TEKL E KT++Q+VP
Sbjct: 2 ADIRNYTMNFGPQHPAAHGVLRLVMELDGEVIRRADPHIGLLHRATEKLAENKTYIQSVP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY +A+EKLL I++PIR Q IRV++ EI RIL+HLL + A+DV
Sbjct: 62 YMDRLDYVSMMVNEHAYVMAIEKLLQIDVPIRAQYIRVMFDEITRILNHLLWLGAHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+T L+ F ERE LM YE SG+R+HAAY+RPGGV++D+P +
Sbjct: 122 GAMTVFLYTFREREDLMDCYEAVSGARLHAAYYRPGGVYRDLPDSMPQYRSSAIHDEKTT 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ I + FP ++D LLT NRI+KQR V+IG V + A GFS
Sbjct: 182 TARNENRQGSLLDFIEDFTHRFPGYVDDYETLLTDNRIWKQRLVDIGVVSPDRAKALGFS 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G M+RGSG AWDLRK QPYE Y ++DFDIP+G +GDCYDRYLVR+ EMR+S II+QC++
Sbjct: 242 GPMLRGSGVAWDLRKKQPYEVYDQVDFDIPVGVNGDCYDRYLVRIEEMRQSNYIIKQCID 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
+ + GPV S+ K+ PP R MK++ME +IHHFKL+TEG HVP GEVYAAVE PKG
Sbjct: 302 WM--RKNPGPVITSNFKVAPPPRLSMKQNMEEMIHHFKLFTEGMHVPRGEVYAAVEHPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFG+Y+ISDG N PYR KIRAPG+AHL AM+ + +GH +AD+ AI+G+ DIVFGE+DR
Sbjct: 360 EFGIYIISDGANMPYRLKIRAPGFAHLAAMDEMARGHMIADLVAIIGTQDIVFGEIDR 417
>gi|71021681|ref|XP_761071.1| hypothetical protein UM04924.1 [Ustilago maydis 521]
gi|46100635|gb|EAK85868.1| hypothetical protein UM04924.1 [Ustilago maydis 521]
Length = 498
Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats.
Identities = 240/416 (57%), Positives = 304/416 (73%), Gaps = 30/416 (7%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVD--------------------------P 40
R FT+NFGPQHPAAHGVLRLILEL+GE + R D P
Sbjct: 87 RHFTVNFGPQHPAAHGVLRLILELNGEEILRTDLAICKANIADSIQSCLFWPSGVCILQP 146
Query: 41 HIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIR 100
H+GLLHRGTEKLIE KT+ QA+PYFDRLDYV+ M E Y+ AVEKLL IE+P R + IR
Sbjct: 147 HVGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMTNELCYSRAVEKLLNIEVPERAKWIR 206
Query: 101 VLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGG 160
++ EI RIL+H + V + MDVG LTP LW FEEREKLM FYER SG+R+HAAY RPGG
Sbjct: 207 TMFGEITRILNHCMAVLSHVMDVGGLTPFLWAFEEREKLMEFYERVSGARLHAAYVRPGG 266
Query: 161 VHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGV 220
V D+PP L++DI W F S +++I +++TGNRI+K R + IG V ++A +GFSGV
Sbjct: 267 VAYDLPPGLLDDIHKWATQFGSRVDEIEEVVTGNRIWKGRTIGIGKVTAQEALDYGFSGV 326
Query: 221 MIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRL 280
M+RGSG WD+RK PY+ Y +++FD+P+GK+GDCYDRYL R+ E R+S++II QC+N++
Sbjct: 327 MLRGSGIPWDIRKVAPYDAYDQVEFDVPVGKNGDCYDRYLCRVEEFRQSLRIIEQCLNKM 386
Query: 281 LGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEF 340
G + D K+VPP RA MK SMESLIHHFKL++EGY VP GE Y+A+EAPKGE
Sbjct: 387 PA----GQIKVDDHKLVPPPRATMKESMESLIHHFKLFSEGYAVPPGETYSAIEAPKGEM 442
Query: 341 GVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GVYL+SDG N+PYRCKIRAPG+AHL +F+ + H + D+ AI+G+LD+VFGEVDR
Sbjct: 443 GVYLVSDGTNRPYRCKIRAPGFAHLAGADFMARHHYIPDMVAIIGTLDLVFGEVDR 498
>gi|46200219|ref|YP_005886.1| NADH-quinone oxidoreductase chain D [Thermus thermophilus HB27]
gi|81405218|sp|Q72GD1|NUOD_THET2 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|46197847|gb|AAS82259.1| NADH-quinone oxidoreductase chain D [Thermus thermophilus HB27]
Length = 409
Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats.
Identities = 180/394 (45%), Positives = 258/394 (65%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ T+N GPQHP+ HGVLRL++ L GE V V PHIG LH G EK +E +T+LQ +
Sbjct: 20 ELRTEVMTLNVGPQHPSTHGVLRLMVTLSGEEVLEVVPHIGYLHTGFEKTMEHRTYLQNI 79
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
Y R+DY+ + AYALAVEKLLG +P R + IRV+ +E+ R+ SHL+ + T +D
Sbjct: 80 TYTPRMDYLHSFAHDLAYALAVEKLLGAVVPPRAETIRVILNELSRLASHLVFLGTGLLD 139
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GALTP + F ERE ++ +E +G R H Y R GGV +D+P E V ++ + + P
Sbjct: 140 LGALTPFFYAFRERETILDLFEWVTGQRFHHNYIRIGGVKEDLPEEFVPELKKFLEVMPH 199
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+++ L + IF +R +G + E A G +G +R SG +D+RK+ PY Y
Sbjct: 200 RIDEYEALFAESPIFYERARGVGVIPPEVAIDLGLTGGSLRASGVNYDVRKAYPYSGYET 259
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
FD+P+G+ GD +DR LVR+ EMRESVKII+Q + RL + GPV +P+I PP R
Sbjct: 260 YTFDVPLGERGDVFDRMLVRIREMRESVKIIKQALERL----EPGPVRDPNPQITPPPRH 315
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
++ SME++I+HFK YTEG+H P GEVY E+ +GE G Y++SDGG+ PYR K+RAP +
Sbjct: 316 LLETSMEAVIYHFKHYTEGFHPPKGEVYVPTESARGELGYYIVSDGGSMPYRVKVRAPSF 375
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ++ + CKG Q+ D+ AI+ SLD V G+VDR
Sbjct: 376 VNLQSLPYACKGEQVPDMVAIIASLDPVMGDVDR 409
>gi|218534472|sp|Q1GTK0|NUOD_SPHAL RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
Length = 405
Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats.
Identities = 250/390 (64%), Positives = 316/390 (81%), Gaps = 5/390 (1%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
++TINFGPQHPAAHGVLR+++ELDGEI+ERVDPH+GLLHRGTEKLIE KT+LQA+PYFDR
Sbjct: 20 NYTINFGPQHPAAHGVLRMVMELDGEIIERVDPHVGLLHRGTEKLIEYKTYLQALPYFDR 79
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
LDY +P+ EH+Y LA+EKLL +E+P R Q +R +++E+ RI +H+LN+ + MDVGA+T
Sbjct: 80 LDYCSPLGMEHSYVLAIEKLLDLEVPARAQYLRTMFAELTRICNHMLNIGSHVMDVGAMT 139
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD-SFPSALND 186
P LW FE RE + F+ERASG+RMH+AYFRPGGVHQD+P +L+ DIG W + P D
Sbjct: 140 PNLWVFELREDCLNFFERASGARMHSAYFRPGGVHQDVPEKLLVDIGEWVETRLPKLFGD 199
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
L+ NRIFKQRNV+I TV EDA WGFSG MIRGSG AWDLRKSQPY+ Y+ ++FD
Sbjct: 200 AMSLVIDNRIFKQRNVDIATVSKEDALAWGFSGPMIRGSGIAWDLRKSQPYDAYAAMEFD 259
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
IP+G GDCYDR++VR+ E+ +S KII+QC+ + GP+++ D K+VPPKR +MK+
Sbjct: 260 IPVGTRGDCYDRFMVRVEEVYQSAKIIKQCLRDM----PTGPIASLDRKVVPPKRGEMKQ 315
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
SMESLIHHFKLYTEG+HVP GEVY A E+PKGEFGVYL+SDG NKPYRCKIR ++HLQ
Sbjct: 316 SMESLIHHFKLYTEGFHVPAGEVYVATESPKGEFGVYLVSDGTNKPYRCKIRPTAFSHLQ 375
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AM+ + KGH LAD +AI+G++D+VFGE DR
Sbjct: 376 AMDMMSKGHMLADTTAIIGAIDVVFGECDR 405
>gi|164655213|ref|XP_001728737.1| hypothetical protein MGL_4072 [Malassezia globosa CBS 7966]
gi|159102621|gb|EDP41523.1| hypothetical protein MGL_4072 [Malassezia globosa CBS 7966]
Length = 462
Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats.
Identities = 230/390 (58%), Positives = 299/390 (76%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
R FT+NFGPQHPAAHGVLRLI+EL+GE + RVDPH+GLLHRGTEKLIE KT+ QA+PYFD
Sbjct: 77 RHFTVNFGPQHPAAHGVLRLIMELNGEEILRVDPHVGLLHRGTEKLIEYKTYTQALPYFD 136
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDY + M E +A AVEKLL IE+P R + IR LY E+ RI +H + V + MDVG L
Sbjct: 137 RLDYSSMMTNELCFARAVEKLLNIEVPERAKWIRTLYGELTRISNHCMAVLSHIMDVGGL 196
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP +WG EEREK+M FYER SG+RMHAAY RPGGV D+PP L++DI W F +++
Sbjct: 197 TPFVWGLEEREKIMEFYERVSGARMHAAYVRPGGVTYDLPPGLLDDIYHWATQFAGRVDE 256
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
I +L+TGNR++++R + IG V +DA +GFSGVM+RGSG WD+RK PY+ Y +++FD
Sbjct: 257 IEELVTGNRVWRERTIGIGKVSAKDALNYGFSGVMLRGSGIPWDIRKVAPYDAYDQVEFD 316
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+P+GK+GDC+DRYL R+ E R+S++II QC+N++ G + D KI PP R+ MK
Sbjct: 317 VPVGKNGDCFDRYLCRIEEFRQSLRIIHQCLNKMPA----GQIKVDDHKIAPPSRSMMKE 372
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
SMESLIHHFKL++EG+ VP GE Y+A+EAPKGE GVYL+S+G N+PYRC I APG+ HL
Sbjct: 373 SMESLIHHFKLFSEGFTVPPGETYSAIEAPKGEMGVYLVSNGTNRPYRCSISAPGFRHLA 432
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+F+ + H L D+ AI+G++D+VFGEVDR
Sbjct: 433 GADFVARHHYLPDMVAIIGTMDLVFGEVDR 462
>gi|118498238|ref|YP_899288.1| NADH dehydrogenase subunit D [Francisella tularensis subsp.
novicida U112]
gi|194324422|ref|ZP_03058195.1| NADH dehydrogenase i, d subunit [Francisella tularensis subsp.
novicida FTE]
gi|208780265|ref|ZP_03247607.1| NADH dehydrogenase i, d subunit [Francisella novicida FTG]
gi|254375046|ref|ZP_04990526.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Francisella novicida
GA99-3548]
gi|229891393|sp|A0Q8G9|NUOD_FRATN RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|118424144|gb|ABK90534.1| NADH dehydrogenase I, D subunit [Francisella novicida U112]
gi|151572764|gb|EDN38418.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Francisella novicida
GA99-3548]
gi|194321487|gb|EDX18972.1| NADH dehydrogenase i, d subunit [Francisella tularensis subsp.
novicida FTE]
gi|208743914|gb|EDZ90216.1| NADH dehydrogenase i, d subunit [Francisella novicida FTG]
gi|332678974|gb|AEE88103.1| NADH-ubiquinone oxidoreductase chain D [Francisella cf. novicida
Fx1]
Length = 417
Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats.
Identities = 232/415 (55%), Positives = 296/415 (71%), Gaps = 27/415 (6%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+++T+NFGP HPAAHGVLRLILELDGE V R DPH+GLLHRGTEKL E K + Q++ Y D
Sbjct: 5 KNYTLNFGPVHPAAHGVLRLILELDGENVVRADPHVGLLHRGTEKLAEFKPYNQSIGYMD 64
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYV+ M EHAY +A+EKLL +E+P R + IRV+++E+ RIL+HLL V +D+GA+
Sbjct: 65 RLDYVSMMCNEHAYVMAIEKLLQLEVPERAKYIRVMFAEMTRILNHLLWVAACGIDLGAM 124
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE------------------ 168
T L+ F RE L YE SG+RMHAAYFRPGGV +D+P +
Sbjct: 125 TVFLYAFRVREDLFDCYEAVSGARMHAAYFRPGGVARDLPTQMPQYQKTRFTSKRKAKKL 184
Query: 169 -------LVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVM 221
+++ + + F +L++I LLT NR++KQR V+IGTV E A GF+G M
Sbjct: 185 NEPRQGSMLDFLDHFVVDFEKSLDEIDTLLTDNRLWKQRTVDIGTVTAERAKELGFTGPM 244
Query: 222 IRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL 281
+RGSG AWDLRK+QPYE Y +L+FDIPIG +GDCYDRYLVRM EMRES K+I+QCV+ L
Sbjct: 245 LRGSGVAWDLRKTQPYEVYHKLEFDIPIGANGDCYDRYLVRMAEMRESNKLIKQCVDWL- 303
Query: 282 GKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFG 341
+ GPV + + K+ PPKR MK +ME LIHHFKL++EGY P GEVY E PKGEFG
Sbjct: 304 -RANPGPVLSDNHKVAPPKRNAMKNNMEELIHHFKLFSEGYCTPEGEVYVGTEHPKGEFG 362
Query: 342 VYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
VY+ SDG NKPYR K+RAPG+AH+ AM+ L GH LAD AI+ ++D+VFG+VDR
Sbjct: 363 VYIKSDGANKPYRLKMRAPGFAHISAMDELLSGHMLADTPAIISTIDVVFGDVDR 417
>gi|55980056|ref|YP_143353.1| NADH-quinone oxidoreductase subunit 4 [Thermus thermophilus HB8]
gi|2499314|sp|Q56220|NQO4_THET8 RecName: Full=NADH-quinone oxidoreductase subunit 4; AltName:
Full=NADH dehydrogenase I chain 4; AltName: Full=NDH-1
subunit 4
gi|90109657|pdb|2FUG|4 Chain 4, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
gi|90109665|pdb|2FUG|D Chain D, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
gi|90109673|pdb|2FUG|M Chain M, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
gi|90109681|pdb|2FUG|V Chain V, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
gi|258588591|pdb|3I9V|4 Chain 4, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
gi|258588599|pdb|3I9V|D Chain D, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
gi|258588607|pdb|3IAM|4 Chain 4, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
With Bound Nadh
gi|258588615|pdb|3IAM|D Chain D, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
With Bound Nadh
gi|258588623|pdb|3IAS|4 Chain 4, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
Re-Refined To 3.15 Angstrom Resolution
gi|258588631|pdb|3IAS|D Chain D, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
Re-Refined To 3.15 Angstrom Resolution
gi|258588639|pdb|3IAS|M Chain M, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
Re-Refined To 3.15 Angstrom Resolution
gi|258588647|pdb|3IAS|V Chain V, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
Re-Refined To 3.15 Angstrom Resolution
gi|296863607|pdb|3M9S|4 Chain 4, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
gi|296863620|pdb|3M9S|D Chain D, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
gi|1279864|gb|AAA97941.1| NADH dehydrogenase I, subunit NQO4 [Thermus thermophilus]
gi|55771469|dbj|BAD69910.1| NADH-quinone oxidoreductase chain 4 [Thermus thermophilus HB8]
Length = 409
Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats.
Identities = 180/394 (45%), Positives = 257/394 (65%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ T+N GPQHP+ HGVLRL++ L GE V V PHIG LH G EK +E +T+LQ +
Sbjct: 20 ELRTEVMTLNVGPQHPSTHGVLRLMVTLSGEEVLEVVPHIGYLHTGFEKTMEHRTYLQNI 79
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
Y R+DY+ + AYALAVEKLLG +P R + IRV+ +E+ R+ SHL+ + T +D
Sbjct: 80 TYTPRMDYLHSFAHDLAYALAVEKLLGAVVPPRAETIRVILNELSRLASHLVFLGTGLLD 139
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GALTP + F ERE ++ +E +G R H Y R GGV +D+P E V ++ + P
Sbjct: 140 LGALTPFFYAFRERETILDLFEWVTGQRFHHNYIRIGGVKEDLPEEFVPELKKLLEVLPH 199
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+++ L + IF +R +G + E A G +G +R SG +D+RK+ PY Y
Sbjct: 200 RIDEYEALFAESPIFYERARGVGVIPPEVAIDLGLTGGSLRASGVNYDVRKAYPYSGYET 259
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
FD+P+G+ GD +DR LVR+ EMRESVKII+Q + RL + GPV +P+I PP R
Sbjct: 260 YTFDVPLGERGDVFDRMLVRIREMRESVKIIKQALERL----EPGPVRDPNPQITPPPRH 315
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
++ SME++I+HFK YTEG+H P GEVY E+ +GE G Y++SDGG+ PYR K+RAP +
Sbjct: 316 LLETSMEAVIYHFKHYTEGFHPPKGEVYVPTESARGELGYYIVSDGGSMPYRVKVRAPSF 375
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ++ + CKG Q+ D+ AI+ SLD V G+VDR
Sbjct: 376 VNLQSLPYACKGEQVPDMVAIIASLDPVMGDVDR 409
>gi|297565711|ref|YP_003684683.1| NADH dehydrogenase I subunit D [Meiothermus silvanus DSM 9946]
gi|296850160|gb|ADH63175.1| NADH dehydrogenase I, D subunit [Meiothermus silvanus DSM 9946]
Length = 414
Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats.
Identities = 180/394 (45%), Positives = 260/394 (65%), Gaps = 1/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +S T+N GPQHP+ HGVLR+++ L GE V + PHIG LH G EK +E +T+LQ +
Sbjct: 22 ELRSEVMTLNVGPQHPSTHGVLRVVVTLSGEEVLELVPHIGYLHTGFEKNMENRTYLQNI 81
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
Y R+DY+ + AYALAVEKL+G E+P R Q IRVL +E+ RI SHL+ + T +D
Sbjct: 82 TYTPRMDYLHSFAHDLAYALAVEKLVGAEVPPRAQTIRVLLNELSRIASHLVFLGTGLLD 141
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
GALTP + F ERE ++ +E +G R H Y R GG+ +D+PPE + ++ + + P
Sbjct: 142 FGALTPFFYAFREREAVLDLFEWVTGQRFHHNYIRIGGLKEDLPPEFLGEVKKFLQAMPH 201
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+++ L + IF +R I + EDA G +G +R SG +D+RK+ PY Y
Sbjct: 202 RIDEYEQLFRESPIFYERAKGIAVIPPEDAINLGLTGGNLRASGVNYDVRKAYPYAGYET 261
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
FD+P+G++GD +DR ++R+ EMRESVKIIRQ V RL G GP+ +P+I P R+
Sbjct: 262 YTFDVPLGENGDIFDRMVIRIQEMRESVKIIRQAVERLEG-MGEGPIRDPNPQISLPPRS 320
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
++ SME++I+HFKL TEG+H +GEVY E+ +GE G Y+ISDGG+ PYR K+RAP +
Sbjct: 321 LLETSMEAVIYHFKLVTEGFHPALGEVYVPTESARGELGYYIISDGGSMPYRVKVRAPSF 380
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L+A+ + CKG Q+ D+ A++ SLD V G+VDR
Sbjct: 381 VNLRALPYACKGIQVPDMVAVIASLDPVMGDVDR 414
>gi|121998541|ref|YP_001003328.1| NADH dehydrogenase subunit D [Halorhodospira halophila SL1]
gi|229891395|sp|A1WXW4|NUOD_HALHL RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|121589946|gb|ABM62526.1| NADH dehydrogenase subunit D [Halorhodospira halophila SL1]
Length = 417
Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats.
Identities = 234/418 (55%), Positives = 296/418 (70%), Gaps = 27/418 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +S+T+NFGPQHPAAHGVLRL+LE++GE V R DPHIGLLHR TEKL E+K + Q++
Sbjct: 2 AEFQSYTLNFGPQHPAAHGVLRLVLEMEGEAVRRADPHIGLLHRATEKLAESKPYNQSIG 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EH Y A+EKLLGIE P+R Q IR + E+ RIL+HL+ + +DV
Sbjct: 62 YMDRLDYVSMMCNEHGYVRAIEKLLGIEPPLRAQYIRTMMDEVTRILNHLMWLGGHGLDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+T L+ F ERE LM YE SG+RMHA Y+RPGGVH+D+P ++
Sbjct: 122 GAMTAFLYTFREREDLMDVYEAVSGARMHATYYRPGGVHRDLPDQMPKYEPSAYRSDKEL 181
Query: 170 -----------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
++ + +C+ FP+ +++ LLT NRI+KQR V+I V E A GF+
Sbjct: 182 REMNRAREGSVLDFLDDFCERFPACVDEYETLLTENRIWKQRLVDICPVSAERAVELGFT 241
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
G ++RGSG AWDLRK QPY Y +DFDIP+G +GD YDRYLVR+ EMR+SV+II+QCV+
Sbjct: 242 GPLLRGSGVAWDLRKKQPYAAYDRVDFDIPVGVNGDSYDRYLVRVEEMRQSVRIIKQCVD 301
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L + GPV DPK+ PP R +MK MESLIHHFKL+TEGY P GEVYAAVEAPKG
Sbjct: 302 WL--RANPGPVRIDDPKVTPPTREEMKDDMESLIHHFKLFTEGYCTPPGEVYAAVEAPKG 359
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFGVYLISDG NKPYR K+R P Y HL A + + +G+ LADV ++GSLD+VFGEVDR
Sbjct: 360 EFGVYLISDGANKPYRLKVRPPCYYHLAATDEMIRGYMLADVVTLIGSLDVVFGEVDR 417
>gi|328771729|gb|EGF81768.1| hypothetical protein BATDEDRAFT_16021 [Batrachochytrium
dendrobatidis JAM81]
Length = 483
Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats.
Identities = 244/390 (62%), Positives = 302/390 (77%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
++T+NFGPQHPAAHGVLRL+LEL GE + R DPH+GLLHRGTEKLIE KT+LQA+PYFD
Sbjct: 98 NTYTVNFGPQHPAAHGVLRLLLELRGETIIRADPHVGLLHRGTEKLIEYKTYLQALPYFD 157
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYV+ M E AY+LAVEKLL I +P R + IR L+ EI RIL+H++ V T A+DVGAL
Sbjct: 158 RLDYVSMMCNEQAYSLAVEKLLNIHVPPRAKYIRTLFGEITRILNHIMAVATHALDVGAL 217
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP LW FEEREKLM FYER SG+RMHAAY RPGGV D+P L+EDI W + S +++
Sbjct: 218 TPFLWLFEEREKLMEFYERVSGARMHAAYIRPGGVSLDLPIGLMEDIHKWALQYSSRIDE 277
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ + L+ +RI+K R +G V ++A G+ FSGVM+RGSG WDLRK QPY+ Y E+DFD
Sbjct: 278 LEEALSNSRIWKNRLREVGVVTAQEALGFSFSGVMLRGSGVEWDLRKEQPYDAYDEVDFD 337
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
I +G +GDCYDRYL R+ EMR+S++II QC+ ++ GPV D KIVPP RA MK
Sbjct: 338 IAVGTNGDCYDRYLCRVEEMRQSLRIIDQCIKQMPA----GPVKVDDNKIVPPSRASMKE 393
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
SME+LIHHFKLY+EGY VP GE Y +EAPKGEFGV+L+SDG ++PYRC IRAPG+ HL
Sbjct: 394 SMEALIHHFKLYSEGYSVPAGETYTVIEAPKGEFGVFLVSDGTSRPYRCHIRAPGFPHLA 453
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A++F+ KGH LAD I+G+ DIVFGEVDR
Sbjct: 454 AVDFMSKGHLLADAVTIIGTCDIVFGEVDR 483
>gi|193215669|ref|YP_001996868.1| NADH dehydrogenase I subunit D [Chloroherpeton thalassium ATCC
35110]
gi|229891260|sp|B3QUS0|NUOD1_CHLT3 RecName: Full=NADH-quinone oxidoreductase subunit D 1; AltName:
Full=NADH dehydrogenase I subunit D 1; AltName:
Full=NDH-1 subunit D 1
gi|193089146|gb|ACF14421.1| NADH dehydrogenase I, D subunit [Chloroherpeton thalassium ATCC
35110]
Length = 440
Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats.
Identities = 176/394 (44%), Positives = 241/394 (61%), Gaps = 4/394 (1%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
D ++ +N GPQHPA HGVLR++L+LDGE V P +G LHR EKL E K++ +
Sbjct: 50 DDPLEQTMVLNMGPQHPATHGVLRVVLKLDGERVVHAVPELGYLHRAMEKLAENKSYHEF 109
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+PY DRLDY++P + A LAVEKL IE+P R IR + E+ RI SHLL++ M
Sbjct: 110 MPYTDRLDYMSPYSNNTALCLAVEKLAEIEVPERATYIRTIACELARISSHLLSIGALVM 169
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D GAL+ LW F+EREK+ ++ +G+R ++ R GG+ D+ E E I W F
Sbjct: 170 DTGALSVFLWTFQEREKIYDIFDLLTGARFTISHCRVGGIASDLSKECAELIIRWLKQFK 229
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+ + LL NRIF +R +G + EDA G SG +R SG +D+R+ +PY Y+
Sbjct: 230 PKIQEWRKLLDRNRIFIERLEGVGVISKEDAIAIGLSGPNLRASGVHYDIRRDEPYLAYN 289
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+LDF+IP ++GD Y RY +RM+EM ESVKII Q + +L G V D K P +
Sbjct: 290 DLDFEIPTFENGDSYARYQMRMLEMEESVKIIEQALRKL----PKGEVRNEDAKKTFPWK 345
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
++ SMESLIH F + G +P GE+Y A+EAPKGE G Y+ S G P+R KIR+P
Sbjct: 346 DEIYHSMESLIHDFMMTDSGIQMPKGEIYHAIEAPKGELGFYIQSRGEGVPWRLKIRSPS 405
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ +LQA+ L +G +ADV I+GSLD V GE D
Sbjct: 406 FCNLQALPKLVEGGMIADVVIIIGSLDPVMGEAD 439
>gi|103486794|ref|YP_616355.1| NADH dehydrogenase subunit D [Sphingopyxis alaskensis RB2256]
gi|98976871|gb|ABF53022.1| NADH dehydrogenase I, D subunit [Sphingopyxis alaskensis RB2256]
Length = 418
Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats.
Identities = 250/390 (64%), Positives = 316/390 (81%), Gaps = 5/390 (1%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
++TINFGPQHPAAHGVLR+++ELDGEI+ERVDPH+GLLHRGTEKLIE KT+LQA+PYFDR
Sbjct: 33 NYTINFGPQHPAAHGVLRMVMELDGEIIERVDPHVGLLHRGTEKLIEYKTYLQALPYFDR 92
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
LDY +P+ EH+Y LA+EKLL +E+P R Q +R +++E+ RI +H+LN+ + MDVGA+T
Sbjct: 93 LDYCSPLGMEHSYVLAIEKLLDLEVPARAQYLRTMFAELTRICNHMLNIGSHVMDVGAMT 152
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD-SFPSALND 186
P LW FE RE + F+ERASG+RMH+AYFRPGGVHQD+P +L+ DIG W + P D
Sbjct: 153 PNLWVFELREDCLNFFERASGARMHSAYFRPGGVHQDVPEKLLVDIGEWVETRLPKLFGD 212
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
L+ NRIFKQRNV+I TV EDA WGFSG MIRGSG AWDLRKSQPY+ Y+ ++FD
Sbjct: 213 AMSLVIDNRIFKQRNVDIATVSKEDALAWGFSGPMIRGSGIAWDLRKSQPYDAYAAMEFD 272
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
IP+G GDCYDR++VR+ E+ +S KII+QC+ + GP+++ D K+VPPKR +MK+
Sbjct: 273 IPVGTRGDCYDRFMVRVEEVYQSAKIIKQCLRDM----PTGPIASLDRKVVPPKRGEMKQ 328
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
SMESLIHHFKLYTEG+HVP GEVY A E+PKGEFGVYL+SDG NKPYRCKIR ++HLQ
Sbjct: 329 SMESLIHHFKLYTEGFHVPAGEVYVATESPKGEFGVYLVSDGTNKPYRCKIRPTAFSHLQ 388
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AM+ + KGH LAD +AI+G++D+VFGE DR
Sbjct: 389 AMDMMSKGHMLADTTAIIGAIDVVFGECDR 418
>gi|195354912|ref|XP_002043940.1| GM17844 [Drosophila sechellia]
gi|194129178|gb|EDW51221.1| GM17844 [Drosophila sechellia]
Length = 502
Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats.
Identities = 223/390 (57%), Positives = 284/390 (72%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
R+ INFGP HPAAHGVLR+ILELD E V DPHIGLLHRGTEKLIE KT+ QA+PYFD
Sbjct: 117 RTKLINFGPAHPAAHGVLRMILELDNETVLNADPHIGLLHRGTEKLIEYKTYTQALPYFD 176
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYV+ M E AY LAVEKLL +E+P R + IR ++SEI R+ +H + + + +D GA+
Sbjct: 177 RLDYVSCMANELAYCLAVEKLLNVEVPRRAKYIRTMFSEIMRLTNHTMAIGSSVLDCGAI 236
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP W FEEREKL F ERASG+R+HAAY RPGGV DIP + D+ + + F L++
Sbjct: 237 TPLFWLFEEREKLYEFSERASGARLHAAYIRPGGVASDIPLGFLHDLYQFINLFNERLDE 296
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ D++T NRI++ RN+ IG + DA +G +G ++R +G WDLRK QPY+ Y E+DFD
Sbjct: 297 VEDVVTDNRIWRMRNIGIGVISAHDALNYGCTGPVLRATGVKWDLRKQQPYDAYDEIDFD 356
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ +G +GDCYDRYLVRM EMRESV II+QC++ + G + D KI PP+R+ MK
Sbjct: 357 VVVGSNGDCYDRYLVRMREMRESVNIIKQCIDSM----PPGEIKVDDLKICPPQRSKMKE 412
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
ME LIHHFK +++G+ VP G+ Y AVE+PKGEFG +LISDG ++PYRCKIR YAHL
Sbjct: 413 GMEDLIHHFKHFSQGFRVPPGQTYCAVESPKGEFGAFLISDGSSRPYRCKIRPASYAHLA 472
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
M + H LADV AI+GSLDIVFGE+DR
Sbjct: 473 LMAKMAPAHLLADVVAIIGSLDIVFGEIDR 502
>gi|200004026|ref|YP_002221361.1| NADH dehydrogenase subunit 7 [Blastocystis sp. DMP/02-328]
gi|198385450|gb|ACH86044.1| NADH dehydrogenase subunit 7 [Blastocystis sp. DMP/02-328]
Length = 393
Score = 425 bits (1094), Expect = e-117, Method: Composition-based stats.
Identities = 221/396 (55%), Positives = 308/396 (77%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ +++ +SFT+NFGPQHPA HGVLRLI+EL GEIV+ DPHIG LHRGTEKLIE KT+LQ
Sbjct: 2 LKRRQLKSFTLNFGPQHPATHGVLRLIVELRGEIVQNADPHIGFLHRGTEKLIENKTYLQ 61
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDY++ + EH Y LAVEKLL +P+R Q IRV+++EI RIL+HL+ + + A
Sbjct: 62 ALPYFDRLDYISMIENEHCYVLAVEKLLKCNVPLRAQYIRVIFAEITRILNHLIGLGSHA 121
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+D+G+ T +W FEEREKL+ FYER +G+RMHA YFRPGGV QDIP + D+ +C F
Sbjct: 122 LDIGSTTVIIWLFEEREKLLEFYERVTGARMHANYFRPGGVRQDIPVGFLNDLYIFCTEF 181
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
LND+ +LLT NRI+++R V+IG + +DA +GV++R +G WDLRK+ PY+ Y
Sbjct: 182 NERLNDMEELLTNNRIWRERLVDIGVITKQDALDLNLTGVLLRSTGVKWDLRKTFPYDAY 241
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
S++DFDIP+G +GDC+DRY++R+ EMR+SV+II QC+N++ GP+ + KI P
Sbjct: 242 SKVDFDIPVGTNGDCFDRYIIRIEEMRQSVRIINQCINQISE----GPIKTDNYKISIPS 297
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ +K+SMESLI HFK+++EG+ V EVY ++EAPKGEFG+YL+SDG NKPYRC +++
Sbjct: 298 KIQIKQSMESLIDHFKIFSEGFKVDANEVYCSIEAPKGEFGIYLVSDGSNKPYRCHLKSS 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ HLQ++++L +GH +ADV+ ++GSLDIVFG++DR
Sbjct: 358 GFIHLQSVDYLTRGHLIADVTTVIGSLDIVFGDIDR 393
>gi|196228488|ref|ZP_03127355.1| NADH dehydrogenase I, D subunit [Chthoniobacter flavus Ellin428]
gi|196227891|gb|EDY22394.1| NADH dehydrogenase I, D subunit [Chthoniobacter flavus Ellin428]
Length = 420
Score = 425 bits (1094), Expect = e-117, Method: Composition-based stats.
Identities = 189/391 (48%), Positives = 250/391 (63%), Gaps = 4/391 (1%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+N GP HPA HGVLRLILE+DGEI+ P IG LHRG EK+ E + Q +PY
Sbjct: 34 GEKLILNMGPSHPATHGVLRLILEMDGEIITMATPDIGYLHRGDEKIAENMHYNQFIPYT 93
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DRLDY+AP+ AYALAVEKL+G +P RGQ IRV+ E+ RI SHLL V AMD GA
Sbjct: 94 DRLDYLAPIANNVAYALAVEKLMGWTLPPRGQAIRVICCELARISSHLLGVGCFAMDCGA 153
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+T L+ F EREK+ E +G+R +Y R GG +D+P ++ + + P+ ++
Sbjct: 154 MTVFLYTFTEREKIYNLVELLTGARFTTSYTRVGGQTRDLPDGFLDQVKKFLSELPAVID 213
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ +LL+ NRIF R +IGT+ EDA +G SG +RGSG DLRK PY Y + +F
Sbjct: 214 ETDNLLSRNRIFVDRTKDIGTISKEDALSFGLSGPNLRGSGIDHDLRKKHPYLGYEQYEF 273
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
D+PIG GD YDRY+VRM EMR+S++I+ Q +++L G GP++ SD K PP + +
Sbjct: 274 DVPIGSVGDSYDRYVVRMEEMRQSIRILHQVIDKLPG----GPINVSDAKNFPPPKTAVL 329
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
ME LIHHF ++TEG P GE+Y E PKGE G Y+ S GG P+R KIR+P + +L
Sbjct: 330 TKMEELIHHFIVHTEGVDAPPGEIYFGHENPKGELGFYINSKGGGTPHRLKIRSPSFCNL 389
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + GH ++DV AILGSLD V GE DR
Sbjct: 390 SILSKILPGHMMSDVVAILGSLDFVMGECDR 420
>gi|194743140|ref|XP_001954058.1| GF16933 [Drosophila ananassae]
gi|190627095|gb|EDV42619.1| GF16933 [Drosophila ananassae]
Length = 519
Score = 425 bits (1094), Expect = e-117, Method: Composition-based stats.
Identities = 229/390 (58%), Positives = 285/390 (73%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
R+ INFGP HPAAHGVLR+ILELD E V DPHIGLLHRGTEKLIE KT++QA+PYFD
Sbjct: 134 RTKFINFGPAHPAAHGVLRMILELDNETVLAADPHIGLLHRGTEKLIEYKTYVQALPYFD 193
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYV+ M E AYALAVEKLL IE+P R + IR L++EI R+ +H + V++ +D G +
Sbjct: 194 RLDYVSCMANEQAYALAVEKLLNIEVPRRARYIRTLFAEIMRLTNHTMAVSSSILDCGGI 253
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP W FEEREKL F ERASG+R+HAAYFRPGGV DIP +D+ + F L++
Sbjct: 254 TPLFWLFEEREKLYEFSERASGARLHAAYFRPGGVASDIPLGFSDDLYAFIKQFSDRLDE 313
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ DL+T NRI++ RN+ IG + DA WG +G ++R G WDLRK QPY+ Y E+DF+
Sbjct: 314 VEDLVTDNRIWRMRNIGIGQISAHDALNWGCTGPVLRACGIKWDLRKQQPYDAYDEMDFE 373
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ +G +GDCYDRYLVRM EMRES+ II QC++++ G + D KI PP+R DMK
Sbjct: 374 VMVGSNGDCYDRYLVRMREMRESLNIIYQCLDKM----PEGEIKVDDRKICPPQRRDMKV 429
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
ME LIHHFK +++G VP G+ Y AVE+PKGEFGVYLISDG ++PYRCKIR YAHL
Sbjct: 430 GMEDLIHHFKHFSQGIVVPPGQTYTAVESPKGEFGVYLISDGTSRPYRCKIRPASYAHLA 489
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
M + H LADV AI+GSLDIVFGE+DR
Sbjct: 490 VMAKMAPSHFLADVVAIIGSLDIVFGEIDR 519
>gi|94985019|ref|YP_604383.1| NADH dehydrogenase I, D subunit [Deinococcus geothermalis DSM
11300]
gi|218534403|sp|Q1IZX0|NUOD_DEIGD RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|94555300|gb|ABF45214.1| NADH dehydrogenase subunit D [Deinococcus geothermalis DSM 11300]
Length = 403
Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats.
Identities = 176/392 (44%), Positives = 247/392 (63%), Gaps = 4/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ ++N GPQHP+ HGVLRL++++DGE V RV PH+G LH G EK E +T+ Q V Y
Sbjct: 16 HTEIMSLNVGPQHPSTHGVLRLVVDMDGEYVTRVTPHMGYLHTGFEKTFEHRTYHQGVTY 75
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
R DY+ E AY L+VEKLLG E+P R +RV+ E+GRI SHL+ V T +D+G
Sbjct: 76 APRTDYLHCFGHELAYVLSVEKLLGAEVPERATTVRVMLHELGRIHSHLVFVGTGLLDLG 135
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
ALTP + F E+E + +E G RM+ YFR GG+ +DIP + + + D+F +
Sbjct: 136 ALTPFFYAFREKEAVQDLFEAVCGYRMNQGYFRVGGLARDIPEDWPARVAAFLDTFERGV 195
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
++ L N IF R +G + + A G +G +R SG D RK+ PY Y D
Sbjct: 196 DEYETLFAKNPIFLDRAKGVGVIPRDVAIDLGLTGPNLRASGVPLDHRKANPYCGYETYD 255
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F++P+ + GD R+ +R++E+RES KIIRQ + RL GP+ + KI P R+++
Sbjct: 256 FEVPVSQAGDSLARFQLRLLELRESAKIIRQALKRLT----PGPIKDPNRKISLPPRSEL 311
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
+ SME++IHHFKL TEG+H P GEVY E+ +GE G Y++SDGG+ PYR KIRAP + +
Sbjct: 312 ETSMEAVIHHFKLVTEGFHPPKGEVYVPTESARGEVGYYIVSDGGSMPYRVKIRAPSFVN 371
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
LQA+E+ C G Q AD+ IL S+D V G+VDR
Sbjct: 372 LQALEYACVGGQFADLITILASIDPVLGDVDR 403
>gi|56707214|ref|YP_169110.1| NADH dehydrogenase subunit D [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110669684|ref|YP_666241.1| NADH dehydrogenase subunit D [Francisella tularensis subsp.
tularensis FSC198]
gi|81598106|sp|Q5NIN2|NUOD_FRATT RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|123359658|sp|Q14K35|NUOD_FRAT1 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|56603706|emb|CAG44667.1| NADH dehydrogenase I, D subunit [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110320017|emb|CAL08050.1| NADH dehydrogenase I, D subunit [Francisella tularensis subsp.
tularensis FSC198]
gi|282158322|gb|ADA77713.1| NADH dehydrogenase subunit D [Francisella tularensis subsp.
tularensis NE061598]
Length = 417
Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats.
Identities = 231/415 (55%), Positives = 295/415 (71%), Gaps = 27/415 (6%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+++T+NFGP HPAAHGVLRLILELDGE V R DPH+GLLHRGTEKL E K + Q++ Y D
Sbjct: 5 KNYTLNFGPVHPAAHGVLRLILELDGENVVRADPHVGLLHRGTEKLAEFKPYNQSIGYMD 64
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYV+ M EHAY +A+EKLL +E+P R + IRV+++E+ RIL+HLL V +D+GA+
Sbjct: 65 RLDYVSMMCNEHAYVMAIEKLLQLEVPERAKYIRVMFAEMTRILNHLLWVAACGIDLGAM 124
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE------------------ 168
T L+ F RE L YE SG+RMHAAYFRPGGV +D+P +
Sbjct: 125 TVFLYAFRVREDLFDCYEAVSGARMHAAYFRPGGVARDLPTQMPQYQKTRFTSKRKAKKL 184
Query: 169 -------LVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVM 221
+++ + + F +L++I LLT NR++KQR V+IGTV E A GF+G M
Sbjct: 185 NEPRQGSMLDFLDHFVVDFEKSLDEIDTLLTDNRLWKQRTVDIGTVTAERAKELGFTGPM 244
Query: 222 IRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL 281
+RGSG AWDLRK+QPYE Y +L+FDIPIG +GDCYDRYLVRM EMRES K+I+QCV+ L
Sbjct: 245 LRGSGVAWDLRKTQPYEVYHKLEFDIPIGANGDCYDRYLVRMAEMRESNKLIKQCVDWL- 303
Query: 282 GKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFG 341
+ GPV + + K+ PPKR MK +ME LIHHFKL++EGY GEVY E PKGEFG
Sbjct: 304 -RANPGPVLSDNNKVAPPKRNAMKNNMEELIHHFKLFSEGYCTTEGEVYVGTEHPKGEFG 362
Query: 342 VYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
VY+ SDG NKPYR K+RAPG+AH+ AM+ L GH LAD AI+ ++D+VFG+VDR
Sbjct: 363 VYIKSDGANKPYRLKMRAPGFAHISAMDELLSGHMLADTPAIISTIDVVFGDVDR 417
>gi|260898743|ref|NP_001159631.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial isoform 2 precursor [Homo sapiens]
Length = 457
Score = 425 bits (1092), Expect = e-117, Method: Composition-based stats.
Identities = 237/380 (62%), Positives = 302/380 (79%), Gaps = 4/380 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
++ T+NFGPQHPAAHGVLRL++EL GE+V + DPHIGLLHRGTEKLIE KT+LQA+PYFD
Sbjct: 78 KNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFD 137
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYV+ M E AY+LAVEKLL I P R Q IRVL+ EI R+L+H++ VTT A+D+GA+
Sbjct: 138 RLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGAM 197
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP W FEEREK+ FYER SG+RMHAAY RPGGVHQD+P L++DI + +F L++
Sbjct: 198 TPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDE 257
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ +LLT NRI++ R ++IG V E+A +GFSGVM+RGSG WDLRK+QPY+ Y +++FD
Sbjct: 258 LEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFD 317
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+P+G GDCYDRYL R+ EMR+S++II QC+N++ G + D K+ PPKRA+MK
Sbjct: 318 VPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKM----PPGEIKVDDAKVSPPKRAEMKT 373
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
SMESLIHHFKLYTEGY VP G Y A+EAPKGEFGVYL+SDG ++PYRCKI+APG+AHL
Sbjct: 374 SMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLA 433
Query: 367 AMEFLCKGHQLADVSAILGS 386
++ + KGH LADV AI+G+
Sbjct: 434 GLDKMSKGHMLADVVAIIGT 453
>gi|85374162|ref|YP_458224.1| NADH dehydrogenase subunit D [Erythrobacter litoralis HTCC2594]
gi|122544413|sp|Q2NA64|NUOD_ERYLH RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|84787245|gb|ABC63427.1| NADH-quinone oxidoreductase chain D [Erythrobacter litoralis
HTCC2594]
Length = 403
Score = 425 bits (1092), Expect = e-117, Method: Composition-based stats.
Identities = 246/392 (62%), Positives = 308/392 (78%), Gaps = 5/392 (1%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
++TINFGPQHPAAHGVLR+I+ELDGEI+ERVDPH+GLLHRGTEKLIE KT+LQA+PYF
Sbjct: 16 ITNYTINFGPQHPAAHGVLRMIMELDGEIIERVDPHVGLLHRGTEKLIEHKTYLQALPYF 75
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DRLDY +P+ EH+Y LA+EKLL IE+P R Q +RVL++E+ RI +H+LN+ +DVGA
Sbjct: 76 DRLDYCSPLCMEHSYVLAIEKLLNIEVPERAQYLRVLFAELTRISNHMLNLGAHVLDVGA 135
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD-SFPSAL 184
TP LW FE RE M F+ERASG+RMH A+FRPGGVHQD+P +L+ DIG W D P
Sbjct: 136 FTPNLWMFELREDCMNFFERASGARMHMAWFRPGGVHQDVPEKLLVDIGEWLDTRLPELF 195
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
D L+ NRIFKQRNV+I V +DA WGFSG MIR +G WDLRKSQPY+ Y ++
Sbjct: 196 GDAMSLVLDNRIFKQRNVDIAVVSKDDAVKWGFSGPMIRAAGIPWDLRKSQPYDVYDRME 255
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDIP+G + DCYDR+ VR+ E+ ES KII+QC+ ++ GP++++D K+ PP R M
Sbjct: 256 FDIPVGTNSDCYDRFSVRVKEVYESAKIIKQCLAQM----PQGPIASTDGKVSPPSRGRM 311
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K+SME+LIHHFKLYTEG+HVP GEVY A E+PKGEFGVYL++DG NKPYRCKIR ++H
Sbjct: 312 KQSMEALIHHFKLYTEGFHVPAGEVYVATESPKGEFGVYLVADGTNKPYRCKIRPTAFSH 371
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
LQAM+F+ KGH L D +AILG++D+VFGE DR
Sbjct: 372 LQAMDFMSKGHMLPDATAILGAIDVVFGECDR 403
>gi|302559104|ref|ZP_07311446.1| NADH dehydrogenase (quinone), D subunit [Streptomyces griseoflavus
Tu4000]
gi|302476722|gb|EFL39815.1| NADH dehydrogenase (quinone), D subunit [Streptomyces griseoflavus
Tu4000]
Length = 440
Score = 424 bits (1091), Expect = e-117, Method: Composition-based stats.
Identities = 183/412 (44%), Positives = 251/412 (60%), Gaps = 22/412 (5%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GPQHP+ HGVLRLILE+DGE V IG LH G EK +E +T+ Q
Sbjct: 33 RADDERIVVNMGPQHPSTHGVLRLILEIDGETVTEARCGIGYLHTGIEKNLEYRTWTQGT 92
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R+DY+ P E AY LAVEKLLGIE +P R +IRVL E+ R+ SHL+ + T
Sbjct: 93 TFVTRMDYLTPFFNETAYCLAVEKLLGIEDQVPDRASVIRVLLMELNRLSSHLVCIATGG 152
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
M++GA T ++GF +RE ++ YE +G RM+ AY RPGG+ QD+PP V+ I +
Sbjct: 153 MELGATTIMIYGFRDRELILDIYELITGLRMNHAYIRPGGLAQDLPPGAVDQIREFVKKM 212
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ + L TGN IFK R ++G + L G +G ++R +G DLRK+QPY Y
Sbjct: 213 RKNIGEYDKLATGNPIFKARMQDVGYLDLAGCMALGATGPILRSTGLPHDLRKTQPYCGY 272
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
DF++P D Y R+L+R+ EMR+S++I+ QC++RL + GPV +D KI P
Sbjct: 273 ETYDFEVPTADTCDSYGRFLIRLEEMRQSLRIVEQCLDRL----QPGPVMVADKKIAWPA 328
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
+ M SME+LIHHFKL TEG+ VP G+ YAAVE+PKGE GV++
Sbjct: 329 QLALGPDGLGNSLDHIKNIMGTSMEALIHHFKLVTEGFRVPPGQAYAAVESPKGELGVHV 388
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +PYR R P + +LQAM +C+G Q+ADV + S+D V G VDR
Sbjct: 389 VSDGGTRPYRVHFRDPSFTNLQAMAAMCEGGQVADVIVAVASIDPVMGGVDR 440
>gi|134301249|ref|YP_001121217.1| NADH dehydrogenase subunit D [Francisella tularensis subsp.
tularensis WY96-3418]
gi|187930991|ref|YP_001890975.1| NADH dehydrogenase subunit D [Francisella tularensis subsp.
mediasiatica FSC147]
gi|254368968|ref|ZP_04984981.1| NADH dehydrogenase [Francisella tularensis subsp. holarctica
FSC022]
gi|254371430|ref|ZP_04987431.1| NADH dehydrogenase [Francisella tularensis subsp. tularensis
FSC033]
gi|229891392|sp|B2SEV2|NUOD_FRATM RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|229891394|sp|A4IVZ5|NUOD_FRATW RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|134049026|gb|ABO46097.1| NADH dehydrogenase I subunit D [Francisella tularensis subsp.
tularensis WY96-3418]
gi|151569669|gb|EDN35323.1| NADH dehydrogenase [Francisella tularensis subsp. tularensis
FSC033]
gi|157121889|gb|EDO66059.1| NADH dehydrogenase [Francisella tularensis subsp. holarctica
FSC022]
gi|187711900|gb|ACD30197.1| NADH dehydrogenase I, D subunit [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 417
Score = 424 bits (1091), Expect = e-117, Method: Composition-based stats.
Identities = 231/415 (55%), Positives = 295/415 (71%), Gaps = 27/415 (6%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+++T+NFGP HPAAHGVLRLILELDGE V R DPH+GLLHRGTEKL E K + Q++ Y D
Sbjct: 5 KNYTLNFGPVHPAAHGVLRLILELDGENVVRADPHVGLLHRGTEKLAEFKPYNQSIGYMD 64
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYV+ M EHAY +A+EKLL +E+P R + IRV+++E+ RIL+HLL V +D+GA+
Sbjct: 65 RLDYVSMMCNEHAYVMAIEKLLQLEVPERAKYIRVMFAEMTRILNHLLWVAACGIDLGAM 124
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE------------------ 168
T L+ F RE L YE SG+RMHAAYFRPGGV +D+P +
Sbjct: 125 TVFLYAFRVREDLFDCYEAVSGARMHAAYFRPGGVARDLPTQMPQYQKTRFTSKRKAKKL 184
Query: 169 -------LVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVM 221
+++ + + F +L++I LLT NR++KQR V+IGTV E A GF+G M
Sbjct: 185 NEPRQGSMLDFLDHFVVDFEKSLDEIDTLLTDNRLWKQRTVDIGTVTAERAKELGFTGPM 244
Query: 222 IRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL 281
+RGSG AWDLRK+QPYE Y +L+FDIPIG +GDCYDRYLVRM EMRES K+I+QCV+ L
Sbjct: 245 LRGSGVAWDLRKTQPYEVYHKLEFDIPIGANGDCYDRYLVRMAEMRESNKLIKQCVDWL- 303
Query: 282 GKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFG 341
+ GPV + + K+ PPKR MK +ME LIHHFKL++EGY GEVY E PKGEFG
Sbjct: 304 -RANPGPVLSDNHKVAPPKRNAMKNNMEELIHHFKLFSEGYCTTEGEVYVGTEHPKGEFG 362
Query: 342 VYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
VY+ SDG NKPYR K+RAPG+AH+ AM+ L GH LAD AI+ ++D+VFG+VDR
Sbjct: 363 VYIKSDGANKPYRLKMRAPGFAHISAMDELLSGHMLADTPAIISTIDVVFGDVDR 417
>gi|156541952|ref|XP_001600518.1| PREDICTED: similar to CG1970-PA [Nasonia vitripennis]
Length = 478
Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats.
Identities = 222/393 (56%), Positives = 295/393 (75%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K+ ++ +NFGPQHP+AHG LRL+LELDGE V DPHIGLLHRG+EKL+E KT+ QA+P
Sbjct: 90 KRIKNVRVNFGPQHPSAHGCLRLVLELDGEYVVSADPHIGLLHRGSEKLMEYKTYTQALP 149
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDR DYV+ ++ E +ALAVEKLL I+IP+R + IR ++ E+ R+++H++++ +D
Sbjct: 150 YFDRFDYVSVLSNEQCFALAVEKLLNIDIPLRAKYIRTMFVELSRLMNHMMSIACHCLDT 209
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GAL+P W FEEREK+ F+ERASG+RMHA Y RPGGV D+P L++DI + F
Sbjct: 210 GALSPFFWVFEEREKIYEFHERASGARMHACYVRPGGVAVDLPLGLLDDIHDFVAKFSER 269
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
++++ DLLT NRI+KQR V IG + E+A +G SG+MIR G WDLRKS PY+ Y +
Sbjct: 270 MDEVEDLLTENRIWKQRTVGIGVLSAEEALNYGCSGMMIRACGIKWDLRKSMPYDAYDCV 329
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DFD+P+ +GD YDRYLVRM EMR+S++II QC+N++ G V D KI PP RA+
Sbjct: 330 DFDVPVAWNGDTYDRYLVRMHEMRQSLRIIEQCLNQMPA----GEVRVDDFKISPPPRAE 385
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK SME+LIHHFKL++EGYHVP G Y AVEAPKGEFGVYL+SDG ++PYR ++RAPG+
Sbjct: 386 MKLSMEALIHHFKLFSEGYHVPPGATYTAVEAPKGEFGVYLVSDGSSRPYRLRVRAPGFP 445
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HL ++ L G LADV ++L +L+IVFG+VDR
Sbjct: 446 HLALLKKLAPGLMLADVVSVLSTLEIVFGDVDR 478
>gi|301353220|ref|YP_003795217.1| NADH dehydrogenase subunit 7 [Proteromonas lacertae]
gi|290573168|gb|ADD46355.1| NADH dehydrogenase subunit 7 [Proteromonas lacertae]
Length = 392
Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats.
Identities = 225/392 (57%), Positives = 298/392 (76%), Gaps = 4/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+SFT+NFGPQHPA HGVLRLIL+L GE+V + DPHIG LHRGTEKLIE KT+LQA+P+
Sbjct: 5 NIKSFTLNFGPQHPATHGVLRLILKLQGEVVFQADPHIGFLHRGTEKLIEHKTYLQALPH 64
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
FDRLDY+A M EH Y+LAVE LL +IP+R + IRV++SE+ R+L+HL+ V + A+D+G
Sbjct: 65 FDRLDYIAMMCNEHCYSLAVETLLHTDIPLRAKYIRVIFSELTRLLNHLIAVGSAALDLG 124
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A+T LW FEEREK++ FYER SG+RMHA + RPGGV +D+P L+EDI C P L
Sbjct: 125 AMTVMLWLFEEREKILEFYERVSGARMHANFIRPGGVREDLPLGLLEDIYDLCLRLPHRL 184
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
++ +LLT NRI++ R V++G V +A GFSGVM+R +G WDLRK+ PYE Y +++
Sbjct: 185 DEAEELLTNNRIWRNRLVDVGVVTKNEALKNGFSGVMLRSTGLLWDLRKNFPYEVYDKIN 244
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F +P+G +GDCYDRY++RM EMR+S+ II QC+ + GP+ ++ KI P R+ M
Sbjct: 245 FSVPVGTNGDCYDRYIMRMEEMRQSISIILQCLQNI----PEGPIKIANNKIAIPLRSSM 300
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K SME+LI HFK+++EG++VP GE + +EAPKGE GVYL+S G NKPYRC ++APGY H
Sbjct: 301 KNSMEALIDHFKIFSEGFYVPAGETFTCIEAPKGELGVYLVSIGENKPYRCHVKAPGYTH 360
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
LQ +E L KGH LAD+ AI+G+ DIVFGE+DR
Sbjct: 361 LQGVELLSKGHFLADIVAIIGAFDIVFGEIDR 392
>gi|257054395|ref|YP_003132227.1| NADH dehydrogenase subunit D [Saccharomonospora viridis DSM 43017]
gi|256584267|gb|ACU95400.1| NADH dehydrogenase subunit D [Saccharomonospora viridis DSM 43017]
Length = 460
Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats.
Identities = 180/411 (43%), Positives = 252/411 (61%), Gaps = 20/411 (4%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
D KS IN GPQHP+ HGVLRL+LE++GE V ++ IG LH G EK E +T+ QA
Sbjct: 54 DATKSERMIINMGPQHPSTHGVLRLVLEMEGETVTQLRSVIGYLHTGIEKNCEYRTWTQA 113
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
V + R+DY++P+ E Y LAVEKLLGIE+P R QL+R+L E+ R+ SH + + T M
Sbjct: 114 VTFVTRMDYLSPLFNEMGYCLAVEKLLGIEVPRRAQLLRILLMELNRLGSHFVYIATGGM 173
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
++G+ T GF ERE+++ E +G RM+ A+ RPGG+ QD+P + E + +C
Sbjct: 174 ELGSTTAMTIGFREREEVLHLLEHLTGLRMNHAFIRPGGLAQDMPEDFEEKVTEFCKVMD 233
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
L L TG I++ R +G + L+ G +G ++R +G AWDLRK PY Y
Sbjct: 234 KRLPLYDKLFTGQPIWRNRLKGVGFLPLDACLALGVTGPVLRSAGLAWDLRKVDPYSGYD 293
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK- 300
E+DF++P DC+ RYL+R+ EM +S++IIRQ + L + GPV D KI P
Sbjct: 294 EIDFEVPTSTDADCWARYLLRVEEMHQSLRIIRQVLKML----EPGPVMVEDRKIAWPAQ 349
Query: 301 ---------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLI 345
R M +SMESLIHHFKL TEG+ VP G+VY+AVE+P+GE G +L+
Sbjct: 350 LSISSDGMGNSLEHVRKIMGQSMESLIHHFKLVTEGFRVPPGQVYSAVESPRGELGFHLV 409
Query: 346 SDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
SDGG +P R +R P + +LQ+M + +G +ADV A + S+D V G VDR
Sbjct: 410 SDGGTRPLRVHVREPSFVNLQSMPAMAEGGLVADVIAAIASIDPVMGGVDR 460
>gi|221043702|dbj|BAH13528.1| unnamed protein product [Homo sapiens]
Length = 406
Score = 423 bits (1089), Expect = e-116, Method: Composition-based stats.
Identities = 237/380 (62%), Positives = 302/380 (79%), Gaps = 4/380 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
++ T+NFGPQHPAAHGVLRL++EL GE+V + DPHIGLLHRGTEKLIE KT+LQA+PYFD
Sbjct: 27 KNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFD 86
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYV+ M E AY+LAVEKLL I P R Q IRVL+ EI R+L+H++ VTT A+D+GA+
Sbjct: 87 RLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGAM 146
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP W FEEREK+ FYER SG+RMHAAY RPGGVHQD+P L++DI + +F L++
Sbjct: 147 TPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDE 206
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ +LLT NRI++ R ++IG V E+A +GFSGVM+RGSG WDLRK+QPY+ Y +++FD
Sbjct: 207 LEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFD 266
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+P+G GDCYDRYL R+ EMR+S++II QC+N++ G + D K+ PPKRA+MK
Sbjct: 267 VPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKM----PPGEIKVDDAKVSPPKRAEMKT 322
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
SMESLIHHFKLYTEGY VP G Y A+EAPKGEFGVYL+SDG ++PYRCKI+APG+AHL
Sbjct: 323 SMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLA 382
Query: 367 AMEFLCKGHQLADVSAILGS 386
++ + KGH LADV AI+G+
Sbjct: 383 GLDKMSKGHMLADVVAIIGT 402
>gi|251747920|gb|ABM06161.2| NADH dehydrogenase subunit 7 [Haplomitrium mnioides]
Length = 393
Score = 423 bits (1089), Expect = e-116, Method: Composition-based stats.
Identities = 244/394 (61%), Positives = 299/394 (75%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K+ ++FT N GPQHPAAHGV RL+LE++GE+VER +PHIGLLHRGTEKLIE KT+LQA+
Sbjct: 4 TKQIKNFTPNSGPQHPAAHGVSRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQAL 63
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDR DYV+ M QEHAY AVE+L E+P R Q IRVL+ EI RIL+HLL +TT AMD
Sbjct: 64 PYFDRSDYVSMMAQEHAYPSAVERLCNCEVPPRAQYIRVLFREITRILNHLLALTTHAMD 123
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA TP LW FEEREKL+ FYER G+RMHA+Y RPGGV QD+P L EDI + F S
Sbjct: 124 VGAPTPFLWAFEEREKLLEFYERVPGARMHASYIRPGGVAQDLPLGLSEDISPFTQQFAS 183
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++++ ++LT NRI+KQR V+IGTV + A WGFSGVM RGSG WDLRKS PY+ Y
Sbjct: 184 RIDELEEMLTNNRIWKQRLVDIGTVTAQQAVDWGFSGVMSRGSGVCWDLRKSAPYDVYDR 243
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LDFD+P+G GDCYDRY +R+ EMR+S++II QC+N++ G + A D K PP R+
Sbjct: 244 LDFDVPVGTRGDCYDRYCIRIEEMRQSIRIIMQCLNQM----PSGVIKADDRKPRPPSRS 299
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
MK+S ESLIHH K +TEG VP + AVEAPKGEFGV+L+S+G N+PYRCK RAPG+
Sbjct: 300 QMKQSTESLIHHLKPHTEGVSVPAPSTHTAVEAPKGEFGVFLVSNGTNRPYRCKARAPGF 359
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ ++ + K H LADV I G+ DIVFGEVDR
Sbjct: 360 AHLQGLDSMSKHHMLADVVTIPGTQDIVFGEVDR 393
>gi|195157528|ref|XP_002019648.1| GL12099 [Drosophila persimilis]
gi|194116239|gb|EDW38282.1| GL12099 [Drosophila persimilis]
Length = 495
Score = 423 bits (1089), Expect = e-116, Method: Composition-based stats.
Identities = 225/390 (57%), Positives = 280/390 (71%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
R+ INFGP HPAAHGVLR+ILELD E V DPHIGLLHRGTEKLIE KT+LQA+PYFD
Sbjct: 110 RTKFINFGPAHPAAHGVLRMILELDNETVMSADPHIGLLHRGTEKLIEYKTYLQALPYFD 169
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYV+ M E AYALAVEKLL IE+P R + IR +++EI R+ +H + +++ +D G +
Sbjct: 170 RLDYVSCMANEQAYALAVEKLLNIEVPRRARFIRTMFAEIMRLTNHTMAISSSILDCGGI 229
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP W FEEREKL F ERASG+R+HAAY RPGGV D+P ED+ + F L++
Sbjct: 230 TPLFWLFEEREKLYEFSERASGARLHAAYIRPGGVASDLPLGFCEDLYHFISQFKDRLDE 289
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ DL T NRI++ RN+ IG + DA +G +G ++R G WDLRK QPY+ Y E+DF+
Sbjct: 290 VEDLATENRIWRMRNIGIGCISAHDALNYGCTGPVLRACGIKWDLRKQQPYDAYDEIDFN 349
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ +G +GDCYDRYLVRM EMRES+ II QC+ + G + D KI PP+R +MK
Sbjct: 350 VVVGTNGDCYDRYLVRMREMRESLDIILQCLELM----PPGEIKVDDRKITPPQRRNMKT 405
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
ME LIHHFK +++G VP G+ Y AVE+PKGEFGVYL+SDG +PYRCKIR YAHL
Sbjct: 406 GMEDLIHHFKHFSQGIFVPPGQTYTAVESPKGEFGVYLVSDGSTRPYRCKIRPASYAHLA 465
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
M L H LADV AI+GSLDIVFGE+DR
Sbjct: 466 LMAKLAPNHLLADVVAIIGSLDIVFGEIDR 495
>gi|29831383|ref|NP_826017.1| NADH dehydrogenase subunit D [Streptomyces avermitilis MA-4680]
gi|81718123|sp|Q82DX8|NUOD1_STRAW RecName: Full=NADH-quinone oxidoreductase subunit D 1; AltName:
Full=NADH dehydrogenase I subunit D 1; AltName:
Full=NDH-1 subunit D 1
gi|29608498|dbj|BAC72552.1| putative NADH dehydrogenase I chain D (complex I) [Streptomyces
avermitilis MA-4680]
Length = 443
Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats.
Identities = 187/412 (45%), Positives = 249/412 (60%), Gaps = 22/412 (5%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K +N GPQHP+ HGVLRLILE+DGE V IG LH G EK +E +T+ Q
Sbjct: 36 KSDDERIVVNMGPQHPSTHGVLRLILEIDGETVTEARCGIGYLHTGIEKNLEYRTWTQGT 95
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R+DY+ P E AY LAVEKLLGIE IP R +IRVL E+ R+ SHL+ + T
Sbjct: 96 TFVTRMDYLTPFFNETAYCLAVEKLLGIENEIPDRASIIRVLLMELNRMSSHLVCIATGG 155
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
M++GA T ++GF +RE ++ YE +G RM+ AY RPGG+ QD+PP V+ I +
Sbjct: 156 MELGATTIMIYGFRDRELILDIYELITGLRMNHAYIRPGGLAQDLPPGAVDQIREFVKKM 215
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L + L TGN IFK R ++G + L G +G ++R +G DLRKSQPY Y
Sbjct: 216 KKNLPEYDKLATGNPIFKARMQDVGYLDLAGCMALGATGPILRSAGLPHDLRKSQPYCGY 275
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
DFD+P D Y R+L+R+ EMR+S++I+ QC++RL GPV +D KI P
Sbjct: 276 ETYDFDVPTADTCDSYGRFLIRLEEMRQSLRIVEQCLDRLA----PGPVMVADKKIAWPA 331
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
+ M SME+LIHHFKL TEG+ VP G+ Y+AVE+PKGE GV+
Sbjct: 332 QLALGPDGLGNSLDHIKKIMGTSMEALIHHFKLVTEGFRVPPGQTYSAVESPKGELGVHA 391
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +PYR R P + +LQAM +C+G Q+ADV + S+D V G VDR
Sbjct: 392 VSDGGTRPYRVHFRDPSFTNLQAMAAMCEGGQVADVIVAVASIDPVMGGVDR 443
>gi|89257087|ref|YP_514449.1| NADH dehydrogenase subunit D [Francisella tularensis subsp.
holarctica LVS]
gi|115315444|ref|YP_764167.1| NADH dehydrogenase subunit D [Francisella tularensis subsp.
holarctica OSU18]
gi|156503301|ref|YP_001429366.1| NADH dehydrogenase subunit D [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|167009479|ref|ZP_02274410.1| NADH dehydrogenase i, d subunit [Francisella tularensis subsp.
holarctica FSC200]
gi|254368323|ref|ZP_04984341.1| NADH dehydrogenase I, D subunit [Francisella tularensis subsp.
holarctica 257]
gi|290952992|ref|ZP_06557613.1| NADH dehydrogenase subunit D [Francisella tularensis subsp.
holarctica URFT1]
gi|295313812|ref|ZP_06804385.1| NADH dehydrogenase subunit D [Francisella tularensis subsp.
holarctica URFT1]
gi|122324571|sp|Q0BK54|NUOD_FRATO RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|122500212|sp|Q2A1F3|NUOD_FRATH RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|229891391|sp|A7NEK7|NUOD_FRATF RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|89144918|emb|CAJ80266.1| NADH dehydrogenase I, D subunit [Francisella tularensis subsp.
holarctica LVS]
gi|115130343|gb|ABI83530.1| NADH dehydrogenase (ubiquinone) [Francisella tularensis subsp.
holarctica OSU18]
gi|134254131|gb|EBA53225.1| NADH dehydrogenase I, D subunit [Francisella tularensis subsp.
holarctica 257]
gi|156253904|gb|ABU62410.1| NADH dehydrogenase I, subunit D [Francisella tularensis subsp.
holarctica FTNF002-00]
Length = 417
Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats.
Identities = 230/415 (55%), Positives = 294/415 (70%), Gaps = 27/415 (6%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+++T+NFGP HPAAHGVLRLILELDGE V R DPH+GLLHRGTEKL E K + Q++ Y D
Sbjct: 5 KNYTLNFGPVHPAAHGVLRLILELDGENVVRADPHVGLLHRGTEKLAEFKPYNQSIGYMD 64
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYV+ M EHAY +A+EKLL +E+P R + IRV+++E+ RIL+HLL V +D+GA+
Sbjct: 65 RLDYVSMMCNEHAYVMAIEKLLQLEVPERAKYIRVMFAEMTRILNHLLWVAACGIDLGAM 124
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE------------------ 168
T L+ F RE L YE SG+RMHAAYFRPGGV +D+P +
Sbjct: 125 TVFLYAFRVREDLFDCYEAVSGARMHAAYFRPGGVARDLPTQMPQYQKTRFTSKRKAKKL 184
Query: 169 -------LVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVM 221
+++ + + F +L++I LLT NR++KQR V+IGTV E A GF+G M
Sbjct: 185 NEPRQGSMLDFLDHFVVDFEKSLDEIDTLLTDNRLWKQRTVDIGTVTAERAKELGFTGPM 244
Query: 222 IRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL 281
+RGSG AWDLRK+QPYE Y +L+FDIPIG +GDCYDRYLVRM EMRES K+I+QCV+ L
Sbjct: 245 LRGSGVAWDLRKTQPYEVYHKLEFDIPIGANGDCYDRYLVRMAEMRESNKLIKQCVDWL- 303
Query: 282 GKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFG 341
+ G V + + K+ PPKR MK +ME LIHHFKL++EGY GEVY E PKGEFG
Sbjct: 304 -RANPGSVLSDNHKVAPPKRNAMKNNMEELIHHFKLFSEGYCTTEGEVYVGTEHPKGEFG 362
Query: 342 VYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
VY+ SDG NKPYR K+RAPG+AH+ AM+ L GH LAD AI+ ++D+VFG+VDR
Sbjct: 363 VYIKSDGANKPYRLKMRAPGFAHISAMDELLSGHMLADTPAIISTIDVVFGDVDR 417
>gi|284106848|ref|ZP_06386291.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Candidatus
Poribacteria sp. WGA-A3]
gi|283830027|gb|EFC34303.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Candidatus
Poribacteria sp. WGA-A3]
Length = 583
Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats.
Identities = 178/393 (45%), Positives = 262/393 (66%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K++ +N GPQHP+ HGVLR++LELDGE V + P +G LHRG EKL E ++Q +P
Sbjct: 195 KRTTELLLNMGPQHPSTHGVLRVVLELDGERVAKAVPDMGYLHRGVEKLAEGLHYMQVIP 254
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+ DRLDYV M +AY AVEKL+G+ IP R + +R + +E+ RI+ HL + TQA+D+
Sbjct: 255 HTDRLDYVCAMTNNYAYVRAVEKLVGVTIPERAEYVRTIVAEVQRIVGHLFWLGTQALDI 314
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+T W F ERE L+ F+E+ G+R+ Y+R GGV D+ P L+E + + +FP
Sbjct: 315 GAMTVFFWTFREREVLLDFFEQLCGARLTLNYYRIGGVDGDLTPALIERLRGFLKTFPEH 374
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + LL NRI+ R N+ + EDA +G +G +RGSG A+D+RK +PY Y +
Sbjct: 375 VQEYDTLLQRNRIWVARTKNVAVISAEDAINFGLTGPTLRGSGVAYDVRKLEPYGVYDRV 434
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++D+P+GK GD YDRY +R+ EM++S +II QC+++L GP+ A P+++PP + +
Sbjct: 435 EWDVPVGKGGDTYDRYWIRVEEMKQSARIIEQCLDQL----PEGPIMADMPQVIPPAKPN 490
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ R MESLIHHF ++T+G+ P GE Y E PKGE G +LISDG +PYR KIR+P +
Sbjct: 491 VMRDMESLIHHFIIFTQGFKPPKGETYCGTEVPKGELGFFLISDGSPRPYRMKIRSPSFV 550
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H+ A +F+ +G+ ++D+ I G+ DIV GE DR
Sbjct: 551 HMGAFDFMARGYLISDIITIFGTYDIVMGECDR 583
>gi|319779201|ref|YP_004130114.1| NADH-ubiquinone oxidoreductase chain D [Taylorella equigenitalis
MCE9]
gi|317109225|gb|ADU91971.1| NADH-ubiquinone oxidoreductase chain D [Taylorella equigenitalis
MCE9]
Length = 418
Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats.
Identities = 234/419 (55%), Positives = 298/419 (71%), Gaps = 28/419 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +++T+NFGPQHPAAHGVLRLILEL+GE+++R DPHIGLLHRGTEKL E+KTFLQ +P
Sbjct: 2 SELQNYTLNFGPQHPAAHGVLRLILELNGEVIQRADPHIGLLHRGTEKLAESKTFLQTLP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDYV+ M EHAY + +E+LLGIE+PIR Q IRV++ EI RIL+HL+++ + A+DV
Sbjct: 62 YMDRLDYVSMMCNEHAYVMGIERLLGIEVPIRAQYIRVMFDEITRILNHLMSLGSHALDV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------------- 169
GA+ L+ F ERE LM YE SG+RMHAAY+R GGV++D+P +
Sbjct: 122 GAMAGMLYMFREREDLMDCYEAVSGARMHAAYYRVGGVYRDLPETMPKHEIDSKYRNVRE 181
Query: 170 ------------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF 217
++ I + FP +++ LLT NRI+KQR VNIG V+ E A GF
Sbjct: 182 MKRLNQAREGSLLDFIEDFTQRFPKCVDEYETLLTDNRIWKQRLVNIGIVEPERAKALGF 241
Query: 218 SGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCV 277
SGVM+RG G WDLR+ QPYE Y +L+F P+G +GDCYDRYL R+ E+RES KII QCV
Sbjct: 242 SGVMLRGCGIEWDLRRKQPYEVYDKLEFMTPVGVNGDCYDRYLCRIAELRESNKIIAQCV 301
Query: 278 NRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPK 337
L K GPV + KI PPKR +K ME LIHHFK +TEG+ VP GEVY+ VE PK
Sbjct: 302 KWL--KENPGPVIVDNHKIAPPKRELIKSGMEDLIHHFKFFTEGFKVPEGEVYSCVEHPK 359
Query: 338 GEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GEFGVY+ISDG NKPYR KIRAPG+ HLQ+ + + +GH +AD ++G+ DIVFGE+DR
Sbjct: 360 GEFGVYIISDGANKPYRLKIRAPGFVHLQSFDEMTRGHMIADAVTVIGTQDIVFGEIDR 418
>gi|319789709|ref|YP_004151342.1| NADH dehydrogenase I, D subunit [Thermovibrio ammonificans HB-1]
gi|317114211|gb|ADU96701.1| NADH dehydrogenase I, D subunit [Thermovibrio ammonificans HB-1]
Length = 394
Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats.
Identities = 184/398 (46%), Positives = 257/398 (64%), Gaps = 6/398 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M +++ +N GPQHP+ HGVLRLILEL GE + D IG +HRG EKL E + ++Q
Sbjct: 1 MAERERADLILNMGPQHPSTHGVLRLILELQGEKIVGADTVIGYVHRGVEKLAEHRKYMQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTT 118
+P FDR+DYV+ E + LAVEKLLGIE +P R Q +RV+ +E+ RI SHL+ + T
Sbjct: 61 ILPVFDRVDYVSANTNELGFVLAVEKLLGIEDKVPERAQFLRVIMAELTRISSHLIWLGT 120
Query: 119 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
A+++GA++ L+ F EREK++ +E +G R+H Y R GGV D P +E++ + +
Sbjct: 121 HALELGAMSVFLYAFREREKILDLFEEIAGGRLHTGYMRIGGVAYDTTPRFLEELQEFLE 180
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
FPS +++ LLT NRI+ R +G + E A WG +G +R +G+ +D+RK PY
Sbjct: 181 LFPSKVDEYETLLTENRIWLSRTKGVGVIDKETAVNWGITGPTLRAAGSDYDVRKYYPYC 240
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
Y LDF +P+ GD YDRY VRM EMRESVKII+QC+ ++ GPV DP ++
Sbjct: 241 VYDRLDFKVPVYHAGDVYDRYRVRMDEMRESVKIIKQCLEKM----PEGPVQIEDPTVIL 296
Query: 299 PKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
P + ++ +M LI HF+L G P GEVYAAVE P+GE G Y++SDG NKPYR +IR
Sbjct: 297 PPKEEVYNTMVGLIQHFELVIHGIAPPKGEVYAAVEGPRGELGYYIVSDGTNKPYRLRIR 356
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
P ++ + L KGH +ADV +I+GSLD + GEVDR
Sbjct: 357 PPSLINIAILPELLKGHYVADVISIIGSLDPLMGEVDR 394
>gi|328950034|ref|YP_004367369.1| NAD(P)H-quinone oxidoreductase subunit H [Marinithermus
hydrothermalis DSM 14884]
gi|328450358|gb|AEB11259.1| NAD(P)H-quinone oxidoreductase subunit H [Marinithermus
hydrothermalis DSM 14884]
Length = 398
Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats.
Identities = 177/394 (44%), Positives = 258/394 (65%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ T+N GPQHP+ HGVLRL++++ GE V V PH+G LH G EK +E +T+LQ +
Sbjct: 9 ELRTEVMTLNVGPQHPSTHGVLRLVIKMAGEEVLEVQPHVGYLHTGFEKNMEHRTYLQNI 68
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
Y R+DY+ + AYALAVE+L+G E+P R Q IR++ +E+ RI SHL+ T +D
Sbjct: 69 TYTPRMDYLHSFAHDLAYALAVERLVGAEVPPRAQTIRIILNELSRIASHLVFTGTGLLD 128
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
GALTP + F ERE ++ +E SG R H Y R GG+ D+P E + ++ + D+F
Sbjct: 129 FGALTPFFYCFREREAILDLFEWVSGQRFHHNYIRIGGLKNDLPEEFIPELKKFLDTFDY 188
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+++ + + IF +R ++G + E A G +G +R SG +D+RK+ PY Y
Sbjct: 189 RVDEYEGMFRESPIFYERARDVGVIPPEVAIHLGLTGGSLRASGVNYDVRKAYPYAGYET 248
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+FD+P+G+ GD YDR +VR+ EMRES +IIRQ V RL + GP+ +P+I P R
Sbjct: 249 YEFDVPLGERGDVYDRMIVRIQEMRESARIIRQAVERL----EPGPIRDPNPQISLPPRH 304
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
++ SME++I+HFKL TEG+H P GEVY E+ +GE G Y+ISDGG+ PYR K+RAP +
Sbjct: 305 LLETSMEAVIYHFKLVTEGFHPPKGEVYVPTESARGELGYYIISDGGSMPYRVKVRAPSF 364
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ++ + C+GHQ D+ AIL SLD V G+VDR
Sbjct: 365 VNLQSLPYACEGHQFPDLVAILASLDPVMGDVDR 398
>gi|290958257|ref|YP_003489439.1| NADH dehydrogenase subunit NuoD [Streptomyces scabiei 87.22]
gi|260647783|emb|CBG70888.1| NuoD, NADH dehydrogenase subunit [Streptomyces scabiei 87.22]
Length = 446
Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats.
Identities = 186/412 (45%), Positives = 250/412 (60%), Gaps = 22/412 (5%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GPQHP+ HGVLRLILE+DGE V IG LH G EK +E +T+ Q
Sbjct: 39 RSDDERIIVNMGPQHPSTHGVLRLILEIDGETVTEARCGIGYLHTGIEKNLEYRTWTQGT 98
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R+DY+ P E AY LAVEKLLGIE IP R +IRVL E+ R+ SHL+ + T
Sbjct: 99 TFVTRMDYLTPFFNETAYCLAVEKLLGIEDEIPDRATIIRVLLMELNRLSSHLVCIATGG 158
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
M++GA T ++GF +RE ++ YE +G RM+ AY RPGG+ QD+PP V+ I +
Sbjct: 159 MELGATTIMIYGFRDRELILDIYELITGLRMNHAYIRPGGLAQDLPPGAVDQIREFVKKM 218
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L + L TGN IFK R +IG + L G +G ++R +G DLRK+QPY Y
Sbjct: 219 EKNLPEYDKLATGNPIFKARMQDIGHLDLAGCMALGATGPILRSAGLPHDLRKAQPYCGY 278
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
DFD+P D Y R+L+R+ EMR+S++I+ QC++RL + GPV D KI P
Sbjct: 279 ETYDFDVPTADTCDSYGRFLIRLEEMRQSLRIVEQCLDRL----QPGPVMVGDKKIAWPA 334
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
+ M SME+LIHHFKL TEG+ VP G+ YAAVE+PKGE GV++
Sbjct: 335 QLALGPDGLGNSLDHIKKIMGTSMEALIHHFKLVTEGFRVPPGQAYAAVESPKGELGVHV 394
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +P+R R P + +LQAM +C+G Q+ADV + S+D V G VDR
Sbjct: 395 VSDGGTRPFRVHFRDPSFTNLQAMAAMCEGGQVADVIVAVASIDPVMGGVDR 446
>gi|296268276|ref|YP_003650908.1| NADH dehydrogenase I subunit D [Thermobispora bispora DSM 43833]
gi|296091063|gb|ADG87015.1| NADH dehydrogenase I, D subunit [Thermobispora bispora DSM 43833]
Length = 438
Score = 422 bits (1084), Expect = e-116, Method: Composition-based stats.
Identities = 184/412 (44%), Positives = 250/412 (60%), Gaps = 18/412 (4%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GPQHP+ HGVLRL+L LDGE V V P IG LH G EK +E +T+ Q V
Sbjct: 27 ESGEERLVVNMGPQHPSTHGVLRLVLTLDGETVTEVRPVIGYLHTGIEKNMEYRTWTQGV 86
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R+DY++P+ E AY +AVEKLLGI IP R + +RVL E+ RI SHL+ V T
Sbjct: 87 TFVTRMDYLSPIFNETAYCMAVEKLLGITDRIPERAKTLRVLMMELNRISSHLVAVATYG 146
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
M++GA + ++GF ERE ++ +E +G RM+ AY RPGGV D+P V+ IG +
Sbjct: 147 MELGATSIMIYGFREREMVLDLFEYITGLRMNMAYVRPGGVSVDLPAGAVDKIGEFLKVM 206
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P + D+ LL N ++ +R ++ + L G +G ++R +G WDLRK+QPY Y
Sbjct: 207 PGRIKDMRKLLDENPVYTRRTKDVAYLDLTGCMALGVTGPVLRAAGLPWDLRKTQPYLGY 266
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+FD+P D Y RYLVRM EM ES+KII Q ++RL G K PV D KI P
Sbjct: 267 ETYEFDVPTANTCDVYGRYLVRMAEMEESLKIIEQALDRLTGPLKGEPVMIEDKKIGWPS 326
Query: 301 R----------------ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
R M SME+LIHHFKL TEG+ VP G+ YAAVE+P+GE G ++
Sbjct: 327 RLALGPDGLGNSPDHIAHIMGTSMEALIHHFKLVTEGFRVPAGQAYAAVESPRGELGAHV 386
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +PYR R P + +LQA+ +C+G +ADV + + S+D V G VDR
Sbjct: 387 VSDGGTRPYRVHFRDPSFTNLQALPAMCEGGMVADVISAIASIDPVMGGVDR 438
>gi|200004054|ref|YP_002221388.1| NADH dehydrogenase subunit 7 [Blastocystis sp. NandII]
gi|198385476|gb|ACH86069.1| NADH dehydrogenase subunit 7 [Blastocystis sp. NandII]
Length = 393
Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats.
Identities = 217/396 (54%), Positives = 309/396 (78%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ +++ +SFT+NFGPQHPA HGVLRLI+EL GEIV++ DPHIG LHRGTEKLIE KT+LQ
Sbjct: 2 LKRRQLKSFTLNFGPQHPATHGVLRLIIELRGEIVQKADPHIGFLHRGTEKLIENKTYLQ 61
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDY++ + EH Y LAVEKLL ++P+R Q IRV+++EI RI++HL+ + + A
Sbjct: 62 ALPYFDRLDYISMLENEHCYVLAVEKLLQCKVPLRAQYIRVIFAEITRIINHLIGLGSHA 121
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+D+G+ T +W FEEREKL+ FYERA+G+RMH YFRPGGV QDIP L+ DI +C+ F
Sbjct: 122 LDIGSTTVIIWLFEEREKLLEFYERATGARMHGNYFRPGGVRQDIPLGLLNDIYIFCNEF 181
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
LND+ +LLT NRI+++R V+IG + +DA +GV++R +G WDLRK+ PY+ Y
Sbjct: 182 NERLNDMEELLTNNRIWRERLVDIGVITKQDALDLNLTGVLLRSTGIKWDLRKTFPYDAY 241
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+ + F++P+G +GDC+DRY++R+ EMR+S+ II QC+N++ GP+ + KI P
Sbjct: 242 NRVKFEVPVGSNGDCFDRYVMRIEEMRQSIYIISQCINQISE----GPIKTDNYKISIPS 297
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ +K+SMESLI HFK+++EG+ V EVY ++EAPKGEFG+YL+SDG NKPYRC +++
Sbjct: 298 KIQIKQSMESLIDHFKIFSEGFKVEPNEVYCSIEAPKGEFGIYLVSDGSNKPYRCHLKSS 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ HLQ++++L +GH +ADV+ ++GSLDIVFG++DR
Sbjct: 358 GFIHLQSLDYLTRGHLIADVTTVIGSLDIVFGDIDR 393
>gi|159899601|ref|YP_001545848.1| NADH dehydrogenase I subunit D [Herpetosiphon aurantiacus ATCC
23779]
gi|218534356|sp|A9B4Z7|NUOD1_HERA2 RecName: Full=NADH-quinone oxidoreductase subunit D 1; AltName:
Full=NADH dehydrogenase I subunit D 1; AltName:
Full=NDH-1 subunit D 1
gi|159892640|gb|ABX05720.1| NADH dehydrogenase I, D subunit [Herpetosiphon aurantiacus ATCC
23779]
Length = 422
Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats.
Identities = 176/395 (44%), Positives = 255/395 (64%), Gaps = 1/395 (0%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
D+ +S ++ GPQHP+ HGVLRL +EL+GE V ++ P +G LH G EK IETKT+ ++
Sbjct: 29 DENGEQSMVLSMGPQHPSTHGVLRLAVELNGENVVQLAPDVGFLHTGIEKTIETKTYTKS 88
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+ DR+DY+APM+ Y A+EKL+ ++P R Q +RVL E+ RI SHL+ + T A+
Sbjct: 89 IVLTDRMDYLAPMSNNMVYVAAIEKLMQQDVPERAQTLRVLLLELTRINSHLVWLGTHAL 148
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D+ A++ + ERE ++ +E +G+RM +YFR GG+ DIP + + + + F
Sbjct: 149 DLAAMSVFFYAMREREYILDIFEMLTGARMMTSYFRVGGLAWDIPADFIPTVEDFLTHFL 208
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ DLLT N ++KQR +G V DA G SG +R SG WDLRK+ PY Y
Sbjct: 209 PKVDEYEDLLTNNLLWKQRTKGVGVVNAADAIALGLSGANLRASGVDWDLRKTMPYSGYE 268
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
FD+P+G+ GD YDRY R+ EMRESVKI RQ + R+ + P + K+ PP +
Sbjct: 269 TYQFDVPVGQAGDIYDRYRCRVQEMRESVKIARQAIERVKQMHGQ-PYVTENRKVAPPPK 327
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+++ SMESLIHHFKL+TEG+ P G YAA+E+P+GE G Y++SDG KP+R RAP
Sbjct: 328 SEITYSMESLIHHFKLWTEGFRPPRGSAYAAIESPRGEIGCYVVSDGTPKPWRVHFRAPS 387
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +LQA+ + KG +AD+ A++ S+D V GEVDR
Sbjct: 388 FINLQALPHIAKGKLMADLVALIASIDPVLGEVDR 422
>gi|195389048|ref|XP_002053190.1| GJ23477 [Drosophila virilis]
gi|194151276|gb|EDW66710.1| GJ23477 [Drosophila virilis]
Length = 501
Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats.
Identities = 222/386 (57%), Positives = 280/386 (72%), Gaps = 4/386 (1%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
INFGP HPAAHGVLR+ILELD E V DPHIGLLHRGTEKLIE KT+ QA+PYFDRLDY
Sbjct: 120 INFGPAHPAAHGVLRMILELDNETVLSADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 179
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
V+ M E AY+LAVEKLL IEIP R + IR L E+ R+ +H + V++ +D GA+TP
Sbjct: 180 VSCMACEQAYSLAVEKLLNIEIPPRAKYIRTLCGELMRLTNHTMAVSSSVLDCGAITPLF 239
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
W FEEREKL F ER SG+R+HAAY RPGGV QD+P +D+ + +F L+++ D+
Sbjct: 240 WLFEEREKLYEFSERLSGARLHAAYIRPGGVAQDMPIGFSDDLYRFIMAFSDRLDEVEDV 299
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
+T NRI++ RN+ IG + DA +G +G ++R +G WDLRK QPY+ Y+++ FD+ IG
Sbjct: 300 VTDNRIWRMRNIGIGRISAHDALNYGCTGPVLRATGIKWDLRKQQPYDAYADMKFDVAIG 359
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
GDCYDRYLVR++EMRES II QC+N + G + D KI+PP+R MK ME
Sbjct: 360 SQGDCYDRYLVRVLEMRESCSIILQCLNLM----PPGHIKVDDRKIMPPQRRKMKTGMED 415
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
LIHHFK +++GY VP GE Y AVE+PKGEFGVYL+SDG ++PYRCKIR Y HL +
Sbjct: 416 LIHHFKHFSQGYCVPPGETYTAVESPKGEFGVYLVSDGSSRPYRCKIRPASYTHLALLSK 475
Query: 371 LCKGHQLADVSAILGSLDIVFGEVDR 396
L + LADV AI+GSLDIVFGE+DR
Sbjct: 476 LSPSYLLADVVAIIGSLDIVFGEIDR 501
>gi|225164242|ref|ZP_03726515.1| NADH dehydrogenase (quinone) [Opitutaceae bacterium TAV2]
gi|224801147|gb|EEG19470.1| NADH dehydrogenase (quinone) [Opitutaceae bacterium TAV2]
Length = 419
Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats.
Identities = 179/396 (45%), Positives = 244/396 (61%), Gaps = 3/396 (0%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ +I+ GP HP+ HGVLRL LELDGEIV + DP IG LHRG EK+ E T+ Q
Sbjct: 27 IAASDDEKMSISMGPSHPSTHGVLRLQLELDGEIVTKCDPVIGYLHRGDEKIAENMTYNQ 86
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
VPY DRLDY+AP+ AYA+AVE+L G+E+P R Q IRV+ +E+ RI SHLL + A
Sbjct: 87 FVPYTDRLDYLAPLANNVAYAIAVERLAGLEVPARCQAIRVIVAELARISSHLLGFGSFA 146
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MD G+ T ++ F EREKL +E +G+R +Y R GG+ +D+P ++ + +CD F
Sbjct: 147 MDTGSWTAFMYQFNEREKLYKLFEELTGARFTTSYTRIGGLARDVPEGWIQRVDAFCDQF 206
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L ++ LLT NRIF R +G + EDA +G +G +RGSG +D+RK +PY Y
Sbjct: 207 LPLLEEMLGLLTRNRIFIDRTEGVGVISREDALSYGLTGPNLRGSGVPFDIRKDKPYCGY 266
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+FD+P+G GD YDRYL R EMR+SV+I++Q + G + +I P+
Sbjct: 267 ENYEFDVPVGTKGDSYDRYLCRGEEMRQSVRIVKQAIKNFPGGAW---YAEDARRIYAPR 323
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ + SME LI++F L TEG +P GEVY E PKG G Y++S GG P+R KIR+P
Sbjct: 324 KDKVLTSMEELINNFMLVTEGPQMPPGEVYFEAENPKGALGFYIVSKGGGVPWRMKIRSP 383
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ L M + G D++AILGS D V GE DR
Sbjct: 384 SFCTLSIMPKVGVGCLFTDLTAILGSFDFVMGEADR 419
>gi|329935994|ref|ZP_08285794.1| NADH dehydrogenase subunit NuoD [Streptomyces griseoaurantiacus
M045]
gi|329304472|gb|EGG48350.1| NADH dehydrogenase subunit NuoD [Streptomyces griseoaurantiacus
M045]
Length = 436
Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats.
Identities = 183/412 (44%), Positives = 249/412 (60%), Gaps = 22/412 (5%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K +N GPQHP+ HGVLRLILE+DGE V IG LH G EK +E +T+ Q
Sbjct: 29 KSDDERIIVNMGPQHPSTHGVLRLILEIDGETVTEARCGIGYLHTGIEKNLEYRTWTQGT 88
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R+DY+ P E AY LAVEKLLGIE +P R +IRVL E+ R+ SHL+ + T
Sbjct: 89 TFVTRMDYLTPFFNEAAYCLAVEKLLGIEDQVPDRATIIRVLLMELNRLSSHLVAIATGG 148
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
M++GA T ++GF +RE ++ YE +G RM+ A+ RPGG+ QD+PP V+ I +
Sbjct: 149 MELGATTIMIYGFRDRELILDIYELITGLRMNHAFIRPGGLAQDLPPGAVDQIREFVKKM 208
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L + L TGN IFK R ++G + L G +G ++R +G DLRKSQPY Y
Sbjct: 209 RKNLPEYDKLATGNPIFKARMQDVGYLDLAGCMALGATGPILRSTGLPHDLRKSQPYCGY 268
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
DFD+P D Y R+L+R+ EMR+S++I+ QC++RL + GPV +D KI P
Sbjct: 269 ETYDFDVPTADTCDSYGRFLIRLEEMRQSLRIVEQCLDRL----QPGPVMVADKKIAWPA 324
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
+ M SME+LIHHFKL TEG+ VP G+ Y A+E+PKGE G ++
Sbjct: 325 QLALGPDGLGNSLDHIKNIMGTSMEALIHHFKLVTEGFRVPPGQAYVAIESPKGELGAHV 384
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +PYR R P + +LQAM +C+G Q+ADV + S+D V G VDR
Sbjct: 385 VSDGGTRPYRVHFRDPSFTNLQAMAAMCEGGQVADVIVAVASIDPVMGGVDR 436
>gi|299138540|ref|ZP_07031719.1| NADH dehydrogenase I, D subunit [Acidobacterium sp. MP5ACTX8]
gi|298599786|gb|EFI55945.1| NADH dehydrogenase I, D subunit [Acidobacterium sp. MP5ACTX8]
Length = 441
Score = 420 bits (1081), Expect = e-115, Method: Composition-based stats.
Identities = 190/395 (48%), Positives = 252/395 (63%), Gaps = 4/395 (1%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
D + +N GPQHP+ HGVLRL++E+DGE + + P IG LH G EK E K + Q
Sbjct: 51 DAISDHTMILNMGPQHPSTHGVLRLVVEIDGETIVSLAPDIGYLHTGIEKTCEAKFYQQV 110
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
VP DR+DY+APM AYALAVEKLL +EIP R Q +RVL++E+ RI SHL+ + T AM
Sbjct: 111 VPLTDRIDYLAPMTNNLAYALAVEKLLQLEIPDRAQWLRVLFNELMRINSHLVWLGTHAM 170
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D+GALT L+ F ERE+L+ +E SG RM +Y R GGV + P +L + I + FP
Sbjct: 171 DIGALTVFLYCFREREQLLRIFEAVSGQRMMTSYIRIGGVSLEPPLDLYKQIRAFLKDFP 230
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
S + + LL GN I++ R +G + DA G +G +R SG +DLR+ PY Y
Sbjct: 231 SKIEEYEGLLNGNPIWRSRLEGVGFLSAADAIALGVTGPPLRASGIDFDLRRDMPYSSYE 290
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ F++P GD + RYLVRM E+RESVKI Q ++ + G ++A PKIV P R
Sbjct: 291 KFQFNVPTSTVGDVWARYLVRMQELRESVKICLQALDGM----PEGRITADAPKIVLPDR 346
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
MK MESLIHHFK+ TEG+ VP GE ++VEAP G Y++SDG KPYR +R
Sbjct: 347 EQMKTQMESLIHHFKIVTEGFQVPAGEATSSVEAPHGMMNYYVVSDGTAKPYRVHMRNAD 406
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+A LQA+E +CKG LADV A++GS+DIV G +DR
Sbjct: 407 FATLQALETMCKGRLLADVVAVIGSIDIVLGAIDR 441
>gi|56752771|gb|AAW24597.1| SJCHGC09267 protein [Schistosoma japonicum]
Length = 447
Score = 420 bits (1081), Expect = e-115, Method: Composition-based stats.
Identities = 226/392 (57%), Positives = 288/392 (73%), Gaps = 17/392 (4%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ +S +NFGPQHPAAHGVLRLI+ELDGE + R+DPHIGLLHRGTEKLIE KT+ QA+PY
Sbjct: 73 EVQSVHLNFGPQHPAAHGVLRLIMELDGESIIRLDPHIGLLHRGTEKLIEYKTYTQALPY 132
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
FDRLDY + M E YALAVEKLL IE+P R + IR L++EI RI++H L V + +D+G
Sbjct: 133 FDRLDYASMMCNEQCYALAVEKLLNIEVPPRAKYIRTLFAEITRIMNHCLAVGSTILDIG 192
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A+TP W FEEREK+ FYER S + + + FP L
Sbjct: 193 AITPIFWLFEEREKMFEFYERVSVLVCTLHI-------------FAQVVYRFIQKFPQRL 239
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
++ISDLL N I+ R ++G V EDA GFSGVM+RGSG WDLRK+QPY+ Y+++D
Sbjct: 240 DEISDLLLDNPIWITRTKDVGVVSAEDALDLGFSGVMLRGSGIKWDLRKTQPYDAYADMD 299
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FD+PIG HGDCYDR+++RM EMR+S++II QC+N++ G + D KI PPKRA+M
Sbjct: 300 FDVPIGVHGDCYDRFMIRMEEMRQSLRIIEQCLNKM----PKGEIRVDDAKICPPKRAEM 355
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K SME+LIHHFKL++EGY VP G Y A+EAPKGEFGVYL+SDG NKPYRCKI+APG++H
Sbjct: 356 KHSMEALIHHFKLFSEGYLVPPGSTYTAIEAPKGEFGVYLVSDGTNKPYRCKIKAPGFSH 415
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
L A++ +C+G +ADV A++G+LDIVFGEVDR
Sbjct: 416 LAAIDKMCRGFLIADVVAVIGTLDIVFGEVDR 447
>gi|302553429|ref|ZP_07305771.1| NADH dehydrogenase (quinone), D subunit [Streptomyces
viridochromogenes DSM 40736]
gi|302471047|gb|EFL34140.1| NADH dehydrogenase (quinone), D subunit [Streptomyces
viridochromogenes DSM 40736]
Length = 440
Score = 420 bits (1081), Expect = e-115, Method: Composition-based stats.
Identities = 184/412 (44%), Positives = 250/412 (60%), Gaps = 22/412 (5%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GPQHP+ HGVLRLILE++GE V IG LH G EK +E +T+ Q
Sbjct: 33 RADDERIVVNMGPQHPSTHGVLRLILEIEGETVTEARCGIGYLHTGIEKNLEYRTWTQGT 92
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R+DY+ P E AY L VEKLLGIE IP R +IRVL E+ R+ SHL+ + T
Sbjct: 93 TFVTRMDYLTPFFNETAYCLGVEKLLGIEDQIPDRASIIRVLLMELNRLSSHLVCIATGG 152
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
M++GA T ++GF +RE ++ YE +G RM+ AY RPGG+ QD+PP V+ I +
Sbjct: 153 MELGATTIMIYGFRDRELILDIYELITGLRMNHAYIRPGGLAQDLPPGAVDQIREFVKKM 212
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L + L TGN IFK R ++G + L G +G ++R +G DLRK+QPY Y
Sbjct: 213 KKNLPEYDKLATGNPIFKARMQDVGYLDLAGCMALGATGPILRSTGLPHDLRKTQPYCGY 272
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
DF+IP D Y R+L+R+ EMR+S++I+ QC++RL + GPV +D KI P
Sbjct: 273 ETYDFEIPTADTCDSYGRFLIRLEEMRQSLRIVEQCLDRL----QPGPVMVADKKIAWPA 328
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
+ M SME+LIHHFKL TEG+ VP G+ YAAVE+PKGE GV++
Sbjct: 329 QLALGPDGLGNSLDHIKKIMGTSMEALIHHFKLVTEGFRVPPGQTYAAVESPKGELGVHV 388
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +PYR R P + +LQAM +C+G Q+ADV + S+D V G VDR
Sbjct: 389 VSDGGTRPYRVHFRDPSFTNLQAMAAMCEGGQVADVIVAVASIDPVMGGVDR 440
>gi|320160242|ref|YP_004173466.1| NADH-quinone oxidoreductase subunit D [Anaerolinea thermophila
UNI-1]
gi|319994095|dbj|BAJ62866.1| NADH-quinone oxidoreductase chain D [Anaerolinea thermophila UNI-1]
Length = 416
Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats.
Identities = 184/392 (46%), Positives = 254/392 (64%), Gaps = 4/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ + +N GPQHP+ HGVLRL+LELDGEIV P IG LH G EK +E KT+ +A
Sbjct: 29 QGETMLLNMGPQHPSTHGVLRLLLELDGEIVVNCIPDIGFLHTGVEKNMENKTYQKAEVM 88
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDY+ P+ Y LAVEKLL +++P R Q IRV+ +E+ RI SHLL + T A+D+
Sbjct: 89 TDRLDYLNPIGNNLVYCLAVEKLLDLDVPPRAQAIRVILAELTRIGSHLLWLGTSALDLA 148
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++ L+ EREK++ +E SG RM Y RPGG+ +D+P E + + D P +
Sbjct: 149 AMSVFLYTMREREKILDIFEMVSGQRMMTTYIRPGGLWRDVPVEFEAAVYKFIDELPREI 208
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
DLL N +F R + T+ ++ +G +G ++R +G A+D+RK+ PY Y + D
Sbjct: 209 QKYHDLLDENELFLDRTKGVATITRDECIAYGVTGPVLRATGMAYDIRKAIPYSGYEQYD 268
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F+IP GD Y RY VRM EM ES+KIIRQ +++L GPV +++ K VPP R+++
Sbjct: 269 FNIPTRTEGDVYARYAVRMDEMEESLKIIRQALDKL----PYGPVRSNNRKYVPPPRSEI 324
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
SME+LIHHFKL+TEG++ P G VY A E+P+GE GV+L SDGG KPYR R P +A+
Sbjct: 325 GVSMEALIHHFKLWTEGFYPPKGSVYVATESPRGELGVFLESDGGPKPYRVHYRTPTFAN 384
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
LQ M L +G +ADV A +GS+DIV G+ DR
Sbjct: 385 LQVMPILTRGQFIADVVAAIGSIDIVLGDADR 416
>gi|171914657|ref|ZP_02930127.1| NADH dehydrogenase I, D subunit [Verrucomicrobium spinosum DSM
4136]
Length = 419
Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats.
Identities = 184/391 (47%), Positives = 246/391 (62%), Gaps = 4/391 (1%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+N GP HPA HGVLRL+LELDGEI+ + DP +G LHRG EK+ E + Q VPY
Sbjct: 33 GEKLVLNMGPSHPATHGVLRLVLELDGEIITKADPDVGYLHRGDEKIAENMHYNQFVPYT 92
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DRLDY+AP+ AYA+AVEKL+G ++P RG+ IRV+ E+ RI SHLL V AMDVGA
Sbjct: 93 DRLDYLAPLANNVAYAMAVEKLMGWKLPERGEAIRVICCEMARISSHLLGVGVFAMDVGA 152
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
++ L+ F EREK+ E+ +G+R +Y R GG +D+ + + + P ++
Sbjct: 153 MSVFLYTFTEREKIYNLSEQLTGARFTTSYTRVGGQTRDMNEAFISGLKTFLKELPPVID 212
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
++ LL+ NRIF R +G + EDA +G SG +R +G +D+RK+ PY Y + +F
Sbjct: 213 EMDALLSRNRIFLDRTQGLGIITKEDALSFGISGPNLRSTGIDFDIRKAHPYLGYEKYEF 272
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
DIP+G GD YDRYL RM EMR+S++I+ Q + L G GPV+ DPK PK+ +
Sbjct: 273 DIPVGTTGDSYDRYLCRMEEMRQSIRILNQVLADLPG----GPVNVGDPKNRLPKKEGVL 328
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
ME LIHHF + T+G P GEVY E PKGE G Y+ S GG PYR KIR+P + +L
Sbjct: 329 MKMEELIHHFIVATQGLDAPAGEVYFGAENPKGELGFYICSKGGGVPYRLKIRSPSFVNL 388
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + GH L+DV AILGS D V GE DR
Sbjct: 389 SILPKILPGHMLSDVPAILGSFDFVMGECDR 419
>gi|170583233|ref|XP_001896488.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial,
putative [Brugia malayi]
gi|158596293|gb|EDP34666.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial,
putative [Brugia malayi]
Length = 471
Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats.
Identities = 242/396 (61%), Positives = 300/396 (75%), Gaps = 9/396 (2%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M +K + +NFGPQHPAAHGVLRLILELD E+V + PHIGLLHRGTEKLIE KT+ Q
Sbjct: 85 MHEKPLHYYLLNFGPQHPAAHGVLRLILELDNEMVMKATPHIGLLHRGTEKLIEYKTYTQ 144
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVPYFDR+DYV+ M E A+ALAVEKLLGI+IP + L +E+ RI +HL+ VTT A
Sbjct: 145 AVPYFDRMDYVSMMCNETAFALAVEKLLGIDIPAKT-----LMNELTRIQNHLMGVTTHA 199
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+DVGA+TP W FEEREK+ F ERA G+RMH+ Y RPGGV D+P ++D+ W F
Sbjct: 200 LDVGAMTPLFWMFEEREKMFEFTERACGARMHSNYVRPGGVAWDLPLGWMDDVYDWALRF 259
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P L+ + DLLTGNRIF R V+IG VK EDA WGFSGVM+RGSG WD+RK+QPY+ Y
Sbjct: 260 PQRLDMMEDLLTGNRIFMSRTVDIGLVKAEDALLWGFSGVMLRGSGIKWDIRKAQPYDAY 319
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
++DFD+PIG GDCYDRYL+RM EMRESV+II +C+N++ G + D K+VPPK
Sbjct: 320 DQVDFDVPIGVKGDCYDRYLIRMEEMRESVRIIFECLNKMPA----GEIKVDDHKVVPPK 375
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
RA+MK++MESLIHHFK YTEGY VP G Y VEAPKGEFGVYL+S G +KPYRC R+P
Sbjct: 376 RAEMKQNMESLIHHFKYYTEGYQVPPGATYVPVEAPKGEFGVYLVSHGESKPYRCFARSP 435
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ HL A++ +C L+DV A++G+LD+VFGE+DR
Sbjct: 436 GFPHLAAIDDICHLSMLSDVVAVIGTLDLVFGEIDR 471
>gi|223937079|ref|ZP_03628987.1| NADH dehydrogenase I, D subunit [bacterium Ellin514]
gi|223894360|gb|EEF60813.1| NADH dehydrogenase I, D subunit [bacterium Ellin514]
Length = 423
Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats.
Identities = 192/398 (48%), Positives = 253/398 (63%), Gaps = 6/398 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + + +N GP HPA HGVLRL+LELDGEI+ + P +G LHRG EK+ E T+ Q
Sbjct: 30 LPEAEGEKMVLNMGPSHPATHGVLRLVLELDGEIITKAAPDVGYLHRGDEKIAENMTYTQ 89
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTT 118
+PY DRLDY+AP+ AYALAVEKL+GI+ +P+R Q IRV+ E+ R+ +HLL +
Sbjct: 90 FIPYTDRLDYLAPLANNVAYALAVEKLMGIDKDLPLRCQYIRVICCELARVSAHLLGLGA 149
Query: 119 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
AMDVGALT L F +RE + E +G+R +Y R GGV +DIPP VE +CD
Sbjct: 150 FAMDVGALTVFLHTFTQRETIYNLCEALTGARFTTSYTRIGGVSRDIPPGWVEQCRKFCD 209
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
++ LLT NRIF R ++G + EDA +G +G +RGSG +D+RK+ PY
Sbjct: 210 EVVVNFDESEKLLTRNRIFVDRTRDMGVISREDAIDYGLTGPNLRGSGVDFDMRKAHPYL 269
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
Y +L FDIP G GDCYDRYLVRM EMR+SV+I+RQC+++L GP+ +D K+
Sbjct: 270 VYDKLQFDIPTGSVGDCYDRYLVRMEEMRQSVRILRQCLDQLPD----GPIRVADGKVGL 325
Query: 299 PKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
P + + SME LIH F T+G + P GE+Y E PKGE G Y+ S GG P R KIR
Sbjct: 326 PPKEKVLTSMEELIHQFINVTQGDNAPPGEIYFGAENPKGELGFYINSTGGGTPNRMKIR 385
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AP + +L + L GH ++D AILGSLD V GE DR
Sbjct: 386 APSFVNLSILPHLLPGHMMSDTVAILGSLDFVMGECDR 423
>gi|198455088|ref|XP_001359850.2| GA11278 [Drosophila pseudoobscura pseudoobscura]
gi|198133088|gb|EAL29002.2| GA11278 [Drosophila pseudoobscura pseudoobscura]
Length = 517
Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats.
Identities = 224/390 (57%), Positives = 279/390 (71%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
R+ INFGP HPAAHGVLR+ILELD E V DPHIGLLHRGTEKLIE KT+LQA+PYFD
Sbjct: 132 RTKFINFGPAHPAAHGVLRMILELDNETVMSADPHIGLLHRGTEKLIEYKTYLQALPYFD 191
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYV+ M E AYAL VEKLL IE+P R + IR +++EI R+ +H + +++ +D G +
Sbjct: 192 RLDYVSCMANEQAYALGVEKLLNIEVPRRARFIRTMFAEIMRLTNHTMAISSSILDCGGI 251
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP W FEEREKL F ERASG+R+HAAY RPGGV D+P ED+ + F L++
Sbjct: 252 TPLFWLFEEREKLYEFSERASGARLHAAYIRPGGVASDLPLGFCEDLYHFIGQFKDRLDE 311
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ DL T NRI++ RN+ IG + DA +G +G ++R G WDLRK QPY+ Y E+DF+
Sbjct: 312 VEDLATENRIWRMRNIGIGCISAHDALNYGCTGPVLRACGIKWDLRKQQPYDAYDEIDFN 371
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ +G +GDCYDRYLVRM EMRES+ II QC+ + G + D KI PP+R +MK
Sbjct: 372 VVVGTNGDCYDRYLVRMREMRESLDIILQCLELM----PPGEIKVDDRKITPPQRRNMKT 427
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
ME LIHHFK +++G VP G+ Y AVE+PKGEFGVYL+SDG +PYRCKIR YAHL
Sbjct: 428 GMEDLIHHFKHFSQGIFVPPGQTYTAVESPKGEFGVYLVSDGSTRPYRCKIRPASYAHLA 487
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
M L H LADV AI+GSLDIVFGE+DR
Sbjct: 488 LMAKLAPNHLLADVVAIIGSLDIVFGEIDR 517
>gi|254382440|ref|ZP_04997799.1| NADH dehydrogenase subunit D [Streptomyces sp. Mg1]
gi|194341344|gb|EDX22310.1| NADH dehydrogenase subunit D [Streptomyces sp. Mg1]
Length = 446
Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats.
Identities = 179/412 (43%), Positives = 248/412 (60%), Gaps = 22/412 (5%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GPQHP+ HGVLRLILE+DGE V IG LH G EK +E + + Q
Sbjct: 39 RADDERIVVNMGPQHPSTHGVLRLILEIDGETVTEARCGIGYLHTGIEKNLEFRNWTQGT 98
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R+DY+ P E AY L VEKLLGI IP R ++RVL E+ R+ SHL+ + T
Sbjct: 99 TFVTRMDYLTPFFNETAYCLGVEKLLGITDQIPDRATVLRVLLMELNRLSSHLVCIATGG 158
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
M++GA T ++GF +RE ++ +E +G RM+ A+ RPGG+ QD+PP V+ + + +
Sbjct: 159 MELGATTIMIYGFRDRELILDIFELITGLRMNHAFIRPGGLAQDLPPGAVDQLRDFVKTM 218
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L + L TGN IFK R ++G + L G +G ++R +G DLRKS PY Y
Sbjct: 219 KKNLPEYDKLATGNPIFKARMQDVGYLDLTGCMALGATGPILRSAGLPHDLRKSDPYCGY 278
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+FD+P + D Y R+L+R+ EMR+S++I+ QC+ RL + GPV +D KI P
Sbjct: 279 ENYEFDVPTTESCDSYGRFLIRLEEMRQSLRIVEQCLERL----EPGPVMVADKKIAWPA 334
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
R M SME+LIHHFKL TEG+ VP G+ YAAVE+PKGE GV++
Sbjct: 335 QLAMGPDGLGNSLDHIRTIMGTSMEALIHHFKLVTEGFRVPAGQAYAAVESPKGELGVHV 394
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +PYR R P + +LQAM +C+G Q+ADV + S+D V G VDR
Sbjct: 395 VSDGGTRPYRVHFRDPSFTNLQAMAAMCEGGQVADVIVAVASIDPVMGGVDR 446
>gi|195445455|ref|XP_002070332.1| GK11092 [Drosophila willistoni]
gi|194166417|gb|EDW81318.1| GK11092 [Drosophila willistoni]
Length = 510
Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats.
Identities = 224/386 (58%), Positives = 288/386 (74%), Gaps = 4/386 (1%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
INFGP HPAAHGVLR+ILELD E + DPHIGLLHRGTEKLIE KT+LQA+PYFDRLDY
Sbjct: 129 INFGPAHPAAHGVLRMILELDNETILSADPHIGLLHRGTEKLIEHKTYLQALPYFDRLDY 188
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
V+ M E AY+LAVEKLL IE+P R + IR L++E+ R+ +H + V++ +D GA+TP
Sbjct: 189 VSCMANEQAYSLAVEKLLNIEVPRRAKYIRTLFAELMRLTNHTMAVSSAILDCGAITPLF 248
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
W FEEREK+ F ERASG+RMHA Y RPGGV DIP ED+ + F L+++ D+
Sbjct: 249 WLFEEREKMYEFSERASGARMHACYIRPGGVASDIPLGFSEDLYAFITQFKDRLDEVEDV 308
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
+T NRI++ RN+ IG + +A +G SG ++RG+G WDLRK QPY+ Y EL+FD+ +G
Sbjct: 309 ITDNRIWRMRNIGIGQITAYEALNYGCSGPVLRGTGIKWDLRKQQPYDAYPELEFDVAVG 368
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
++GDCYDRYLVRM EMRES++II+QC+ ++ +G + D KI PP+R +MK ME
Sbjct: 369 RNGDCYDRYLVRMYEMRESLRIIQQCLEKM----PLGEIKVDDRKITPPQRRNMKLGMED 424
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
LIHHFK +++G+ VP G+ Y AVE+PKGEFGVYL+SDG ++PYRCKIR YAHL M
Sbjct: 425 LIHHFKYFSQGFAVPPGQTYTAVESPKGEFGVYLVSDGTSRPYRCKIRPASYAHLAMMRK 484
Query: 371 LCKGHQLADVSAILGSLDIVFGEVDR 396
+ H LADV AI+GSLDIVFGE+DR
Sbjct: 485 IAPTHMLADVCAIIGSLDIVFGEIDR 510
>gi|297192785|ref|ZP_06910183.1| NADH dehydrogenase subunit D (NuoD) [Streptomyces pristinaespiralis
ATCC 25486]
gi|197721028|gb|EDY64936.1| NADH dehydrogenase subunit D (NuoD) [Streptomyces pristinaespiralis
ATCC 25486]
Length = 440
Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats.
Identities = 183/412 (44%), Positives = 251/412 (60%), Gaps = 22/412 (5%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K +N GPQHP+ HGVLRLILE+DGE V IG LH G EK +E +T+ Q
Sbjct: 33 KADDERIVVNMGPQHPSTHGVLRLILEIDGETVTEARCGIGYLHTGIEKNLEYRTWTQGT 92
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R+DY+ P E AY L VE+LLGIE IP R +IRVL E+ R+ SHL+ + T
Sbjct: 93 TFVTRMDYLTPFFNETAYCLGVERLLGIEDQIPDRATVIRVLLMELNRLSSHLVCIATGG 152
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
M++GA T ++GF +RE ++ YE +G RM+ AY RPGG+ QD+PP V+ + + +
Sbjct: 153 MELGATTIMIYGFRDRELILDIYELITGLRMNHAYIRPGGLAQDLPPGAVDQLREFVKTM 212
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L + L TGN IFK R ++G + L G +G ++R +G A DLRK+ PY Y
Sbjct: 213 KKNLPEYDKLATGNPIFKARMQDVGYLDLTGCMALGATGPILRSTGLAHDLRKTDPYCGY 272
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
DFD+P D Y R+L+R+ EMR+S++I+ QC++RL + GPV +D KI P
Sbjct: 273 ETYDFDVPTADTCDSYGRFLIRLEEMRQSLRIVEQCLDRL----EPGPVMVADKKIAWPA 328
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
+ M SME+LIHHFKL TEG+ VP G+ YAAVE+PKGE GV++
Sbjct: 329 QLALGPDGLGNSLDHIKKIMGTSMEALIHHFKLVTEGFRVPAGQAYAAVESPKGELGVHV 388
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +P+R R P + +LQAM +C+G Q+ADV + S+D V G VDR
Sbjct: 389 VSDGGTRPFRVHFRDPSFTNLQAMAAMCEGGQVADVIVAVASIDPVMGGVDR 440
>gi|327398402|ref|YP_004339271.1| NAD(P)H-quinone oxidoreductase subunit H [Hippea maritima DSM
10411]
gi|327181031|gb|AEA33212.1| NAD(P)H-quinone oxidoreductase subunit H [Hippea maritima DSM
10411]
Length = 398
Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats.
Identities = 182/402 (45%), Positives = 247/402 (61%), Gaps = 10/402 (2%)
Query: 1 MDK----KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETK 56
M++ K R +N GPQHPA HGVLR +++LDGE + DP +G LHRG EKL E
Sbjct: 1 MNETYQVKNEREVVLNVGPQHPATHGVLRYVVKLDGERIVDSDPQVGFLHRGIEKLAENM 60
Query: 57 TFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLL 114
T+ Q PY DRLDY+A MN AY +AVEKLLGI EIP R Q IRV+ +E+GRI SHL+
Sbjct: 61 TYQQFNPYTDRLDYLAAMNNNLAYVMAVEKLLGIDKEIPERAQYIRVIMAELGRIASHLV 120
Query: 115 NVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIG 174
+ T A+D+GA+T L+ F ERE ++ YE A G+R+ Y R GGV +D+P ++ +
Sbjct: 121 WLATHALDIGAMTVFLYCFREREYILDMYEIACGNRLTYNYIRIGGVARDLPEGFMDKLK 180
Query: 175 CWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKS 234
+ FP + + LLT NRI+ +R ++G + EDA +G +G RGSG WDLR+
Sbjct: 181 EFVKLFPKKVKEYHTLLTKNRIWLKRTKDVGYISKEDAINYGIAGPCTRGSGVDWDLRRD 240
Query: 235 QPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDP 294
PY Y EL F+IP+ GD Y RYLVRM EM +S KI+ QC+ ++ GP P
Sbjct: 241 VPYSVYPELSFEIPVYDEGDVYARYLVRMDEMVQSNKILEQCIEKI----PSGPAMIDKP 296
Query: 295 KIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYR 354
+ V + + +L+ HF +G P GEVY E PKGE G Y+ S G KPYR
Sbjct: 297 EYVWEPKERIMTHNYALMKHFVKVVKGIKAPAGEVYFGAENPKGELGFYIYSTGEGKPYR 356
Query: 355 CKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
KIR+P + ++ AM + +G +AD+ +++GSLD VFGE DR
Sbjct: 357 LKIRSPSFINISAMPKMVQGGLIADIISVIGSLDFVFGECDR 398
>gi|189218228|ref|YP_001938870.1| NADH dehydrogenase subunit D [Methylacidiphilum infernorum V4]
gi|218534415|sp|B3DXN7|NUOD_METI4 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|189185086|gb|ACD82271.1| NADH dehydrogenase subunit D [Methylacidiphilum infernorum V4]
Length = 418
Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats.
Identities = 180/392 (45%), Positives = 249/392 (63%), Gaps = 4/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ +N GP HP+ HGV +L+LELDGE++ + P +G LHRG EK+ E + Q VPY
Sbjct: 31 EGERLILNMGPSHPSTHGVFQLLLELDGEVITKAIPEVGYLHRGDEKIAENMQYNQFVPY 90
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDY+AP+ YA AVEKLLG EIP R Q+IRV+ SE+ RI SHL+ + AMD G
Sbjct: 91 TDRLDYLAPLANNVVYACAVEKLLGWEIPARAQVIRVICSEMARISSHLMGLGAYAMDCG 150
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++ L+ F EREK+ + E +G+R +Y R GG+ +D+PP E + + F +
Sbjct: 151 AVSVFLYTFTEREKIYLLIEELTGARFTTSYTRIGGLTRDLPPGWTEKLKDFIKQFLPKV 210
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
++I LLT N+IF R +IG + EDA +G +G +RGSG DLRK PY Y + D
Sbjct: 211 DEIEGLLTKNKIFVDRTQDIGIISKEDAIDYGLTGPNLRGSGVDHDLRKKNPYLGYEKYD 270
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F++P+G GDC+DRY+VR+ EMR+S +I+ Q + + GP++ +P+ PK++ +
Sbjct: 271 FEVPLGSVGDCFDRYMVRIEEMRQSCRILDQALADI----PPGPIAVDEPRGYLPKKSAV 326
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
ME LI HF + T+G VP GEVY E PKGE G Y++S GG PYR KIR+P + +
Sbjct: 327 LTKMEELIQHFIVVTQGVDVPPGEVYFGGENPKGELGFYIVSKGGGVPYRLKIRSPSFVN 386
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
L + + GH L+DV AILGSLD V GE DR
Sbjct: 387 LSILPKILPGHLLSDVVAILGSLDFVMGECDR 418
>gi|291296253|ref|YP_003507651.1| NADH dehydrogenase I, D subunit [Meiothermus ruber DSM 1279]
gi|290471212|gb|ADD28631.1| NADH dehydrogenase I, D subunit [Meiothermus ruber DSM 1279]
Length = 415
Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats.
Identities = 173/394 (43%), Positives = 257/394 (65%), Gaps = 1/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ KS T+N GPQHP+ HGVLR++++L GE + R+ PHIG LH G EK +E +T+ Q +
Sbjct: 23 ELKSEVMTLNVGPQHPSTHGVLRVVVDLSGEQILRLTPHIGYLHTGFEKNMEHRTYTQCI 82
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
Y R+DY+ + + AYAL+VEKL+G ++P R Q IRV+ +E+ RI SHL+ + T +D
Sbjct: 83 TYTPRMDYLHSFSHDLAYALSVEKLVGAQVPPRAQAIRVMLNELSRIASHLVFLGTGLLD 142
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
GALTP + F ERE ++ +E SG R H Y R GG+ +D+PPE + ++ + P+
Sbjct: 143 FGALTPFFYAFREREAVLDLFEWVSGQRFHHNYIRIGGLKEDLPPEFLGEVKKFIAQMPA 202
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+++ L + IF +R + + E A +G +R SG +D+RK+ PY Y
Sbjct: 203 RIDEYEALFRESPIFYERARGVAVIPPEVAINLSLTGGSLRASGVNYDVRKAYPYAGYET 262
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DFD+P+ GD +DR ++R++EMRESVKIIRQ V RL GP+ +P+I P R
Sbjct: 263 YDFDVPVLTGGDVFDRMVIRILEMRESVKIIRQAVERLEALGP-GPIRDPNPQISLPPRH 321
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
++ SME++I+HFKL TEG+H +GEVY E+ +GE G Y++SDGG+ PYR K+RAP +
Sbjct: 322 LLETSMEAVIYHFKLVTEGFHPALGEVYVPTESARGELGYYIVSDGGSMPYRVKVRAPSF 381
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ++ + CKG Q+AD+ ++ SLD V G+VDR
Sbjct: 382 VNLQSLPYACKGVQMADMVVVIASLDPVMGDVDR 415
>gi|256785938|ref|ZP_05524369.1| NADH dehydrogenase subunit D [Streptomyces lividans TK24]
gi|289769831|ref|ZP_06529209.1| NADH dehydrogenase (quinone), D subunit [Streptomyces lividans
TK24]
gi|289700030|gb|EFD67459.1| NADH dehydrogenase (quinone), D subunit [Streptomyces lividans
TK24]
Length = 440
Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats.
Identities = 183/412 (44%), Positives = 250/412 (60%), Gaps = 22/412 (5%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GPQHP+ HGVLRLILE+DGE V IG LH G EK +E +T+ Q
Sbjct: 33 RADDERIVVNMGPQHPSTHGVLRLILEIDGETVTEARCGIGYLHTGIEKNLEYRTWTQGT 92
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R+DY+ P E AY L VEKLLGI+ IP R +IRVL E+ R+ SHL+ + T
Sbjct: 93 TFVTRMDYLTPFFNEAAYCLGVEKLLGIDDQIPDRATIIRVLLMELNRLSSHLVAIATGG 152
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
M++GA T ++GF +RE ++ YE +G RM+ AY RPGG+ QD+PP V+ I +
Sbjct: 153 MELGATTIMIYGFRDRELILDIYELITGLRMNHAYIRPGGLAQDLPPGAVDQIREFVKKM 212
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L + L TGN IFK R ++G + L G +G ++R +G DLRK+QPY Y
Sbjct: 213 NKNLPEYDKLATGNPIFKARMQDVGYLDLAGCMALGATGPVLRSTGLPHDLRKTQPYCGY 272
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
DFD+P D Y R+L+R+ EMR+S++I+ QC++RL + GPV +D KI P
Sbjct: 273 ETYDFDVPTADTCDSYGRFLIRLEEMRQSLRIVEQCLDRL----QPGPVMVADKKIAWPA 328
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
+ M SME+LIHHFKL TEG+ VP G+VY AVE+PKGE GV++
Sbjct: 329 QLALGPDGLGNSLDHIKKIMGTSMEALIHHFKLVTEGFRVPPGQVYTAVESPKGELGVHV 388
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +P+R R P + +LQAM +C+G Q+ADV + S+D V G VDR
Sbjct: 389 VSDGGTRPFRVHFRDPSFTNLQAMAAMCEGGQVADVIVAVASIDPVMGGVDR 440
>gi|302536171|ref|ZP_07288513.1| NADH dehydrogenase (quinone), D subunit [Streptomyces sp. C]
gi|302445066|gb|EFL16882.1| NADH dehydrogenase (quinone), D subunit [Streptomyces sp. C]
Length = 441
Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats.
Identities = 179/412 (43%), Positives = 250/412 (60%), Gaps = 22/412 (5%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K +N GPQHP+ HGVLRLILE+DGE V IG LH G EK +E + + Q
Sbjct: 34 KADDERIVVNMGPQHPSTHGVLRLILEIDGETVTEARCGIGYLHTGIEKNLEFRNWTQGT 93
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R+DY+ P E AY L VEKLLGI IP R +IRVL E+ R+ SHL+ + T
Sbjct: 94 TFVTRMDYLTPFFNETAYCLGVEKLLGITDQIPDRATVIRVLLMELNRLSSHLVCIATGG 153
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
M++GA T ++GF +RE ++ +E +G RM+ A+ RPGG+ QD+PP V+ + + +
Sbjct: 154 MELGATTIMIYGFRDRELILDVFELITGLRMNHAFVRPGGLAQDLPPGAVDQLREFVKTM 213
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L + L TGN IFK R ++G + L G +G ++R +G DLRK+ PY Y
Sbjct: 214 KKNLPEYDKLATGNPIFKARMQDVGYLDLTGCMALGATGPILRSAGLPHDLRKTDPYCGY 273
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+ +FD+P + D Y R+L+R+ EMR+S++I+ QC++RL + GPV +D KI P
Sbjct: 274 EDYEFDVPTTESCDSYGRFLIRLEEMRQSLRIVEQCLDRL----EPGPVMVADKKIAWPA 329
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
+ M SME+LIHHFKL TEG+ VP G+ YAAVE+PKGE GV++
Sbjct: 330 QLAMGPDGLGNSLDHIKNIMGTSMEALIHHFKLVTEGFRVPAGQAYAAVESPKGELGVHV 389
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +PYR R P + +LQAM +C+G Q+ADV + S+D V G VDR
Sbjct: 390 VSDGGTRPYRVHFRDPSFTNLQAMAAMCEGGQVADVIVAVASIDPVMGGVDR 441
>gi|239929611|ref|ZP_04686564.1| NADH dehydrogenase subunit D [Streptomyces ghanaensis ATCC 14672]
gi|291437935|ref|ZP_06577325.1| NuoD [Streptomyces ghanaensis ATCC 14672]
gi|291340830|gb|EFE67786.1| NuoD [Streptomyces ghanaensis ATCC 14672]
Length = 436
Score = 418 bits (1076), Expect = e-115, Method: Composition-based stats.
Identities = 181/412 (43%), Positives = 248/412 (60%), Gaps = 22/412 (5%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GPQHP+ HGVLRLILE+DGE V IG LH G EK +E +T+ Q
Sbjct: 29 RTDDERIVVNMGPQHPSTHGVLRLILEIDGETVTEARCGIGYLHTGIEKNLEYRTWTQGT 88
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R+DY+ E AY L+VEKLLGIE +P R +IRVL E+ R+ SHL+ + T
Sbjct: 89 TFVTRMDYLTSFFNETAYCLSVEKLLGIEDQVPDRASIIRVLLMELNRLSSHLVCIATGG 148
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
M++GA T ++GF +RE ++ YE +G RM+ AY RPGG+ QD+PP V+ I + +
Sbjct: 149 MELGATTIMIYGFRDRELILDIYELITGLRMNHAYIRPGGLAQDLPPGAVDQIRAFVKTM 208
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L + L TGN IFK R ++G + L G +G ++R +G DLRK+QPY Y
Sbjct: 209 KKNLPEYDKLATGNPIFKARMQDVGYLDLAGCMALGATGPILRSTGLPHDLRKAQPYCGY 268
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
DF+IP D Y R+L+R+ EMR+S+ I+ QC++RL + GPV +D KI P
Sbjct: 269 ETYDFEIPTADTCDAYGRFLIRLEEMRQSLHIVEQCLDRL----QPGPVMVADKKIAWPA 324
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
+ M SME+LIHHFKL TEG+ VP G+ Y AVE+PKGE G ++
Sbjct: 325 QLALGPDGLGNSLDHIKKIMGTSMEALIHHFKLVTEGFRVPPGQAYTAVESPKGELGAHV 384
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +PYR R P + +LQAM +C+G Q+ADV + S+D V G VDR
Sbjct: 385 VSDGGTRPYRVHFRDPSFTNLQAMAAMCEGGQVADVIVAVASIDPVMGGVDR 436
>gi|307069592|ref|YP_003878069.1| putative NADH:ubiquinone oxidoreductase, chain D [Candidatus
Zinderia insecticola CARI]
gi|306482852|gb|ADM89723.1| putative NADH:ubiquinone oxidoreductase, chain D [Candidatus
Zinderia insecticola CARI]
Length = 407
Score = 418 bits (1076), Expect = e-115, Method: Composition-based stats.
Identities = 207/408 (50%), Positives = 289/408 (70%), Gaps = 17/408 (4%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
KK +++ +NFGPQHP+AHGVLRLILEL+GE + +PHIG LHRGTEKLIE K + Q++P
Sbjct: 2 KKFKNYLLNFGPQHPSAHGVLRLILELNGEKIINAEPHIGYLHRGTEKLIENKNYFQSIP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDY++ M EHAY LA+EKLL I++PIR + IRV++ EI RIL+HL+ + T A+D+
Sbjct: 62 YMDRLDYISIMCNEHAYILALEKLLKIKVPIRAKYIRVMFDEITRILNHLMWLGTHALDI 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE------------ 171
G++ L+ F+ERE LM YE SG+R+H+ Y+RPGGV+ D+P ++
Sbjct: 122 GSMGIFLYTFKEREYLMDCYEAVSGARLHSNYYRPGGVNNDLPNKMPNNKKYKNDFRSKD 181
Query: 172 ---DIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAA 228
I + + FP +N+ +LLT N+I+KQR NIG V + A GF+G M+R SG +
Sbjct: 182 FLYFIENFVNYFPKCINEYENLLTDNKIWKQRLKNIGIVNSDKAISMGFTGPMLRASGVS 241
Query: 229 WDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGP 288
WDLRK +PYE Y++L F IPIGK+GDCYDRYL+R+ EM++S KII+QC+ L K G
Sbjct: 242 WDLRKEKPYEVYNKLKFKIPIGKNGDCYDRYLIRIEEMKQSNKIIKQCIKWL--KVNPGI 299
Query: 289 VSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG 348
+ ++ K +++K +ME +IHHFK +TEG+ + E+Y A+E PKGEFGVY++SD
Sbjct: 300 ILNNNYKFTQCLNSNIKTNMEEMIHHFKFFTEGFKIKNNEIYKAIEHPKGEFGVYILSDN 359
Query: 349 GNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
NKPYR +IR+P +AHLQ+ ++ K H L+D I+G+ DIVFGE+DR
Sbjct: 360 SNKPYRLRIRSPSFAHLQSFNYMVKNHYLSDAITIIGTQDIVFGEIDR 407
>gi|218509668|ref|ZP_03507546.1| NADH dehydrogenase subunit D [Rhizobium etli Brasil 5]
Length = 379
Score = 418 bits (1076), Expect = e-115, Method: Composition-based stats.
Identities = 306/367 (83%), Positives = 336/367 (91%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ +R +N GPQHP+ HGVLRL+LELDGE VERVDPHIGLLHRGTEKLIETKT+LQA
Sbjct: 13 EALNTREVLLNLGPQHPSTHGVLRLVLELDGEFVERVDPHIGLLHRGTEKLIETKTYLQA 72
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
VPYFDRLDYVAPMNQEHAYALAVE+LLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM
Sbjct: 73 VPYFDRLDYVAPMNQEHAYALAVERLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 132
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
DVGALTPPLWGFEEREKLMVFYERASGSRMHAAY RPGGVHQD+P +LV+DIG WCD F
Sbjct: 133 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYVRPGGVHQDLPEKLVQDIGDWCDPFL 192
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
AL+DI +LLTGNRIFKQRNV+IG V LED W WGFSGVM+RGSGAAWDLR++QPYECYS
Sbjct: 193 KALDDIDNLLTGNRIFKQRNVDIGVVSLEDCWAWGFSGVMVRGSGAAWDLRRAQPYECYS 252
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+L+FDIPIGK+GD YDRYL+RM+EMR+SV+I++QCVNRLL K GP S+ D K+VPPKR
Sbjct: 253 DLEFDIPIGKNGDNYDRYLIRMIEMRQSVRIMKQCVNRLLSDAKTGPFSSIDGKVVPPKR 312
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+MKRSME+LIHHFKLYTEGYHVP GEVYAAVEAPKGEFGVYL+SDG NKPYRCKIRAPG
Sbjct: 313 GEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYLVSDGSNKPYRCKIRAPG 372
Query: 362 YAHLQAM 368
YAHLQAM
Sbjct: 373 YAHLQAM 379
>gi|297201626|ref|ZP_06919023.1| NADH dehydrogenase (quinone), D subunit [Streptomyces sviceus ATCC
29083]
gi|197711003|gb|EDY55037.1| NADH dehydrogenase (quinone), D subunit [Streptomyces sviceus ATCC
29083]
Length = 440
Score = 418 bits (1074), Expect = e-115, Method: Composition-based stats.
Identities = 187/412 (45%), Positives = 248/412 (60%), Gaps = 22/412 (5%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K +N GPQHP+ HGVLRLILE+DGE V IG LH G EK +E +T+ Q
Sbjct: 33 KADDERIVVNMGPQHPSTHGVLRLILEIDGETVTEARCGIGYLHTGIEKNLEFRTWTQGT 92
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R+DY+ E AY LAVEKLLGIE I R LIRVL E+ R+ SHL+ + T
Sbjct: 93 TFVTRMDYLTSFFNETAYCLAVEKLLGIEDQITDRATLIRVLLMELNRLSSHLVCIATGG 152
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
M++GA T ++GF +RE ++ YE +G RM+ AY RPGG+ QD+PP V+ I +
Sbjct: 153 MELGATTIMIYGFRDREMILDIYELITGLRMNHAYIRPGGLAQDLPPGAVDHIREFVKKM 212
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L + L TGN IFK R ++G + L G +G ++R +G DLRK+QPY Y
Sbjct: 213 KKNLPEYDKLATGNPIFKARMQDVGYLDLAGCMALGATGPILRSTGLPHDLRKAQPYCGY 272
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
DFDIP D Y R+L+R+ EMR+S++II QC++RL + GPV +D KI P
Sbjct: 273 ETFDFDIPTADTCDSYGRFLIRLEEMRQSLRIIEQCLDRL----QPGPVMVADKKIAWPA 328
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
+ M SME+LIHHFKL TEG+ VP G+ YAAVE+PKGE GV+
Sbjct: 329 QLALGPDGLGNSLDHIKKIMGTSMEALIHHFKLVTEGFRVPPGQAYAAVESPKGELGVHA 388
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +P+R R P + +LQAM +C+G Q+ADV + S+D V G VDR
Sbjct: 389 VSDGGTRPFRVHFRDPSFTNLQAMAAMCEGGQVADVIVAVASIDPVMGGVDR 440
>gi|300782454|ref|YP_003762745.1| NADH dehydrogenase I subunit D [Amycolatopsis mediterranei U32]
gi|299791968|gb|ADJ42343.1| NADH dehydrogenase I subunit D [Amycolatopsis mediterranei U32]
Length = 460
Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats.
Identities = 178/411 (43%), Positives = 250/411 (60%), Gaps = 20/411 (4%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
D IN GPQHP+ HGVLRL+LE++GE V ++ IG LH G EK E +T+ Q
Sbjct: 54 DAAHDERMVINMGPQHPSTHGVLRLVLEMEGETVTQLRSVIGYLHTGIEKNCEYRTWTQG 113
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
V + R+DY+AP++ E AY L VEKLL IE P R QL+RV+ EI RI SHL+ + T M
Sbjct: 114 VTFVTRMDYLAPLSTEMAYCLGVEKLLQIEAPRRAQLLRVMLLEINRIGSHLVYIATGGM 173
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
++GA T GF ERE+++ E +G RM+ A+ RPGG+ QD+P + E + + +
Sbjct: 174 ELGATTAMTLGFREREEVLHLLEHLTGLRMNHAFIRPGGLAQDMPADYREKVTEFIKTMK 233
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
L L TG I++ R +G + ++ G +G ++R +G WDLRK++PY CY
Sbjct: 234 KRLPLYDKLFTGQPIWRNRLKGVGYLPVDACLALGVTGPVLRSAGLPWDLRKTEPYSCYD 293
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK- 300
E DFD+P+ DC+ RYL+R+ EM ES+KII QC+ +L + GPV D K+ P
Sbjct: 294 EFDFDVPVDNGADCWSRYLIRVHEMHESLKIIEQCLEKL----EPGPVMVEDKKVAWPAQ 349
Query: 301 ---------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLI 345
+ M +SMESLIHHFKL TEG+ VP G+VY +VE+P+GE +L+
Sbjct: 350 LSIGSDGMGNSLEHVKKIMGQSMESLIHHFKLVTEGFKVPPGQVYTSVESPRGELSAHLV 409
Query: 346 SDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
SDGG +P R +R P + +LQ+M + +G +ADV A + S+D V G VDR
Sbjct: 410 SDGGTRPLRVHVREPSFVNLQSMPAMAEGGLVADVIAAIASIDPVMGGVDR 460
>gi|182436774|ref|YP_001824493.1| NADH dehydrogenase subunit D [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326777369|ref|ZP_08236634.1| NAD(P)H-quinone oxidoreductase subunit H [Streptomyces cf. griseus
XylebKG-1]
gi|218534364|sp|B1W516|NUOD1_STRGG RecName: Full=NADH-quinone oxidoreductase subunit D 1; AltName:
Full=NADH dehydrogenase I subunit D 1; AltName:
Full=NDH-1 subunit D 1
gi|178465290|dbj|BAG19810.1| putative NADH dehydrogenase chain D [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326657702|gb|EGE42548.1| NAD(P)H-quinone oxidoreductase subunit H [Streptomyces cf. griseus
XylebKG-1]
Length = 440
Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats.
Identities = 182/412 (44%), Positives = 249/412 (60%), Gaps = 22/412 (5%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K +N GPQHP+ HGVLRLILE+DGE V IG LH G EK +E + + Q
Sbjct: 33 KSDDERIIVNMGPQHPSTHGVLRLILEIDGETVTEARCGIGYLHTGIEKNLEFRNWTQGT 92
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R+DY+ P E AY L VEKLLGIE IP R ++RVL E+ R+ SHL+ + T
Sbjct: 93 TFVTRMDYLTPFFNETAYCLGVEKLLGIEDQIPDRATVLRVLLMELNRLSSHLVCIATGG 152
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
M++GA T ++GF +RE ++ +E +G RM+ A+ RPGG+ QD+PP V+ + + +
Sbjct: 153 MELGATTIMIYGFRDRELVLDLFELFTGLRMNHAFVRPGGLAQDLPPGAVDRLREFIKTM 212
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L + L TGN IFK R ++G + L G +G ++R +G DLRKS PY Y
Sbjct: 213 KKNLPEYDKLATGNPIFKARMQDVGYLDLTGCMALGATGPVLRSAGLPHDLRKSDPYCGY 272
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
DF++P D Y R+L+R+ EMR+S++II QC++RL + GPV +D KI P
Sbjct: 273 ETYDFEVPTADTCDSYGRFLIRLEEMRQSLRIIEQCIDRL----EPGPVMVADKKIAWPA 328
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
R M SME+LIHHFKL TEG+ VP G+VY AVE+PKGE GV++
Sbjct: 329 QLALGPDGLGNSLDHIRNIMGTSMEALIHHFKLVTEGFRVPPGQVYTAVESPKGELGVHV 388
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +PYR R P + +LQAM +C+G Q+ADV + S+D V G VDR
Sbjct: 389 VSDGGTRPYRVHFRDPSFTNLQAMAAMCEGGQVADVIVAVASIDPVMGGVDR 440
>gi|15806515|ref|NP_295226.1| NADH dehydrogenase I subunit D [Deinococcus radiodurans R1]
gi|11134138|sp|Q9RU89|NUOD_DEIRA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|6459264|gb|AAF11069.1|AE001994_5 NADH dehydrogenase I, D subunit [Deinococcus radiodurans R1]
Length = 401
Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats.
Identities = 168/392 (42%), Positives = 243/392 (61%), Gaps = 4/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ ++N GPQHP+ HGVLRL++++DGE V RV+PH+G LH G EK +E +T+ Q V Y
Sbjct: 14 HTELMSLNVGPQHPSTHGVLRLVVDMDGEYVTRVEPHMGYLHTGFEKTMEHRTYQQNVTY 73
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
R DY+ + E AY L+VEKLLG E+P R ++RV+ E+GRI SHL+ V T +D+G
Sbjct: 74 APRTDYLHSFSHELAYVLSVEKLLGAEVPERANVVRVILHELGRIHSHLVFVGTGLLDLG 133
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
ALTP + F E+E +E G RM+ YFR GG+ +D+P + + + +
Sbjct: 134 ALTPFFYAFREKEACQDLFEAVCGYRMNQGYFRVGGLARDLPEGWTARVEAFLNQMERGV 193
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ + L N IF R +G + + A G +G +R SG D RK PY + + D
Sbjct: 194 EEYTTLFAANPIFLDRAKGVGVIPADAALDLGLTGPNLRASGVPLDNRKDHPYCGFEDYD 253
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F++ GD R+ +R++E ES+KIIRQ + +L GP+ + KI P R ++
Sbjct: 254 FNVISSPDGDSLARFNMRLLEFSESIKIIRQGLQKLR----PGPIKDPNRKISLPPRHEL 309
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
+ SME++IHHFKL TEG+H P+GE Y +E+ +GE G Y+ISDGG+ PYR KIRAP + +
Sbjct: 310 ETSMEAVIHHFKLVTEGFHPPLGEAYVPIESARGEVGYYVISDGGSMPYRVKIRAPSFVN 369
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
LQA+E+ C G Q AD+ IL ++D V G+VDR
Sbjct: 370 LQALEYACVGVQFADLITILATIDPVLGDVDR 401
>gi|254391140|ref|ZP_05006347.1| NADH dehydrogenase subunit D [Streptomyces clavuligerus ATCC 27064]
gi|197704834|gb|EDY50646.1| NADH dehydrogenase subunit D [Streptomyces clavuligerus ATCC 27064]
Length = 448
Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats.
Identities = 181/412 (43%), Positives = 245/412 (59%), Gaps = 22/412 (5%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GPQHP+ HGVLRLILE+DGE V IG LH G EK +E + + Q
Sbjct: 41 RADDERIVVNMGPQHPSTHGVLRLILEIDGETVTEARCGIGYLHTGIEKNLEFRNWTQGT 100
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R+DY+ P E AY LAVEKLLGIE IP R +IRVL E+ R+ SHL+ + T
Sbjct: 101 TFVTRMDYLTPFFNEAAYCLAVEKLLGIEDQIPDRASVIRVLLMELNRLSSHLVCIATGG 160
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
M++GA T ++GF +RE ++ YE +G RM+ AY RPGG+ QD+P V+ + + +
Sbjct: 161 MELGATTIMIYGFRDRELILDLYELITGLRMNHAYIRPGGLAQDLPAGAVDRLREFVKTM 220
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L + L TGN IFK R IG + L G +G ++R +G DLRK+ PY Y
Sbjct: 221 KKNLPEYDKLATGNPIFKARMQGIGHLDLTGCMALGATGPILRAAGLPHDLRKTDPYCGY 280
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
DF++P D Y R+L+R+ EMR+S++I+ QCV RL GPV +D KI P
Sbjct: 281 ETYDFEVPTADTCDSYGRFLIRLEEMRQSLRIVEQCVERLA----PGPVMVADKKIAWPA 336
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
+ M SME+LIHHFKL TEG+ VP G+ YAAVE+PKGE G ++
Sbjct: 337 QLALGPDGLGNSLDHIKKIMGTSMEALIHHFKLVTEGFRVPAGQAYAAVESPKGELGAHV 396
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +PYR R P + +LQ+M +C+G Q+ADV + S+D V G VDR
Sbjct: 397 VSDGGTRPYRVHFRDPSFTNLQSMAAMCEGGQVADVIVAVASIDPVMGGVDR 448
>gi|21222948|ref|NP_628727.1| NADH dehydrogenase subunit D [Streptomyces coelicolor A3(2)]
gi|81789728|sp|Q9XAQ7|NUOD2_STRCO RecName: Full=NADH-quinone oxidoreductase subunit D 2; AltName:
Full=NADH dehydrogenase I subunit D 2; AltName:
Full=NDH-1 subunit D 2
gi|5042274|emb|CAB44528.1| NuoD, NADH dehydrogenase subunit [Streptomyces coelicolor A3(2)]
Length = 440
Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats.
Identities = 182/412 (44%), Positives = 249/412 (60%), Gaps = 22/412 (5%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GPQHP+ HGVLRLILE+DGE V IG LH G EK +E +T+ Q
Sbjct: 33 RADDERIVVNMGPQHPSTHGVLRLILEIDGETVTEARCGIGYLHTGIEKNLEYRTWTQGT 92
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R+DY+ P E AY L VEKLLGI+ IP R +IRVL E+ R+ SHL+ + T
Sbjct: 93 TFVTRMDYLTPFFNEAAYCLGVEKLLGIDDQIPDRATIIRVLLMELNRLSSHLVAIATGG 152
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
M++GA T ++GF +RE ++ YE +G RM+ AY RPGG+ QD+PP V+ I +
Sbjct: 153 MELGATTIMIYGFRDRELILDIYELITGLRMNHAYIRPGGLAQDLPPGAVDQIREFVKKM 212
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L + L TGN IFK R ++G + L G +G ++R +G DLRK+QPY Y
Sbjct: 213 NKNLPEYDKLATGNPIFKARMQDVGYLDLAGCMALGATGPVLRSTGLPHDLRKTQPYCGY 272
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
DFD+P D Y R+L+R+ EMR+S++I+ QC++RL + GPV +D KI P
Sbjct: 273 ETYDFDVPTADTCDSYGRFLIRLEEMRQSLRIVEQCLDRL----QPGPVMVADKKIAWPA 328
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
+ M SME+LIHHFKL TEG+ VP +VY AVE+PKGE GV++
Sbjct: 329 QLALGPDGLGNSLDHIKKIMGTSMEALIHHFKLVTEGFRVPPAQVYTAVESPKGELGVHV 388
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +P+R R P + +LQAM +C+G Q+ADV + S+D V G VDR
Sbjct: 389 VSDGGTRPFRVHFRDPSFTNLQAMAAMCEGGQVADVIVAVASIDPVMGGVDR 440
>gi|182412307|ref|YP_001817373.1| NADH dehydrogenase I, D subunit [Opitutus terrae PB90-1]
gi|229891261|sp|B1ZRT0|NUOD1_OPITP RecName: Full=NADH-quinone oxidoreductase subunit D 1; AltName:
Full=NADH dehydrogenase I subunit D 1; AltName:
Full=NDH-1 subunit D 1
gi|177839521|gb|ACB73773.1| NADH dehydrogenase I, D subunit [Opitutus terrae PB90-1]
Length = 426
Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats.
Identities = 185/394 (46%), Positives = 249/394 (63%), Gaps = 3/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +++ GP HP+ HGVLR+ +EL+GEI+ + DP IG LHRG EK+ E T+ Q V
Sbjct: 36 EFSGDRMSLSMGPSHPSTHGVLRIQMELEGEILTKADPIIGYLHRGDEKIAENMTYNQFV 95
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DRLDY+AP+ AY +AVEKL G+ +P R Q IRV+ +E+ RI SHL+ + +D
Sbjct: 96 PYTDRLDYLAPLANNMAYVIAVEKLAGLTVPPRCQAIRVITAELARISSHLMGLGAFGLD 155
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA T + +RE L +E +G+R +Y R GGV +D+PP +E++G +CD F
Sbjct: 156 VGAWTVLVLSLNQREFLYNLFEDLTGARFTTSYTRIGGVTRDVPPGWLENVGTFCDKFLP 215
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
AL +I LLT N+IF R V +G + EDA +G +G RGSG A DLRK +PY Y +
Sbjct: 216 ALEEILSLLTRNKIFLDRTVGVGVISKEDAIAYGITGPNARGSGIATDLRKDRPYSGYEQ 275
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+FD+P+G GDCYDRYLVR EMR+SV+IIRQ + G + + K+ P +
Sbjct: 276 YEFDVPVGTKGDCYDRYLVRGEEMRQSVRIIRQVIKNFPGGDW---YATEAKKVFLPPKG 332
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ SME LI F L TEG +P GEVY E PKG G Y++S GG PYR KIR+P +
Sbjct: 333 KVLSSMEELIQQFMLVTEGPQMPAGEVYFEAENPKGILGFYIVSKGGGVPYRLKIRSPSF 392
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L + LC+G ++DV AILGSLD V GE DR
Sbjct: 393 CNLSLVPKLCQGVLISDVVAILGSLDFVMGECDR 426
>gi|254445486|ref|ZP_05058962.1| NADH dehydrogenase (quinone), D subunit [Verrucomicrobiae bacterium
DG1235]
gi|198259794|gb|EDY84102.1| NADH dehydrogenase (quinone), D subunit [Verrucomicrobiae bacterium
DG1235]
Length = 413
Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats.
Identities = 188/396 (47%), Positives = 252/396 (63%), Gaps = 5/396 (1%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
++ ++ ++ GP HP+ HGVLRL LELDGEI+++ DP +G LHRG EK+ E T+ Q
Sbjct: 22 EEFETEKLELSMGPSHPSTHGVLRLNLELDGEIIQKCDPVLGYLHRGDEKIAENMTYNQF 81
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
VPY DRLDY+AP+ YA+AVEKL GIE+P R Q IRVL SE+ RI SHLL + M
Sbjct: 82 VPYTDRLDYLAPLANNAIYAIAVEKLTGIEVPERCQAIRVLTSEMARISSHLLGLGAYTM 141
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
DVGALT + F ERE L +E +G+R +Y R GGV +D+P ++ + +CD F
Sbjct: 142 DVGALTVFMITFTERENLYTLFEELTGARFTTSYSRIGGVTRDMPDGWMDRVLGFCDHFL 201
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
L+D+ LL+ NR+F R +IG + EDA +G +G R SG DLR+ PY Y
Sbjct: 202 PLLDDVESLLSRNRVFVDRTADIGIISKEDAIAYGLTGPNARASGLDLDLRRDAPYSGYE 261
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDP-KIVPPK 300
+ DF++ +G++GDCYDRYLVRM EMR+SV+IIRQ + ++ GP A D KI+ P
Sbjct: 262 KYDFEVALGENGDCYDRYLVRMEEMRQSVRIIRQVIAQM----PEGPYRAEDAKKIILPH 317
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ SME LI +F + TEG +P GEVY EAPKG G ++ S GG PYR KIR P
Sbjct: 318 KDKTLTSMEELIQNFMITTEGPQIPAGEVYFEGEAPKGALGFFIHSKGGGVPYRMKIRGP 377
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +L + LC G ++D+ +ILGS D V GE DR
Sbjct: 378 SFCNLSILPKLCVGVMVSDIPSILGSFDFVMGECDR 413
>gi|291298801|ref|YP_003510079.1| NADH dehydrogenase I, D subunit [Stackebrandtia nassauensis DSM
44728]
gi|290568021|gb|ADD40986.1| NADH dehydrogenase I, D subunit [Stackebrandtia nassauensis DSM
44728]
Length = 444
Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats.
Identities = 184/411 (44%), Positives = 249/411 (60%), Gaps = 20/411 (4%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
D +N GPQHP+ HGVLRL++E++GE V + P IG LH G EK E +T+ Q
Sbjct: 38 DPVSDERLVVNMGPQHPSTHGVLRLVVEMEGETVRELRPVIGYLHTGIEKNTEYRTWTQG 97
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+ R DY+AP+ E AY LAVEKLLGIE P R IRV+ E+ RI SHL+ + T M
Sbjct: 98 TTFVTRADYLAPIFNETAYCLAVEKLLGIEPPQRATTIRVIMMELNRIASHLVGLATTGM 157
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
++GAL+ ++GF ERE ++ +E SG RM+ AY RPGGV QD+P E V I + P
Sbjct: 158 ELGALSMMIYGFREREYILDIFEAVSGLRMNMAYVRPGGVAQDMPDEAVTKIRDFLKYMP 217
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+ND LL+GN I+++R +I + + G +G ++R +G WDLRK+ PY Y
Sbjct: 218 GCINDYEKLLSGNPIWQERTQDIAYLDVSGCLAMGVTGPVLRAAGLPWDLRKTMPYCGYE 277
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK- 300
+ DF++ D + RYLVR+ EMR+S++I+ Q + RL + GPV D KI P
Sbjct: 278 DYDFEVATHTGADVWGRYLVRLEEMRQSLRIVEQALERL----EPGPVMVEDKKIAWPAQ 333
Query: 301 ---------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLI 345
R M +SMESLIHHFKL TEG+ VP G+VY +EAP+GE G++L+
Sbjct: 334 LSLGGDGMGNSLAHVRKIMGQSMESLIHHFKLVTEGFRVPPGQVYVPIEAPRGELGIHLV 393
Query: 346 SDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
SDGG +PYR +R P + +LQA+ L +G LADV A SLD V G DR
Sbjct: 394 SDGGTRPYRMHMREPSFVNLQAVPALAEGGLLADVIAGGASLDPVMGGCDR 444
>gi|294630799|ref|ZP_06709359.1| NADH dehydrogenase, D subunit [Streptomyces sp. e14]
gi|292834132|gb|EFF92481.1| NADH dehydrogenase, D subunit [Streptomyces sp. e14]
Length = 440
Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats.
Identities = 180/412 (43%), Positives = 247/412 (59%), Gaps = 22/412 (5%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GPQHP+ HGVLRLILE++GE V IG LH G EK +E +T+ Q
Sbjct: 33 RADDERIVVNMGPQHPSTHGVLRLILEIEGETVTEARCGIGYLHTGIEKNLEFRTWTQGT 92
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R+DY+ E AY LAVEKLLGIE I R ++IRVL E+ R+ SHL+ + T
Sbjct: 93 TFVTRMDYLTSFFNETAYCLAVEKLLGIEDQITERAKIIRVLLMELNRLSSHLVCIATGG 152
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
M++GA T ++GF +RE ++ YE +G RM+ AY RPGG+ QD+PP V+ I +
Sbjct: 153 MELGATTIMIYGFRDREMILDIYELVTGLRMNHAYIRPGGLAQDLPPGAVDQIREFVKKM 212
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L + L TGN IFK R ++G + L G +G ++R +G DLRK+QPY Y
Sbjct: 213 RKNLPEYDKLATGNPIFKARMQDVGYLDLAGCMALGATGPILRSTGLPHDLRKTQPYCDY 272
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
DFD+P D Y R+L+R+ EM +S++I+ QC++RL + GPV +D KI P
Sbjct: 273 ETYDFDVPTADTCDAYGRFLIRLEEMHQSLRIVEQCLDRL----QPGPVMVADKKIAWPA 328
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
+ M SME+LIHHFKL TEG+ VP G+ Y AVE+PKGE GV+
Sbjct: 329 QLALGPDGLGNSLDHIKKIMGTSMEALIHHFKLVTEGFRVPPGQAYTAVESPKGELGVHA 388
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +P+R R P + +LQAM +C+G Q+ADV + S+D V G VDR
Sbjct: 389 VSDGGTRPFRVHFRDPSFTNLQAMAAMCEGGQVADVIVAVASIDPVMGGVDR 440
>gi|134103327|ref|YP_001108988.1| NADH dehydrogenase subunit D [Saccharopolyspora erythraea NRRL
2338]
gi|218534463|sp|A4FPT8|NUOD_SACEN RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|133915950|emb|CAM06063.1| NADH dehydrogenase I chain D [Saccharopolyspora erythraea NRRL
2338]
Length = 449
Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats.
Identities = 183/411 (44%), Positives = 255/411 (62%), Gaps = 20/411 (4%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ INFGPQHP+AHGVLRL+ EL+GE + + IG LH G EK +E +T+ Q
Sbjct: 43 ESAGEERIVINFGPQHPSAHGVLRLVFELEGETIVKARSVIGYLHTGIEKNVEYRTWTQG 102
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
V + R+DY+AP++ E AY +AVEKLLG+E P R Q RV+ E+ RI SHL+ + T AM
Sbjct: 103 VTFVTRMDYLAPLHNETAYCMAVEKLLGVEAPPRAQTFRVMLMELSRIASHLVFLATGAM 162
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
++GA T +GF ERE+++ E +G RM+ A+ RPGGV QD+P + + + +
Sbjct: 163 EMGATTGMTFGFREREEVLHLLEYLTGLRMNHAFVRPGGVAQDLPEDYRQKVLDFIKVMD 222
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
S L L TG I+KQR ++G + L+ G +G ++R +G AWDLRK QPY Y
Sbjct: 223 SRLPSYDKLFTGQPIWKQRLKDVGYLPLDGCMQLGVTGPVLRSAGLAWDLRKVQPYCGYE 282
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK- 300
+ +F++P DCY RYL+R+ EM +S+KIIRQC++++ + GPV SD KI P
Sbjct: 283 DYEFEVPTSTGADCYARYLLRLEEMHQSLKIIRQCLDKM----EPGPVMVSDAKIAWPAK 338
Query: 301 ---------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLI 345
R M +SMESLIHHFKL TEG+ VP G+VY VE+P+GE G +++
Sbjct: 339 LTIGPDGMGNSLEHVRKIMGQSMESLIHHFKLVTEGFDVPPGQVYVPVESPRGELGYHVV 398
Query: 346 SDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
SDGG +P R +R P + +LQA+ + +G +AD A L SLD V G VDR
Sbjct: 399 SDGGTRPMRVHVREPSFVNLQALPAMVEGGLMADAIASLASLDPVMGGVDR 449
>gi|323649875|ref|YP_004237249.1| NADH dehydrogenase subunit 7 [Ricinus communis]
gi|322394255|gb|ADW96012.1| NADH dehydrogenase subunit 7 [Ricinus communis]
Length = 394
Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats.
Identities = 238/392 (60%), Positives = 297/392 (75%), Gaps = 4/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ ++FT NFGPQHPAAHGV R +LE++GE+VER +PHIGLLHRGTEKLIE KT+LQA+PY
Sbjct: 7 QIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQALPY 66
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR DYV+ M QEHAY+ AVE+LL E+P+R Q IRVL+ EI RIL+H L +TT AMDVG
Sbjct: 67 SDRSDYVSTMAQEHAYSSAVERLLNCEVPLRAQYIRVLFREITRILNHSLALTTHAMDVG 126
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A TP LW FEEREKL+ FYER SG+RMHA++ RPGGV QD+P L DI F S +
Sbjct: 127 APTPFLWAFEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCRDIDSSTQQFASRI 186
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+++ ++ TGNRI+KQR V+IGTV + A WGFSGVM+RG G WDLRK+ PY+ + +LD
Sbjct: 187 DELEEMSTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGPGVCWDLRKAAPYDVHDQLD 246
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
D+P+G GD YDRY +R+ EMR+SV+II QC+N++ G + A D K+ PP R M
Sbjct: 247 PDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQCLNKM----PSGMIKADDRKLCPPSRCRM 302
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K SMES IHHF+LYTEG+ VP Y AVEAPKGEFGV+L+S+G N+PYR KIRAPG AH
Sbjct: 303 KLSMESSIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGSAH 362
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Q ++ + K H ADV I+G+ DIVFGEVDR
Sbjct: 363 SQGLDSMSKHHMPADVVTIIGTQDIVFGEVDR 394
>gi|86359329|ref|YP_471221.1| NADH-ubiquinone oxidoreductase chain D protein [Rhizobium etli CFN
42]
gi|123510664|sp|Q2K3U2|NUOD2_RHIEC RecName: Full=NADH-quinone oxidoreductase subunit D 2; AltName:
Full=NADH dehydrogenase I subunit D 2; AltName:
Full=NDH-1 subunit D 2
gi|86283431|gb|ABC92494.1| NADH-ubiquinone oxidoreductase chain D protein [Rhizobium etli CFN
42]
Length = 404
Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats.
Identities = 196/395 (49%), Positives = 253/395 (64%), Gaps = 5/395 (1%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ +R +N GPQHP+ HGVLRL+LELDGE VERVDPHIG LHRGTEKL E+ T+ Q
Sbjct: 13 EALNTREVLLNLGPQHPSTHGVLRLVLELDGEFVERVDPHIGYLHRGTEKLAESFTYTQI 72
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
P DRLDY+ P + A+ALAVEKLLGIE PIR Q IRV+ +E+ RI HLL M
Sbjct: 73 FPLTDRLDYLCPPSNNLAFALAVEKLLGIEAPIRAQYIRVMMAELARISGHLLITGALPM 132
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D+GA+T L+ ERE +M E +G+RMH ++ R GGV +D+P I +CD FP
Sbjct: 133 DLGAMTALLYVMREREMIMDLLEMITGARMHTSFCRVGGVREDLPDGFFPKIREFCDIFP 192
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+ + D LL NR+F R IG + EDA G SG +R SG WD+R+ +PYE Y
Sbjct: 193 NRIRDYERLLEDNRVFLNRTKGIGVISAEDAVDLGLSGPNLRASGVDWDIRRDEPYEIYD 252
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK- 300
LDF++ GDCY R+ R+ EMRES++II QC++++ GP P I P
Sbjct: 253 RLDFNVITRDEGDCYARWRCRVDEMRESMRIIEQCIDQM----PEGPFQIDMPTIAFPLD 308
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ + SME+LI HF L G+ VP GEVY+A+EAPKGE G Y+ISDG KP+R K+RAP
Sbjct: 309 KDRVHCSMEALIQHFDLSAYGFKVPKGEVYSAIEAPKGELGFYIISDGSPKPFRMKVRAP 368
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ +LQA+ + LAD+ A+LGSLD V EVD
Sbjct: 369 SFVNLQALFGVTNARYLADMIAVLGSLDPVMAEVD 403
>gi|294814397|ref|ZP_06773040.1| NADH-quinone oxidoreductase subunit D [Streptomyces clavuligerus
ATCC 27064]
gi|326442787|ref|ZP_08217521.1| NADH dehydrogenase subunit D [Streptomyces clavuligerus ATCC 27064]
gi|294326996|gb|EFG08639.1| NADH-quinone oxidoreductase subunit D [Streptomyces clavuligerus
ATCC 27064]
Length = 461
Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats.
Identities = 181/412 (43%), Positives = 245/412 (59%), Gaps = 22/412 (5%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GPQHP+ HGVLRLILE+DGE V IG LH G EK +E + + Q
Sbjct: 54 RADDERIVVNMGPQHPSTHGVLRLILEIDGETVTEARCGIGYLHTGIEKNLEFRNWTQGT 113
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R+DY+ P E AY LAVEKLLGIE IP R +IRVL E+ R+ SHL+ + T
Sbjct: 114 TFVTRMDYLTPFFNEAAYCLAVEKLLGIEDQIPDRASVIRVLLMELNRLSSHLVCIATGG 173
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
M++GA T ++GF +RE ++ YE +G RM+ AY RPGG+ QD+P V+ + + +
Sbjct: 174 MELGATTIMIYGFRDRELILDLYELITGLRMNHAYIRPGGLAQDLPAGAVDRLREFVKTM 233
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L + L TGN IFK R IG + L G +G ++R +G DLRK+ PY Y
Sbjct: 234 KKNLPEYDKLATGNPIFKARMQGIGHLDLTGCMALGATGPILRAAGLPHDLRKTDPYCGY 293
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
DF++P D Y R+L+R+ EMR+S++I+ QCV RL GPV +D KI P
Sbjct: 294 ETYDFEVPTADTCDSYGRFLIRLEEMRQSLRIVEQCVERLA----PGPVMVADKKIAWPA 349
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
+ M SME+LIHHFKL TEG+ VP G+ YAAVE+PKGE G ++
Sbjct: 350 QLALGPDGLGNSLDHIKKIMGTSMEALIHHFKLVTEGFRVPAGQAYAAVESPKGELGAHV 409
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +PYR R P + +LQ+M +C+G Q+ADV + S+D V G VDR
Sbjct: 410 VSDGGTRPYRVHFRDPSFTNLQSMAAMCEGGQVADVIVAVASIDPVMGGVDR 461
>gi|195037999|ref|XP_001990448.1| GH18233 [Drosophila grimshawi]
gi|193894644|gb|EDV93510.1| GH18233 [Drosophila grimshawi]
Length = 529
Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats.
Identities = 226/390 (57%), Positives = 283/390 (72%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
R+ +NFGP HPAAHGVLR+ILELD E V DPHIGLLHRGTEKLIE KT+ QA+PYFD
Sbjct: 144 RTKFVNFGPAHPAAHGVLRMILELDNETVLSADPHIGLLHRGTEKLIEYKTYTQALPYFD 203
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYV+ M E AYALAVEKLL IEIP R + IR L +E+ R+ +H + V T +D GA+
Sbjct: 204 RLDYVSCMACEQAYALAVEKLLNIEIPARAKYIRTLCAELMRLTNHTMAVATSVLDCGAI 263
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP W FEEREKL F ER SG+R+HAAY RPGGV QD+P D+ + + F L++
Sbjct: 264 TPLFWLFEEREKLYEFSERLSGARLHAAYIRPGGVAQDMPLGFGHDLYNFIEQFKERLDE 323
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ D++T NRI++ RN+ IGT+ DA +G +G ++R +G WDLRK QPY+ Y+++DFD
Sbjct: 324 VEDVVTDNRIWRMRNIGIGTISAHDALNFGCTGPVLRATGVKWDLRKQQPYDAYADMDFD 383
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ IG GDCYDRYLVR+ EMRES +II+QC+N + G V D KI+PP+R MK
Sbjct: 384 VVIGSQGDCYDRYLVRVREMRESCRIIQQCLNCMPA----GHVKVDDKKIMPPQRHKMKT 439
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
ME LIHHFK +++GY VP G Y A+E+PKGEFGVYL+SDG ++PYRCKIR YAHL
Sbjct: 440 GMEDLIHHFKHFSQGYSVPPGATYTAIESPKGEFGVYLVSDGSSRPYRCKIRPASYAHLA 499
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
M L LAD+ AI+GSLDIVFGE+DR
Sbjct: 500 LMSKLAPMMLLADIVAIIGSLDIVFGEIDR 529
>gi|239943479|ref|ZP_04695416.1| NADH dehydrogenase subunit D [Streptomyces roseosporus NRRL 15998]
gi|239989933|ref|ZP_04710597.1| NADH dehydrogenase subunit D [Streptomyces roseosporus NRRL 11379]
gi|291446950|ref|ZP_06586340.1| NuoD [Streptomyces roseosporus NRRL 15998]
gi|291349897|gb|EFE76801.1| NuoD [Streptomyces roseosporus NRRL 15998]
Length = 440
Score = 415 bits (1066), Expect = e-114, Method: Composition-based stats.
Identities = 179/412 (43%), Positives = 247/412 (59%), Gaps = 22/412 (5%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K +N GPQHP+ HGVLRLILE+DGE V IG LH G EK +E + + Q
Sbjct: 33 KSDDERIIVNMGPQHPSTHGVLRLILEIDGETVTEARCGIGYLHTGIEKNLEFRNWTQGT 92
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R+DY+ P E AY L VEKLLGIE +P R +IRVL E+ R+ SHL+ + T
Sbjct: 93 TFVTRMDYLTPFFNETAYCLGVEKLLGIEDQVPDRATVIRVLLMELNRLSSHLVCIATGG 152
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
M++GA T ++GF +RE ++ +E +G RM+ A+ RPGG+ QD+PP V+ + + +
Sbjct: 153 MELGATTIMIYGFRDRELVLDLFELFTGLRMNHAFVRPGGLAQDLPPGAVDQLREFIRTM 212
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L + L TGN IFK R ++G + L G +G ++R +G DLRK+ PY Y
Sbjct: 213 KKNLPEYDKLATGNPIFKARMKDVGHLDLTGCMALGATGPVLRSAGLPHDLRKTDPYCGY 272
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
DF++P D Y R+L+R+ EMR+S++II QC+ RL + GPV +D KI P
Sbjct: 273 ETYDFEVPTADTCDSYGRFLIRLEEMRQSLRIIEQCIERL----EPGPVMVADKKIAWPA 328
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
R M SME+LIHHFKL TEG+ VP G+ Y AVE+PKGE GV++
Sbjct: 329 QLALGPDGLGNSLDHIRNIMGTSMEALIHHFKLVTEGFRVPAGQTYTAVESPKGELGVHV 388
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +P+R R P + +LQAM +C+G Q+ADV + S+D V G VDR
Sbjct: 389 VSDGGTRPFRVHFRDPSFTNLQAMAAMCEGGQVADVIVAVASIDPVMGGVDR 440
>gi|291004454|ref|ZP_06562427.1| NADH dehydrogenase subunit D [Saccharopolyspora erythraea NRRL
2338]
Length = 451
Score = 415 bits (1066), Expect = e-114, Method: Composition-based stats.
Identities = 183/411 (44%), Positives = 255/411 (62%), Gaps = 20/411 (4%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ INFGPQHP+AHGVLRL+ EL+GE + + IG LH G EK +E +T+ Q
Sbjct: 45 ESAGEERIVINFGPQHPSAHGVLRLVFELEGETIVKARSVIGYLHTGIEKNVEYRTWTQG 104
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
V + R+DY+AP++ E AY +AVEKLLG+E P R Q RV+ E+ RI SHL+ + T AM
Sbjct: 105 VTFVTRMDYLAPLHNETAYCMAVEKLLGVEAPPRAQTFRVMLMELSRIASHLVFLATGAM 164
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
++GA T +GF ERE+++ E +G RM+ A+ RPGGV QD+P + + + +
Sbjct: 165 EMGATTGMTFGFREREEVLHLLEYLTGLRMNHAFVRPGGVAQDLPEDYRQKVLDFIKVMD 224
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
S L L TG I+KQR ++G + L+ G +G ++R +G AWDLRK QPY Y
Sbjct: 225 SRLPSYDKLFTGQPIWKQRLKDVGYLPLDGCMQLGVTGPVLRSAGLAWDLRKVQPYCGYE 284
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK- 300
+ +F++P DCY RYL+R+ EM +S+KIIRQC++++ + GPV SD KI P
Sbjct: 285 DYEFEVPTSTGADCYARYLLRLEEMHQSLKIIRQCLDKM----EPGPVMVSDAKIAWPAK 340
Query: 301 ---------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLI 345
R M +SMESLIHHFKL TEG+ VP G+VY VE+P+GE G +++
Sbjct: 341 LTIGPDGMGNSLEHVRKIMGQSMESLIHHFKLVTEGFDVPPGQVYVPVESPRGELGYHVV 400
Query: 346 SDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
SDGG +P R +R P + +LQA+ + +G +AD A L SLD V G VDR
Sbjct: 401 SDGGTRPMRVHVREPSFVNLQALPAMVEGGLMADAIASLASLDPVMGGVDR 451
>gi|297625188|ref|YP_003706622.1| NADH dehydrogenase I, D subunit [Truepera radiovictrix DSM 17093]
gi|297166368|gb|ADI16079.1| NADH dehydrogenase I, D subunit [Truepera radiovictrix DSM 17093]
Length = 409
Score = 415 bits (1066), Expect = e-114, Method: Composition-based stats.
Identities = 167/393 (42%), Positives = 244/393 (62%), Gaps = 4/393 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ IN GPQHP+ HGVLRL+++LDGE + R+ P IG LH G EK +E +T+ Q V
Sbjct: 20 TLETKYMRINVGPQHPSTHGVLRLVVDLDGERIARITPQIGYLHTGFEKTMENRTYQQGV 79
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
Y +R+DY+ + AY L+ EKL+G ++P R Q IRV+ +E+ RI SHL+ + T +D
Sbjct: 80 TYSNRMDYLHGFGHDLAYVLSAEKLVGAQVPERAQRIRVILTELNRIASHLVFLGTGILD 139
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GALT + F ERE +M +E G RM+ YFR GG+ +D+P E V + FP
Sbjct: 140 MGALTLLFYTFREREAIMDLFEMVCGVRMNYGYFRVGGLSRDLPDEFVPATRAFIKRFPR 199
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ + + N IF R +G + E A +G +G +R SG D RK+QPY Y +
Sbjct: 200 MLDQYAAMFAKNDIFVNRTKGVGVISKETALDYGLTGPSLRASGVPLDFRKAQPYSGYED 259
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF++P GD Y+R++VR EMRES++I+ Q +++L + GP+ D +I P R
Sbjct: 260 YDFEVPTSTAGDAYNRFMVRFYEMRESLRIVEQALDKL----EPGPIRDPDRRISLPPRE 315
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+++ SME++I HFKL TEG+H P GEVY E+ +GE G YL+SDGG+ PYR K+R P
Sbjct: 316 ELETSMEAVIFHFKLVTEGFHPPRGEVYVPTESARGELGYYLVSDGGSMPYRVKVRVPSL 375
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+LQ++E C G AD+ + + D V G+VD
Sbjct: 376 INLQSLEPACVGGLFADMVVNIATFDPVLGDVD 408
>gi|190893216|ref|YP_001979758.1| NADH-ubiquinone oxidoreductase, chain D [Rhizobium etli CIAT 652]
gi|218534367|sp|B3PY59|NUOD2_RHIE6 RecName: Full=NADH-quinone oxidoreductase subunit D 2; AltName:
Full=NADH dehydrogenase I subunit D 2; AltName:
Full=NDH-1 subunit D 2
gi|190698495|gb|ACE92580.1| NADH-ubiquinone oxidoreductase protein, chain D [Rhizobium etli
CIAT 652]
Length = 404
Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats.
Identities = 196/395 (49%), Positives = 253/395 (64%), Gaps = 5/395 (1%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ +R +N GPQHP+ HGVLRL+LELDGE VERVDPHIG LHRGTEKL E+ T+ Q
Sbjct: 13 EALNTREVLLNLGPQHPSTHGVLRLVLELDGEFVERVDPHIGYLHRGTEKLAESFTYTQI 72
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
P DRLDY+ P + A+ALAVEKLLGIE PIR Q IRV+ +E+ RI HLL M
Sbjct: 73 FPLTDRLDYLCPPSNNLAFALAVEKLLGIEAPIRAQYIRVMMAELARISGHLLITGALPM 132
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D+GA+T L+ ERE +M E +G+RMH ++ R GGV +D+P I +CD FP
Sbjct: 133 DLGAMTALLYVMREREMIMDLLEMITGARMHTSFCRVGGVREDLPDGFFPKIREFCDIFP 192
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+ + D LL NR+F R IG + EDA G SG +R SG WD+R+ +PYE Y
Sbjct: 193 NRIRDYERLLEDNRVFLNRTKGIGVISAEDAVDLGLSGPNLRASGVDWDIRRDEPYEIYD 252
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK- 300
LDF++ GDCY R+ R+ EMRES+ II+QC++++ GP P I P
Sbjct: 253 RLDFNVITRDEGDCYARWRCRVDEMRESIGIIKQCIDQM----PEGPFQIDMPTIAFPLD 308
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ + SME+LI HF L G+ VP GEVY+A+EAPKGE G Y+ISDG KP+R K+RAP
Sbjct: 309 KDRVHCSMEALIQHFDLSAYGFKVPKGEVYSAIEAPKGELGFYIISDGSPKPFRMKVRAP 368
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ +LQA+ + LAD+ A+LGSLD V EVD
Sbjct: 369 SFVNLQALFGVTNARYLADMIAVLGSLDPVMAEVD 403
>gi|256371183|ref|YP_003109007.1| NADH dehydrogenase I, D subunit [Acidimicrobium ferrooxidans DSM
10331]
gi|256007767|gb|ACU53334.1| NADH dehydrogenase I, D subunit [Acidimicrobium ferrooxidans DSM
10331]
Length = 417
Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats.
Identities = 185/391 (47%), Positives = 260/391 (66%), Gaps = 4/391 (1%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
IN GPQHP+ HGVLR++LE++GE V R P IG LH G EK ET T+LQ
Sbjct: 31 DDRMIINMGPQHPSTHGVLRIMLEIEGETVLRSKPVIGYLHTGMEKTAETLTYLQGTTNV 90
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
R+DY++P+N E Y LAVE LLG+E+P R IR+L SE+ RI SH++ + T MD+G+
Sbjct: 91 TRMDYLSPLNNELVYCLAVEDLLGLELPERAIWIRMLMSELNRIASHVMWMATNGMDLGS 150
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ ++GF +RE ++ F+E+ +G RM+ Y RPGGV D+P +D+ D+ +
Sbjct: 151 TSMMIFGFRDREMVLAFFEKVTGLRMNNNYMRPGGVAADLPDGWEDDVSAIVDTIERRVE 210
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ +LLTG IF++R V +G +K E+A +G ++R +G AWDLR+S PY Y ++DF
Sbjct: 211 EYHELLTGQPIFRKRVVGVGIIKPEEAIALSATGPILRSTGVAWDLRRSMPYLAYDQVDF 270
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
D+ +G GD +DRY+VR+ E+ +S++I+RQ V R+ GP A DPK+ PP RA +
Sbjct: 271 DVVVGTVGDTWDRYMVRINEILQSIRIVRQVVERM----PSGPYRAQDPKVTPPPRARID 326
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
SME+LIHHFKLYTEG VP GE YAA+E+P+GE G YL+SDG +PYR IR P +A+L
Sbjct: 327 ESMEALIHHFKLYTEGIRVPAGETYAAIESPRGEIGCYLVSDGSARPYRMHIRGPSFANL 386
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Q++ + +G +AD AI S+D V GEVDR
Sbjct: 387 QSLPVMLRGALIADAIAITSSVDPVMGEVDR 417
>gi|325003721|ref|ZP_08124833.1| NADH dehydrogenase subunit D [Pseudonocardia sp. P1]
Length = 450
Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats.
Identities = 186/412 (45%), Positives = 248/412 (60%), Gaps = 17/412 (4%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
MD IN GPQHP+ HGVLRL+LEL+GE V + IG LH G EK E +T+ Q
Sbjct: 40 MDADHDDRIVINMGPQHPSTHGVLRLVLELEGETVTQGRAVIGYLHTGIEKNCEYRTWTQ 99
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
V + R DY+AP+ E AY +AVEKLL +E+P R + IRVL E+ RI SHL+ + T
Sbjct: 100 GVTFVTRADYLAPLFNEAAYCMAVEKLLDVEVPHRAEHIRVLLMELNRIGSHLVALATGG 159
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
M++GALT GF ERE+++ E +G RM+ A+ RPGG+ QD+P E + + D
Sbjct: 160 MELGALTGMTSGFREREEVLHLLEFLTGLRMNHAFIRPGGLAQDLPEGYRERVTEFLDVM 219
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
S L D LLTG I+KQR +G + ++ G SG ++R +G AWDLRK PY Y
Sbjct: 220 DSRLPDYDRLLTGQPIWKQRLEGVGYLPVDGCLALGASGPILRSAGLAWDLRKHMPYSVY 279
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E DF++P DCY RY +R+ E+ ES+KI+RQ + +L G V DPK+ P
Sbjct: 280 DEYDFEVPTATEADCYARYRLRVAEIHESLKIMRQALAKLDEIGP-GRVMVDDPKVAWPA 338
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
R M +SMESLIHHFKL TEG+HVP G+ Y VE+P+GE GV+L
Sbjct: 339 QLSIGSDGMGTTLEHVRKIMGQSMESLIHHFKLVTEGFHVPPGQAYVGVESPRGELGVHL 398
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +P R +R P + +LQ M + +G Q+ADV A + S+D V G DR
Sbjct: 399 VSDGGTRPVRVHVRDPSFVNLQTMPAMSEGGQVADVIAAVASIDPVMGGCDR 450
>gi|222824435|ref|YP_002576009.1| NADH-quinone oxidoreductase, D subunit [Campylobacter lari RM2100]
gi|222539656|gb|ACM64757.1| NADH-quinone oxidoreductase, D subunit [Campylobacter lari RM2100]
Length = 408
Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats.
Identities = 172/394 (43%), Positives = 241/394 (61%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ +N GPQHP+AHG LRLILELDGE + + P IG +HRG EK+ E + + +
Sbjct: 17 EREDGVMIVNLGPQHPSAHGNLRLILELDGEEITKAAPCIGYMHRGMEKMAENMIYQEFI 76
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DR+DY+A +AY AVEKL G+EIP R +IR++ E+ RI SHLL + T A+D
Sbjct: 77 PTTDRMDYIAASANNYAYVAAVEKLCGLEIPRRASVIRMILLELNRIASHLLWLATHALD 136
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA+T L+ F ERE ++ E+ G+R+ + R GGV D+P ++++ +C FP+
Sbjct: 137 IGAMTVFLYCFREREYVLDLIEKYCGARLTHSSMRIGGVMLDLPDGFLDELLAFCKKFPN 196
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ D LL NRI++ R N+G V E A WG SGVM+RGSG A+D+RK +PY Y E
Sbjct: 197 DIKDYEALLDDNRIWRARTENVGVVSKEQALSWGCSGVMLRGSGIAYDIRKEEPYLLYDE 256
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+DF +P+ K GD Y RY V M E RES+KI+ QC + + P+ V +
Sbjct: 257 VDFGVPVAKMGDSYARYKVYMQEFRESLKILTQCAKLYQDTPPE--ILCNHPEYVSASKE 314
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ SL+ HF L T+G P GEVY E+PKGE G ++ SDG +PYR + R P +
Sbjct: 315 QIMTQNYSLMQHFVLVTQGLKPPKGEVYVPTESPKGELGFFIHSDGSGRPYRLRARTPSF 374
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H +E + G LAD AILGS++IV GE+DR
Sbjct: 375 FHCAFLEEMLVGSYLADAVAILGSINIVLGEIDR 408
>gi|239980149|ref|ZP_04702673.1| NADH dehydrogenase subunit D [Streptomyces albus J1074]
Length = 459
Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats.
Identities = 176/412 (42%), Positives = 244/412 (59%), Gaps = 21/412 (5%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K +N GPQHP+ HGVLRLILE+DGE V IG LH G EK +E +T+ Q
Sbjct: 51 KSDDERIIVNMGPQHPSTHGVLRLILEIDGETVTEARCGIGYLHTGIEKNLEYRTWTQGT 110
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R+DY+ P E AY L VEKLLGIE +P R +IRVL E+ R+ SHL+ + T
Sbjct: 111 TFVTRMDYLTPFYNEAAYCLGVEKLLGIEDQVPDRASVIRVLLMELNRLSSHLVAIATGG 170
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
M++GA T ++GF +RE ++ +E +G RM+ A+ RPGG+ QD+P ++ + +
Sbjct: 171 MELGATTIMIYGFRDREVVLDLFELITGLRMNHAFIRPGGLAQDLPAGALDQVREGVKTL 230
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+++ L TGN +F+ R IG + L G +G ++R +G DLRK+ PY Y
Sbjct: 231 RKNIDEYDKLATGNPLFQGRMKGIGYLDLAGCMSLGITGPVLRSTGLPHDLRKTDPYCGY 290
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
DF++P D Y R+L+R+ EMRES+KI+ QC++RL G V SD KI P
Sbjct: 291 ETYDFEVPTADTCDSYGRFLIRLAEMRESLKIVEQCLDRLRE---PGEVMVSDKKIAWPA 347
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
+ M SMESLIHHFKL TEG+ VP G+ YAAVE+PKGE G ++
Sbjct: 348 QLALGPDGLGNSLDHIKKIMGTSMESLIHHFKLVTEGFRVPPGQAYAAVESPKGELGAHI 407
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDG +PYR R P + +LQA+ +C+G Q+ADV + S+D V G VDR
Sbjct: 408 VSDGTTRPYRVHFRDPSFTNLQAVAAMCEGGQVADVIVAVASIDPVMGGVDR 459
>gi|13449329|ref|NP_085511.1| NADH dehydrogenase subunit 7 [Arabidopsis thaliana]
gi|6851019|emb|CAA69735.3| NADH dehydrogenase subunit 7 [Arabidopsis thaliana]
Length = 394
Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats.
Identities = 235/394 (59%), Positives = 298/394 (75%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K++ ++FT NFGPQHPAAHGV RL+LE++GE+VER +PHIG LHRGTEKLIE KT+LQA+
Sbjct: 5 KRQIKNFTSNFGPQHPAAHGVSRLVLEMNGEVVERAEPHIGSLHRGTEKLIEYKTYLQAL 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR DYV+ M QEHA++ AVEKLL E+P+R Q IRVL+ EI RI +H L +TT AMD
Sbjct: 65 PYSDRSDYVSMMAQEHAHSSAVEKLLNCEVPLRAQYIRVLFREITRISNHSLALTTHAMD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGALTP LW FEEREKL+ FYER SG+RMHA++ RPGGV QD+P L DI + F S
Sbjct: 125 VGALTPFLWAFEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCRDIDSFTQQFAS 184
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++++ ++ TGNRI+KQR V+IGTV + A WGFSGVM+RG G WD R++ PY+ + +
Sbjct: 185 RIDELEEMSTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGPGVCWDSRRAAPYDVHDQ 244
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
D D+P+G GD YDRY +R+ EMR+S++II QC+N++ G + A D K+ PP R
Sbjct: 245 SDLDVPVGTRGDRYDRYCIRIEEMRQSLRIIVQCLNQM----PSGMIKADDRKLCPPSRC 300
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
MK SMES IHHF+LYTEG+ VP Y AVEAPKGEFGV+L+S+G N+PYR KIRAPG
Sbjct: 301 RMKLSMESSIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGS 360
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AH Q ++ + K H ADV I+G+ DIVFGEVDR
Sbjct: 361 AHSQGLDSMSKHHMPADVVTIIGTQDIVFGEVDR 394
>gi|320009201|gb|ADW04051.1| NADH dehydrogenase I, D subunit [Streptomyces flavogriseus ATCC
33331]
Length = 452
Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats.
Identities = 176/412 (42%), Positives = 246/412 (59%), Gaps = 22/412 (5%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K +N GPQHP+ HGVLRLILE+DGE V IG LH G EK +E + + Q
Sbjct: 45 KSDDERIIVNMGPQHPSTHGVLRLILEIDGETVTEARCGIGYLHTGIEKNLEFRNWTQGT 104
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R+DY+ P E AY L VEKLLGIE +P R ++RVL E+ RI SHL+ + T
Sbjct: 105 TFVTRMDYLTPFFNEAAYCLGVEKLLGIEDQVPDRATVLRVLLMELNRISSHLVCIATGG 164
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
M++GA T ++GF +RE ++ +E +G RM+ A+ RPGG+ QD+P V+ + + +
Sbjct: 165 MELGATTIMIYGFRDRELVLDLFELITGLRMNHAFIRPGGLAQDLPMGAVDRLREFVKTM 224
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L + L TGN IFK R ++G + L G +G ++R +G DLRK+ PY Y
Sbjct: 225 KKNLPEYDKLATGNPIFKARMQDVGYLDLTGCVALGATGPVLRSAGLPHDLRKTDPYCGY 284
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
DFD+P D Y R+L+R+ EMR+S++I+ QC+ RL + GPV +D KI P
Sbjct: 285 ETYDFDVPTADTCDAYGRFLIRLEEMRQSLRIVEQCLERL----EPGPVMVADKKIAWPA 340
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
+ M SME+LIHHFKL TEG+ VP G+ Y A+E+PKGE GV++
Sbjct: 341 QLALGPDGLGNSLDHIKKIMGTSMEALIHHFKLVTEGFRVPAGQAYTALESPKGELGVHV 400
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +P+R R P + +LQAM +C+G Q+ADV + S+D V G VDR
Sbjct: 401 VSDGGTRPFRVHFRDPSFTNLQAMAAMCEGGQVADVIVAVASIDPVMGGVDR 452
>gi|222054362|ref|YP_002536724.1| NADH dehydrogenase I, D subunit [Geobacter sp. FRC-32]
gi|221563651|gb|ACM19623.1| NADH dehydrogenase I, D subunit [Geobacter sp. FRC-32]
Length = 792
Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats.
Identities = 171/396 (43%), Positives = 241/396 (60%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
++ + +N GPQHP HGV+R IL+L+GE + +D +IG HRG EK+ E + + Q
Sbjct: 401 FERVDEETLILNLGPQHPGTHGVIRFILKLNGEEIVDMDSNIGFHHRGAEKMGERQHWNQ 460
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY DR+DY+A + AY +VEKL I +P R +RV+ +E+ RI SHL+ + T A
Sbjct: 461 YIPYTDRIDYLAGVQNNLAYVNSVEKLCSITVPDRAITVRVMLAELFRIASHLVWLGTFA 520
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA+TP + F +REK+ E +G RMH A+FR GGV +D+P + + F
Sbjct: 521 ADIGAMTPVFYTFTDREKIFDIVEMITGGRMHPAWFRIGGVVEDLPEGWEAPVREFLAWF 580
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P L + DLL GN IF R +G + +A WG SG +R G WDLRK PY Y
Sbjct: 581 PPRLKEYEDLLNGNPIFTARLKGVGVITRAEAMEWGISGPNLRACGFDWDLRKKMPYAGY 640
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
DF + + + GDC+ RYLVR+ EMR+S++I+RQC+ + G G + + + P+
Sbjct: 641 DRFDFQVAVAEGGDCWARYLVRLEEMRQSLRIVRQCLENMPG----GRWISEEYRYAIPQ 696
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ D +ESLIHHF T G P GE YAA+EAPKGE G +++SDG N PYR +IR P
Sbjct: 697 KPDTLNDIESLIHHFVNSTRGMTPPRGETYAAIEAPKGENGYFVVSDGINIPYRVRIRTP 756
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ H+QA+ + KG LAD AI+GS+D V +VDR
Sbjct: 757 SFPHIQALPIMSKGWLLADFLAIIGSIDFVLADVDR 792
>gi|257459163|ref|ZP_05624282.1| NADH dehydrogenase, d subunit [Campylobacter gracilis RM3268]
gi|257443548|gb|EEV18672.1| NADH dehydrogenase, d subunit [Campylobacter gracilis RM3268]
Length = 408
Score = 413 bits (1063), Expect = e-113, Method: Composition-based stats.
Identities = 178/394 (45%), Positives = 245/394 (62%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ + +NFGPQHP+AHG L+L+LELDGE + R P +G +HRG EK+ E + + V
Sbjct: 17 EREGANMILNFGPQHPSAHGQLKLVLELDGERIVRARPGVGYMHRGIEKMAENMIYAEFV 76
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DR+DYVA + + + AVEKL GIE+P R Q+IR + E+ RI SHLL + T A+D
Sbjct: 77 PVTDRIDYVASGSNNYGFCAAVEKLCGIEVPRRAQIIRTILLELNRISSHLLFLGTHALD 136
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA+T L+ F RE ++ E+ G+R+ + GGV D+P +E++ +CD FPS
Sbjct: 137 IGAMTVFLYCFRSREYILDLIEKYCGARLTHNNIKIGGVFLDLPNGWLEEMLKFCDEFPS 196
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ + D+L NRI+ R +G + EDA G SGV +R SG AWD+RK +PY Y E
Sbjct: 197 DIKEFEDMLDTNRIWLMRTEGVGVISHEDALSCGCSGVTLRASGHAWDIRKEEPYLIYDE 256
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LDFD+P GDCY RY M EMRES+KI+RQC + + A DP V P +
Sbjct: 257 LDFDVPYASEGDCYARYKCYMAEMRESLKILRQCAKHYPLSDPQ--ILAIDPAYVNPSKE 314
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ SL+ HF L T+G PVGE+YAA E+PKGE G Y+ S G ++PYR KIR P +
Sbjct: 315 QIMTQNYSLMQHFVLVTQGLRPPVGEIYAASESPKGELGFYIRSMGQSRPYRLKIRTPSF 374
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H E + G LAD +AI+GS +I+ GEVDR
Sbjct: 375 WHCAVYEEILPGQYLADAAAIIGSTNIILGEVDR 408
>gi|328884315|emb|CCA57554.1| NADH-ubiquinone oxidoreductase chain D [Streptomyces venezuelae
ATCC 10712]
Length = 440
Score = 413 bits (1063), Expect = e-113, Method: Composition-based stats.
Identities = 178/412 (43%), Positives = 245/412 (59%), Gaps = 22/412 (5%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K +N GPQHP+ HGVLRLILE+DGE V IG LH G EK +E +T+ Q
Sbjct: 33 KADDERIIVNMGPQHPSTHGVLRLILEIDGETVTEARCGIGYLHTGIEKNLEYRTWTQGT 92
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R+DY+ E AY L VEKLLGI IP R +IRVL E+ R+ SHL+ + T
Sbjct: 93 TFVTRMDYLTSFYNETAYCLGVEKLLGITDQIPDRASVIRVLLMELNRLSSHLVCIATGG 152
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
M++GA T ++GF +RE ++ YE +G RM+ A+ RPGG+ QD+PP V+ + + +
Sbjct: 153 MELGATTIMIYGFRDREMILDLYELITGLRMNHAFIRPGGLAQDLPPGAVDAVREFVKTM 212
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L + L TGN IFK R ++G + L G +G ++R +G DLRK+ PY Y
Sbjct: 213 KKNLPEYDKLATGNPIFKARMQDVGYLDLTGCMALGATGPILRSAGLPHDLRKTDPYCGY 272
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+F++P D Y R+LVR+ EMR+S++I+ QC++RL G V D KI P
Sbjct: 273 ENYEFEVPTADSCDSYGRFLVRLEEMRQSLRIVEQCLDRLA----PGDVMVGDKKIAWPA 328
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
+ M SME+LIHHFKL TEG+ VP G+ YAAVE+PKGE GV++
Sbjct: 329 QLALGTDGLGNSMDHIKKIMGTSMEALIHHFKLVTEGFRVPAGQAYAAVESPKGELGVHV 388
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +P+R R P + +LQAM +C+G Q+ADV + S+D V G VDR
Sbjct: 389 VSDGGTRPFRVHFRDPSFTNLQAMAAMCEGGQVADVIVAVASIDPVMGGVDR 440
>gi|291452004|ref|ZP_06591394.1| NuoD [Streptomyces albus J1074]
gi|291354953|gb|EFE81855.1| NuoD [Streptomyces albus J1074]
Length = 423
Score = 413 bits (1063), Expect = e-113, Method: Composition-based stats.
Identities = 176/412 (42%), Positives = 244/412 (59%), Gaps = 21/412 (5%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K +N GPQHP+ HGVLRLILE+DGE V IG LH G EK +E +T+ Q
Sbjct: 15 KSDDERIIVNMGPQHPSTHGVLRLILEIDGETVTEARCGIGYLHTGIEKNLEYRTWTQGT 74
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R+DY+ P E AY L VEKLLGIE +P R +IRVL E+ R+ SHL+ + T
Sbjct: 75 TFVTRMDYLTPFYNEAAYCLGVEKLLGIEDQVPDRASVIRVLLMELNRLSSHLVAIATGG 134
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
M++GA T ++GF +RE ++ +E +G RM+ A+ RPGG+ QD+P ++ + +
Sbjct: 135 MELGATTIMIYGFRDREVVLDLFELITGLRMNHAFIRPGGLAQDLPAGALDQVREGVKTL 194
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+++ L TGN +F+ R IG + L G +G ++R +G DLRK+ PY Y
Sbjct: 195 RKNIDEYDKLATGNPLFQGRMKGIGYLDLAGCMSLGITGPVLRSTGLPHDLRKTDPYCGY 254
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
DF++P D Y R+L+R+ EMRES+KI+ QC++RL G V SD KI P
Sbjct: 255 ETYDFEVPTADTCDSYGRFLIRLAEMRESLKIVEQCLDRLRE---PGEVMVSDKKIAWPA 311
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
+ M SMESLIHHFKL TEG+ VP G+ YAAVE+PKGE G ++
Sbjct: 312 QLALGPDGLGNSLDHIKKIMGTSMESLIHHFKLVTEGFRVPPGQAYAAVESPKGELGAHI 371
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDG +PYR R P + +LQA+ +C+G Q+ADV + S+D V G VDR
Sbjct: 372 VSDGTTRPYRVHFRDPSFTNLQAVAAMCEGGQVADVIVAVASIDPVMGGVDR 423
>gi|302035620|ref|YP_003795942.1| NADH-quinone oxidoreductase subunit D [Candidatus Nitrospira
defluvii]
gi|300603684|emb|CBK40015.1| NADH-quinone oxidoreductase, subunit D [Candidatus Nitrospira
defluvii]
Length = 415
Score = 413 bits (1063), Expect = e-113, Method: Composition-based stats.
Identities = 167/396 (42%), Positives = 249/396 (62%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ ++ +N GPQHP+ HGVL++ILEL+GE + + P +G LHRG EKL E T+ Q
Sbjct: 24 LPTLRTEELLLNMGPQHPSTHGVLKVILELEGERLVKSTPVMGFLHRGVEKLAEEGTYHQ 83
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+P+ DRLDYV M AY AVEKL+ I +P R + +R + +EI RI+ H + TQA
Sbjct: 84 FIPHTDRLDYVCAMYNNFAYCRAVEKLMNITVPDRAEYLRTIVAEIQRIIGHQFWLGTQA 143
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+D+GA+T + F +RE L+ +++ G+R+ +++R GGV +D L + + D F
Sbjct: 144 LDIGAMTVFFYCFRDREILLDWFDELCGARLTTSWYRIGGVERDFTLSLFAKLKQFLDYF 203
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P +++ L NRI+ R + + EDA +G SG +RGSG +DLRK +PY Y
Sbjct: 204 PPKIDEYVIFLEKNRIWLARTKGVAVISAEDALSFGLSGPTLRGSGVDYDLRKYEPYSAY 263
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+ +F +P+GK+GD YDRY +R+ E+ ESVKIIRQC+ ++ GP+ A P + P
Sbjct: 264 PKCEFSVPVGKNGDTYDRYWIRVQELYESVKIIRQCLEQIQD----GPIMADVPSVTLPP 319
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ + ++ES+I FKL+++G++ P GE+Y EA KGE G Y++S GG KPYR KIRAP
Sbjct: 320 KERVFTNLESMIQQFKLFSQGFNAPPGEIYCGTEAHKGELGFYIVSTGGGKPYRLKIRAP 379
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ H+ A + + KG+ +AD I G+ DIV GE DR
Sbjct: 380 SFIHMGAFDHMSKGYMIADAVTIFGTYDIVMGECDR 415
>gi|187736103|ref|YP_001878215.1| NADH dehydrogenase I, D subunit [Akkermansia muciniphila ATCC
BAA-835]
gi|229891267|sp|B2ULZ0|NUOD_AKKM8 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|187426155|gb|ACD05434.1| NADH dehydrogenase I, D subunit [Akkermansia muciniphila ATCC
BAA-835]
Length = 414
Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats.
Identities = 184/391 (47%), Positives = 249/391 (63%), Gaps = 4/391 (1%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ T+N GP HPA HGVLRL+LELDGE + DP +G LHRG EK+ ET + Q VPY
Sbjct: 28 GETMTLNVGPSHPATHGVLRLVLELDGEEIISCDPVVGHLHRGMEKIGETIQYNQFVPYT 87
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DR DY+AP++ AYA AVEKLLG E+P RGQ +RVL E+ R SH+L V MDVGA
Sbjct: 88 DRFDYLAPLSNNIAYACAVEKLLGWELPPRGQALRVLALELSRFSSHILGVGVYGMDVGA 147
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+T L+ +EEREK+ FYE+ +G+R ++Y R GG +D+P E+++++ +CD L+
Sbjct: 148 MTVFLYCYEEREKIHNFYEQLTGARFTSSYTRIGGQTRDVPNEMLKEVLVFCDEAAKTLD 207
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ LL N+IF R +G + E A WG +G +R SG DLRK PY Y +F
Sbjct: 208 ETEALLLKNKIFIDRLQGVGVISREKALSWGITGANLRASGIKRDLRKLTPYLGYENYEF 267
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
D+P+G+HGDCYDR+ VR+ EMR+S++IIRQ + + GP++ D K P++ +
Sbjct: 268 DVPVGEHGDCYDRFTVRIEEMRQSLRIIRQVIETMPD----GPINMVDTKGTLPEKKKVL 323
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
MESLI F T G + P G+VY A E PKGE G +L S GG P R ++R+P + +L
Sbjct: 324 TDMESLIRQFMTTTMGVNAPAGQVYFAAENPKGELGFFLDSKGGGLPNRLRMRSPSFCNL 383
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ L KGH ++DV AILGS D V GE DR
Sbjct: 384 SILPELMKGHLVSDVPAILGSFDFVMGECDR 414
>gi|291285960|ref|YP_003502776.1| NADH dehydrogenase I, D subunit [Denitrovibrio acetiphilus DSM
12809]
gi|290883120|gb|ADD66820.1| NADH dehydrogenase I, D subunit [Denitrovibrio acetiphilus DSM
12809]
Length = 395
Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats.
Identities = 170/391 (43%), Positives = 255/391 (65%), Gaps = 3/391 (0%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
S TIN GPQHP+ HGVLRLI++LDGE + V+P +G LHRGTEKL E +T+ Q +P
Sbjct: 8 SEVVTINMGPQHPSTHGVLRLIVDLDGETIVNVEPDVGFLHRGTEKLAENRTYHQTIPLT 67
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DRLDY++P++ AY LAVEK +EIP R + +R++ +E+ R++SHL+ + T A+D+GA
Sbjct: 68 DRLDYLSPLSNNLAYCLAVEKFFNVEIPERAEYLRIILTEMSRLVSHLVWIATHALDIGA 127
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+T L+ F ERE+L+ +E +G RM +++ R GGV +D+P E + + F + ++
Sbjct: 128 MTVFLYAFREREELLDLFEMGTGQRMTSSWMRIGGVREDMPEEFYTTLADFVSRFEANVD 187
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+LLT NRI+ R + IG + E+ +G SG ++RGSG +DLR+ + Y Y ++
Sbjct: 188 TYENLLTTNRIWMGRTIGIGHLTAEETMVYGTSGPLMRGSGVDFDLRRDETYSIYDRFNW 247
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+IP+ + GD Y RY VRM EMRES KI+ Q + ++ G V DP++ PK D+
Sbjct: 248 EIPVEQEGDTYARYKVRMKEMRESNKILAQALEQMPA---EGEVMTDDPRVSMPKHEDVY 304
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
ME+LI F + ++G+ P GE Y +E KGE G YL+S+G +PYR KIR+P + +L
Sbjct: 305 ERMEALIRRFYIVSKGFRPPKGETYQGIEGTKGEVGFYLVSEGEERPYRMKIRSPSFVNL 364
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + KGH LAD+ A++G+ D+V GE+DR
Sbjct: 365 GVLNKMAKGHMLADLVAVIGTNDVVLGEIDR 395
>gi|91078082|ref|XP_972109.1| PREDICTED: similar to NADH dehydrogenase iron-sulfur protein 2,
mitochondrial [Tribolium castaneum]
gi|270002319|gb|EEZ98766.1| hypothetical protein TcasGA2_TC001330 [Tribolium castaneum]
Length = 455
Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats.
Identities = 223/394 (56%), Positives = 289/394 (73%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++K + +NFGP HPAAHG LR+I ELDGE+V +DPHIGLLHRGTEKLIE KT+ QA+
Sbjct: 66 ERKVTNLVVNFGPCHPAAHGCLRMITELDGEMVRHLDPHIGLLHRGTEKLIEYKTYNQAI 125
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+PM EHA+ LA EKLL I+IP R + IRVL+ EI R+++H+ + +D
Sbjct: 126 PYFDRLDYVSPMCSEHAFCLAAEKLLNIDIPRRAKFIRVLFDEITRLMNHMAATSFLILD 185
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VG +TP W FEEREKLM YER G+R+HA Y+R GGV+QD+P L++DI F
Sbjct: 186 VGGITPLFWLFEEREKLMEVYERVCGARLHANYYRIGGVNQDLPIGLLDDIHNLVSKFGE 245
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++++ DL+T NR+F R NIG V +DA GFSG M+R SG WDLRK++PYE YSE
Sbjct: 246 RIDEVEDLVTDNRLFIARTKNIGRVAAQDALNMGFSGCMLRASGIKWDLRKTRPYEIYSE 305
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
L+FD+P+G +GD YDR+ VR+ EMR+SV+I+ Q +N++ G V D KI PP R
Sbjct: 306 LEFDVPVGSNGDIYDRFRVRLEEMRQSVRIVEQVINQM----PPGEVKLDDHKISPPNRR 361
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SME++IHHFK++++G+ VP G Y ++E PKGEFGVYL+SDG + PYRCKIR P +
Sbjct: 362 EMKSSMEAIIHHFKIFSQGFQVPPGSTYTSIEHPKGEFGVYLVSDGSSVPYRCKIRTPSF 421
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HL AM + K H LADV AIL +LDIVFG+VDR
Sbjct: 422 IHLSAMNHIGKNHYLADVVAILATLDIVFGDVDR 455
>gi|227822750|ref|YP_002826722.1| NADH-quinone oxidoreductase chain D1 [Sinorhizobium fredii NGR234]
gi|227341751|gb|ACP25969.1| NADH-quinone oxidoreductase chain D1 [Sinorhizobium fredii NGR234]
Length = 404
Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats.
Identities = 193/395 (48%), Positives = 254/395 (64%), Gaps = 5/395 (1%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ ++ +N GPQHP+ HGVLRL+LELDGE V RVDPHIG LHRGTEKL E+ T+ Q
Sbjct: 13 EALDTKEVLLNLGPQHPSTHGVLRLVLELDGEFVARVDPHIGYLHRGTEKLAESFTYTQI 72
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
P DRLDYV P + A+ALAVEKLLGIE PIR Q IRV+ +E+ RI HLL M
Sbjct: 73 FPLTDRLDYVCPPSNNLAFALAVEKLLGIEAPIRAQYIRVMMAELARISGHLLITGALPM 132
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D+GA+T L+ ERE +M E A+G+RMH ++ R GGV +D+P + I +CD FP
Sbjct: 133 DLGAMTALLYAMREREMIMDLLEMATGARMHTSFCRVGGVREDLPEGFLPKIREFCDIFP 192
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+ + D L+ NR+F +R IG + ED G SG +R SG WD+R+ +PYE Y
Sbjct: 193 NRIRDYERLIENNRVFLKRTQGIGVISPEDGIDLGLSGPNLRASGVDWDIRRDEPYEIYD 252
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK- 300
LDF++ + GDCY R+ R+ EMRESV++I QC+ ++ GP P I P
Sbjct: 253 RLDFNVITREEGDCYARWQCRVEEMRESVRLIEQCLEQM----PEGPFQVDMPTIAFPMD 308
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ + SME+LI HF L G+ VP GEVY+A+EAPKGE G Y+IS+G KP+R K+RAP
Sbjct: 309 KDRVHCSMEALIQHFDLSAYGFKVPKGEVYSAIEAPKGELGFYIISNGSEKPFRMKVRAP 368
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ +LQA+ + LAD+ A+LGSLD V EVD
Sbjct: 369 SFVNLQALFGVTNARYLADMIAVLGSLDPVMAEVD 403
>gi|256380662|ref|YP_003104322.1| NADH dehydrogenase subunit D [Actinosynnema mirum DSM 43827]
gi|255924965|gb|ACU40476.1| NADH dehydrogenase I, D subunit [Actinosynnema mirum DSM 43827]
Length = 483
Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats.
Identities = 179/411 (43%), Positives = 248/411 (60%), Gaps = 19/411 (4%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ +N GPQHP+ HGVLRL+LEL+GE V + IG LH G EK E +T+ Q
Sbjct: 76 EAAGDERIVMNLGPQHPSTHGVLRLVLELEGETVTQARSVIGYLHTGIEKNTEYRTWTQG 135
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
V + R+DY+AP++ E AY LAVEKLLGIE+P R Q RVL E+ R+ SHL+ + T M
Sbjct: 136 VTFVTRMDYLAPLHSEAAYCLAVEKLLGIEVPQRAQDARVLLMELNRVSSHLVALATGGM 195
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
++GALT GF ERE+++ E +G RM+ A+ RPGG+ QD+P + E + +
Sbjct: 196 ELGALTGMTAGFREREEVLHLLEHLTGLRMNHAFIRPGGLAQDLPADTAEKVLAFLKVMD 255
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
S L D LLTG I++ R +G + ++ G +G +R +G WDLRK +PY Y
Sbjct: 256 SRLPDYDKLLTGQPIWRNRLSGVGYLPVDACLALGITGPPLRSAGLPWDLRKVEPYSGYE 315
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK- 300
+F++P DC+ RY +R+ E+ +S+KI+RQ V RL GPV +D K+ P
Sbjct: 316 NYEFEVPTANEADCFARYRLRLEEIHQSLKIVRQAVERLRE---PGPVMVADAKVAWPAQ 372
Query: 301 ---------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLI 345
R M +SMESLIHHFKL TEG+HVP G+VY VE+P+GE G +++
Sbjct: 373 LTIGSDGMGNSLEHVRKIMGQSMESLIHHFKLVTEGFHVPAGQVYVPVESPRGELGFHVV 432
Query: 346 SDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
SDGG +P R +R P + +LQAM +C+G +ADV A + SLD V G DR
Sbjct: 433 SDGGTRPMRVHVREPSFVNLQAMPAMCEGSMVADVIASVASLDPVMGGCDR 483
>gi|331699309|ref|YP_004335548.1| NAD(P)H-quinone oxidoreductase subunit H [Pseudonocardia
dioxanivorans CB1190]
gi|326953998|gb|AEA27695.1| NAD(P)H-quinone oxidoreductase subunit H [Pseudonocardia
dioxanivorans CB1190]
Length = 440
Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats.
Identities = 190/411 (46%), Positives = 252/411 (61%), Gaps = 20/411 (4%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
D + IN GPQHP+ HGVLRL+LEL+GE V + IG LH G EK E +T+ Q
Sbjct: 34 DGEHDERIVINMGPQHPSTHGVLRLVLELEGETVTQARSVIGYLHTGIEKNCEYRTWTQG 93
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
V + R DY+AP+ E AY VEKLLG+E+P R Q+IRV+ E+ RI SHL+ + T M
Sbjct: 94 VTFVTRADYLAPLFNEAAYVKGVEKLLGVEVPERAQIIRVMLMEVNRIGSHLVCLATGGM 153
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
++GALT GF ERE+++ E +G RM+ AYFRPGG+ QD+P + E I + F
Sbjct: 154 ELGALTGMTAGFREREEVLHLLEYLTGLRMNHAYFRPGGLAQDLPVDWKEKIDEFLAVFH 213
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
S L D LLTG I+KQR +G + ++ G +G ++R +G AWD RK +PY Y
Sbjct: 214 SRLGDYDRLLTGQPIWKQRLQGVGYLPIDGCLALGATGPILRSAGLAWDQRKVEPYWGYD 273
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK- 300
+ DF++P DCY RYLVR+ E+ ES+KII+Q RL + GPV D KI P
Sbjct: 274 QYDFEVPTETGADCYSRYLVRLHEIHESLKIIKQAAERL----EPGPVMVEDRKIAWPAQ 329
Query: 301 ---------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLI 345
R M +SMESLIHHFKL TEG+HVP G+VY VE+P+GE GV+L+
Sbjct: 330 LSIGSDGMGNTLEHVRKIMGQSMESLIHHFKLVTEGFHVPAGQVYTCVESPRGELGVHLV 389
Query: 346 SDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
SDGG +P R +R P + +LQ M + +G +ADV A + S+D V G VDR
Sbjct: 390 SDGGTRPVRVHMREPSFVNLQTMPAMSEGGMVADVIAAVASIDPVMGGVDR 440
>gi|195111610|ref|XP_002000371.1| GI10189 [Drosophila mojavensis]
gi|193916965|gb|EDW15832.1| GI10189 [Drosophila mojavensis]
Length = 478
Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats.
Identities = 214/386 (55%), Positives = 279/386 (72%), Gaps = 4/386 (1%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
+NFGP HPAAHGVLR++LELD E V DPHIGLLHRGTEKLIE KT+ QAVPYF R DY
Sbjct: 97 VNFGPAHPAAHGVLRMMLELDNETVLSADPHIGLLHRGTEKLIEHKTYTQAVPYFARTDY 156
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
V+ M+ E AYALAVEKLL IE+P R + IR L E+ R+ +H + + T +D GA+TP
Sbjct: 157 VSCMSCEQAYALAVEKLLNIEVPPRAKYIRTLCGELMRLTNHTMAIGTSVLDCGAITPLF 216
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
W FEEREKL F ER SG+R+HAAY RPGGV D+P +D+ + +F L+++ D+
Sbjct: 217 WLFEEREKLYEFSERLSGARLHAAYIRPGGVAMDMPLGYGKDLHEFLKAFTQRLDEVEDV 276
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
+T NRI++ RN++IG + +A +G +G ++R +G WDLRK QPY+ Y+ + F++PIG
Sbjct: 277 VTDNRIWRMRNIDIGRISAHEALNYGCTGPVLRATGVKWDLRKQQPYDAYAAMKFNVPIG 336
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
GDCYDRYLVRM EMRES I+ QC++++ G + D K+ PP+R+ MK ME
Sbjct: 337 SQGDCYDRYLVRMREMRESCSIMLQCLDQM----PPGNIKVDDRKVAPPQRSKMKTGMED 392
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
LIHHFK +++GY+VP G Y A+E+PKGEFGVYL+SDG ++PYRCKIRA Y HL +
Sbjct: 393 LIHHFKFFSQGYNVPPGATYTAIESPKGEFGVYLVSDGSSRPYRCKIRAASYTHLALLSK 452
Query: 371 LCKGHQLADVSAILGSLDIVFGEVDR 396
L + LADV AI+GSLDIVFGE+DR
Sbjct: 453 LSPTYLLADVVAIIGSLDIVFGEIDR 478
>gi|289641424|ref|ZP_06473588.1| NADH dehydrogenase I, D subunit [Frankia symbiont of Datisca
glomerata]
gi|289508760|gb|EFD29695.1| NADH dehydrogenase I, D subunit [Frankia symbiont of Datisca
glomerata]
Length = 499
Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats.
Identities = 188/412 (45%), Positives = 258/412 (62%), Gaps = 22/412 (5%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ S T+N GPQHP+ HGVLRL+LE++GE V R IG LH G EK E +T+ QAV
Sbjct: 92 EDYSERLTVNMGPQHPSTHGVLRLVLEIEGETVTRTQVVIGYLHTGIEKSCEFRTWTQAV 151
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R DY+AP+ E AY LA+EKLLGI E+P R +IRVL E+ RI SHL+ + T A
Sbjct: 152 TFLTRADYLAPLFNETAYCLALEKLLGITDEVPERATVIRVLVMELQRIASHLVWLATGA 211
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
M++GA T ++GF EREK++ E+ +G RM+ AY RPGG+ QD+P +++ DI +
Sbjct: 212 MEIGATTGMIFGFREREKILDLLEKITGLRMNHAYVRPGGLAQDLPNDVIRDIQAFLVDM 271
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P + + LL+G I+K R V++ + G +G ++R +G WDLRK+ PY Y
Sbjct: 272 PKRIKEYHALLSGQPIWKGRMVDVNYIDAASCIALGVTGPVLRAAGLEWDLRKTVPYCGY 331
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+FD+P GD Y RYLVR+ EM ES+KI+ QC++RL K GPV +D KI P
Sbjct: 332 ETYEFDVPTSLDGDSYARYLVRLAEMGESLKIVEQCLDRL----KPGPVMVADKKIAWPA 387
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
R M SME+LIHHFKL TEG+ VP G+VY AVE+P+GE G ++
Sbjct: 388 QLSIGADGMGNSLDHIRTIMGTSMEALIHHFKLVTEGFRVPAGQVYTAVESPRGELGYHV 447
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +PYR +R P + +LQA+ + +G Q+ADV + S+D V G VDR
Sbjct: 448 VSDGGTRPYRVHVREPSFVNLQAVPAMTEGGQVADVIVGVASVDPVLGGVDR 499
>gi|57014017|ref|YP_173488.1| NADH dehydrogenase subunit 7 [Nicotiana tabacum]
Length = 394
Score = 412 bits (1058), Expect = e-113, Method: Composition-based stats.
Identities = 236/393 (60%), Positives = 299/393 (76%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
++ ++FT NFGPQHPAAHGV R +LE++GE+VER +PHIGLLHRGTEKLIE KT+LQA+P
Sbjct: 6 RQIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQALP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR DYV+ M QEHA++ AVE+LL E+P+R Q IRVL+ EI RI +H L +TT AMDV
Sbjct: 66 YSDRSDYVSMMAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRISNHSLALTTHAMDV 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP LW FEEREKL+ FYER SG+RMHA++ RPGGV QD+P L DI + F S
Sbjct: 126 GASTPFLWAFEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCIDIDSFTQQFASR 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
++++ ++ TGNRI+KQR V+IGTV + A WGFSGVM+RGSG WDLRK+ PY+ + +L
Sbjct: 186 IDELEEMSTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGSGVCWDLRKAAPYDVHDQL 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D DIP+G GD YDRY +R+ EMR+SV+II QC+N++ G + A D K+ PP R+
Sbjct: 246 DPDIPVGTRGDRYDRYCIRIEEMRQSVRIIVQCLNQM----PSGMIKADDRKLCPPSRSR 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK SMES IHHF+ YTEG+ VP Y AVEAPKGEFGV+L+S+G N+PYR KIRAPG+A
Sbjct: 302 MKLSMESSIHHFEPYTEGFSVPAPSTYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGFA 361
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H Q ++ + K H ADV I+G+ DIV GEVDR
Sbjct: 362 HSQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 394
>gi|258651219|ref|YP_003200375.1| NADH dehydrogenase subunit D [Nakamurella multipartita DSM 44233]
gi|258554444|gb|ACV77386.1| NADH dehydrogenase I, D subunit [Nakamurella multipartita DSM
44233]
Length = 459
Score = 411 bits (1057), Expect = e-113, Method: Composition-based stats.
Identities = 186/409 (45%), Positives = 246/409 (60%), Gaps = 19/409 (4%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ IN GPQHP+ HGVLRLILEL+GE V + IG LH G EK E +T+ Q V
Sbjct: 54 EHDERIIINMGPQHPSTHGVLRLILELEGETVVQARSVIGYLHTGIEKSCEYRTWTQGVT 113
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+ R DY++P E Y +AVEKLLGIE+P R Q+IRVL E+ RI SHL+ + T M++
Sbjct: 114 FVTRADYLSPAFNEAVYCMAVEKLLGIEVPERAQVIRVLLMELTRITSHLVALATGGMEL 173
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALT GF ERE+ + E +G RM+ A+ RPGGV QD+P E I +
Sbjct: 174 GALTGMTAGFREREEGLHLMEFLTGLRMNMAFIRPGGVAQDLPENATERIAAFIKIMEER 233
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L + LLTG I+K R V +G + LE G +G ++R +G WDLRK+ PY Y
Sbjct: 234 LPEYDKLLTGQPIWKARTVGVGLLPLEGCMQLGITGPILRSAGLPWDLRKTMPYCGYETY 293
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK--- 300
DF++P GDCY R+L+R+ E+ ES+KI++QC RL GPV DPKI P
Sbjct: 294 DFEVPTLTEGDCYARFLLRLAEIHESLKIMKQCNERLRQ---PGPVMVGDPKIGWPAQLS 350
Query: 301 -------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISD 347
R M +SMESLIHHFKL TEG+HVP G+ Y +E P+GE G +++S
Sbjct: 351 IGSDGMGNSLEYIRKIMGQSMESLIHHFKLVTEGFHVPAGQAYVGIENPRGELGCHVVSG 410
Query: 348 GGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GG +P+R +R PG+ +LQAM + +G +ADV A + S+D V G VDR
Sbjct: 411 GGTRPWRVHLRDPGFVNLQAMPAMSEGSMIADVVAAVASIDPVMGGVDR 459
>gi|224456275|ref|ZP_03664748.1| NADH dehydrogenase subunit D [Francisella tularensis subsp.
tularensis MA00-2987]
gi|254874052|ref|ZP_05246762.1| nuoD, NADH dehydrogenase I D subunit [Francisella tularensis subsp.
tularensis MA00-2987]
gi|254840051|gb|EET18487.1| nuoD, NADH dehydrogenase I D subunit [Francisella tularensis subsp.
tularensis MA00-2987]
Length = 412
Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats.
Identities = 225/410 (54%), Positives = 289/410 (70%), Gaps = 27/410 (6%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+++T+NFGP HPAAHGVLRLILELDGE V R DPH+GLLHRGTEKL E K + Q++ Y D
Sbjct: 5 KNYTLNFGPVHPAAHGVLRLILELDGENVVRADPHVGLLHRGTEKLAEFKPYNQSIGYMD 64
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYV+ M EHAY +A+EKLL +E+P R + IRV+++E+ RIL+HLL V +D+GA+
Sbjct: 65 RLDYVSMMCNEHAYVMAIEKLLQLEVPERAKYIRVMFAEMTRILNHLLWVAACGIDLGAM 124
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE------------------ 168
T L+ F RE L YE SG+RMHAAYFRPGGV +D+P +
Sbjct: 125 TVFLYAFRVREDLFDCYEAVSGARMHAAYFRPGGVARDLPTQMPQYQKTRFTSKRKAKKL 184
Query: 169 -------LVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVM 221
+++ + + F +L++I LLT NR++KQR V+IGTV E A GF+G M
Sbjct: 185 NEPRQGSMLDFLDHFVVDFEKSLDEIDTLLTDNRLWKQRTVDIGTVTAERAKELGFTGPM 244
Query: 222 IRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL 281
+RGSG AWDLRK+QPYE Y +L+FDIPIG +GDCYDRYLVRM EMRES K+I+QCV+ L
Sbjct: 245 LRGSGVAWDLRKTQPYEVYHKLEFDIPIGANGDCYDRYLVRMAEMRESNKLIKQCVDWL- 303
Query: 282 GKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFG 341
+ GPV + + K+ PPKR MK +ME LIHHFKL++EGY GEVY E PKGEFG
Sbjct: 304 -RANPGPVLSDNHKVAPPKRNAMKNNMEELIHHFKLFSEGYCTTEGEVYVGTEHPKGEFG 362
Query: 342 VYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVF 391
VY+ SDG NKPYR K+RAPG+AH+ AM+ L GH LAD AI+ ++D+ +
Sbjct: 363 VYIKSDGANKPYRLKMRAPGFAHISAMDELLSGHMLADTPAIISTIDVWY 412
>gi|16263284|ref|NP_436077.1| NuoD2 NADH I chain D [Sinorhizobium meliloti 1021]
gi|307318104|ref|ZP_07597540.1| NADH dehydrogenase I, D subunit [Sinorhizobium meliloti AK83]
gi|17380451|sp|P56908|NUOD2_RHIME RecName: Full=NADH-quinone oxidoreductase subunit D 2; AltName:
Full=NADH dehydrogenase I subunit D 2; AltName:
Full=NDH-1 subunit D 2
gi|14523961|gb|AAK65489.1| NuoD2 NADH:quinone oxidoreductase subunit 7 (chain D)
[Sinorhizobium meliloti 1021]
gi|306896145|gb|EFN26895.1| NADH dehydrogenase I, D subunit [Sinorhizobium meliloti AK83]
Length = 404
Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats.
Identities = 191/395 (48%), Positives = 253/395 (64%), Gaps = 5/395 (1%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ ++ +N GPQHP+ HGVLRL+L+LDGE VERVDPHIG LHRGTEKL E+ T+ Q
Sbjct: 13 EALNTKEVLLNLGPQHPSTHGVLRLVLQLDGEYVERVDPHIGYLHRGTEKLAESFTYTQI 72
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
P DRLDY+ P + A+ALAVEKLLGIE PIR Q IRV+ +E+ RI HLL M
Sbjct: 73 FPLTDRLDYLCPPSNNLAFALAVEKLLGIEAPIRAQYIRVMMAELARISGHLLITGALPM 132
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D+GA+T L+ ERE +M E +G+RMH +Y R GGV +D+P + I +C+ FP
Sbjct: 133 DLGAMTALLYAMREREMIMDLLEMITGARMHTSYCRVGGVREDLPDGFLPKIREFCEIFP 192
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+ + D L+ NR+F R +G + DA G SG +R SG WD+R+ +PYE Y
Sbjct: 193 NRIRDYERLIENNRVFLSRTQGVGVISATDAIDLGLSGPNLRASGVDWDIRRDEPYEIYD 252
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK- 300
LDFD+ + GDCY R+L R+ EMRES+++I QC+ ++ GP P I P
Sbjct: 253 RLDFDVITREEGDCYSRWLCRVDEMRESIRLIEQCMEQM----PEGPFQVDIPTIAFPVD 308
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ + SME+LI HF L G+ VP GEVY+ +EAPKGE G Y+ISDG KP+R K+RAP
Sbjct: 309 KERVHCSMEALIQHFDLSAYGFDVPAGEVYSVIEAPKGELGFYIISDGSPKPFRMKVRAP 368
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ +LQA+ + LAD+ A+LGSLD V EVD
Sbjct: 369 SFVNLQALFGVTNARYLADMIAVLGSLDPVMAEVD 403
>gi|229891282|sp|A8Z6E5|NUOD_CAMC1 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|158604902|gb|ABW74726.1| NADH dehydrogenase (quinone), d subunit [Campylobacter concisus
13826]
Length = 409
Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats.
Identities = 178/394 (45%), Positives = 249/394 (63%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++ +NFGPQHP+AHG L+L+LELDGE V R P +G +HRG EK+ E T+ + +
Sbjct: 18 EQNDGKMILNFGPQHPSAHGQLKLVLELDGEKVVRAMPEVGFMHRGVEKMAENMTYQEFI 77
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DR+DY+A +A+ AVEKL IE+P R Q+IRV+ E+ RI SHLL + T A+D
Sbjct: 78 PVTDRVDYIASSANNYAFCAAVEKLCAIEVPRRAQIIRVMLLELNRISSHLLFLATHALD 137
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA++ L+ F ERE ++ E+ G+R+ + R GGV D+P E++ +C+ FPS
Sbjct: 138 VGAMSVFLYAFREREYVLDLIEKYCGARLTHSSIRIGGVPLDLPDGWCEELLKFCEKFPS 197
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ DLL+ NRI++ R +++G V E A G SGVM+R SG A D+RK +PY Y E
Sbjct: 198 DITLYEDLLSANRIWQARLIDVGVVSKELALSSGCSGVMLRASGIARDIRKEEPYLIYDE 257
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
L+FD+P GDCY RYL+ M EMRE VKI++QCV++ + + A P+ V +
Sbjct: 258 LEFDVPYATKGDCYARYLLYMKEMRECVKILKQCVSKYQTSSPA--IIADAPEYVSASKE 315
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ SL+ HF L T+G P GE+Y A E+PKGE G+Y+ SDG PYR KIR P +
Sbjct: 316 QIMSQNYSLMQHFVLITQGLKPPKGEIYFASESPKGELGIYINSDGSASPYRLKIRTPSF 375
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H E + G +ADV+AI+GS +I+ GEVDR
Sbjct: 376 WHCAIYEDMLVGQYVADVAAIIGSTNIILGEVDR 409
>gi|312076864|ref|XP_003141051.1| hypothetical protein LOAG_05466 [Loa loa]
gi|307763786|gb|EFO23020.1| hypothetical protein LOAG_05466 [Loa loa]
Length = 475
Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats.
Identities = 222/394 (56%), Positives = 288/394 (73%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+K + +NFGPQHPAAHGVLRLILELD E+V + PH+GLLHR TEKLIE KT+ QAV
Sbjct: 86 EKPLHYYLLNFGPQHPAAHGVLRLILELDNEVVMKATPHVGLLHRATEKLIEYKTYTQAV 145
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDY+ + E +ALAVEKLLGIEIP R + IR L++E+ R+ +H ++ T A+D
Sbjct: 146 PYFDRLDYITMLTNEQGFALAVEKLLGIEIPPRAKWIRTLFAELNRLANHAFSIVTHALD 205
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA+TP W FEEREKL F ER SG+RMH Y RPGGV D+P L++DI W FP
Sbjct: 206 IGAMTPLFWMFEEREKLFEFNERVSGARMHVNYIRPGGVGWDLPLGLLDDIYDWAIQFPQ 265
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++ + D+LT NR++K R +IG + DA GFSGVM+RGSG +D+RK+QPYE Y +
Sbjct: 266 RIDTMEDMLTDNRLWKSRTRDIGLISAADAQSLGFSGVMLRGSGVKYDVRKAQPYEAYDQ 325
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++FDIP+G GDCYDRYL R+ EMR+S+KI+ C+N++ G + D KIVPPKRA
Sbjct: 326 IEFDIPVGTKGDCYDRYLCRLEEMRQSLKIVLDCLNKM----PSGEIKVDDHKIVPPKRA 381
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SMESLIHHFK ++EGY VP G Y +EAP GE+G Y+++DG +KPYRC IR PG+
Sbjct: 382 EMKNSMESLIHHFKFFSEGYQVPSGSCYVPIEAPNGEYGTYVVADGTSKPYRCFIRGPGF 441
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL + L ++DV A++G++DIVFGEVDR
Sbjct: 442 AHLAGLHDLTYMSLISDVVAVIGTMDIVFGEVDR 475
>gi|302543441|ref|ZP_07295783.1| NADH dehydrogenase (quinone), D subunit [Streptomyces hygroscopicus
ATCC 53653]
gi|302461059|gb|EFL24152.1| NADH dehydrogenase (quinone), D subunit [Streptomyces
himastatinicus ATCC 53653]
Length = 447
Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats.
Identities = 182/407 (44%), Positives = 248/407 (60%), Gaps = 22/407 (5%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
+N GPQHP+ HGVLRLILE+DGE V IG LH G EK +E + + Q + R
Sbjct: 45 RIIVNMGPQHPSTHGVLRLILEIDGETVTEARCGIGYLHTGIEKNLEFRNWTQGTTFVTR 104
Query: 68 LDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
+DY+ P + E AY L VEKLLGIE IP R +IRVL E+ RI SHL+ + T M++GA
Sbjct: 105 MDYLTPFSNEAAYCLGVEKLLGIEDQIPDRATIIRVLMMELNRISSHLVCIATGGMELGA 164
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
T ++GF +RE ++ YE +G RM+ AY RPGG+ QD+PP V+ I + + L
Sbjct: 165 TTVMIYGFRDRELVLDLYELITGLRMNHAYIRPGGLAQDLPPGAVDQIRAFLKTMRKNLV 224
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ L TGN IFK R ++G + L G +G ++R +G DLRK+QPY Y DF
Sbjct: 225 EYDKLATGNPIFKARLQDVGYLDLAGCMALGVTGPILRSTGLPHDLRKAQPYCGYETYDF 284
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK----- 300
++P D Y R+L+R+ EMR+S++I+ QC++RL + GPV +D KI P
Sbjct: 285 EVPTADTCDAYGRFLIRLEEMRQSLRIVEQCLDRL----EPGPVMVADKKIAWPAQLALG 340
Query: 301 -----------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGG 349
+ M SME+LIHHFKL TEG+ VP G+ Y AVE+PKGE GV++ SDGG
Sbjct: 341 ADGLGNSLDHIKNIMGTSMEALIHHFKLVTEGFRVPPGQTYVAVESPKGELGVHMASDGG 400
Query: 350 NKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+PYR R P + +LQA+ +C+G Q+ADV + S+D V G VDR
Sbjct: 401 TRPYRVHFRDPSFTNLQAVAAMCEGGQVADVIVAVASIDPVMGGVDR 447
>gi|271962158|ref|YP_003336354.1| NADH dehydrogenase (quinone) [Streptosporangium roseum DSM 43021]
gi|270505333|gb|ACZ83611.1| NADH dehydrogenase (quinone) [Streptosporangium roseum DSM 43021]
Length = 441
Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats.
Identities = 182/414 (43%), Positives = 244/414 (58%), Gaps = 18/414 (4%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ ++ IN GPQHP+ HGVLRL+L LDGE V IG LH G EK IE +T+ Q
Sbjct: 28 LSGQQDEQLVINMGPQHPSTHGVLRLVLNLDGETVTEARTVIGYLHTGIEKNIEYRTWTQ 87
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTT 118
+ R+DY+AP+ E AY + VEKLLGI IP R Q IRV+ E+ RI SH++ + T
Sbjct: 88 GTTFVTRMDYLAPIFNETAYCMGVEKLLGITDRIPERAQAIRVMMMELTRISSHMVAIGT 147
Query: 119 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
M++GA TP L+G ERE ++ E +G RM+ AY RPGGV D+P V+ +G
Sbjct: 148 FGMELGATTPFLFGSREREMVLDVMEYITGLRMNMAYVRPGGVSVDLPAGAVDKVGELLK 207
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
P + D+ +L N ++ R ++ + L G +G M+R +G WDLRKSQPY
Sbjct: 208 VMPGRIKDMRKMLDANPVYLARTKDVAYLDLTGCMALGVTGPMLRAAGLPWDLRKSQPYC 267
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
Y +FD+P K D Y RYLVR+ EM ES+KII Q ++RL G K G V D KI
Sbjct: 268 GYETYEFDVPTEKTADVYGRYLVRVAEMEESLKIIEQALDRLSGPLKGGRVMVDDKKIGW 327
Query: 299 PK----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGV 342
P M SME+LIHHFKL TEG+ VP G+ +A+VE+P+GE G
Sbjct: 328 PAQLALGPDGLGNSPDHIAHIMSGSMEALIHHFKLVTEGFRVPAGQAFASVESPRGELGA 387
Query: 343 YLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+++SDGG +PYR R P + +LQAM C+G +ADV + + S+D V G VDR
Sbjct: 388 HVVSDGGTRPYRVHFRDPSFTNLQAMPATCEGGMVADVISAVASIDPVMGGVDR 441
>gi|282860722|ref|ZP_06269788.1| NADH dehydrogenase I, D subunit [Streptomyces sp. ACTE]
gi|282564458|gb|EFB69994.1| NADH dehydrogenase I, D subunit [Streptomyces sp. ACTE]
Length = 440
Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats.
Identities = 179/412 (43%), Positives = 250/412 (60%), Gaps = 22/412 (5%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K +N GPQHP+ HGVLRLILE+DGE V+ IG LH G EK +E +++ Q
Sbjct: 33 KADDERIIVNMGPQHPSTHGVLRLILEIDGETVQEARCGIGYLHTGIEKNLEFRSWTQGT 92
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R+DY+ P E AY L VEKLLGIE IP R ++RVL E+ RI SHL+ V T
Sbjct: 93 TFVTRMDYLTPFFNEAAYCLGVEKLLGIEDQIPDRATVLRVLLMELNRISSHLVCVATGG 152
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
M++GA T ++GF +RE ++ +E +G RM+ A+ RPGG+ QD+PP V+ I + +
Sbjct: 153 MELGATTIMIYGFRDRELVLDLFEMITGLRMNHAFIRPGGLAQDLPPGAVDRIREFITTM 212
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L + L TGN IFK R ++G + L G +G ++R +G DLR++ PY Y
Sbjct: 213 RKNLPEYDKLATGNPIFKARMQDVGYLDLAGCMALGATGPVLRSAGLPHDLRRTDPYCGY 272
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
DF++P D Y R+L+R+ EMR+S++I+ QC++RL + GPV +D KI P
Sbjct: 273 ETYDFEVPTADTCDAYGRFLIRLEEMRQSLRIVEQCLDRL----EPGPVMVADKKIAWPA 328
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
R M SME+LIHHFKL TEG+ VP G+ Y A+E+PKGE GV++
Sbjct: 329 QLALGPDGLGNSLDHIRNIMGTSMEALIHHFKLVTEGFRVPPGQTYTALESPKGELGVHV 388
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +P+R R P + +LQAM +C+G Q+ADV + S+D V G VDR
Sbjct: 389 VSDGGTRPFRVHFRDPSFTNLQAMAAMCEGGQVADVIVAVASIDPVMGGVDR 440
>gi|229490893|ref|ZP_04384728.1| NADH dehydrogenase, d subunit [Rhodococcus erythropolis SK121]
gi|229322283|gb|EEN88069.1| NADH dehydrogenase, d subunit [Rhodococcus erythropolis SK121]
Length = 443
Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats.
Identities = 175/410 (42%), Positives = 246/410 (60%), Gaps = 22/410 (5%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGVLRLILE++GE V IG LH G EK +E + + Q V +
Sbjct: 38 EAERIVVNMGPQHPSTHGVLRLILEIEGETVVEARCGIGYLHTGIEKNLEYRNWTQGVTF 97
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
R+DY++P E AY L VEKLL I +IP R +IRV+ E+ RI SHL+ + T M+
Sbjct: 98 VTRMDYLSPFFNETAYCLGVEKLLDITDDIPERATVIRVMMMELNRISSHLVALATGGME 157
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA+T L+GF ERE ++ +E +G RM+ AY RPGG+ QD+P V + P
Sbjct: 158 LGAVTAMLFGFRERELILDVFETITGLRMNHAYIRPGGLAQDLPDGSVAKVRELLKVLPK 217
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L D+ +L+ N I+K R IG + L G +G ++R +G D R++QPY Y
Sbjct: 218 RLRDVELMLSDNSIWKARTQGIGYLDLTGCMALGVTGPVLRATGLPHDQRRAQPYCGYEN 277
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK-- 300
+FD+ DCY RY++R+ EM+ES+KI+ QC+++L + GPV D KI P
Sbjct: 278 YEFDVVTHDGSDCYGRYVIRVEEMKESLKIVEQCLDKL----QPGPVMVDDKKIAWPADL 333
Query: 301 --------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLIS 346
M+ SME LIHHFKL TEG VP G+VY AVE+P+GE GV+++S
Sbjct: 334 AVGPDGLGNSQKHIAKIMESSMEGLIHHFKLVTEGIRVPPGQVYVAVESPRGELGVHMVS 393
Query: 347 DGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
DGG +PYR R P + +LQA+ +C+G ++DV A + S+D V G VDR
Sbjct: 394 DGGTRPYRVHFRDPSFTNLQAVAAMCEGGMVSDVIASVASIDPVMGGVDR 443
>gi|5650747|emb|CAB51632.1| putative NADH-ubiquinone oxidoreductase subunit [Sinorhizobium
meliloti]
Length = 404
Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats.
Identities = 187/394 (47%), Positives = 250/394 (63%), Gaps = 3/394 (0%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ ++ +N GPQHP+ HGVLRL+L+LDGE VERVDPHIG LHRGTEKL E+ T+ Q
Sbjct: 13 EALNTKEVLLNLGPQHPSTHGVLRLVLQLDGEYVERVDPHIGYLHRGTEKLAESFTYTQI 72
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
P DRLDY+ P + A+ALAVEKLLGIE PIR Q IRV+ +E+ RI HLL M
Sbjct: 73 FPLTDRLDYLCPPSNNLAFALAVEKLLGIEAPIRAQYIRVMMAELARISGHLLITGALPM 132
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D+GA+T L+ ERE +M E +G+RMH +Y R GGV +D+P + I +C+ FP
Sbjct: 133 DLGAMTALLYAMREREMIMDLLEMITGARMHTSYCRVGGVREDLPDGFLPKIREFCEIFP 192
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+ + D L+ NR+F R +G + DA G SG +R SG WD+R+ +PYE Y
Sbjct: 193 NRIRDYERLIENNRVFLSRTQGVGVISATDAIDLGLSGPNLRASGVDWDIRRDEPYEIYD 252
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
LDFD+ + GDCY R+L R+ EMRES+++I QC+ ++ + P +
Sbjct: 253 RLDFDVITREEGDCYSRWLCRVDEMRESIRLIEQCMEQMPEGAFQVDIPTIAF---PVDK 309
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ SME+LI HF L G+ VP GEVY+ +EAPKGE G Y+ISDG KP+R K+RAP
Sbjct: 310 ERVHCSMEALIQHFDLSAYGFDVPAGEVYSVIEAPKGELGFYIISDGSPKPFRMKVRAPS 369
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ +LQA+ + LAD+ A+LGSLD V EVD
Sbjct: 370 FVNLQALFGVTNARYLADMIAVLGSLDPVMAEVD 403
>gi|150375771|ref|YP_001312367.1| NADH dehydrogenase I, D subunit [Sinorhizobium medicae WSM419]
gi|218534372|sp|A6UFK4|NUOD2_SINMW RecName: Full=NADH-quinone oxidoreductase subunit D 2; AltName:
Full=NADH dehydrogenase I subunit D 2; AltName:
Full=NDH-1 subunit D 2
gi|150030318|gb|ABR62434.1| NADH dehydrogenase I, D subunit [Sinorhizobium medicae WSM419]
Length = 404
Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats.
Identities = 191/395 (48%), Positives = 253/395 (64%), Gaps = 5/395 (1%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ ++ +N GPQHP+ HGVLRL+L+LDGE VER+DPHIG LHRGTEKL E+ T+ Q
Sbjct: 13 EALNTKEVLLNLGPQHPSTHGVLRLVLQLDGEYVERIDPHIGYLHRGTEKLAESFTYTQI 72
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
P DRLDY+ P + A+ALAVEKLLGIE PIR Q IRV+ +E+ RI HLL M
Sbjct: 73 FPLTDRLDYLCPPSNNLAFALAVEKLLGIEAPIRAQYIRVMMAELARISGHLLITGALPM 132
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D+GA+T L+ ERE +M E +G+RMH +Y R GGV +D+P + I +C+ FP
Sbjct: 133 DLGAMTALLYAMREREMIMDLLEMITGARMHTSYCRVGGVREDLPDGFLPKIREFCEIFP 192
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+ + D L+ NR+F R IG + DA G SG +R SG WD+R+ +PYE Y
Sbjct: 193 NRIRDYERLIENNRVFLSRTQGIGVISAADAVDLGLSGPNLRASGVDWDIRRDEPYEIYD 252
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK- 300
LDFD+ + GDCY R+L R+ EMRES+++I QC+ ++ GP P I P
Sbjct: 253 RLDFDVITREEGDCYARWLCRVDEMRESIRLIEQCMEQM----PEGPFQVDIPTIAFPVD 308
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ + SME+LI HF L G+ VP GEVY+ +EAPKGE G Y+ISDG KP+R K+RAP
Sbjct: 309 KERVHCSMEALIQHFDLSAYGFDVPAGEVYSVIEAPKGELGFYIISDGSPKPFRMKVRAP 368
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ +LQA+ + LAD+ A+LGSLD V EVD
Sbjct: 369 SFVNLQALFGVTNARYLADMIAVLGSLDPVMAEVD 403
>gi|226365383|ref|YP_002783166.1| NADH dehydrogenase subunit D [Rhodococcus opacus B4]
gi|226243873|dbj|BAH54221.1| NADH-quinone oxidoreductase chain D [Rhodococcus opacus B4]
Length = 438
Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats.
Identities = 181/408 (44%), Positives = 245/408 (60%), Gaps = 22/408 (5%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GPQHP+ HGVLRLILE++GE V IG LH G EK +E + + Q V +
Sbjct: 35 ERIVVNMGPQHPSTHGVLRLILEIEGETVTEARCGIGYLHTGIEKNLEYRNWTQGVTFVT 94
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
R+DY++P E AY L VEKLL I +P R +IRV+ E+ RI SHL+ + T M++G
Sbjct: 95 RMDYLSPFFNETAYCLGVEKLLDITEQVPDRASVIRVMLMELNRISSHLVALATGGMELG 154
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A+T L+GF ERE ++ +E +G RM+ AY RPGG+ QD+P V + P L
Sbjct: 155 AVTAMLFGFRERELVLDVFEFITGLRMNHAYIRPGGLSQDLPEGAVAKVRELLTVLPERL 214
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
D+ +LL NRI+K R IG + L G +G M+R +G DLRKSQPY Y +
Sbjct: 215 RDMENLLNENRIWKGRTEGIGYLDLTGCMALGITGPMLRATGLPHDLRKSQPYCGYENYE 274
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK---- 300
F++ D Y RYL+R+ EM+ES+KI+ QC+++L GP+ A D KI P
Sbjct: 275 FEVSTDTGCDAYGRYLIRVDEMKESLKIVEQCLDKLR----PGPIMAEDKKIAWPADLTL 330
Query: 301 ------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG 348
R M SMESLIHHFKL TEG+ VP G+VY AVE+P+GE GV+++SDG
Sbjct: 331 GPDGLGNSPGHVREIMDSSMESLIHHFKLVTEGFRVPPGQVYVAVESPRGELGVHMVSDG 390
Query: 349 GNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G +PYR R P + +LQ++ C+G +ADV A + S+D V G VDR
Sbjct: 391 GTRPYRVHFRDPSFTNLQSVAATCEGGMVADVIAAVASIDPVMGGVDR 438
>gi|288917186|ref|ZP_06411555.1| NADH dehydrogenase I, D subunit [Frankia sp. EUN1f]
gi|288351377|gb|EFC85585.1| NADH dehydrogenase I, D subunit [Frankia sp. EUN1f]
Length = 465
Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats.
Identities = 184/412 (44%), Positives = 250/412 (60%), Gaps = 22/412 (5%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ T+N GPQHP+ HGVLRL+LE++GE V IG LH G EK E +T+ QAV
Sbjct: 58 ESDGERITVNMGPQHPSTHGVLRLVLEIEGETVTETRIVIGYLHTGIEKSCEYRTWTQAV 117
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R DY++P+ E AY L+VEKLLGI E+P R +IRVL E+ RI SHL+ + T
Sbjct: 118 TFLTRADYLSPLYNEAAYCLSVEKLLGITDEVPERATVIRVLVMELQRIASHLVWLATGG 177
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
M++GA T ++GF EREK++ E +G RM+ AY RPGG+ QDIP E + I +
Sbjct: 178 MELGATTGMIFGFREREKILDLLELITGLRMNHAYIRPGGLAQDIPDEAIPRIREFLVDM 237
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P + + LLTG I+K R V++ + G +G ++R +G WDLRK+ PY Y
Sbjct: 238 PKRIREYHALLTGQPIWKARMVDVNFLDAAACIALGTTGPVLRAAGLPWDLRKTMPYCGY 297
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
DFD+P GD Y RYLVR+ EM ES+KII QC++RL GPV +D KI P
Sbjct: 298 ETYDFDVPTALEGDSYARYLVRLEEMGESLKIIEQCLDRLR----PGPVMVADKKIAWPS 353
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
R M SME+LIHHFKL TEG+ VP G+VY +E+P+GE G ++
Sbjct: 354 QLSIGSDGMGNSLDHIRKIMGTSMEALIHHFKLVTEGFRVPAGQVYTQIESPRGELGYHV 413
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +P+R +R P + +LQA+ + +G Q+ADV + S+D V G VDR
Sbjct: 414 VSDGGTRPFRVHVRDPSFVNLQAVPAMTEGGQVADVIVGVASVDPVLGGVDR 465
>gi|54606714|dbj|BAD66737.1| NADH dehydrogenase subunit 7 [Beta vulgaris subsp. vulgaris]
gi|54606758|dbj|BAD66781.1| NADH dehydrogenase subunit 7 [Beta vulgaris subsp. vulgaris]
Length = 391
Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats.
Identities = 238/393 (60%), Positives = 300/393 (76%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
++ ++FT+NFGPQHPAAHGV RL+LE++GE+VER +PHIGLLHRGTEKLIE KT+LQA+P
Sbjct: 3 RQIKNFTLNFGPQHPAAHGVSRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQALP 62
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M QEHA++ AVE+LL E+P+R Q IRVL+ EI RI +H L +TT AMDV
Sbjct: 63 YFDRLDYVSMMAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRISNHSLALTTHAMDV 122
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP LW FEEREKL+ FYER G+RMHA++ RPGGV QD+P L DI F S
Sbjct: 123 GALTPFLWAFEEREKLLEFYERVPGARMHASFIRPGGVAQDLPLGLCRDIDSSTQQFASR 182
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
++++ ++ TGNRI+KQR V+IGTV + A WGFSGVM+RG G WDLR++ PY+ Y +L
Sbjct: 183 IDELEEMSTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGPGVCWDLRRAAPYDVYDQL 242
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DFD+P+G GD YDRY +R+ EMR+SV+II QC+N++ G + A D K+ PP R
Sbjct: 243 DFDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQCLNQM----PSGMIKADDRKLCPPSRYR 298
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK SMES IHHF+ YTEG+ VP Y AVEAPKGEFGV+L+S+G N+PYR KIRAPG A
Sbjct: 299 MKLSMESSIHHFEPYTEGFSVPAPSTYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGSA 358
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H Q ++ + K H ADV I+G+ DIV GEVDR
Sbjct: 359 HSQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 391
>gi|81176545|ref|YP_398427.1| nad7 [Triticum aestivum]
gi|485862|emb|CAA52952.1| NADH dehydrogenase [Triticum aestivum]
gi|78675269|dbj|BAE47694.1| nad7 [Triticum aestivum]
gi|169649078|gb|ACA62639.1| nad7 [Triticum aestivum]
gi|291498633|gb|ADE08107.1| nad7-1 [Triticum aestivum]
gi|291498634|gb|ADE08108.1| nad7-2 [Triticum aestivum]
Length = 394
Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats.
Identities = 233/392 (59%), Positives = 294/392 (75%), Gaps = 4/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ ++FT N GPQHPAAHGV R +LE++GE+VER +PHIG LHRGTEKLIE KT+LQA+PY
Sbjct: 7 QIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGSLHRGTEKLIEYKTYLQALPY 66
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
FDRLDYV+ M QEHA++ AVE+LL E+P+R Q IRVL+ EI RI +H L TT AMDVG
Sbjct: 67 FDRLDYVSTMAQEHAHSSAVERLLNCEVPLRAQYIRVLFCEITRISNHSLASTTHAMDVG 126
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A TP LW FEEREKL+ FYER G+RMHA++ RPGGV QD+P L DI F S +
Sbjct: 127 ASTPFLWAFEEREKLLEFYERVPGARMHASFIRPGGVAQDLPLGLCRDIDSSTQQFASRI 186
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+++ ++ TGNRI+KQR V+IGTV + A WGFSGVM+RG G WD R++ PY+ + + D
Sbjct: 187 DELEEMSTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGPGVCWDSRRAAPYDVHDQSD 246
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
D+P+G GD YDRY +R+ EMR+SV+II QC N++ G + A D K+ PP R+ M
Sbjct: 247 LDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQCPNQM----PSGMIKADDRKLCPPSRSRM 302
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K SMES IHHF+LYTEG+ VP Y AVEAPKGEFGV+L+S+G N+PYRCKIRAPG+AH
Sbjct: 303 KLSMESSIHHFELYTEGFSVPAPSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAH 362
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Q ++ + K H ADV I+G+ DIVFGEVDR
Sbjct: 363 SQGLDSMSKHHMPADVVTIIGTQDIVFGEVDR 394
>gi|57505813|ref|ZP_00371738.1| NADH dehydrogenase I, D subunit [Campylobacter upsaliensis RM3195]
gi|57015843|gb|EAL52632.1| NADH dehydrogenase I, D subunit [Campylobacter upsaliensis RM3195]
Length = 408
Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats.
Identities = 173/394 (43%), Positives = 239/394 (60%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++ IN GPQHP+AHG LRLILELDGE V + P IG +HRG EK+ E + + +
Sbjct: 17 ERDDAKMIINLGPQHPSAHGNLRLILELDGEQVTKARPCIGYMHRGMEKMAENMIYQEFI 76
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DR+DY+A +AY AVEKL G+EIP R +IR++ E+ RI SHLL + T A+D
Sbjct: 77 PTTDRMDYIAASANNYAYCAAVEKLCGLEIPRRAAVIRMILLELNRIASHLLWLATHALD 136
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA++ L+ F ERE ++ ER G+R+ + R GGV D+P ++++ +C FP+
Sbjct: 137 IGAMSVFLYCFREREYVLDLIERYCGARLTHSSMRIGGVMLDLPDGFLDELLAFCAKFPN 196
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ D LL NRI++ R N+G V E A WG SGVM+RGSG +D+RK +PY Y E
Sbjct: 197 DVKDYEALLDDNRIWRLRTENVGLVTKEQAMNWGCSGVMLRGSGVCYDIRKEEPYLLYDE 256
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+DF +P GD Y RY + M E RES+KI+ QCV + A+ P+ V +
Sbjct: 257 VDFGVPYASQGDSYARYKIYMQEFRESLKILTQCVKLYKNTPPE--ILANHPEYVSASKE 314
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ SL+ HF L T+G P GEVY E+PKGE G ++ SDG +PYR K R P +
Sbjct: 315 QIMTQNYSLMQHFVLVTQGLKPPKGEVYVPTESPKGELGFFIHSDGTGRPYRLKARTPSF 374
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H E + G LADV AI+G+++IV GE+DR
Sbjct: 375 WHCAFFEEMLVGSYLADVVAIMGNVNIVLGEIDR 408
>gi|297159511|gb|ADI09223.1| NADH dehydrogenase subunit D [Streptomyces bingchenggensis BCW-1]
Length = 444
Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats.
Identities = 176/412 (42%), Positives = 246/412 (59%), Gaps = 22/412 (5%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GPQHP+ HGVLRLILE+DGE V IG LH G EK +E + + Q
Sbjct: 37 RADDERIIVNMGPQHPSTHGVLRLILEIDGETVTEARCGIGYLHTGIEKNLEFRNWTQGT 96
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R+DY+ P E AY L VEKLLGIE +P R +IRV+ E+ R+ SHL+ + T
Sbjct: 97 TFVTRMDYLTPFYNEAAYCLGVEKLLGIEDQVPDRASVIRVMLMELNRLSSHLVAIATGG 156
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
M++GA T ++GF +RE ++ +E +G RM+ AY RPGG+ QD+PP V+ + +
Sbjct: 157 MELGATTIMIYGFRDREMILDIFELITGLRMNHAYIRPGGLAQDLPPGAVDQVRAFVKKM 216
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L + L TGN IFK R ++G + L G +G ++R +G DLRK+QPY Y
Sbjct: 217 RKNLPEYDKLATGNPIFKARLQDVGYLDLAGCMALGITGPILRATGLPHDLRKAQPYCGY 276
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
DFD+P D Y R+L+R+ EMR+S++I+ QC++RL GPV D KI P
Sbjct: 277 ETYDFDVPTADTCDAYGRFLIRLEEMRQSLRIVEQCLDRLA----PGPVMVEDKKIAWPA 332
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
+ M SME+LIHHFKL TEG+ VP G+ Y AVE+PKGE GV++
Sbjct: 333 QLSLGPDGLGNSLDHIKKIMGTSMEALIHHFKLVTEGFRVPPGQTYTAVESPKGELGVHM 392
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +P+R R P + +LQ++ +C+G Q+ADV + S+D V G VDR
Sbjct: 393 VSDGGTRPFRVHFRDPSFTNLQSVAAMCEGGQVADVIVAVASIDPVMGGVDR 444
>gi|307304397|ref|ZP_07584148.1| NADH dehydrogenase I, D subunit [Sinorhizobium meliloti BL225C]
gi|306902599|gb|EFN33193.1| NADH dehydrogenase I, D subunit [Sinorhizobium meliloti BL225C]
Length = 404
Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats.
Identities = 191/395 (48%), Positives = 254/395 (64%), Gaps = 5/395 (1%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ ++ +N GPQHP+ HGVLRL+L+LDGE VERVDPHIG LHRGTEKL E+ T+ Q
Sbjct: 13 EALNTKEVLLNLGPQHPSTHGVLRLVLQLDGEYVERVDPHIGYLHRGTEKLAESFTYTQI 72
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
P DRLDY+ P + A+ALAVEKLLGIE PIR Q IRV+ +E+ RI HLL M
Sbjct: 73 FPLTDRLDYLCPPSNNLAFALAVEKLLGIEAPIRAQYIRVMMAELARISGHLLITGALPM 132
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D+GA+T L+ ERE +M E +G+RMH +Y R GGV +D+P ++ I +C+ FP
Sbjct: 133 DLGAMTALLYAMREREMIMDLLEMITGARMHTSYCRVGGVREDLPDGVLPKIREFCEIFP 192
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+ + D L+ NR+F R +G + DA G SG +R SG WD+R+ +PYE Y
Sbjct: 193 NRIRDYERLIENNRVFLSRTQGVGVISATDAIDLGLSGPNLRASGVDWDIRRDEPYEIYD 252
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK- 300
LDFD+ + GDCY R+L R+ EMRES+++I QC+ ++ GP P I P
Sbjct: 253 RLDFDVITREEGDCYSRWLCRVDEMRESIRLIEQCMEQM----PEGPFQVDIPTIAFPVD 308
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ + SME+LI HF L G+ VP GEVY+ +EAPKGE G Y+ISDG KP+R K+RAP
Sbjct: 309 KERVHCSMEALIQHFDLSAYGFDVPAGEVYSVIEAPKGELGFYIISDGSPKPFRMKVRAP 368
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ +LQA+ + LAD+ A+LGSLD V EVD
Sbjct: 369 SFVNLQALFGVTNARYLADMIAVLGSLDPVMAEVD 403
>gi|117927479|ref|YP_872030.1| NADH dehydrogenase subunit D [Acidothermus cellulolyticus 11B]
gi|218534377|sp|A0LRI4|NUOD_ACIC1 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|117647942|gb|ABK52044.1| NADH dehydrogenase subunit D [Acidothermus cellulolyticus 11B]
Length = 440
Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats.
Identities = 194/414 (46%), Positives = 258/414 (62%), Gaps = 22/414 (5%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + +N GPQHP+ HGVLRL+LEL+GE V + +G LH G EK E +T+ Q
Sbjct: 31 IADRHPDRIVVNMGPQHPSTHGVLRLVLELEGETVTQARVVVGYLHTGIEKNCEYRTYTQ 90
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTT 118
AV + R DY++P+ E AY LAVEKLLGI IP R +IRV+ E+ RI SHL+ + T
Sbjct: 91 AVTFLTRADYLSPLFTETAYCLAVEKLLGITDQIPERANVIRVMMMELNRIASHLVWLAT 150
Query: 119 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
M++GAL+ L+GF ERE ++ +E +G RM+ AY RPGGV QD+PP VE I + D
Sbjct: 151 GGMEIGALSAMLYGFREREMILDIFEMITGLRMNHAYIRPGGVIQDLPPGAVEKIREFLD 210
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
P+ +++ DLLTG I+ +R +G + L A G +G ++R +G WDLRK PY
Sbjct: 211 IMPARIDEYHDLLTGQPIWVRRLKGVGYLDLTGAVALGATGPIMRAAGYPWDLRKVAPYC 270
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
Y DF++P GDC+ RYLVRM EMRES+KII QC++RL GPV D KI
Sbjct: 271 GYETYDFEVPTQTDGDCFARYLVRMDEMRESLKIIEQCLDRLR----PGPVMVEDKKIAW 326
Query: 299 PK----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGV 342
P R M SME+LIHHFKL TEG+HVP G+VY VE+P+GE GV
Sbjct: 327 PAKLALGPDGMGNSLDHIRHIMATSMEALIHHFKLVTEGFHVPPGQVYVPVESPRGELGV 386
Query: 343 YLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L+SDGG KPYR +R P + +LQ + +C+G +ADV A + S+D V G DR
Sbjct: 387 HLVSDGGTKPYRVHLREPSFVNLQTVAAVCEGGMVADVIAAVASIDPVMGGCDR 440
>gi|305432372|ref|ZP_07401534.1| NADH-quinone oxidoreductase subunit D [Campylobacter coli JV20]
gi|304444411|gb|EFM37062.1| NADH-quinone oxidoreductase subunit D [Campylobacter coli JV20]
Length = 408
Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats.
Identities = 174/394 (44%), Positives = 240/394 (60%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ IN GPQHP+AHG LRLILELDGE V + P IG +HRG EK+ E + + +
Sbjct: 17 EQEDSKMIINLGPQHPSAHGNLRLILELDGEQVVKARPTIGYMHRGMEKMAENMIYQEFI 76
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DR+DY+A +AY AVEKL G+EIP R +IR++ E+ RI SHLL + T A+D
Sbjct: 77 PTTDRMDYIAASANNYAYCAAVEKLCGLEIPRRAAVIRMILLELNRIASHLLWLATHALD 136
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA++ L+ F ERE ++ E+ G+R+ + R GGV D+P + ++ +CD FP
Sbjct: 137 IGAMSVFLYCFREREYVLDLIEKYCGARLTHSSMRIGGVMLDLPEGFLNELLAFCDKFPK 196
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ D LL NRI++ R N+G V E A WG +GVM+RGSG +D+RK +PY Y+E
Sbjct: 197 DIADYEALLDDNRIWRLRTENVGVVSKEQAMNWGCTGVMLRGSGVRYDIRKEEPYLLYNE 256
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+DF +P GD Y RY V M E RES+KI+RQC + A+ P+ V +
Sbjct: 257 IDFGVPYATQGDSYARYKVYMQEFRESLKILRQCAALYKDTPPE--ILANHPEYVSASKE 314
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ SL+ HF L T+G P GEVY E+PKGE G ++ SDG +PYR K R P Y
Sbjct: 315 QILTQNYSLMQHFVLITQGLKPPKGEVYVPTESPKGELGFFIHSDGTGRPYRLKARTPSY 374
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H E + G LADV AI+G+++IV GE+DR
Sbjct: 375 WHCAFFEEMLVGTYLADVVAIMGNVNIVLGEIDR 408
>gi|284992922|ref|YP_003411476.1| NADH dehydrogenase I subunit D [Geodermatophilus obscurus DSM
43160]
gi|284066167|gb|ADB77105.1| NADH dehydrogenase I, D subunit [Geodermatophilus obscurus DSM
43160]
Length = 443
Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats.
Identities = 175/406 (43%), Positives = 241/406 (59%), Gaps = 20/406 (4%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GPQHP+ HGVLRL+L+L+GE V + IG LH G EK E + + Q +
Sbjct: 42 ERLVVNMGPQHPSTHGVLRLVLDLEGETVTKARVVIGYLHTGIEKNTEYRNWTQGTTFVT 101
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+DY++P+ E Y +AVEKLLG+E P R Q IRVL E+ RI SHL+ + T M++GAL
Sbjct: 102 RMDYLSPLYNEAGYCMAVEKLLGVEAPQRAQTIRVLVMELNRIASHLVALATFGMEMGAL 161
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
T GF ERE ++ E +G RM+ AY RPGG+ QD+PP VE I + P + D
Sbjct: 162 TGMTNGFRERELVLDLLEEITGLRMNHAYIRPGGLAQDLPPGAVEHIREFLQVMPDRVAD 221
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
LLTG I++ R + G + + G +G ++R +G WDLRK +PY Y DF+
Sbjct: 222 FHKLLTGQPIWQARLKDAGYLDVTGCVAMGVTGPVLRAAGLPWDLRKVEPYLGYETYDFE 281
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK------ 300
+P D + RYLVRM E+ ES+KII Q ++RL + GPV D KI P
Sbjct: 282 VPTADTCDAWGRYLVRMAEVNESLKIIEQALDRL----EPGPVMVEDKKIAWPAQLSLGP 337
Query: 301 ----------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGN 350
+ M +SME+LIHHFKL TEG+ VP G+VY +E+P+GE G +++SDGG
Sbjct: 338 DGMGNSLEHVKHIMGQSMEALIHHFKLVTEGFRVPAGQVYVPIESPRGELGYHVVSDGGT 397
Query: 351 KPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+P+R +R P + +LQA + +G +ADV A + SLD V G DR
Sbjct: 398 RPWRVHVRDPSFVNLQATAAMSEGGMIADVIAAIASLDPVMGGCDR 443
>gi|89280745|ref|YP_514643.1| NADH dehydrogenase subunit 7 [Oryza sativa Indica Group]
gi|114151580|ref|YP_740366.1| NADH dehydrogenase subunit 7 [Zea perennis]
gi|115278548|ref|YP_762338.1| NADH dehydrogenase subunit 7 [Sorghum bicolor]
gi|115278618|ref|YP_762499.1| NADH dehydrogenase subunit 7 [Tripsacum dactyloides]
gi|194033225|ref|YP_002000562.1| NADH dehydrogenase subunit 7 [Oryza sativa Japonica Group]
gi|23495385|dbj|BAC19866.1| NADH dehydrogenase subunit 7 [Oryza sativa Japonica Group]
gi|74100112|gb|AAZ99276.1| NADH dehydrogenase subunit 7 [Oryza sativa Indica Group]
gi|74100167|gb|AAZ99330.1| NADH dehydrogenase subunit 7 [Oryza sativa Japonica Group]
gi|74100221|gb|AAZ99383.1| NADH dehydrogenase subunit 7 [Oryza sativa Japonica Group]
gi|102567914|gb|ABF70831.1| NADH dehydrogenase subunit 7 [Zea perennis]
gi|114309669|gb|ABI60886.1| NADH dehydrogenase subunit 7 [Sorghum bicolor]
gi|114432109|gb|ABI74658.1| NADH dehydrogenase subunit 7 [Tripsacum dactyloides]
gi|164422244|gb|ABY55217.1| NADH dehydrogenase subunit 7 [Bambusa oldhamii]
Length = 394
Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats.
Identities = 232/392 (59%), Positives = 293/392 (74%), Gaps = 4/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ ++FT N GPQHPAAHGV R +LE++GE+VER +PHIG LHRGTEKLIE KT+LQA+PY
Sbjct: 7 QIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGSLHRGTEKLIEYKTYLQALPY 66
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
FDR DYV+ M QEHA++ AVE+LL E+P+R Q IRVL+ EI RI +H L TT AMDVG
Sbjct: 67 FDRSDYVSTMAQEHAHSSAVERLLNCEVPLRAQYIRVLFCEITRISNHSLASTTHAMDVG 126
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A TP LW FEEREKL+ FYER G+RMHA++ RPGGV QD+P L DI F S +
Sbjct: 127 ASTPFLWAFEEREKLLEFYERVPGARMHASFIRPGGVAQDLPLGLCRDIDSSTQQFASRI 186
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+++ ++ TGNRI+KQR V+IGTV + A WGFSGVM+RG G WD R++ PY+ + + D
Sbjct: 187 DELEEMSTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGPGVCWDSRRAAPYDVHDQSD 246
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
D+P+G GD YDRY +R+ EMR+SV+II QC N++ G + A D K+ PP R+ M
Sbjct: 247 LDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQCPNQM----PSGMIKADDRKLCPPSRSRM 302
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K SMES IHHF+LYTEG+ VP Y AVEAPKGEFGV+L+S+G N+PYRCKIRAPG+AH
Sbjct: 303 KLSMESSIHHFELYTEGFSVPAPSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAH 362
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Q ++ + K H ADV I+G+ DIVFGEVDR
Sbjct: 363 SQGLDSMSKHHMPADVVTIIGTQDIVFGEVDR 394
>gi|94502715|ref|YP_588347.1| NADH dehydrogenase subunit 7 [Zea mays subsp. mays]
gi|114151646|ref|YP_740386.1| NADH dehydrogenase subunit 7 [Zea mays subsp. parviglumis]
gi|40795154|gb|AAR91198.1| NADH dehydrogenase subunit 7 [Zea mays]
gi|93116053|gb|ABE98686.1| NADH dehydrogenase subunit 7 [Zea mays subsp. mays]
gi|93116097|gb|ABE98729.1| NADH dehydrogenase subunit 7 [Zea mays subsp. mays]
gi|102567979|gb|ABF70863.1| NADH dehydrogenase subunit 7 [Zea mays subsp. parviglumis]
gi|102579646|gb|ABF70926.1| NADH dehydrogenase subunit 7 [Zea mays subsp. mays]
Length = 394
Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats.
Identities = 233/392 (59%), Positives = 293/392 (74%), Gaps = 4/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ ++FT N GPQHPAAHGV R +LE++GE+VER +PHIG LHRGTEKLIE KT+LQA+PY
Sbjct: 7 QIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGSLHRGTEKLIEYKTYLQALPY 66
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
FDR DYV+ M QEHA++ AVE+LL E+P+R Q IRVL+ EI RI +H L TT AMDVG
Sbjct: 67 FDRSDYVSTMAQEHAHSSAVERLLNCEVPLRAQYIRVLFCEITRISNHSLASTTHAMDVG 126
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A TP LW FEEREKL+ FYER G+RMHA++ RPGGV QD+P L DI F S +
Sbjct: 127 ASTPFLWAFEEREKLLEFYERVPGARMHASFIRPGGVAQDLPLGLCRDIDSSTQQFASRI 186
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+++ ++ TGNRI+KQR V+IGTV + A WGFSGVM+RG G WD R++ PY+ + + D
Sbjct: 187 DELEEMSTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGPGVCWDSRRAAPYDVHDQSD 246
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
D+P+G GD YDRY +R+ EMR+SV+II QC NR+ G + A D K+ PP R+ M
Sbjct: 247 LDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQCPNRM----PSGMIKADDRKLCPPSRSRM 302
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K SMES IHHF+LYTEG+ VP Y AVEAPKGEFGV+L+S+G N+PYRCKIRAPG+AH
Sbjct: 303 KLSMESSIHHFELYTEGFSVPAPSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAH 362
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Q ++ + K H ADV I+G+ DIVFGEVDR
Sbjct: 363 SQGLDSMSKHHMPADVVTIIGTQDIVFGEVDR 394
>gi|226306211|ref|YP_002766171.1| NADH-quinone oxidoreductase chain D [Rhodococcus erythropolis PR4]
gi|226185328|dbj|BAH33432.1| NADH-quinone oxidoreductase chain D [Rhodococcus erythropolis PR4]
Length = 443
Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats.
Identities = 175/410 (42%), Positives = 246/410 (60%), Gaps = 22/410 (5%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGVLRLILE++GE V IG LH G EK +E + + Q V +
Sbjct: 38 EAERIVVNMGPQHPSTHGVLRLILEIEGETVVEARCGIGYLHTGIEKNLEFRNWTQGVTF 97
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
R+DY++P E AY L VEKLL I +IP R +IRV+ E+ RI SHL+ + T M+
Sbjct: 98 VTRMDYLSPFFNETAYCLGVEKLLDITDDIPERATVIRVMMMELNRISSHLVALATGGME 157
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA+T L+GF ERE ++ +E +G RM+ AY RPGG+ QD+P V + P
Sbjct: 158 LGAVTAMLFGFRERELILDVFETITGLRMNHAYIRPGGLAQDLPDGSVAKVRELLKVLPK 217
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L D+ +L+ N I+K R IG + L G +G ++R +G D R++QPY Y
Sbjct: 218 RLRDVELMLSDNSIWKARTQGIGYLDLTGCMALGVTGPVLRATGLPHDQRRAQPYCGYEN 277
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK-- 300
+FD+ DCY RY++R+ EM+ES+KI+ QC+++L + GPV D KI P
Sbjct: 278 YEFDVVTHDGSDCYGRYVIRVEEMKESLKIVEQCLDKL----QPGPVMVDDKKIAWPADL 333
Query: 301 --------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLIS 346
M+ SME LIHHFKL TEG VP G+VY AVE+P+GE GV+++S
Sbjct: 334 AVGPDGLGNSQKHIAKIMESSMEGLIHHFKLVTEGIRVPPGQVYVAVESPRGELGVHMVS 393
Query: 347 DGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
DGG +PYR R P + +LQA+ +C+G ++DV A + S+D V G VDR
Sbjct: 394 DGGTRPYRVHFRDPSFTNLQAVAAMCEGGMVSDVIASVASIDPVMGGVDR 443
>gi|114151612|ref|YP_740444.1| NADH dehydrogenase subunit 7 [Zea luxurians]
gi|110287608|gb|ABG65654.1| NADH dehydrogenase subunit 7 [Zea luxurians]
Length = 392
Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats.
Identities = 233/396 (58%), Positives = 294/396 (74%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + ++FT N GPQHPAAHGV R +LE++GE+VER +PHIG LHRGTEKLIE KT+LQ
Sbjct: 1 MRNGQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGSLHRGTEKLIEYKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDR DYV+ M QEHA++ AVE+LL E+P+R Q IRVL+ EI RI +H L TT A
Sbjct: 61 ALPYFDRSDYVSTMAQEHAHSSAVERLLNCEVPLRAQYIRVLFCEITRISNHSLASTTHA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGA TP LW FEEREKL+ FYER G+RMHA++ RPGGV QD+P L DI F
Sbjct: 121 MDVGASTPFLWAFEEREKLLEFYERVPGARMHASFIRPGGVAQDLPLGLCRDIDSSTQQF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
S ++++ ++ TGNRI+KQR V+IGTV + A WGFSGVM+RG G WD R++ PY+ +
Sbjct: 181 ASRIDELEEMSTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGPGVCWDSRRAAPYDVH 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+ D D+P+G GD YDRY +R+ EMR+SV+II QC N++ G + A D K+ PP
Sbjct: 241 DQSDLDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQCPNQM----PSGMIKADDRKLCPPS 296
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R+ MK SMES IHHF+LYTEG+ VP Y AVEAPKGEFGV+L+S+G N+PYRCKIRAP
Sbjct: 297 RSRMKLSMESSIHHFELYTEGFSVPAPSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAP 356
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AH Q ++ + K H ADV I+G+ DIVFGEVDR
Sbjct: 357 GFAHSQGLDSMSKHHMPADVVTIIGTQDIVFGEVDR 392
>gi|93116145|gb|ABE98776.1| NADH dehydrogenase subunit 7 [Zea mays subsp. mays]
Length = 394
Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats.
Identities = 232/392 (59%), Positives = 293/392 (74%), Gaps = 4/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ ++FT N GPQHPAAHGV R +LE++GE+VER +PHIG LHRGTEKLIE KT+LQA+PY
Sbjct: 7 QIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGSLHRGTEKLIEYKTYLQALPY 66
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
FDR DYV+ M QEHA++ AVE+L+ E+P+R Q IRVL+ EI RI +H L TT AMDVG
Sbjct: 67 FDRSDYVSTMAQEHAHSSAVERLVNCEVPLRAQYIRVLFCEITRISNHSLASTTHAMDVG 126
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A TP LW FEEREKL+ FYER G+RMHA++ RPGGV QD+P L DI F S +
Sbjct: 127 ASTPFLWAFEEREKLLEFYERVPGARMHASFIRPGGVAQDLPLGLCRDIDSSTQQFASRI 186
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+++ ++ TGNRI+KQR V+IGTV + A WGFSGVM+RG G WD R++ PY+ + + D
Sbjct: 187 DELEEMSTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGPGVCWDSRRAAPYDVHDQSD 246
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
D+P+G GD YDRY +R+ EMR+SV+II QC NR+ G + A D K+ PP R+ M
Sbjct: 247 LDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQCPNRM----PSGMIKADDRKLCPPSRSRM 302
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K SMES IHHF+LYTEG+ VP Y AVEAPKGEFGV+L+S+G N+PYRCKIRAPG+AH
Sbjct: 303 KLSMESSIHHFELYTEGFSVPAPSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAH 362
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Q ++ + K H ADV I+G+ DIVFGEVDR
Sbjct: 363 SQGLDSMSKHHMPADVVTIIGTQDIVFGEVDR 394
>gi|57168319|ref|ZP_00367453.1| NADH2 dehydrogenase (ubiquinone) I chain D Cj1576c [Campylobacter
coli RM2228]
gi|57020127|gb|EAL56801.1| NADH2 dehydrogenase (ubiquinone) I chain D Cj1576c [Campylobacter
coli RM2228]
Length = 408
Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats.
Identities = 174/394 (44%), Positives = 240/394 (60%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ IN GPQHP+AHG LRLILELDGE V + P IG +HRG EK+ E + + +
Sbjct: 17 EQEDSKMIINLGPQHPSAHGNLRLILELDGEQVVKARPAIGYMHRGMEKMAENMIYQEFI 76
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DR+DY+A +AY AVEKL G+EIP R +IR++ E+ RI SHLL + T A+D
Sbjct: 77 PTTDRMDYIAASANNYAYCAAVEKLCGLEIPRRAAVIRMILLELNRIASHLLWLATHALD 136
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA++ L+ F ERE ++ E+ G+R+ + R GGV D+P + ++ +CD FP
Sbjct: 137 IGAMSVFLYCFREREYVLDLIEKYCGARLTHSSMRIGGVMLDLPEGFLNELLAFCDKFPK 196
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ D LL NRI++ R N+G V E A WG +GVM+RGSG +D+RK +PY Y+E
Sbjct: 197 DIADYEALLDDNRIWRLRTENVGVVSKEQAMNWGCTGVMLRGSGVRYDIRKEEPYLLYNE 256
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+DF +P GD Y RY V M E RES+KI+RQC + A+ P+ V +
Sbjct: 257 IDFGVPYATQGDSYARYKVYMQEFRESLKILRQCAALYKDTPPE--ILANHPEYVSASKE 314
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ SL+ HF L T+G P GEVY E+PKGE G ++ SDG +PYR K R P Y
Sbjct: 315 QILTQNYSLMQHFVLITQGLKPPKGEVYVPTESPKGELGFFIHSDGTGRPYRLKARTPSY 374
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H E + G LADV AI+G+++IV GE+DR
Sbjct: 375 WHCAFFEEMLVGTYLADVVAIMGNVNIVLGEIDR 408
>gi|315638065|ref|ZP_07893250.1| NADH-quinone oxidoreductase subunit D [Campylobacter upsaliensis
JV21]
gi|315481913|gb|EFU72532.1| NADH-quinone oxidoreductase subunit D [Campylobacter upsaliensis
JV21]
Length = 408
Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats.
Identities = 173/394 (43%), Positives = 238/394 (60%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++ IN GPQHP+AHG LRLILELDGE V + P IG +HRG EK+ E + + +
Sbjct: 17 ERDDAKMIINLGPQHPSAHGNLRLILELDGEQVTKARPCIGYMHRGMEKMAENMIYQEFI 76
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DR+DY+A +A AVEKL G+EIP R +IR++ E+ RI SHLL + T A+D
Sbjct: 77 PTTDRMDYIAASANNYACCAAVEKLCGLEIPRRAAVIRMILLELNRIASHLLWLATHALD 136
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA++ L+ F ERE ++ ER G+R+ + R GGV D+P ++++ +C FP+
Sbjct: 137 IGAMSVFLYCFREREYVLDLIERYCGARLTHSSMRIGGVMLDLPDGFLDELLAFCAKFPN 196
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ D LL NRI++ R N+G V E A WG SGVM+RGSG +D+RK +PY Y E
Sbjct: 197 DVKDYEALLDDNRIWRLRTENVGLVTKEQAMNWGCSGVMLRGSGVCYDIRKEEPYLLYDE 256
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+DF +P GD Y RY V M E RES+KI+ QCV + A+ P+ V +
Sbjct: 257 VDFGVPYATQGDSYARYKVYMQEFRESLKILTQCVKLYKDTPPE--ILANHPEYVSASKE 314
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ SL+ HF L T+G P GEVY E+PKGE G ++ SDG +PYR K R P +
Sbjct: 315 QIMTQNYSLMQHFVLVTQGLKPPKGEVYVPTESPKGELGFFIHSDGTGRPYRLKARTPSF 374
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H E + G LADV AI+G+++IV GE+DR
Sbjct: 375 WHCAFFEEMLVGSYLADVVAIMGNVNIVLGEIDR 408
>gi|111022875|ref|YP_705847.1| NADH dehydrogenase subunit D [Rhodococcus jostii RHA1]
gi|123045607|sp|Q0S447|NUOD_RHOSR RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|110822405|gb|ABG97689.1| probable NADH dehydrogenase subunit D [Rhodococcus jostii RHA1]
Length = 438
Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats.
Identities = 184/407 (45%), Positives = 248/407 (60%), Gaps = 22/407 (5%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
+N GPQHP+ HGVLRLILE++GE V IG LH G EK +E +T+ Q V + R
Sbjct: 36 RIVVNMGPQHPSTHGVLRLILEIEGETVTEARCGIGYLHTGIEKNLEYRTWTQGVTFVTR 95
Query: 68 LDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
+DY++P E AY L VEKLL I E+P R +IRV+ E+ RI SHL+ + T M++GA
Sbjct: 96 MDYLSPFFNETAYCLGVEKLLDITDEVPERASVIRVMLMELNRISSHLVALATGGMELGA 155
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+T L+GF ERE ++ +E +G RM+ AY RPGG+ QD+P VE + P L
Sbjct: 156 VTAMLFGFRERELVLDVFEMITGLRMNHAYIRPGGLSQDLPEGAVEKVRELLALMPERLR 215
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
D+ +LL NRI+K R IG + L G +G M+R +G DLRKSQPY Y +F
Sbjct: 216 DMENLLNDNRIWKGRTQGIGYLDLTGCMALGITGPMLRATGLPHDLRKSQPYCGYENYEF 275
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK----- 300
D+ D Y RYL+R+ EM+ES+KI+ QC+++L GP+ A D KI P
Sbjct: 276 DVSTDTGCDAYGRYLIRVDEMKESLKIVEQCLDKLR----PGPIMAEDKKIAWPADLTLG 331
Query: 301 -----------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGG 349
R M SMESLIHHFKL TEG+ VP G+VY AVE+P+GE GV+++SDGG
Sbjct: 332 PDGLGNSPGHVREIMDSSMESLIHHFKLVTEGFRVPPGQVYVAVESPRGELGVHMVSDGG 391
Query: 350 NKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+P+R R P + +LQ++ C+G +ADV A + S+D V G VDR
Sbjct: 392 TRPFRVHFRDPSFTNLQSVAATCEGGMVADVIAAVASIDPVMGGVDR 438
>gi|158317833|ref|YP_001510341.1| NADH dehydrogenase subunit D [Frankia sp. EAN1pec]
gi|218534406|sp|A8LC98|NUOD_FRASN RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|158113238|gb|ABW15435.1| NADH dehydrogenase I, D subunit [Frankia sp. EAN1pec]
Length = 457
Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats.
Identities = 185/412 (44%), Positives = 253/412 (61%), Gaps = 22/412 (5%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ T+N GPQHP+ HGVLRL+LE++GE V IG LH G EK E +T+ QAV
Sbjct: 50 EDDGERITVNMGPQHPSTHGVLRLVLEIEGETVTETRLVIGYLHTGIEKSCEYRTWTQAV 109
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R DY++P+ E AY L+VEKLLGI E+P R +IRVL E+ RI SHL+ + T
Sbjct: 110 TFLTRADYLSPLYNEAAYCLSVEKLLGITGEVPERATVIRVLVMELQRIASHLVWLATGG 169
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
M++GA T ++GF EREK++ E +G RM+ AY RPGG+ QDIP E++ +I + D
Sbjct: 170 MELGATTGMIFGFREREKILDLLETITGLRMNHAYIRPGGLAQDIPDEVIPEIRAFLDYM 229
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P + + LLTG I+K R V++ + G +G ++R +G WDLRK+ PY Y
Sbjct: 230 PKRIREYHALLTGQPIWKARMVDVNFLDAAACLALGTTGPVLRAAGLPWDLRKTMPYCGY 289
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+FD+P GD Y RYLVR+ EM ES+KII QC++RL GPV +D KI P
Sbjct: 290 ETYEFDVPTALEGDSYARYLVRIEEMGESLKIIEQCLDRLR----PGPVMVADKKIAWPS 345
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
R M SME+LIHHFKL TEG+ VP G+VY +E+P+GE G ++
Sbjct: 346 QLAIGSDGMGNSLEYIRKIMGTSMEALIHHFKLVTEGFRVPAGQVYTQIESPRGELGYHV 405
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +P+R +R P + +LQA+ L +G Q+ADV + S+D V G VDR
Sbjct: 406 VSDGGTRPFRVHVRDPSFVNLQAVPALTEGGQVADVIVGVASVDPVLGGVDR 457
>gi|54024633|ref|YP_118875.1| NADH dehydrogenase subunit D [Nocardia farcinica IFM 10152]
gi|81680060|sp|Q5YWD0|NUOD_NOCFA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|54016141|dbj|BAD57511.1| putative NADH dehydrogenase I chain D [Nocardia farcinica IFM
10152]
Length = 453
Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats.
Identities = 188/411 (45%), Positives = 251/411 (61%), Gaps = 22/411 (5%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLILE++GE V IG LH G EK +E +T++Q V
Sbjct: 47 AREERIVVNMGPQHPSTHGVLRLILEIEGETVVEARCGIGYLHTGIEKNLEYRTWMQGVT 106
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+ R+DY++P E AY L VE+LLGI IP R ++RVL E+ RI SHL+ + T M
Sbjct: 107 FVTRMDYLSPFYNETAYCLGVERLLGITEQIPERASIVRVLLMELNRISSHLVCLATGGM 166
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
++GALTP L+GF ERE ++ +E +G RM+ AY RPGG+ QD+P + V + D P
Sbjct: 167 ELGALTPMLFGFRERELILDVFETITGLRMNHAYIRPGGLAQDLPDDGVAKVRELLDLMP 226
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
L D+ LLT N IFK R +IG + L G +G ++R +G DLRKSQPY Y
Sbjct: 227 KRLRDMEHLLTQNPIFKARTQDIGYLDLTGCMALGITGPVLRSAGLPHDLRKSQPYCGYE 286
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+FD+P DCY RYL+R+ EM+ES+KI+ QC++RL GPV D K+ P
Sbjct: 287 TYEFDVPTTTGCDCYGRYLIRVEEMKESLKIVEQCLDRLR----PGPVMIEDKKLAWPAD 342
Query: 302 A----------------DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLI 345
M SME LIHHFKL TEG VP G+VY AVE+P+GE GV+++
Sbjct: 343 LKLGADGLGNSPAHIGRIMGSSMEGLIHHFKLVTEGIRVPAGQVYVAVESPRGELGVHMV 402
Query: 346 SDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
SDGG +PYR R P + +LQA+ +C+G +ADV A + S+D V G VDR
Sbjct: 403 SDGGTRPYRVHYRDPSFTNLQAVAAMCEGGMVADVIAAVASIDPVMGGVDR 453
>gi|283953811|ref|ZP_06371342.1| NADH dehydrogenase I chain D [Campylobacter jejuni subsp. jejuni
414]
gi|283794852|gb|EFC33590.1| NADH dehydrogenase I chain D [Campylobacter jejuni subsp. jejuni
414]
Length = 408
Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats.
Identities = 176/394 (44%), Positives = 244/394 (61%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++++ IN GPQHP+AHG LRL+LELDGE V + P IG +HRG EK+ E + + +
Sbjct: 17 EQENSKMIINLGPQHPSAHGNLRLVLELDGEQVVKARPCIGYMHRGMEKMAENMIYQEFI 76
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DR+DY+A +AY AVEKL G+EIP R +IR++ E+ RI SHLL + T A+D
Sbjct: 77 PTTDRMDYIAASANNYAYCAAVEKLCGLEIPRRAAVIRMILLELNRIASHLLWLATHALD 136
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA++ L+ F ERE ++ E+ G+R+ + R GGV D+P +E++ +CD FP+
Sbjct: 137 IGAMSVFLYCFREREYVLDLIEKYCGARLTHSSMRIGGVMLDLPENYLEEMLAFCDKFPN 196
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L D DLL NRI++ R NIG V E A WG +GVM+RGSG +D+RK +PY Y+E
Sbjct: 197 DLKDYEDLLDDNRIWRLRTENIGVVTKEQALNWGCTGVMLRGSGVKYDIRKEEPYLLYNE 256
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++F +P GD Y RY V M E RES+KI+RQC + A+ P+ V +
Sbjct: 257 VEFGVPYATQGDSYARYKVYMQEFRESLKILRQCAALYKDTPPE--ILATHPEYVSASKE 314
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ SL+ HF L T+G P GEVY E+PKGE G ++ SDG +PYR K R P Y
Sbjct: 315 QILTQNYSLMQHFVLITQGLKPPKGEVYVPTESPKGELGFFIHSDGTGRPYRLKARTPSY 374
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H E + G LADV AI+G+++IV GE+DR
Sbjct: 375 WHCAFFEEMLVGTYLADVVAIMGNVNIVLGEIDR 408
>gi|111220502|ref|YP_711296.1| NADH dehydrogenase subunit D [Frankia alni ACN14a]
gi|122954588|sp|Q0RRW5|NUOD_FRAAA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|111148034|emb|CAJ59700.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
(NDH-1, chain D) [Frankia alni ACN14a]
Length = 470
Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats.
Identities = 179/412 (43%), Positives = 248/412 (60%), Gaps = 22/412 (5%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++ + +N GPQHP+ HGVLRL+LE+DGE V IG LH G EK E +T+ QAV
Sbjct: 63 EQDAERIVVNMGPQHPSTHGVLRLVLEIDGETVTETRLVIGYLHTGIEKSCEYRTWTQAV 122
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R DY++P+ E AY L+VEKLLGI +IP R +IRVL E+ RI SHL+ + T
Sbjct: 123 TFLTRADYLSPLYNEAAYCLSVEKLLGITDDIPERATVIRVLVMELQRIASHLVWLATGG 182
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
M++GA T ++GF EREK++ E +G RM+ A+ RPGG+ QD+P I +
Sbjct: 183 MELGATTAMIFGFREREKVLDLLELITGLRMNHAFIRPGGLAQDLPDGTERAIREFLADM 242
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P + + LLTG I+K R V++ + G +G ++R +G WDLRK+ PY Y
Sbjct: 243 PKRIREYHRLLTGQPIWKARMVDVNVLDAAGCIALGVTGPVLRAAGLPWDLRKTMPYCGY 302
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+FD+P D + RYLVR+ EM ES+KII QC++RL GPV +D KI P
Sbjct: 303 ETYEFDVPTALEADSFARYLVRLEEMGESLKIIEQCLDRLR----PGPVMVADKKIAWPA 358
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
R M SME+LIHHFKL TEG+ VP G+VY +E+P+GE G ++
Sbjct: 359 QLSIGADGMGNSLAHIRNIMGTSMEALIHHFKLVTEGFRVPPGQVYTQIESPRGELGYHV 418
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +P+R +R P + +LQA+ L +G Q+ADV + S+D V G VDR
Sbjct: 419 VSDGGTRPFRVHVRDPSFVNLQAVPALTEGGQVADVIVGVASVDPVLGGVDR 470
>gi|299756722|ref|XP_001829546.2| NADH-ubiquinone oxidoreductase [Coprinopsis cinerea okayama7#130]
gi|298411803|gb|EAU92506.2| NADH-ubiquinone oxidoreductase [Coprinopsis cinerea okayama7#130]
Length = 441
Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats.
Identities = 232/371 (62%), Positives = 286/371 (77%), Gaps = 4/371 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K R FT+NFGPQHPAAHGVLR+ILEL+GE + R DPHIGLLHRGTEKLIE K + QA+
Sbjct: 67 DSKMRHFTVNFGPQHPAAHGVLRMILELNGEEILRADPHIGLLHRGTEKLIEYKNYTQAL 126
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E +Y+LAVEKLL +++P R Q IR L+ EI RIL+HL+ V T MD
Sbjct: 127 PYFDRLDYVSMMTNELSYSLAVEKLLNVQVPERAQWIRTLFGEITRILNHLMAVLTHVMD 186
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VG LTP LWGFEEREKLM FYER SG+R+HAAY RPGGV D+P L+EDI W F S
Sbjct: 187 VGGLTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVAFDLPHGLLEDIFKWATQFGS 246
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+++I +++TGNRI+K+R + IG V + A + FSGVM+RGSG WD+RK PY+ Y+E
Sbjct: 247 RIDEIEEVVTGNRIWKERTIGIGVVTAQQALDYSFSGVMLRGSGVPWDIRKVAPYDKYAE 306
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++FDIP+GK+GDCYDRYL R+ EMRES++II QC+N++ G V D K+ PP RA
Sbjct: 307 VEFDIPVGKNGDCYDRYLCRVQEMRESLRIISQCLNKM----PTGVVKVDDHKLTPPPRA 362
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
MK SMESLIHHFKL++EGY VP GE Y A+EAPKGE GVYL+SDG N+PYRC IRAPG+
Sbjct: 363 MMKESMESLIHHFKLFSEGYSVPPGETYTAIEAPKGEMGVYLVSDGTNRPYRCSIRAPGF 422
Query: 363 AHLQAMEFLCK 373
AHL +F+ +
Sbjct: 423 AHLAGSDFMMR 433
>gi|170588619|ref|XP_001899071.1| Probable NADH-ubiquinone oxidoreductase 49 kDa subunit,
mitochondrialprecursor [Brugia malayi]
gi|158593284|gb|EDP31879.1| Probable NADH-ubiquinone oxidoreductase 49 kDa subunit,
mitochondrialprecursor , putative [Brugia malayi]
Length = 478
Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats.
Identities = 216/394 (54%), Positives = 286/394 (72%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+K + +NFGPQHPAAHGVLRLILELD E+V + PHIGLLHR TEKLIE KT+ QA+
Sbjct: 89 EKPLHYYLLNFGPQHPAAHGVLRLILELDNEMVMKAVPHIGLLHRATEKLIEYKTYTQAL 148
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDY+ + E +ALAVEKLLGIEIP R + IR L++E+ R+ +H ++ T A+D
Sbjct: 149 PYFDRLDYITMLTNEQGFALAVEKLLGIEIPPRAKWIRTLFAELNRLANHAFSIVTHALD 208
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA+TP W FEEREKL F ER SG+RMH Y RPGGV D+P L++DI W FP
Sbjct: 209 IGAMTPLFWMFEEREKLFEFNERVSGARMHVNYIRPGGVAWDLPLGLLDDIYDWTIQFPQ 268
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++ + D+LT NR+++ R +IG + DA GFSGVM+R SG +D+RK+QPYE Y +
Sbjct: 269 RIDAMEDMLTENRLWQSRTRDIGLISATDAQSLGFSGVMLRASGVKYDVRKAQPYEVYDQ 328
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++FD+P+G GDCYDRYL R+ EMR+S++I+ C+N++ G + D K+VPPKR
Sbjct: 329 IEFDVPVGTRGDCYDRYLCRLEEMRQSLRIVLDCLNKM----PPGEIKVDDHKVVPPKRE 384
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SMESLIHHFK ++EGY VP G Y +EAP GE+G Y+++DG +KPYRC IR PG+
Sbjct: 385 EMKNSMESLIHHFKFFSEGYQVPPGSCYVPIEAPNGEYGTYVVADGTSKPYRCFIRGPGF 444
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL + L ++DV A++G++DIVFGEVDR
Sbjct: 445 AHLAGLHDLTHMSLISDVVAVIGTMDIVFGEVDR 478
>gi|302521197|ref|ZP_07273539.1| NADH dehydrogenase (quinone), D subunit [Streptomyces sp. SPB78]
gi|302430092|gb|EFL01908.1| NADH dehydrogenase (quinone), D subunit [Streptomyces sp. SPB78]
Length = 442
Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats.
Identities = 180/412 (43%), Positives = 245/412 (59%), Gaps = 21/412 (5%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K +N GPQHP+ HGVLRLILE+DGE V IG LH G EK +E +T+ Q
Sbjct: 34 KADDERIIVNMGPQHPSTHGVLRLILEIDGETVTEARCGIGYLHTGIEKNLEFRTWTQGT 93
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R+DY+ P E AY L VE+LLGIE +P R ++RVL E+ RI SHL+ + T
Sbjct: 94 TFVTRMDYLTPFFNETAYCLGVERLLGIEDDVPDRANIVRVLLMELNRISSHLVAIATGG 153
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
M++G+ T ++GF +RE + +E +G RM+ A+ RPGG+ QD+PP ++ + + +
Sbjct: 154 MELGSTTIMIYGFRDRELCLDLFELFTGLRMNHAFVRPGGLAQDLPPGSLDALAEFVKTM 213
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L + L TGN IF+ R ++G + L G +G ++R +G DLRK+QPY Y
Sbjct: 214 RHNLTEYDKLATGNPIFRARMKDVGHLDLTGCMALGATGPILRSAGLPHDLRKAQPYCGY 273
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
DFDIP D Y R+L+RM EMRES++II QC RL GPV +D KI P
Sbjct: 274 ETYDFDIPTDDGCDSYGRFLIRMAEMRESLRIIEQCAERLRE---PGPVMVADKKIAWPA 330
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
R M SME+LIHHFKL TEG+ VP G+ YAAVE+ KGE G ++
Sbjct: 331 QLAQGPDGIGNSLDHIREIMGTSMEALIHHFKLVTEGFRVPPGQAYAAVESAKGELGAHV 390
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +P+R R P + +LQAM +C+G Q+ADV + S+D V G VDR
Sbjct: 391 VSDGGTRPFRVHFRDPSFTNLQAMAAMCEGGQVADVIVAVASIDPVMGGVDR 442
>gi|318057840|ref|ZP_07976563.1| NADH dehydrogenase subunit D [Streptomyces sp. SA3_actG]
gi|318078938|ref|ZP_07986270.1| NADH dehydrogenase subunit D [Streptomyces sp. SA3_actF]
Length = 442
Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats.
Identities = 180/412 (43%), Positives = 246/412 (59%), Gaps = 21/412 (5%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K +N GPQHP+ HGVLRLILE+DGE V IG LH G EK +E +T+ Q
Sbjct: 34 KADDERIIVNMGPQHPSTHGVLRLILEIDGETVTEARCGIGYLHTGIEKNLEFRTWTQGT 93
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R+DY+ P+ E AY L VE+LLGIE +P R ++RVL E+ RI SHL+ + T
Sbjct: 94 TFVTRMDYLTPLFNETAYCLGVERLLGIEDDVPDRANIVRVLLMELNRISSHLVAIATGG 153
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
M++G+ T ++GF +RE + +E +G RM+ A+ RPGG+ QD+PP ++ + + +
Sbjct: 154 MELGSTTIMIYGFRDRELCLDLFELFTGLRMNHAFVRPGGLAQDLPPGSLDALAEFVKTM 213
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L + L TGN IF+ R ++G + L G +G ++R +G DLRK+QPY Y
Sbjct: 214 RHNLTEYDKLATGNPIFRARMKDVGHLDLTGCMALGATGPILRSAGLPHDLRKAQPYCGY 273
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
DFDIP D Y R+L+RM EMRES++II QC RL GPV +D KI P
Sbjct: 274 ETYDFDIPTDDGCDSYGRFLIRMAEMRESLRIIEQCAERLRE---PGPVMVADKKIAWPA 330
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
R M SME+LIHHFKL TEG+ VP G+ YAAVE+ KGE G ++
Sbjct: 331 QLAQGPDGIGNSLDHIREIMGTSMEALIHHFKLVTEGFRVPPGQAYAAVESAKGELGAHV 390
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +P+R R P + +LQAM +C+G Q+ADV + S+D V G VDR
Sbjct: 391 VSDGGTRPFRVHFRDPSFTNLQAMAAMCEGGQVADVIVAVASIDPVMGGVDR 442
>gi|86739254|ref|YP_479654.1| NADH dehydrogenase subunit D [Frankia sp. CcI3]
gi|123751500|sp|Q2JFL7|NUOD_FRASC RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|86566116|gb|ABD09925.1| NADH dehydrogenase subunit D [Frankia sp. CcI3]
Length = 482
Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats.
Identities = 175/412 (42%), Positives = 249/412 (60%), Gaps = 22/412 (5%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++++ +N GPQHP+ HGVLRL+LE++GE V IG LH G EK E +T+ QAV
Sbjct: 75 EEENERIVVNMGPQHPSTHGVLRLVLEIEGETVTETRLVIGYLHTGIEKSCEYRTWTQAV 134
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R DY++P+ E AY L+VE+LLGI +P R +IRV+ E+ RI SHL+ + T
Sbjct: 135 TFLTRADYLSPLFNEAAYCLSVERLLGITEQVPERATVIRVMVMELQRIASHLVWLATGG 194
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
M++GA T ++GF EREK++ E +G RM+ AY RPGG+ QD+P I +
Sbjct: 195 MELGATTAMIFGFREREKVLDLLELITGLRMNHAYIRPGGLAQDLPDGAERAIRAFLADM 254
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P + + LLTG ++K R V++ + G +G ++R +G WDLRK+ PY Y
Sbjct: 255 PKRIREYHALLTGQPVWKARMVDVNVLDAAGCIALGTTGPVLRAAGLPWDLRKTMPYCGY 314
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+FD+P GD + RYLVR+ EM ES+KI+ QC++RL GPV +D KI P
Sbjct: 315 ETYEFDVPTALEGDSFARYLVRLEEMGESLKIVDQCLDRLR----PGPVMVADKKIAWPS 370
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
R M SME+LIHHFKL TEG+ VP G+VY +E+P+GE G ++
Sbjct: 371 QLSVGSDGTGNSLAYIRKIMGTSMEALIHHFKLVTEGFRVPAGQVYTQIESPRGELGYHV 430
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +P+R +R P + +LQA+ L +G Q+ADV + S+D V G VDR
Sbjct: 431 VSDGGTRPFRVHVRDPSFVNLQAVPALTEGGQVADVIVGVASVDPVLGGVDR 482
>gi|312200064|ref|YP_004020125.1| NADH dehydrogenase I, D subunit [Frankia sp. EuI1c]
gi|311231400|gb|ADP84255.1| NADH dehydrogenase I, D subunit [Frankia sp. EuI1c]
Length = 447
Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats.
Identities = 175/412 (42%), Positives = 249/412 (60%), Gaps = 19/412 (4%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++ + + +N GPQHP+ HGVLRL+L+++GE V + IG LH G EK E +T+ QAV
Sbjct: 37 EEAAETIVVNMGPQHPSTHGVLRLVLDIEGETVRQTRLVIGYLHTGIEKSCEYRTWTQAV 96
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R DY++P+ E AY L+VEKLLGI +P R +IRVL E+ RI SHL+ + T
Sbjct: 97 TFLTRADYLSPLFTETAYCLSVEKLLGITDQVPERATVIRVLVMELQRISSHLVGLATSG 156
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
M++GA T + GF EREK++ E +G RM+ AY RPGG+ QD+P + I +
Sbjct: 157 MELGATTAMIVGFREREKILDLLEMITGLRMNHAYVRPGGLAQDLPDGAEKAIRVFLKDM 216
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P + + LLTG I++ R +++ + G +G ++R +G WDLRK+ PY Y
Sbjct: 217 PGRIKEYHRLLTGQPIWRNRMIDVNYLDASACLALGVTGPLLRAAGLPWDLRKTMPYCGY 276
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+FD+P D + RYLVR+ EM ES+KII QC+++L GPV +D KI P
Sbjct: 277 ENYEFDVPTATEADSFARYLVRLEEMTESLKIIEQCLDKLSKLGP-GPVMVADKKIAWPA 335
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
R M SME+LIHHFKL TEG+ VP G+VY A+E P+GE GV++
Sbjct: 336 QLSIGSDGMGNSLDHIRKIMGTSMEALIHHFKLVTEGFRVPPGQVYTAIEGPRGELGVHV 395
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +PYR +R P + +LQA+ + +G Q+ DV + S+D V G VDR
Sbjct: 396 VSDGGTRPYRVHVRDPSFVNLQAVPAMTEGGQVGDVIVAVASVDPVLGGVDR 447
>gi|11134048|sp|Q36450|NDUS2_NICSY RecName: Full=NADH-ubiquinone oxidoreductase 49 kDa subunit;
AltName: Full=NADH dehydrogenase subunit 7
gi|805002|emb|CAA60392.1| NADH:ubiquinone oxydoreductase subunit 7 [Nicotiana sylvestris]
Length = 394
Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats.
Identities = 233/393 (59%), Positives = 297/393 (75%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
++ ++FT NFGPQHPAAHGV R +LE++GE+VER +PHIGLL RGTEKLIE KT+LQA+P
Sbjct: 6 RQIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQRGTEKLIEYKTYLQALP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR +YV+ M QEHA++ AVE+LL E+P+R Q IRVL+ EI RI +H L +TT AMDV
Sbjct: 66 YSDRSEYVSMMAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRISNHSLALTTHAMDV 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP LW FEEREKL+ FYER SG+RMHA++ RPGGV QD+P L DI + F S
Sbjct: 126 GASTPFLWAFEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCIDIDSFTQQFASR 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
++++ ++ TGNRI+KQR V+IGTV + A WGFSGVM+RGSG WDLRK+ PY+ + +L
Sbjct: 186 IDELEEMSTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGSGVCWDLRKAAPYDVHDQL 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D DIP+G GD YDRY +R+ EMR+SV+II QC+N++ G + A D K+ PP R+
Sbjct: 246 DPDIPVGTRGDRYDRYCIRIEEMRQSVRIIVQCLNQM----PSGMIKADDRKLCPPSRSR 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK SMES IHHF+ YTEG+ VP Y AVEAPKGEFGV+L+S+G N+PYR KIRAP +A
Sbjct: 302 MKLSMESSIHHFEPYTEGFSVPAPSTYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPCFA 361
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H Q ++ + K H ADV I+G+ DIV GEVDR
Sbjct: 362 HSQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 394
>gi|294056098|ref|YP_003549756.1| NADH dehydrogenase I, D subunit [Coraliomargarita akajimensis DSM
45221]
gi|293615431|gb|ADE55586.1| NADH dehydrogenase I, D subunit [Coraliomargarita akajimensis DSM
45221]
Length = 409
Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats.
Identities = 175/396 (44%), Positives = 244/396 (61%), Gaps = 5/396 (1%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
++ K + +IN GP HP HGVLRL++ELDG+ + + +P IG LHRG+EK+ E TF Q
Sbjct: 18 EELKGDTMSINVGPSHPTTHGVLRLLMELDGDTITKCEPVIGYLHRGSEKIAENMTFNQF 77
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
VPY DRLDY+AP+ AYA+ +EK+ + +P R Q IR+L E+ RI SHLL + M
Sbjct: 78 VPYTDRLDYLAPLANNVAYAMTIEKIANLTVPERCQAIRMLCCELARISSHLLGIGVYGM 137
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D GA T ++ F EREKL +E +G+R +Y R GG+ +DIP + + +C+
Sbjct: 138 DAGAWTVFMYTFTEREKLYTLFEELTGARFTTSYTRIGGMARDIPDGWLGRVSDFCNGVL 197
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
L+ + LLT NRIF R V IG + E A +G +G +R G +D+RK +PY Y
Sbjct: 198 PVLDQVDKLLTRNRIFMDRTVGIGAITKEQALSYGLTGPNLRACGVDFDIRKDKPYLGYE 257
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPK-IVPPK 300
DFD+PIG GDCYDRYL+R E+R+SV+I+RQ + + GP A + K IV P+
Sbjct: 258 NYDFDVPIGTTGDCYDRYLMRAEEVRQSVRIVRQVIEKFPD----GPYQADEAKQIVAPQ 313
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
++ + SME LI +F + TEG +P GE Y E PKG G + +S GG PYR KIR P
Sbjct: 314 KSKVLTSMEELIQNFMITTEGPQIPAGEAYFEAENPKGALGFFAVSKGGGVPYRLKIRGP 373
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ L + + GH + D++ +LGSLD V GE DR
Sbjct: 374 SFSSLCVLPEIAPGHHMTDITVLLGSLDFVMGECDR 409
>gi|15130888|emb|CAC48237.1| NADH dehydrogenase subunit 7 [Ulota crispa]
Length = 364
Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats.
Identities = 236/368 (64%), Positives = 293/368 (79%), Gaps = 4/368 (1%)
Query: 21 HGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAY 80
HGVLRL+LE++GE+VER +PHIGLLHRGTEKLIE KT+LQA+PYFDRLDYV+ M QEHAY
Sbjct: 1 HGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMAQEHAY 60
Query: 81 ALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLM 140
+LA EKL E+P+R Q IRVL+ EI RIL+HLL +TT AMDVGALTP LW FEEREKL+
Sbjct: 61 SLAAEKLCNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMDVGALTPFLWAFEEREKLL 120
Query: 141 VFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQR 200
FYER SG+RMHA+Y RPGGV QD+P L EDI + F S +++I ++LT NRI+KQR
Sbjct: 121 EFYERVSGARMHASYIRPGGVAQDMPLGLSEDIFLFTQQFASRIDEIEEMLTNNRIWKQR 180
Query: 201 NVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYL 260
V+IGTV + A WGFSGVM+RGSG WDLRKS PY+ Y++L FD+P+G GDCYDRY
Sbjct: 181 LVDIGTVTAQQALDWGFSGVMLRGSGVCWDLRKSAPYDVYNQLIFDVPVGTRGDCYDRYC 240
Query: 261 VRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTE 320
+R+ EMR+S++II QC+N++ G + A D K+ PP R+ MK+SMESLIHHFKLYTE
Sbjct: 241 IRIEEMRQSIRIIMQCLNQM----PSGMIKADDRKLCPPSRSQMKQSMESLIHHFKLYTE 296
Query: 321 GYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADV 380
G+ VP Y AVEAPKGEFGV+L+S+G N+PYRCKIRAPG+AHLQ ++F+ K H L+DV
Sbjct: 297 GFSVPASSTYTAVEAPKGEFGVFLVSNGTNRPYRCKIRAPGFAHLQGLDFMSKHHMLSDV 356
Query: 381 SAILGSLD 388
I+G+ D
Sbjct: 357 VTIIGTQD 364
>gi|313679588|ref|YP_004057327.1| NADH dehydrogenase subunit d [Oceanithermus profundus DSM 14977]
gi|313152303|gb|ADR36154.1| NADH dehydrogenase subunit D [Oceanithermus profundus DSM 14977]
Length = 404
Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats.
Identities = 172/394 (43%), Positives = 249/394 (63%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +S +N GPQHP+ HGVLR+++ L GE + + PHIG LH G EK +E +T+ Q
Sbjct: 15 ELRSELMVLNVGPQHPSTHGVLRVVVTLAGEEIVDLVPHIGYLHSGFEKTMEHRTYTQNF 74
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
Y R+DYV + AYAL VEKL+G ++P R + IR++ +E+ RI SHL+ V T +D
Sbjct: 75 TYTPRMDYVHSFAHDLAYALTVEKLVGAQVPERAETIRIILNELSRIASHLIFVATGLLD 134
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA+TP + F ERE ++ +E +G R H Y R GG+ +D+P E V ++ + F +
Sbjct: 135 LGAMTPFFYAFREREAILDLFEWVTGQRFHHNYLRVGGLKEDVPEEFVPELKKFLSGFLA 194
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++D + G+ IF R +IG + E A G +G +R SG +D+RK+ PY Y +
Sbjct: 195 KVDDYQGMFDGSPIFASRARDIGVIPPEVAINLGLTGGSLRASGVNYDVRKAHPYGGYDK 254
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DFD+P+G GD YDR +VR+ EMR+S +II Q V RL + GP+ +P + P R
Sbjct: 255 YDFDVPLGTRGDVYDRMIVRLEEMRQSHRIIEQAVERL----EPGPIRDPNPHLSLPPRE 310
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ RSME+LI HFKL TEG+H P+GEVY E+ +GE Y++SDGG+ PYR KIR P +
Sbjct: 311 MLGRSMEALIFHFKLVTEGFHPPLGEVYVPTESARGELAYYIVSDGGSMPYRVKIRTPEF 370
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++Q++ + KGHQ AD AIL +LD V G +DR
Sbjct: 371 VNIQSLAYASKGHQFADFIAILATLDPVLGGIDR 404
>gi|283956948|ref|ZP_06374420.1| NADH dehydrogenase I chain D [Campylobacter jejuni subsp. jejuni
1336]
gi|283791449|gb|EFC30246.1| NADH dehydrogenase I chain D [Campylobacter jejuni subsp. jejuni
1336]
Length = 408
Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats.
Identities = 176/394 (44%), Positives = 243/394 (61%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ IN GPQHP+AHG LRLILELDGE V + P IG +HRG EK+ E + + +
Sbjct: 17 EQEDSKMIINLGPQHPSAHGNLRLILELDGEQVVKARPCIGYMHRGMEKMAENMIYQEFI 76
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DR+DY+A +AY AVEKL G+EIP R +IR++ E+ RI SHLL + T A+D
Sbjct: 77 PTTDRMDYIAASANNYAYCAAVEKLCGLEIPRRAAVIRMILLELNRIASHLLWLATHALD 136
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA++ L+ F ERE ++ E+ G+R+ + R GGV D+P +E++ +CD FP+
Sbjct: 137 IGAMSVFLYCFREREYVLDLIEKYCGARLTHSSMRIGGVMLDLPENYLEEMLAFCDKFPN 196
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L D DLL NRI++ R N+G V E A WG +GVM+RGSG +D+RK +PY Y+E
Sbjct: 197 DLKDYEDLLDDNRIWRLRTENVGVVTKEQALNWGCTGVMLRGSGIKYDIRKEEPYLLYNE 256
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++F +P GD Y RY V M E RES+KI+RQC + A+ P+ V +
Sbjct: 257 VEFGVPYATQGDSYARYKVYMQEFRESLKILRQCATLYKDTPPE--ILATHPEYVSASKE 314
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ SL+ HF L T+G P GEVY E+PKGE G ++ SDG +PYR K R P Y
Sbjct: 315 QILTQNYSLMQHFVLITQGLKPPKGEVYVPTESPKGELGFFIHSDGTGRPYRLKARTPSY 374
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H E + G LADV AI+G+++IV GE+DR
Sbjct: 375 WHCAFFEEMLVGTYLADVVAIMGNVNIVLGEIDR 408
>gi|82658724|gb|ABB88531.1| menaquinone oxidoreductase [Streptomyces sp. Eco86]
Length = 445
Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats.
Identities = 174/412 (42%), Positives = 245/412 (59%), Gaps = 22/412 (5%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GPQHP+ HGVLRLILE+DGE V IG LH G EK E +T+ Q
Sbjct: 38 RANDERIVVNMGPQHPSTHGVLRLILEIDGETVTEARCGIGYLHTGIEKQTEYRTWTQGT 97
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
R+DY+ E AY LAVEKLLGIE +P R ++RVL E+ RI SHL+ + T
Sbjct: 98 TLVTRMDYLTSFFNETAYCLAVEKLLGIEDQVPDRATVVRVLLMELNRISSHLVAIATGG 157
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
M++GA T ++GF +RE ++ YE +G RM+ A+ RPGG+ QD+P V+ + +
Sbjct: 158 MELGASTVMIYGFRDRELILDAYELITGLRMNHAFIRPGGLAQDLPAGAVDQLRELVGTL 217
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L + L +GN +FK R ++ + L G +G ++R +G DLRK+QPY Y
Sbjct: 218 RKNLPEYDKLASGNPVFKARMQDVAHLDLTGCMALGVTGPILRSTGLPHDLRKAQPYCGY 277
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
DFD+P D Y R+L+R+ EMR+S++I+ QC++RL + GPV +D KI P
Sbjct: 278 ETYDFDVPTTDTCDAYGRFLIRLEEMRQSLRIVDQCLDRL----EPGPVMVADKKIAWPA 333
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
+ M SMESLIHHFKL TEG+ VP G++Y +VE+PKGE G ++
Sbjct: 334 QLALGPDGLGNSPDHIKQIMGTSMESLIHHFKLVTEGFRVPPGQIYVSVESPKGELGAHV 393
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +P+R R P + +LQAM + +G Q+ADV ++ S+D V G VDR
Sbjct: 394 VSDGGTRPFRVHFRDPSFTNLQAMAAMAEGGQVADVIVVIASIDPVLGGVDR 445
>gi|57238589|ref|YP_179720.1| NADH dehydrogenase subunit D [Campylobacter jejuni RM1221]
gi|218563165|ref|YP_002344945.1| NADH dehydrogenase subunit D [Campylobacter jejuni subsp. jejuni
NCTC 11168]
gi|11134112|sp|Q9PM99|NUOD_CAMJE RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|81557395|sp|Q5HSL5|NUOD_CAMJR RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|57167393|gb|AAW36172.1| NADH-quinone oxidoreductase, D subunit [Campylobacter jejuni
RM1221]
gi|112360872|emb|CAL35673.1| NADH dehydrogenase I chain D [Campylobacter jejuni subsp. jejuni
NCTC 11168]
gi|315059026|gb|ADT73355.1| NADH-ubiquinone oxidoreductase chain D [Campylobacter jejuni subsp.
jejuni S3]
gi|315927678|gb|EFV07009.1| NADH dehydrogenase, D subunit [Campylobacter jejuni subsp. jejuni
DFVF1099]
Length = 408
Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats.
Identities = 178/394 (45%), Positives = 247/394 (62%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ IN GPQHP+AHG LRLILELDGE V + P IG +HRG EK+ E + + +
Sbjct: 17 EQEDSKMIINLGPQHPSAHGNLRLILELDGEQVVKARPCIGYMHRGMEKMAENMIYQEFI 76
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DR+DY+A +AY AVEKL G+EIP R +IR++ E+ RI SHLL + T A+D
Sbjct: 77 PTTDRMDYIAASANNYAYCAAVEKLCGLEIPRRAAVIRMILLELNRITSHLLWLATHALD 136
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA++ L+ F ERE ++ E+ G+R+ + R GGV D+P +E++ +CD FP+
Sbjct: 137 IGAMSVFLYCFREREYVLDLIEKYCGARLTHSSMRIGGVMLDLPENYLEEMLAFCDKFPN 196
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L D DLL NRI++ R N+G V E A WG +GVM+RGSG +D+RK +PY Y+E
Sbjct: 197 DLKDYEDLLDDNRIWRLRTENVGVVTKEQALNWGCTGVMLRGSGIKYDIRKEEPYLLYNE 256
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++F +P GD Y RY V M E RES+KI+RQC +L K+ + A+ P+ V +
Sbjct: 257 VEFGVPYATQGDSYARYKVYMQEFRESLKILRQCA--MLYKDTSPEILATHPEYVSASKE 314
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ SL+ HF L T+G P GEVY E+PKGE G ++ SDG +PYR K R P Y
Sbjct: 315 QILTQNYSLMQHFVLITQGLKPPKGEVYVPTESPKGELGFFIHSDGTGRPYRLKARTPSY 374
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H E + G LADV AI+G+++IV GE+DR
Sbjct: 375 WHCAFFEEMLVGTYLADVVAIMGNVNIVLGEIDR 408
>gi|157415792|ref|YP_001483048.1| NADH dehydrogenase subunit D [Campylobacter jejuni subsp. jejuni
81116]
gi|229891285|sp|A8FNN4|NUOD_CAMJ8 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|157386756|gb|ABV53071.1| NADH dehydrogenase I chain D [Campylobacter jejuni subsp. jejuni
81116]
gi|307748431|gb|ADN91701.1| NADH-quinone oxidoreductase subunit D [Campylobacter jejuni subsp.
jejuni M1]
gi|315931256|gb|EFV10226.1| NADH dehydrogenase (quinone) [Campylobacter jejuni subsp. jejuni
327]
Length = 408
Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats.
Identities = 176/394 (44%), Positives = 243/394 (61%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ IN GPQHP+AHG LRLILELDGE V + P IG +HRG EK+ E + + +
Sbjct: 17 EQEDSKMIINLGPQHPSAHGNLRLILELDGEQVVKARPCIGYMHRGMEKMAENMIYQEFI 76
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DR+DY+A +AY AVEKL G+EIP R +IR++ E+ RI SHLL + T A+D
Sbjct: 77 PTTDRMDYIAASANNYAYCAAVEKLCGLEIPRRAAVIRMILLELNRIASHLLWLATHALD 136
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA++ L+ F ERE ++ E+ G+R+ + R GGV D+P +E++ +CD FP+
Sbjct: 137 IGAMSVFLYCFREREYVLDLIEKYCGARLTHSSMRIGGVMLDLPENYLEEMLVFCDKFPN 196
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L D DLL NRI++ R N+G V E A WG +GVM+RGSG +D+RK +PY Y+E
Sbjct: 197 DLKDYEDLLDDNRIWRLRTENVGVVTKEQALNWGCTGVMLRGSGIKYDIRKEEPYLLYNE 256
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++F +P GD Y RY V M E RES+KI+RQC + A+ P+ V +
Sbjct: 257 VEFGVPYATQGDSYARYKVYMQEFRESLKILRQCATLYKDTPPE--ILATHPEYVSASKE 314
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ SL+ HF L T+G P GEVY E+PKGE G ++ SDG +PYR K R P Y
Sbjct: 315 QILTQNYSLMQHFVLITQGLKPPKGEVYVPTESPKGELGFFIHSDGTGRPYRLKARTPSY 374
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H E + G LADV AI+G+++IV GE+DR
Sbjct: 375 WHCAFFEEMLVGTYLADVVAIMGNVNIVLGEIDR 408
>gi|86152217|ref|ZP_01070428.1| NADH-quinone oxidoreductase, D subunit [Campylobacter jejuni subsp.
jejuni 260.94]
gi|86152433|ref|ZP_01070638.1| NADH dehydrogenase I, D subunit [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|315124986|ref|YP_004066990.1| NADH-quinone oxidoreductase, D subunit [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
gi|85840706|gb|EAQ57957.1| NADH-quinone oxidoreductase, D subunit [Campylobacter jejuni subsp.
jejuni 260.94]
gi|85843318|gb|EAQ60528.1| NADH dehydrogenase I, D subunit [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|315018708|gb|ADT66801.1| NADH-quinone oxidoreductase, D subunit [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
gi|315929521|gb|EFV08714.1| NADH-quinone dehydrogenase, D subunit [Campylobacter jejuni subsp.
jejuni 305]
Length = 408
Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats.
Identities = 176/394 (44%), Positives = 243/394 (61%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ IN GPQHP+AHG LRLILELDGE V + P IG +HRG EK+ E + + +
Sbjct: 17 EQEDSKMIINLGPQHPSAHGNLRLILELDGEQVVKARPCIGYMHRGMEKMAENMIYQEFI 76
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DR+DY+A +AY AVEKL G+EIP R +IR++ E+ RI SHLL + T A+D
Sbjct: 77 PTTDRMDYIAASANNYAYCAAVEKLCGLEIPRRAAVIRMILLELNRITSHLLWLATHALD 136
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA++ L+ F ERE ++ E+ G+R+ + R GGV D+P +E++ +CD FP+
Sbjct: 137 IGAMSVFLYCFREREYVLDLIEKYCGARLTHSSMRIGGVMLDLPENYLEEMLAFCDKFPN 196
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L D DLL NRI++ R N+G V E A WG +GVM+RGSG +D+RK +PY Y+E
Sbjct: 197 DLKDYEDLLDDNRIWRLRTENVGVVTKEQALNWGCTGVMLRGSGIKYDIRKEEPYLLYNE 256
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++F +P GD Y RY V M E RES+KI+RQC + A+ P+ V +
Sbjct: 257 VEFGVPYATQGDSYARYKVYMQEFRESLKILRQCATLYKDTPPE--ILATHPEYVSASKE 314
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ SL+ HF L T+G P GEVY E+PKGE G ++ SDG +PYR K R P Y
Sbjct: 315 QILTQNYSLMQHFVLITQGLKPPKGEVYVPTESPKGELGFFIHSDGTGRPYRLKARTPSY 374
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H E + G LADV AI+G+++IV GE+DR
Sbjct: 375 WHCAFFEEMLVGTYLADVVAIMGNVNIVLGEIDR 408
>gi|72163091|ref|YP_290748.1| NADH dehydrogenase subunit D [Thermobifida fusca YX]
gi|123628756|sp|Q47LE7|NUOD_THEFY RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|71916823|gb|AAZ56725.1| NADH dehydrogenase I, D subunit [Thermobifida fusca YX]
Length = 434
Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats.
Identities = 181/415 (43%), Positives = 244/415 (58%), Gaps = 24/415 (5%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ ++ IN GPQHP+ HGVLRLIL LDGE V IG LH G EK +E +T+ Q
Sbjct: 24 QRSQTDRLVINMGPQHPSTHGVLRLILTLDGETVTEARVGIGYLHTGIEKNMEYRTWTQG 83
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ R+DY+ P+ E AY LAVEKLLGI +P R +IRV+ E+ RI SH + + T
Sbjct: 84 TTFVTRMDYLTPLFNETAYCLAVEKLLGITDQVPERANVIRVMMMELNRISSHFVAMATF 143
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
M++GA T GF ERE ++ +E +G RM+ AY RPGGV QD+PP V +
Sbjct: 144 GMELGATTVMTNGFREREMVLDIFEMVTGLRMNHAYIRPGGVAQDLPPGTVGKVRELLTE 203
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
P L D+ LL N I+ R ++ + + G +G ++R +G WDLRK++PY
Sbjct: 204 MPKRLKDMRKLLDANPIYLARTRDVAYLDVTGCLALGVTGPILRAAGLPWDLRKAKPYCG 263
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y +FDIP+ D Y RY VRM E+ +S+KII QC+++L K GPV DPKI P
Sbjct: 264 YENYEFDIPVSDGADVYARYRVRMAEIEQSLKIIEQCLDKL----KPGPVMIEDPKIGWP 319
Query: 300 KRADM------------------KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFG 341
+ + SME+LIHHFKL TEG+ VP G+ YAAVE+PKGE G
Sbjct: 320 AQLALGPDGMGNAPSHIAHIMGKGGSMEALIHHFKLVTEGFRVPPGQAYAAVESPKGELG 379
Query: 342 VYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +SDGG +PYR R P + +LQA+ +C+G +ADV A + S+D V G VDR
Sbjct: 380 CFAVSDGGPRPYRVHFRDPSFTNLQAVAAMCEGGTVADVIAAVASIDPVMGGVDR 434
>gi|15130886|emb|CAC48191.1| NADH dehydrogenase subunit 7 [Leucobryum glaucum]
Length = 364
Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats.
Identities = 235/368 (63%), Positives = 293/368 (79%), Gaps = 4/368 (1%)
Query: 21 HGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAY 80
HGV RL+LE++GE+VER +PHIGLLHRGTEKLIE KT+LQA+PYFDRLDYV+ M QEHAY
Sbjct: 1 HGVSRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMAQEHAY 60
Query: 81 ALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLM 140
+LAVEKL E+P+R Q IRVL+ EI RIL+HLL +TT AMDVGALTP LW FEEREKL+
Sbjct: 61 SLAVEKLCNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMDVGALTPFLWAFEEREKLL 120
Query: 141 VFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQR 200
FYER SG+RMHA+Y RPGGV QD+P L EDI + F S +++I ++LT NRI+KQR
Sbjct: 121 EFYERVSGARMHASYIRPGGVAQDMPLGLSEDIFLFTQQFASRIDEIEEMLTNNRIWKQR 180
Query: 201 NVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYL 260
V+IGTV + A WGFSGVM+RGSG WDLRKS PY+ Y++L FD+P+G GDCYDRY
Sbjct: 181 LVDIGTVTAQQALDWGFSGVMLRGSGVCWDLRKSAPYDVYNQLIFDVPVGTRGDCYDRYC 240
Query: 261 VRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTE 320
+R+ EMR+S++II QC+N++ G + A + K+ PP R+ MK+SMESLIHHFKLYTE
Sbjct: 241 IRIEEMRQSIRIIMQCLNQM----PSGMIKADNRKLCPPSRSQMKQSMESLIHHFKLYTE 296
Query: 321 GYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADV 380
G+ VP Y AVEAPKGEFGV+L+S+G N+PYRCKIRAPG+AHLQ ++F+ K H L+DV
Sbjct: 297 GFSVPASSTYTAVEAPKGEFGVFLVSNGTNRPYRCKIRAPGFAHLQGLDFMSKHHMLSDV 356
Query: 381 SAILGSLD 388
I+G+ D
Sbjct: 357 VTIIGTQD 364
>gi|148925722|ref|ZP_01809410.1| NADH dehydrogenase I chain D [Campylobacter jejuni subsp. jejuni
CG8486]
gi|205355591|ref|ZP_03222361.1| NADH dehydrogenase I chain D [Campylobacter jejuni subsp. jejuni
CG8421]
gi|145845732|gb|EDK22823.1| NADH dehydrogenase I chain D [Campylobacter jejuni subsp. jejuni
CG8486]
gi|205346368|gb|EDZ33001.1| NADH dehydrogenase I chain D [Campylobacter jejuni subsp. jejuni
CG8421]
Length = 408
Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats.
Identities = 178/394 (45%), Positives = 247/394 (62%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ IN GPQHP+AHG LRLILELDGE V + P IG +HRG EK+ E + + +
Sbjct: 17 EQEDSKMIINLGPQHPSAHGNLRLILELDGEQVVKARPCIGYMHRGMEKMAENMIYQEFI 76
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DR+DY+A +AY AVEKL G+EIP R +IR++ E+ RI SHLL + T A+D
Sbjct: 77 PTTDRMDYIAASANNYAYCAAVEKLCGLEIPRRAAVIRMILLELNRITSHLLWLATHALD 136
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA++ L+ F ERE ++ E+ G+R+ + R GGV D+P +E++ +CD FP+
Sbjct: 137 IGAMSVFLYCFREREYVLDLIEKYCGARLTHSSMRIGGVMLDLPENYLEEMLAFCDKFPN 196
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L D DLL NRI++ R N+G V E A WG +GVM+RGSG +D+RK +PY Y+E
Sbjct: 197 DLKDYEDLLDDNRIWRLRTENVGVVTKEQALNWGCTGVMLRGSGIKYDIRKEEPYLLYNE 256
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++F +P GD Y RY V M E RES+KI+RQC +L K+ + A+ P+ V +
Sbjct: 257 VEFGVPYATQGDSYARYKVYMQEFRESLKILRQCA--MLYKDTPPEILATHPEYVSASKE 314
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ SL+ HF L T+G P GEVY E+PKGE G ++ SDG +PYR K R P Y
Sbjct: 315 QILTQNYSLMQHFVLITQGLKPPKGEVYVPTESPKGELGFFIHSDGTGRPYRLKARTPSY 374
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H E + G LADV AI+G+++IV GE+DR
Sbjct: 375 WHCAFFEEMLVGTYLADVVAIMGNVNIVLGEIDR 408
>gi|15130884|emb|CAC48167.1| NADH dehydrogenase subunit 7 [Dichodontium pellucidum]
Length = 364
Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats.
Identities = 237/368 (64%), Positives = 295/368 (80%), Gaps = 4/368 (1%)
Query: 21 HGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAY 80
HGVLRL+LE++GE+VER +PHIGLLHRGTEKLIE KT+LQA+PYFDRLDYV+ M QEHAY
Sbjct: 1 HGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMAQEHAY 60
Query: 81 ALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLM 140
+LAVEKL E+P+R Q IRVL+ EI RIL+HLL +TT AMDVGALTP LW FEEREKL+
Sbjct: 61 SLAVEKLCNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMDVGALTPFLWAFEEREKLL 120
Query: 141 VFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQR 200
FYER SG+RMHA+Y RPGGV QD+P L EDI + F S +++I ++LT NRI+KQR
Sbjct: 121 EFYERVSGARMHASYIRPGGVAQDMPLGLSEDIFLFTQQFASRIDEIEEMLTNNRIWKQR 180
Query: 201 NVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYL 260
V+IGTV + A WGFSGVM+RGSG WDLRKS PY+ Y++L FD+P+G GDCYDRY
Sbjct: 181 LVDIGTVTAQQALDWGFSGVMLRGSGVCWDLRKSAPYDVYNQLIFDVPVGIRGDCYDRYC 240
Query: 261 VRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTE 320
+R+ EMR+S++II QC+N++ G + A D K+ PP R+ MK+SMESLIHHFKLYTE
Sbjct: 241 IRIEEMRQSIRIIMQCLNQM----PSGMIKADDRKLCPPSRSQMKQSMESLIHHFKLYTE 296
Query: 321 GYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADV 380
G++VP Y AVEAPKGEFGV+L+S+G N+PYRCKIRAPG+AHLQ ++F+ K H L+DV
Sbjct: 297 GFYVPASSTYTAVEAPKGEFGVFLVSNGTNRPYRCKIRAPGFAHLQGLDFMSKHHMLSDV 356
Query: 381 SAILGSLD 388
I+G+ D
Sbjct: 357 VTIIGTQD 364
>gi|83815676|ref|YP_444541.1| NADH dehydrogenase I, D subunit [Salinibacter ruber DSM 13855]
gi|294506287|ref|YP_003570345.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Salinibacter ruber M8]
gi|123529614|sp|Q2S5J0|NUOD_SALRD RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|83757070|gb|ABC45183.1| NADH dehydrogenase I, D subunit [Salinibacter ruber DSM 13855]
gi|294342615|emb|CBH23393.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Salinibacter ruber M8]
Length = 451
Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats.
Identities = 169/390 (43%), Positives = 241/390 (61%), Gaps = 5/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GPQHPA HGVLR ++++DGE +E+ IG LHRG EKL E KT+ + +PY D
Sbjct: 65 NEMILNIGPQHPATHGVLRCVVKMDGETIEKSVLDIGYLHRGIEKLAEHKTYQEFMPYTD 124
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+DY++P + A+ LAVEKL IE+P R Q IR++ SE+ RI SH L + MD GA+
Sbjct: 125 RMDYLSPYSNNVAWCLAVEKLADIEVPERAQWIRMIMSELARISSHCLWLGVGMMDAGAV 184
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
+ +W F+ERE++ + +G+R ++ R GGV D P +E I + D+FP +
Sbjct: 185 SGFVWTFQEREEIYSIMDEVAGARFTVSHSRIGGVANDFSPRAIEMIRDFVDTFPDRIAG 244
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
LL NRI+ +RN +G V E+A G +G +RGSG +D+R+ +PY Y E+DF
Sbjct: 245 WEGLLNKNRIWVERNKGVGRVTKEEALELGLTGPNLRGSGVPYDVRRFEPYLKYDEVDFT 304
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
IP+ + GDC RY +R+ EM++SV+II QC++R+ GP+ + D K P + ++
Sbjct: 305 IPVREEGDCLARYFLRLDEMKQSVRIIEQCLDRMTE----GPIRSDDAKEAYPSKEEVYY 360
Query: 307 SMESLIHHFKLYTEGYHVPVGEV-YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
SME +IH F G P G Y A+E PKGE G YL SDG +P+R +I AP + +L
Sbjct: 361 SMEGMIHDFMYTDVGTVPPKGAHSYHAIEGPKGELGFYLTSDGTGRPWRVRINAPSFTNL 420
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
QAME + +G +AD I+GSLD V GE D
Sbjct: 421 QAMEHMLEGEMVADTVVIIGSLDPVMGEAD 450
>gi|88596198|ref|ZP_01099435.1| NADH-quinone oxidoreductase, D subunit [Campylobacter jejuni subsp.
jejuni 84-25]
gi|88191039|gb|EAQ95011.1| NADH-quinone oxidoreductase, D subunit [Campylobacter jejuni subsp.
jejuni 84-25]
Length = 408
Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats.
Identities = 177/394 (44%), Positives = 246/394 (62%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ IN GPQHP+AHG LRLILELDGE V + P IG +HRG EK+ E + + +
Sbjct: 17 EQEDSKMIINLGPQHPSAHGNLRLILELDGEQVVKARPCIGYMHRGMEKMAENMIYQEFI 76
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DR+DY+A +AY AVEKL G+EIP R +IR++ E+ RI SHLL + T A+D
Sbjct: 77 PTTDRMDYIAASANNYAYCAAVEKLCGLEIPRRAAVIRMILLELNRITSHLLWLATHALD 136
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA++ L+ F ERE ++ E+ G+R+ + R GGV D+P +E++ +CD F +
Sbjct: 137 IGAMSVFLYCFREREYVLDLIEKYCGARLTHSSMRIGGVMLDLPENYLEEMLAFCDKFLN 196
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L D DLL NRI++ R N+G V E A WG +GVM+RGSG +D+RK +PY Y+E
Sbjct: 197 DLKDYEDLLDDNRIWRLRTENVGVVTKEQALNWGCTGVMLRGSGIKYDIRKEEPYLLYNE 256
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++F +P GD Y RY V M E RES+KI+RQC +L K+ + A+ P+ V +
Sbjct: 257 VEFGVPYATQGDSYARYKVYMQEFRESLKILRQCA--MLYKDTSPEILATHPEYVSASKE 314
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ SL+ HF L T+G P GEVY E+PKGE G ++ SDG +PYR K R P Y
Sbjct: 315 QILTQNYSLMQHFVLITQGLKPPKGEVYVPTESPKGELGFFIHSDGTGRPYRLKARTPSY 374
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H E + G LADV AI+G+++IV GE+DR
Sbjct: 375 WHCAFFEEMLVGTYLADVVAIMGNVNIVLGEIDR 408
>gi|153952543|ref|YP_001398858.1| NADH dehydrogenase subunit D [Campylobacter jejuni subsp. doylei
269.97]
gi|229891286|sp|A7H5S8|NUOD_CAMJD RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|152939989|gb|ABS44730.1| NADH-quinone oxidoreductase, D subunit [Campylobacter jejuni subsp.
doylei 269.97]
Length = 408
Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats.
Identities = 176/394 (44%), Positives = 243/394 (61%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ IN GPQHP+AHG LRLILELDGE V + P IG +HRG EK+ E + + +
Sbjct: 17 EQEDSKMIINLGPQHPSAHGNLRLILELDGEQVVKARPCIGYMHRGMEKMAENMIYQEFI 76
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DR+DY+A +AY AVEKL G+EIP R +IR++ E+ RI SHLL + T A+D
Sbjct: 77 PTTDRMDYIAASANNYAYCAAVEKLCGLEIPRRAAVIRMILLELNRITSHLLWLATHALD 136
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA++ L+ F ERE ++ E+ G+R+ + R GGV D+P +E++ +CD FP+
Sbjct: 137 IGAMSVFLYCFREREYVLDLIEKYCGARLTHSSMRIGGVMLDLPENYLEEMLVFCDKFPN 196
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L D DLL NRI++ R N+G V E A WG +GVM+RGSG +D+RK +PY Y+E
Sbjct: 197 DLKDYEDLLDDNRIWRLRTENVGVVTKEQALNWGCTGVMLRGSGIKYDIRKEEPYLLYNE 256
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++F +P GD Y RY V M E RES+KI+RQC + A+ P+ V +
Sbjct: 257 VEFGVPYATQGDSYARYKVYMQEFRESLKILRQCATLYKDTPPE--ILATHPEYVSASKE 314
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ SL+ HF L T+G P GEVY E+PKGE G ++ SDG +PYR K R P Y
Sbjct: 315 QILTQNYSLMQHFVLITQGLKPPKGEVYVPTESPKGELGFFIHSDGTGRPYRLKARTPSY 374
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H E + G LADV AI+G+++IV GE+DR
Sbjct: 375 WHCAFFEEMLVGTYLADVVAIMGNVNIVLGEIDR 408
>gi|226355362|ref|YP_002785102.1| NADH dehydrogenase (quinone) subunit D [Deinococcus deserti VCD115]
gi|226317352|gb|ACO45348.1| putative NADH dehydrogenase (quinone), subunit D (NADH-quinone
oxidoreductase, subunit D) [Deinococcus deserti VCD115]
Length = 412
Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats.
Identities = 169/392 (43%), Positives = 245/392 (62%), Gaps = 4/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ ++N GPQHP+ HGVLRL++++DGE V +V PH+G LH G EK E +T+ Q V Y
Sbjct: 25 HTEVMSLNVGPQHPSTHGVLRLVVDMDGEYVRKVVPHMGYLHTGFEKTFEHRTYQQGVTY 84
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
R DY+ E AY L+VEKL+ ++P R +IRV+ E+GRI SHL+ V T +D+G
Sbjct: 85 APRTDYLHCFGHELAYVLSVEKLMQAQVPDRASMIRVILHELGRIHSHLVFVGTGLLDLG 144
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
ALTP + F E+E + +E A+G RM+ +FR GG+ +D+P + + + D +
Sbjct: 145 ALTPFFYAFREKESCVDLFEEATGYRMNQGFFRVGGLSRDVPEDWPGHVAQFLDQMERGV 204
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
++ ++L N IF R +G + + A G +G +R SG D+RK+ PY Y D
Sbjct: 205 DEYTNLFANNPIFLDRARGVGVIPTDVALDLGLTGPNLRASGVPLDVRKAHPYCGYEAYD 264
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F++ GD R+ +R++E ES+KIIRQ + RL K G + + KI P R ++
Sbjct: 265 FNVISSTDGDSLARFTMRLLEFSESIKIIRQALARL----KPGLIKDPNRKISLPPRHEL 320
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
+ SME++IHHFKL TEG+H P GEVY VE +GE G Y++SDGG+ PYR KIRAP + +
Sbjct: 321 ETSMEAVIHHFKLVTEGFHPPTGEVYVPVEGARGEVGYYIVSDGGSVPYRVKIRAPSFVN 380
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
LQA+E+ C G Q AD+ IL ++D V G+VDR
Sbjct: 381 LQALEYACVGAQFADLITILATIDPVLGDVDR 412
>gi|269836328|ref|YP_003318556.1| NADH dehydrogenase I, D subunit [Sphaerobacter thermophilus DSM
20745]
gi|269785591|gb|ACZ37734.1| NADH dehydrogenase I, D subunit [Sphaerobacter thermophilus DSM
20745]
Length = 410
Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats.
Identities = 169/390 (43%), Positives = 242/390 (62%), Gaps = 3/390 (0%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
R +N GPQHP+ HGVLR+ L L+GE + DP IG LHRG EK+ E+K + Q P+ D
Sbjct: 24 REMVLNMGPQHPSTHGVLRVRLTLEGETITACDPVIGYLHRGVEKIGESKRYAQFTPWTD 83
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R DYVA + Y LAVEKLLGIE P R Q R++ E+ RI SHL+ + T A+D+GAL
Sbjct: 84 RTDYVAAPSNNLGYVLAVEKLLGIEAPERAQYWRMIMGELARIASHLVWLGTHALDIGAL 143
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
+ L+ F ERE ++ +E+ G+R+ GG + IP L E I + FP +
Sbjct: 144 SMSLYCFRERELILDIFEKFCGARLTTNMMEIGGFSRPIPAGLPEMIRDFLKVFPQRQRE 203
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
DLL+ N I+ R +G ++ + A +G +G +RGSG +D+RK+QPY Y +DF+
Sbjct: 204 YEDLLSANPIWLARTRGVGVIEPDVAINYGLTGACLRGSGVNYDVRKAQPYLLYDRIDFE 263
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+P+G GD YDRYLVRM EMR+S+KII QC++++ GP+ ++ V P +
Sbjct: 264 VPLGTQGDVYDRYLVRMEEMRQSLKIIEQCLDQVPTD---GPLKLAESNYVIPPHETVLT 320
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+ E + HF +G+ P GEVY ++E KGE G Y++SDG PYR +IR P + +LQ
Sbjct: 321 TAEDMQRHFIWVIKGFSPPKGEVYMSIEHSKGELGYYIVSDGSPVPYRLRIRTPDFVNLQ 380
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ +L +G LADV A++G++DIV G VDR
Sbjct: 381 SLPYLAEGAMLADVVALIGTIDIVLGSVDR 410
>gi|284034166|ref|YP_003384097.1| NADH dehydrogenase I subunit D [Kribbella flavida DSM 17836]
gi|283813459|gb|ADB35298.1| NADH dehydrogenase I, D subunit [Kribbella flavida DSM 17836]
Length = 445
Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats.
Identities = 184/414 (44%), Positives = 247/414 (59%), Gaps = 19/414 (4%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ ++ +N GPQHP+ HGVLRLILE++GE V IG LH G EK +E +++ Q
Sbjct: 33 LGEEPEERIVVNMGPQHPSTHGVLRLILEIEGETVTEARCGIGYLHTGIEKNMEFRSWTQ 92
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTT 118
V + R+DY++P E AY LAVE+LLGIE IP + ++RVL E+ RI SHL+ + T
Sbjct: 93 GVTFCTRMDYLSPFYNEAAYCLAVERLLGIEDQIPEKANVMRVLLMELNRISSHLVCIAT 152
Query: 119 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
M++GALT GF ERE + +E +G RM+ A+ RPGGV QD+PP ++ I +
Sbjct: 153 GGMEIGALTVMTIGFREREMTLDLFELITGLRMNHAFIRPGGVAQDLPPGALDKIRDYIT 212
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
L + ++L N IFK R ++G + L G SG +R +G DLRK+QPY
Sbjct: 213 WMNKHLPEYAELCNANPIFKSRLQDVGYLDLTGCMALGISGPPLRATGYGLDLRKTQPYC 272
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
Y DFD+P D Y R+ VR+ EM ES+KI+ QC +RL + PV +D KI
Sbjct: 273 GYETYDFDVPTWDTADSYGRFRVRLQEMHESLKIVEQCADRLARMDGE-PVMVADKKIGW 331
Query: 299 PK----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGV 342
P + M SME+LIHHFKL TEG+ VP G+ Y AVE+P+GE G
Sbjct: 332 PSQLAVGNDGMGNSLDHIKHIMGESMEALIHHFKLVTEGFRVPAGQAYVAVESPRGELGC 391
Query: 343 YLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L+SDGG KPYR R P +A+LQAM LC+G Q+ADV + SLD V G VDR
Sbjct: 392 HLVSDGGTKPYRAHFRDPSFANLQAMPILCEGAQVADVIVAVASLDPVMGGVDR 445
>gi|124112064|ref|YP_001019161.1| 49 kDa subunit of NADH-plastoquinone oxidoreductase [Chlorokybus
atmophyticus]
gi|218527833|sp|Q19V59|NDHH_CHLAT RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|124012180|gb|ABD62196.2| 49 kDa subunit of NADH-plastoquinone oxidoreductase [Chlorokybus
atmophyticus]
Length = 393
Score = 405 bits (1040), Expect = e-111, Method: Composition-based stats.
Identities = 175/396 (44%), Positives = 232/396 (58%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + K+ I+ GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 MLETKTDPMVISMGPHHPSMHGVLRLIVTLDGENVIDCEPVLGYLHRGMEKIAENRTIVQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E A E+L IE+P R IRV+ E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEAITVNAPERLANIEVPKRASYIRVIMLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE + +E A+G RM YFR GGV D+P V+ +CD F
Sbjct: 123 ADIGAQTPFFYIFREREMIYDLFEAATGMRMMHNYFRIGGVAADLPYGWVDKCLDFCDYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+++ L+T N IF +R +IG + EDA WG SG M+R SG WDLRK YECY
Sbjct: 183 LPKVDEYERLITNNPIFLKRVKDIGKISKEDAINWGLSGPMLRASGVKWDLRKVDNYECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
ELD+ I GDC RY VR+ EMRES+KII+Q + + G GP + + +
Sbjct: 243 DELDWSIQWQSDGDCLARYQVRIGEMRESIKIIQQALKAIPG----GPYENLEARRLSKG 298
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R + E K + + +P E Y VEAPKGE GV+LI D P+R KIRAP
Sbjct: 299 RKSEWNNFE-YQFIGKKPSPTFKMPKQEHYVRVEAPKGELGVFLIGDDNVFPWRWKIRAP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ ++Q + L +G +LAD+ ILGS+DI+ GEVDR
Sbjct: 358 GFINVQILPQLVQGMKLADIMTILGSIDIIMGEVDR 393
>gi|284926771|gb|ADC29123.1| NADH dehydrogenase I chain D [Campylobacter jejuni subsp. jejuni
IA3902]
Length = 408
Score = 405 bits (1040), Expect = e-111, Method: Composition-based stats.
Identities = 175/394 (44%), Positives = 242/394 (61%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ IN GPQHP+AHG LRLILELDGE V + P IG +HRG EK+ E + + +
Sbjct: 17 EQEDSKMIINLGPQHPSAHGNLRLILELDGEQVVKARPCIGYMHRGMEKMAENMIYQEFI 76
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DR+DY+A +AY AVEKL G+EIP R +IR++ E+ RI SHLL + T A+D
Sbjct: 77 PTTDRMDYIAASANNYAYCAAVEKLCGLEIPRRAAVIRMILLELNRITSHLLWLATHALD 136
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA++ L+ F ERE ++ E+ G+R+ + R GGV D+P +E++ +CD F +
Sbjct: 137 IGAMSVFLYCFREREYVLDLIEKYCGARLTHSSMRIGGVMLDLPENYLEEMLAFCDKFLN 196
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L D DLL NRI++ R N+G V E A WG +GVM+RGSG +D+RK +PY Y+E
Sbjct: 197 DLKDYEDLLDDNRIWRLRTENVGVVTKEQALNWGCTGVMLRGSGIKYDIRKEEPYLLYNE 256
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++F +P GD Y RY V M E RES+KI+RQC + A+ P+ V +
Sbjct: 257 VEFGVPYATQGDSYARYKVYMQEFRESLKILRQCATLYKDTPPE--ILATHPEYVSASKE 314
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ SL+ HF L T+G P GEVY E+PKGE G ++ SDG +PYR K R P Y
Sbjct: 315 QILTQNYSLMQHFVLITQGLKPPKGEVYVPTESPKGELGFFIYSDGTGRPYRLKARTPSY 374
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H E + G LADV AI+G+++IV GE+DR
Sbjct: 375 WHCAFFEEMLVGTYLADVVAIMGNVNIVLGEIDR 408
>gi|323149047|ref|YP_004222829.1| NADH dehydrogenase subunit 7 [Vigna radiata]
gi|308206753|gb|ADO19890.1| NADH dehydrogenase subunit 7 [Vigna radiata]
Length = 394
Score = 405 bits (1040), Expect = e-111, Method: Composition-based stats.
Identities = 232/392 (59%), Positives = 294/392 (75%), Gaps = 4/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ ++FT NFGPQHPAAHGV R +LE++GE+VER +PHIG LHRGTEKLIE KT+LQA+PY
Sbjct: 7 QIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGSLHRGTEKLIEYKTYLQALPY 66
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDYV+ M QEHA++ AVE+LL E+P+R Q IRVL+ EI RI +HLL +TT AMDVG
Sbjct: 67 SDRLDYVSTMAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRISNHLLALTTHAMDVG 126
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A TP LW FEEREKL+ FYER SG+RMHA++ RPGGV QD+P L DI + F S +
Sbjct: 127 ASTPSLWAFEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCRDIDSFTQQFASRI 186
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+++ ++ TGNRI+KQR V+IGTV + A WGFSGVM+RG G WD R++ PY+ + + D
Sbjct: 187 DELEEMSTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGPGVCWDSRRAAPYDVHDQSD 246
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
D+P+G GD YDRY +R+ EMR+S++II QC N++ G + A D K+ PP R M
Sbjct: 247 PDVPVGTRGDRYDRYCIRIEEMRQSMRIIWQCPNKI----PSGMIKADDRKLCPPSRCRM 302
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K SMES IHHF+LYTEG+ VP Y AVEAPKGEFGV+L+S+G N+PYR KIRAPG AH
Sbjct: 303 KLSMESSIHHFELYTEGFSVPAPSTYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGSAH 362
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Q ++ + K H ADV I+G+ DIV GEVDR
Sbjct: 363 SQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 394
>gi|322417697|ref|YP_004196920.1| NADH dehydrogenase I subunit D [Geobacter sp. M18]
gi|320124084|gb|ADW11644.1| NADH dehydrogenase I, D subunit [Geobacter sp. M18]
Length = 794
Score = 405 bits (1040), Expect = e-111, Method: Composition-based stats.
Identities = 172/396 (43%), Positives = 238/396 (60%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
D+ + +N GPQHP HGV+R +L+L GE + +D IG HRG EK+ E + + Q
Sbjct: 403 FDRVDDETLILNLGPQHPGTHGVIRFVLKLSGEEIVDMDTDIGYHHRGAEKIGERQNWHQ 462
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
VPY DR+DY+A + AY +VEKL GIEIP R IRV+ E+ RI +HL+ + T A
Sbjct: 463 YVPYTDRIDYLAGVQNNLAYVNSVEKLCGIEIPDRAIYIRVMLCELFRIANHLVWLGTFA 522
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA+TP + F +REK+ E +G RMH A+FR GGV +D+P E + + D F
Sbjct: 523 ADLGAMTPVFYTFTDREKIFDIVEAITGGRMHPAWFRIGGVAEDLPEGWQEKVQAFLDWF 582
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P L + LLTGN IF R + + L+ A WG SG +R G WDLRK PY Y
Sbjct: 583 PPRLAEYDKLLTGNPIFTARLKGVSAITLDQALEWGISGPNLRACGFDWDLRKKMPYSGY 642
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+F++ + GDC+ RYLVRM EMR+S I++Q + + G G + D + V P+
Sbjct: 643 DRFNFEVATAQGGDCFARYLVRMEEMRQSFSIVKQALAGMPG----GRWISGDYRYVLPQ 698
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ D +ESLIHHF T G P GE YA +EAPKGE G + +SDG + YR +IR P
Sbjct: 699 KRDTLNDIESLIHHFVNSTRGMSPPKGECYAPIEAPKGECGYFAVSDGLHTAYRMRIRTP 758
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AH+Q++ L +G +AD AI+GS+D V ++DR
Sbjct: 759 SFAHIQSLPVLSRGWLVADFLAIIGSIDFVLADLDR 794
>gi|295837122|ref|ZP_06824055.1| NADH dehydrogenase (quinone), D subunit [Streptomyces sp. SPB74]
gi|197697232|gb|EDY44165.1| NADH dehydrogenase (quinone), D subunit [Streptomyces sp. SPB74]
Length = 442
Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats.
Identities = 177/412 (42%), Positives = 244/412 (59%), Gaps = 21/412 (5%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K +N GPQHP+ HGVLRLILE+DGE V IG LH G EK +E +T+ Q
Sbjct: 34 KADDERIIVNMGPQHPSTHGVLRLILEIDGETVTEARCGIGYLHTGIEKNLEFRTWTQGT 93
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R+DY+ P E AY L VE+LLGIE +P R ++RVL E+ RI SHL+ + T
Sbjct: 94 TFVTRMDYLTPFFNETAYCLGVERLLGIEDDVPDRASVVRVLLMELNRISSHLVAIATGG 153
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
M++G+ T ++GF +RE + +E +G RM+ A+ RPGG+ QD+P ++ + + +
Sbjct: 154 MELGSTTIMIYGFRDRELCLDLFELFTGLRMNHAFIRPGGLAQDLPAGSLDALAEFVKTM 213
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L + L TGN IF+ R ++G + L G +G ++R +G DLRK+QPY Y
Sbjct: 214 RHNLTEYDKLATGNPIFRARMKDVGHLDLTGCMALGATGPVLRSAGLPHDLRKAQPYCGY 273
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
DFDIP D Y R+L+RM EMRES+++I QC RL GPV +D KI P
Sbjct: 274 ETYDFDIPTDDGCDSYGRFLIRMAEMRESLRVIEQCAERLRE---PGPVMVADKKIAWPA 330
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
R M SME+LIHHFKL TEG+ VP G+ YAAVE+ KGE G ++
Sbjct: 331 QLAQGPDGIGNSLDHIREIMGTSMEALIHHFKLVTEGFRVPPGQAYAAVESAKGELGAHV 390
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +P+R R P + +LQA+ +C+G Q+ADV + S+D V G VDR
Sbjct: 391 VSDGGTRPFRVHFRDPSFTNLQAVAAMCEGGQVADVIVAVASIDPVMGGVDR 442
>gi|269128610|ref|YP_003301980.1| NADH dehydrogenase I subunit D [Thermomonospora curvata DSM 43183]
gi|268313568|gb|ACY99942.1| NADH dehydrogenase I, D subunit [Thermomonospora curvata DSM 43183]
Length = 449
Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats.
Identities = 181/413 (43%), Positives = 243/413 (58%), Gaps = 20/413 (4%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ +N GPQHP+ HGVLRLIL LDGE V+ +IG LH G EK +E +T+ Q
Sbjct: 39 EDGSDERLVVNMGPQHPSTHGVLRLILTLDGETVDECRVNIGYLHTGIEKNMEFRTWAQG 98
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ R+DY++P+ E AY +AVEKLLGI IP R Q+IRV+ E+ RI SHL+ + T
Sbjct: 99 PAFCTRMDYLSPIFNETAYCMAVEKLLGITDQIPERAQIIRVMMMELNRISSHLVAIATF 158
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
+++GA T L GF ERE + +E +G RM+ AY RPGGV QDI + + D
Sbjct: 159 GLELGATTVMLNGFIEREYALDVFEEITGLRMNMAYVRPGGVAQDIGHGGFTKVREFLDR 218
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
P + + L+ N +F R +I + LE G +G ++R +G WDLRK+QPY
Sbjct: 219 MPGRIKQLRKLMDANPVFLARTKDIAYLDLEGCMALGVTGPVLRATGLPWDLRKTQPYCG 278
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + +F++ D Y RYLVRM EM ES+KII QC++RL GPV D KI P
Sbjct: 279 YEKYEFEVATQDTCDVYGRYLVRMQEMEESLKIIEQCLDRL--SVTKGPVMIEDKKIGWP 336
Query: 300 K----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVY 343
M SME+LIHHFKL TEG+ VP G+ YAAVE+P+GE GV+
Sbjct: 337 AQLAIGTDGMGNSPRHIAHIMGTSMEALIHHFKLVTEGFRVPAGQAYAAVESPRGELGVH 396
Query: 344 LISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++SDGG +PYR R P + +LQA + +G +ADV A + S+D V G VDR
Sbjct: 397 VVSDGGPRPYRVHFRDPSFTNLQATPAMTEGGMVADVIAAVASIDPVMGGVDR 449
>gi|326329613|ref|ZP_08195935.1| NADH dehydrogenase (quinone), D subunit [Nocardioidaceae bacterium
Broad-1]
gi|325952609|gb|EGD44627.1| NADH dehydrogenase (quinone), D subunit [Nocardioidaceae bacterium
Broad-1]
Length = 438
Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats.
Identities = 174/414 (42%), Positives = 242/414 (58%), Gaps = 19/414 (4%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ K +N GPQHP+ HGVLRLILEL+GE V IG LH G EK +E +++ Q
Sbjct: 26 LKDVKDERIVVNMGPQHPSTHGVLRLILELEGETVTEARAGIGYLHTGIEKNMEFRSWTQ 85
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTT 118
+ R+DY++P+ E AY L VEKLLGI E+P + +IRV+ E+ RI SHL+ + T
Sbjct: 86 GTTFVTRMDYLSPIFNETAYVLGVEKLLGIGDEVPEKADVIRVMLMELNRISSHLVAIAT 145
Query: 119 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
M++GALT GF ERE + +E +G RM+ AY RPGGV QD+P V + + +
Sbjct: 146 GGMELGALTVMTIGFRERELCLDLFEFITGLRMNHAYIRPGGVAQDVPEGTVARVSEFIE 205
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
+ L++ + L N IFK R +G + LE G +G ++R +G WDLRK+QPY
Sbjct: 206 LMKTRLSEYAALCNANPIFKGRLEQVGYLDLEGCLALGLTGPILRSTGYPWDLRKTQPYS 265
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
Y + DF++ D Y R+ VR+ EM ES++I+ Q + RL PV +D KI
Sbjct: 266 GYQDYDFEVITWDTCDSYGRFRVRLAEMWESLRIMEQALKRLKD-LHGAPVMVADKKIAW 324
Query: 299 PK----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGV 342
P R M SME+LIHHFKL TEG+ VP G+ YAA+E+P+GE G
Sbjct: 325 PSQLSVGPDGQGNSLDHIRHIMGESMEALIHHFKLVTEGFRVPAGQAYAAIESPRGELGA 384
Query: 343 YLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+++SDGG KP+R R P + +LQA + +G +ADV + S+D V G VDR
Sbjct: 385 HVVSDGGTKPFRVHFRDPSFTNLQATSVMSEGGMVADVIVAIASIDPVMGGVDR 438
>gi|169629223|ref|YP_001702872.1| NADH dehydrogenase subunit D [Mycobacterium abscessus ATCC 19977]
gi|218534421|sp|B1MPG7|NUOD_MYCA9 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|169241190|emb|CAM62218.1| NADH-quinone oxidoreductase, D subunit NuoD [Mycobacterium
abscessus]
Length = 432
Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats.
Identities = 180/409 (44%), Positives = 246/409 (60%), Gaps = 22/409 (5%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+N GPQHP+ HGVLRLILE++GE V V IG LH G EK +E +T+ Q V +
Sbjct: 28 DERIVVNMGPQHPSTHGVLRLILEIEGETVTDVRCGIGYLHTGIEKNLEYRTWTQGVTFV 87
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
R+DY++P E AY L VE+LLGI EIP R +IRVL E+ RI SHL+ + T M++
Sbjct: 88 TRMDYLSPFFNETAYCLGVEQLLGIADEIPERANVIRVLMMELNRISSHLVALATGGMEL 147
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+T GF ERE ++ +E +G RM+ AY RPGG+ QD+P +++ + P
Sbjct: 148 GAMTAMFLGFREREMILKVFEAITGLRMNHAYVRPGGLAQDLPDGAEQEVRDLLEILPGR 207
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L D+ +LL N I+K R +G + L G +G ++R +G A DLR++QPY Y
Sbjct: 208 LRDMENLLNENYIWKARTQGVGYLDLTGCMALGITGPVLRATGLAHDLRRAQPYCGYENY 267
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK--- 300
DFD+ + D Y RYL+R+ EM ES+KI +QCV+RL GPV D KI P
Sbjct: 268 DFDVVTHQDCDSYGRYLIRVKEMHESIKIAQQCVDRLR----PGPVMVDDKKIAWPADLA 323
Query: 301 -------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISD 347
M SME LIHHFKL TEG VP G+VY A+E+P+GE GV+++SD
Sbjct: 324 SGPDGLGNSPKHIAKIMGTSMEGLIHHFKLVTEGVRVPAGQVYVAIESPRGELGVHMVSD 383
Query: 348 GGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GG +PYR R P + +LQ++ +C+G +AD+ A + S+D V G VDR
Sbjct: 384 GGTRPYRVHFRDPSFTNLQSVAAMCEGAMVADLIAAVASIDPVMGGVDR 432
>gi|148262416|ref|YP_001229122.1| trifunctional NADH dehydrogenase I subunit B/C/D [Geobacter
uraniireducens Rf4]
gi|218528048|sp|A5GCZ4|NUBCD_GEOUR RecName: Full=NADH-quinone oxidoreductase subunit B/C/D; AltName:
Full=NADH dehydrogenase I subunit B/C/D; AltName:
Full=NDH-1 subunit B/C/D
gi|146395916|gb|ABQ24549.1| NADH dehydrogenase subunit D / NADH dehydrogenase subunit B / NADH
dehydrogenase subunit C [Geobacter uraniireducens Rf4]
Length = 793
Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats.
Identities = 171/396 (43%), Positives = 240/396 (60%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
D+ + +N GPQHP HG++R IL+L GE + +D IG HRG EK+ E + + Q
Sbjct: 402 FDRLDEETLILNLGPQHPGTHGIIRFILKLKGEEIVDMDTDIGFHHRGAEKMGERQHWNQ 461
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY DR+DY+A + AY +VE+L I +P R IRV+ +E+ RI SHL+ + T A
Sbjct: 462 FIPYTDRIDYLAGVQNNLAYVNSVERLCSITVPDRAVYIRVMLAELFRIASHLVWLGTFA 521
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
DVGA+TP + F +REK+ E +G RMH A+FR GGV +D+P E + + F
Sbjct: 522 ADVGAMTPVFYTFTDREKIFDIVEMITGGRMHPAWFRIGGVAEDLPEGWEEPVKAFLAWF 581
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P L + +LL GN IFK R +G + +A WG SG +R G WDLRK PY Y
Sbjct: 582 PPRLKEYEELLNGNPIFKARLKGVGAIGQAEAIDWGVSGPNLRACGLEWDLRKKMPYAGY 641
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
FD+ + + GDCY RYLVR+ EM++S+ I+RQC++ + G G D + V P+
Sbjct: 642 ERFHFDVAVAEGGDCYARYLVRIEEMKQSLHIVRQCLHDMPG----GRWITDDYRFVLPQ 697
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ D +ESLIHHF T G P GE Y A+EAPKGE G +++SDG N PYR +I+ P
Sbjct: 698 KRDTLNDIESLIHHFVNSTRGMAPPPGECYTAIEAPKGENGYFVVSDGINIPYRVRIKTP 757
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ H+QA+ + KG +AD AI+GS+D V ++DR
Sbjct: 758 SFPHIQALPLMSKGWLVADFLAIIGSIDFVLADLDR 793
>gi|39998533|ref|NP_954484.1| trifunctional NADH dehydrogenase I subunit B/C/D [Geobacter
sulfurreducens PCA]
gi|81700831|sp|Q746S4|NUBCD_GEOSL RecName: Full=NADH-quinone oxidoreductase subunit B/C/D; AltName:
Full=NADH dehydrogenase I subunit B/C/D; AltName:
Full=NDH-1 subunit B/C/D
gi|39985480|gb|AAR36834.1| NADH dehydrogenase I, B/C/D subunits [Geobacter sulfurreducens PCA]
gi|298507477|gb|ADI86200.1| NADH dehydrogenase I, B/C/D subunits [Geobacter sulfurreducens
KN400]
Length = 792
Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats.
Identities = 166/396 (41%), Positives = 240/396 (60%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
D+ + +N GPQHP HG++R +L+LDGE + +D IG HRG EK+ E + + Q
Sbjct: 401 FDRIDEETLILNLGPQHPGTHGIIRFVLKLDGEEIVDMDTDIGYHHRGAEKIGERQHWNQ 460
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY DR+DY+A + AY +VE+L GI +P RG IRV+ +E+ RI +HL+ + T A
Sbjct: 461 FIPYTDRIDYLAGVQNNLAYVNSVERLCGITVPDRGIAIRVMLAELFRIANHLVWLGTFA 520
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
DVGA+TP + F +REK+ E +G RMH ++FR GGV D+P + + D
Sbjct: 521 ADVGAMTPVFYTFTDREKIFDIVEMVTGGRMHPSWFRIGGVADDLPEGWDGAVKAFLDWM 580
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P L + DLL GN IF++R +G + ++A WG +G +R G WDLRK PY Y
Sbjct: 581 PGRLKEYEDLLKGNPIFRERLKGVGVITGDEALEWGITGPNLRACGVEWDLRKKIPYNGY 640
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
F++P + GDC+ RY VR+ E+R+S+ I+RQC + G D + V PK
Sbjct: 641 QHFHFEVPTEEGGDCWARYRVRIEEIRQSLHIVRQCWKEMPA----GRWITDDYRYVLPK 696
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ D +ESLIHHF T G P GE Y+A+EAPKGE G +++SDG N PYR +I+ P
Sbjct: 697 KRDALHDIESLIHHFINATRGMAPPKGENYSAIEAPKGENGYFVVSDGLNVPYRVRIKTP 756
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ H+QA+ + +G +AD AI+GS+D V ++DR
Sbjct: 757 SFPHIQALPLMSRGWLVADFLAIIGSIDFVLADLDR 792
>gi|46446196|ref|YP_007561.1| putative NADH-ubiquinone oxidoreductase chain C/D [Candidatus
Protochlamydia amoebophila UWE25]
gi|81627439|sp|Q6MDR3|NUOD_PARUW RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|46399837|emb|CAF23286.1| putative NADH-ubiquinone oxidoreductase chain C/D [Candidatus
Protochlamydia amoebophila UWE25]
Length = 402
Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats.
Identities = 159/394 (40%), Positives = 245/394 (62%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++ +N GPQHP+ HGVLRL L L+GE+V DP IG LH G EK E++T+ Q
Sbjct: 13 EESGDVMELNLGPQHPSTHGVLRLKLRLEGEVVLSCDPVIGYLHTGVEKECESRTYHQVF 72
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
DRLDY++ +E A+A A+E+L+ IE+P R Q IR++ E+ RI SHLL T A++
Sbjct: 73 TLVDRLDYLSGPAEEQAFAGALERLMNIEVPERAQTIRIILLELSRIASHLLWAGTSALE 132
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+ + ++ F EREK++ +E+ SG+RM + +R GG+ +D+ + + + + F
Sbjct: 133 LNMSSVFMYSFAEREKILDLFEQVSGARMFPSLWRIGGLAKDLNSDFISHLKEFISGFQK 192
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++ LLT N ++ +R + + E + +G ++R SG ++D+RK+ PY Y
Sbjct: 193 IWKELDRLLTDNFVWCKRLQGVAVIDQEICKQYMCTGPVLRASGISYDIRKAYPYLGYEN 252
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+FDIP GD Y RYLVRM EM +S+ II Q + RL K G V +D K+ P R
Sbjct: 253 YNFDIPTHIDGDSYARYLVRMEEMLQSISIIEQAIARL----KPGVVLTNDRKVALPPRK 308
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
++ RSME++IH FKL +EG H PVG VY VE+ +GE G Y+ISDG KPYR ++R+P +
Sbjct: 309 ELARSMEAVIHQFKLISEGLHPPVGSVYNCVESARGELGHYVISDGTPKPYRLRVRSPSF 368
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+H++ ++ + +GH ++DV + S+D + G+VDR
Sbjct: 369 SHVEVLKKVLRGHVISDVVVAIASVDPILGDVDR 402
>gi|152993805|ref|YP_001359526.1| NADH dehydrogenase subunit D [Sulfurovum sp. NBC37-1]
gi|229891303|sp|A6QCG0|NUOD_SULNB RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|151425666|dbj|BAF73169.1| NADH-quinone oxidoreductase, chain D [Sulfurovum sp. NBC37-1]
Length = 409
Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats.
Identities = 178/395 (45%), Positives = 241/395 (61%), Gaps = 3/395 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++ + INFGPQHP+AHG LRL+LEL+GE V + P IG LHRG EK+ E T+ + +
Sbjct: 17 ERDDNTMVINFGPQHPSAHGQLRLVLELEGEQVVKAYPDIGYLHRGIEKMAENMTYNEFL 76
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DRLDY+A +AYALAVEKLLGIE P R Q+IR + EI R++SHL + T A+D
Sbjct: 77 PTTDRLDYIASTANNYAYALAVEKLLGIEAPRRAQVIRTMLLEINRLISHLFFIATHALD 136
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA++ L+ F ERE M E G+R+ + R GGV D+P +E + WCD
Sbjct: 137 VGAMSVFLYAFREREFGMDLMEDYCGARLTHSAVRIGGVPLDLPNGWIEKMISWCDKVDH 196
Query: 183 ALND-ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
L + LL NRI+K R ++G + EDA WG +G M+RGSG WD+RK +PYE Y
Sbjct: 197 ELEHTYNALLQENRIWKMRLEDVGVISAEDALSWGCTGPMLRGSGVNWDIRKEEPYELYG 256
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
ELDFDIP+ D Y RY + M EM +S +I+RQ V++ + A P+ + +
Sbjct: 257 ELDFDIPVSDRCDSYGRYRLYMEEMHQSTRILRQLVSKYKESEPQ--LMAHAPQYISAPK 314
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
++ +L+ HF L T+G P GEVY E+PKGE G Y+ S+G YR K RAP
Sbjct: 315 EEIMTQNYALMQHFVLVTQGMRPPKGEVYVPTESPKGELGFYIKSEGEPYAYRLKCRAPS 374
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ H ++ + G +ADV I+GS +IVFGEVDR
Sbjct: 375 FFHTGLLQEILVGTYIADVVTIIGSTNIVFGEVDR 409
>gi|269926646|ref|YP_003323269.1| NADH dehydrogenase I, D subunit [Thermobaculum terrenum ATCC
BAA-798]
gi|269790306|gb|ACZ42447.1| NADH dehydrogenase I, D subunit [Thermobaculum terrenum ATCC
BAA-798]
Length = 400
Score = 403 bits (1037), Expect = e-110, Method: Composition-based stats.
Identities = 175/398 (43%), Positives = 261/398 (65%), Gaps = 6/398 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + + +N GPQHP+ HGVLR++L+LDGE +++ P++G LHRGTEKL E + Q
Sbjct: 7 IHQLQEEEMELNMGPQHPSTHGVLRVVLKLDGETIKKATPYVGYLHRGTEKLGEVHKYYQ 66
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTT 118
VP+ DR+DY+A + AY AVEKLLGIE IP R + +RV+ +E+ RI SHL+ + T
Sbjct: 67 NVPHTDRMDYLAAPSNNLAYVQAVEKLLGIEDEIPERAKYMRVIMAELARIASHLVWLGT 126
Query: 119 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
AMDVGA++ L+ F ERE +M +E G+R+ + + GG+ D+P ++ + +
Sbjct: 127 HAMDVGAISVFLYCFREREMIMSLFEEYCGARLTTSMMKIGGMPADLPDNWLDHLEDFLR 186
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
P + + LLT N I+ +R +G + EDA +G +G +RGSG +D+RK+QPY+
Sbjct: 187 IMPRRIGEYEALLTENPIWIERTRGVGVISAEDAVSFGLTGACLRGSGVNYDVRKAQPYQ 246
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
Y +DFD+P+G +GD YDRYLVR+ EM+++++IIRQ V+++ GP A P+ V
Sbjct: 247 VYDRIDFDVPLGSNGDVYDRYLVRVEEMKQALRIIRQAVDQMPD----GPYVADLPEYVL 302
Query: 299 PKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
P++ D ++E HF L G++ P GE+Y AVEAPKGE G Y++SDG NKPYR +R
Sbjct: 303 PRKVDAMTTIEGQTRHFVLTIHGFNAPPGEIYKAVEAPKGELGYYIVSDGSNKPYRMHVR 362
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AP Y +L ++ + +G + DV A++GS+DIV GEVDR
Sbjct: 363 APSYYNLASLPRMSEGGSVQDVVAVIGSIDIVLGEVDR 400
>gi|86149497|ref|ZP_01067728.1| NADH-quinone oxidoreductase, D subunit [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|85840279|gb|EAQ57537.1| NADH-quinone oxidoreductase, D subunit [Campylobacter jejuni subsp.
jejuni CF93-6]
Length = 408
Score = 403 bits (1037), Expect = e-110, Method: Composition-based stats.
Identities = 177/394 (44%), Positives = 246/394 (62%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ IN GPQHP+AHG LRLILELDGE V + P IG +HRG EK+ E + + +
Sbjct: 17 EQEDSKMIINLGPQHPSAHGNLRLILELDGEQVVKARPCIGYMHRGMEKMAENMIYQEFI 76
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DR+DY+A +AY AVEKL G+EIP R +IR++ E+ RI SHLL + T A+D
Sbjct: 77 PTTDRMDYIAASANNYAYCAAVEKLCGLEIPRRAAVIRMILLELNRITSHLLWLATHALD 136
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA++ L+ F ERE ++ E+ G+R+ + R GGV D+P +E++ +CD FP+
Sbjct: 137 IGAMSVFLYCFREREYVLDLIEKYCGARLTHSSMRIGGVMLDLPENYLEEMLAFCDKFPN 196
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L D DLL NRI++ R N+G V E A WG +GVM+RGSG +D+RK +PY Y+E
Sbjct: 197 DLKDYEDLLDDNRIWRLRTENVGVVTKEQALNWGCTGVMLRGSGIKYDIRKEEPYLLYNE 256
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++F +P GD Y RY V M E RES+KI+RQC +L K+ + A+ P+ V +
Sbjct: 257 VEFGVPYATQGDSYARYKVYMQEFRESLKILRQCA--MLYKDTSPEILATHPEYVSASKE 314
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ SL+ HF L T+G GEVY E+PKGE G ++ SDG +PYR K R P Y
Sbjct: 315 QILTQNYSLMQHFVLITQGLKPSKGEVYVPTESPKGELGFFIHSDGTGRPYRLKARTPSY 374
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H E + G LADV AI+G+++IV GE+DR
Sbjct: 375 WHCAFFEEMLVGTYLADVVAIMGNVNIVLGEIDR 408
>gi|262200417|ref|YP_003271625.1| NADH dehydrogenase I subunit D [Gordonia bronchialis DSM 43247]
gi|262083764|gb|ACY19732.1| NADH dehydrogenase I, D subunit [Gordonia bronchialis DSM 43247]
Length = 446
Score = 403 bits (1037), Expect = e-110, Method: Composition-based stats.
Identities = 182/409 (44%), Positives = 245/409 (59%), Gaps = 22/409 (5%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+N GPQHP+ HGVLRLILE++GE V IG LH G EK +E + + Q V +
Sbjct: 42 DERIVVNMGPQHPSTHGVLRLILEIEGETVTEARCGIGYLHTGIEKNLEFRNWTQGVTFV 101
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
R+DY++P E AY L VEKLLGI +IP R +IRV+ E+ RI SHL+ + T M++
Sbjct: 102 TRMDYLSPFFNETAYCLGVEKLLGITDDIPERATVIRVMMMELNRITSHLVALATGGMEL 161
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+T GF ERE ++ +E +G RM+ AY RPGGV QD+P + V+ + + P
Sbjct: 162 GAVTAMFLGFREREMILDLFELITGLRMNHAYIRPGGVAQDLPSDGVDKVAEVLEILPGR 221
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L+++ DLL N I+K R +G + L G +G ++R +G DLRKSQPY Y
Sbjct: 222 LDELGDLLNDNYIWKARTQGVGYLDLTGCMALGITGPVLRSTGLPHDLRKSQPYCGYENY 281
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK--- 300
DFD+ D Y RYL+R+ EMRES+KI+RQC+ RL GPV +D KI P
Sbjct: 282 DFDVITDTTCDSYGRYLIRVKEMRESIKIVRQCLERLR----PGPVMVADRKIAWPADLA 337
Query: 301 -------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISD 347
M SME+LIHHFKL TEG VP G+ Y AVE+P+GE GV+++SD
Sbjct: 338 LGPDGLGNSPEHIARIMGTSMEALIHHFKLVTEGMRVPAGQCYVAVESPRGELGVHMVSD 397
Query: 348 GGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GG +PYR R P + +LQA+ +C+G +ADV + S+D V G VDR
Sbjct: 398 GGTRPYRVHYRDPSFTNLQAVAAMCEGGMVADVITAVASIDPVMGGVDR 446
>gi|121612143|ref|YP_001001216.1| NADH dehydrogenase subunit D [Campylobacter jejuni subsp. jejuni
81-176]
gi|167006109|ref|ZP_02271867.1| NADH dehydrogenase subunit D [Campylobacter jejuni subsp. jejuni
81-176]
gi|229891287|sp|A1W1H5|NUOD_CAMJJ RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|87249949|gb|EAQ72908.1| NADH-quinone oxidoreductase, D subunit [Campylobacter jejuni subsp.
jejuni 81-176]
Length = 408
Score = 403 bits (1037), Expect = e-110, Method: Composition-based stats.
Identities = 178/394 (45%), Positives = 247/394 (62%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ IN GPQHP+AHG LRLILELDGE V + P IG +HRG EK+ E + + +
Sbjct: 17 EQEDSKMIINLGPQHPSAHGNLRLILELDGEQVVKARPCIGYMHRGMEKMAENMIYQEFI 76
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DR+DY+A +AY AVEKL G+EIP R +IR++ E+ RI SHLL + T A+D
Sbjct: 77 PTTDRMDYIAASANNYAYCAAVEKLCGLEIPRRAAVIRMILLELNRITSHLLWLATHALD 136
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA++ L+ F ERE ++ E+ G+R+ + R GGV D+P +E++ +CD FP+
Sbjct: 137 IGAMSVFLYCFREREYVLDLIEKYCGARLTHSSMRIGGVMLDLPENYLEEMLAFCDKFPN 196
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L D DLL NRI++ R N+G V E A WG +GVM+RGSG +D+RK +PY Y+E
Sbjct: 197 DLKDYEDLLDDNRIWRLRTENVGVVTKEQALNWGCTGVMLRGSGIKYDIRKEEPYLLYNE 256
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++F +P GD Y RY V M E RES+KI+RQC +L K+ + A+ P+ V +
Sbjct: 257 VEFGVPYATQGDSYARYKVYMQEFRESLKILRQCA--MLYKDTSPEILATHPEYVSASKE 314
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ SL+ HF L T+G P GEVY E+PKGE G ++ SDG +PYR K R P Y
Sbjct: 315 QILTQNYSLMQHFVLITQGLKPPKGEVYVPTESPKGELGFFIHSDGTERPYRLKARTPSY 374
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H E + G LADV AI+G+++IV GE+DR
Sbjct: 375 WHCAFFEEMLVGTYLADVVAIMGNVNIVLGEIDR 408
>gi|247589125|ref|YP_002608197.2| NADH dehydrogenase subunit 7 [Carica papaya]
gi|243010640|gb|ACB20486.2| NADH dehydrogenase subunit 7 [Carica papaya]
Length = 394
Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats.
Identities = 231/393 (58%), Positives = 293/393 (74%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
++ +FT N GPQHPAAHGV R +LE++GE+VER +PHIG LHRGTEKLIE KT+LQA+P
Sbjct: 6 RQITNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGSLHRGTEKLIEYKTYLQALP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR DYV+ M QEHA++ AVE+LL E+P+R Q IRVL+ EI RI +H L +TT AMDV
Sbjct: 66 YSDRSDYVSMMAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRISNHSLALTTHAMDV 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP LW FEEREKL+ FYER SG+RMHA++ RPGGV QD+P L DI + F S
Sbjct: 126 GASTPFLWAFEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCRDIDSFTQQFASR 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
++++ ++ TGNRI+KQR V+IGTV + A WGFSGVM+RG G WD R++ PY+ + +
Sbjct: 186 IDELEEMSTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGPGVCWDSRRAAPYDVHDQS 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D D+P+G GD YDRY +R+ EMR+SV+II QC+N++ G + A D K+ PP R
Sbjct: 246 DPDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQCLNQM----PSGLIKADDRKLCPPSRCR 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK SMES IHHF+LYTEG+ VP Y AVEAPKGEFGV+L+S+G N+PYR KIRAPG A
Sbjct: 302 MKLSMESSIHHFELYTEGFSVPAPSTYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGSA 361
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H Q ++ + K H ADV I+G+ DIVFGEVDR
Sbjct: 362 HSQGLDSMSKHHMPADVVTIIGTQDIVFGEVDR 394
>gi|260434177|ref|ZP_05788148.1| NADH dehydrogenase (quinone), d subunit [Silicibacter
lacuscaerulensis ITI-1157]
gi|260418005|gb|EEX11264.1| NADH dehydrogenase (quinone), d subunit [Silicibacter
lacuscaerulensis ITI-1157]
Length = 367
Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats.
Identities = 275/369 (74%), Positives = 317/369 (85%), Gaps = 3/369 (0%)
Query: 28 LELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKL 87
LELDGEIVER DPHIGLLHRGTEKL+E++T+LQ +PYFDRLDYVAPMNQEHA+ LA+EKL
Sbjct: 2 LELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVAPMNQEHAWCLAIEKL 61
Query: 88 LGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERAS 147
G+E+P R LIRVLYSEIGRIL+HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERA
Sbjct: 62 TGVEVPRRASLIRVLYSEIGRILNHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERAC 121
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTV 207
G+R+HAAYFRPGGVHQD+PPEL++DI W SFP+ L+DI LLT NRIFKQRN +IG V
Sbjct: 122 GARLHAAYFRPGGVHQDLPPELLDDIEAWSHSFPAVLDDIDGLLTENRIFKQRNCDIGVV 181
Query: 208 KLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMR 267
ED +GFSGVM+RGSG AWDLR++QPYECY E +F IP+GK+GDCYDRYLVRM EMR
Sbjct: 182 TEEDIQQFGFSGVMVRGSGLAWDLRRAQPYECYDEFEFQIPVGKNGDCYDRYLVRMEEMR 241
Query: 268 ESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVG 327
+SV IIRQ + +L + KI PPKR+DMK SMESLIHHFKLYTEG+HVP G
Sbjct: 242 QSVSIIRQAIAKLRDCPGDV---LARGKITPPKRSDMKTSMESLIHHFKLYTEGFHVPAG 298
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSL 387
EVYAAVEAPKGEFGVYL++DG NKPYR K+RAPGY HLQAM+ + KGHQLADV+AI+G++
Sbjct: 299 EVYAAVEAPKGEFGVYLVADGTNKPYRAKLRAPGYLHLQAMDHVAKGHQLADVAAIIGTM 358
Query: 388 DIVFGEVDR 396
D+VFGE+DR
Sbjct: 359 DVVFGEIDR 367
>gi|311897893|dbj|BAJ30301.1| putative NADH-quinone oxidoreductase subunit D [Kitasatospora setae
KM-6054]
Length = 442
Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats.
Identities = 179/411 (43%), Positives = 249/411 (60%), Gaps = 22/411 (5%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+N GPQHP+ HGVLRLILE+DGE V IG LH G EK +E ++++Q
Sbjct: 36 ADDERIIVNMGPQHPSTHGVLRLILEIDGETVTEARCGIGYLHTGIEKNMEFRSWVQGTT 95
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+ R+DY+ P+ E AY LAVEKLLGI ++P R +IRVL E+ RI SHL+ + T M
Sbjct: 96 FVTRMDYLTPLYNETAYCLAVEKLLGITADVPERATVIRVLMMELNRISSHLVALATGGM 155
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
++G+ T ++GF +RE ++ +E +G RM+ AY RPGG+ QD+PP V+ I +
Sbjct: 156 EIGSTTLMIYGFRDREVVLDIFELVTGLRMNHAYVRPGGLAQDLPPGAVDKIREGVNLLR 215
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
S +++ L T N +FK R V++G + L G +G ++R +G DLRKS PY Y
Sbjct: 216 SRMHEYDKLATDNPVFKARLVDVGFLDLPGCLALGATGPILRATGLPHDLRKSDPYCGYE 275
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK- 300
DFD+ + D Y R+L+R+ EM++S++I+ QC+ RL GPV +D KI P
Sbjct: 276 TYDFDVAVADTADSYGRFLIRLEEMKQSLRIVEQCLERLR----PGPVMVADKKIAWPSQ 331
Query: 301 ---------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLI 345
R M SME+LIHHFKL TEG+ VPVG+ YAAVE+PKGE GV+++
Sbjct: 332 LAVGPDGMGNSLDHIRKIMGTSMEALIHHFKLVTEGFKVPVGQAYAAVESPKGELGVHVV 391
Query: 346 SDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
SDGG +PYR R P + +LQ M +C+G LADV + +D V G VDR
Sbjct: 392 SDGGTRPYRVHFRDPSFTNLQTMAAMCEGAPLADVIVSVAGIDPVMGGVDR 442
>gi|226227065|ref|YP_002761171.1| NADH-quinone oxidoreductase chain D [Gemmatimonas aurantiaca T-27]
gi|226090256|dbj|BAH38701.1| NADH-quinone oxidoreductase chain D [Gemmatimonas aurantiaca T-27]
Length = 394
Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats.
Identities = 175/391 (44%), Positives = 240/391 (61%), Gaps = 4/391 (1%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
S IN GPQHPA HGVLRL+LELDGE V R PHIG LH G EK+ E + + Q +P+
Sbjct: 8 SDHMLINIGPQHPATHGVLRLVLELDGETVVRCIPHIGYLHCGFEKIGEYRQYNQIIPWT 67
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DR DY+ A++L E+L G+ + R +++RV+ E+ RI+SH + + T ++D+GA
Sbjct: 68 DREDYLNSPGNNVAFSLGAERLFGVGMTERCKVLRVILMELSRIISHNVWMGTTSVDIGA 127
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
TP LW F+ERE + E G+R+ R GG+ DIP ++ + + F L
Sbjct: 128 FTPFLWMFQERENVYNLLEGWVGARLTTTATRVGGMAADIPDGWLDGLKAFLKGFTKTLE 187
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ +L N I+ R V +G + DA G SG M+R SG A+D+RK PY Y DF
Sbjct: 188 ESVRMLETNAIWAGRTVGLGAMSAHDAVNAGLSGPMLRASGVAYDVRKDFPYLDYETYDF 247
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
D+P+G GD YDR+LVR+ EMR+SV+II Q + RL GPV+ DP+++ P +
Sbjct: 248 DVPVGTTGDVYDRFLVRVEEMRQSVRIIEQAIKRLPD----GPVNIDDPRLILPPKHKAT 303
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
MES+IHHFKL EG P GE Y VE+PKGE G Y +SDG +KP R +IR P + +L
Sbjct: 304 SEMESMIHHFKLVMEGPRPPAGECYVPVESPKGEKGYYFVSDGTSKPVRWRIRPPSFVNL 363
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A+ + +GH L+DV AI S+DIV GE+DR
Sbjct: 364 SAIPKMVEGHLLSDVIAINASIDIVMGEIDR 394
>gi|166895611|ref|YP_001661405.1| NADH dehydrogenase subunit 7 [Cycas taitungensis]
gi|166706943|dbj|BAF98407.1| NADH dehydrogenase subunit 7 [Cycas taitungensis]
Length = 394
Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats.
Identities = 232/393 (59%), Positives = 293/393 (74%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
++ R+FT N GPQHPAAHGV R + E++GE+VER +PHIG LHRGTEK IE KT+LQA P
Sbjct: 6 ERIRNFTSNSGPQHPAAHGVSRSVSEMNGEVVERAEPHIGSLHRGTEKSIEYKTYLQASP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR DYV+ M QEHA++ AVEKLL E+P+R Q IRVL+ EI RI +H L +TT AMDV
Sbjct: 66 YSDRSDYVSMMAQEHAHSSAVEKLLNREVPLRAQYIRVLFREITRISNHSLALTTHAMDV 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP LW FEEREK + F+ER G+RMHA++ RPGGV QD+P L DI + F S
Sbjct: 126 GALTPSLWAFEEREKSLEFHERVPGARMHASFIRPGGVAQDLPLGLCRDIYSFTQQFASR 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ ++ TGNRI+KQR V+IGTV + A WGFSGVM+RGSG WDLRK+ PY+ + +
Sbjct: 186 IDESEEMSTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGSGVCWDLRKAAPYDAHDQS 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D D+P+G GDCYDRY +R+ EMR+S++II QC +R+ G + A D K+ PP R
Sbjct: 246 DSDVPVGTRGDCYDRYCIRIEEMRQSLRIIVQCPDRM----PSGMIKADDRKLCPPSRCQ 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
M+ SMESLIHHF+LYTEG+ VP Y AVEAPKGEFGV+L+S+G N+PYR KIRAPG+A
Sbjct: 302 MRLSMESLIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGFA 361
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H Q ++ + K H LADV I+G+ DIV GEVDR
Sbjct: 362 HSQGLDSMSKHHMLADVVTIIGTQDIVSGEVDR 394
>gi|325673382|ref|ZP_08153073.1| NADH-quinone oxidoreductase subunit D [Rhodococcus equi ATCC 33707]
gi|325555403|gb|EGD25074.1| NADH-quinone oxidoreductase subunit D [Rhodococcus equi ATCC 33707]
Length = 444
Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats.
Identities = 182/408 (44%), Positives = 244/408 (59%), Gaps = 22/408 (5%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GPQHP+ HGVLRLILE++GE V IG LH G EK +E + + Q V +
Sbjct: 41 ERIVVNMGPQHPSTHGVLRLILEIEGETVTEARCGIGYLHTGIEKNLEYRNWTQGVTFVT 100
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
R+DY++P E AY L VEKLL I IP R ++RVL E+ RI SHL+ + T M++G
Sbjct: 101 RMDYLSPFFNEVAYCLGVEKLLDITDRIPERATVVRVLLMELNRISSHLVALATGGMELG 160
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A+TP L+GF ERE ++ +E +G RM+ AY RPGG+ QD+P V + D P L
Sbjct: 161 AITPMLFGFRERELVLDIFEMITGLRMNHAYIRPGGLAQDLPDGAVAKVRELLDLMPRRL 220
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
D+ DLL N I+K R IG + L G +G ++R +G D+R+S PY Y +
Sbjct: 221 RDLEDLLNENPIWKARTRGIGYLDLTGCMALGVTGPVLRATGLPLDVRRSDPYCGYETYE 280
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK---- 300
FD+ DCY RYLVR+ EM ES+KI+ QC++RL GPV +D KI P
Sbjct: 281 FDVVTDTGSDCYGRYLVRVQEMAESLKIVEQCLDRLR----PGPVMVADKKIAWPADLAV 336
Query: 301 ------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG 348
R M SME LIHHFKL TEG+ VP G+VY VE+P+GE GV+++SDG
Sbjct: 337 GADGLGNSLEHIRRIMGTSMEELIHHFKLVTEGFRVPPGQVYVPVESPRGELGVHMVSDG 396
Query: 349 GNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G +P+R R P + +LQA+ +C+G +ADV A + S+D V G VDR
Sbjct: 397 GTRPFRVHYRDPSFTNLQAVAAMCEGGMVADVIASVASIDPVMGGVDR 444
>gi|312139312|ref|YP_004006648.1| NADH dehydrogenase (quinone) chain d nuod [Rhodococcus equi 103S]
gi|311888651|emb|CBH47963.1| NADH dehydrogenase (quinone) chain D NuoD [Rhodococcus equi 103S]
Length = 444
Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats.
Identities = 182/408 (44%), Positives = 244/408 (59%), Gaps = 22/408 (5%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GPQHP+ HGVLRLILE++GE V IG LH G EK +E + + Q V +
Sbjct: 41 ERIVVNMGPQHPSTHGVLRLILEIEGETVTEARCGIGYLHTGIEKNLEYRNWTQGVTFVT 100
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
R+DY++P E AY L VEKLL I IP R ++RVL E+ RI SHL+ + T M++G
Sbjct: 101 RMDYLSPFFNEVAYCLGVEKLLDITDRIPERATVVRVLLMELNRISSHLVALATGGMELG 160
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A+TP L+GF ERE ++ +E +G RM+ AY RPGG+ QD+P V + D P L
Sbjct: 161 AITPMLFGFRERELVLDIFEMITGLRMNHAYIRPGGLAQDLPDGAVAKVRELLDLMPRRL 220
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
D+ DLL N I+K R IG + L G +G ++R +G D+R+S PY Y +
Sbjct: 221 RDLEDLLNENPIWKARTRGIGYLDLTGCMALGVTGPVLRATGLPLDVRRSDPYCGYETYE 280
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK---- 300
FD+ DCY RYLVR+ EM ES+KI+ QC++RL GPV +D KI P
Sbjct: 281 FDVVTDTGSDCYGRYLVRVQEMAESLKIVEQCLDRLR----PGPVMVADKKIAWPADLAV 336
Query: 301 ------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG 348
R M SME LIHHFKL TEG+ VP G+VY VE+P+GE GV+++SDG
Sbjct: 337 GADGLGNSLEHIRRIMGTSMEELIHHFKLVTEGFRVPPGQVYVPVESPRGELGVHMVSDG 396
Query: 349 GNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G +P+R R P + +LQA+ +C+G +ADV A + S+D V G VDR
Sbjct: 397 GTRPFRVHYRDPSFTNLQAVAAMCEGGMVADVIASVASIDPVMGGVDR 444
>gi|319950454|ref|ZP_08024368.1| NADH dehydrogenase subunit D [Dietzia cinnamea P4]
gi|319435877|gb|EFV91083.1| NADH dehydrogenase subunit D [Dietzia cinnamea P4]
Length = 441
Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats.
Identities = 179/411 (43%), Positives = 252/411 (61%), Gaps = 22/411 (5%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+N GPQHP+ HGVLRLILE++GE V R IG LH G EK +E + + Q V
Sbjct: 35 ADDDRIVVNMGPQHPSTHGVLRLILEIEGETVTRASCGIGYLHTGIEKNLEYRYWTQGVT 94
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+ R+DY++P E A+ L VEKLLGI ++P R +IRV+ E+ RI SH++ + T A+
Sbjct: 95 FVTRMDYLSPFFNEVAFCLGVEKLLGISAQVPERASVIRVMLMELNRIASHMVALATGAL 154
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
++GA TP L+GF ERE ++ +E +G RM+ AY RPGGV QD+P E V + + P
Sbjct: 155 ELGASTPMLFGFRERELVLDVFEVITGLRMNHAYIRPGGVVQDLPDEAVPKVRELLEVMP 214
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+ ++ LL N I++ R ++G + L G +G ++R +G D+R+S PY Y
Sbjct: 215 GRIREMELLLRENPIWRMRLQDVGYLDLTGCMALGVTGPVLRATGLPHDVRRSDPYCGYE 274
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK- 300
+FD+ G DCYDR++VR+ EM+ES+KI+ QC++RL GPV DPKI P
Sbjct: 275 TYEFDVVTGSASDCYDRFVVRVDEMKESLKIVEQCLDRLA----PGPVMVDDPKIAWPAQ 330
Query: 301 ---------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLI 345
R M SME+LIHHFKL TEG+ VP G+VY VE+P+GE GV+++
Sbjct: 331 LKVGPDGLGNSAEHIRHIMDSSMEALIHHFKLVTEGFPVPPGQVYVPVESPRGELGVHMV 390
Query: 346 SDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
SDGG +PYR R P + +LQA+ +C+G +ADV A + S+D V G VDR
Sbjct: 391 SDGGTRPYRVHYRDPSFTNLQAVAAMCEGGMVADVIAAVASIDPVMGGVDR 441
>gi|330465205|ref|YP_004402948.1| NADH dehydrogenase subunit D [Verrucosispora maris AB-18-032]
gi|328808176|gb|AEB42348.1| NADH dehydrogenase subunit D [Verrucosispora maris AB-18-032]
Length = 441
Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats.
Identities = 187/414 (45%), Positives = 250/414 (60%), Gaps = 22/414 (5%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+D +N GPQHP+ HGVLRL+LEL+GE V +G LH G EK +E + ++Q
Sbjct: 32 VDPINEGRIVVNMGPQHPSTHGVLRLVLELEGETVREARSVVGYLHTGIEKNLEYRNWVQ 91
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTT 118
+ R+DY++P+ E AYALAVEKLLGI E+ R IRVL E+ RI SHL+ V T
Sbjct: 92 GSTFVTRMDYLSPIFNETAYALAVEKLLGITDEVTERANTIRVLMMELNRISSHLVWVAT 151
Query: 119 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
AM++GA+ L+GF ERE ++ +E +G RM+ AY RPGGV QD+P E + I +
Sbjct: 152 TAMELGAINMMLYGFREREYILEIFELITGLRMNHAYVRPGGVAQDVPDEAIVKIRDFLK 211
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
P L + DLL+G I+ +R + + + G +G ++R +G AWDLRK+ PY
Sbjct: 212 LLPKRLKEYEDLLSGQPIWLERTREVAVLDVTGCVALGVTGPVLRSAGLAWDLRKTMPYC 271
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
Y +FD+P GD + RYLVRM EMRES+K+I Q V+RL K GPV +D KI
Sbjct: 272 GYETYEFDVPTHADGDVWGRYLVRMAEMRESLKLIEQAVDRL----KPGPVMVADKKIAW 327
Query: 299 PK----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGV 342
P M +SMESLIHHFKL TEG+ VP G+VY AVE+P+GE GV
Sbjct: 328 PAQLAIGVDGMGNSLEHVAKIMGQSMESLIHHFKLVTEGFRVPPGQVYVAVESPRGELGV 387
Query: 343 YLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +SDGG +PYR R P + +LQA+ + +G +ADV A SLD V G DR
Sbjct: 388 HAVSDGGTRPYRVHYREPSFVNLQALPAMAEGGLIADVIAGGASLDPVMGGCDR 441
>gi|159039972|ref|YP_001539225.1| NADH dehydrogenase subunit D [Salinispora arenicola CNS-205]
gi|218534360|sp|A8M619|NUOD1_SALAI RecName: Full=NADH-quinone oxidoreductase subunit D 1; AltName:
Full=NADH dehydrogenase I subunit D 1; AltName:
Full=NDH-1 subunit D 1
gi|157918807|gb|ABW00235.1| NADH dehydrogenase I, D subunit [Salinispora arenicola CNS-205]
Length = 441
Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats.
Identities = 185/413 (44%), Positives = 248/413 (60%), Gaps = 22/413 (5%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
D +N GPQHP+ HGVLRL+LEL+GE V +G LH G EK +E + ++Q
Sbjct: 33 DPINDERIVVNMGPQHPSTHGVLRLVLELEGETVREARSVVGYLHTGIEKNLEFRNWVQG 92
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ R+DY+AP+ E AYALAVEKLLGIE I R IRVL E+ RI SHL+ V T
Sbjct: 93 STFVTRMDYLAPLFNETAYALAVEKLLGIEEQITERATTIRVLMMELNRISSHLVWVATT 152
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
AM++GA+ L+GF ERE ++ +E +G RM+ AY RPGGV QD+P E + I +
Sbjct: 153 AMELGAINMMLYGFREREYILEIFELITGLRMNHAYVRPGGVAQDVPDEAIAKIRDFLKL 212
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
P L + +L+G I+ +R N+G + G +G ++R +G AWDLRK+ PY
Sbjct: 213 MPKKLEEYEKMLSGQPIWLERTQNVGVLDATGCLALGVTGPVLRSAGLAWDLRKTMPYCG 272
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y +FD+P GD + RYLVR+ E+RES+K++ Q V+RL GPV +D KI P
Sbjct: 273 YETYEFDVPTHTDGDVWGRYLVRLAEIRESLKLVEQAVDRLR----PGPVMVADRKIAWP 328
Query: 300 K----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVY 343
M +SMESLIHHFKL TEG+ VP G+VY A+EAP+GE GV+
Sbjct: 329 AQLAIGVDGMGNSLEHVAKIMGQSMESLIHHFKLVTEGFRVPPGQVYVALEAPRGELGVH 388
Query: 344 LISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +PYR R P + +LQA+ + +G +ADV A SLD V G DR
Sbjct: 389 AVSDGGTRPYRVHYREPSFVNLQALPAMAEGGLIADVIAGGASLDPVMGGCDR 441
>gi|154174206|ref|YP_001407459.1| NADH dehydrogenase subunit D [Campylobacter curvus 525.92]
gi|229891283|sp|A7GW67|NUOD_CAMC5 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|112803219|gb|EAU00563.1| NADH dehydrogenase (quinone), d subunit [Campylobacter curvus
525.92]
Length = 409
Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats.
Identities = 172/394 (43%), Positives = 246/394 (62%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++ +NFGPQHP+AHG L+L+LELDGE V R P +G +HRG EK+ E T+ + +
Sbjct: 18 ERNDGKMILNFGPQHPSAHGQLKLVLELDGEKVVRAMPEVGFMHRGIEKMAENMTYQEFI 77
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DR+DY+A + +A+ AVE+L I++P R Q+IRV+ E+ RI SHLL + T A+D
Sbjct: 78 PVTDRVDYIASVANNYAFCEAVERLCEIKVPRRAQIIRVILLELNRISSHLLFLATHALD 137
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA+T L+ F ERE ++ E+ G+R+ + R GG+ D+P E++ +C+ FP
Sbjct: 138 IGAMTVFLYAFREREYVLDMIEKYCGARLTHSAVRIGGMPLDLPEGWFEEMLKFCEKFPK 197
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ DLL+ NRI+K R N+G + E A G SGVM+R SG WD+RK QPY Y E
Sbjct: 198 DIKIYEDLLSENRIWKMRLENVGVISKELALSSGCSGVMLRASGVKWDIRKEQPYLVYDE 257
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+DF++P GDCY RY++ M EM+E VKI++QC L + + A P+ V P +
Sbjct: 258 IDFEVPYAVAGDCYARYVLYMREMKECVKILKQC--ERLYRASSREILADAPEFVSPSKE 315
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ SL+ HF L T+G GE+Y A E+PKGE G+Y+ S G PYR KIR P +
Sbjct: 316 QIMTQNYSLMQHFVLITQGIKPKRGEIYFASESPKGELGIYINSQGEASPYRLKIRTPSF 375
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+H E L G +AD++AI+GS +I+ GEVDR
Sbjct: 376 SHCAIYEDLLVGQYIADIAAIIGSTNIILGEVDR 409
>gi|256422833|ref|YP_003123486.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Chitinophaga pinensis DSM 2588]
gi|256037741|gb|ACU61285.1| NADH dehydrogenase I, D subunit [Chitinophaga pinensis DSM 2588]
Length = 580
Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats.
Identities = 167/392 (42%), Positives = 234/392 (59%), Gaps = 4/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+N GPQHP HGVLR+IL+LDGE + P IG HRG EK+ E +++ +PY
Sbjct: 193 DVDFMFLNIGPQHPGTHGVLRIILQLDGEEIVDAVPEIGFHHRGAEKMGERQSWHTYIPY 252
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY+ + +Y LAVE+L GI IP R ++IRV+ E+ RI SHL+ T A D+G
Sbjct: 253 TDRIDYLGGVMNNLSYLLAVEQLAGITIPDRAKVIRVMLCELFRINSHLVWFGTFAQDLG 312
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
L+P + F EREK+ E G RMH +FR GGV QD+P + + + FP+ L
Sbjct: 313 QLSPVFYMFTEREKIFDVIEAVCGGRMHPNWFRIGGVAQDLPNGWDTLVRDFVNRFPAKL 372
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ +D++ N + K R IG LE+A WG +G +R G WD RK +PY Y +
Sbjct: 373 KEFNDMVLRNSLIKARTKGIGVYTLEEAIEWGVTGPGLRACGFDWDFRKKRPYSGYELFE 432
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDIPI +HGDCYDR +VR+ EMR+S++II QC+N + G A P PP +
Sbjct: 433 FDIPIAQHGDCYDRSVVRVEEMRQSLRIIEQCLNNM----PSGNYKAEHPLTTPPIKKHT 488
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
+ +E+LI HF + G +P GE + VEA KG YLISDG YR +IR P + H
Sbjct: 489 MQDIETLITHFLNVSWGPVIPPGEAISCVEATKGATSYYLISDGNTSSYRTRIRTPSFPH 548
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+Q + ++ KG+ +AD+ +ILGS+D V ++DR
Sbjct: 549 MQMVPYISKGYTVADLLSILGSVDYVLADIDR 580
>gi|49147198|ref|YP_025791.1| NADH dehydrogenase subunit 7 [Pseudendoclonium akinetum]
gi|33439213|gb|AAQ18750.1| NADH dehydrogenase subunit 7 [Pseudendoclonium akinetum]
Length = 396
Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats.
Identities = 239/391 (61%), Positives = 299/391 (76%), Gaps = 6/391 (1%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+R FT+NFGPQHPAAHGVLRLIL + GE V D HIGLLHRGTEKLIE KT LQA+PYF
Sbjct: 12 TRPFTLNFGPQHPAAHGVLRLILSMRGEQVLSTDTHIGLLHRGTEKLIEYKTVLQALPYF 71
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DRLDYV+ M+ EH+Y LAVE+L +E+P R Q IR+L++EI R+L+HLL VT AMD GA
Sbjct: 72 DRLDYVSVMSMEHSYCLAVERLTEMEVPRRAQFIRMLFAEITRVLNHLLAVTCFAMDTGA 131
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
LTP L+ FEEREKLM FYER SG+RMH+AYFRPGGV D+P L++DI W D F S ++
Sbjct: 132 LTPFLFAFEEREKLMEFYERVSGARMHSAYFRPGGVATDLPAGLLQDIHVWADQFASRID 191
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+I +LLTGNRIFKQR VNIG +K EDA WG SGV++RGSG A+DLRK+Q Y+ Y ++ F
Sbjct: 192 EIEELLTGNRIFKQRLVNIGVLKAEDAIAWGVSGVLLRGSGIAYDLRKAQSYDAYDQVQF 251
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
++P+G + DCYDRYL+R+ EMRES+ II+Q ++ GP+ +D + RA+ K
Sbjct: 252 NVPVGTNSDCYDRYLLRIEEMRESLSIIKQTLD----LVPTGPIKPADGPVA--SRAEFK 305
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
MESLI HFK T G+ VPVGE Y + EAPKGEFGV +S+G N+PYR KI++P YA L
Sbjct: 306 SDMESLIRHFKASTSGFAVPVGETYCSSEAPKGEFGVLFVSNGANRPYRVKIKSPDYASL 365
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
QA++ L KGH +ADV AI+GSLD+VFG +DR
Sbjct: 366 QAIDILGKGHYIADVVAIIGSLDVVFGSIDR 396
>gi|304312242|ref|YP_003811840.1| NADH dehydrogenase I, chain CD [gamma proteobacterium HdN1]
gi|301797975|emb|CBL46197.1| NADH dehydrogenase I, chain CD [gamma proteobacterium HdN1]
Length = 616
Score = 401 bits (1031), Expect = e-110, Method: Composition-based stats.
Identities = 160/392 (40%), Positives = 231/392 (58%), Gaps = 4/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ +N GP HP+ HGV R++L+LDGE + P IG HRG EK+ E +++ +PY
Sbjct: 229 DTDFMFLNLGPNHPSVHGVFRVVLQLDGEEIVEAVPDIGYHHRGAEKMGERQSWHSYIPY 288
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY+ + Y LAVEKL GIE+P R ++IR++ E+ RI SHL+ T + D+G
Sbjct: 289 TDRIDYLGGVMNNLPYVLAVEKLAGIEVPERVKVIRIMLVELFRIASHLVFYGTFSQDIG 348
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
++P + F +REK+ E SG RMH ++FR GGV D+P + + D P L
Sbjct: 349 QMSPVFYMFVDREKVFHIIEAISGGRMHPSWFRIGGVAHDLPKGWDRMVREFLDYMPPRL 408
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
++ N I +QR IG++ E+A WG SG M+R +G WD+RK QPY Y + +
Sbjct: 409 QHYDKMVMRNSIIRQRTRGIGSISTEEALEWGASGAMLRATGLNWDVRKKQPYSGYDQFE 468
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FD+P+G +GDCYDR VR+ EMR+S++II QC+ + GP A PP +
Sbjct: 469 FDVPLGVNGDCYDRCSVRVEEMRQSLRIISQCLENM----PEGPYKAKHKLTTPPPKERT 524
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
+E+LI HF + G +P GEV +EA KG YL+SDG YR +IR P +AH
Sbjct: 525 MLDIETLIQHFTTVSWGPVIPAGEVCIPIEATKGMNSYYLVSDGNTMAYRTRIRTPSFAH 584
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
LQ + + +G +AD+ AI+ S+D V +VDR
Sbjct: 585 LQMIPTMSRGLMIADLIAIIASIDFVMADVDR 616
>gi|307328624|ref|ZP_07607797.1| NADH dehydrogenase I, D subunit [Streptomyces violaceusniger Tu
4113]
gi|306885736|gb|EFN16749.1| NADH dehydrogenase I, D subunit [Streptomyces violaceusniger Tu
4113]
Length = 444
Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats.
Identities = 175/407 (42%), Positives = 245/407 (60%), Gaps = 22/407 (5%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
+N GPQHP+ HGVLRLILE+DGE V IG LH G EK +E + + Q + R
Sbjct: 42 RIIVNMGPQHPSTHGVLRLILEIDGETVTEARCGIGYLHTGIEKNLEFRNWTQGTTFVTR 101
Query: 68 LDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
+DY+ P E AY L VEKLLGIE IP R +IRVL E+ R+ SHL+ + T M++GA
Sbjct: 102 MDYLTPFYNEAAYCLGVEKLLGIEDQIPDRATVIRVLLMELNRLSSHLVAIATGGMELGA 161
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
T ++GF +RE ++ +E +G RM+ A+ RPGG+ QD+PP V+ I + L
Sbjct: 162 TTIMIYGFRDRELILDVFELVTGLRMNHAFIRPGGLAQDLPPGAVDQIRALLKTMRKNLP 221
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ L TGN +FK R N+G + L G +G ++R +G DLRK+ PY Y DF
Sbjct: 222 EYDKLATGNPVFKARLQNVGYLDLAGCMALGVTGPILRATGLPHDLRKTDPYCGYETYDF 281
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK----- 300
++P D Y R+L+R+ EMR+S++I+ QC+ RL + GPV +D KI P
Sbjct: 282 EVPTADTCDAYGRFLIRLEEMRQSLRIVEQCLERL----EPGPVMVADKKIAWPAQLALG 337
Query: 301 -----------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGG 349
+ M SME+LIHHFKL TEG+ VP G+ YAA+E+PKGE G +++SDGG
Sbjct: 338 PDGLGNSLDHIKNIMGTSMEALIHHFKLVTEGFRVPPGQTYAAIESPKGELGAHMVSDGG 397
Query: 350 NKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+P+R R P + +LQ++ +C+G Q+ADV + S+D V G VDR
Sbjct: 398 TRPFRVHFRDPSFTNLQSVAAMCEGGQVADVIVAVASIDPVMGGVDR 444
>gi|307332596|ref|ZP_07611642.1| NADH dehydrogenase I, D subunit [Streptomyces violaceusniger Tu
4113]
gi|306881759|gb|EFN12899.1| NADH dehydrogenase I, D subunit [Streptomyces violaceusniger Tu
4113]
Length = 445
Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats.
Identities = 174/413 (42%), Positives = 244/413 (59%), Gaps = 20/413 (4%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+K +N GPQHP+ HGVLRLILE+DGE V+ IG LH G EK +E + ++Q
Sbjct: 35 EKADDERIIVNMGPQHPSTHGVLRLILEIDGETVKEARCGIGYLHTGIEKNMEFRNWVQG 94
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ R+DY+ P+ E AY LAVEKLLGI IP R +IRV+ E+ RI SHL+ V
Sbjct: 95 TTFVTRMDYLMPLFNETAYCLAVEKLLGITDHIPERASVIRVMMMELNRISSHLVAVAAG 154
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
M++G+ T ++GF +RE ++ +E +G RM+ Y RPGG+ QD+PP ++DI
Sbjct: 155 GMEIGSTTLMVYGFRDREVILDIFELVTGLRMNHGYVRPGGLAQDLPPGALDDIREGVRL 214
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
S L + L T N FK R +++G + L G +G ++R +G DLRKSQPY
Sbjct: 215 LRSRLPEYDKLATNNPAFKARLMDVGYLNLAGCMALGATGPILRATGLPHDLRKSQPYCG 274
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y DF++ D Y R+L+R+ EM +S++I+ QC+ +L G G V +D KI P
Sbjct: 275 YEGYDFEVETADTCDSYGRFLIRLHEMEQSLRIVEQCLEQLTGGG--GEVMVADKKIAWP 332
Query: 300 K----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVY 343
R M SME+LI+HFKL TEG+ VP G+ Y AVE+P+GE GV+
Sbjct: 333 AQLSLGADGLGNSLDHIRKIMGESMEALIYHFKLVTEGFRVPPGQTYTAVESPRGELGVH 392
Query: 344 LISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++SDGG +PYR R P + +LQ M +C+G Q+ADV + +D V G VDR
Sbjct: 393 VVSDGGTRPYRVHFRDPSFTNLQTMAAMCEGGQVADVIVAVAGIDPVMGGVDR 445
>gi|78221378|ref|YP_383125.1| trifunctional NADH dehydrogenase I subunit B/C/D [Geobacter
metallireducens GS-15]
gi|123572941|sp|Q39ZC4|NUBCD_GEOMG RecName: Full=NADH-quinone oxidoreductase subunit B/C/D; AltName:
Full=NADH dehydrogenase I subunit B/C/D; AltName:
Full=NDH-1 subunit B/C/D
gi|78192633|gb|ABB30400.1| NADH dehydrogenase subunit D / NADH dehydrogenase subunit C / NADH
dehydrogenase subunit B [Geobacter metallireducens
GS-15]
Length = 791
Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats.
Identities = 168/396 (42%), Positives = 238/396 (60%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
D+ + IN GPQHP HG++R IL+LDGE + +D IG HRG EK+ E + + Q
Sbjct: 400 FDRIDEETLIINLGPQHPGTHGIIRFILKLDGEEIVDMDTDIGYHHRGAEKIGERQHWNQ 459
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY DR+DY+A + AY +VE+L GI +P R IRV+ +E+ RI SHL+ + T A
Sbjct: 460 FIPYTDRIDYLAGVQNNLAYVNSVERLCGITVPDRAITIRVMLAELFRIASHLVWLGTFA 519
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
DVGA+TP + F +REK+ E +G RMH ++FR GGV +D+P + + D
Sbjct: 520 ADVGAMTPVFYTFTDREKIFDIIEMVTGGRMHPSWFRIGGVTEDLPEGWDGAVKEFLDWM 579
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P L + DLL N IFK R +G + ++A WG +G +R G AWDLRK PY Y
Sbjct: 580 PGRLKEYEDLLKENPIFKARLKGVGVITKDEAMEWGITGPNLRACGMAWDLRKKIPYNGY 639
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
F+IP + GDC+ RY +R+ E+R+S+ I+ QC + G D + V PK
Sbjct: 640 QHFHFEIPTEEGGDCWARYRIRVEEIRQSLHIVAQCRKEMPA----GRWITDDYRYVLPK 695
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ D +ESLIHHF T G P GE Y+A+EAPKGE G +++SDG N PYR +I+ P
Sbjct: 696 KRDTLHDIESLIHHFINATRGMAPPRGENYSAIEAPKGENGYFVVSDGLNVPYRVRIKTP 755
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ H+QA+ + +G +AD AI+GS+D V ++DR
Sbjct: 756 SFPHIQALPLMSRGWLVADFLAIIGSIDFVLADLDR 791
>gi|326382760|ref|ZP_08204450.1| NADH dehydrogenase subunit D [Gordonia neofelifaecis NRRL B-59395]
gi|326198350|gb|EGD55534.1| NADH dehydrogenase subunit D [Gordonia neofelifaecis NRRL B-59395]
Length = 436
Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats.
Identities = 182/410 (44%), Positives = 244/410 (59%), Gaps = 22/410 (5%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+N GPQHP+ HGVLRLILE+DGE V IG LH G EK +E +T+ Q V +
Sbjct: 31 DDERIIVNMGPQHPSTHGVLRLILEIDGETVTEARCGIGYLHTGIEKNLEFRTWTQGVAF 90
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
R+DY+AP E AY LAVEKLLGI EIP R +IRVL E+ RI SHL+ + T M+
Sbjct: 91 VTRMDYLAPFFNEVAYCLAVEKLLGITDEIPARASVIRVLLMELNRIASHLVALATGGME 150
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA+TP GF REK++ +E +G RM+ A+ RPGG+ QD+P I D+ P
Sbjct: 151 LGAVTPMFLGFGAREKILDLFEDITGLRMNHAFIRPGGISQDLPDGAERKIADVLDALPG 210
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ ++ LLT N I+K R IG + L G +G ++R +G +DLRKS PY Y
Sbjct: 211 QIGEVESLLTENYIWKARTRGIGYLDLTGCMALGVTGPVLRSTGLPYDLRKSDPYCGYEN 270
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK-- 300
DFD+ D Y RYL+R+ EM++S++I RQC+ L + GPV +D K+ P
Sbjct: 271 YDFDVVTDTGCDAYGRYLIRVEEMKQSIRIARQCLAAL----EPGPVMVADRKLAWPADL 326
Query: 301 --------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLIS 346
M SMESLIHHFKL TEG VP G+ Y A+E+P+GE GV+++S
Sbjct: 327 AVGPDGMGNSPEHIAEIMGMSMESLIHHFKLVTEGMRVPAGQCYVAIESPRGELGVHMVS 386
Query: 347 DGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
DGG +PYR R P + +LQA+ +C+G +ADV + S+D V G VDR
Sbjct: 387 DGGTRPYRVHFRDPSFTNLQAVAAMCEGGLVADVITAVASIDPVMGGVDR 436
>gi|315501189|ref|YP_004080076.1| NADH dehydrogenase i, d subunit [Micromonospora sp. L5]
gi|315407808|gb|ADU05925.1| NADH dehydrogenase I, D subunit [Micromonospora sp. L5]
Length = 441
Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats.
Identities = 179/413 (43%), Positives = 249/413 (60%), Gaps = 22/413 (5%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
D +N GPQHP+ HGVLRL+LEL+GE V IG LH G EK +E + ++Q
Sbjct: 33 DPINDERIVVNMGPQHPSTHGVLRLVLELEGETVREARSVIGYLHTGIEKNLEYRNWVQG 92
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ R+DY++P+ E AYALAVEKLLGI ++ R IRVL E+ R+ SHL+ + T
Sbjct: 93 STFVTRMDYLSPLFNETAYALAVEKLLGITDDVTERATTIRVLMMELNRVSSHLVWLATT 152
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
AM++GA+ L+GF ERE ++ +E +G RM+ AY RPGGV QD+P + + I +
Sbjct: 153 AMELGAINMMLYGFREREYVLDIFETITGLRMNHAYVRPGGVAQDVPDDAIRKIRDFLQL 212
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
P L + +LL+G I+ +R ++ + + G +G ++R +G AWDLRK+ PY
Sbjct: 213 MPKRLKEYENLLSGQPIWLERTQHVAVLDVTACMALGVTGPVLRSAGLAWDLRKTMPYCG 272
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y +FD+P GD + RYLVR+ E+RES+K+I Q ++RL K GPV SD KI P
Sbjct: 273 YETYEFDVPTHTDGDVWGRYLVRVAEIRESLKLIEQALDRL----KPGPVMVSDKKIAWP 328
Query: 300 K----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVY 343
M +SMESLIHHFKL TEG+ VP G+VY +E+P+GE GV+
Sbjct: 329 AQLAIGVDGMGNSLEHVAKIMGQSMESLIHHFKLVTEGFRVPPGQVYVGIESPRGELGVH 388
Query: 344 LISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +PYR R P + +LQA+ + +G +ADV A SLD V G DR
Sbjct: 389 AVSDGGTRPYRVHYREPSFVNLQALPAMAEGGLIADVIAGGASLDPVMGGCDR 441
>gi|297563970|ref|YP_003682943.1| NADH dehydrogenase I, D subunit [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296848419|gb|ADH70437.1| NADH dehydrogenase I, D subunit [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 431
Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats.
Identities = 178/408 (43%), Positives = 238/408 (58%), Gaps = 22/408 (5%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GPQHP+ HGVLRLIL LDGE IG LH G EK +E +T+ Q +
Sbjct: 28 ERLVVNMGPQHPSTHGVLRLILTLDGETCTEARVGIGYLHTGIEKNMEYRTWTQGTTFVT 87
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
R+DY+ P+ E AY LAVEKLLGIE +P R +IRV+ E+ R+ SH + + T M++G
Sbjct: 88 RMDYLTPLFNEAAYCLAVEKLLGIEDRVPERASVIRVMMMELNRMASHFVAMATFGMELG 147
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A T GF ERE ++ +E +G RM+ AY RPGGV QD+PP + P +
Sbjct: 148 ATTVMTNGFREREMILDIFELVTGLRMNHAYIRPGGVAQDLPPGAAGKVRELLKEMPKRI 207
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ LL N ++ R ++ + L G +G ++R SG AWDLRK++PY Y +
Sbjct: 208 AVMRKLLDENPVYLARTKDVAHLNLPGCMALGVTGPLLRASGLAWDLRKAKPYCGYEGYE 267
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR--- 301
FD+P+ GD Y RY VRM EM ES+KII QC+++L + GPV D KI P +
Sbjct: 268 FDVPVSDGGDVYARYRVRMAEMEESLKIIEQCLDKL----QPGPVMIQDAKIGWPAKLAL 323
Query: 302 -------------ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG 348
M SME+LIHHFKL TEG+ VP G+ YAAVE+ KGE G Y +SDG
Sbjct: 324 GPDGLGNSPDHIAHIMSGSMEALIHHFKLVTEGFRVPAGQAYAAVESAKGELGCYAVSDG 383
Query: 349 GNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+P+R R P + HLQA+ +C+G +ADV A + S+D V G VDR
Sbjct: 384 STRPHRVHFRDPSFTHLQAVAAMCEGGTVADVIAAVASIDPVMGGVDR 431
>gi|206890240|ref|YP_002248750.1| NADH dehydrogenase i, d subunit [Thermodesulfovibrio yellowstonii
DSM 11347]
gi|229891262|sp|B5YKI5|NUOD1_THEYD RecName: Full=NADH-quinone oxidoreductase subunit D 1; AltName:
Full=NADH dehydrogenase I subunit D 1; AltName:
Full=NDH-1 subunit D 1
gi|206742178|gb|ACI21235.1| NADH dehydrogenase i, d subunit [Thermodesulfovibrio yellowstonii
DSM 11347]
Length = 397
Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats.
Identities = 164/393 (41%), Positives = 249/393 (63%), Gaps = 1/393 (0%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K + T+N GPQHPA HGVLRL+LEL+GE++++ P+IG LHRG EKL E T++Q++P
Sbjct: 6 KTVKELTVNMGPQHPATHGVLRLVLELEGEVIKKCIPYIGYLHRGVEKLSEDLTYVQSLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+DY++ M + +AVEKL+GI+IP R + IR + E+ RI SHL+ + T A+D+
Sbjct: 66 ITDRMDYLSSMVNNVGFCVAVEKLMGIQIPERAKFIRTIMGEMARICSHLVWIATHALDI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+T L+ +RE L+ +E +G+R+ +Y R GGV D+ E ++ + + FP
Sbjct: 126 GAMTVFLYAMRDREYLLELFEMVTGARLTVSYPRVGGVRCDVNNEFLDKTYKFIEEFPRK 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+ NR++ +R +G + E+A WG +G +RGSG +D+RK PY+ Y ++
Sbjct: 186 VEEYETLIDRNRVWLKRTKGVGVISAEEAINWGLTGPTLRGSGVYYDVRKFFPYDAYDKV 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DF++P+GK+GD YDRY RM+E R+S KII+QC+ RL + + + P + D
Sbjct: 246 DFEVPLGKNGDIYDRYKCRMLEFRQSAKIIKQCIERLPDGSILAENALRIRMPESPLKID 305
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
K + + K E + EVYA+VEAP+GE G Y++ D +KPYR ++RAP +
Sbjct: 306 KKDIIFDVYIEDKQIQE-FIQKFTEVYASVEAPRGELGFYIVCDNSSKPYRMRVRAPSFV 364
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H + LC+G +ADV A +GS+DIV GE DR
Sbjct: 365 HAGVLPKLCEGSLVADVIANIGSIDIVLGECDR 397
>gi|302864904|ref|YP_003833541.1| NADH dehydrogenase I subunit D [Micromonospora aurantiaca ATCC
27029]
gi|302567763|gb|ADL43965.1| NADH dehydrogenase I, D subunit [Micromonospora aurantiaca ATCC
27029]
Length = 441
Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats.
Identities = 180/413 (43%), Positives = 249/413 (60%), Gaps = 22/413 (5%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
D +N GPQHP+ HGVLRL+LEL+GE V IG LH G EK +E + ++Q
Sbjct: 33 DPINDERIVVNMGPQHPSTHGVLRLVLELEGETVREARSVIGYLHTGIEKNLEYRNWVQG 92
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ R+DY++P+ E AYALAVEKLLGI +I R IRVL E+ R+ SHL+ + T
Sbjct: 93 STFVTRMDYLSPLFNETAYALAVEKLLGITDDITERATTIRVLMMELNRVSSHLVWLATT 152
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
AM++GA+ L+GF ERE ++ +E +G RM+ AY RPGGV QD+P + + I +
Sbjct: 153 AMELGAINMMLYGFREREYVLDIFETITGLRMNHAYVRPGGVAQDVPDDAIRKIRDFLQL 212
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
P L + +LL+G I+ +R ++ + + G +G ++R +G AWDLRK+ PY
Sbjct: 213 MPKRLKEYENLLSGQPIWLERTQHVAVLDVTACMALGVTGPVLRSAGLAWDLRKTMPYCG 272
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y +FD+P GD + RYLVR+ E+RES+K+I Q ++RL K GPV SD KI P
Sbjct: 273 YETYEFDVPTHTDGDVWGRYLVRVAEIRESLKLIEQALDRL----KPGPVMVSDKKIAWP 328
Query: 300 K----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVY 343
M +SMESLIHHFKL TEG+ VP G+VY +E+P+GE GV+
Sbjct: 329 AQLAIGVDGMGNSLEHVAKIMGQSMESLIHHFKLVTEGFRVPPGQVYVGIESPRGELGVH 388
Query: 344 LISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +PYR R P + +LQA+ + +G +ADV A SLD V G DR
Sbjct: 389 AVSDGGTRPYRVHYREPSFVNLQALPAMAEGGLIADVIAGGASLDPVMGGCDR 441
>gi|145596573|ref|YP_001160870.1| NADH dehydrogenase subunit D [Salinispora tropica CNB-440]
gi|218534361|sp|A4XC35|NUOD1_SALTO RecName: Full=NADH-quinone oxidoreductase subunit D 1; AltName:
Full=NADH dehydrogenase I subunit D 1; AltName:
Full=NDH-1 subunit D 1
gi|145305910|gb|ABP56492.1| NADH dehydrogenase I, D subunit [Salinispora tropica CNB-440]
Length = 441
Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats.
Identities = 184/413 (44%), Positives = 249/413 (60%), Gaps = 22/413 (5%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
D +N GPQHP+ HGVLRL+LEL+GE V + +G LH G EK +E + ++Q
Sbjct: 33 DPINDERIVVNMGPQHPSTHGVLRLVLELEGETVRELRSVVGYLHTGIEKNMEFRNWVQG 92
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ R+DY+AP+ E AYALAVEKLLGIE I R IRVL E+ RI SHL+ V T
Sbjct: 93 AAFVTRMDYLAPLFNETAYALAVEKLLGIEEQITERATTIRVLMMELNRISSHLVWVATT 152
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
AM++GA+ L+GF ERE ++ +E +G RM+ AY RPGGV QD+P E + I + +
Sbjct: 153 AMELGAINMMLYGFREREYVLEIFELITGLRMNHAYVRPGGVAQDVPDEAIAKIRDFLEL 212
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
P L + +L+G I+ +R N+G + G +G ++R +G AWDLRK+ PY
Sbjct: 213 MPKKLAEYEKMLSGQPIWLERTQNVGVLDATGCLAMGVTGPVLRSAGLAWDLRKTMPYCG 272
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y +FD+P GD + RYLVR+ E+RES+K++ Q V+RL GPV +D KI P
Sbjct: 273 YETYEFDVPTHTDGDVWGRYLVRLAEIRESLKLVEQAVDRLR----PGPVMVADRKIAWP 328
Query: 300 K----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVY 343
M +SMESLIHHFKL TEG+ VP G+VY +EAP+GE GV+
Sbjct: 329 AQLAIGVDGMGNSLEHVAKIMGQSMESLIHHFKLVTEGFRVPPGQVYVGIEAPRGELGVH 388
Query: 344 LISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +PYR R P + +LQA+ + +G +ADV A SLD V G DR
Sbjct: 389 AVSDGGTRPYRVHYREPSFVNLQALPAMAEGGLIADVIAGGASLDPVMGGCDR 441
>gi|215413015|ref|ZP_03421716.1| NADH dehydrogenase subunit D [Mycobacterium tuberculosis 94_M4241A]
gi|298526622|ref|ZP_07014031.1| NADH-quinone oxidoreductase subunit D [Mycobacterium tuberculosis
94_M4241A]
gi|298496416|gb|EFI31710.1| NADH-quinone oxidoreductase subunit D [Mycobacterium tuberculosis
94_M4241A]
Length = 440
Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats.
Identities = 176/409 (43%), Positives = 243/409 (59%), Gaps = 22/409 (5%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+N GPQHP+ HGVLRLILE++GE V IG LH G EK +E + + Q V +
Sbjct: 36 GERIVVNMGPQHPSTHGVLRLILEIEGETVVDARCGIGYLHTGIEKNLEYRYWTQGVTFV 95
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
R+DY++P E AY L VEKLLGI EIP R +IRVL E+ RI SHL+ + T M++
Sbjct: 96 TRMDYLSPFFNETAYCLGVEKLLGITDEIPERVNVIRVLMMELNRISSHLVALATGGMEL 155
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+TP GF RE ++ +E+ +G RM++AY RPGGV QD+PP +I
Sbjct: 156 GAMTPMFVGFRAREIVLTLFEKITGLRMNSAYIRPGGVAQDLPPNAATEIAEALKQLRQP 215
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L ++ +LL N I+K R +G + L G +G ++R +G DLRKS+PY Y
Sbjct: 216 LREMGELLNENAIWKARTQGVGYLDLTGCMALGITGPILRSTGLPHDLRKSEPYCGYQHY 275
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK--- 300
+FD+ D Y RY++R+ EM ES+KI+ QC+++L GP SD K+ P
Sbjct: 276 EFDVITDDSCDAYGRYMIRVKEMWESMKIVEQCLDKLR----PGPTMISDRKLAWPADLQ 331
Query: 301 -------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISD 347
M SME+LIHHFKL TEG VP G+VY AVE+P+GE GV+++SD
Sbjct: 332 VGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRVPAGQVYVAVESPRGELGVHMVSD 391
Query: 348 GGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GG +PYR R P + +LQ++ +C+G +AD+ A + S+D V G VDR
Sbjct: 392 GGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAVASIDPVMGGVDR 440
>gi|238062214|ref|ZP_04606923.1| NADH-quinone oxidoreductase, D1 subunit [Micromonospora sp. ATCC
39149]
gi|237884025|gb|EEP72853.1| NADH-quinone oxidoreductase, D1 subunit [Micromonospora sp. ATCC
39149]
Length = 441
Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats.
Identities = 176/413 (42%), Positives = 245/413 (59%), Gaps = 22/413 (5%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
D +N GPQHP+ HGVLRLILEL+GE V +G LH G EK +E + ++Q
Sbjct: 33 DPINDERIVVNMGPQHPSTHGVLRLILELEGETVREARSVVGYLHTGIEKNLEYRNWVQG 92
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ R+DY++P+ E AY+LAVEKLLGI +I R IRVL E+ RI SHL+ + T
Sbjct: 93 STFVTRMDYLSPLFNETAYSLAVEKLLGITDDITERATTIRVLMMELNRISSHLVWLATT 152
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
M++GA++ L+GF ERE ++ +E +G RM+ AY RPGGV QD+P + + I +
Sbjct: 153 GMELGAISIMLYGFREREYILDIFETITGLRMNHAYIRPGGVAQDVPDDAIVKIREFLKM 212
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
P L + DLL+G I+ +R ++ + + G +G ++R +G WDLRK+ PY
Sbjct: 213 MPKKLKEYEDLLSGQPIWVERTKHVAVLDVTGCLALGITGPVLRSAGLPWDLRKTMPYCG 272
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y FD+P GD + RY VR+ E+RES+KI+ Q ++RL GPV +D KI P
Sbjct: 273 YETYSFDVPTHPDGDVWGRYQVRLAEIRESLKIVEQALDRLR----PGPVMVADRKIAWP 328
Query: 300 K----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVY 343
M +SMESLIHHFKL TEG+ VP G+VY +E+P+GE GV+
Sbjct: 329 AQLAIGVDGMGNSLEHVAKIMGQSMESLIHHFKLVTEGFRVPPGQVYVGIESPRGELGVH 388
Query: 344 LISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +PYR R P + +LQA+ + +G +ADV A SLD V G DR
Sbjct: 389 AVSDGGTRPYRVHYREPSFVNLQALPAMAEGGLIADVIAGGASLDPVMGGCDR 441
>gi|22711917|ref|NP_683858.1| NADH dehydrogenase subunit 7 [Chaetosphaeridium globosum]
gi|28201834|sp|Q8M9T5|NDHH_CHAGL RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|22416921|gb|AAM96521.1| 49 kDa subunit of NADH-plastoquinone [Chaetosphaeridium globosum]
Length = 391
Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats.
Identities = 177/396 (44%), Positives = 232/396 (58%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M KK+ ++ GP HP+ HGVLRL++ LDGE V DP +G LHRG EK+ E ++ +Q
Sbjct: 1 MLTKKTDPMIVSMGPHHPSMHGVLRLVVSLDGENVIDCDPVLGYLHRGMEKIAENRSIVQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E A EKL I++P R IRV+ E+ RI SHLL +
Sbjct: 61 YLPYVTRWDYLATMFTEAITVNAPEKLANIQVPKRASYIRVIMLELSRIASHLLWLGPFM 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 121 ADIGAQTPFFYIFREREMVYDLFESATGMRMMHNYFRIGGVAVDLPYGWLDKCLDFCDYF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ + +L+T N IF++R IG + EDA WG SG M+RGSG WDLRK YECY
Sbjct: 181 LPKIAEYENLITNNPIFRKRVEGIGIISREDAINWGLSGAMLRGSGVQWDLRKVDHYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
ELD+ I GDC RYLVRM EMRES+KII+Q + + G GP + + +
Sbjct: 241 DELDWSIQWQSDGDCLARYLVRMGEMRESIKIIQQALKAIPG----GPYENLEARRLNEG 296
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
E K + + +P E Y VEAPKGE G+YLI D P+RCKIR P
Sbjct: 297 PKSEWNDFE-YQFISKKSSPTFKLPKNEHYVRVEAPKGELGIYLIGDDTVFPWRCKIRPP 355
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L KG +LAD+ ILGS+DI+ GEVDR
Sbjct: 356 GFVNLQILPQLVKGMKLADIMTILGSIDIIMGEVDR 391
>gi|256396789|ref|YP_003118353.1| NADH dehydrogenase subunit D [Catenulispora acidiphila DSM 44928]
gi|256363015|gb|ACU76512.1| NADH dehydrogenase I, D subunit [Catenulispora acidiphila DSM
44928]
Length = 445
Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats.
Identities = 184/414 (44%), Positives = 240/414 (57%), Gaps = 19/414 (4%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + +N GPQHP+ HGVLRLILE+DGE V IG LH G EK E + ++Q
Sbjct: 33 LQESPEERIVVNMGPQHPSTHGVLRLILEIDGETVTEARCGIGYLHTGIEKNTEYRNWVQ 92
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTT 118
+ R+DY+ P+ E AY LAVEKLL IE IP R +IRVL E+ RI SHL+ + T
Sbjct: 93 GTTFVTRMDYLTPLFNEAAYCLAVEKLLDIEEQIPERASVIRVLMMELNRISSHLVCLAT 152
Query: 119 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
M++GALT GF ERE+ + +E +G RM+ AY RPGGV QD+PP V+ IG +
Sbjct: 153 GGMEMGALTMMTAGFREREETLDLFEFITGLRMNHAYIRPGGVAQDLPPGAVDKIGNYIK 212
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
D + L N IF+ R +G + L G +G ++R +G DLRKS+PY
Sbjct: 213 LMRKRFPDYAKLCNENPIFRGRTEGVGHLDLAGCMALGITGPVLRSTGHPHDLRKSEPYC 272
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
Y DF++ D Y RY VR+ EM ES++I+ QC++R+ PV D KI
Sbjct: 273 GYETYDFEVATWDTSDAYGRYRVRLTEMYESLRIVEQCLDRIQRTQGH-PVMVEDKKIAW 331
Query: 299 PK----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGV 342
P R M SME+LIHHFKL TEG+HVP G+ YAAVE+ KGE GV
Sbjct: 332 PAQLALGSDGMGNSLDHIRHIMGGSMEALIHHFKLVTEGFHVPAGQAYAAVESAKGELGV 391
Query: 343 YLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +SDGG +PYR R P + +LQA +C+G QLADV + SLD V G VDR
Sbjct: 392 HAVSDGGTRPYRVHFRDPSFTNLQATAAMCEGGQLADVIVAVASLDPVMGGVDR 445
>gi|91065094|gb|ABE03926.1| NuoD [Theonella swinhoei bacterial symbiont clone pSW1H8]
Length = 384
Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats.
Identities = 163/387 (42%), Positives = 242/387 (62%), Gaps = 4/387 (1%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
IN GPQHP+ HGVLRL+++L+GE + R+ P IG LH G EK +E +T+ Q V Y +R+
Sbjct: 1 MRINVGPQHPSTHGVLRLVVDLEGERIVRILPQIGYLHTGFEKTMENRTYQQVVTYSNRM 60
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
DY+ + AY LAVE+LLG +P R Q +RV+ +E+ RI SHL+ + T +D+GALT
Sbjct: 61 DYLHGFGHDLAYVLAVEELLGARVPERAQRVRVILTELNRIASHLIFLGTGVLDMGALTL 120
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
+ ERE+L+ +E SG RM+ YFR GG+ QD+P +G + FP + +
Sbjct: 121 FFYTMRERERLLDIFESVSGVRMNYGYFRVGGLAQDLPEGFEGAVGSFLHDFPRMTDQYA 180
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
+ N IF R +G + + A + +G +R SG A D RK+QPY Y DF++P
Sbjct: 181 AMFAQNDIFVSRTRGVGRIPPDRALDYALTGPSLRASGVALDFRKAQPYSGYEHYDFEVP 240
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
+ GD Y R+++R +EM +S++I+ Q + G + GP++ D +I P R++++ SM
Sbjct: 241 TSEEGDAYARFMIRFLEMEQSLRIVEQAL----GGLEPGPINDPDRRISLPPRSELESSM 296
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
E++I HFKL TEG+H P GEVY A E+ +GE G YL+SDGG+ PYR K+R P +LQ++
Sbjct: 297 EAVIFHFKLVTEGFHPPRGEVYVATESARGELGYYLVSDGGSMPYRVKVRVPSLINLQSL 356
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVD 395
E C G AD+ + ++D V G+VD
Sbjct: 357 EPACIGGLFADMVVNIATIDPVMGDVD 383
>gi|15610284|ref|NP_217664.1| NADH dehydrogenase subunit D [Mycobacterium tuberculosis H37Rv]
gi|31794324|ref|NP_856817.1| NADH dehydrogenase subunit D [Mycobacterium bovis AF2122/97]
gi|121639031|ref|YP_979255.1| NADH dehydrogenase subunit D [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148663003|ref|YP_001284526.1| NADH dehydrogenase subunit D [Mycobacterium tuberculosis H37Ra]
gi|148824342|ref|YP_001289096.1| NADH dehydrogenase subunit D [Mycobacterium tuberculosis F11]
gi|161350057|ref|NP_337761.2| NADH dehydrogenase subunit D [Mycobacterium tuberculosis CDC1551]
gi|167970180|ref|ZP_02552457.1| NADH dehydrogenase subunit D [Mycobacterium tuberculosis H37Ra]
gi|215405146|ref|ZP_03417327.1| NADH dehydrogenase subunit D [Mycobacterium tuberculosis 02_1987]
gi|215432107|ref|ZP_03430026.1| NADH dehydrogenase subunit D [Mycobacterium tuberculosis EAS054]
gi|215447438|ref|ZP_03434190.1| NADH dehydrogenase subunit D [Mycobacterium tuberculosis T85]
gi|219559194|ref|ZP_03538270.1| NADH dehydrogenase subunit D [Mycobacterium tuberculosis T17]
gi|224991523|ref|YP_002646212.1| NADH dehydrogenase subunit D [Mycobacterium bovis BCG str. Tokyo
172]
gi|253800182|ref|YP_003033183.1| NADH dehydrogenase subunit I D nuoD [Mycobacterium tuberculosis KZN
1435]
gi|254233767|ref|ZP_04927092.1| NADH dehydrogenase I (chain D) nuoD (NADH-ubiquinone oxidoreductase
chain D) [Mycobacterium tuberculosis C]
gi|254365773|ref|ZP_04981818.1| NADH dehydrogenase I (chain D) nuoD (NADH-ubiquinone oxidoreductase
chain D) [Mycobacterium tuberculosis str. Haarlem]
gi|260188189|ref|ZP_05765663.1| NADH dehydrogenase subunit D [Mycobacterium tuberculosis CPHL_A]
gi|260202294|ref|ZP_05769785.1| NADH dehydrogenase subunit D [Mycobacterium tuberculosis T46]
gi|260206487|ref|ZP_05773978.1| NADH dehydrogenase subunit D [Mycobacterium tuberculosis K85]
gi|289444712|ref|ZP_06434456.1| NADH dehydrogenase (quinone), D subunit [Mycobacterium tuberculosis
T46]
gi|289448828|ref|ZP_06438572.1| NADH dehydrogenase subunit I D nuoD [Mycobacterium tuberculosis
CPHL_A]
gi|289555421|ref|ZP_06444631.1| NADH dehydrogenase subunit I D nuoD [Mycobacterium tuberculosis KZN
605]
gi|289571359|ref|ZP_06451586.1| NADH dehydrogenase subunit I D nuoD [Mycobacterium tuberculosis
T17]
gi|289575860|ref|ZP_06456087.1| NADH dehydrogenase subunit I D nuoD [Mycobacterium tuberculosis
K85]
gi|289746957|ref|ZP_06506335.1| NADH-quinone oxidoreductase subunit D [Mycobacterium tuberculosis
02_1987]
gi|289755267|ref|ZP_06514645.1| NADH dehydrogenase subunit delta [Mycobacterium tuberculosis
EAS054]
gi|289759278|ref|ZP_06518656.1| NADH dehydrogenase subunit D [Mycobacterium tuberculosis T85]
gi|294993127|ref|ZP_06798818.1| NADH dehydrogenase subunit D [Mycobacterium tuberculosis 210]
gi|297635791|ref|ZP_06953571.1| NADH dehydrogenase subunit D [Mycobacterium tuberculosis KZN 4207]
gi|297732788|ref|ZP_06961906.1| NADH dehydrogenase subunit D [Mycobacterium tuberculosis KZN R506]
gi|306777465|ref|ZP_07415802.1| NADH dehydrogenase subunit I D nuoD [Mycobacterium tuberculosis
SUMu001]
gi|306782191|ref|ZP_07420528.1| NADH dehydrogenase subunit I D nuoD [Mycobacterium tuberculosis
SUMu002]
gi|306786011|ref|ZP_07424333.1| NADH dehydrogenase subunit I D nuoD [Mycobacterium tuberculosis
SUMu003]
gi|306790376|ref|ZP_07428698.1| NADH dehydrogenase subunit I D nuoD [Mycobacterium tuberculosis
SUMu004]
gi|306794902|ref|ZP_07433204.1| NADH dehydrogenase subunit I D nuoD [Mycobacterium tuberculosis
SUMu005]
gi|306799101|ref|ZP_07437403.1| NADH dehydrogenase subunit I D nuoD [Mycobacterium tuberculosis
SUMu006]
gi|306804945|ref|ZP_07441613.1| NADH dehydrogenase subunit I D nuoD [Mycobacterium tuberculosis
SUMu008]
gi|306969236|ref|ZP_07481897.1| NADH dehydrogenase subunit I D nuoD [Mycobacterium tuberculosis
SUMu009]
gi|306973583|ref|ZP_07486244.1| NADH dehydrogenase subunit I D nuoD [Mycobacterium tuberculosis
SUMu010]
gi|307081292|ref|ZP_07490462.1| NADH dehydrogenase subunit I D nuoD [Mycobacterium tuberculosis
SUMu011]
gi|307085894|ref|ZP_07495007.1| NADH dehydrogenase subunit I D nuoD [Mycobacterium tuberculosis
SUMu012]
gi|313660121|ref|ZP_07817001.1| NADH dehydrogenase subunit D [Mycobacterium tuberculosis KZN V2475]
gi|54037919|sp|P65570|NUOD_MYCBO RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|54041670|sp|P65569|NUOD_MYCTU RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|218534422|sp|A1KNE4|NUOD_MYCBP RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|218534428|sp|A5U7G4|NUOD_MYCTA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|1781220|emb|CAB06291.1| PROBABLE NADH DEHYDROGENASE I (CHAIN D) NUOD (NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN D) [Mycobacterium tuberculosis
H37Rv]
gi|31619920|emb|CAD95264.1| PROBABLE NADH DEHYDROGENASE I (CHAIN D) NUOD (NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN D) [Mycobacterium bovis AF2122/97]
gi|121494679|emb|CAL73160.1| Probable NADH dehydrogenase I (chain D) nuoD [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|124599296|gb|EAY58400.1| NADH dehydrogenase I (chain D) nuoD (NADH-ubiquinone oxidoreductase
chain D) [Mycobacterium tuberculosis C]
gi|134151286|gb|EBA43331.1| NADH dehydrogenase I (chain D) nuoD (NADH-ubiquinone oxidoreductase
chain D) [Mycobacterium tuberculosis str. Haarlem]
gi|148507155|gb|ABQ74964.1| NADH dehydrogenase subunit delta [Mycobacterium tuberculosis H37Ra]
gi|148722869|gb|ABR07494.1| NADH dehydrogenase I chain D nuoD (NADH-ubiquinone oxidoreductase
chain D) [Mycobacterium tuberculosis F11]
gi|224774638|dbj|BAH27444.1| NADH dehydrogenase subunit D [Mycobacterium bovis BCG str. Tokyo
172]
gi|253321685|gb|ACT26288.1| NADH dehydrogenase subunit I D nuoD [Mycobacterium tuberculosis KZN
1435]
gi|289417631|gb|EFD14871.1| NADH dehydrogenase (quinone), D subunit [Mycobacterium tuberculosis
T46]
gi|289421786|gb|EFD18987.1| NADH dehydrogenase subunit I D nuoD [Mycobacterium tuberculosis
CPHL_A]
gi|289440053|gb|EFD22546.1| NADH dehydrogenase subunit I D nuoD [Mycobacterium tuberculosis KZN
605]
gi|289540291|gb|EFD44869.1| NADH dehydrogenase subunit I D nuoD [Mycobacterium tuberculosis
K85]
gi|289545113|gb|EFD48761.1| NADH dehydrogenase subunit I D nuoD [Mycobacterium tuberculosis
T17]
gi|289687485|gb|EFD54973.1| NADH-quinone oxidoreductase subunit D [Mycobacterium tuberculosis
02_1987]
gi|289695854|gb|EFD63283.1| NADH dehydrogenase subunit delta [Mycobacterium tuberculosis
EAS054]
gi|289714842|gb|EFD78854.1| NADH dehydrogenase subunit D [Mycobacterium tuberculosis T85]
gi|308214177|gb|EFO73576.1| NADH dehydrogenase subunit I D nuoD [Mycobacterium tuberculosis
SUMu001]
gi|308324952|gb|EFP13803.1| NADH dehydrogenase subunit I D nuoD [Mycobacterium tuberculosis
SUMu002]
gi|308329368|gb|EFP18219.1| NADH dehydrogenase subunit I D nuoD [Mycobacterium tuberculosis
SUMu003]
gi|308333197|gb|EFP22048.1| NADH dehydrogenase subunit I D nuoD [Mycobacterium tuberculosis
SUMu004]
gi|308336688|gb|EFP25539.1| NADH dehydrogenase subunit I D nuoD [Mycobacterium tuberculosis
SUMu005]
gi|308340528|gb|EFP29379.1| NADH dehydrogenase subunit I D nuoD [Mycobacterium tuberculosis
SUMu006]
gi|308348464|gb|EFP37315.1| NADH dehydrogenase subunit I D nuoD [Mycobacterium tuberculosis
SUMu008]
gi|308353094|gb|EFP41945.1| NADH dehydrogenase subunit I D nuoD [Mycobacterium tuberculosis
SUMu009]
gi|308357067|gb|EFP45918.1| NADH dehydrogenase subunit I D nuoD [Mycobacterium tuberculosis
SUMu010]
gi|308361021|gb|EFP49872.1| NADH dehydrogenase subunit I D nuoD [Mycobacterium tuberculosis
SUMu011]
gi|308364629|gb|EFP53480.1| NADH dehydrogenase subunit I D nuoD [Mycobacterium tuberculosis
SUMu012]
gi|323718236|gb|EGB27416.1| NADH dehydrogenase subunit I D nuoD [Mycobacterium tuberculosis
CDC1551A]
gi|326902628|gb|EGE49561.1| NADH dehydrogenase subunit I D nuoD [Mycobacterium tuberculosis
W-148]
gi|328459919|gb|AEB05342.1| NADH dehydrogenase subunit I D nuoD [Mycobacterium tuberculosis KZN
4207]
Length = 440
Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats.
Identities = 176/409 (43%), Positives = 243/409 (59%), Gaps = 22/409 (5%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+N GPQHP+ HGVLRLILE++GE V IG LH G EK +E + + Q V +
Sbjct: 36 GERIVVNMGPQHPSTHGVLRLILEIEGETVVEARCGIGYLHTGIEKNLEYRYWTQGVTFV 95
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
R+DY++P E AY L VEKLLGI EIP R +IRVL E+ RI SHL+ + T M++
Sbjct: 96 TRMDYLSPFFNETAYCLGVEKLLGITDEIPERVNVIRVLMMELNRISSHLVALATGGMEL 155
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+TP GF RE ++ +E+ +G RM++AY RPGGV QD+PP +I
Sbjct: 156 GAMTPMFVGFRAREIVLTLFEKITGLRMNSAYIRPGGVAQDLPPNAATEIAEALKQLRQP 215
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L ++ +LL N I+K R +G + L G +G ++R +G DLRKS+PY Y
Sbjct: 216 LREMGELLNENAIWKARTQGVGYLDLTGCMALGITGPILRSTGLPHDLRKSEPYCGYQHY 275
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK--- 300
+FD+ D Y RY++R+ EM ES+KI+ QC+++L GP SD K+ P
Sbjct: 276 EFDVITDDSCDAYGRYMIRVKEMWESMKIVEQCLDKLR----PGPTMISDRKLAWPADLQ 331
Query: 301 -------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISD 347
M SME+LIHHFKL TEG VP G+VY AVE+P+GE GV+++SD
Sbjct: 332 VGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRVPAGQVYVAVESPRGELGVHMVSD 391
Query: 348 GGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GG +PYR R P + +LQ++ +C+G +AD+ A + S+D V G VDR
Sbjct: 392 GGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAVASIDPVMGGVDR 440
>gi|300122799|emb|CBK23814.2| unnamed protein product [Blastocystis hominis]
Length = 410
Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats.
Identities = 209/378 (55%), Positives = 295/378 (78%), Gaps = 4/378 (1%)
Query: 19 AAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
A HGVLRLILEL GEIV++ DPHIG LHRGTEKLIE KT+LQA+PYFDRLDY+A + EH
Sbjct: 37 ATHGVLRLILELRGEIVQKADPHIGFLHRGTEKLIENKTYLQALPYFDRLDYIAMLENEH 96
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREK 138
Y LAVEKLL ++P+R Q IRV+++EI RI++HL+ + + A+D+G+ T +W FEEREK
Sbjct: 97 CYVLAVEKLLQCKVPLRAQYIRVIFAEITRIINHLIGLGSHALDIGSTTVIIWLFEEREK 156
Query: 139 LMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFK 198
L+ FYERA+G+RMHA YFRPGGV QDIP L+ D+ +C+ F L+D+ +LLT NRI++
Sbjct: 157 LLEFYERATGARMHANYFRPGGVRQDIPLGLLNDLYIFCNEFNDRLDDMEELLTNNRIWR 216
Query: 199 QRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDR 258
+R V+IG + + A +GV++R +G WDLRK+ PY+ Y ++ FDIP+G +GDC+DR
Sbjct: 217 ERLVDIGVITKQAALDLNLTGVLLRSTGVKWDLRKTFPYDAYDKVQFDIPVGTNGDCFDR 276
Query: 259 YLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLY 318
+++R+ EMR+SV+II QC+N++ GP+ + + KI P + +K+SME+LI HFK++
Sbjct: 277 FIIRIEEMRQSVRIINQCINQISE----GPIKSDNYKISIPSKVQIKQSMEALIDHFKIF 332
Query: 319 TEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLA 378
+EG+ V EVY ++EAPKGEFGVYL+SDG NKPYRC +++ G+ HLQ++++L +GH +A
Sbjct: 333 SEGFKVEPNEVYCSIEAPKGEFGVYLVSDGSNKPYRCHLKSSGFIHLQSLDYLTRGHLIA 392
Query: 379 DVSAILGSLDIVFGEVDR 396
DV+ ++GSLDIVFG++DR
Sbjct: 393 DVTTVIGSLDIVFGDIDR 410
>gi|282891847|ref|ZP_06300327.1| hypothetical protein pah_c198o040 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281498280|gb|EFB40619.1| hypothetical protein pah_c198o040 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 401
Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats.
Identities = 167/391 (42%), Positives = 247/391 (63%), Gaps = 4/391 (1%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+N GPQHP+ HGVLR+ L LDGEIV +P IG LH G EK ET+T+ Q
Sbjct: 15 GDILELNLGPQHPSTHGVLRIKLRLDGEIVVSAEPVIGYLHTGVEKECETRTYHQVFTLI 74
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DRLDY++ +E A+A AVE+L+ +E+P R Q+IR++ E+ RI SHLL V T A+++
Sbjct: 75 DRLDYLSGPAEEQAFAGAVERLMHVEVPERAQIIRLIILELSRIGSHLLWVGTSALELNM 134
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ ++ F EREK++ +E SG+RM +++R GG+ +D+ P E + FP A
Sbjct: 135 SSVYMYCFIEREKILDLFEELSGARMFPSFWRIGGIARDLNPTFEEHARTFLKEFPKAWK 194
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
D+ +LLT N ++ +R + + E + +G +IRGSG +D+RK PY Y DF
Sbjct: 195 DLDNLLTENYVWCERLKGVAVIDEELCKKYMCTGPVIRGSGVPYDIRKVYPYLNYDSYDF 254
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
DIP GD Y RYLVRM EM +S++++ Q +NRL K GPV +D K+ P R ++
Sbjct: 255 DIPTHPEGDSYARYLVRMEEMLQSLRLVEQGLNRL----KPGPVITNDRKVALPPRHELV 310
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
RSME++IH FKL +EG P GE+Y VE+ +GE G YL+SDG ++PYR ++R+P + H+
Sbjct: 311 RSMEAVIHQFKLVSEGIKAPPGELYQCVESARGELGYYLVSDGSHRPYRVRVRSPSFPHI 370
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ ++ + GH L+DV + S+D + G+VDR
Sbjct: 371 EVLQRVLPGHFLSDVVVAIASVDPILGDVDR 401
>gi|120402880|ref|YP_952709.1| NADH dehydrogenase subunit D [Mycobacterium vanbaalenii PYR-1]
gi|218534433|sp|A1T6A3|NUOD_MYCVP RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|119955698|gb|ABM12703.1| NADH dehydrogenase subunit D [Mycobacterium vanbaalenii PYR-1]
Length = 442
Score = 398 bits (1022), Expect = e-109, Method: Composition-based stats.
Identities = 177/412 (42%), Positives = 240/412 (58%), Gaps = 19/412 (4%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GPQHP+ HGVLRLILE++GEI+ IG LH G EK +E + + Q V
Sbjct: 32 EHAGERIVVNMGPQHPSTHGVLRLILEIEGEIIVEARCGIGYLHTGIEKNLEFRNWTQGV 91
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R+DY++P E AY L VEKLLGI IP R +IRV+ E+ RI SHL+ + T
Sbjct: 92 TFVTRMDYLSPFFNETAYCLGVEKLLGITDAIPERASVIRVMMMELNRISSHLVALATGG 151
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
M++GA+T GF ERE ++ +E +G RM+ AY RPGGV D+P E + +
Sbjct: 152 MELGAMTAMFLGFRERELILSVFETITGLRMNNAYIRPGGVAADLPDEALPQVRDLLTLL 211
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P L D+ DLL N I+K R IG + L G +G ++R +G DLRK+QPY Y
Sbjct: 212 PKRLRDMEDLLNENYIWKARTQGIGYLDLTGCMALGITGPVLRSTGLPHDLRKAQPYCGY 271
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
DFD+ D Y RYL+R+ EM +S++I+ QCV RL ++ PV +D K+ P
Sbjct: 272 ETYDFDVVTDDQCDSYGRYLIRVKEMHQSIRIVEQCVQRL-ERSVGAPVMITDKKLAWPA 330
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
M SME LIHHFKL TEG VP G+VY AVE+P+GE GV++
Sbjct: 331 DLKVGPDGLGNSPEHIAKIMGHSMEGLIHHFKLVTEGIRVPAGQVYVAVESPRGELGVHM 390
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +PYR R P + +LQA+ +C+G +AD + S+D V G VDR
Sbjct: 391 VSDGGTRPYRVHYRDPSFTNLQAVAAMCEGGMVADAITAVASIDPVMGGVDR 442
>gi|308376001|ref|ZP_07445802.2| NADH dehydrogenase subunit I D nuoD [Mycobacterium tuberculosis
SUMu007]
gi|308344468|gb|EFP33319.1| NADH dehydrogenase subunit I D nuoD [Mycobacterium tuberculosis
SUMu007]
Length = 441
Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats.
Identities = 176/409 (43%), Positives = 243/409 (59%), Gaps = 22/409 (5%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+N GPQHP+ HGVLRLILE++GE V IG LH G EK +E + + Q V +
Sbjct: 37 GERIVVNMGPQHPSTHGVLRLILEIEGETVVEARCGIGYLHTGIEKNLEYRYWTQGVTFV 96
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
R+DY++P E AY L VEKLLGI EIP R +IRVL E+ RI SHL+ + T M++
Sbjct: 97 TRMDYLSPFFNETAYCLGVEKLLGITDEIPERVNVIRVLMMELNRISSHLVALATGGMEL 156
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+TP GF RE ++ +E+ +G RM++AY RPGGV QD+PP +I
Sbjct: 157 GAMTPMFVGFRAREIVLTLFEKITGLRMNSAYIRPGGVAQDLPPNAATEIAEALKQLRQP 216
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L ++ +LL N I+K R +G + L G +G ++R +G DLRKS+PY Y
Sbjct: 217 LREMGELLNENAIWKARTQGVGYLDLTGCMALGITGPILRSTGLPHDLRKSEPYCGYQHY 276
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK--- 300
+FD+ D Y RY++R+ EM ES+KI+ QC+++L GP SD K+ P
Sbjct: 277 EFDVITDDSCDAYGRYMIRVKEMWESMKIVEQCLDKLR----PGPTMISDRKLAWPADLQ 332
Query: 301 -------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISD 347
M SME+LIHHFKL TEG VP G+VY AVE+P+GE GV+++SD
Sbjct: 333 VGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRVPAGQVYVAVESPRGELGVHMVSD 392
Query: 348 GGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GG +PYR R P + +LQ++ +C+G +AD+ A + S+D V G VDR
Sbjct: 393 GGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAVASIDPVMGGVDR 441
>gi|298566727|gb|ADI86484.1| NADH-plastoquinone oxidoreductase subunit 7 [Piptatherum miliaceum]
Length = 393
Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats.
Identities = 167/393 (42%), Positives = 225/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITENPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRVGEMRESIKIIQQAVEKIPG----GPYENLEVRRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|119714787|ref|YP_921752.1| NADH dehydrogenase subunit D [Nocardioides sp. JS614]
gi|218534432|sp|A1SE30|NUOD_NOCSJ RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|119535448|gb|ABL80065.1| NADH dehydrogenase subunit D [Nocardioides sp. JS614]
Length = 446
Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats.
Identities = 173/413 (41%), Positives = 240/413 (58%), Gaps = 19/413 (4%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ + +N GPQHP+ HGVLRLILEL+GE V IG LH G EK +E +T+ Q
Sbjct: 35 EDEAQERIVVNMGPQHPSTHGVLRLILELEGETVTEARAGIGYLHTGIEKNMEYRTWTQG 94
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
V + R+DY++P E Y L +E+LL IE +P + Q++RVL E+ RI SHL+ + T
Sbjct: 95 VTFCTRMDYLSPFFNEMTYVLGIERLLDIEDRVPEKAQVMRVLLMELNRISSHLVAIATG 154
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
M++GALT GF ERE ++ +E +G RM+ A+ RPGGV QD+PP +++I +
Sbjct: 155 GMELGALTVMTIGFRERELVLDLFELITGLRMNHAFIRPGGVAQDMPPGALDEIRGFVAL 214
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
L + +DL N IFK R IG + L G +G ++R +G WDLRK+QPY
Sbjct: 215 MKKRLPEYADLCNANPIFKGRLEGIGHLDLAGCLALGLTGPVLRSTGYPWDLRKTQPYCG 274
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y DFD+ D Y R+ +R+ EM ES++II Q +RL G + PV D KI P
Sbjct: 275 YETYDFDVQTWDTSDSYGRFRIRLNEMWESLRIIEQAADRLAGLDGA-PVMIEDKKIGWP 333
Query: 300 K----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVY 343
R M SME+LIHHFKL TEG+ VP G+ Y VE+P+GE G +
Sbjct: 334 SQLAIGSDGMGNSLDHIRHIMGESMEALIHHFKLVTEGFRVPPGQAYVPVESPRGELGAH 393
Query: 344 LISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++SDGG +P+R R P + +LQA + +G +ADV + S+D V G VDR
Sbjct: 394 VVSDGGTRPFRAHFRDPSFTNLQATSVMAEGGMVADVIVAIASIDPVMGGVDR 446
>gi|298566729|gb|ADI86485.1| NADH-plastoquinone oxidoreductase subunit 7 [Celtica gigantea]
Length = 393
Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats.
Identities = 168/393 (42%), Positives = 226/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIVQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + +L+T N IF +R +G + EDA WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQELITENPIFLERVEGVGFISGEDAVNWGLSGPMLRASGIQWDLRKVDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRVGEMRESIKIIQQAVEKIPG----GPYENLEVRRFKKAKDS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|34501457|ref|NP_904244.1| NADH dehydrogenase subunit 7 [Physcomitrella patens subsp. patens]
gi|75294067|sp|Q6YXP7|NDHH_PHYPA RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|34494827|dbj|BAC85094.1| NADH dehydrogenase 49 kD subunit [Physcomitrella patens subsp.
patens]
Length = 391
Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats.
Identities = 170/396 (42%), Positives = 230/396 (58%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M K++ ++ GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 1 MLATKTKPMIVSMGPHHPSMHGVLRLIVTLDGENVIDCEPILGYLHRGMEKIAENRTIVQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E A EKL I++P R IR++ E+ R+ SHLL +
Sbjct: 61 YLPYVTRWDYLATMFTEAITVNAPEKLTNIQVPKRASYIRMIMLELSRVASHLLWLGPFM 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 121 ADIGAQTPFFYILREREMIYDLFEAATGMRMMHNYFRIGGVAVDLPYGWIDKCLDFCDYF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+N+ L+T N IF +R IG + E+A WG SG M+R SG WDLRK YECY
Sbjct: 181 LPKVNEYERLITNNPIFLKRVEGIGIIGKEEAINWGLSGPMLRASGVQWDLRKVDHYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
ELD+ I K GD RYLVR+ EM+ES+KII+Q + + G GP + + +
Sbjct: 241 DELDWQIQWQKEGDSLARYLVRIGEMKESIKIIQQALKSIPG----GPYENLEARRLQRG 296
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ + E K + + +P E Y VEAPKGE GV+LI D P+R KIR P
Sbjct: 297 KKSEWNNFE-YQFISKKPSPTFKLPKQEHYIRVEAPKGELGVFLIGDDSVFPWRWKIRPP 355
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L KG +LAD+ ILGS+DI+ GEVDR
Sbjct: 356 GFINLQILPQLVKGMKLADIMTILGSIDIIMGEVDR 391
>gi|11467261|ref|NP_043093.1| NADH dehydrogenase subunit 7 [Zea mays]
gi|128833|sp|P25709|NDHH_MAIZE RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|14301|emb|CAA39868.1| ndhH subunit of NADH dehydrogenase [Zea mays]
gi|902290|emb|CAA60354.1| NADH dehydrogenase 49KDa protein [Zea mays]
Length = 393
Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats.
Identities = 166/393 (42%), Positives = 226/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E ++ +Q +P
Sbjct: 6 KRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRSIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPKRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E +G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAVTGMRMMHNYFRIGGVAADLPYGWMDKCLDFCDYFLQG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + +L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQELITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKIDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRVGEMRESIKIIQQAVEKIPG----GPYENLEARRFKKAKNP 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|221633756|ref|YP_002522982.1| NADH dehydrogenase I, D subunit [Thermomicrobium roseum DSM 5159]
gi|221155688|gb|ACM04815.1| NADH dehydrogenase I, D subunit [Thermomicrobium roseum DSM 5159]
Length = 409
Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats.
Identities = 168/390 (43%), Positives = 246/390 (63%), Gaps = 3/390 (0%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
R +N GPQHP+ HGVLR+ L L+GE V DP IG LHRG EKL E+ + Q VP+ D
Sbjct: 23 RELVLNMGPQHPSTHGVLRVRLTLEGETVIACDPVIGYLHRGVEKLGESHRYAQFVPWTD 82
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R DYVA + Y LAVEKL GI+ P R Q R++ +E+ RI SHL+ + T A+D+GAL
Sbjct: 83 RTDYVAAPSNNLGYVLAVEKLCGIQAPERAQYWRMIMAELTRIASHLVWLGTHALDIGAL 142
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
+ L+ F +RE ++ +E+ G+R+ GG ++IPP+L E + +C FP A+
Sbjct: 143 SVSLYTFRDRELILDIFEKFCGARLTTNMMEIGGFSREIPPDLPEMVREFCRYFPKAIRQ 202
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
DLLT N I+ R +G ++ + A +G +G +RGSG +D+RK+ PY Y ++F+
Sbjct: 203 YEDLLTENPIWLARTKGVGVIEPDVAINYGLTGACLRGSGVNYDVRKAMPYLLYDRVEFE 262
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+P+G HGD YDRYLVR+ EMR++++II QC+ ++ GP+ A + V P +
Sbjct: 263 VPLGTHGDVYDRYLVRIEEMRQALRIIEQCLEQVPTD---GPLMAYESPYVIPPHKTVMT 319
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+ E + HF +G+ P GEVY AVE KGE G Y++SDG PYR +IR P + +LQ
Sbjct: 320 TAEDMQRHFIWVIKGFSPPKGEVYHAVEHSKGELGYYIVSDGSPIPYRVRIRTPDFVNLQ 379
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ ++ +G LAD+ A++G++DIV G VDR
Sbjct: 380 SLPYMAQGAMLADIVALIGTIDIVLGSVDR 409
>gi|86608353|ref|YP_477115.1| NAD(P)H-quinone oxidoreductase subunit H [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|123503130|sp|Q2JN25|NDHH_SYNJB RecName: Full=NAD(P)H-quinone oxidoreductase subunit H; AltName:
Full=NAD(P)H dehydrogenase subunit H; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H;
AltName: Full=NDH-1 subunit H; Short=NDH-H
gi|86556895|gb|ABD01852.1| NADH-ubiquinone/plastoquinone oxidoreductase, H subunit
[Synechococcus sp. JA-2-3B'a(2-13)]
Length = 392
Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats.
Identities = 161/397 (40%), Positives = 231/397 (58%), Gaps = 6/397 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + ++ +NFGP HP+ HGVLRL++ LDGE + +P IG LHRG EK+ E +T +Q
Sbjct: 1 MIETRTDRMLLNFGPHHPSMHGVLRLLVTLDGENIVDCEPVIGYLHRGMEKIAENRTVVQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY A M E AVEKL GI +P R +RV+ E+ RI +HLL
Sbjct: 61 YLPYVSRWDYGAGMFNEAITVNAVEKLAGISVPRRASYLRVIMLELTRITNHLLWFGPFL 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSR-MHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
D+GA TP L+ ERE ++ +E +G R ++ YFR GGV D+P E +C+
Sbjct: 121 ADLGAQTPFLYAMREREWILDLFEAVTGMRLINNNYFRVGGVAVDLPYGWTEKCLDFCEY 180
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
F +++ L+T N IF++R +G + +DA WG SG M+R G WDLRK YEC
Sbjct: 181 FLPKVDEYERLVTDNPIFRRRLEGVGAISKQDAINWGLSGPMLRACGVNWDLRKVDHYEC 240
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + D+++ + GDC RY VRM EMRES KI++Q V L G +++
Sbjct: 241 YDDFDWEVAVYPEGDCLARYRVRMKEMRESCKIVQQAVKALPGGPFEN---LEAKRMLEG 297
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
+++ + I K + + +P GE Y VE+ KGE G+Y++ D P+R KIR
Sbjct: 298 PKSEWNKGDYQFIS--KKPSANFKIPKGEAYVRVESAKGELGIYIVGDDNVCPWRWKIRP 355
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
PG+ +LQ + L +G ++AD+ AILGS+DI+ GEVDR
Sbjct: 356 PGFVNLQVLPQLIRGMKVADMIAILGSIDIIMGEVDR 392
>gi|298566663|gb|ADI86452.1| NADH-plastoquinone oxidoreductase subunit 7 [Distichlis spicata]
Length = 393
Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats.
Identities = 166/393 (42%), Positives = 225/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWMDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKIDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EM+ES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRIGEMKESIKIIQQAVEKIPG----GPYENLEARRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|298566725|gb|ADI86483.1| NADH-plastoquinone oxidoreductase subunit 7 [Achnatherum
occidentale]
Length = 393
Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats.
Identities = 167/393 (42%), Positives = 225/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITENPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRVGEMRESIKIIQQAVEKIPG----GPYENLEVRRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFQLSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|298566747|gb|ADI86494.1| NADH-plastoquinone oxidoreductase subunit 7 [Schizachne
purpurascens]
Length = 393
Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats.
Identities = 169/393 (43%), Positives = 225/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + EDA WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITQNPIFLERVEGVGFISGEDAVNWGLSGPMLRASGVQWDLRKVDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRVGEMRESIKIIQQAVEKIPG----GPYENLEVRRFNKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YLI D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLIGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|298566733|gb|ADI86487.1| NADH-plastoquinone oxidoreductase subunit 7 [Nassella viridula]
Length = 393
Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats.
Identities = 167/393 (42%), Positives = 225/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITENPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRIGEMRESIKIIQQAVEKIPG----GPYENLEVRRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFQLSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|48478737|ref|YP_024344.1| NADH dehydrogenase subunit 7 [Saccharum hybrid cultivar SP-80-3280]
gi|50812600|ref|YP_054701.1| NADH dehydrogenase subunit 7 [Saccharum officinarum]
gi|260677473|ref|YP_003208255.1| NADH-plastoquinone oxidoreductase subunit 7 [Coix lacryma-jobi]
gi|75290169|sp|Q6ENP1|NDHH_SACOF RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|75291233|sp|Q6L3D4|NDHH_SACHY RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|48478639|gb|AAT44659.1| NADH dehydrogenase subunit 7 [Saccharum hybrid cultivar SP80-3280]
gi|49659584|dbj|BAD27365.1| NADH dehydrogenase 49kD subunit [Saccharum hybrid cultivar NCo 310]
gi|209361411|gb|ACI43326.1| NADH-plastoquinone oxidoreductase subunit 7 [Coix lacryma-jobi]
Length = 393
Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats.
Identities = 167/393 (42%), Positives = 226/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E ++ +Q +P
Sbjct: 6 KRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRSIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWMDKCLDFCDYFLQG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKIDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRVGEMRESIKIIQQAVEKIPG----GPYENLEARRFKKAKNP 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|298566723|gb|ADI86482.1| NADH-plastoquinone oxidoreductase subunit 7 [Timouria
saposhnikovii]
Length = 393
Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats.
Identities = 167/393 (42%), Positives = 225/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITENPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRVGEMRESIKIIQQAVEKIPG----GPYENLEVRRFKEAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFQLSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|319955919|ref|YP_004167182.1| NADH dehydrogenase subunit d [Nitratifractor salsuginis DSM 16511]
gi|319418323|gb|ADV45433.1| NADH dehydrogenase subunit D [Nitratifractor salsuginis DSM 16511]
Length = 409
Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats.
Identities = 171/394 (43%), Positives = 241/394 (61%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++ + INFGPQHP+AHG LRLILEL GE V + P IG LHRG EK+ E + + +
Sbjct: 18 ERDDNTMVINFGPQHPSAHGQLRLILELQGEQVVKAHPDIGYLHRGIEKMAENMIYNEFL 77
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DR+DY+A + +A+ALAVE+L+G+E+P R Q+IR + E+ RI+SHL + T A+D
Sbjct: 78 PTTDRMDYIASTSNNYAFALAVERLIGLEVPRRAQVIRTMLLELNRIISHLFFLATHALD 137
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA++ L+ F ERE M E G+R+ + R GGV D+P + + + D P
Sbjct: 138 VGAMSIFLYAFREREYAMDLMEDYCGARLTHSAVRIGGVPLDLPEGWLTKLTDFIDRLPE 197
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ DLLT NRI+K R ++G V E A WG +GVM+RGSG +D+RK +PYE Y E
Sbjct: 198 QIKLYEDLLTENRIWKMRLEDVGIVTPEQALEWGCTGVMLRGSGIKYDVRKEEPYELYGE 257
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LDFDIP+ D Y RY + M EM++SV+I+RQ + G + A P+ + +
Sbjct: 258 LDFDIPVSDRCDSYGRYRLYMEEMKQSVRILRQLIGMYAGTESQ--LMAHAPQYISAPKE 315
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
++ +L+ HF L T+G P G VYA E+PKGE G ++ S+G YR K RAP +
Sbjct: 316 EIMTQNYALMQHFVLVTQGMRPPKGTVYAPTESPKGELGFWIRSEGEPYAYRLKARAPSF 375
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H ++ + G + DV I+GS +IVFGEVDR
Sbjct: 376 FHTGILQDILPGTYIPDVVTIIGSTNIVFGEVDR 409
>gi|298566741|gb|ADI86491.1| NADH-plastoquinone oxidoreductase subunit 7 [Ampelodesmos
mauritanicus]
Length = 393
Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats.
Identities = 167/393 (42%), Positives = 225/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITENPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRVGEMRESIKIIQQAVEKIPG----GPYENLEVRRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|298566745|gb|ADI86493.1| NADH-plastoquinone oxidoreductase subunit 7 [Melica cupanii]
Length = 393
Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats.
Identities = 170/393 (43%), Positives = 225/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R IG + EDA WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITQNPIFLERVEGIGFISGEDAVNWGLSGPMLRASGVQWDLRKVDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRVGEMRESIKIIQQAVEKIPG----GPYENLEVRRFNKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YLI D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLIGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|298566643|gb|ADI86442.1| NADH-plastoquinone oxidoreductase subunit 7 [Chasmanthium nitidum]
gi|307697325|gb|ADN86117.1| NADH dehydrogenase subunit 7 [Chasmanthium latifolium]
Length = 393
Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats.
Identities = 167/393 (42%), Positives = 225/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWMDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKIDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRIGEMRESIKIIQQAVEKIPG----GPYENLEARRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|298566739|gb|ADI86490.1| NADH-plastoquinone oxidoreductase subunit 7 [Stipa barbata]
gi|298566743|gb|ADI86492.1| NADH-plastoquinone oxidoreductase subunit 7 [Trikeraia pappiformis]
Length = 393
Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats.
Identities = 167/393 (42%), Positives = 225/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITENPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRIGEMRESIKIIQQAVEKIPG----GPYENLEVRRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|333025116|ref|ZP_08453180.1| putative NADH dehydrogenase subunit D [Streptomyces sp. Tu6071]
gi|332744968|gb|EGJ75409.1| putative NADH dehydrogenase subunit D [Streptomyces sp. Tu6071]
Length = 399
Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats.
Identities = 178/402 (44%), Positives = 242/402 (60%), Gaps = 21/402 (5%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
GPQHP+ HGVLRLILE+DGE V IG LH G EK +E +T+ Q + R+DY+
Sbjct: 1 MGPQHPSTHGVLRLILEIDGETVTEARCGIGYLHTGIEKNLEFRTWTQGTTFVTRMDYLT 60
Query: 73 PMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
P E AY L VE+LLGIE +P R ++RVL E+ RI SHL+ + T M++G+ T +
Sbjct: 61 PFFNETAYCLGVERLLGIEDDVPDRANIVRVLLMELNRISSHLVAIATGGMELGSTTIMI 120
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
+GF +RE + +E +G RM+ A+ RPGG+ QD+PP ++ + + + L + L
Sbjct: 121 YGFRDRELCLDLFELFTGLRMNHAFVRPGGLAQDLPPGSLDALAEFVKTMRHNLTEYDKL 180
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
TGN IF+ R ++G + L G +G ++R +G DLRK+QPY Y DFDIP
Sbjct: 181 ATGNPIFRARMKDVGHLDLTGCMALGATGPILRSAGLPHDLRKAQPYCGYETYDFDIPTD 240
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK---------- 300
D Y R+L+RM EMRES++II QC RL GPV +D KI P
Sbjct: 241 DGCDSYGRFLIRMAEMRESLRIIEQCAERLRQ---PGPVMVADKKIAWPAQLAQGPDGIG 297
Query: 301 ------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYR 354
R M SME+LIHHFKL TEG+ VP G+ YAAVE+ KGE G +++SDGG +P+R
Sbjct: 298 NSLDHIREIMGTSMEALIHHFKLVTEGFRVPPGQAYAAVESAKGELGAHVVSDGGTRPFR 357
Query: 355 CKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
R P + +LQAM +C+G Q+ADV + S+D V G VDR
Sbjct: 358 VHFRDPSFTNLQAMAAMCEGGQVADVIVAVASIDPVMGGVDR 399
>gi|60117114|ref|YP_209577.1| NADH dehydrogenase subunit 7 [Polysphondylium pallidum]
gi|51339678|gb|AAU00592.1| NADH dehydrogenase subunit 7 [Polysphondylium pallidum]
Length = 406
Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats.
Identities = 226/397 (56%), Positives = 295/397 (74%), Gaps = 10/397 (2%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
++FT+NFGPQHPAAHGVLRLI+ELD E V+R+DPHIGLLHRGTEKLIE KT+ QA+PYF
Sbjct: 14 IKNFTLNFGPQHPAAHGVLRLIVELDSETVKRIDPHIGLLHRGTEKLIEFKTYTQALPYF 73
Query: 66 DRLDYVAPMNQEHAYALAVEKLL------GIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
DRLDYV+ QEHAY+LAVE+L +E+P+R ++IR+L+SEI R+L+H+L TT
Sbjct: 74 DRLDYVSMQVQEHAYSLAVERLYLQSYGIELEVPVRAKVIRILFSEITRVLNHILATTTH 133
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
AMDVGALTP LW FEEREKLM FYER SG+RMH+AY RPGGV D+P L EDI +C
Sbjct: 134 AMDVGALTPFLWAFEEREKLMEFYERVSGARMHSAYIRPGGVAFDLPLNLSEDIYKFCQQ 193
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ L +I D+L NRI+KQR V+IGTV E++ GF+GVM+RGSG +D+RK+ PY+
Sbjct: 194 YRKRLEEIEDMLINNRIWKQRLVDIGTVSSEESQNAGFTGVMLRGSGIIYDIRKNYPYDD 253
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + +F+I +G+ + Y R+++R+ EM +S+ II Q +N L K G + +V P
Sbjct: 254 YDKYNFNIIVGEDNNSYTRFILRIKEMYQSLMIIEQALNNL----KPGLIKIEGLNLVAP 309
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
RA +K+ MES I+HFK ++EGY +P E+Y VEAPKGEFGVYL S+ KPYRC+I+A
Sbjct: 310 DRAFVKKDMESCINHFKYFSEGYVIPANEIYTIVEAPKGEFGVYLKSNNTAKPYRCRIKA 369
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
PG+ HLQ + + K H LADV ++G+ DIVFGEVDR
Sbjct: 370 PGFLHLQGLNMMGKDHLLADVVTLIGTQDIVFGEVDR 406
>gi|118614548|ref|YP_899463.1| NADH-plastoquinone oxidoreductase subunit 7 [Sorghum bicolor]
gi|218527792|sp|A1E9Y0|NDHH_SORBI RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|118201182|gb|ABK79552.1| NADH-plastoquinone oxidoreductase subunit 7 [Sorghum bicolor]
Length = 393
Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats.
Identities = 167/393 (42%), Positives = 226/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E ++ +Q +P
Sbjct: 6 KRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRSIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWMDKCLDFCDYFLQG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITRNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKIDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRVGEMRESIKIIQQAVEKIPG----GPYENLEARRFKKAKNP 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|14194988|sp|Q9MUL0|NDHH_MESVI RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|7259587|gb|AAF43888.1|AF166114_100 49 kDa subunit of NADH-plastoquinone [Mesostigma viride]
Length = 391
Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats.
Identities = 169/396 (42%), Positives = 230/396 (58%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + K+ I+ GP HP+ HGVLRLI+ LDGE V +P +G LHR EK+ E +T +Q
Sbjct: 1 MLQTKTDPMVISMGPHHPSMHGVLRLIVTLDGENVIDCEPVLGYLHRAMEKIAENRTIVQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E A EKL IE+P R IRV+ E+ RI SHLL +
Sbjct: 61 YLPYVTRWDYLATMFTEAITVNAPEKLANIEVPKRASYIRVIMLELSRIASHLLWLGPFM 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + ERE + +E A+G RM YFR GGV D+P V+ + D F
Sbjct: 121 ADIGAQTPFFYILREREMIYDLFEAATGMRMMHNYFRIGGVASDLPYGWVDKCLDFSDYF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+++ L+T N IF +R ++G + E+A WG SG M+R SG WDLRK YECY
Sbjct: 181 LPKVDEYERLITNNPIFLKRVRDVGFISREEAINWGLSGPMLRASGVQWDLRKVDNYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
ELD+++ GDC RYLVR+ EMRES KII+Q + + G GP + + +
Sbjct: 241 GELDWNVQWQSDGDCLARYLVRLGEMRESTKIIQQALKAIPG----GPYENLEARRLSKG 296
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R + E K + + +P E Y VEAPKGE GV+L+ D P+R KIR+P
Sbjct: 297 RKSEWNNFE-YQFVGKKPSPTFKIPKQEHYVRVEAPKGELGVFLMGDDNVFPWRWKIRSP 355
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ ++Q + L +G +LAD+ ILGS+DI+ GEVDR
Sbjct: 356 GFINVQILPELVRGMKLADIMTILGSIDIIMGEVDR 391
>gi|121534365|ref|ZP_01666189.1| NADH dehydrogenase I, D subunit [Thermosinus carboxydivorans Nor1]
gi|121307135|gb|EAX48053.1| NADH dehydrogenase I, D subunit [Thermosinus carboxydivorans Nor1]
Length = 365
Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats.
Identities = 164/392 (41%), Positives = 235/392 (59%), Gaps = 29/392 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
++ +T+N GPQHP+ HGVLR++LELDGE V R P G LHRG EKL E T+ Q P
Sbjct: 2 TRTEVYTLNMGPQHPSTHGVLRVVLELDGETVVRATPEFGYLHRGIEKLAEKLTYQQITP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDY++ M Y AVEKL+G+ +P R + +R++ E+ RI SHLL + + A+D+
Sbjct: 62 YTDRLDYLSAMGNNLGYCQAVEKLMGLTVPERAEYLRIIMVELNRIASHLLFLGSIAIDL 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G T ++ F +RE+++ ++ A G+R+ Y R GGV D+PPE + + + D FP+
Sbjct: 122 GGSTGLMYAFRDRERILDLFDLACGARLTYNYIRIGGVMADVPPEFPDAVRRFLDDFPAM 181
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L + L+TGN IF R + + E A G +G ++R SG +DLRK++PY Y
Sbjct: 182 LEEYHGLITGNEIFYYRLKDTAIISGERALALGLTGPVLRASGVDYDLRKAEPYGIYDRF 241
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DF +P+G GD +DRYLVRM EM ES +I+RQ +++L GPV A PK++
Sbjct: 242 DFRVPLGSKGDNWDRYLVRMEEMAESARIVRQALDQLPA----GPVMAQVPKVI------ 291
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
P GEVY +E P+GE G Y++SDG KPYR +R P +
Sbjct: 292 -------------------KPPAGEVYHRIENPRGELGYYIVSDGSTKPYRFHVRRPSFI 332
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+L ++ LC+G ++ADV A+L +LD V GEVD
Sbjct: 333 NLAVVDELCRGGKVADVVAVLATLDPVMGEVD 364
>gi|126165881|ref|NP_038450.2| NADH dehydrogenase subunit 7 [Mesostigma viride]
Length = 393
Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats.
Identities = 169/396 (42%), Positives = 230/396 (58%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + K+ I+ GP HP+ HGVLRLI+ LDGE V +P +G LHR EK+ E +T +Q
Sbjct: 3 MLQTKTDPMVISMGPHHPSMHGVLRLIVTLDGENVIDCEPVLGYLHRAMEKIAENRTIVQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E A EKL IE+P R IRV+ E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEAITVNAPEKLANIEVPKRASYIRVIMLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + ERE + +E A+G RM YFR GGV D+P V+ + D F
Sbjct: 123 ADIGAQTPFFYILREREMIYDLFEAATGMRMMHNYFRIGGVASDLPYGWVDKCLDFSDYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+++ L+T N IF +R ++G + E+A WG SG M+R SG WDLRK YECY
Sbjct: 183 LPKVDEYERLITNNPIFLKRVRDVGFISREEAINWGLSGPMLRASGVQWDLRKVDNYECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
ELD+++ GDC RYLVR+ EMRES KII+Q + + G GP + + +
Sbjct: 243 GELDWNVQWQSDGDCLARYLVRLGEMRESTKIIQQALKAIPG----GPYENLEARRLSKG 298
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R + E K + + +P E Y VEAPKGE GV+L+ D P+R KIR+P
Sbjct: 299 RKSEWNNFE-YQFVGKKPSPTFKIPKQEHYVRVEAPKGELGVFLMGDDNVFPWRWKIRSP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ ++Q + L +G +LAD+ ILGS+DI+ GEVDR
Sbjct: 358 GFINVQILPELVRGMKLADIMTILGSIDIIMGEVDR 393
>gi|268678783|ref|YP_003303214.1| NADH dehydrogenase I, D subunit [Sulfurospirillum deleyianum DSM
6946]
gi|268616814|gb|ACZ11179.1| NADH dehydrogenase I, D subunit [Sulfurospirillum deleyianum DSM
6946]
Length = 408
Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats.
Identities = 170/394 (43%), Positives = 245/394 (62%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ +NFGPQHP++HG LRLILELDGE V + P IG LHRG EK+ E + + +
Sbjct: 17 EREDNHMIVNFGPQHPSSHGQLRLILELDGEKVSKATPDIGYLHRGMEKMAENMIYNEFL 76
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DR+DY+A + + ++LAVEKL+G+E+P R ++IR+L E+ RI SHL + T A+D
Sbjct: 77 PTTDRMDYIAASSNNYGFSLAVEKLIGLEVPRRAKVIRMLLLELNRITSHLFWLATHALD 136
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+T L+ F ERE + E G+R+ + R GGV D+P +E++ + + P
Sbjct: 137 VGAMTIFLYTFREREYALDLIEDYCGARLTHSSVRIGGVPLDLPKGWLENLNRYLNRLPH 196
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ D LL NRI+K R +G V E A WG SG M+RGSG AWD+RK +PYE Y E
Sbjct: 197 DITDYEALLDENRIWKMRLEGVGVVTPEQAQSWGCSGPMLRGSGIAWDIRKEEPYELYDE 256
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++FD+P+ D Y RY + M EM++S++I++Q + G + + A P+ + +
Sbjct: 257 VEFDVPVSTTCDSYGRYKLHMEEMKQSIRILKQLIPMYEGTSPE--IMAHAPQYISAPKE 314
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ +L+ HF L T+G PVGEVY A E+PKGE G Y+ S G PYR K+R P +
Sbjct: 315 QIMTQNYALMQHFVLVTQGMRPPVGEVYVATESPKGELGFYINSQGEPYPYRLKLRTPSF 374
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H ++ L G LADV AI+G+ +IVFGE+DR
Sbjct: 375 FHTAFLQELLVGEYLADVVAIIGNANIVFGEIDR 408
>gi|108796795|ref|YP_636375.1| NADH dehydrogenase subunit 7 [Staurastrum punctulatum]
gi|122211816|sp|Q32S01|NDHH_STAPU RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|61393563|gb|AAX45704.1| 49 kDa subunit of NADH-plastoquinone oxidoreductase [Staurastrum
punctulatum]
Length = 395
Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats.
Identities = 170/397 (42%), Positives = 229/397 (57%), Gaps = 5/397 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M K K+ ++ GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T LQ
Sbjct: 3 MLKTKADPMIVSMGPHHPSMHGVLRLIVTLDGENVIDCEPILGYLHRGMEKIAENRTTLQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E A E+L I++P R IRV+ E+ R+ SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEAVTVNAPERLANIQVPKRASYIRVIMLELSRLASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE + +E A+G RM YFR GGV D+P V+ +CD F
Sbjct: 123 ADIGAQTPFFYIFREREMIYDLFESATGMRMMHNYFRIGGVAVDLPYGWVDKCLDFCDYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+++ L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY
Sbjct: 183 LPKIDEYERLITRNPIFLKRVEGVGFIGREEAINWGLSGPMLRASGVQWDLRKVDHYECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E D+ + GDC RYLVR+ EMRES KII+Q + + G GP + + +
Sbjct: 243 DEFDWQVEWQTEGDCLARYLVRIGEMRESTKIIQQALKSIPG----GPYENLEARRIGLI 298
Query: 301 RADMKRSME-SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
D + + K + + +P E Y VEAPKGE G+YLI D P+R KIR
Sbjct: 299 GTDSAQWNDFEYQFISKKPSPTFKLPKQEHYVRVEAPKGELGIYLIGDDSIFPWRWKIRP 358
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
PG+ +LQ + L +G +LAD+ ILGS+DI+ GEVDR
Sbjct: 359 PGFINLQILPQLLRGVKLADIMTILGSIDIIMGEVDR 395
>gi|326910752|gb|AEA11194.1| NADH dehydrogenase subunit 7 [Selaginella moellendorffii]
gi|327176875|gb|AEA29881.1| NADH dehydrogenase subunit 7 [Selaginella moellendorffii]
Length = 397
Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats.
Identities = 224/389 (57%), Positives = 291/389 (74%), Gaps = 4/389 (1%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
+F +N GPQHPAAHGVLRL+L + GE+VER +P IGLL+RG EKL+E KT+LQA+PYFDR
Sbjct: 13 NFALNLGPQHPAAHGVLRLVLHMAGEVVERAEPQIGLLYRGMEKLVEYKTYLQALPYFDR 72
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
LDYV+ M QE+AY+LAVE L+ P R Q IRVL++E+ R+L+HLL +TT AMDVGA+T
Sbjct: 73 LDYVSMMAQEYAYSLAVETLMDAHSPARSQYIRVLFAELTRLLNHLLALTTHAMDVGAVT 132
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
P L FEERE+L+ YER SG+RMHA Y RPGG+ D+P + ED+G F + ++
Sbjct: 133 PFLHAFEERERLIECYERVSGARMHATYLRPGGMAHDLPSGMCEDLGVLTQQFAARVDGY 192
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
++LT NRI+KQR V+IG V + A WGF+GV++RGSG WDLR++ PY+ Y L+FD+
Sbjct: 193 EEMLTHNRIWKQRLVDIGPVHGQQALDWGFTGVLLRGSGVCWDLRQAAPYDVYDLLEFDV 252
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
P+G GDCYDRY +R+ EMR+S +++ +CV+ L G A D K+ PP R+ +K S
Sbjct: 253 PVGTRGDCYDRYRIRLEEMRQSQRLLVECVHDLPD----GSTIADDRKLCPPHRSAVKHS 308
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
MESLIHHF+LY EGY VP Y AVEAPKGEFGV ++S+G N+ YRC IRAPG+AHLQ
Sbjct: 309 MESLIHHFQLYAEGYAVPAASTYTAVEAPKGEFGVLVVSNGSNRSYRCAIRAPGFAHLQG 368
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++F+ K H LADV I+G+ DIVFGEVDR
Sbjct: 369 LDFMSKHHMLADVVTIIGTQDIVFGEVDR 397
>gi|298566719|gb|ADI86480.1| NADH-plastoquinone oxidoreductase subunit 7 [Anisopogon avenaceus]
Length = 393
Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats.
Identities = 167/393 (42%), Positives = 225/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRIGEMRESIKIIQQAVEKIPG----GPYENLEVRRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|240169667|ref|ZP_04748326.1| NADH dehydrogenase subunit D [Mycobacterium kansasii ATCC 12478]
Length = 432
Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats.
Identities = 179/409 (43%), Positives = 240/409 (58%), Gaps = 22/409 (5%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+N GPQHP+ HGVLRLILE++GE + IG LH G EK +E + + Q V +
Sbjct: 28 GERIVVNMGPQHPSTHGVLRLILEIEGETIIEARCGIGYLHTGIEKNLEYRYWTQGVTFV 87
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
R+DY++P E AY L VEKLLGI IP R +IRVL E+ RI SHL+ + T M++
Sbjct: 88 TRMDYLSPFFNETAYCLGVEKLLGITDQIPERVNVIRVLLMELNRISSHLVALATGGMEL 147
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+T GF RE ++ +E +G RM+ AY RPGGV QD+PP V DI +
Sbjct: 148 GAMTAMFIGFRAREIILNVFESITGLRMNHAYIRPGGVAQDLPPNAVTDIAEALNQLRQP 207
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L ++ DLL N I+K R IG + L G +G ++R +G DLRKS+PY Y
Sbjct: 208 LRELGDLLNENAIWKARTQGIGYLDLTGCMALGITGPILRSTGLPHDLRKSEPYCGYENY 267
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK--- 300
+FD+ D Y RY++R+ EM ESVKI+ QC+++L K GP D KI P
Sbjct: 268 EFDVITDDACDAYGRYMIRVKEMWESVKIVEQCLDKL----KPGPTMIEDRKIAWPADLK 323
Query: 301 -------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISD 347
M SME+LIHHFKL TEG VP G+VY AVE+P+GE GV+++SD
Sbjct: 324 VGPDGMGNSPEHIAKIMGSSMEALIHHFKLVTEGIRVPPGQVYVAVESPRGELGVHMVSD 383
Query: 348 GGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GG +PYR R P + +LQA+ +C+G +AD+ + S+D V G VDR
Sbjct: 384 GGTRPYRVHYRDPSFTNLQAVAAMCEGGMVADLITAVASIDPVMGGVDR 432
>gi|118430359|ref|YP_874793.1| NADH-plastoquinone oxidoreductase subunit 7 [Agrostis stolonifera]
gi|218527813|sp|A1EA65|NDHH_AGRST RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|118201268|gb|ABK79637.1| NADH-plastoquinone oxidoreductase subunit 7 [Agrostis stolonifera]
Length = 393
Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats.
Identities = 168/393 (42%), Positives = 226/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYECY++
Sbjct: 186 VVEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDPYECYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRVSEMRESIKIIQQAVEKIPG----GPYENLEVRRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|298566669|gb|ADI86455.1| NADH-plastoquinone oxidoreductase subunit 7 [Danthonia californica]
Length = 393
Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats.
Identities = 167/393 (42%), Positives = 225/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDFMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPVLGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWMDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKIDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRIGEMRESIKIIQQAVEKIPG----GPYENLEARRFKSAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|298566717|gb|ADI86479.1| NADH-plastoquinone oxidoreductase subunit 7 [Sinochasea trigyna]
Length = 393
Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats.
Identities = 168/393 (42%), Positives = 225/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P +E +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIEKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 IVEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRIGEMRESIKIIQQAVEKIPG----GPYENLEVRRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|298566755|gb|ADI86498.1| NADH-plastoquinone oxidoreductase subunit 7 [Diarrhena obovata]
Length = 393
Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats.
Identities = 167/393 (42%), Positives = 225/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRVGEMRESIKIIQQAVEKIPG----GPYENLEVRRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQTLPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|218754928|ref|ZP_03533724.1| NADH dehydrogenase subunit D [Mycobacterium tuberculosis GM 1503]
gi|254552239|ref|ZP_05142686.1| NADH dehydrogenase subunit D [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|289763331|ref|ZP_06522709.1| NADH dehydrogenase I (chain D) nuoD (NADH-ubiquinone oxidoreductase
chain D) [Mycobacterium tuberculosis GM 1503]
gi|289710837|gb|EFD74853.1| NADH dehydrogenase I (chain D) nuoD (NADH-ubiquinone oxidoreductase
chain D) [Mycobacterium tuberculosis GM 1503]
Length = 440
Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats.
Identities = 175/409 (42%), Positives = 242/409 (59%), Gaps = 22/409 (5%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+N GPQHP+ HGVLRLILE++GE V IG LH G EK +E + + Q V +
Sbjct: 36 GERIVVNMGPQHPSTHGVLRLILEIEGETVVEARCGIGYLHTGIEKNLEYRYWTQGVTFV 95
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
R+DY++P E AY L VEKLLGI EIP R +IRVL E+ RI SHL+ + T M++
Sbjct: 96 TRMDYLSPFFNETAYCLGVEKLLGITDEIPERVNVIRVLMMELNRISSHLVALATGGMEL 155
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+TP GF RE ++ +E+ +G RM++AY RPGGV QD+PP +I
Sbjct: 156 GAMTPMFVGFRAREIVLTLFEKITGLRMNSAYIRPGGVAQDLPPNAATEIAEALKQLRQP 215
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L ++ +LL N I+K R +G + L G +G ++R +G DLRKS+PY Y
Sbjct: 216 LREMGELLNENAIWKARTQGVGYLDLTGCMALGITGPILRSTGLPHDLRKSEPYCGYQHY 275
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK--- 300
+FD+ D Y RY++R+ EM ES+KI+ QC+++L GP SD K+ P
Sbjct: 276 EFDVITDDSCDAYGRYMIRVKEMWESMKIVEQCLDKLR----PGPTMISDRKLAWPADLQ 331
Query: 301 -------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISD 347
M SME+LIHHFKL TEG VP G+VY AVE+P+GE GV+++SD
Sbjct: 332 VGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRVPAGQVYVAVESPRGELGVHMVSD 391
Query: 348 GGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G +PYR R P + +LQ++ +C+G +AD+ A + S+D V G VDR
Sbjct: 392 AGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAVASIDPVMGGVDR 440
>gi|298566775|gb|ADI86508.1| NADH-plastoquinone oxidoreductase subunit 7 [Briza minor]
Length = 393
Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats.
Identities = 166/393 (42%), Positives = 225/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EM+ES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRVSEMKESIKIIQQAVEKIPG----GPYENLEVRRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YKFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|298566773|gb|ADI86507.1| NADH-plastoquinone oxidoreductase subunit 7 [Torreyochloa pallida
var. pauciflora]
Length = 393
Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats.
Identities = 167/393 (42%), Positives = 225/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRVSEMRESIKIIQQAVEKIPG----GPYENLEVRRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFV 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|298566715|gb|ADI86478.1| NADH-plastoquinone oxidoreductase subunit 7 [Phaenosperma globosa]
Length = 393
Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats.
Identities = 166/393 (42%), Positives = 225/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD R+LVR+ EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARFLVRIGEMRESIKIIQQAVEKIPG----GPYENLEVRRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|298566735|gb|ADI86488.1| NADH-plastoquinone oxidoreductase subunit 7 [Oryzopsis asperifolia]
Length = 393
Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats.
Identities = 167/393 (42%), Positives = 225/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITENPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRVGEMRESIKIIQQAVEKIPG----GPYENLEVRRFKKTKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|317123848|ref|YP_004097960.1| NADH dehydrogenase subunit D [Intrasporangium calvum DSM 43043]
gi|315587936|gb|ADU47233.1| NADH dehydrogenase subunit D [Intrasporangium calvum DSM 43043]
Length = 475
Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats.
Identities = 181/411 (44%), Positives = 240/411 (58%), Gaps = 19/411 (4%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+N GPQHP+ HGVLRLILELDGE V +G LH G EK +E +T++Q V +
Sbjct: 65 HEERIVVNMGPQHPSTHGVLRLILELDGETVTEARAGVGYLHTGIEKNMEYRTWVQGVTF 124
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
R+DY+ PM QE AY LA+EKLLGI +IP R ++RVL E+ RI SHL+ + T M+
Sbjct: 125 CTRMDYLTPMFQETAYCLAIEKLLGITDDIPERASVLRVLMMELTRISSHLVCIGTGGME 184
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA T GF ERE+++ +E +G RM+ AY RPGGV QD+PP ++ +
Sbjct: 185 MGATTVMTVGFRERERILRIFEMVTGLRMNNAYIRPGGVAQDLPPGAIDALREMVPELRR 244
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ ++ L+ N I K R V++G + L G +G M+R +G DLRKS PY Y
Sbjct: 245 GIGELEALVNENPIVKGRMVDVGVLSLAACMALGVTGPMLRSTGLPHDLRKSAPYCGYET 304
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKV-GPVSASDPKIVPPK- 300
DFD+ D Y R +R+ EM ES++I+ QC +RL G V +D KI P
Sbjct: 305 YDFDVITRTSSDSYGRMRIRLDEMYESLRIVEQCTDRLQATEGSQGAVMVADKKIAWPAQ 364
Query: 301 ---------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLI 345
R M SMESLIHHFKL TEG+ VP G+ Y AVE+ KGE G +L+
Sbjct: 365 LALGGDGLGNSLDHIREIMGTSMESLIHHFKLVTEGFRVPPGQAYVAVESAKGELGCHLV 424
Query: 346 SDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
SDGG +PYR R P + +LQA+ LC+G QL DV + S+D V G VDR
Sbjct: 425 SDGGTRPYRAHFRDPSFNNLQAVAALCEGGQLGDVIVAVASIDPVMGGVDR 475
>gi|225850947|ref|YP_002731181.1| NADH-quinone oxidoreductase subunit c/d (nadhdehydrogenase i
subunit c/d) (ndh-1 subunit c/d) (Nuo3/nuo4)
[Persephonella marina EX-H1]
gi|225645974|gb|ACO04160.1| NADH-quinone oxidoreductase subunit c/d (nadhdehydrogenase i
subunit c/d) (ndh-1 subunit c/d) (Nuo3/nuo4)
[Persephonella marina EX-H1]
Length = 582
Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats.
Identities = 167/393 (42%), Positives = 247/393 (62%), Gaps = 1/393 (0%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+K +N+GP HP HG + + +++GE ++ + +G LHRG EKL E T+ Q +P
Sbjct: 191 EKRSQIVLNWGPLHPGTHGTIWFLFDMEGETIKNCEIILGQLHRGIEKLAEDLTYTQIIP 250
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY++ + + AY VEKLLG+E P + + IR + E+ RI SHLL + T A+D+
Sbjct: 251 YTDRMDYISALCSQVAYVNTVEKLLGVEPPEKAKWIRTMMCELQRINSHLLWLGTYALDL 310
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALT L+ F EREK+M E +G R+++ Y R GG+ +D+P ++ I + FP
Sbjct: 311 GALTIFLYAFREREKIMDIIEGIAGIRLNSTYIRIGGLSKDLPEGALDVIKHFLQDFPEK 370
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L++ +LT NRI+ +RN+NIG V E + +G +GV+ R +G +D+R QP + Y ++
Sbjct: 371 LDEYETILTKNRIWLRRNLNIGIVNKEQVYQYGLTGVVARSAGVPYDIRMLQPTDAYDKV 430
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DFDIP+G+ GDCYDRYL+RM EMR+S++II QCV ++ +S +P V P +
Sbjct: 431 DFDIPLGRVGDCYDRYLIRMEEMRQSLRIIEQCVEKIEKLKDDKHISTENP-YVLPTLDE 489
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ S+ES++ F L G P GE+Y + E P+GE G Y++S G KPYR KIR+ +
Sbjct: 490 VFNSIESMVKDFNLRIYGEQAPEGEIYMSGENPRGELGFYIVSKGDGKPYRIKIRSGAFY 549
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ L KG +AD A+LGSLD V GE DR
Sbjct: 550 NLQIFPELIKGRTVADAVALLGSLDPVVGETDR 582
>gi|298566771|gb|ADI86506.1| NADH-plastoquinone oxidoreductase subunit 7 [Trisetum cernuum
subsp. canescens]
Length = 393
Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats.
Identities = 167/393 (42%), Positives = 225/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRVSEMRESIKIIQQAVEKIPG----GPYENLEVRRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|298566737|gb|ADI86489.1| NADH-plastoquinone oxidoreductase subunit 7 [Hesperostipa comata]
Length = 393
Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats.
Identities = 167/393 (42%), Positives = 225/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLHG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITENPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRIGEMRESIKIIQQAVEKIPG----GPYENLEVRRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSIFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|206889985|ref|YP_002248949.1| NADH dehydrogenase i, d subunit [Thermodesulfovibrio yellowstonii
DSM 11347]
gi|229891266|sp|B5YL34|NUOD2_THEYD RecName: Full=NADH-quinone oxidoreductase subunit D 2; AltName:
Full=NADH dehydrogenase I subunit D 2; AltName:
Full=NDH-1 subunit D 2
gi|206741923|gb|ACI20980.1| NADH dehydrogenase i, d subunit [Thermodesulfovibrio yellowstonii
DSM 11347]
Length = 401
Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats.
Identities = 173/398 (43%), Positives = 256/398 (64%), Gaps = 4/398 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
++K +F + GP HPA HGVL+L+ E +GE V + P +G LHRG EKL E+KT+
Sbjct: 6 IEKVSDTTFVLQMGPHHPATHGVLKLLCEFEGERVINIKPDVGYLHRGVEKLSESKTYPG 65
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+ DRLDY++ M Y LAVE+L+GIE P R + IR + SE+ R+ SHLL + T A
Sbjct: 66 AMTLTDRLDYISSMTNNIGYCLAVERLMGIEPPPRAKFIRTMVSEMTRLSSHLLWLATHA 125
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+D+GA+T L+ F ERE+++ F+E+ G+R+ +Y R GGV DI ++++I + D
Sbjct: 126 LDIGAMTVFLYAFREREQILQFFEKICGARLTVSYPRIGGVRVDIKEHVLDEIYKFMDLM 185
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+++ LLT NRI+ R +G + EDA G +G +RGSG +D+RK PY+ Y
Sbjct: 186 LIRVDEYETLLTENRIWIARTRGVGVIAPEDAVLLGLTGPALRGSGVYYDIRKQIPYDAY 245
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
SE+DF++P+G+ GD YDRYL R+ EMR+SV I++QC+ ++ + S +P +
Sbjct: 246 SEIDFEVPLGEKGDTYDRYLCRIREMRQSVLIVKQCIEKMPEGKILSDKSPDID--LPHQ 303
Query: 301 RADMKRSMESLIHHFKLYTEG--YHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
+SL + F ++E +P GE+Y+A+EAPKGE G Y++SDG +PYR ++R
Sbjct: 304 AKRKIEPGDSLWNGFIAFSEEKQEIMPKGEIYSAIEAPKGELGFYIVSDGSGRPYRMRVR 363
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AP + H+ A+ LC+GH LADV AI+G+LDIV GE DR
Sbjct: 364 APSFIHISAIPKLCEGHLLADVIAIIGTLDIVMGEADR 401
>gi|224365620|ref|YP_002608348.1| NADH dehydrogenase subunit 7 [Vitis vinifera]
gi|209954144|emb|CAQ77574.1| NADH dehydrogenase subunit 7 [Vitis vinifera]
gi|239764745|gb|ACS15215.1| NADH dehydrogenase subunit 7 [Vitis vinifera]
Length = 394
Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats.
Identities = 228/392 (58%), Positives = 287/392 (73%), Gaps = 4/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ +FT N GPQHPAAHGV R +LE++GE+VER +PHIG LHRGTEKLIE KT+LQA+PY
Sbjct: 7 QITNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGSLHRGTEKLIEYKTYLQALPY 66
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR DYV+ M QEHA++ AVE+LL E+P+R Q IRVL+ EI RI +H L +TT AMDVG
Sbjct: 67 SDRSDYVSTMAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRISNHSLALTTHAMDVG 126
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A TP LW EEREKL+ FYER SG+RMHA++ RPGGV QD+P L DI F S +
Sbjct: 127 ASTPSLWASEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCRDIDSSTQQFASRI 186
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+++ ++ TGNRI+KQR V+IGTV + A WGFSGVM+RG G WD R++ PY+ + + D
Sbjct: 187 DELEEMSTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGPGVCWDSRRAAPYDVHDQSD 246
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
D+P+G GD YDRY +R+ EMR+SV+II QC N++ G + A D K+ PP R M
Sbjct: 247 PDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQCPNQM----PSGMIKADDRKLCPPSRCRM 302
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K SMES IHHF+ YTEG+ VP Y AVEAPKGEFGV+L+S+G N+PYR KIRAPG AH
Sbjct: 303 KLSMESSIHHFEPYTEGFSVPAPSTYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGSAH 362
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Q ++ + K H ADV I+G+ DIV GEVDR
Sbjct: 363 SQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 394
>gi|307822803|ref|ZP_07653034.1| NADH dehydrogenase I, D subunit [Methylobacter tundripaludum SV96]
gi|307736407|gb|EFO07253.1| NADH dehydrogenase I, D subunit [Methylobacter tundripaludum SV96]
Length = 592
Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats.
Identities = 165/393 (41%), Positives = 228/393 (58%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ S +N GP HP+ HGV R+ L+LDGE + P IG HRG EK+ E +++ +P
Sbjct: 204 EDSDFMFLNMGPNHPSVHGVFRIALQLDGEEIVDALPDIGYHHRGAEKMGERQSWHTYIP 263
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ Y LAVE+L GI++P R Q IRV+ E+ R+ SHLL T A D+
Sbjct: 264 YTDRVDYLGGSMNNLPYVLAVEQLAGIQVPERAQAIRVMICELYRLASHLLFYGTYAQDL 323
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G ++P + F +REK+ E SG+RMH++YFR GGV D+P + I + D P
Sbjct: 324 GQMSPIFYMFIDREKVFDILESISGARMHSSYFRIGGVAMDLPKGWDKRIREFIDYLPDR 383
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L+ L+ N K+R IG +A W +G +R +G AWD RK++PY Y
Sbjct: 384 LDQYDKLVLQNSTLKRRTQGIGAYTTAEAIDWSVTGAGLRATGLAWDYRKARPYSGYENY 443
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+F+IP G GDCYDR VR+ EMR+S++II+QC+ + GP AS P PP +
Sbjct: 444 EFEIPTGHRGDCYDRCTVRVEEMRQSLRIIKQCLENM----PEGPYKASHPLTTPPPKEK 499
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+E+LI HF + G +PVGE VEA KG YL SDGG YR +IR P +
Sbjct: 500 TLHDIETLIQHFLAVSWGPVIPVGESCVTVEATKGLNAYYLTSDGGGMSYRTRIRTPSFP 559
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ + +C+G +AD+ AIL S+D V +VDR
Sbjct: 560 HLQMIPMMCRGMMVADLIAILASIDFVMADVDR 592
>gi|298566721|gb|ADI86481.1| NADH-plastoquinone oxidoreductase subunit 7 [Duthiea brachypodium]
Length = 393
Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats.
Identities = 167/392 (42%), Positives = 225/392 (57%), Gaps = 5/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +PY
Sbjct: 7 RKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPY 66
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+G
Sbjct: 67 VTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADLG 126
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F +
Sbjct: 127 AQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRGV 186
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++ D
Sbjct: 187 VEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDPYESYNQFD 246
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + +
Sbjct: 247 WKVQWQKEGDSLARYLVRIGEMRESIKIIQQAVEKIPG----GPYENLEVRRFKKAKNSE 302
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+ +
Sbjct: 303 WNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFIN 361
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 362 LQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|86605457|ref|YP_474220.1| NAD(P)H-quinone oxidoreductase subunit H [Synechococcus sp.
JA-3-3Ab]
gi|123507315|sp|Q2JWB1|NDHH_SYNJA RecName: Full=NAD(P)H-quinone oxidoreductase subunit H; AltName:
Full=NAD(P)H dehydrogenase subunit H; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H;
AltName: Full=NDH-1 subunit H; Short=NDH-H
gi|86553999|gb|ABC98957.1| NADH-ubiquinone/plastoquinone oxidoreductase, H subunit
[Synechococcus sp. JA-3-3Ab]
Length = 394
Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats.
Identities = 162/397 (40%), Positives = 231/397 (58%), Gaps = 6/397 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + ++ +NFGP HP+ HGVLRL++ LDGE + +P IG LHRG EK+ E +T +Q
Sbjct: 3 MIETRTDRMLLNFGPHHPSMHGVLRLLVTLDGENIVDCEPVIGYLHRGMEKIAENRTVVQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY A M E AVEKL GI +P R +RV+ E+ RI +HLL
Sbjct: 63 YLPYVSRWDYGAGMFNEAITVNAVEKLAGIPVPRRASYLRVIMLELTRITNHLLWFGPFL 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSR-MHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
D+GA TP L+ ERE ++ +E +G R ++ YFR GGV D+P E +C+
Sbjct: 123 ADLGAQTPFLYAMREREWILDLFEAVTGMRLINNNYFRVGGVAVDLPYGWTEKCLDFCEY 182
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
F +++ L+T N IF++R IG + +DA WG SG M+R G WDLRK YEC
Sbjct: 183 FLPKVDEYERLVTDNPIFRRRLEGIGVISKQDAINWGLSGPMLRACGVNWDLRKVDHYEC 242
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + D+++ + GDC RY VRM EMRES KI++Q V L G +++
Sbjct: 243 YDDFDWEVAVYPEGDCLARYRVRMKEMRESCKIVQQAVKALPGGPFEN---LEAKRMLEG 299
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
+++ + I K + + +P GE Y VE+ KGE G+Y++ D P+R KIR
Sbjct: 300 PKSEWNKGDYQFIS--KKPSANFKIPKGEAYVRVESAKGELGIYIVGDDNVCPWRWKIRP 357
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
PG+ +LQ + L +G ++AD+ AILGS+DI+ GEVDR
Sbjct: 358 PGFVNLQVLPQLIRGMKVADMIAILGSIDIIMGEVDR 394
>gi|91200365|emb|CAJ73411.1| strongly similar to NADH dehydrogenase I chain C/D [Candidatus
Kuenenia stuttgartiensis]
Length = 581
Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats.
Identities = 165/395 (41%), Positives = 238/395 (60%), Gaps = 4/395 (1%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ + S +N GPQHP HGVLRL+L+LDGE + V P IG HRG EK+ E +++
Sbjct: 191 ESEDSDFMFLNIGPQHPGTHGVLRLVLQLDGEEILNVVPDIGFHHRGAEKMGERQSWHTY 250
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+PY DR+DY+A + AY LAVEKL GI++P R Q+IR++ E+ R+ SHL+ T A
Sbjct: 251 IPYTDRIDYLAGVMNNLAYLLAVEKLAGIKVPERAQVIRIMLCELFRLSSHLVWYGTFAQ 310
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D+G L+P + F +REK+ E G RMH +FR GGV D+P + + + FP
Sbjct: 311 DIGQLSPVFYMFSDREKVFEIIEAICGDRMHPNWFRIGGVTDDLPNGWDRLVKNFINYFP 370
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
L + ++ NRIFK R + IG E+A WG +G +R +G WD RK +PY Y
Sbjct: 371 KRLKEYDTMVMQNRIFKGRTIGIGIYNTEEAIEWGVTGPGLRATGFEWDFRKKRPYSGYD 430
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ +FDIP ++GDCYDR +VR+ EMR+S++II QCV + GP + P PP++
Sbjct: 431 QFEFDIPTAQNGDCYDRAIVRIEEMRQSIRIIEQCVKNM----PSGPYKSDHPLATPPRK 486
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+E+LI HF T G +P GE + +EA KG G YLISDG YR ++R P
Sbjct: 487 EKTMHDIETLITHFLGVTWGPVIPAGEAFFGIEATKGNNGYYLISDGNTSSYRTRVRTPS 546
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ H+Q + F+ + + + D+ +ILGS+D V ++DR
Sbjct: 547 FPHMQMVPFISRSYTVPDLLSILGSIDFVLADIDR 581
>gi|296169189|ref|ZP_06850842.1| NADH-quinone oxidoreductase subunit C/D [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295896087|gb|EFG75754.1| NADH-quinone oxidoreductase subunit C/D [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 445
Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats.
Identities = 179/413 (43%), Positives = 246/413 (59%), Gaps = 22/413 (5%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ +N GPQHP+ HGVLRLILE++GE V V IG LH G EK +E + + Q
Sbjct: 37 NADPGERIVVNMGPQHPSTHGVLRLILEIEGETVTEVRCGIGYLHTGIEKNLEYRYWTQG 96
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
V + R+DY++P E AY L VEKLLGI EIP R +IRV+ E+ RI SHL+ + T
Sbjct: 97 VTFVTRMDYLSPFFNETAYCLGVEKLLGITEEIPERVNVIRVMMMELNRISSHLVALATG 156
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
M++GA+TP GF RE ++ +E+ SG RM++AY RPGGV QD+PP D+
Sbjct: 157 GMELGAMTPMFVGFRGREIVLTLFEKISGLRMNSAYIRPGGVAQDLPPGAESDVAEALKP 216
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
L ++ DLL N I+K R ++G + L G +G ++R +G DLRKS+PY
Sbjct: 217 LRQVLREMGDLLNENAIWKARTQDVGYLDLTGCMALGITGPILRATGLPHDLRKSEPYCG 276
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y +FD+ D Y RY++R+ EM ES+KII QC+++L K GP+ D KI P
Sbjct: 277 YENYEFDVMTADTCDAYGRYMIRVNEMWESIKIIEQCLDKL----KPGPIMVEDRKIAWP 332
Query: 300 K----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVY 343
M SME+LIHHFKL TEG VP G+VY AVE+P+GE GV+
Sbjct: 333 ADLKVGPDGMGNSEEHIAKIMGSSMEALIHHFKLVTEGIRVPAGQVYTAVESPRGELGVH 392
Query: 344 LISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++SDGG +PYR R P + +LQ++ +C+G +AD+ + S+D V G VDR
Sbjct: 393 MVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLITAVASIDPVMGGVDR 445
>gi|298566691|gb|ADI86466.1| NADH-plastoquinone oxidoreductase subunit 7 [Phyllostachys sp.
JID-2010]
gi|298566693|gb|ADI86467.1| NADH-plastoquinone oxidoreductase subunit 7 [Pseudosasa japonica]
Length = 393
Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats.
Identities = 168/393 (42%), Positives = 225/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P V+ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWVDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N +F +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITRNPVFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVRM EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRMGEMRESIKIIQQAVEKIPG----GPYENLEVRRFKKTKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|298566713|gb|ADI86477.1| NADH-plastoquinone oxidoreductase subunit 7 [Nardus stricta]
Length = 393
Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats.
Identities = 167/393 (42%), Positives = 225/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLQE 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ I K GD RYLVR+ EMRES++II+Q V ++ G GP + + +
Sbjct: 246 DWKIQWQKEGDSLARYLVRIGEMRESIRIIQQAVEKIPG----GPYENLEVRRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWDDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|298566651|gb|ADI86446.1| NADH-plastoquinone oxidoreductase subunit 7 [Panicum virgatum]
Length = 393
Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats.
Identities = 166/393 (42%), Positives = 224/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GG D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGXAADLPYGWMDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITRNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGTQWDLRKIDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRIGEMRESIKIIQQAVEKIPG----GPYENLEARRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|160688745|gb|ABX45161.1| NADH dehydrogenase subunit 7 [Polysphondylium pallidum]
Length = 406
Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats.
Identities = 228/397 (57%), Positives = 296/397 (74%), Gaps = 10/397 (2%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
++FT+NFGPQHPAAHGVLRLI+ELD E V+R+DPHIGLLHRGTEKLIE KT+ QA+PYF
Sbjct: 14 IKNFTLNFGPQHPAAHGVLRLIVELDSETVKRIDPHIGLLHRGTEKLIEYKTYTQALPYF 73
Query: 66 DRLDYVAPMNQEHAYALAVEKLL------GIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
DRLDYV+ QEHAY+LAVE+L +EIP+R ++IR+L+SEI R+L+H+L TT
Sbjct: 74 DRLDYVSMQVQEHAYSLAVERLYLQSYDIELEIPVRAKVIRILFSEITRVLNHILATTTH 133
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
AMDVGALTP LW FEEREKLM FYER SG+RMH+AY RPGGV D+P L EDI +C
Sbjct: 134 AMDVGALTPFLWAFEEREKLMEFYERVSGARMHSAYIRPGGVAFDLPLNLSEDIYTFCQQ 193
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ L +I D+L NRI+KQR V+IGTV +ED+ GF+GVM+RGSG +D+RK+ PY+
Sbjct: 194 YRKRLEEIEDMLINNRIWKQRLVDIGTVSMEDSQNAGFTGVMLRGSGVIYDIRKNYPYDD 253
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + +F+I +G+ + Y R+++R+ EM +S+ II Q +N L K G + +V P
Sbjct: 254 YDKYNFNIIVGEDNNSYTRFILRIKEMYQSLIIIEQALNNL----KPGLIKIEGLNLVAP 309
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
RA +K+ MES I+HFK ++EGY +P E+Y VEAPKGEFGVYL S+ KPYRC+I+A
Sbjct: 310 DRAFVKKDMESCINHFKYFSEGYIIPSNEIYTIVEAPKGEFGVYLKSNNTAKPYRCRIKA 369
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
PG+ HLQ + + K H LADV ++G+ DIVFGEVDR
Sbjct: 370 PGFLHLQGLNMMGKDHLLADVVTLIGTQDIVFGEVDR 406
>gi|11466758|ref|NP_039354.1| NADH dehydrogenase subunit 7 [Marchantia polymorpha]
gi|128834|sp|P12131|NDHH_MARPO RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|11729|emb|CAA28140.1| unnamed protein product [Marchantia polymorpha]
Length = 392
Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats.
Identities = 173/393 (44%), Positives = 231/393 (58%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K++ ++ GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 5 TKNKPMIVSMGPHHPSMHGVLRLIVTLDGEDVLDCEPVLGYLHRGMEKIAENRTIVQYLP 64
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A EKL I++P R IR++ E+ RI SHLL + D+
Sbjct: 65 YVTRWDYLATMFTEAITVNAPEKLTNIQVPKRASYIRIIMLELSRIASHLLWLGPFMADI 124
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 125 GAQTPFFYIFREREMIYDLFESATGMRMMHNYFRIGGVAVDLPYGWIDKCLDFCDYFLPK 184
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+N+ L+T N IF +R IGTV E+A WG SG M+R SG WDLRK YECY EL
Sbjct: 185 INEYERLITNNPIFLKRVEGIGTVTREEAINWGLSGPMLRASGVQWDLRKVDHYECYDEL 244
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ I K GD RYLVR+ EM+ESVKII+Q + + G GP + + + +
Sbjct: 245 DWKIQWQKEGDSLARYLVRIGEMKESVKIIQQALKAIPG----GPFENLEARRLNQGKNS 300
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + +P E Y VEAPKGE G++LI D P+R KIR+PG+
Sbjct: 301 EWNLFE-YQFISKKPSPTFKLPKQEHYVRVEAPKGELGIFLIGDDSVFPWRLKIRSPGFI 359
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L KG +LAD+ ILGS+DI+ GEVDR
Sbjct: 360 NLQILPQLVKGMKLADIMTILGSIDIIMGEVDR 392
>gi|57234304|ref|YP_181651.1| proton-translocating NADH-quinone oxidoreductase, D subunit
[Dehalococcoides ethenogenes 195]
gi|123618654|sp|Q3Z7Z8|NUOD_DEHE1 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|57224752|gb|AAW39809.1| proton-translocating NADH-quinone oxidoreductase, D subunit
[Dehalococcoides ethenogenes 195]
Length = 367
Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats.
Identities = 167/393 (42%), Positives = 236/393 (60%), Gaps = 30/393 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K+ SF +N GPQHP+ HGV RL L LDGE++ ++P G LHRG EKL E +T+LQ +P+
Sbjct: 4 KTESFILNIGPQHPSTHGVFRLRLILDGEVITDLEPVFGYLHRGIEKLAEGRTYLQDIPF 63
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDY+ M HAY +AVEKL GI +P R + IRV+ E+ RI SHL + D+G
Sbjct: 64 TDRLDYLGSMTNNHAYVMAVEKLAGITVPERAEYIRVILDELQRIASHLAGLGFFLNDLG 123
Query: 125 AL-TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
AL TP L+ F EREK++ ++ SG R++ Y+R GG QD+P E + + D+ P
Sbjct: 124 ALQTPLLYMFREREKIVELFDMCSGQRLNYNYYRFGGFVQDLPEEFLPALKKLLDTLPGF 183
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ L++ N I R +G +K E A +G ++R SG WD+R++ PY Y
Sbjct: 184 IDEYEQLISTNEIVLIRTKGVGVLKRELAINSSAAGPVLRASGVNWDIRRNDPYSIYDRF 243
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FDIP ++GD YDRY+VR+ EMR+SV+I+RQ V L G + PK++
Sbjct: 244 EFDIPTAQNGDTYDRYMVRIREMRQSVRILRQAVKDL----PEGEIMGKAPKLL------ 293
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
P GEVY+ +E PKGE G YL+SDG +KPYR ++R P
Sbjct: 294 -------------------KPPAGEVYSRIEGPKGELGFYLVSDGTDKPYRWRVRPPCLL 334
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L A++ + G ++AD+ AI GS+DIV GEVDR
Sbjct: 335 NLSALKDMVVGWKVADLMAIFGSIDIVMGEVDR 367
>gi|298566685|gb|ADI86463.1| NADH-plastoquinone oxidoreductase subunit 7 [Ehrharta calycina]
Length = 393
Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats.
Identities = 164/393 (41%), Positives = 225/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLQG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIEWDLRKVDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EM+ES+KII+Q + ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRISEMKESIKIIQQAIEKIPG----GPYENLEVRRFKKAKNA 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L + +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVQKMKLADIMTILGSIDIIMGEVDR 393
>gi|298566769|gb|ADI86505.1| NADH-plastoquinone oxidoreductase subunit 7 [Avena sativa]
Length = 393
Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats.
Identities = 167/393 (42%), Positives = 226/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G ++ E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITQNPIFLERVEGVGFIRGEEAVNWGLSGPMLRASGIQWDLRKVDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRVSEMRESIKIIQQAVEKIPG----GPYENLEVRRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|298566751|gb|ADI86496.1| NADH-plastoquinone oxidoreductase subunit 7 [Pleuropogon refractus]
Length = 393
Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats.
Identities = 168/393 (42%), Positives = 225/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E ++ +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRSIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + EDA WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITQNPIFLERVEGVGFISGEDAVNWGLSGPMLRASGVQWDLRKVDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKVRWQKEGDSLARYLVRVGEMRESIKIIQQAVEKIPG----GPYENLEVRRFNKSKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YLI D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLIGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|296274500|ref|YP_003657131.1| NADH dehydrogenase I subunit D [Arcobacter nitrofigilis DSM 7299]
gi|296098674|gb|ADG94624.1| NADH dehydrogenase I, D subunit [Arcobacter nitrofigilis DSM 7299]
Length = 408
Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats.
Identities = 174/394 (44%), Positives = 243/394 (61%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ + +NFGPQHP+AHG +RLILEL GE + + PHIG LHRG EK+ E + + +
Sbjct: 17 EREDNTMVVNFGPQHPSAHGQMRLILELQGEEIVKSRPHIGYLHRGMEKMGENMIYNEFL 76
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DR+DY+A + + YALAVEKLLGIE P R ++IR + E+ RI+SHL + T A+D
Sbjct: 77 PTTDRMDYIAATSNNYGYALAVEKLLGIEAPRRAEIIRTMLIELNRIISHLFWLATHALD 136
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA++ L+ F ERE + E G+R+ + R GGV D+P ED+ + D
Sbjct: 137 VGAMSVFLYAFREREFALDLIEDYCGARLTHSAVRIGGVPLDLPDNWCEDLEKYLDILAI 196
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ LLT NRI++ R N+G + E A WG +G ++R +G WDLRK PY Y E
Sbjct: 197 EIPKYEGLLTDNRIWRMRLENVGVIDNETAKSWGCTGPILRATGQKWDLRKEMPYGIYPE 256
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LDFD+PI GD + RY V M EMRES KI+RQ V + A++P+ + +
Sbjct: 257 LDFDVPIATAGDSFARYQVHMQEMRESSKILRQLVPMYKASPSQ--LMANEPQYISATKE 314
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
D+ +L+ HF L T+G P GEVY A E+PKGE G ++SDG Y+ K+RAP +
Sbjct: 315 DIMTQNYALMQHFVLVTQGMRPPRGEVYVATESPKGELGFMIVSDGSPYAYKMKLRAPSF 374
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H +E + GHQLADV I+G+L++VFGE+DR
Sbjct: 375 WHTSILEEVLVGHQLADVVTIIGNLNVVFGEIDR 408
>gi|34556900|ref|NP_906715.1| NADH dehydrogenase subunit D [Wolinella succinogenes DSM 1740]
gi|81653580|sp|Q7MA48|NUOD_WOLSU RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|34482615|emb|CAE09615.1| NADH OXIDOREDUCTASE I [Wolinella succinogenes]
Length = 408
Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats.
Identities = 178/394 (45%), Positives = 244/394 (61%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++ INFGPQHP+AHG LRLILEL+GE V R P +G LHRG EK+ E + + +
Sbjct: 17 ERHDNQMVINFGPQHPSAHGQLRLILELEGEKVTRAVPDVGYLHRGMEKMGENMIYNEFI 76
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DR+DY+A + HA+AL VEKLLGIE+P R ++IR++ E+ RI+SHL + T A+D
Sbjct: 77 PTTDRMDYIAASSNNHAFALTVEKLLGIEVPRRAKVIRMMIVELNRIISHLFWLATHALD 136
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA++ L+ F ERE M E G+R+ + R GGV D+P +E + + + P
Sbjct: 137 VGAMSIFLYCFREREFAMDLMEDYCGARLTHSSIRIGGVPLDLPAGWLEKLKSFLEKMPE 196
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ LL+ NRI+K R N+G + E A WG SGV +RGSG WDLRK QPYE Y E
Sbjct: 197 NIALYEGLLSENRIWKMRLENVGIITPEMAKSWGCSGVALRGSGIQWDLRKEQPYELYDE 256
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++FDIP+ GD Y RY + M EMR++VKI+ Q + + A P+ + +
Sbjct: 257 VEFDIPVSDSGDSYGRYKLYMEEMRQTVKILHQLIEMYPST--SSEIMAHAPQYISAPKE 314
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ SL+ HF L T+G PVGEVY A E+PKGE G ++ S+G PYR KIRAP +
Sbjct: 315 QIMTQNYSLMQHFVLVTQGMRPPVGEVYCATESPKGELGFFIRSEGEPYPYRLKIRAPSF 374
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H ++ L G +ADV I+G+L+IVFGE+DR
Sbjct: 375 YHTGILQDLLPGGYIADVVTIIGNLNIVFGEIDR 408
>gi|298566731|gb|ADI86486.1| NADH-plastoquinone oxidoreductase subunit 7 [Nassella pulchra]
Length = 393
Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats.
Identities = 166/393 (42%), Positives = 224/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYXLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITENPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRVGEMRESIKIIQQAVEKIPG----GPYENLEVRRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFQLSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|145225063|ref|YP_001135741.1| NADH dehydrogenase subunit D [Mycobacterium gilvum PYR-GCK]
gi|218534423|sp|A4TDA8|NUOD_MYCGI RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|145217549|gb|ABP46953.1| NADH dehydrogenase subunit D [Mycobacterium gilvum PYR-GCK]
Length = 451
Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats.
Identities = 178/412 (43%), Positives = 243/412 (58%), Gaps = 19/412 (4%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GPQHP+ HGVLRLILE++GE + IG LH G EK +E +T+ Q V
Sbjct: 41 EHAGERIVVNMGPQHPSTHGVLRLILEIEGETIVEARCGIGYLHTGIEKNLEFRTWTQGV 100
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R+DY++P E AY L VEKLLG+ +IP R +IRV+ E+ RI SHL+ + T
Sbjct: 101 TFVTRMDYLSPFFNETAYCLGVEKLLGVTDDIPERASVIRVMMMELNRISSHLVALATGG 160
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
M++GA+T GF ERE ++ +E +G RM++AY RPGGV D+P E + I
Sbjct: 161 MELGAMTAMFLGFRERELILSVFETITGLRMNSAYIRPGGVAADLPEEGLPQIRELLTLL 220
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P+ L D+ +LL N I+K R + +G + L G +G ++R +G DLRKSQPY Y
Sbjct: 221 PTRLRDMENLLNENYIWKARTLGVGYLDLTGCMALGITGPVLRSTGLPHDLRKSQPYCGY 280
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
DFD+ D Y RYL+R+ EMRES++I+ QCV RL PV +D K+ P
Sbjct: 281 QTYDFDVITDDRCDSYGRYLIRVKEMRESLRIVEQCVERLERSTGE-PVMITDRKLAWPA 339
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
M SME LIHHFKL TEG VP G+VY AVE+P+GE GV++
Sbjct: 340 DLKVGPDGLGNSPEHIAKIMGHSMEGLIHHFKLVTEGIRVPPGQVYVAVESPRGELGVHM 399
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +PYR R P + +LQA+ +C+G +AD + S+D V G VDR
Sbjct: 400 VSDGGTRPYRVHYRDPSFTNLQAVAAMCEGGMVADAITAVASIDPVMGGVDR 451
>gi|108798547|ref|YP_638744.1| NADH dehydrogenase subunit D [Mycobacterium sp. MCS]
gi|119867647|ref|YP_937599.1| NADH dehydrogenase subunit D [Mycobacterium sp. KMS]
gi|126434145|ref|YP_001069836.1| NADH dehydrogenase subunit D [Mycobacterium sp. JLS]
gi|123369542|sp|Q1BBP6|NUOD_MYCSS RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|218534426|sp|A3PWR8|NUOD_MYCSJ RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|218534427|sp|A1UDA1|NUOD_MYCSK RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|108768966|gb|ABG07688.1| NADH dehydrogenase subunit D [Mycobacterium sp. MCS]
gi|119693736|gb|ABL90809.1| NADH dehydrogenase subunit D [Mycobacterium sp. KMS]
gi|126233945|gb|ABN97345.1| NADH dehydrogenase subunit D [Mycobacterium sp. JLS]
Length = 446
Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats.
Identities = 176/409 (43%), Positives = 245/409 (59%), Gaps = 22/409 (5%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+N GPQHP+ HGVLRLILE++GE + IG LH G EK +E + + Q V +
Sbjct: 42 GERIVVNMGPQHPSTHGVLRLILEIEGETITEARCGIGYLHTGIEKNLEYRNWTQGVTFV 101
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
R+DY++P E AY L VEKLLG+ IP R +IRV+ E+ RI SHL+ + T M++
Sbjct: 102 TRMDYLSPFFNETAYCLGVEKLLGVTDAIPERVNVIRVMLMELNRISSHLVALATGGMEL 161
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA++ +GF ERE+++ +E +G RM+ AY RPGG+ D+P V I P
Sbjct: 162 GAMSAMFYGFREREEILSVFEMITGLRMNHAYIRPGGLAADLPDGAVPRIRELLALLPGR 221
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L D+ +LL N I+K R IG + L G +G ++R +G DLR++QPY Y +
Sbjct: 222 LRDLENLLNENYIWKARTQGIGYLDLAGCMALGITGPVLRSTGLPHDLRRAQPYCGYEDY 281
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FD+ D Y RYL+R+ EMRES+KI+ QCV+RL K GPV +D K+ P +
Sbjct: 282 EFDVITDDGCDAYGRYLIRVKEMRESLKIVEQCVDRL----KPGPVMIADKKLAWPADLE 337
Query: 304 ----------------MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISD 347
M +SME LIHHFKL TEG VP G+VY AVE+P+GE GV+++SD
Sbjct: 338 LGPDGLGNSPAHIARIMGQSMEGLIHHFKLVTEGIRVPAGQVYTAVESPRGELGVHMVSD 397
Query: 348 GGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GG +PYR R P + +LQA+ +C+G +AD + + S+D V G VDR
Sbjct: 398 GGTRPYRVHYRDPSFTNLQAVAAMCEGGMVADAISAVASIDPVMGGVDR 446
>gi|41409302|ref|NP_962138.1| NADH dehydrogenase subunit D [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|118466708|ref|YP_883188.1| NADH dehydrogenase subunit D [Mycobacterium avium 104]
gi|254776458|ref|ZP_05217974.1| NADH dehydrogenase subunit D [Mycobacterium avium subsp. avium ATCC
25291]
gi|81700408|sp|Q73V12|NUOD_MYCPA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|218534420|sp|A0QJV0|NUOD_MYCA1 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|41398122|gb|AAS05752.1| NuoD [Mycobacterium avium subsp. paratuberculosis K-10]
gi|118167995|gb|ABK68892.1| NADH dehydrogenase i, d subunit [Mycobacterium avium 104]
Length = 441
Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats.
Identities = 175/409 (42%), Positives = 243/409 (59%), Gaps = 22/409 (5%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+N GPQHP+ HGVLRLILE++GE V IG LH G EK +E + + Q V +
Sbjct: 37 GERIVVNMGPQHPSTHGVLRLILEIEGETVTEARCGIGYLHTGIEKNLEYRYWTQGVTFV 96
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
R+DY++P E AY L VEKLLGI IP R +IRV+ E+ RI SHL+ + T M++
Sbjct: 97 TRMDYLSPFFNETAYCLGVEKLLGITDQIPERVNVIRVMMMELNRISSHLVALATGGMEL 156
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+TP GF RE ++ +E +G RM++AY RPGGV QD+PP +I D
Sbjct: 157 GAMTPMFVGFRGREIVLTLFESITGLRMNSAYIRPGGVAQDLPPNAKTEIAQALDQLRQP 216
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L ++ DLL N I+K R +IG + L G +G ++R +G DLRKS+PY Y
Sbjct: 217 LREMGDLLNENAIWKARTQDIGYLDLTGCMALGITGPILRATGLPHDLRKSEPYCGYENY 276
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK--- 300
+FD+ D Y RY++R+ EM ES+KI+ QC+++L + GP+ + KI P
Sbjct: 277 EFDVITADTCDAYGRYMIRVKEMWESIKIVEQCLDKL----QPGPIMVENGKIAWPADLK 332
Query: 301 -------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISD 347
M SME+LIHHFKL TEG VP G+VY AVE+P+GE GV+++SD
Sbjct: 333 VGPDGLGNSPEHIAKIMGGSMEALIHHFKLVTEGIRVPPGQVYTAVESPRGELGVHMVSD 392
Query: 348 GGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GG +PYR R P + +LQ++ +C+G +AD+ + S+D V G VDR
Sbjct: 393 GGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLITAVASIDPVMGGVDR 441
>gi|223931104|ref|YP_002586966.1| NADH-plastoquinone oxidoreductase subunit 7 [Syntrichia ruralis]
gi|219562318|gb|ACL27649.1| NADH-plastoquinone oxidoreductase subunit 7 [Syntrichia ruralis]
Length = 391
Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats.
Identities = 168/396 (42%), Positives = 231/396 (58%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M K++ ++ GP HP+ HGVLRL++ LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 1 MLATKTKPMIVSMGPHHPSMHGVLRLMVSLDGENVIDCEPILGYLHRGMEKIAENRTIVQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E A EKL I++P R IR++ E+ R+ SHLL +
Sbjct: 61 YLPYVTRWDYLATMFTEAITVNAPEKLTNIQVPKRASYIRIIMLELSRVASHLLWLGPFM 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 121 ADIGAQTPFFYILREREMIYDLFEAATGMRMMHNYFRIGGVAVDLPYGWIDKCLDFCDYF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+++ L+T N IF +R IG ++ E+A WG SG M+R SG WDLRK YECY
Sbjct: 181 LPKVDEYEKLITQNPIFLKRVEGIGIIEREEAINWGLSGPMLRASGVQWDLRKVDHYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
ELD+ I K GD RYLVR+ EM+ES+KII+Q + + G GP + + +
Sbjct: 241 DELDWQIQWQKEGDSLARYLVRIGEMKESIKIIQQALKSIPG----GPYENLEARRFQRE 296
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ + E K + + +P E Y VEAPKGE GV+LI D P+R KIR P
Sbjct: 297 KKSEWNNFE-YQFISKKPSPTFKLPKQEHYIRVEAPKGELGVFLIGDDSVFPWRWKIRPP 355
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L KG +LAD+ ILGS+DI+ GEVDR
Sbjct: 356 GFVNLQILPQLVKGMKLADIMTILGSIDIIMGEVDR 391
>gi|298566711|gb|ADI86476.1| NADH-plastoquinone oxidoreductase subunit 7 [Lygeum spartum]
Length = 393
Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats.
Identities = 168/393 (42%), Positives = 225/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPELLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ I K GD RYLVR+ EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKIQWQKEGDSLARYLVRICEMRESIKIIQQAVEKIPG----GPYENLEVRRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|298566765|gb|ADI86503.1| NADH-plastoquinone oxidoreductase subunit 7 [Bromus suksdorfii]
Length = 393
Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats.
Identities = 167/393 (42%), Positives = 226/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLGG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + ++
Sbjct: 246 DWKVQWQKEGDSLARYLVRVGEMRESIKIIQQAVEKIPG----GPYENLEVRRFKKEKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YKFLGKKPSPNFELSRQELYVRVEAPKGELGIYLVGDDNLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|118430443|ref|YP_874708.1| NADH-plastoquinone oxidoreductase subunit 7 [Hordeum vulgare subsp.
vulgare]
gi|6647614|sp|O98691|NDHH_HORVU RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|4150868|emb|CAA09811.1| ndhH protein [Hordeum vulgare subsp. vulgare]
gi|118201097|gb|ABK79468.1| NADH-plastoquinone oxidoreductase subunit 7 [Hordeum vulgare subsp.
vulgare]
Length = 393
Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats.
Identities = 166/393 (42%), Positives = 225/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TKKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EM ES+KII+Q + ++ G GP + + ++
Sbjct: 246 DWKVQWQKEGDSLARYLVRVGEMSESIKIIQQAIEKIPG----GPYENLEVRRFKKEKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YKFLGKKPSPNFELSRQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|298566679|gb|ADI86460.1| NADH-plastoquinone oxidoreductase subunit 7 [Molinia caerulea]
Length = 393
Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats.
Identities = 165/393 (41%), Positives = 224/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWMDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYEQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKIDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q + ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRIGEMRESIKIIQQAIEKIPG----GPYENLEARRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|298566759|gb|ADI86500.1| NADH-plastoquinone oxidoreductase subunit 7 [Littledalea tibetica]
Length = 393
Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats.
Identities = 167/393 (42%), Positives = 226/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGSMLRASGIQWDLRKVDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + ++
Sbjct: 246 DWKVQWQKEGDSLARYLVRVGEMRESIKIIQQAVEKIPG----GPYENLEVRRFKKEKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YKFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|298566761|gb|ADI86501.1| NADH-plastoquinone oxidoreductase subunit 7 [Elymus trachycaulus]
Length = 393
Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats.
Identities = 167/393 (42%), Positives = 226/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + ++
Sbjct: 246 DWKVQWQKEGDSLARYLVRVGEMRESIKIIQQAVEKIPG----GPYENLEVRRFKKEKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YKFLGKKPSPNFELSRQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|298566763|gb|ADI86502.1| NADH-plastoquinone oxidoreductase subunit 7 [Bromus inermis]
gi|298566767|gb|ADI86504.1| NADH-plastoquinone oxidoreductase subunit 7 [Bromus korotkiji]
Length = 393
Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats.
Identities = 167/393 (42%), Positives = 226/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLGG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + ++
Sbjct: 246 DWKVQWQKEGDSLARYLVRVGEMRESIKIIQQAVEKIPG----GPYENLEVRRFKKEKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YKFLGKKPSPNFELSRQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|298566707|gb|ADI86474.1| NADH-plastoquinone oxidoreductase subunit 7 [Olyra latifolia]
Length = 393
Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats.
Identities = 166/393 (42%), Positives = 224/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQVPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P V+ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWVDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N +F +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITQNPVFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVRM EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRMGEMRESIKIIQQAVEKIPG----GPYENLEVRRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDNSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|298566655|gb|ADI86448.1| NADH-plastoquinone oxidoreductase subunit 7 [Sporobolus giganteus]
Length = 393
Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats.
Identities = 165/393 (41%), Positives = 224/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWMDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITRNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKIDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EM+ESVKII+Q + ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRIGEMKESVKIIQQAIEKIPG----GPYENLEARRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|224178047|ref|YP_002600964.1| 49 kDa subunit of NADH-plastoquinone oxidoreductase [Pyramimonas
parkeae]
gi|215882714|gb|ACJ71087.1| 49 kDa subunit of NADH-plastoquinone oxidoreductase [Pyramimonas
parkeae]
Length = 391
Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats.
Identities = 182/396 (45%), Positives = 235/396 (59%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + K+ ++ GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 1 MLETKTDPMVVSMGPHHPSMHGVLRLIVTLDGENVIDCEPVLGYLHRGMEKIAENRTIVQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E A EKL IEIP R IRV+ E+ RI SHLL +
Sbjct: 61 YLPYVTRWDYLATMFTEAITVNAPEKLANIEIPKRASYIRVICLELSRIASHLLWLGPFM 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE + +E A+G RM YFR GGV D+P VE +C F
Sbjct: 121 ADIGAQTPFFYIFREREMVYDLFEAATGMRMMHNYFRVGGVAADLPYGWVEKTFQFCAYF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+++ L+T N IF +R NIGT+ E+A WG SG M+RGSG AWDLRK YECY
Sbjct: 181 EKKVDEYEQLITRNPIFLKRVKNIGTITKEEAINWGLSGPMLRGSGIAWDLRKLDQYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+ELD+ I GDC RYLVR+ EMRES+KII+Q + + G GP + + +
Sbjct: 241 NELDWSIAYETGGDCLARYLVRITEMRESIKIIKQALQMIPG----GPYENLEARRLYYG 296
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R E + K + +P E Y VEAPKGE GVYLI DG P+R KIRAP
Sbjct: 297 RKSNWNDFE-YQYIGKKASPTIKIPKDEHYVRVEAPKGELGVYLIGDGNLFPWRFKIRAP 355
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L +G +LAD+ ILGS+DI+ GE DR
Sbjct: 356 GFINLQILPNLVQGMKLADIMTILGSVDIIMGECDR 391
>gi|94968317|ref|YP_590365.1| NADH dehydrogenase I, D subunit [Candidatus Koribacter versatilis
Ellin345]
gi|229891258|sp|Q1IS59|NUOD1_ACIBL RecName: Full=NADH-quinone oxidoreductase subunit D 1; AltName:
Full=NADH dehydrogenase I subunit D 1; AltName:
Full=NDH-1 subunit D 1
gi|94550367|gb|ABF40291.1| NADH dehydrogenase subunit D [Candidatus Koribacter versatilis
Ellin345]
Length = 381
Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats.
Identities = 163/392 (41%), Positives = 244/392 (62%), Gaps = 29/392 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
S +N GPQHP+ HGVLR+IL+LDGE V + IG LHRG EK+ E +T++Q PY
Sbjct: 19 DSNELVLNMGPQHPSTHGVLRVILKLDGERVLGTECVIGYLHRGVEKIAENRTYVQFNPY 78
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DYVA ++ Y AVEKL+ ++ P R Q +RV+ +E+ R+ SH++ + T A+D+G
Sbjct: 79 VDRMDYVAAVSNGLGYCEAVEKLIDVQAPPRAQFLRVILTELNRLASHMVWLGTHALDIG 138
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
ALTP + F +RE+++ +E+ G+R+ FR GG + +D+ +CD +
Sbjct: 139 ALTPLFYTFRDREEVLKIFEKYCGARLTTHAFRIGGCIYEAYEGFEKDVLDYCDKLGPRI 198
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
++ LLTGNRI+ QR IG + D G +G ++R +G WDLRK+QPY Y ++D
Sbjct: 199 DEYEGLLTGNRIWLQRTKGIGILNAADCKALGVTGPVLRAAGVKWDLRKAQPYAAYDQVD 258
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FD+P G++GD +DRY+VRM EMR+S++I+RQ V +L GP A PK++
Sbjct: 259 FDVPTGENGDTFDRYMVRMQEMRQSIRILRQAVEKLPA----GPTMAKVPKVL------- 307
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
PVG +Y ++EAPKGE G +++SDG +PYR ++R P + +
Sbjct: 308 ------------------KPPVGRIYHSIEAPKGELGYFIVSDGSLQPYRVRVRPPSFVN 349
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
LQA++ + +G +ADV A++G+LDIV GEVDR
Sbjct: 350 LQALDKMVRGALIADVVAVIGTLDIVLGEVDR 381
>gi|298566665|gb|ADI86453.1| NADH-plastoquinone oxidoreductase subunit 7 [Zoysia sp. JID-2004]
Length = 393
Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats.
Identities = 165/393 (41%), Positives = 224/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWMDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITRNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKIDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EM+ES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRIGEMKESIKIIQQAVEKIPG----GPYENLEARRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|268317703|ref|YP_003291422.1| NADH dehydrogenase I, D subunit [Rhodothermus marinus DSM 4252]
gi|66219965|gb|AAY42998.1| Nqo4 [Rhodothermus marinus]
gi|262335237|gb|ACY49034.1| NADH dehydrogenase I, D subunit [Rhodothermus marinus DSM 4252]
Length = 441
Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats.
Identities = 165/389 (42%), Positives = 243/389 (62%), Gaps = 5/389 (1%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
+N GPQHPA HGVLR I++LDGE++E+ +G LHRG EK+ E KT+ + +PY DR
Sbjct: 56 EMILNIGPQHPATHGVLRCIVKLDGEVMEKCVLDLGYLHRGLEKVAEHKTYQEFMPYTDR 115
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+DY++P + A+ LAVEK+ GIE+P R Q IR++ E+ RI SHLL + MD GA++
Sbjct: 116 MDYLSPYSNNVAWCLAVEKVAGIEVPERAQWIRMIMCELARISSHLLWLGVGLMDAGAVS 175
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
LW F+ RE++ ++ G+R ++ R GGV D+ P + I + + FP L
Sbjct: 176 VFLWAFKYREEIYSIFDEVCGARFTVSHSRIGGVASDLSPTAIAMIRRFVEEFPEELAGW 235
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
++ N+I+ RN IG + E+A G +G +RGSG +D+R+ +PY Y E+DF+I
Sbjct: 236 EKIINRNKIWIDRNEGIGVLTAEEAIELGVTGPNLRGSGVDYDIRRFEPYLKYDEVDFNI 295
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
PI GD RY VRM EM+ESV+IIRQC+ RL GP+ + K+ P + ++ S
Sbjct: 296 PIRTEGDSLARYFVRMEEMKESVRIIRQCLERL----PEGPIRNDNAKLAYPSKEEVYYS 351
Query: 308 MESLIHHFKLYTEGYHVPVGEV-YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
ME +IH F G P G Y A+EAPKGE G Y+ISDG KP+R +I+AP +++LQ
Sbjct: 352 MEGMIHDFLYTDVGVCPPKGAHSYHAIEAPKGELGFYIISDGTGKPWRVRIKAPSFSNLQ 411
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+E++ +G + D+ ++G++D V GE D
Sbjct: 412 GLEYMMEGAMIGDMVILIGTIDPVMGEAD 440
>gi|124302962|ref|YP_001023757.1| NADH dehydrogenase subunit 7 [Angiopteris evecta]
gi|218527814|sp|A2T389|NDHH_ANGEV RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|110628360|gb|ABG79656.1| NADH-plastoquinone oxidoreductase subunit 7 [Angiopteris evecta]
Length = 393
Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats.
Identities = 171/396 (43%), Positives = 228/396 (57%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M K ++ GPQHP+ HGVLRLI+ DGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 MLATKKDPMIVSMGPQHPSMHGVLRLIVTSDGENVIDCEPILGYLHRGMEKIAENRTIIQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E A EKL I+IP R IR++ E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEAITVNAPEKLANIQIPKRASYIRIIMLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
DVGA TP + F ERE + +E A+G RM YFR GGV D P V+ +CD F
Sbjct: 123 ADVGAQTPFFYIFREREMIYDLFEAATGMRMMHNYFRIGGVAVDFPYGWVDKCLDFCDYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+++ L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY
Sbjct: 183 LPKVDEYEQLITNNPIFLKRVEGVGFIGREEAINWGLSGPMLRASGVRWDLRKVDHYECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
ELD+ I K GD RYLVR+ EMRESV+II+Q + + G GP + + + +
Sbjct: 243 DELDWQIQWQKEGDSLARYLVRIGEMRESVRIIQQALKVIPG----GPYENLEARRLNQQ 298
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ + K + + +P E Y +EAPKGE G++LI D P+R KIR P
Sbjct: 299 KDSEWNDFD-YQFISKKSSPTFKLPKQEHYVRIEAPKGELGIFLIGDDNVSPWRWKIRPP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L KG +LAD+ ILGS+DI+ GEVDR
Sbjct: 358 GFINLQILPQLVKGMKLADIMTILGSIDIIMGEVDR 393
>gi|14017629|ref|NP_114314.1| NADH dehydrogenase subunit 7 [Triticum aestivum]
gi|23821898|sp|Q95H42|NDHH_WHEAT RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|13928262|dbj|BAB47091.1| NADH dehydrogenase 49kDa subunit [Triticum aestivum]
Length = 393
Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats.
Identities = 168/393 (42%), Positives = 226/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P +E +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIEKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + ++
Sbjct: 246 DWKVQWQKEGDSLARYLVRVGEMRESIKIIQQAVEKIPG----GPYENLEVRRFKKEKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YKFLGKKPSPNFELSRQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|149909802|ref|ZP_01898453.1| NuoD2 NADH I CHAIN D [Moritella sp. PE36]
gi|149807134|gb|EDM67090.1| NuoD2 NADH I CHAIN D [Moritella sp. PE36]
Length = 405
Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats.
Identities = 199/392 (50%), Positives = 258/392 (65%), Gaps = 6/392 (1%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
SR +N GPQHP+ HGVLRL+L++DGEIV+R++PHIGLLHRGTEKL E+ T+ Q P
Sbjct: 17 SREVLMNLGPQHPSTHGVLRLLLQMDGEIVKRIEPHIGLLHRGTEKLCESFTYTQIFPLT 76
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DRLDY+ + YALAVE LLGI+ P R Q IRVL +E+ RI HLL MDVGA
Sbjct: 77 DRLDYLCQPSNNLGYALAVEALLGIKAPERAQYIRVLMAELSRISGHLLITGALPMDVGA 136
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+T L+ +RE +M E SG+RMH ++ R GGV +D+P VE I +CD F ++++
Sbjct: 137 ITTLLYTMRDREMIMDLMEMISGARMHTSFCRVGGVREDLPDGCVERIIEFCDIFENSIS 196
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
D +L+ NR+F R N+G + EDA G SG +R SG WD+R+ PYE Y LDF
Sbjct: 197 DYENLVGNNRVFLARVENVGNITGEDAIALGLSGPCLRASGIDWDIRRDAPYEIYDRLDF 256
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
++ + GDCYDR+ R+ EM ES+K+IRQCV ++ + G DPKI P D+
Sbjct: 257 NVIVRTDGDCYDRWKCRVDEMHESLKMIRQCVAQM----QPGLFLIDDPKIAFPVNKDLL 312
Query: 306 -RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
SME+ IHHFKL EG+ VP GEVY A+EAPKGE G Y+ISDG KP+R KIRAP + +
Sbjct: 313 AHSMEAHIHHFKLAAEGFKVPKGEVYTAIEAPKGELGFYIISDGTEKPFRVKIRAPSFVN 372
Query: 365 LQAMEFLCKGHQ-LADVSAILGSLDIVFGEVD 395
LQA+ + LADV A++GSLD V EVD
Sbjct: 373 LQALTDRTTNLKYLADVIAMIGSLDPVMKEVD 404
>gi|119512963|ref|ZP_01632024.1| NADH dehydrogenase delta subunit [Nodularia spumigena CCY9414]
gi|119462376|gb|EAW43352.1| NADH dehydrogenase delta subunit [Nodularia spumigena CCY9414]
Length = 394
Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats.
Identities = 167/395 (42%), Positives = 228/395 (57%), Gaps = 6/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +N GP HP+ HGVLRLI+ LDGE V +P IG LHRG EK+ E +T + V
Sbjct: 5 ETRTEPMVLNMGPHHPSMHGVLRLIVTLDGEDVVDCEPVIGYLHRGMEKIAENRTTVMYV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R DY A M E A E+L GI +P R IRV+ E+ RI +HLL D
Sbjct: 65 PYVSRWDYAAGMFNEAVTVNAPEQLAGITVPKRASYIRVIMLELNRIANHLLWFGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRM-HAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E A+G RM + YFR GGV D+P V+ +CD
Sbjct: 125 VGAQTPFFYQFREREMIYDLWEAATGYRMVNHNYFRVGGVAVDLPYGWVDKCLDFCDYLL 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R IGT+ E A WG SG M+R SG WDLRK YE Y
Sbjct: 185 PKVDEYERLVTDNPIFRRRVEGIGTISREQAINWGLSGPMLRASGVKWDLRKVDHYESYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+D+ GDC+ RY+VRM EMRESVKIIRQ + L G GP + K + +
Sbjct: 245 DFDWDVQWETAGDCFARYVVRMREMRESVKIIRQAIKGLPG----GPYENLEAKRMAAGK 300
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ + + K + + +P GE+Y+ VE+ KGE G+YL+ D P+R KIR
Sbjct: 301 KSEWDAFD-YQYIAKKVSPTFKMPKGEIYSRVESGKGELGIYLVGDDNGFPWRWKIRPAD 359
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +LQ + L KG ++AD+ ILGS+D++ G VDR
Sbjct: 360 FNNLQIVPELLKGMKVADIVVILGSVDVIMGSVDR 394
>gi|270308197|ref|YP_003330255.1| NADH:quinone oxidoreductase 49 kD subunit 7 [Dehalococcoides sp.
VS]
gi|270154089|gb|ACZ61927.1| NADH:quinone oxidoreductase 49 kD subunit 7 [Dehalococcoides sp.
VS]
Length = 367
Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats.
Identities = 164/393 (41%), Positives = 235/393 (59%), Gaps = 30/393 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K+ +F +N GPQHP+ HGV RL + LDGE++ ++P G LHRG EKL E +T+LQ +P+
Sbjct: 4 KTENFILNIGPQHPSTHGVFRLRIVLDGEVITDLEPVFGYLHRGIEKLAEGRTYLQDIPF 63
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDY+ M HAY +AVEKL GI +P R + IRV+ E+ R+ SHL + D+G
Sbjct: 64 TDRLDYLGSMTNNHAYVMAVEKLAGIAVPERAEYIRVILDELQRLASHLAGLGFFLNDLG 123
Query: 125 AL-TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
AL TP L+ F EREK++ ++ SG R++ Y+R GG QD+P E + + D+ P
Sbjct: 124 ALQTPLLYMFREREKIVELFDMCSGQRLNYNYYRFGGFVQDLPEEFLPALKKLLDTLPGF 183
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ L++ N I R +G +K E A +G ++R SG WD+R++ PY Y
Sbjct: 184 IDEYEQLISTNEIVLIRTKGVGVLKRELAINSSAAGPVLRASGVKWDIRRNDPYSIYDRF 243
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FDIP ++GD YDRYLVR+ EMR+SV+I+RQ L G + PK++
Sbjct: 244 EFDIPTAQNGDTYDRYLVRIQEMRQSVRILRQAAKDL----PEGEIMGKAPKLL------ 293
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
P GEVY+ +E PKGE G YL+SDG +KPYR ++R P
Sbjct: 294 -------------------KPPAGEVYSRIEGPKGELGFYLVSDGTDKPYRWRVRPPCLL 334
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L A++ + G ++AD+ AI GS+DIV GEVDR
Sbjct: 335 NLSALKDMVVGWKVADLMAIFGSIDIVMGEVDR 367
>gi|298566647|gb|ADI86444.1| NADH-plastoquinone oxidoreductase subunit 7 [Gynerium sagittatum]
Length = 393
Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats.
Identities = 166/393 (42%), Positives = 224/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWMDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKIDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRIGEMRESIKIIQQAVEKIPG----GPYENLEARRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|298566749|gb|ADI86495.1| NADH-plastoquinone oxidoreductase subunit 7 [Glyceria grandis]
Length = 393
Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats.
Identities = 168/393 (42%), Positives = 224/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E + +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRXIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + EDA WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITQNPIFLERVEGVGFISGEDAVNWGLSGPMLRASGVQWDLRKVDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKVRWQKEGDSLARYLVRVDEMRESIKIIQQAVEKIPG----GPYENLEVRRFNKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YLI D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLIGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|298566661|gb|ADI86451.1| NADH-plastoquinone oxidoreductase subunit 7 [Eragrostis tef]
Length = 393
Score = 393 bits (1011), Expect = e-107, Method: Composition-based stats.
Identities = 164/393 (41%), Positives = 224/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWMDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKIDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EM+ES+KII+Q + ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRIGEMKESIKIIQQAIEKIPG----GPYENLEARRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|298566657|gb|ADI86449.1| NADH-plastoquinone oxidoreductase subunit 7 [Spartina pectinata]
Length = 393
Score = 393 bits (1011), Expect = e-107, Method: Composition-based stats.
Identities = 165/393 (41%), Positives = 223/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GG D+P V+ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGXAADLPYGWVDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YE Y++
Sbjct: 186 VVEYQQLITRNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKIDAYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EM+ESVKII+Q + ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRIGEMKESVKIIQQAIEKIPG----GPYENLEARRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|298566673|gb|ADI86457.1| NADH-plastoquinone oxidoreductase subunit 7 [Micraira subulifolia]
Length = 393
Score = 393 bits (1011), Expect = e-107, Method: Composition-based stats.
Identities = 164/393 (41%), Positives = 224/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDFMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRV 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKIDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q + ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRIGEMRESIKIIQQAIEKIPG----GPYENLEARRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 KWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L + +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVQKMKLADIMTILGSIDIIMGEVDR 393
>gi|298566787|gb|ADI86514.1| NADH-plastoquinone oxidoreductase subunit 7 [Deschampsia cespitosa
subsp. cespitosa]
Length = 393
Score = 393 bits (1011), Expect = e-107, Method: Composition-based stats.
Identities = 165/393 (41%), Positives = 224/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YE Y++
Sbjct: 186 IVEYQQLITKNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDLYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q + ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRISEMRESIKIIQQAIEKIPG----GPYENLEVRRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YKFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|298566681|gb|ADI86461.1| NADH-plastoquinone oxidoreductase subunit 7 [Amphipogon strictus]
Length = 393
Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats.
Identities = 165/393 (41%), Positives = 224/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIVQYMP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWMDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKIDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q + ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRIGEMRESIKIIQQAIEKIPG----GPYENLEARRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 KWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|298566697|gb|ADI86469.1| NADH-plastoquinone oxidoreductase subunit 7 [Guadua angustifolia]
Length = 393
Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats.
Identities = 168/393 (42%), Positives = 224/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ I K GD RYLVRM EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKIQWQKEGDSLARYLVRMGEMRESIKIIQQAVEKIPG----GPYENLEVRRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|118473895|ref|YP_886421.1| NADH dehydrogenase subunit D [Mycobacterium smegmatis str. MC2 155]
gi|218534425|sp|A0QU33|NUOD_MYCS2 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|118175182|gb|ABK76078.1| NADH-quinone oxidoreducatase, D subunit [Mycobacterium smegmatis
str. MC2 155]
Length = 442
Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats.
Identities = 179/406 (44%), Positives = 245/406 (60%), Gaps = 22/406 (5%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
+N GPQHP+ HGVLRLILE++GEI+ IG LH G EK +E + + Q V + R+
Sbjct: 41 IVVNMGPQHPSTHGVLRLILEIEGEIITEARCGIGYLHTGIEKNLEYRNWTQGVTFVTRM 100
Query: 69 DYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
DY++P E AY L VEKLLGI +IP R +IRV+ E+ RI SHL+ + T M++GA+
Sbjct: 101 DYLSPFFNETAYCLGVEKLLGITDDIPERASVIRVMLMELNRISSHLVALATGGMELGAM 160
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
+ +GF ERE+++ +E +G RM+ AY RPGG+ D+P + + + + P L D
Sbjct: 161 SAMFYGFREREEILRVFESITGLRMNHAYIRPGGLAADLPDDAITQVRRLVEILPKRLKD 220
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ DLL N I+K R V +G + L G +G ++R +G DLRK+QPY Y +FD
Sbjct: 221 LEDLLNENYIWKARTVGVGYLDLTGCMALGITGPILRSTGLPHDLRKAQPYCGYENYEFD 280
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK------ 300
+ D Y RY++R+ EM ESVKI+ QC+ RL K GPV SD K+ P
Sbjct: 281 VITDDRCDSYGRYIIRVKEMHESVKIVEQCLARL----KPGPVMISDKKLAWPADLKLGP 336
Query: 301 ----------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGN 350
M RSME LIHHFKL TEG VP G+VY AVE+P+GE GV+++SDGG
Sbjct: 337 DGLGNSPEHIAKIMGRSMEGLIHHFKLVTEGIRVPPGQVYVAVESPRGELGVHMVSDGGT 396
Query: 351 KPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+PYR R P + +LQA+ C+G +AD A + S+D V G VDR
Sbjct: 397 RPYRVHYRDPSFTNLQAVAATCEGGMVADAIAAVASIDPVMGGVDR 442
>gi|298566695|gb|ADI86468.1| NADH-plastoquinone oxidoreductase subunit 7 [Chusquea aff. subulata
JID-2010]
Length = 393
Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats.
Identities = 168/393 (42%), Positives = 224/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ I K GD RYLVRM EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKIQWQKEGDSLARYLVRMGEMRESIKIIQQAVEKIPG----GPYENLEVRRFQKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|298566703|gb|ADI86472.1| NADH-plastoquinone oxidoreductase subunit 7 [Pariana radiciflora]
Length = 393
Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats.
Identities = 165/393 (41%), Positives = 224/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM +FR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNFFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITRNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVRM EMRES+KII+Q + ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRMGEMRESIKIIQQALEKIPG----GPYENLEVRRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDNSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|298566781|gb|ADI86511.1| NADH-plastoquinone oxidoreductase subunit 7 [Sclerochloa dura]
Length = 393
Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats.
Identities = 166/393 (42%), Positives = 224/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YE Y++
Sbjct: 186 IVEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDLYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRISEMRESIKIIQQAVEKIPG----GPYENLEARRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|298566789|gb|ADI86515.1| NADH-plastoquinone oxidoreductase subunit 7 [Holcus annuus]
Length = 393
Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats.
Identities = 166/393 (42%), Positives = 224/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R IG + E+A WG SG M+R SG WDLRK YE Y++
Sbjct: 186 IVEYQQLITQNPIFLERVEGIGFISGEEAVNWGLSGPMLRASGIQWDLRKVDFYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q + ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRISEMRESIKIIQQAIEKIPG----GPYENLEVRRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|11466853|ref|NP_039450.1| NADH dehydrogenase subunit 7 [Oryza sativa Japonica Group]
gi|50234044|ref|YP_052821.1| NADH dehydrogenase subunit 7 [Oryza nivara]
gi|146229322|ref|YP_654257.2| NADH dehydrogenase subunit 7 [Oryza sativa Indica Group]
gi|68565728|sp|Q6ENA1|NDHH_ORYNI RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|148887174|sp|P0C335|NDHH_ORYSA RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|148887175|sp|P0C336|NDHH_ORYSI RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|148887176|sp|P0C337|NDHH_ORYSJ RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|12056|emb|CAA33911.1| NADH dehydrogenase 49kDa protein [Oryza sativa Japonica Group]
gi|49615068|dbj|BAD26851.1| NADH dehydrogenase subunit 7 [Oryza nivara]
gi|226677|prf||1603356DE NADH dehydrogenase 49kD protein
Length = 393
Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats.
Identities = 167/393 (42%), Positives = 225/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YE Y++
Sbjct: 186 VIEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDLYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRIGEMRESIKIIQQAVEKIPG----GPYENLEVRRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+YA VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYARVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|272886794|gb|ACZ96472.1| NADH dehydrogenase subunit 7 [Didymium iridis]
gi|272886796|gb|ACZ96473.1| NADH dehydrogenase subunit 7 [Didymium iridis]
Length = 400
Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats.
Identities = 234/403 (58%), Positives = 286/403 (70%), Gaps = 15/403 (3%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K +++ INFGPQHPAAHGVLR+++EL+GE+++ DPHIGLLHRGTEKLIE K FLQ++PY
Sbjct: 2 KIKNYLINFGPQHPAAHGVLRMVVELNGEVIQNCDPHIGLLHRGTEKLIEHKNFLQSLPY 61
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLG----------IEIPIRGQLIRVLYSEIGRILSHLL 114
FDRLDYV+ M QEHAY++AVE L IEIP R + IR+L+ EI RIL+HLL
Sbjct: 62 FDRLDYVSMMAQEHAYSMAVETLFNDVYAKALLPTIEIPSRARSIRILFLEITRILNHLL 121
Query: 115 NVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIG 174
+TT AMDVGALTP LW FEEREKL+ FYER SG+RMH AY RPGGV D+P L++DI
Sbjct: 122 AITTHAMDVGALTPFLWAFEEREKLIEFYERVSGARMHTAYIRPGGVAFDLPLGLLKDIH 181
Query: 175 CWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKS 234
+ F L DI +LL NRIFK R +NIG V F+GVM RGSG +DLR+
Sbjct: 182 DFLLPFSRKLTDIEELLNENRIFKDRVLNIGVVPYNVVKDHAFTGVMARGSGIPYDLRRV 241
Query: 235 QPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDP 294
YE Y++ DF IP+G GDCYDR+L+R+ EMRES KII Q ++ GP+S S
Sbjct: 242 YNYENYNDYDFKIPVGSAGDCYDRFLIRVAEMRESCKIIAQVCCKITK----GPISVSFG 297
Query: 295 KIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGN-KPY 353
K P RA MK ME+LIHHFK ++ G +P G VY +VEAPKGEFG L+S N KPY
Sbjct: 298 KFANPSRALMKHQMEALIHHFKFFSNGIVMPEGTVYVSVEAPKGEFGTLLVSYQNNTKPY 357
Query: 354 RCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
RC IRAPG+ HL A+ + + H LADV AI+G+LDIVFGEVDR
Sbjct: 358 RCHIRAPGFHHLGAINRVSQNHSLADVVAIIGTLDIVFGEVDR 400
>gi|154149066|ref|YP_001405792.1| NADH dehydrogenase subunit D [Campylobacter hominis ATCC BAA-381]
gi|229891284|sp|A7HZV1|NUOD_CAMHC RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|153805075|gb|ABS52082.1| NADH dehydrogenase (quinone), d subunit [Campylobacter hominis ATCC
BAA-381]
Length = 408
Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats.
Identities = 169/393 (43%), Positives = 240/393 (61%), Gaps = 2/393 (0%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
++ + +NFGPQHP+AHG L+L+LE+DGE + + P IG +HRG EK+ E + + VP
Sbjct: 18 REGSNMILNFGPQHPSAHGQLKLVLEVDGEKIIKARPGIGYMHRGVEKMAENMIYQEFVP 77
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+DY+A + + + VEKL GI++P R Q+IR + E+ RI SHLL + T A+D+
Sbjct: 78 VTDRVDYIAAGSNNYGFCATVEKLCGIDVPRRAQIIRTMLLELNRIASHLLFLGTHALDI 137
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+T L+ F ERE ++ E+ SG+R+ + GG+ D+P ++++ +C+ FP
Sbjct: 138 GAMTVFLYTFREREYVLDLIEKYSGARLTHHNVKIGGMFVDLPDGWLDELLAFCEKFPRD 197
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ D LL NRI+ R N+G + E A G SGVM+R SG WD+RK +PY Y EL
Sbjct: 198 IADYEALLDTNRIWLLRTQNVGVITKEQALSCGCSGVMLRASGYKWDIRKEEPYLIYDEL 257
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DFD+P + GDCY RY + EMRESVKI+ QCV + A P+ V +
Sbjct: 258 DFDVPYAEAGDCYARYKCYVQEMRESVKILTQCVPLYKASEPK--ILADSPEFVSAGKEQ 315
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ SL+ HF L T+G P GE+Y A E+PKGE G Y+ S G + PYR KIR P +
Sbjct: 316 LMSQNYSLMQHFVLITQGLKPPEGEIYLATESPKGELGFYIYSVGESSPYRLKIRCPSFW 375
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H E + G +ADV+AI+GS +I+ GEVDR
Sbjct: 376 HCAIYEEIMPGQYIADVTAIIGSSNIILGEVDR 408
>gi|116624760|ref|YP_826916.1| NADH dehydrogenase I, D subunit [Candidatus Solibacter usitatus
Ellin6076]
gi|122252714|sp|Q01UN9|NUOD2_SOLUE RecName: Full=NADH-quinone oxidoreductase subunit D 2; AltName:
Full=NADH dehydrogenase I subunit D 2; AltName:
Full=NDH-1 subunit D 2
gi|116227922|gb|ABJ86631.1| NADH dehydrogenase I, D subunit [Candidatus Solibacter usitatus
Ellin6076]
Length = 370
Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats.
Identities = 162/392 (41%), Positives = 240/392 (61%), Gaps = 29/392 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
S +N GPQHP+ HGVLR+IL+LDGE V D IG LHRG EK+ E +T+ Q PY
Sbjct: 8 DSTELVLNMGPQHPSTHGVLRVILKLDGEKVLGTDCIIGYLHRGVEKIAENRTYAQFNPY 67
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DYVA ++ Y LA+EKLL +E P R Q IRV+ +E+ RI SHLL + T A+D+G
Sbjct: 68 VDRMDYVAAVSNGLGYCLAIEKLLNVEAPPRAQCIRVILTELNRIASHLLWLGTHALDIG 127
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A+TP + ERE+ + +E+ G+R+ FR GG+ + ++I +C F +
Sbjct: 128 AITPVFYCLREREEALKIFEKYCGARLTTHAFRIGGLLYETYDGFEQEIRDFCKMFIPKV 187
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
++ +LLT NRI+ R ++G + ++ +G +G ++R +G WDLRK+QPY Y + D
Sbjct: 188 DEYEELLTNNRIWVGRLKDVGILSADECKEFGVTGPVLRAAGVKWDLRKAQPYSGYEKYD 247
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F+IP +GD YDRY+VRM EMR+SV+I++Q V+ + GP+ K++
Sbjct: 248 FEIPTRVNGDTYDRYIVRMEEMRQSVRIMQQAVDGI----PEGPIMGKVGKVI------- 296
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P+GE Y ++EAPKGE G Y +SDG +PYR ++R P + +
Sbjct: 297 ------------------KPPIGEAYVSIEAPKGELGYYAVSDGSTQPYRIRVRPPSFVN 338
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
LQA++ + +G +ADV A++G+LDIV GE+DR
Sbjct: 339 LQALDRMIRGGLIADVVAVIGTLDIVLGEIDR 370
>gi|253729609|ref|YP_003029795.1| NdhH [Bambusa oldhamii]
gi|246367119|gb|ACS94730.1| NdhH [Bambusa oldhamii]
Length = 393
Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats.
Identities = 168/393 (42%), Positives = 224/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITQNPIFIERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ I K GD RYLVRM EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKIQWQKEGDSLARYLVRMGEMRESIKIIQQAVEKIPG----GPYENLEVRRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|22298831|ref|NP_682078.1| NAD(P)H-quinone oxidoreductase subunit H [Thermosynechococcus
elongatus BP-1]
gi|81743124|sp|Q8DJD9|NDHH_THEEB RecName: Full=NAD(P)H-quinone oxidoreductase subunit H; AltName:
Full=NAD(P)H dehydrogenase subunit H; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H;
AltName: Full=NDH-1 subunit H; Short=NDH-H
gi|22295012|dbj|BAC08840.1| NADH dehydrogenase subunit 7 [Thermosynechococcus elongatus BP-1]
Length = 394
Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats.
Identities = 168/395 (42%), Positives = 227/395 (57%), Gaps = 6/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ IN GP HP+ HGVLRL++ LDGE V +P IG LHRG EK+ E +T + +
Sbjct: 5 ETRTEPMVINMGPHHPSMHGVLRLMVTLDGEDVIDCEPVIGYLHRGMEKIAENRTNIMFI 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R DY A M E A EKL GI +P R IRV+ E+ RI +HLL + D
Sbjct: 65 PYVSRWDYAAGMFNEAVTVNAPEKLAGIPVPKRASYIRVIMLELNRIANHLLWLGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRM-HAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E A+G R + YFR GGV D+ V +CD F
Sbjct: 125 VGAQTPFFYIFREREYIYDLFEAATGMRFINNNYFRIGGVAADLTYGWVTKCRDFCDYFL 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY
Sbjct: 185 PKVDEYERLITNNPIFVRRLQGVGKISREEAINWGLSGPMLRASGVKWDLRKVDHYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+D+P+ GDC RY+VR+ EMRESVKIIRQ ++ L G GP + K +
Sbjct: 245 DFDWDVPVATEGDCLARYIVRIQEMRESVKIIRQALDGLPG----GPYENLEAKRMLEGA 300
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ + K + + +P GE Y VE+ KGE G+YLI D P+R KIR P
Sbjct: 301 KSEWNGFD-YQYIGKKLSPTFKIPKGEHYVRVESGKGELGIYLIGDDNVFPWRWKIRPPD 359
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +LQ + L KG ++AD+ AILGS+D++ G VDR
Sbjct: 360 FNNLQVLPQLLKGMKVADIVAILGSIDVIMGSVDR 394
>gi|283778531|ref|YP_003369286.1| NADH dehydrogenase (quinone) [Pirellula staleyi DSM 6068]
gi|283436984|gb|ADB15426.1| NADH dehydrogenase (quinone) [Pirellula staleyi DSM 6068]
Length = 404
Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats.
Identities = 165/396 (41%), Positives = 230/396 (58%), Gaps = 7/396 (1%)
Query: 5 KSRSF--TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
KS + T+NFGPQHPA H LRL+L+LDGE V P IG LH G EK+ E F Q V
Sbjct: 12 KSEDYLWTLNFGPQHPATHTTLRLVLKLDGERVVDAVPDIGYLHSGFEKIGEHLDFNQYV 71
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
DR++Y++PM A+ AVEKL+GIEI R + IR + E+ RI HLL+ +D
Sbjct: 72 TVTDRMNYISPMANNVAWHGAVEKLMGIEITPRCKYIRTIICELARISDHLLSTGAMGLD 131
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
GA T L+ F +RE++ +E G+R +Y R GG+ QD+ P ++E I + +FP
Sbjct: 132 TGAFTFFLYAFYQRERIYDIFETLCGARFTNSYTRVGGLSQDMTPLVIEKIRDFLRTFPQ 191
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++D+ L+ NRIF R +G + E A +G + R SG DLRK +PY Y +
Sbjct: 192 TIDDMERLVNRNRIFVDRMKGVGLLSKERATNMSATGPVARASGVTRDLRKDEPYLAYGD 251
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LDF + GDC+ RY VRM EMRES+KI+ Q + L D + P +A
Sbjct: 252 LDFQVCCATAGDCFARYYVRMAEMRESLKIVAQALENLPAGPVNV---GMDDRAALPSKA 308
Query: 303 DMKRSMESLIHHFKLYT--EGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
++ +++E I HF+L G+ VP EVY+A+EAP GE G YL+ DG + YR + R P
Sbjct: 309 EVYQTIEGTITHFELVMLNRGFTVPNEEVYSAIEAPNGELGFYLVGDGSDVAYRARCRPP 368
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ H L +GH L+DV A+LGSL+I+ E+DR
Sbjct: 369 SFIHFSLFPELIRGHTLSDVVAVLGSLNIIAAELDR 404
>gi|298566793|gb|ADI86517.1| NADH-plastoquinone oxidoreductase subunit 7 [Festuca rubra]
Length = 393
Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats.
Identities = 165/393 (41%), Positives = 224/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YE Y++
Sbjct: 186 IVEYQRLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDLYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q + ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRISEMRESIKIIQQAIEKIPG----GPYENLEVRRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWDDFE-YKFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|298566779|gb|ADI86510.1| NADH-plastoquinone oxidoreductase subunit 7 [Puccinellia distans]
Length = 393
Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats.
Identities = 166/393 (42%), Positives = 224/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YE Y++
Sbjct: 186 IVEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDLYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRISEMRESIKIIQQAVEKIPG----GPYENLEVRRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|315445432|ref|YP_004078311.1| NADH dehydrogenase subunit D [Mycobacterium sp. Spyr1]
gi|315263735|gb|ADU00477.1| NADH dehydrogenase subunit D [Mycobacterium sp. Spyr1]
Length = 442
Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats.
Identities = 178/412 (43%), Positives = 243/412 (58%), Gaps = 19/412 (4%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GPQHP+ HGVLRLILE++GE + IG LH G EK +E +T+ Q V
Sbjct: 32 EHAGERIVVNMGPQHPSTHGVLRLILEIEGETIVEARCGIGYLHTGIEKNLEFRTWTQGV 91
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R+DY++P E AY L VEKLLG+ +IP R +IRV+ E+ RI SHL+ + T
Sbjct: 92 TFVTRMDYLSPFFNETAYCLGVEKLLGVTDDIPERASVIRVMMMELNRISSHLVALATGG 151
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
M++GA+T GF ERE ++ +E +G RM++AY RPGGV D+P E + I
Sbjct: 152 MELGAMTAMFLGFRERELILSVFETITGLRMNSAYIRPGGVAADLPEEGLPQIRELLTLL 211
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P+ L D+ +LL N I+K R + +G + L G +G ++R +G DLRKSQPY Y
Sbjct: 212 PTRLRDMENLLNENYIWKARTLGVGYLDLTGCMALGITGPVLRSTGLPHDLRKSQPYCGY 271
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
DFD+ D Y RYL+R+ EMRES++I+ QCV RL PV +D K+ P
Sbjct: 272 QTYDFDVITDDRCDSYGRYLIRVKEMRESIRIVEQCVERLERSTGE-PVMITDRKLAWPA 330
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
M SME LIHHFKL TEG VP G+VY AVE+P+GE GV++
Sbjct: 331 DLKVGPDGLGNSPEHIAKIMGHSMEGLIHHFKLVTEGIRVPPGQVYVAVESPRGELGVHM 390
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +PYR R P + +LQA+ +C+G +AD + S+D V G VDR
Sbjct: 391 VSDGGTRPYRVHYRDPSFTNLQAVAAMCEGGMVADAITAVASIDPVMGGVDR 442
>gi|17230847|ref|NP_487395.1| NAD(P)H-quinone oxidoreductase subunit H [Nostoc sp. PCC 7120]
gi|28201838|sp|Q8YRT8|NDHH_ANASP RecName: Full=NAD(P)H-quinone oxidoreductase subunit H; AltName:
Full=NAD(P)H dehydrogenase subunit H; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H;
AltName: Full=NDH-1 subunit H; Short=NDH-H
gi|17132450|dbj|BAB75054.1| NADH dehydrogenase subunit 7 [Nostoc sp. PCC 7120]
Length = 394
Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats.
Identities = 170/395 (43%), Positives = 229/395 (57%), Gaps = 6/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +N GP HP+ HGVLRLI+ LDGE V +P IG LHRG EK+ E +T + V
Sbjct: 5 ETRTEPMVLNMGPHHPSMHGVLRLIVTLDGEDVVDCEPVIGYLHRGMEKIAENRTTVMYV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R DY A M E A EKL G+ +P R IRV+ E+ RI +HLL D
Sbjct: 65 PYVSRWDYAAGMFNEAVTVNAPEKLAGVAVPKRASYIRVIMLELNRIANHLLWFGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRM-HAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E A+G RM + YFR GGV D+P V+ +CD F
Sbjct: 125 VGAQTPFFYQFREREMIYDLWEAATGYRMVNNNYFRVGGVAADLPYGWVDKCLEFCDYFL 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R IGT+ E+A WG SG M+R SG WDLRK YECY
Sbjct: 185 PVIDEYEKLVTNNPIFRRRIEGIGTISREEAINWGLSGPMLRASGVKWDLRKVDHYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+D+ GDC RY VRM EMRESVKII+Q + L G GP + K + +
Sbjct: 245 DFDWDVQWETAGDCLARYTVRMREMRESVKIIKQAIKGLPG----GPYENLEAKRLAAGK 300
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ + + K + + +P GE+YA VE+ KGE G+YLI D P+R KIR
Sbjct: 301 KSEWDAFD-YQYIGKKVSPTFKMPKGEIYARVESGKGELGIYLIGDDNVFPWRWKIRPAD 359
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +LQ + L +G ++ADV ILGS+D++ G VDR
Sbjct: 360 FNNLQILPHLLRGMKVADVVVILGSIDVIMGSVDR 394
>gi|255961437|ref|YP_003097632.1| NADH-plastoquinone oxidoreductase subunit 7 [Dendrocalamus
latiflorus]
gi|255040314|gb|ACT99974.1| NADH-plastoquinone oxidoreductase subunit 7 [Dendrocalamus
latiflorus]
Length = 393
Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats.
Identities = 168/393 (42%), Positives = 224/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITQNPIFIERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ I K GD RYLVRM EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKIQWQKEGDSLARYLVRMGEMRESIKIIQQAVEKIPG----GPYENLEVRRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKKKLADIMTILGSIDIIMGEVDR 393
>gi|218176297|ref|YP_002364554.1| NADH-plastoquinone oxidoreductase subunit 7 [Festuca arundinacea]
gi|229891143|sp|B8Y2U9|NDHH_FESAR RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|215882381|gb|ACJ70811.1| NADH-plastoquinone oxidoreductase subunit 7 [Festuca arundinacea]
Length = 393
Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats.
Identities = 164/393 (41%), Positives = 224/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ L+ N IF +R +G + E+A WG SG M+R SG WDLRK YE Y++
Sbjct: 186 ISEYQQLIKQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDLYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q + ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRISEMRESIKIIQQAIEKIPG----GPYENLEVRRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YKFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|242310557|ref|ZP_04809712.1| NADH oxidoreductase I [Helicobacter pullorum MIT 98-5489]
gi|239522955|gb|EEQ62821.1| NADH oxidoreductase I [Helicobacter pullorum MIT 98-5489]
Length = 409
Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats.
Identities = 170/396 (42%), Positives = 244/396 (61%), Gaps = 2/396 (0%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
D+ + +NFGPQHP+AHG LRLILEL+GE V + P IG LHRG EK+ E + +
Sbjct: 16 FDRINDNAMVLNFGPQHPSAHGQLRLILELEGEKVLKATPDIGYLHRGMEKMAENMIYNE 75
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+P DR+DY+A + +A+AL VE+LLG+E+P R Q+IR + E+ RI+SHL + T A
Sbjct: 76 FLPTTDRMDYIAASSNNYAFALGVERLLGVEVPRRAQVIRTMLLELNRIISHLFWLATHA 135
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+DVGA++ L+ F ERE + E G+R+ + R GGV D+P + + + DS
Sbjct: 136 LDVGAMSIFLYCFREREFGIDLIEDYCGARLTHSSIRIGGVPLDLPQDWCGKLKTYLDSL 195
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P + +L+ NRI++ R N+G + E A WG SGVM+RGSG WD+RK +PYE Y
Sbjct: 196 PKQIELYEGILSENRIWRMRLENVGVISPEMAKSWGLSGVMLRGSGIEWDIRKEEPYELY 255
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
ELDFD+P+ D Y RYL+ M EMR+S++I+ Q + + + + + D +
Sbjct: 256 GELDFDVPVSYSNDSYGRYLLYMEEMRQSIRILYQLIEKYKDTDSL--IMCEDGRYFSAP 313
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ + SL+ HF L T+G PVGEVY E+PKGE G ++ S+G PYR K+R P
Sbjct: 314 KEQIMTQNYSLMQHFVLVTQGMRPPVGEVYVPTESPKGELGFFIRSEGEPYPYRVKMRTP 373
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ H ++ L GH LADV I+G+ +IVFGE+DR
Sbjct: 374 SFFHTGVLQDLLPGHYLADVVTIIGNTNIVFGEIDR 409
>gi|48474401|sp|Q85UU0|NDHH_ANTFO RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|27808107|dbj|BAC55507.1| NADH dehydrogenase 49 kDa subunit [Anthoceros formosae]
Length = 393
Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats.
Identities = 171/396 (43%), Positives = 230/396 (58%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M K+ T++ GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 MLAAKADPMTLSMGPHHPSMHGVLRLIVTLDGENVTDCEPILGYLHRGMEKIAENRTIVQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E A EKL I++P R IR++ E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEAITVNAPEKLTNIQVPKRASYIRIIMLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + ERE + +E A+G RM +FR GGV D+P V+ +CD F
Sbjct: 123 ADIGAQTPFFYILREREMIYDLFEAATGMRMMHNFFRIGGVAVDLPYGWVDKCLDFCDYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+++ L+T N IF +R +GT+ E+A WG SG+M+R SG WDLRK YECY
Sbjct: 183 SLKVDEYERLITYNSIFLKRVEGVGTISREEAINWGLSGLMLRASGVQWDLRKVDHYECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
ELD+ + GD RYLVR+ EMRESVKII+Q + + G GP + + +
Sbjct: 243 DELDWQVQSQTEGDSLARYLVRIGEMRESVKIIQQALKVIPG----GPYENLEARRLNQG 298
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ E K + + +P E Y VEAPKGE G+YLI D P+R KIR P
Sbjct: 299 KDSEWNDFE-YQFISKKPSPTFKLPKQEHYIRVEAPKGELGIYLIGDDSVFPWRWKIRPP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L KG +LAD+ ILGS+DI+ GEVDR
Sbjct: 358 GFINLQILPQLVKGMKLADIMTILGSIDIIMGEVDR 393
>gi|298566699|gb|ADI86470.1| NADH-plastoquinone oxidoreductase subunit 7 [Buergersiochloa
bambusoides]
Length = 393
Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats.
Identities = 166/393 (42%), Positives = 223/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPELFENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVRM EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRMGEMRESIKIIQQAVEKIPG----GPYENLEVRRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDNSPFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|298566639|gb|ADI86440.1| NADH-plastoquinone oxidoreductase subunit 7 [Streptochaeta
sodiroana]
Length = 393
Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats.
Identities = 166/393 (42%), Positives = 226/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQVPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N +F +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQKLITHNPVFLERVEGVGFISGEEAANWGLSGPMLRASGIKWDLRKVDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+++ K GD RYLVR+ EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWEVQWQKEGDSLARYLVRIGEMRESIKIIQQAVEKIPG----GPYENLEVRRFNRTKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+YA VEAPKGE G+YLI D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYARVEAPKGELGIYLIGDNSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|77164634|ref|YP_343159.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Nitrosococcus oceani ATCC 19707]
gi|123594560|sp|Q3JC17|NUOCD_NITOC RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|76882948|gb|ABA57629.1| NADH dehydrogenase subunit D / NADH dehydrogenase subunit C
[Nitrosococcus oceani ATCC 19707]
Length = 593
Score = 392 bits (1006), Expect = e-107, Method: Composition-based stats.
Identities = 159/391 (40%), Positives = 227/391 (58%), Gaps = 4/391 (1%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ +N GP HP+ HGV R++L+LDGE + P IG HRG EK+ E +++ +PY
Sbjct: 207 TDFMFLNLGPNHPSVHGVFRIVLQLDGEEIVDAVPDIGYHHRGAEKMGERQSWHTYIPYT 266
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DR+DY+ + Y LAVE+L GI++P R ++IRV+ +E+ RI SHL+ T A DVG
Sbjct: 267 DRIDYLGGVMNNLPYVLAVEQLAGIQVPERVKVIRVMLAELFRIASHLVFYGTFAQDVGQ 326
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
L+P + F +RE++ E G RMH +FR GGV QD+P + I + P L
Sbjct: 327 LSPVFYMFTDRERVFDIIEAICGGRMHPEWFRIGGVAQDLPRGWDDLIRDFLRYLPPRLA 386
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ NRI K+R +G+ + +A WG +G +R G WD RK +PY Y + F
Sbjct: 387 KYDKIAMNNRILKKRTQGVGSYTIAEAMEWGVTGPGLRACGLEWDFRKQRPYSGYEQFQF 446
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
DIP+ +HGDCYDR VR+ EMR+S++II QC+N + G A P PP++
Sbjct: 447 DIPVAQHGDCYDRCWVRIEEMRQSLRIIEQCLNHMPA----GSYKADHPLTTPPRKERTM 502
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
+E+LI HF + G +P GE +EA KG YLISDG +PYR +IR P + HL
Sbjct: 503 HDIETLISHFLSVSWGPVIPAGEACVGIEATKGNNSYYLISDGHTQPYRVRIRTPSFPHL 562
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Q + + +G + D+ A LGS+D V +VDR
Sbjct: 563 QMIPLISRGSMVPDLIATLGSIDFVMADVDR 593
>gi|298566709|gb|ADI86475.1| NADH-plastoquinone oxidoreductase subunit 7 [Brachyelytrum erectum]
Length = 393
Score = 392 bits (1006), Expect = e-107, Method: Composition-based stats.
Identities = 167/393 (42%), Positives = 225/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAXTPFFYIFRERELIYDLFEAATGMRMXHNYFRIGGVAADLPYGWIBKCLXFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T B IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 IAEYQQLITQBPIFLERVEGVGFISGEEAXNWGLSGPMLRASGIQWDLRKVDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRESVKII+Q + ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRISEMRESVKIIQQAIEKIPG----GPYENLEVRRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YLI D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLIGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|302523880|ref|ZP_07276222.1| NADH dehydrogenase D subunit [Streptomyces sp. AA4]
gi|302432775|gb|EFL04591.1| NADH dehydrogenase D subunit [Streptomyces sp. AA4]
Length = 443
Score = 392 bits (1006), Expect = e-107, Method: Composition-based stats.
Identities = 171/411 (41%), Positives = 245/411 (59%), Gaps = 20/411 (4%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
D + IN GPQHP+ HGVLRL+LEL+GE V ++ +G LH G EK E + + Q
Sbjct: 37 DAQHDDRMVINMGPQHPSTHGVLRLVLELEGERVTQLRAVVGYLHTGIEKSAEFRNWTQG 96
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
V + R DY+AP++ E Y L VEKLLGI+ P R +L+RVL E+ RI SHL+ + T M
Sbjct: 97 VTFVTRADYLAPLSNEMCYCLGVEKLLGIKAPPRAELLRVLLLELNRITSHLVFIATGGM 156
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D+GA T GF ERE+ M E +G RM+ A+ RPGG+ QD P + E + +C
Sbjct: 157 DLGATTAMTLGFREREEAMHLLEYLTGLRMNHAFIRPGGLAQDFPEDWTEKVLDFCKIMD 216
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
L + TG I++ R ++G + L+ G +G ++R +G WDLRK++PY Y
Sbjct: 217 KRLPLYDKMFTGQPIWRNRLKDVGVLPLDACLELGVTGPVLRAAGLPWDLRKTEPYSRYD 276
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK- 300
E++FD+P D + RYL+R+ E+ +S++I++Q V + GPV D KI P
Sbjct: 277 EIEFDVPTSTDADSWARYLLRLEEIHQSLRIMKQVVKM----AEPGPVMVEDKKIAWPAQ 332
Query: 301 ---------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLI 345
+ M +SMESLIHHFKL TEG+HVP G+VY AVE+P+GE +L+
Sbjct: 333 LSIGSDGMGNSLAHVKKIMGQSMESLIHHFKLVTEGFHVPPGQVYTAVESPRGEIAAHLV 392
Query: 346 SDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
SDGG +P R +R P + ++QAM + +G +AD+ ++ S+D V G VDR
Sbjct: 393 SDGGTRPLRVHLREPSFVNMQAMPAMAEGGLVADLVVVIASIDPVLGGVDR 443
>gi|298566783|gb|ADI86512.1| NADH-plastoquinone oxidoreductase subunit 7 [Phleum pratense]
Length = 393
Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats.
Identities = 167/393 (42%), Positives = 225/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YE Y++
Sbjct: 186 IVEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDLYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRESVKII+Q V ++ G GP + + ++
Sbjct: 246 DWKVQWQKEGDSLARYLVRISEMRESVKIIQQAVEKIPG----GPYENLEVRRFKKEKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|311744395|ref|ZP_07718197.1| NADH-quinone oxidoreductase subunit D [Aeromicrobium marinum DSM
15272]
gi|311312361|gb|EFQ82276.1| NADH-quinone oxidoreductase subunit D [Aeromicrobium marinum DSM
15272]
Length = 452
Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats.
Identities = 176/411 (42%), Positives = 232/411 (56%), Gaps = 19/411 (4%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+N GPQHP+ HGVLRLILE+DGE V IG LH G EK +E +T+ Q V
Sbjct: 43 ADGDRIVVNMGPQHPSTHGVLRLILEIDGETVTDARAGIGYLHTGIEKNMEYRTWTQGVT 102
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+ R+DYVAP + E AY AVEKLLGI+ +P R IRVL E+ RI SHL+ + T M
Sbjct: 103 FCTRMDYVAPFSNEAAYVGAVEKLLGIDAIVPQRALDIRVLMLELNRISSHLVCIATGGM 162
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
++GALT GF +RE ++ +E SG RM+ AYFRPGGV QD+P + +
Sbjct: 163 EIGALTVMTCGFRDRELILDLFEAISGLRMNHAYFRPGGVAQDLPDGAIALLRDKVALLK 222
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
L + + L N IFK R +G + L G SG +R +G WDLR++ PY Y
Sbjct: 223 KRLPEYAALCNANPIFKGRLQGVGHLDLAGCLALGISGPPLRATGYDWDLRRTDPYWGYE 282
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK- 300
DFD+ D Y R+ VR+ EM ES++I+ Q ++RL PV D KI P
Sbjct: 283 TYDFDVVTRDEPDAYGRFRVRLDEMWESMRIVEQAIDRLEASAGD-PVMIGDAKIAWPAQ 341
Query: 301 ---------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLI 345
R M SME+LIHHFKL TEG+ VP G+ Y A+EAP+GE G + +
Sbjct: 342 LSVGADGQGNSAEHIRRIMGESMEALIHHFKLVTEGFRVPTGQTYMAIEAPRGEIGCHAV 401
Query: 346 SDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
SDGG +PYR R P + +LQA + +G ++DV + S+D V G VDR
Sbjct: 402 SDGGTRPYRVHFRDPSFVNLQATSVMSEGGMISDVIVAVASIDPVMGGVDR 452
>gi|254821137|ref|ZP_05226138.1| NADH dehydrogenase subunit D [Mycobacterium intracellulare ATCC
13950]
Length = 441
Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats.
Identities = 176/413 (42%), Positives = 242/413 (58%), Gaps = 22/413 (5%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ +N GPQHP+ HGVLRLILE++GE V IG LH G EK +E + + Q
Sbjct: 33 NADPGERIVVNMGPQHPSTHGVLRLILEIEGETVTDARCGIGYLHTGIEKNLEYRYWTQG 92
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
V + R+DY+AP E AY L VEKLLGI IP R +IRVL E+ RI SHL+ + T
Sbjct: 93 VTFVTRMDYLAPFFNETAYCLGVEKLLGITDQIPERVDVIRVLMMELNRISSHLVALATG 152
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
M++GA+TP GF RE ++ +E +G RM++ Y RPGGV QD+PP +I +
Sbjct: 153 GMELGAMTPMFVGFRGREIVLTLFESITGLRMNSNYIRPGGVAQDLPPNAQTEIAEALEP 212
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
L ++S LL N I+K R ++G + L G +G ++R +G DLRKS+PY
Sbjct: 213 LREVLREMSGLLNENAIWKARTQDVGYLDLTGCMALGITGPILRATGLPHDLRKSEPYCG 272
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y +FD+ D Y RY++R+ EM ES+KI+ QC+++L K GP D KI P
Sbjct: 273 YENYEFDVITEDTCDAYGRYMIRVNEMWESIKIVEQCLDKL----KPGPTMVEDRKIAWP 328
Query: 300 K----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVY 343
M SME+LIHHFKL TEG VP G+VY AVE+P+GE GV+
Sbjct: 329 ADLKVGPDGMGNSPEHIAKIMGGSMEALIHHFKLVTEGIRVPPGQVYTAVESPRGELGVH 388
Query: 344 LISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++SDGG +PYR R P + +LQ++ +C+G +AD+ + S+D V G VDR
Sbjct: 389 MVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGLVADLITSVASIDPVMGGVDR 441
>gi|152990040|ref|YP_001355762.1| NADH dehydrogenase subunit D [Nitratiruptor sp. SB155-2]
gi|229891291|sp|A6Q1P6|NUOD_NITSB RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|151421901|dbj|BAF69405.1| NADH-quinone oxidoreductase, chain D [Nitratiruptor sp. SB155-2]
Length = 410
Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats.
Identities = 173/396 (43%), Positives = 246/396 (62%), Gaps = 4/396 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++ +NFGPQHP+AHG LRLILE+DGE + + P IG LHRG EK+ E + + +
Sbjct: 17 ERDDNKMVVNFGPQHPSAHGQLRLILEMDGEQITKAVPDIGYLHRGMEKMGENMIYNEFL 76
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
P DR+DY+A + +A+ALAVE+LLGIE +P R ++IR++ E+ RI+SHL + T A
Sbjct: 77 PTTDRMDYIAATSNNYAFALAVERLLGIEDKVPRRAKVIRMILLELNRIISHLFWLATHA 136
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+DVGA++ L+ F ERE M E G+R+ + R GGV D+P ++ + + ++
Sbjct: 137 LDVGAMSVFLYCFREREYAMDLIEDYCGARLTHSSVRIGGVPLDLPEGWLDRLNVYLNNL 196
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P + LLT NRI++ R +G + E A W SG+M+RGSG +D+RK +PYE Y
Sbjct: 197 PDQIKLYEGLLTENRIWRMRLEEVGVIPPEMAKQWACSGIMLRGSGIEYDIRKEEPYELY 256
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E+DFDIP+ D Y RYL+ M EMR+S++IIRQ + + A P+ +
Sbjct: 257 DEVDFDIPVSDRCDSYGRYLLYMEEMRQSIRIIRQLIPMYKETEPQ--LMAHAPEYISAH 314
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ D+ SL+ HF L T+G PVGEVY E+PKGE G ++ S+G PYR KIRAP
Sbjct: 315 KEDIMTQNYSLMQHFVLVTQGMRPPVGEVYVPTESPKGELGFFIRSEGEPYPYRLKIRAP 374
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ H ++ L GH LADV I+GS +IVFGE+DR
Sbjct: 375 SFWHTGILQDLLPGHYLADVVTIIGSTNIVFGEIDR 410
>gi|298566777|gb|ADI86509.1| NADH-plastoquinone oxidoreductase subunit 7 [Aira caryophyllea]
Length = 393
Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats.
Identities = 167/393 (42%), Positives = 224/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P + +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWINKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY++
Sbjct: 186 IVEYQQLITQNPIFLERVEGVGLISGEEAVNWGLSGPMLRASGIQWDLRKVDLYECYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRISEMRESIKIIQQAVEKIPG----GPYENLEVRRFKKGKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YKFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|161784249|ref|YP_001595565.1| NADH dehydrogenase 49KDa subunit [Lemna minor]
gi|218527777|sp|A9L9F3|NDHH_LEMMI RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|88696827|gb|ABD48552.1| NADH dehydrogenase 49KDa subunit [Lemna minor]
Length = 395
Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats.
Identities = 169/393 (43%), Positives = 230/393 (58%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 8 TKNDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIVQYLP 67
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E+L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 68 YVTRWDYLATMFTEAITVNAPEQLGNIQVPQRASYIRVIMLELSRIASHLLWLGPFMADI 127
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F +
Sbjct: 128 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLTG 187
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ L+T N IF +R IG + E+A WG SG M+R SG +WDLRK YECY+E
Sbjct: 188 IDEYEKLITRNPIFLERVEGIGIISGEEAINWGLSGPMLRASGISWDLRKVDQYECYNEF 247
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+++ K GD RYLVRM EMRES+KII+Q + + G GP + + +
Sbjct: 248 DWEVQWQKEGDSLARYLVRMSEMRESIKIIQQALEGIPG----GPYENLEVRRFDKTKDS 303
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G++LI D P+R KIR PG+
Sbjct: 304 EWNDFE-YRFISKKPSPNFELSKQELYVRVEAPKGELGIFLIGDQNVFPWRWKIRPPGFI 362
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 363 NLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 395
>gi|159106920|ref|YP_001531338.1| NADH-plastoquinone oxidoreductase subunit 7 [Lolium perenne]
gi|218527780|sp|A8Y9E3|NDHH_LOLPR RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|158934454|emb|CAO86032.1| NADH-plastoquinone oxidoreductase subunit 7 [Lolium perenne]
Length = 393
Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats.
Identities = 164/393 (41%), Positives = 223/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+ N IF +R +G + E+A WG SG M+R SG WDLRK YE Y++
Sbjct: 186 IIEYQQLIKQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDLYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q + ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRISEMRESIKIIQQAIEKIPG----GPYENLEVRRFKKAKTS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YKFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|296140854|ref|YP_003648097.1| NADH dehydrogenase I, D subunit [Tsukamurella paurometabola DSM
20162]
gi|296028988|gb|ADG79758.1| NADH dehydrogenase I, D subunit [Tsukamurella paurometabola DSM
20162]
Length = 426
Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats.
Identities = 178/408 (43%), Positives = 249/408 (61%), Gaps = 22/408 (5%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GPQHP+ HGVLRLILELDGE V IG LH G EK +E +T+ Q +
Sbjct: 23 ERIVVNMGPQHPSTHGVLRLILELDGETVTEARCGIGFLHTGIEKNLEFRTWTQGTTFVT 82
Query: 67 RLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
R+DY+AP+ E AY LAVEKLLGI EIP R +IRVL E+ R+ S L+ + T M++G
Sbjct: 83 RMDYLAPLFNETAYCLAVEKLLGITDEIPERATVIRVLMMELNRVTSDLVALATGGMELG 142
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++P L GFE RE+++ +E +G RM+ AY RPGGV D+P + + I + P L
Sbjct: 143 AVSPMLKGFEIREQILNVFETITGLRMNHAYIRPGGVAADLPDDALPQIRELLRTLPPQL 202
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ ++ +LTGN I+ R ++G + L A G +G ++R +G DLR+S+PY Y + +
Sbjct: 203 DSMAGMLTGNPIWMARTKDVGYLDLTGAMALGITGPVLRSTGLPHDLRRSEPYCGYEDYE 262
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK---- 300
FD+ DCY RYL+R+ EM +S++I+ QC++RL GPV D ++ P
Sbjct: 263 FDVITDTGCDCYGRYLIRVHEMTQSLRIVEQCLDRLA----PGPVMIDDARLGWPADLTV 318
Query: 301 ------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG 348
M SMESLIHHFKL TEG+ VP G+V +VEAP+GE V+ +SDG
Sbjct: 319 GPDGLGNSRAHIAEIMGESMESLIHHFKLVTEGFAVPAGQVAVSVEAPRGELLVHAVSDG 378
Query: 349 GNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G +PYR R P + +LQA+ +C+G ++DV A + S+D V G VDR
Sbjct: 379 GTRPYRVHFRDPSFTNLQAVAAMCEGGMVSDVIAAVASIDPVMGGVDR 426
>gi|237757075|ref|ZP_04585518.1| NADH-quinone oxidoreductase, subunit c/d [Sulfurihydrogenibium
yellowstonense SS-5]
gi|237690764|gb|EEP59929.1| NADH-quinone oxidoreductase, subunit c/d [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 580
Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats.
Identities = 169/393 (43%), Positives = 251/393 (63%), Gaps = 1/393 (0%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K +N+GP HP HG + + +L+GE + D +G LHRG EKL E T+ Q +P
Sbjct: 189 SKKNQIVLNWGPLHPGTHGTIWFLFDLEGETIRECDIILGQLHRGIEKLSEDLTYTQIIP 248
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY++ + AY AVEKLLG++ P + + IR + +E+ RI SHLL + T A+D+
Sbjct: 249 YTDRMDYISALCSNIAYVNAVEKLLGVQPPEKAKWIRTMLAELQRINSHLLWLGTTALDL 308
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALT L+ F EREKLM E +G R+++++ R GGV D+P + ++ I + FPS
Sbjct: 309 GALTMFLYTFREREKLMDIIEGIAGIRLNSSFLRIGGVRYDLPEDALDVIKHFIKDFPSR 368
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ D DLLT NRI+ +RN ++G V ED + +G +GVM + +G +D+R QP + Y+++
Sbjct: 369 VKDYEDLLTKNRIWIRRNKDVGIVSKEDVYQYGLTGVMAKSAGVPYDIRYIQPTDAYADV 428
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DF+IP+G GD YDRYL+RM EM++S++I++QCV++L V+ +P V P +
Sbjct: 429 DFEIPLGTVGDAYDRYLIRMEEMKQSLRIVQQCVDKLEKLKNDKYVATENP-YVLPTLNE 487
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ +S+ES++ F L G PVGEVY + E P+GE G Y++S G KPYR +IR+ +
Sbjct: 488 VYQSIESMVKDFTLRIYGEKAPVGEVYVSGENPRGELGFYIVSKGEGKPYRLRIRSGAFY 547
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ L KG +AD A+LGS+D V GE DR
Sbjct: 548 NLQIFPELIKGRTVADAVALLGSIDPVVGETDR 580
>gi|298566753|gb|ADI86497.1| NADH-plastoquinone oxidoreductase subunit 7 [Brylkinia caudata]
Length = 393
Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats.
Identities = 167/393 (42%), Positives = 224/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E ++ +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRSIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVILLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + EDA WG SG M+R SG WDLRK YE Y++
Sbjct: 186 IVEYQQLITQNPIFLERVEGVGFISGEDAVNWGLSGPMLRASGIQWDLRKVDLYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRVGEMRESIKIIQQAVEKIPG----GPYENLEVRRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YLI D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPYFELSKQELYVRVEAPKGELGIYLIGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|298566785|gb|ADI86513.1| NADH-plastoquinone oxidoreductase subunit 7 [Poa alpina]
Length = 393
Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats.
Identities = 167/393 (42%), Positives = 225/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P +E +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIEKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YE Y++
Sbjct: 186 IVEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDLYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + ++
Sbjct: 246 DWKVQWQKEGDSLARYLVRISEMRESIKIIQQAVEKIPG----GPYENLEVRRFKKEKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|242910155|ref|YP_002970701.1| NADH-plastoquinone oxidoreductase subunit 7 [Alsophila spinulosa]
gi|218454824|gb|ACK77161.1| NADH-plastoquinone oxidoreductase subunit 7 [Alsophila spinulosa]
Length = 394
Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats.
Identities = 171/396 (43%), Positives = 229/396 (57%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M K+ T++ GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T LQ
Sbjct: 3 MPLKEIDPVTVSMGPHHPSMHGVLRLIVTLDGENVVDCEPILGYLHRGMEKIAENRTILQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E A EKL I++P R IRV+ E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEAVTVNAPEKLANIQVPGRASYIRVIMLELSRIASHLLWLGPFL 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
DVGA TP + F ERE + +E A+G RM YFR GGV D+P V+ +C
Sbjct: 123 ADVGAQTPFFYIFREREMIYDLFEAATGMRMMHNYFRIGGVAADLPYGWVDKCLDFCHYC 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+++ L+T N IF +R IG + E+A WG SG ++R SG WDLRK YECY
Sbjct: 183 LPKIHEYERLITKNPIFLRRVRGIGFISREEAINWGLSGPVLRASGVQWDLRKIDHYECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
LD+ I GD RYLVR+ EM+ES+KII+Q + L G GP + + +
Sbjct: 243 DNLDWQIQWQTEGDSLARYLVRISEMKESIKIIKQALKLLPG----GPYENLEGRRFNQQ 298
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ +++ + + K + P E Y VEAPKGE GV+LI D P+R KIR P
Sbjct: 299 QGEVEWNDFNYQFVGKKSSPTLKSPKQEHYVRVEAPKGELGVFLIGDDSVFPWRWKIRPP 358
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L KG +LAD++ ILGS+DI+ GEVDR
Sbjct: 359 GFTNLQILSQLIKGMKLADITTILGSIDIIMGEVDR 394
>gi|158336469|ref|YP_001517643.1| NAD(P)H-quinone oxidoreductase subunit H [Acaryochloris marina
MBIC11017]
gi|229891142|sp|B0BZ27|NDHH_ACAM1 RecName: Full=NAD(P)H-quinone oxidoreductase subunit H; AltName:
Full=NAD(P)H dehydrogenase subunit H; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H;
AltName: Full=NDH-1 subunit H; Short=NDH-H
gi|158306710|gb|ABW28327.1| proton-translocating NAD(P)H-quinone oxidoreductase, chain H
[Acaryochloris marina MBIC11017]
Length = 394
Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats.
Identities = 170/395 (43%), Positives = 228/395 (57%), Gaps = 6/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ IN GPQHP+ HGVLRL++ LDGE V +P IG LHRG EK+ E+++ + V
Sbjct: 5 ETRTEPMVINMGPQHPSMHGVLRLMVTLDGENVVDCEPVIGYLHRGMEKIAESRSNIMFV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R DY A M E A E+L I++P R IRV+ E+ RI +HLL + D
Sbjct: 65 PYVSRWDYAAGMFNEAITVNAPERLADIKVPKRASYIRVIMLELNRIANHLLWLGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRM-HAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E SG R + YFR GGV D+ V +CD F
Sbjct: 125 VGAQTPFFYIFREREMIYDLFEAVSGMRFINNNYFRMGGVAADLTYGWVSKCLDFCDYFL 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF +R +GT+ EDA WG SG M+RGSG WDLR+ YECY
Sbjct: 185 PKVDEYERLITNNPIFIRRLDGVGTISREDAINWGLSGPMLRGSGVKWDLRRVDHYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+++ GDC RY +R+ EMRESVKII+Q + L G GP + K + R
Sbjct: 245 DFDWEVQWETKGDCLARYYLRIREMRESVKIIKQALEHLPG----GPYENLEAKRMMEGR 300
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
S E K + +P GE+YA VE KGE G+YLI D P+R KIRAP
Sbjct: 301 KSEWNSFE-YQFLGKKLAPTFKIPEGELYARVETGKGELGIYLIGDENVFPWRWKIRAPD 359
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +LQ + L KG ++AD+ AILGS+D++ G VDR
Sbjct: 360 FNNLQVLPQLLKGMKVADIVAILGSIDVIMGSVDR 394
>gi|77917822|ref|YP_355637.1| trifunctional NADH dehydrogenase I subunit B/C/D [Pelobacter
carbinolicus DSM 2380]
gi|123575097|sp|Q3A825|NUBCD_PELCD RecName: Full=NADH-quinone oxidoreductase subunit B/C/D; AltName:
Full=NADH dehydrogenase I subunit B/C/D; AltName:
Full=NDH-1 subunit B/C/D
gi|77543905|gb|ABA87467.1| NADH dehydrogenase subunit B / NADH dehydrogenase subunit D / NADH
dehydrogenase subunit C [Pelobacter carbinolicus DSM
2380]
Length = 794
Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats.
Identities = 175/387 (45%), Positives = 236/387 (60%), Gaps = 4/387 (1%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+N GPQHP HG+LR+IL+L GE + +D IG HRG EK+ E + + Q +PY DR+D
Sbjct: 412 ILNLGPQHPGTHGILRVILQLAGEEIVDLDSEIGYHHRGAEKIAERQHWNQYIPYTDRID 471
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
Y+A AY +VE L G+E+P R + IRVL SE+ RI SHL+ + T A DVGA+TP
Sbjct: 472 YLAGSLNNLAYLYSVETLCGVEVPPRARYIRVLLSELFRIASHLVWLGTFAHDVGAMTPV 531
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ F+ REK+ E +G RMH A+FR GGV D+P + + + F + +++
Sbjct: 532 FYAFDSREKIFDIIELITGGRMHPAWFRIGGVPDDLPDGWLAAVEAFTRDFEARIDEFDR 591
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
LLTG IF+ R IGTV + A GFSG +R +G AWDLRKS PY Y E DFD+
Sbjct: 592 LLTGGPIFRARTEGIGTVSRQQAVELGFSGPNLRATGLAWDLRKSMPYGGYDEFDFDVVT 651
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GDC+ RYLVR+ E+R+S++I+RQ + G + + PKR D + +E
Sbjct: 652 AGGGDCFARYLVRLGELRQSLRIVRQAAEGM----PQGRWISDQYRYAYPKREDGLQDIE 707
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
SLIHHF + G P GE Y A+E+ KGE G Y +SDGG YR +IR P + HLQA+
Sbjct: 708 SLIHHFLHVSRGPAAPRGECYRAIESSKGECGYYAVSDGGTGAYRLRIRTPSFPHLQALP 767
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVDR 396
L +G +ADV ILGSLD V ++DR
Sbjct: 768 QLSRGRLVADVITILGSLDYVLADLDR 794
>gi|298566687|gb|ADI86464.1| NADH-plastoquinone oxidoreductase subunit 7 [Leersia virginica]
Length = 393
Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats.
Identities = 166/393 (42%), Positives = 224/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTTIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPKRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLQG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YE Y++
Sbjct: 186 VIEYQHLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDLYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRIGEMRESIKIIQQAVEKIPG----GPYENLEVRRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|254433721|ref|ZP_05047229.1| NADH dehydrogenase, subunit C subfamily, putative [Nitrosococcus
oceani AFC27]
gi|207090054|gb|EDZ67325.1| NADH dehydrogenase, subunit C subfamily, putative [Nitrosococcus
oceani AFC27]
Length = 582
Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats.
Identities = 159/391 (40%), Positives = 227/391 (58%), Gaps = 4/391 (1%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ +N GP HP+ HGV R++L+LDGE + P IG HRG EK+ E +++ +PY
Sbjct: 196 TDFMFLNLGPNHPSVHGVFRIVLQLDGEEIVDAVPDIGYHHRGAEKMGERQSWHTYIPYT 255
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DR+DY+ + Y LAVE+L GI++P R ++IRV+ +E+ RI SHL+ T A DVG
Sbjct: 256 DRIDYLGGVMNNLPYVLAVEQLAGIQVPERVKVIRVMLAELFRIASHLVFYGTFAQDVGQ 315
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
L+P + F +RE++ E G RMH +FR GGV QD+P + I + P L
Sbjct: 316 LSPVFYMFTDRERVFDIIEAICGGRMHPEWFRIGGVAQDLPRGWDDLIRDFLRYLPPRLA 375
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ NRI K+R +G+ + +A WG +G +R G WD RK +PY Y + F
Sbjct: 376 KYDKIAMNNRILKKRTQGVGSYTIAEAMEWGVTGPGLRACGLEWDFRKQRPYSGYEQFQF 435
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
DIP+ +HGDCYDR VR+ EMR+S++II QC+N + G A P PP++
Sbjct: 436 DIPVAQHGDCYDRCWVRIEEMRQSLRIIEQCLNHMPA----GSYKADHPLTTPPRKERTM 491
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
+E+LI HF + G +P GE +EA KG YLISDG +PYR +IR P + HL
Sbjct: 492 HDIETLISHFLSVSWGPVIPAGEACVGIEATKGNNSYYLISDGHTQPYRVRIRTPSFPHL 551
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Q + + +G + D+ A LGS+D V +VDR
Sbjct: 552 QMIPLISRGSMVPDLIATLGSIDFVMADVDR 582
>gi|108796693|ref|YP_636523.1| NADH dehydrogenase subunit 7 [Zygnema circumcarinatum]
gi|122211733|sp|Q32RK3|NDHH_ZYGCR RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|61393677|gb|AAX45819.1| 49 kDa subunit of NADH-plastoquinone oxidoreductase [Zygnema
circumcarinatum]
Length = 393
Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats.
Identities = 171/395 (43%), Positives = 228/395 (57%), Gaps = 7/395 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K+ ++ GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E++T LQ +P
Sbjct: 4 TKADPMVVSMGPHHPSMHGVLRLIVTLDGENVADCEPVLGYLHRGMEKIAESRTTLQYLP 63
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E+L I++P R IR++ E+ RI SHLL + D+
Sbjct: 64 YVTRWDYLATMFTEAITVNAPERLANIQVPKRASYIRMIMLELSRIASHLLWLGPFMADI 123
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + ERE + +E A+G RM YFR GGV D+P V+ +CD F
Sbjct: 124 GAQTPFFYILREREMIYDLFEAATGMRMMHNYFRIGGVAVDLPYGWVDKCLDFCDYFLPK 183
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+N+ L+T N IF +R IG + E+A WG SG M+R SG WDLRK YECY EL
Sbjct: 184 VNEYERLITRNPIFLKRVEGIGVIGREEAINWGLSGPMLRASGVQWDLRKVDRYECYHEL 243
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + GDC+ RYLVR+ EMRESV II+Q + + G GP + + + A
Sbjct: 244 DWQVEWQSGGDCFARYLVRIGEMRESVTIIQQALKAIPG----GPYENLEARRMA-SMAQ 298
Query: 304 MKRSMESLIHHF--KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ F K + + +P E Y VEAPKGE GV+LI D P+R KIR PG
Sbjct: 299 KNSQWNDFEYQFVSKKPSPTFKLPKQEHYVRVEAPKGELGVFLIGDDSMFPWRWKIRPPG 358
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +LQ + L G +LAD+ ILGS+DI+ GEVDR
Sbjct: 359 FINLQILPQLLIGMKLADIMTILGSIDIIMGEVDR 393
>gi|148260122|ref|YP_001234249.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Acidiphilium cryptum JF-5]
gi|218528031|sp|A5FXJ8|NUOCD_ACICJ RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|146401803|gb|ABQ30330.1| NADH dehydrogenase subunit C / NADH dehydrogenase subunit D
[Acidiphilium cryptum JF-5]
Length = 592
Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats.
Identities = 157/393 (39%), Positives = 234/393 (59%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ S +N GP HP+ HGV R+IL+L+GE + P IG HRG EK+ E +++ +P
Sbjct: 204 ENSDFMFLNLGPNHPSVHGVFRIILQLEGEEIVDAVPEIGFHHRGAEKMAERQSWHTYIP 263
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ + Y +AVE+L GIE+P R Q+IR++ +E+ RI SHL+ T + DV
Sbjct: 264 YTDRIDYLGGVMNNFPYVMAVERLAGIEVPSRAQMIRIMLAELFRIASHLVFYGTMSQDV 323
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G L+P + F +RE++ E G RMH A+FR GGV D+P I +
Sbjct: 324 GQLSPVFYMFSDRERVFQIIEAICGFRMHPAWFRIGGVAADLPQGWDRMIRDYLGYQSKR 383
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L++ L+ NR+FK R + +G LE+A WG +G +R G WD R+ +PY Y +L
Sbjct: 384 LDEYDKLVMRNRLFKARTIGVGAYTLEEALDWGVTGPGLRACGLGWDYRRQRPYSGYDQL 443
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FDIPI +GDCYDR +V + E+R+S++IIRQC++ + GP + PP +
Sbjct: 444 EFDIPICHNGDCYDRVVVHIEEIRQSLRIIRQCLDNM----PPGPYKSDHRLTTPPLKER 499
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ +E+LI HF + G +P GE ++EA KG G YL++DG YR +IR P +
Sbjct: 500 TMQDIETLITHFLNVSWGPVLPPGEAMVSIEATKGINGYYLVADGDTVSYRTRIRTPSFP 559
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ + + +G +AD+ AI+GS+D V +VDR
Sbjct: 560 HLQMIPLISRGAYVADLIAIIGSIDFVMADVDR 592
>gi|188996813|ref|YP_001931064.1| NADH-ubiquinone oxidoreductase chain 49kDa [Sulfurihydrogenibium
sp. YO3AOP1]
gi|188931880|gb|ACD66510.1| NADH-ubiquinone oxidoreductase chain 49kDa [Sulfurihydrogenibium
sp. YO3AOP1]
Length = 580
Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats.
Identities = 167/393 (42%), Positives = 247/393 (62%), Gaps = 1/393 (0%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K +N+GP HP HG + + +L+GE + D +G LHRG EKL E T+ Q +P
Sbjct: 189 SKKNQIVLNWGPLHPGTHGTIWFLFDLEGETIRECDIILGQLHRGIEKLSEDLTYTQIIP 248
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY++ + AY A+EKL G++ P + + IR + +E+ RI SHLL + T A+D+
Sbjct: 249 YTDRMDYISALCSNIAYVNAIEKLFGVQPPEKAKWIRTMLAELQRINSHLLWLGTTALDL 308
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALT L+ F EREKLM E +G R+++++ R GG+ D+P ++ I + FPS
Sbjct: 309 GALTMFLYTFREREKLMDIIEGIAGIRLNSSFLRIGGIRYDLPEGALDVIKHFIKDFPSR 368
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ D DLLT NRI+ +RN ++G V ED + +G +GVM R +G +D+R QP + Y+++
Sbjct: 369 VKDYEDLLTKNRIWIRRNKDVGIVSKEDVYQYGLTGVMARSAGVPYDIRYIQPTDAYADV 428
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DF+IP+G GD YDRYL+RM EM++S++I++QCV +L V+ +P V P +
Sbjct: 429 DFEIPLGTVGDAYDRYLIRMEEMKQSLRIVQQCVEKLEKLKNDKYVATENP-YVLPTLNE 487
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ S+ES++ F L G PVGEVY + E P+GE G Y++S G KPYR +IR+ +
Sbjct: 488 VYGSIESMVKDFTLRIYGEKAPVGEVYVSGENPRGELGFYIVSKGEGKPYRLRIRSGAFY 547
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ L KG +AD A+LGS+D V GE DR
Sbjct: 548 NLQIFPELIKGRTVADAVALLGSIDPVVGETDR 580
>gi|289548151|ref|YP_003473139.1| NADH dehydrogenase I, D subunit [Thermocrinis albus DSM 14484]
gi|289181768|gb|ADC89012.1| NADH dehydrogenase I, D subunit [Thermocrinis albus DSM 14484]
Length = 585
Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats.
Identities = 168/393 (42%), Positives = 246/393 (62%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+K +N+GP HP HG + + +LDGE V + D +G LHRG EK+ E + Q +P
Sbjct: 193 QKKAQLVLNWGPLHPGTHGTIWFLFDLDGEQVVQCDIILGQLHRGMEKIAENLYYFQFLP 252
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY++ + E AY AVEKLL +E+P + + IR +++E+ RI SHLL + T A+D+
Sbjct: 253 YTDRMDYISAICNELAYVTAVEKLLKVEVPEKARYIRTMFAELQRINSHLLWLGTGALDL 312
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALT L+ F EREK+M E +G R+ +A+ R GGVH D+ ++ + + FP+
Sbjct: 313 GALTVFLYAFREREKIMDIIEGNAGIRLTSAFLRIGGVHYDLAEGTLDVVKAFVKDFPNR 372
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L + LLT NRI+ +R +G + ED + +G +G + RGSG +D+RK +PY Y E+
Sbjct: 373 LREYHQLLTRNRIWLRRTKEVGIITREDVFNYGLTGPVARGSGVPYDIRKLEPYAAYDEV 432
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DFDIP+G+ GD YDRYLVRM EM +S++I+ QCV +L K P +D V + +
Sbjct: 433 DFDIPVGEVGDVYDRYLVRMEEMWQSLRIVEQCVQKLEKLPKSAPYLNTDHPAVMAPKEE 492
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ ++ES++ +F + G P GEVYA+ E P+GE G Y+ S GG+KPYR +IR+
Sbjct: 493 VFNALESMVKNFHIVVHGEKAPPGEVYASGENPRGELGFYIYSKGGSKPYRLRIRSGALY 552
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L L +G +AD A+LGSLD V GE DR
Sbjct: 553 NLSIFPKLIEGRTIADAIALLGSLDPVVGETDR 585
>gi|183981495|ref|YP_001849786.1| NADH dehydrogenase I (chain D) NuoD (NADH- ubiquinone
oxidoreductase chain D) [Mycobacterium marinum M]
gi|218534424|sp|B2HGE5|NUOD_MYCMM RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|183174821|gb|ACC39931.1| NADH dehydrogenase I (chain D) NuoD (NADH- ubiquinone
oxidoreductase chain D) [Mycobacterium marinum M]
Length = 432
Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats.
Identities = 175/409 (42%), Positives = 241/409 (58%), Gaps = 22/409 (5%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+N GPQHP+ HGVLRLILE++GE V IG LH G EK +E + + Q V +
Sbjct: 28 GERIVVNMGPQHPSTHGVLRLILEIEGETVTEARCGIGYLHTGIEKNLEYRYWTQGVTFV 87
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
R+DY++P E AY L VEKLLGI EIP R +IRV+ E+ RI SHL+ + T M++
Sbjct: 88 TRMDYLSPFFNETAYCLGVEKLLGITDEIPERVNVIRVMMMELNRISSHLVALATGGMEL 147
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+TP GF RE ++ +E +G RM++AY RPGGV QD+PP+ +I
Sbjct: 148 GAMTPMFVGFRAREIILSLFESITGLRMNSAYIRPGGVAQDLPPDGPTEIAKAIADLRQP 207
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L ++ DLL N I+K R ++G + L G +G ++R +G DLRKS+PY Y
Sbjct: 208 LREMGDLLNENAIWKARTQDVGYLDLAGCMALGITGPILRSTGLPHDLRKSEPYCGYENY 267
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK--- 300
+FD+ D Y RY++R+ EM ES+KI+ QC++RL GP D K+ P
Sbjct: 268 EFDVITADGCDAYGRYMIRVKEMWESIKIVEQCLDRLR----PGPTMIEDRKLAWPADLK 323
Query: 301 -------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISD 347
M SME+LIHHFKL TEG VP G+VY AVE+P+GE GV+++SD
Sbjct: 324 VGPDGMGNSPEHIAKIMGSSMEALIHHFKLVTEGIRVPAGQVYVAVESPRGELGVHMVSD 383
Query: 348 GGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GG +PYR R P + +LQA+ + +G +AD+ + S+D V G VDR
Sbjct: 384 GGTRPYRVHYRDPSFTNLQAVAAMSEGGMVADLITAVASIDPVMGGVDR 432
>gi|300114495|ref|YP_003761070.1| NADH dehydrogenase I subunit D [Nitrosococcus watsonii C-113]
gi|299540432|gb|ADJ28749.1| NADH dehydrogenase I, D subunit [Nitrosococcus watsonii C-113]
Length = 592
Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats.
Identities = 154/391 (39%), Positives = 230/391 (58%), Gaps = 4/391 (1%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ +N GP HP+ HGV R++L+LDGE + P IG HRG EK+ E +++ +PY
Sbjct: 206 TDFMFLNLGPNHPSVHGVFRIVLQLDGEEIVDAVPDIGYHHRGAEKMGERQSWHTYIPYT 265
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DR+DY+ + Y LAVE+L I++P R ++IR++ +E+ RI SHL+ T A D+G
Sbjct: 266 DRIDYLGGVMNNLPYVLAVEQLADIQVPERVKVIRIMLAELFRIASHLVFYGTFAQDIGQ 325
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
++P + F +RE++ E G RMH +FR GGV QD+P I + FP L+
Sbjct: 326 MSPVFYMFTDRERVFDIIEAICGGRMHPEWFRIGGVAQDLPQGWDGLIRDFLHYFPPRLD 385
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
++ NRI K+R +G+ +++A WG +G +R G WD RK +PY Y + F
Sbjct: 386 QYDKIVMNNRILKKRTQGVGSYTVDEAIEWGVTGPGLRACGLEWDFRKQRPYSGYEQFQF 445
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
DIP +HGDCYDR VR+ EMR+S++II+QC++ + G A P PP++
Sbjct: 446 DIPTAQHGDCYDRCWVRVEEMRQSLRIIQQCLDHMPA----GAYKADHPLATPPRKERTM 501
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
+E+LI HF + G +P GE +EA KG YLISDG +PYR +IR P + HL
Sbjct: 502 HDIETLISHFLSVSWGPVIPAGEACVGIEATKGNNSYYLISDGHTQPYRVRIRTPSFPHL 561
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Q + F+ +G + D+ A++ S+D V +VDR
Sbjct: 562 QMIPFIIQGAMVPDLIALIASIDFVMADVDR 592
>gi|197294159|ref|YP_002149779.1| NADH-plastoquinone oxidoreductase subunit 7 [Cicer arietinum]
gi|218527766|sp|B5LMS0|NDHH_CICAR RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|197089847|gb|ACH41117.1| NADH-plastoquinone oxidoreductase subunit 7 [Cicer arietinum]
Length = 393
Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats.
Identities = 161/396 (40%), Positives = 226/396 (57%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 VPTTRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E E+L I++P R IRV+ E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE + +E A+G RM +FR GGV D+P ++ +C+ F
Sbjct: 123 ADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNFFRIGGVSADLPYGWIDKCFDFCNYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ + + L+T N IF +R +G + E+ WG SG M+R SG WDLRK YECY
Sbjct: 183 LTRVIEYQKLITRNPIFLERVEGVGIIGREEVINWGLSGPMLRASGIQWDLRKVDNYECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E D+++ K GD RYLVR+ EM ES+KII+Q + + G GP + + +
Sbjct: 243 EEFDWEVQWQKEGDSLARYLVRIGEMMESIKIIQQALEGIPG----GPYENLEIRSFDRE 298
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ E K + + +P E+Y VEAPKGE G++LI D P+R KIR P
Sbjct: 299 KEPEWNDFE-YRFIGKKSSPTFELPKQELYVRVEAPKGELGIFLIGDQNGFPWRWKIRPP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L K +LAD+ ILGS+DI+ GE+DR
Sbjct: 358 GFINLQILPQLVKRMKLADIMTILGSIDIIMGEIDR 393
>gi|108802698|ref|YP_636355.1| NADH dehydrogenase subunit 7 [Eucalyptus globulus subsp. globulus]
gi|122219158|sp|Q49KU2|NDHH_EUCGG RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|60460864|gb|AAX21084.1| NADH-plastoquinone oxidoreductase subunit 7 [Eucalyptus globulus
subsp. globulus]
Length = 393
Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats.
Identities = 169/396 (42%), Positives = 230/396 (58%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + +N GP HP+ HGVLRLIL LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 VTTTRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTVIQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E E+L I++P R IRV+ E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 123 ADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+A+++ L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY
Sbjct: 183 LTAVSEYQKLITRNPIFLERVEGVGIIGPEEAINWGLSGPMLRASGIQWDLRKVDHYECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
ELD++I K GD RYLVR+ EMRES+KII+Q + + G + + P+
Sbjct: 243 DELDWEIFWQKEGDSLARYLVRIGEMRESIKIIQQALEGIPGGPYENLETRCFARERDPE 302
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
D + S K + + +P E+Y VEAPKGE G++LI D P+R KIR P
Sbjct: 303 WNDFEYRFIS-----KKPSPTFELPKQELYVRVEAPKGELGIFLIGDQSGFPWRWKIRPP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 358 GFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|326402925|ref|YP_004283006.1| NADH-quinone oxidoreductase subunit C/D [Acidiphilium multivorum
AIU301]
gi|325049786|dbj|BAJ80124.1| NADH-quinone oxidoreductase subunit C/D [Acidiphilium multivorum
AIU301]
Length = 592
Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats.
Identities = 157/393 (39%), Positives = 234/393 (59%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ S +N GP HP+ HGV R+IL+L+GE + P IG HRG EK+ E +++ +P
Sbjct: 204 ENSDFMFLNLGPNHPSVHGVFRIILQLEGEEIVDAVPEIGFHHRGAEKMAERQSWHTYIP 263
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ + Y +AVE+L GIE+P R Q+IR++ +E+ RI SHL+ T + DV
Sbjct: 264 YTDRIDYLGGVMNNFPYVMAVERLAGIEVPSRAQMIRIMLAELFRIASHLVFYGTMSQDV 323
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G L+P + F +RE++ E G RMH A+FR GGV D+P I +
Sbjct: 324 GQLSPVFYMFSDRERVFQIIEAICGFRMHPAWFRIGGVAADLPQGWDRMIRDYLGYQSKR 383
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L++ L+ NR+FK R + +G LE+A WG +G +R G WD R+ +PY Y +L
Sbjct: 384 LDEYDKLVMRNRLFKARTIGVGAYTLEEALDWGVTGPGLRACGLGWDYRRQRPYSGYDQL 443
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FDIPI +GDCYDR +V + E+R+S++IIRQC++ + GP + PP +
Sbjct: 444 EFDIPICHNGDCYDRVVVHIEEIRQSLRIIRQCLDNM----PPGPYKSDHRLTTPPLKER 499
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ +E+LI HF + G +P GE ++EA KG G YL++DG YR +IR P +
Sbjct: 500 TMQDIETLITHFLNVSWGPVLPPGEAMVSIEATKGINGYYLVADGDTVSYRTRIRTPSFP 559
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ + + +G +AD+ AI+GS+D V +VDR
Sbjct: 560 HLQMIPLISRGAYVADLIAIIGSIDFVMADVDR 592
>gi|75909405|ref|YP_323701.1| NAD(P)H-quinone oxidoreductase subunit H [Anabaena variabilis ATCC
29413]
gi|123608959|sp|Q3M880|NDHH_ANAVT RecName: Full=NAD(P)H-quinone oxidoreductase subunit H; AltName:
Full=NAD(P)H dehydrogenase subunit H; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H;
AltName: Full=NDH-1 subunit H; Short=NDH-H
gi|75703130|gb|ABA22806.1| NADH dehydrogenase subunit D [Anabaena variabilis ATCC 29413]
Length = 394
Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats.
Identities = 168/395 (42%), Positives = 228/395 (57%), Gaps = 6/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +N GP HP+ HGVLRLI+ LDGE V +P IG LHRG EK+ E +T + V
Sbjct: 5 ETRTEPMVLNMGPHHPSMHGVLRLIVTLDGEDVVDCEPVIGYLHRGMEKIAENRTTVMYV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R DY A M E A EKL G+ +P R IRV+ E+ RI +HLL D
Sbjct: 65 PYVSRWDYAAGMFNEAVTVNAPEKLAGVAVPKRASYIRVIMLELNRIANHLLWFGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRM-HAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E A+G RM + YFR GGV D+P V+ +CD F
Sbjct: 125 VGAQTPFFYQFREREMIYDLWEAATGYRMVNNNYFRVGGVAADLPYGWVDKCLEFCDYFL 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R IGT+ E+A WG SG M+R SG WDLRK YE Y
Sbjct: 185 PVVDEYEKLVTNNPIFRRRIEGIGTISREEAINWGLSGPMLRASGVKWDLRKVDHYESYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+D+ GDC RY VRM EMRESVKII+Q + L G GP + K + +
Sbjct: 245 DFDWDVQWETAGDCLARYTVRMREMRESVKIIKQAIKGLPG----GPYENLEAKRLIAGK 300
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ + + K + + +P GE+YA VE+ KGE G+YLI D P+R KIR
Sbjct: 301 KSEWDAFD-YQYIGKKVSPTFKMPKGEIYARVESGKGELGIYLIGDDNVFPWRWKIRPAD 359
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +LQ + L +G ++AD+ ILGS+D++ G VDR
Sbjct: 360 FNNLQILPHLLRGMKVADIVVILGSIDVIMGSVDR 394
>gi|298566689|gb|ADI86465.1| NADH-plastoquinone oxidoreductase subunit 7 [Streptogyna americana]
Length = 393
Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats.
Identities = 166/393 (42%), Positives = 223/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIKIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITQNPIFLERVEGVGYISGEEAVNWGLSGPMLRASGIQWDLRKVDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRESVKII+Q V ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRIGEMRESVKIIQQAVEKIPG----GPYENLEVRRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLXPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GE DR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEXDR 393
>gi|298566633|gb|ADI86437.1| NADH-plastoquinone oxidoreductase subunit 7 [Joinvillea
gaudichaudiana]
Length = 393
Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats.
Identities = 163/393 (41%), Positives = 223/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I++P R IR + E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPELLENIQVPQRASYIRAIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCFDFCDYFLQG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N +F +R +G + E+A WG SG M+R SG WDLRK YECY++
Sbjct: 186 VVEYQKLITRNPVFLERVEGVGFISGEEAANWGLSGPMLRASGIQWDLRKVDHYECYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+++ K GD RYLVR+ EMRES+KII+Q V + G GP + + +
Sbjct: 246 DWEVQWQKEGDSLARYLVRIGEMRESIKIIQQAVEGIPG----GPYENLEVRRFNRAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLSKKPSPNFELSKQELYVRVEAPKGELGIYLVGDNSVFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|295065785|ref|YP_003587725.1| NADH dehydrogenase subunit 7 [Anomochloa marantoidea]
gi|251765309|gb|ACT15463.1| NADH dehydrogenase subunit 7 [Anomochloa marantoidea]
Length = 393
Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats.
Identities = 164/393 (41%), Positives = 224/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQVPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N +F +R IG + E+A WG SG M+R SG WDLRK YE Y++
Sbjct: 186 IVEYQKLITHNPVFLERVEGIGFISGEEATNWGLSGPMLRASGIKWDLRKVDLYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+++ K GD RYLVR+ EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWEVQWQKEGDSLARYLVRIGEMRESIKIIQQAVEKIPG----GPYENLEVRRFNRAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDNSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|118617949|ref|YP_906281.1| NADH dehydrogenase subunit D [Mycobacterium ulcerans Agy99]
gi|218534429|sp|A0PR41|NUOD_MYCUA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|118570059|gb|ABL04810.1| NADH dehydrogenase I (chain D) NuoD (NADH- ubiquinone
oxidoreductase chain D) [Mycobacterium ulcerans Agy99]
Length = 432
Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats.
Identities = 174/409 (42%), Positives = 240/409 (58%), Gaps = 22/409 (5%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+N GPQHP+ HGVLRLILE++GE V IG LH G EK +E + + Q V +
Sbjct: 28 GERIVVNMGPQHPSTHGVLRLILEIEGETVTEARCGIGYLHTGIEKNLEYRYWTQGVTFV 87
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
R+DY++P E AY L VEKLLGI EIP R +IRV+ E+ RI SHL+ + M++
Sbjct: 88 TRMDYLSPFFNETAYCLGVEKLLGITDEIPERVNVIRVMMMELNRISSHLVALAAGGMEL 147
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+TP GF RE ++ +E +G RM++AY RPGGV QD+PP+ +I
Sbjct: 148 GAMTPMFVGFRAREIILSLFESITGLRMNSAYIRPGGVAQDLPPDRPTEIAKAIADLRQP 207
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L ++ DLL N I+K R ++G + L G +G ++R +G DLRKS+PY Y
Sbjct: 208 LREMGDLLNENAIWKARTQDVGYLDLAGCMALGITGPILRSTGLPHDLRKSEPYCGYENY 267
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK--- 300
+FD+ D Y RY++R+ EM ES+KI+ QC++RL GP D K+ P
Sbjct: 268 EFDVITADGCDAYGRYMIRVKEMWESIKIVEQCLDRLR----PGPTMIEDRKLAWPADLK 323
Query: 301 -------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISD 347
M SME+LIHHFKL TEG VP G+VY AVE+P+GE GV+++SD
Sbjct: 324 VGPDGMGNSPEHIAKIMGSSMEALIHHFKLVTEGIRVPAGQVYVAVESPRGELGVHMVSD 383
Query: 348 GGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GG +PYR R P + +LQA+ + +G +AD+ + S+D V G VDR
Sbjct: 384 GGTRPYRVHYRDPSFTNLQAVAAMSEGGMVADLITAVASIDPVMGGVDR 432
>gi|147669453|ref|YP_001214271.1| NADH dehydrogenase I, D subunit [Dehalococcoides sp. BAV1]
gi|229891388|sp|A5FQY6|NUOD_DEHSB RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|146270401|gb|ABQ17393.1| NADH dehydrogenase subunit D [Dehalococcoides sp. BAV1]
Length = 367
Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats.
Identities = 165/393 (41%), Positives = 239/393 (60%), Gaps = 30/393 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K+ +F +N GPQHP+ HGV RL + LDGE++ ++P G LHRG EKL E +T+LQ +P+
Sbjct: 4 KTENFILNIGPQHPSTHGVFRLRIVLDGEVITDLEPVFGYLHRGIEKLAEGRTYLQDIPF 63
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDY+ M HAY +AVEKL GI +P R + IRV+ E+ RI SHL + D+G
Sbjct: 64 TDRLDYLGSMTNNHAYVMAVEKLAGITVPERAEYIRVILDELQRIASHLAGLGFFLNDLG 123
Query: 125 AL-TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
AL TP L+ F EREK++ ++ SG R++ Y+R GG QD+P E + + D+ P
Sbjct: 124 ALQTPLLYMFREREKIVELFDMCSGQRLNYNYYRFGGFVQDLPEEFLPALKILLDTLPGF 183
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ L++ N I R +G +K + A +G ++R SG WD+R++ PY Y+
Sbjct: 184 IDEYEQLISTNEIVLIRTKGVGVLKRDLAINSSAAGPVLRASGINWDIRRNDPYSIYNRF 243
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FDIPI K+GD YDRY++R++EMR+SV+I+RQ V L G + PK++
Sbjct: 244 EFDIPIAKNGDTYDRYMIRILEMRQSVRILRQAVKDL----PEGEIMGKAPKLL------ 293
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
P GEVY+ +E PKGE G YL+SDG +KPYR ++R P
Sbjct: 294 -------------------KPPAGEVYSRIEGPKGELGFYLVSDGTDKPYRWRVRPPCLL 334
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L A++ + G ++AD+ AI GS+DIV GEVDR
Sbjct: 335 NLSALKDMVVGWKVADLMAIFGSIDIVMGEVDR 367
>gi|290489818|gb|ADD31316.1| NADH-plastoquinone oxidoreductase subunit 7 protein [Bulnesia
arborea]
Length = 394
Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats.
Identities = 167/396 (42%), Positives = 225/396 (56%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + IN GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 IPATRKDLMIINMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E E+L I+IP R IRV+ E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEAITVNGPEQLGNIQIPKRASYIRVIMLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 123 ADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+++ L+T N IF +R +G + E+A WG SG M+R SG WDLRK YE Y
Sbjct: 183 SKGISEYKKLITRNPIFLERVEGVGIIGEEEAINWGLSGPMLRASGIKWDLRKVDHYESY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E D+++ K GD RYLVR+ EM ES+KII+Q + + G GP + + K
Sbjct: 243 DEFDWEVQWQKEGDSLARYLVRISEMAESIKIIQQALEGIPG----GPYENLETRCFDKK 298
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R K K + + +P E+Y VEAPKGE G++LI D P+R KIR P
Sbjct: 299 RGPTKWGDFEYRFISKKPSPTFELPKQELYVRVEAPKGELGIFLIGDQSGFPWRWKIRPP 358
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 359 GFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 394
>gi|309322500|ref|YP_003934013.1| NADH-plastoquinone oxidoreductase subunit 7 [Eucalyptus grandis]
gi|308223334|gb|ADO23642.1| NADH-plastoquinone oxidoreductase subunit 7 [Eucalyptus grandis]
Length = 393
Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats.
Identities = 169/396 (42%), Positives = 230/396 (58%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + +N GP HP+ HGVLRLIL LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 VTTTRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTVIQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E E+L I++P R IRV+ E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 123 ADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+A+++ L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY
Sbjct: 183 LTAVSEYQKLITRNPIFLERVEGVGIIGPEEAINWGLSGPMLRASGIQWDLRKVDHYECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
ELD++I K GD RYLVR+ EMRES+KII+Q + + G + + P+
Sbjct: 243 DELDWEIHWQKEGDSLARYLVRIGEMRESIKIIQQALEGIPGGPYENLETRCFARERDPE 302
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
D + S K + + +P E+Y VEAPKGE G++LI D P+R KIR P
Sbjct: 303 WNDFEYRFIS-----KKPSPTFELPKQELYVRVEAPKGELGIFLIGDQSGFPWRWKIRPP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 358 GFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|239905979|ref|YP_002952718.1| NADH-quinone oxidoreductase chain B/C/D [Desulfovibrio magneticus
RS-1]
gi|239795843|dbj|BAH74832.1| NADH-quinone oxidoreductase chain B/C/D [Desulfovibrio magneticus
RS-1]
Length = 793
Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats.
Identities = 155/395 (39%), Positives = 236/395 (59%), Gaps = 4/395 (1%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
D+ K + +NFGP H A HG++R ++ L GE ++ + IG HRG EK+ E +T+ Q
Sbjct: 403 DRAKDGDYLLNFGPHHYATHGIIRFVMALRGERIKAMGIDIGYHHRGVEKIGERQTWHQF 462
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+PY DR+DY++ + +Y AVEKL GIE+P R RV+ SE+ R+ +HL+ T
Sbjct: 463 IPYTDRVDYLSGIANNLSYVTAVEKLAGIEVPPRAAYARVMLSELFRLSNHLMYFGTFLQ 522
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D+G ++P + ERE ++ E +G R+H ++ R GG+ D+P E + + FP
Sbjct: 523 DLGMMSPIFYALREREMVLDIIETVTGGRLHPSWLRLGGLAADLPEGWKEQVEAFITIFP 582
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
L + +T N I K R +G + +A G +G +R +G AWD RK+ PY Y+
Sbjct: 583 GRLKEYHAGVTNNPIVKARTRGVGGITAAEAVDRGVTGPNLRAAGVAWDRRKAMPYGAYA 642
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ DFD+P ++GDCYDRYLVRM EMRES++II Q ++ G ++D + P++
Sbjct: 643 DFDFDVPTRQNGDCYDRYLVRMDEMRESLRIIEQAAAKMPD----GRYLSADSRYCLPQK 698
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +ESLIHHF T G +P G YAA EAP+GE G +++SDGG YR +IR PG
Sbjct: 699 EAALKDIESLIHHFVNVTRGPRLPSGMAYAATEAPRGEQGYFVVSDGGCHAYRMRIRTPG 758
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+A++QA+ + +G +AD A+L S D + ++DR
Sbjct: 759 FANVQALPHIIEGLSIADCVAVLASYDYILPDIDR 793
>gi|114329713|ref|YP_740533.1| NADH-plastoquinone oxidoreductase subunit 7 [Citrus sinensis]
gi|122166135|sp|Q09MC0|NDHH_CITSI RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|113952679|gb|ABI49077.1| NADH-plastoquinone oxidoreductase subunit 7 [Citrus sinensis]
Length = 395
Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats.
Identities = 167/394 (42%), Positives = 226/394 (57%), Gaps = 5/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+K+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +
Sbjct: 7 EKEKEFMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYL 66
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R DY+A M E E+L I +P R IRV+ E+ RI SHLL + D
Sbjct: 67 PYVTRWDYLATMFTEAITVNGPEQLGNIRVPKRASYIRVIMLELSRIASHLLWLGPFMAD 126
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F +
Sbjct: 127 IGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLT 186
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY E
Sbjct: 187 GVAEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIEWDLRKVDHYECYDE 246
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
D+++ K GD RYLVR+ EM ESVKII+Q + + G + P+R
Sbjct: 247 FDWEVQWQKEGDSLARYLVRIGEMTESVKIIQQALEGIPGGPYENLEIRCFDRESDPERN 306
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
D + S K + + + E+YA VEAPKGE G++LI D P+R KIR PG+
Sbjct: 307 DFENRFIS-----KKPSPTFELTKQELYARVEAPKGELGIFLIGDQSGFPWRWKIRPPGF 361
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 362 INLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 395
>gi|298566791|gb|ADI86516.1| NADH-plastoquinone oxidoreductase subunit 7 [Molineriella laevis]
Length = 394
Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats.
Identities = 166/393 (42%), Positives = 223/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMRVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPELLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YE Y++
Sbjct: 186 IVEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDLYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q + ++ G GP + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRISEMRESIKIIQQAIEKIPG----GPYENLEVRRFKKATNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE GVYL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGVYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|298566797|gb|ADI86519.1| NADH-plastoquinone oxidoreductase subunit 7 [Cynosurus cristatus]
Length = 393
Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats.
Identities = 164/392 (41%), Positives = 222/392 (56%), Gaps = 5/392 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YE Y++
Sbjct: 186 IVEYQQLITKNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDLYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ K GD RYLVR+ EMRES+KII+Q + ++ G GP + + +
Sbjct: 246 DWKAQWQKEGDSLARYLVRISEMRESIKIIQQAIEKIPG----GPYENLEVRRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YKFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+LQ + L K +LAD+ ILGS+DI+ GEVD
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVD 392
>gi|37521941|ref|NP_925318.1| NAD(P)H-quinone oxidoreductase subunit H [Gloeobacter violaceus PCC
7421]
gi|81709612|sp|Q7NI12|NDHH1_GLOVI RecName: Full=NAD(P)H-quinone oxidoreductase subunit H 1; AltName:
Full=NAD(P)H dehydrogenase subunit H 1; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H 1;
AltName: Full=NDH-1 subunit H 1; Short=NDH-H 1
gi|35212940|dbj|BAC90313.1| NADH dehydrogenase subunit 7 [Gloeobacter violaceus PCC 7421]
Length = 393
Score = 389 bits (999), Expect = e-106, Method: Composition-based stats.
Identities = 168/396 (42%), Positives = 232/396 (58%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + ++ IN GP HP+ HGVLRLI+ LDGE V P +G LHR EK+ E++T +Q
Sbjct: 3 MLETRAERMVINLGPHHPSMHGVLRLIVTLDGENVVDCVPVLGYLHRSMEKIAESRTIIQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E A E+L G+++P R + IRV+ E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEAITVNAPEQLAGVQVPRRARYIRVIMLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA +P + F ERE + +E A+G RM YFR GGV D+P V+ +C+
Sbjct: 123 ADIGATSPFFYIFREREMIYDLFEAATGMRMMHNYFRVGGVAVDLPYGWVDKARDFCNYL 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P +++ L+T N IF+ R +G + EDA WG SG M+R SG WDLRK YE Y
Sbjct: 183 PPKIDEYERLITNNPIFRGRVEGLGYIGREDAINWGLSGPMLRASGVNWDLRKVDHYEIY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
ELD+++ GD RY+VR+ EMRESVK+IRQ +++L G ++
Sbjct: 243 DELDWNVAWDTGGDTLARYVVRIQEMRESVKMIRQALDQLPGGPYEN---LEAQRLSGGP 299
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+++ I K + + +P GE Y VEAPKGE GVYLI D P+R KIR P
Sbjct: 300 KSEWNGFDYQFI--GKKSSPTFKMPRGEHYVRVEAPKGELGVYLIGDDSTFPWRWKIRPP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +L + L +G +LAD+ AILGS+DI+ GEVDR
Sbjct: 358 GFINLAVLPKLVQGTKLADLMAILGSVDIIMGEVDR 393
>gi|13883046|gb|AAK47575.1| NADH dehydrogenase I, D subunit [Mycobacterium tuberculosis
CDC1551]
Length = 398
Score = 389 bits (999), Expect = e-106, Method: Composition-based stats.
Identities = 175/402 (43%), Positives = 241/402 (59%), Gaps = 22/402 (5%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
GPQHP+ HGVLRLILE++GE V IG LH G EK +E + + Q V + R+DY++
Sbjct: 1 MGPQHPSTHGVLRLILEIEGETVVEARCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLS 60
Query: 73 PMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
P E AY L VEKLLGI EIP R +IRVL E+ RI SHL+ + T M++GA+TP
Sbjct: 61 PFFNETAYCLGVEKLLGITDEIPERVNVIRVLMMELNRISSHLVALATGGMELGAMTPMF 120
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
GF RE ++ +E+ +G RM++AY RPGGV QD+PP +I L ++ +L
Sbjct: 121 VGFRAREIVLTLFEKITGLRMNSAYIRPGGVAQDLPPNAATEIAEALKQLRQPLREMGEL 180
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
L N I+K R +G + L G +G ++R +G DLRKS+PY Y +FD+
Sbjct: 181 LNENAIWKARTQGVGYLDLTGCMALGITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITD 240
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK---------- 300
D Y RY++R+ EM ES+KI+ QC+++L GP SD K+ P
Sbjct: 241 DSCDAYGRYMIRVKEMWESMKIVEQCLDKLR----PGPTMISDRKLAWPADLQVGPDGLG 296
Query: 301 ------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYR 354
M SME+LIHHFKL TEG VP G+VY AVE+P+GE GV+++SDGG +PYR
Sbjct: 297 NSPKHIAKIMGSSMEALIHHFKLVTEGIRVPAGQVYVAVESPRGELGVHMVSDGGTRPYR 356
Query: 355 CKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
R P + +LQ++ +C+G +AD+ A + S+D V G VDR
Sbjct: 357 VHYRDPSFTNLQSVAAMCEGGMVADLIAAVASIDPVMGGVDR 398
>gi|292492187|ref|YP_003527626.1| NADH dehydrogenase I, D subunit [Nitrosococcus halophilus Nc4]
gi|291580782|gb|ADE15239.1| NADH dehydrogenase I, D subunit [Nitrosococcus halophilus Nc4]
Length = 580
Score = 389 bits (999), Expect = e-106, Method: Composition-based stats.
Identities = 161/393 (40%), Positives = 231/393 (58%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ + +N GP HP+AHGV R++L+LDGE + P IG HRG EK+ E +++ +P
Sbjct: 192 RSTDFMFLNLGPNHPSAHGVFRIVLQLDGEEIVDAVPDIGYHHRGAEKMGERQSWHTYIP 251
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ + Y LAVE+L GI++P R Q+IRV+ +E+ RI SHL+ T A DV
Sbjct: 252 YTDRIDYLGGVMNNFPYVLAVEQLAGIQVPERAQIIRVMLAELFRIASHLVFYGTFAQDV 311
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G L+P + F +RE++ E G RMH ++FR GGV QD+P I + P
Sbjct: 312 GQLSPVFYMFTDRERVFDIIEAICGGRMHPSWFRIGGVAQDLPLGWKFLIRDFLHYLPPR 371
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L++ + NRI K+R +G + +A WG +G +R G WD RK +PY Y +
Sbjct: 372 LDEYDKIAMQNRILKKRTQGVGNYTVAEAIEWGVTGPGLRACGLEWDFRKQRPYSGYEQF 431
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
FDIPI +HGDCYDR VR+ EMR+S++II+QC++ + GP A P PP++
Sbjct: 432 QFDIPIAQHGDCYDRCWVRIEEMRQSLRIIQQCLDHMPA----GPYKADHPLTTPPRKEH 487
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+E+LI HF + G +P GE +EA KG YLISD PYR +IR P +
Sbjct: 488 SMHDIETLISHFLSVSWGPVIPAGEACVGIEATKGNNSYYLISDDHPHPYRVRIRTPSFP 547
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ + + +G ++D+ A LGS+D V +VDR
Sbjct: 548 HLQMIPLISRGEMVSDLIATLGSIDFVMADVDR 580
>gi|28202230|ref|NP_777470.1| NADH dehydrogenase subunit 7 [Anthoceros formosae]
gi|28144508|dbj|BAC55407.2| NADH dehydrogenase 49 kDa subunit [Anthoceros formosae]
Length = 393
Score = 389 bits (999), Expect = e-106, Method: Composition-based stats.
Identities = 170/395 (43%), Positives = 229/395 (57%), Gaps = 5/395 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M K+ T++ GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 MLAAKADPMTLSMGPHHPSMHGVLRLIVTLDGENVTDCEPILGYLHRGMEKIAENRTIVQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E A EKL I++P R IR++ E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEAITVNAPEKLTNIQVPKRASYIRIIMLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + ERE + +E A+G RM +FR GGV D+P V+ +CD F
Sbjct: 123 ADIGAQTPFFYILREREMIYDLFEAATGMRMMHNFFRIGGVAVDLPYGWVDKCLDFCDYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+++ L+T N IF +R +GT+ E+A WG SG+M+R SG WDLRK YECY
Sbjct: 183 SLKVDEYERLITYNSIFLKRVEGVGTISREEAINWGLSGLMLRASGVQWDLRKVDHYECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
ELD+ + GD RYLVR+ EMRESVKII+Q + + G GP + + +
Sbjct: 243 DELDWQVQSQTEGDSLARYLVRIGEMRESVKIIQQALKVIPG----GPYENLEARRLNQG 298
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ E K + + +P E Y VEAPKGE G+YLI D P+R KIR P
Sbjct: 299 KDSEWNDFE-YQFISKKPSPTFKLPKQEHYIRVEAPKGELGIYLIGDDSVFPWRWKIRPP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
G+ +LQ + L KG +LAD+ ILGS+DI+ GEVD
Sbjct: 358 GFINLQILPQLVKGMKLADIMTILGSIDIIMGEVD 392
>gi|73748694|ref|YP_307933.1| proton-translocating NADH-quinone oxidoreductase, D subunit
[Dehalococcoides sp. CBDB1]
gi|289432720|ref|YP_003462593.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. GT]
gi|123619734|sp|Q3ZXR8|NUOD_DEHSC RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|73660410|emb|CAI83017.1| proton-translocating NADH-quinone oxidoreductase, D subunit
[Dehalococcoides sp. CBDB1]
gi|288946440|gb|ADC74137.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. GT]
Length = 367
Score = 388 bits (998), Expect = e-106, Method: Composition-based stats.
Identities = 165/393 (41%), Positives = 238/393 (60%), Gaps = 30/393 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K+ +F +N GPQHP+ HGV RL + LDGE++ ++P G LHRG EKL E +T+LQ +P+
Sbjct: 4 KTENFILNIGPQHPSTHGVFRLRIVLDGEVITDLEPVFGYLHRGIEKLAEGRTYLQDIPF 63
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDY+ M HAY +AVEKL GI +P R + IRV+ E+ RI SHL + D+G
Sbjct: 64 TDRLDYLGSMTNNHAYVMAVEKLAGITVPERAEYIRVILDELQRIASHLAGLGFFLNDLG 123
Query: 125 AL-TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
AL TP L+ F EREK++ ++ SG R++ Y+R GG QD+P E + + D+ P
Sbjct: 124 ALQTPLLYMFREREKIVELFDMCSGQRLNYNYYRFGGFVQDLPEEFLPALKILLDTLPGF 183
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ L++ N I R +G +K + A +G ++R SG WD+R++ PY Y+
Sbjct: 184 IDEYEQLISTNEIVLIRTKGVGVLKRDLAINSSAAGPVLRASGINWDIRRNDPYSIYNRF 243
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FDIPI K+GD YDRY++R++EMR+SV I+RQ V L G + PK++
Sbjct: 244 EFDIPIAKNGDTYDRYMIRILEMRQSVWILRQAVKDL----PEGEIMGKAPKLL------ 293
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
P GEVY+ +E PKGE G YL+SDG +KPYR ++R P
Sbjct: 294 -------------------KPPAGEVYSRIEGPKGELGFYLVSDGTDKPYRWRVRPPCLL 334
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L A++ + G ++AD+ AI GS+DIV GEVDR
Sbjct: 335 NLSALKDMVVGWKVADLMAIFGSIDIVMGEVDR 367
>gi|163783890|ref|ZP_02178865.1| NADH dehydrogenase I chain D [Hydrogenivirga sp. 128-5-R1-1]
gi|159880834|gb|EDP74363.1| NADH dehydrogenase I chain D [Hydrogenivirga sp. 128-5-R1-1]
Length = 583
Score = 388 bits (998), Expect = e-106, Method: Composition-based stats.
Identities = 166/393 (42%), Positives = 242/393 (61%), Gaps = 1/393 (0%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+K +N+GP HP HG + + +L+GE V+ D +G LHRG EK+ E T+ Q +P
Sbjct: 192 QKKAQIVLNWGPLHPGTHGTIWFLFDLEGEKVKNCDIILGQLHRGVEKIAENITYTQFIP 251
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY++ + AY AVEKLL +E + + IR + E+ RI SHLL + T A+D+
Sbjct: 252 YTDRMDYISAICSNVAYVNAVEKLLNVEPTEKAKWIRTMLCELQRINSHLLWLGTYALDL 311
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALT L+ F EREK+M E +G R++++Y R GGV D+P ++ I + FP+
Sbjct: 312 GALTIFLYTFREREKIMDIIEGIAGIRLNSSYIRIGGVRLDLPEGALDVINHFIKDFPTK 371
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L + +LT NR++ +RNV +G ++ ED + +G +G + R SG A+D+R QP + Y E+
Sbjct: 372 LEEYETILTKNRVWLKRNVGVGIIEEEDVYNYGLTGAVARASGVAYDIRMIQPTDKYDEV 431
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DF+IP+G GD YDRYLVRM EMR+S+ I++QCV +L ++ +P V P +
Sbjct: 432 DFEIPLGTVGDSYDRYLVRMEEMRQSLNIVKQCVEKLEKLKDDKHIATDNP-YVLPTLDE 490
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
S+ES++ F L G P GEVY + E P+GE G Y+IS G +PYR +IR+ +
Sbjct: 491 TFVSIESMVKDFNLRIYGEQAPEGEVYLSGENPRGELGFYIISKGEGRPYRTRIRSGAFY 550
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ L KG +AD +LGSLD V GE DR
Sbjct: 551 NLQIFPELIKGRTIADAVVLLGSLDPVVGETDR 583
>gi|219673998|ref|YP_002456482.1| NADH-plastoquinone oxidoreductase subunit 7 [Trifolium
subterraneum]
gi|229891156|sp|B8R4B1|NDHH_TRISU RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|193788967|gb|ACF20563.1| NADH-plastoquinone oxidoreductase subunit 7 [Trifolium
subterraneum]
Length = 393
Score = 388 bits (997), Expect = e-106, Method: Composition-based stats.
Identities = 164/390 (42%), Positives = 224/390 (57%), Gaps = 5/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +PY
Sbjct: 9 DLMIVNMGPQHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRTIIQYLPYVT 68
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R DY+A M E E+L I++P R IRV+ E+ RI SHLL + D+GA
Sbjct: 69 RWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQ 128
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP + F ERE + +E A+G RM YFR GGV D+P ++ +C+ F + + +
Sbjct: 129 TPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCFDFCNYFLTRVIE 188
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
L+T N IF +R +G V E+ WG SG M+R SG WDLRK YECY E D++
Sbjct: 189 YQKLITRNPIFLERVEGVGVVGREEVLTWGLSGPMLRASGIQWDLRKVDNYECYDEFDWE 248
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ K GD RYLVR+ EM ES+KII+Q + + G GP + + ++
Sbjct: 249 VQWQKEGDSLARYLVRIGEMMESIKIIQQALEGIPG----GPYENLEIRSFDREKEPEWN 304
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
E K + + +P E+Y VEAPKGE G++LI D P+R KIR PG+ +LQ
Sbjct: 305 DFE-YRFIGKKSSPTFELPKQELYVRVEAPKGELGIFLIGDHNGFPWRWKIRPPGFINLQ 363
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 364 ILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|186685062|ref|YP_001868258.1| NAD(P)H-quinone oxidoreductase subunit H [Nostoc punctiforme PCC
73102]
gi|229891145|sp|B2J184|NDHH_NOSP7 RecName: Full=NAD(P)H-quinone oxidoreductase subunit H; AltName:
Full=NAD(P)H dehydrogenase subunit H; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H;
AltName: Full=NDH-1 subunit H; Short=NDH-H
gi|186467514|gb|ACC83315.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Nostoc punctiforme PCC
73102]
Length = 394
Score = 388 bits (997), Expect = e-106, Method: Composition-based stats.
Identities = 171/397 (43%), Positives = 232/397 (58%), Gaps = 10/397 (2%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +N GP HP+ HGVLRLI+ LDGE V +P IG LHRG EK+ E +T + V
Sbjct: 5 ETRTEPMVLNMGPHHPSMHGVLRLIMTLDGEDVVDCEPVIGYLHRGMEKIAENRTNVMYV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R DY A M E A EKL G+ +P R IRV+ E+ RI +HLL D
Sbjct: 65 PYVSRWDYAAGMFNEAVTVNAPEKLAGVAVPKRASYIRVIMLELNRIANHLLWFGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRM-HAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E A+G RM + YFR GGV D+P V+ +CD
Sbjct: 125 VGAQTPFFYQFREREMIYDLWEAATGYRMVNNNYFRVGGVAADLPYGWVDKCLEFCDYLL 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R IGT+ E+A WG SG M+R SG WDLRK YECY
Sbjct: 185 PKVDEYERLVTDNPIFRRRVEGIGTITREEAINWGLSGPMLRASGVQWDLRKVDHYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+D+ GDC+ RY+VRM EMRESVKIIRQ + L G GP + K + +
Sbjct: 245 DFDWDVQWETAGDCFARYVVRMREMRESVKIIRQAIKGLPG----GPYENLEAKRLAAGK 300
Query: 302 ADMKRSMESLIHHF--KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
K ++ + F K + + +P GE+YA VE+ KGE G+YL+ D P R KIRA
Sbjct: 301 ---KSEWDAFDYQFIGKKVSPTFKIPKGEIYARVESGKGELGIYLVGDDNVFPARWKIRA 357
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +LQ + L +G ++AD+ ILGS+D++ G VDR
Sbjct: 358 ADFNNLQIVPHLLRGMKVADIVVILGSVDVIMGSVDR 394
>gi|323702661|ref|ZP_08114322.1| NADH dehydrogenase I, D subunit [Desulfotomaculum nigrificans DSM
574]
gi|323532324|gb|EGB22202.1| NADH dehydrogenase I, D subunit [Desulfotomaculum nigrificans DSM
574]
Length = 366
Score = 388 bits (997), Expect = e-106, Method: Composition-based stats.
Identities = 165/391 (42%), Positives = 233/391 (59%), Gaps = 29/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K+ F +N GPQHP+ HGV R++L LDGE V + P G LHRG EKL E++T+ Q +PY
Sbjct: 4 KTEEFLLNLGPQHPSTHGVFRIVLTLDGETVVKAVPVPGYLHRGIEKLAESRTYTQVIPY 63
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDY+A M Y AVEKL+ IE+P R + IRV+ E+ RI SH++ A D+G
Sbjct: 64 TDRLDYLAGMLMNWGYVHAVEKLMEIEVPERAEFIRVIVGELARIASHMMATGAFAADIG 123
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
LT ++ F +RE ++ +E G+R+ +Y R GGV D+P VE + D P A+
Sbjct: 124 GLTGFIYTFRDREDILDLFEELCGARLTPSYMRIGGVAYDLPDGWVEKCRKFIDYLPKAI 183
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
++ + L+TGN IF+ R N+G + E A SG +RGSG +DLRK++PY Y +
Sbjct: 184 DEYNGLITGNEIFQARTKNVGVLPPEKAIDMSLSGPTLRGSGVNYDLRKARPYSVYDRFE 243
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F++P+G GDC+DRY VR++EM++S IIRQ ++ L GP+ A PKI+
Sbjct: 244 FEVPLGTKGDCFDRYYVRILEMQQSANIIRQALDML----PEGPIRAKVPKII------- 292
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE YA +E+ KG G Y++SDG KPYR R P + +
Sbjct: 293 ------------------KPPAGEAYAEIESSKGIMGTYVVSDGSTKPYRVHFRRPSFVN 334
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
L ++ + +G ++ADV AILGS+DIV GEVD
Sbjct: 335 LSYLDEMLRGWKIADVIAILGSIDIVLGEVD 365
>gi|298566671|gb|ADI86456.1| NADH-plastoquinone oxidoreductase subunit 7 [Merxmuellera
macowanii]
Length = 393
Score = 388 bits (997), Expect = e-106, Method: Composition-based stats.
Identities = 165/393 (41%), Positives = 223/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIITLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPELLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWMDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKIDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRICEMRESIKIIQQAVEKIPG----GPYENLEARRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ G VDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGXVDR 393
>gi|153012165|ref|YP_001381680.1| NADH-plastoquinone oxidoreductase subunit 7 [Medicago truncatula]
Length = 393
Score = 388 bits (997), Expect = e-106, Method: Composition-based stats.
Identities = 163/393 (41%), Positives = 225/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E E+L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +C+ F +
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCFDFCNYFLTR 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G V E+ WG SG M+R SG WDLRK YECY E
Sbjct: 186 VIEYQKLITRNPIFLERVEAVGVVGREEVINWGLSGPMLRASGIQWDLRKVDNYECYEEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+++ K GD RYLVR+ EM ES+KII+Q + + G GP + + ++
Sbjct: 246 DWEVQWQKEGDSLARYLVRIGEMMESIKIIQQALEGIPG----GPYENLEIRSFDREKEP 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + +P E+Y VEAPKGE G++L+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFIGKKSSPTFELPKQELYVRVEAPKGELGIFLLGDQNGFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|290489820|gb|ADD31317.1| NADH-plastoquinone oxidoreductase subunit 7 protein [Cornus
florida]
Length = 393
Score = 388 bits (997), Expect = e-106, Method: Composition-based stats.
Identities = 166/393 (42%), Positives = 227/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E+L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F +
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPHGWIDKCLDFCDYFLTG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY E
Sbjct: 186 VAEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYECYDEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+++ K GD RYLVR+ EM+ES+KII+Q + + G K+ P+ D
Sbjct: 246 DWEVQWQKEGDSLARYLVRIGEMKESIKIIQQALEGIPGGPYENLEIRRFDKVRNPEWND 305
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ S K + + + E+Y VEAPKGE G++LI D P+R KIR PG+
Sbjct: 306 FEYRFIS-----KKPSPTFELSNQELYVRVEAPKGELGIFLIGDQSVFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|290489798|gb|ADD31306.1| NADH-plastoquinone oxidoreductase subunit 7 protein [Aucuba
japonica]
Length = 393
Score = 388 bits (996), Expect = e-106, Method: Composition-based stats.
Identities = 166/393 (42%), Positives = 225/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E+L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F +
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPHGWIDKCLDFCDYFLTR 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY E
Sbjct: 186 IAEYQKLITRNPIFLERVEGVGFISGEEAINWGLSGPMLRASGIQWDLRKVDHYECYDEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+++ K GD RYLVR+ EM ES+KII+Q + + G GP + + R
Sbjct: 246 DWEVQWQKEGDSLARYLVRIGEMTESIKIIQQALEGIPG----GPYENLEIRRFDKVRDA 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G++LI D P+R KIR PG+
Sbjct: 302 DWNDFE-YRFISKKPSPTFELSKQELYVRVEAPKGELGIFLIGDQSVFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|63100877|gb|AAH95651.1| Zgc:112036 [Danio rerio]
gi|182890580|gb|AAI64772.1| Zgc:112036 protein [Danio rerio]
Length = 370
Score = 388 bits (996), Expect = e-105, Method: Composition-based stats.
Identities = 219/355 (61%), Positives = 279/355 (78%), Gaps = 4/355 (1%)
Query: 42 IGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRV 101
+ LHRGTEKLIE KT+LQA+PYFDRLDYV+ M E AY+LAVEKLL I+ P R Q IRV
Sbjct: 20 LSTLHRGTEKLIEYKTYLQALPYFDRLDYVSTMCNEQAYSLAVEKLLNIQAPPRAQWIRV 79
Query: 102 LYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGV 161
L+ E+ RI++H++ +TT A+D+GA+TP W FEEREKL FYER SG+RMHAAY RPGGV
Sbjct: 80 LFGEMTRIMNHIMGITTHALDIGAMTPFFWMFEEREKLFEFYERVSGARMHAAYVRPGGV 139
Query: 162 HQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVM 221
HQD+P L++DI WC +F ++++ ++LT NRI+K R V IG + E+A +GFSGVM
Sbjct: 140 HQDMPLGLMDDIYEWCKNFSIRIDEVEEMLTNNRIWKNRTVGIGVIGAEEALNYGFSGVM 199
Query: 222 IRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL 281
+RGSG WDLRKSQPY+ Y E++FD+ IG +GDCYDRYL R+ EMR+S++I+ QC+N++
Sbjct: 200 LRGSGIKWDLRKSQPYDKYDEVEFDMAIGTNGDCYDRYLCRVEEMRQSLRIMHQCLNKM- 258
Query: 282 GKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFG 341
G + D KI PPKR++MK SMESLIHHFKLYTEGY VP G Y A+EAPKGEFG
Sbjct: 259 ---PPGEIKVDDAKIAPPKRSEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFG 315
Query: 342 VYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
VYL+SDG ++PYRCKI+APG+AHL ++ + +GH LADV AI+G+ DIVFGEVDR
Sbjct: 316 VYLVSDGSSRPYRCKIKAPGFAHLAGLDRMSQGHMLADVVAIIGTQDIVFGEVDR 370
>gi|298566675|gb|ADI86458.1| NADH-plastoquinone oxidoreductase subunit 7 [Eriachne mucronata]
Length = 395
Score = 388 bits (996), Expect = e-105, Method: Composition-based stats.
Identities = 163/396 (41%), Positives = 223/396 (56%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + + +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 5 LTRTRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ 64
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E A E L I+IP R IRV+ E+ RI SHLL +
Sbjct: 65 YLPYVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFM 124
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 125 ADLGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWMDKCLDFCDYF 184
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YE Y
Sbjct: 185 LRGVVEYQQLITRNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKIDIYESY 244
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
++ + + K GD RYLVR+ EM ESVKII+Q + ++ G GP + +
Sbjct: 245 NQFAWKVQWQKEGDSLARYLVRIGEMGESVKIIQQAIRKIPG----GPYENLEARRFKKA 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ E K + + + E+Y VEAPKGE G+YL+ D P+R KIR P
Sbjct: 301 KNSEWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPP 359
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 360 GFINLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 395
>gi|290489810|gb|ADD31312.1| NADH-plastoquinone oxidoreductase subunit 7 protein [Nelumbo
nucifera]
Length = 393
Score = 388 bits (996), Expect = e-105, Method: Composition-based stats.
Identities = 166/393 (42%), Positives = 225/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E+L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F +
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLTG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY E
Sbjct: 186 VAEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYECYDEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+++ K GD RYLVR+ EM ES+KII+Q + + G GP + + +
Sbjct: 246 DWEVQWQKEGDSLARYLVRIGEMTESIKIIQQALEGIPG----GPYENLEVRRFARAKDS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+YA VEAPKGE G+YLI D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFISKKPSPTFELSKQELYARVEAPKGELGIYLIGDQSVFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|237752489|ref|ZP_04582969.1| NADH-quinone oxidoreductase [Helicobacter winghamensis ATCC
BAA-430]
gi|229375978|gb|EEO26069.1| NADH-quinone oxidoreductase [Helicobacter winghamensis ATCC
BAA-430]
Length = 409
Score = 387 bits (995), Expect = e-105, Method: Composition-based stats.
Identities = 163/396 (41%), Positives = 247/396 (62%), Gaps = 2/396 (0%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
D+ + +NFGPQHP+AHG LRLILEL+GE V + P +G LHRG EK+ E + +
Sbjct: 16 FDRISNNVMVVNFGPQHPSAHGQLRLILELEGEKVIKATPDVGYLHRGMEKMAENMIYNE 75
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+P DR+DY+A + + +ALAVE+LLG+++P R ++IR + E+ RI+SHL + T A
Sbjct: 76 FLPTTDRMDYIAASSNNYGFALAVERLLGVDVPRRAKVIRTMLLELNRIISHLFWLATHA 135
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+DVGA++ L+ F ERE + E G+R+ + R GGV D+P + + + + ++
Sbjct: 136 LDVGAMSIFLYCFREREFAIDLIEDYCGARLTHSSVRIGGVPLDLPKDWIAKLKVFLEAL 195
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
PS + +L+ NRI++ R N+G V + A WG SGVM+RGSG AWD+RK +PYE Y
Sbjct: 196 PSQIELYEGILSENRIWRMRLENVGVVSAQMAKSWGLSGVMLRGSGIAWDIRKEEPYELY 255
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
EL+FD+P+ + D Y RYL+ M EMR+S++I+ Q +++ + + + + +
Sbjct: 256 DELEFDVPVSESCDSYGRYLLYMEEMRQSIRILHQLIDKYKDTDTL--LMCENTRYFSAP 313
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ + SL+ HF L +G PVGE+Y E+PKGE G ++ S G PYR K+R P
Sbjct: 314 KEQIMTQNYSLMQHFVLVAQGMRPPVGEIYVPTESPKGELGFFICSRGEPYPYRVKMRTP 373
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ H ++ L GH LADV I+G+ +IVFGE+DR
Sbjct: 374 SFFHTGVLQDLLPGHYLADVVTIIGNTNIVFGEIDR 409
>gi|114330026|ref|YP_740707.1| NADH-plastoquinone oxidoreductase subunit 7 [Nandina domestica]
gi|122165911|sp|Q09FQ4|NDHH_NANDO RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|114054528|gb|ABI49921.1| NADH-plastoquinone oxidoreductase subunit 7 [Nandina domestica]
Length = 393
Score = 387 bits (995), Expect = e-105, Method: Composition-based stats.
Identities = 166/396 (41%), Positives = 227/396 (57%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 VPTTRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E A E+L I++P R IRV+ E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEAITVNAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 123 ADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPHGWIDKCLDFCDYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ + + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY
Sbjct: 183 VTGVTEYQKLITRNPIFLERVEGVGFISGEEAINWGLSGPMLRASGIQWDLRKVDHYECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E D+++ K GD RYLVR+ EM ES+KII+Q + R+ G GP + +
Sbjct: 243 DEFDWEVQWQKEGDSLARYLVRINEMTESIKIIQQALERIPG----GPYENLEVRRFDRT 298
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R + K + + + E+Y VEAPKGE G++LI D P+R KIR P
Sbjct: 299 RDSEWNDFD-YRFISKKPSPTFELSKQELYVRVEAPKGELGIFLIGDQSVFPWRWKIRPP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 358 GFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|303248401|ref|ZP_07334661.1| NADH dehydrogenase I, D subunit [Desulfovibrio fructosovorans JJ]
gi|302490199|gb|EFL50117.1| NADH dehydrogenase I, D subunit [Desulfovibrio fructosovorans JJ]
Length = 790
Score = 387 bits (995), Expect = e-105, Method: Composition-based stats.
Identities = 155/394 (39%), Positives = 234/394 (59%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ + + +NFGP H A HG+ R +L + GE ++ + IG HRG EK+ E +T+ Q +
Sbjct: 401 RADAGDYLLNFGPHHYATHGIFRYVLAMRGERIKALGMDIGYHHRGVEKIGERQTWHQFI 460
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR+DY++ + +Y AVE L GIE+P R RV+ SE+ RI +HL+ T D
Sbjct: 461 PYTDRVDYLSGVANNLSYVTAVETLTGIEVPPRAAYARVMLSELFRISNHLMYFGTFLQD 520
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+G ++P + ERE ++ E +G R+H ++ R GG+ D+P E + + FP
Sbjct: 521 LGMMSPIFYALRERELVLDIIETITGGRLHPSWLRIGGMAADLPEGWKEQVDAFIKIFPG 580
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ + +T N I K R +GT+ +A WG +G +R +G AWD RK PY Y++
Sbjct: 581 RVKEYHAGVTKNPIVKARCRGVGTISAAEAIDWGVTGPNLRATGVAWDRRKKMPYGAYAD 640
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DFD+P GDC+ RYLVRM EM ES++II+Q + + G G A+D + P++
Sbjct: 641 FDFDVPTRDAGDCFSRYLVRMDEMLESLRIIKQAADNMPG----GRWLAADARYSLPQKR 696
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ +ESLIHHF T G +PVG+ YAA EAP+GE G Y++SDG YR ++R PG+
Sbjct: 697 EALTDIESLIHHFVNVTRGPRLPVGQAYAATEAPRGEQGYYVVSDGDCHAYRMRVRTPGF 756
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A++QAM L +G ++AD A+L S D + ++DR
Sbjct: 757 ANIQAMPLLAEGLRVADFVAVLASYDYILPDIDR 790
>gi|296936727|gb|ADH94399.1| NADH-plastoquinone oxidoreductase subunit 7 [Syzygium cumini]
Length = 393
Score = 387 bits (995), Expect = e-105, Method: Composition-based stats.
Identities = 168/396 (42%), Positives = 229/396 (57%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + +N GP HP+ HGVLRLIL LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 VTTTRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTVIQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E E+L I++P R IRV+ E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 123 ADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+A+++ L+ N IF +R +G + E+A WG SG M+R SG WDLRK YECY
Sbjct: 183 LTAVSEYQKLIMRNPIFLERVEGVGIIGPEEAINWGLSGPMLRASGIQWDLRKVDHYECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
ELD++I K GD RYLVR+ EMRES+KII+Q + + G + + P+
Sbjct: 243 DELDWEIHWQKEGDSLARYLVRIAEMRESIKIIQQALEGIPGGPYENLETRFFARERDPE 302
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
D + S K + + +P E+Y VEAPKGE G++LI D P+R KIR P
Sbjct: 303 WNDFEYRFIS-----KKPSPTFELPKQELYVRVEAPKGELGIFLIGDQSGFPWRWKIRPP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 358 GFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|194132140|gb|ACF33394.1| NADH-plastoquinone oxidoreductase subunit 7 [Gonystylus bancanus]
Length = 393
Score = 387 bits (995), Expect = e-105, Method: Composition-based stats.
Identities = 165/394 (41%), Positives = 225/394 (57%), Gaps = 5/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +
Sbjct: 5 TTEKDLMIVNMGPHHPSMHGVLRLIVTLDGENVVDCEPILGYLHRGMEKIAENRTIIQYL 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R DY+A M E E+L I++P R IRV+ E+ R+ SHLL + D
Sbjct: 65 PYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRLASHLLWLGPFMAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA TP + F ERE + +E A+G RM YFR GG+ D+P ++ +CD F +
Sbjct: 125 IGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGIAADLPYGWIDKCLDFCDYFLT 184
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY E
Sbjct: 185 GVVEYQKLITRNPIFLERVEGVGIISGEEAINWGLSGPMLRASGIQWDLRKVDHYECYDE 244
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
D++I K GD RYLVR+ EM ES+KII+Q + L G + P+
Sbjct: 245 FDWEIQWQKEGDSLARYLVRISEMTESIKIIQQALEFLPGGPYENLEIRCFDRERDPEWN 304
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
D + S K + + +P E+Y VEAPKGE G++LI D P+R KIR PG+
Sbjct: 305 DFEYRFIS-----KKPSPTFELPKQELYVRVEAPKGELGIFLIGDKSCFPWRWKIRPPGF 359
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L KG +LAD+ ILGS+DI+ GEVDR
Sbjct: 360 INLQILPQLVKGMKLADIMTILGSIDIIMGEVDR 393
>gi|84494927|ref|ZP_00994046.1| NADH dehydrogenase delta subunit [Janibacter sp. HTCC2649]
gi|84384420|gb|EAQ00300.1| NADH dehydrogenase delta subunit [Janibacter sp. HTCC2649]
Length = 465
Score = 387 bits (995), Expect = e-105, Method: Composition-based stats.
Identities = 183/410 (44%), Positives = 239/410 (58%), Gaps = 20/410 (4%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+N GPQHP+ HGVLRLILELDGE V IG LH G EK +E + ++Q V +
Sbjct: 58 HEERIVVNMGPQHPSTHGVLRLILELDGETVTEARAGIGYLHTGIEKNMEYRNWVQGVTF 117
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
R+DY+ PM QE Y L +E+LLGIE IP R +IRVL E+ RI SHL+ + T M+
Sbjct: 118 CTRMDYLTPMFQETTYCLGIERLLGIEDQIPERASIIRVLMMELTRINSHLVCLGTGGME 177
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA T GF ERE+++ +E +G RM+ AY RPGGV QD+P ++ I
Sbjct: 178 LGATTVMTVGFRERERILRIFEAVTGLRMNNAYIRPGGVAQDLPHGCLDQINGTVGELRQ 237
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+++ LL N I K R N+G + L G +G ++R +G DLRKSQPY Y
Sbjct: 238 GLHELELLLNENPILKGRTKNVGYLDLAGCMALGITGPILRSTGLPHDLRKSQPYCGYET 297
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK-- 300
DF++ D YDR +R+ EM ES+KI+ QCV RL K GPV D KI P
Sbjct: 298 YDFEVITRTGADAYDRIRIRLDEMYESLKIVEQCVERL--KKVTGPVMVEDKKIAWPAQL 355
Query: 301 --------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLIS 346
R M SMESLIHHFKL TEG+ VP G+ Y +E+PKGE G +++S
Sbjct: 356 SVGSDGQGNSLDHIREIMGTSMESLIHHFKLVTEGFRVPAGQAYVPIESPKGELGCHIVS 415
Query: 347 DGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
DGG +PYR R P + +LQA+ L +G Q+ADV + S+D V G VDR
Sbjct: 416 DGGTRPYRAHFRDPSFNNLQAVAALSEGGQVADVIVAVASIDPVMGGVDR 465
>gi|283850904|ref|ZP_06368190.1| NADH dehydrogenase I, D subunit [Desulfovibrio sp. FW1012B]
gi|283573827|gb|EFC21801.1| NADH dehydrogenase I, D subunit [Desulfovibrio sp. FW1012B]
Length = 790
Score = 387 bits (994), Expect = e-105, Method: Composition-based stats.
Identities = 151/394 (38%), Positives = 231/394 (58%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ + + +NFGP H A HG+ R +L + GE ++ + IG HRG EK+ E +T+ Q +
Sbjct: 401 RADAGDYLLNFGPHHYATHGIFRYVLAMRGERIKALGMDIGYHHRGVEKIGERQTWHQFI 460
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR+DY++ + +Y AVE L GI +P R RV+ SE+ RI +HL+ T D
Sbjct: 461 PYTDRVDYLSGVANNLSYVTAVETLAGITVPPRAAYARVMLSELFRISNHLMYFGTFLQD 520
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+G ++P + ERE ++ E +G R+H A+ R GG+ D+P + + + FP
Sbjct: 521 LGMMSPIFYALREREMVLDIIETITGGRLHPAWLRIGGMAADLPEGWKDMVDAFVRIFPG 580
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L + +T N I K R +G + DA WG +G +R +G ++D RK+ PY Y++
Sbjct: 581 RLKEYHAGVTKNPILKARCQGVGCIAAADAVDWGMTGPNLRATGVSFDRRKTMPYGAYAD 640
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DFD+P GDCY RYLVRM EMRES++I+ Q R+ G + D + P+++
Sbjct: 641 FDFDVPTRDAGDCYARYLVRMDEMRESLRIVEQAAARM----PSGRWLSEDVRYSLPQKS 696
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ +ESLIHHF T G +P G+ YAA EAP+GE G Y++SDGG YR +IR PG+
Sbjct: 697 EALNDIESLIHHFVNVTRGPRLPAGQAYAATEAPRGEQGYYVVSDGGCHAYRMRIRTPGF 756
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A++Q + + +G ++AD A+L S D + ++DR
Sbjct: 757 ANIQTLPLIAEGLRIADFVAVLASFDYILPDIDR 790
>gi|298566645|gb|ADI86443.1| NADH-plastoquinone oxidoreductase subunit 7 [Thysanolaena
latifolia]
Length = 393
Score = 387 bits (994), Expect = e-105, Method: Composition-based stats.
Identities = 163/393 (41%), Positives = 222/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IR++ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRIIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWMDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKIDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRIGEMRESIKIIQQAVEKIPG----GPYENLEARRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ VDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMXXVDR 393
>gi|91214189|ref|YP_538812.1| NADH dehydrogenase subunit 7 [Glycine max]
gi|122202479|sp|Q2PMN8|NDHH_SOYBN RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|83595790|gb|ABC25171.1| NADH-plastoquinone oxidoreductase subunit 7 [Glycine max]
Length = 393
Score = 387 bits (994), Expect = e-105, Method: Composition-based stats.
Identities = 161/396 (40%), Positives = 225/396 (56%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 ISTTRKDFMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E E+L I++P R IRV+ E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE + +E A+G RM +FR GGV D+P V+ +CD F
Sbjct: 123 ADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNFFRIGGVATDLPYGWVDKCYDFCDYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ + + L+T N IF +R +G V +++ WG SG M+R SG WDLRK YECY
Sbjct: 183 LTRIVEYQKLITRNPIFLERVEGVGVVDIKEVINWGLSGPMLRASGIQWDLRKVDNYECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E D+++ K GD RYLVR+ EM ES+KII+Q + + G + P+
Sbjct: 243 EEFDWEVQWQKEGDSLARYLVRIGEMMESIKIIQQALEGIPGGPYENLEIRCFDREKEPE 302
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ + S K + + +P E+Y +EAPKGE G++LI D P+R KIR P
Sbjct: 303 WNEFEYRFIS-----KKPSPTFELPKQELYVRIEAPKGELGIFLIGDQNGFPWRWKIRPP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 358 GFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|330850681|ref|YP_004376562.1| NADH-plastoquinone oxidoreductase subunit 7 [Ptilidium
pulcherrimum]
gi|302024810|gb|ADK89656.1| NADH-plastoquinone oxidoreductase subunit 7 [Ptilidium
pulcherrimum]
Length = 393
Score = 387 bits (994), Expect = e-105, Method: Composition-based stats.
Identities = 167/390 (42%), Positives = 227/390 (58%), Gaps = 5/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+ I+ GP HP+ HGVLRLI+ L+GE V +P +G LHRG EK+ E +T +Q +PY
Sbjct: 9 KPMIISMGPHHPSMHGVLRLIISLEGENVSDCEPILGYLHRGMEKIAENRTIIQYLPYVT 68
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R DY+A M E EKL I++P R IRV+ E+ RI SHLL + D+GA
Sbjct: 69 RWDYLATMFTEAITVNGPEKLTNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQ 128
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F +++
Sbjct: 129 TPFFYIFREREMIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLPKVSE 188
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
L+T N IF +R IG + ++A WG SG M+R SG WDLRK YECY ELD+
Sbjct: 189 YEKLITNNPIFLERVEGIGIIDRDEAINWGLSGPMLRASGIQWDLRKVDHYECYDELDWQ 248
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
I K GD RYLVR+ EM+ES KII+Q + + G GP + + + ++
Sbjct: 249 IQWQKEGDSLARYLVRIGEMKESAKIIQQALKSIPG----GPYENLEARRLNKQKNSEWN 304
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
S E K + + +P E Y VEAPKGE G+++I D P+R KIR PG+ +LQ
Sbjct: 305 SFE-YQFIGKKPSPTFKLPKQEHYVRVEAPKGELGIFVIGDNSVFPWRFKIRPPGFINLQ 363
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ L KG +LAD+ ILGS+DI+ GEVDR
Sbjct: 364 ILSQLVKGMKLADIMTILGSIDIIMGEVDR 393
>gi|159161217|ref|YP_001542503.1| NADH-plastoquinone oxidoreductase subunit 7 [Ceratophyllum
demersum]
gi|218527821|sp|A8SEG2|NDHH_CERDE RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|148508500|gb|ABQ81507.1| NADH-plastoquinone oxidoreductase subunit 7 [Ceratophyllum
demersum]
Length = 393
Score = 387 bits (994), Expect = e-105, Method: Composition-based stats.
Identities = 166/396 (41%), Positives = 226/396 (57%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ K+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 VPDKRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPVLGYLHRGMEKIAENRTIIQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E A E+L I++P R IRV+ E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEAITVNAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE + +E A+G RM +FR GGV D+P ++ +CD F
Sbjct: 123 ADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNFFRIGGVAADLPHGWIDKCLDFCDYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ + + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YE Y
Sbjct: 183 LTGVVEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIPWDLRKVDHYESY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E D++I K GD RYLVR+ EM ES+KII+Q + + G GP + +
Sbjct: 243 DEFDWEIQWQKEGDSLARYLVRINEMIESIKIIQQVLEGIPG----GPYENLEVRRFARP 298
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ E K + + + E+Y VEAPKGE GV+LI D P+R KIR P
Sbjct: 299 KDSEWNDFE-YRFISKKPSPSFELSKQELYVRVEAPKGELGVFLIGDNSVFPWRWKIRPP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 358 GFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|169794128|ref|YP_001718492.1| NADH dehydrogenase subunit 7 [Manihot esculenta]
gi|218527781|sp|B1NWK5|NDHH_MANES RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|157695940|gb|ABV66209.1| NADH-plastoquinone oxidoreductase subunit 7 [Manihot esculenta]
Length = 393
Score = 386 bits (993), Expect = e-105, Method: Composition-based stats.
Identities = 166/393 (42%), Positives = 224/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E E L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNGPELLGNIQVPKRAGYIRVIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM +FR GGV D+P ++ +CD F +
Sbjct: 126 GAQTPFFYIFRERELVYDLFEAATGMRMMHNFFRIGGVASDLPHGWIDKCLDFCDYFLTG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G V E+A WG SG M+R SG WDLRK YECY E
Sbjct: 186 VTEYQKLITRNPIFLERVEGVGIVGTEEAINWGLSGPMLRASGVQWDLRKVDHYECYDEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D++I K GD RYLVR+ EM ES+KII+Q + + G GP + + +R
Sbjct: 246 DWEIQWQKEGDSLARYLVRIGEMLESIKIIQQALEGIPG----GPYENLETRRFDRERDS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + +P E+Y VEAPKGE G++LI D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFISKKTSPTFELPKQELYVRVEAPKGELGIFLIGDQSGFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPELVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|289065145|ref|YP_003434031.1| NADH-plastoquinone oxidoreductase subunit 7 [Typha latifolia]
gi|281371828|gb|ADA63755.1| NADH-plastoquinone oxidoreductase subunit 7 [Typha latifolia]
Length = 393
Score = 386 bits (993), Expect = e-105, Method: Composition-based stats.
Identities = 165/393 (41%), Positives = 227/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E+L +++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEQLENVQVPQRASYIRVIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE L +E A+G RM YFR GGV D+P ++ +CD +
Sbjct: 126 GAQTPFFYIFRERELLYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYSLTG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY+E
Sbjct: 186 VDEYQKLITRNPIFLERVEGVGIIGGEEAVNWGLSGPMLRASGIPWDLRKIDFYECYNEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++++ K GD RYLVR+ EMRES+KII+Q + + G GP + + +
Sbjct: 246 NWEVQWQKEGDSLARYLVRIGEMRESIKIIQQALEGIPG----GPYENLEVRRFDRAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YLI D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFISKKPSPNFELSKQELYVRVEAPKGELGIYLIGDNSVFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|126659420|ref|ZP_01730554.1| NADH dehydrogenase delta subunit [Cyanothece sp. CCY0110]
gi|126619256|gb|EAZ89991.1| NADH dehydrogenase delta subunit [Cyanothece sp. CCY0110]
Length = 394
Score = 386 bits (993), Expect = e-105, Method: Composition-based stats.
Identities = 168/395 (42%), Positives = 234/395 (59%), Gaps = 6/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +N GP HP+ HGVLRLI+ LDGE V +P IG LHRG EK+ E +T + V
Sbjct: 5 ETRTEPMVLNMGPHHPSMHGVLRLIVTLDGEDVVDCEPVIGYLHRGMEKIAENRTNIMYV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R DY A M E A E+L IE+P R Q IRV+ E+ RI +HLL + D
Sbjct: 65 PYVSRWDYAAGMFNEAITVNAPEQLADIEVPKRAQYIRVIMLELNRIANHLLWLGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSR-MHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E ASG R ++ YFR GGV D+P ++ +CD+F
Sbjct: 125 VGAQTPFFYIFREREMIYDLWEAASGMRLINNNYFRVGGVAVDLPYGWIDKCEDFCDAFD 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R +GT+ E+A WG SG M+RGSG WDLRK YECY
Sbjct: 185 PKVDEYEKLITNNPIFRRRVEGVGTITREEAINWGLSGPMLRGSGVKWDLRKVDHYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+++ GDC+ RYLVR+ EMRESVKIIRQ + + G GP + K + +
Sbjct: 245 DFDWEVQWETAGDCFARYLVRIREMRESVKIIRQALKGIPG----GPFENLEAKRMMEGK 300
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
E + K + +P GE Y +E+ KGE G++++ + P+R KIRAP
Sbjct: 301 KSEWNDFE-YQYIAKKVAPTFKIPEGEHYVRMESGKGELGIFIVGNNDVFPWRWKIRAPD 359
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +LQ + L KG ++AD+ AILGS+DI+ G VDR
Sbjct: 360 FNNLQILPHLLKGVKVADIMAILGSIDIIMGSVDR 394
>gi|258514493|ref|YP_003190715.1| NADH dehydrogenase subunit D [Desulfotomaculum acetoxidans DSM 771]
gi|257778198|gb|ACV62092.1| NADH dehydrogenase I, D subunit [Desulfotomaculum acetoxidans DSM
771]
Length = 367
Score = 386 bits (993), Expect = e-105, Method: Composition-based stats.
Identities = 163/391 (41%), Positives = 239/391 (61%), Gaps = 27/391 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K+++F++NFGPQHPA HGV +++L LDGE + + +P G LHRG EKL E +T+ Q +PY
Sbjct: 3 KTQTFSLNFGPQHPATHGVFQILLTLDGETIVKAEPICGYLHRGIEKLAEARTYTQVIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDY+A M Y AVEKL IE+P R + +RV+ E+ R+ SH+L A+D+G
Sbjct: 63 TDRLDYLAAMLMNMGYVQAVEKLAQIEVPERAEYLRVITGELSRLTSHVLTTGVYALDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
+T F EREK+M E SGSRM +Y R GGV D P ++ + + D P +
Sbjct: 123 GITGFFLCFREREKMMDLLEEISGSRMTVSYMRIGGVADDAPEGWLDKVDKFMDEMPGYI 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
++ L+TGN IF+ R ++G + E A + SG ++R +G +DLRK+ PY Y D
Sbjct: 183 DEYDALITGNEIFQARTKHVGVLTQEQAISYSLSGPVLRSTGVNYDLRKAHPYSIYDRFD 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F++P+G+ GDC+DRY R++EMR+S++II+Q + ++ K GP+ A PK+
Sbjct: 243 FEVPLGERGDCFDRYRCRVLEMRQSLRIIKQAIEQI--KEIDGPIMAKVPKM-------- 292
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
+ P GEVY +E+ KG G ++SDG NKPYR +R P + +
Sbjct: 293 -----------------FKPPKGEVYHEIESSKGILGYSVVSDGSNKPYRVHVRRPSFIN 335
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
L ++ +C+G ++ADV AILGS+DIV GEVD
Sbjct: 336 LGYIDEMCRGWKVADVVAILGSIDIVLGEVD 366
>gi|172039630|ref|YP_001806131.1| NAD(P)H-quinone oxidoreductase subunit H [Cyanothece sp. ATCC
51142]
gi|171701084|gb|ACB54065.1| NADH dehydrogenase subunit 7 [Cyanothece sp. ATCC 51142]
Length = 394
Score = 386 bits (993), Expect = e-105, Method: Composition-based stats.
Identities = 167/395 (42%), Positives = 234/395 (59%), Gaps = 6/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +N GP HP+ HGVLRLI+ LDGE V +P IG LHRG EK+ E +T + V
Sbjct: 5 ETRTEPMVLNMGPHHPSMHGVLRLIVTLDGEDVVDCEPVIGYLHRGMEKIAENRTNIMYV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R DY A M E A E+L IE+P R Q IRV+ E+ RI +HLL + D
Sbjct: 65 PYVSRWDYAAGMFNEAITVNAPEQLADIEVPKRAQYIRVIMLELNRIANHLLWLGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSR-MHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E ASG R ++ YFR GGV D+P ++ +CD+F
Sbjct: 125 VGAQTPFFYIFREREMIYDLWEAASGMRLINNNYFRVGGVAVDLPYGWIDKCEDFCDAFD 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R +GT+ ++A WG SG M+RGSG WDLRK YECY
Sbjct: 185 PKVDEYEKLITNNPIFRRRVEGVGTITRDEAINWGLSGPMLRGSGVQWDLRKVDHYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+++ GDC+ RYLVR+ EMRESVKIIRQ + + G GP + K + +
Sbjct: 245 DFDWEVQWETAGDCFARYLVRIREMRESVKIIRQALKGIPG----GPYENLEAKRMMEGK 300
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
E + K + +P GE Y +E+ KGE G++++ + P+R KIRAP
Sbjct: 301 KSEWNDFE-YQYIAKKVAPTFKIPEGEHYVRMESGKGELGIFIVGNNDVFPWRWKIRAPD 359
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +LQ + L KG ++AD+ AILGS+DI+ G VDR
Sbjct: 360 FNNLQILPHLLKGVKVADIMAILGSIDIIMGSVDR 394
>gi|295136965|ref|YP_003587799.1| NADH dehydrogenase subunit 7 [Lathyrus sativus]
gi|293338687|gb|ADE43659.1| NADH dehydrogenase subunit 7 [Lathyrus sativus]
Length = 393
Score = 386 bits (992), Expect = e-105, Method: Composition-based stats.
Identities = 162/393 (41%), Positives = 226/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E E+L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM +FR GGV D+P ++ +C+ F +
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNFFRIGGVAADLPYGWIDKCLDFCNYFLTR 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G V E+ WG SG M+R SG WDLR+ YECY EL
Sbjct: 186 VIEYQKLITRNPIFLERVEGVGVVGREEVINWGLSGPMLRASGIQWDLREVDNYECYEEL 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+++ K GD RYLVR+ EM ES+KII+Q + + G GP + + ++
Sbjct: 246 DWEVQWQKEGDSLARYLVRIGEMVESIKIIQQALEGIPG----GPYENFEIRCFDREKEP 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + +P E+Y +EAPKGE G++LI D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFIGKKPSPTFELPKQELYVRIEAPKGELGIFLIGDQNGFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|156598331|gb|ABU85426.1| NADH-plastoquinone oxidoreductase subunit 7 [Musa acuminata]
Length = 393
Score = 386 bits (992), Expect = e-105, Method: Composition-based stats.
Identities = 166/393 (42%), Positives = 226/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TKKDFMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E+L +++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEQLENVQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F +
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLTG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY+E
Sbjct: 186 IVEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGTQWDLRKIDNYECYNEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+++ K GD RYLVR+ EMRES+KII+Q + + G GP + + +
Sbjct: 246 DWEVQWQKEGDSLARYLVRIGEMRESIKIIQQALEGIPG----GPYENLEVRRFDRAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YLI D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFISKKPSPNFELSKQELYVRVEAPKGELGIYLIGDNSVFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|122894037|ref|YP_001004233.1| NADH-plastoquinone oxidoreductase subunit 7 [Ranunculus macranthus]
gi|218527791|sp|A1XGT5|NDHH_RANMC RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|85540851|gb|ABC70803.1| NADH-plastoquinone oxidoreductase subunit 7 [Ranunculus macranthus]
Length = 393
Score = 386 bits (992), Expect = e-105, Method: Composition-based stats.
Identities = 160/396 (40%), Positives = 225/396 (56%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + +N GPQHP+ HGVLRL++ LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 VPTTRKDLMIVNMGPQHPSMHGVLRLVVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E E+L I++P R IRV+ E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 123 ADIGAQTPFFYIFRERELIYDLFESATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ + + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY
Sbjct: 183 LTGVTEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E D+++ K GD RYLVR+ EM ES+KI++Q + + G GP + +
Sbjct: 243 DEFDWEVQWQKEGDSLARYLVRISEMTESIKILQQALEGIPG----GPYENLEVRRFDRA 298
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ + K + + + E+Y VEAPKGE G++L+ D P+R KIR P
Sbjct: 299 KDSEWNDFD-YRFISKKPSPTFELSKQELYVRVEAPKGELGIFLVGDKSVFPWRWKIRPP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 358 GFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|218437359|ref|YP_002375688.1| NAD(P)H-quinone oxidoreductase subunit H [Cyanothece sp. PCC 7424]
gi|218170087|gb|ACK68820.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 7424]
Length = 394
Score = 386 bits (992), Expect = e-105, Method: Composition-based stats.
Identities = 167/395 (42%), Positives = 230/395 (58%), Gaps = 6/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +N GP HP+ HGVLRLI+ LDGE V +P IG LHRG EK+ E +T + V
Sbjct: 5 ETRTEPMVLNMGPHHPSMHGVLRLIVTLDGEDVVDCEPVIGYLHRGMEKIAENRTNIMYV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R DY M E A EKL IE+P R Q IRV+ E+ RI +HLL + D
Sbjct: 65 PYVSRWDYAEGMFNEAITVNAPEKLADIEVPKRAQYIRVIMLELNRIANHLLWLGPFMAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRM-HAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E ASG RM + YFR GGV D+P V+ +CD F
Sbjct: 125 VGAQTPFFYIFREREMIYDLWEAASGYRMVNNNYFRIGGVAVDLPYGWVDKCYDFCDYFD 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R +GT+ ++A WG SG M+R SG WDLRK YECY
Sbjct: 185 PKVDEYEKLITDNPIFRRRVEGVGTITRQEAINWGLSGPMLRASGVKWDLRKVDHYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+++ GDC+ RYLVR+ EMRESVKI+RQ + L G GP + K + +
Sbjct: 245 DFDWEVHWETAGDCFARYLVRIREMRESVKILRQALKGLPG----GPYENLEAKRLAEGK 300
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
E + K + +P GE Y +E+ KGE G++++ + P+R KIRA
Sbjct: 301 KSQWNDFE-YQYIAKKVAPTFKIPAGEHYVRLESGKGELGIFIVGNDDVFPWRWKIRAAD 359
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +LQ + L KG ++AD+ AILGS+DI+ G VDR
Sbjct: 360 FNNLQILPHLLKGVKVADIMAILGSIDIIMGSVDR 394
>gi|326909446|ref|YP_004327717.1| NADH dehydrogenase subunit 7 [Hevea brasiliensis]
gi|308523560|gb|ADO33610.1| NADH dehydrogenase subunit 7 [Hevea brasiliensis]
Length = 393
Score = 386 bits (992), Expect = e-105, Method: Composition-based stats.
Identities = 165/393 (41%), Positives = 224/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E E L I++P R IR++ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNGPELLGNIQVPKRAGYIRIIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM +FR GGV D+P ++ +CD F +
Sbjct: 126 GAQTPFFYIFRERELVYDLFEAATGMRMMHNFFRIGGVASDLPHGWIDKCLDFCDYFLTG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G V E+A WG SG M+R SG WDLRK YECY E
Sbjct: 186 VTEYQKLITRNPIFLERVEGVGIVGTEEAKNWGLSGPMLRASGVQWDLRKVDHYECYDEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D++I K GD RYLVR+ EM ES+KII+Q + + G GP + + +R
Sbjct: 246 DWEIQWQKEGDSLARYLVRIGEMMESIKIIQQALEGIPG----GPYENLEIRRFDRERDS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + +P E+Y VEAPKGE G++LI D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFISKKTSPTFELPKQELYVRVEAPKGELGIFLIGDQSGFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPELVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|227481175|emb|CAP62554.1| NADH dehydrogenase 49KDa subunit [Ceratophyllum demersum]
Length = 400
Score = 386 bits (991), Expect = e-105, Method: Composition-based stats.
Identities = 166/396 (41%), Positives = 226/396 (57%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ K+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 10 VPDKRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ 69
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E A E+L I++P R IRV+ E+ RI SHLL +
Sbjct: 70 YLPYVTRWDYLATMFTEAITVNAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFM 129
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE + +E A+G RM +FR GGV D+P ++ +CD F
Sbjct: 130 ADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNFFRIGGVAADLPHGWIDKCLDFCDYF 189
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ + + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YE Y
Sbjct: 190 LTGVVEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIPWDLRKVDHYESY 249
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E D++I K GD RYLVR+ EM ES+KII+Q + + G GP + +
Sbjct: 250 DEFDWEIQWQKEGDSLARYLVRINEMIESIKIIQQVLEGIPG----GPYENLEVRRFARP 305
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ E K + + + E+Y VEAPKGE GV+LI D P+R KIR P
Sbjct: 306 KDSEWNDFE-YRFISKKPSPSFELSKQELYVRVEAPKGELGVFLIGDNSVFPWRWKIRPP 364
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 365 GFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 400
>gi|313183961|ref|YP_004021815.1| NADH-plastoquinone oxidoreductase subunit 7 [Equisetum arvense]
gi|281371681|gb|ADA63614.1| NADH-plastoquinone oxidoreductase subunit 7 [Equisetum arvense]
Length = 393
Score = 386 bits (991), Expect = e-105, Method: Composition-based stats.
Identities = 173/393 (44%), Positives = 225/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ ++ GP HP+ HGVLRLI+ LDGE V P +G LHRG EK+ E +T +Q +P
Sbjct: 6 ARKDPMLVSMGPHHPSMHGVLRLIVTLDGENVLDCKPVLGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A EKL I IP R IRV+ E+ RI SHLL + DV
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEKLTNIRIPKRASYIRVIMLELSRIASHLLWLGPFMADV 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + ERE + +E A+G RM +FR GG+ DIP V+ +CD F
Sbjct: 126 GAQTPFFYILREREMIYDLFEAATGMRMMHNFFRIGGIAADIPYGWVDKCLDFCDYFLPK 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+N+ L+T N IF R +GT+ ++A WG SG M+R SG WDLRK YECY EL
Sbjct: 186 INEYERLITDNPIFLGRVEGVGTIGTQEAINWGLSGPMLRASGVQWDLRKVDHYECYDEL 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D++I K GD RYLVR+ EM+ES KII+Q + L G GP + + V R
Sbjct: 246 DWEIQWHKEGDSLARYLVRIGEMKESTKIIQQALKVLPG----GPYENLESRRVTEGRNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ K + + +P E Y VEAPKGE G++LI DG P+R KIR PG+
Sbjct: 302 KWNDFD-YQFISKKSSPTFKLPQQEHYVRVEAPKGELGIFLIGDGSVFPWRWKIRPPGFV 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L KG +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPPLVKGMKLADIMTILGSIDIIMGEVDR 393
>gi|309322121|ref|YP_003933937.1| NADH-plastoquinone oxidoreductase subunit 7 [Erodium texanum]
gi|197131394|gb|ACH47215.1| NADH-plastoquinone oxidoreductase subunit 7 [Erodium texanum]
gi|300069214|gb|ADJ66336.1| NADH-plastoquinone oxidoreductase subunit 7 [Erodium texanum]
Length = 393
Score = 386 bits (991), Expect = e-105, Method: Composition-based stats.
Identities = 167/396 (42%), Positives = 226/396 (57%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + +N GP HP+ HGVLRLIL LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 IPATRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E A EKL I++P R IR + E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEGITVNAPEKLGNIQVPKRASYIRTIMLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 123 ADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPHGWIDKCLDFCDYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ L + L+T N IF +R IG + EDA WG SG M+R SG WDLRK YECY
Sbjct: 183 LTGLAEYEKLITRNPIFLERVEGIGILGKEDAINWGLSGPMLRASGIQWDLRKIDNYECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E D+++ K GD R+LVR+ EMRES+K+I+Q + + G + P+
Sbjct: 243 KEFDWEVQWQKEGDSLARFLVRIGEMRESIKMIQQALEGIPGGPYENLEIRCFDRERYPE 302
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ S K + + +P E+Y VEAPKGE G++LI D + P+R KIR P
Sbjct: 303 WGGFEYRFIS-----KKPSPTFELPKQELYVRVEAPKGELGIFLIGDQSSFPWRWKIRPP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 358 GFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|298492343|ref|YP_003722520.1| NADH dehydrogenase ['Nostoc azollae' 0708]
gi|298234261|gb|ADI65397.1| NADH dehydrogenase (quinone) ['Nostoc azollae' 0708]
Length = 394
Score = 386 bits (991), Expect = e-105, Method: Composition-based stats.
Identities = 168/397 (42%), Positives = 231/397 (58%), Gaps = 10/397 (2%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +N GP HP+ HGVLRLI+ LDGE V +P IG LHRG EK+ E ++ + V
Sbjct: 5 ETRTEPMVLNMGPHHPSMHGVLRLIMTLDGEDVVDCEPVIGYLHRGMEKIAENRSTVMYV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R DY A M E A EKL GI +P R IRV+ E+ RI +HLL D
Sbjct: 65 PYVSRWDYAAGMFNEAVTVNAPEKLAGITVPKRASYIRVIMLELNRIANHLLWFGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRM-HAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E A+G RM + YFR GGV D+P V+ +C+ F
Sbjct: 125 VGAQTPFFYQFREREMIYDLWEAATGYRMVNNNYFRVGGVAADLPYGWVDKCLEFCEYFI 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R IGT+ ++A WG SG M+RGSG WDLRK YECY
Sbjct: 185 PKVDEYERLVTNNPIFRRRIEGIGTITRQEAINWGLSGPMLRGSGVKWDLRKVDHYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+++ GDC RY+VRM EMRESVKII+Q + L G G + K + +
Sbjct: 245 DFDWEVQWETVGDCLARYMVRMREMRESVKIIKQAIKGLPG----GSYENLEAKRLMAGK 300
Query: 302 ADMKRSMESLIHHF--KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
K + + F K + +P GE+Y+ VE+ KGE G+YL+ D P+R KIRA
Sbjct: 301 ---KSEWDGFDYQFVAKKVAPTFKIPTGEIYSRVESGKGELGIYLVGDNNVFPWRWKIRA 357
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +LQ + L +G ++ADV ILGS+D++ G VDR
Sbjct: 358 ADFNNLQILPHLLRGMKVADVVVILGSIDVIMGSVDR 394
>gi|284042618|ref|YP_003392958.1| NADH dehydrogenase I, D subunit [Conexibacter woesei DSM 14684]
gi|283946839|gb|ADB49583.1| NADH dehydrogenase I, D subunit [Conexibacter woesei DSM 14684]
Length = 413
Score = 386 bits (991), Expect = e-105, Method: Composition-based stats.
Identities = 168/392 (42%), Positives = 236/392 (60%), Gaps = 4/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ T+N GP HP+ HGVLRLIL L+GE+V V P IG +H G EK E K + + +P
Sbjct: 26 EQELMTVNMGPHHPSTHGVLRLILTLEGEMVRDVKPIIGYVHTGIEKTAEQKAYWKVIPV 85
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
+R+DY++ +A+ AVEKLL +++P R Q +RV++ E+ RI+SHL+ + T +D+G
Sbjct: 86 VERMDYLSYYFNAYAFCGAVEKLLEVDVPKRAQYLRVIHMELNRIMSHLVWLGTSCIDLG 145
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A+ + F ERE+++ +E +SG RMH YF+ GGV +DIP E + + +
Sbjct: 146 AIGVWWYCFREREQVLDLFEMSSGQRMHTRYFQVGGVIEDIPRGWTERVKRFTKTMRERS 205
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
S LL N IF QR + GTV E G G +G ++R +G WDLRK+ PY Y +
Sbjct: 206 EQYSALLDRNEIFLQRMRHTGTVDEETLLGLGVTGPLLRATGNPWDLRKAAPYCSYDDFR 265
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F IP+G GD YDRY VR E+ ES II Q ++ L GP D K+ P R ++
Sbjct: 266 FRIPVGTEGDNYDRYRVRHAEILESCAIIDQAIDGL----PEGPFITEDRKVALPPRHEL 321
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
SME+LIHHFKL TEG+ VP GEVY +E+P+GE G ++ SDG +KP R +R P + +
Sbjct: 322 ATSMEALIHHFKLVTEGFRVPPGEVYHPIESPRGELGCFVRSDGSSKPARVHMRDPSFVN 381
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
LQA + +AD+ A L LD + G VDR
Sbjct: 382 LQATAAATRDTYIADLVATLAMLDPILGGVDR 413
>gi|162148252|ref|YP_001602713.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Gluconacetobacter diazotrophicus PAl 5]
gi|209542892|ref|YP_002275121.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Gluconacetobacter diazotrophicus PAl 5]
gi|221272395|sp|A9HN95|NUOCD_GLUDA RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|161786829|emb|CAP56412.1| putative ADH-quinone oxidoreductase chain C/D [Gluconacetobacter
diazotrophicus PAl 5]
gi|209530569|gb|ACI50506.1| NADH dehydrogenase I, D subunit [Gluconacetobacter diazotrophicus
PAl 5]
Length = 601
Score = 386 bits (991), Expect = e-105, Method: Composition-based stats.
Identities = 160/393 (40%), Positives = 232/393 (59%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
S +N GP HP+ HGV R++L+L+GE + P IG HRG EK+ E +++ +P
Sbjct: 213 AHSDFMFLNLGPNHPSVHGVFRIVLQLEGERIVDAVPDIGFHHRGAEKMGERQSWHSFIP 272
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ + Y +AVEKL GI +P R Q+IRV+ +E+ R+ SHL+ T DV
Sbjct: 273 YTDRVDYLGGVMNNFPYVMAVEKLAGITVPPRAQMIRVMLAELFRVASHLVFYGTMTQDV 332
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G L+P + F +RE++ E G RMH A+FR GGV D+P I + D P
Sbjct: 333 GQLSPVFYMFSDRERVFEIIEAICGFRMHPAWFRIGGVAMDLPRGWDGLIRDFLDYLPPR 392
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L++ ++ N IF+ R + +G + +A WG +G +R G WDLR+ PY Y +L
Sbjct: 393 LDEYEKMVMRNPIFRARTIGVGAYDVSEAIAWGVTGPGLRACGLEWDLRRKVPYSGYDQL 452
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FDIP ++GDCYDR V + E+R+S++IIRQC++ + G + A PP RA
Sbjct: 453 EFDIPTAQNGDCYDRVRVHIAEIRQSLRIIRQCLDGMPA----GAIKAEHRLTTPPPRAR 508
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+E+LIHHF + G +P GE +A VEA KG +LISDGG YR +IR P +
Sbjct: 509 TMHDIETLIHHFLSVSWGPVIPPGEAHACVEATKGLNSYHLISDGGTMSYRTRIRTPSFP 568
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ + + +G +AD+ AI+GS+D V +VDR
Sbjct: 569 HLQMIPLISRGGMIADLIAIIGSIDFVMADVDR 601
>gi|108773213|ref|YP_635804.1| NADH dehydrogenase subunit 7 [Chara vulgaris]
gi|122243762|sp|Q1ACE3|NDHH_CHAVU RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|77157869|gb|ABA61910.1| 49 kDa subunit of NADH-plastoquinone oxidoreductase [Chara
vulgaris]
Length = 391
Score = 386 bits (991), Expect = e-105, Method: Composition-based stats.
Identities = 169/393 (43%), Positives = 231/393 (58%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+K+ S ++ GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 4 RKTNSMIVSMGPHHPSMHGVLRLIITLDGENVIDCEPVLGYLHRGMEKIAENRTIIQYLP 63
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A EKL I++P R IRV+ E+ RI SHLL + D+
Sbjct: 64 YVTRWDYLATMFTEAITINAPEKLANIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 123
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + ERE + +E A+G RM YFR GGV D+P ++ +C+ F
Sbjct: 124 GAQTPFFYILREREMIYDLFESATGMRMMHNYFRIGGVAVDLPYGWIDKCLDFCEYFLPK 183
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+N+ +L+T N IF +R IG + E+A WG SG M+R SG WDLRK YECY EL
Sbjct: 184 VNEYENLITQNPIFLKRVEGIGVINKEEAINWGLSGPMLRASGMEWDLRKVDHYECYDEL 243
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GDC RY+VR+ EMRESVKII+Q + + G GP + + + K++
Sbjct: 244 DWSVQWEKRGDCLARYIVRVGEMRESVKIIQQALKAIPG----GPYENLEARKLNTKKST 299
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + +P E Y +EA KGE G++LI D P+R KIR PG+
Sbjct: 300 QWNDFE-YQFISKKSSPTFKIPKQEHYVRLEASKGELGIFLIGDDNIFPWRWKIRPPGFI 358
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L G +LAD+ ILGS+DI+ GEVDR
Sbjct: 359 NLQVLPPLVNGMKLADIMTILGSIDIIMGEVDR 391
>gi|49574630|ref|NP_848116.2| NADH dehydrogenase subunit 7 [Adiantum capillus-veneris]
gi|68565790|sp|Q85FG9|NDHH_ADICA RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|48476045|gb|AAP29447.2| NADH dehydrogenase subunit 7 [Adiantum capillus-veneris]
Length = 394
Score = 386 bits (991), Expect = e-105, Method: Composition-based stats.
Identities = 159/393 (40%), Positives = 220/393 (55%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ ++ GP HP+ HGVLRL++ L GE V + +G LHRG EK+ E +T Q +P
Sbjct: 6 EDIDPVVVSMGPHHPSMHGVLRLVVALQGENVVDCELILGYLHRGMEKIAENRTTSQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A EKL I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAVTVNAPEKLANIQIPERASYIRVIMLELSRIASHLLWLGPFLADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +C
Sbjct: 126 GAQTPFFYIFREREMIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCQYCLPK 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + ++A WG SG +R SG WDLRK YECY +L
Sbjct: 186 IYEYERLVTKNPIFLKRVQGVGFINRQEAINWGLSGPSLRASGVQWDLRKIDHYECYDKL 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ I GD RYLVR+ EM+ES+ I+RQ + L G GP + + + K+
Sbjct: 246 DWQIQWQGEGDSLARYLVRIDEMKESINILRQALKLLPG----GPYENLEGRRLVQKKDK 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ + + K + +P E Y VEAPKGE G++LI D P+R KIR PG+
Sbjct: 302 IDWNGFNYQFVGKKSSPTLKLPKQEHYVRVEAPKGELGIFLIGDDSVFPWRLKIRPPGFI 361
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L +G +LAD+ ILGS+DI+ GEVDR
Sbjct: 362 NLQIVPQLIRGMKLADIVTILGSIDIIMGEVDR 394
>gi|298566795|gb|ADI86518.1| NADH-plastoquinone oxidoreductase subunit 7 [Dactylis glomerata
subsp. hackelii]
Length = 393
Score = 386 bits (991), Expect = e-105, Method: Composition-based stats.
Identities = 164/393 (41%), Positives = 222/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAEXXXIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YE Y++
Sbjct: 186 IVEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDLYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q + ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRISEMRESIKIIQQAIEKIPG----GPYENLEVRRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YKFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|194033202|ref|YP_002000541.1| NADH dehydrogenase subunit 7 [Brachypodium distachyon]
gi|218527817|sp|B3TNA5|NDHH_BRADI RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|193075610|gb|ACF08693.1| NADH dehydrogenase 49kDa subunit [Brachypodium distachyon]
Length = 393
Score = 386 bits (991), Expect = e-105, Method: Composition-based stats.
Identities = 166/393 (42%), Positives = 225/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P +E +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIEKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YE Y++
Sbjct: 186 VVEYQQLITQNPIFLERVERVGFISGEEAVNWGLSGPMLRASGIRWDLRKVDLYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + ++
Sbjct: 246 GWKVQWQKEGDSLARYLVRIGEMRESIKIIQQAVEKIPG----GPYENLEVRRFKKEKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y +EAPKGE G+YL+ D G P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRIEAPKGELGIYLVGDDGLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|254480948|ref|ZP_05094194.1| putative NADH dehydrogenase, subunit C subfamily [marine gamma
proteobacterium HTCC2148]
gi|41582332|gb|AAS07946.1| NADH-quinone oxidoreductase, C/D subunit [uncultured marine
bacterium 463]
gi|214038743|gb|EEB79404.1| putative NADH dehydrogenase, subunit C subfamily [marine gamma
proteobacterium HTCC2148]
Length = 583
Score = 385 bits (990), Expect = e-105, Method: Composition-based stats.
Identities = 158/394 (40%), Positives = 235/394 (59%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ + +N GP HP+ HGV R+ L+LDGE++ P IG HRG EK+ E +T+ +
Sbjct: 194 TEDTEFMFLNLGPNHPSVHGVFRIALQLDGEVIVDAVPDIGYHHRGAEKMAERQTWHSFI 253
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR+DY+ + AY +A+E+L GIE+P R ++IR++ +E+ RI SHL+ T A D
Sbjct: 254 PYTDRIDYLGGVMNNLAYVMAIEQLAGIEVPPRAKIIRIMMAELFRISSHLVFYGTFAQD 313
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VG ++P + F +RE+L E +G RMH A+FR GGV QD+P + + + DS P+
Sbjct: 314 VGQMSPVFYMFADRERLFGIIEAITGGRMHPAWFRIGGVAQDLPQGWDKMVREFIDSMPA 373
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++ + N I KQR V IG +A WG +G +R +G +DLR+ +PY Y E
Sbjct: 374 RMDHYQTMAMDNSILKQRTVGIGEYDTAEALSWGITGASLRATGMDFDLRRDRPYGGYDE 433
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+F++PIG GD YDR VR+ E+R+S++IIRQC++ + GP + PP +
Sbjct: 434 FEFEVPIGNRGDSYDRAAVRVEEIRQSLRIIRQCLDNM----PEGPYKSEHKLTTPPPKE 489
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ +E+LIHHF + G +PVGE +EA KG +L+SDGG YR +IR P +
Sbjct: 490 RTMQDIETLIHHFLSVSWGPVMPVGEASFPIEATKGINNYHLVSDGGTTSYRTRIRTPSF 549
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
LQ + CKG + D+ AI+ S+D V +VDR
Sbjct: 550 PALQQIPDFCKGLLIPDLIAIIASIDFVMADVDR 583
>gi|187764085|ref|YP_001876534.1| NADH dehydrogenase subunit 7 [Dictyostelium fasciculatum]
gi|160688793|gb|ABX45208.1| NADH dehydrogenase subunit 7 [Dictyostelium fasciculatum]
Length = 406
Score = 385 bits (990), Expect = e-105, Method: Composition-based stats.
Identities = 231/403 (57%), Positives = 300/403 (74%), Gaps = 11/403 (2%)
Query: 1 MDKKKS-RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFL 59
D+ K ++FT+NFGPQHPAAHGVLRLI+ELD E V+RVDPHIGLLHRGTEKLIE KT+
Sbjct: 8 FDEVKVLKNFTLNFGPQHPAAHGVLRLIVELDSETVKRVDPHIGLLHRGTEKLIEYKTYT 67
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLL------GIEIPIRGQLIRVLYSEIGRILSHL 113
QA+PYFDRLDYV+ QEHAY+LAVE+L +EIP+R ++IR+L+SEI RIL+H+
Sbjct: 68 QALPYFDRLDYVSMQVQEHAYSLAVERLYLQTHEIELEIPVRAKVIRILFSEITRILNHI 127
Query: 114 LNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDI 173
L TT AMDVGALTP LW FEEREKLM FYER SG+RMH+AY RPGGV D+P ++ +DI
Sbjct: 128 LATTTHAMDVGALTPFLWAFEEREKLMEFYERVSGARMHSAYIRPGGVAFDLPMQISDDI 187
Query: 174 GCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRK 233
+C + L +I D+L NRI+KQR V+IGTV ED+ GF+GVM+RG+G +D+RK
Sbjct: 188 YAFCKQYKRRLEEIEDMLINNRIWKQRLVDIGTVTAEDSLNAGFTGVMLRGAGLLYDIRK 247
Query: 234 SQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASD 293
+ PY+ Y + DFDI IG+ + Y R+++R+ EM +S+KII Q +N L K G +
Sbjct: 248 NFPYDDYDKYDFDIIIGEENNSYTRFILRIKEMYQSLKIIEQALNFL----KPGLIKIEG 303
Query: 294 PKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPY 353
+ P RA +K+ MES I+HFK ++EG+ +P E+Y VEAPKGEFGVYL S+ KPY
Sbjct: 304 LNLTSPDRAFVKKDMESCINHFKFFSEGFVIPQNEIYTFVEAPKGEFGVYLASNNTAKPY 363
Query: 354 RCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
RC+I+APG+ HLQ ++ + K H LADV ++G+ DIVFGEVDR
Sbjct: 364 RCRIKAPGFLHLQGLDMMSKNHLLADVVTLIGTQDIVFGEVDR 406
>gi|15606519|ref|NP_213899.1| NADH dehydrogenase I chain D [Aquifex aeolicus VF5]
gi|81343826|sp|O67335|NUCD2_AQUAE RecName: Full=NADH-quinone oxidoreductase subunit C/D 2; AltName:
Full=NADH dehydrogenase I subunit C/D 2; AltName:
Full=NDH-1 subunit C/D 2
gi|2983737|gb|AAC07298.1| NADH dehydrogenase I chain D [Aquifex aeolicus VF5]
Length = 586
Score = 385 bits (990), Expect = e-105, Method: Composition-based stats.
Identities = 171/393 (43%), Positives = 242/393 (61%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
KK +N+GP HP HG + + +L+GE V + D +G LHRG EKL E + Q +P
Sbjct: 194 KKKAELVLNWGPLHPGTHGTIWFLFDLEGEKVVQSDVILGQLHRGMEKLAENLHYFQFIP 253
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY++ + E AY VE+LLG+E+P + + IR +++E+ RI SHLL + T A+D+
Sbjct: 254 YTDRMDYISAICNELAYVETVERLLGVEVPEKARYIRTMFAELQRINSHLLWLGTGALDL 313
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALT L+ F EREK+M E +G R+ + + R GGVH D+ ++ + + FP+
Sbjct: 314 GALTVFLYAFREREKIMDIIEGNAGYRLTSCFLRIGGVHYDLAEGTLDVVKHFIKDFPNR 373
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L + LLT NRI+ +R ++G + ED +G SG + RGSG +DLRK QPY Y E+
Sbjct: 374 LKEYHTLLTRNRIWLRRTKDVGVITREDVHNYGLSGPVARGSGVPYDLRKLQPYAAYDEV 433
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FDIP+G+ GD YDRYLVRM EM +SV+II QCV +L K P + V P + D
Sbjct: 434 EFDIPVGEVGDVYDRYLVRMEEMAQSVRIIEQCVQKLEKLPKDAPYLNKEHPAVIPPKED 493
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ +ES++ F++ G P GEVY A E P+GE G ++ S GG KPYR +IR+
Sbjct: 494 VFHDLESMVKSFRVVVHGEDAPPGEVYFAGENPRGELGFFIYSKGGGKPYRTRIRSGALY 553
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L L +G +AD A+LGSLD V GE DR
Sbjct: 554 NLSIFPKLIQGRTIADAIALLGSLDPVVGETDR 586
>gi|298566799|gb|ADI86520.1| NADH-plastoquinone oxidoreductase subunit 7 [Parapholis incurva]
Length = 393
Score = 385 bits (990), Expect = e-105, Method: Composition-based stats.
Identities = 162/393 (41%), Positives = 221/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTXAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YE Y++
Sbjct: 186 IVEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDLYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q + ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRISEMRESIKIIQQAIEKIPG----GPYENLEVRRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YKFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ G DR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGXXDR 393
>gi|300087935|ref|YP_003758457.1| NADH dehydrogenase I subunit D [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299527668|gb|ADJ26136.1| NADH dehydrogenase I, D subunit [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 367
Score = 385 bits (990), Expect = e-105, Method: Composition-based stats.
Identities = 160/395 (40%), Positives = 224/395 (56%), Gaps = 30/395 (7%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K+ + IN GPQHP+ HGV RL L LDGE++ V+P G LHRG EKL E++ + + +
Sbjct: 2 TLKTDHYVINIGPQHPSTHGVFRLRLTLDGEVIIDVEPIFGYLHRGMEKLAESRNYTKNI 61
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DRLDY++ M AY +AVE L+ IE+P R Q IRV+ +E+ RI +HL V D
Sbjct: 62 PLTDRLDYLSSMINNQAYCMAVEDLMKIEVPERAQYIRVIMAELQRISAHLAGVGFFLND 121
Query: 123 VG-ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
+G +TP L+ F EREK++ ++ G R++ Y R GGV D+P E + + + P
Sbjct: 122 IGAFMTPMLYMFREREKIVELFDMVCGQRLNYNYMRFGGVAMDLPEEFLPALKKLLNEMP 181
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+N+ L+T N I R +G + E A +G ++RGSG WDLRK +PY Y
Sbjct: 182 GFINEYDQLITTNEIVLARCKGVGVLPRELAINAATAGPVLRGSGIEWDLRKKRPYSVYD 241
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
FDIP G++GD YDRY+VR+ EMR+SV+I++Q V +L G PK++
Sbjct: 242 RFQFDIPTGENGDTYDRYMVRLEEMRQSVRILKQAVEQLPD----GEYIGKAPKLI---- 293
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
P GE Y AVE KGE G Y+++DG YR +RAP
Sbjct: 294 ---------------------RPPAGETYTAVEGAKGELGFYVVADGSENAYRWHVRAPS 332
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L A+ + G ++AD+ AI GS+DIV GEVDR
Sbjct: 333 LINLTALREMVIGWKVADLMAIFGSIDIVMGEVDR 367
>gi|82702144|ref|YP_411710.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Nitrosospira multiformis ATCC 25196]
gi|123544778|sp|Q2YAA3|NUOCD_NITMU RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|82410209|gb|ABB74318.1| NADH dehydrogenase subunit D / NADH dehydrogenase subunit C
[Nitrosospira multiformis ATCC 25196]
Length = 608
Score = 385 bits (990), Expect = e-105, Method: Composition-based stats.
Identities = 158/391 (40%), Positives = 232/391 (59%), Gaps = 4/391 (1%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ +N GP HP+ HGV R++L+LDGE + P IG HRG EK+ E +++ +PY
Sbjct: 222 TDFMFLNLGPNHPSVHGVFRIVLQLDGEEIIDAVPEIGFHHRGAEKMGERQSWHTYIPYT 281
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DR+DY+ + Y LAVEKL GIE+P R +++RV+ +E RI SHL+ T D+GA
Sbjct: 282 DRIDYLGGVMNNLPYVLAVEKLAGIEVPDRVKVMRVMMAEFFRIASHLVFYGTFTQDLGA 341
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
L+P + F +RE++ E G RMH +++R GGV QD+P + + D P+ L+
Sbjct: 342 LSPVFFMFTDRERVFDVVEAICGGRMHPSWYRIGGVAQDLPNGWDRMVRDFLDYMPARLD 401
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ + GNRI K R +G +++A WG +G +R G WD RK++PY Y + +F
Sbjct: 402 EYDKIAVGNRILKARTRGVGGYSIDEAIEWGVTGPNLRACGFEWDFRKARPYSGYDQFEF 461
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
D+P G+HGDCYDR VR+ E+R+S++II QC+ + G A P PP +
Sbjct: 462 DVPTGQHGDCYDRCAVRVQEIRQSLRIIDQCLENMPA----GAHKADHPLTTPPLKKHTL 517
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
+E+LI HF + G +P GE + +EA KG G YLISDG YR +IR P + HL
Sbjct: 518 HDIETLIDHFLGVSWGPVIPPGEAFVGIEATKGNNGYYLISDGNTTAYRVRIRTPSFPHL 577
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Q + + +G ++D+ AILGS+D V +VDR
Sbjct: 578 QMIPLISRGLMISDLIAILGSIDFVMADVDR 608
>gi|290489840|gb|ADD31327.1| NADH-plastoquinone oxidoreductase subunit 7 protein [Trochodendron
aralioides]
Length = 393
Score = 385 bits (990), Expect = e-105, Method: Composition-based stats.
Identities = 164/393 (41%), Positives = 225/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRL++ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLMVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E+L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F +
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPHGWIDKCLDFCDYFLTG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N +F +R +G + E+A WG SG M+R SG WDLRK YECY E
Sbjct: 186 VAEYQKLITRNPVFLERVEGVGIIGGEEAINWGLSGPMLRASGIEWDLRKVDHYECYDEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+++ K GD RYLVR+ EM ES+KII+Q + + G GP + + R
Sbjct: 246 DWEVQWQKEGDSLARYLVRISEMTESIKIIQQALEGIPG----GPYENLEVRRFDRARGS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G++LI D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLSKKPSPTFELAKQELYVRVEAPKGELGIFLIGDQSVFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|114329803|ref|YP_740621.1| NADH-plastoquinone oxidoreductase subunit 7 [Platanus occidentalis]
gi|122165987|sp|Q09FZ0|NDHH_PLAOC RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|114054441|gb|ABI49835.1| NADH-plastoquinone oxidoreductase subunit 7 [Platanus occidentalis]
Length = 393
Score = 385 bits (990), Expect = e-105, Method: Composition-based stats.
Identities = 164/393 (41%), Positives = 222/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPVLGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E+L I++P R IR + E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEQLGNIQVPKRASYIRAIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F +
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPHGWIDKCLDFCDYFLTG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK Y CY E
Sbjct: 186 IAEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYGCYDEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+++ K GD RYLVR+ EM ESVKII+Q + + G GP + + R
Sbjct: 246 DWEVQWQKEGDSLARYLVRISEMTESVKIIQQALEGIPG----GPYENLEVRRFDRARDS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G++LI D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFISKKPSPTFELSKQELYVRVEAPKGELGIFLIGDQSVFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|295137000|ref|YP_003587547.1| NADH dehydrogenase subunit 7 [Pisum sativum]
gi|293338572|gb|ADE43545.1| NADH dehydrogenase subunit 7 [Pisum sativum]
Length = 393
Score = 385 bits (989), Expect = e-105, Method: Composition-based stats.
Identities = 161/396 (40%), Positives = 225/396 (56%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 IPATRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E E+L I++P R IRV+ E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE + +E A+G RM +FR GGV D+P ++ +C+ F
Sbjct: 123 ADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNFFRIGGVAADLPYGWIDKCFDFCNYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ + + L+T N IF +R +G V E+ WG SG M R SG WDLR+ YECY
Sbjct: 183 LTRVIEYQKLITRNPIFLERVEGVGVVGREEVINWGLSGPMPRASGIQWDLREVDNYECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E D+++ K GD RYLVR+ EM ES+KII+Q + + G GP + + +
Sbjct: 243 EEFDWEVQWQKEGDSLARYLVRIGEMVESIKIIQQALEGIPG----GPYENFEIRCFDRE 298
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ E K + + +P E+Y +EAPKGE G++LI D P+R KIR P
Sbjct: 299 KEPEWNDFE-YRFIGKKSSPTFDLPKQELYVRIEAPKGELGIFLIGDQNGFPWRWKIRPP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 358 GFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|197116578|ref|YP_002137005.1| trifunctional NADH dehydrogenase subunit I B/C/D [Geobacter
bemidjiensis Bem]
gi|218528047|sp|B5E972|NUBCD_GEOBB RecName: Full=NADH-quinone oxidoreductase subunit B/C/D; AltName:
Full=NADH dehydrogenase I subunit B/C/D; AltName:
Full=NDH-1 subunit B/C/D
gi|197085938|gb|ACH37209.1| NADH dehydrogenase I, B/C/D subunits [Geobacter bemidjiensis Bem]
Length = 794
Score = 385 bits (989), Expect = e-105, Method: Composition-based stats.
Identities = 161/396 (40%), Positives = 230/396 (58%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
D+ + +N GPQHP HGV+R +L+L GE + +D IG HR EK E + + Q
Sbjct: 403 FDRVDDETLILNLGPQHPGTHGVIRFVLKLSGEEIVDMDSDIGYHHRAAEKTGERQNWHQ 462
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY DR+DY++ + AY +VE L GIEIP R IRV+ E+ RI +HL+ + T A
Sbjct: 463 YIPYTDRVDYLSGVQNNLAYLNSVETLCGIEIPDRAIYIRVMLCELFRIANHLVWLGTFA 522
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA+TP + F +REK+ E +G RMH A+FR GGV +D+P E + + + F
Sbjct: 523 SDLGAMTPVFYTFTDREKIFDIVEFITGGRMHPAWFRIGGVAEDLPEGWQEKVHSFLEWF 582
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P L + LL+GN IF R + + ++ A WG +G +R AWDLRK PY Y
Sbjct: 583 PGRLAEYEKLLSGNPIFVARLKGVSAITVDTALEWGITGPNLRACDFAWDLRKKMPYGGY 642
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+F++ + GDCY RY VRM EMR+S+ I+RQ + G G + D + P+
Sbjct: 643 DRFEFEVATAQGGDCYARYQVRMEEMRQSLSIVRQAAAGMPG----GRFISPDYRYTLPQ 698
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ D +ESLIHHF T G P GE YA +E KGE+G + +SDG + YR +IR
Sbjct: 699 KRDALEDIESLIHHFVNSTRGISPPKGECYAPIEGSKGEYGYFAVSDGLHTAYRMRIRTA 758
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ H+Q++ L +G ++D AILGSLD V ++DR
Sbjct: 759 TFPHIQSLPVLSRGWLVSDFLAILGSLDFVLSDLDR 794
>gi|9757433|dbj|BAB08104.1| NADH dehydrogenase subunit 7 [Physarum polycephalum]
Length = 401
Score = 385 bits (989), Expect = e-105, Method: Composition-based stats.
Identities = 234/401 (58%), Positives = 284/401 (70%), Gaps = 15/401 (3%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+++ INFGPQHPAAHGVLR+++EL+GE+++ DPHIGLLHRGTEKLIE K FLQ++PYFD
Sbjct: 5 KNYLINFGPQHPAAHGVLRMVVELNGEVIQNCDPHIGLLHRGTEKLIEHKNFLQSLPYFD 64
Query: 67 RLDYVAPMNQEHAYALAVEKLLG----------IEIPIRGQLIRVLYSEIGRILSHLLNV 116
RLDYV+ M QEHAY+LAVE L I+IP R + IRVL+ EI RIL+HLL V
Sbjct: 65 RLDYVSMMAQEHAYSLAVENLFNDLCAKALLPYIDIPERARYIRVLFLEITRILNHLLAV 124
Query: 117 TTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCW 176
TT AMDVGALTP LW FEEREKL+ FYER SG+RMH AY RPGGV D+P L+ DI +
Sbjct: 125 TTHAMDVGALTPFLWAFEEREKLIEFYERVSGARMHTAYIRPGGVAYDLPIGLLNDIYEF 184
Query: 177 CDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQP 236
F LND+ +LLT NRIFK R VNIG V + A FSGVM+RGSG +DLRK
Sbjct: 185 LTPFSKKLNDMEELLTDNRIFKDRVVNIGKVTYDVAKDHAFSGVMVRGSGIPYDLRKIYN 244
Query: 237 YECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKI 296
YE Y+E +F IP+G +GDCYDR+++R+ EMRES II Q R+ P K
Sbjct: 245 YENYNEFNFKIPVGLNGDCYDRFMIRVTEMRESCSIIAQVCERITDGFITVPF----AKF 300
Query: 297 VPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGN-KPYRC 355
V P R+DMK ME+LI HFK ++ G VP +Y +VEAPKGEFG + S N KPYRC
Sbjct: 301 VNPTRSDMKHLMEALIQHFKFFSNGIIVPEAIMYTSVEAPKGEFGTLIASYQNNTKPYRC 360
Query: 356 KIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
IRAPG+ HL A+ + + H LADV AI+G+LDIVFGEVDR
Sbjct: 361 HIRAPGFHHLAAINRVSQNHSLADVVAIIGTLDIVFGEVDR 401
>gi|253698814|ref|YP_003020003.1| trifunctional NADH dehydrogenase I subunit B/C/D [Geobacter sp.
M21]
gi|251773664|gb|ACT16245.1| NADH dehydrogenase I, D subunit [Geobacter sp. M21]
Length = 794
Score = 385 bits (989), Expect = e-105, Method: Composition-based stats.
Identities = 164/396 (41%), Positives = 230/396 (58%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
D+ + +N GPQHP HGV+R +L+L GE + +D IG HR EK E + + Q
Sbjct: 403 FDRVDDETLILNLGPQHPGTHGVIRFVLKLSGEEIVDMDSDIGYHHRAAEKTGERQNWHQ 462
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY DR+DY++ + AY +VE L GIEIP R IRV+ E+ RI +HL+ + T A
Sbjct: 463 YIPYTDRVDYLSGVQNNLAYLNSVETLCGIEIPDRAIYIRVMLCELFRIANHLVWLGTFA 522
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA+TP + F +REK+ E +G RMH A+FR GGV +D+P E + + + F
Sbjct: 523 SDLGAMTPVFYTFTDREKIFDIVEFITGGRMHPAWFRIGGVAEDLPEGWQEKVHSFLEWF 582
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P+ L + LLTGN IF R + + L+ A WG SG +R AWDLRK PY Y
Sbjct: 583 PARLAEYEKLLTGNPIFVARLKGVSAITLDTALEWGISGPNLRACDFAWDLRKKIPYGGY 642
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+F++ GDCY RY VRM EMR+S+ I+RQ + G G + D + P+
Sbjct: 643 DRFEFEVATAHGGDCYARYKVRMEEMRQSLSIVRQAAAGMPG----GRFISPDYRYTLPQ 698
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ D +ESLIHHF T G P GE YA +E KGE+G + +SDG + YR +IR
Sbjct: 699 KRDTLEDIESLIHHFVNATRGISPPKGECYAPIEGSKGEYGYFAVSDGLHTAYRMRIRTA 758
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ H+Q++ L +G ++D AILGSLD V ++DR
Sbjct: 759 TFPHIQSLPVLSRGWLVSDFLAILGSLDFVLSDLDR 794
>gi|197131396|gb|ACH47216.1| NADH-plastoquinone oxidoreductase subunit 7 [Geranium carolinianum]
Length = 393
Score = 385 bits (989), Expect = e-105, Method: Composition-based stats.
Identities = 167/396 (42%), Positives = 227/396 (57%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + +N GP HP+ HGVLRLIL LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 IPATRKDLMIVNMGPHHPSMHGVLRLILTLDGENVIDCEPILGYLHRGMEKIAENRTIIQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E A EKL I++P R IR + E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEGITVNAPEKLGNIQVPKRASYIRTIMLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 123 ADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPHGWIDKCLDFCDYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ L + L+T N IF +R IG + E+A WG SG M+R SG WDLRK YECY
Sbjct: 183 LTGLAEYEKLITRNPIFLERVEGIGIIGKEEAINWGLSGPMLRASGIQWDLRKIDTYECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+E D+++ K GD R+LVR+ EMRES+KII+Q + + G + P+
Sbjct: 243 NEFDWEVQWQKEGDSLARFLVRIGEMRESIKIIQQALEGIPGGPYENLEIRCFDRERYPE 302
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ S K + + +P E+Y VEAPKGE G++LI D + P+R KIR P
Sbjct: 303 WGGFEYRFVS-----KKPSPTFELPKQELYVRVEAPKGELGIFLIGDQSSFPWRWKIRPP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 358 GFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|332971176|gb|EGK10140.1| NADH-quinone oxidoreductase subunit C/D [Psychrobacter sp.
1501(2011)]
Length = 596
Score = 385 bits (989), Expect = e-105, Method: Composition-based stats.
Identities = 153/393 (38%), Positives = 220/393 (55%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+AHG RL+L+LDGE + P IG HRG EK+ E +T+ +P
Sbjct: 208 RDEDFMFLNLGPNHPSAHGAFRLVLQLDGEEIIDCIPDIGYHHRGAEKMAERQTWHSYIP 267
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ + E Y +AVE+L GI +P R Q IRV+ SE RI ++LL T D
Sbjct: 268 YTDRIDYLGGVMNELPYVMAVEQLAGITVPERAQTIRVMMSEFFRITNNLLYFGTFIQDA 327
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP + F +R+K E +G RMH A+FR GG D+P + + D P
Sbjct: 328 GGMTPVFYMFTDRQKAYDVIEAVTGYRMHPAWFRIGGTAADLPRGWQRLVREFLDWMPKR 387
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L++ N + K R N+ + A WG +G +R +G +DLRK++PY Y
Sbjct: 388 LDEYVKAAMENSVLKGRTQNVAQYDAKQALAWGVTGAGLRATGVDFDLRKARPYMGYENY 447
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DF++P+G +GD YDR +V++ E+R+S++IIRQC++ + GP A P VPP +
Sbjct: 448 DFEVPLGYNGDAYDRCMVKIEEIRQSLRIIRQCMDNM----PSGPYKADHPLAVPPPKDR 503
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+E+LI+HF + G +P GE VEA KG Y+ SD YR +IR P +A
Sbjct: 504 TLNDIETLINHFISVSWGPVMPAGEASMMVEATKGINSYYITSDRSTMSYRTRIRTPTFA 563
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ M + G ++DV L S+DIV + DR
Sbjct: 564 HLQQMPSVINGSLVSDVIIYLASIDIVMADTDR 596
>gi|301353364|ref|YP_003795637.1| NADH-plastoquinone oxidoreductase subunit 7 [Pteridium aquilinum
subsp. aquilinum]
gi|301016282|gb|ADK47569.1| NADH-plastoquinone oxidoreductase subunit 7 [Pteridium aquilinum
subsp. aquilinum]
Length = 396
Score = 385 bits (988), Expect = e-105, Method: Composition-based stats.
Identities = 168/396 (42%), Positives = 230/396 (58%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M KK T++ GP HP+ HGVLRL++ DGE V +P +G LHRG EK+ E +T LQ
Sbjct: 1 MHLKKIDPVTVSLGPHHPSMHGVLRLVVASDGEDVIDCEPVLGYLHRGMEKIAENRTILQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E A EKL I++P R IRV+ E+ RI SHLL +
Sbjct: 61 YLPYVTRWDYLATMFTEAVTVNAPEKLANIQVPGRASYIRVIMLELSRIASHLLWLGPFL 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE + +E A+G RM YFR GGV D+P V+ +CD
Sbjct: 121 ADIGAQTPFFYIFREREMIYDLFEAATGMRMMHNYFRIGGVAADLPYGWVDKCLDFCDYC 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+++ L+T N IF +R +G + ++A WG SG + R SG WDLRK YECY
Sbjct: 181 LPKIHEYERLITKNPIFLKRVTGVGFISRQEAINWGLSGPVSRASGVQWDLRKIDHYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
LD++I K GD RYLVR+ EM+ES+KIIRQ + L G GP + + + +
Sbjct: 241 DNLDWEIQWQKEGDSLARYLVRIDEMKESIKIIRQALKLLPG----GPYENLEGRRLVQQ 296
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ ++ + + K + +P E Y VEAPKGE G++ I D P+R KIR P
Sbjct: 297 QGEVDWNGFNYQFVGKKSSPTLKLPKQEHYVRVEAPKGELGIFSIGDDNVFPWRWKIRPP 356
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L KG +LAD++ ILGS+DI+ GEVDR
Sbjct: 357 GFTNLQILSQLIKGMKLADITTILGSIDIIMGEVDR 392
>gi|282901110|ref|ZP_06309042.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Cylindrospermopsis
raciborskii CS-505]
gi|281194009|gb|EFA68974.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Cylindrospermopsis
raciborskii CS-505]
Length = 394
Score = 385 bits (988), Expect = e-105, Method: Composition-based stats.
Identities = 167/395 (42%), Positives = 229/395 (57%), Gaps = 6/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +N GP HP+ HGVLRLI+ LDGE V +P IG LHRG EK+ E ++ + V
Sbjct: 5 ETRTEPMVLNMGPHHPSMHGVLRLIVTLDGEDVVDCEPVIGYLHRGMEKIAENRSTIMYV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R DY A M E A EKL GI++P R IRV+ E+ RI +HLL D
Sbjct: 65 PYVSRWDYAAGMFNEAVTVNAPEKLAGIKVPKRASYIRVIMLELNRIANHLLWFGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRM-HAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E A+G RM + YFR GGV D+P V+ +CD F
Sbjct: 125 VGAQTPFFYQFREREMIYDLWEAATGYRMVNNNYFRVGGVAVDLPYGWVDKCEEFCDYFL 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R IGT+ E+A W SG M+RGSG WDLRK YECY
Sbjct: 185 PKVDEYERLVTNNPIFRRRIEGIGTITREEAINWSLSGPMLRGSGVKWDLRKVDHYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+++ GDC RY+VRM EMRESVKII+Q + L G GP + K +
Sbjct: 245 DFDWEVQWETAGDCLARYMVRMREMRESVKIIKQALKGLPG----GPYENLEAKRMMAGP 300
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
S + + K + +P GE+Y+ VE+ KGE G+YL+ D P+R KIR
Sbjct: 301 KSEWDSFD-YQYVAKKVAPTFKIPAGEIYSRVESGKGELGIYLVGDNNVFPWRWKIRPAD 359
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +LQ + L +G ++AD+ ILGS+D++ G VDR
Sbjct: 360 FNNLQILPGLLRGVKVADIVVILGSIDVIMGSVDR 394
>gi|290489808|gb|ADD31311.1| NADH-plastoquinone oxidoreductase subunit 7 protein [Meliosma aff.
cuneifolia Moore 333]
Length = 393
Score = 385 bits (988), Expect = e-105, Method: Composition-based stats.
Identities = 165/392 (42%), Positives = 226/392 (57%), Gaps = 5/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K +N GPQHP+ HGVLRL++ LDGE V +P +G LHRG EK+ E +T +Q +PY
Sbjct: 7 KKDLMIVNMGPQHPSMHGVLRLVVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPY 66
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
R DY+A M E A E+L I++P R IRV+ E+ RI SHLL + D+G
Sbjct: 67 VTRWDYLATMFTEAITVNAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIG 126
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F + +
Sbjct: 127 AQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPHGWIDKCLDFCDYFLTGV 186
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ +L+ N IF +R +G + E+A WG SG M+R SG WDLRK YECY E D
Sbjct: 187 TEYQNLIRRNPIFLERVEGVGIIGREEAINWGLSGPMLRASGIQWDLRKVDHYECYDEFD 246
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
+++ K GD RYLVR+ EM ES+KII+Q + + G GP + + +
Sbjct: 247 WEVQWQKEGDSLARYLVRISEMTESIKIIQQALEGIPG----GPYENLEVRRFDRAKDSE 302
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
E K + + + E+Y VEAPKGE G++LI D P+RCKIR PG+ +
Sbjct: 303 WNDFE-YRFISKKPSPTFELSKQELYVRVEAPKGELGIFLIGDQSVFPWRCKIRPPGFIN 361
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 362 LQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|225544178|ref|YP_002720168.1| ndhH [Jatropha curcas]
gi|224979619|gb|ACN72746.1| ndhH [Jatropha curcas]
Length = 393
Score = 385 bits (988), Expect = e-105, Method: Composition-based stats.
Identities = 165/392 (42%), Positives = 223/392 (56%), Gaps = 5/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +PY
Sbjct: 7 RKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPY 66
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
R DY+A M E E L I++P R IRV+ E+ RI SHLL + D+G
Sbjct: 67 VTRWDYLATMFTEAITVNGPELLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIG 126
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F + +
Sbjct: 127 AQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPHGWIDKCLDFCDYFLTRV 186
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ L+T N IF +R +G V E+A WG SG M+R SG WDLRK YECY E D
Sbjct: 187 AEYQKLITRNPIFLERVEGVGIVGTEEAINWGLSGPMLRASGVQWDLRKMDRYECYDEFD 246
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
+++ K GD RYLVR+ E ES+KII+Q + + G + K P+ D
Sbjct: 247 WEVQWQKEGDSLARYLVRIGETMESIKIIQQALEGIPGGPYENLETRRFDKEGDPEWNDF 306
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
+ S K + + +P E+Y VEAPKGE G++LI D P+R KIR PG+ +
Sbjct: 307 EYRFIS-----KRTSPTFELPKQELYVRVEAPKGELGIFLIGDQSGFPWRWKIRPPGFIN 361
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 362 LQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|325210980|ref|YP_004286059.1| NADH-plastoquinone oxidoreductase subunit 7 [Gossypium thurberi]
gi|290775842|gb|ADD62338.1| NADH-plastoquinone oxidoreductase subunit 7 [Gossypium thurberi]
Length = 393
Score = 385 bits (988), Expect = e-105, Method: Composition-based stats.
Identities = 166/396 (41%), Positives = 226/396 (57%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 LSATEKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVVDCEPVLGYLHRGMEKIAENRTIIQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E E+L I++P R IRV+ E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 123 ADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPYGWLDKCLDFCDYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ + + L+T N IF +R IG + E+A WG SG M+R SG WDLRK YECY
Sbjct: 183 LTGIVEYQKLITRNPIFLERVEGIGVIGGEEAINWGLSGPMLRASGIKWDLRKVDHYECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E D++I K GD RYLVR+ EM ES+KII+Q + + G + P+
Sbjct: 243 DEFDWEIQWQKEGDSLARYLVRISEMTESIKIIQQALEGIPGGPYENLEIRCFDRERDPE 302
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
D + S K + + +P E+YA +EAPKGE G++LI D P+R KIR P
Sbjct: 303 WNDFEYRFIS-----KKPSPTFELPRQELYARMEAPKGELGIFLIGDQSGFPWRWKIRPP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 358 GFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|298566757|gb|ADI86499.1| NADH-plastoquinone oxidoreductase subunit 7 [Brachypodium pinnatum]
Length = 393
Score = 385 bits (988), Expect = e-105, Method: Composition-based stats.
Identities = 165/393 (41%), Positives = 225/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKNLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPJLGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P +E +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIEKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N +F +R +G + E+A WG SG M+R SG WDLRK YE Y++
Sbjct: 186 VVEYQQLITQNPVFLERVERVGFISGEEAVNWGLSGPMLRASGIRWDLRKVDLYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + ++
Sbjct: 246 GWKVQWQKEGDSLARYLVRIGEMRESIKIIQQAVEKIPG----GPYENLEVRRFKKEKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y +EAPKGE G+YL+ D G P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRIEAPKGELGIYLVGDDGLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|290489834|gb|ADD31324.1| NADH-plastoquinone oxidoreductase subunit 7 protein [Plumbago
auriculata]
Length = 395
Score = 385 bits (988), Expect = e-105, Method: Composition-based stats.
Identities = 163/394 (41%), Positives = 225/394 (57%), Gaps = 5/394 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
++ +N GP HP+ HGVLRLIL LDGE V +P +G LHRG EK+ E ++ +Q +P
Sbjct: 6 RRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRSIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E E+L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +C+ F +
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVASDLPYGWIDKCLDFCEYFLTG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ L+T N IF +R +G + E+A WG SG ++R SG WDLRK YECY E
Sbjct: 186 FAEYQKLITRNPIFLERVEGVGIISEEEALNWGLSGPILRASGIEWDLRKIDHYECYEEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D++I K GD RYL+R+ EM ESVKII+Q + + G GP + + + R
Sbjct: 246 DWEIQWQKEGDSLARYLIRIGEMAESVKIIQQALEGIPG----GPYENLEIRRLSLNRVR 301
Query: 304 MKRSME-SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ K + + + E+Y VEAPKGE G+YLI D + P+R KIR PG+
Sbjct: 302 DLEWNDFEYRFISKKASPTFELSKQELYVRVEAPKGELGIYLIGDESSFPWRWKIRPPGF 361
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 362 INLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 395
>gi|290489836|gb|ADD31325.1| NADH-plastoquinone oxidoreductase subunit 7 protein [Quercus nigra]
Length = 393
Score = 385 bits (988), Expect = e-105, Method: Composition-based stats.
Identities = 162/394 (41%), Positives = 223/394 (56%), Gaps = 7/394 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRL++ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLVVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E E+L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNGPERLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F +
Sbjct: 126 GAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLTG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + ++ WG SG M+R SG WDLRK YECY E
Sbjct: 186 VTEYQKLITRNPIFLERVEGVGIIGRDEVINWGLSGPMLRASGIQWDLRKIDHYECYDEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVG-PVSASDPKIVPPKRA 302
D+++ K GD RYLVR+ EM ES+KII+Q + + G + D K P
Sbjct: 246 DWEVQWQKEGDSLARYLVRIGEMAESIKIIQQALEGIPGGPYENLEIRYFDRKRYPEWHD 305
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
R + K + + +P E+Y VEAPKGE G++LI D P+R KIR PG+
Sbjct: 306 FEYRFI------SKKPSPTFELPKQELYVRVEAPKGELGIFLIGDQSGFPWRWKIRPPGF 359
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 360 INLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|290489806|gb|ADD31310.1| NADH-plastoquinone oxidoreductase subunit 7 protein [Lonicera
japonica]
Length = 393
Score = 385 bits (988), Expect = e-105, Method: Composition-based stats.
Identities = 163/393 (41%), Positives = 227/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPVLGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E+L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM +FR GGV D+P ++ +CD F +
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNFFRIGGVAADLPHGWIDKCLDFCDYFLTE 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + +L+T N IF +R +G + ++A WG SG M+R SG WDLRK YECY E
Sbjct: 186 VAEYQNLITRNPIFLKRVEGVGIIGGKEAINWGLSGPMLRASGIQWDLRKVDQYECYDEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+++ GD RYLVR+ EM ES+K+I+Q + + G GP + + P R D
Sbjct: 246 DWEVQWQNEGDSLARYLVRINEMAESIKMIQQALEGIPG----GPYENLEIRRFDPLR-D 300
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
K + K + + + E+Y VEAPKGE G++LI D P+R KIR PG+
Sbjct: 301 PKWNDFDYRFISKKPSPTFELSKQELYVRVEAPKGELGIFLIGDKNVFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|289066877|ref|YP_003434395.1| NADH-plastoquinone oxidoreductase subunit 7 [Vigna radiata]
gi|259020064|gb|ACV90262.1| NADH-plastoquinone oxidoreductase subunit 7 [Vigna radiata]
Length = 393
Score = 385 bits (988), Expect = e-104, Method: Composition-based stats.
Identities = 160/396 (40%), Positives = 225/396 (56%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ K+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 ISTKRKDFMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E E+L I++P R IRV+ E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE + +E A+G RM +FR GGV D+P ++ +CD F
Sbjct: 123 ADIGAQTPFFYIFREREFIYDLFEAATGMRMMHNFFRIGGVATDLPYGWIDKCSDFCDYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+++ + L+T N IF +R +G V +++ WG SG M+R SG WDLRK YECY
Sbjct: 183 LTSIAEYQKLITRNPIFLERVEGVGVVDVKEVINWGLSGPMLRASGIQWDLRKVDNYECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E +++ K GD RYLVR+ EM ES+KII+Q + L G + P+
Sbjct: 243 EEFHWEVQWQKEGDSLARYLVRIGEMIESIKIIQQALEGLPGGPYENLEIRCFDREKEPE 302
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ + S K + + +P E+Y +EAPKGE G++LI D P+R KI P
Sbjct: 303 WNEFEYRFIS-----KKSSPSFELPKQELYVRIEAPKGELGIFLIGDQNGFPWRWKIHPP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 358 GFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|298566653|gb|ADI86447.1| NADH-plastoquinone oxidoreductase subunit 7 [Merxmuellera rangei]
Length = 393
Score = 384 bits (987), Expect = e-104, Method: Composition-based stats.
Identities = 163/393 (41%), Positives = 220/393 (55%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E +G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAVTGMRMMHNYFRIGGVAADLPYGWMDKCLDFCDYFLQG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYEQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRIREMRESIKIIQQAVEKIPG----GPYENLEARRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE GVYL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGVYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LA + ILGS+DI+ G DR
Sbjct: 361 NLQILPQLVKKMKLAXIMTILGSIDIIMGXXDR 393
>gi|89280692|ref|YP_514909.1| NADH dehydrogenase subunit 7 [Solanum lycopersicum]
gi|122201761|sp|Q2MI44|NDHH_SOLLC RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|84372040|gb|ABC56357.1| NADH-plastoquinone oxidoreductase subunit 7 [Solanum lycopersicum]
gi|89241728|emb|CAJ32451.1| NADH dehydrogenase subunit 7 [Solanum lycopersicum]
Length = 393
Score = 384 bits (987), Expect = e-104, Method: Composition-based stats.
Identities = 161/394 (40%), Positives = 223/394 (56%), Gaps = 5/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +
Sbjct: 5 TTRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRTIIQYL 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R DY+A M E E+L I++P R IRV+ E+ RI SHLL + D
Sbjct: 65 PYVTRWDYLATMFTEAITINGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F +
Sbjct: 125 IGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLT 184
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ + L+T N IF +R +G + ++A WG SG M+R SG WDLRK YE Y E
Sbjct: 185 GVAEYQKLITRNPIFLERVEGVGIIGRDEALNWGLSGPMLRASGIEWDLRKVDHYESYDE 244
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
D+ + + GD RYLVR+ EM ES+KII+Q + + G ++ P+
Sbjct: 245 FDWQVQWQREGDSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLEMRRFDRLKDPEWN 304
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
D + S K + + + E+Y VEAPKGE G++LI D P+R KIR PG+
Sbjct: 305 DFEYRFIS-----KKPSPTFELSKQELYVRVEAPKGELGIFLIGDQSVFPWRWKIRPPGF 359
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 360 INLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|290489822|gb|ADD31318.1| NADH-plastoquinone oxidoreductase subunit 7 protein [Euonymus
americanus]
Length = 393
Score = 384 bits (987), Expect = e-104, Method: Composition-based stats.
Identities = 167/392 (42%), Positives = 228/392 (58%), Gaps = 5/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +PY
Sbjct: 7 RQDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPY 66
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
R DY+A M E E+L I+IP R IRV+ E+ RI SHLL + D+G
Sbjct: 67 VTRWDYLATMFTEAITVNGPERLGNIQIPKRASHIRVIMLELSRIASHLLWLGPFMADIG 126
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A TP + F ERE + +E A+G RM +FR GGV D+P ++ +CD F +
Sbjct: 127 AQTPFFYIFRERELVYDLFEAATGMRMMHNFFRIGGVVADLPHGWIDKCLDFCDYFLTRA 186
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ +L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY+E D
Sbjct: 187 AEYQNLITRNPIFLERVEGVGIISAEEAINWGLSGPMLRASGIQWDLRKVDHYECYNEFD 246
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
++ P K GD RYLVR+ EM+ES+KII+Q + R+ G GP + + +R
Sbjct: 247 WEAPWQKEGDSLARYLVRISEMKESIKIIQQALERIPG----GPYENLETRCFDRERDQN 302
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
E K + + +P E+Y VEAPKGE G++LI D P+R KIR PG+ +
Sbjct: 303 WNDFE-YRFISKKTSPTFELPKQELYVRVEAPKGELGIFLIGDQSGFPWRWKIRPPGFIN 361
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 362 LQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|307721748|ref|YP_003892888.1| NADH dehydrogenase subunit D [Sulfurimonas autotrophica DSM 16294]
gi|306979841|gb|ADN09876.1| NADH dehydrogenase subunit D [Sulfurimonas autotrophica DSM 16294]
Length = 413
Score = 384 bits (987), Expect = e-104, Method: Composition-based stats.
Identities = 173/396 (43%), Positives = 239/396 (60%), Gaps = 2/396 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +NFGPQHP+AHG LRL+L L E + + P +G LHRG EK+ E + + +
Sbjct: 18 DRDDNELVLNFGPQHPSAHGQLRLMLHLQQEQIVKAHPDVGYLHRGMEKMAENMIYNEFM 77
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DR+DY+A + + +ALAVEKL+G+E+P R ++IR+L EI R++SHL + T A+D
Sbjct: 78 PTTDRMDYIASSSNNYGFALAVEKLIGLEVPRRAKVIRMLLLEINRLMSHLFWLATTALD 137
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA+T L+ F ERE LM E G+R+ A R GGV DI + + + + P
Sbjct: 138 IGAMTVFLFAFREREYLMDIIEGYCGARLTHAAIRIGGVPLDIQGSFLHQLRVFLNKLPQ 197
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ D DLL NRI+ R +GTV E A WG +G M+R SG AWD+RK +PYE Y E
Sbjct: 198 NIKDYEDLLDSNRIWLMRMEEVGTVSTEMALSWGCTGPMLRASGVAWDIRKEEPYELYDE 257
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVG--PVSASDPKIVPPK 300
++F++P GD + RY + M EMRES KI+ QC+ K G + A PK +
Sbjct: 258 VEFNVPFSDKGDNFARYRIYMEEMRESAKILYQCIEMYEKCEKDGQTELMAHAPKYISAP 317
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ D+ SL+ HF L T+G PVGEVY E+PKGE G Y+ S GG PYR K+RAP
Sbjct: 318 KLDIMTQNYSLMQHFVLVTQGMRPPVGEVYVPTESPKGELGFYINSQGGPYPYRLKLRAP 377
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ H + L GH + DV +I+G+ +IVFGEVDR
Sbjct: 378 SFWHTGILTDLLPGHYIPDVVSIIGTTNIVFGEVDR 413
>gi|225847873|ref|YP_002728036.1| NADH-quinone oxidoreductase subunits chi/delta
[Sulfurihydrogenibium azorense Az-Fu1]
gi|225644389|gb|ACN99439.1| NADH-quinone oxidoreductase subunit c/d (nadhdehydrogenase i
subunit c/d) (ndh-1 subunit c/d) [Sulfurihydrogenibium
azorense Az-Fu1]
Length = 581
Score = 384 bits (987), Expect = e-104, Method: Composition-based stats.
Identities = 165/392 (42%), Positives = 244/392 (62%), Gaps = 1/392 (0%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K +N+GP HP HG + + +L+GE ++ D +G LHRG EKL E T+ Q +PY
Sbjct: 191 KKNQIVLNWGPLHPGTHGTIWFLFDLEGETIKECDIILGQLHRGIEKLAEDLTYTQIIPY 250
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY++ + AY AVEKLL +E + + IR + +E+ RI SHLL + T A+D+G
Sbjct: 251 TDRMDYISALCSNIAYVNAVEKLLKVEPTEKAKWIRTMMAELQRINSHLLWLGTTALDLG 310
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
ALT L+ F EREK+M E +G R+++++ R GGV D+P ++ I + + FPS +
Sbjct: 311 ALTMFLYTFREREKIMDIIEGIAGIRLNSSFLRIGGVRYDLPEGALDVIKHFINDFPSRI 370
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
D DLLT NRI+ +RN ++G V ED + +G +G+M R +G +D+R QP + Y E+D
Sbjct: 371 KDYEDLLTKNRIWIKRNKDVGIVTKEDVYQYGLTGIMARSAGVPYDIRYIQPTDAYPEVD 430
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F+IP+G GD YDRYL+RM EM++S+KII QCV +L ++ +P V P +
Sbjct: 431 FEIPLGTVGDAYDRYLLRMEEMKQSIKIIHQCVQKLEKMKDDKYLATENP-YVLPTLQET 489
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
S+E+++ F L G P GE+Y + E P+GE G Y++S G +PYR +IR+ + +
Sbjct: 490 YYSIEAMVKDFNLRIYGEKAPEGEIYLSGENPRGELGFYIVSKGEGRPYRLRIRSGAFYN 549
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
LQ L KG +AD A+LGS+D V GE DR
Sbjct: 550 LQIFPQLIKGRTVADAVALLGSIDPVVGETDR 581
>gi|53804525|ref|YP_113818.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Methylococcus capsulatus str. Bath]
gi|81682184|sp|Q608X9|NUOCD_METCA RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|53758286|gb|AAU92577.1| NADH dehydrogenase I, C/D subunits [Methylococcus capsulatus str.
Bath]
Length = 587
Score = 384 bits (987), Expect = e-104, Method: Composition-based stats.
Identities = 160/393 (40%), Positives = 227/393 (57%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ + +N GP HP+ HGV R+ L+LDGE + P IG HRG EK+ E +++ +P
Sbjct: 199 EDTDFLFLNLGPNHPSVHGVFRVALQLDGEEIVDAVPDIGYHHRGAEKMGERQSWHSYIP 258
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ Y +AVEKL GIE+P R ++IRV+ SE RI SHLL T A DV
Sbjct: 259 YTDRIDYLGGSMNNLPYVMAVEKLAGIEVPERARVIRVMISEFYRIASHLLFYGTFAQDV 318
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G ++P + F +RE++ E +G+RMH+++FR GGV D+P I + FP
Sbjct: 319 GQMSPIFYMFIDRERVFEIIESFTGARMHSSFFRIGGVAMDLPEGWDRLIREFIAYFPRR 378
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L + + N++ ++R IG +A W +G +R +G WD RK++PY Y
Sbjct: 379 LAEYDKAVMANKLIQRRTRGIGAYTTTEAIDWSVTGAGLRATGLPWDYRKARPYSGYENF 438
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FD+P G +GDCYDR VR+ EMR+S++II QCV + GP A P PP +
Sbjct: 439 EFDVPTGTNGDCYDRCAVRVEEMRQSLRIIEQCVEHM----PSGPYKAEHPLTTPPPKER 494
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+E+LI HF + G +P GEV +EA KG G YL SDGG YR +IR P +
Sbjct: 495 TMHDIETLIQHFLSVSWGPVIPPGEVCVTIEATKGLNGYYLTSDGGTMSYRTRIRTPSFP 554
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ + + +G +AD+ AIL S+D V +VDR
Sbjct: 555 HLQMIPLMSRGMMVADLIAILASIDFVMADVDR 587
>gi|325126921|ref|YP_004286158.1| NADH-plastoquinone oxidoreductase subunit 7 [Fragaria vesca subsp.
vesca]
gi|324022833|gb|ADY15407.1| NADH-plastoquinone oxidoreductase subunit 7 [Fragaria vesca subsp.
vesca]
Length = 393
Score = 384 bits (987), Expect = e-104, Method: Composition-based stats.
Identities = 163/396 (41%), Positives = 224/396 (56%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 IPATRKDLMVVNMGPHHPSMHGVLRLIITLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E E+L I++P R IR++ E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRIIMLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 123 ADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPHGWIDKCLDFCDYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ + L+T N IF +R +G + E+ WG SG M+R SG WDLRK YECY
Sbjct: 183 LIRVAEYQQLITRNPIFLERVEGVGIIGREEVINWGLSGPMLRASGIQWDLRKVDQYECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E D+++ K GD RYLVR+ EM ES+KII+Q + + G GP + + +
Sbjct: 243 DEFDWEVQWQKEGDSLARYLVRIGEMTESIKIIQQALEGIPG----GPYENLEIRYFDRE 298
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R E K + + +P E+Y VEAPKGE G++LI D P+R KIR P
Sbjct: 299 RNPEWNDFE-YRFISKKPSPTFELPKQELYVRVEAPKGELGIFLIGDRSGFPWRWKIRPP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 358 GFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|149390316|ref|YP_001294147.1| NADH-plastoquinone oxidoreductase subunit 7 [Chloranthus spicatus]
gi|218527765|sp|A6MMH1|NDHH_CHLSC RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|146744236|gb|ABQ43308.1| NADH-plastoquinone oxidoreductase subunit 7 [Chloranthus spicatus]
Length = 395
Score = 384 bits (987), Expect = e-104, Method: Composition-based stats.
Identities = 167/393 (42%), Positives = 225/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 8 TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 67
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E+L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 68 YVTRWDYLATMFTEAITVNAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 127
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE L +E A+G RM YFR GGV D+P V+ +CD F +
Sbjct: 128 GAQTPFFYIFRERELLYDLFEAATGMRMMHNYFRIGGVAADLPHGWVDKCLDFCDYFLTG 187
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY E
Sbjct: 188 VAEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIRWDLRKVDHYECYDEF 247
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+++ K GD RYLVR+ EM ES+KII+Q + + G GP + + R
Sbjct: 248 DWEVQWQKEGDSLARYLVRISEMTESIKIIQQALEGIPG----GPYENLEVRRFDRARDA 303
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ K + + + E+YA VEAPKGE G++LI D P+R KIR PG+
Sbjct: 304 EWNDFD-YRFISKKPSPTFELSKQELYARVEAPKGELGIFLIGDNSVFPWRWKIRPPGFI 362
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 363 NLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 395
>gi|290489826|gb|ADD31320.1| NADH-plastoquinone oxidoreductase subunit 7 protein [Gunnera
manicata]
Length = 393
Score = 384 bits (987), Expect = e-104, Method: Composition-based stats.
Identities = 165/393 (41%), Positives = 225/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ IN GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIINMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E+L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F +
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPHGWIDKCLDFCDYFLTG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YE Y E
Sbjct: 186 VAEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYESYDEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+++ K GD RYLVR+ EM+ES+KII+Q + + G GP + + R
Sbjct: 246 DWEVQWQKEGDSLARYLVRIGEMKESIKIIQQALEGIPG----GPYENLEIRRFDRARDS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+++I D P+R KIR PG+
Sbjct: 302 EWNEFE-YRFISKKPSPTFELSKQELYVRVEAPKGELGIFMIGDQSVFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|296130548|ref|YP_003637798.1| NADH dehydrogenase I, D subunit [Cellulomonas flavigena DSM 20109]
gi|296022363|gb|ADG75599.1| NADH dehydrogenase I, D subunit [Cellulomonas flavigena DSM 20109]
Length = 448
Score = 384 bits (987), Expect = e-104, Method: Composition-based stats.
Identities = 175/408 (42%), Positives = 243/408 (59%), Gaps = 21/408 (5%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GPQHP+ HGVLRL+LE+DGE V IG LH G EK +E +T+ Q V +
Sbjct: 44 ERIVVNMGPQHPSTHGVLRLMLEIDGETVTEARAGIGYLHTGIEKNMEFRTWTQGVTFCT 103
Query: 67 RLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
R+DYVAP+ QE AY LAVEKLLGI ++P R +IRVL E+ RI SHL+ + T ++G
Sbjct: 104 RMDYVAPLFQEAAYCLAVEKLLGITDDVPERASVIRVLMMELNRISSHLVFLATGGNELG 163
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A T + GF RE+++ +E SG RM+ AY RPGGV QD+PP ++ +
Sbjct: 164 ATTIMILGFTAREEILKIFEMVSGLRMNHAYIRPGGVAQDVPPGAIDQVREAMTKVRGYF 223
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ DL+ N I + R +G + L A G +G ++R +G +D+RK+ PY Y D
Sbjct: 224 TQLEDLMLANPILQARMKEVGVLSLAAAMSLGVTGPLLRATGLPYDVRKTDPYCGYETYD 283
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK---- 300
FD+P + D + R +VR+ E +S++I+ QC+ RL GPV +D K+ P
Sbjct: 284 FDVPTQEASDSWARLIVRIEECYQSMRIVEQCLERL---ATPGPVMVADKKVAWPAQLAI 340
Query: 301 ------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG 348
+ M SME+LIHHFKL TEG+ VP G+V+ VE P+GE GV+L+SDG
Sbjct: 341 GTDGMGNSLDHIKEIMGTSMEALIHHFKLVTEGFRVPAGQVFQTVEHPRGELGVHLVSDG 400
Query: 349 GNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G KPYR R P + +LQA+ +C+G Q+ADV + S+D V G VDR
Sbjct: 401 GTKPYRAHFRDPSFNNLQAVSMMCEGGQVADVVVAVASIDPVLGGVDR 448
>gi|163781784|ref|ZP_02176784.1| NADH dehydrogenase I chain D [Hydrogenivirga sp. 128-5-R1-1]
gi|159883004|gb|EDP76508.1| NADH dehydrogenase I chain D [Hydrogenivirga sp. 128-5-R1-1]
Length = 586
Score = 384 bits (987), Expect = e-104, Method: Composition-based stats.
Identities = 172/393 (43%), Positives = 246/393 (62%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+K +N+GP HP HG + + +L+GE V + D +G LHRG EK+ E + Q +P
Sbjct: 194 QKKAQLVLNWGPLHPGTHGTIWFLFDLEGEFVVQSDVVLGQLHRGMEKIAENVYYFQFLP 253
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY++ + E +Y AVEKLL IE+P + + IR +++E+ RI SHLL + T A+D+
Sbjct: 254 YTDRMDYISAICNELSYVTAVEKLLNIEVPEKARYIRTMFAELQRINSHLLWLGTGALDL 313
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALT L+ F EREK+M E +G R+ A+ R GGVH D+ P ++ + + FP
Sbjct: 314 GALTVFLYCFREREKIMDLIEGNAGYRLTTAFLRIGGVHYDLAPGTLDAVRAFIKDFPQK 373
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L + LLT NRI+ +R ++G + ED + +G SG + R SG +DLRK +PY Y E+
Sbjct: 374 LKEYHMLLTRNRIWLRRTKDVGIITREDVYAYGLSGPVARASGVPYDLRKLEPYAAYDEV 433
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DFD+P+G+ GD YDRYLVRM EM +SV+II QCV++L K P D V P + D
Sbjct: 434 DFDVPVGEVGDVYDRYLVRMEEMAQSVRIIEQCVDKLEKLPKDAPYINKDHPAVIPPKED 493
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ S+E ++ F++ G PVGEVY++ E P+GE G Y+ S GG+KPYR +IR+
Sbjct: 494 VFMSLEDMVQSFRVVVHGESAPVGEVYSSAENPRGELGFYIYSRGGSKPYRLRIRSGALY 553
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L L +G +AD A+LGSLD V GE DR
Sbjct: 554 NLSVFPKLIEGRTIADAIALLGSLDPVVGETDR 586
>gi|28261775|ref|NP_783288.1| NADH dehydrogenase subunit 7 [Atropa belladonna]
gi|75303624|sp|Q8S8U4|NDHH_ATRBE RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|20068389|emb|CAC88102.1| NADH dehydrogenase 49kD subunit [Atropa belladonna]
Length = 393
Score = 384 bits (986), Expect = e-104, Method: Composition-based stats.
Identities = 161/394 (40%), Positives = 223/394 (56%), Gaps = 5/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +
Sbjct: 5 TTRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRTIIQYL 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R DY+A M E E+L I++P R IRV+ E+ RI SHLL + D
Sbjct: 65 PYVTRWDYLATMFTEAITINGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F +
Sbjct: 125 IGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLT 184
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ + L+T N IF +R +G + ++A WG SG M+R SG WDLRK YE Y E
Sbjct: 185 GIAEYQKLITRNPIFLERVEGVGIIGGDEALNWGLSGPMLRASGIEWDLRKVDHYESYDE 244
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
D+ + + GD RYLVR+ EM ES+KII+Q + + G ++ P+
Sbjct: 245 FDWQVQWQREGDSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLEIRRFDRLKDPEWN 304
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
D + S K + + + E+Y VEAPKGE G++LI D P+R KIR PG+
Sbjct: 305 DFEYRFIS-----KKPSPTFELSKQELYVRVEAPKGELGIFLIGDQSVFPWRWKIRPPGF 359
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 360 INLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|108773185|ref|YP_635695.1| NADH dehydrogenase subunit 7 [Solanum tuberosum]
gi|122209870|sp|Q2VEC5|NDHH_SOLTU RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|82754679|gb|ABB90093.1| NADH dehydrogenase subunit 7 [Solanum tuberosum]
gi|88656860|gb|ABD47113.1| NADH-plastoquinone oxidoreductase subunit 7 [Solanum tuberosum]
Length = 393
Score = 384 bits (986), Expect = e-104, Method: Composition-based stats.
Identities = 161/394 (40%), Positives = 223/394 (56%), Gaps = 5/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +
Sbjct: 5 TTRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRTIIQYL 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R DY+A M E E+L I++P R IRV+ E+ RI SHLL + D
Sbjct: 65 PYVTRWDYLATMFTEAITINGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F +
Sbjct: 125 IGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLT 184
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ + L+T N IF +R +G + ++A WG SG M+R SG WDLRK YE Y E
Sbjct: 185 GVAEYQKLITRNPIFLERVEGVGIIGRDEAVNWGLSGPMLRASGIEWDLRKVDHYESYDE 244
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
D+ + + GD RYLVR+ EM ES+KII+Q + + G ++ P+
Sbjct: 245 FDWQVQWQREGDSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLEMRRFDRLKDPEWN 304
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
D + S K + + + E+Y VEAPKGE G++LI D P+R KIR PG+
Sbjct: 305 DFEYRFIS-----KKPSPTFELSKQELYVRVEAPKGELGIFLIGDQSVFPWRWKIRPPGF 359
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 360 INLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|298566649|gb|ADI86445.1| NADH-plastoquinone oxidoreductase subunit 7 [Pennisetum
alopecuroides]
Length = 393
Score = 384 bits (986), Expect = e-104, Method: Composition-based stats.
Identities = 166/393 (42%), Positives = 221/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWMDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKIDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRIGEMRESIKIIQQAVEKIPG----GPYENLEARRFKNAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YLI D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLIGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K LAD+ ILGS+ GEVDR
Sbjct: 361 NLQILPQLVKKXXLADIMTILGSIXXXMGEVDR 393
>gi|323148877|ref|YP_004221969.1| NADH-plastoquinone oxidoreductase subunit 7 [Erodium carvifolium]
gi|316926341|gb|ADU58194.1| NADH-plastoquinone oxidoreductase subunit 7 [Erodium carvifolium]
Length = 393
Score = 384 bits (986), Expect = e-104, Method: Composition-based stats.
Identities = 168/396 (42%), Positives = 229/396 (57%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + +N GP HP+ HGVLRLIL LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 IPATRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E A EKL I++P R IR + E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEGITVNAPEKLGNIQVPKRASYIRTIMLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 123 ADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPHGWIDKCLDFCDYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ L++ L+T N IF +R IG + E+A WG SG M+R SG WDLRK YECY
Sbjct: 183 LTGLSEYEKLITRNPIFLERVEGIGIIGKEEAINWGLSGPMLRASGIQWDLRKIDNYECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+ELD+++ K GD R+LVR+ EMRES+KII+Q + + G + P+
Sbjct: 243 NELDWEVQWQKEGDSLARFLVRIGEMRESIKIIQQALEAIPGGPYENLEIRCFDRERYPE 302
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ S K + + +P E+Y VEAPKGE G++LI D + P+R KIR P
Sbjct: 303 WGGFEYRFVS-----KKPSPTFELPKQELYVRVEAPKGELGIFLIGDQSSFPWRWKIRPP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 358 GFMNLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|91208950|ref|YP_538984.1| NADH dehydrogenase subunit 7 [Gossypium hirsutum]
gi|122201413|sp|Q2L953|NDHH_GOSHI RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|85687464|gb|ABC73676.1| NADH-plastoquinone oxidoreductase subunit 7 [Gossypium hirsutum]
Length = 393
Score = 384 bits (986), Expect = e-104, Method: Composition-based stats.
Identities = 166/396 (41%), Positives = 226/396 (57%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 LSATEKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRTIIQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E E+L I++P R IRV+ E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 123 ADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPYGWLDKCLDFCDYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ + + L+T N IF +R IG + E+A WG SG M+R SG WDLRK YECY
Sbjct: 183 LTGIVEYQKLITRNPIFLERVEGIGVIGGEEAINWGLSGPMLRASGIKWDLRKVDHYECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E D++I K GD RYLVR+ EM ES+KII+Q + + G + P+
Sbjct: 243 DEFDWEIQWQKEGDSLARYLVRISEMTESIKIIQQALEGIPGGPYENLEIRCFDRERDPE 302
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
D + S K + + +P E+YA +EAPKGE G++LI D P+R KIR P
Sbjct: 303 WNDFEYRFIS-----KKPSPTFELPRQELYARMEAPKGELGIFLIGDQSGFPWRWKIRPP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 358 GFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|50346841|ref|YP_053212.1| NADH dehydrogenase subunit 7 [Nymphaea alba]
gi|121720670|ref|YP_001001590.1| NADH-plastoquinone oxidoreductase subunit 7 [Nuphar advena]
gi|75290267|sp|Q6EVZ4|NDHH_NYMAL RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|218527783|sp|A1XG11|NDHH_NUPAD RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|50250386|emb|CAF28652.1| NADH dehydrogenase 49KDa subunit [Nymphaea alba]
gi|84682261|gb|ABC60515.1| NADH-plastoquinone oxidoreductase subunit 7 [Nuphar advena]
Length = 393
Score = 384 bits (986), Expect = e-104, Method: Composition-based stats.
Identities = 165/396 (41%), Positives = 225/396 (56%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 VPDARKDLLVVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E A E+L I++P R IRV+ E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEAITVNAPEELGNIQVPKRASYIRVIMLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE L +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 123 ADIGAQTPFFYIFRERELLYDLFEAATGMRMMHNYFRIGGVAADLPHGWIDKCLDFCDYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ + + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY
Sbjct: 183 LTGVVEYQKLITRNPIFLERVEGVGFIGGEEAINWGLSGPMLRASGIQWDLRKVDRYECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E D+++ K GD RYLVR+ EM ES+KII+Q + + G GP + +
Sbjct: 243 DEFDWEVQWQKEGDSLARYLVRIGEMTESIKIIQQALEGIPG----GPYENLEFRRFAGT 298
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ E K + + + E+Y VEAPKGE G++LI D P+R KIR P
Sbjct: 299 KDSELNDFE-YRFISKKPSPSFELSKQELYVRVEAPKGELGIFLIGDNSVFPWRWKIRPP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 358 GFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|313183877|ref|YP_004021720.1| NADH-plastoquinone oxidoreductase subunit 7 [Prunus persica]
gi|309321489|gb|ADO65030.1| NADH-plastoquinone oxidoreductase subunit 7 [Prunus persica]
Length = 393
Score = 384 bits (986), Expect = e-104, Method: Composition-based stats.
Identities = 162/396 (40%), Positives = 225/396 (56%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 IPATRKDLMIVNMGPHHPSMHGVLRLIITLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E E+L I++P R IR++ E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRIIMLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE + +E A+G RM +FR GGV D+P ++ +CD F
Sbjct: 123 ADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNFFRIGGVAADLPHGWIDKCLDFCDYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ + + L+T N IF +R +G + E+ WG SG M+R SG WDLRK YECY
Sbjct: 183 LTRVAEYQKLITRNPIFLERVEGVGIIGREEVINWGLSGPMLRASGIQWDLRKVDHYECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E D+++ K GD RYLVR+ EM ES+KII+Q + + G GP + + +
Sbjct: 243 DEFDWEVQWQKEGDSLARYLVRIGEMIESIKIIQQALEGIPG----GPYENLEIRYFDRE 298
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R E K + + +P E+Y VEAPKGE G++LI D P+R KIR P
Sbjct: 299 RNPEWNDFE-YRFISKKPSPTFELPKQELYVRVEAPKGELGIFLIGDQSGFPWRWKIRPP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 358 GFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|254282227|ref|ZP_04957195.1| NADH dehydrogenase i, b/c/d subunit [gamma proteobacterium NOR51-B]
gi|219678430|gb|EED34779.1| NADH dehydrogenase i, b/c/d subunit [gamma proteobacterium NOR51-B]
Length = 592
Score = 383 bits (985), Expect = e-104, Method: Composition-based stats.
Identities = 156/392 (39%), Positives = 231/392 (58%), Gaps = 4/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
S +N GP HP+ HGV R+ L+LDGE++ P IG HRG EK+ E +++ +PY
Sbjct: 205 DSEFMFLNLGPNHPSVHGVFRIALQLDGEVIVDAVPDIGYHHRGAEKMGERQSWHTFIPY 264
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY+ + AY L+VEKL GIE+P R ++IR++ +E+ RI SHL+ T DVG
Sbjct: 265 TDRIDYLGGVMNNLAYVLSVEKLAGIEVPPRVKVIRIMLAELFRISSHLVFYGTFVQDVG 324
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
++P + F +RE+L E +G RMH A+FR GGV QD+P + + DS P+ L
Sbjct: 325 QMSPVFYMFADRERLFGIVEAITGGRMHPAWFRIGGVAQDLPKGWDTLVRDFIDSMPARL 384
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ + N I K R V IG E+A WG +G +R +G +DLR+ +PY Y + D
Sbjct: 385 DHYQKMAMDNSIVKDRTVGIGAYSGEEAVEWGITGASLRAAGVDFDLRRDRPYAGYEDFD 444
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F++P+G GD YDR +VR+ E+R+S++IIRQC++ + GP + PP +
Sbjct: 445 FEVPLGHRGDSYDRAVVRVEEIRQSLRIIRQCLDNM----PEGPYKSDHRHTTPPPKERT 500
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
+E+LIHHF + G +P GE +EA KG +L+SDGG YR +IR P +
Sbjct: 501 LGDIETLIHHFLNVSWGPAIPPGEACVPIEATKGFNSYHLVSDGGTSSYRTRIRTPSFPA 560
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
LQ + + +G + D+ AI+ S+D V +VDR
Sbjct: 561 LQQLPLISRGLLIPDLIAIIASIDFVMADVDR 592
>gi|11466021|ref|NP_054563.1| NADH dehydrogenase subunit 7 [Nicotiana tabacum]
gi|78102604|ref|YP_358743.1| NADH dehydrogenase subunit 7 [Nicotiana sylvestris]
gi|128838|sp|P12133|NDHH_TOBAC RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|122213585|sp|Q3C1P8|NDHH_NICSY RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|1223674|emb|CAA77398.1| NADH dehydrogenase 49kD subunit [Nicotiana tabacum]
gi|77799631|dbj|BAE46720.1| NADH dehydrogenase 49kD subunit [Nicotiana sylvestris]
gi|225262|prf||1211235CX ORF 393
Length = 393
Score = 383 bits (985), Expect = e-104, Method: Composition-based stats.
Identities = 161/394 (40%), Positives = 223/394 (56%), Gaps = 5/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +
Sbjct: 5 TTRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRTIIQYL 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R DY+A M E E+L I++P R IRV+ E+ RI SHLL + D
Sbjct: 65 PYVTRWDYLATMFTEAITINGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F +
Sbjct: 125 IGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLT 184
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ + L+T N IF +R +G + ++A WG SG M+R SG WDLRK YE Y E
Sbjct: 185 GVAEYQKLITRNPIFLERVEGVGIIGGDEALNWGLSGPMLRASGIEWDLRKVDHYESYDE 244
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
D+ + + GD RYLVR+ EM ES+KII+Q + + G ++ P+
Sbjct: 245 FDWQVQWQREGDSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLEIRRFDRLKDPEWN 304
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
D + S K + + + E+Y VEAPKGE G++LI D P+R KIR PG+
Sbjct: 305 DFEYRFIS-----KKPSPTFELSKQELYVRVEAPKGELGIFLIGDQSVFPWRWKIRPPGF 359
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 360 INLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|309322273|ref|YP_003934351.1| NADH-plastoquinone oxidoreductase subunit 7 [Monsonia speciosa]
gi|309322281|ref|YP_003934359.1| NADH-plastoquinone oxidoreductase subunit 7 [Monsonia speciosa]
gi|197131402|gb|ACH47219.1| NADH-plastoquinone oxidoreductase subunit 7 [Monsonia speciosa]
gi|300069366|gb|ADJ66486.1| NADH-plastoquinone oxidoreductase subunit 7 [Monsonia speciosa]
gi|300069374|gb|ADJ66494.1| NADH-plastoquinone oxidoreductase subunit 7 [Monsonia speciosa]
Length = 393
Score = 383 bits (985), Expect = e-104, Method: Composition-based stats.
Identities = 166/396 (41%), Positives = 225/396 (56%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + +N GP HP+ HGVLRLIL LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 IPATRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPVLGYLHRGMEKIAENRTIIQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E A EKL ++P R IR + E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEGITVNAPEKLGNTQVPKRASYIRTILLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 123 ADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPHGWIDKCLDFCDYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ L + L+T N IF +R IG + E+A WG SG M+R SG WDLRK YECY
Sbjct: 183 LTGLAEYEKLITRNPIFLERVEGIGIIGKEEAINWGLSGPMLRASGIQWDLRKIDNYECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+E D+++ K GD R+LVR+ EMRES+KII+Q + + G + P+
Sbjct: 243 NEFDWEVQWQKEGDSLARFLVRIGEMRESIKIIQQALEGIPGGPYENLEIRCFDRERYPE 302
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ S K + + +P E+Y VEAPKGE G++LI D P+R KIR P
Sbjct: 303 WGGFEYRFVS-----KKPSPTFELPKQELYVRVEAPKGELGIFLIGDQSAFPWRWKIRPP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 358 GFMNLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|110227134|ref|YP_665612.1| NADH dehydrogenase subunit 7 [Populus alba]
gi|134093262|ref|YP_001109563.1| NADH dehydrogenase subunit 7 [Populus trichocarpa]
gi|122243404|sp|Q14FA2|NDHH_POPAL RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|218527790|sp|A4GYX2|NDHH_POPTR RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|109945572|dbj|BAE97260.1| NADH dehydrogenase subunit 7 [Populus alba]
gi|133712124|gb|ABO36767.1| NADH-plastoquinone oxidoreductase 49 KD subunit [Populus
trichocarpa]
Length = 393
Score = 383 bits (985), Expect = e-104, Method: Composition-based stats.
Identities = 168/393 (42%), Positives = 224/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLIL LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDFMIVNMGPHHPSMHGVLRLILSLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E E+L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITINGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F +
Sbjct: 126 GGQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPHGWLDKCLDFCDYFLTG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R IG V E+A WG SG M+R SG WDLRK YECY E
Sbjct: 186 VAEYQKLITRNPIFLERVEGIGIVSAEEAINWGLSGPMLRASGVRWDLRKVDHYECYDEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EM ESVKII+Q + + G GP + + +R
Sbjct: 246 DWGVQWQKEGDSLARYLVRIGEMTESVKIIQQALEGIPG----GPYENLETRSFDRERNR 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + +P E+Y VEAPKGE G++LI D + P+R KIR PG+
Sbjct: 302 EWNDFE-YRFISKKTSPAFELPKQELYVRVEAPKGELGIFLIGDQSSFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLIKRMKLADIMTILGSIDIIMGEVDR 393
>gi|298566637|gb|ADI86439.1| NADH-plastoquinone oxidoreductase subunit 7 [Anomochloa
marantoidea]
Length = 393
Score = 383 bits (985), Expect = e-104, Method: Composition-based stats.
Identities = 163/393 (41%), Positives = 223/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ + GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVXXGPXHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQVPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N +F +R IG + E+A WG SG M+R SG WDLRK YE Y++
Sbjct: 186 IVEYQKLITHNPVFLERVEGIGFISGEEATNWGLSGPMLRASGIKWDLRKVDLYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+++ K GD RYLVR+ EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 DWEVQWQKEGDSLARYLVRIGEMRESIKIIQQAVEKIPG----GPYENLEVRRFNRAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDNSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|298566635|gb|ADI86438.1| NADH-plastoquinone oxidoreductase subunit 7 [Ecdeiocolea
monostachya]
Length = 393
Score = 383 bits (985), Expect = e-104, Method: Composition-based stats.
Identities = 163/394 (41%), Positives = 222/394 (56%), Gaps = 7/394 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRRDFMIVNMGPHHPSMHGVLRLIVTLDGEBVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I++P R IR + E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPELLENIQVPPRASYIRTIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G TP + F ERE + +E A+G RM YFR GGV D+P +E +CD F
Sbjct: 126 GVQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIEKCFDFCDYFLRR 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYECY++
Sbjct: 186 IVEYQKLITRNPIFLERVEGVGFISGEEAANWGLSGPMLRASGIEWDLRKVDPYECYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++++ K GD RYLVR+ EMRES+KII Q + G + +I K+A
Sbjct: 246 EWEVQWQKEGDSLARYLVRIGEMRESIKIIEQAAEGIPGGP------YENLEIRRFKKAK 299
Query: 304 MKRSME-SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ K + + + E+Y +EAPKGE G+YLI D P+R KIR PG+
Sbjct: 300 NYEWNDFEYRFLSKKPSPNFELSKQELYVRIEAPKGELGIYLIGDNSVFPWRWKIRPPGF 359
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 360 INLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|51892727|ref|YP_075418.1| NADH dehydrogenase I subunit D [Symbiobacterium thermophilum IAM
14863]
gi|81610529|sp|Q67P19|NUOD1_SYMTH RecName: Full=NADH-quinone oxidoreductase subunit D 1; AltName:
Full=NADH dehydrogenase I subunit D 1; AltName:
Full=NDH-1 subunit D 1
gi|51856416|dbj|BAD40574.1| NADH dehydrogenase I subunit D [Symbiobacterium thermophilum IAM
14863]
Length = 404
Score = 383 bits (985), Expect = e-104, Method: Composition-based stats.
Identities = 157/399 (39%), Positives = 242/399 (60%), Gaps = 6/399 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+++++ T++ GP HPA HGVLR+ LEL+GE V + +P G LH G EK E T+ Q
Sbjct: 9 LEEQRPERMTLSIGPHHPATHGVLRVKLELEGETVVKAEPETGFLHTGIEKTAEHLTWNQ 68
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTT 118
A DR+DY++P++ Y +AVEKLLGIE IP + ++ RV+ E+ R+ SHL+ + T
Sbjct: 69 ATTVMDRMDYLSPISNNTGYVMAVEKLLGIEDRIPEKARVTRVILLELNRVASHLVGLGT 128
Query: 119 QAMDVGA-LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWC 177
+D G TP W FE R++++ +E +G RM+ +Y R GG+ D+P E + +
Sbjct: 129 GGLDYGNIGTPIFWAFELRDRILDIFEHTTGQRMNPSYMRVGGLAYDLPHNFKEMVEDFL 188
Query: 178 DSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPY 237
P + ++ D++ N IF R + + E A +G +G +R +G+ +D+RK PY
Sbjct: 189 KVAPGRIQELKDVMLHNPIFVDRAKGVSVITYEQALRYGLTGRNLRVTGSDYDVRKYYPY 248
Query: 238 ECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIV 297
Y DF +P+ GD + R + EM ES+KIIRQ ++ L + D K+V
Sbjct: 249 LGYENYDFKVPVYTDGDSWSRVAITFDEMFESLKIIRQALDNLPWDD---RYIIDDRKLV 305
Query: 298 PPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKI 357
P + ++K SME+LIHHFKL G+ VP GEVY ++E+P+GE G Y++SDGGNKP R ++
Sbjct: 306 LPPKQEVKHSMEALIHHFKLVHHGFDVPAGEVYVSIESPRGEIGFYVVSDGGNKPMRVRV 365
Query: 358 RAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
R P + + ++ L +GH L+D+ + ++D VFGEVDR
Sbjct: 366 RPPSFYAVYSLPVLLEGHLLSDMVGAIATIDPVFGEVDR 404
>gi|11467869|ref|NP_050920.1| NADH dehydrogenase subunit 7 [Nephroselmis olivacea]
gi|31563231|sp|Q9TKV6|NDHH_NEPOL RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|5880798|gb|AAD54891.1|AF137379_114 49 kDa subunit of NADH-plastoquinone oxidoreductase [Nephroselmis
olivacea]
Length = 391
Score = 383 bits (985), Expect = e-104, Method: Composition-based stats.
Identities = 161/396 (40%), Positives = 227/396 (57%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + K+ ++ GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 1 MIEAKTDPMIVSMGPHHPSMHGVLRLIVTLDGENVLDCEPVVGYLHRGMEKIAENRTIVQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E A E+L IE+P R +RV+ E+ RI SHLL +
Sbjct: 61 YLPYVTRWDYLATMFTEAITVNAPERLANIEVPRRASYLRVIMLELSRIASHLLWLGPFM 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + ERE + +E A+G RM YFR GGV D+P ++ +C+ F
Sbjct: 121 ADLGAQTPFFYILREREMIYDLFEAATGMRMMHNYFRVGGVAADVPYGWIDKCLDFCEYF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+++ L+T N IF +R +GT+ + A WG SG M+R SG +WDLRK YECY
Sbjct: 181 LPKVDEYEALITRNPIFLKRVKGVGTISPQQAINWGLSGPMLRASGVSWDLRKVDRYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+ + + + GDC RYLVR+ EMR S KI++Q + + G GP + + +
Sbjct: 241 EDFHWSVESEETGDCLARYLVRIREMRTSTKIVQQALKSIPG----GPTENLEARQLSQG 296
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R + K + + +P E Y VEAPKGE GV+LI D P+R KIR P
Sbjct: 297 RTSPWNEFD-YQFLGKKASPTFKMPRQEHYVRVEAPKGELGVFLIGDDHVFPWRWKIRPP 355
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ ++Q + L +G +LAD+ ILGS+DI+ GEVDR
Sbjct: 356 GFINVQILPNLVQGMKLADIMTILGSIDIIMGEVDR 391
>gi|307153413|ref|YP_003888797.1| NADH dehydrogenase [Cyanothece sp. PCC 7822]
gi|306983641|gb|ADN15522.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 7822]
Length = 393
Score = 383 bits (984), Expect = e-104, Method: Composition-based stats.
Identities = 168/395 (42%), Positives = 230/395 (58%), Gaps = 6/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +N GP HP+ HGVLRLI+ LDGE V +P IG LHRG EK+ E +T + V
Sbjct: 4 ETRTEPMVLNMGPHHPSMHGVLRLIVTLDGEDVVDCEPVIGYLHRGMEKIAENRTNIMYV 63
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R DY A M E A EKL IE+P R Q IRV+ E+ RI +HLL + D
Sbjct: 64 PYVSRWDYAAGMFNEAITVNAPEKLANIEVPKRAQYIRVIMLELNRIANHLLWLGPFMAD 123
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRM-HAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E ASG RM + YFR GGV D+P V+ +CD F
Sbjct: 124 VGAQTPFFYIFREREMIYDLWEAASGYRMVNNNYFRIGGVAVDLPYGWVDKCEDFCDYFD 183
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R +GT+ ++A W SG M+R SG WDLRK YECY
Sbjct: 184 PKVDEYERLITDNPIFRRRVEGVGTITRDEAINWSLSGPMLRASGVKWDLRKVDHYECYD 243
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+++ GDC+ RYLVR+ EMRESVKIIRQ + L G GP + K + +
Sbjct: 244 DFDWEVHWETGGDCFARYLVRIREMRESVKIIRQALKGLPG----GPYENLEAKRLMEGK 299
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
E + K + +P GE Y +E+ KGE G+++I + P+R KIRA
Sbjct: 300 KSQWNDFE-YQYIAKKIAPTFKIPAGEHYVRLESGKGELGIFIIGNDDVFPWRWKIRAAD 358
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +LQ + + KG ++AD+ AILGS+DI+ G VDR
Sbjct: 359 FNNLQILPHILKGVKVADIVAILGSIDIIMGSVDR 393
>gi|290489838|gb|ADD31326.1| NADH-plastoquinone oxidoreductase subunit 7 protein [Staphylea
colchica]
Length = 393
Score = 383 bits (984), Expect = e-104, Method: Composition-based stats.
Identities = 164/390 (42%), Positives = 222/390 (56%), Gaps = 5/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +PY
Sbjct: 9 DLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAEHRTIIQYLPYVT 68
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R DY+A M E E+L I++P R IRV+ E+ RI SHLL + D+GA
Sbjct: 69 RWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQ 128
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F + + +
Sbjct: 129 TPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPHGWIDKCLDFCDYFLTGVRE 188
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY E D+
Sbjct: 189 YQKLITRNPIFLERVEGVGIIGTEEAINWGLSGPMLRASGIQWDLRKVDHYECYDEFDWQ 248
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ K GD RYLVR+ EM ES+KII+Q + + G + P+ D +
Sbjct: 249 VKWQKEGDSLARYLVRISEMTESIKIIQQALEGIPGGPYENLEVRCFDRERDPEWNDFEY 308
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
S K + + +P E+Y VEAPKGE G++LI D P+R KIR PG+ +LQ
Sbjct: 309 RFIS-----KKPSPTFELPKQELYVRVEAPKGELGIFLIGDQSGFPWRWKIRPPGFINLQ 363
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 364 ILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|156598485|gb|ABU85501.1| NADH-plastoquinone oxidoreductase subunit 7 [Passiflora biflora]
Length = 395
Score = 383 bits (984), Expect = e-104, Method: Composition-based stats.
Identities = 161/393 (40%), Positives = 225/393 (57%), Gaps = 3/393 (0%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K+ +N GP HP+ HGVLRLIL LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 KRKDFMVVNMGPHHPSMHGVLRLILTLDGEHVIDCEPVLGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E E + I++P R +RV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFAEAITVNGAEYIGNIQVPKRASYLRVIILELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +C+ F +A
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCNHFLTA 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R IG + ++A WG SG M+R S WDLRK YE Y E
Sbjct: 186 VTEYQKLITRNPIFLKRIEGIGIISADEAINWGLSGPMLRASRIRWDLRKIDHYETYDEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+++ K GD RYLVR+ EM ES+KII+Q + + G + ++ K++D
Sbjct: 246 DWEVQWQKEGDSLSRYLVRIGEMTESIKIIQQALEGIPGGDHEN---LESRRLNFFKKSD 302
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
K + K + + + E+Y VEAPKGE G++LI D P+R KIR PG+
Sbjct: 303 PKWNDFEYRFISKKVSPTFELTKQELYVRVEAPKGELGIFLIGDQTGFPWRWKIRPPGFI 362
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 363 NLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 395
>gi|167391854|ref|YP_001671738.1| NADH dehydrogenase subunit 7 [Carica papaya]
gi|218527820|sp|B1A990|NDHH_CARPA RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|166344181|gb|ABY86831.1| NADH-plastoquinone oxidoreductase subunit 7 [Carica papaya]
Length = 393
Score = 383 bits (984), Expect = e-104, Method: Composition-based stats.
Identities = 163/396 (41%), Positives = 223/396 (56%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 IPATGKDFMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E E+L I++P R IRV+ E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE + +E A+G RM YFR GG+ D+P ++ +CD F
Sbjct: 123 ADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGIAADLPHGWIDKCLDFCDYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ + + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY
Sbjct: 183 LTGVAEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIEWDLRKVDHYECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E D+++ K GD RYLVR+ EM ES+KII+Q + + G + P+
Sbjct: 243 DEFDWEVQWQKEGDSLARYLVRISEMTESIKIIQQALEGIPGGPYENLEIRCFDRKKDPE 302
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
D S K + + +P E+Y VEAPKGE G++LI D P+R KIR P
Sbjct: 303 WNDFDYRFIS-----KKPSPTFELPKQELYVRVEAPKGELGIFLIGDQSGFPWRWKIRPP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 358 GFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|13518398|ref|NP_084757.1| NADH dehydrogenase subunit 7 [Oenothera elata subsp. hookeri]
gi|169142915|ref|YP_001687338.1| NADH dehydrogenase subunit 7 [Oenothera glazioviana]
gi|169143000|ref|YP_001687422.1| NADH dehydrogenase subunit 7 [Oenothera biennis]
gi|14548163|sp|Q9MTH6|NDHH_OENEH RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|218527785|sp|B0Z515|NDHH_OENBI RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|218527786|sp|B0Z599|NDHH_OENGL RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|6723815|emb|CAB67226.1| NADH dehydrogenase subunit 7 [Oenothera elata subsp. hookeri]
gi|159793173|gb|ABW98927.1| NADH dehydrogenase subunit 7 [Oenothera biennis]
gi|159895527|gb|ABX10092.1| NADH dehydrogenase subunit 7 [Oenothera glazioviana]
Length = 393
Score = 383 bits (984), Expect = e-104, Method: Composition-based stats.
Identities = 167/396 (42%), Positives = 227/396 (57%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + +N GP HP+ HGVLRLIL LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 VTTTRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTVIQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E E+L I++P R IR++ E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEAITINGPEQLGNIQVPKRASYIRIIMLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 123 ADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+A+++ L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY
Sbjct: 183 LTAVSEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIEWDLRKVDRYECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
ELD++I K GD RYLVRM EM ES+KII+Q + + G + P+
Sbjct: 243 GELDWEIRWQKEGDSLARYLVRMSEMTESIKIIQQALEGIPGGPYENLEIRCFDREKDPE 302
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ S K + + +P E+Y VEAPKGE G++LI D P+R KIR P
Sbjct: 303 WDGFEYRFIS-----KKPSPTFELPKQELYVRVEAPKGELGIFLIGDQSGFPWRWKIRPP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 358 GFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|68164860|ref|YP_247656.1| NADH dehydrogenase subunit 7 [Cucumis sativus]
gi|75317301|sp|Q4VZL2|NDHH_CUCSA RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|67511455|emb|CAJ00815.1| NADH dehydrogenase subunit VII [Cucumis sativus]
gi|74027154|gb|AAZ94704.1| NADH dehydrogenase 49 kDa subunit [Cucumis sativus]
gi|115432856|gb|ABI97469.1| NADH-plastoquinone oxidoreductase subunit 7 [Cucumis sativus]
gi|115498358|gb|ABI98800.1| NADH-plastoquinone oxidoreductase subunit 7 [Cucumis sativus]
Length = 393
Score = 383 bits (984), Expect = e-104, Method: Composition-based stats.
Identities = 166/393 (42%), Positives = 224/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLIL LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E E+L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM +FR GGV D+P ++ +CD F +A
Sbjct: 126 GAQTPFFYIFRERELVYDLFEAATGMRMMHNFFRIGGVAADLPHGWIDKCLDFCDYFLTA 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+ WG SG M+R SG WDLRK YECY E
Sbjct: 186 VAEYQKLITQNPIFLERVEGVGIISGEEVINWGLSGPMLRASGIPWDLRKVDRYECYDEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+++ K GD RYLVR+ EM ESVKII+Q + + G S + P+ D
Sbjct: 246 DWEVQWQKEGDSLARYLVRLAEMTESVKIIQQALEGIPGGPYENLEIRSFDRARSPEWND 305
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
S K + + + E+Y VEAPKGE G++LI D G P+R KIR PG+
Sbjct: 306 FDYRFIS-----KKPSPTFELAKQELYVRVEAPKGELGIFLIGDQGGFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|298566683|gb|ADI86462.1| NADH-plastoquinone oxidoreductase subunit 7 [Arundo donax]
Length = 388
Score = 383 bits (984), Expect = e-104, Method: Composition-based stats.
Identities = 160/389 (41%), Positives = 219/389 (56%), Gaps = 5/389 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 5 LTSTRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ 64
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E A E L I+IP R IRV+ E+ RI SHLL +
Sbjct: 65 YLPYVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFM 124
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 125 ADLGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWMDKCLDFCDYF 184
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y
Sbjct: 185 LRGVVEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKIDPYESY 244
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
++ D+ + K GD RYLVR+ EMRES+KII+Q + ++ G GP + +
Sbjct: 245 NQFDWKVQWQKEGDSLARYLVRIGEMRESIKIIQQAIEKIPG----GPYENLEARRFKKA 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ E K + + + E+Y VEAPKGE G+YL+ D P+R KIR P
Sbjct: 301 KNSEWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDNLFPWRWKIRPP 359
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDI 389
G+ +LQ + L K +LAD+ ILGS+DI
Sbjct: 360 GFINLQILPQLVKKMKLADIMTILGSIDI 388
>gi|114804319|ref|YP_762316.1| NADH-plastoquinone oxidoreductase subunit 7 [Morus indica]
gi|122166755|sp|Q09WW2|NDHH_MORIN RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|78100371|gb|ABB21012.1| NADH-plastoquinone oxidoreductase subunit 7 [Morus indica]
Length = 393
Score = 383 bits (984), Expect = e-104, Method: Composition-based stats.
Identities = 161/396 (40%), Positives = 220/396 (55%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 IPAPRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E E L I++P R IR + E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEAITINGPELLGNIQVPKRASYIRAIMLELSRIASHLLWLGPFL 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE + +E A+G RM +FR GGV D+P ++ +CD F
Sbjct: 123 ADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNFFRIGGVAADLPHGWIDKCLDFCDYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ + L+T N IF +R +G + E+ WG SG M+R SG WDLRK YECY
Sbjct: 183 LIGVTEYQKLITRNPIFLERVEGVGVIGREEVINWGLSGPMLRASGIQWDLRKVDHYECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E D+++ K GD RYLVR+ EM ES+KII+Q + + G + P+
Sbjct: 243 DEFDWEVQWQKEGDSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLEIRYFDRERNPE 302
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
D S K + + +P E+Y VEAPKGE G++LI D P+R KIR P
Sbjct: 303 WNDFDYRFIS-----KKPSPTFELPKQELYVRVEAPKGELGIFLIGDQSGFPWRWKIRPP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 358 GFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|313184047|ref|YP_004021204.1| NADH-plastoquinone oxidoreductase subunit 7 [Castanea mollissima]
gi|309321574|gb|ADO65114.1| NADH-plastoquinone oxidoreductase subunit 7 [Castanea mollissima]
Length = 393
Score = 383 bits (983), Expect = e-104, Method: Composition-based stats.
Identities = 162/394 (41%), Positives = 223/394 (56%), Gaps = 7/394 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRL++ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLVVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E E+L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNGPERLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F +
Sbjct: 126 GAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKGLDFCDYFLTG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + ++ WG SG M+R SG WDLRK YECY E
Sbjct: 186 VTEYQKLITRNPIFLERVEGVGIIGRDEVINWGLSGPMLRASGIQWDLRKIDHYECYDEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVG-PVSASDPKIVPPKRA 302
D+++ K GD RYLVR+ EM ES+KII+Q + + G + D K P
Sbjct: 246 DWEVQWQKEGDSLARYLVRIGEMAESIKIIQQALEGIPGGPYENLEIRYFDRKRYPEWHD 305
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
R + K + + +P E+Y VEAPKGE G++LI D P+R KIR PG+
Sbjct: 306 FEYRFI------SKKPSPTFELPKQELYVRVEAPKGELGIFLIGDQSGFPWRWKIRPPGF 359
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 360 INLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|290489816|gb|ADD31315.1| NADH-plastoquinone oxidoreductase subunit 7 protein [Berberidopsis
corallina]
Length = 393
Score = 383 bits (983), Expect = e-104, Method: Composition-based stats.
Identities = 163/393 (41%), Positives = 225/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E+L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F +
Sbjct: 126 GAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPHGWIDKCLDFCDYFLTG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N +F +R +G + E+A WG SG M+R SG WDLRK YECY E
Sbjct: 186 VAEYQKLITRNPVFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYECYDEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+++ K GD RYLVR+ EM ES+KII+Q + + G ++ P+ D
Sbjct: 246 DWEVQWQKEGDSLARYLVRISEMTESIKIIQQALEGIPGGPYENLEIRRFDRVRDPEWND 305
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ S K + + + E+Y VEAPKGE G++LI D P+R KIR PG+
Sbjct: 306 FEYRFIS-----KKPSPTFELSKQELYVRVEAPKGELGIFLIGDQSVFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|148653494|ref|YP_001280587.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Psychrobacter sp. PRwf-1]
gi|218528057|sp|A5WG46|NUOCD_PSYWF RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|148572578|gb|ABQ94637.1| NADH dehydrogenase I, D subunit [Psychrobacter sp. PRwf-1]
Length = 595
Score = 383 bits (983), Expect = e-104, Method: Composition-based stats.
Identities = 154/393 (39%), Positives = 220/393 (55%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+AHG RL+L+LDGE V P IG HRG EK+ E +T+ +P
Sbjct: 207 RDEDFMFLNLGPNHPSAHGAFRLVLQLDGEEVIDCIPDIGYHHRGAEKMAERQTWHSYIP 266
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ + E Y +AVE+L GI +P R Q IRV+ SE RI ++LL T D
Sbjct: 267 YTDRIDYLGGVMNELPYVMAVEQLAGITVPERAQTIRVMMSEFFRITNNLLYFGTFIQDA 326
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP + F +R+K E +G RMH A+FR GG D+P + + D P
Sbjct: 327 GGMTPVFYMFTDRQKAYDVIEAVTGYRMHPAWFRIGGTAADLPRGWQRLVREFLDWMPQR 386
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L++ N + K R N+ + A WG +G +R +G +DLRK++PY Y
Sbjct: 387 LDEYVKAAMENSVLKGRTQNVAQYDAKQALAWGVTGAGLRATGVEFDLRKARPYMGYENY 446
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DF+IP+G +GD YDR +V++ E+R+S++IIRQC++ + GP A P VPP +
Sbjct: 447 DFEIPVGYNGDAYDRCMVKIEEIRQSLRIIRQCMDNM----PSGPYKADHPLAVPPPKNR 502
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+E+LI+HF + G +P GE VEA KG Y+ SD YR +IR P +A
Sbjct: 503 TLNDIETLINHFISVSWGPVMPAGEASMMVEATKGINSYYITSDRSTMSYRTRIRTPTFA 562
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ M + G ++D+ L S+DIV + DR
Sbjct: 563 HLQQMPSVINGSLVSDLIIYLASIDIVMADTDR 595
>gi|288818717|ref|YP_003433065.1| NADH dehydrogenase chain D [Hydrogenobacter thermophilus TK-6]
gi|288788117|dbj|BAI69864.1| NADH dehydrogenase chain D [Hydrogenobacter thermophilus TK-6]
gi|308752304|gb|ADO45787.1| NADH dehydrogenase I, D subunit [Hydrogenobacter thermophilus TK-6]
Length = 585
Score = 383 bits (983), Expect = e-104, Method: Composition-based stats.
Identities = 168/393 (42%), Positives = 248/393 (63%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+K +N+GP HP HG + + +LDGE V + D +G LHRG EK+ E + Q +P
Sbjct: 193 RKKAQLVLNWGPLHPGTHGTIWFLFDLDGEKVLQSDVILGQLHRGMEKIAENIYYFQFLP 252
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY++ + E +Y AVEKLLG+E+P + + IR +++E+ RI SHLL + T A+D+
Sbjct: 253 YTDRMDYISAICNELSYVTAVEKLLGVEVPEKARYIRTMFAELQRINSHLLWLGTGALDL 312
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALT L+ F EREK+M E +G R+ A+ R GGVH D+ ++ + + FP+
Sbjct: 313 GALTVFLYAFREREKIMDIIEGNAGFRLTTAFLRIGGVHYDLAEGTLDVVKAFIKDFPNR 372
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L + LLT NRI+ +R +IG + ED + +G +G + RGSG A+D+RK +PY Y E+
Sbjct: 373 LKEYHQLLTRNRIWLRRTKDIGVITKEDVFNYGLTGPVARGSGIAYDIRKLEPYAAYDEV 432
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DFDIP+G+ GD YDRYLVRM EM +S++II QCV +L K P D V P + D
Sbjct: 433 DFDIPVGEVGDVYDRYLVRMEEMVQSLRIIEQCVAKLEKMPKSAPYINKDHPAVMPPKED 492
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ ++E ++ F++ G + P GE+Y++ E P+GE G Y+ S GG++PYR +IR+
Sbjct: 493 VFMALEDMVKSFRIVVHGENAPPGELYSSGENPRGELGFYIYSKGGSRPYRLRIRSGALY 552
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L L +G +AD A+LGS+D V GE DR
Sbjct: 553 NLSIFPKLIEGGTIADAIALLGSIDPVVGETDR 585
>gi|298566667|gb|ADI86454.1| NADH-plastoquinone oxidoreductase subunit 7 [Stipagrostis zeyheri]
Length = 389
Score = 383 bits (983), Expect = e-104, Method: Composition-based stats.
Identities = 161/387 (41%), Positives = 220/387 (56%), Gaps = 5/387 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 8 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 67
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 68 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 127
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 128 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWMDKCLDFCDYFLRG 187
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 188 VVEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKIDPYESYNQF 247
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EMRES+KII+Q + ++ G GP + + +
Sbjct: 248 DWKVQWQKEGDSLARYLVRIGEMRESIKIIQQAIEKIPG----GPYENLEARRFNKGKNS 303
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 304 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 362
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIV 390
+LQ + L K +LAD+ ILGS+DI+
Sbjct: 363 NLQILPQLVKKMKLADIMTILGSIDII 389
>gi|282896977|ref|ZP_06304981.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Raphidiopsis brookii
D9]
gi|281198150|gb|EFA73042.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Raphidiopsis brookii
D9]
Length = 394
Score = 383 bits (983), Expect = e-104, Method: Composition-based stats.
Identities = 167/395 (42%), Positives = 227/395 (57%), Gaps = 6/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +N GP HP+ HGVLRLI+ LDGE V +P IG LHRG EK+ E ++ + V
Sbjct: 5 ETRTEPMVLNMGPHHPSMHGVLRLIVTLDGEDVVDCEPVIGYLHRGMEKIAENRSTIMYV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R DY A M E A EKL GI +P R IRV+ E+ RI +HLL D
Sbjct: 65 PYVSRWDYAAGMFNEAVTVNAPEKLAGITVPKRASYIRVIMLELNRIANHLLWFGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRM-HAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E A+G RM + YFR GGV D+P V+ +CD F
Sbjct: 125 VGAQTPFFYQFREREMIYDLWEAATGYRMVNNNYFRVGGVAVDLPYGWVDKCEEFCDYFL 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R IGT+ E+A W SG M+RGSG WDLRK YECY
Sbjct: 185 PKVDEYERLVTNNPIFRRRIEGIGTITREEAINWSLSGPMLRGSGVKWDLRKVDHYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+D+ GDC RY+VRM EMRESVKII+Q + L G GP + K +
Sbjct: 245 DFDWDVQWETAGDCLARYMVRMREMRESVKIIKQALKGLPG----GPYENLEAKRMMAGP 300
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ + K + +P GE+Y+ VE+ KGE G+YL+ D P+R KIR
Sbjct: 301 KSEWDGFD-YQYVAKKVAPTFKIPSGEIYSRVESGKGELGIYLVGDNNVFPWRWKIRPAD 359
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +LQ + L +G ++AD+ ILGS+D++ G VDR
Sbjct: 360 FNNLQILPGLLRGVKVADIVVILGSIDVIMGSVDR 394
>gi|320353964|ref|YP_004195303.1| NADH dehydrogenase subunit D [Desulfobulbus propionicus DSM 2032]
gi|320122466|gb|ADW18012.1| NADH dehydrogenase subunit D [Desulfobulbus propionicus DSM 2032]
Length = 408
Score = 383 bits (983), Expect = e-104, Method: Composition-based stats.
Identities = 172/397 (43%), Positives = 242/397 (60%), Gaps = 12/397 (3%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+++ GPQHPA HGVLR+ LELDGE + P +G LHRG EKL E KT+ QA+
Sbjct: 18 GERYSLRMGPQHPATHGVLRVDLELDGETIIECIPQVGYLHRGFEKLAENKTYAQALILT 77
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DRLDY+A M Y +AVE+LLGI +P+R Q IR + E+ R+ SHLL + T A+D+GA
Sbjct: 78 DRLDYIAAMANNVGYCVAVERLLGISVPLRAQYIRTIVGEMSRLCSHLLWLATHALDIGA 137
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+T L+ F ERE L+ +E G+R+ +Y R GGV QD+ V+++ + D FPS +
Sbjct: 138 MTVFLYCFREREILLDLFEELCGARLTFSYPRIGGVRQDVTSYFVDELQRFLDMFPSKIE 197
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ L+ NRI+ +R V +GT+ E+A G +G +RGSG +D+RK QPY+ Y +DF
Sbjct: 198 EYETLIDTNRIWLKRTVGVGTLTGEEALALGLTGACLRGSGVDYDIRKHQPYDAYPLVDF 257
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGP------VSASDPKIVPP 299
++P+G GD Y RY RM EM +SV+II+QC+++L +GP + P +
Sbjct: 258 EVPLGSDGDIYARYRCRMEEMHQSVRIIQQCIDQLPPGPIIGPDAPDLVMPNKVPARIEA 317
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
+ + LI LY G+VY A E PKGE G Y ISDG N+PYR IR+
Sbjct: 318 GTNEYGTGLIKLIRDRNLYI------SGDVYVATEVPKGELGFYFISDGNNRPYRMHIRS 371
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
P + H+ A+ + KG +AD+ A +GSLD+V GE DR
Sbjct: 372 PSFIHIGALAAIAKGELIADLIANIGSLDVVLGESDR 408
>gi|139390405|ref|YP_001123002.1| NADH dehydrogenase 49KDa protein [Aethionema cordifolium]
gi|218527811|sp|A4QJH2|NDHH_AETCO RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|134286198|dbj|BAF49827.1| NADH dehydrogenase 49KDa protein [Aethionema cordifolium]
Length = 401
Score = 383 bits (983), Expect = e-104, Method: Composition-based stats.
Identities = 161/396 (40%), Positives = 224/396 (56%), Gaps = 3/396 (0%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDG V +P +G LHRG EK+ E + +Q +P
Sbjct: 6 TRKDLMIVNIGPHHPSMHGVLRLIVTLDGGDVVDCEPILGYLHRGMEKIAENRAIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E E+L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM +FR GG+ D+P ++ +CD F +
Sbjct: 126 GAQTPFFYIFREREFVYDLFEAATGMRMMHNFFRIGGIAADLPYGWIDKCLDFCDYFLTE 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY E
Sbjct: 186 VVEYQKLITRNPIFLERVEGVGILGGEEAINWGLSGPMLRASGIQWDLRKVDRYECYDEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVG-PVSASDPKIVPPKRA 302
+++I K GD RYLVR+ EM ES+KII+Q + L G D K+ +
Sbjct: 246 EWEIQWQKQGDSLARYLVRLSEMTESIKIIQQALEGLPGGPYENLERRGFDRKMNSEMNS 305
Query: 303 DMKRSMESLIHHF--KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+M + + F K + + + E+Y VEAPKGE G++LI D P+R KIR P
Sbjct: 306 EMNSEWNNFDYRFISKKPSPTFELSKQELYVRVEAPKGELGIFLIGDQSGFPWRWKIRPP 365
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 366 GFINLQILPELVKRMKLADIMTILGSIDIIMGEVDR 401
>gi|313199749|ref|YP_004021363.1| NADH-plastoquinone oxidoreductase subunit 7 [Theobroma cacao]
gi|309321313|gb|ADO64856.1| NADH-plastoquinone oxidoreductase subunit 7 [Theobroma cacao]
gi|328924834|gb|ADO64945.2| NADH-plastoquinone oxidoreductase subunit 7 [Theobroma cacao]
Length = 393
Score = 382 bits (982), Expect = e-104, Method: Composition-based stats.
Identities = 166/396 (41%), Positives = 226/396 (57%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 IPATEKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRTIIQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E E+L I++P R IRV+ E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 123 ADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ + + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY
Sbjct: 183 LTGIVEYQKLITRNPIFLERVEGVGVIGGEEAINWGLSGPMLRASGIKWDLRKVDHYECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E D++I K GD RYLVRM EM ES+KII+Q + + G + P+
Sbjct: 243 DEFDWEIQWQKEGDSLARYLVRMSEMTESIKIIQQALEGIPGGPYENLEIRCFDRERDPE 302
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
D + S K + + +P E+YA +EAPKGE G++LI D P+R KIR P
Sbjct: 303 WNDFEYRFIS-----KKPSPTFELPRQELYARMEAPKGELGIFLIGDQSGFPWRWKIRPP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 358 GFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|60117227|ref|YP_209561.1| NADH dehydrogenase subunit 7 [Huperzia lucidula]
gi|75286706|sp|Q5SCZ3|NDHH_HUPLU RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|50660035|gb|AAT80757.1| NADH-plastoquinone oxidoreductase subunit 7 [Huperzia lucidula]
Length = 393
Score = 382 bits (982), Expect = e-104, Method: Composition-based stats.
Identities = 164/396 (41%), Positives = 223/396 (56%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + ++ GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 MLATEKNPMIVSMGPHHPSMHGVLRLIVTLDGENVTNCEPILGYLHRGMEKIAENRTIIQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E A EKL I++P R IRV+ E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEAITVNAPEKLANIQVPKRASYIRVIMPELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE + +E A+G RM YFR GGV D P V+ +C+
Sbjct: 123 ADIGAQTPFFYIFRERETIYDLFEAATGMRMMHNYFRIGGVAVDSPYGWVDKCSDFCNYS 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+N+ L+T N IF +R +GT+ E+A WG SG M+R SG WDLRK YECY
Sbjct: 183 LPKVNEYERLITRNPIFLKRVEGVGTIGGEEAINWGLSGPMLRASGVQWDLRKVDHYECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E D+ I + GD RY VR+ E +ESVKI++Q + + G GP + + +
Sbjct: 243 DESDWQIQRQEEGDSLARYSVRIGETKESVKIVQQALKVIPG----GPYENLEARRLNRG 298
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ E K + + +P E Y VEAPKGE G++L+ D P+R KIR P
Sbjct: 299 KNSEWNDFEYQFISRKP-SPTFKLPKQEHYVRVEAPKGELGIFLMGDDSAFPWRWKIRPP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L +G +LAD+ ILGS+DI GEVDR
Sbjct: 358 GFINLQILPQLVEGVKLADIMTILGSIDITMGEVDR 393
>gi|139387500|ref|YP_001122853.1| NADH-plastoquinone oxidoreductase subunit 7 [Phaseolus vulgaris]
gi|218527789|sp|A4GGF2|NDHH_PHAVU RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|112031022|gb|ABH88134.1| NADH-plastoquinone oxidoreductase subunit 7 [Phaseolus vulgaris]
gi|158187179|gb|ABW22812.1| NADH-plastoquinone oxidoreductase subunit 7 [Phaseolus vulgaris]
Length = 393
Score = 382 bits (982), Expect = e-104, Method: Composition-based stats.
Identities = 159/396 (40%), Positives = 224/396 (56%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 ISTIRKDFMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E E+L I++P R IRV+ E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE + +E A+G RM +FR GGV D+P V+ +CD F
Sbjct: 123 ADIGAQTPFFYIFREREFIYDLFEAATGMRMMHNFFRIGGVATDLPYGWVDKCSDFCDYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+++ + L+T N IF +R +G V +++ WG SG M+R SG WDLRK YECY
Sbjct: 183 LTSIAEYQKLITRNPIFLERVEGVGVVDVKEVINWGLSGPMLRASGIQWDLRKVDNYECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E +++ K GD RYLVR+ EM ES+KII+Q + L G + P+
Sbjct: 243 EEFHWEVQWQKEGDSLARYLVRIGEMVESIKIIQQALEGLPGGPYENLEIRCFDREKEPE 302
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ + S K + + +P E+Y +EAPKGE G+++I D P+R KI P
Sbjct: 303 WNEFEYRFIS-----KKSSPSFELPKQELYVRIEAPKGELGIFIIGDQNGFPWRWKIHPP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 358 GFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|67921487|ref|ZP_00515005.1| NADH dehydrogenase (quinone) [Crocosphaera watsonii WH 8501]
gi|67856599|gb|EAM51840.1| NADH dehydrogenase (quinone) [Crocosphaera watsonii WH 8501]
Length = 394
Score = 382 bits (982), Expect = e-104, Method: Composition-based stats.
Identities = 165/395 (41%), Positives = 233/395 (58%), Gaps = 6/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +N GP HP+ HGVLRLI+ LDGE V +P IG LHRG EK+ E +T + V
Sbjct: 5 ETRTEPMVLNMGPHHPSMHGVLRLIVTLDGEDVVDCEPVIGYLHRGMEKIAENRTNVMYV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R DY A M E A E+L +++P R Q IRV+ E+ RI +HLL + D
Sbjct: 65 PYVSRWDYAAGMFNEAITVNAPEQLADVKVPKRAQYIRVIMLELNRIANHLLWLGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSR-MHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E ASG R ++ YFR GGV D+P ++ +CD F
Sbjct: 125 VGAQTPFFYIFREREMIYDLWEAASGMRLINNNYFRIGGVAVDLPYGWIDKCEDFCDHFD 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R IGT+ E+A WG SG M+RGSG WDLRK YECY
Sbjct: 185 PKVDEYEKLITNNPIFRRRVEGIGTITREEAINWGLSGPMLRGSGVQWDLRKVDHYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+++ GDC+ RYL+R+ EMRESVKI+RQ + + G GP + K + +
Sbjct: 245 DFDWEVQWETAGDCFARYLIRIREMRESVKIVRQALKAIPG----GPYENLEAKRMMEGK 300
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
S + H K + +P GE Y +E+ KGE G++++ P+R KIRAP
Sbjct: 301 KSEWNSFD-YQHIAKKVAPTFKIPEGEHYVRMESGKGELGIFIVGSNDPFPWRWKIRAPD 359
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +LQ + L KG ++AD+ AILGS+D++ G VDR
Sbjct: 360 FNNLQILPHLLKGVKVADIMAILGSIDVIMGSVDR 394
>gi|169142765|ref|YP_001687192.1| NADH dehydrogenase subunit 7 [Oenothera argillicola]
gi|169143086|ref|YP_001687506.1| NADH dehydrogenase subunit 7 [Oenothera parviflora]
gi|218527784|sp|B0Z4T1|NDHH_OENAR RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|218527787|sp|B0Z5I3|NDHH_OENPA RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|159793003|gb|ABW98759.1| NADH dehydrogenase subunit 7 [Oenothera argillicola]
gi|159895612|gb|ABX10176.1| NADH dehydrogenase subunit 7 [Oenothera parviflora]
Length = 393
Score = 382 bits (982), Expect = e-104, Method: Composition-based stats.
Identities = 168/396 (42%), Positives = 229/396 (57%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + +N GP HP+ HGVLRLIL LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 VTTTRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTVIQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E E+L I++P R IR++ E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEAITINGPEQLGNIQVPKRASYIRIIMLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 123 ADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+A+++ L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY
Sbjct: 183 LTAVSEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIEWDLRKVDRYECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
ELD++I K GD RYLVRM EM ES+KII+Q + + G GP + + +
Sbjct: 243 GELDWEIRWQKEGDSLARYLVRMSEMTESIKIIQQALEGIPG----GPYENLEIRCFDIE 298
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ E K + + +P E+Y VEAPKGE G++LI D P+R KIR P
Sbjct: 299 KDPEWDGFE-YRFISKKPSPTFELPKQELYVRVEAPKGELGIFLIGDQSGFPWRWKIRPP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 358 GFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|183217789|ref|YP_001837409.1| NADH dehydrogenase subunit 7 [Guizotia abyssinica]
gi|218527774|sp|B2LMP2|NDHH_GUIAB RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|179366304|gb|ACB86575.1| NADH-plastoquinone oxidoreductase subunit 7 [Guizotia abyssinica]
Length = 393
Score = 382 bits (982), Expect = e-104, Method: Composition-based stats.
Identities = 164/393 (41%), Positives = 227/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E+L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM +FR GGV D+P ++ +CD F +
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNFFRIGGVAADLPHGWIDKCLDFCDYFLTG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY E
Sbjct: 186 IAEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYECYDEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+++ K GD RYLVR+ EM ES+KII+Q + + G GP + + +
Sbjct: 246 DWEVQWQKEGDSLARYLVRISEMTESIKIIQQALEGIPG----GPYENLEIRRFDRVKDT 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ + K + + + E+YA VEAPKGE G++LI D G P+R KIR PG+
Sbjct: 302 VWNEFD-YRFISKKPSPTFELSKQELYARVEAPKGELGIFLIGDKGVFPWRYKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|281190756|ref|YP_003330995.1| NADH dehydrogenase subunit 7 [Parthenium argentatum]
gi|269924869|gb|ACZ52742.1| NADH dehydrogenase subunit 7 [Parthenium argentatum]
Length = 393
Score = 382 bits (982), Expect = e-104, Method: Composition-based stats.
Identities = 165/393 (41%), Positives = 227/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E+L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM +FR GGV D+P ++ +CD F +
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNFFRIGGVAADLPHGWIDKCLDFCDYFLTG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY E
Sbjct: 186 IAEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIKWDLRKVDQYECYDEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D++I K GD RYLVR+ EM ES+KII+Q + + G GP + + +
Sbjct: 246 DWEIQWQKEGDSLARYLVRISEMTESIKIIQQALEGIPG----GPYENLEIRRFDRVKDT 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ + K + + + E+YA VEAPKGE G++LI D G P+R KIR PG+
Sbjct: 302 VWNEFD-YRFISKKPSPTFELSKQELYARVEAPKGELGIFLIGDKGVFPWRYKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|229821706|ref|YP_002883232.1| NADH dehydrogenase I, D subunit [Beutenbergia cavernae DSM 12333]
gi|229567619|gb|ACQ81470.1| NADH dehydrogenase I, D subunit [Beutenbergia cavernae DSM 12333]
Length = 445
Score = 382 bits (982), Expect = e-104, Method: Composition-based stats.
Identities = 185/408 (45%), Positives = 250/408 (61%), Gaps = 18/408 (4%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GPQHP+ HGVLRL+LE+DGE V IG LH G EK +E +T+ Q V +
Sbjct: 38 ERIVVNMGPQHPSTHGVLRLVLEIDGESVVEARAGIGYLHTGIEKNMEFRTWTQGVTFCT 97
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+DYVAP+ QE AY L VEKLLG+E+P R LIRVL E+ RI SHL+ + T ++GA
Sbjct: 98 RMDYVAPLFQEAAYCLGVEKLLGVEVPERATLIRVLLMELNRISSHLVAIATGGNELGAT 157
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
T GF ERE+++ +E +G RM+ AY RPGGV QDIPP + + L++
Sbjct: 158 TIMTIGFREREEILRIFELITGLRMNHAYIRPGGVAQDIPPGTTDTVRDALPRIERGLDE 217
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
++ L+ N IFK R V +G + L A G +G ++R +G +DLRK+QPY Y DFD
Sbjct: 218 LAKLMLANPIFKARQVGVGYLSLSAAMALGVTGPVLRSAGLPFDLRKAQPYCGYETYDFD 277
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVG--PVSASDPKIVPPK---- 300
+P D Y R ++R+ E RES+KI+RQ + RL +++ G PV +D KI P
Sbjct: 278 VPTSTDSDAYSRIVLRLDEARESIKIVRQVLERLDAQDRTGSHPVMVADKKIAWPAQLAL 337
Query: 301 ------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG 348
R M SME+LIHHFKL TEG+ VP G+V++ VE P+G GV+L+SDG
Sbjct: 338 GPDGQGNSAEHIRTIMGTSMEALIHHFKLVTEGFRVPAGQVFSQVEHPRGVIGVHLVSDG 397
Query: 349 GNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G +PYR R P + +LQA+ +C+G Q+ADV + SLD V G VDR
Sbjct: 398 GTRPYRAHFRDPSFNNLQALAAMCEGGQVADVVVAVASLDPVLGGVDR 445
>gi|290489800|gb|ADD31307.1| NADH-plastoquinone oxidoreductase subunit 7 protein [Dillenia
indica]
Length = 393
Score = 382 bits (982), Expect = e-104, Method: Composition-based stats.
Identities = 163/396 (41%), Positives = 226/396 (57%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ K +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 VSATKKDFMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E A E+L I++P R IRV+ E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEAITVNAPERLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFL 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE + +E A+G RM +FR GGV D+P ++ +CD F
Sbjct: 123 ADIGAQTPFFYIFREREFVYDLFEAATGMRMMHNFFRIGGVAADLPHGWIDKCLDFCDYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ +++ L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY
Sbjct: 183 LTGVSEYQKLITRNPIFLERVEGVGIINEEEAKNWGLSGPMLRASGIQWDLRKVDHYECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E D++ K GD RYLVR+ EM ES+KII+Q + + G +++ +
Sbjct: 243 DEFDWEAKWQKEGDSLARYLVRISEMMESIKIIQQALEGIPGGPYENLEIRRFDRVINSE 302
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
D + S K + + + E+Y VEAPKGE G++LI D P+R KIR P
Sbjct: 303 WNDFEYRFIS-----KKPSPTFELSKQELYVRVEAPKGELGIFLIGDQSVFPWRWKIRPP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 358 GFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|91209045|ref|YP_538906.1| NADH dehydrogenase subunit 7 [Solanum bulbocastanum]
gi|122201799|sp|Q2MID1|NDHH_SOLBU RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|84371952|gb|ABC56270.1| NADH-plastoquinone oxidoreductase subunit 7 [Solanum bulbocastanum]
Length = 393
Score = 382 bits (982), Expect = e-104, Method: Composition-based stats.
Identities = 159/394 (40%), Positives = 223/394 (56%), Gaps = 5/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +
Sbjct: 5 TTRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRTIIQYL 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R DY+A M E E+L I++P R IRV+ E+ RI SHLL + D
Sbjct: 65 PYVTRWDYLATMFTEAITINGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA TP + F ERE + +E A+G RM +FR GGV D+P ++ +CD F +
Sbjct: 125 IGAQTPFFYIFRERELIYDLFEAATGMRMMHNFFRIGGVAADLPYGWIDKCLDFCDYFLT 184
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ + L+T N IF +R +G + ++A WG SG M+R SG WDLRK YE Y E
Sbjct: 185 GVAEYQKLITRNPIFLERVEGVGIIGRDEALNWGLSGPMLRASGIEWDLRKVDHYESYDE 244
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
D+ + + GD RYLVR+ EM ES+KII+Q + + G ++ P+
Sbjct: 245 FDWQVQWQREGDSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLEMRRFDRLKDPEWN 304
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
D + S K + + + E+Y VEAPKGE G+++I D P+R KIR PG+
Sbjct: 305 DFEYRFIS-----KKPSPTFELSKQELYVRVEAPKGELGIFMIGDQSVFPWRWKIRPPGF 359
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 360 INLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|94502540|ref|YP_588167.1| NADH dehydrogenase subunit 7 [Helianthus annuus]
gi|122179551|sp|Q1KXQ9|NDHH_HELAN RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|88656944|gb|ABD47195.1| NADH-plastoquinone oxidoreductase subunit 7 [Helianthus annuus]
Length = 393
Score = 382 bits (982), Expect = e-104, Method: Composition-based stats.
Identities = 164/393 (41%), Positives = 227/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E+L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM +FR GGV D+P ++ +CD F +
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNFFRIGGVAADLPHGWIDKCLDFCDYFLTG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY E
Sbjct: 186 IAEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIEWDLRKVDHYECYDEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+++ K GD RYLVR+ EM ES+KII+Q + + G GP + + +
Sbjct: 246 DWEVQWQKEGDSLARYLVRISEMTESIKIIQQALEGIPG----GPYENLEIRRFDRVKDT 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ + K + + + E+YA VEAPKGE G++LI D G P+R KIR PG+
Sbjct: 302 VWNEFD-YRFISKKPSPTFELSKQELYARVEAPKGELGIFLIGDKGVFPWRYKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|290489828|gb|ADD31321.1| NADH-plastoquinone oxidoreductase subunit 7 protein [Heuchera
sanguinea]
Length = 393
Score = 382 bits (982), Expect = e-104, Method: Composition-based stats.
Identities = 165/393 (41%), Positives = 227/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIITLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E+L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F+ERE + +E A+G RM YFR GGV D+P ++ +CD F +
Sbjct: 126 GAQTPFFYIFKERELVYDLFEAATGMRMMHNYFRIGGVAVDLPHGWIDKCLDFCDYFLTG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY E
Sbjct: 186 IAEYQKLITRNPIFLERVEGVGIISGEEAINWGLSGPMLRASGIQWDLRKVDHYECYDEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+++ K GD RYLVR+ EM ES+KII+Q + + G S ++ P+ D
Sbjct: 246 DWEVQWQKEGDSLARYLVRISEMTESIKIIQQALEGIPGGPYENLEIRSFDRVRDPEWND 305
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ S K + + + E+Y VEAPKGE G++LI D P+R KIR PG+
Sbjct: 306 FEYRFIS-----KKPSPTFELSKQELYVRVEAPKGELGIFLIGDQSVFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|119368555|ref|YP_913242.1| NADH dehydrogenase 49kD subunit [Gossypium barbadense]
gi|218527773|sp|A0ZZ91|NDHH_GOSBA RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|119224917|dbj|BAF41303.1| NADH dehydrogenase 49kD subunit [Gossypium barbadense]
Length = 393
Score = 382 bits (981), Expect = e-104, Method: Composition-based stats.
Identities = 165/396 (41%), Positives = 226/396 (57%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 LSATEKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRTIIQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E E+L I++P R IRV+ E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 123 ADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPYGWLDKCLDFCDYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ + + L+T N IF +R IG + E+A WG SG M+R SG WDLRK YECY
Sbjct: 183 LTGIVEYQKLITRNPIFLERVEGIGVIGGEEAINWGLSGPMLRASGIKWDLRKVDHYECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E D++I K GD RYLVR+ EM ES+KII+Q + + G + P+
Sbjct: 243 DEFDWEIQWQKEGDSLARYLVRISEMTESIKIIQQALEGIPGGPYENLEIRCFDRERDPE 302
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
D + S+ + + +P E+YA +EAPKGE G++LI D P+R KIR P
Sbjct: 303 WNDFEYRFISI-----KPSPTFELPRQELYARMEAPKGELGIFLIGDQSGFPWRWKIRPP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 358 GFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|284009322|emb|CBA76483.1| NADH-quinone oxidoreductase chain C/D [Arsenophonus nasoniae]
Length = 614
Score = 382 bits (981), Expect = e-104, Method: Composition-based stats.
Identities = 150/393 (38%), Positives = 230/393 (58%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP++HG R++L+LDGE + P IG HRG EK+ E +++ +P
Sbjct: 226 EHEDFMFLNLGPNHPSSHGAFRIVLQLDGEEIIDCVPDIGYHHRGAEKMGERQSWHSYIP 285
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR++Y+ E Y LAVEKL GI++P R IRV+ SE+ RI SHLL ++T DV
Sbjct: 286 YTDRIEYLGGCVNEMPYVLAVEKLAGIDVPERVMTIRVMLSELFRINSHLLYISTFIQDV 345
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + + D P
Sbjct: 346 GAMTPVFFAFTDRQKIYDIIEAITGFRMHPAWFRIGGVAHDLPQGWQKLLQEFLDWMPKR 405
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L+ N I K R+V + ++A WG +G +R +G +D+RK +PY Y
Sbjct: 406 LDSYVKAALQNSILKGRSVGVAAYTTKEALDWGVTGAGLRATGLDFDIRKWRPYSGYENF 465
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+F++PIG +GDCYDR ++++ E+R+S+ I++QC+N + GP A P PP +
Sbjct: 466 EFEVPIGNNGDCYDRVMLKVEELRQSLHILKQCLNNMPA----GPFKADHPLTTPPPKER 521
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ +E++I+HF + G +P E + +EA KG YL SDG YR ++R P +A
Sbjct: 522 TLQHIETMINHFLQVSWGPVMPANEAFQMIEATKGINSYYLTSDGNTMSYRTRVRTPSFA 581
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 582 HLQQIPAVIRGSLVSDLIVYLGSIDFVMSDVDR 614
>gi|290489830|gb|ADD31322.1| NADH-plastoquinone oxidoreductase subunit 7 protein [Liquidambar
styraciflua]
Length = 393
Score = 382 bits (981), Expect = e-104, Method: Composition-based stats.
Identities = 164/393 (41%), Positives = 226/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIITLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E+L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEQLANIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F +
Sbjct: 126 GAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPHGWIDKCLDFCDYFLTG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + +L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY E
Sbjct: 186 VAEYQNLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYECYDEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+++ K GD RYLVR+ EM ES+KII+Q + + G ++ P+ D
Sbjct: 246 DWEVQWQKEGDSLARYLVRISEMTESIKIIQQALEGIPGGPYENLEIRCFDRVRDPEWND 305
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ S K + + + E+Y VEAPKGE G++LI D P+R KIR PG+
Sbjct: 306 FEYRFIS-----KKPSPTFELSKQELYVRVEAPKGELGIFLIGDQSVFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|197131404|gb|ACH47220.1| NADH-plastoquinone oxidoreductase subunit 7 [Sarcocaulon
vanderietiae]
Length = 395
Score = 382 bits (981), Expect = e-104, Method: Composition-based stats.
Identities = 167/397 (42%), Positives = 226/397 (56%), Gaps = 5/397 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ ++ +N GP HP+ HGVLRLIL LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 IPATRNDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPVLGYLHRGMEKIAENRTIIQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E A EKL I++P R IR + E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEGITVNAPEKLGNIQVPKRASYIRTILLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 123 ADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPHGWIDKCLDFCDYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ L + L+T N IF +R IG + E+A WG SG M+R S WDLRK YECY
Sbjct: 183 LTGLAEYEKLITRNPIFLERVEGIGIIGKEEAINWGLSGPMLRASAIQWDLRKIDNYECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+E D+++ K GD R+LVR+ EMRES+KII+Q + + G GP + +
Sbjct: 243 NEFDWEVQWQKEGDSLARFLVRIGEMRESIKIIQQALEGIPG----GPYENLEIRCFDRD 298
Query: 301 RADMKRSME-SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
R K + + +P E+Y VEAPKGE G++LI D P+R KIR
Sbjct: 299 REGYIEWGGFEYRFVSKKPSPTFELPKQELYVRVEAPKGELGIFLIGDQSAFPWRWKIRP 358
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
PG+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 359 PGFMNLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 395
>gi|115531968|ref|YP_784124.1| NADH-plastoquinone oxidoreductase subunit 7 [Pelargonium x
hortorum]
gi|115531977|ref|YP_784133.1| NADH-plastoquinone oxidoreductase subunit 7 [Pelargonium x
hortorum]
gi|122164262|sp|Q06FP8|NDHH_PELHO RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|112382122|gb|ABI17315.1| NADH-plastoquinone oxidoreductase subunit 7 [Pelargonium x
hortorum]
gi|112382131|gb|ABI17324.1| NADH-plastoquinone oxidoreductase subunit 7 [Pelargonium x
hortorum]
Length = 393
Score = 382 bits (981), Expect = e-104, Method: Composition-based stats.
Identities = 164/396 (41%), Positives = 225/396 (56%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + +N GP HP+ HGVLRLIL LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 IPATRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPVLGYLHRGMEKIAENRTIIQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E A E+L I++P R IR + E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEVITVNAPEQLGNIQVPKRAGYIRTIMLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +C+ F
Sbjct: 123 ADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPHGWIDKCLDFCNYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ L + L+T N IF +R IG + E+A WG SG M+R SG WDLRK ECY
Sbjct: 183 LTGLAEYEKLITRNPIFLERVEGIGIIGKEEAISWGLSGPMLRASGMQWDLRKIDNSECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+ D+++ K GD RYLVR+ EMRES+K+I+Q + + G + P+
Sbjct: 243 KKFDWEVQWQKEGDSLARYLVRIGEMRESIKMIQQALEGIPGGPYENLEIRCFDRERYPE 302
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ S K + + +P E+Y VEAPKGE GV+LI D + P+R KIR P
Sbjct: 303 WGGFEYRFIS-----KKPSPTFELPKQELYVRVEAPKGELGVFLIGDRSSFPWRWKIRPP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 358 GFMNLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|315453249|ref|YP_004073519.1| NADH-quinone oxidoreductase subunit [Helicobacter felis ATCC 49179]
gi|315132301|emb|CBY82929.1| NADH-quinone oxidoreductase subunit [Helicobacter felis ATCC 49179]
Length = 409
Score = 382 bits (981), Expect = e-104, Method: Composition-based stats.
Identities = 173/394 (43%), Positives = 244/394 (61%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++ + INFGPQHP++HG LRLILEL+GE + + P IG LHRG EKL E T+ + +
Sbjct: 18 ERDDKQMVINFGPQHPSSHGQLRLILELEGEKITKATPEIGYLHRGCEKLGENMTYNEYM 77
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DRLDY + + +A+A AVE LLG++IP R Q+IR L E+ R++SH+ ++ A+D
Sbjct: 78 PTTDRLDYTSSTSNNYAFAHAVETLLGVQIPRRAQVIRTLLLELNRVISHVFFLSVHALD 137
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA++ L+ F+ RE + E G+R+ R GGV D+PP +E + +
Sbjct: 138 VGAMSVFLYCFKTREYGLDLMEDYCGARLTHNAIRIGGVPLDLPPNWLEGLKAFIKEVRD 197
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
IS LL NRI+K R N+GT+ E A WG SG+M+RG+G A+D+RK +PYE Y E
Sbjct: 198 MHKLISGLLDSNRIWKARLENVGTISQEQAKSWGASGIMLRGTGIAYDVRKEEPYELYPE 257
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LDFDIP+G HGD YDRY + M+E+ ES++I+ Q + + P+ +
Sbjct: 258 LDFDIPVGNHGDSYDRYQLYMLEIEESLRILEQLIPMYAPTEPQ--IMTHAPQYFSAPKE 315
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
D+ +L+ HF L T+G P GEVYA E+PKGE G ++ S+G PYR KIRAP +
Sbjct: 316 DIMTQNYALMQHFVLVTQGMRPPRGEVYAPTESPKGELGFFIHSEGEPYPYRLKIRAPSF 375
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H+ +M+ + G LAD I+GS + VFGEVDR
Sbjct: 376 FHIGSMQDILVGQYLADAVTIIGSSNAVFGEVDR 409
>gi|156573593|gb|ABU85133.1| NADH-plastoquinone oxidoreductase subunit 7 [Yucca schidigera]
Length = 393
Score = 382 bits (981), Expect = e-104, Method: Composition-based stats.
Identities = 163/396 (41%), Positives = 228/396 (57%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 LPATRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E A E+L +++P R IRV+ E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEAITVNAPERLESVQVPKRASYIRVIMLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE L +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 123 ADIGAQTPFFYIFRERELLYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ + + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY
Sbjct: 183 LTGIVEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDRYECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
++ D+++ K GD RYLVR+ EM+ES+KII+Q + + G GP + +
Sbjct: 243 NKFDWEVQWQKEGDSLARYLVRIGEMKESIKIIQQALEGIPG----GPYENLEVRRFDRA 298
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ + E K + + + E+Y VEAPKGE G++LI D P+R KIR P
Sbjct: 299 KNSEWTNFE-YRFITKKLSPNFELSKQELYVRVEAPKGELGIFLIGDSSVFPWRWKIRPP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 358 GFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|313681396|ref|YP_004059134.1| NADH dehydrogenase subunit d [Sulfuricurvum kujiense DSM 16994]
gi|313154256|gb|ADR32934.1| NADH dehydrogenase subunit D [Sulfuricurvum kujiense DSM 16994]
Length = 408
Score = 382 bits (981), Expect = e-104, Method: Composition-based stats.
Identities = 171/391 (43%), Positives = 241/391 (61%), Gaps = 2/391 (0%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+NFGPQHP+AHG LRL+L L E + + P IG LHRG EK+ E + + +P
Sbjct: 20 DNELILNFGPQHPSAHGQLRLMLHLQQEQITKAHPDIGYLHRGMEKMAENMIYNEFMPTT 79
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DR+DY+A + + +ALAVE+L+G+++P R ++IR++ E R++SHL + T A+D+GA
Sbjct: 80 DRMDYIASSSNNYGFALAVERLIGLDVPRRAKVIRMMLLETNRLMSHLFWLATTALDIGA 139
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+T L+ F ERE LM E G+R+ A R GGV D+P + D+ + D P +
Sbjct: 140 MTVFLFAFREREYLMDLIEDYCGARLTHAAVRIGGVPLDLPDNFIPDLRKFLDKLPENIK 199
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
D DLL NRI+K R N+G + E A WG SG+M+R SG WD+RK +PYE Y E+DF
Sbjct: 200 DYEDLLDTNRIWKMRMENVGVISKEMAQSWGCSGIMLRASGVEWDIRKEEPYELYDEVDF 259
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
++P+ GD Y RY + M EMRES KI+ Q ++ G + A P+ + + D+
Sbjct: 260 NVPVSDKGDNYARYKLYMAEMRESAKILYQVLDMYEGTGPE--LMAHAPQYISAPKIDIM 317
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
SL+ HF L T+G PVGEVY A E+PKGE G ++ S GG PYR K+RAP + H
Sbjct: 318 TQNYSLMQHFVLVTQGMRPPVGEVYVATESPKGELGYFINSQGGAYPYRLKLRAPSFWHT 377
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ L GH + DV +I+G+ +IVFGEVDR
Sbjct: 378 GILTDLLPGHYIPDVVSIIGTTNIVFGEVDR 408
>gi|317046227|ref|YP_004072516.1| NADH dehydrogenase 49 kDa subunit [Corynocarpus laevigata]
gi|309252944|gb|ADO60364.1| NADH dehydrogenase 49 kDa subunit [Corynocarpus laevigata]
Length = 393
Score = 382 bits (981), Expect = e-104, Method: Composition-based stats.
Identities = 166/398 (41%), Positives = 227/398 (57%), Gaps = 7/398 (1%)
Query: 1 MDK--KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTF 58
M++ + +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T
Sbjct: 1 MNEPATRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTI 60
Query: 59 LQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTT 118
+Q +PY R DY+A M E E+L I++P R IRV+ E+ RI SHLL +
Sbjct: 61 IQYLPYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGP 120
Query: 119 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
D+GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD
Sbjct: 121 FMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCD 180
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
F + + + L+T N IF +R +G V E+ WG SG M+R SG WDLRK YE
Sbjct: 181 YFLTGVAEYEKLITQNPIFLERVEGVGIVGGEEGINWGLSGPMLRASGIQWDLRKVDHYE 240
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
CY E D+++ K GD RYLVR+ EM ES+KII+Q + + G +
Sbjct: 241 CYDEFDWEVQWQKEGDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEIRCFDRETY 300
Query: 299 PKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
P+ D + S K + + +P E+Y VEAPKGE G++LI D G P+R KIR
Sbjct: 301 PEWNDFEYRFIS-----KKPSPTFELPKQELYVRVEAPKGELGIFLIGDQGGFPWRWKIR 355
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
PG+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 356 PPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|290489824|gb|ADD31319.1| NADH-plastoquinone oxidoreductase subunit 7 protein [Ficus sp.
Moore 315]
Length = 393
Score = 382 bits (981), Expect = e-104, Method: Composition-based stats.
Identities = 161/396 (40%), Positives = 219/396 (55%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 IPATRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E E L I++P R IR + E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEAITVNGPELLGNIQVPKRASYIRAIMLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 123 ADIGAQTPFFYIFRERELVYDLFEDATGMRMMHNYFRIGGVAADLPHGWIDKCLDFCDYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ + L+T N IF +R +G + E+ WG SG M+R SG WDLRK YECY
Sbjct: 183 LIGVTEYQKLITRNPIFLERVEGVGIIGREEVINWGLSGPMLRASGIQWDLRKVDRYECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E D+++ GD RYLVR+ EM ES+KII+Q + + G + P+
Sbjct: 243 DEFDWEVQWQNEGDSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLEIRYFDRERNPE 302
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
D S K + + +P E+Y VEAPKGE G++LI D P+R KIR P
Sbjct: 303 WNDFDYRFIS-----KKPSPTFELPKQELYVRVEAPKGELGIFLIGDLSGFPWRWKIRPP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 358 GFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|78778020|ref|YP_394335.1| NADH dehydrogenase subunit D [Sulfurimonas denitrificans DSM 1251]
gi|123549717|sp|Q30PI1|NUOD_SULDN RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|78498560|gb|ABB45100.1| NADH dehydrogenase I, D subunit [Sulfurimonas denitrificans DSM
1251]
Length = 412
Score = 382 bits (981), Expect = e-104, Method: Composition-based stats.
Identities = 170/396 (42%), Positives = 239/396 (60%), Gaps = 2/396 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++ +NFGPQHP+AHG LRL+L L E++ + P IG LHRG EK+ E + + +
Sbjct: 17 DREDNEMILNFGPQHPSAHGQLRLMLHLQQEMIVKAHPDIGYLHRGMEKMAENMIYNEFM 76
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DR+DY+A + +ALAVE+L+G+E+P R ++IR++ EI R++SHL + T A+D
Sbjct: 77 PTTDRMDYIASSANNYGFALAVERLIGLEVPRRAKVIRMMLLEINRLMSHLFWLATTALD 136
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA+T L+ F ERE LM E G+R+ A R GGV DI + + + D P
Sbjct: 137 IGAMTVFLFAFREREYLMDIMEGYCGARLTHAAIRIGGVPLDIQDTFITQLKTFLDKLPQ 196
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ D DLL NRI+ R +G + E A WG SG M+R SG AWD+RK +PYE Y E
Sbjct: 197 NIKDYEDLLDTNRIWLMRMEEVGVISKEMALSWGCSGPMLRASGVAWDIRKEEPYELYDE 256
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLG--KNKVGPVSASDPKIVPPK 300
++F +P GD + RY + M EMRES KI+ Q ++ K+ + A PK +
Sbjct: 257 VEFRVPYSDKGDNFARYRIYMEEMRESAKILYQTIDMYEKCVKDNQTELMAHAPKYISAP 316
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ D+ SL+ HF L T+G PVGEVY A E+PKGE G Y+ S GG PYR K+RAP
Sbjct: 317 KLDIMTQNYSLMQHFVLVTQGMRPPVGEVYVATESPKGELGFYINSQGGPYPYRLKLRAP 376
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ H + + GH + DV +I+G+ +IVFGEVDR
Sbjct: 377 SFWHTGILTDILPGHYIPDVVSIIGTTNIVFGEVDR 412
>gi|229577810|ref|YP_002836146.1| NADH-plastoquinone oxidoreductase subunit 7 [Megaleranthis
saniculifolia]
gi|226933938|gb|ACO92071.1| NADH-plastoquinone oxidoreductase subunit 7 [Megaleranthis
saniculifolia]
Length = 393
Score = 382 bits (981), Expect = e-104, Method: Composition-based stats.
Identities = 162/396 (40%), Positives = 224/396 (56%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 IPTTRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPVLGYLHRGMEKIAENRTIIQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E E+L I++P R +RV+ E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYLRVIMLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 123 ADIGAQTPFFYILRERELIYDLFESATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ + D L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY
Sbjct: 183 LTGVTDYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E D+++ K GD RYLVR+ EM ES+KII+Q + + G GP + +
Sbjct: 243 DEFDWEVQWQKEGDSLARYLVRINEMTESIKIIQQALEGIPG----GPHENLEVRRFDRT 298
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ + K + + + E+Y VEAPKGE G++LI D P+R KIR P
Sbjct: 299 KDSEWNDFD-YRFISKKPSPTFELSKQELYVRVEAPKGELGIFLIGDRSVFPWRWKIRPP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 358 GFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|91984049|ref|YP_567134.1| NADH dehydrogenase subunit 7 [Vitis vinifera]
gi|122224042|sp|Q0ZIW2|NDHH_VITVI RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|91701707|gb|ABE47591.1| NADH-plastoquinone oxidoreductase subunit 7 [Vitis vinifera]
Length = 393
Score = 381 bits (980), Expect = e-104, Method: Composition-based stats.
Identities = 163/393 (41%), Positives = 224/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TREDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E+L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F +
Sbjct: 126 GAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPHGWIDKCLDFCDYFLTG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + +E+A WG SG M+R SG WDLRK YECY E
Sbjct: 186 VAEYQKLITRNPIFLERVEGVGIIGVEEAINWGLSGPMLRASGIQWDLRKVDHYECYDEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+++ K GD RYLVR+ EM S+KII+Q + + G + P+ D
Sbjct: 246 DWEVQWQKEGDSLSRYLVRIGEMVASIKIIQQALEGIPGGPYENLEIRCFDRARDPELND 305
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ S K + + + E+Y VEAPKGE G++LI D P+R KIR PG+
Sbjct: 306 FEYRFIS-----KKPSPTFELSKQELYVRVEAPKGELGIFLIGDQNVFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|197131406|gb|ACH47221.1| NADH-plastoquinone oxidoreductase subunit 7 [Pelargonium
cotyledonis]
Length = 393
Score = 381 bits (980), Expect = e-104, Method: Composition-based stats.
Identities = 164/396 (41%), Positives = 226/396 (57%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + +N GP HP+ HGVLRLIL LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 IPATRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPVLGYLHRGMEKIAENRTIIQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E A E+L I++P R IR + E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEVITVNAPEQLGNIQVPKRAGYIRTIMLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +C+ F
Sbjct: 123 ADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPHGWIDKCLDFCNYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ L + L+T N IF +R IG + E+A WG SG M+R SG WDLRK + ECY
Sbjct: 183 LTGLAEYEKLITRNPIFLERVEGIGIIGKEEAINWGLSGPMLRASGMQWDLRKIENSECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+ D+++ K GD RYLVR+ EMRES+KII+Q + + G + P+
Sbjct: 243 KKFDWEVQWQKEGDSLARYLVRIGEMRESIKIIQQALEGIPGGPYENLEIRCFDRERYPE 302
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ S K + + +P E+Y VEAPKGE GV++I D + P+R KIR P
Sbjct: 303 WGGFEYRFIS-----KKPSPTFELPKQELYVRVEAPKGELGVFMIGDRSSFPWRWKIRPP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 358 GFMNLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|115604991|ref|YP_784443.1| NADH-plastoquinone oxidoreductase subunit 7 [Drimys granadensis]
gi|122164390|sp|Q06GU0|NDHH_DRIGR RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|112032719|gb|ABH88354.1| NADH-plastoquinone oxidoreductase subunit 7 [Drimys granadensis]
Length = 393
Score = 381 bits (980), Expect = e-104, Method: Composition-based stats.
Identities = 165/393 (41%), Positives = 223/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K IN GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TKKDLMIINMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E+L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE L +E A+G RM YFR GGV D+P ++ +CD +
Sbjct: 126 GAQTPFFYIFRERELLYDLFEAATGMRMMHNYFRIGGVAADLPHGWIDKCLDFCDYSLTG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY E
Sbjct: 186 VVEYQKLITRNPIFLERVEEVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYECYDEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+++ K GD RYLVR+ EM ES+KI++Q + + G GP + + +
Sbjct: 246 DWEVQWQKEGDSLARYLVRISEMTESIKILQQALEGIPG----GPYENLEVRRFDRAKDS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G++LI D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFISKKPSPTFELLKQELYVRVEAPKGELGIFLIGDNSVFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|290489796|gb|ADD31305.1| NADH-plastoquinone oxidoreductase subunit 7 protein [Antirrhinum
majus]
Length = 393
Score = 381 bits (980), Expect = e-104, Method: Composition-based stats.
Identities = 161/394 (40%), Positives = 223/394 (56%), Gaps = 5/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +
Sbjct: 5 TTRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTVIQYL 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R DY+A M E E+L I++P R IR + E+ RI SHLL + D
Sbjct: 65 PYVTRWDYLATMFTEVITVNGPEQLGNIQVPKRASYIRAIMLELSRIASHLLWLGPFMAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F +
Sbjct: 125 IGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLT 184
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ + L++ N IF +R +G + ++A WG SG M+R SG WDLRK YECY E
Sbjct: 185 RVAEYQKLISRNPIFLERVEGVGIIGADEALNWGLSGPMLRASGIQWDLRKVDRYECYDE 244
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
D+++ K GD RYLVR+ EM ES+KII+Q + + G GP + + K+
Sbjct: 245 FDWEVQWQKEGDSLARYLVRISEMTESIKIIQQALEGIPG----GPYENLEIRRFDRKKK 300
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
E K + + + E+Y VEAPKGE G++LI D P+R KIR PG+
Sbjct: 301 LEWNDFE-YRFISKKPSPTFELSKQELYVRVEAPKGELGIFLIGDQSVFPWRWKIRPPGF 359
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 360 INLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|159030887|emb|CAO88568.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 394
Score = 381 bits (980), Expect = e-104, Method: Composition-based stats.
Identities = 164/395 (41%), Positives = 229/395 (57%), Gaps = 6/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +N GP HP+ HGVLRLI+ LDGE V +P IG LHRG EK+ E +T + V
Sbjct: 5 ETRTEPMVLNMGPHHPSMHGVLRLIVTLDGEDVIDCEPVIGYLHRGMEKIAENRTNVMYV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R DY A M E A EKL I +P R Q IRV+ E+ RI +HLL + D
Sbjct: 65 PYVSRWDYAAGMFNEAITVNAPEKLADIAVPKRAQYIRVIMLELNRIANHLLWLGPFMAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSR-MHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E A+G R ++ YFR GGV D+P V+ +CD F
Sbjct: 125 VGAQTPFFYIFREREMIYDLWEAATGMRLINNNYFRIGGVAVDLPYGWVDKCVDFCDYFD 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R +G + E+A WG SG M+R SG WDLRK YECY
Sbjct: 185 PKVDEYEKLITNNPIFRRRIEGVGCITREEAINWGLSGPMLRASGVKWDLRKVDHYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+++ GDC+ RYLVR+ EMRESVKIIRQ + L G GP + K + +
Sbjct: 245 DFDWEVHWETAGDCFARYLVRIREMRESVKIIRQALKGLPG----GPYENLEAKRMAEGK 300
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ + K + +P GE Y +E+ KGE G++++ + P+R KIRA
Sbjct: 301 KSAWNDFD-YQYIAKKVAPTFKIPKGEHYVRLESGKGELGIFIVGNDDVFPWRWKIRAAD 359
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +LQ + + KG ++AD+ AILGS+DI+ G VDR
Sbjct: 360 FNNLQILPHILKGVKVADIMAILGSIDIIMGSVDR 394
>gi|224437356|ref|ZP_03658328.1| NADH dehydrogenase subunit D [Helicobacter cinaedi CCUG 18818]
gi|313143819|ref|ZP_07806012.1| donor-ubiquinone reductase I [Helicobacter cinaedi CCUG 18818]
gi|313128850|gb|EFR46467.1| donor-ubiquinone reductase I [Helicobacter cinaedi CCUG 18818]
Length = 409
Score = 381 bits (980), Expect = e-104, Method: Composition-based stats.
Identities = 168/394 (42%), Positives = 242/394 (61%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++++ INFGPQHP+AHG LRLILEL+ E + + P IG LHRG EK+ E + + +
Sbjct: 18 EQENDKMVINFGPQHPSAHGQLRLILELENEKIIKATPDIGYLHRGIEKMAENMIYNEFM 77
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DRLDY+A + +A+AL VEKL+G+E+P+R ++IR + EI RI+SH+ + MD
Sbjct: 78 PTTDRLDYIAATSNNYAFALGVEKLIGVEVPLRAKVIRTMLLEINRIISHIFFLGVHGMD 137
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGAL+ L+ F ERE + E G+R+ R GGV D+P ++ + + S P
Sbjct: 138 VGALSIFLYCFIEREYGLDLMEDYCGARLTHNAIRIGGVPLDLPHNFLQSVERFTQSVPK 197
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ + LL NRI++ R ++G V + WG SG+M RGSG WD+RK PYE Y+E
Sbjct: 198 TLDLVRGLLDKNRIWRIRLEDVGVVSQDFIKQWGLSGIMARGSGIKWDIRKHNPYELYNE 257
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LDF++P+ GDCY RY + + E+ ES+KI++Q + + A D + + +
Sbjct: 258 LDFEVPVANEGDCYARYQLYIEEIYESIKILKQLMTMYPSTP--SEIMAKDARYISAPKE 315
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
D+ SL+ HF L T+G PVGEVY E+PKGE G ++ S G P+R KIR P +
Sbjct: 316 DIMTQNYSLMQHFVLVTQGMRPPVGEVYVPTESPKGELGFFINSQGMPSPHRLKIRTPSF 375
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H A++ L GH +AD+ I+GS +IVFGEVDR
Sbjct: 376 YHTGALQELLVGHYVADIPTIIGSTNIVFGEVDR 409
>gi|296124092|ref|YP_003631870.1| NADH dehydrogenase (quinone) [Planctomyces limnophilus DSM 3776]
gi|296016432|gb|ADG69671.1| NADH dehydrogenase (quinone) [Planctomyces limnophilus DSM 3776]
Length = 420
Score = 381 bits (980), Expect = e-104, Method: Composition-based stats.
Identities = 171/389 (43%), Positives = 234/389 (60%), Gaps = 5/389 (1%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
T+NFGPQHPA H LRL+L LDGE V + +P IG LH G EKL E+ F Q V DR++
Sbjct: 35 TLNFGPQHPATHTTLRLVLTLDGEKVVKAEPDIGYLHSGFEKLGESLDFNQYVTIVDRMN 94
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
Y++P+ E A+ VEKLLGIEI R +R + +E+ R+ HLL V A+D+GA T
Sbjct: 95 YISPLANEIAWHHTVEKLLGIEITPRCTYLRTILAELMRLHDHLLCVGAVALDLGAFTAF 154
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
L+ F++RE + E ASG R H +Y R GGV D+ + + + +FP +++
Sbjct: 155 LYFFQQRELIYDIVEYASGQRFHTSYTRVGGVLFDVNNLWADKVRSFAKNFPKIHSEVDR 214
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
LLT NRIF R +G + EDA G +G + R SG DLRK +PY Y++LDF I
Sbjct: 215 LLTKNRIFVDRVKGVGVLSREDAINMGCTGPIARASGVVRDLRKDEPYLAYADLDFKIAA 274
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
K+GDCY RYLVRM EM ES+KII Q + + + K V P + + RS+E
Sbjct: 275 SKNGDCYARYLVRMQEMLESIKIINQAIENIPAGPVNVELEG---KSVLPSKPAVYRSIE 331
Query: 310 SLIHHFKLYTE--GYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
LIHHF++ G+ VPV E+YA E+P GE G Y+++DG + YR + R P + H
Sbjct: 332 GLIHHFEMIMPNRGFKVPVEELYACTESPNGELGFYIVADGEPRAYRARCRPPSFIHFAT 391
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ L G+ L+DV AILGSL+I+ E+DR
Sbjct: 392 FQHLMPGYMLSDVPAILGSLNIIAAELDR 420
>gi|81176307|ref|YP_398384.1| NADH dehydrogenase subunit 7 [Lactuca sativa]
gi|122212007|sp|Q332S1|NDHH_LACSA RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|78675225|dbj|BAE47651.1| NADH dehydrogenase 49KDa subunit [Lactuca sativa]
gi|88657032|gb|ABD47282.1| NADH-plastoquinone oxidoreductase subunit 7 [Lactuca sativa]
Length = 393
Score = 381 bits (980), Expect = e-104, Method: Composition-based stats.
Identities = 162/393 (41%), Positives = 226/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E+L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM +FR GG+ D+P ++ +CD F +
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNFFRIGGIAADLPHGWIDKCLDFCDYFLTG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY E
Sbjct: 186 IAEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYECYDEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+++ GD RYLVR+ EM ES+KII+Q + + G GP + + +
Sbjct: 246 DWEVQWQNEGDSLARYLVRISEMTESIKIIQQALEGIPG----GPYENLEIRRFDRVKDT 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ + K + + + E+YA VEAPKGE G++LI D G P+R KIR PG+
Sbjct: 302 VWNEFD-YRFISKKPSPTFELSKQELYARVEAPKGELGIFLIGDKGVFPWRYKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|170727206|ref|YP_001761232.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Shewanella
woodyi ATCC 51908]
gi|218534244|sp|B1KJV0|NUOCD_SHEWM RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|169812553|gb|ACA87137.1| NADH dehydrogenase I, D subunit [Shewanella woodyi ATCC 51908]
Length = 598
Score = 381 bits (980), Expect = e-104, Method: Composition-based stats.
Identities = 164/393 (41%), Positives = 232/393 (59%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K + +N GP HP+ HGV R+ L+LDGE + P IG HRG EK+ E +T+ +P
Sbjct: 211 KDNDYLFLNLGPNHPSVHGVFRIALQLDGEHIINSVPDIGYHHRGAEKIAERQTWHGFIP 270
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ + Y LA+E+L I++ R + IRV+ +E RILSH+L T A DV
Sbjct: 271 YTDRIDYLGGVMNNFPYILAIEQLANIQVSERVKCIRVMLAECFRILSHMLFFGTFAQDV 330
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G L+P + F +REKL E +G+RMH ++FR GG+ QD+P + + D FP
Sbjct: 331 GQLSPIFYLFIDREKLFGIIEAITGARMHPSWFRIGGLAQDLPKGWDTMMQEFVDEFPKK 390
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L++ ++ N I K+R++ IG ++A W +G +R +G WDLRK++PY Y
Sbjct: 391 LDEYEVMVMQNSILKRRSIGIGQYNTQEALDWNITGAGLRATGLEWDLRKARPYSGYENY 450
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DF++P G GD YDR +R+ EMR+SVKII+QC+N + G V A P PP +
Sbjct: 451 DFEVPTGHKGDAYDRCQLRVEEMRQSVKIIQQCINNM----PEGEVKADHPLTTPPSQ-R 505
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
K +E+LI HF + G +P GE AVEA KG +ISDG N YR +IR P +A
Sbjct: 506 SKHDIETLIQHFLNVSWGPVMPKGESCFAVEATKGVNAYTIISDGSNTSYRTRIRTPSFA 565
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ + + KG +AD+ IL S+D V +VDR
Sbjct: 566 HLQMIPKMAKGLMVADLIVILASIDFVMADVDR 598
>gi|290489802|gb|ADD31308.1| NADH-plastoquinone oxidoreductase subunit 7 protein [Ehretia
acuminata]
Length = 393
Score = 381 bits (980), Expect = e-104, Method: Composition-based stats.
Identities = 164/393 (41%), Positives = 224/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E E+L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F +
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLTG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY E
Sbjct: 186 VAEYQKLITRNPIFLERVEGVGIIGGEEAKNWGLSGPMLRASGIQWDLRKVDHYECYDEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+++ K GD RYLVR+ EM ES+KII+Q + + G K+ P+ D
Sbjct: 246 DWEVQWQKEGDSLARYLVRISEMTESIKIIQQALEGIPGGPYENLEIRRFDKVKDPEWND 305
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ S K + + + E+Y VEAPKGE G++LI D P+R KIR PG+
Sbjct: 306 FEYRFIS-----KKPSPTFELSKQELYVRVEAPKGELGIFLIGDQSVFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPHLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|298566677|gb|ADI86459.1| NADH-plastoquinone oxidoreductase subunit 7 [Eriachne pulchella]
Length = 393
Score = 381 bits (979), Expect = e-104, Method: Composition-based stats.
Identities = 159/393 (40%), Positives = 220/393 (55%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G M YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMXMMHNYFRIGGVAADLPYGWMDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YE Y++
Sbjct: 186 VVEYQQLITRNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKIDIYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+ + K GD RYLVR+ EM ES+KII+Q + ++ G GP + + +
Sbjct: 246 AWKVQWQKEGDSLARYLVRIGEMGESIKIIQQAIRKIPG----GPYENLEARRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G++L+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIFLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L + +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVQKMKLADIMTILGSIDIIMGEVDR 393
>gi|52220867|ref|YP_087022.1| NADH dehydrogenase subunit 7 [Panax ginseng]
gi|75289350|sp|Q68RV0|NDHH_PANGI RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|51235370|gb|AAT98566.1| NADH dehydrogenase 49kD subunit [Panax ginseng]
Length = 393
Score = 381 bits (979), Expect = e-103, Method: Composition-based stats.
Identities = 165/393 (41%), Positives = 224/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
++ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRNDLMIVNLGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E+L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFLADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F +
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPHGWIDKCLDFCDFFLTR 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + +A WG SG M+R SG WDLRK YE Y E
Sbjct: 186 VTEYQKLITRNPIFLERVEGVGIIGGAEAINWGLSGPMLRASGIQWDLRKVDHYESYDEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EM ES+KII+Q + + G K+ P+ D
Sbjct: 246 DWGVQWQKEGDSLARYLVRISEMTESIKIIQQALEGIPGGPYENLEIRRFDKVRDPEWND 305
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
S K + + + E+Y VEAPKGE G++LI D G P+R KIR PG+
Sbjct: 306 FDYRFIS-----KKPSPTFELSKQELYVRVEAPKGELGIFLIGDRGVFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|283795024|ref|YP_003359415.1| NADH dehydrogenase 49 kDa protein [Olea europaea]
gi|330850799|ref|YP_004376477.1| NADH dehydrogenase subunit 7 [Olea europaea subsp. europaea]
gi|281428743|gb|ADA69982.1| NADH dehydrogenase 49 kDa protein [Olea europaea]
gi|291059310|gb|ADD72146.1| NADH-plastoquinone oxidoreductase subunit 7 [Olea europaea]
gi|328795489|emb|CBR30371.1| NADH dehydrogenase subunit 7 [Olea europaea subsp. europaea]
Length = 393
Score = 381 bits (979), Expect = e-103, Method: Composition-based stats.
Identities = 161/394 (40%), Positives = 222/394 (56%), Gaps = 5/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +
Sbjct: 5 TTRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYL 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R DY+A M E E+L I++P R IR + E+ RI SHLL + D
Sbjct: 65 PYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRAIMLELSRIASHLLWLGPFMAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA TP + F ERE + +E A+G RM YFR GG+ D+P ++ +CD F +
Sbjct: 125 IGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGIAADLPHGWIDKCLDFCDYFLT 184
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY E
Sbjct: 185 GVAEYQKLITRNPIFLERVEGVGIIGGEEALNWGLSGPMLRASGIQWDLRKVDHYECYDE 244
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
D+++ K GD RYLVR+ EM ES+KII+Q + + G GP + + +
Sbjct: 245 FDWEVQWQKEGDSLARYLVRIGEMTESIKIIQQALEGIPG----GPFENLEIRRFDRVKD 300
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
E K + + + E+Y VEAPKGE G++LI D P+R KIR PG+
Sbjct: 301 TEWNDFE-YRFISKKPSPTFELSKQELYVRVEAPKGELGIFLIGDQSVFPWRWKIRPPGF 359
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 360 INLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|237751582|ref|ZP_04582062.1| NADH-quinone oxidoreductase [Helicobacter bilis ATCC 43879]
gi|229372948|gb|EEO23339.1| NADH-quinone oxidoreductase [Helicobacter bilis ATCC 43879]
Length = 409
Score = 381 bits (979), Expect = e-103, Method: Composition-based stats.
Identities = 171/394 (43%), Positives = 240/394 (60%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++ +N GPQHP+AHG LRLILELDGE+V++ P IG LHRG EKL E + + +
Sbjct: 18 EQDEGKMVVNLGPQHPSAHGQLRLILELDGEMVKKAYPDIGYLHRGIEKLAENMIYNEFM 77
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DR+DY A + HA+A VE LLG+E+P R ++IR + E+ RI+SH L + T A+D
Sbjct: 78 PTTDRMDYTAASSNNHAFAYGVETLLGVEVPRRAKVIRTILLELNRIISHFLFMATHALD 137
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA++ L+ F+ RE ++ E G+R+ R GGV DIP E+I +
Sbjct: 138 VGAMSVFLYAFKGREYVLDMIEDYCGARLTHNSIRIGGVPLDIPHNWFENIESCLNEVTK 197
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+N I LL NRI++ R +G + E A +G SGVM+RGSG +D+RK +PYE Y E
Sbjct: 198 TINLIKGLLDKNRIWRMRLEGVGKISKEMAQDYGLSGVMLRGSGIPYDIRKEEPYEIYDE 257
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LDF +P GDCY RY++ E+ +S IIRQ + L K+ + A P+ + +
Sbjct: 258 LDFSVPFTDSGDCYGRYVLYTEEVFQSCSIIRQAMK--LYKDTDTALMAHAPQYISAPKE 315
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
D+ SL+ HF L T+G P GEVYA E+PKGE G ++ S G P+R KI+AP +
Sbjct: 316 DVMTQNYSLMQHFVLVTQGMRPPKGEVYAPTESPKGELGFFISSLGNPYPHRVKIKAPSF 375
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ +E + GH LADV I+G+ +I+ GE+DR
Sbjct: 376 YHLQVLEAMLPGHYLADVITIIGNSNIILGEIDR 409
>gi|166367967|ref|YP_001660240.1| NAD(P)H-quinone oxidoreductase subunit H [Microcystis aeruginosa
NIES-843]
gi|229891144|sp|B0JY10|NDHH_MICAN RecName: Full=NAD(P)H-quinone oxidoreductase subunit H; AltName:
Full=NAD(P)H dehydrogenase subunit H; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H;
AltName: Full=NDH-1 subunit H; Short=NDH-H
gi|166090340|dbj|BAG05048.1| NADH dehydrogenase subunit 7 [Microcystis aeruginosa NIES-843]
Length = 394
Score = 381 bits (979), Expect = e-103, Method: Composition-based stats.
Identities = 164/395 (41%), Positives = 229/395 (57%), Gaps = 6/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +N GP HP+ HGVLRLI+ LDGE V +P IG LHRG EK+ E +T + V
Sbjct: 5 ETRTEPMVLNMGPHHPSMHGVLRLIVTLDGEDVIDCEPVIGYLHRGMEKIAENRTNVMYV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R DY A M E A EKL I +P R Q IRV+ E+ RI +HLL + D
Sbjct: 65 PYVSRWDYAAGMFNEAITVNAPEKLADIAVPKRAQYIRVIMLELNRIANHLLWLGPFMAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSR-MHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E A+G R ++ YFR GGV D+P V+ +CD F
Sbjct: 125 VGAQTPFFYIFREREMIYDLWEAATGMRLINNNYFRIGGVAVDLPYGWVDKCVDFCDYFD 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R IG + ++A WG SG M+R SG WDLRK YECY
Sbjct: 185 PKVDEYEKLITNNPIFRRRIEGIGCITRDEAINWGLSGPMLRASGVKWDLRKVDHYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+++ GDC+ RYLVR+ EMRESVKIIRQ + L G GP + K + +
Sbjct: 245 DFDWEVHWETAGDCFARYLVRIREMRESVKIIRQALKGLPG----GPYENLEAKRMAEGK 300
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ + K + +P GE Y +E+ KGE G++++ + P+R KIRA
Sbjct: 301 KSAWNDFD-YQYIAKKVAPTFKIPKGEHYVRLESGKGELGIFIVGNDDVFPWRWKIRAAD 359
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +LQ + + KG ++AD+ AILGS+DI+ G VDR
Sbjct: 360 FNNLQILPHILKGVKVADIMAILGSIDIIMGSVDR 394
>gi|81301634|ref|YP_398929.1| NADH dehydrogenase subunit 7 [Nicotiana tomentosiformis]
gi|122212869|sp|Q33BW6|NDHH_NICTO RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|80750993|dbj|BAE48069.1| NADH dehydrogenase 49kD subunit [Nicotiana tomentosiformis]
Length = 393
Score = 381 bits (979), Expect = e-103, Method: Composition-based stats.
Identities = 158/394 (40%), Positives = 221/394 (56%), Gaps = 5/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +
Sbjct: 5 TTRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRTIIQYL 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R DY+A M E E+L I++P R IRV+ E+ RI SHLL + D
Sbjct: 65 PYVTRWDYLATMFTEAITINGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA TP + F ERE + +E A+G RM +FR GGV D+P + +CD F +
Sbjct: 125 IGAQTPFFYIFRERELIYDLFEAATGMRMMHNFFRIGGVAADLPYGWINKCLDFCDYFLT 184
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ + L+T N +F +R +G + ++A WG SG M+R SG WDLRK YE Y E
Sbjct: 185 GVAEYQKLITRNPLFLERVEGVGIIGGDEALNWGLSGPMLRASGIEWDLRKVDHYESYDE 244
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
D+ + + GD RYLVR+ EM ES+KII+Q + + G ++ P+
Sbjct: 245 FDWQVQWQREGDSLARYLVRISEMTESIKIIQQALEGIPGGPYENLEIRRFDRLKDPEWN 304
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ S K + + + E+Y VEAPKGE G++LI D P+R KIR PG+
Sbjct: 305 AFEYRFIS-----KKPSPTFELSKQELYVRVEAPKGELGIFLIGDQSVFPWRWKIRPPGF 359
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 360 INLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|209524296|ref|ZP_03272846.1| NADH dehydrogenase (quinone) [Arthrospira maxima CS-328]
gi|209495387|gb|EDZ95692.1| NADH dehydrogenase (quinone) [Arthrospira maxima CS-328]
Length = 394
Score = 381 bits (979), Expect = e-103, Method: Composition-based stats.
Identities = 167/395 (42%), Positives = 226/395 (57%), Gaps = 6/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ IN GP HP+ HGVLRLI+ LDGE V +P IG LHRG EK+ E +T + V
Sbjct: 5 ETRTEPMVINMGPHHPSMHGVLRLIVTLDGEDVVDCEPVIGYLHRGMEKIAENRTNVMYV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R DY A M E A E L IE+P R Q IRV+ E+ RI +HLL + D
Sbjct: 65 PYVSRWDYAAGMFNEAVTVNAPEMLANIEVPKRAQYIRVIMLELNRIANHLLWLGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRM-HAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
+GA TP + F ERE + +E A+G RM + YFR GGV D+P V+ +CD F
Sbjct: 125 LGAQTPFFYIFREREMIYDLWEAATGYRMVNNNYFRIGGVAADLPYGWVDKCHDFCDYFL 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R +G + E A WG SG M+R SG WDLRK YECY
Sbjct: 185 PKVDEYEKLITNNPIFRRRIEGLGVITREQAINWGLSGPMLRASGVDWDLRKVDHYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+D+ GDC RY+VR+ EMRESVKI+RQ ++ L G +++ +
Sbjct: 245 DFDWDVHWETAGDCLARYVVRIREMRESVKILRQALDGLPGGPYEN---LEAQRMMGGPK 301
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
++ I K + +P GE Y VE+ KGE G+Y+I D P+R KIRA
Sbjct: 302 SEWNNFDYQFI--GKKIAPTFKIPSGEHYVRVESGKGELGIYIIGDDNVFPWRFKIRAAD 359
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +LQ L KG ++AD+ AILGS+DI+ G VDR
Sbjct: 360 FNNLQIFPDLVKGEKVADIVAILGSVDIIMGSVDR 394
>gi|284929687|ref|YP_003422209.1| NADH dehydrogenase subunit D [cyanobacterium UCYN-A]
gi|284810131|gb|ADB95828.1| NADH dehydrogenase subunit D [cyanobacterium UCYN-A]
Length = 394
Score = 381 bits (978), Expect = e-103, Method: Composition-based stats.
Identities = 167/395 (42%), Positives = 230/395 (58%), Gaps = 6/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ IN GP HP+ HGVLRLI+ LDGE V +P IG LHRG EK+ E +T + V
Sbjct: 5 ETRTEPMVINMGPHHPSMHGVLRLIVTLDGEDVVDCEPVIGYLHRGMEKIAENRTNIMYV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R DY A M E A EKL I++P R Q IRV+ E+ RI +HLL + D
Sbjct: 65 PYVSRWDYAAGMFNEAITVNAPEKLANIKVPKRAQYIRVIMLELNRIANHLLWLGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSR-MHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E ASG R ++ YFR GGV D+P ++ +C+ F
Sbjct: 125 VGATTPFFYIFREREMIYDLWEAASGMRLINNNYFRIGGVAVDLPYGWIDKCEDFCNHFK 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+ +++ L+T N IF++R IG + EDA WG SG M+RGSG WDLRK YECY
Sbjct: 185 TKVDEYEKLITNNPIFRRRIEGIGKIAREDAINWGLSGPMLRGSGVKWDLRKVDHYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+DI GDC RY VR+ EMRESVKI+ Q + + G GP + K + +
Sbjct: 245 DFDWDIQWETEGDCLARYFVRIKEMRESVKILSQALKGIPG----GPYENLEAKRMIEGK 300
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ + K + +P GE Y +E+ KGE G+++I + P+R KIRAP
Sbjct: 301 KSQWDDFD-YQYIAKKVAPTFKIPSGEHYVRLESGKGELGIFIIGNNDVFPWRWKIRAPD 359
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +LQ + L KG ++AD+ AILGS+D++ G VDR
Sbjct: 360 FNNLQILPHLLKGVKVADIMAILGSIDVIMGSVDR 394
>gi|262400771|gb|ACY66260.1| NADH dehydrogenase subunit 7 [Brassica napus]
Length = 393
Score = 381 bits (978), Expect = e-103, Method: Composition-based stats.
Identities = 162/390 (41%), Positives = 221/390 (56%), Gaps = 5/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E + +Q +PY
Sbjct: 9 DLMIVNMGPHHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRAIIQYLPYVT 68
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R DY+A M E E+L I++P R IRV+ E+ RI SHLL + D+GA
Sbjct: 69 RWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQ 128
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP + F ERE + +E A+G RM +FR GG+ D+P ++ +CD F + + +
Sbjct: 129 TPFFYIFREREFVYDLFEAATGMRMMHNFFRIGGIAADLPYGWIDKCLDFCDYFLTEVVE 188
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
L+T N IF +R +G + E+A WG SG M+R SG WDLRK YE Y E +++
Sbjct: 189 YQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIPWDLRKVDRYESYDEFEWE 248
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
I K GD RYLVR+ EM ES+KII+Q + L G S K P+ D +
Sbjct: 249 IQWQKQGDSLARYLVRLSEMTESIKIIQQALEGLPGGPYENLESRGFDKKRNPEWNDFEY 308
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
S K + + + E+Y VEAPKGE G++LI D P+R KIR PG+ +LQ
Sbjct: 309 RFIS-----KKPSPTFELSKQELYVRVEAPKGELGIFLIGDQSGFPWRWKIRPPGFINLQ 363
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 364 ILPELVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|156573695|gb|ABU85180.1| NADH-plastoquinone oxidoreductase subunit 7 [Anethum graveolens]
Length = 395
Score = 381 bits (978), Expect = e-103, Method: Composition-based stats.
Identities = 165/394 (41%), Positives = 225/394 (57%), Gaps = 5/394 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
++ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRNDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E+L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P V+ +CD F +
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPHGWVDKCLDFCDYFLTR 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YE Y E
Sbjct: 186 VTEYQRLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYESYDEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EM ES+KII+Q + + G GP + + +
Sbjct: 246 DWGVQWQKEGDSLARYLVRISEMTESIKIIQQALEGIPG----GPYENLEIRRFDKDKVW 301
Query: 304 MKRSME-SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ K + + + E+Y VEAPKGE G++LI D G P+R KIR PG+
Sbjct: 302 DPEWNDFDYRFISKKPSPTFELSKQELYVRVEAPKGELGIFLIGDKGVFPWRWKIRPPGF 361
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 362 INLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 395
>gi|254456948|ref|ZP_05070376.1| NADH dehydrogenase (quinone), D subunit [Campylobacterales
bacterium GD 1]
gi|207085740|gb|EDZ63024.1| NADH dehydrogenase (quinone), D subunit [Campylobacterales
bacterium GD 1]
Length = 413
Score = 381 bits (978), Expect = e-103, Method: Composition-based stats.
Identities = 170/396 (42%), Positives = 240/396 (60%), Gaps = 2/396 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +NFGPQHP+AHG LRL+L L E + + P IG LHRG EK+ E + + +
Sbjct: 18 DRDDNELILNFGPQHPSAHGQLRLMLHLQQEQIVKAHPDIGYLHRGMEKMAENMIYNEFM 77
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DR+DY+A + + +AL+VEKL+G+E+P R ++IR++ EI R++SHL + T A+D
Sbjct: 78 PTTDRMDYIASSSNNYGFALSVEKLIGLEVPRRAKVIRMMLLEINRLMSHLFWLATTALD 137
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA+T L+ F ERE LM E G+R+ A R GGV D+ + + + D P
Sbjct: 138 IGAMTVFLFAFREREYLMDIIEGYCGARLTHAAIRIGGVPLDVQDSFISQLKTFLDKLPQ 197
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ D DLL NRI+ R +GT+ E A WG +G M+R SG AWD+RK +PYE Y E
Sbjct: 198 NIKDYEDLLDTNRIWLMRMEEVGTISTEMALSWGCTGPMLRASGVAWDIRKEEPYELYDE 257
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVG--PVSASDPKIVPPK 300
++F++P GD + RY + M EMRE+ KI+ Q ++ K G + A PK V
Sbjct: 258 VEFNVPWSDKGDNFARYRIYMEEMRETAKILYQTIDMYQECVKNGETELMAHAPKYVSAP 317
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ D+ SL+ HF L T+G PVGEVY A E+PKGE G ++ S GG PYR K+RAP
Sbjct: 318 KLDIMTQNYSLMQHFVLVTQGMRPPVGEVYVATESPKGELGFFINSQGGPYPYRLKLRAP 377
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ H + L GH + DV +I+G+ +IVFGEVDR
Sbjct: 378 SFWHTGILTDLLPGHYIPDVVSIIGTTNIVFGEVDR 413
>gi|218246855|ref|YP_002372226.1| NAD(P)H-quinone oxidoreductase subunit H [Cyanothece sp. PCC 8801]
gi|257059897|ref|YP_003137785.1| NAD(P)H-quinone oxidoreductase subunit H [Cyanothece sp. PCC 8802]
gi|218167333|gb|ACK66070.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 8801]
gi|256590063|gb|ACV00950.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 8802]
Length = 394
Score = 381 bits (978), Expect = e-103, Method: Composition-based stats.
Identities = 169/395 (42%), Positives = 232/395 (58%), Gaps = 6/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +N GP HP+ HGVLRLI+ LDGE V +P IG LHRG EK+ E +T + V
Sbjct: 5 ETRTEPMVLNMGPHHPSMHGVLRLIVTLDGEDVVDCEPVIGYLHRGMEKIAENRTNVMYV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R DY A M E A EKL IE+P R Q IRV+ E+ RI +HLL + D
Sbjct: 65 PYVSRWDYAAGMFNEAITVNAPEKLADIEVPKRAQYIRVIMLELNRIANHLLWLGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSR-MHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E ASG R ++ YFR GGV D+P V+ +C+ F
Sbjct: 125 VGAQTPFFYIFREREMIYDLWEAASGMRLINNNYFRIGGVAVDLPYGWVDKCEDFCNHFD 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R IGT+ E+A WG SG M+RGSG WDLRK YECY
Sbjct: 185 PTVDEYEKLITNNPIFRRRVEGIGTITREEAINWGLSGPMLRGSGVKWDLRKVDHYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+++ GDC+ RYLVR+ EMRESVKIIRQ + L G GP + K + +
Sbjct: 245 DFDWEVQWETAGDCFARYLVRIREMRESVKIIRQALKGLPG----GPYENLEAKRMMEGK 300
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ + K + +P GE Y +E+ KGE G++++ + P+R KIRA
Sbjct: 301 KSQWNDFD-YQYIAKKVAPTFKIPKGEHYVRLESGKGEIGIFIVGNDDLFPWRWKIRAAD 359
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +LQ + L KG ++AD+ AILGS+DI+ G VDR
Sbjct: 360 FNNLQILPHLLKGVKVADIMAILGSIDIIMGSVDR 394
>gi|300864771|ref|ZP_07109622.1| NAD(P)H-quinone oxidoreductase subunit H [Oscillatoria sp. PCC
6506]
gi|300337240|emb|CBN54770.1| NAD(P)H-quinone oxidoreductase subunit H [Oscillatoria sp. PCC
6506]
Length = 394
Score = 381 bits (978), Expect = e-103, Method: Composition-based stats.
Identities = 166/397 (41%), Positives = 230/397 (57%), Gaps = 10/397 (2%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E++T + V
Sbjct: 5 ETRTEPMVLNMGPHHPSMHGVLRLIVTLDGEDVVDCEPVMGYLHRGMEKIAESRTNVMYV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R DY A M E A EKL I++P R IRV+ E+ RI +HLL + D
Sbjct: 65 PYVSRWDYAAGMFNEAVTVNAPEKLADIKVPKRASYIRVIMLELNRIANHLLWLGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRM-HAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + +RE ++ +E A+G RM + YFR GGV D+P V+ +CD F
Sbjct: 125 VGAQTPFFYTMRDREPILDLWEAATGYRMVNNNYFRIGGVAADLPYGWVDKCEDFCDYFW 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R +GT+ +A WG SG M+R SG WDLRK YECY
Sbjct: 185 PKVDEYERLITNNPIFRRRIEGLGTISRAEAINWGLSGPMLRASGVKWDLRKVDHYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+++ GDC RYLVR+ EMRESVKIIRQ + L G GP + K +
Sbjct: 245 DFDWEVQWESAGDCLARYLVRIREMRESVKIIRQALKGLPG----GPYENLEAKRLE--- 297
Query: 302 ADMKRSMESLIHHF--KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
K + + F K + +P GE Y VE+ KGE G+Y+I D P+R KIRA
Sbjct: 298 GGPKSEWNAFDYQFIGKKVAPTFKIPKGEHYVRVESGKGELGIYIIGDDNVFPWRWKIRA 357
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +LQ + + +G ++ADV AILGS+D++ G VDR
Sbjct: 358 ADFNNLQVLPHILRGVKVADVVAILGSIDVIMGSVDR 394
>gi|139389475|ref|YP_001123171.1| NADH dehydrogenase subunit 7 [Olimarabidopsis pumila]
gi|218527788|sp|A4QJY8|NDHH_OLIPU RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|134286369|dbj|BAF49996.1| NADH dehydrogenase 49KDa protein [Olimarabidopsis pumila]
Length = 393
Score = 380 bits (977), Expect = e-103, Method: Composition-based stats.
Identities = 163/390 (41%), Positives = 221/390 (56%), Gaps = 5/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E + +Q +PY
Sbjct: 9 DLMIVNMGPHHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRAIIQYLPYVT 68
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R DY+A M E E+L I++P R IRV+ E+ RI SHLL + D+GA
Sbjct: 69 RWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQ 128
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP + F ERE + +E A+G RM +FR GG+ D+P ++ +CD F + + +
Sbjct: 129 TPFFYIFREREFVYDLFEAATGMRMMHNFFRIGGIAADLPYGWIDKCLDFCDYFLTEVVE 188
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
L+T N IF +R +G + E+A WG SG M+R SG WDLRK YE Y E ++D
Sbjct: 189 YQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIPWDLRKVDRYESYDEFEWD 248
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
I K GD RYLVR+ EM ES+KII+Q + L G GP + + KR
Sbjct: 249 IQWQKQGDSLARYLVRLNEMTESIKIIQQALEGLPG----GPYENLESRGFDRKRNPEWN 304
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
E K + + + E+Y VEAPKGE G++LI D P+R KIR PG+ +LQ
Sbjct: 305 DFE-YRFISKKPSPTFELSKQELYVRVEAPKGELGIFLIGDQSGFPWRWKIRPPGFINLQ 363
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 364 ILPELVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|300723692|ref|YP_003712999.1| NADH dehydrogenase I subunit C, D [Xenorhabdus nematophila ATCC
19061]
gi|297630216|emb|CBJ90867.1| NADH dehydrogenase I chain C, D [Xenorhabdus nematophila ATCC
19061]
Length = 598
Score = 380 bits (977), Expect = e-103, Method: Composition-based stats.
Identities = 156/394 (39%), Positives = 227/394 (57%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +
Sbjct: 209 TDNEDFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 268
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GIE+P R + IRV+ SE+ RI SHLL ++T D
Sbjct: 269 PYTDRIEYLGGCVNEMPYVLAVEKLAGIEVPDRVKTIRVMLSELFRINSHLLYISTFIQD 328
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 329 VGAMTPVFFAFTDRQKVYDVVEAITGFRMHPAWFRIGGVAHDLPRGWDKLLRDLLDWLPK 388
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
LN N + K R+V + + A WG +G +R +G +D+RK +PY Y
Sbjct: 389 RLNSYVKAALKNSVLKGRSVGVAAYNAKQALDWGVTGAGLRATGIGFDVRKWRPYSGYEN 448
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DFD+PIG +GDCYDR ++++ E+R+S++I+ QC+ + GP A P PP R
Sbjct: 449 FDFDVPIGYNGDCYDRVMLKVEEIRQSMRILEQCLKNM----PEGPFKADHPLTTPPPRE 504
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ +E++I+HF + G +P E + +EA KG YL SDG YR +IR P +
Sbjct: 505 RTLQHIETMINHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSF 564
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 565 AHLQQIPSVIRGSLVSDLIVYLGSIDFVMSDVDR 598
>gi|139389321|ref|YP_001123086.1| NADH dehydrogenase 49KDa protein [Aethionema grandiflorum]
gi|218527812|sp|A4QJQ6|NDHH_AETGR RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|134286283|dbj|BAF49911.1| NADH dehydrogenase 49KDa protein [Aethionema grandiflorum]
Length = 397
Score = 380 bits (977), Expect = e-103, Method: Composition-based stats.
Identities = 160/395 (40%), Positives = 223/395 (56%), Gaps = 5/395 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
++ +N GP HP+ HGVLRLI+ LDGE V P +G LHRG EK+ E + +Q +P
Sbjct: 6 RRKDLMIVNIGPHHPSMHGVLRLIVTLDGEDVVDCQPILGYLHRGMEKIAENRAIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E E+L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM +FR GG+ D+P ++ +CD F +
Sbjct: 126 GAQTPFFYIFREREFVYDLFEAATGMRMMHNFFRIGGIAADLPYGWIDKCLDFCDYFLTE 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A W SG M+R SG WDLRK YECY E
Sbjct: 186 VVEYQKLITRNPIFLERVEGVGIIGGEEAINWSLSGPMLRASGIQWDLRKVDRYECYDEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+++I K GD RYLVR+ EM ES+KII+Q + L G K + ++
Sbjct: 246 EWEIQWQKQGDSLARYLVRLSEMTESIKIIQQALEGLPGGPYENLERRDFDKKLN---SE 302
Query: 304 MKRSMESLIHHF--KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
M + + F K + + + E+Y VEAPKGE G++LI D P+R KIR PG
Sbjct: 303 MNSEWNNFDYRFISKKPSPTFELSKQELYVRVEAPKGELGIFLIGDQSGVPWRWKIRPPG 362
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 363 FINLQILPELVKRMKLADIMTILGSIDIIMGEVDR 397
>gi|114107102|ref|YP_740258.1| NADH-plastoquinone oxidoreductase subunit 7 [Liriodendron
tulipifera]
gi|122227462|sp|Q0G9G3|NDHH_LIRTU RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|113201050|gb|ABI32565.1| NADH-plastoquinone oxidoreductase subunit 7 [Liriodendron
tulipifera]
Length = 393
Score = 380 bits (977), Expect = e-103, Method: Composition-based stats.
Identities = 165/392 (42%), Positives = 223/392 (56%), Gaps = 5/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +PY
Sbjct: 7 RKDFMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPVLGYLHRGMEKIAENRTIIQYLPY 66
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
R DY+A M E A E+L I++P R IRV+ E+ RI SHLL + D+G
Sbjct: 67 VTRWDYLATMFTEAITVNAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIG 126
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A TP + F ERE L +E A+G RM YFR GGV D+P ++ +CD + +
Sbjct: 127 AQTPFFYIFRERELLYDLFEAATGMRMMHNYFRIGGVAADLPHGWIDKCLDFCDYSLTGV 186
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY E D
Sbjct: 187 VEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKIDHYECYDEFD 246
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
+++ K GD RYLVR+ EM ES+KII+Q + + G GP + + R
Sbjct: 247 WEVQWQKEGDSLARYLVRISEMAESIKIIQQVLEGIPG----GPYENLEVRRFDKARDSE 302
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
E K + + + E+Y VEAPKGE G++LI D P+R KIR PG+ +
Sbjct: 303 WNDFE-YRFISKKPSPTFELSKQELYVRVEAPKGELGIFLIGDNSVFPWRWKIRPPGFIN 361
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 362 LQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|189162327|ref|YP_001936573.1| NADH dehydrogenase subunit 7 [Fagopyrum esculentum subsp.
ancestrale]
gi|218527772|sp|B2XWJ7|NDHH_FAGEA RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|166065413|gb|ABY79788.1| NADH dehydrogenase subunit 7 [Fagopyrum esculentum subsp.
ancestrale]
Length = 393
Score = 380 bits (977), Expect = e-103, Method: Composition-based stats.
Identities = 160/393 (40%), Positives = 224/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPVLGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E+L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITINAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM +FR GG+ D+P ++ +C+ F A
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNFFRIGGIAADLPYGWIDKCLDFCEYFLPA 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YE Y E
Sbjct: 186 IAEYQTLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKIDHYESYEEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+++ K GD RYL R+ EM ES+KII+Q + + G K+ P+ +
Sbjct: 246 DWEVQWQKEGDSLARYLTRIGEMAESIKIIQQALEGIPGGPYENLEIRRCNKVRDPEWNN 305
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ S K + + + E+Y VEAPKGE G++LI D P+R KIR PG+
Sbjct: 306 FEYRFIS-----KRPSPTFELSQQELYVRVEAPKGELGIFLIGDRSAFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GE+DR
Sbjct: 361 NLQILPQLVKRMKLADIMTILGSIDIIMGEIDR 393
>gi|332669452|ref|YP_004452460.1| NADH dehydrogenase I, D subunit [Cellulomonas fimi ATCC 484]
gi|332338490|gb|AEE45073.1| NADH dehydrogenase I, D subunit [Cellulomonas fimi ATCC 484]
Length = 447
Score = 380 bits (977), Expect = e-103, Method: Composition-based stats.
Identities = 176/408 (43%), Positives = 240/408 (58%), Gaps = 19/408 (4%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GPQHP+ HGVLRL+LE+DGE V IG LH G EK +E +T+ Q V +
Sbjct: 41 ERIVVNMGPQHPSTHGVLRLMLEIDGETVTEARAGIGYLHTGIEKNMEFRTWTQGVTFCT 100
Query: 67 RLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
R+DYVAP+ QE AY LAVEKLLGI ++P R +IRVL E+ RI SHL+ + T ++G
Sbjct: 101 RMDYVAPLFQEAAYCLAVEKLLGITDDVPERATVIRVLLMELNRIASHLVCLATGGNELG 160
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A T GF RE+++ +E +G RM+ A+ RPGGV QDIPP ++ I S
Sbjct: 161 ATTIMTVGFTAREEVLRIFELITGLRMNHAFIRPGGVAQDIPPGAIDTIREALTSMRHYF 220
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ DL+ N I K R +G + L G +G ++R +G +D+RK+ PY Y D
Sbjct: 221 RQLEDLMLANPILKLRLQGVGYLNLSGCMALGMTGPVLRSAGLPYDVRKADPYCGYETYD 280
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK---- 300
FD+P D + R ++RM E +S++I+ Q ++RL GPV D KI P
Sbjct: 281 FDVPTATEADSWSRVILRMEECYQSMRIVEQTLDRLQKLGP-GPVMVGDKKIAWPAQLAI 339
Query: 301 ------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG 348
+ M SME+LIHHFKL TEG+ VP G+V+ VE P+GE GV+L+SDG
Sbjct: 340 GSDGMGNSLDHIKEIMGTSMEALIHHFKLVTEGFRVPAGQVFQTVEHPRGELGVHLVSDG 399
Query: 349 GNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G +PYR R P + +LQA+ +C+G Q+ADV + SLD V G VDR
Sbjct: 400 GTRPYRAHFRDPSFNNLQAVSIMCEGGQVADVVVAVASLDPVLGGVDR 447
>gi|284053844|ref|ZP_06384054.1| NAD(P)H-quinone oxidoreductase subunit H [Arthrospira platensis
str. Paraca]
gi|291571685|dbj|BAI93957.1| NADH dehydrogenase subunit H [Arthrospira platensis NIES-39]
Length = 394
Score = 380 bits (977), Expect = e-103, Method: Composition-based stats.
Identities = 168/395 (42%), Positives = 227/395 (57%), Gaps = 6/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ IN GP HP+ HGVLRLI+ LDGE V +P IG LHRG EK+ E +T + V
Sbjct: 5 ETRTEPMVINMGPHHPSMHGVLRLIVTLDGEDVVDCEPVIGYLHRGMEKIAENRTNIMYV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R DY A M E A E L IE+P R Q IRV+ E+ RI +HLL + D
Sbjct: 65 PYVSRWDYAAGMFNEAVTVNAPEMLANIEVPKRAQYIRVIMLELNRIANHLLWLGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRM-HAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
+GA TP + F ERE + +E A+G RM + YFR GGV D+P V+ +CD F
Sbjct: 125 LGAQTPFFYIFREREMIYDLWEAATGYRMVNNNYFRIGGVAADLPYGWVDKCHDFCDYFL 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R +G + E A WG SG M+R SG WDLRK YECY
Sbjct: 185 PKVDEYEKLITNNPIFRRRIEGLGVITREQAINWGLSGPMLRASGVNWDLRKVDHYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+LD+D+ GDC RY+VR+ EMRESVKI+RQ ++ L G +++ +
Sbjct: 245 DLDWDVHWETDGDCLARYVVRIREMRESVKILRQALDGLPGGPYEN---LEAQRMMGGPK 301
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
++ I K + +P GE Y VE+ KGE G+Y+I D P+R KIRA
Sbjct: 302 SEWNNFDYQFI--GKKIAPTFKIPSGEHYVRVESGKGELGIYIIGDDNVFPWRFKIRAAD 359
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +LQ L KG ++AD+ AILGS+DI+ G VDR
Sbjct: 360 FNNLQIFPDLVKGEKVADIVAILGSVDIIMGSVDR 394
>gi|32480901|ref|NP_862811.1| NADH dehydrogenase subunit 7 [Calycanthus floridus var. glaucus]
gi|75297113|sp|Q7YJS8|NDHH_CALFG RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|32399437|emb|CAD28778.1| NADH dehydrogenase 49KDa subunit [Calycanthus floridus var.
glaucus]
Length = 393
Score = 380 bits (977), Expect = e-103, Method: Composition-based stats.
Identities = 163/393 (41%), Positives = 223/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPVLGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E+L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE L +E A+G RM YFR GGV D+P ++ +CD F +
Sbjct: 126 GAQTPFFYIFRERELLYDLFEAATGMRMMHNYFRIGGVAADLPHGWIDKCLDFCDYFLTG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY E
Sbjct: 186 VVEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYECYDEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EM ES+KI++Q + + G GP + + +
Sbjct: 246 DWQVQWQKEGDSLARYLVRISEMTESIKILQQALEGIPG----GPYENLEGRRFDRESDS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ K + + + E+Y VEAPKGE G++LI D P+R KIR PG+
Sbjct: 302 EWNDFD-YRFISKKPSPTFELSKQELYVRVEAPKGELGIFLIGDNSVFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPHLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|139389860|ref|YP_001123520.1| NADH dehydrogenase subunit 7 [Crucihimalaya wallichii]
gi|218527767|sp|A4QKZ0|NDHH_CRUWA RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|134286722|dbj|BAF50345.1| NADH dehydrogenase 49KDa protein [Crucihimalaya wallichii]
Length = 393
Score = 380 bits (976), Expect = e-103, Method: Composition-based stats.
Identities = 162/390 (41%), Positives = 221/390 (56%), Gaps = 5/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E + +Q +PY
Sbjct: 9 DLMIVNMGPHHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRAIIQYLPYVT 68
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R DY+A M E E+L I++P R IRV+ E+ RI SHLL + D+GA
Sbjct: 69 RWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQ 128
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP + F ERE + +E A+G RM +FR GG+ D+P ++ +CD F + + +
Sbjct: 129 TPFFYIFREREFIYDLFEAATGMRMMHNFFRIGGIAADLPYGWIDKCLDFCDYFLTEVVE 188
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
L+T N IF +R +G + E+A WG SG M+R SG WDLRK YE Y E +++
Sbjct: 189 YQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIPWDLRKVDRYESYDEFEWE 248
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
I K GD RYLVR+ EM ES+KII+Q + L G GP + + KR
Sbjct: 249 IQWQKQGDSLARYLVRLSEMTESIKIIQQALEGLPG----GPYENLESRGFERKRNPEWN 304
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
E K + + + E+Y VEAPKGE G++LI D P+R KIR PG+ +LQ
Sbjct: 305 DFE-YRFISKKPSPTFELSKQELYVRVEAPKGELGIFLIGDQSGFPWRWKIRPPGFINLQ 363
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 364 ILPELVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|115391959|ref|YP_778547.1| NADH dehydrogenase subunit 7 [Jasminum nudiflorum]
gi|122164923|sp|Q06R74|NDHH_JASNU RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|110456280|gb|ABG74685.1| NADH dehydrogenase 49 kDa subunit [Jasminum nudiflorum]
Length = 393
Score = 380 bits (976), Expect = e-103, Method: Composition-based stats.
Identities = 163/394 (41%), Positives = 222/394 (56%), Gaps = 5/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ IN GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T LQ +
Sbjct: 5 TTRKDLMIINMGPHHPSMHGVLRLIITLDGEDVIDCEPILGYLHRGMEKIAENRTILQYL 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R DY+A M E E+L I++P R IR + E+ RI SHLL + D
Sbjct: 65 PYVTRWDYLATMFTEAISVNGPEQLGNIQVPKRASYIRTIMLELSRIASHLLWLGPFMAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA TP + F ERE + +E A+G RM +FR GG+ D+P ++ +CD F
Sbjct: 125 IGAQTPFFYIFREREFIYDLFEAATGMRMMHNFFRIGGIAADLPHGWIDKCLDFCDYFLR 184
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY E
Sbjct: 185 GVVEYQKLITRNPIFLERVEGVGIIGAEEALNWGLSGPMLRASGIQWDLRKMDHYECYDE 244
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
D+++ K GD RYLVR+ EM ES+KII+Q + R+ G GP + + +
Sbjct: 245 FDWEVQWQKEGDSLARYLVRISEMTESIKIIQQALERIPG----GPFENLEIRRFDRIKD 300
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
E K + + + E+Y VEAPKGE G++LI D P+R KIR PG+
Sbjct: 301 TEWNDFE-YRFISKKPSPTFELSKQELYVRVEAPKGELGIFLIGDQSVFPWRWKIRPPGF 359
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 360 INLQILSQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|290475915|ref|YP_003468810.1| NADH dehydrogenase I subunit C, D [Xenorhabdus bovienii SS-2004]
gi|289175243|emb|CBJ82046.1| NADH dehydrogenase I chain C, D [Xenorhabdus bovienii SS-2004]
Length = 598
Score = 380 bits (976), Expect = e-103, Method: Composition-based stats.
Identities = 151/394 (38%), Positives = 228/394 (57%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP+AHG R++L+LDGE + P IG HRG EK+ E +++ +
Sbjct: 209 TESEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIIDCVPDIGYHHRGAEKMGERQSWHSYI 268
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI++P R + IRV+ SE+ RI SHLL ++T D
Sbjct: 269 PYTDRVEYLGGCVNEMPYVLAVEKLAGIDVPDRVKTIRVMLSELFRINSHLLYISTFIQD 328
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA++P + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 329 VGAMSPVFFAFTDRQKVYDVVEAITGFRMHPAWFRIGGVAHDLPRGWDKLLRELLDWMPK 388
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
LN N + K R+V + + + A WG +G +R +G +D+RK +PY Y
Sbjct: 389 RLNSYVKAALKNSVLKGRSVGVASYNSKQALDWGVTGAGLRATGIGFDVRKWRPYSGYEN 448
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF++P G +GDCYDR ++++ E+R+S++I+ QC+ + GP A P PP R
Sbjct: 449 FDFEVPTGYNGDCYDRVMLKVEEIRQSMRILEQCLKNM----PEGPFKADHPLTTPPPRE 504
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ +E++I+HF + G +P E + +EA KG YL SDG YR +IR P +
Sbjct: 505 RTLQHIETMINHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGNTMSYRTRIRTPSF 564
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 565 AHLQQIPSVIRGSLVSDLIVYLGSIDFVMSDVDR 598
>gi|292559561|ref|YP_003540989.1| NADH-plastoquinone oxidoreductase 49 kDa subunit [Phoenix
dactylifera]
gi|290790969|gb|ADD63224.1| NADH-plastoquinone oxidoreductase 49 kDa subunit [Phoenix
dactylifera]
gi|294620635|gb|ADF28204.1| NADH-plastoquinone oxidoreductase 49 kDa subunit [Phoenix
dactylifera]
Length = 393
Score = 380 bits (976), Expect = e-103, Method: Composition-based stats.
Identities = 164/396 (41%), Positives = 225/396 (56%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 IPATRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E A E+L +++P R IRV+ E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEAITVNAPEQLENVQVPQRASYIRVIMLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE L +E A+G RM YFR GGV D+P ++ +CD
Sbjct: 123 ADIGAQTPFFYIFRERELLYDLFEAATGMRMMHNYFRIGGVAADLPHGWIDKCLDFCDYS 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ + + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY
Sbjct: 183 LTGVVEYQKLITRNPIFLERVERVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+E D+++ K GD RYLVR+ EM ES+KII+Q + + G GP + +
Sbjct: 243 NEFDWEVQWQKEGDSLARYLVRIGEMGESIKIIQQALEGIPG----GPYENLEVRRFDRA 298
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ E K + + + E+Y VEAPKGE G+YLI D P+R KIR P
Sbjct: 299 KNSEWNDFE-YRFISKKPSPNFELSKQELYVRVEAPKGELGIYLIGDNSIFPWRWKIRPP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 358 GFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|301058553|ref|ZP_07199558.1| NADH dehydrogenase subunit D [delta proteobacterium NaphS2]
gi|300447285|gb|EFK11045.1| NADH dehydrogenase subunit D [delta proteobacterium NaphS2]
Length = 583
Score = 380 bits (976), Expect = e-103, Method: Composition-based stats.
Identities = 167/393 (42%), Positives = 234/393 (59%), Gaps = 5/393 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ +N GP H HGV+R +L+LDGE + V P IG HRG EK+ E +T+ +PY
Sbjct: 195 DNDYLFLNLGPHHTGTHGVIRFVLQLDGEEIRHVVPDIGFHHRGAEKMAERQTWHTYIPY 254
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY+ + AY LAVEKL GIE P R Q+IRV+ +E+ R+ SHL+ + T A D+G
Sbjct: 255 TDRIDYLGGVMNNFAYVLAVEKLAGIEAPPRAQVIRVMLAELFRLASHLVWLGTFASDIG 314
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++P + F +RE++ E +G RMH ++FR GGV D+P + + D P L
Sbjct: 315 AMSPVFFTFNDRERIFDIVEAITGGRMHPSFFRMGGVALDLPHGWDRLVRDFLDYLPKRL 374
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ ++T NRIFK R +G +A WG +G +R +G WD RK +PY Y + D
Sbjct: 375 REYDRVVTRNRIFKARTKGVGAYTTREAVEWGVTGAGLRATGLEWDFRKKRPYSGYEQFD 434
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDIP G HGDC+DR LVRM EMR+S++I+ QCV ++ G A P VPP +
Sbjct: 435 FDIPTGVHGDCFDRALVRMEEMRQSLRIVEQCVKQM----PEGSYKAEHPLTVPPVKDRA 490
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
+E+LIHHF G +P GE + +EA KG G YL+SDG YRC+IR P + H
Sbjct: 491 LHDIETLIHHFVNVAWGPVIPAGEAHQGIEATKGNNGYYLVSDGAGSAYRCRIRTPSFPH 550
Query: 365 LQAMEFLC-KGHQLADVSAILGSLDIVFGEVDR 396
LQ + + +G +AD AILG++D V ++DR
Sbjct: 551 LQMVPLISTRGAMVADFMAILGAVDFVLADIDR 583
>gi|11497587|ref|NP_054994.1| NADH dehydrogenase subunit 7 [Spinacia oleracea]
gi|18203250|sp|Q9M3I5|NDHH_SPIOL RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|7636168|emb|CAB88790.1| NADH dehydrogenase 49kD subunit [Spinacia oleracea]
Length = 393
Score = 380 bits (976), Expect = e-103, Method: Composition-based stats.
Identities = 165/396 (41%), Positives = 224/396 (56%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 VPTTRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPIVGYLHRGMEKIAENRTIIQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E E+L I++P R IRV+ E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 123 ADIGAQTPFFYILRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L + L+T N IF +R N+G + E+A WG SG M+R SG WDLRK YECY
Sbjct: 183 LIGLTEYQKLITRNPIFLERVENVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E D+++ K GD RYL+R+ EM ESVKII+Q + + G +I P+
Sbjct: 243 DEFDWEVQWQKEGDSLARYLIRIGEMAESVKIIQQALEGIPGGPYENLEIRRFNRIKYPE 302
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
D + S K + + + E+Y VEAPKGE G++LI D P+R KIR P
Sbjct: 303 WNDFEYRFIS-----KKPSPAFELSKQELYVRVEAPKGELGIFLIGDQSVFPWRWKIRPP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 358 GFINLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|309322201|ref|YP_003934116.1| NADH-plastoquinone oxidoreductase subunit 7 [Geranium palmatum]
gi|197131400|gb|ACH47218.1| NADH-plastoquinone oxidoreductase subunit 7 [Geranium palmatum]
gi|300069294|gb|ADJ66415.1| NADH-plastoquinone oxidoreductase subunit 7 [Geranium palmatum]
Length = 393
Score = 380 bits (976), Expect = e-103, Method: Composition-based stats.
Identities = 165/396 (41%), Positives = 228/396 (57%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + +N GP HP+ HGVLRLIL LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 IPTTRKDFMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E A EKL I++P R IR + E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEGITVNAPEKLGNIQVPKRANYIRTIMLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+G TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 123 ADIGTQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVATDLPYGWIDKCLDFCDYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ L + L+T N IF +R IG + E+A WG SG M+R SG WDLRK Y+CY
Sbjct: 183 LTGLAEYEKLITRNPIFLERVEGIGIIDKEEAINWGLSGPMLRASGIQWDLRKIDNYDCY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+E D+++ K GD R+LVR+ EMRES+K+I+Q + + G GP + + +
Sbjct: 243 NEFDWEVQWQKEGDSLARFLVRIGEMRESIKMIQQALEGIPG----GPYENLEIRCFDRE 298
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R E K + + +P E+Y VEAPKGE G+++I D + P+R KIR P
Sbjct: 299 RYTEWGGFE-YRFVSKKPSPTFELPKQELYMRVEAPKGELGIFMIGDQSSFPWRWKIRPP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 358 GFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|156598139|gb|ABU85334.1| NADH-plastoquinone oxidoreductase subunit 7 [Elaeis oleifera]
Length = 393
Score = 380 bits (976), Expect = e-103, Method: Composition-based stats.
Identities = 163/396 (41%), Positives = 225/396 (56%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 IPATRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E A E+L +++P R IRV+ E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEAITVNAPEQLENVQVPQRASYIRVIMLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE L +E A+G RM YFR GGV D+P ++ +C+
Sbjct: 123 ADIGAQTPFFYIFRERELLYDLFEAATGMRMMHNYFRIGGVAADLPHGWIDKCLDFCNYS 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ + + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY
Sbjct: 183 LTGVVEYQKLITRNPIFLERVERVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+E D+++ K GD RYLVR+ EM ES+KII+Q + + G GP + +
Sbjct: 243 NEFDWEVQWQKEGDSLARYLVRIGEMGESIKIIQQALEGIPG----GPYENLEVRRFDRA 298
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ E K + + + E+Y VEAPKGE G+YLI D P+R KIR P
Sbjct: 299 KNSEWNDFE-YRFISKKPSPNFELSKQELYVRVEAPKGELGIYLIGDNSIFPWRWKIRPP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 358 GFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|317492621|ref|ZP_07951048.1| NADH dehydrogenase [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316919371|gb|EFV40703.1| NADH dehydrogenase [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 603
Score = 380 bits (976), Expect = e-103, Method: Composition-based stats.
Identities = 153/394 (38%), Positives = 228/394 (57%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP++HG R++L+LDGE + P +G HRG EK+ E +++ +
Sbjct: 214 TENEDFMFLNLGPNHPSSHGAFRIVLQLDGEEIVDCVPDVGYHHRGAEKMGERQSWHSYI 273
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GIE+P R ++IRV+ SE+ RI SHLL ++T D
Sbjct: 274 PYTDRIEYLGGCVNEMPYVLAVEKLAGIEVPERVKVIRVMLSELFRINSHLLYISTFIQD 333
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 334 VGAMTPVFFAFTDRQKVYDVVEAITGFRMHPAWFRIGGVAHDLPRGWERLLRDFLDWMPK 393
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R+V + ++A WG +G +R +G +D+RK +PY Y
Sbjct: 394 RLDSYVKAALKNTILKGRSVGVAAYNAKEALDWGVTGAGLRATGIEFDVRKWRPYSGYEN 453
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF++P+G +GDCYDR ++++ E+R+S++I+ QC + GP A P PP +
Sbjct: 454 FDFEVPVGHNGDCYDRVMLKVEELRQSLRILEQCYKNM----PEGPFKADHPLTTPPPKE 509
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ +E+LI HF + G +P E + VEA KG YL SDG YR +IR P Y
Sbjct: 510 RTLQHIETLITHFLQVSWGPVMPANESFQMVEATKGINSYYLTSDGSTMSYRTRIRTPSY 569
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 570 AHLQQIPAVIRGSLVSDLIVYLGSIDFVMSDVDR 603
>gi|322378679|ref|ZP_08053112.1| NADH-ubiquinone oxidoreductase, NQO4 subunit (NuoD) [Helicobacter
suis HS1]
gi|322380174|ref|ZP_08054409.1| NADH dehydrogenase subunit D [Helicobacter suis HS5]
gi|321147389|gb|EFX42054.1| NADH dehydrogenase subunit D [Helicobacter suis HS5]
gi|321148896|gb|EFX43363.1| NADH-ubiquinone oxidoreductase, NQO4 subunit (NuoD) [Helicobacter
suis HS1]
Length = 409
Score = 380 bits (976), Expect = e-103, Method: Composition-based stats.
Identities = 169/394 (42%), Positives = 244/394 (61%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++ INFGPQHP++HG LRLILELDGE + + P IG LHRG EKL E T+ + +
Sbjct: 18 ERDDNQMVINFGPQHPSSHGQLRLILELDGEKIIKATPEIGYLHRGCEKLGENMTYNEYM 77
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DRLDY + + +AYA AVE LLG++IP R Q+IR L E+ R++SH+ ++ A+D
Sbjct: 78 PTTDRLDYTSSTSNNYAYAHAVETLLGVQIPRRAQVIRTLLLELNRVISHIFFLSVHALD 137
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA++ L+ F+ RE + E G+R+ R GGV D+ P +E + + +
Sbjct: 138 VGAMSVFLYCFKTREYGLDLMEDYCGARLTHNAIRIGGVPLDLAPNWLESLKAFIKEVRA 197
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
I LL NRI++ R N+GT+ E A WG SG+M+RG+G A+D+RK +PYE Y E
Sbjct: 198 THKLIGGLLDSNRIWRARLENVGTITQEQAKSWGASGIMLRGTGIAYDVRKEEPYELYPE 257
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LDFDIP+G +GD YDRY + M+E+ +S++I+ Q + + + A +P +
Sbjct: 258 LDFDIPVGNNGDSYDRYQLYMLEIEQSLRILEQLI--PMHAPTDKVIMAHNPHYFSAPKE 315
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
D+ +L+ HF L T+G P GEVYA E+PKGE G ++ S+G PYR KIRAP +
Sbjct: 316 DIMTQNYALMQHFVLVTQGMRPPKGEVYAPTESPKGELGFFIHSEGDPYPYRLKIRAPSF 375
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H+ +++ + G LAD ++GS + VFGEVDR
Sbjct: 376 YHIGSLQDILIGQYLADAVTVIGSSNAVFGEVDR 409
>gi|304311497|ref|YP_003811095.1| NADH dehydrogenase I, chain CD [gamma proteobacterium HdN1]
gi|301797230|emb|CBL45450.1| NADH dehydrogenase I, chain CD [gamma proteobacterium HdN1]
Length = 600
Score = 380 bits (976), Expect = e-103, Method: Composition-based stats.
Identities = 158/394 (40%), Positives = 224/394 (56%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP+AHG R++L+LDGE + P IG HRG EK+ E +++ +
Sbjct: 211 RADEDFMFLNLGPNHPSAHGAFRIVLQLDGEEILDCVPEIGYHHRGAEKMAERQSWHSYI 270
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR+DY+ + Y LAVEKL GIE+P R + IRV+ +E RI SHLL + T +D
Sbjct: 271 PYTDRIDYLGGVMNNLPYVLAVEKLAGIEVPDRVKTIRVMMAEFFRISSHLLFLGTYIID 330
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K E +G RMH A++R GGV D+P + + D P
Sbjct: 331 VGAMTPIFYMFTDRQKAYDVIEAVTGFRMHPAWYRIGGVAHDLPNGWDRLVRDFLDWMPK 390
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L N I + R + + E+A WG +G +R +G AWDLRK +PY Y
Sbjct: 391 RLASYEKAALKNGILRSRTIGVAQYNTEEALAWGTTGPGLRATGLAWDLRKVRPYSGYEN 450
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+FD+P+ +GD YDR LVR+ E+R+S++IIRQC++ + GP A P PP +
Sbjct: 451 FEFDVPVRDNGDAYDRCLVRIEEIRQSLRIIRQCLDNMPA----GPYKADHPLTCPPPKE 506
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ +E+LI HF T G +P GE +EA KG YL SD YR +IR P +
Sbjct: 507 RTLKDIETLITHFLGVTWGPVMPEGEALQMIEATKGVNSYYLFSDRSTMSYRTRIRTPSF 566
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ + + +G +AD+ A L S+D V +VDR
Sbjct: 567 AHLQQIPSVIRGSMIADMIAYLASIDFVMADVDR 600
>gi|323149138|ref|YP_004222702.1| NADH-plastoquinone oxidoreductase subunit 7 [Anthriscus cerefolium]
gi|289645631|gb|ADD13694.1| NADH-plastoquinone oxidoreductase subunit 7 [Anthriscus cerefolium]
Length = 393
Score = 380 bits (976), Expect = e-103, Method: Composition-based stats.
Identities = 167/392 (42%), Positives = 225/392 (57%), Gaps = 5/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +PY
Sbjct: 7 RNDLMIVNIGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPY 66
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
R DY+A M E A E+L I++P R IRV+ E+ RI SHLL + D+G
Sbjct: 67 VTRWDYLATMFTEAITVNAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIG 126
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F + +
Sbjct: 127 AQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPHGWIDKCLDFCDYFLTRV 186
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ L+T N IF +R +G + E+A WG SG M+R SG WDLRK YE Y E D
Sbjct: 187 TEYQRLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYESYDEFD 246
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
+ + K GD RYLVR+ EM ESVKII+Q + + G K+ P+ D
Sbjct: 247 WGVQWQKEGDSLARYLVRISEMTESVKIIQQALEGIPGGPYENLEIRRFDKVWDPEWNDF 306
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
S K + + + E+Y VEAPKGE G++LI D G P+R KIR PG+ +
Sbjct: 307 DYRFIS-----KKPSPTFELSKQELYVRVEAPKGELGIFLIGDKGVFPWRWKIRPPGFIN 361
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 362 LQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|139388152|ref|YP_001123343.1| NADH dehydrogenase 49KDa protein [Barbarea verna]
gi|218527816|sp|A4QKG3|NDHH_BARVE RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|134286543|dbj|BAF50168.1| NADH dehydrogenase 49KDa protein [Barbarea verna]
Length = 393
Score = 380 bits (975), Expect = e-103, Method: Composition-based stats.
Identities = 163/390 (41%), Positives = 221/390 (56%), Gaps = 5/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E + +Q +PY
Sbjct: 9 DLMIVNMGPHHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRAIIQYLPYVT 68
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R DY+A M E E+L I++P R IRV+ E+ RI SHLL + D+GA
Sbjct: 69 RWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQ 128
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP + F ERE + +E A+G RM +FR GG+ D+P ++ +CD F + + +
Sbjct: 129 TPFFYIFREREFVYDLFEAATGMRMMHNFFRIGGIAADLPYGWIDKCLDFCDYFLTEVVE 188
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
L+T N IF +R +G V E+A WG SG M+R SG WDLRK YE Y E +++
Sbjct: 189 YQKLITRNPIFLERVEGVGIVGGEEAINWGLSGPMLRASGIPWDLRKVDRYESYDEFEWE 248
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
I K GD RYLVR+ EM ES+KII+Q + L G GP + + KR
Sbjct: 249 IQWQKQGDSLARYLVRLSEMTESIKIIQQALEGLPG----GPYENLESRGFDRKRNPEWN 304
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
E K + + + E+Y VEAPKGE G++LI D P+R KIR PG+ +LQ
Sbjct: 305 DFE-YRFISKKPSPTFELSKQELYVRVEAPKGELGIFLIGDQSGFPWRWKIRPPGFINLQ 363
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 364 ILPELVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|16330531|ref|NP_441259.1| NAD(P)H-quinone oxidoreductase subunit H [Synechocystis sp. PCC
6803]
gi|128837|sp|P27724|NDHH_SYNY3 RecName: Full=NAD(P)H-quinone oxidoreductase subunit H; AltName:
Full=NAD(P)H dehydrogenase subunit H; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H;
AltName: Full=NDH-1 subunit H; Short=NDH-H
gi|48042|emb|CAA43057.1| NDH-H [Synechocystis sp. PCC 6803]
gi|1653022|dbj|BAA17939.1| NADH dehydrogenase subunit 7 [Synechocystis sp. PCC 6803]
Length = 394
Score = 380 bits (975), Expect = e-103, Method: Composition-based stats.
Identities = 168/395 (42%), Positives = 231/395 (58%), Gaps = 6/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +N GP HP+ HGVLRLI+ LDGE V +P IG LHRG EK+ E++T + V
Sbjct: 5 ETRTEPMVLNMGPHHPSMHGVLRLIVTLDGEDVVDCEPVIGYLHRGMEKIAESRTNIMYV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R DY A M E A EKL IE+P R Q IRV+ E+ RI +HLL + D
Sbjct: 65 PYVSRWDYAAGMFNEAITVNAPEKLADIEVPKRAQYIRVIMLELNRIANHLLWLGPFMAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSR-MHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E ASG R ++ YFR GGV D+P + +CD F
Sbjct: 125 VGAQTPFFYIFREREMIYDLWEAASGMRLINNNYFRVGGVAVDLPYGWNDKCEDFCDYFL 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R +GTV E+A WG SG M+RGSG WDLRK YECY
Sbjct: 185 PKVDEYEKLITNNPIFRRRVEGVGTVTREEAINWGLSGPMLRGSGVKWDLRKVDHYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
ELD+++ GDC+ RYLVR+ EMRESVKIIRQ + + G GP + K + +
Sbjct: 245 ELDWEVQYETAGDCFARYLVRIREMRESVKIIRQALKAMPG----GPYENLEAKRLQEGK 300
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ K + +P GE Y +E+ KGE G+++ + P+R KIR+
Sbjct: 301 KSEWNDF-QYQYIAKKVAPTFKIPAGEHYVRLESGKGELGIFIQGNDDVFPWRWKIRSAD 359
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +LQ + + KG ++AD+ AILGS+DI+ G VDR
Sbjct: 360 FNNLQILPHILKGVKVADIMAILGSIDIIMGSVDR 394
>gi|206942070|gb|ACI22633.1| NADH-plastoquinone oxidoreductase subunit 7 [Aneura pinguis]
Length = 392
Score = 380 bits (975), Expect = e-103, Method: Composition-based stats.
Identities = 163/392 (41%), Positives = 227/392 (57%), Gaps = 5/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ +S +N GP HP+ HGVLRLI+ LDGE + +P +G LHRG EK+ E +T +Q +PY
Sbjct: 6 EKQSMIVNMGPHHPSMHGVLRLIIALDGENISDCEPILGYLHRGMEKIAENRTVVQYLPY 65
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
R DY+A M E A EKL I++P R + IRV+ E+ RI SHLL + D+G
Sbjct: 66 VTRWDYLATMFTEAITVNAPEKLTNIQVPRRARYIRVIMLELSRIASHLLWLGPFMADIG 125
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A TP + F ERE + +E A+G RM FR GGV D+P ++ +CD F +
Sbjct: 126 AQTPFFYIFREREMVYDLFEAATGMRMMHNSFRVGGVAVDLPYGWIDKCLDFCDYFLPKI 185
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
++ L+T N IF +R IG ++ +A G SG M+R SG WDLRK YECY ELD
Sbjct: 186 SEYERLITNNPIFLKRVEGIGIIEKNEAINRGLSGPMLRASGIRWDLRKIDHYECYDELD 245
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
+ I + GD RYLVR+ EMRESV++I+Q + + G GP + + + ++
Sbjct: 246 WQIQWQREGDSLARYLVRIGEMRESVRMIQQALKAIPG----GPYENLEARRLNKEKNSE 301
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
S E K + +P E Y +EAPKGE G++ I D P+R KIR PG+ +
Sbjct: 302 WNSFE-YQFIGKKPSPTLKLPKQEHYIRIEAPKGELGIFSIGDDSVFPWRLKIRPPGFIN 360
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
LQ + L +G +LAD+ I GS+DI+ GEVDR
Sbjct: 361 LQILPQLVRGTKLADIMTISGSIDIIMGEVDR 392
>gi|93005405|ref|YP_579842.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Psychrobacter cryohalolentis K5]
gi|122415841|sp|Q1QD95|NUOCD_PSYCK RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|92393083|gb|ABE74358.1| NADH dehydrogenase I, D subunit [Psychrobacter cryohalolentis K5]
Length = 591
Score = 380 bits (975), Expect = e-103, Method: Composition-based stats.
Identities = 154/393 (39%), Positives = 219/393 (55%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+AHG RL+L+LDGE V P IG HRG EK+ E +T+ +P
Sbjct: 203 RDEDFMFLNIGPNHPSAHGAFRLVLQLDGEEVVDCIPDIGYHHRGAEKMAERQTWHSFIP 262
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ + E Y ++VEKL GI IP R + IRV+ SE RI ++LL V T D
Sbjct: 263 YTDRIDYLGGVMNELPYIMSVEKLAGITIPPRAETIRVMMSEFFRITNNLLFVGTFIQDA 322
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP + F +R+K E +G RMH A+FR GG D+P + + D P
Sbjct: 323 GGMTPVFYMFTDRQKAYDVIEAVTGYRMHPAWFRIGGTAHDLPRGWQRLVREFLDWMPKR 382
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L++ N + K R + + A WG +G +R +G +DLRK++PY Y
Sbjct: 383 LDEYVKAALQNSVLKGRTQGVAQYNTKQALAWGVTGAGLRATGLDFDLRKARPYMGYENY 442
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DF++P+G +GD YDR +V++ EMR+S++IIRQC++ + GP A P VPP +
Sbjct: 443 DFEVPVGYNGDAYDRCMVKVEEMRQSLRIIRQCMDNM----PQGPYKADHPLAVPPPKDR 498
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+E+LI+HF + G +P GE VEA KG Y+ SD YR +IR P +A
Sbjct: 499 TLNDIETLINHFISVSWGPVMPAGECTTIVEATKGLNSYYITSDKATMSYRTRIRTPTFA 558
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ M + G ++D L S+DIV + DR
Sbjct: 559 HLQQMPSVINGSLVSDAIMYLASIDIVMADCDR 591
>gi|126022803|ref|YP_319819.2| NADH dehydrogenase subunit 7 [Acorus calamus]
gi|161622365|ref|YP_001586237.1| NADH dehydrogenase subunit 7 [Acorus americanus]
gi|218527810|sp|A9LYF6|NDHH_ACOAM RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|218527834|sp|Q3V4X8|NDHH_ACOCL RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|156573629|gb|ABU85149.1| NADH-plastoquinone oxidoreductase subunit 7 [Acorus americanus]
gi|160369908|gb|ABX38799.1| NADH-plastoquinone oxidoreductase subunit 7 [Acorus americanus]
Length = 393
Score = 380 bits (975), Expect = e-103, Method: Composition-based stats.
Identities = 164/393 (41%), Positives = 225/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRQDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E E+L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNGPEQLGNIQIPKRASYIRVIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F +
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLTG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY+E
Sbjct: 186 IVEYEKLITQNPIFLERVERVGIISGEEAINWGLSGPMLRASGIEWDLRKVDNYECYNEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+++ K GD RYLVR+ EM+ES+KII+Q + + G GP + + +
Sbjct: 246 DWEVQWQKEGDSLARYLVRISEMKESIKIIQQALEGIPG----GPYENLEVRRFDKVKDS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G++LI D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFISKKPSPTFELAKQELYVRVEAPKGELGIFLIGDNSVFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|139387311|ref|YP_001123431.1| NADH dehydrogenase subunit 7 [Capsella bursa-pastoris]
gi|139389154|ref|YP_001123871.1| NADH dehydrogenase subunit 7 [Nasturtium officinale]
gi|218527782|sp|A4QLZ1|NDHH_NASOF RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|218527819|sp|A4QKQ1|NDHH_CAPBU RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|134286632|dbj|BAF50256.1| NADH dehydrogenase 49KDa protein [Capsella bursa-pastoris]
gi|134287077|dbj|BAF50696.1| NADH dehydrogenase 49KDa protein [Nasturtium officinale]
Length = 393
Score = 380 bits (975), Expect = e-103, Method: Composition-based stats.
Identities = 162/390 (41%), Positives = 221/390 (56%), Gaps = 5/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E + +Q +PY
Sbjct: 9 DLMIVNMGPHHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRAIIQYLPYVT 68
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R DY+A M E E+L I++P R IRV+ E+ RI SHLL + D+GA
Sbjct: 69 RWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQ 128
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP + F ERE + +E A+G RM +FR GG+ D+P ++ +CD F + + +
Sbjct: 129 TPFFYIFREREFVYDLFEAATGMRMMHNFFRIGGIAADLPYGWIDKCLDFCDYFLTEVVE 188
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
L+T N IF +R +G + E+A WG SG M+R SG WDLRK YE Y E +++
Sbjct: 189 YQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIPWDLRKVDRYESYDEFEWE 248
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
I K GD RYLVR+ EM ES+KII+Q + L G GP + + KR
Sbjct: 249 IQWQKQGDSLARYLVRLSEMTESIKIIQQALEGLPG----GPYENLESRGFDRKRNPEWN 304
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
E K + + + E+Y VEAPKGE G++LI D P+R KIR PG+ +LQ
Sbjct: 305 DFE-YRFISKKPSPTFELSKQELYVRVEAPKGELGIFLIGDQSGFPWRWKIRPPGFINLQ 363
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 364 ILPELVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|139388969|ref|YP_001123695.1| NADH dehydrogenase subunit 7 [Lepidium virginicum]
gi|218527778|sp|A4QLG5|NDHH_LEPVR RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|134286899|dbj|BAF50520.1| NADH dehydrogenase 49KDa protein [Lepidium virginicum]
Length = 393
Score = 380 bits (975), Expect = e-103, Method: Composition-based stats.
Identities = 162/390 (41%), Positives = 221/390 (56%), Gaps = 5/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E + +Q +PY
Sbjct: 9 DLMIVNMGPHHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRAIIQYLPYVT 68
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R DY+A M E E+L I++P R IRV+ E+ RI SHLL + D+GA
Sbjct: 69 RWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQ 128
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP + F ERE + +E A+G RM +FR GG+ D+P ++ +CD F + + +
Sbjct: 129 TPFFYIFREREFVYDLFEAATGMRMMHNFFRIGGIAADLPYGWIDKCLDFCDYFLTEVVE 188
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
L+T N IF +R +G + E+A WG SG M+R SG WDLRK YE Y E +++
Sbjct: 189 YQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIPWDLRKVDRYESYDEFEWE 248
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
I K GD RYLVR+ EM ES+KII+Q + L G S S + P+ D
Sbjct: 249 IQWQKQGDSLARYLVRLSEMTESIKIIQQALEGLPGGPYENLESRSFDRKRNPEWNDFDY 308
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
S K + + + E+Y VEAPKGE G++LI D P+R KIR PG+ +LQ
Sbjct: 309 RFIS-----KKPSPTFELSKQELYVRVEAPKGELGIFLIGDQSGFPWRWKIRPPGFINLQ 363
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 364 ILPELVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|197285618|ref|YP_002151490.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Proteus
mirabilis HI4320]
gi|227356121|ref|ZP_03840511.1| NADH-quinone oxidoreductase chain C/D [Proteus mirabilis ATCC
29906]
gi|218528051|sp|B4EZC8|NUOCD_PROMH RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|194683105|emb|CAR43664.1| NADH-quinone oxidoreductase chain C/D [Proteus mirabilis HI4320]
gi|227163766|gb|EEI48678.1| NADH-quinone oxidoreductase chain C/D [Proteus mirabilis ATCC
29906]
Length = 598
Score = 380 bits (975), Expect = e-103, Method: Composition-based stats.
Identities = 150/394 (38%), Positives = 228/394 (57%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP++HG R+IL+LDGE + P +G HRG EK+ E +++ +
Sbjct: 209 TENEDFMFLNLGPNHPSSHGAFRIILQLDGEEIVNCVPDVGYHHRGAEKMGERQSWHSYI 268
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GIE+P R ++IRV+ SE+ RI SHLL ++T D
Sbjct: 269 PYTDRIEYLGGCVNEMPYVLAVEKLAGIEVPERVKVIRVMLSELFRINSHLLYISTFIQD 328
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 329 VGAMTPVFFAFTDRQKVYDIVEAITGFRMHPAWFRIGGVAHDLPKGWERLLREFLDWMPK 388
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R + + + ++A WG +G +R +G +D+RK +PY Y
Sbjct: 389 RLDSYVKAALQNSILKGRTIGVASYNAKEALDWGVTGAGLRATGVEFDVRKWRPYSGYEN 448
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+F+IP+ +GDCYDR ++++ E+R+S++I+ QC + GP A P PP +
Sbjct: 449 FEFEIPVASNGDCYDRVMLKVEELRQSLRILEQCYKNMPA----GPFKADHPLTTPPPKE 504
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ +E++I+HF + G +P E + VEA KG YL SDG YR +IR P +
Sbjct: 505 RTLQHIETMINHFLQVSWGPVMPANESFQMVEATKGINSYYLTSDGSTMSYRTRIRTPSF 564
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 565 AHLQQIPAVIRGSLVSDLIVYLGSIDFVMSDVDR 598
>gi|139390211|ref|YP_001123783.1| NADH dehydrogenase subunit 7 [Lobularia maritima]
gi|218527779|sp|A4QLQ3|NDHH_LOBMA RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|134286988|dbj|BAF50608.1| NADH dehydrogenase 49KDa protein [Lobularia maritima]
Length = 393
Score = 380 bits (975), Expect = e-103, Method: Composition-based stats.
Identities = 161/390 (41%), Positives = 221/390 (56%), Gaps = 5/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E + +Q +PY
Sbjct: 9 DLMIVNMGPHHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRAIIQYLPYVT 68
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R DY+A M E E+L I++P R IRV+ E+ RI SHLL + D+GA
Sbjct: 69 RWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQ 128
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP + F ERE + +E A+G RM +FR GG+ D+P ++ +CD F + + +
Sbjct: 129 TPFFYIFREREFVYDLFEAATGMRMMHNFFRIGGIAADLPYGWIDKCLDFCDYFLTEVVE 188
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
L+T N IF +R +G + E+A WG SG M+R SG WDLRK YE Y E +++
Sbjct: 189 YQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIPWDLRKVDRYESYDEFEWE 248
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
I K GD RYLVR+ EM ES+KII+Q + L G S + P+ D +
Sbjct: 249 IQWQKQGDSLARYLVRLSEMTESIKIIQQALEGLPGGPYENLESRGFDRKRNPEWNDFEY 308
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
S K + + + E+Y VEAPKGE G++LI D P+R KIR PG+ +LQ
Sbjct: 309 RFIS-----KKPSPTFELSKQELYVRVEAPKGELGIFLIGDQSGFPWRWKIRPPGFINLQ 363
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 364 ILPELVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|256831782|ref|YP_003160509.1| NADH dehydrogenase I, D subunit [Jonesia denitrificans DSM 20603]
gi|256685313|gb|ACV08206.1| NADH dehydrogenase I, D subunit [Jonesia denitrificans DSM 20603]
Length = 446
Score = 380 bits (975), Expect = e-103, Method: Composition-based stats.
Identities = 179/412 (43%), Positives = 243/412 (58%), Gaps = 17/412 (4%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + +N GPQHP+ HGVLRL+LE+DGE V +G LH G EK +E +TF Q
Sbjct: 36 IRELGEERIVVNMGPQHPSTHGVLRLMLEMDGEYVTEARAGVGYLHTGIEKNMEYRTFTQ 95
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
V + R+DY+A QE AY LAVE+LLGIE P R Q+IRV+ E+ RI SH + + T
Sbjct: 96 GVTFCTRMDYLASFFQEVAYCLAVERLLGIEAPERAQIIRVILMELNRISSHFVCLGTGG 155
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
++GA T F RE+++ +E ASG RM+ A+ RPGGV QD+P V+++
Sbjct: 156 NELGATTVMTAAFTGREEILRIFESASGLRMNNAFIRPGGVAQDVPAGFVDEVRSRLPKI 215
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L D++DL GN IFK R V +G + L A G +G ++R +G +D RK++PY Y
Sbjct: 216 EKYLTDLADLCLGNPIFKLRTVGVGHLNLAGAMALGITGPILRSAGLPYDARKAKPYCGY 275
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
DFDIP+ D Y R ++R E +S++IIRQ ++RL PV D KI P
Sbjct: 276 ETYDFDIPVSNDADSYARVVLRAEECWQSLRIIRQALDRLDNTAGA-PVMVEDKKIAWPA 334
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
R M SME+LIHHFKL TEG+ VP G+V+ VE P+GE GV+L
Sbjct: 335 QLAISSDGQGNSFEHIRKIMGSSMEALIHHFKLVTEGFRVPAGQVWQTVEHPRGELGVHL 394
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +PYR R P + +LQA +C+G Q+ADV + S+D V G VDR
Sbjct: 395 VSDGGTRPYRAHFRDPSFNNLQATSIMCEGGQVADVVVAVASIDPVMGGVDR 446
>gi|148243356|ref|YP_001228513.1| NAD(P)H-quinone oxidoreductase subunit H [Synechococcus sp. RCC307]
gi|229891155|sp|A5GWA1|NDHH_SYNR3 RecName: Full=NAD(P)H-quinone oxidoreductase subunit H; AltName:
Full=NAD(P)H dehydrogenase subunit H; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H;
AltName: Full=NDH-1 subunit H; Short=NDH-H
gi|147851666|emb|CAK29160.1| NAD(P)H-quinone oxidoreductase chain H [Synechococcus sp. RCC307]
Length = 394
Score = 380 bits (975), Expect = e-103, Method: Composition-based stats.
Identities = 160/395 (40%), Positives = 230/395 (58%), Gaps = 6/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +NFGP HP+ HGVLRL++ LDGE V +P IG LHRG EK+ E +T + V
Sbjct: 5 ETRTEPMVLNFGPHHPSMHGVLRLVVTLDGEDVVDCEPVIGYLHRGMEKIAENRTNVMFV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R DY A M E A E+L +++P R IRV+ E+ RI +HLL + D
Sbjct: 65 PYVSRWDYAAGMFNEAITVNAPERLADVKVPRRASYIRVMMLELNRIANHLLWLGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRM-HAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E A+G RM + YFR GGV D+P +E + +C+ F
Sbjct: 125 VGAQTPFFYIFREREMIYDLWEAATGQRMVNNNYFRIGGVAADLPYGWLEKLDDFCNWFG 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R +GT+ E A W SG M+R SG AWDLRK YECY
Sbjct: 185 PKIDEYEKLITNNPIFRRRIEGLGTITREQAINWSLSGPMLRASGVAWDLRKVDHYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+++ + G C+ RY VR+ EMRES+KI+RQ ++ G GP + K +
Sbjct: 245 DFDWEVATAQEGCCFARYRVRLQEMRESLKILRQAAQQIPG----GPTENLEAKRQLEGK 300
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ I K + +P G++Y VE+ KGE GV+L+ + P+R KIRA
Sbjct: 301 DSEFYGFDYQI-VAKKVAPTFKIPNGQLYTRVESGKGELGVFLMGNNDVTPWRWKIRAAD 359
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +LQ + L KG ++AD+ AILGS+D++ G VDR
Sbjct: 360 FNNLQILPHLLKGVKVADIMAILGSIDVIMGSVDR 394
>gi|7525091|ref|NP_051115.1| NADH dehydrogenase subunit 7 [Arabidopsis thaliana]
gi|6685679|sp|P56753|NDHH_ARATH RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|5881752|dbj|BAA84443.1| NADH dehydrogenase 49KDa protein [Arabidopsis thaliana]
Length = 393
Score = 380 bits (975), Expect = e-103, Method: Composition-based stats.
Identities = 161/390 (41%), Positives = 221/390 (56%), Gaps = 5/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E + +Q +PY
Sbjct: 9 DLMIVNMGPHHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRAIIQYLPYVT 68
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R DY+A M E E+L I++P R IRV+ E+ RI SHLL + D+GA
Sbjct: 69 RWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQ 128
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP + F ERE + +E A+G RM +FR GG+ D+P ++ +CD F + + +
Sbjct: 129 TPFFYIFREREFVYDLFEAATGMRMMHNFFRIGGIAADLPYGWIDKCLDFCDYFLTEVVE 188
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
L+T N IF +R +G + E+A WG SG M+R SG WDLRK YE Y E +++
Sbjct: 189 YQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIPWDLRKIDRYESYDEFEWE 248
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
I K GD RYLVR+ EM ES+KII+Q + L G S + P+ D +
Sbjct: 249 IQWQKQGDSLARYLVRLSEMTESIKIIQQALEGLPGGPYENLESRGFDRKRNPEWNDFEY 308
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
S K + + + E+Y VEAPKGE G++LI D P+R KIR PG+ +LQ
Sbjct: 309 RFIS-----KKPSPTFELSKQELYVRVEAPKGELGIFLIGDQSGFPWRWKIRPPGFINLQ 363
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 364 ILPELVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|290489832|gb|ADD31323.1| NADH-plastoquinone oxidoreductase subunit 7 protein [Oxalis
latifolia]
Length = 393
Score = 380 bits (975), Expect = e-103, Method: Composition-based stats.
Identities = 161/393 (40%), Positives = 222/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E E+L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F +
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVATDLPHGWIDKCFDFCDYFLTG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+ N IF +R +G + E A WG SG M+R SG WDLRK YE Y E
Sbjct: 186 VTEYQKLIKRNPIFLERVEGVGIIDEEKAINWGLSGPMLRASGIQWDLRKVDHYEYYDEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+++ K GD RYLVR+ EM ES+KII+Q + + G GP + + +
Sbjct: 246 DWEVQWQKEGDSLARYLVRIGEMTESIKIIQQALEGIPG----GPYENLEIRCFDRESNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + +P E+Y VEAPKGE G++LI D + P+R KIR PG+
Sbjct: 302 EWNDFE-YRFISKKASPTFELPKQELYVRVEAPKGELGIFLIGDRSSFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GE+DR
Sbjct: 361 NLQIIPQLVKRMKLADIMTILGSIDIIMGEIDR 393
>gi|139389700|ref|YP_001123256.1| NADH dehydrogenase 49KDa protein [Arabis hirsuta]
gi|218527815|sp|A4QK76|NDHH_ARAHI RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|134286455|dbj|BAF50081.1| NADH dehydrogenase 49KDa protein [Arabis hirsuta]
Length = 393
Score = 379 bits (974), Expect = e-103, Method: Composition-based stats.
Identities = 161/390 (41%), Positives = 221/390 (56%), Gaps = 5/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E + +Q +PY
Sbjct: 9 DLMIVNMGPHHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRAIIQYLPYVT 68
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R DY+A M E E+L I++P R IRV+ E+ RI SHLL + D+GA
Sbjct: 69 RWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQ 128
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP + F ERE + +E A+G RM +FR GG+ D+P ++ +CD F + + +
Sbjct: 129 TPFFYIFREREFVYDLFEAATGMRMMHNFFRIGGIAADLPYGWIDKCLDFCDYFLTEVIE 188
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
L+T N IF +R +G + E+A WG SG M+R SG WDLRK YE Y E +++
Sbjct: 189 YQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIPWDLRKVDRYESYDEFEWE 248
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
I K GD RYLVR+ EM ES+KII+Q + L G GP + + KR
Sbjct: 249 IQWQKQGDSLARYLVRLSEMTESIKIIQQALEGLPG----GPYENLESRGFDRKRNPEWN 304
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
E K + + + E+Y VEAPKGE G+++I D P+R KIR PG+ +LQ
Sbjct: 305 DFE-YRFISKKPSPTFELSKQELYVRVEAPKGELGIFIIGDQSGFPWRWKIRPPGFINLQ 363
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 364 ILPELVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|197131398|gb|ACH47217.1| NADH-plastoquinone oxidoreductase subunit 7 [Geranium macrorrhizum]
Length = 393
Score = 379 bits (974), Expect = e-103, Method: Composition-based stats.
Identities = 163/396 (41%), Positives = 226/396 (57%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + +N GP HP+ HGVLRLIL LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 IPTTRKNFMILNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E A EKL I++P R IR + E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEGITVKAPEKLGNIQVPKRASYIRTIMLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+G TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 123 ADIGTQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPHGWIDKCLDFCDYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ L + L+T N IF +R IG + E+A WG SG M+R SG WDLRK Y+CY
Sbjct: 183 LTGLAEYEKLITRNPIFLERVEGIGIIGKEEAINWGLSGPMLRASGIQWDLRKIDNYDCY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+E D+++ K GD R+LVR+ EMRES+K+I+Q + + G + P+
Sbjct: 243 NEFDWEVQWQKEGDSLARFLVRIGEMRESIKMIQQALEGIPGGPYENLEIRCFDRESYPE 302
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ S K + + +P E+Y VEAPKGE G+++I D + P+R KIR P
Sbjct: 303 WGGFEYRFVS-----KKPSPTFELPKQELYVRVEAPKGELGIFMIGDQSSFPWRWKIRPP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 358 GFINLQILPQLVKRMRLADIMTILGSIDIIMGEVDR 393
>gi|170784786|ref|YP_001718702.1| NADH-plastoquinone oxidoreductase subunit 7 [Trachelium caeruleum]
gi|170784798|ref|YP_001718714.1| NADH-plastoquinone oxidoreductase subunit 7 [Trachelium caeruleum]
gi|156598785|gb|ABU85646.1| NADH-plastoquinone oxidoreductase subunit 7 [Trachelium caeruleum]
gi|157267534|gb|ABV26527.1| NADH-plastoquinone oxidoreductase subunit 7 [Trachelium caeruleum]
gi|157267546|gb|ABV26539.1| NADH-plastoquinone oxidoreductase subunit 7 [Trachelium caeruleum]
Length = 393
Score = 379 bits (974), Expect = e-103, Method: Composition-based stats.
Identities = 161/393 (40%), Positives = 223/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E+L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM +FR GGV D+P ++ +CD F ++
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNFFRIGGVAADLPHGWIDKCLDFCDYFLTS 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY E
Sbjct: 186 ISEYQKLITRNPIFLERVEGVGIIGEEEAINWGLSGPMLRASGIQWDLRKVDHYECYDEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+++ K GD RYLVR+ EM ES+KII+Q + + G ++ P D
Sbjct: 246 DWEVQWQKEGDSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLEIRRFDRVRDPGWND 305
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
S K + + + E+Y VEAPKGE G++ I D P+R KIR P +
Sbjct: 306 FDYRFIS-----KKPSPTFELSKQELYVRVEAPKGELGIFFIGDKSVFPWRWKIRPPAFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|87300863|ref|ZP_01083705.1| NADH dehydrogenase (ubiquinone) [Synechococcus sp. WH 5701]
gi|87284734|gb|EAQ76686.1| NADH dehydrogenase (ubiquinone) [Synechococcus sp. WH 5701]
Length = 394
Score = 379 bits (974), Expect = e-103, Method: Composition-based stats.
Identities = 161/395 (40%), Positives = 228/395 (57%), Gaps = 6/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +NFGP HP+ HGVLRL++ LDGE V +P IG LHRG EK+ E +T + V
Sbjct: 5 ETRTEPMVVNFGPHHPSMHGVLRLVVTLDGEDVVDCEPVIGYLHRGMEKIAENRTNVMFV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R DY A M E A EKL I++P R IRVL E+ RI +HLL + D
Sbjct: 65 PYVSRWDYAAGMFNEAITVNAPEKLASIQVPKRASYIRVLMLELNRIANHLLWLGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSR-MHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E A+G R ++ YFR GGV D+P +E +CD F
Sbjct: 125 VGAQTPFFYIFREREMIYDLWEAATGQRLINNNYFRIGGVAADLPYGWLEKCLDFCDYFG 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IFK+R +G + E A W SG M+R SG WDLRK YECY
Sbjct: 185 PKIDEYEKLITNNPIFKRRIEGLGVISREMAINWSLSGPMLRASGVPWDLRKVDKYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ ++D+ K GDCY RY VR+ EMR+S+KI+RQ + G GP + + + +
Sbjct: 245 DFEWDVAWEKEGDCYARYRVRIEEMRQSLKILRQACTAIPG----GPTENLEAQRMNEGK 300
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ + K + +P GE+YA VE+ KGE GV+++ + P+R KIRA
Sbjct: 301 KSSWYDFD-YQYVAKKVAPTFKIPGGELYARVESGKGELGVFIMGNDDVTPWRWKIRAAD 359
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +LQ + + G ++AD+ AILGS+D++ G VDR
Sbjct: 360 FNNLQILPHILTGAKVADIMAILGSIDVIMGSVDR 394
>gi|290489812|gb|ADD31313.1| NADH-plastoquinone oxidoreductase subunit 7 protein [Nerium
oleander]
Length = 393
Score = 379 bits (974), Expect = e-103, Method: Composition-based stats.
Identities = 163/393 (41%), Positives = 224/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E E+L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F +
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPHGWIDKCLDFCDYFLTG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G ++ E+A WG SG M+R SG WDLRK YECY E
Sbjct: 186 VAEYKKLITRNPIFLERVEGVGIIRGEEALNWGLSGPMLRASGIQWDLRKVDHYECYDEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+++ K GD RYLVR+ EM ES+KII+Q + + G GP + + +
Sbjct: 246 DWEVQWQKEGDSLARYLVRIGEMSESIKIIQQALEGIPG----GPYENLEIRRFDRVKDS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G++LI D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFISKKPSPTFELAKQELYVRVEAPKGELGIFLIGDLSVFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|74381765|emb|CAI53850.1| NADH dehydrogenase 49KDa subunit [Acorus calamus]
Length = 400
Score = 379 bits (974), Expect = e-103, Method: Composition-based stats.
Identities = 164/393 (41%), Positives = 225/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 13 TRQDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 72
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E E+L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 73 YVTRWDYLATMFTEAITVNGPEQLGNIQIPKRASYIRVIMLELSRIASHLLWLGPFMADI 132
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F +
Sbjct: 133 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLTG 192
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY+E
Sbjct: 193 IVEYEKLITQNPIFLERVERVGIISGEEAINWGLSGPMLRASGIEWDLRKVDNYECYNEF 252
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+++ K GD RYLVR+ EM+ES+KII+Q + + G GP + + +
Sbjct: 253 DWEVQWQKEGDSLARYLVRISEMKESIKIIQQALEGIPG----GPYENLEVRRFDKVKDS 308
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G++LI D P+R KIR PG+
Sbjct: 309 EWNDFE-YRFISKKPSPTFELAKQELYVRVEAPKGELGIFLIGDNSVFPWRWKIRPPGFI 367
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 368 NLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 400
>gi|149390597|ref|YP_001294241.1| NADH-plastoquinone oxidoreductase subunit 7 [Buxus microphylla]
gi|218527818|sp|A6MM93|NDHH_BUXMI RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|146762342|gb|ABQ45306.1| NADH-plastoquinone oxidoreductase subunit 7 [Buxus microphylla]
Length = 393
Score = 379 bits (974), Expect = e-103, Method: Composition-based stats.
Identities = 163/393 (41%), Positives = 225/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLIIVNMGPHHPSMHGVLRLIVSLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E+L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITINAPEQLGNIQVPKRASHIRVIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F +
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPHGWIDKCLDFCDYFLTG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N +F +R +G + E+A WG SG M+R SG WDLRK YECY E
Sbjct: 186 VVEYQKLITRNPVFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYECYDEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+++ K GD RYLVR+ EM ES+KII+Q + + G GP + + + +
Sbjct: 246 DWEVQWQKEGDSLARYLVRISEMTESIKIIQQALEGIPG----GPYENLEVRRLDRTKDS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G++LI D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFISKKPSPTFELSKQELYVRVEAPKGELGIFLIGDQSVFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|34500970|ref|NP_904155.1| NADH dehydrogenase subunit 7 [Amborella trichopoda]
gi|75294670|sp|Q70XV8|NDHH_AMBTC RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|34481685|emb|CAD45162.1| NADH dehydrogenase 49KDa subunit [Amborella trichopoda]
Length = 393
Score = 379 bits (973), Expect = e-103, Method: Composition-based stats.
Identities = 166/393 (42%), Positives = 223/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
++ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRNDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E+L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEELGNIQVPRRASYIRVIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE L +E A+G RM +FR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELLYDLFETATGMRMMHNFFRIGGVAADLPHGWIDKCLDFCDYFLPE 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY E
Sbjct: 186 VAEYQKLITRNPIFLERVEGVGFIAEEEAINWGLSGPMLRASGIPWDLRKVDHYECYDEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+++ K GD RYLVR+ EM ESVKII+Q + + G GP + + R
Sbjct: 246 DWEVQWQKEGDSLARYLVRISEMIESVKIIQQALEGIPG----GPYENLEARRFDRVRNI 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G++LI D P+R KIR PG
Sbjct: 302 EWNDFE-YRFISKKPSPTFELSKQELYVRVEAPKGELGIFLIGDNSVFPWRWKIRPPGLI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|139390008|ref|YP_001123607.1| NADH dehydrogenase 49KDa protein [Draba nemorosa]
gi|218527771|sp|A4QL77|NDHH_DRANE RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|134286810|dbj|BAF50432.1| NADH dehydrogenase 49KDa protein [Draba nemorosa]
Length = 393
Score = 379 bits (973), Expect = e-103, Method: Composition-based stats.
Identities = 162/390 (41%), Positives = 221/390 (56%), Gaps = 5/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E + +Q +PY
Sbjct: 9 DLMIVNMGPHHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRAIIQYLPYVT 68
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R DY+A M E E+L I+IP R IRV+ E+ RI SHLL + D+GA
Sbjct: 69 RWDYLATMFTEAITVNGPEQLGNIQIPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQ 128
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP + F ERE + +E A+G RM +FR GG+ D+P ++ +CD F + + +
Sbjct: 129 TPFFYIFREREFVYDLFEAATGMRMMHNFFRIGGIAADLPYGWIDKCLDFCDYFLTEVVE 188
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
L+T N IF +R +G + E+A WG SG M+R SG WDLRK YE Y E +++
Sbjct: 189 YQKLITRNPIFLERVEGVGIIDGEEAINWGLSGPMLRASGIPWDLRKVDRYESYDEFEWE 248
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
I K GD RYLVR+ EM ES+KII+Q + L G S + P+ D +
Sbjct: 249 IQWQKQGDSLARYLVRLSEMTESIKIIQQALEGLPGGPYENLESRGFDRKRNPEWNDFEY 308
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
S K + + + E+Y VEAPKGE G++LI D P+R KIR PG+ +LQ
Sbjct: 309 RFIS-----KKPSPTFELSKQELYVRVEAPKGELGIFLIGDQSGFPWRWKIRPPGFINLQ 363
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 364 ILPELVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|87043013|ref|YP_492627.1| NADH dehydrogenase subunit 7 [Dictyostelium citrinum]
gi|122000119|sp|Q2LCR5|NDUS2_DICCI RecName: Full=NADH-ubiquinone oxidoreductase 49 kDa subunit;
AltName: Full=NADH dehydrogenase subunit 7
gi|84682113|gb|ABC60378.1| NADH dehydrogenase subunit 7 [Dictyostelium citrinum]
Length = 406
Score = 379 bits (973), Expect = e-103, Method: Composition-based stats.
Identities = 221/396 (55%), Positives = 287/396 (72%), Gaps = 10/396 (2%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
++FT+NFGPQHPAAHGVLRLI+EL+ E V RV+PHIGLLHRGTEKLIE KT+ QA+PYFD
Sbjct: 15 KNFTLNFGPQHPAAHGVLRLIVELESENVVRVEPHIGLLHRGTEKLIEGKTYTQALPYFD 74
Query: 67 RLDYVAPMNQEHAYALAVEKLL------GIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
RLDYV+ QEHAY+LAVE+L +EIP R ++IRVL+SEI R+L+H++ TT A
Sbjct: 75 RLDYVSMNVQEHAYSLAVERLYLDSLDIELEIPQRAKVIRVLFSEITRVLNHIMATTTHA 134
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTP LW FEEREKLM FYER SG+RMHAAY RPGGV D+P + EDI + +
Sbjct: 135 MDVGALTPFLWAFEEREKLMEFYERVSGARMHAAYIRPGGVAFDLPMNISEDIYKFVIQY 194
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L +I D+L NRI+KQR V+IG V E+A +GF+G ++RG+G +D+RK+ PY+ Y
Sbjct: 195 RKRLEEIEDMLINNRIWKQRLVDIGIVSAEEALNYGFTGPLLRGAGIVYDIRKNYPYDDY 254
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+ DF I IG+ + Y R+++RM EM +S+ II Q +N L G + I P
Sbjct: 255 DKYDFKIIIGEENNSYTRFIIRMKEMYQSLAIIEQALNNLR----PGLIKLEGVNITAPD 310
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
RA +K+ MES I+HFK ++EG+ +P E Y VEAPKGEFG+YL ++ KPYRC+I+AP
Sbjct: 311 RAFVKKDMESCINHFKFFSEGFIIPANENYTIVEAPKGEFGIYLNANDTAKPYRCRIKAP 370
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ HLQ + + K H LADV ++G+ DIVFGEVDR
Sbjct: 371 GFLHLQGLNMMSKDHLLADVVTLIGTQDIVFGEVDR 406
>gi|294637177|ref|ZP_06715485.1| NADH-quinone oxidoreductase, C/D subunit [Edwardsiella tarda ATCC
23685]
gi|291089641|gb|EFE22202.1| NADH-quinone oxidoreductase, C/D subunit [Edwardsiella tarda ATCC
23685]
Length = 598
Score = 379 bits (973), Expect = e-103, Method: Composition-based stats.
Identities = 152/394 (38%), Positives = 229/394 (58%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP++HG R++L+LDGE + P IG HRG EK+ E +++ +
Sbjct: 209 TENEDFMFLNLGPNHPSSHGAFRIVLQLDGEDIVDCVPDIGYHHRGAEKMGERQSWHSYI 268
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GIE+P R ++IRV+ SE+ RI SHLL ++T D
Sbjct: 269 PYTDRIEYLGGCVNEMPYVLAVEKLAGIEVPERVKVIRVMLSELFRINSHLLYISTFIQD 328
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + + P
Sbjct: 329 VGAMTPVFFAFTDRQKIYDIVEAVTGFRMHPAWFRIGGVAHDLPKGWDRLLREFLEWMPK 388
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R+V + +DA WG +G +R +G A+D+RK +PY Y
Sbjct: 389 RLDSYVKAALQNTILKGRSVGVAAYSAKDALAWGTTGAGLRATGIAFDVRKWRPYSGYEN 448
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+F++P +GDCYDR ++++ E+R+S++I+ QC+ + GP A P PP +
Sbjct: 449 FEFEVPTASNGDCYDRVMLKVEEVRQSLRILHQCLKNM----PEGPFKADHPLTTPPPKE 504
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ +++LI+HF + G +P E + VEA KG YL SDG YR +IR P Y
Sbjct: 505 RTLQHIDTLINHFLQVSWGPVMPANESFQMVEATKGINSYYLTSDGSTMSYRTRIRTPSY 564
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 565 AHLQQIPSVIRGCLVSDLIVYLGSIDFVMSDVDR 598
>gi|220908768|ref|YP_002484079.1| NAD(P)H-quinone oxidoreductase subunit H [Cyanothece sp. PCC 7425]
gi|219865379|gb|ACL45718.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 7425]
Length = 394
Score = 379 bits (973), Expect = e-103, Method: Composition-based stats.
Identities = 166/395 (42%), Positives = 225/395 (56%), Gaps = 6/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ IN GP HP+ HGVLRL++ LDGE V +P IG LHRG EK+ E +T + +
Sbjct: 5 ETRTEPMVINMGPHHPSMHGVLRLMVTLDGENVIDCEPVIGYLHRGMEKIAENRTNIMFI 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R DY A M E A EKL GI +P R IRV+ E+ RI +HLL + D
Sbjct: 65 PYVSRWDYAAGMFNEAITVNAPEKLAGIAVPKRASYIRVVMLELNRIANHLLWLGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRM-HAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + E SG R + YFR GGV D+ V +CD F
Sbjct: 125 VGAQTPFFYIFRERELIYDLLEAVSGMRFINNNYFRMGGVAADLTYGWVSKCLDFCDYFL 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF +R +GT+ E+A WG SG M+RGSG WDLR+ YECY
Sbjct: 185 PKVDEYERLITNNPIFIRRLEGVGTISREEAINWGLSGPMLRGSGVNWDLRRVDHYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+++ GDC RY+VR+ EMRESVKIIRQ + L G GP + + +
Sbjct: 245 DFDWEVQWETAGDCIARYVVRIREMRESVKIIRQALKGLPG----GPYENLEAQRMFEGP 300
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
K + + K + +P GE+YA VE KGE G+YLI + P+R KIR P
Sbjct: 301 KS-KWNEFDYQYLGKKLAPTFKIPEGELYARVETGKGELGIYLIGNDNVFPWRWKIRPPD 359
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +LQ + L +G ++AD+ AILGS+D++ G VDR
Sbjct: 360 FNNLQCLPQLLRGMKVADIVAILGSIDVIMGSVDR 394
>gi|326200335|gb|ADZ52374.1| NADH dehydrogenase 49 kDa subunit [Asclepias syriaca]
Length = 393
Score = 379 bits (973), Expect = e-103, Method: Composition-based stats.
Identities = 164/393 (41%), Positives = 226/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ T+N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMTVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E E L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNGPELLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GG+ D+P ++ +C+ F +
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGIATDLPYGWMDKCLDFCNYFLTG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G ++ E+A WG SG M+RGSG WDLRK YECY E
Sbjct: 186 VAEYKKLITRNPIFLERVEGVGVIRGEEALNWGLSGPMLRGSGIQWDLRKVDHYECYDEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+++ K GD RYLVR+ EM ES+KII+Q + + G GP + + +
Sbjct: 246 DWEVQWQKEGDSLARYLVRIGEMTESIKIIQQALEGIPG----GPYENLEIRRFDRVKDS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G++LI D G P+R KIR PG+
Sbjct: 302 EWNDFE-YRFISKKPSPTFELAKQELYVRVEAPKGELGIFLIGDLGVFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|138896930|ref|YP_001127383.1| NADH dehydrogenase subunit D [Geobacillus thermodenitrificans
NG80-2]
gi|218534409|sp|A4ITI4|NUOD_GEOTN RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|134268443|gb|ABO68638.1| NADH-quinone oxidoreductase chain D [Geobacillus
thermodenitrificans NG80-2]
Length = 366
Score = 379 bits (973), Expect = e-103, Method: Composition-based stats.
Identities = 158/391 (40%), Positives = 222/391 (56%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RLIL++DGEI++ P IG LHRGTEK+ E + Q +PY
Sbjct: 3 RTEEMILNVGPQHPSTHGVFRLILKIDGEIIQEATPVIGYLHRGTEKIAEGLQYTQIIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY++ M + AVE ++GIE+P R + +RVL E+GRI SHL+ T +D+G
Sbjct: 63 TDRMDYLSAMTNNYVLCHAVETMMGIEVPERAEYLRVLAMELGRIASHLVWWGTYLLDLG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A +P L+ F ERE ++ SG+R+ Y R GGV D P ++ + + L
Sbjct: 123 ATSPFLYAFREREMIINLLNELSGARLTFNYMRIGGVKWDAPDGWIDKVKQFVPYMREKL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
DL+TGN IF++R +G E+A + SGV +R +G WDLRK +PY Y D
Sbjct: 183 AGYHDLVTGNEIFRERVTGVGRYTKEEAISYSLSGVNLRSTGVKWDLRKDEPYSVYDRFD 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FD+P+ + GDC RY RM E+ +S++II Q + GP+ P+I+
Sbjct: 243 FDVPVREGGDCLARYECRMAEIEQSLRIIEQACEQFPAD---GPIMGKLPRII------- 292
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE + +EAP+GE G Y+ SDG +PYR K R P + +
Sbjct: 293 ------------------KAPPGETFVRIEAPRGEIGCYIASDGKKEPYRLKFRRPSFYN 334
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L KG LA+V AILGS+DIV GEVD
Sbjct: 335 LQILPKLLKGENLANVIAILGSIDIVLGEVD 365
>gi|7524987|ref|NP_050085.1| NADH dehydrogenase subunit 7 [Dictyostelium discoideum]
gi|6647670|sp|Q23883|NDUS2_DICDI RecName: Full=NADH-ubiquinone oxidoreductase 49 kDa subunit;
AltName: Full=NADH dehydrogenase subunit 7
gi|1088421|dbj|BAA04731.1| 49kd subunit of iron-sulphur subcomplex of NADH-ubiquinone
reductase [Dictyostelium discoideum]
gi|4958890|dbj|BAA78067.1| NADH dehydrogenase subunit 7 [Dictyostelium discoideum]
Length = 406
Score = 379 bits (973), Expect = e-103, Method: Composition-based stats.
Identities = 221/396 (55%), Positives = 287/396 (72%), Gaps = 10/396 (2%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
++FT+NFGPQHPAAHGVLRLI+EL+ E V RV+PHIGLLHRGTEKLIE KT+ QA+PYFD
Sbjct: 15 KNFTLNFGPQHPAAHGVLRLIVELESENVVRVEPHIGLLHRGTEKLIEGKTYTQALPYFD 74
Query: 67 RLDYVAPMNQEHAYALAVEKLL------GIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
RLDYV+ QEHAY+LAVE+L +EIP R ++IRVL+SEI R+L+H++ TT A
Sbjct: 75 RLDYVSMNVQEHAYSLAVERLYLDSLDIELEIPQRAKVIRVLFSEITRVLNHIMATTTHA 134
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTP LW FEEREKLM FYER SG+RMHAAY RPGGV D+P + EDI + +
Sbjct: 135 MDVGALTPFLWAFEEREKLMEFYERVSGARMHAAYIRPGGVAFDLPMNISEDIYKFVIQY 194
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L +I D+L NRI+KQR V+IG V E+A +GF+G ++RG+G +D+RK+ PY+ Y
Sbjct: 195 RKRLEEIEDMLINNRIWKQRLVDIGIVSAEEALNYGFTGPLLRGAGIVYDIRKNYPYDDY 254
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+ DF I IG+ + Y R+++RM EM +S+ II Q +N L G + I P
Sbjct: 255 DKYDFKIIIGEENNSYTRFIIRMKEMYQSLSIIEQALNNLR----PGLIKLEGVNITAPD 310
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
RA +K+ MES I+HFK ++EG+ +P E Y VEAPKGEFG+YL ++ KPYRC+I+AP
Sbjct: 311 RAFVKKDMESCINHFKFFSEGFIIPANENYTIVEAPKGEFGIYLNANDTAKPYRCRIKAP 370
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ HLQ + + K H LADV ++G+ DIVFGEVDR
Sbjct: 371 GFLHLQGLNMMSKDHLLADVVTLIGTQDIVFGEVDR 406
>gi|260887650|ref|ZP_05898913.1| proton-translocating NADH-quinone oxidoreductase, D subunit
[Selenomonas sputigena ATCC 35185]
gi|330838009|ref|YP_004412589.1| NADH dehydrogenase (quinone) [Selenomonas sputigena ATCC 35185]
gi|260862666|gb|EEX77166.1| proton-translocating NADH-quinone oxidoreductase, D subunit
[Selenomonas sputigena ATCC 35185]
gi|329745773|gb|AEB99129.1| NADH dehydrogenase (quinone) [Selenomonas sputigena ATCC 35185]
Length = 365
Score = 378 bits (972), Expect = e-103, Method: Composition-based stats.
Identities = 153/392 (39%), Positives = 226/392 (57%), Gaps = 29/392 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ ++ +N GPQHP+ HGVL++ LEL GE +ER P +G LHRG EKL+E++T+ Q +P
Sbjct: 2 AEKSTYILNMGPQHPSTHGVLQVELELSGERIERAKPILGYLHRGIEKLMESRTYAQCLP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y D+LDYV+ MN A+ AVEKL GI +P+R + +RV+ +E+ RI SHL+ + T D+
Sbjct: 62 YTDKLDYVSSMNNNLAWCTAVEKLAGIRVPLRAEYLRVIAAELNRIASHLVFIGTLLNDL 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA T ++ F +REK++ ++ G+RM +Y R GGV D E +E + D P
Sbjct: 122 GAATAFVYAFRDREKVLDLFDLICGARMSTSYIRLGGVAFDATEEFIEKTQAFLDYVPEM 181
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L + +L+TGN IF R + + E+A SG +R +G A+D+R+ +PY Y L
Sbjct: 182 LEEYDNLITGNEIFYARMKGVSPMTAEEAKALSLSGANLRATGVAYDIRRVEPYSVYDRL 241
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DF++P+G GD +DRY VR+ E+ ES KIIRQ + + +
Sbjct: 242 DFEVPVGTLGDDWDRYEVRLKEIGESAKIIRQALKEMPEGSCR----------------- 284
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
K+ + P G VY VE +GE G Y++SDG KPYR IR P +
Sbjct: 285 ------------KVVSPNLRPPKGSVYHRVENTRGELGFYIVSDGTAKPYRVHIRRPSFV 332
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+LQA++ LC+G +AD + +LD + GEVD
Sbjct: 333 NLQALDPLCRGTLVADSVVVYSTLDPLMGEVD 364
>gi|238751246|ref|ZP_04612740.1| NADH-quinone oxidoreductase subunit C/D [Yersinia rohdei ATCC
43380]
gi|238710520|gb|EEQ02744.1| NADH-quinone oxidoreductase subunit C/D [Yersinia rohdei ATCC
43380]
Length = 598
Score = 378 bits (972), Expect = e-103, Method: Composition-based stats.
Identities = 152/394 (38%), Positives = 226/394 (57%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP++HG R++L+LDGE + P +G HRG EK+ E +++ +
Sbjct: 209 TENEDFMFLNLGPNHPSSHGAFRIVLQLDGEEIVDCVPDVGYHHRGAEKMGERQSWHSYI 268
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GIE+P R + IRV+ SE+ RI SHLL ++T D
Sbjct: 269 PYTDRIEYLGGCVNEMPYVLAVEKLAGIEVPDRVKTIRVMLSELFRINSHLLYISTFIQD 328
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 329 VGAMTPVFFAFTDRQKVYDLVEAITGFRMHPAWFRIGGVAHDLPRGWERLLRDFLDWMPK 388
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R+V + ++A WG +G +R +G +D+RK +PY Y
Sbjct: 389 RLDSYVKAALQNSILKGRSVGVAAYNAKEALEWGVTGAGLRATGVEFDVRKWRPYSGYEN 448
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF++P+G +GDCYDR ++++ E+R+S++I+ QC + GP A P PP +
Sbjct: 449 FDFEVPVGNNGDCYDRVMLKVEELRQSLRILEQCYKNM----PEGPFKADHPLTTPPPKE 504
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ +E+LI HF + G +P E + VEA KG YL SD YR +IR P Y
Sbjct: 505 RTLQHIETLITHFLQVSWGPVMPANESFQMVEATKGINSYYLTSDASTMSYRTRIRTPSY 564
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 565 AHLQQIPSVIRGSLVSDLIVYLGSIDFVMSDVDR 598
>gi|77463674|ref|YP_353178.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Rhodobacter sphaeroides 2.4.1]
gi|123591709|sp|Q3J1Q7|NUOCD_RHOS4 RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|77388092|gb|ABA79277.1| NADH-ubiquinone oxidoreductase, chain 49kDa / NADH dehydrogenase
(ubiquinone), 30 kDa subunit [Rhodobacter sphaeroides
2.4.1]
Length = 580
Score = 378 bits (972), Expect = e-103, Method: Composition-based stats.
Identities = 163/390 (41%), Positives = 232/390 (59%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+NFGP HP+ HGVLR++L LDGE V P IG HRG EK+ E +T+ +PY D
Sbjct: 195 ELMVLNFGPHHPSTHGVLRILLGLDGEEVVWAWPDIGYHHRGAEKMAERQTWHGFIPYCD 254
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+DY+ + E Y LAVE+L GI +P R Q+IRV+ E RI++HLL T A DVGA+
Sbjct: 255 RIDYLGGVISELPYLLAVERLCGIAVPPRAQMIRVMLCEFYRIMNHLLFYGTMAQDVGAM 314
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
+P + F +REK +G+RMH A+FR GGV D+P + + D P+ L++
Sbjct: 315 SPVFYMFTDREKGHEILNAITGARMHPAFFRIGGVAMDLPDGWDAMVRGFLDWMPARLDE 374
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
++ + +F+ R V +G + A WG +G +R +G WDLRK +PY Y + DF+
Sbjct: 375 YERMVLRSELFRARTVGVGAYDTDTALTWGTTGPGLRATGCDWDLRKLRPYSGYEQFDFE 434
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+P+G+ GD +DR VR EMRES+KIIRQC+ + GPV A P PP R M++
Sbjct: 435 VPLGQRGDIFDRTRVRADEMRESLKIIRQCLENM----PEGPVKADHPLTTPPPRGAMQK 490
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+E+LI HF + G VP GE +E +G ++SDGG + YR +IR P +AHLQ
Sbjct: 491 DIETLIAHFLQSSWGTVVPAGEATGQIEGHRGLTQYAIVSDGGTQSYRTRIRTPSFAHLQ 550
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + G +AD+ A + S+D V +VDR
Sbjct: 551 MIPKIVPGMTVADLVAHIASIDFVMSDVDR 580
>gi|196249747|ref|ZP_03148443.1| NADH dehydrogenase I, D subunit [Geobacillus sp. G11MC16]
gi|196210623|gb|EDY05386.1| NADH dehydrogenase I, D subunit [Geobacillus sp. G11MC16]
Length = 366
Score = 378 bits (972), Expect = e-103, Method: Composition-based stats.
Identities = 158/391 (40%), Positives = 222/391 (56%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RLIL++DGEI++ P IG LHRGTEK+ E + Q +PY
Sbjct: 3 RTEEMILNVGPQHPSTHGVFRLILKIDGEIIQEATPVIGYLHRGTEKIAEGLQYTQIIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY++ M + AVE ++GIE+P R + +RVL E+GRI SHL+ T +D+G
Sbjct: 63 TDRMDYLSAMTNNYVLCHAVETMMGIEVPERAEYLRVLAMELGRIASHLVWWGTYLLDLG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A +P L+ F ERE ++ SG+R+ Y R GGV D P ++ + + L
Sbjct: 123 ATSPFLYAFREREMIINLLNELSGARLTFNYMRIGGVKWDAPDGWIDKVKQFVPYMREKL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
DL+TGN IF++R +G E+A + SGV +R +G WDLRK +PY Y D
Sbjct: 183 AGYHDLVTGNEIFRERVTGVGRYTKEEAISYSLSGVNLRSTGVKWDLRKDEPYSVYDRFD 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FD+P+ + GDC RY RM E+ +S++II Q + GP+ P+I+
Sbjct: 243 FDVPVREGGDCLARYECRMAEIEQSLRIIEQACEQFPAD---GPIMGKVPRII------- 292
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE + +EAP+GE G Y+ SDG +PYR K R P + +
Sbjct: 293 ------------------KAPPGETFVRIEAPRGEIGCYIASDGKKEPYRLKFRRPSFYN 334
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L KG LA+V AILGS+DIV GEVD
Sbjct: 335 LQILPKLLKGENLANVIAILGSIDIVLGEVD 365
>gi|114107189|ref|YP_740173.1| NADH-plastoquinone oxidoreductase subunit 7 [Daucus carota]
gi|122221297|sp|Q0G9Q6|NDHH_DAUCA RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|113200964|gb|ABI32480.1| NADH-plastoquinone oxidoreductase subunit 7 [Daucus carota]
Length = 393
Score = 378 bits (972), Expect = e-103, Method: Composition-based stats.
Identities = 166/393 (42%), Positives = 225/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
++ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRNDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E+L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM +FR GGV D+P ++ +CD F +
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNFFRIGGVAADLPHGWIDKCLDFCDYFLTR 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YE Y E
Sbjct: 186 VTEYQRLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYESYDEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EM ESVKII+Q + + G K+ P+ D
Sbjct: 246 DWGVQWQKEGDSLARYLVRISEMTESVKIIQQALEGITGGPYENLEIRRFDKVWDPEWND 305
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
S K + + + E+Y VEAPKGE G++LI D G P+R KIR PG+
Sbjct: 306 FDYRFIS-----KKPSPTFELSKQELYVRVEAPKGELGIFLIGDKGIFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|238759964|ref|ZP_04621117.1| NADH-quinone oxidoreductase subunit C/D [Yersinia aldovae ATCC
35236]
gi|238701791|gb|EEP94355.1| NADH-quinone oxidoreductase subunit C/D [Yersinia aldovae ATCC
35236]
Length = 598
Score = 378 bits (972), Expect = e-103, Method: Composition-based stats.
Identities = 151/394 (38%), Positives = 226/394 (57%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP++HG R++L+LDGE + P +G HRG EK+ E +++ +
Sbjct: 209 TENEDFMFLNLGPNHPSSHGAFRIVLQLDGEEIVDCVPDVGYHHRGAEKMGERQSWHSYI 268
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GIE+P R + IRV+ SE+ RI SHLL ++T D
Sbjct: 269 PYTDRIEYLGGCVNEMPYVLAVEKLAGIEVPDRVKTIRVMLSELFRINSHLLYISTFIQD 328
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 329 VGAMTPVFFAFTDRQKVYDVIEAITGFRMHPAWFRIGGVAHDLPRGWERLLRDFLDWMPK 388
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R++ + ++A WG +G +R +G +D+RK +PY Y
Sbjct: 389 RLDSYVKAALQNSILKGRSIGVAAYNAKEALEWGVTGAGLRATGIEFDVRKWRPYSGYEN 448
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF++P+G +GDCYDR ++++ E+R+S++I+ QC + GP A P PP +
Sbjct: 449 FDFEVPVGNNGDCYDRVMLKVEELRQSLRILEQCYKNM----PEGPFKADHPLTTPPPKE 504
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ +E+LI HF + G +P E + VEA KG YL SD YR +IR P Y
Sbjct: 505 RTLQHIETLITHFLQVSWGPVMPANESFQMVEATKGINSYYLTSDASTMSYRTRIRTPSY 564
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 565 AHLQQIPSVIRGSLVSDLIVYLGSIDFVMSDVDR 598
>gi|149390403|ref|YP_001294402.1| NADH dehydrogenase subunit 7 [Dioscorea elephantipes]
gi|218527770|sp|A6MMQ7|NDHH_DIOEL RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|148668095|gb|ABR01479.1| NADH-plastoquinone oxidoreductase subunit 7 [Dioscorea
elephantipes]
Length = 395
Score = 378 bits (972), Expect = e-103, Method: Composition-based stats.
Identities = 164/398 (41%), Positives = 227/398 (57%), Gaps = 7/398 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + +N GP HP+ HGVLRLI+ L+GE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 VPDTRKGLMIVNMGPHHPSMHGVLRLIVTLEGEDVIDCEPILGYLHRGMEKIAENRTIIQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E A E+L +++P R IRV+ E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEAITVNAPEQLGNVQVPQRASYIRVIMLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE L +E ++G RM YFR GGV D+P ++ +CD F
Sbjct: 123 ADIGAQTPFFYIFRERELLYDLFEASTGMRMMHNYFRIGGVAADLPHGWIDKCLDFCDYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ + + L+T N IF R +G + E+A WG SG M+R SG WDLRK YECY
Sbjct: 183 LTRVAEYEKLITRNPIFLDRVEGVGIIGGEEAINWGLSGPMLRASGIPWDLRKVDHYECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+E D+++ K GD RYLVR+ EM ES+KII+Q + + G GP + +
Sbjct: 243 NEFDWEVQWQKEGDSLARYLVRIGEMTESIKIIQQAIEGIPG----GPYENLEVRRFDFD 298
Query: 301 RADMKRSMESLIHHF--KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
A L + F K + + + E+Y VEAPKGE G+Y+I D P+R KIR
Sbjct: 299 GATNSEW-NDLEYGFISKKPSPNFELSKQELYMRVEAPKGELGIYMIGDNSVFPWRWKIR 357
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
PG+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 358 PPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 395
>gi|290489814|gb|ADD31314.1| NADH-plastoquinone oxidoreductase subunit 7 protein [Rhododendron
simsii]
Length = 393
Score = 378 bits (971), Expect = e-103, Method: Composition-based stats.
Identities = 163/393 (41%), Positives = 220/393 (55%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKNLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E+L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITINAPEQLGNIQVPKRASYIRVIILELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G TP + F ERE + +E A+G RM YFR GG+ D+P ++ +CD F
Sbjct: 126 GTQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGIAADLPHGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R G + E+A WG SG M+R SG WDLRK YECY E
Sbjct: 186 VAEYQKLITRNPIFLERVEGAGVIGGEEAINWGLSGPMLRASGIQWDLRKVDHYECYDEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+++ K GD RYLVR+ EM ES+KII+Q + + G GP + + R
Sbjct: 246 DWEVKWQKEGDSLARYLVRIGEMTESIKIIQQALEGIPG----GPYENLEIRRFDRVRNA 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + E+Y VEAPKGE G++LI D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFISKKPSPTFEFSKQELYVRVEAPKGELGIFLIGDQNVFPWRWKIRPPGFV 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQVLPQLVKRMKLADILTILGSIDIIMGEVDR 393
>gi|291326665|ref|ZP_06125358.2| NADH-quinone oxidoreductase, C/D subunit [Providencia rettgeri DSM
1131]
gi|291313439|gb|EFE53892.1| NADH-quinone oxidoreductase, C/D subunit [Providencia rettgeri DSM
1131]
Length = 600
Score = 378 bits (971), Expect = e-103, Method: Composition-based stats.
Identities = 156/393 (39%), Positives = 225/393 (57%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP++HG R++L+LDGE + P IG HRG EK+ E +++ +P
Sbjct: 212 ENEDFMFLNLGPNHPSSHGAFRIVLQLDGEEIIDCVPDIGYHHRGAEKMGERQSWHSYIP 271
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR++Y+ E Y LAVEKL GIE+P R + IRV+ SE+ RI SHLL ++T DV
Sbjct: 272 YTDRIEYLGGCVNEMPYVLAVEKLAGIEVPDRVKTIRVMLSELFRINSHLLYISTYIQDV 331
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 332 GAMTPVFFAFTDRQKVYNVIEAITGFRMHPAWFRIGGVAHDLPRGWEKLLRELLDWLPKR 391
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L N I K R++ E+A WG +G +R +G +D+RK +PY Y
Sbjct: 392 LESYVTSALKNSILKGRSIGTAMYSKEEALAWGVTGAGLRATGVDFDVRKWRPYSGYENF 451
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FDIPI +GDCYDR ++++ EMR+S++I+ QC + GP A P PP +
Sbjct: 452 EFDIPIAHNGDCYDRVMIKVEEMRQSIRILEQCYKNM----PEGPFKADHPLTTPPPKER 507
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ +E+LI+HF + G +P E + VEA KG YL SDG YR +IR P YA
Sbjct: 508 TLQHIETLINHFLQVSWGPVMPANESFQMVEATKGINSYYLTSDGSTMSYRTRIRTPSYA 567
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 568 HLQQIPAVIRGSLVSDLIVYLGSIDFVMSDVDR 600
>gi|71065153|ref|YP_263880.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Psychrobacter arcticus 273-4]
gi|123649363|sp|Q4FU62|NUOCD_PSYA2 RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|71038138|gb|AAZ18446.1| NADH dehydrogenase I, D subunit [Psychrobacter arcticus 273-4]
Length = 591
Score = 378 bits (971), Expect = e-103, Method: Composition-based stats.
Identities = 153/393 (38%), Positives = 219/393 (55%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+AHG RL+L+LDGE V P IG HRG EK+ E +T+ +P
Sbjct: 203 RDEDFMFLNIGPNHPSAHGAFRLVLQLDGEEVVDCIPDIGYHHRGAEKMAERQTWHSFIP 262
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ + E Y ++VEKL GI IP R + IRV+ SE RI ++LL V T D
Sbjct: 263 YTDRIDYLGGVMNELPYIMSVEKLAGITIPPRAETIRVMMSEFFRITNNLLFVGTFIQDA 322
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP + F +R+K E +G RMH A+FR GG D+P + + D P
Sbjct: 323 GGMTPVFYMFTDRQKAYDVIEAVTGYRMHPAWFRIGGTAHDLPRGWQRLVREFLDWMPKR 382
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L++ N + K R + + A WG +G +R +G +DLRK++PY Y
Sbjct: 383 LDEYVKAALQNSVLKGRTQGVAQYNTKQALAWGVTGAGLRATGLDFDLRKARPYMGYENY 442
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DF++P+G +GD YDR +V++ EMR+S++IIRQC++ + GP A P VPP +
Sbjct: 443 DFEVPVGYNGDAYDRCMVKVEEMRQSLRIIRQCMDNM----PQGPYKADHPLAVPPPKDR 498
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+E+LI+HF + G +P GE VEA KG Y+ SD YR +IR P +A
Sbjct: 499 TLNDIETLINHFISVSWGPVMPAGECTTIVEATKGLNSYYITSDKATMSYRTRIRTPTFA 558
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ M + G ++D L S+D+V + DR
Sbjct: 559 HLQQMPSVINGSLVSDAIMYLASIDVVMADCDR 591
>gi|156598632|gb|ABU85572.1| NADH-plastoquinone oxidoreductase subunit 7 [Scaevola aemula]
Length = 395
Score = 378 bits (971), Expect = e-103, Method: Composition-based stats.
Identities = 164/394 (41%), Positives = 226/394 (57%), Gaps = 5/394 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLIL LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDFMLVNMGPHHPSMHGVLRLILSLDGEDVLDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E+L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM +FR GGV D+P ++ +CD F +
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNFFRIGGVAADLPHGWIDKCLDFCDFFLTG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY E
Sbjct: 186 IAEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYECYDEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+++ K GD RYLVR+ EM ES++II+Q + + G GP + + R
Sbjct: 246 DWEVQWQKEGDSLARYLVRISEMTESIQIIQQALEGIPG----GPYENLEIRRFDFDRVK 301
Query: 304 MKRSME-SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ K + + + E+YA VEAPKGE G++LI D + P+R KIR PG+
Sbjct: 302 DPVWNDFDYRFISKKPSPTFELSKQELYARVEAPKGELGIFLIGDKSSFPWRWKIRPPGF 361
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 362 INLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 395
>gi|32267099|ref|NP_861131.1| NADH dehydrogenase subunit D [Helicobacter hepaticus ATCC 51449]
gi|81665418|sp|Q7VFS5|NUOD_HELHP RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|32263151|gb|AAP78197.1| donor-ubiquinone reductase I [Helicobacter hepaticus ATCC 51449]
Length = 409
Score = 378 bits (971), Expect = e-103, Method: Composition-based stats.
Identities = 172/394 (43%), Positives = 243/394 (61%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++++ +NFGPQHP+AHG LRLILEL+ E + + P IG LHRG EK+ E + + +
Sbjct: 18 EQENDKMILNFGPQHPSAHGQLRLILELENEKIIKATPDIGYLHRGIEKMAENMIYNEFM 77
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DRLDY+A + +A+AL VEKL+G++IP+R Q+IR + EI RI+SH+ + Q MD
Sbjct: 78 PTTDRLDYIAATSNNYAFALGVEKLIGVDIPLRAQVIRTMLLEINRIISHIFLLGVQGMD 137
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGAL+ L+ F ERE + E G+R+ R GGV D+P +E + + S P
Sbjct: 138 VGALSIFLYCFIEREYGLDLMEDYCGARLTHNAIRIGGVPLDLPHNFLESVEKFTHSVPK 197
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ + LL NRI++ R N+G + + A W SG+M RGSG WD+RK PYE YSE
Sbjct: 198 TLDLVRGLLDKNRIWRIRLENVGYISQDFAKQWSLSGIMARGSGIKWDIRKHNPYELYSE 257
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LDF++PI GDCY RY + + E+ ES+KII+Q + K + A D + + +
Sbjct: 258 LDFEVPIATEGDCYARYQLYIEEIYESLKIIKQLIAMYPSTPKE--IMAKDARYISAPKE 315
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
D+ SL+ HF L T+G PVGEVY E+PKGE G ++ S G P+R KIR P +
Sbjct: 316 DIMTQNYSLMQHFVLVTQGMRPPVGEVYVPTESPKGELGFFINSQGAPSPHRLKIRTPSF 375
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H+ ++ L GH AD+ AIL S ++VFGE+DR
Sbjct: 376 YHIGVLQELLIGHYFADIPAILASTNVVFGEIDR 409
>gi|269794076|ref|YP_003313531.1| NADH dehydrogenase subunit D [Sanguibacter keddieii DSM 10542]
gi|269096261|gb|ACZ20697.1| NADH dehydrogenase subunit D [Sanguibacter keddieii DSM 10542]
Length = 450
Score = 378 bits (971), Expect = e-103, Method: Composition-based stats.
Identities = 176/414 (42%), Positives = 240/414 (57%), Gaps = 19/414 (4%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + +N GPQHP+ HGVLRL+LE+DGE V +G LH G EK +E +T+ Q
Sbjct: 38 IAELGEERIVVNMGPQHPSTHGVLRLMLEIDGETVTEARCGVGYLHTGIEKNMEFRTWTQ 97
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTT 118
V + R+DY+AP QE AY L +E+LLG+E +P R Q+IRVL E+ R+ SHL+ + T
Sbjct: 98 GVAFCTRMDYLAPFFQEAAYCLGIERLLGVEDDVPERAQVIRVLLMELNRVASHLVCLGT 157
Query: 119 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
++GA T F RE+++ +E +G RM+ A+ RPGGV QD+P L ED
Sbjct: 158 GGNEMGATTVMTVSFTAREEILRIFESITGLRMNHAFIRPGGVAQDVPAGLTEDFWHMDT 217
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
L + DL+ N IF+ R V G + L G +G ++R +G +D+RKS PY
Sbjct: 218 EVRKYLAQLGDLMLANPIFRSRLVGTGHLNLAGCMALGVTGPVLRSAGLPYDVRKSAPYC 277
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
Y DFD+P DCY R ++R+ E +S+KI QC+ RL PV +D KI
Sbjct: 278 GYETYDFDVPTSTEADCYSRVVLRIEECYQSLKIAAQCIERLERSTGD-PVMVADKKIAW 336
Query: 299 PK----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGV 342
P R M SMESLIHHFKL TEG+ VP G+V+ VE P+GE GV
Sbjct: 337 PAQLAIGTDGAGNSLEHIREIMGESMESLIHHFKLVTEGFRVPAGQVFQTVEHPRGELGV 396
Query: 343 YLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L+SDGG +PYR R P + +LQA+ +C+G Q+ADV + SLD V G VDR
Sbjct: 397 HLVSDGGTRPYRAHFRDPSFNNLQAVALMCEGGQVADVVVAVASLDPVLGGVDR 450
>gi|238763928|ref|ZP_04624885.1| NADH-quinone oxidoreductase subunit C/D [Yersinia kristensenii ATCC
33638]
gi|238697896|gb|EEP90656.1| NADH-quinone oxidoreductase subunit C/D [Yersinia kristensenii ATCC
33638]
Length = 598
Score = 378 bits (971), Expect = e-103, Method: Composition-based stats.
Identities = 151/394 (38%), Positives = 225/394 (57%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP++HG R++L+LDGE + P +G HRG EK+ E +++ +
Sbjct: 209 TENEDFMFLNLGPNHPSSHGAFRIVLQLDGEEIVDCVPDVGYHHRGAEKMGERQSWHSYI 268
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GIE+P R + IRV+ SE+ RI SHLL ++T D
Sbjct: 269 PYTDRIEYLGGCVNEMPYVLAVEKLAGIEVPDRVKTIRVMLSELFRINSHLLYISTFIQD 328
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 329 VGAMTPVFFAFTDRQKVYDLVEAITGFRMHPAWFRIGGVAHDLPRGWERLLRDFLDWMPK 388
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L N I K R++ + ++A WG +G +R +G +D+RK +PY Y
Sbjct: 389 RLESYVKAALENSILKGRSIGVAAYNSKEALEWGVTGAGLRATGVEFDVRKWRPYSGYEN 448
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF++P+G +GDCYDR ++++ E+R+S++I+ QC + GP A P PP +
Sbjct: 449 FDFEVPVGNNGDCYDRVMLKVEELRQSLRILEQCYKNM----PEGPFKADHPLTTPPPKE 504
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ +E+LI HF + G +P E + VEA KG YL SD YR +IR P Y
Sbjct: 505 RTLQHIETLITHFLQVSWGPVMPANESFQMVEATKGINSYYLTSDASTMSYRTRIRTPSY 564
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 565 AHLQQIPSVIRGSLVSDLIVYLGSIDFVMSDVDR 598
>gi|15130890|emb|CAC48232.1| NADH dehydrogenase subunit 7 [Takakia lepidozioides]
Length = 364
Score = 378 bits (971), Expect = e-103, Method: Composition-based stats.
Identities = 228/368 (61%), Positives = 282/368 (76%), Gaps = 4/368 (1%)
Query: 21 HGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAY 80
HGVLR + E++GE+VER +PHIGLLHRGTEKLIE KT+LQA+P+FDRLDYV+ M QEHAY
Sbjct: 1 HGVLRSVSEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQAIPHFDRLDYVSMMAQEHAY 60
Query: 81 ALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLM 140
+ AVE+L E+P+R Q IRVL+ EI RIL+HLL +TT AMDVGALTP LW FEEREKL+
Sbjct: 61 SSAVERLCNCEVPLRAQYIRVLFREITRILNHLLALTTHAMDVGALTPFLWAFEEREKLL 120
Query: 141 VFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQR 200
FYER SG+RMHA+Y RPGGV QD+P L EDI + F S +++I ++LT NRI KQR
Sbjct: 121 EFYERVSGARMHASYIRPGGVAQDMPLGLSEDIFLFTQQFASRIDEIEEMLTNNRIRKQR 180
Query: 201 NVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYL 260
V+IGTV + A WGFSGVM+RGSG WD RKS PY+ Y++LDFD+P+G GD YDRY
Sbjct: 181 LVDIGTVTAQQALDWGFSGVMLRGSGVCWDSRKSAPYDVYNQLDFDVPVGTRGDRYDRYC 240
Query: 261 VRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTE 320
+R+ EMR+S++II Q N++ G + A D K+ PP R+ MK+SMES IHHFKLYTE
Sbjct: 241 IRIGEMRQSIRIIMQRPNQM----PSGMIKADDRKLCPPSRSQMKQSMESSIHHFKLYTE 296
Query: 321 GYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADV 380
G VP Y A EAPKGEFGV+L+S+G N+PYRCKIRAPG+AHLQ +F+ K H ADV
Sbjct: 297 GVSVPASSTYTAAEAPKGEFGVFLVSNGTNRPYRCKIRAPGFAHLQGPDFMSKHHMPADV 356
Query: 381 SAILGSLD 388
I+G+ D
Sbjct: 357 VTIIGTQD 364
>gi|313199665|ref|YP_004021281.1| NADH-plastoquinone oxidoreductase subunit 7 [Isoetes flaccida]
gi|291575394|gb|ADE18107.1| NADH-plastoquinone oxidoreductase subunit 7 [Isoetes flaccida]
Length = 393
Score = 378 bits (970), Expect = e-103, Method: Composition-based stats.
Identities = 169/398 (42%), Positives = 228/398 (57%), Gaps = 9/398 (2%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M K I+ GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 MLTTKRDPMIISMGPHHPSMHGVLRLIVTLDGEDVTGCEPILGYLHRGMEKIAENRTVVQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E A A E+L I++P R IR++ E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFAEAVTANAPERLTNIQVPKRASYIRIIMLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE + +E A+G RM YFR GGV D+P V+ +CD F
Sbjct: 123 ADIGAQTPFFYIFREREMIYDLFEAATGMRMMHNYFRIGGVAADLPYGWVDKCLDFCDYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+++ L+T N IF +R +G + E+A WG SG M R SG WD+RK +ECY
Sbjct: 183 LPKVDEYERLITRNPIFLKRVEGVGIIGREEAINWGLSGPMPRASGVKWDVRKVDHHECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
ELD+ I K GD RYLVR+ EMRESVKII+Q + + G GP + + +
Sbjct: 243 DELDWQIQWQKDGDSLARYLVRIGEMRESVKIIKQALEVIPG----GPFENLEARRLDQV 298
Query: 301 RADMKRSMESLIHHF--KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
K + F K + + +P E+Y +EAPKGE G+ + D P+R KIR
Sbjct: 299 N---KSDWNDFDYRFIGKKPSPTFKLPKNELYFRIEAPKGELGISFMGDDSFFPWRFKIR 355
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
PG+ +LQ + L KG +LAD+ ILGS+DI+ GEVDR
Sbjct: 356 PPGFLNLQILPQLLKGVKLADIMTILGSIDIIMGEVDR 393
>gi|149390499|ref|YP_001294327.1| NADH-plastoquinone oxidoreductase subunit 7 [Illicium oligandrum]
gi|218527775|sp|A6MN01|NDHH_ILLOL RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|147917452|gb|ABQ52576.1| NADH-plastoquinone oxidoreductase subunit 7 [Illicium oligandrum]
Length = 393
Score = 378 bits (970), Expect = e-103, Method: Composition-based stats.
Identities = 165/393 (41%), Positives = 223/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E+L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEELGNIQIPKRASYIRVIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + ERE L +E +G RM YFR GGV D+P ++ +CD +
Sbjct: 126 GAQTPFFYISRERELLYDLFEAVTGMRMMHNYFRIGGVAADLPHGWIDKCLDFCDYSLTG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY EL
Sbjct: 186 VAEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYECYDEL 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+++ K GD RYLVR+ EM ES+KII+Q + + G GP + + R
Sbjct: 246 DWEVQWQKEGDSLARYLVRIGEMTESIKIIQQALEGIPG----GPYENLEVRRFDRARDS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G++LI D P+R KIR+PG+
Sbjct: 302 EWNYFE-YRFISKKPSPTFELSKQELYVRVEAPKGELGIFLIGDNSVFPWRWKIRSPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|238794605|ref|ZP_04638212.1| NADH-quinone oxidoreductase subunit C/D [Yersinia intermedia ATCC
29909]
gi|238726091|gb|EEQ17638.1| NADH-quinone oxidoreductase subunit C/D [Yersinia intermedia ATCC
29909]
Length = 598
Score = 378 bits (970), Expect = e-103, Method: Composition-based stats.
Identities = 151/394 (38%), Positives = 226/394 (57%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP++HG R++L+LDGE + P +G HRG EK+ E +++ +
Sbjct: 209 TENEDFMFLNLGPNHPSSHGAFRIVLQLDGEEIVDCVPDVGYHHRGAEKMGERQSWHSYI 268
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GIE+P R + IRV+ SE+ RI SHLL ++T D
Sbjct: 269 PYTDRIEYLGGCVNEMPYVLAVEKLAGIEVPDRVKTIRVMLSELFRINSHLLYISTFIQD 328
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 329 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWERLLRDFLDWMPK 388
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R++ + ++A WG +G +R +G +D+RK +PY Y
Sbjct: 389 RLDSYVKAALQNSILKGRSIGVAAYNSKEALEWGVTGAGLRATGVEFDVRKWRPYSGYEN 448
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF++P+G +GDCYDR ++++ E+R+S++I+ QC + GP A P PP +
Sbjct: 449 FDFEVPVGNNGDCYDRVMLKVEELRQSLRILEQCYKNM----PEGPFKADHPLTTPPPKE 504
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ +E+LI HF + G +P E + VEA KG YL SD YR +IR P Y
Sbjct: 505 RTLQHIETLITHFLQVSWGPVMPANESFQMVEATKGINSYYLTSDASTMSYRTRIRTPSY 564
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 565 AHLQQIPSVIRGSLVSDLIVYLGSIDFVMSDVDR 598
>gi|195953123|ref|YP_002121413.1| NADH-ubiquinone oxidoreductase chain 49kDa [Hydrogenobaculum sp.
Y04AAS1]
gi|195932735|gb|ACG57435.1| NADH-ubiquinone oxidoreductase chain 49kDa [Hydrogenobaculum sp.
Y04AAS1]
Length = 586
Score = 378 bits (970), Expect = e-102, Method: Composition-based stats.
Identities = 158/393 (40%), Positives = 237/393 (60%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K +N+GP HP HG + + +L+GE + + D +G LHRG EK+ E + Q +P
Sbjct: 194 TKKGQLVLNWGPLHPGTHGTMWFLFDLEGEHIIQTDVILGQLHRGMEKIAENLHYFQFLP 253
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY++ + E +Y AVEKL IE+P++ + IR +++E+ RI SHLL + T A+D+
Sbjct: 254 YTDRMDYLSAVCNELSYVQAVEKLANIEVPLKAKYIRTMFAELQRINSHLLWLGTGALDL 313
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALT L+ F EREK+M E +G R+ +A+ R GGVH D+ +E + F S
Sbjct: 314 GALTVFLYAFREREKIMDIIEGNAGFRLTSAFLRIGGVHYDLAKGTLEVAKYFAKDFYSK 373
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L + LLT NRI+ +R ++G + ED + +G +G + RGSG A+D+RK PY Y +
Sbjct: 374 LKEYHGLLTRNRIWLKRTKDVGVITQEDVYQYGLTGPVARGSGVAYDMRKIDPYAAYDLV 433
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DFDIP+G GD YDRYLVRM EM +S +I+ QC+ L + P V P + D
Sbjct: 434 DFDIPVGDIGDVYDRYLVRMEEMYQSARIVEQCIEALEKMPENEPYVNKKHPAVIPPKED 493
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ +E ++ F++ G ++P GEVY++ E P+GE G Y+ S G + PYR +IR+ +
Sbjct: 494 VFDDLEDMVKSFRIVVHGENIPKGEVYSSGENPRGELGFYIYSIGKSSPYRLRIRSCSFY 553
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L + H ++D A+LGS+D V GE DR
Sbjct: 554 NLSVFPKVIYKHTISDAVALLGSIDPVVGETDR 586
>gi|116617164|ref|YP_817538.1| NADH-plastoquinone oxidoreductase subunit 7 [Coffea arabica]
gi|122153675|sp|A0A391|NDHH_COFAR RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|116242220|gb|ABJ89735.1| NADH-plastoquinone oxidoreductase subunit 7 [Coffea arabica]
Length = 395
Score = 378 bits (970), Expect = e-102, Method: Composition-based stats.
Identities = 158/394 (40%), Positives = 220/394 (55%), Gaps = 5/394 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIVQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E E+L I++P R IR + E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRAILLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM +FR GGV D+P ++ +CD F +
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNFFRIGGVAADLPHGWIDKCLDFCDYFLTG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + +T N IF +R +G + E+A WG SG M+R SG WDLRK YECY E
Sbjct: 186 VAEYQKFITRNPIFLERVEGVGIIGGEEALNWGLSGPMLRASGIQWDLRKVDHYECYDEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+++ GD RYLVR+ EM ES+KII+Q + + G GP + + R
Sbjct: 246 DWEVQWQNEGDSLARYLVRIREMTESIKIIQQALEGIPG----GPYENLEIRRFDIDRVK 301
Query: 304 MKRSME-SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ K + + + E+Y VEAPKGE G++L+ D P+R KIR PG+
Sbjct: 302 DPEWNDFEYRFISKKPSPTFELSKQELYVRVEAPKGELGIFLVGDRSVFPWRWKIRPPGF 361
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 362 INLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 395
>gi|308746012|ref|YP_003934615.1| NADH-plastoquinone oxidoreductase subunit 7 [Cheilanthes
lindheimeri]
gi|302375445|gb|ADL29819.1| NADH-plastoquinone oxidoreductase subunit 7 [Cheilanthes
lindheimeri]
Length = 394
Score = 378 bits (970), Expect = e-102, Method: Composition-based stats.
Identities = 163/393 (41%), Positives = 219/393 (55%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K ++ GP HP+ HGVLRL+ GE V + +G LHRG EK+ E +T LQ +P
Sbjct: 6 KNVDPVVVSMGPHHPSMHGVLRLVAVPQGENVVDCELILGYLHRGMEKIAENRTTLQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A EKL I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAVAVNAPEKLANIQIPERASYIRVIMLELSRIASHLLWLGPFLADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P V+ +C
Sbjct: 126 GAQTPFFYIFREREMIYDLFESATGMRMMHNYFRIGGVAADLPYGWVDKCLDFCQYCLPK 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ L+T N IF +R +G + ++A WG SG +R SG WDLRK YECY +L
Sbjct: 186 IHEYERLITKNPIFLRRVQGVGFISRQEAINWGLSGPSLRASGVQWDLRKIDHYECYDKL 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ I GD RYLVR+ EM+ES+ II+Q + L G GP + + + +R
Sbjct: 246 DWQIKWQGEGDSLARYLVRIDEMKESINIIQQALKLLPG----GPYENLEGRRLVQQRDK 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
M S + K + +P E Y VEAPKGE G++LI D P+R KIR PG+
Sbjct: 302 MDWSSFNYQFVGKKSSPTLKLPKQEHYVRVEAPKGELGIFLIGDDSVFPWRLKIRPPGFT 361
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L G +LAD+ ILGS+DI+ GEVDR
Sbjct: 362 NLQILPQLIGGMKLADIMTILGSIDIIMGEVDR 394
>gi|194476805|ref|YP_002048984.1| NADH dehydrogenase (ubiquinone) [Paulinella chromatophora]
gi|229891146|sp|B1X4A5|NDHH_PAUCH RecName: Full=NAD(P)H-quinone oxidoreductase subunit H, organellar
chromatophore; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|171191812|gb|ACB42774.1| NADH dehydrogenase (ubiquinone) [Paulinella chromatophora]
Length = 406
Score = 378 bits (970), Expect = e-102, Method: Composition-based stats.
Identities = 168/402 (41%), Positives = 232/402 (57%), Gaps = 8/402 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ INFGP HP+ HGVLRL++ LDGE V +P IG LHRG EK+ E++T + V
Sbjct: 5 ETRTEPMIINFGPHHPSMHGVLRLVVTLDGEDVVDCEPVIGYLHRGMEKIAESRTAITFV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R DY A M E A EKL+ +EIP R IRVL E+ RI +HLL + D
Sbjct: 65 PYVSRWDYAAGMFNEAITVNATEKLMDLEIPRRASYIRVLMLELNRIANHLLWLGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSR-MHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E +G R ++ YFR GGV D+P ++ +CD F
Sbjct: 125 VGAQTPFFYIFREREMIYDLWEAVTGQRLINNNYFRVGGVACDLPFGWLDKCEDFCDWFG 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R +G + E A W SG M+R SG WDLRK YECY
Sbjct: 185 PKIDEYEQLITNNPIFRRRIEGLGVISREQAINWSLSGPMLRASGVPWDLRKVDHYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+DI K GDCY RYLVR+ EMR+S++I++Q + + G + +
Sbjct: 245 DFDWDIAWAKEGDCYARYLVRIEEMRQSLRILKQALKMIPGGPTENLEAQCGFDSTDTNQ 304
Query: 302 A-DMKRSMESLIHHFKLYTEGYHV------PVGEVYAAVEAPKGEFGVYLISDGGNKPYR 354
D KRS+ + YT G P GE+Y VE+ KGE GV++IS+G P+R
Sbjct: 305 DLDKKRSVATGEVSGNEYTIGPKKINLNKCPEGELYCRVESGKGELGVFIISNGEANPWR 364
Query: 355 CKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
KIRA + +LQ + + G ++ADV AILGS+D++ G VDR
Sbjct: 365 WKIRAADFNNLQILPHILTGAKVADVMAILGSIDVIMGSVDR 406
>gi|123441678|ref|YP_001005662.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Yersinia
enterocolitica subsp. enterocolitica 8081]
gi|218534238|sp|A1JLG6|NUOCD_YERE8 RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|122088639|emb|CAL11434.1| NADH dehydrogenase I chain C/D [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 598
Score = 378 bits (970), Expect = e-102, Method: Composition-based stats.
Identities = 151/394 (38%), Positives = 226/394 (57%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP++HG R++L+LDGE + P +G HRG EK+ E +++ +
Sbjct: 209 TENEDFMFLNLGPNHPSSHGAFRIVLQLDGEEIVDCVPDVGYHHRGAEKMGERQSWHSYI 268
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GIE+P R + IRV+ SE+ RI SHLL ++T D
Sbjct: 269 PYTDRIEYLGGCVNEMPYVLAVEKLAGIEVPDRVKTIRVMLSELFRINSHLLYISTFIQD 328
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 329 VGAMTPVFFAFTDRQKVYDLVEAITGFRMHPAWFRIGGVAHDLPRGWERLLRDFLDWMPK 388
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R++ + ++A WG +G +R +G +D+RK +PY Y
Sbjct: 389 RLDSYVKAALQNSILKGRSIGVAAYNAKEALEWGVTGAGLRATGVEFDVRKWRPYSGYEN 448
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF++P+G +GDCYDR ++++ E+R+S++I+ QC + GP A P PP +
Sbjct: 449 FDFEVPVGNNGDCYDRVMLKVEELRQSLRILEQCYKNM----PEGPFKADHPLTTPPPKE 504
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ +E+LI HF + G +P E + VEA KG YL SD YR +IR P Y
Sbjct: 505 RTLQHIETLITHFLQVSWGPVMPANESFQMVEATKGINSYYLTSDASTMSYRTRIRTPSY 564
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 565 AHLQQIPSVIRGSLVSDLIVYLGSIDFVMSDVDR 598
>gi|332162387|ref|YP_004298964.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|318606466|emb|CBY27964.1| NADH-ubiquinone oxidoreductase chain C; NADH-ubiquinone
oxidoreductase chain D [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325666617|gb|ADZ43261.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|330860334|emb|CBX70647.1| NADH-quinone oxidoreductase subunit C/D [Yersinia enterocolitica
W22703]
Length = 598
Score = 378 bits (970), Expect = e-102, Method: Composition-based stats.
Identities = 151/394 (38%), Positives = 226/394 (57%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP++HG R++L+LDGE + P +G HRG EK+ E +++ +
Sbjct: 209 TENEDFMFLNLGPNHPSSHGAFRIVLQLDGEEIVDCVPDVGYHHRGAEKMGERQSWHSYI 268
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GIE+P R + IRV+ SE+ RI SHLL ++T D
Sbjct: 269 PYTDRIEYLGGCVNEMPYVLAVEKLAGIEVPDRVKTIRVMLSELFRINSHLLYISTFIQD 328
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 329 VGAMTPVFFAFTDRQKVYDLVEAITGFRMHPAWFRIGGVAHDLPRGWERLLRDFLDWMPK 388
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R++ + ++A WG +G +R +G +D+RK +PY Y
Sbjct: 389 RLDSYVKAALQNSILKGRSIGVAAYNAKEALEWGVTGAGLRATGVEFDVRKWRPYSGYEN 448
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF++P+G +GDCYDR ++++ E+R+S++I+ QC + GP A P PP +
Sbjct: 449 FDFEVPVGNNGDCYDRVMLKVEELRQSLRILEQCYKNM----PEGPFKADHPLTTPPPKE 504
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ +E+LI HF + G +P E + VEA KG YL SD YR +IR P Y
Sbjct: 505 RTLQHIETLITHFLQVSWGPVMPANESFQMVEATKGINSYYLTSDASTMSYRTRIRTPSY 564
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 565 AHLQQIPSVIRGSLVSDLIVYLGSIDFVMSDVDR 598
>gi|162421544|ref|YP_001606302.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Yersinia
pestis Angola]
gi|218534246|sp|A9R6L8|NUOCD_YERPG RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|162354359|gb|ABX88307.1| NADH-quinone oxidoreductase, C/D subunit [Yersinia pestis Angola]
Length = 598
Score = 378 bits (970), Expect = e-102, Method: Composition-based stats.
Identities = 151/394 (38%), Positives = 225/394 (57%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP++HG R++L+LDGE + P +G HRG EK+ E +++ +
Sbjct: 209 TENEDFMFLNLGPNHPSSHGAFRIVLQLDGEEIIDCVPDVGYHHRGAEKMGERQSWHSYI 268
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R IRV+ SE+ RI SHLL ++T D
Sbjct: 269 PYTDRIEYLGGCVNEMPYVLAVEKLAGIVVPDRVNTIRVMLSELFRINSHLLYISTFIQD 328
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 329 VGAMTPVFFAFTDRQKVYDVIEAITGFRMHPAWFRIGGVAHDLPRGWERLLRDFLDWMPK 388
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R+V + ++A WG +G +R +G +D+RK +PY Y
Sbjct: 389 RLDSYVKAALQNSILKGRSVGVAAYNAKEALEWGVTGAGLRATGVEFDVRKWRPYSGYEN 448
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF++P+G +GDCYDR ++++ E+R+S++I+ QC + GP A P PP +
Sbjct: 449 FDFEVPVGNNGDCYDRVMLKVEELRQSLRILEQCYKNM----PEGPFKADHPLTTPPPKE 504
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ +E+LI HF + G +P E + +EA KG YL SDG YR +IR P Y
Sbjct: 505 RTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSY 564
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 565 AHLQQIPSVIRGSLVSDLIVYLGSIDFVMSDVDR 598
>gi|18860375|ref|NP_569691.1| NADH dehydrogenase subunit 7 [Psilotum nudum]
gi|28201836|sp|Q8WHX3|NDHH_PSINU RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|18389528|dbj|BAB84280.1| NADH dehydrogenase 49kD subunit [Psilotum nudum]
Length = 393
Score = 377 bits (969), Expect = e-102, Method: Composition-based stats.
Identities = 162/393 (41%), Positives = 226/393 (57%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K ++ GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 KNKDQMIVSMGPHHPSMHGVLRLIVTLDGENVADCEPVLGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A EKL I IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEKLANIRIPKRASYIRVIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYILREREMIYDLFEAATGMRMMHNYFRIGGVAVDLPYGWIDKCLDFCDYFSPK 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ L+ N IF +R +G + E+A WG SG M+R SG WDLRK YECY E+
Sbjct: 186 ISEYEKLIVHNPIFLERVKGVGFISREEAINWGLSGPMLRASGVQWDLRKVDHYECYDEV 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ I K GD RYLVR+ EMRESVKI++Q + + G GP + + + + +
Sbjct: 246 DWQIQWQKEGDSLARYLVRIGEMRESVKILQQALRIIPG----GPYENLEARRLHQSQ-N 300
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
++ + K + + + E Y +EAPKGE G++LI + P+R KIR PG+
Sbjct: 301 LEWNDFDYQFMGKKSSPTFKLLKQEHYVRIEAPKGELGIFLIGNDSVFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L +G +LAD+ ILGS+DI+ GE+DR
Sbjct: 361 NLQILPQLVRGMKLADIMPILGSIDIIMGEIDR 393
>gi|290489804|gb|ADD31309.1| NADH-plastoquinone oxidoreductase subunit 7 protein [Ilex cornuta]
Length = 393
Score = 377 bits (969), Expect = e-102, Method: Composition-based stats.
Identities = 163/393 (41%), Positives = 223/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E+L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F +
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRLGGVAADLPHGWIDKCLDFCDYFLTG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY E
Sbjct: 186 VAEYQKLITQNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYECYDEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+++ K GD RYLVR+ EM ES+KII+Q + + G ++ P+ D
Sbjct: 246 DWEVQWQKEGDSLARYLVRISEMTESIKIIQQALEGIPGGPYENLEIRRFDRVRDPEWND 305
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
S K + + + E+Y VE PKGE G++LI D P+R KIR PG+
Sbjct: 306 FDYRFIS-----KKPSPTFELSQQELYVRVETPKGELGIFLIGDQSVFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|229838095|ref|ZP_04458254.1| NADH:ubiquinone oxidoreductase, chain C,D [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229694461|gb|EEO84508.1| NADH:ubiquinone oxidoreductase, chain C,D [Yersinia pestis biovar
Orientalis str. PEXU2]
Length = 598
Score = 377 bits (969), Expect = e-102, Method: Composition-based stats.
Identities = 150/394 (38%), Positives = 224/394 (56%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP++HG R++L+LDGE + P +G HRG EK+ E +++ +
Sbjct: 209 TENEDFMFLNLGPNHPSSHGAFRIVLQLDGEEIIDCVPDVGYHHRGAEKMGERQSWHSYI 268
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R IRV+ SE+ RI SHLL ++T D
Sbjct: 269 PYTDRIEYLGGCVNEMPYVLAVEKLAGIVVPDRVNTIRVMLSELFRINSHLLYISTFIQD 328
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GV D+P + + D P
Sbjct: 329 VGAMTPVFFAFTDRQKVYDVIEAITGFRMHPAWFRISGVAHDLPRGWERLLRDFLDWMPK 388
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R+V + ++A WG +G +R +G +D+RK +PY Y
Sbjct: 389 RLDSYVKAALQNSILKGRSVGVAAYNAKEALEWGVTGAGLRATGVEFDVRKWRPYSGYEN 448
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF++P+G +GDCYDR ++++ E+R+S++I+ QC + GP A P PP +
Sbjct: 449 FDFEVPVGNNGDCYDRVMLKVEELRQSLRILEQCYKNM----PEGPFKADHPLTTPPPKE 504
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ +E+LI HF + G +P E + +EA KG YL SDG YR +IR P Y
Sbjct: 505 RTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSY 564
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 565 AHLQQIPSVIRGSLVSDLIVYLGSIDFVMSDVDR 598
>gi|291242405|ref|XP_002741098.1| PREDICTED: NADH dehydrogenase iron-sulfur protein 2,
mitochondrial-like [Saccoglossus kowalevskii]
Length = 416
Score = 377 bits (969), Expect = e-102, Method: Composition-based stats.
Identities = 208/394 (52%), Positives = 263/394 (66%), Gaps = 55/394 (13%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+K + INFGPQHPAAHGVLRL++EL GE V R DPH+GLLHRGTEKLIE KT+ QA+
Sbjct: 78 EKDVSNLQINFGPQHPAAHGVLRLVMELSGESVVRCDPHVGLLHRGTEKLIEYKTYTQAL 137
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PYFDRLDYV+ M E + LA E+LL IE PIR + IRVL++E RIL+H++ + T A+D
Sbjct: 138 PYFDRLDYVSMMCNEQCFTLATERLLNIEAPIRAKYIRVLFAEQTRILNHIMGLCTHALD 197
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP F
Sbjct: 198 VGAMTP---------------------------------------------------FFW 206
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ +LT NRI+K R V++G + E+A +GFSGVM+RGSG WD+RK+ PYE Y
Sbjct: 207 LFEEREKMLTANRIWKLRTVDVGVITAEEAINYGFSGVMLRGSGIKWDIRKAAPYEVYDR 266
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+DFD+PIG +GDCYDRYL R+ EMR+S++II QC+N + G + D KI PP RA
Sbjct: 267 MDFDVPIGSNGDCYDRYLCRVEEMRQSLRIILQCLNEM----PEGEIKIDDNKITPPSRA 322
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+MK SMESLIHHFKL+TEGY VP G Y A+EAPKGEFGVYL+SDG ++PYRCKI+APG+
Sbjct: 323 EMKDSMESLIHHFKLFTEGYQVPPGSTYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGF 382
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHL ++ L KGH LADV AI+G++D+VFGE+DR
Sbjct: 383 AHLAGLDRLAKGHMLADVVAIIGTMDVVFGEIDR 416
>gi|251789016|ref|YP_003003737.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Dickeya
zeae Ech1591]
gi|247537637|gb|ACT06258.1| NADH dehydrogenase I, D subunit [Dickeya zeae Ech1591]
Length = 599
Score = 377 bits (969), Expect = e-102, Method: Composition-based stats.
Identities = 151/391 (38%), Positives = 227/391 (58%), Gaps = 5/391 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +PY D
Sbjct: 213 DFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCIPDIGYHHRGAEKMGERQSWHSYIPYTD 272
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R++Y+ E Y LAVEKL GIE+P R ++IRV+ SE+ RI SHLL ++T DVGA+
Sbjct: 273 RIEYLGGCVNEMPYVLAVEKLAGIEVPERVKVIRVMLSELFRINSHLLYISTFIQDVGAM 332
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P+ L+
Sbjct: 333 TPVFFAFTDRQKIYDLVEAITGYRMHPAWFRIGGVAHDLPRGWERLLREFLDWMPARLDT 392
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
N I K R+ + ++A WG +G +R +G +D+RK++PY Y DF+
Sbjct: 393 YIKAALQNSILKGRSQGVAAYNAKEALEWGVTGAGLRATGIDFDVRKARPYSGYENFDFE 452
Query: 247 IPIGK-HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+P+G DCY R ++++ E+R+S++I+ QC+ + GP A P PP +
Sbjct: 453 VPVGDGISDCYSRVMLKVEELRQSLRILEQCLKNM----PEGPFKADHPLTTPPPKERTL 508
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
+ +E+LI+HF + G +P E + +EA KG YL SDG YR +IR P +AHL
Sbjct: 509 QHIETLINHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHL 568
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Q + + +G ++D+ LGS+D V +VDR
Sbjct: 569 QQIPAVIRGCLVSDLIVYLGSIDFVMSDVDR 599
>gi|13518493|ref|NP_084851.1| NADH dehydrogenase subunit 7 [Lotus japonicus]
gi|23821905|sp|Q9BBN8|NDHH_LOTJA RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|13359034|dbj|BAB33251.1| NADH dehydrogenase 49KDa protein [Lotus japonicus]
Length = 393
Score = 377 bits (969), Expect = e-102, Method: Composition-based stats.
Identities = 161/393 (40%), Positives = 224/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E E+L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM +FR GGV D+P ++ +C+ F +
Sbjct: 126 GAQTPFFYIFREREFIYDLFEAATGMRMMHNFFRIGGVAADLPHGWIDKCFDFCNYFFTR 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G V E+ WG SG M+R SG WDLR+ YECY E
Sbjct: 186 VVEYQKLITRNPIFLERVEGVGVVGGEEVINWGLSGPMLRASGIQWDLRQVDNYECYEEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+++ K GD RYLVR+ EM ES+KII+Q + + G GP + + ++
Sbjct: 246 DWEVQWQKEGDSLARYLVRIGEMMESIKIIQQALEGIPG----GPYENLEIRCFGREKEP 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + +P E+Y VEAPKGE G++LI D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFIGKKPSPTFELPKQELYVRVEAPKGELGIFLIGDQNGFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|119493500|ref|ZP_01624167.1| NADH dehydrogenase delta subunit [Lyngbya sp. PCC 8106]
gi|119452683|gb|EAW33863.1| NADH dehydrogenase delta subunit [Lyngbya sp. PCC 8106]
Length = 394
Score = 377 bits (969), Expect = e-102, Method: Composition-based stats.
Identities = 162/397 (40%), Positives = 222/397 (55%), Gaps = 10/397 (2%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E++T + V
Sbjct: 5 ETRTEPMVLNMGPHHPSMHGVLRLIVTLDGEDVVDCEPVLGYLHRGMEKIAESRTNIMYV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R DY A M E A EKL I++P R IRV+ E+ RI +HLL + D
Sbjct: 65 PYVSRWDYAAGMFNEAVVVNAPEKLADIDVPKRASYIRVIMLELNRIANHLLWLGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSR-MHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E A+G R ++ YFR GGV D+P V+ +CD F
Sbjct: 125 VGAQTPFFYIFREREMIYDLWEAATGYRLVNNNYFRIGGVAADLPYGWVDKCRDFCDYFL 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R +GT+ E A WG SG M+R SG WDLRK YECY
Sbjct: 185 PKVDEYERLITNNPIFRRRIEGLGTITREQALNWGLSGPMLRASGVKWDLRKVDHYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+D+ GDC RY VR+ EMRESVKI+ Q ++ L G
Sbjct: 245 DFDWDVHWETAGDCLARYFVRIREMRESVKILYQALDGLPGGPYEN-------LEAQRMM 297
Query: 302 ADMKRSMESLIHHF--KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
K + F K + +P GE Y +E+ KGE G+Y++ D P+R KIRA
Sbjct: 298 GGPKSEWNDFDYQFIGKKIAPTFKIPSGEHYVRIESGKGELGIYIVGDDNAFPWRFKIRA 357
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +LQ + KG ++AD+ AILGS+DI+ G VDR
Sbjct: 358 ADFCNLQIFPEIVKGTKVADIVAILGSIDIIMGSVDR 394
>gi|56421888|ref|YP_149206.1| NADH dehydrogenase subunit D [Geobacillus kaustophilus HTA426]
gi|81346276|sp|Q5KUJ8|NUOD_GEOKA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|56381730|dbj|BAD77638.1| NADH:ubiquinone oxidoreductase subunit 7 [Geobacillus kaustophilus
HTA426]
Length = 367
Score = 377 bits (969), Expect = e-102, Method: Composition-based stats.
Identities = 158/391 (40%), Positives = 223/391 (57%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RLIL++DGEI++ P IG LHRGTEK+ E + Q +PY
Sbjct: 4 RTEEMILNVGPQHPSTHGVFRLILKIDGEIIQEATPVIGYLHRGTEKIAEGLQYTQIIPY 63
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY++ M + AVE ++GIE+P R + +RVL E+GRI SHL+ T +D+G
Sbjct: 64 TDRMDYLSAMTNNYVLCHAVETMMGIEVPERAEYLRVLAMELGRIASHLVWWGTYLLDLG 123
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A +P L+ F ERE ++ SG+R+ Y R GGV D P ++ + + L
Sbjct: 124 ATSPFLYAFREREMIINLLNELSGARLTFNYMRIGGVKWDAPDGWIDKVKQFVPYMREKL 183
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ +L+TGN IF+QR +G E+A + SGV +R +G WDLRK +PY Y D
Sbjct: 184 HGYHELVTGNEIFRQRVTGVGRYTKEEAISYSLSGVNLRSTGVKWDLRKDEPYSIYDRFD 243
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FD+P+ + GDC RY RM E+ +S++II Q + GP+ P+I+
Sbjct: 244 FDVPVREGGDCLARYECRMAEIEQSLRIIEQACEQFP---PEGPIMGKVPRII------- 293
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE + +EAP+GE G Y+ SDG +PYR K R P + +
Sbjct: 294 ------------------KAPPGETFVRIEAPRGEIGCYIASDGKKEPYRLKFRRPSFYN 335
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L KG LA+V AILGS+DIV GEVD
Sbjct: 336 LQILPKLLKGENLANVIAILGSIDIVLGEVD 366
>gi|261420758|ref|YP_003254440.1| NADH dehydrogenase subunit D [Geobacillus sp. Y412MC61]
gi|319768428|ref|YP_004133929.1| NADH dehydrogenase I, D subunit [Geobacillus sp. Y412MC52]
gi|261377215|gb|ACX79958.1| NADH dehydrogenase I, D subunit [Geobacillus sp. Y412MC61]
gi|317113294|gb|ADU95786.1| NADH dehydrogenase I, D subunit [Geobacillus sp. Y412MC52]
Length = 367
Score = 377 bits (968), Expect = e-102, Method: Composition-based stats.
Identities = 158/391 (40%), Positives = 221/391 (56%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RLIL++DGEI++ P IG LHRGTEK+ E + Q +PY
Sbjct: 4 RTEEMILNVGPQHPSTHGVFRLILKIDGEIIQEATPVIGYLHRGTEKIAEGLQYTQIIPY 63
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY++ M + AVE ++GIE+P R + +RVL E+GRI SHL+ T +D+G
Sbjct: 64 TDRMDYLSAMTNNYVLCHAVETMMGIEVPERAEYLRVLAMELGRIASHLVWWGTYLLDLG 123
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A +P L+ F ERE ++ SG+R+ Y R GGV D P ++ + + L
Sbjct: 124 ATSPFLYAFREREMIINLLNELSGARLTFNYMRIGGVKWDAPDGWIDKVKQFVPYMREKL 183
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ +L+TGN IF+QR +G E+A + SGV +R +G WDLRK +PY Y D
Sbjct: 184 HGYHELVTGNEIFRQRVTGVGRYTKEEAISYSLSGVNLRSTGVKWDLRKDEPYSIYDRFD 243
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FD+P+ GDC RY RM E+ +S+ II Q + GP+ P+I+
Sbjct: 244 FDVPVRDSGDCLARYECRMAEIEQSLCIIEQACEQFP---PEGPIMGKVPRII------- 293
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE + +EAP+GE G Y+ SDG +PYR K R P + +
Sbjct: 294 ------------------KAPPGETFVRIEAPRGEIGCYIASDGKKEPYRLKFRRPSFYN 335
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L KG LA+V AILGS+DIV GEVD
Sbjct: 336 LQILPKLLKGENLANVIAILGSIDIVLGEVD 366
>gi|298566701|gb|ADI86471.1| NADH-plastoquinone oxidoreductase subunit 7 [Eremitis sp.
Soderstrom 2182]
Length = 393
Score = 377 bits (968), Expect = e-102, Method: Composition-based stats.
Identities = 161/389 (41%), Positives = 219/389 (56%), Gaps = 5/389 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM +FR G V D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNFFRIGXVAADLPYGWIDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ DI L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVDIQQLITRNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ I K GD RYLVRM EMRES+KII+Q + ++ G GP + + +
Sbjct: 246 DWKIQWQKEGDSLARYLVRMGEMRESIKIIQQALEKIPG----GPYENLEVRRFKKTKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-XRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDNSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFG 392
+LQ + L + +L D+ ILGS+DI+ G
Sbjct: 361 NLQILPQLVQKMKLXDIMTILGSIDIIMG 389
>gi|22125527|ref|NP_668950.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Yersinia
pestis KIM 10]
gi|45442153|ref|NP_993692.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Yersinia
pestis biovar Microtus str. 91001]
gi|51596904|ref|YP_071095.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Yersinia
pseudotuberculosis IP 32953]
gi|108808040|ref|YP_651956.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Yersinia
pestis Antiqua]
gi|108812310|ref|YP_648077.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Yersinia
pestis Nepal516]
gi|145599243|ref|YP_001163319.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Yersinia
pestis Pestoides F]
gi|149365541|ref|ZP_01887576.1| NADH dehydrogenase I chain C/D [Yersinia pestis CA88-4125]
gi|153949467|ref|YP_001400435.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Yersinia
pseudotuberculosis IP 31758]
gi|165925594|ref|ZP_02221426.1| NADH-quinone oxidoreductase, C/D subunit [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165937704|ref|ZP_02226266.1| NADH-quinone oxidoreductase, C/D subunit [Yersinia pestis biovar
Orientalis str. IP275]
gi|166008272|ref|ZP_02229170.1| NADH-quinone oxidoreductase, C/D subunit [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166213850|ref|ZP_02239885.1| NADH-quinone oxidoreductase, C/D subunit [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167399692|ref|ZP_02305216.1| NADH-quinone oxidoreductase, C/D subunit [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167422320|ref|ZP_02314073.1| NADH-quinone oxidoreductase, C/D subunit [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167424577|ref|ZP_02316330.1| NADH-quinone oxidoreductase, C/D subunit [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|170023803|ref|YP_001720308.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Yersinia
pseudotuberculosis YPIII]
gi|186895985|ref|YP_001873097.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Yersinia
pseudotuberculosis PB1/+]
gi|218929639|ref|YP_002347514.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Yersinia
pestis CO92]
gi|229895294|ref|ZP_04510468.1| NADH:ubiquinone oxidoreductase, chain C,D [Yersinia pestis
Pestoides A]
gi|229898655|ref|ZP_04513800.1| NADH:ubiquinone oxidoreductase, chain C,D [Yersinia pestis biovar
Orientalis str. India 195]
gi|229902654|ref|ZP_04517771.1| NADH:ubiquinone oxidoreductase, chain C,D [Yersinia pestis
Nepal516]
gi|270490164|ref|ZP_06207238.1| NADH dehydrogenase subunit D [Yersinia pestis KIM D27]
gi|294504367|ref|YP_003568429.1| NADH dehydrogenase I chain C/D [Yersinia pestis Z176003]
gi|81639044|sp|Q669A2|NUOCD_YERPS RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|123073346|sp|Q1CHQ3|NUOCD_YERPN RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|123372335|sp|Q1C6B1|NUOCD_YERPA RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|123777025|sp|Q7CJ92|NUOCD_YERPE RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|218534240|sp|A7FGQ7|NUOCD_YERP3 RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|218534241|sp|B2K819|NUOCD_YERPB RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|218534247|sp|A4TM34|NUOCD_YERPP RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|218534346|sp|B1JGL5|NUOCD_YERPY RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|21958426|gb|AAM85201.1|AE013766_4 NADH dehydrogenase I chain C, D [Yersinia pestis KIM 10]
gi|45437017|gb|AAS62569.1| NADH dehydrogenase I chain C/D [Yersinia pestis biovar Microtus
str. 91001]
gi|51590186|emb|CAH21823.1| NADH dehydrogenase I chain C/D [Yersinia pseudotuberculosis IP
32953]
gi|108775958|gb|ABG18477.1| NADH dehydrogenase I chain C/D [Yersinia pestis Nepal516]
gi|108779953|gb|ABG14011.1| NADH dehydrogenase I chain C/D [Yersinia pestis Antiqua]
gi|115348250|emb|CAL21178.1| NADH dehydrogenase I chain C/D [Yersinia pestis CO92]
gi|145210939|gb|ABP40346.1| NADH dehydrogenase I chain C/D [Yersinia pestis Pestoides F]
gi|149291954|gb|EDM42028.1| NADH dehydrogenase I chain C/D [Yersinia pestis CA88-4125]
gi|152960962|gb|ABS48423.1| NADH-quinone oxidoreductase, C/D subunit [Yersinia
pseudotuberculosis IP 31758]
gi|165914454|gb|EDR33069.1| NADH-quinone oxidoreductase, C/D subunit [Yersinia pestis biovar
Orientalis str. IP275]
gi|165922703|gb|EDR39854.1| NADH-quinone oxidoreductase, C/D subunit [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165992654|gb|EDR44955.1| NADH-quinone oxidoreductase, C/D subunit [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166205024|gb|EDR49504.1| NADH-quinone oxidoreductase, C/D subunit [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166958826|gb|EDR55847.1| NADH-quinone oxidoreductase, C/D subunit [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167052196|gb|EDR63604.1| NADH-quinone oxidoreductase, C/D subunit [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167056459|gb|EDR66228.1| NADH-quinone oxidoreductase, C/D subunit [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169750337|gb|ACA67855.1| NADH dehydrogenase I, D subunit [Yersinia pseudotuberculosis YPIII]
gi|186699011|gb|ACC89640.1| NADH dehydrogenase I, D subunit [Yersinia pseudotuberculosis PB1/+]
gi|229680101|gb|EEO76200.1| NADH:ubiquinone oxidoreductase, chain C,D [Yersinia pestis
Nepal516]
gi|229688203|gb|EEO80274.1| NADH:ubiquinone oxidoreductase, chain C,D [Yersinia pestis biovar
Orientalis str. India 195]
gi|229701780|gb|EEO89805.1| NADH:ubiquinone oxidoreductase, chain C,D [Yersinia pestis
Pestoides A]
gi|262362644|gb|ACY59365.1| NADH dehydrogenase I chain C/D [Yersinia pestis D106004]
gi|270338668|gb|EFA49445.1| NADH dehydrogenase subunit D [Yersinia pestis KIM D27]
gi|294354826|gb|ADE65167.1| NADH dehydrogenase I chain C/D [Yersinia pestis Z176003]
gi|320014609|gb|ADV98180.1| NADH:ubiquinone oxidoreductase, chain C,D [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 598
Score = 377 bits (968), Expect = e-102, Method: Composition-based stats.
Identities = 151/394 (38%), Positives = 225/394 (57%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP++HG R++L+LDGE + P +G HRG EK+ E +++ +
Sbjct: 209 TENEDFMFLNLGPNHPSSHGAFRIVLQLDGEEIIDCVPDVGYHHRGAEKMGERQSWHSYI 268
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R IRV+ SE+ RI SHLL ++T D
Sbjct: 269 PYTDRIEYLGGCVNEMPYVLAVEKLAGIVVPDRVNTIRVMLSELFRINSHLLYISTFIQD 328
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 329 VGAMTPVFFAFTDRQKVYDVIEAITGFRMHPAWFRIGGVAHDLPRGWERLLRDFLDWMPK 388
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R+V + ++A WG +G +R +G +D+RK +PY Y
Sbjct: 389 RLDSYVKAALQNSILKGRSVGVAAYNAKEALEWGVTGAGLRATGVEFDVRKWRPYSGYEN 448
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF++P+G +GDCYDR ++++ E+R+S++I+ QC + GP A P PP +
Sbjct: 449 FDFEVPVGNNGDCYDRVMLKVEELRQSLRILEQCYKNM----PEGPFKADHPLTTPPPKE 504
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ +E+LI HF + G +P E + +EA KG YL SDG YR +IR P Y
Sbjct: 505 RTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSY 564
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 565 AHLQQIPSVIRGSLVSDLIVYLGSIDFVMSDVDR 598
>gi|78185679|ref|YP_378113.1| NAD(P)H-quinone oxidoreductase subunit H [Synechococcus sp. CC9902]
gi|123581008|sp|Q3AVZ9|NDHH_SYNS9 RecName: Full=NAD(P)H-quinone oxidoreductase subunit H; AltName:
Full=NAD(P)H dehydrogenase subunit H; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H;
AltName: Full=NDH-1 subunit H; Short=NDH-H
gi|78169973|gb|ABB27070.1| NADH dehydrogenase (ubiquinone) [Synechococcus sp. CC9902]
Length = 394
Score = 377 bits (968), Expect = e-102, Method: Composition-based stats.
Identities = 162/395 (41%), Positives = 231/395 (58%), Gaps = 6/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +NFGP HP+ HGVLRL++ LDGE V +P IG LHRG EK+ E +T + V
Sbjct: 5 ETRTEPMVVNFGPHHPSMHGVLRLVVTLDGEDVVDCEPVIGYLHRGMEKIAENRTNVMFV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R+DY A M E A EKL I +P R IRVL E+ RI +HLL + D
Sbjct: 65 PYVSRMDYAAGMFYEAVVVNAPEKLANIPVPKRASYIRVLMLELNRIANHLLWLGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSR-MHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E A+G R ++ YFR GGV D+P +E +CD F
Sbjct: 125 VGAQTPFFYIFREREMIYDLWEAATGQRLINNNYFRIGGVAADLPWGWLEKCRDFCDWFA 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R +GT++ +DA W SG M+R SG WDLRK YECY
Sbjct: 185 PKIDEYEKLITNNPIFRRRIEGLGTIETKDAINWSLSGPMLRASGVPWDLRKVDHYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+ + K GDC+ RY VR+ EMR+S+KI+RQ + + G GP + K + +
Sbjct: 245 DFDWQVAWEKEGDCFARYRVRIEEMRQSLKILRQACDMIPG----GPTENLEAKRLNEGK 300
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ + + K + +P GE+Y +E+ KGE GV+L + P+R KIRA
Sbjct: 301 GS-EAAGFDFQYVAKKVAPTFKIPNGELYTRLESGKGEIGVFLQGNNDVTPWRFKIRAAD 359
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + + KGH++AD+ AILGS+D++ G VDR
Sbjct: 360 SNNLQILPHILKGHKVADIMAILGSIDVIMGSVDR 394
>gi|146307437|ref|YP_001187902.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas mendocina ymp]
gi|218528053|sp|A4XV04|NUOCD_PSEMY RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|145575638|gb|ABP85170.1| NADH dehydrogenase subunit D / NADH dehydrogenase subunit C
[Pseudomonas mendocina ymp]
Length = 593
Score = 377 bits (968), Expect = e-102, Method: Composition-based stats.
Identities = 153/393 (38%), Positives = 225/393 (57%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +P
Sbjct: 205 EHEDYMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPEIGYHHRGAEKMAERQSWHSFIP 264
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ + Y LAVEKL GI++P R IRV+ +E RI SHLL + T DV
Sbjct: 265 YTDRIDYLGGVMNNLPYVLAVEKLAGIKVPDRVDFIRVMLAEFFRITSHLLFLGTYIQDV 324
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+TP + F +R++ E +G R+H A++R GGV D+P + + + D P
Sbjct: 325 GAMTPVFFTFTDRQRAYKVIEAITGFRLHPAWYRIGGVAHDLPRGWDKLVKEFVDWLPRR 384
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L++ N I K R + + ++A WG +G +R +G +DLRK++PY Y
Sbjct: 385 LDEYEKAALKNSILKARTIGVAQYNTKEALEWGTTGAGLRATGCDFDLRKARPYSGYEHF 444
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+F++P+ +GD YDR +VR+ EMR+S++II QC+ + GP A P PP +
Sbjct: 445 EFEVPLAANGDAYDRCMVRVEEMRQSIRIIDQCLKNM----PEGPYKADHPLTTPPPKER 500
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ +E+LI HF + G +P GE +EA KG YL SDG YR +IR P +A
Sbjct: 501 TLQHIETLITHFLQVSWGPVMPAGEALQMIEATKGINSYYLTSDGSTMSYRTRIRTPSFA 560
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ + + +G +AD+ A LGS+D V +VDR
Sbjct: 561 HLQQIPSVIRGSMVADLIAYLGSIDFVMADVDR 593
>gi|297531553|ref|YP_003672828.1| NADH dehydrogenase I, D subunit [Geobacillus sp. C56-T3]
gi|297254805|gb|ADI28251.1| NADH dehydrogenase I, D subunit [Geobacillus sp. C56-T3]
Length = 367
Score = 377 bits (968), Expect = e-102, Method: Composition-based stats.
Identities = 157/391 (40%), Positives = 222/391 (56%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RLIL++DGEI++ P IG LHRGTEK+ E + Q +PY
Sbjct: 4 RTEEMILNVGPQHPSTHGVFRLILKIDGEIIQEATPVIGYLHRGTEKIAEGLQYTQIIPY 63
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY++ M + AVE ++GIE+P R + +RVL E+GRI SHL+ T +D+G
Sbjct: 64 TDRMDYLSAMTNNYVLCHAVETMMGIEVPERAEYLRVLAMELGRIASHLVWWGTYLLDLG 123
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A +P L+ F ERE ++ SG+R+ Y R GGV D P ++ + + L
Sbjct: 124 ATSPFLYAFREREMIINLLNELSGARLTFNYMRIGGVKWDAPDGWIDKVKQFVPYMREKL 183
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
DL+TGN IF++R +G E+A + SGV +R +G WDLRK +PY Y +
Sbjct: 184 AGYHDLVTGNEIFRERVTGVGRYTKEEAISYSLSGVNLRSTGVKWDLRKDEPYSIYDRFE 243
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FD+P+ + GDC RY RM E+ +S++II Q + GP+ P+I+
Sbjct: 244 FDVPVREGGDCLARYECRMAEIEQSLRIIEQACEQFP---PEGPIMGKVPRII------- 293
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE + +EAP+GE G Y+ SDG +PYR K R P + +
Sbjct: 294 ------------------KAPPGETFVRIEAPRGEIGCYIASDGKKEPYRLKFRRPSFYN 335
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L KG LA+V AILGS+DIV GEVD
Sbjct: 336 LQILPKLLKGENLANVIAILGSIDIVLGEVD 366
>gi|323148960|ref|YP_004222514.1| NADH-plastoquinone oxidoreductase subunit 7 [Smilax china]
gi|308742651|gb|ADO33502.1| NADH-plastoquinone oxidoreductase subunit 7 [Smilax china]
Length = 393
Score = 377 bits (968), Expect = e-102, Method: Composition-based stats.
Identities = 163/396 (41%), Positives = 223/396 (56%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 VPTTRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPVLGYLHRGMEKIAENRTIIQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E A E+L +++P R IRV+ E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEAITVNAPEQLGNVQVPQRASYIRVIMLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + F ERE L +E A+G RM YFR GGV D+P ++ +CD
Sbjct: 123 ADIGAQTPFFYIFRERELLYDLFEAATGMRMMHNYFRIGGVAADLPHGWIDKCLDFCDYS 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ L + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YE Y
Sbjct: 183 LTGLVEYEKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYESY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+E D+++ GD RYLVR+ EMRES+KII+Q + + G GP + + +
Sbjct: 243 NEFDWEVQWQTEGDSLARYLVRIGEMRESIKIIQQALEGIPG----GPYENLEIRRLDGT 298
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ E K + + E+Y VEAPKGE G+YLI D P+R KIR P
Sbjct: 299 KNYKWNDFE-YGFISKKTSPNFEFSKQELYVRVEAPKGELGIYLIGDNSIFPWRWKIRPP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ + L K QLAD+ ILGS+DI+ G+ DR
Sbjct: 358 GFINLQILPQLIKRMQLADIMTILGSIDIILGDFDR 393
>gi|330503269|ref|YP_004380138.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas mendocina NK-01]
gi|328917555|gb|AEB58386.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas mendocina NK-01]
Length = 593
Score = 377 bits (968), Expect = e-102, Method: Composition-based stats.
Identities = 152/393 (38%), Positives = 225/393 (57%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +P
Sbjct: 205 EHEDYMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPEIGYHHRGAEKMAERQSWHSFIP 264
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ + Y L+VEKL GI++P R IRV+ +E RI SHLL + T DV
Sbjct: 265 YTDRIDYLGGVMNNLPYVLSVEKLAGIKVPARVDFIRVMMAEFFRITSHLLFLGTYIQDV 324
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+TP + F +R++ E +G R+H A++R GGV D+P + + + D P
Sbjct: 325 GAMTPVFFTFTDRQRAYKVIEAITGFRLHPAWYRIGGVAHDLPRGWDKLVKEFVDWLPKR 384
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L++ N I K R + + ++A WG +G +R +G +DLRK++PY Y
Sbjct: 385 LDEYEKAALKNSILKARTIGVAQYNTKEALEWGTTGAGLRATGCDFDLRKARPYSGYEHF 444
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DF++P+ +GD YDR +VR+ EMR+S++II QC+ + GP A P PP +
Sbjct: 445 DFEVPLAVNGDAYDRCMVRVEEMRQSIRIIDQCLKNM----PEGPYKADHPLTTPPPKER 500
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ +E+LI HF + G +P E + +EA KG YL SDG YR +IR P +A
Sbjct: 501 TLQHIETLITHFLQVSWGPVMPANEAFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSFA 560
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ + + +G +AD+ A LGS+D V +VDR
Sbjct: 561 HLQQIPSVIRGSMVADLIAYLGSIDFVMADVDR 593
>gi|134299889|ref|YP_001113385.1| NADH dehydrogenase subunit D [Desulfotomaculum reducens MI-1]
gi|229891389|sp|A4J657|NUOD_DESRM RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|134052589|gb|ABO50560.1| NADH dehydrogenase subunit D [Desulfotomaculum reducens MI-1]
Length = 366
Score = 377 bits (968), Expect = e-102, Method: Composition-based stats.
Identities = 161/391 (41%), Positives = 234/391 (59%), Gaps = 29/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K+ F +N GPQHP+ HGV R++L LDGE V + P G LHRG EKL+E++T+ Q +PY
Sbjct: 4 KTEEFLLNLGPQHPSTHGVFRIVLTLDGETVVKAVPVPGYLHRGIEKLLESRTYTQVIPY 63
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDY+A M Y AVEKL+ +EIP R + IRV+ E+ RI SHL+ A D+G
Sbjct: 64 TDRLDYLAGMLMNWGYVHAVEKLMEVEIPERAEYIRVIVGELSRIASHLVATGAYAADIG 123
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
LT ++ F +RE++M +E SG+R+ ++ R GGV DIP +E + D P A+
Sbjct: 124 GLTGFIYTFRDREEIMDLFEMISGARLTPSFMRIGGVAYDIPDGFMERCKKFVDYLPEAI 183
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ + L+TGN IF+ R N+ + E A SG ++R +G +DLRK +PY Y +
Sbjct: 184 KEYNTLITGNEIFQARTKNVAILSAEKAIDMSLSGPVLRATGVNYDLRKVRPYSVYERFE 243
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F++P+G GDC+DRY +R++EM +S +II+Q ++++ GP+ A PK++
Sbjct: 244 FEVPLGTKGDCFDRYYIRLLEMEQSARIIQQAMDQI----PEGPIRAKIPKMI------- 292
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
PVGE YA +E+ KG G Y++SDG KPYR R P + +
Sbjct: 293 ------------------KPPVGEAYAEIESSKGIMGTYVVSDGSTKPYRVHFRRPSFVN 334
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
L + + +G ++ADV AILGS+DIV GEVD
Sbjct: 335 LGYLNEMLRGWKIADVIAILGSIDIVLGEVD 365
>gi|170079135|ref|YP_001735773.1| NAD(P)H-quinone oxidoreductase subunit H [Synechococcus sp. PCC
7002]
gi|75527211|sp|Q8KX37|NDHH_SYNP2 RecName: Full=NAD(P)H-quinone oxidoreductase subunit H; AltName:
Full=NAD(P)H dehydrogenase subunit H; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H;
AltName: Full=NDH-1 subunit H; Short=NDH-H
gi|22652008|gb|AAN03556.1|AF381041_1 NADH dehydrogenase subunit H [Synechococcus sp. PCC 7002]
gi|169886804|gb|ACB00518.1| NADH dehydrogenase subunit H [Synechococcus sp. PCC 7002]
Length = 394
Score = 377 bits (968), Expect = e-102, Method: Composition-based stats.
Identities = 162/395 (41%), Positives = 227/395 (57%), Gaps = 6/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ IN GP HP+ HGVLRLI+ LDGE V +P IG LHRG EK+ E +T + V
Sbjct: 5 ETRTEPMVINMGPHHPSMHGVLRLIVTLDGEDVVDCEPVIGYLHRGMEKIAENRTNVMYV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R DY A M E A EKL IE+P R Q IRV+ E+ RI +HLL + D
Sbjct: 65 PYVSRWDYAAGMFNEAITVNAPEKLADIEVPKRAQYIRVIMLELNRIANHLLWLGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSR-MHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E A+G R ++ YFR GGV D+P + +CD F
Sbjct: 125 VGAQTPFFYIFREREMIYDLWEAATGMRLINNNYFRIGGVAVDLPYGWNDKCLDFCDYFD 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R +GT+ ++A W SG M+R SG WDLRK YECY
Sbjct: 185 PKVDEYEKLITNNPIFRRRVEGVGTITRDEAINWSLSGPMLRASGVKWDLRKVDHYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+D+ GDC+ RYLVR+ EMRESVKIIRQ + + G G + K + +
Sbjct: 245 DFDWDVQWETAGDCFARYLVRIREMRESVKIIRQALKGMPG----GAYENLEAKRMLEGK 300
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ + K + +P GE Y +E+ KGE G+++ + P+R KIR+
Sbjct: 301 KSEWNDFD-YQYIAKKVAPTFKIPDGEHYVRLESGKGEVGIFIQGNNNVFPWRWKIRSAD 359
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +LQ + L KG ++AD+ AILGS+D++ G VDR
Sbjct: 360 FNNLQILPHLLKGVKVADIMAILGSIDVIMGSVDR 394
>gi|298566705|gb|ADI86473.1| NADH-plastoquinone oxidoreductase subunit 7 [Lithachne pauciflora]
Length = 394
Score = 377 bits (968), Expect = e-102, Method: Composition-based stats.
Identities = 165/393 (41%), Positives = 221/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG K+ E T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIITLDGEDVIDCEPILGYLHRGXXKIAEXXTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G+ TP + F ERE + +E A+G RM YFR GGV D+P V+ +CD F
Sbjct: 126 GSQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWVDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + LLT N +F +R IG + E+A WG SG M+R SG WDLRK YE Y++
Sbjct: 186 VVEYQQLLTQNPVFLERVEGIGFISGEEAVNWGLSGPMLRASGIKWDLRKVDLYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + K GD RYLVRM EMRES+KII+Q V ++ G GP + + +
Sbjct: 246 NWKVQWQKEGDSLARYLVRMGEMRESIKIIQQAVEKIPG----GPYENLEVRRFKEAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWSDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDNSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|253989002|ref|YP_003040358.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
gi|253780452|emb|CAQ83614.1| nadh dehydrogenase i chain c/d (nadh-ubiquinone oxidoreductase chai
3/4) (nuo3/nuo4) [Photorhabdus asymbiotica]
Length = 599
Score = 377 bits (968), Expect = e-102, Method: Composition-based stats.
Identities = 152/394 (38%), Positives = 228/394 (57%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP++HG R+IL+LDGE + P +G HRG EK+ E +++ +
Sbjct: 210 TENEDFMFLNLGPNHPSSHGAFRIILQLDGEEIVDCVPDVGYHHRGAEKMGERQSWHSYI 269
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GIE+P R + IRV+ SE+ RI SHLL ++T D
Sbjct: 270 PYTDRIEYLGGCVNEMPYVLAVEKLAGIEVPDRVKTIRVMLSELFRINSHLLYISTFIQD 329
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VG +TP + F +R+K+ E +G RMH A+FR GGV D+P + D P
Sbjct: 330 VGGMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLRELLDWLPK 389
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R++ + + A WG +G +R +G A+D+RK +PY Y
Sbjct: 390 RLDSYVKAALKNSILKGRSIGVAAYNSKQALDWGTTGAGLRATGVAFDVRKWRPYSGYEN 449
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF++PIG +GDCYDR ++++ E+R+S++I+RQC++ + GP A P PP +
Sbjct: 450 FDFEVPIGNNGDCYDRVMLKVEEVRQSLRILRQCLDNM----PEGPFKADHPLTTPPPKE 505
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ +E++I+HF + G +P E + +EA KG YL SDG YR +IR P Y
Sbjct: 506 RTLQHIETMINHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSY 565
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 566 PHLQQIPSVIRGSLVSDLIVYLGSIDFVMSDVDR 599
>gi|332707246|ref|ZP_08427299.1| NADH dehydrogenase subunit D [Lyngbya majuscula 3L]
gi|332353980|gb|EGJ33467.1| NADH dehydrogenase subunit D [Lyngbya majuscula 3L]
Length = 394
Score = 377 bits (968), Expect = e-102, Method: Composition-based stats.
Identities = 168/397 (42%), Positives = 230/397 (57%), Gaps = 10/397 (2%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ IN GP HP+ HGVLRLI+ LDGE V +P IG LHRG EK+ E +T + V
Sbjct: 5 ETRTEPMVINMGPHHPSMHGVLRLIVTLDGEDVIDCEPVIGYLHRGMEKIAENRTNIMYV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R DY A M E A EKL I +P R IRV+ E+ RI +HLL + D
Sbjct: 65 PYVSRWDYAAGMFNEAITVNAPEKLADIPVPKRASYIRVIMLELNRIANHLLWLGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSR-MHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E ASG R ++ YFR GGV D+P ++ +CD F
Sbjct: 125 VGAQTPFFYIFREREMIYDLWEAASGQRLINNNYFRIGGVAVDLPYGWIDKCEDFCDYFD 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R +GT+ E+A WG SG M+RGSG WDLRK YECY
Sbjct: 185 PKVDEYERLITNNPIFRRRVEGVGTISREEAINWGLSGPMLRGSGVKWDLRKVDHYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+++ GDC+ RY+VR+ EMRESVKIIRQ + L G GP + K + R
Sbjct: 245 DFDWEVHWETGGDCFARYVVRIREMRESVKIIRQALKALPG----GPYENLEAKRMAEGR 300
Query: 302 ADMKRSMESLIHHF--KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
K + F K + +P GE Y +E+ KGE G+++I D P+R KIR
Sbjct: 301 ---KSQWNDFDYQFMGKKIAPTFKIPKGEHYVRLESGKGELGIFIIGDNNVFPWRWKIRP 357
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +LQ + + +G ++AD+ AILGS+DI+ G VDR
Sbjct: 358 ADFNNLQILPHILRGVKVADIMAILGSIDIIMGSVDR 394
>gi|167630267|ref|YP_001680766.1| proton-translocating NADH-ubiquinone oxidoreductase, chain d
[Heliobacterium modesticaldum Ice1]
gi|218534438|sp|B0TH80|NUOD_HELMI RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|167593007|gb|ABZ84755.1| proton-translocating NADH-ubiquinone oxidoreductase, chain d
[Heliobacterium modesticaldum Ice1]
Length = 364
Score = 376 bits (967), Expect = e-102, Method: Composition-based stats.
Identities = 156/391 (39%), Positives = 228/391 (58%), Gaps = 29/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+++++ +NFGPQHP+ HGVLR++LELDGE+V + P IG LHRG EK+ E +T++Q VP+
Sbjct: 2 QTQTYELNFGPQHPSTHGVLRIVLELDGEVVVKATPVIGYLHRGIEKICENRTYIQTVPF 61
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY+A M + AVEKL+G+E+P R + IRV+ E+ RI SH++ + D+G
Sbjct: 62 TDRMDYLAGMGNNLGISQAVEKLMGVEVPERAEYIRVIMCELSRIASHMICCGSLVQDLG 121
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
+T ++ +RE ++ + RA G+RM Y RPGGV QD+P V + F +
Sbjct: 122 GVTGFVFFIRDREHILELFNRACGARMTFNYIRPGGVAQDLPDGWVAQCRKFLADFKGMM 181
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
L+ GN IF+ R + + E A +G ++R SG +D+RK+ PY Y D
Sbjct: 182 ETYDKLIVGNEIFQMRLKGVAPLSAERAIAMSATGGVLRASGVDYDVRKADPYGIYDRFD 241
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F +P+G GD +DR++VRM EM +S +II Q +++L GP+ A PK +
Sbjct: 242 FKVPLGTKGDNWDRFMVRMEEMEQSARIIEQALDQL----PEGPIMAKMPKAI------- 290
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
PVGEVY +E KGE G Y++SDG KPYR R +
Sbjct: 291 ------------------KPPVGEVYHRIENAKGEIGFYVVSDGSLKPYRWHARRAAMIN 332
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ ++ LC+G ++ DV AILG+LD V GEVD
Sbjct: 333 LQLLDELCRGFKIGDVVAILGTLDPVLGEVD 363
>gi|260436159|ref|ZP_05790129.1| NAD(P)H-quinone oxidoreductase chain H [Synechococcus sp. WH 8109]
gi|260414033|gb|EEX07329.1| NAD(P)H-quinone oxidoreductase chain H [Synechococcus sp. WH 8109]
Length = 394
Score = 376 bits (967), Expect = e-102, Method: Composition-based stats.
Identities = 162/395 (41%), Positives = 230/395 (58%), Gaps = 6/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +NFGP HP+ HGVLRL++ LDGE V +P IG LHRG EK+ E +T + V
Sbjct: 5 ETRTEPMVVNFGPHHPSMHGVLRLVVTLDGEDVVDCEPVIGYLHRGMEKIAENRTNVMFV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R+DY A M E A EKL I +P R IRVL E+ RI +HLL + D
Sbjct: 65 PYVSRMDYAAGMFYEAIVVNAPEKLANIPVPKRASYIRVLMLELNRIANHLLWLGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSR-MHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E A+G R ++ YFR GGV D+P +E +CD F
Sbjct: 125 VGAQTPFFYIFREREMIYDLWEAATGQRLINNNYFRIGGVAADLPWGWLEKCRDFCDWFG 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R +GT++ EDA W SG M+R SG WDLRK YECY
Sbjct: 185 PKIDEYEKLITNNPIFRRRIEGLGTIEKEDAINWSLSGPMLRASGVPWDLRKVDHYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+ + + GDCY RY VR+ EMR+S+KI+RQ + + G GP + K + +
Sbjct: 245 DFDWQVAWEQEGDCYARYRVRIEEMRQSLKILRQACDMIPG----GPTENLEAKRLNEGK 300
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ + K + +P GE+Y +E+ KGE GV++ + P+R KIRA
Sbjct: 301 GS-DAAGFDFQYVAKKVAPTFKIPNGELYTRLESGKGEIGVFIQGNNDVTPWRFKIRAAD 359
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + + KGH++AD+ AILGS+D++ G VDR
Sbjct: 360 SNNLQILPHILKGHKVADIMAILGSIDVIMGSVDR 394
>gi|221639517|ref|YP_002525779.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Rhodobacter sphaeroides KD131]
gi|254767806|sp|B9KJI1|NUOCD_RHOSK RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|221160298|gb|ACM01278.1| NADH dehydrogenase I, D subunit [Rhodobacter sphaeroides KD131]
Length = 580
Score = 376 bits (967), Expect = e-102, Method: Composition-based stats.
Identities = 161/390 (41%), Positives = 231/390 (59%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+NFGP HP+ HGV R++L LDGE V P IG HRG EK+ E +T+ +PY D
Sbjct: 195 ELMVLNFGPHHPSTHGVFRILLGLDGEEVVWAWPDIGYHHRGAEKMAERQTWHGFIPYCD 254
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+DY+ + E Y LAVE+L GI +P R Q+IRV+ E RI++HLL T A DVGA+
Sbjct: 255 RIDYLGGVISELPYLLAVERLCGIAVPPRAQMIRVMLCEFYRIMNHLLFYGTMAQDVGAM 314
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
+P + F +REK +G+RMH A+FR GGV D+P + + D P+ L++
Sbjct: 315 SPVFYMFTDREKGHEILNAITGARMHPAFFRIGGVAMDLPNGWDAMVRGFLDWMPARLDE 374
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
++ + +F+ R V +G + A WG +G +R +G WDLRK +PY Y + +F+
Sbjct: 375 YERMVLRSELFRARTVGVGAYDTDMALTWGTTGPGLRATGCDWDLRKLRPYSGYEQFEFE 434
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+P+G+ GD +DR VR EMRES+KIIRQC+ + GPV A P PP R M++
Sbjct: 435 VPLGQRGDIFDRTRVRADEMRESLKIIRQCLENM----PEGPVKADHPLTTPPPRGAMQK 490
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+E+LI HF + G VP GE +E +G ++SDGG + YR +IR P +AHLQ
Sbjct: 491 DIETLIAHFLQSSWGTVVPAGEATGQIEGHRGLTQYSVVSDGGTQSYRTRIRTPSFAHLQ 550
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + G +AD+ A + S+D V +VDR
Sbjct: 551 MIPKIVPGMTVADLVAHIASIDFVMSDVDR 580
>gi|212712278|ref|ZP_03320406.1| hypothetical protein PROVALCAL_03364 [Providencia alcalifaciens DSM
30120]
gi|212685024|gb|EEB44552.1| hypothetical protein PROVALCAL_03364 [Providencia alcalifaciens DSM
30120]
Length = 600
Score = 376 bits (967), Expect = e-102, Method: Composition-based stats.
Identities = 156/393 (39%), Positives = 227/393 (57%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP++HG R++L+LDGE + P IG HRG EK+ E +++ +P
Sbjct: 212 ENEDFMFLNLGPNHPSSHGAFRIVLQLDGEEIINCVPDIGYHHRGAEKMGERQSWHSYIP 271
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR++Y+ E Y LAVEKL GIE+P R + IRV+ SE+ RI SHLL ++T DV
Sbjct: 272 YTDRIEYLGGCVNEMPYILAVEKLAGIEVPDRVKTIRVMMSELFRINSHLLYISTYIQDV 331
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 332 GAMTPVFFAFTDRQKVYNVIEAITGFRMHPAWFRIGGVAHDLPRGWDKLLRELLDWLPKR 391
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L N I K R+V + + E+A WG +G +R +G +D+RK +PY Y
Sbjct: 392 LESYVTSALKNSILKGRSVGVASYTKEEALAWGVTGAGLRATGVDFDVRKWRPYSGYENF 451
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FDIPI +GDCYDR ++++ EMR+S++I+ QC+ + GP A P PP +
Sbjct: 452 EFDIPIAHNGDCYDRVMIKVEEMRQSIRILEQCLKNM----PEGPFKADHPLTTPPPKER 507
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ +E+LI+HF + G +P E + VEA KG YL SDG YR +IR P Y
Sbjct: 508 TLQHIETLINHFLQVSWGPVMPANESFQMVEATKGINSYYLTSDGSTMSYRTRIRTPSYE 567
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 568 HLQQIPAVIRGSLVSDLIVYLGSIDFVMSDVDR 600
>gi|330958157|gb|EGH58417.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas syringae pv. maculicola str. ES4326]
Length = 593
Score = 376 bits (966), Expect = e-102, Method: Composition-based stats.
Identities = 156/393 (39%), Positives = 225/393 (57%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K +N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +P
Sbjct: 205 KNEDYMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIP 264
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ + Y L+VEKL GI +P R IR++ +E RI SHLL + T DV
Sbjct: 265 YTDRIDYLGGVMNNLPYVLSVEKLAGITVPDRVNAIRIMMAEFFRITSHLLFLGTYIQDV 324
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+TP + F +R+K E +G R+H A++R GGV D+P + + + D P
Sbjct: 325 GAMTPVFFTFTDRQKAYTVIEAITGFRLHPAWYRIGGVAHDLPRGWEKLVKDFVDWLPKR 384
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L++ + N I K R V + ++A WG +G +R +G +DLRK++PY Y
Sbjct: 385 LDEYTKAALQNSILKGRTVGVAAYNTKEALDWGVTGPSLRATGLDFDLRKARPYSGYENF 444
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+F++P+ HGD YDR +VR+ EMR+S+KII QC+ + GP A P PP +
Sbjct: 445 EFEVPLAVHGDAYDRCMVRVEEMRQSIKIIDQCMRNMPA----GPYKADHPLTTPPPKER 500
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ +E+LI HF + G +P E + +EA KG YL SDGG YR +IR P +
Sbjct: 501 TLQHIETLITHFLQVSWGPVMPANEAFQMIEATKGINSYYLTSDGGTMSYRTRIRTPSFP 560
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ + + KG +AD+ A LGS+D V +VDR
Sbjct: 561 HLQQIPSVIKGSMVADLIAYLGSIDFVMADVDR 593
>gi|238784998|ref|ZP_04628996.1| NADH-quinone oxidoreductase subunit C/D [Yersinia bercovieri ATCC
43970]
gi|238714114|gb|EEQ06128.1| NADH-quinone oxidoreductase subunit C/D [Yersinia bercovieri ATCC
43970]
Length = 598
Score = 376 bits (966), Expect = e-102, Method: Composition-based stats.
Identities = 152/394 (38%), Positives = 225/394 (57%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP++HG R++L+LDGE + P +G HRG EK+ E +++ +
Sbjct: 209 TENEDFMFLNLGPNHPSSHGAFRIVLQLDGEEIVDCVPDVGYHHRGAEKMGERQSWHSYI 268
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI++P R IRV+ SE+ RI SHLL ++T D
Sbjct: 269 PYTDRIEYLGGCVNEMPYVLAVEKLAGIKVPERVDTIRVMLSELFRINSHLLYISTFIQD 328
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 329 VGAMTPVFFAFTDRQKVYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLRDFLDWMPK 388
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R+V + ++A WG +G +R +G +D+RK +PY Y
Sbjct: 389 RLDSYVKAALQNSILKGRSVGVAAYNSKEALEWGVTGAGLRATGVEFDVRKWRPYSGYEN 448
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF++PIG +GDCYDR ++++ E+R+S++I+ QC + GP A P PP +
Sbjct: 449 FDFEVPIGNNGDCYDRVMLKVEELRQSLRILEQCYKNM----PEGPFKADHPLTTPPPKE 504
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ +E+LI HF + G +P E + VEA KG YL SD YR +IR P Y
Sbjct: 505 RTLQHIETLITHFLQVSWGPVMPANESFQMVEATKGINSYYLTSDASTMSYRTRIRTPSY 564
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 565 AHLQQIPSVIRGSLVSDLIVYLGSIDFVMSDVDR 598
>gi|238920565|ref|YP_002934080.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Edwardsiella ictaluri 93-146]
gi|259514702|sp|C5B8I4|NUOCD_EDWI9 RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|238870134|gb|ACR69845.1| NADH-quinone oxidoreductase subunit c/d [Edwardsiella ictaluri
93-146]
Length = 598
Score = 376 bits (966), Expect = e-102, Method: Composition-based stats.
Identities = 152/394 (38%), Positives = 230/394 (58%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+N GP HP++HG R++L+LDGE + P IG HRG EK+ E +++ +
Sbjct: 209 TANEDFMFLNLGPNHPSSHGAFRIVLQLDGEDIVDCVPDIGYHHRGAEKMGERQSWHSYI 268
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GIE+P R ++IRV+ SE+ RI SHLL ++T D
Sbjct: 269 PYTDRIEYLGGCVNEMPYVLAVEKLAGIEVPERVKVIRVMLSELFRINSHLLYISTFIQD 328
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + + P
Sbjct: 329 VGAMTPVFFAFTDRQKIYDIVEAVTGFRMHPAWFRIGGVAHDLPKGWDRLLREFLEWMPK 388
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R++ + +DA WG +G +R +G A+D+RK +PY Y
Sbjct: 389 RLDSYVKAALHNSILKGRSIGVAAYGAKDALAWGTTGAGLRATGIAFDVRKWRPYSGYEN 448
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+F++P +GDCYDR ++++ E+R+S++I++QC+ + GP A P PP +
Sbjct: 449 FEFEVPTASNGDCYDRVMLKVEEIRQSLRILQQCLKNM----PEGPFKADHPLTTPPPKE 504
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ +++LI+HF + G +P E + VEA KG YL SDGG YR +IR P Y
Sbjct: 505 RTLQHIDTLINHFLQVSWGPVMPANESFQMVEATKGINSYYLTSDGGTMSYRTRIRTPSY 564
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 565 AHLQQIPSVIRGCLVSDLIVYLGSIDFVMSDVDR 598
>gi|238788652|ref|ZP_04632444.1| NADH-quinone oxidoreductase subunit C/D [Yersinia frederiksenii
ATCC 33641]
gi|238723247|gb|EEQ14895.1| NADH-quinone oxidoreductase subunit C/D [Yersinia frederiksenii
ATCC 33641]
Length = 598
Score = 376 bits (966), Expect = e-102, Method: Composition-based stats.
Identities = 152/394 (38%), Positives = 226/394 (57%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP++HG R++L+LDGE + P +G HRG EK+ E +++ +
Sbjct: 209 TENEDFMFLNLGPNHPSSHGAFRIVLQLDGEEIVDCVPDVGYHHRGAEKMGERQSWHSYI 268
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GIE+P R + IRV+ SE+ RI SHLL ++T D
Sbjct: 269 PYTDRIEYLGGCVNEMPYVLAVEKLAGIEVPDRVKTIRVMLSELFRINSHLLYISTFIQD 328
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 329 VGAMTPVFFAFTDRQKVYDLVEAITGFRMHPAWFRIGGVAHDLPRGWERLLRDFLDWMPK 388
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R++ + ++A WG +G +R +G +D+RK +PY Y
Sbjct: 389 RLDSYVKAALQNSILKGRSIGVAAYNAKEALEWGVTGAGLRATGVEFDVRKWRPYSGYEN 448
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF++PIG +GDCYDR ++++ E+R+S++I+ QC + GP A P PP +
Sbjct: 449 FDFEVPIGNNGDCYDRVMLKVEELRQSLRILEQCYKNM----PEGPFKADHPLTTPPPKE 504
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ +E+LI HF + G +P E + VEA KG YL SD YR +IR P Y
Sbjct: 505 RTLQHIETLITHFLQVSWGPVMPANESFQMVEATKGINSYYLTSDASTMSYRTRIRTPSY 564
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 565 AHLQQIPSVIRGSLVSDLIVYLGSIDFVMSDVDR 598
>gi|269139728|ref|YP_003296429.1| NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Edwardsiella tarda
EIB202]
gi|267985389|gb|ACY85218.1| NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Edwardsiella tarda
EIB202]
gi|304559595|gb|ADM42259.1| NADH-ubiquinone oxidoreductase chain C / NADH-ubiquinone
oxidoreductase chain D [Edwardsiella tarda FL6-60]
Length = 598
Score = 376 bits (966), Expect = e-102, Method: Composition-based stats.
Identities = 153/394 (38%), Positives = 230/394 (58%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+N GP HP++HG R++L+LDGE + P IG HRG EK+ E +++ +
Sbjct: 209 TANEDFMFLNLGPNHPSSHGAFRIVLQLDGEDIVDCVPDIGYHHRGAEKMGERQSWHSYI 268
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GIE+P R ++IRV+ SE+ RI SHLL ++T D
Sbjct: 269 PYTDRIEYLGGCVNEMPYVLAVEKLAGIEVPERVKVIRVMLSELFRINSHLLYISTFIQD 328
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + + P
Sbjct: 329 VGAMTPVFFAFTDRQKIYDIVEAVTGFRMHPAWFRIGGVAHDLPKGWDRLLREFLEWMPK 388
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R+V + +DA WG +G +R +G A+D+RK +PY Y
Sbjct: 389 RLDSYVKAALHNTILKGRSVGVAAYGAKDALAWGTTGAGLRATGIAFDVRKWRPYSGYEN 448
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+F++P +GDCYDR ++++ E+R+S++I++QC+ + GP A P PP +
Sbjct: 449 FEFEVPTASNGDCYDRVMLKVEEIRQSLRILQQCLKNM----PEGPFKADHPLTTPPPKE 504
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ +++LI+HF + G +P E + VEA KG YL SDGG YR +IR P Y
Sbjct: 505 RTLQHIDTLINHFLQVSWGPVMPANESFQMVEATKGINSYYLTSDGGTMSYRTRIRTPSY 564
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 565 AHLQQIPSVIRGCLVSDLIVYLGSIDFVMSDVDR 598
>gi|116072033|ref|ZP_01469301.1| NADH dehydrogenase delta subunit [Synechococcus sp. BL107]
gi|116065656|gb|EAU71414.1| NADH dehydrogenase delta subunit [Synechococcus sp. BL107]
Length = 394
Score = 376 bits (966), Expect = e-102, Method: Composition-based stats.
Identities = 162/395 (41%), Positives = 230/395 (58%), Gaps = 6/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +NFGP HP+ HGVLRL++ LDGE V +P IG LHRG EK+ E +T + V
Sbjct: 5 ETRTEPMVVNFGPHHPSMHGVLRLVVTLDGEDVVDCEPVIGYLHRGMEKIAENRTNVMFV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R+DY A M E A EKL I +P R IRVL E+ RI +HLL + D
Sbjct: 65 PYVSRMDYAAGMFYEAVVVNAPEKLANIPVPKRASYIRVLMLELNRIANHLLWLGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSR-MHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E A+G R ++ YFR GGV D+P +E +CD F
Sbjct: 125 VGAQTPFFYIFREREMIYDLWEAATGQRLINNNYFRIGGVAADLPWGWLEKCRDFCDWFA 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R +GT++ +DA W SG M+R SG WDLRK YECY
Sbjct: 185 PKIDEYEKLITNNPIFRRRIEGLGTIETKDAINWSLSGPMLRASGVPWDLRKVDHYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+ + K GDC+ RY VR+ EMR+S+KI+RQ + + G GP + K + +
Sbjct: 245 DFDWQVAWEKEGDCFARYRVRIEEMRQSLKILRQACDMIPG----GPTENLEAKRLNEGK 300
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ + K + +P GE+Y +E+ KGE GV+L + P+R KIRA
Sbjct: 301 GS-DAAGFDFQYVAKKVAPTFKIPNGELYTRLESGKGEIGVFLQGNNDVTPWRFKIRAAD 359
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + + KGH++AD+ AILGS+D++ G VDR
Sbjct: 360 SNNLQILPHILKGHKVADIMAILGSIDVIMGSVDR 394
>gi|115605070|ref|YP_784522.1| NADH-plastoquinone oxidoreductase subunit 7 [Piper cenocladum]
gi|122164319|sp|Q06GL1|NDHH_PIPCE RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|112253799|gb|ABI14520.1| NADH-plastoquinone oxidoreductase subunit 7 [Piper cenocladum]
Length = 393
Score = 376 bits (966), Expect = e-102, Method: Composition-based stats.
Identities = 165/393 (41%), Positives = 224/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E+L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE L +E A+G RM YFR GGV D+P ++ +CD F +
Sbjct: 126 GAQTPFFYIFRERELLYDLFEAATGMRMMHNYFRIGGVATDLPYGWIDKCFDFCDYFLTG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R IG + E+A WG SG M+R SG WDLRK YECY E
Sbjct: 186 VVEYQKLITQNPIFLERVEGIGIIGGEEAINWGLSGPMLRASGIQWDLRKVDRYECYDEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++++ K GD RYLVR+ EM ES+KII+Q + + G GP + + +
Sbjct: 246 NWEVQWQKEGDSLSRYLVRIGEMTESIKIIQQALEGIPG----GPYENLEVRRFDKTKDS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G++LI D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFISKKPSPSFELSKQELYVRVEAPKGELGIFLIGDNSVFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|188026169|ref|ZP_02961127.2| hypothetical protein PROSTU_03121 [Providencia stuartii ATCC 25827]
gi|188021886|gb|EDU59926.1| hypothetical protein PROSTU_03121 [Providencia stuartii ATCC 25827]
Length = 599
Score = 376 bits (965), Expect = e-102, Method: Composition-based stats.
Identities = 154/393 (39%), Positives = 227/393 (57%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP++HG R++L+LDGE + P IG HRG EK+ E +++ +P
Sbjct: 211 ENEDFMFLNLGPNHPSSHGAFRIVLQLDGEEIVNCVPDIGYHHRGAEKMGERQSWHSYIP 270
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR++Y+ E Y LAVEKL GIE+P R + IRV+ SE+ RI SHLL ++T D
Sbjct: 271 YTDRIEYLGGCVNEMPYVLAVEKLAGIEVPDRVKTIRVMLSELFRINSHLLYISTYIQDS 330
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 331 GAMTPVFFAFTDRQKVYNVVEAITGFRMHPAWFRIGGVAHDLPRGWDKLLRELLDWLPKR 390
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L+ N I K R++ + E+A WG +G +R +G +D+RK +PY Y
Sbjct: 391 LDSYVTTALKNTILKGRSIGVAAYTKEEALAWGVTGAGLRATGLDFDVRKWRPYSGYENF 450
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FDIPI +GDCYDR ++++ E+R+S++I+ QC+ + GP A P PP +
Sbjct: 451 EFDIPIAHNGDCYDRVMIKVEEIRQSMRILEQCLKNM----PEGPFKADHPLTTPPPKER 506
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ +E+LI+HF + G +P E + +EA KG YL SDG YR +IR P YA
Sbjct: 507 TLQHIETLINHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSYA 566
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ + + KG ++D+ LGS+D V +VDR
Sbjct: 567 HLQQIPAVIKGSLVSDLIVYLGSIDFVMSDVDR 599
>gi|37526975|ref|NP_930319.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Photorhabdus luminescens subsp. laumondii TTO1]
gi|81418914|sp|Q7N2I9|NUOCD_PHOLL RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|36786408|emb|CAE15461.1| NADH dehydrogenase I chain C/D (NADH-ubiquinone oxidoreductase
chain 3/4) (NUO3/NUO4) [Photorhabdus luminescens subsp.
laumondii TTO1]
Length = 599
Score = 376 bits (965), Expect = e-102, Method: Composition-based stats.
Identities = 151/394 (38%), Positives = 228/394 (57%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP++HG R+IL+LDGE + P IG HRG EK+ E +++ +
Sbjct: 210 TENEDFMFLNLGPNHPSSHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 269
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GIE+P R + IRV+ SE+ RI SHLL ++T D
Sbjct: 270 PYTDRIEYLGGCVNEMPYVLAVEKLAGIEVPDRVKTIRVMLSELFRINSHLLYISTFIQD 329
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VG +TP + F +R+K+ E +G RMH A+FR GGV D+P + + + P
Sbjct: 330 VGGMTPVFFAFTDRQKVYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLRDFLNWMPK 389
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R + + + A WG +G +R +G A+D+RK +PY Y
Sbjct: 390 RLDSYVKAALKNSILKGRAIGVAAYNSKQALEWGTTGAGLRATGIAFDVRKWRPYSGYEN 449
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DFD+PIG +GDCYDR ++++ E+R+S++I++QC++ + GP A P PP +
Sbjct: 450 FDFDVPIGNNGDCYDRVMLKVEEVRQSLRILKQCLDNM----PEGPFKADHPLTTPPPKE 505
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ +E++I+HF + G +P E + +EA KG YL SDG YR ++R P Y
Sbjct: 506 RTLQHIETMINHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTVSYRTRVRTPSY 565
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 566 PHLQQIPSVIRGSLVSDLIVYLGSIDFVMSDVDR 599
>gi|229591255|ref|YP_002873374.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas fluorescens SBW25]
gi|259514715|sp|C3JY83|NUOCD_PSEFS RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|229363121|emb|CAY50140.1| NADH dehydrogenase I chain C/D [Pseudomonas fluorescens SBW25]
Length = 594
Score = 376 bits (965), Expect = e-102, Method: Composition-based stats.
Identities = 152/393 (38%), Positives = 223/393 (56%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +P
Sbjct: 206 TNEDYMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMAERQSWHSFIP 265
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ + Y L+VEKL GI++P R IR++ +E RI SHLL + T DV
Sbjct: 266 YTDRIDYLGGVMNNLPYVLSVEKLAGIKVPDRVDTIRIMMAEFFRITSHLLFLGTYIQDV 325
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+TP + F +R++ E +G R+H A++R GGV D+P + + D P
Sbjct: 326 GAMTPVFFTFTDRQRAYKVIEAITGFRLHPAWYRIGGVAHDLPNGWERLVKEFIDWMPKR 385
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L++ N I K R + + ++A WG +G +R +G +DLRK++PY Y
Sbjct: 386 LDEYQKAALDNSILKGRTIGVAAYNTKEALEWGVTGAGLRSTGCDFDLRKARPYSGYENF 445
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+F++P+ +GD YDR +VR+ EMR+S+KII QC+ + GP A P PP +
Sbjct: 446 EFEVPLAANGDAYDRCIVRVEEMRQSLKIIEQCMRNMPA----GPYKADHPLTTPPPKER 501
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ +E+LI HF + G +P E + +EA KG YL SDGG YR +IR P +
Sbjct: 502 TLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGGTMSYRTRIRTPSFP 561
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ + + KG +AD+ A LGS+D V +VDR
Sbjct: 562 HLQQIPSVIKGEMVADLIAYLGSIDFVMADVDR 594
>gi|317178006|dbj|BAJ55795.1| NADH dehydrogenase subunit D [Helicobacter pylori F16]
Length = 409
Score = 376 bits (965), Expect = e-102, Method: Composition-based stats.
Identities = 168/394 (42%), Positives = 242/394 (61%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +NFGPQHP++HG LRLILEL+GE + + P IG LHRG EKL E T+ + +
Sbjct: 18 EHDDNQMILNFGPQHPSSHGQLRLILELEGEKIIKATPEIGYLHRGCEKLGENMTYNEYM 77
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DRLDY + + +AYA AVE LL +EIP R Q+IR + E+ R++SH+ ++ A+D
Sbjct: 78 PTTDRLDYTSSTSNNYAYAYAVETLLNLEIPRRAQVIRTILLELNRMISHIFFISVHALD 137
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA++ L+ F+ RE + E G+R+ R GGV D+PP +E + +
Sbjct: 138 VGAMSVFLYAFKTREYGLDLMEDYCGARLTHNAIRIGGVPLDLPPNWLEGLKKFLGEMRE 197
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
I LL NRI++ R ++G V + A WG SG+M+RGSG A+D+RK +PYE Y E
Sbjct: 198 CKKLIQGLLDKNRIWRMRLEDVGVVTPKMAQSWGMSGIMLRGSGIAYDIRKEEPYELYKE 257
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LDFD+P+G +GD YDRY + M+E+ ES++II Q + + P+ A +P + +
Sbjct: 258 LDFDVPVGNYGDSYDRYCLYMLEIDESIRIIEQLIPMYAKTD--TPIMAQNPHYISAPKE 315
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
D+ +L+ HF L +G PVGEVYA E+PKGE G ++ S+G P+R KIRAP +
Sbjct: 316 DIMTQNYALMQHFVLVAQGMRPPVGEVYAPTESPKGELGFFIHSEGEPYPHRLKIRAPSF 375
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H+ A+ + G LAD ++GS + VFGEVDR
Sbjct: 376 YHIGALSDILVGQYLADAVTVIGSTNAVFGEVDR 409
>gi|126462506|ref|YP_001043620.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Rhodobacter sphaeroides ATCC 17029]
gi|218528059|sp|A3PKI2|NUOCD_RHOS1 RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|126104170|gb|ABN76848.1| NADH dehydrogenase I, D subunit [Rhodobacter sphaeroides ATCC
17029]
Length = 580
Score = 376 bits (965), Expect = e-102, Method: Composition-based stats.
Identities = 162/390 (41%), Positives = 231/390 (59%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+NFGP HP+ HGV R++L LDGE V P IG HRG EK+ E +T+ +PY D
Sbjct: 195 ELMVLNFGPHHPSTHGVFRILLGLDGEEVVWAWPDIGYHHRGAEKMAERQTWHGFIPYCD 254
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+DY+ + E Y LAVE+L GI +P R Q+IRV+ E RI++HLL T A DVGA+
Sbjct: 255 RIDYLGGVISELPYLLAVERLCGIAVPPRAQMIRVMLCEFYRIMNHLLFYGTMAQDVGAM 314
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
+P + F +REK +G+RMH A+FR GGV D+P + + D P+ L++
Sbjct: 315 SPVFYMFTDREKGHEILNAITGARMHPAFFRIGGVAMDLPTGWDAMVRGFLDWMPARLDE 374
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
++ + +F+ R V +G + A WG +G +R +G WDLRK +PY Y + DF+
Sbjct: 375 YERMVLRSELFRARTVGVGAYDTDMALTWGTTGPGLRATGCDWDLRKLRPYSGYEQFDFE 434
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+P+G+ GD +DR VR EMRES+KIIRQC+ + GPV A P PP R M++
Sbjct: 435 VPLGQRGDIFDRTRVRADEMRESLKIIRQCLGNM----PEGPVKADHPLTTPPPRGAMQK 490
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+E+LI HF + G VP GE +E +G ++SDGG + YR +IR P +AHLQ
Sbjct: 491 DIETLIAHFLQSSWGTVVPAGEATGQIEGHRGLTQYSVVSDGGTQSYRTRIRTPSFAHLQ 550
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + G +AD+ A + S+D V +VDR
Sbjct: 551 MIPKIVPGMTVADLVAHIASIDFVMSDVDR 580
>gi|271501266|ref|YP_003334291.1| NADH dehydrogenase I subunit D [Dickeya dadantii Ech586]
gi|270344821|gb|ACZ77586.1| NADH dehydrogenase I, D subunit [Dickeya dadantii Ech586]
Length = 599
Score = 376 bits (965), Expect = e-102, Method: Composition-based stats.
Identities = 153/391 (39%), Positives = 228/391 (58%), Gaps = 5/391 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +PY D
Sbjct: 213 DFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCIPDIGYHHRGAEKMGERQSWHSYIPYTD 272
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R++Y+ E Y LAVEKL GIE+P R ++IRV+ SE+ RI SHLL ++T DVGA+
Sbjct: 273 RIEYLGGCVNEMPYVLAVEKLAGIEVPERVKVIRVMLSELFRINSHLLYISTFIQDVGAM 332
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P+ L+
Sbjct: 333 TPVFFAFTDRQKIYDLVEAITGYRMHPAWFRIGGVAHDLPRGWERLLREFLDWMPARLDT 392
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
N I K R+ + ++A WG +G +R +G A+D+RK++PY Y DF+
Sbjct: 393 YIKAALQNSILKGRSQGVAAYNAKEALEWGVTGAGLRATGIAFDVRKARPYSGYENFDFE 452
Query: 247 IPIGK-HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
IP+G DCY R ++++ E+R+S++I+ QC+ + GP A P PP +
Sbjct: 453 IPVGDGVSDCYSRVMLKVEELRQSLRILEQCLKNM----PEGPFKADHPLTTPPPKERTL 508
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
+ +E+LI+HF + G +P E + +EA KG YL SDG YR +IR P +AHL
Sbjct: 509 QHIETLINHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHL 568
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Q + + +G ++D+ LGS+D V +VDR
Sbjct: 569 QQIPAVIRGCLVSDLIVYLGSIDFVMSDVDR 599
>gi|317011463|gb|ADU85210.1| NADH dehydrogenase subunit D [Helicobacter pylori SouthAfrica7]
Length = 409
Score = 376 bits (965), Expect = e-102, Method: Composition-based stats.
Identities = 168/394 (42%), Positives = 243/394 (61%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +NFGPQHP++HG LRLILEL+GE + + P IG LHRG EKL E T+ + +
Sbjct: 18 EHDDNQMVLNFGPQHPSSHGQLRLILELEGEKIIKATPEIGYLHRGCEKLGENMTYNEYM 77
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DRLDY + + +AYA AVE LL +EIP R Q+IR + E+ R++SH+ ++ A+D
Sbjct: 78 PTTDRLDYTSSTSNNYAYAYAVETLLNLEIPRRAQVIRTILLELNRMISHIFFISVHALD 137
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA++ L+ F+ RE + E G+R+ R GGV D+PP +E + + +
Sbjct: 138 VGAMSVFLYAFKTREYGLDLMEDYCGARLTHNAIRIGGVPLDLPPNWLEGLKKFLNEVRE 197
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
I LL NRI++ R N+G V + A WG SG+M+RG+G A+D+RK +PYE Y E
Sbjct: 198 CKKLIQGLLDKNRIWRMRLENVGVVTPKMAQSWGMSGIMLRGTGIAYDIRKEEPYELYKE 257
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LDFD+P+G +GD YDRY + M+E+ ES++II Q + + P+ A +P + +
Sbjct: 258 LDFDVPVGNYGDSYDRYCLYMLEIDESIRIIEQLIPMYAKTD--TPIMAQNPHYISAPKE 315
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
D+ +L+ HF L +G PVGEVYA E+PKGE G ++ S+G P+R KIRAP +
Sbjct: 316 DIMTQNYALMQHFVLVAQGMRPPVGEVYAPTESPKGELGFFIHSEGEPYPHRLKIRAPSF 375
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H+ A+ + G LAD ++GS + VFGEVDR
Sbjct: 376 YHIGALSDILVGQYLADAVTVIGSTNAVFGEVDR 409
>gi|146277730|ref|YP_001167889.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Rhodobacter sphaeroides ATCC 17025]
gi|218534335|sp|A4WT70|NUOCD_RHOS5 RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|145555971|gb|ABP70584.1| NADH dehydrogenase I, D subunit [Rhodobacter sphaeroides ATCC
17025]
Length = 580
Score = 376 bits (965), Expect = e-102, Method: Composition-based stats.
Identities = 161/390 (41%), Positives = 228/390 (58%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+NFGP HP+ HGV R++L LDGE V P IG HRG EK+ E +T+ +PY D
Sbjct: 195 ELMVLNFGPHHPSTHGVFRILLGLDGEEVVWAWPDIGYHHRGVEKMAERQTWHGFIPYCD 254
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+DY+ + E Y LAVE+L GI +P R Q+IRV+ E RI++HLL T A DVGA+
Sbjct: 255 RVDYLGGVISELPYLLAVERLCGIAVPPRAQMIRVMLCEFYRIMNHLLFYGTMAQDVGAM 314
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
+P + F +REK +G+RMH A+FR GGV D+P + + D P L++
Sbjct: 315 SPVFYMFTDREKGHEILNAITGARMHPAFFRIGGVAMDLPRGWDAMVRDFLDWMPGRLDE 374
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
++ + +F+ R V +G + A WG +G +R +G WDLRK +PY Y + DF+
Sbjct: 375 YERMVLRSELFRARTVGVGAYDTDTALTWGTTGPGLRATGCNWDLRKQRPYCGYEQFDFE 434
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+P+G+ GD +DR VR EMRES+KIIRQC+ + G V A P PP R M+
Sbjct: 435 VPLGQRGDIFDRTRVRADEMRESLKIIRQCLENM----PEGAVKADHPLTTPPPRGAMQT 490
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+E+LI HF + G VP GE +E +G ++SDGG + YR +IR P +AHLQ
Sbjct: 491 DIETLIAHFLQSSWGTVVPAGEATGQIEGHRGLTQYAIVSDGGTQSYRTRIRTPSFAHLQ 550
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + G +AD+ A + S+D V +VDR
Sbjct: 551 MIPEIVPGMTVADLVAHIASIDFVMSDVDR 580
>gi|317009947|gb|ADU80527.1| NADH dehydrogenase subunit D [Helicobacter pylori India7]
Length = 409
Score = 375 bits (964), Expect = e-102, Method: Composition-based stats.
Identities = 169/394 (42%), Positives = 242/394 (61%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +NFGPQHP++HG LRLILEL+GE + + P IG LHRG EKL E T+ + +
Sbjct: 18 EHDDNQMILNFGPQHPSSHGQLRLILELEGEKIIKATPEIGYLHRGCEKLGENMTYNEYM 77
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DRLDY + + +AYA AVE LL +EIP R Q+IR + E+ R++SH+ ++ A+D
Sbjct: 78 PTTDRLDYTSSTSNNYAYAYAVETLLNLEIPRRAQVIRTILLELNRMISHIFFISVHALD 137
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA++ L+ F+ RE + E G+R+ R GGV D+PP +E + +
Sbjct: 138 VGAMSVFLYAFKTREYGLDLMEDYCGARLTHNAIRIGGVPLDLPPNWLEGLKKFLGEMRE 197
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
I LL NRI++ R N+G V + A WG SG+M+RGSG A+D+RK +PYE Y E
Sbjct: 198 CKKLIQGLLDKNRIWRMRLENVGVVTPKMAQSWGMSGIMLRGSGIAYDIRKEEPYELYKE 257
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LDFD+P+G +GD YDRY + M+E+ ES++II Q + + P+ A +P + +
Sbjct: 258 LDFDVPVGNYGDSYDRYCLYMLEIDESIRIIEQLIPMYAKTD--TPIMAQNPHYISAPKE 315
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
D+ +L+ HF L +G PVGEVYA E+PKGE G ++ S+G P+R KIRAP +
Sbjct: 316 DIMTQNYALMQHFVLVAQGMRPPVGEVYAPTESPKGELGFFIHSEGEPYPHRLKIRAPSF 375
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H+ A+ + G LAD ++GS + VFGEVDR
Sbjct: 376 YHIGALSDILVGQYLADAVTVIGSTNAVFGEVDR 409
>gi|116749375|ref|YP_846062.1| trifunctional NADH dehydrogenase I subunit B/C/D [Syntrophobacter
fumaroxidans MPOB]
gi|218534237|sp|A0LJM5|NUBCD_SYNFM RecName: Full=NADH-quinone oxidoreductase subunit B/C/D; AltName:
Full=NADH dehydrogenase I subunit B/C/D; AltName:
Full=NDH-1 subunit B/C/D
gi|116698439|gb|ABK17627.1| NADH dehydrogenase I, D subunit [Syntrophobacter fumaroxidans MPOB]
Length = 787
Score = 375 bits (964), Expect = e-102, Method: Composition-based stats.
Identities = 161/391 (41%), Positives = 229/391 (58%), Gaps = 4/391 (1%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+N GP H + HG+LR ++ LDGE + ++ IG HRG EK+ E +T+ Q +PY
Sbjct: 401 GDRLVLNIGPSHVSTHGLLRYVVSLDGEEISDLELEIGYHHRGVEKIGERQTWHQFIPYC 460
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
R+DY+A + Y +AVE L I++P R Q+IRVL SE+ R+ +HL+ T A DVGA
Sbjct: 461 ARVDYLAGAANDLPYVMAVETLADIKVPERAQVIRVLLSELFRLSNHLVWFATYAHDVGA 520
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+TP + F ERE ++ E +G R+H ++FR GGV D+P E + FP L
Sbjct: 521 MTPNFYTFTEREMILDIVELITGGRLHPSWFRLGGVAADLPEGWKEAVDALVRIFPGRLR 580
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ L+ N IFK R +G + EDA WG SG +R G WDLR+ PY Y +F
Sbjct: 581 EYESLIRKNPIFKARTQGVGRISREDAVDWGVSGPNLRACGLEWDLRRKFPYSGYENFEF 640
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
++P GDCY RYLVR+ EMR+S++II Q + G D + V P R D
Sbjct: 641 EVPTAVEGDCYARYLVRVEEMRQSLRIIEQAAANM----PSGRHVTDDYRYVIPDRRDTL 696
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
+++ESLIHHF T G +P GE Y + E P+GE G Y++ DG YR +IR PG+A++
Sbjct: 697 KNIESLIHHFVNVTRGPRIPKGEAYVSCEIPRGEQGYYVVGDGLGYAYRMRIRGPGFANV 756
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Q M L +G +AD+ AI+GS+D + ++DR
Sbjct: 757 QVMPLLARGESIADLIAIIGSVDYILPDIDR 787
>gi|78213940|ref|YP_382719.1| NAD(P)H-quinone oxidoreductase subunit H [Synechococcus sp. CC9605]
gi|123577438|sp|Q3AGW8|NDHH_SYNSC RecName: Full=NAD(P)H-quinone oxidoreductase subunit H; AltName:
Full=NAD(P)H dehydrogenase subunit H; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H;
AltName: Full=NDH-1 subunit H; Short=NDH-H
gi|78198399|gb|ABB36164.1| NADH dehydrogenase (ubiquinone) [Synechococcus sp. CC9605]
Length = 394
Score = 375 bits (964), Expect = e-102, Method: Composition-based stats.
Identities = 162/395 (41%), Positives = 229/395 (57%), Gaps = 6/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +NFGP HP+ HGVLRL++ LDGE V +P IG LHRG EK+ E +T + V
Sbjct: 5 ETRTEPMVVNFGPHHPSMHGVLRLVVTLDGEDVVDCEPVIGYLHRGMEKIAENRTNVMFV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R+DY A M E A EKL I +P R IRVL E+ RI +HLL + D
Sbjct: 65 PYVSRMDYAAGMFYEAIVVNAPEKLANIPVPKRASYIRVLMLELNRIANHLLWLGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSR-MHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E A+G R ++ YFR GGV D+P +E +CD F
Sbjct: 125 VGAQTPFFYIFREREMIYDLWEAATGQRLINNNYFRIGGVAADLPWGWLEKCRDFCDWFG 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R +G ++ EDA W SG M+R SG WDLRK YECY
Sbjct: 185 PKIDEYEKLITNNPIFRRRIEGLGRIEKEDAINWSLSGPMLRASGVPWDLRKVDHYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+ + K GDCY RY VR+ EMR+S+KI+RQ + + G GP + K + +
Sbjct: 245 DFDWQVAWEKEGDCYARYRVRIEEMRQSLKILRQACDMIPG----GPTENLEAKRLNEGK 300
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ + K + +P GE+Y +E+ KGE GV++ + P+R KIRA
Sbjct: 301 GS-DAAGFDFQYVAKKVAPTFKIPNGELYTRLESGKGEIGVFIQGNNDVTPWRFKIRAAD 359
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + + KGH++AD+ AILGS+D++ G VDR
Sbjct: 360 SNNLQILPHILKGHKVADIMAILGSIDVIMGSVDR 394
>gi|33866829|ref|NP_898388.1| NAD(P)H-quinone oxidoreductase subunit H [Synechococcus sp. WH
8102]
gi|81573760|sp|Q7U3X8|NDHH_SYNPX RecName: Full=NAD(P)H-quinone oxidoreductase subunit H; AltName:
Full=NAD(P)H dehydrogenase subunit H; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H;
AltName: Full=NDH-1 subunit H; Short=NDH-H
gi|33639430|emb|CAE08814.1| NADH dehydrogenase I chain 7 (or D) [Synechococcus sp. WH 8102]
Length = 394
Score = 375 bits (964), Expect = e-102, Method: Composition-based stats.
Identities = 161/395 (40%), Positives = 230/395 (58%), Gaps = 6/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +NFGP HP+ HGVLRL++ LDGE V +P IG LHRG EK+ E +T + V
Sbjct: 5 ETRTEPMVVNFGPHHPSMHGVLRLVVTLDGEDVVDCEPVIGYLHRGMEKIAENRTNVMFV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R+DY A M E A EK+ I +P R IRVL E+ RI +HLL + D
Sbjct: 65 PYVSRMDYAAGMFYEAVVVNAPEKMADIPVPKRASYIRVLMLELNRIANHLLWLGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSR-MHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E A+G R ++ YFR GGV D+P +E +CD F
Sbjct: 125 VGAQTPFFYIFREREMIYDLWEAATGQRLINNNYFRIGGVAADLPWGWLEKCRDFCDWFG 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R +GT++ +DA W SG M+R SG WDLRK YECY
Sbjct: 185 PKIDEYEKLITNNPIFRRRIEGLGTIEKQDAINWSLSGPMLRASGVPWDLRKVDHYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+ + K GDCY RY VR+ EMR+S+KI+RQ + + G GP + K + +
Sbjct: 245 DFDWQVASEKEGDCYARYRVRIEEMRQSLKILRQACDMIPG----GPTENLEAKRLNEGK 300
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ + K + +P GE+Y +E+ KGE GV++ + P+R KIRA
Sbjct: 301 GS-DAAGFDFQYVAKKVAPTFKIPNGELYTRLESGKGEIGVFIQGNNDVTPWRFKIRAAD 359
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + + KGH++AD+ AILGS+D++ G VDR
Sbjct: 360 SNNLQILPHILKGHKVADIMAILGSIDVIMGSVDR 394
>gi|163847544|ref|YP_001635588.1| NADH dehydrogenase I subunit D [Chloroflexus aurantiacus J-10-fl]
gi|222525394|ref|YP_002569865.1| NADH dehydrogenase I subunit D [Chloroflexus sp. Y-400-fl]
gi|229891259|sp|A9WED7|NUOD1_CHLAA RecName: Full=NADH-quinone oxidoreductase subunit D 1; AltName:
Full=NADH dehydrogenase I subunit D 1; AltName:
Full=NDH-1 subunit D 1
gi|163668833|gb|ABY35199.1| NADH dehydrogenase I, D subunit [Chloroflexus aurantiacus J-10-fl]
gi|222449273|gb|ACM53539.1| NADH dehydrogenase I, D subunit [Chloroflexus sp. Y-400-fl]
Length = 369
Score = 375 bits (964), Expect = e-102, Method: Composition-based stats.
Identities = 167/393 (42%), Positives = 239/393 (60%), Gaps = 27/393 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+++ +N GPQHP+ HGV R+++ +DGE V + P G LHR E++ E ++LQ +PY
Sbjct: 3 QTQELQVNIGPQHPSTHGVFRMLVTVDGETVVDLKPVFGYLHRNHEQIAEANSYLQNMPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDY M HAYA+AVE+L GIE+P R + IRVL E+ RIL+H V D+G
Sbjct: 63 TDRLDYFNSMANNHAYAMAVERLAGIEVPERAEYIRVLMVELTRILNHASAVGFMINDMG 122
Query: 125 AL-TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
A TP +G EREK++ +E ASG+R+ YFR GGV +D+PPE + ++ + P+
Sbjct: 123 AWQTPLAFGMREREKILDLFEMASGARLMCNYFRFGGVVRDLPPEFIPNLRELLIALPAY 182
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
++++ LL N I QR + IG + E A +G +G ++RGSG +D+RK++PY Y
Sbjct: 183 IDELERLLRDNEILLQRAIGIGILPREVALSYGVTGPVLRGSGIPYDVRKAEPYSVYDRF 242
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DFDIP+GK GD YDR+LVR+ EMR+S +II Q + +L
Sbjct: 243 DFDIPVGKVGDVYDRFLVRIEEMRQSKRIIEQVLEQLPDAKGG----------------- 285
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
H + PVG+ YA +E+PKGE G YL+SDG KPYR K+RAP +
Sbjct: 286 ---------HINPKARQNVRPPVGDAYARIESPKGELGFYLVSDGSGKPYRYKVRAPSFI 336
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L + +C+G+++AD+ ILGS+DIV GEVDR
Sbjct: 337 NLTPLADMCRGYKVADIVVILGSIDIVMGEVDR 369
>gi|332558530|ref|ZP_08412852.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Rhodobacter sphaeroides WS8N]
gi|332276242|gb|EGJ21557.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Rhodobacter sphaeroides WS8N]
Length = 580
Score = 375 bits (964), Expect = e-102, Method: Composition-based stats.
Identities = 163/390 (41%), Positives = 232/390 (59%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+NFGP HP+ HGV R++L LDGE V P IG HRG EK+ E +T+ +PY D
Sbjct: 195 ELMVLNFGPHHPSTHGVFRILLGLDGEEVVWAWPDIGYHHRGAEKMAERQTWHGFIPYCD 254
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+DY+ + E Y LAVE+L GI +P RGQ+IRV+ E RI++HLL T A DVGA+
Sbjct: 255 RIDYLGGVISELPYLLAVERLCGIAVPARGQMIRVMLCEFYRIMNHLLFYGTMAQDVGAM 314
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
+P + F +REK +G+RMH A+FR GGV D+P + + D P+ L++
Sbjct: 315 SPVFYMFTDREKGHEILNAITGARMHPAFFRIGGVAMDLPTGWDAMVRGFLDWMPARLDE 374
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
++ + +F+ R V +G + A WG +G +R +G WDLRK +PY Y + DF+
Sbjct: 375 YERMVLRSELFRARTVGVGAYDTDMALTWGTTGPGLRATGCDWDLRKLRPYSGYEQFDFE 434
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+P+G+ GD +DR VR EMRES+KIIRQC+ + GPV A P PP R M++
Sbjct: 435 VPLGQRGDIFDRTRVRADEMRESLKIIRQCLENM----PEGPVKADHPLTTPPPRGAMQK 490
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+E+LI HF + G VP GE +E +G ++SDGG + YR +IR P +AHLQ
Sbjct: 491 DIETLIAHFLQSSWGTVVPAGEATGQIEGHRGLTQYSVVSDGGTQSYRTRIRTPSFAHLQ 550
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + G +AD+ A + S+D V +VDR
Sbjct: 551 MIPKIVPGMTVADLVAHIASIDFVMSDVDR 580
>gi|261838586|gb|ACX98352.1| NADH-ubiquinone oxidoreductase chain D [Helicobacter pylori 51]
Length = 409
Score = 375 bits (964), Expect = e-102, Method: Composition-based stats.
Identities = 167/394 (42%), Positives = 242/394 (61%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +NFGPQHP++HG LRLILEL+GE + + P IG LHRG EKL E T+ + +
Sbjct: 18 EHDDNQMILNFGPQHPSSHGQLRLILELEGEKIIKATPEIGYLHRGCEKLGENMTYNEYM 77
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DRLDY + + +AYA AVE LL +EIP R Q+IR + E+ R++SH+ ++ A+D
Sbjct: 78 PTTDRLDYTSSTSNNYAYAHAVETLLNLEIPRRAQVIRTILLELNRMISHIFFISVHALD 137
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA++ L+ F+ RE + E G+R+ R GGV D+PP +E + +
Sbjct: 138 VGAMSVFLYAFKTREYGLDLMEDYCGARLTHNAIRIGGVPLDLPPNWLEGLKKFLGEMRE 197
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
I LL NRI++ R ++G V + A WG SG+M+RGSG A+D+RK +PYE Y E
Sbjct: 198 CKKLIQGLLDKNRIWRMRLEDVGVVTPKMAQSWGMSGIMLRGSGIAYDIRKEEPYELYKE 257
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LDFD+P+G +GD YDRY + M+E+ ES++I+ Q + + P+ A +P + +
Sbjct: 258 LDFDVPVGNYGDSYDRYCLYMLEIDESIRIVEQLIPMYAKTD--TPIMAQNPHYISAPKE 315
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
D+ +L+ HF L +G PVGEVYA E+PKGE G ++ S+G P+R KIRAP +
Sbjct: 316 DIMTQNYALMQHFVLVAQGMRPPVGEVYAPTESPKGELGFFIHSEGEPYPHRLKIRAPSF 375
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H+ A+ + G LAD ++GS + VFGEVDR
Sbjct: 376 YHIGALSDILVGQYLADAVTVIGSTNAVFGEVDR 409
>gi|226315027|ref|YP_002774923.1| NADH dehydrogenase subunit D [Brevibacillus brevis NBRC 100599]
gi|226097977|dbj|BAH46419.1| NADH-quinone oxidoreductase chain D [Brevibacillus brevis NBRC
100599]
Length = 382
Score = 375 bits (963), Expect = e-102, Method: Composition-based stats.
Identities = 149/391 (38%), Positives = 220/391 (56%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RL++++DGE ++ P +G LHRGTEKL E T+ Q +PY
Sbjct: 19 RTEEMLLNVGPQHPSTHGVFRLVVKIDGETIKEAIPVMGYLHRGTEKLAENLTYTQIIPY 78
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DYV+ M + AVE ++G+EIP R Q +R++ E+ R+ SHL+ T +D+G
Sbjct: 79 TDRMDYVSAMTNNYVLCHAVETMMGLEIPERAQFLRLIAMELNRVASHLVWWGTFLLDIG 138
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A+ P L+ F +RE ++ + G+RM Y R GGV D PP V+ + L
Sbjct: 139 AMGPFLYAFRDRETILDLFNELCGARMTFNYMRVGGVKWDAPPGWVDKAKEFVQYMKKEL 198
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
N+ L+TGN IF R + IG + A + SGVM+R +G WDLRK +PY Y +
Sbjct: 199 NNYHQLVTGNEIFINRLIGIGKFDTKTALDYSLSGVMLRSTGVKWDLRKDEPYCIYDRFE 258
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FD+P GDC RY +RM E+ +S++I+ Q + + G V P+++
Sbjct: 259 FDVPTATEGDCMARYHLRMAEIEQSLRILEQALEQFPS---EGEVMGKVPRVI------- 308
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE Y +E+P+GE G Y+ S G +KP+R K R P + +
Sbjct: 309 ------------------RPPAGETYVRIESPRGEIGCYIASQGKDKPWRLKFRRPSFTN 350
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L +G L+++ AILGS+DIV GEVD
Sbjct: 351 LQILPKLLQGENLSNMVAILGSIDIVLGEVD 381
>gi|317180989|dbj|BAJ58775.1| NADH dehydrogenase subunit D [Helicobacter pylori F32]
Length = 409
Score = 375 bits (963), Expect = e-102, Method: Composition-based stats.
Identities = 168/394 (42%), Positives = 242/394 (61%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +NFGPQHP++HG LRLILEL+GE + + P IG LHRG EKL E T+ + +
Sbjct: 18 EHDDNQMILNFGPQHPSSHGQLRLILELEGEKIIKATPEIGYLHRGCEKLGENMTYNEYM 77
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DRLDY + + +AYA AVE LL +EIP R Q+IR + E+ R++SH+ ++ A+D
Sbjct: 78 PTTDRLDYTSSTSNNYAYAHAVETLLNLEIPRRAQVIRTILLELNRMISHIFFISVHALD 137
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA++ L+ F+ RE + E G+R+ R GGV D+PP +E + +
Sbjct: 138 VGAMSVFLYAFKTREYGLDLMEDYCGARLTHNAIRIGGVPLDLPPNWLEGLKKFLGEMRE 197
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
I LL NRI++ R ++G V + A WG SG+M+RGSG A+D+RK +PYE Y E
Sbjct: 198 CKKLIQGLLDKNRIWRMRLEDVGVVTPKMAQSWGMSGIMLRGSGIAYDIRKEEPYELYKE 257
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LDFD+P+G +GD YDRY + M+E+ ES++II Q + + P+ A +P + +
Sbjct: 258 LDFDVPVGNYGDSYDRYCLYMLEIDESIRIIEQLIPMYAKTD--TPIMAQNPHYISAPKE 315
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
D+ +L+ HF L +G PVGEVYA E+PKGE G ++ S+G P+R KIRAP +
Sbjct: 316 DIMTQNYALMQHFVLVAQGMRPPVGEVYAPTESPKGELGFFIHSEGEPYPHRLKIRAPSF 375
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H+ A+ + G LAD ++GS + VFGEVDR
Sbjct: 376 YHIGALSDILVGQYLADAVTVIGSTNAVFGEVDR 409
>gi|317130741|ref|YP_004097023.1| NADH dehydrogenase I, D subunit [Bacillus cellulosilyticus DSM
2522]
gi|315475689|gb|ADU32292.1| NADH dehydrogenase I, D subunit [Bacillus cellulosilyticus DSM
2522]
Length = 370
Score = 375 bits (963), Expect = e-102, Method: Composition-based stats.
Identities = 156/391 (39%), Positives = 219/391 (56%), Gaps = 25/391 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K+ + T+N GPQHP+ HGV R+++E+DGE + +V+P +G LHRG+EKL E + Q +PY
Sbjct: 4 KTETMTLNMGPQHPSTHGVFRIVVEVDGETIRKVEPVMGYLHRGSEKLAERFMYTQFIPY 63
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDY+ M + Y AVEKLLG EIP R + +RV+ E+ RI SHL+ T +D+G
Sbjct: 64 TDRLDYMNAMTNNYVYCAAVEKLLGWEIPERAEYLRVITMELNRIASHLVWWGTYLLDIG 123
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
AL+P L+ F +R+ + SG+RM Y R GGV D P ++ + + +
Sbjct: 124 ALSPFLYAFRDRDHCLDLLNEISGARMTFNYMRIGGVKWDAPDGWIDRVKEKVNVLRENI 183
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ L+TGN IF+ R + +G + E WG SG + R SG D+RK +PY Y D
Sbjct: 184 AEYDTLVTGNEIFQSRTMGVGKLTKEQVINWGLSGPLARASGVNIDIRKEEPYSIYDRFD 243
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDIP+ + GD + RY VR+ E+ ES+KII Q ++ + I + M
Sbjct: 244 FDIPVREEGDVFARYKVRIAELYESLKIIEQACEQIPEGGDI---------ITKKGKRIM 294
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE Y EA KGE GVY IS+G NKPYR K+R P + +
Sbjct: 295 M----------------IKPPAGEAYTRAEASKGEIGVYAISNGKNKPYRIKLRRPSFVN 338
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ ++ L G + D+ AI GSLDIV GEVD
Sbjct: 339 VSILQELLIGQNIQDLVAIFGSLDIVLGEVD 369
>gi|188528052|ref|YP_001910739.1| NADH dehydrogenase subunit D [Helicobacter pylori Shi470]
gi|229891398|sp|B2UV27|NUOD_HELPS RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|188144292|gb|ACD48709.1| NADH dehydrogenase subunit D [Helicobacter pylori Shi470]
gi|308062547|gb|ADO04435.1| NADH dehydrogenase subunit D [Helicobacter pylori Cuz20]
Length = 409
Score = 375 bits (963), Expect = e-102, Method: Composition-based stats.
Identities = 169/394 (42%), Positives = 242/394 (61%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +NFGPQHP++HG LRLILEL+GE + + P IG LHRG EKL E T+ + +
Sbjct: 18 EHDDNQMILNFGPQHPSSHGQLRLILELEGEKIIKATPEIGYLHRGCEKLGENMTYNEYM 77
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DRLDY + + +AYA AVE LL +EIP R Q+IR + E+ R++SH+ ++ A+D
Sbjct: 78 PTTDRLDYTSSTSNNYAYAHAVETLLNLEIPRRAQVIRTILLELNRMISHIFFISVHALD 137
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA++ L+ F+ RE + E G+R+ R GGV D+PP +E + +
Sbjct: 138 VGAMSVFLYAFKTREYGLDLMEDYCGARLTHNAIRIGGVPLDLPPNWLEGLKKFLGEMRE 197
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
I LL NRI++ R N+G V + A WG SG+M+RGSG A+D+RK +PYE Y E
Sbjct: 198 CKKLIQGLLDKNRIWRMRLENVGVVTPKMAQSWGMSGIMLRGSGIAYDIRKEEPYELYKE 257
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LDFD+P+G +GD YDRY + M+E+ ES++II Q + + P+ A +P + +
Sbjct: 258 LDFDVPVGNYGDSYDRYCLYMLEIDESIRIIEQLIPMYAKTD--TPIMAQNPHYISAPKE 315
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
D+ +L+ HF L +G PVGEVYA E+PKGE G ++ S+G P+R KIRAP +
Sbjct: 316 DIMTQNYALMQHFVLVAQGMRPPVGEVYAPTESPKGELGFFIHSEGEPYPHRLKIRAPSF 375
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H+ A+ + G LAD ++GS + VFGEVDR
Sbjct: 376 YHIGALSDILVGQYLADAVTVIGSTNAVFGEVDR 409
>gi|332674066|gb|AEE70883.1| NADH-quinone oxidoreductase subunit C/D [Helicobacter pylori 83]
Length = 409
Score = 375 bits (963), Expect = e-102, Method: Composition-based stats.
Identities = 170/394 (43%), Positives = 242/394 (61%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +NFGPQHP++HG LRLILEL+GE + + P IG LHRG EKL E T+ + +
Sbjct: 18 EHDDNQMILNFGPQHPSSHGQLRLILELEGEKIIKATPEIGYLHRGCEKLGENMTYNEYM 77
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DRLDY + + +AYA AVE LL +EIP R Q+IR + E+ R++SH+ ++ A+D
Sbjct: 78 PTTDRLDYTSSTSNNYAYAHAVETLLNLEIPRRAQVIRTILLELNRMISHIFFISVHALD 137
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA++ L+ F+ RE + E G+R+ R GGV D+PP +E + +
Sbjct: 138 VGAMSVFLYAFKTREYGLDLMEDYCGARLTHNAIRIGGVPLDLPPNWLEGLKKFLGEMRE 197
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
I LL NRI++ R N+G V + A WG SG+M+RGSG A+D+RK +PYE Y E
Sbjct: 198 CKKLIQGLLDKNRIWRMRLENVGVVTPKMAQSWGMSGIMLRGSGIAYDIRKEEPYELYKE 257
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LDFD+P+G +GD YDRY + M+E+ ES++II Q V + P+ A +P + +
Sbjct: 258 LDFDVPVGNYGDSYDRYCLYMLEIDESIRIIEQLVPMYAKTD--TPIMAQNPHYISAPKE 315
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
D+ +L+ HF L +G PVGEVYA E+PKGE G ++ S+G P+R KIRAP +
Sbjct: 316 DIMTQNYALMQHFVLVAQGMRPPVGEVYAPTESPKGELGFFIHSEGEPYPHRLKIRAPSF 375
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H+ A+ + G LAD ++GS + VFGEVDR
Sbjct: 376 YHIGALSDILVGQYLADAVTVIGSTNAVFGEVDR 409
>gi|77459827|ref|YP_349334.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas fluorescens Pf0-1]
gi|123604055|sp|Q3KA61|NUOCD_PSEPF RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|77383830|gb|ABA75343.1| NADH dehydrogenase subunit D / NADH dehydrogenase subunit C
[Pseudomonas fluorescens Pf0-1]
Length = 594
Score = 375 bits (963), Expect = e-102, Method: Composition-based stats.
Identities = 153/390 (39%), Positives = 227/390 (58%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +PY D
Sbjct: 209 DYMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMAERQSWHSFIPYTD 268
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+DY+ + Y L+VEKL GI++P + +IR++ +E RI SHLL + T DVGA+
Sbjct: 269 RIDYLGGVMNNLPYVLSVEKLAGIKVPEKVDVIRIMMAEFFRITSHLLFLGTYIQDVGAM 328
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP + F +R+K E +G R+H A++R GGV D+P + + + + P L++
Sbjct: 329 TPVFFTFTDRQKAYTVIEAITGFRLHPAWYRIGGVAHDLPRGWEKLVKDFVEWLPKRLDE 388
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ N I K R + + ++A WG +G +R +G +DLRK++PY Y +F+
Sbjct: 389 YTKAALQNSILKGRTIGVAQYNTKEALEWGVTGAGLRSTGCDFDLRKARPYSGYENFEFE 448
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+P+ +GD YDR +VR+ EMR+SVKII QC+ + GP A P PP + +
Sbjct: 449 VPLAANGDAYDRCMVRVEEMRQSVKIIDQCLRNM----PEGPYKADHPLTTPPPKERTLQ 504
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+E+LI HF + G +P E + +EA KG YL SDGG YR +IR P +AHLQ
Sbjct: 505 HIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGGTMSYRTRIRTPSFAHLQ 564
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + KG +AD+ A LGS+D V +VDR
Sbjct: 565 QIPSVIKGSMVADLIAYLGSIDFVMADVDR 594
>gi|254414966|ref|ZP_05028729.1| Respiratory-chain NADH dehydrogenase, 49 Kd subunit subfamily
[Microcoleus chthonoplastes PCC 7420]
gi|196178113|gb|EDX73114.1| Respiratory-chain NADH dehydrogenase, 49 Kd subunit subfamily
[Microcoleus chthonoplastes PCC 7420]
Length = 384
Score = 375 bits (963), Expect = e-102, Method: Composition-based stats.
Identities = 169/389 (43%), Positives = 226/389 (58%), Gaps = 6/389 (1%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
+N GP HP+ HGVLRLI+ LDGE V +P IG LHRG EK+ E +T + VPY R
Sbjct: 1 MVLNLGPHHPSMHGVLRLIVTLDGEDVIDCEPVIGYLHRGMEKIAENRTNIMYVPYVSRW 60
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
DY A M E A EKL IE+P R IRV+ E+ RI +HLL + DVGA TP
Sbjct: 61 DYAAGMFNEAITVNAPEKLADIEVPKRASYIRVIMLELNRIANHLLWLGPFLADVGAQTP 120
Query: 129 PLWGFEEREKLMVFYERASGSR-MHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
+ F ERE + +E ASG R ++ YFR GGV DIP V+ +CD F +++
Sbjct: 121 FFYIFRERELIYDLWEAASGQRLINNNYFRIGGVAVDIPYGWVDKCEDFCDYFAPKVDEY 180
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
L+T N IF++R +GT+ ++A WG SG M+RGSG WDLRK YECY + D+DI
Sbjct: 181 ERLITNNPIFRRRVEGVGTITRDEAINWGLSGPMLRGSGVKWDLRKVDHYECYDDFDWDI 240
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
GDC RYLVR+ EMRES+KIIRQ + L G GP + K + +
Sbjct: 241 HWETAGDCLARYLVRIREMRESLKIIRQALKGLPG----GPYENLEAKRIAEGKKSKWND 296
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
E K + +P GE Y +E+ KGE G+++I D P+R KIR P + +LQ
Sbjct: 297 FE-YQFSGKKIPPTFKIPQGEHYVRLESGKGELGIFIIGDDNIFPWRWKIRPPDFNNLQI 355
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + +G ++AD+ AILGS+D++ G VDR
Sbjct: 356 VPHILRGVKVADIMAILGSVDVIMGSVDR 384
>gi|312961688|ref|ZP_07776186.1| NADH-quinone oxidoreductase subunit C/D [Pseudomonas fluorescens
WH6]
gi|311283947|gb|EFQ62530.1| NADH-quinone oxidoreductase subunit C/D [Pseudomonas fluorescens
WH6]
Length = 576
Score = 375 bits (962), Expect = e-102, Method: Composition-based stats.
Identities = 153/393 (38%), Positives = 224/393 (56%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +P
Sbjct: 188 TNEDYMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMAERQSWHSFIP 247
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ + Y L+VEKL GI++P R IR++ +E RI SHLL + T DV
Sbjct: 248 YTDRIDYLGGVMNNLPYVLSVEKLAGIKVPDRVDTIRIMMAEFFRITSHLLFLGTYIQDV 307
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+TP + F +R++ E +G R+H A++R GGV D+P + + D P
Sbjct: 308 GAMTPVFFTFTDRQRAYKVIEAITGFRLHPAWYRIGGVAHDLPNGWERLVKEFIDWMPKR 367
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L++ N I K R + + ++A WG +G +R +G +DLRK++PY Y
Sbjct: 368 LDEYQKAALDNSILKGRTIGVAQYNTKEALEWGVTGAGLRSTGCDFDLRKARPYSGYENF 427
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+F++P+ +GD YDR +VR+ EMR+S+KII QC+ + GP A P PP +
Sbjct: 428 EFEVPLAANGDAYDRCIVRVEEMRQSLKIIEQCMRNMPA----GPYKADHPLTTPPPKER 483
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ +E+LI HF + G +P E + +EA KG YL SDGG YR +IR P +A
Sbjct: 484 TLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGGTMSYRTRIRTPSFA 543
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ + + KG +AD+ A LGS+D V +VDR
Sbjct: 544 HLQQIPSVIKGEMVADLIAYLGSIDFVMADVDR 576
>gi|78042696|ref|YP_360254.1| NADH dehydrogenase subunit D [Carboxydothermus hydrogenoformans
Z-2901]
gi|123576174|sp|Q3AC80|NUOD_CARHZ RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|77994811|gb|ABB13710.1| proton-translocating NADH-quinone oxidoreductase, D subunit
[Carboxydothermus hydrogenoformans Z-2901]
Length = 365
Score = 375 bits (962), Expect = e-102, Method: Composition-based stats.
Identities = 156/391 (39%), Positives = 231/391 (59%), Gaps = 29/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K++ +IN GPQHP+ HGV R+IL+LDGE + +P +G LHRG EKL E +T+ Q +PY
Sbjct: 3 KTQEISINVGPQHPSTHGVFRIILKLDGETIVDAEPVVGYLHRGIEKLAEDRTYTQVIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY+ M+ Y A+EKL+GIE+P R + IRV+ +E+ RI SH + + + ++D+G
Sbjct: 63 TDRMDYLGAMSYNLGYVQAIEKLMGIEVPERAEFIRVIATELSRIASHHVFLASMSLDMG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
+ T ++ F +RE ++ E +GSRM ++ R GGV D+P +E + +
Sbjct: 123 SYTGWMYPFRDRELVLELLEMLTGSRMTFSFMRIGGVADDLPEGFIEKAKEYLPKILDGV 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
++ LL GN IF R + V +E A WG+ GV +R SG +DLRK++PY Y +
Sbjct: 183 DEEEGLLAGNEIFLARTKGLAPVSVEKALAWGWGGVNLRASGYKFDLRKNRPYSVYDRFE 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDIP G +GDC+DR+ +R+ E+R+SVKII Q + + GP+ A PK++
Sbjct: 243 FDIPTGANGDCWDRFYLRLAEIRQSVKIIEQALEMI----PEGPIMAKVPKVI------- 291
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
PVGEVY VEAPKG G Y++SDG KPYR +R P + +
Sbjct: 292 ------------------KPPVGEVYHEVEAPKGILGYYVVSDGSTKPYRMHVRRPSFIN 333
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ ++ L G +LAD I S+D+V G+VD
Sbjct: 334 IGMLKELLIGTKLADFITIFASIDVVLGDVD 364
>gi|295697742|ref|YP_003590980.1| NADH dehydrogenase I, D subunit [Bacillus tusciae DSM 2912]
gi|295413344|gb|ADG07836.1| NADH dehydrogenase I, D subunit [Bacillus tusciae DSM 2912]
Length = 367
Score = 375 bits (962), Expect = e-102, Method: Composition-based stats.
Identities = 159/395 (40%), Positives = 235/395 (59%), Gaps = 29/395 (7%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M ++ +N GPQHP+ HGVL+++++LDGE + DP IG LHRGTEKL E + Q
Sbjct: 1 MADTRTEEMLMNVGPQHPSTHGVLQVVVKLDGETIVEADPVIGYLHRGTEKLAEDLQYTQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY DR+DY+A M +A AVE+ + +E+P R + +RV+ E+ RI SHLL + T
Sbjct: 61 IIPYTDRMDYLAAMLNNYALVHAVEEAMDLEVPERAEYLRVIVMELNRIASHLLFIGTYL 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+D+GA++P L+ F++RE+++ + SG+R+ Y R GGV D PP ++ + +
Sbjct: 121 LDLGAMSPFLYAFQDRERIVQLFNEISGARLTYNYMRIGGVKWDAPPGWIDKVREFVPHM 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+L + DL+TGN IF R IG + A + SGV +R +G WDLRK++PY Y
Sbjct: 181 RESLKMLDDLITGNEIFLNRVRGIGAYDADTAIAYSLSGVNLRCTGLKWDLRKNRPYSVY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
DF+IP+G+HGDCYDRY++ + EM +S++I+ Q ++ GPV PK V
Sbjct: 241 DRFDFEIPVGEHGDCYDRYILHLREMEQSLRIVEQACEQIPD----GPVMGKAPKFV--- 293
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
P GE Y+A+E +GE GVY +SDG +KPYR K R P
Sbjct: 294 ----------------------RPPAGEYYSAIEGARGELGVYFVSDGKDKPYRVKFRRP 331
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ +LQ + L +G +A++ AILG++DIV GEVD
Sbjct: 332 SFVNLQLLPSLLQGQSMANLIAILGAVDIVLGEVD 366
>gi|297585414|ref|YP_003701194.1| NADH dehydrogenase I subunit D [Bacillus selenitireducens MLS10]
gi|297143871|gb|ADI00629.1| NADH dehydrogenase I, D subunit [Bacillus selenitireducens MLS10]
Length = 371
Score = 375 bits (962), Expect = e-101, Method: Composition-based stats.
Identities = 153/394 (38%), Positives = 221/394 (56%), Gaps = 26/394 (6%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
++ K+ S T+N GPQHP+ HGV RL LE+DGE +++ P +G LHRG+EKL E + Q
Sbjct: 3 NELKTESMTLNMGPQHPSTHGVFRLQLEVDGETIQKATPIMGYLHRGSEKLAEGFLYTQF 62
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+PY DRLDY+ M + Y +EKLL E+P R + +RV+ E+ RI SHL+ T +
Sbjct: 63 IPYTDRLDYMNAMTNNYVYCQTIEKLLDWEVPERAEYLRVITMELNRIASHLVWWGTYLL 122
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D+GA++P L+ F +RE ++ SG+RM Y R GGV D P ++++ +
Sbjct: 123 DIGAMSPFLYAFRDRETILDRLNEISGARMTFNYHRIGGVKWDAPEGWIDNVLETVEELK 182
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L++GN +F+ R + +G + E WG SG + RGSG D+RK++PY Y
Sbjct: 183 HNISEFDTLVSGNEVFQARTIGVGVLSKEKVLNWGLSGPLARGSGVEVDVRKTEPYSVYD 242
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DFD+P+ + GD Y RY VR+ EM ES+KII Q L
Sbjct: 243 HFDFDVPVEQEGDVYARYKVRIREMHESLKIIEQACKNLPEG------------------ 284
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+IH P GEVY EA KGE GVY IS+G NKPYR K+R P
Sbjct: 285 --------DIIHKKGKKIMMIKPPEGEVYTRAEASKGEIGVYAISNGKNKPYRVKLRRPS 336
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ ++ ++ + G + ++ AI GSLD+V GEVD
Sbjct: 337 FVNVSILQDMLIGESIQNLVAIFGSLDVVLGEVD 370
>gi|56752357|ref|YP_173058.1| NAD(P)H-quinone oxidoreductase subunit H [Synechococcus elongatus
PCC 6301]
gi|81300552|ref|YP_400760.1| NAD(P)H-quinone oxidoreductase subunit H [Synechococcus elongatus
PCC 7942]
gi|81676804|sp|Q5MZI2|NDHH_SYNP6 RecName: Full=NAD(P)H-quinone oxidoreductase subunit H; AltName:
Full=NAD(P)H dehydrogenase subunit H; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H;
AltName: Full=NDH-1 subunit H; Short=NDH-H
gi|123556660|sp|Q31ME6|NDHH_SYNE7 RecName: Full=NAD(P)H-quinone oxidoreductase subunit H; AltName:
Full=NAD(P)H dehydrogenase subunit H; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H;
AltName: Full=NDH-1 subunit H; Short=NDH-H
gi|56687316|dbj|BAD80538.1| NADH dehydrogenase subunit 7 [Synechococcus elongatus PCC 6301]
gi|81169433|gb|ABB57773.1| NADH dehydrogenase (ubiquinone) [Synechococcus elongatus PCC 7942]
Length = 394
Score = 375 bits (962), Expect = e-101, Method: Composition-based stats.
Identities = 160/395 (40%), Positives = 226/395 (57%), Gaps = 6/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +N GP HP+ HGVLRLI+ LDGE V +P IG LHRG EK+ E ++ + V
Sbjct: 5 ETRTEPMVLNMGPHHPSMHGVLRLIVTLDGENVIDCEPVIGYLHRGMEKIAENRSNVMFV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R DY A M E A EKL I +P R IRV+ E+ RI +HLL + D
Sbjct: 65 PYVSRWDYAAGMFNEAITVNAPEKLANIPVPKRASYIRVIMLELNRIANHLLWLGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSR-MHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E A+G R ++ YFR GGV D+P +E +CD F
Sbjct: 125 VGAQTPFFYIFRERELIYDLWEAATGQRLINNNYFRIGGVAADLPYGWLEKCIDFCDYFQ 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+ +++ L+T N IF++R IG + E+A W SG M+RGSG WDLR+ YECY
Sbjct: 185 AKVDEYERLITDNPIFRRRVEGIGVISREEALNWSLSGPMLRGSGVKWDLRRVDHYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+D+ + GDC+ RY VR+ EMRES+KIIRQ + G GP + + + +
Sbjct: 245 DFDWDVITAEEGDCFARYRVRVQEMRESLKIIRQACAGIPG----GPYENLEARRMAEGK 300
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ K + +P GE Y +E+ KGE GV++ P+R KIRAP
Sbjct: 301 KSEWYG-PDYQYVSKKVAPTFKIPAGEHYVRLESGKGELGVFIQGADDICPWRFKIRAPD 359
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +LQ + L +G ++AD+ AILGS+D++ G VDR
Sbjct: 360 FNNLQILPQLLQGVKVADIMAILGSIDVIMGSVDR 394
>gi|15645877|ref|NP_208055.1| NADH dehydrogenase subunit D [Helicobacter pylori 26695]
gi|81555858|sp|O25853|NUOD_HELPY RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|2314430|gb|AAD08309.1| NADH-ubiquinone oxidoreductase, NQO4 subunit (NQO4) [Helicobacter
pylori 26695]
Length = 409
Score = 374 bits (961), Expect = e-101, Method: Composition-based stats.
Identities = 169/394 (42%), Positives = 242/394 (61%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +NFGPQHP++HG LRLILEL+GE + + P IG LHRG EKL E T+ + +
Sbjct: 18 EHDDNQMILNFGPQHPSSHGQLRLILELEGEKIIKATPEIGYLHRGCEKLGENMTYNEYM 77
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DRLDY + + +AYA AVE LL +EIP R Q+IR + E+ R++SH+ ++ A+D
Sbjct: 78 PTTDRLDYTSSTSNNYAYAYAVETLLNLEIPRRAQVIRTILLELNRMISHIFFISVHALD 137
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA++ L+ F+ RE + E G+R+ R GGV D+PP +E + +
Sbjct: 138 VGAMSVFLYAFKTREYGLDLMEDYCGARLTHNAIRIGGVPLDLPPNWLEGLKKFLGEMRE 197
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
I LL NRI++ R N+G V + A WG SG+M+RG+G A+D+RK +PYE Y E
Sbjct: 198 CKKLIQGLLDKNRIWRMRLENVGVVTQKMAQSWGMSGIMLRGTGIAYDIRKEEPYELYKE 257
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LDFD+P+G +GD YDRY + M+E+ ESV+II Q + + P+ A +P + +
Sbjct: 258 LDFDVPVGNYGDSYDRYCLYMLEIDESVRIIEQLIPMYAKTD--TPIMAQNPHYISAPKE 315
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
D+ +L+ HF L +G PVGEVYA E+PKGE G ++ S+G P+R KIRAP +
Sbjct: 316 DIMTQNYALMQHFVLVAQGMRPPVGEVYAPTESPKGELGFFIHSEGEPYPHRLKIRAPSF 375
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H+ A+ + G LAD ++GS + VFGEVDR
Sbjct: 376 YHIGALSDILVGQYLADAVTVIGSTNAVFGEVDR 409
>gi|238798406|ref|ZP_04641887.1| NADH-quinone oxidoreductase subunit C/D [Yersinia mollaretii ATCC
43969]
gi|238717720|gb|EEQ09555.1| NADH-quinone oxidoreductase subunit C/D [Yersinia mollaretii ATCC
43969]
Length = 598
Score = 374 bits (961), Expect = e-101, Method: Composition-based stats.
Identities = 152/394 (38%), Positives = 225/394 (57%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP++HG R++L+LDGE + P +G HRG EK+ E +++ +
Sbjct: 209 TENEDFMFLNLGPNHPSSHGAFRIVLQLDGEEIVDCVPDVGYHHRGAEKMGERQSWHSYI 268
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI++P R IRV+ SE+ RI SHLL ++T D
Sbjct: 269 PYTDRIEYLGGCVNEMPYVLAVEKLAGIKVPARVDTIRVMLSELFRINSHLLYISTFIQD 328
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 329 VGAMTPVFFAFTDRQKVYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLRDFLDWMPK 388
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R+V + ++A WG +G +R +G +D+RK +PY Y
Sbjct: 389 RLDSYVKAALQNSILKGRSVGVAAYNSKEALEWGVTGAGLRATGVEFDVRKWRPYSGYEN 448
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF++PIG +GDCYDR ++++ E+R+S++I+ QC + GP A P PP +
Sbjct: 449 FDFEVPIGNNGDCYDRVMLKVEELRQSLRILEQCYKNM----PEGPFKADHPLTTPPPKE 504
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ +E+LI HF + G +P E + VEA KG YL SD YR +IR P Y
Sbjct: 505 RTLQHIETLITHFLQVSWGPVMPANESFQMVEATKGINSYYLTSDASTMSYRTRIRTPSY 564
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 565 AHLQQIPSVIRGSLVSDLIVYLGSIDFVMSDVDR 598
>gi|238927266|ref|ZP_04659026.1| NADH dehydrogenase (quinone) [Selenomonas flueggei ATCC 43531]
gi|238884853|gb|EEQ48491.1| NADH dehydrogenase (quinone) [Selenomonas flueggei ATCC 43531]
Length = 366
Score = 374 bits (961), Expect = e-101, Method: Composition-based stats.
Identities = 156/391 (39%), Positives = 226/391 (57%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ ++T+N GPQHP+ HGVL++ LELDGE + + P +G LHRG EKL+E +T+ Q +PY
Sbjct: 3 RTETYTLNMGPQHPSTHGVLQVQLELDGERIVKATPIMGYLHRGIEKLLEARTYAQGLPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDY++ MN YA AVE+L GIE R + IRV+ +E+ RI SHL+ + T A D+G
Sbjct: 63 TDRLDYISAMNNNFGYARAVEELAGIETTPRAEYIRVIMAELNRINSHLIFIGTLANDLG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A T L+ F +REK++ + G+R Y R GGV +D+ PE E I + DS P L
Sbjct: 123 ASTGMLYCFRDREKILDIFNLVCGARQTFHYIRIGGVKEDLSPEAAEMIRAFVDSVPDFL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ + LLTGN IF +R + E+A +G +R +G A+DLRK Y Y + D
Sbjct: 183 AEYNRLLTGNEIFVRRIRGTSPMTTEEALACSMTGPNLRATGLAFDLRKVDGYSVYDDFD 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDIP+G+HGD +DRY+V++ E+ ES KI+RQ ++ L
Sbjct: 243 FDIPVGEHGDNWDRYMVKLAEIAESAKIVRQAIDGLPEG--------------------- 281
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K + P GEV++ E +GE G Y++SDG KPYR IR P + +
Sbjct: 282 -------DFMAKKVPKVIKPPKGEVFSRTEGTRGELGFYIVSDGTTKPYRIHIRRPSFVN 334
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+Q ++ +C+G + D A S+D + GEVD
Sbjct: 335 MQGLDPMCRGMLIGDSVAAYSSIDPIMGEVD 365
>gi|258593444|emb|CBE69783.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
(NDH-1, chain D) [NC10 bacterium 'Dutch sediment']
Length = 377
Score = 374 bits (961), Expect = e-101, Method: Composition-based stats.
Identities = 159/390 (40%), Positives = 229/390 (58%), Gaps = 29/390 (7%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GPQHP+ HGVLRL+L+LDGE+V + P+IG LHR EK+ E + + Q +PY D
Sbjct: 17 EEMYVNMGPQHPSTHGVLRLLLKLDGEVVTEIIPYIGYLHRCHEKIGENRIYTQIIPYTD 76
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDY+A M + L +E+ LGI +P R + +RV+ E+ RI SHL+ + T +D+G
Sbjct: 77 RLDYLASMYNNWGFVLTMERHLGIAVPERAEYMRVILGELQRIASHLIWLGTFGLDLGNF 136
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
T L+ F EREK++ +E G R++ A++R GG+ D+P V D + F L +
Sbjct: 137 TIFLYCFREREKILDLFESVCGQRLNYAFYRIGGMPLDLPDSFVADCKAFLAWFKPRLPE 196
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
++T N IF++R +G + + A + SG ++RGSG WDLR+ PY Y +FD
Sbjct: 197 YDAVMTDNIIFQKRVQGLGILDPKTAINYAISGPVLRGSGIKWDLRRDDPYSIYDRFEFD 256
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
IP+G GD +DRY+VR +EM ESVKII Q + L G + A PK +
Sbjct: 257 IPVGTSGDVWDRYMVRRIEMEESVKIIEQALQGL----PSGEIIAKMPKKL--------- 303
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
PVG++Y+ VE P+GE G Y++SDG KPYR K+R+P + +L
Sbjct: 304 ----------------KPPVGDIYSRVETPRGELGFYIVSDGSEKPYRYKVRSPTFVNLS 347
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + G+ +AD+ AILGS DIV GEVDR
Sbjct: 348 VLPVMGTGYLVADLVAILGSFDIVLGEVDR 377
>gi|282600310|ref|ZP_05973799.2| NADH-quinone oxidoreductase, C/D subunit [Providencia rustigianii
DSM 4541]
gi|282565808|gb|EFB71343.1| NADH-quinone oxidoreductase, C/D subunit [Providencia rustigianii
DSM 4541]
Length = 600
Score = 374 bits (961), Expect = e-101, Method: Composition-based stats.
Identities = 155/393 (39%), Positives = 228/393 (58%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP++HG R++L+LDGE + P IG HRG EK+ E +++ +P
Sbjct: 212 ENEDFMFLNLGPNHPSSHGAFRIVLQLDGEEIINCVPDIGYHHRGAEKMGERQSWHSFIP 271
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR++Y+ E Y LAVEKL GIE+P R + IRV+ SE+ RI SHLL ++T DV
Sbjct: 272 YTDRIEYLGGCVNEMPYILAVEKLAGIEVPDRVKTIRVMMSELFRINSHLLYISTYIQDV 331
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 332 GAMTPVFFAFTDRQKVYNVVEAITGFRMHPAWFRIGGVAHDLPRGWDKLLRELLDWLPKR 391
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L N I K R++ + + E+A WG +G +R +G +D+RK++PY Y
Sbjct: 392 LESYVTSALKNSILKGRSIGVASYTKEEALAWGVTGAGLRATGVDFDVRKARPYSGYENF 451
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FDIPI +GDCYDR ++++ EMR+S++I+ QC+ + GP A P PP +
Sbjct: 452 EFDIPIAHNGDCYDRVMIKVEEMRQSIRILEQCLKNM----PEGPFKADHPLTTPPPKER 507
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ +E+LI+HF + G +P E + VEA KG YL SDG YR +IR P Y
Sbjct: 508 TLQHIETLINHFLQVSWGPVMPANESFQMVEATKGINSYYLTSDGSTMSYRTRIRTPSYE 567
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 568 HLQQIPAVIRGSLVSDLIVYLGSIDFVMSDVDR 600
>gi|297380443|gb|ADI35330.1| NADH dehydrogenase I, D subunit [Helicobacter pylori v225d]
Length = 409
Score = 374 bits (961), Expect = e-101, Method: Composition-based stats.
Identities = 168/394 (42%), Positives = 242/394 (61%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +NFGPQHP++HG LRLILEL+GE + + P IG LHRG EKL E T+ + +
Sbjct: 18 EHDDNQMILNFGPQHPSSHGQLRLILELEGEKIIKATPEIGYLHRGCEKLGENMTYNEYM 77
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DRLDY + + +AYA AVE LL +EIP R Q+IR + E+ R++SH+ ++ A+D
Sbjct: 78 PTTDRLDYTSSTSNNYAYAYAVETLLNLEIPRRAQVIRTILLELNRMISHIFFISVHALD 137
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA++ L+ F+ RE + E G+R+ R GGV D+PP +E + +
Sbjct: 138 VGAMSVFLYAFKTREYGLDLMEDYCGARLTHNAIRIGGVPLDLPPNWLEGLKKFLGEMRE 197
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
I LL NRI++ R N+G V + A WG SG+M+RGSG A+D+RK +PYE Y E
Sbjct: 198 CKKLIQGLLDKNRIWRMRLENVGVVTPKMAQSWGMSGIMLRGSGIAYDIRKEEPYELYKE 257
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LDFD+P+G +GD YDRY + M+E+ ES++II Q + + P+ A +P + +
Sbjct: 258 LDFDVPVGNYGDSYDRYCLYMLEIDESIRIIEQLIPMYAKTD--TPIMAQNPHYISAPKE 315
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
D+ +L+ HF L +G P+GEVYA E+PKGE G ++ S+G P+R KIRAP +
Sbjct: 316 DIMTQNYALMQHFVLVAQGMRPPIGEVYAPTESPKGELGFFIHSEGEPYPHRLKIRAPSF 375
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H+ A+ + G LAD ++GS + VFGEVDR
Sbjct: 376 YHIGALSDILVGQYLADAVTVIGSTNAVFGEVDR 409
>gi|123965436|ref|YP_001010517.1| NAD(P)H-quinone oxidoreductase subunit H [Prochlorococcus marinus
str. MIT 9515]
gi|229891152|sp|A2BUE9|NDHH_PROM5 RecName: Full=NAD(P)H-quinone oxidoreductase subunit H; AltName:
Full=NAD(P)H dehydrogenase subunit H; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H;
AltName: Full=NDH-1 subunit H; Short=NDH-H
gi|123199802|gb|ABM71410.1| putative NADH dehydrogenase subunit [Prochlorococcus marinus str.
MIT 9515]
Length = 395
Score = 374 bits (961), Expect = e-101, Method: Composition-based stats.
Identities = 161/395 (40%), Positives = 226/395 (57%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +NFGP HP+ HGVLRL++ LDGE V +P IG LHRG EK+ E +T + V
Sbjct: 5 ETRTEPMVVNFGPHHPSMHGVLRLVVTLDGENVIDCEPVIGYLHRGMEKIAENRTNVMYV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R+DY A M E A E+L I +P R IRVL E+ RI +HLL + D
Sbjct: 65 PYVSRMDYAAGMFYEAIVVNAPERLANISVPKRASYIRVLMLELNRIANHLLWLGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSR-MHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E A+G R ++ +FR GGV D+P +E +CD F
Sbjct: 125 VGAQTPFFYIFREREMIYDLWEAATGQRLINNNFFRIGGVACDLPYGWLEKCIDFCDWFA 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IFK+R +GT++ + A W SG M+R SG +WDLRK YECY
Sbjct: 185 PKIDEYEKLITNNPIFKKRIEGLGTIERDQAINWSLSGPMLRASGVSWDLRKVDNYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+ I K GDCY RY VR+ EMR+S+KIIRQ + G GP + K +
Sbjct: 245 DFDWKIASEKEGDCYARYRVRVEEMRQSLKIIRQACEMIPG----GPTENLEAKRMATDD 300
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ K + +P GE+Y +E+ KGE GV++ + P+R KIRA
Sbjct: 301 KKSDIFGIDYQYVAKKVAPTFKIPNGELYTRLESGKGEIGVFIQGNNEVTPWRFKIRAAD 360
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + + KG ++AD+ AILGS+D++ G VDR
Sbjct: 361 LNNLQILPHILKGAKIADIMAILGSIDVIMGSVDR 395
>gi|237809382|ref|YP_002893822.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Tolumonas
auensis DSM 9187]
gi|237501643|gb|ACQ94236.1| NADH dehydrogenase I, D subunit [Tolumonas auensis DSM 9187]
Length = 603
Score = 374 bits (961), Expect = e-101, Method: Composition-based stats.
Identities = 152/395 (38%), Positives = 226/395 (57%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+N GP HP+AHG RL+L+LDGE + P IG HRG EK+ E +++ +
Sbjct: 213 TSSEDYMFLNLGPNHPSAHGAFRLVLQLDGEEILDCVPDIGYHHRGAEKMGERQSWHSYI 272
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ + Y L+VEKL GI++P R + IR++ SE+ RI SHLL + T D
Sbjct: 273 PYTDRVEYLGGVMNNLPYVLSVEKLAGIDVPERVKYIRIMMSELFRINSHLLFLGTYIQD 332
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCW-CDSFP 181
VGA+TP + F +R+K+ E +G+RMH ++FR GGV D+P I D P
Sbjct: 333 VGAMTPVFYAFTDRQKIYNIIEAVTGARMHPSWFRIGGVAHDLPQGWQRLIKDNLLDWLP 392
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+ LN+ N + R V + + A WG +G +R +G +DLRK +PY Y
Sbjct: 393 NRLNEYVKAALQNSVLMGRTVGVAAYNTQQALSWGVTGAGLRATGLNFDLRKWRPYSGYE 452
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DFD+P+G++GD YDR +VR+ E+R+S++II QC++ + GP A P PP +
Sbjct: 453 LFDFDVPVGQNGDAYDRAMVRVEEIRQSMRIIEQCMHNM----PEGPFKADHPLTTPPPK 508
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI+HF + G +P E + +EA KG YL SDG YR +IR P
Sbjct: 509 ERTLQDIETLINHFLQVSWGPIMPAQESFQMIEATKGANSYYLTSDGSTMSYRTRIRTPS 568
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ HLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 569 FPHLQQIPSVIRGQLVSDLIVYLGSIDFVMSDVDR 603
>gi|262366273|gb|ACY62830.1| NADH dehydrogenase I chain C/D [Yersinia pestis D182038]
Length = 527
Score = 374 bits (961), Expect = e-101, Method: Composition-based stats.
Identities = 151/394 (38%), Positives = 225/394 (57%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP++HG R++L+LDGE + P +G HRG EK+ E +++ +
Sbjct: 138 TENEDFMFLNLGPNHPSSHGAFRIVLQLDGEEIIDCVPDVGYHHRGAEKMGERQSWHSYI 197
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R IRV+ SE+ RI SHLL ++T D
Sbjct: 198 PYTDRIEYLGGCVNEMPYVLAVEKLAGIVVPDRVNTIRVMLSELFRINSHLLYISTFIQD 257
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 258 VGAMTPVFFAFTDRQKVYDVIEAITGFRMHPAWFRIGGVAHDLPRGWERLLRDFLDWMPK 317
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R+V + ++A WG +G +R +G +D+RK +PY Y
Sbjct: 318 RLDSYVKAALQNSILKGRSVGVAAYNAKEALEWGVTGAGLRATGVEFDVRKWRPYSGYEN 377
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF++P+G +GDCYDR ++++ E+R+S++I+ QC + GP A P PP +
Sbjct: 378 FDFEVPVGNNGDCYDRVMLKVEELRQSLRILEQCYKNM----PEGPFKADHPLTTPPPKE 433
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ +E+LI HF + G +P E + +EA KG YL SDG YR +IR P Y
Sbjct: 434 RTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSY 493
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 494 AHLQQIPSVIRGSLVSDLIVYLGSIDFVMSDVDR 527
>gi|207091612|ref|ZP_03239399.1| NADH dehydrogenase subunit D [Helicobacter pylori HPKX_438_AG0C1]
Length = 409
Score = 374 bits (960), Expect = e-101, Method: Composition-based stats.
Identities = 168/394 (42%), Positives = 243/394 (61%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +NFGPQHP++HG LRLILEL+GE + + P IG LHRG EKL E T+ + +
Sbjct: 18 EHDDNQMILNFGPQHPSSHGQLRLILELEGEKIIKATPEIGYLHRGCEKLGENMTYNEYM 77
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DRLDY + + +AYA AVE LL +EIP R Q+IR + E+ R++SH+ ++ A+D
Sbjct: 78 PTTDRLDYTSSTSNNYAYAYAVETLLNLEIPRRAQVIRTILLELNRMISHIFFISVHALD 137
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA++ L+ F+ RE + E G+R+ R GGV D+PP +E + +
Sbjct: 138 VGAMSVFLYAFKTREYGLDLMEDYCGARLTHNAIRIGGVPLDLPPNWLEGLKKFLGEMRE 197
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
I LL NRI++ R N+G V + A WG SG+M+RG+G A+D+RK +PYE Y E
Sbjct: 198 CKKLIQGLLDKNRIWRMRLENVGVVTPKMAQSWGMSGIMLRGTGIAYDIRKEEPYELYKE 257
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LDFD+P+G +GD YDRY + M+E+ ES++II+Q + + P+ A +P + +
Sbjct: 258 LDFDVPVGNYGDSYDRYCLYMLEIDESIRIIKQLIPMYAKTD--TPIMAQNPHYISAPKE 315
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
D+ +L+ HF L +G PVGEVYA E+PKGE G ++ S+G P+R KIRAP +
Sbjct: 316 DIMTQNYALMQHFVLVAQGMRPPVGEVYAPTESPKGELGFFIHSEGEPYPHRLKIRAPSF 375
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H+ A+ + G LAD ++GS + VFGEVDR
Sbjct: 376 YHIGALSDILVGQYLADAVTVIGSTNAVFGEVDR 409
>gi|159901494|ref|YP_001547741.1| NADH dehydrogenase (quinone) [Herpetosiphon aurantiacus ATCC 23779]
gi|218534366|sp|A9B480|NUOD2_HERA2 RecName: Full=NADH-quinone oxidoreductase subunit D 2; AltName:
Full=NADH dehydrogenase I subunit D 2; AltName:
Full=NDH-1 subunit D 2
gi|159894533|gb|ABX07613.1| NADH dehydrogenase (quinone) [Herpetosiphon aurantiacus ATCC 23779]
Length = 370
Score = 374 bits (960), Expect = e-101, Method: Composition-based stats.
Identities = 163/393 (41%), Positives = 222/393 (56%), Gaps = 26/393 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K+ IN GPQHP+ HGV R+++ +DGE + + P G LHR E+L E T+LQ +P+
Sbjct: 3 KTEELQINIGPQHPSTHGVFRMLVTVDGETLVDLKPVFGYLHRNHEQLGEVNTYLQNMPF 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDY M HAYA AVE L G+E+P R Q IRV+ E+ RIL+H + D+G
Sbjct: 63 TDRLDYFNSMVNNHAYARAVETLAGVEVPERAQYIRVIMDELSRILNHATAMGFMLGDMG 122
Query: 125 AL-TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
A T LWG EREK++ +E SG+RM Y R GGV +DI + ++ P
Sbjct: 123 AWQTALLWGMREREKILDMFEYVSGARMMCNYCRFGGVVRDIDDWFITELKKLMQGLPHY 182
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+D LL + I R NIG + E A + +G ++RGSG A+D+RK++PY Y
Sbjct: 183 FDDFEGLLLNSEILLARARNIGVLPKELALAYSVTGPVLRGSGVAYDIRKAEPYAVYDRF 242
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
F +P+G GD YDR+LVR+ EMRES KI+ Q + +L
Sbjct: 243 KFKVPVGTVGDVYDRFLVRIAEMRESYKILEQAIEQLPDATGGF---------------- 286
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ K+ + P GE YA VE+PKGE G YL+SDG YR K+RAP +
Sbjct: 287 ---------INPKVKQQSLKAPAGEAYARVESPKGELGFYLVSDGSGSAYRYKVRAPSFI 337
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L ++ +CKG+ +ADV ILGS+DIV GEVDR
Sbjct: 338 NLSSLADMCKGYSIADVVVILGSIDIVMGEVDR 370
>gi|145298721|ref|YP_001141562.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Aeromonas
salmonicida subsp. salmonicida A449]
gi|218528033|sp|A4SLP2|NUOCD_AERS4 RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|142851493|gb|ABO89814.1| NADH dehydrogenase I, C/D subunits [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 601
Score = 374 bits (960), Expect = e-101, Method: Composition-based stats.
Identities = 153/394 (38%), Positives = 222/394 (56%), Gaps = 5/394 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+AHG RL+L+LDGE + P IG HRG EK+ E +++ +P
Sbjct: 212 ENEDYMFLNLGPNHPSAHGAFRLVLQLDGEEIRNCVPDIGYHHRGAEKMGERQSWHSYIP 271
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR++Y+ + Y LAVEKL GI++P R +IRV+ +E+ RI SHLL + T DV
Sbjct: 272 YTDRVEYLGGVMNNLPYVLAVEKLAGIKVPNRVDVIRVMMAELFRIQSHLLFLGTYIQDV 331
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCW-CDSFPS 182
GA+TP + F +R+K+ E +G+RMH A+FR GGV D+P + P
Sbjct: 332 GAMTPVFFTFTDRQKIYTIIEAITGARMHPAWFRIGGVAHDLPKGWQRLVQDNLLSWLPK 391
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L D N I + R + + E A WG +G +R +G +D+RK +PY Y +
Sbjct: 392 RLMDYEKAAMRNSILRGRTIGVSAYTTEQALAWGTTGAGLRATGLNFDVRKWRPYSGYDQ 451
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF++P+G +GD YDR VR+ E+R+S+ II QC+ + GP A P PP +
Sbjct: 452 FDFEVPVGSNGDAYDRATVRIEEIRQSLSIIEQCMKNM----PEGPFKADHPLTTPPPKD 507
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ +E+LI HF + G +P E + +EA KG YL SDG YR +IR P +
Sbjct: 508 RTLQDIETLITHFLQVSWGPVMPAAESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSF 567
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ + + KG ++D+ LGS+D V +VDR
Sbjct: 568 AHLQQIPSVIKGSMVSDLIVYLGSIDFVMSDVDR 601
>gi|311278757|ref|YP_003940988.1| NADH dehydrogenase I, D subunit [Enterobacter cloacae SCF1]
gi|308747952|gb|ADO47704.1| NADH dehydrogenase I, D subunit [Enterobacter cloacae SCF1]
Length = 602
Score = 374 bits (960), Expect = e-101, Method: Composition-based stats.
Identities = 153/395 (38%), Positives = 224/395 (56%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +
Sbjct: 212 TENEDFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 271
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 272 PYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQD 331
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + + P
Sbjct: 332 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLEWMPK 391
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R+V + ++A WG +G +R +G +D+RK +PY Y
Sbjct: 392 RLDSYEKAALRNTILKGRSVGVAAYTAKEALEWGTTGAGLRATGIGFDVRKWRPYSGYEN 451
Query: 243 LDFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF+IP G DCY R ++++ E+R+S++I++QC++ + GP A P PP +
Sbjct: 452 FDFEIPTGGGVSDCYTRVMLKVEELRQSLRILQQCLDNM----PEGPFKADHPLTTPPPK 507
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + VEA KG YL SDG YR +IR P
Sbjct: 508 ERTLQHIETLITHFLQVSWGPVMPANESFQMVEATKGINSYYLTSDGSTMSYRTRIRTPS 567
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YAHLQ + +G ++D+ LGS+D V +VDR
Sbjct: 568 YAHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR 602
>gi|332296569|ref|YP_004438492.1| NAD(P)H-quinone oxidoreductase subunit H [Thermodesulfobium
narugense DSM 14796]
gi|332179672|gb|AEE15361.1| NAD(P)H-quinone oxidoreductase subunit H [Thermodesulfobium
narugense DSM 14796]
Length = 419
Score = 374 bits (960), Expect = e-101, Method: Composition-based stats.
Identities = 164/376 (43%), Positives = 235/376 (62%), Gaps = 2/376 (0%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ ++ +N GPQHPA HGVLRL+L LDGE + ++PHIG LHRG EKL+E+KT+ QA
Sbjct: 27 ENLDTKEMILNMGPQHPATHGVLRLVLRLDGEEIVGMEPHIGYLHRGIEKLMESKTYAQA 86
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+P DRLDY++ AYA+A+EKL GIE PIR + IR ++ E+ RI SHLL + T A+
Sbjct: 87 LPLTDRLDYISSPANNTAYAIAIEKLFGIEAPIRAKFIRTIFCEMSRICSHLLWLATHAL 146
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D+GA+T + F ERE L+ +E G+R+ + R GGV DI PE V+ + + FP
Sbjct: 147 DIGAMTIFTYCFREREWLLDLFEMTVGARLLTNFARIGGVRCDISPEFVQSLREFTKVFP 206
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
S + + LLT N I+ +R + I + EDA WG +G +RGSG +DLR+ QPY+ Y
Sbjct: 207 SKVQEYETLLTKNPIWMERTIGIAQISAEDALNWGLTGPCLRGSGVDYDLRRDQPYDAYP 266
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ F +P GK+GD YDRYL RM E+R+S +II+Q +++L V + PP++
Sbjct: 267 YVKFYVPTGKNGDVYDRYLCRMEELRQSNEIIKQLLDQLPDGETVSDDTPDLVIPTPPRQ 326
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ S+ S E + G++Y+AVE PKGE G+Y++SDG KPYR ++R P
Sbjct: 327 VEAAGSVASAFITLSK--ERKMINTGDLYSAVEVPKGELGIYVVSDGSGKPYRLRLRTPS 384
Query: 362 YAHLQAMEFLCKGHQL 377
+ H+ AM L GH +
Sbjct: 385 FVHISAMPVLSIGHMV 400
>gi|15612249|ref|NP_223902.1| NADH dehydrogenase subunit D [Helicobacter pylori J99]
gi|210135422|ref|YP_002301861.1| NADH dehydrogenase subunit D [Helicobacter pylori P12]
gi|81625871|sp|Q9ZJW4|NUOD_HELPJ RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|229891396|sp|B6JNA3|NUOD_HELP2 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|4155794|gb|AAD06770.1| NADH oxidoreductase I [Helicobacter pylori J99]
gi|210133390|gb|ACJ08381.1| NADH-ubiquinone oxidoreductase chain D [Helicobacter pylori P12]
gi|317014655|gb|ADU82091.1| NADH dehydrogenase subunit D [Helicobacter pylori Gambia94/24]
Length = 409
Score = 374 bits (960), Expect = e-101, Method: Composition-based stats.
Identities = 168/394 (42%), Positives = 242/394 (61%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +NFGPQHP++HG LRLILEL+GE + + P IG LHRG EKL E T+ + +
Sbjct: 18 EHDDNQMILNFGPQHPSSHGQLRLILELEGEKIIKATPEIGYLHRGCEKLGENMTYNEYM 77
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DRLDY + + +AYA AVE LL +EIP R Q+IR + E+ R++SH+ ++ A+D
Sbjct: 78 PTTDRLDYTSSTSNNYAYAYAVETLLNLEIPRRAQVIRTILLELNRMISHIFFISVHALD 137
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA++ L+ F+ RE + E G+R+ R GGV D+PP +E + +
Sbjct: 138 VGAMSVFLYAFKTREYGLDLMEDYCGARLTHNAIRIGGVPLDLPPNWLEGLKKFLGEMRE 197
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
I LL NRI++ R N+G V + A WG SG+M+RG+G A+D+RK +PYE Y E
Sbjct: 198 CKKLIQGLLDKNRIWRMRLENVGVVTPKMAQSWGMSGIMLRGTGIAYDIRKEEPYELYKE 257
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LDFD+P+G +GD YDRY + M+E+ ES++II Q + + P+ A +P + +
Sbjct: 258 LDFDVPVGNYGDSYDRYCLYMLEIDESIRIIEQLIPMYAKTD--TPIMAQNPHYISAPKE 315
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
D+ +L+ HF L +G PVGEVYA E+PKGE G ++ S+G P+R KIRAP +
Sbjct: 316 DIMTQNYALMQHFVLVAQGMRPPVGEVYAPTESPKGELGFFIHSEGEPYPHRLKIRAPSF 375
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H+ A+ + G LAD ++GS + VFGEVDR
Sbjct: 376 YHIGALSDILVGQYLADAVTVIGSTNAVFGEVDR 409
>gi|309792514|ref|ZP_07686978.1| NADH dehydrogenase I, D subunit [Oscillochloris trichoides DG6]
gi|308225502|gb|EFO79266.1| NADH dehydrogenase I, D subunit [Oscillochloris trichoides DG6]
Length = 369
Score = 374 bits (960), Expect = e-101, Method: Composition-based stats.
Identities = 169/393 (43%), Positives = 233/393 (59%), Gaps = 27/393 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K+ IN GPQHP+ HGV R+I+ +DGE + + P G LHR E++ E T+LQ +PY
Sbjct: 3 KTEELQINIGPQHPSTHGVFRMIVTVDGETITDLKPVFGYLHRNHEQIAEVNTYLQNMPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDY M HAYALAVEKL+GIE+P R + +RVL E+ RIL+H + D+G
Sbjct: 63 TDRLDYFNSMANNHAYALAVEKLVGIEVPERAEYLRVLMVELTRILNHAGALGFLINDMG 122
Query: 125 AL-TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
A T +G EREK++ +E ASG+R+ YFR GGV +D+PP+ + + + P+
Sbjct: 123 AWQTQLAFGMREREKILDLFESASGARLMCNYFRFGGVARDLPPDFMPRLKDLLIAMPAF 182
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
++++ LL N I QR+ NIG + E A + +G M+R SG +D+RK++PY Y
Sbjct: 183 VDEMERLLRENEILLQRSENIGILPKEVAISYSVTGPMLRASGVPYDIRKAEPYSIYDRF 242
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DFD+PIG GD YDR LVR+ EMR+S +II Q + +L
Sbjct: 243 DFDVPIGAVGDVYDRILVRIEEMRQSKRIIEQIIQQLPDAQGG----------------- 285
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
H + P G+VYA VE PKGE G YL+SDG KPYR K+RAP +
Sbjct: 286 ---------HINPKARQNVRPPAGDVYARVETPKGELGFYLVSDGSLKPYRYKVRAPSFI 336
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L + +C+G+++ADV ILGS+DIV GEVDR
Sbjct: 337 NLTPLGDMCRGYKVADVVVILGSIDIVMGEVDR 369
>gi|254779806|ref|YP_003057912.1| NADH dehydrogenase subunit D [Helicobacter pylori B38]
gi|254001718|emb|CAX29949.1| NADH-ubiquinone oxidoreductase, NQO4 subunit [Helicobacter pylori
B38]
Length = 409
Score = 374 bits (960), Expect = e-101, Method: Composition-based stats.
Identities = 167/394 (42%), Positives = 241/394 (61%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +NFGPQHP++HG LRLILEL+GE + + P IG LHRG EKL E T+ + +
Sbjct: 18 EHDDNQMILNFGPQHPSSHGQLRLILELEGEKIIKATPEIGYLHRGCEKLGENMTYNEYM 77
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DRLDY + + +AYA AVE LL +EIP R Q+IR + E+ R++SH+ ++ A+D
Sbjct: 78 PTTDRLDYTSSTSNNYAYAYAVETLLNLEIPRRAQVIRTILLELNRMISHIFFISVHALD 137
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA++ L+ F+ RE + E G+R+ R GGV D+PP +E + +
Sbjct: 138 VGAMSVFLYAFKTREYGLDLMEDYCGARLTHNAIRIGGVPLDLPPNWLEGLKKFLGEMRE 197
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
I LL NRI++ R N+G V + WG SG+M+RG+G A+D+RK +PYE Y E
Sbjct: 198 CKKLIQGLLDKNRIWRMRLENVGVVTPKMVQSWGMSGIMLRGTGIAYDIRKEEPYELYKE 257
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LDFD+P+G +GD YDRY + M+E+ ES++II Q + + P+ A +P + +
Sbjct: 258 LDFDVPVGNYGDSYDRYCLYMLEIDESIRIIEQLIPMYAKTD--TPIMAQNPHYISAPKE 315
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
D+ +L+ HF L +G PVGEVYA E+PKGE G ++ S+G P+R KIRAP +
Sbjct: 316 DIMTQNYALMQHFVLVAQGMRPPVGEVYAPTESPKGELGFFIHSEGEPYPHRLKIRAPSF 375
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H+ A+ + G LAD ++GS + VFGEVDR
Sbjct: 376 YHIGALSDILVGQYLADAVTVIGSTNAVFGEVDR 409
>gi|325996538|gb|ADZ51943.1| NADH-ubiquinone oxidoreductase chain D [Helicobacter pylori 2018]
gi|325998127|gb|ADZ50335.1| NADH-ubiquinone oxidoreductase chain D [Helicobacter pylori 2017]
Length = 409
Score = 374 bits (960), Expect = e-101, Method: Composition-based stats.
Identities = 167/394 (42%), Positives = 242/394 (61%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +NFGPQHP++HG LRLILEL+GE + + P IG LHRG EKL E T+ + +
Sbjct: 18 EHDDNQMILNFGPQHPSSHGQLRLILELEGEKIIKATPEIGYLHRGCEKLGENMTYNEYM 77
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DRLDY + + +AYA AVE LL +EIP R Q+IR + E+ R++SH+ ++ A+D
Sbjct: 78 PTTDRLDYTSSTSNNYAYAYAVETLLNLEIPRRAQVIRTILLELNRMISHIFFISVHALD 137
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA++ L+ F+ RE + E G+R+ R GGV D+PP +E + +
Sbjct: 138 VGAMSVFLYAFKTREYGLDLMEDYCGTRLTHNAIRIGGVPLDLPPNWLEGLKKFLGEMRE 197
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
I LL NRI++ R N+G V + A WG SG+M+RG+G A+D+RK +PYE Y E
Sbjct: 198 CKKLIQGLLDKNRIWRMRLENVGVVTPKMAQSWGMSGIMLRGTGIAYDIRKEEPYELYKE 257
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LDFD+P+G +GD YDRY + M+E+ ES++I+ Q + + P+ A +P + +
Sbjct: 258 LDFDVPVGNYGDSYDRYCLYMLEIDESIRIVEQLIPMYAKTD--TPIMAQNPHYISAPKE 315
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
D+ +L+ HF L +G PVGEVYA E+PKGE G ++ S+G P+R KIRAP +
Sbjct: 316 DIMTQNYALMQHFVLVAQGMRPPVGEVYAPTESPKGELGFFIHSEGEPYPHRLKIRAPSF 375
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H+ A+ + G LAD ++GS + VFGEVDR
Sbjct: 376 YHIGALSDILVGQYLADAVTVIGSTNAVFGEVDR 409
>gi|111074961|gb|ABH04823.1| NAD(P)H-quinone oxidoreductase subunit 7 [Heliobacillus mobilis]
Length = 364
Score = 374 bits (960), Expect = e-101, Method: Composition-based stats.
Identities = 154/391 (39%), Positives = 233/391 (59%), Gaps = 29/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+++ + +N GPQHP+ HGVLR++LELDGEIV + P IG LHRG EK+ E KT++Q +P+
Sbjct: 2 QTQKYELNMGPQHPSTHGVLRILLELDGEIVVKATPIIGYLHRGIEKICENKTYVQTIPF 61
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY+A M + A+EKL+G+ +P R + IRV+ +E+ RI SH++ + + MD+G
Sbjct: 62 TDRMDYLAAMGNNLGISQAIEKLMGVTVPERAEYIRVIMAELSRIASHMICIGSLVMDIG 121
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
+T + +RE+++ + RA G+RM Y R GGV QD+P V+ + ++F +
Sbjct: 122 GVTGFTFCIRDREEILELFNRACGARMTFNYIRVGGVSQDLPEGWVDACWKFVNNFDKVM 181
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
++L+ GN I + R +I + E A +G ++R SG +D+RK+ PY Y D
Sbjct: 182 ETYNNLIVGNEIVQLRLKDIAILSAERAIAMSATGAVLRASGVDYDVRKADPYGIYDRFD 241
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FD+P+G+ GD +DR+++R EM +SV+II+Q + ++ GPV A K++
Sbjct: 242 FDVPLGQKGDNWDRFMLRFYEMEQSVRIIKQALEQM----PEGPVMARSRKVI------- 290
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GEVY VE KGE G Y++SDG KPYR R +
Sbjct: 291 ------------------KPPAGEVYHRVENAKGEIGFYVVSDGTTKPYRWHARRAAMVN 332
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ ++ LC G++L DV AILG+LD V GEVD
Sbjct: 333 LQLLDELCHGNKLGDVVAILGTLDPVLGEVD 363
>gi|27904648|ref|NP_777774.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Buchnera
aphidicola str. Bp (Baizongia pistaciae)]
gi|38372477|sp|Q89AU4|NUOCD_BUCBP RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|27904045|gb|AAO26879.1| NADH dehydrogenase I chain C/D [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
Length = 597
Score = 374 bits (960), Expect = e-101, Method: Composition-based stats.
Identities = 150/394 (38%), Positives = 224/394 (56%), Gaps = 5/394 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K+S+ +N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +T+ +P
Sbjct: 208 KQSKYMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQTWHNYIP 267
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR++Y+ E Y LAVE+L GIE+ R ++IR++ SE+ RI SHLL ++T DV
Sbjct: 268 YTDRVEYLGGCINEMPYVLAVERLAGIEVSQRIEVIRIMLSELFRINSHLLFISTFIQDV 327
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+TP F +R+K+ E +GSRMH A+FR GG+ D+P + + P
Sbjct: 328 GAMTPVFLAFTDRQKIYDLIELITGSRMHPAWFRIGGLAHDLPKGWNALLKEFLLWMPKR 387
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L ++ N I R+ I DA WG +G +R +G +D+RK +PY Y
Sbjct: 388 LLKYINVALKNSILISRSKGIAEYNKHDALLWGVTGAGLRATGINFDVRKKRPYSGYQNF 447
Query: 244 DFDIPIGK-HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF++PIG DCY R ++++ E+ +S+ I++QC+ + GP P PP +
Sbjct: 448 DFEVPIGAGISDCYSRVMLKLEEIWQSLAILKQCLENM----PEGPFKMDHPNTTPPHKV 503
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ +E++I HF + G + E + VEA KG YLISDG YR +IR P +
Sbjct: 504 RTLQHIETMISHFLKVSWGPVLSSNESFKMVEATKGINSYYLISDGNTMSYRTRIRTPSF 563
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ + + +G+ ++D+ A LGS+D V +VDR
Sbjct: 564 PHLQQIPSVIRGNLISDLIAYLGSIDFVMSDVDR 597
>gi|70731258|ref|YP_260999.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas fluorescens Pf-5]
gi|123654429|sp|Q4K9T4|NUOCD_PSEF5 RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|68345557|gb|AAY93163.1| NADH-quinone oxidoreductase, C/D subunit [Pseudomonas fluorescens
Pf-5]
Length = 593
Score = 374 bits (960), Expect = e-101, Method: Composition-based stats.
Identities = 150/390 (38%), Positives = 227/390 (58%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +PY D
Sbjct: 208 DYMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMAERQSWHSFIPYTD 267
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+DY+ + Y L+VEKL GI++P + +IR++ +E RI SHLL + T DVGA+
Sbjct: 268 RIDYLGGVMNNLPYVLSVEKLAGIKVPEKVDVIRIMMAEFFRITSHLLFLGTYIQDVGAM 327
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP + F +R++ E +G R+H A++R GGV D+P + + + + P L++
Sbjct: 328 TPVFFTFTDRQRAYTVIEAITGFRLHPAWYRIGGVAHDLPRGWEKLVKDFVEWLPKRLDE 387
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ N I K R + + ++A WG +G +R +G +DLRK++PY Y +F+
Sbjct: 388 YTKAALQNSILKGRTIGVAAYNTKEALEWGVTGAGLRSTGCDFDLRKARPYSGYENFEFE 447
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+P+ +GD YDR +VR+ EMR+S+KII QC+ + GP A P PP + +
Sbjct: 448 VPLAANGDAYDRCMVRVEEMRQSIKIIDQCLRNM----PEGPYKADHPLTTPPPKERTLQ 503
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+E+LI HF + G +P E + +EA KG YL SDGG YR +IR P +AHLQ
Sbjct: 504 HIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGGTMSYRTRIRTPSFAHLQ 563
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + +G +AD+ A LGS+D V +VDR
Sbjct: 564 QIPSVIRGSMVADLIAYLGSIDFVMADVDR 593
>gi|117619929|ref|YP_856316.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
gi|218528032|sp|A0KJ65|NUOCD_AERHH RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|117561336|gb|ABK38284.1| NADH-quinone oxidoreductase chain c/d [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 601
Score = 374 bits (960), Expect = e-101, Method: Composition-based stats.
Identities = 151/394 (38%), Positives = 224/394 (56%), Gaps = 5/394 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+AHG RL+L+LDGE + P IG HRG EK+ E +++ +P
Sbjct: 212 ENEDYMFLNLGPNHPSAHGAFRLVLQLDGEEIRDCVPDIGYHHRGAEKMGERQSWHSYIP 271
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR++Y+ + Y LAVEKL GI++P R +IRV+ +E+ RI SHLL + T DV
Sbjct: 272 YTDRVEYLGGVMNNLPYVLAVEKLAGIKVPQRVDMIRVMLAELFRIQSHLLFIGTYIQDV 331
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCW-CDSFPS 182
GA+TP + F +R+++ E +G+RMH A+FR GGV D+P + P
Sbjct: 332 GAMTPVFFTFTDRQRIYTIIEAITGARMHPAWFRIGGVAHDLPVGWQRLVQDNLLSWLPK 391
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L D N I + R + + E A WG +G +R +G +D+RK +PY Y +
Sbjct: 392 RLMDYEKAAMRNSILRGRTIGVAAYNTEQALAWGTTGGGLRATGLNFDVRKWRPYSGYDQ 451
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+F++P+G +GD YDR LVR+ E+R+S++II QC+ + GP A P PP +
Sbjct: 452 FEFEVPVGANGDAYDRALVRIEEVRQSMRIIEQCMKNM----PEGPFKADHPLTTPPPKE 507
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ +E+LI HF + G +P E + +EA KG YL SDG YR +IR P +
Sbjct: 508 RTLQDIETLITHFLQVSWGPVMPAAESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSF 567
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 568 AHLQQIPSVIRGQMVSDLIVYLGSIDFVMSDVDR 601
>gi|172072942|ref|YP_001806703.1| NADH dehydrogenase subunit 7 [Cryptomeria japonica]
gi|218527768|sp|B1VKJ0|NDHH_CRYJA RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|171854961|dbj|BAG16701.1| NADH-plastoquinone oxidoreductase subunit 7 [Cryptomeria japonica]
gi|239794329|dbj|BAH73326.1| NADH-plastoquinone oxidoreductase subunit 7 [Cryptomeria japonica]
gi|239794412|dbj|BAH73408.1| NADH-plastoquinone oxidoreductase subunit 7 [Cryptomeria japonica]
Length = 393
Score = 374 bits (960), Expect = e-101, Method: Composition-based stats.
Identities = 164/396 (41%), Positives = 223/396 (56%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M ++ ++ GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 MVAREKDLMMVSMGPHHPSMHGVLRLIVTLDGEDVIDCEPVLGYLHRGMEKIAENRTIVQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E A EKL I+IP R IR++ E+ RI SHLL +
Sbjct: 63 YLPYVTRWDYLATMFTEAITVNAPEKLENIQIPKRASYIRMIMLELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + ERE + +E A+G RM YFR GGV D+P ++ +C F
Sbjct: 123 ADIGAQTPFFYILREREMIYDLFEAATGMRMMHNYFRIGGVAVDLPYGWIDKCLDFCYYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ + L+T N IF +R +G + E+A W SG M+R SG WDLRK YECY
Sbjct: 183 FPKVTEYERLITRNPIFLKRVEGVGIISREEAIDWSLSGPMLRASGIQWDLRKVDHYECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
ELD++I K GD RYL+R+ EM+ES+KIIRQ + + G GP + + +
Sbjct: 243 DELDWEIQWQKEGDSLARYLLRIGEMKESIKIIRQALEVIPG----GPYENLEVRRLNKG 298
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ ES K + + + E Y VEAPKGE G++ I D P+R KIR P
Sbjct: 299 KDSQWNDFES-RFISKKPSPTFELSKQEHYVRVEAPKGELGIFFIGDDNIFPWRWKIRPP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 358 GFINLQIPPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|317178443|dbj|BAJ56231.1| NADH dehydrogenase subunit D [Helicobacter pylori F30]
Length = 409
Score = 374 bits (960), Expect = e-101, Method: Composition-based stats.
Identities = 167/394 (42%), Positives = 242/394 (61%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +NFGPQHP++HG LRLILEL+GE + + P IG LHRG EKL E T+ + +
Sbjct: 18 EHDDNQMILNFGPQHPSSHGQLRLILELEGEKIIKATPEIGYLHRGCEKLGENMTYNEYM 77
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DRLDY + + +AYA AVE LL +EIP R Q+IR + E+ R++SH+ ++ A+D
Sbjct: 78 PTTDRLDYTSSTSNNYAYAHAVETLLNLEIPRRAQVIRTILLELNRMISHIFFISVHALD 137
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA++ L+ F+ RE + E G+R+ R GGV D+PP +E + +
Sbjct: 138 VGAMSVFLYAFKTREYGLDLMEDYCGARLTHNAIRIGGVPLDLPPNWLEGLKKFLGEMRE 197
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
I LL NRI++ R ++G V + A WG SG+M+RGSG A+D+RK +PYE Y E
Sbjct: 198 CKKLIQGLLDKNRIWRMRLEDVGVVTPKMAQSWGMSGIMLRGSGIAYDIRKEEPYELYKE 257
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LDFD+P+G +GD YDRY + M+E+ ES++II Q + + P+ A +P + +
Sbjct: 258 LDFDVPVGNYGDSYDRYCLYMLEIDESIRIIEQLIPMYAKTD--TPIMAQNPHYISAPKE 315
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
D+ +L+ HF L +G P+GEVYA E+PKGE G ++ S+G P+R KIRAP +
Sbjct: 316 DIMTQNYALMQHFVLVAQGMRPPIGEVYAPTESPKGELGFFIHSEGEPYPHRLKIRAPSF 375
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H+ A+ + G LAD ++GS + VFGEVDR
Sbjct: 376 YHIGALSDILVGQYLADAVTVIGSTNAVFGEVDR 409
>gi|115523730|ref|YP_780641.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Rhodopseudomonas palustris BisA53]
gi|122296834|sp|Q07QX3|NUOCD_RHOP5 RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|115517677|gb|ABJ05661.1| NADH dehydrogenase I, D subunit [Rhodopseudomonas palustris BisA53]
Length = 581
Score = 374 bits (960), Expect = e-101, Method: Composition-based stats.
Identities = 162/395 (41%), Positives = 231/395 (58%), Gaps = 4/395 (1%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
++ +N+GP A HGV R++L LDGE + P IG HRG EK+ E +++ Q
Sbjct: 191 ERDGVELMILNYGPHSMATHGVFRVVLALDGEEIVAARPDIGFHHRGAEKMGERQSWHQF 250
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+PY DR+DY+ + E Y AVE+L GI +P R + IR++ SEI RI++HLL T A
Sbjct: 251 IPYTDRIDYLGGVISEMPYLQAVERLCGITVPDRAKTIRIMLSEIYRIMNHLLLYGTMAQ 310
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D GA++P + F +RE+ E +G+RMH +FR GGV D+P + + D P
Sbjct: 311 DCGAMSPVFYMFTDRERGYRIIEAITGARMHPGWFRIGGVAADLPEGWDRLVREFLDWMP 370
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
L+D + ++ GN IF+ R V I A WG +G +R +G WDLRK++PY Y
Sbjct: 371 KRLDDYAGMVLGNEIFRGRTVGIAAYDTATALDWGITGPGLRATGCDWDLRKARPYGGYE 430
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+F++P G +GDCYDR LVR+ EMR+S++IIRQC++ + GP+ A P PP R
Sbjct: 431 NFEFEVPTGNNGDCYDRVLVRVEEMRQSLRIIRQCLDHM----PSGPIKADHPLTTPPPR 486
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
M +++LIHHF + G VP GE E +G L+SDG YR +IR P
Sbjct: 487 ERMLHDIDTLIHHFVGVSWGPVVPAGEATGQAETVRGLTQYALVSDGATCSYRTRIRTPS 546
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AHLQA+ + G +AD+ A LGS+D V +VDR
Sbjct: 547 FAHLQAVSAIAPGLTVADLVAYLGSIDYVMSDVDR 581
>gi|304437256|ref|ZP_07397216.1| NADH dehydrogenase (quinone) [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304369748|gb|EFM23413.1| NADH dehydrogenase (quinone) [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 366
Score = 373 bits (959), Expect = e-101, Method: Composition-based stats.
Identities = 155/391 (39%), Positives = 225/391 (57%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ ++T+N GPQHP+ HGVL++ LELDGE + + P +G LHRG EKL+E +T+ Q +PY
Sbjct: 3 RTETYTLNMGPQHPSTHGVLQVQLELDGERIVKATPIMGYLHRGIEKLLEARTYAQGLPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDY++ MN YA AVE+L GIE R + IRV+ +E+ RI SHL+ + T A D+G
Sbjct: 63 TDRLDYISAMNNNFGYARAVEELAGIETTPRAEYIRVIMAELNRINSHLIFIGTLANDLG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A T L+ F +REK++ + G+R Y R GGV +D+ PE E I + DS P L
Sbjct: 123 ASTGMLYCFRDREKILDIFNLVCGARQTFHYIRIGGVKEDLSPEAAEMIRAFVDSVPDFL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ + LLTGN IF +R + E+A +G +R +G A+DLRK Y Y + D
Sbjct: 183 AEYNRLLTGNEIFVRRIRGTSPMTTEEALACSMTGPNLRATGLAFDLRKVDGYSVYDDFD 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F+IP+G+HGD +DRY+V++ E+ ES KI+RQ ++ L
Sbjct: 243 FEIPVGEHGDNWDRYMVKLAEIAESAKIVRQAIDGLPEG--------------------- 281
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K + P GEV++ E +GE G Y++SDG KPYR IR P + +
Sbjct: 282 -------DFMAKKVPKVIKPPKGEVFSRTEGTRGELGFYIVSDGTTKPYRIHIRRPSFVN 334
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+Q + +C+G + D A S+D + GEVD
Sbjct: 335 MQGLNPMCRGMLIGDSVAAYSSIDPIMGEVD 365
>gi|88809877|ref|ZP_01125383.1| NADH dehydrogenase delta subunit [Synechococcus sp. WH 7805]
gi|88786261|gb|EAR17422.1| NADH dehydrogenase delta subunit [Synechococcus sp. WH 7805]
Length = 394
Score = 373 bits (959), Expect = e-101, Method: Composition-based stats.
Identities = 158/395 (40%), Positives = 229/395 (57%), Gaps = 6/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +NFGP HP+ HGVLRL++ LDGE V +P IG LHRG EK+ E +T + V
Sbjct: 5 ETRTEPMVVNFGPHHPSMHGVLRLVVTLDGEDVVDCEPVIGYLHRGMEKIAENRTNVMFV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R+DY A M E A EKL I +P R IRVL E+ RI +HLL + D
Sbjct: 65 PYVSRMDYAAGMFYEAVVVNAPEKLANIPVPKRASYIRVLMLELNRIANHLLWLGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSR-MHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E A+G R ++ YFR GGV D+P +E +CD F
Sbjct: 125 VGAQTPFFYIFREREMIYDLWEAATGQRLINNNYFRIGGVAADLPWGWLEKCRDFCDWFG 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R +G + ++A W SG M+R SG WDLRK YECY
Sbjct: 185 PKIDEYEKLITNNPIFRRRIEGLGVIGKDEAINWSLSGPMLRASGVPWDLRKVDHYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+D+ K GDC+ RY VR+ EMR+S+KI+RQ + + G GP + + + +
Sbjct: 245 DFDWDVAWEKEGDCFARYRVRIEEMRQSLKILRQACDMIPG----GPTENVEARRMAEGK 300
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ + K + +P GE+Y +E+ KGE G+++ + P+R KIRA
Sbjct: 301 DSEFAGFD-YQYVAKKVAPTFKIPNGELYTRLESGKGEIGIFIQGNNDVTPWRFKIRAAD 359
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + + KGH++AD+ AILGS+D++ G VDR
Sbjct: 360 SNNLQILPHILKGHKVADIMAILGSIDVIMGSVDR 394
>gi|308183373|ref|YP_003927500.1| NADH dehydrogenase subunit D [Helicobacter pylori PeCan4]
gi|308064041|gb|ADO05928.1| NADH dehydrogenase subunit D [Helicobacter pylori Sat464]
gi|308065558|gb|ADO07450.1| NADH dehydrogenase subunit D [Helicobacter pylori PeCan4]
Length = 409
Score = 373 bits (959), Expect = e-101, Method: Composition-based stats.
Identities = 168/394 (42%), Positives = 242/394 (61%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +NFGPQHP++HG LRLILEL+GE + + P IG LHRG EKL E T+ + +
Sbjct: 18 EHDDNQMILNFGPQHPSSHGQLRLILELEGEKIIKATPEIGYLHRGCEKLGENMTYNEYM 77
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DRLDY + + +AYA AVE LL +EIP R Q+IR + E+ R++SH+ ++ A+D
Sbjct: 78 PTTDRLDYTSSTSNNYAYAHAVETLLNLEIPRRAQVIRTILLELNRMISHIFFISVHALD 137
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA++ L+ F+ RE + E G+R+ R GGV D+PP +E + +
Sbjct: 138 VGAMSVFLYAFKTREYGLDLMEDYCGARLTHNAIRIGGVPLDLPPNWLEGLKKFLGEMRE 197
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
I LL NRI++ R N+G V + A WG SG+M+RGSG A+D+RK +PYE Y E
Sbjct: 198 CKKLIQGLLDKNRIWRMRLENVGVVTPKMAQSWGMSGIMLRGSGIAYDIRKEEPYELYKE 257
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LDFD+P+G +GD YDRY + M+E+ ES++II Q + + P+ A +P + +
Sbjct: 258 LDFDVPVGNYGDSYDRYCLYMLEIDESIRIIEQLIPMYAKTD--TPIMAQNPHYISAPKE 315
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
D+ +L+ HF L +G P+GEVYA E+PKGE G ++ S+G P+R KIRAP +
Sbjct: 316 DIMTQNYALMQHFVLVAQGMRPPIGEVYAPTESPKGELGFFIHSEGEPYPHRLKIRAPSF 375
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H+ A+ + G LAD ++GS + VFGEVDR
Sbjct: 376 YHIGALSDILVGQYLADAVTVIGSTNAVFGEVDR 409
>gi|297790830|ref|XP_002863300.1| NADH dehydrogenase 49KDa protein [Arabidopsis lyrata subsp. lyrata]
gi|297309134|gb|EFH39559.1| NADH dehydrogenase 49KDa protein [Arabidopsis lyrata subsp. lyrata]
Length = 393
Score = 373 bits (959), Expect = e-101, Method: Composition-based stats.
Identities = 163/390 (41%), Positives = 221/390 (56%), Gaps = 5/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E + +Q +PY
Sbjct: 9 DLMIVNMGPHHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRAIIQYLPYVT 68
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R DY+A M E E+L I++P R IRV+ E+ RI SHLL + D+GA
Sbjct: 69 RWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQ 128
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP + F ERE + +E A+G RM +FR GG+ D+P ++ +CD F + + +
Sbjct: 129 TPFFYIFREREFVYDLFEAATGMRMMHNFFRIGGIAADLPYGWIDKCLDFCDYFLTEVVE 188
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
L+T N IF +R IG + E+A WG SG M+R SG WDLRK YE Y E +++
Sbjct: 189 YQKLITRNPIFLERVEGIGIIGGEEAINWGLSGPMLRASGIPWDLRKVDRYESYDEFEWE 248
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
I K GD RYLVR+ EM ES+KII+Q + L G GP + + KR
Sbjct: 249 IQWQKQGDSLARYLVRLSEMTESIKIIQQALEGLPG----GPYENLESRGFDRKRNPEWN 304
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
E K + + + E+Y VEAPKGE G++LI D P+R KIR PG+ +LQ
Sbjct: 305 DFE-YRFISKKPSPTFELSKQELYVRVEAPKGELGIFLIGDQSGFPWRWKIRPPGFINLQ 363
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 364 ILPELVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|219848532|ref|YP_002462965.1| NADH dehydrogenase I subunit D [Chloroflexus aggregans DSM 9485]
gi|219542791|gb|ACL24529.1| NADH dehydrogenase I, D subunit [Chloroflexus aggregans DSM 9485]
Length = 369
Score = 373 bits (959), Expect = e-101, Method: Composition-based stats.
Identities = 169/393 (43%), Positives = 239/393 (60%), Gaps = 27/393 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+++ +N GPQHP+ HGV R+++ +DGE V + P G LHR E++ E ++LQ +PY
Sbjct: 3 QTQELQVNIGPQHPSTHGVFRMLVTVDGETVVDLKPVFGYLHRNHEQIAEANSYLQNMPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDY M HAYA+AVE+L GIE+P R + IRVL E+ RIL+H V D+G
Sbjct: 63 TDRLDYFNSMANNHAYAMAVERLAGIEVPERAEYIRVLMVELTRILNHASAVGFMINDMG 122
Query: 125 AL-TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
A TP +G EREK++ +E ASG+R+ YFR GGV +D+PPE + ++ + P+
Sbjct: 123 AWQTPLAFGMREREKILDLFEMASGARLMCNYFRFGGVVRDLPPEFIPNLRELLRALPAY 182
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
++++ LL N I QR V IG + E A +G SG ++RGSG +D+RK++PY Y
Sbjct: 183 IDELERLLRDNEILLQRAVGIGILPPEVALSYGVSGPVLRGSGIPYDVRKAEPYSVYDRF 242
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DFDIPIGK GD YDR+LVR+ EMR+S +II Q + +L
Sbjct: 243 DFDIPIGKVGDVYDRFLVRIEEMRQSKRIIEQVLEQLPDAKGG----------------- 285
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
H + PVG+ YA +E+PKGE G YL+SDG +PYR K+RAP +
Sbjct: 286 ---------HINPKARQNVRPPVGDAYARIESPKGELGFYLVSDGSTRPYRYKVRAPSFI 336
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L + +C+G+++AD+ ILGS+DIV GEVDR
Sbjct: 337 NLTPLADMCRGYKVADIVVILGSIDIVMGEVDR 369
>gi|294140413|ref|YP_003556391.1| NADH dehydrogenase I subunits C/D [Shewanella violacea DSS12]
gi|293326882|dbj|BAJ01613.1| NADH dehydrogenase I, C/D subunits [Shewanella violacea DSS12]
Length = 596
Score = 373 bits (959), Expect = e-101, Method: Composition-based stats.
Identities = 167/398 (41%), Positives = 230/398 (57%), Gaps = 6/398 (1%)
Query: 1 MDKKKSRS--FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTF 58
MD+ + +N GP HP+ HGV R+ L+LDGE + P IG HRG EK+ E +T+
Sbjct: 203 MDESSDDNDYLFLNLGPNHPSVHGVFRIALQLDGEQIINSVPDIGYHHRGAEKIAERQTW 262
Query: 59 LQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTT 118
+PY DR+DY+ + Y LA+E+L I++ R + IRV+ +E RILSH+L T
Sbjct: 263 HGFIPYTDRIDYLGGVMNNFPYILAIEQLADIQVSKRVECIRVMLAECFRILSHMLFFGT 322
Query: 119 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
A DVG L+P + F +REKL E +G+RMH ++FR GGV QD+P + + D
Sbjct: 323 FAQDVGQLSPIFYLFIDREKLFSIIEAITGARMHPSWFRIGGVAQDLPQGWHIMMQEFVD 382
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
FP+ L++ ++ N I K R V IG + A W SGV IR +G WDLRKS+PY
Sbjct: 383 YFPAKLDEYEVMVMQNSILKNRAVGIGKYDTQQALEWNISGVGIRATGLEWDLRKSRPYS 442
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
Y FDIP +GD YDR +R+ EMR+S+ II+QC++ + G A P P
Sbjct: 443 GYENYQFDIPTAHNGDAYDRCQLRVDEMRQSINIIQQCIDNM----PQGNYKADHPLTTP 498
Query: 299 PKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
P+ K+ +E+LI HF + G +P GE AVEA KG LISDG + YR +IR
Sbjct: 499 PRSDRSKQDIETLIQHFMNVSWGGVMPKGESSFAVEATKGINAYTLISDGTSSSYRTRIR 558
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
P + HLQ + L KG +AD+ IL S+D V +VDR
Sbjct: 559 TPSFPHLQMIPTLAKGLMVADLIVILASIDFVMADVDR 596
>gi|37521952|ref|NP_925329.1| NAD(P)H-quinone oxidoreductase subunit H [Gloeobacter violaceus PCC
7421]
gi|81709604|sp|Q7NI01|NDHH2_GLOVI RecName: Full=NAD(P)H-quinone oxidoreductase subunit H 2; AltName:
Full=NAD(P)H dehydrogenase subunit H 2; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H 2;
AltName: Full=NDH-1 subunit H 2; Short=NDH-H 2
gi|35212951|dbj|BAC90324.1| NADH dehydrogenase subunit 7 [Gloeobacter violaceus PCC 7421]
Length = 394
Score = 373 bits (959), Expect = e-101, Method: Composition-based stats.
Identities = 162/395 (41%), Positives = 227/395 (57%), Gaps = 6/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +N GP HP+ HGVLRLI+ LDGE V P +G LHRG EK+ E +T +Q +
Sbjct: 5 ETRADQMVLNLGPHHPSTHGVLRLIVTLDGENVVDCRPVLGYLHRGMEKIGENRTIIQYL 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R DY A M E A E + G+++P R IRV+ E+ RI +HLL V +D
Sbjct: 65 PYCSRWDYAAAMMNEAPVVNAPEAMAGVKVPRRASYIRVIMLELSRIANHLLWVGPFLLD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRM-HAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
+GA +P + ERE ++ +E A+G RM YFR GGV D+P V+ CD P
Sbjct: 125 MGAQSPFFYILRERELILDLFEAATGLRMVGNNYFRVGGVTVDLPYGWVDKAHDLCDVIP 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R N+G + EDA WG SG M+R SG WDLRK YE Y
Sbjct: 185 GKIDEYERLITNNPIFRRRIENLGYISREDAINWGLSGPMLRASGVKWDLRKVDHYEIYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
ELD+DI GDC RY+VR+ EMRESVKIIRQ +++L G GP + + +
Sbjct: 245 ELDWDIAWDTGGDCLARYIVRIKEMRESVKIIRQALDQLPG----GPYEQLEARRLAEGP 300
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
S + K + + +P GE YA E KGE G+Y++ P+R KIR P
Sbjct: 301 KSEWNSFD-YQFIGKKSSPTFKIPTGEYYARSEEAKGELGIYVVGRDDTTPWRWKIRTPD 359
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+A+L + + +G ++AD+ +LGS+DI+ G VDR
Sbjct: 360 FANLAILPMILQGTKVADLVVVLGSIDIIMGSVDR 394
>gi|157325579|ref|YP_001468357.1| NADH dehydrogenase subunit 7 [Ipomoea purpurea]
gi|157325589|ref|YP_001468367.1| NADH dehydrogenase subunit 7 [Ipomoea purpurea]
gi|218527776|sp|A7Y3K5|NDHH_IPOPU RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|157056807|gb|ABV02397.1| NADH-plastoquinone oxidoreductase subunit 7 [Ipomoea purpurea]
gi|157056817|gb|ABV02407.1| NADH-plastoquinone oxidoreductase subunit 7 [Ipomoea purpurea]
Length = 393
Score = 373 bits (959), Expect = e-101, Method: Composition-based stats.
Identities = 160/393 (40%), Positives = 224/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLIL LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E E+L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNGPERLSNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM +FR GGV D+P ++ +C+ F +
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNFFRIGGVAADLPHGWIDKCLDFCNYFLTG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R IGT++ E+A WG SG M+R SG WDLRK YECY E
Sbjct: 186 VAEYQKLITQNPIFLERVEGIGTIRAEEALNWGLSGPMLRASGIEWDLRKIDQYECYDEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+++ K GD RYLVR+ EM ES+K+I+Q + + G ++ P+ D
Sbjct: 246 AWEVQWQKEGDSLARYLVRIGEMEESIKMIQQALEGIPGGPYENLEIRRFDRVKHPQWND 305
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ + K + + + E+Y VEAPKGE G++LI D P+R KIR PG
Sbjct: 306 FEYRFIA-----KKTSPIFELSKQELYVRVEAPKGELGIFLIGDQSVFPWRWKIRPPGLI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + + K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQILPQVVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|317968144|ref|ZP_07969534.1| NAD(P)H-quinone oxidoreductase subunit H [Synechococcus sp. CB0205]
Length = 394
Score = 373 bits (958), Expect = e-101, Method: Composition-based stats.
Identities = 158/395 (40%), Positives = 228/395 (57%), Gaps = 6/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +NFGP HP+ HGVLRL++ LDGE V +P IG LHRG EK+ E +T + V
Sbjct: 5 ETRTEPMVVNFGPHHPSMHGVLRLVVTLDGEDVVDCEPVIGYLHRGMEKIAENRTNVMFV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R+DY A M E A E+L + +P R IRVL E+ RI +HLL + D
Sbjct: 65 PYVSRMDYAAGMFYEAIVVNAPERLADVPVPKRASYIRVLMLELNRIANHLLWLGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSR-MHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E A+G R ++ YFR GGV D+P ++ +CD F
Sbjct: 125 VGAQTPFFYIFREREMIYDLWEAATGQRLINNNYFRIGGVAADLPYGWLDKCLDFCDWFG 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R +GT+ E A W SG M+R SG WDLRK YECY
Sbjct: 185 PKIDEYEKLITNNPIFRKRIEGLGTITREQAINWSLSGPMLRASGVPWDLRKVDHYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+++ K GDC+ RY VR+ EMR+S+KI+RQ + G GP + + + +
Sbjct: 245 DFDWNVAWEKEGDCFARYRVRIEEMRQSLKILRQACEMIPG----GPTENLEARRMAEGK 300
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ I K + +P GE+Y +E+ KGE GV+L + P+R KIRA
Sbjct: 301 GSEFAGFDYQI-VAKKVAPTFKIPNGELYTRLESGKGEIGVFLQGNNDVTPWRFKIRAAD 359
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +LQ + + KG ++AD+ AILGS+D++ G VDR
Sbjct: 360 FTNLQILPHILKGAKVADIMAILGSIDVIMGSVDR 394
>gi|161502529|ref|YP_001569641.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. arizonae serovar 62:z4,z23:-- str.
RSK2980]
gi|218534239|sp|A9MJ99|NUOCD_SALAR RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|160863876|gb|ABX20499.1| hypothetical protein SARI_00573 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 600
Score = 373 bits (958), Expect = e-101, Method: Composition-based stats.
Identities = 149/395 (37%), Positives = 223/395 (56%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +
Sbjct: 210 TDNEDFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 269
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 270 PYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQD 329
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + + P
Sbjct: 330 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWERLLREFLEWMPK 389
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R+ + ++A WG +G +R +G +D+RK +PY Y
Sbjct: 390 RLDSYEKAALRNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKWRPYSGYEN 449
Query: 243 LDFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF++P+ G DCY R ++++ E+R+S++I++QC++ + GP A P PP +
Sbjct: 450 FDFEVPVGGGVSDCYTRVMLKVEELRQSLRILQQCLDNM----PEGPFKADHPLTTPPPK 505
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + VEA KG YL SDG YR ++R P
Sbjct: 506 ERTLQHIETLITHFLQVSWGPVMPAQESFQMVEATKGINSYYLTSDGSTMSYRTRVRTPS 565
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AHLQ + +G ++D+ LGS+D V +VDR
Sbjct: 566 FAHLQQIPSAIRGSLVSDLIVYLGSIDFVMSDVDR 600
>gi|238753752|ref|ZP_04615113.1| NADH-quinone oxidoreductase subunit C/D [Yersinia ruckeri ATCC
29473]
gi|238707988|gb|EEQ00345.1| NADH-quinone oxidoreductase subunit C/D [Yersinia ruckeri ATCC
29473]
Length = 598
Score = 373 bits (958), Expect = e-101, Method: Composition-based stats.
Identities = 149/394 (37%), Positives = 226/394 (57%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP++HG R++L+LDGE + P +G HRG EK+ E +++ +
Sbjct: 209 TENEDFMFLNLGPNHPSSHGAFRIVLQLDGEEIVDCVPDVGYHHRGAEKMGERQSWHSYI 268
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI++P + IRV+ SE+ RI SHLL ++T D
Sbjct: 269 PYTDRIEYLGGCVNEMPYVLAVEKLAGIKVPEKVDTIRVMLSELFRINSHLLYISTFIQD 328
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 329 VGAMTPVFFAFTDRQKVYDVIEAITGFRMHPAWFRIGGVAHDLPRGWERLLRDFLDWMPK 388
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R++ + ++A WG +G +R +G +D+RK +PY Y
Sbjct: 389 RLDSYVKAALQNSILKGRSIGVAAYNSKEALDWGVTGAGLRATGIDFDVRKWRPYSGYEN 448
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+F++PIG +GDCYDR ++++ E+R+S++I+ QC + GP A P PP +
Sbjct: 449 FEFEVPIGNNGDCYDRVMLKVEELRQSLRILEQCYKNM----PEGPFKADHPLTTPPPKE 504
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ +E+LI HF + G +P E + +EA KG YL SDG YR +IR P Y
Sbjct: 505 RTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSY 564
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 565 AHLQQIPSVIRGSLVSDLIVYLGSIDFVMSDVDR 598
>gi|148240650|ref|YP_001226037.1| NAD(P)H-quinone oxidoreductase subunit H [Synechococcus sp. WH
7803]
gi|229891154|sp|A5GP75|NDHH_SYNPW RecName: Full=NAD(P)H-quinone oxidoreductase subunit H; AltName:
Full=NAD(P)H dehydrogenase subunit H; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H;
AltName: Full=NDH-1 subunit H; Short=NDH-H
gi|147849189|emb|CAK24740.1| NAD(P)H-quinone oxidoreductase chain H [Synechococcus sp. WH 7803]
Length = 394
Score = 373 bits (958), Expect = e-101, Method: Composition-based stats.
Identities = 159/395 (40%), Positives = 229/395 (57%), Gaps = 6/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +NFGP HP+ HGVLRL++ LDGE V +P IG LHRG EK+ E +T + V
Sbjct: 5 ETRTEPMVVNFGPHHPSMHGVLRLVVTLDGEDVVDCEPVIGYLHRGMEKIAENRTNVMFV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R+DY A M E A EKL I +P R IRVL E+ RI +HLL + D
Sbjct: 65 PYVSRMDYAAGMFYEAVVVNAPEKLADIPVPKRASYIRVLMLELNRIANHLLWLGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSR-MHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E A+G R ++ YFR GGV D+P +E +CD F
Sbjct: 125 VGAQTPFFYIFREREMIYDLWEAATGQRLINNNYFRIGGVAADLPWGWLEKCRDFCDWFG 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R +G + E+A W SG M+R SG WDLRK YECY
Sbjct: 185 PKIDEYEKLITNNPIFRRRIEGLGVIGKEEAINWSLSGPMLRASGVPWDLRKVDHYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+D+ K GDC+ RY VR+ EMR+S+KI+RQ + + G GP + + + +
Sbjct: 245 DFDWDVAWEKEGDCFARYRVRIEEMRQSLKILRQACDMIPG----GPTENVEARRMAEGK 300
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ + K + +P GE+Y +E+ KGE G+++ + P+R KIRA
Sbjct: 301 DSEFAGFD-YQYVAKKVAPTFKIPNGELYTRLESGKGEIGIFIQGNNDVTPWRFKIRAAD 359
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + + KGH++AD+ AILGS+D++ G VDR
Sbjct: 360 SNNLQILPHILKGHKVADIMAILGSIDVIMGSVDR 394
>gi|261839981|gb|ACX99746.1| NADH dehydrogenase subunit D [Helicobacter pylori 52]
Length = 409
Score = 373 bits (958), Expect = e-101, Method: Composition-based stats.
Identities = 168/394 (42%), Positives = 242/394 (61%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +NFGPQHP++HG LRLILEL+GE + + P IG LHRG EKL E T+ + +
Sbjct: 18 EHDDNQMILNFGPQHPSSHGQLRLILELEGEKIIKATPEIGYLHRGCEKLGENMTYNEYM 77
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DRLDY + + +AYA AVE LL +EIP R Q+IR + E+ R++SH+ ++ A+D
Sbjct: 78 PTTDRLDYTSSTSNNYAYAHAVETLLNLEIPRRAQVIRTILLELNRMISHIFFISVHALD 137
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA++ L+ F+ RE + E G+R+ R GGV D+PP +E + +
Sbjct: 138 VGAMSVFLYAFKTREYGLDLMEDYCGARLTHNAIRIGGVPLDLPPNWLEGLKKFLGEMRE 197
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
I LL NRI++ R N+G V + A WG SG+M+RGSG A+D+RK +PYE Y E
Sbjct: 198 CKKLIQGLLDKNRIWRMRLENVGIVTPKMAQSWGMSGIMLRGSGIAYDIRKEEPYELYKE 257
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LDFD+P+G +GD YDRY + M+E+ ES++II Q + + P+ A +P + +
Sbjct: 258 LDFDVPVGNYGDSYDRYCLYMLEIDESIRIIEQLIPMYAKTD--TPIMAKNPHYISAPKE 315
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
D+ +L+ HF L +G P+GEVYA E+PKGE G ++ S+G P+R KIRAP +
Sbjct: 316 DIMTQNYALMQHFVLVAQGMRPPIGEVYAPTESPKGELGFFIHSEGEPYPHRLKIRAPSF 375
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H+ A+ + G LAD ++GS + VFGEVDR
Sbjct: 376 YHIGALSDILVGQYLADAVTVIGSTNAVFGEVDR 409
>gi|113478174|ref|YP_724235.1| NAD(P)H-quinone oxidoreductase subunit H [Trichodesmium erythraeum
IMS101]
gi|123160086|sp|Q10VG2|NDHH_TRIEI RecName: Full=NAD(P)H-quinone oxidoreductase subunit H; AltName:
Full=NAD(P)H dehydrogenase subunit H; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H;
AltName: Full=NDH-1 subunit H; Short=NDH-H
gi|110169222|gb|ABG53762.1| NADH dehydrogenase (ubiquinone) [Trichodesmium erythraeum IMS101]
Length = 394
Score = 373 bits (958), Expect = e-101, Method: Composition-based stats.
Identities = 166/395 (42%), Positives = 224/395 (56%), Gaps = 6/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ IN GP HP+ HGVLRLI+ LDGE V +P IG LHRG EK+ E +T V
Sbjct: 5 QTRTEPMVINMGPHHPSMHGVLRLIVTLDGEDVIDCEPVIGYLHRGMEKIAENRTNTMFV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R DY A M E A E+L I +P R IRV+ E+ RI +HLL + D
Sbjct: 65 PYVSRWDYAAGMFNEAVTVNAPEQLADIAVPKRASYIRVIMLELNRIANHLLWLGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRM-HAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E A+G RM + YFR GGV D+P V+ +CD F
Sbjct: 125 VGAQTPFFYIFREREMIYDLWEAATGYRMVNNNYFRIGGVAADLPYGWVDKCEDFCDYFL 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R + +G + E+A WG SG M+R SG WDLRK YECY
Sbjct: 185 PKVDEYERLITNNPIFRRRIMGLGVISREEAINWGLSGPMLRASGVKWDLRKVDHYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+++ K GDC RYLVR+ EMRESV IIRQ + L G GP + K +
Sbjct: 245 DFDWEVHWEKDGDCLARYLVRIREMRESVNIIRQAIKGLPG----GPYENLEAKRMAEGP 300
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ K + +P GE Y +E+ KGE G+Y+I D P+R KIRA
Sbjct: 301 KSEWNDFD-YQFLGKKIPPTFKIPKGEHYVRIESGKGEIGIYIIGDNNIFPWRFKIRAAD 359
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +LQ + +G ++AD+ AILGS+DI+ G VDR
Sbjct: 360 FVNLQIFPHILQGAKVADLVAILGSIDIIMGSVDR 394
>gi|72383376|ref|YP_292731.1| NAD(P)H-quinone oxidoreductase subunit H [Prochlorococcus marinus
str. NATL2A]
gi|123620487|sp|Q46HK0|NDHH_PROMT RecName: Full=NAD(P)H-quinone oxidoreductase subunit H; AltName:
Full=NAD(P)H dehydrogenase subunit H; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H;
AltName: Full=NDH-1 subunit H; Short=NDH-H
gi|72003226|gb|AAZ59028.1| NADH dehydrogenase subunit D [Prochlorococcus marinus str. NATL2A]
Length = 394
Score = 373 bits (958), Expect = e-101, Method: Composition-based stats.
Identities = 158/395 (40%), Positives = 226/395 (57%), Gaps = 6/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +NFGP HP+ HGVLRL++ LDGE V +P IG LHRG EK+ E +T + V
Sbjct: 5 ETRTEPMVVNFGPHHPSMHGVLRLVVTLDGEDVVDCEPVIGYLHRGMEKIAENRTNVMFV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R+DY A M E A E+L I++P R IR + E+ RI +HLL + D
Sbjct: 65 PYVSRMDYAAGMFYEAIVVNAPERLANIKVPKRASYIRAIMLELNRIANHLLWLGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSR-MHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E A+G R ++ YFR GGV D+P +E +CD F
Sbjct: 125 VGAQTPFFYIFREREMIYDLWEAATGQRLINNNYFRIGGVACDLPWGWLEKCKDFCDWFG 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R +G + E A W SG M+R +G WDLRK YECY
Sbjct: 185 PKIDEYEKLITNNPIFRRRIEGLGVIGKEQAINWSLSGPMLRAAGVPWDLRKVDHYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ ++DI K GDCY RY VR+ EMR+S+KI+RQ + G + V K+
Sbjct: 245 DFEWDIAWEKEGDCYARYRVRIEEMRQSLKILRQACEMIPGGPTEN---LEAQRTVEGKK 301
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
D+ S + K + +P GE+Y +E+ KGE GV++ + P+R KIRA
Sbjct: 302 GDL--SGFDYQYVAKKVAPTFKIPNGELYTRLESGKGEIGVFIQGNNDVTPWRFKIRAAD 359
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + + KG ++AD+ AILGS+D++ G VDR
Sbjct: 360 SNNLQILPHILKGAKVADIMAILGSIDVIMGSVDR 394
>gi|242239966|ref|YP_002988147.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Dickeya
dadantii Ech703]
gi|242132023|gb|ACS86325.1| NADH dehydrogenase I, D subunit [Dickeya dadantii Ech703]
Length = 599
Score = 373 bits (958), Expect = e-101, Method: Composition-based stats.
Identities = 151/395 (38%), Positives = 224/395 (56%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+N GP HP+AHG R+IL+L+GE + P +G HRG EK+ E +++ +
Sbjct: 209 TSNEDFMFLNLGPNHPSAHGAFRIILQLNGEEIVDCIPDVGYHHRGAEKMGERQSWHSYI 268
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GIE+P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 269 PYTDRIEYLGGCVNEMPYVLAVEKLAGIEVPERVNVIRVMLSELFRINSHLLYISTFIQD 328
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 329 VGAMTPVFFAFTDRQKIYDLVEAITGYRMHPAWFRIGGVAHDLPRGWERLLREFLDWIPG 388
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R + ++A WG +G +R +G A+D+RK +PY Y
Sbjct: 389 RLDTYIKAALENSILKGRTQGVAAYNAKEALEWGVTGAGLRATGVAFDVRKWRPYSGYEN 448
Query: 243 LDFDIPIGK-HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF++P+G DCY R ++++ E+R+S++I+ QC+ + GP A P PP +
Sbjct: 449 FDFEVPVGDGISDCYSRVMLKVEELRQSLRILEQCLKHM----PEGPFKADHPLTTPPPK 504
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI+HF + G +P E Y +EA KG YL SDGG YR +IR P
Sbjct: 505 ERTLQHIETLINHFLQVSWGPVMPANESYQMIEATKGINSYYLTSDGGTMSYRTRIRTPS 564
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ HLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 565 FPHLQQIPSVIRGCLVSDLIVYLGSIDFVMSDVDR 599
>gi|295098075|emb|CBK87165.1| NADH dehydrogenase subunit C /NADH dehydrogenase subunit D
[Enterobacter cloacae subsp. cloacae NCTC 9394]
Length = 600
Score = 373 bits (958), Expect = e-101, Method: Composition-based stats.
Identities = 150/395 (37%), Positives = 223/395 (56%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +
Sbjct: 210 TENEDFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 269
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 270 PYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQD 329
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 330 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPK 389
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L N I K R+ + ++A WG +G +R +G +D+RK++PY Y
Sbjct: 390 RLASYEKAALRNSILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYEN 449
Query: 243 LDFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF++P+ G DCY R ++++ E+R+S++I+ QC+N + GP A P PP +
Sbjct: 450 FDFEVPVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNM----PEGPFKADHPLTTPPPK 505
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + +EA KG YL SDG YR ++R P
Sbjct: 506 ERTLQHIETLITHFLQVSWGPVMPAQESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPS 565
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AHLQ + +G ++D+ LGS+D V +VDR
Sbjct: 566 FAHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR 600
>gi|26248673|ref|NP_754713.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli CFT073]
gi|91211578|ref|YP_541564.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli UTI89]
gi|117624475|ref|YP_853388.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli APEC O1]
gi|218559199|ref|YP_002392112.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli S88]
gi|218690446|ref|YP_002398658.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli ED1a]
gi|227887342|ref|ZP_04005147.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli 83972]
gi|237704760|ref|ZP_04535241.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia sp. 3_2_53FAA]
gi|300983381|ref|ZP_07176565.1| NADH dehydrogenase, D subunit [Escherichia coli MS 45-1]
gi|301049039|ref|ZP_07196024.1| NADH dehydrogenase, D subunit [Escherichia coli MS 185-1]
gi|306814603|ref|ZP_07448765.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli NC101]
gi|331647941|ref|ZP_08349033.1| NADH-quinone oxidoreductase subunit C/D (NADHdehydrogenase I
subunit C/D) (NDH-1 subunit C/D) (NUO3/NUO4)
[Escherichia coli M605]
gi|81475490|sp|Q8FFJ7|NUOCD_ECOL6 RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|122423114|sp|Q1R9D1|NUOCD_ECOUT RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|218528041|sp|A1ADD4|NUOCD_ECOK1 RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|226737313|sp|B7MG50|NUOCD_ECO45 RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|254767805|sp|B7MXG5|NUOCD_ECO81 RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|26109078|gb|AAN81281.1|AE016763_240 NADH dehydrogenase I chain C/D [Escherichia coli CFT073]
gi|91073152|gb|ABE08033.1| NADH dehydrogenase I chain C/D [Escherichia coli UTI89]
gi|115513599|gb|ABJ01674.1| NADH:ubiquinone oxidoreductase, chain C,D [Escherichia coli APEC
O1]
gi|218365968|emb|CAR03712.1| NADH:ubiquinone oxidoreductase, chain C,D [Escherichia coli S88]
gi|218428010|emb|CAR08781.1| NADH:ubiquinone oxidoreductase, chain C,D [Escherichia coli ED1a]
gi|226901126|gb|EEH87385.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia sp. 3_2_53FAA]
gi|227835692|gb|EEJ46158.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli 83972]
gi|281179373|dbj|BAI55703.1| NADH dehydrogenase I chain C/D [Escherichia coli SE15]
gi|294493326|gb|ADE92082.1| NADH-quinone oxidoreductase, C/D subunit [Escherichia coli IHE3034]
gi|300299148|gb|EFJ55533.1| NADH dehydrogenase, D subunit [Escherichia coli MS 185-1]
gi|300408547|gb|EFJ92085.1| NADH dehydrogenase, D subunit [Escherichia coli MS 45-1]
gi|305851997|gb|EFM52449.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli NC101]
gi|307626178|gb|ADN70482.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli UM146]
gi|312946904|gb|ADR27731.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli O83:H1 str. NRG 857C]
gi|315285914|gb|EFU45352.1| NADH dehydrogenase, D subunit [Escherichia coli MS 110-3]
gi|315292241|gb|EFU51593.1| NADH dehydrogenase, D subunit [Escherichia coli MS 153-1]
gi|315298115|gb|EFU57384.1| NADH dehydrogenase, D subunit [Escherichia coli MS 16-3]
gi|320196153|gb|EFW70777.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli WV_060327]
gi|323952079|gb|EGB47953.1| NADH dehydrogenase [Escherichia coli H252]
gi|323956052|gb|EGB51805.1| NADH dehydrogenase [Escherichia coli H263]
gi|330912111|gb|EGH40621.1| NADH-ubiquinone oxidoreductase chain C / NADH-ubiquinone
oxidoreductase chain D [Escherichia coli AA86]
gi|331043665|gb|EGI15803.1| NADH-quinone oxidoreductase subunit C/D (NADHdehydrogenase I
subunit C/D) (NDH-1 subunit C/D) (NUO3/NUO4)
[Escherichia coli M605]
Length = 600
Score = 373 bits (957), Expect = e-101, Method: Composition-based stats.
Identities = 153/395 (38%), Positives = 223/395 (56%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP+AHG R++L+LDGE + P IG HRG EK+ E +++ +
Sbjct: 210 TENEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 269
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 270 PYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQD 329
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 330 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPK 389
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L N I K R+ + ++A WG +G +R +G +D+RK++PY Y
Sbjct: 390 RLASYEKAALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYEN 449
Query: 243 LDFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF+IP+ G DCY R ++++ E+R+S++I+ QC+N + GP A P PP +
Sbjct: 450 FDFEIPVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNM----PEGPFKADHPLTTPPPK 505
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + VEA KG YL SDG YR +IR P
Sbjct: 506 ERTLQHIETLITHFLQVSWGPVMPANESFQMVEATKGINSYYLTSDGSTMSYRTRIRTPS 565
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YAHLQ + +G ++D+ LGS+D V +VDR
Sbjct: 566 YAHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR 600
>gi|215487499|ref|YP_002329930.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli O127:H6 str. E2348/69]
gi|312967584|ref|ZP_07781799.1| NADH-quinone oxidoreductase subunit C/D [Escherichia coli 2362-75]
gi|254767803|sp|B7UFU4|NUOCD_ECO27 RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|215265571|emb|CAS09974.1| NADH: ubiquinone oxidoreductase, chain C, D [Escherichia coli
O127:H6 str. E2348/69]
gi|312287781|gb|EFR15686.1| NADH-quinone oxidoreductase subunit C/D [Escherichia coli 2362-75]
gi|323187989|gb|EFZ73284.1| NADH-quinone oxidoreductase subunit C/D [Escherichia coli RN587/1]
Length = 600
Score = 373 bits (957), Expect = e-101, Method: Composition-based stats.
Identities = 153/395 (38%), Positives = 223/395 (56%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP+AHG R++L+LDGE + P IG HRG EK+ E +++ +
Sbjct: 210 TENEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 269
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 270 PYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQD 329
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 330 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPK 389
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L N I K R+ + ++A WG +G +R +G +D+RK++PY Y
Sbjct: 390 RLASYEKAALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYEN 449
Query: 243 LDFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF+IP+ G DCY R ++++ E+R+S++I+ QC+N + GP A P PP +
Sbjct: 450 FDFEIPVGGGISDCYTRVMLKVEELRQSLRILEQCLNNM----PEGPFKADHPLTTPPPK 505
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + VEA KG YL SDG YR +IR P
Sbjct: 506 ERTLQHIETLITHFLQVSWGPVMPANESFQMVEATKGINSYYLTSDGSTMSYRTRIRTPS 565
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YAHLQ + +G ++D+ LGS+D V +VDR
Sbjct: 566 YAHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR 600
>gi|108563632|ref|YP_627948.1| NADH dehydrogenase subunit D [Helicobacter pylori HPAG1]
gi|123373696|sp|Q1CRZ8|NUOD_HELPH RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|107837405|gb|ABF85274.1| NADH-ubiquinone oxidoreductase chain D [Helicobacter pylori HPAG1]
Length = 409
Score = 373 bits (957), Expect = e-101, Method: Composition-based stats.
Identities = 167/394 (42%), Positives = 242/394 (61%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +NFGPQHP++HG LRLILEL+GE + + P IG LHRG EKL E T+ + +
Sbjct: 18 EHDDNQMILNFGPQHPSSHGQLRLILELEGEKIIKATPEIGYLHRGCEKLGENMTYNEYM 77
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DRLDY + + +AYA AVE LL +EIP R Q+IR + E+ R++SH+ ++ A+D
Sbjct: 78 PTTDRLDYTSSTSNNYAYAYAVETLLNLEIPRRAQVIRTILLELNRMISHIFFISVHALD 137
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA++ L+ F+ RE + E G+R+ R GGV D+PP +E + +
Sbjct: 138 VGAMSVFLYAFKTREYGLDLMEDYCGARLTHNAIRIGGVPLDLPPNWLEGLKKFLGEMRE 197
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
I LL NRI++ R N+G V + A WG SG+M+RG+G A+D+RK +PYE Y E
Sbjct: 198 CKKLIQGLLDKNRIWRMRLENVGVVTQKMAQSWGMSGIMLRGTGIAYDIRKEEPYELYKE 257
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LDFD+P+G +GD YDRY + M+E+ ES++II Q + + P+ A +P + +
Sbjct: 258 LDFDVPVGNYGDSYDRYCLYMLEIDESIRIIEQLIPMYAKTD--TPIMAQNPHYISAPKE 315
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
D+ +L+ HF L +G P+GEVYA E+PKGE G ++ S+G P+R KIRAP +
Sbjct: 316 DIMTQNYALMQHFVLVAQGMRPPIGEVYAPTESPKGELGFFIHSEGEPYPHRLKIRAPSF 375
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H+ A+ + G LAD ++GS + VFGEVDR
Sbjct: 376 YHIGALSDILVGQYLADAVTVIGSTNAVFGEVDR 409
>gi|315587154|gb|ADU41535.1| NADH-quinone oxidoreductase subunit D [Helicobacter pylori 35A]
gi|317182512|dbj|BAJ60296.1| NADH dehydrogenase subunit D [Helicobacter pylori F57]
Length = 409
Score = 373 bits (957), Expect = e-101, Method: Composition-based stats.
Identities = 169/394 (42%), Positives = 241/394 (61%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +NFGPQHP++HG LRLILEL+GE + + P IG LHRG EKL E T+ + +
Sbjct: 18 EHDDNQMILNFGPQHPSSHGQLRLILELEGEKIIKATPEIGYLHRGCEKLGENMTYNEYM 77
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DRLDY + + +AYA AVE LL +EIP R Q+IR + E+ R++SH+ ++ A+D
Sbjct: 78 PTTDRLDYTSSTSNNYAYAHAVETLLNLEIPRRAQVIRTILLELNRMISHIFFISVHALD 137
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA++ L+ F+ RE + E G+R+ R GGV D+PP +E + +
Sbjct: 138 VGAMSVFLYAFKTREYGLDLMEDYCGARLTHNAIRIGGVPLDLPPNWLEGLKKFLGEMRE 197
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
I LL NRI++ R N+G V + A WG SG+M+RGSG A+D+RK +PYE Y E
Sbjct: 198 CKKLIQGLLDKNRIWRMRLENVGVVTPKMAQSWGMSGIMLRGSGIAYDIRKEEPYELYKE 257
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LDFD+P+G +GD YDRY + M+E+ ES++II Q + + P+ A +P + +
Sbjct: 258 LDFDVPVGNYGDSYDRYCLYMLEIDESIRIIEQLIPMYAKTD--TPIMAQNPHYISAPKE 315
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
D+ L+ HF L +G PVGEVYA E+PKGE G ++ S+G P+R KIRAP +
Sbjct: 316 DIMTQNYVLMQHFVLVAQGMRPPVGEVYAPTESPKGELGFFIHSEGEPYPHRLKIRAPSF 375
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H+ A+ + G LAD ++GS + VFGEVDR
Sbjct: 376 YHIGALSDILVGQYLADAVTVIGSTNAVFGEVDR 409
>gi|16761251|ref|NP_456868.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Typhi str. CT18]
gi|16765653|ref|NP_461268.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Typhimurium str. LT2]
gi|29141053|ref|NP_804395.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Typhi str. Ty2]
gi|56412777|ref|YP_149852.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Paratyphi A str. ATCC
9150]
gi|161612946|ref|YP_001586911.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Paratyphi B str. SPB7]
gi|167549675|ref|ZP_02343434.1| NADH-quinone oxidoreductase, C/D subunit [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
gi|167994674|ref|ZP_02575765.1| NADH-quinone oxidoreductase, C/D subunit [Salmonella enterica
subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168229695|ref|ZP_02654753.1| NADH-quinone oxidoreductase, C/D subunit [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|168237343|ref|ZP_02662401.1| NADH-quinone oxidoreductase, C/D subunit [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
gi|168242444|ref|ZP_02667376.1| NADH-quinone oxidoreductase, C/D subunit [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|168261658|ref|ZP_02683631.1| NADH-quinone oxidoreductase, C/D subunit [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|168465971|ref|ZP_02699841.1| NADH-quinone oxidoreductase, C/D subunit [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
gi|168817944|ref|ZP_02829944.1| NADH-quinone oxidoreductase, C/D subunit [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|194448809|ref|YP_002046379.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|194470489|ref|ZP_03076473.1| NADH-quinone oxidoreductase, C/D subunit [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|194736818|ref|YP_002115395.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|197248024|ref|YP_002147284.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|197265050|ref|ZP_03165124.1| NADH-quinone oxidoreductase, C/D subunit [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
gi|197361711|ref|YP_002141347.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Paratyphi A str.
AKU_12601]
gi|198244423|ref|YP_002216396.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|200389266|ref|ZP_03215878.1| NADH-quinone oxidoreductase, C/D subunit [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|204929100|ref|ZP_03220243.1| NADH-quinone oxidoreductase, C/D subunit [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|205353441|ref|YP_002227242.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Gallinarum str. 287/91]
gi|207857744|ref|YP_002244395.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Enteritidis str.
P125109]
gi|213647302|ref|ZP_03377355.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Typhi str. J185]
gi|213853110|ref|ZP_03382642.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Typhi str. M223]
gi|238912395|ref|ZP_04656232.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Tennessee str.
CDC07-0191]
gi|81599847|sp|Q5PN53|NUOCD_SALPA RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|218534242|sp|A9N582|NUOCD_SALPB RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|218534332|sp|B5BCM0|NUOCD_SALPK RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|218534333|sp|B4TPK8|NUOCD_SALSV RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|218534337|sp|B5EZK7|NUOCD_SALA4 RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|25285225|pir||AD0797 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) - Salmonella enterica
subsp. enterica serovar Typhi (strain CT18)
gi|16420867|gb|AAL21227.1| NADH dehydrogenase I chain C,D [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|16503550|emb|CAD07558.1| NADH dehydrogenase I chain C; chain D [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29136679|gb|AAO68244.1| NADH dehydrogenase I chain C [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56127034|gb|AAV76540.1| NADH dehydrogenase I chain C; chain D [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|161362310|gb|ABX66078.1| hypothetical protein SPAB_00652 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194407113|gb|ACF67332.1| NADH-quinone oxidoreductase, C/D subunit [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|194456853|gb|EDX45692.1| NADH-quinone oxidoreductase, C/D subunit [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|194712320|gb|ACF91541.1| NADH-quinone oxidoreductase, C/D subunit [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|195631451|gb|EDX50011.1| NADH-quinone oxidoreductase, C/D subunit [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
gi|197093187|emb|CAR58631.1| NADH dehydrogenase I chain C; chain D [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|197211727|gb|ACH49124.1| NADH-quinone oxidoreductase, C/D subunit [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|197243305|gb|EDY25925.1| NADH-quinone oxidoreductase, C/D subunit [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
gi|197289727|gb|EDY29090.1| NADH-quinone oxidoreductase, C/D subunit [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
gi|197938939|gb|ACH76272.1| NADH-quinone oxidoreductase, C/D subunit [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|199606364|gb|EDZ04909.1| NADH-quinone oxidoreductase, C/D subunit [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|204321644|gb|EDZ06843.1| NADH-quinone oxidoreductase, C/D subunit [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|205273222|emb|CAR38185.1| NADH dehydrogenase I chain C; chain D [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205325294|gb|EDZ13133.1| NADH-quinone oxidoreductase, C/D subunit [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
gi|205327498|gb|EDZ14262.1| NADH-quinone oxidoreductase, C/D subunit [Salmonella enterica
subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205335700|gb|EDZ22464.1| NADH-quinone oxidoreductase, C/D subunit [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|205338263|gb|EDZ25027.1| NADH-quinone oxidoreductase, C/D subunit [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|205344904|gb|EDZ31668.1| NADH-quinone oxidoreductase, C/D subunit [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|205349438|gb|EDZ36069.1| NADH-quinone oxidoreductase, C/D subunit [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|206709547|emb|CAR33892.1| NADH dehydrogenase I chain C; chain D [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|261247532|emb|CBG25359.1| NADH dehydrogenase I chain C [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267994421|gb|ACY89306.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Typhimurium str.
14028S]
gi|301158884|emb|CBW18397.1| NADH dehydrogenase I chain C; chain D [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312913317|dbj|BAJ37291.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Typhimurium str.
T000240]
gi|321222973|gb|EFX48044.1| NADH-ubiquinone oxidoreductase chain C / NADH-ubiquinone
oxidoreductase chain D [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|322617072|gb|EFY13978.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Montevideo str.
315996572]
gi|322617622|gb|EFY14521.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-1]
gi|322624748|gb|EFY21577.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-3]
gi|322630297|gb|EFY27067.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-4]
gi|322634478|gb|EFY31211.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-1]
gi|322639188|gb|EFY35880.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-2]
gi|322640051|gb|EFY36718.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Montevideo str. 531954]
gi|322645728|gb|EFY42252.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322651504|gb|EFY47879.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Montevideo str.
OH_2009072675]
gi|322656063|gb|EFY52362.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322659416|gb|EFY55663.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Montevideo str. 19N]
gi|322665876|gb|EFY62059.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Montevideo str.
81038-01]
gi|322669884|gb|EFY66025.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Montevideo str.
MD_MDA09249507]
gi|322673870|gb|EFY69967.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Montevideo str. 414877]
gi|322678628|gb|EFY74684.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Montevideo str. 366867]
gi|322683576|gb|EFY79590.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Montevideo str. 413180]
gi|322687652|gb|EFY83622.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Montevideo str. 446600]
gi|323130657|gb|ADX18087.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Typhimurium str. 4/74]
gi|323193514|gb|EFZ78719.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Montevideo str.
609458-1]
gi|323198419|gb|EFZ83521.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Montevideo str.
556150-1]
gi|323201933|gb|EFZ86995.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Montevideo str. 609460]
gi|323208529|gb|EFZ93468.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Montevideo str.
507440-20]
gi|323209762|gb|EFZ94686.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Montevideo str. 556152]
gi|323218298|gb|EGA03008.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB101509-0077]
gi|323222945|gb|EGA07294.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB102109-0047]
gi|323227380|gb|EGA11545.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB110209-0055]
gi|323232293|gb|EGA16396.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB111609-0052]
gi|323235673|gb|EGA19757.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009083312]
gi|323244908|gb|EGA28910.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Montevideo str.
315731156]
gi|323250027|gb|EGA33921.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2009159199]
gi|323254950|gb|EGA38741.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008283]
gi|323260330|gb|EGA43949.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008284]
gi|323268094|gb|EGA51571.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008285]
gi|323270813|gb|EGA54251.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008287]
gi|326624147|gb|EGE30492.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Dublin str. 3246]
gi|326628533|gb|EGE34876.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Gallinarum str. 9]
gi|332989259|gb|AEF08242.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Typhimurium str. UK-1]
Length = 600
Score = 373 bits (957), Expect = e-101, Method: Composition-based stats.
Identities = 149/395 (37%), Positives = 223/395 (56%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +
Sbjct: 210 TDNEDFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 269
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 270 PYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQD 329
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + + P
Sbjct: 330 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLEWMPK 389
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R+ + ++A WG +G +R +G +D+RK +PY Y
Sbjct: 390 RLDSYEKAALRNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKWRPYSGYEN 449
Query: 243 LDFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF++P+ G DCY R ++++ E+R+S++I++QC++ + GP A P PP +
Sbjct: 450 FDFEVPVGGGVSDCYTRVMLKVEELRQSLRILQQCLDNM----PEGPFKADHPLTTPPPK 505
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + VEA KG YL SDG YR ++R P
Sbjct: 506 ERTLQHIETLITHFLQVSWGPVMPAQESFQMVEATKGINSYYLTSDGSTMSYRTRVRTPS 565
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AHLQ + +G ++D+ LGS+D V +VDR
Sbjct: 566 FAHLQQIPSAIRGSLVSDLIVYLGSIDFVMSDVDR 600
>gi|15597835|ref|NP_251329.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas aeruginosa PAO1]
gi|107102159|ref|ZP_01366077.1| hypothetical protein PaerPA_01003209 [Pseudomonas aeruginosa PACS2]
gi|116050626|ref|YP_790555.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas aeruginosa UCBPP-PA14]
gi|218891200|ref|YP_002440066.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas aeruginosa LESB58]
gi|296388900|ref|ZP_06878375.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas aeruginosa PAb1]
gi|313107677|ref|ZP_07793859.1| NADH dehydrogenase I chain C,D [Pseudomonas aeruginosa 39016]
gi|81622299|sp|Q9I0J9|NUOCD_PSEAE RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|122259749|sp|Q02ND1|NUOCD_PSEAB RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|9948707|gb|AAG06027.1|AE004692_6 NADH dehydrogenase I chain C,D [Pseudomonas aeruginosa PAO1]
gi|115585847|gb|ABJ11862.1| NADH dehydrogenase I chain C,D [Pseudomonas aeruginosa UCBPP-PA14]
gi|218771425|emb|CAW27192.1| NADH dehydrogenase I chain C,D [Pseudomonas aeruginosa LESB58]
gi|310880361|gb|EFQ38955.1| NADH dehydrogenase I chain C,D [Pseudomonas aeruginosa 39016]
Length = 593
Score = 373 bits (957), Expect = e-101, Method: Composition-based stats.
Identities = 149/393 (37%), Positives = 226/393 (57%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +P
Sbjct: 205 ENEDYMFLNLGPNHPSAHGAFRIILQLDGEEIIDCVPEIGYHHRGAEKMAERQSWHSFIP 264
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ + Y L+VEKL GI++P R +IR++ +E RIL+HLL + T DV
Sbjct: 265 YTDRIDYLGGVMNNLPYVLSVEKLAGIKVPQRVDVIRIMMAEFFRILNHLLYLGTYIQDV 324
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+TP + F +R++ E +G R+H A++R GGV D+P + + + D P
Sbjct: 325 GAMTPVFFTFTDRQRAYKVVEAITGFRLHPAWYRIGGVAHDLPRGWDKLVREFLDWMPKR 384
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L++ N I + R + + ++A WG +G +R +G +DLRK++PY Y
Sbjct: 385 LDEYETAALKNSILRGRTIGVAQYNTKEALEWGTTGAGLRATGCDFDLRKARPYSGYENF 444
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+F++P+ +GD YDR +V+M EMR+S++II QC+ + GP A P PP +
Sbjct: 445 EFEVPLAHNGDAYDRCMVKMGEMRQSLRIIEQCLKNM----PEGPYKADHPLTTPPPKER 500
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ +E+LI HF + G +P E + +EA KG YL SDG YR +IR P +A
Sbjct: 501 TLQHIETLITHFLQVSWGPVMPANEAFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSFA 560
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ + + G +AD+ A LGS+D V +VDR
Sbjct: 561 HLQQIPSVINGSMIADLIAYLGSIDFVMADVDR 593
>gi|254431998|ref|ZP_05045701.1| NADH dehydrogenase i domain protein [Cyanobium sp. PCC 7001]
gi|197626451|gb|EDY39010.1| NADH dehydrogenase i domain protein [Cyanobium sp. PCC 7001]
Length = 394
Score = 373 bits (957), Expect = e-101, Method: Composition-based stats.
Identities = 160/395 (40%), Positives = 231/395 (58%), Gaps = 6/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +NFGP HP+ HGVLRL++ LDGE V +P IG LHRG EK+ E +T + V
Sbjct: 5 ETRTEPMVVNFGPHHPSMHGVLRLVVTLDGEDVVDCEPVIGYLHRGMEKIAENRTNVMFV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R+DY A M E A E+L +++P R IRVL E+ RI +HLL + D
Sbjct: 65 PYVSRMDYAAGMFYEAIVVNAPERLADVQVPRRASYIRVLMLELNRIANHLLWLGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSR-MHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E A+G R ++ YFR GGV D+P +E +CD F
Sbjct: 125 VGAQTPFFYIFREREMIYDLWEAATGQRLINNNYFRIGGVAADLPYGWLEKCLDFCDWFG 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R +GT+ E+A W SG M+R SG WDLRK YECY
Sbjct: 185 PKIDEYEKLITNNPIFRRRIEGLGTITREEAINWSLSGPMLRASGVPWDLRKVDHYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+ + + GDC+ RY VR+ EMRES+KI+RQ + G GP + + + + +
Sbjct: 245 DFDWAVACEQEGDCFARYRVRIQEMRESLKILRQACAMIPG----GPTESLEARRMAEGK 300
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
S L + K + +P GE+Y +E+ KGE GV++ + P+R KIRA
Sbjct: 301 GG-DSSGFDLQYVAKKVAPTFKIPSGELYTRLESGKGEIGVFIQGNDDVTPWRFKIRAAD 359
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + + KGH++AD+ AILGS+D++ G VDR
Sbjct: 360 QNNLQILPHILKGHKVADIMAILGSIDVIMGSVDR 394
>gi|227494506|ref|ZP_03924822.1| NADH dehydrogenase (quinone) [Actinomyces coleocanis DSM 15436]
gi|226832240|gb|EEH64623.1| NADH dehydrogenase (quinone) [Actinomyces coleocanis DSM 15436]
Length = 449
Score = 373 bits (957), Expect = e-101, Method: Composition-based stats.
Identities = 173/414 (41%), Positives = 232/414 (56%), Gaps = 19/414 (4%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
++K + +N GP HP+ HGVLR+ILE+DGE V + G LH G EK +E +T+ Q
Sbjct: 37 IEKISNERIVLNLGPVHPSTHGVLRVILEIDGETVRESRLNTGYLHTGIEKNMEYRTWTQ 96
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTT 118
V + R+DYVAP+ E Y AVEKLL I +P R IR+L E+ RI SHL+ + +
Sbjct: 97 GVTFCTRMDYVAPLFNEAVYVKAVEKLLNITDQVPQRANWIRILLMELNRIASHLVAIGS 156
Query: 119 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
++GA T F ERE+++ ER +G RM+ AY RPGGV QDIP I
Sbjct: 157 GGNELGATTMMTIAFREREEILRILERITGLRMNHAYMRPGGVAQDIPEGTTAYIRELLP 216
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
+ ++ DL N IFK R+VN+G + L G +G +R +G DLRK+QPY
Sbjct: 217 KIRKGIGELQDLTQENPIFKLRHVNVGYMSLPAMMALGMTGPCLRAAGLPLDLRKTQPYW 276
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
Y +L+FD+P+ D Y+R VR E +S++II QC+ L PV DP I
Sbjct: 277 GYDQLEFDVPVRDQSDAYNRVQVRFDECYQSLRIINQCLAHLDETEGE-PVMVQDPAIKW 335
Query: 299 PK----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGV 342
P R M SMESLIHHFKL TEG+ VP G+VY VE KG G
Sbjct: 336 PAQLSVSTDGQGNSLEHIREIMGHSMESLIHHFKLVTEGFKVPAGQVYETVEHAKGIIGC 395
Query: 343 YLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +S+GG +PYR R P +++LQ+ + +G QLADV L S+D V G VDR
Sbjct: 396 HAVSEGGTRPYRVHFRDPSFSNLQSFAMMTEGGQLADVVVSLASIDPVLGGVDR 449
>gi|222034042|emb|CAP76783.1| NadH-quinone oxidoreductase subunit C/D [Escherichia coli LF82]
gi|307554348|gb|ADN47123.1| NADH dehydrogenase I chain C/D [Escherichia coli ABU 83972]
Length = 596
Score = 373 bits (957), Expect = e-101, Method: Composition-based stats.
Identities = 153/395 (38%), Positives = 223/395 (56%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP+AHG R++L+LDGE + P IG HRG EK+ E +++ +
Sbjct: 206 TENEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 265
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 266 PYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQD 325
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 326 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPK 385
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L N I K R+ + ++A WG +G +R +G +D+RK++PY Y
Sbjct: 386 RLASYEKAALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYEN 445
Query: 243 LDFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF+IP+ G DCY R ++++ E+R+S++I+ QC+N + GP A P PP +
Sbjct: 446 FDFEIPVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNM----PEGPFKADHPLTTPPPK 501
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + VEA KG YL SDG YR +IR P
Sbjct: 502 ERTLQHIETLITHFLQVSWGPVMPANESFQMVEATKGINSYYLTSDGSTMSYRTRIRTPS 561
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YAHLQ + +G ++D+ LGS+D V +VDR
Sbjct: 562 YAHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR 596
>gi|194442956|ref|YP_002041586.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|218534331|sp|B4SYZ7|NUOCD_SALNS RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|194401619|gb|ACF61841.1| NADH-quinone oxidoreductase, C/D subunit [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
Length = 600
Score = 373 bits (957), Expect = e-101, Method: Composition-based stats.
Identities = 149/395 (37%), Positives = 223/395 (56%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +
Sbjct: 210 TDNEDFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 269
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 270 PYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQD 329
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + + P
Sbjct: 330 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLEWMPK 389
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R+ + ++A WG +G +R +G +D+RK +PY Y
Sbjct: 390 RLDSYEKAALRNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKWRPYSGYEN 449
Query: 243 LDFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF++P+ G DCY R ++++ E+R+S++I++QC++ + GP A P PP +
Sbjct: 450 FDFEVPVGGGVSDCYTRVMLKVEELRQSLRILQQCLDNM----PEGPFKADHPLTTPPPK 505
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + VEA KG YL SDG YR ++R P
Sbjct: 506 ERTLQHIETLITHFLQVSWGPVMPAQESFQMVEATKGINSYYLTSDGSTMSYRTRVRTPS 565
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AHLQ + +G ++D+ LGS+D V +VDR
Sbjct: 566 FAHLQQIPSAIRGSLVSDLIVYLGSIDFVMSDVDR 600
>gi|152985448|ref|YP_001347932.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas aeruginosa PA7]
gi|218528052|sp|A6V4E7|NUOCD_PSEA7 RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|150960606|gb|ABR82631.1| NADH dehydrogenase I chain C,D [Pseudomonas aeruginosa PA7]
Length = 593
Score = 373 bits (957), Expect = e-101, Method: Composition-based stats.
Identities = 149/393 (37%), Positives = 226/393 (57%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +P
Sbjct: 205 ENEDYMFLNLGPNHPSAHGAFRIILQLDGEEIIDCVPEIGYHHRGAEKMAERQSWHSFIP 264
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ + Y L+VEKL GI++P R +IR++ +E RIL+HLL + T DV
Sbjct: 265 YTDRIDYLGGVMNNLPYVLSVEKLAGIKVPQRVDVIRIMMAEFFRILNHLLYLGTYIQDV 324
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+TP + F +R++ E +G R+H A++R GGV D+P + + + D P
Sbjct: 325 GAMTPVFFTFTDRQRAYKVVEAITGFRLHPAWYRIGGVAHDLPRGWDKLVREFLDWMPKR 384
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L++ N I + R + + ++A WG +G +R +G +DLRK++PY Y
Sbjct: 385 LDEYETAALKNSILRGRTIGVAQYNTKEALEWGTTGAGLRATGCDFDLRKARPYSGYENF 444
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+F++P+ +GD YDR +V+M EMR+S++II QC+ + GP A P PP +
Sbjct: 445 EFEVPLAHNGDAYDRCMVKMGEMRQSLRIIEQCLKNM----PEGPYKADHPLTTPPPKER 500
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ +E+LI HF + G +P E + +EA KG YL SDG YR +IR P +A
Sbjct: 501 TLQHIETLITHFLQVSWGPVMPANEAFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSFA 560
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ + + G +AD+ A LGS+D V +VDR
Sbjct: 561 HLQQIPSVINGSMIADLIAYLGSIDFVMADVDR 593
>gi|124024960|ref|YP_001014076.1| NAD(P)H-quinone oxidoreductase subunit H [Prochlorococcus marinus
str. NATL1A]
gi|229891148|sp|A2C001|NDHH_PROM1 RecName: Full=NAD(P)H-quinone oxidoreductase subunit H; AltName:
Full=NAD(P)H dehydrogenase subunit H; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H;
AltName: Full=NDH-1 subunit H; Short=NDH-H
gi|123960028|gb|ABM74811.1| putative NADH dehydrogenase subunit [Prochlorococcus marinus str.
NATL1A]
Length = 394
Score = 373 bits (957), Expect = e-101, Method: Composition-based stats.
Identities = 158/395 (40%), Positives = 226/395 (57%), Gaps = 6/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +NFGP HP+ HGVLRL++ LDGE V +P IG LHRG EK+ E +T + V
Sbjct: 5 ETRTEPMVVNFGPHHPSMHGVLRLVVTLDGEDVVDCEPVIGYLHRGMEKIAENRTNVMFV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R+DY A M E A E+L I++P R IR + E+ RI +HLL + D
Sbjct: 65 PYVSRMDYAAGMFYEAIVVNAPERLANIKVPKRASYIRAIMLELNRIANHLLWLGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSR-MHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E A+G R ++ YFR GGV D+P +E +CD F
Sbjct: 125 VGAQTPFFYIFREREMIYDLWEAATGQRLINNNYFRIGGVACDLPWGWLEKCKDFCDWFG 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R +G + E A W SG M+R +G WDLRK YECY
Sbjct: 185 PKIDEYEKLITNNPIFRRRIEGLGVIGKEQAINWSLSGPMLRAAGVPWDLRKVDHYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ ++DI K GDCY RY VR+ EMR+S+KI+RQ + G + V K+
Sbjct: 245 DFEWDIAWEKEGDCYARYRVRIEEMRQSLKILRQACEMIPGGPTEN---LEAQRTVEGKK 301
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
D+ S + K + +P GE+Y +E+ KGE GV++ + P+R KIRA
Sbjct: 302 GDL--SGFDYQYVAKKVAPTFKIPNGELYTRLESGKGEIGVFIQGNNDVTPWRFKIRAAD 359
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + + KG ++AD+ AILGS+D++ G VDR
Sbjct: 360 SNNLQILPHILKGAKVADIMAILGSIDVIMGSVDR 394
>gi|212288021|sp|P0A1Y7|NUOCD_SALTI RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|212288022|sp|P0A1Y6|NUOCD_SALTY RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|218534349|sp|B5FPG7|NUOCD_SALDC RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|218534350|sp|B5R307|NUOCD_SALEP RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|218534351|sp|B5RCF1|NUOCD_SALG2 RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|218534352|sp|B4TBJ2|NUOCD_SALHS RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|320086760|emb|CBY96532.1| NADH dehydrogenase I chain C, D [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
gi|323241166|gb|EGA25202.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009085258]
Length = 596
Score = 373 bits (957), Expect = e-101, Method: Composition-based stats.
Identities = 149/395 (37%), Positives = 223/395 (56%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +
Sbjct: 206 TDNEDFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 265
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 266 PYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQD 325
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + + P
Sbjct: 326 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLEWMPK 385
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R+ + ++A WG +G +R +G +D+RK +PY Y
Sbjct: 386 RLDSYEKAALRNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKWRPYSGYEN 445
Query: 243 LDFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF++P+ G DCY R ++++ E+R+S++I++QC++ + GP A P PP +
Sbjct: 446 FDFEVPVGGGVSDCYTRVMLKVEELRQSLRILQQCLDNM----PEGPFKADHPLTTPPPK 501
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + VEA KG YL SDG YR ++R P
Sbjct: 502 ERTLQHIETLITHFLQVSWGPVMPAQESFQMVEATKGINSYYLTSDGSTMSYRTRVRTPS 561
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AHLQ + +G ++D+ LGS+D V +VDR
Sbjct: 562 FAHLQQIPSAIRGSLVSDLIVYLGSIDFVMSDVDR 596
>gi|296103967|ref|YP_003614113.1| NADH:ubiquinone oxidoreductase, chain C,D [Enterobacter cloacae
subsp. cloacae ATCC 13047]
gi|295058426|gb|ADF63164.1| NADH:ubiquinone oxidoreductase, chain C,D [Enterobacter cloacae
subsp. cloacae ATCC 13047]
Length = 600
Score = 373 bits (957), Expect = e-101, Method: Composition-based stats.
Identities = 150/395 (37%), Positives = 223/395 (56%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +
Sbjct: 210 TENEDFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 269
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 270 PYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQD 329
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 330 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPK 389
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L N I K R+ + ++A WG +G +R +G +D+RK++PY Y
Sbjct: 390 RLASYEKAALRNSILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYEN 449
Query: 243 LDFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF++P+ G DCY R ++++ E+R+S++I+ QC+N + GP A P PP +
Sbjct: 450 FDFEVPVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNM----PEGPFKADHPLTTPPPK 505
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + +EA KG YL SDG YR ++R P
Sbjct: 506 ERTLQHIETLITHFLQVSWGPVMPAQESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPS 565
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AHLQ + +G ++D+ LGS+D V +VDR
Sbjct: 566 FAHLQQIPSAIRGSLVSDLIVYLGSIDFVMSDVDR 600
>gi|312112609|ref|YP_003990925.1| NADH dehydrogenase I, D subunit [Geobacillus sp. Y4.1MC1]
gi|311217710|gb|ADP76314.1| NADH dehydrogenase I, D subunit [Geobacillus sp. Y4.1MC1]
Length = 366
Score = 373 bits (957), Expect = e-101, Method: Composition-based stats.
Identities = 159/391 (40%), Positives = 222/391 (56%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RLIL++DGE ++ P IG LHRGTEKL E+ + Q +PY
Sbjct: 3 RTEEMILNVGPQHPSTHGVFRLILKIDGEKIQEATPVIGYLHRGTEKLAESLQYTQIIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY++ M + AVE ++GIE+P R + +RVL E+GRI SHL+ T +D+G
Sbjct: 63 TDRMDYLSAMTNNYVICHAVETMMGIEVPERAEYLRVLAMELGRIASHLVWWGTYLLDLG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A +P L+ F ERE ++ SG+R+ Y R GGV D P VE + + L
Sbjct: 123 ATSPFLYAFREREMIINLLNELSGARLTFNYMRIGGVKWDAPDGWVEKVKRFVPYMREKL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
DL+TGN IF +R +G E+A + SGV +R +G WDLRK +PY Y D
Sbjct: 183 AGYHDLVTGNEIFLRRVTGVGKYTKEEAINYSLSGVNLRCTGVKWDLRKDEPYSIYDRFD 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FD+P+ + GDC+ RY R+ E+ ES+KII Q + K G + P+I+
Sbjct: 243 FDVPVREEGDCFARYECRLAEIEESLKIIEQACEQFP---KSGEIMGKVPRII------- 292
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE + +E+P+GE G Y+ SDG +PYR K R P + +
Sbjct: 293 ------------------KAPPGETFVRIESPRGEIGCYIASDGKKEPYRIKFRRPSFYN 334
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L KG +A+V AILGS+DIV GEVD
Sbjct: 335 LQILPKLLKGENIANVIAILGSIDIVLGEVD 365
>gi|24372605|ref|NP_716647.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Shewanella
oneidensis MR-1]
gi|81589370|sp|Q8EI31|NUOCD_SHEON RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|24346630|gb|AAN54092.1|AE015546_9 NADH dehydrogenase I, C/D subunits [Shewanella oneidensis MR-1]
Length = 601
Score = 373 bits (957), Expect = e-101, Method: Composition-based stats.
Identities = 154/394 (39%), Positives = 224/394 (56%), Gaps = 5/394 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+AHG RL+L+LDGE V P IG HRG EK+ E +++ +P
Sbjct: 212 ENEDYMFLNLGPNHPSAHGAFRLVLQLDGEEVRNCVPDIGYHHRGAEKMGERQSWHSYIP 271
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR++Y+ + Y LAVEKL GI++P R +IRV+ +E+ RI SHLL + T DV
Sbjct: 272 YTDRVEYLGGVMNNLPYVLAVEKLAGIKVPQRVDMIRVMMAELFRIQSHLLFLGTYIQDV 331
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCW-CDSFPS 182
GA+TP + F +R+ + E +G+RMH A+FR GGV D+P + P
Sbjct: 332 GAMTPVFFTFTDRQHIYTIIEAITGARMHPAWFRIGGVAHDLPKGWQRLVQDNLLSWLPK 391
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L D N I + R + + E A WG +G +R +G +D+RK +PY Y +
Sbjct: 392 RLMDYEKAAMRNSILRGRTIGVAAYTTEQALAWGTTGAGLRATGLNFDVRKWRPYSGYEQ 451
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF++P+G +GD YDR VR+ E+R+S++II QC+N + GP A P PP +
Sbjct: 452 FDFEVPVGSNGDAYDRATVRIEEIRQSMRIIEQCMNNM----PEGPFKADHPLTTPPPKE 507
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ +E+LI+HF + G +P E + +EA KG YL SDG YR +IR P +
Sbjct: 508 RTLQHIETLINHFLQVSWGPVMPAAESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSF 567
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ + + KG ++D+ LGS+D V +VDR
Sbjct: 568 AHLQQIPSVIKGSMVSDLIVYLGSIDFVMSDVDR 601
>gi|208435157|ref|YP_002266823.1| NADH-ubiquinone oxidoreductase chain D [Helicobacter pylori G27]
gi|217032324|ref|ZP_03437820.1| hypothetical protein HPB128_132g22 [Helicobacter pylori B128]
gi|298735713|ref|YP_003728238.1| NADH dehydrogenase I subunit D [Helicobacter pylori B8]
gi|308185011|ref|YP_003929144.1| NADH dehydrogenase subunit D [Helicobacter pylori SJM180]
gi|229891397|sp|B5Z8Q8|NUOD_HELPG RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|208433086|gb|ACI27957.1| NADH-ubiquinone oxidoreductase chain D [Helicobacter pylori G27]
gi|216945990|gb|EEC24604.1| hypothetical protein HPB128_132g22 [Helicobacter pylori B128]
gi|298354902|emb|CBI65774.1| NADH dehydrogenase I chain D [Helicobacter pylori B8]
gi|308060931|gb|ADO02827.1| NADH dehydrogenase subunit D [Helicobacter pylori SJM180]
gi|317013051|gb|ADU83659.1| NADH dehydrogenase subunit D [Helicobacter pylori Lithuania75]
Length = 409
Score = 372 bits (956), Expect = e-101, Method: Composition-based stats.
Identities = 167/394 (42%), Positives = 242/394 (61%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +NFGPQHP++HG LRLILEL+GE + + P IG LHRG EKL E T+ + +
Sbjct: 18 EHDDNQMILNFGPQHPSSHGQLRLILELEGEKIIKATPEIGYLHRGCEKLGENMTYNEYM 77
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DRLDY + + +AYA AVE LL +EIP R Q+IR + E+ R++SH+ ++ A+D
Sbjct: 78 PTTDRLDYTSSTSNNYAYAYAVETLLNLEIPRRAQVIRTILLELNRMISHIFFISVHALD 137
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA++ L+ F+ RE + E G+R+ R GGV D+PP +E + +
Sbjct: 138 VGAMSVFLYAFKTREYGLDLMEDYCGARLTHNAIRIGGVPLDLPPNWLEGLKKFLGEMRE 197
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
I LL NRI++ R N+G V + A WG SG+M+RG+G A+D+RK +PYE Y E
Sbjct: 198 CKKLIQGLLDKNRIWRMRLENVGVVTPKMAQSWGMSGIMLRGTGIAYDIRKEEPYELYKE 257
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LDFD+P+G +GD YDRY + M+E+ ES++II Q + + P+ A +P + +
Sbjct: 258 LDFDVPVGNYGDSYDRYCLYMLEIDESIRIIEQLIPMYAKTD--TPIMAQNPHYISAPKE 315
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
D+ +L+ HF L +G P+GEVYA E+PKGE G ++ S+G P+R KIRAP +
Sbjct: 316 DIMTQNYALMQHFVLVAQGMRPPIGEVYAPTESPKGELGFFIHSEGEPYPHRLKIRAPSF 375
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H+ A+ + G LAD ++GS + VFGEVDR
Sbjct: 376 YHIGALSDILVGQYLADAVTVIGSTNAVFGEVDR 409
>gi|295400697|ref|ZP_06810674.1| NADH dehydrogenase I, D subunit [Geobacillus thermoglucosidasius
C56-YS93]
gi|294977278|gb|EFG52879.1| NADH dehydrogenase I, D subunit [Geobacillus thermoglucosidasius
C56-YS93]
Length = 366
Score = 372 bits (956), Expect = e-101, Method: Composition-based stats.
Identities = 159/391 (40%), Positives = 222/391 (56%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RLIL++DGE ++ P IG LHRGTEKL E+ + Q +PY
Sbjct: 3 RTEEMILNVGPQHPSTHGVFRLILKIDGEKIQEATPVIGYLHRGTEKLAESLQYTQIIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY++ M + AVE ++GIE+P R + +RVL E+GRI SHL+ T +D+G
Sbjct: 63 TDRMDYLSAMTNNYVICHAVETMMGIEVPERAEYLRVLAMELGRIASHLVWWGTYLLDLG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A +P L+ F ERE ++ SG+R+ Y R GGV D P VE + + L
Sbjct: 123 ATSPFLYAFREREMIINLLNELSGARLTFNYMRIGGVKWDAPDGWVEKVKRFVPYMREKL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
DL+TGN IF +R +G E+A + SGV +R +G WDLRK +PY Y D
Sbjct: 183 AGYHDLVTGNEIFLRRVTGVGKYTKEEAVNYSLSGVNLRCTGVKWDLRKDEPYSIYDRFD 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FD+P+ + GDC+ RY R+ E+ ES+KII Q + K G + P+I+
Sbjct: 243 FDVPVREEGDCFARYECRLAEIEESLKIIEQACEQFP---KSGEIMGKVPRII------- 292
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE + +E+P+GE G Y+ SDG +PYR K R P + +
Sbjct: 293 ------------------KAPPGETFVRIESPRGEIGCYIASDGKKEPYRIKFRRPSFYN 334
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L KG +A+V AILGS+DIV GEVD
Sbjct: 335 LQILPKLLKGENIANVIAILGSIDIVLGEVD 365
>gi|113954025|ref|YP_731836.1| NAD(P)H-quinone oxidoreductase subunit H [Synechococcus sp. CC9311]
gi|123031544|sp|Q0I6T6|NDHH_SYNS3 RecName: Full=NAD(P)H-quinone oxidoreductase subunit H; AltName:
Full=NAD(P)H dehydrogenase subunit H; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H;
AltName: Full=NDH-1 subunit H; Short=NDH-H
gi|113881376|gb|ABI46334.1| NADH dehydrogenase I chain 7 (or D) [Synechococcus sp. CC9311]
Length = 394
Score = 372 bits (956), Expect = e-101, Method: Composition-based stats.
Identities = 159/395 (40%), Positives = 229/395 (57%), Gaps = 6/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +NFGP HP+ HGVLRL++ LDGE V +P IG LHRG EK+ E +T + V
Sbjct: 5 ETRTEPMVVNFGPHHPSMHGVLRLVVTLDGEDVVDCEPVIGYLHRGMEKIAENRTNVMYV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R+DY A M E A E+L I +P R IRVL E+ RI +HLL + D
Sbjct: 65 PYVSRMDYAAGMFYEAIVVNAPERLANIPVPKRASYIRVLMLELNRIANHLLWLGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSR-MHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E A+G R ++ YFR GGV D+P +E +CD F
Sbjct: 125 VGAQTPFFYIFREREMIYDLWEAATGQRLINNNYFRIGGVAADLPWGWLEKCKDFCDWFG 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R +G + E+A W SG M+R SG WDLRK YECY
Sbjct: 185 PKIDEYEKLITNNPIFRRRIEGLGVIGREEAINWSLSGPMLRASGVPWDLRKVDHYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+D+ K GDC+ RY VR+ EMR+S+KI+RQ + + G GP + + +
Sbjct: 245 DFDWDVASEKEGDCFARYRVRIEEMRQSLKILRQACDMIPG----GPTENLEAHRMAEGK 300
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ + K + +P GE+Y+ +E+ KGE GV++ + P+R KIRA
Sbjct: 301 DSAFAGFD-YQYVAKKVAPTFKIPNGELYSRLESGKGEIGVFIQGNNDVTPWRFKIRAAD 359
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + + KGH++AD+ AILGS+D++ G VDR
Sbjct: 360 SNNLQILPHILKGHKVADIMAILGSIDVIMGSVDR 394
>gi|238897507|ref|YP_002923186.1| NADH dehydrogenase I chain C, D [Candidatus Hamiltonella defensa
5AT (Acyrthosiphon pisum)]
gi|229465264|gb|ACQ67038.1| NADH dehydrogenase I chain C, D [Candidatus Hamiltonella defensa
5AT (Acyrthosiphon pisum)]
Length = 599
Score = 372 bits (956), Expect = e-101, Method: Composition-based stats.
Identities = 152/395 (38%), Positives = 225/395 (56%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP++HG R++L+LDGE + P IG HRG EK+ E +++ +
Sbjct: 209 TQNEDFMFLNLGPNHPSSHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMAERQSWHSYI 268
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R + IRV+ SE+ RI SHLL ++T D
Sbjct: 269 PYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVKSIRVMLSELFRINSHLLYISTFIQD 328
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV QD+P + + + D P
Sbjct: 329 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAQDLPQGWEKLLRTFLDWMPK 388
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
LN N I K R++ I + DA WG +G +R +G +D+RK +PY Y
Sbjct: 389 RLNSYVKAALENSILKGRSMGIASYNASDALAWGVTGAGLRATGIEFDVRKWRPYSGYEH 448
Query: 243 LDFDIPIGK-HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+FD+P+G DCY R ++++ E+R+S++I+ QC GP A P PP +
Sbjct: 449 FEFDVPVGYGQSDCYTRVMLKVEEIRQSMRILEQC----YQHMPAGPFKADHPLTTPPPK 504
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + +EA KG YL SDGG YR ++R P
Sbjct: 505 ERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGGTMSYRTRVRTPS 564
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AHLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 565 FAHLQQIPSVIRGSLVSDLIVYLGSIDFVMSDVDR 599
>gi|146312472|ref|YP_001177546.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Enterobacter sp. 638]
gi|218528044|sp|A4WCR5|NUOCD_ENT38 RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|145319348|gb|ABP61495.1| NADH dehydrogenase subunit D / NADH dehydrogenase subunit C
[Enterobacter sp. 638]
Length = 595
Score = 372 bits (956), Expect = e-101, Method: Composition-based stats.
Identities = 149/395 (37%), Positives = 224/395 (56%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP++HG R+IL+LDGE + P IG HRG EK+ E +++ +
Sbjct: 205 TENEDFMFLNLGPNHPSSHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 264
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 265 PYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQD 324
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + + D P
Sbjct: 325 VGAMTPVFFAFTDRQKIYDVVEAITGFRMHPAWFRIGGVAHDLPRGWDKLLRDFLDWMPK 384
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I R+ + ++A WG +G +R +G +D+RK++PY Y
Sbjct: 385 RLDSYEKAALRNTILIARSKGVAAYGAKEALDWGCTGAALRATGIDFDVRKARPYSGYEN 444
Query: 243 LDFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF++P+ G DCY R ++++ E+R+S++I+ QC+N + GP A P PP +
Sbjct: 445 FDFEVPVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNM----PEGPFKADHPLTTPPPK 500
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + +EA KG YL SDG YR +IR P
Sbjct: 501 ERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPS 560
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AHLQ + +G ++D+ LGS+D V +VDR
Sbjct: 561 FAHLQQIPVAVRGSLVSDLIVHLGSIDFVMSDVDR 595
>gi|15616776|ref|NP_239988.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Buchnera
aphidicola str. APS (Acyrthosiphon pisum)]
gi|11133959|sp|P57254|NUOCD_BUCAI RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|25285224|pir||B84948 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain C / D
[imported] - Buchnera sp. (strain APS)
gi|10038839|dbj|BAB12874.1| NADH dehydrogenase I chain C / D [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
Length = 600
Score = 372 bits (956), Expect = e-101, Method: Composition-based stats.
Identities = 143/391 (36%), Positives = 222/391 (56%), Gaps = 5/391 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GP HP+AHG R++L+LDGE + P IG HRG EK+ E +++ +PY D
Sbjct: 214 EFMFLNLGPNHPSAHGAFRIVLQLDGENIVDCVPDIGYHHRGAEKMAERQSWHSYIPYTD 273
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R++Y+ E Y LAVEKL I +P + ++IRV+ SE+ RI SHLL ++T DVG +
Sbjct: 274 RIEYLGGCVNELPYVLAVEKLANISVPEKAEVIRVMMSELFRINSHLLYISTFIQDVGCM 333
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP + F +R+K+ E +G+RMH A+FR GGV D+P + + D P L
Sbjct: 334 TPVFFAFTDRQKIYDLIEAITGARMHPAWFRIGGVANDLPQGWNILLKEFLDWMPKRLKY 393
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ N I R+ I ++A WG +G +R +G +D+RK +PY Y F+
Sbjct: 394 YINTALKNSILIHRSKGIAEYNKKEALQWGVTGAGLRATGLNFDVRKWRPYSGYQNYTFE 453
Query: 247 IPIGK-HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+P+G DCY R ++++ E+ +S+ I++QC+ + GP + D PP + +
Sbjct: 454 VPVGSGISDCYSRVMIKVEEIYQSLFILKQCLCNM----PSGPFKSEDSLTTPPSKECVL 509
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
+++E++I HF + G +P E + +EA KG YLISDGG YR +IR P + HL
Sbjct: 510 QNIETMITHFLQVSWGPVIPENESFQMIEATKGINSYYLISDGGTMSYRTRIRTPSFPHL 569
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Q + + +G ++D+ LGS+D V +VDR
Sbjct: 570 QQIPSVIRGSLISDLIVYLGSIDFVMSDVDR 600
>gi|318040653|ref|ZP_07972609.1| NAD(P)H-quinone oxidoreductase subunit H [Synechococcus sp. CB0101]
Length = 394
Score = 372 bits (956), Expect = e-101, Method: Composition-based stats.
Identities = 159/395 (40%), Positives = 228/395 (57%), Gaps = 6/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +NFGP HP+ HGVLRL++ LDGE V +P IG LHRG EK+ E +T + V
Sbjct: 5 ETRTEPMVVNFGPHHPSMHGVLRLVVTLDGEDVVDCEPVIGYLHRGMEKIAENRTNVMFV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R+DY A M E A E+L + +P R IRVL E+ RI +HLL + D
Sbjct: 65 PYVSRMDYAAGMFYEAIVVNAPERLADVPVPKRASYIRVLMLELNRIANHLLWLGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSR-MHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E A+G R ++ YFR GGV D+P +E +CD F
Sbjct: 125 VGAQTPFFYIFREREMIYDLWEAATGQRLINNNYFRIGGVAADLPYGWLEKCLDFCDWFG 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R +GT+ E A W SG M+R SG WDLRK YECY
Sbjct: 185 PKIDEYEKLITNNPIFRKRIEGLGTITREQAINWSLSGPMLRASGVPWDLRKVDHYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+D+ K GDC+ RY VR+ EMR+S+KI+RQ + G GP + + + +
Sbjct: 245 DFDWDVAWEKEGDCFARYRVRIEEMRQSLKILRQACAMIPG----GPTEHLEARRMAEGK 300
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ I K + +P GE+Y +E+ KGE GV++ + P+R KIRA
Sbjct: 301 TSEFAGFDYQI-VAKKVAPTFKIPGGELYTRLESGKGEIGVFIQGNDDVTPWRFKIRAAD 359
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +LQ + + KG ++AD+ AILGS+D++ G VDR
Sbjct: 360 FNNLQILPHILKGAKVADIMAILGSIDVIMGSVDR 394
>gi|254241071|ref|ZP_04934393.1| NADH dehydrogenase I chain C,D [Pseudomonas aeruginosa 2192]
gi|126194449|gb|EAZ58512.1| NADH dehydrogenase I chain C,D [Pseudomonas aeruginosa 2192]
Length = 593
Score = 372 bits (956), Expect = e-101, Method: Composition-based stats.
Identities = 149/393 (37%), Positives = 226/393 (57%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +P
Sbjct: 205 ENEDYMFLNLGPNHPSAHGAFRIILQLDGEEIIDCVPEIGYHHRGAEKMAERQSWHSFIP 264
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ + Y L+VEKL GI++P R +IR++ +E RIL+HLL + T DV
Sbjct: 265 YTDRIDYLGGVMNNLPYVLSVEKLAGIKVPQRVDVIRIMMAEFFRILNHLLYLGTYIQDV 324
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+TP + F +R++ E +G R+H A++R GGV D+P + + + D P
Sbjct: 325 GAMTPVFFTFTDRQRAYKVVEAITGFRLHPAWYRIGGVAHDLPRGWDKLVREFLDWMPKR 384
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L++ N I + R + + ++A WG +G +R +G +DLRK++PY Y
Sbjct: 385 LDEYETAALKNSILRGRTIGVAQYNTKEALEWGTTGAGLRATGCDFDLRKARPYSGYENF 444
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+F++P+ +GD YDR +V+M EMR+S++II QC+ + GP A P PP +
Sbjct: 445 EFEVPLAHNGDAYDRCMVKMGEMRQSLRIIEQCLKNM----PEGPYKADHPLTTPPPKER 500
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ +E+LI HF + G +P E + +EA KG YL SDG YR +IR P +A
Sbjct: 501 TLQHIETLITHFLQVSWGPVMPANEAFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSFA 560
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ + + G +AD+ A LGS+D V +VDR
Sbjct: 561 HLQQIPSVINGSMIADLIAYLGSIDFVMADVDR 593
>gi|302130469|ref|ZP_07256459.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas syringae pv. tomato NCPPB 1108]
Length = 395
Score = 372 bits (956), Expect = e-101, Method: Composition-based stats.
Identities = 152/393 (38%), Positives = 227/393 (57%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +P
Sbjct: 7 QNEDYMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMAERQSWHSFIP 66
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ + Y L+VEKL GI++P + +IR++ +E RI SHLL + T DV
Sbjct: 67 YTDRIDYLGGVMNNLPYVLSVEKLAGIKVPEKVDVIRIMMAEFFRITSHLLFLGTYIQDV 126
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+TP + F +R+K E +G R+H A++R GGV D+P + + + D P
Sbjct: 127 GAMTPVFFTFTDRQKAYTVIEAITGFRLHPAWYRIGGVAHDLPRGWEKLVKDFVDWLPKR 186
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L++ + N I K R V + ++A WG +G +R +G +DLRK++PY Y
Sbjct: 187 LDEYTKAALQNSILKGRTVGVAAYNTKEALEWGVTGAGLRSTGCDFDLRKARPYSGYENF 246
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+F++P+ +GD YDR +VR+ EMR+S+KII QC+ + GP A P PP +
Sbjct: 247 EFEVPLAANGDAYDRCMVRVEEMRQSIKIIDQCMRNM----PEGPYKADHPLTTPPPKER 302
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ +E+LI HF + G +P E + +EA KG YL SDGG YR +IR P +
Sbjct: 303 TLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGGTMSYRTRIRTPSFP 362
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ + + +G +AD+ A LGS+D V +VDR
Sbjct: 363 HLQQIPSVIQGSMVADLIAYLGSIDFVMADVDR 395
>gi|157371543|ref|YP_001479532.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Serratia
proteamaculans 568]
gi|218534243|sp|A8GH14|NUOCD_SERP5 RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|157323307|gb|ABV42404.1| NADH dehydrogenase I, D subunit [Serratia proteamaculans 568]
Length = 598
Score = 372 bits (956), Expect = e-101, Method: Composition-based stats.
Identities = 150/395 (37%), Positives = 227/395 (57%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +
Sbjct: 208 TENEDFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 267
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI++P R IRV+ SE+ RI SHLL ++T D
Sbjct: 268 PYTDRIEYLGGCVNEMPYVLAVEKLAGIKVPDRVDTIRVMLSELFRINSHLLYISTFIQD 327
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + + P
Sbjct: 328 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLEWMPK 387
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R+V + + ++A WG +G +R +G +D+RK +PY Y
Sbjct: 388 RLDSYVKAALKNSILKGRSVGVASYNAKEALEWGVTGAGLRATGIEFDVRKWRPYSGYEN 447
Query: 243 LDFDIPIGK-HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF++P+G + DCY R ++++ E+R+S++I+ QC+N + GP A P PP +
Sbjct: 448 FDFEVPVGDGNSDCYTRVMLKVEELRQSLRILEQCLNNM----PEGPFKADHPLTTPPPK 503
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + +EA KG YL SDG YR ++R P
Sbjct: 504 ERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPS 563
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AHLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 564 FAHLQQIPAVIRGSLVSDLIVYLGSIDFVMSDVDR 598
>gi|33860732|ref|NP_892293.1| NAD(P)H-quinone oxidoreductase subunit H [Prochlorococcus marinus
subsp. pastoris str. CCMP1986]
gi|81576482|sp|Q7V3B0|NDHH_PROMP RecName: Full=NAD(P)H-quinone oxidoreductase subunit H; AltName:
Full=NAD(P)H dehydrogenase subunit H; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H;
AltName: Full=NDH-1 subunit H; Short=NDH-H
gi|33633674|emb|CAE18631.1| putative NADH dehydrogenase subunit [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 395
Score = 372 bits (956), Expect = e-101, Method: Composition-based stats.
Identities = 160/395 (40%), Positives = 229/395 (57%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +NFGP HP+ HGVLRL++ LDGE V +P IG LHRG EK+ E +T + V
Sbjct: 5 ETRTEPMVVNFGPHHPSMHGVLRLVVTLDGENVIDCEPVIGYLHRGMEKIAENRTNVMYV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R+DY A M E A E+L I +P R IRVL E+ RI +HLL + D
Sbjct: 65 PYVSRMDYAAGMFYEAIVVNAPERLANIVVPKRASYIRVLMLELNRIANHLLWLGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSR-MHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E A+G R ++ +FR GGV D+P +E +CD F
Sbjct: 125 VGAQTPFFYIFREREMIYDLWEAATGQRLINNNFFRIGGVACDLPYGWLEKCIDFCDWFA 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IFK+R +GT++ + A W SG M+R SG +WDLRK YECY
Sbjct: 185 PKIDEYEKLITNNPIFKKRIEGLGTIERDQAINWSLSGPMLRASGVSWDLRKVDSYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ +++I K GDCY RY VR+ EMR+S+KIIRQ + G GP + K + +
Sbjct: 245 DFEWEIASEKEGDCYARYRVRVQEMRQSLKIIRQACEMIPG----GPTENLEAKRMATED 300
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ + K + +P GE+Y +E+ KGE GV++ + P+R KIRA
Sbjct: 301 KKSEIFGMDYQYVAKKVAPTFKIPNGELYTRLESGKGEIGVFIQGNNEVTPWRFKIRAAD 360
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + + KG ++AD+ AILGS+D++ G VDR
Sbjct: 361 LNNLQILPHILKGAKIADIMAILGSIDVIMGSVDR 395
>gi|332088416|gb|EGI93534.1| NADH-quinone oxidoreductase subunit C/D [Shigella boydii 5216-82]
Length = 600
Score = 372 bits (956), Expect = e-101, Method: Composition-based stats.
Identities = 152/395 (38%), Positives = 223/395 (56%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP+AHG R++L+LDGE + P IG HRG EK+ E +++ +
Sbjct: 210 TENEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 269
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 270 PYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQD 329
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 330 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLCEFLDWMPK 389
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L N I K R+ + ++A WG +G +R +G +D+RK++PY Y
Sbjct: 390 RLASYEKAALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYEN 449
Query: 243 LDFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF+IP+ G DCY R ++++ E+R+S++I+ QC+N + GP A P PP +
Sbjct: 450 FDFEIPVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNM----PEGPFKADHPLTTPPPK 505
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + +EA KG YL SDG YR +IR P
Sbjct: 506 ERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPS 565
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YAHLQ + +G ++D+ LGS+D V +VDR
Sbjct: 566 YAHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR 600
>gi|315605127|ref|ZP_07880178.1| NADH-quinone oxidoreductase subunit D [Actinomyces sp. oral taxon
180 str. F0310]
gi|315313163|gb|EFU61229.1| NADH-quinone oxidoreductase subunit D [Actinomyces sp. oral taxon
180 str. F0310]
Length = 448
Score = 372 bits (956), Expect = e-101, Method: Composition-based stats.
Identities = 178/414 (42%), Positives = 238/414 (57%), Gaps = 19/414 (4%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
++ S +N GP HP+ HGVLRLILELDGE V G LH G EK +E +T+ Q
Sbjct: 36 IEAITSERIVVNLGPVHPSTHGVLRLILELDGEKVRETRVDTGYLHTGIEKNMEYRTWTQ 95
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTT 118
V Y R+DYVAP QE AY L VEKLLGI ++P R LIRVL E+ RI SHL+ + +
Sbjct: 96 GVAYCTRMDYVAPFFQEAAYCLGVEKLLGITEDVPERASLIRVLMMELCRIASHLVAIGS 155
Query: 119 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
++GA T GF RE+++ +ER SG RM+ Y RPGGV QDI + I
Sbjct: 156 TGNEMGATTIMTIGFRAREEILRVFERISGLRMNHEYIRPGGVVQDIGEGTTDYIRDRLR 215
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
+ ++ D+L N IFK+R ++ + L G +G +R +G DLRKSQPY
Sbjct: 216 RARKDIGELQDILQENPIFKKRLCDVAVMPLSALMALGTTGPGVRAAGLPLDLRKSQPYC 275
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
Y +FD+P D Y+R +VR E ES++I+ Q + +L + + P +DP+I
Sbjct: 276 GYENFEFDVPTRDKSDVYNRTMVRFDECYESMRIVWQVLAKL-DECEGAPTMVADPEIAW 334
Query: 299 PK----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGV 342
P R M SMESLIHHFKL TEG+HVP G+VY VE KG GV
Sbjct: 335 PARLAVATDGQGTSADHVREIMGESMESLIHHFKLVTEGFHVPAGQVYQTVEHAKGILGV 394
Query: 343 YLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L+SDGG +P+R R P +A+LQ++ + +G QLADV L ++D V G VDR
Sbjct: 395 HLVSDGGTRPFRAHFRDPSFANLQSLAMMTEGGQLADVVVSLAAIDPVLGGVDR 448
>gi|227497897|ref|ZP_03928077.1| NADH dehydrogenase (quinone) [Actinomyces urogenitalis DSM 15434]
gi|226832689|gb|EEH65072.1| NADH dehydrogenase (quinone) [Actinomyces urogenitalis DSM 15434]
Length = 464
Score = 372 bits (956), Expect = e-101, Method: Composition-based stats.
Identities = 165/418 (39%), Positives = 232/418 (55%), Gaps = 23/418 (5%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
D+ + +N GP HP+ HGVLRL+LE DGE V V G LH G EK +E +T+ Q
Sbjct: 47 DRLEHDRVVVNMGPVHPSTHGVLRLVLETDGEKVTEVRVGTGYLHTGIEKNMEYRTWTQG 106
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ R+DYVAP QE YALAVE+LLGI ++P + ++RV+ E+ RI SH++ + T
Sbjct: 107 ETFVTRMDYVAPFFQEVGYALAVEELLGITDDVPEKATVMRVILMELNRISSHVIAIGTG 166
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
++G T F RE ++ +E SG RM+ AY RPGG+ QD+P E +
Sbjct: 167 GNELGGTTLLTIAFRARENILRAFEMVSGLRMNHAYIRPGGLAQDVPEGFSEFVRSVMPD 226
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ + ++ +L N + K R + G + L G +G +R +G D+RK +PY
Sbjct: 227 IKNDIQELQAMLLANPLLKSRFIGTGEISLAAGLALGLTGPCLRAAGYPLDMRKIKPYCG 286
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRL-----LGKNKVGPVSASDP 294
Y DFD+P+ DCY+R LVR E +S+KII Q ++RL G + +DP
Sbjct: 287 YETYDFDVPVYDRSDCYNRQLVRFDECFQSLKIISQALDRLDEISARGDDPSNTTMVADP 346
Query: 295 KIVPPK----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
I P R M SMESLIHHFKL T+G+HVP G+VY VE KG
Sbjct: 347 TIAWPARMAIATDGQGQSLEHVREIMGTSMESLIHHFKLVTQGFHVPAGQVYTTVEHAKG 406
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GV+ +SDGG +PYR R P Y++LQ++ + +G +AD+ L S+D V G VDR
Sbjct: 407 VLGVHAVSDGGTRPYRVHFRDPSYSNLQSLAMMGEGGMIADLVPSLASIDPVLGGVDR 464
>gi|320529346|ref|ZP_08030434.1| putative NADH dehydrogenase, D subunit [Selenomonas artemidis
F0399]
gi|320138312|gb|EFW30206.1| putative NADH dehydrogenase, D subunit [Selenomonas artemidis
F0399]
Length = 365
Score = 372 bits (956), Expect = e-101, Method: Composition-based stats.
Identities = 159/391 (40%), Positives = 232/391 (59%), Gaps = 29/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ ++T+N GPQHP+ HGVL++ LELDGE + + P +G LHRG EKL+E +T++Q +PY
Sbjct: 3 RTETYTLNMGPQHPSTHGVLQVQLELDGERILKATPVMGYLHRGIEKLLEDRTYIQGLPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDYV+ MN YALAVE+L GIE R + IRV+ +E+ RI SHL+ + T A D+G
Sbjct: 63 TDRLDYVSSMNNNFGYALAVEELAGIETTRRAEYIRVIMAELNRINSHLIFIGTLANDLG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A T L+ F +REK++ + G+R Y R GGV +D+ PE I + D P L
Sbjct: 123 ASTGMLYCFRDREKILDIFNLVCGARQTFHYIRIGGVKEDLTPEAETMIRAFLDEVPIFL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
++ + LLTGN IF +R V + +E+A + +G +R +G +DLRK Y Y E +
Sbjct: 183 DEYNKLLTGNEIFVRRIVGTSPMTMEEALRYNMTGPNLRATGLPFDLRKVDGYSVYDEFE 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FD+P+G HGD +DRY V++ E+ +S +IIRQ + L + +G V PKIV
Sbjct: 243 FDVPVGAHGDNWDRYQVKLGEIAQSARIIRQAIEGLPEGDFMGKV----PKIV------- 291
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GEV++ E +GE G Y++SDG KPYR IR P + +
Sbjct: 292 ------------------KPPKGEVFSRTEGTRGELGFYIVSDGTPKPYRIHIRRPSFVN 333
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+Q ++ +C+G + D A S+D + GEVD
Sbjct: 334 MQGLDAMCRGMLIGDSVAAYSSIDPIMGEVD 364
>gi|330965589|gb|EGH65849.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas syringae pv. actinidiae str. M302091]
Length = 593
Score = 372 bits (956), Expect = e-101, Method: Composition-based stats.
Identities = 152/393 (38%), Positives = 227/393 (57%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +P
Sbjct: 205 QNEDYMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMAERQSWHSFIP 264
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ + Y L+VEKL GI++P + +IR++ +E RI SHLL + T DV
Sbjct: 265 YTDRIDYLGGVMNNLPYVLSVEKLAGIKVPEKVDVIRIMMTEFFRITSHLLFLGTYIQDV 324
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+TP + F +R+K E +G R+H A++R GGV D+P + + + D P
Sbjct: 325 GAMTPVFFTFTDRQKAYTVIEAITGFRLHPAWYRIGGVAHDLPRGWEKLVKDFVDWLPKR 384
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L++ + N I K R V + ++A WG +G +R +G +DLRK++PY Y
Sbjct: 385 LDEYTKAALQNSILKGRTVGVAAYNTKEALEWGVTGAGLRSTGCDFDLRKARPYSGYENF 444
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+F++P+ +GD YDR +VR+ EMR+S+KII QC+ + GP A P PP +
Sbjct: 445 EFEVPLAANGDAYDRCMVRVEEMRQSIKIIDQCMRNM----PEGPYKADHPLTTPPPKER 500
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ +E+LI HF + G +P E + +EA KG YL SDGG YR +IR P +
Sbjct: 501 TLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGGTMSYRTRIRTPSFP 560
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ + + +G +AD+ A LGS+D V +VDR
Sbjct: 561 HLQQIPSVIQGSMVADLIAYLGSIDFVMADVDR 593
>gi|320178741|gb|EFW53704.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Shigella
boydii ATCC 9905]
Length = 600
Score = 372 bits (956), Expect = e-101, Method: Composition-based stats.
Identities = 152/395 (38%), Positives = 223/395 (56%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP+AHG R++L+LDGE + P IG HRG EK+ E +++ +
Sbjct: 210 TENEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 269
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 270 PYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQD 329
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 330 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPK 389
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L N I K R+ + ++A WG +G +R +G +D+RK++PY Y
Sbjct: 390 RLASYEKAALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYEN 449
Query: 243 LDFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF+IP+ G DCY R ++++ E+R+S++I+ QC+N + GP A P PP +
Sbjct: 450 FDFEIPVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNM----PEGPFKADHPLTTPPPK 505
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + +EA KG YL SDG YR +IR P
Sbjct: 506 ERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPS 565
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YAHLQ + +G ++D+ LGS+D V +VDR
Sbjct: 566 YAHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR 600
>gi|213417786|ref|ZP_03350898.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Typhi str. E01-6750]
Length = 577
Score = 372 bits (956), Expect = e-101, Method: Composition-based stats.
Identities = 149/395 (37%), Positives = 223/395 (56%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +
Sbjct: 187 TDNEDFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 246
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 247 PYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQD 306
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + + P
Sbjct: 307 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLEWMPK 366
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R+ + ++A WG +G +R +G +D+RK +PY Y
Sbjct: 367 RLDSYEKAALRNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKWRPYSGYEN 426
Query: 243 LDFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF++P+ G DCY R ++++ E+R+S++I++QC++ + GP A P PP +
Sbjct: 427 FDFEVPVGGGVSDCYTRVMLKVEELRQSLRILQQCLDNM----PEGPFKADHPLTTPPPK 482
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + VEA KG YL SDG YR ++R P
Sbjct: 483 ERTLQHIETLITHFLQVSWGPVMPAQESFQMVEATKGINSYYLTSDGSTMSYRTRVRTPS 542
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AHLQ + +G ++D+ LGS+D V +VDR
Sbjct: 543 FAHLQQIPSAIRGSLVSDLIVYLGSIDFVMSDVDR 577
>gi|219682087|ref|YP_002468471.1| NADH dehydrogenase I chain C/D [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|254767802|sp|B8D761|NUOCD_BUCAT RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|219621820|gb|ACL29976.1| NADH dehydrogenase I chain C/D [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|311085898|gb|ADP65980.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Buchnera
aphidicola str. LL01 (Acyrthosiphon pisum)]
gi|311087052|gb|ADP67132.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Buchnera
aphidicola str. JF99 (Acyrthosiphon pisum)]
gi|311087611|gb|ADP67690.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Buchnera
aphidicola str. JF98 (Acyrthosiphon pisum)]
Length = 600
Score = 372 bits (956), Expect = e-101, Method: Composition-based stats.
Identities = 143/391 (36%), Positives = 222/391 (56%), Gaps = 5/391 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GP HP+AHG R++L+LDGE + P IG HRG EK+ E +++ +PY D
Sbjct: 214 EFMFLNLGPNHPSAHGAFRIVLQLDGENIVDCVPDIGYHHRGAEKMAERQSWHSYIPYTD 273
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R++Y+ E Y LAVEKL I +P + ++IRV+ SE+ RI SHLL ++T DVG +
Sbjct: 274 RIEYLGGCVNELPYVLAVEKLANISVPEKAEVIRVMMSELFRINSHLLYISTFIQDVGCM 333
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP + F +R+K+ E +G+RMH A+FR GGV D+P + + D P L
Sbjct: 334 TPVFFAFTDRQKIYDLIEAITGARMHPAWFRIGGVANDLPQGWNILLKEFLDWMPKRLKY 393
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ N I R+ I ++A WG +G +R +G +D+RK +PY Y F+
Sbjct: 394 YINTALKNSILIHRSKGIAEYNKKEALQWGVTGAGLRATGLNFDVRKWRPYSGYQNYTFE 453
Query: 247 IPIGK-HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+P+G DCY R ++++ E+ +S+ I++QC+ + GP + D PP + +
Sbjct: 454 VPVGSGISDCYSRVMIKVEEIYQSLFILKQCLCNM----PSGPFKSEDSLTTPPSKECVL 509
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
+++E++I HF + G +P E + +EA KG YLISDGG YR +IR P + HL
Sbjct: 510 QNIETMITHFLQVSWGPVIPENESFQMIEATKGINSYYLISDGGTMSYRTRIRTPSFPHL 569
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Q + + +G ++D+ LGS+D V +VDR
Sbjct: 570 QQIPSVIRGSLISDLIVYLGSIDFVMSDVDR 600
>gi|212640515|ref|YP_002317035.1| NADH dehydrogenase subunit D [Anoxybacillus flavithermus WK1]
gi|212561995|gb|ACJ35050.1| NADH dehydrogenase subunit D [Anoxybacillus flavithermus WK1]
Length = 366
Score = 372 bits (955), Expect = e-101, Method: Composition-based stats.
Identities = 152/391 (38%), Positives = 223/391 (57%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RL+L++DGEI++ P IG LHRGTEK+ E + Q +PY
Sbjct: 3 RTEEMLLNVGPQHPSTHGVFRLVLKIDGEIIKEATPVIGYLHRGTEKIAENLQYTQIIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY++ M + AVE ++GIE+P R + +RVL E+GRI SHL+ T +D+G
Sbjct: 63 TDRMDYLSAMTNNYVICHAVETMMGIEVPERAEYLRVLAMELGRIASHLVWWGTYLLDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++P L+ F ERE ++ SG+R+ Y R GGV D P ++ + + L
Sbjct: 123 AVSPFLYAFREREMIINLLNELSGARLTFNYMRVGGVKWDAPDGWIDKVKQFVPYMRKQL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+L+TGN IF+ R + +G E+A + SGV +R +G WDLRK +PY Y D
Sbjct: 183 EGYHELVTGNEIFRNRVIGVGKYTKEEALAYSLSGVNLRCTGVKWDLRKDEPYSIYDRFD 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FD+P+ GDC+ RY R+ E+ +S++II Q + G + A PK++
Sbjct: 243 FDVPVRTEGDCFARYECRLAEIEQSLRIIEQACEQFPSD---GEIMAKVPKMI------- 292
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE Y +E+P+GE G Y+ SDG +PYR K R P + +
Sbjct: 293 ------------------KAPPGEAYVRIESPRGEIGCYIASDGKKEPYRLKFRRPSFYN 334
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L KG +A++ AILG++DIV GEVD
Sbjct: 335 LQILPKLLKGENIANLIAILGAIDIVLGEVD 365
>gi|333001430|gb|EGK20998.1| NADH-quinone oxidoreductase subunit C/D [Shigella flexneri VA-6]
Length = 600
Score = 372 bits (955), Expect = e-101, Method: Composition-based stats.
Identities = 152/395 (38%), Positives = 222/395 (56%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP+AHG R++L+LDGE + P IG HRG EK+ E +++ +
Sbjct: 210 TENEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 269
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 270 PYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQD 329
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 330 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPK 389
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L N I K R + ++A WG +G +R +G +D+RK++PY Y
Sbjct: 390 RLASYEKAALQNTILKGRTQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYEN 449
Query: 243 LDFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF+IP+ G DCY R ++++ E+R+S++I+ QC+N + GP A P PP +
Sbjct: 450 FDFEIPVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNM----PEGPFKADHPLTTPPPK 505
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + +EA KG YL SDG YR +IR P
Sbjct: 506 ERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPS 565
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YAHLQ + +G ++D+ LGS+D V +VDR
Sbjct: 566 YAHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR 600
>gi|123967727|ref|YP_001008585.1| NAD(P)H-quinone oxidoreductase subunit H [Prochlorococcus marinus
str. AS9601]
gi|229891153|sp|A2BNW7|NDHH_PROMS RecName: Full=NAD(P)H-quinone oxidoreductase subunit H; AltName:
Full=NAD(P)H dehydrogenase subunit H; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H;
AltName: Full=NDH-1 subunit H; Short=NDH-H
gi|123197837|gb|ABM69478.1| putative NADH dehydrogenase subunit [Prochlorococcus marinus str.
AS9601]
Length = 395
Score = 372 bits (955), Expect = e-101, Method: Composition-based stats.
Identities = 158/395 (40%), Positives = 227/395 (57%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +NFGP HP+ HGVLRL++ LDGE V +P IG LHRG EK+ E +T + V
Sbjct: 5 ETRTEPMVVNFGPHHPSMHGVLRLVVTLDGENVIDCEPVIGYLHRGMEKIAENRTNVMYV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R+DY A M E A E+L I +P R IRVL E+ RI +HLL + D
Sbjct: 65 PYVSRMDYAAGMFYEAIVVNAPERLANIPVPKRASYIRVLMLELNRIANHLLWLGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSR-MHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E A+G R ++ +FR GGV D+P +E +CD F
Sbjct: 125 VGAQTPFFYIFREREMIYDLWEAATGQRLINNNFFRIGGVACDLPYGWLEKCIDFCDWFG 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IFK+R +GT++ + A W SG M+R SG +WDLRK YECY
Sbjct: 185 PKIDEYEKLITNNPIFKKRIEGLGTIQRDQAINWSLSGPMLRASGVSWDLRKVDSYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+ I K GDCY RY VR+ EMR+S+ IIRQ + G + + K+
Sbjct: 245 DFDWQIASEKEGDCYARYRVRVEEMRQSLSIIRQACKMIPGGPTEN--LEAQRMVTEDKK 302
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+++ + K + +P GE+Y +E+ KGE GV++ + P+R KIRA
Sbjct: 303 SEIFG--IDYQYVAKKVAPTFKIPNGELYTRLESGKGEIGVFIQGNNEVTPWRFKIRAAD 360
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + + KG ++AD+ AILGS+D++ G VDR
Sbjct: 361 LNNLQILPHILKGAKIADIMAILGSIDVIMGSVDR 395
>gi|89109104|ref|AP_002884.1| NADH:ubiquinone oxidoreductase, chain C,D [Escherichia coli str.
K-12 substr. W3110]
gi|170081903|ref|YP_001731223.1| NADH:ubiquinone oxidoreductase, chain C,D [Escherichia coli str.
K-12 substr. DH10B]
gi|256022030|ref|ZP_05435895.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia sp. 4_1_40B]
gi|300948570|ref|ZP_07162663.1| NADH dehydrogenase, D subunit [Escherichia coli MS 116-1]
gi|300956454|ref|ZP_07168743.1| NADH dehydrogenase, D subunit [Escherichia coli MS 175-1]
gi|301026956|ref|ZP_07190349.1| NADH dehydrogenase, D subunit [Escherichia coli MS 196-1]
gi|301647617|ref|ZP_07247413.1| NADH dehydrogenase, D subunit [Escherichia coli MS 146-1]
gi|307138950|ref|ZP_07498306.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli H736]
gi|312973455|ref|ZP_07787627.1| NADH-quinone oxidoreductase subunit C/D [Escherichia coli 1827-70]
gi|331642924|ref|ZP_08344059.1| NADH-quinone oxidoreductase subunit C/D (NADHdehydrogenase I
subunit C/D) (NDH-1 subunit C/D) (NUO3/NUO4)
[Escherichia coli H736]
gi|218528039|sp|B1X8Z8|NUOCD_ECODH RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|85675344|dbj|BAA16115.2| NADH:ubiquinone oxidoreductase, chain C,D [Escherichia coli str.
K12 substr. W3110]
gi|169889738|gb|ACB03445.1| NADH:ubiquinone oxidoreductase, chain C,D [Escherichia coli str.
K-12 substr. DH10B]
gi|260448621|gb|ACX39043.1| NADH dehydrogenase I, D subunit [Escherichia coli DH1]
gi|299879503|gb|EFI87714.1| NADH dehydrogenase, D subunit [Escherichia coli MS 196-1]
gi|300316724|gb|EFJ66508.1| NADH dehydrogenase, D subunit [Escherichia coli MS 175-1]
gi|300451918|gb|EFK15538.1| NADH dehydrogenase, D subunit [Escherichia coli MS 116-1]
gi|301074244|gb|EFK89050.1| NADH dehydrogenase, D subunit [Escherichia coli MS 146-1]
gi|309702598|emb|CBJ01926.1| NADH-quinone oxidoreductase subunit C/D [Escherichia coli ETEC
H10407]
gi|310332050|gb|EFP99285.1| NADH-quinone oxidoreductase subunit C/D [Escherichia coli 1827-70]
gi|315136920|dbj|BAJ44079.1| NADH:ubiquinone oxidoreductase, chain C, D [Escherichia coli DH1]
gi|315615555|gb|EFU96187.1| NADH-quinone oxidoreductase subunit C/D [Escherichia coli 3431]
gi|323936576|gb|EGB32863.1| NADH dehydrogenase [Escherichia coli E1520]
gi|323941017|gb|EGB37204.1| NADH dehydrogenase [Escherichia coli E482]
gi|331039722|gb|EGI11942.1| NADH-quinone oxidoreductase subunit C/D (NADHdehydrogenase I
subunit C/D) (NDH-1 subunit C/D) (NUO3/NUO4)
[Escherichia coli H736]
gi|332344067|gb|AEE57401.1| NADH oxidoreductase NuoD [Escherichia coli UMNK88]
Length = 600
Score = 372 bits (955), Expect = e-101, Method: Composition-based stats.
Identities = 150/395 (37%), Positives = 223/395 (56%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP+AHG R++L+LDGE + P IG HRG EK+ E +++ +
Sbjct: 210 TENEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 269
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 270 PYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQD 329
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 330 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPK 389
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L N I K R+ + ++A WG +G +R +G +D+RK++PY Y
Sbjct: 390 RLASYEKAALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYEN 449
Query: 243 LDFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF+IP+ G DCY R ++++ E+R+S++I+ QC+N + GP A P PP +
Sbjct: 450 FDFEIPVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNM----PEGPFKADHPLTTPPPK 505
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + +EA KG YL SDG YR ++R P
Sbjct: 506 ERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPS 565
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AHLQ + +G ++D+ LGS+D V +VDR
Sbjct: 566 FAHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR 600
>gi|270262812|ref|ZP_06191083.1| NADH-quinone oxidoreductase subunit C/D [Serratia odorifera 4Rx13]
gi|270043496|gb|EFA16589.1| NADH-quinone oxidoreductase subunit C/D [Serratia odorifera 4Rx13]
Length = 598
Score = 372 bits (955), Expect = e-101, Method: Composition-based stats.
Identities = 151/395 (38%), Positives = 227/395 (57%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +
Sbjct: 208 TENEDFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 267
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI++P R IRV+ SE+ RI SHLL ++T D
Sbjct: 268 PYTDRIEYLGGCVNEMPYVLAVEKLAGIKVPDRVDTIRVMLSELFRINSHLLYISTFIQD 327
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + + P
Sbjct: 328 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLEWMPK 387
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R+V + + ++A WG +G +R +G +D+RK +PY Y
Sbjct: 388 RLDSYVKAALKNSILKGRSVGVASYNAKEALEWGVTGAGLRATGIEFDVRKWRPYSGYEN 447
Query: 243 LDFDIPIGK-HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF+IP+G + DCY R ++++ E+R+S++I+ QC+N + GP A P PP +
Sbjct: 448 FDFEIPVGDGNSDCYTRVMLKVEELRQSLRILEQCLNNM----PEGPFKADHPLTTPPPK 503
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + +EA KG YL SDG YR ++R P
Sbjct: 504 ERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPS 563
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AHLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 564 FAHLQQIPAVIRGSLVSDLIVYLGSIDFVMSDVDR 598
>gi|239828580|ref|YP_002951204.1| NADH dehydrogenase subunit D [Geobacillus sp. WCH70]
gi|239808873|gb|ACS25938.1| NADH dehydrogenase I, D subunit [Geobacillus sp. WCH70]
Length = 366
Score = 372 bits (955), Expect = e-101, Method: Composition-based stats.
Identities = 160/391 (40%), Positives = 223/391 (57%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RLIL++DGEI++ P IG LHRGTEKL E + Q +PY
Sbjct: 3 RTEEMILNVGPQHPSTHGVFRLILKIDGEIIQEAKPVIGYLHRGTEKLAENLQYTQIIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY++ M + AVE ++GIE+P R + +RVL E+GRI SHL+ T +D+G
Sbjct: 63 TDRMDYLSAMTNNYVICHAVETMMGIEVPERAEYLRVLAMELGRIASHLVWWGTYLLDLG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A +P L+ F ERE ++ SG+R+ Y R GGV D P +E + + L
Sbjct: 123 ATSPFLYAFREREMIINLLNELSGARLTFNYMRVGGVKWDAPDGWIEKVKQFVPYMREKL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
DL+TGN IF+ R + +G E+A + SGV +R +G WDLRK++PY Y D
Sbjct: 183 AGYHDLVTGNEIFRHRVIGVGKYTKEEAINYSLSGVNLRCTGVKWDLRKNEPYSIYDRFD 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDIP+ + GDC RY R+ E+ ES+KII Q + K G + P+I+
Sbjct: 243 FDIPVREEGDCLARYECRLAEIEESLKIIEQACEQFP---KSGEIMGKVPRII------- 292
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE + +E+P+GE G Y+ SDG +PYR K R P + +
Sbjct: 293 ------------------KAPPGETFVRIESPRGEIGCYIASDGKKEPYRIKFRRPSFYN 334
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L KG +A+V AILGS+DIV GEVD
Sbjct: 335 LQILPKLLKGENIANVIAILGSIDIVLGEVD 365
>gi|324112818|gb|EGC06794.1| NADH dehydrogenase [Escherichia fergusonii B253]
Length = 600
Score = 372 bits (955), Expect = e-101, Method: Composition-based stats.
Identities = 150/395 (37%), Positives = 223/395 (56%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP+AHG R++L+LDGE + P IG HRG EK+ E +++ +
Sbjct: 210 TENEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 269
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 270 PYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQD 329
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 330 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPK 389
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L N I K R+ + ++A WG +G +R +G +D+RK++PY Y
Sbjct: 390 RLASYEKAALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYEN 449
Query: 243 LDFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF+IP+ G DCY R ++++ E+R+S++I+ QC+N + GP A P PP +
Sbjct: 450 FDFEIPVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNM----PEGPFKADHPLTTPPPK 505
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + +EA KG YL SDG YR ++R P
Sbjct: 506 ERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPS 565
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AHLQ + +G ++D+ LGS+D V +VDR
Sbjct: 566 FAHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR 600
>gi|293410646|ref|ZP_06654222.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli B354]
gi|291471114|gb|EFF13598.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli B354]
Length = 600
Score = 372 bits (955), Expect = e-101, Method: Composition-based stats.
Identities = 152/395 (38%), Positives = 223/395 (56%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP+AHG R++L+LDGE + P IG HRG EK+ E +++ +
Sbjct: 210 TENEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 269
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 270 PYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQD 329
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 330 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPK 389
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L N I K R+ + ++A WG +G +R +G +D+RK++PY Y
Sbjct: 390 RLASYEKAALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYEN 449
Query: 243 LDFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF+IP+ G DCY R ++++ E+R+S++I+ QC+N + GP A P PP +
Sbjct: 450 FDFEIPVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNM----PEGPFKADHPLTTPPPK 505
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + +EA KG YL SDG YR +IR P
Sbjct: 506 ERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPS 565
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YAHLQ + +G ++D+ LGS+D V +VDR
Sbjct: 566 YAHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR 600
>gi|145698291|ref|NP_416789.2| NADH:ubiquinone oxidoreductase, fused CD subunit [Escherichia coli
str. K-12 substr. MG1655]
gi|238901461|ref|YP_002927257.1| NADH:ubiquinone oxidoreductase, chain C,D [Escherichia coli BW2952]
gi|205831468|sp|P33599|NUOCD_ECOLI RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D; AltName: Full=NUO3/NUO4
gi|145693162|gb|AAC75346.2| NADH:ubiquinone oxidoreductase, fused CD subunit [Escherichia coli
str. K-12 substr. MG1655]
gi|238861868|gb|ACR63866.1| NADH:ubiquinone oxidoreductase, chain C,D [Escherichia coli BW2952]
Length = 596
Score = 372 bits (955), Expect = e-101, Method: Composition-based stats.
Identities = 150/395 (37%), Positives = 223/395 (56%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP+AHG R++L+LDGE + P IG HRG EK+ E +++ +
Sbjct: 206 TENEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 265
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 266 PYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQD 325
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 326 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPK 385
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L N I K R+ + ++A WG +G +R +G +D+RK++PY Y
Sbjct: 386 RLASYEKAALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYEN 445
Query: 243 LDFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF+IP+ G DCY R ++++ E+R+S++I+ QC+N + GP A P PP +
Sbjct: 446 FDFEIPVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNM----PEGPFKADHPLTTPPPK 501
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + +EA KG YL SDG YR ++R P
Sbjct: 502 ERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPS 561
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AHLQ + +G ++D+ LGS+D V +VDR
Sbjct: 562 FAHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR 596
>gi|320183381|gb|EFW58233.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Shigella
flexneri CDC 796-83]
gi|323171968|gb|EFZ57612.1| NADH-quinone oxidoreductase subunit C/D [Escherichia coli LT-68]
Length = 600
Score = 372 bits (955), Expect = e-101, Method: Composition-based stats.
Identities = 152/395 (38%), Positives = 223/395 (56%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP+AHG R++L+LDGE + P IG HRG EK+ E +++ +
Sbjct: 210 TENEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 269
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 270 PYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQD 329
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 330 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWERLLREFLDWMPK 389
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L N I K R+ + ++A WG +G +R +G +D+RK++PY Y
Sbjct: 390 RLASYEKAALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYEN 449
Query: 243 LDFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF+IP+ G DCY R ++++ E+R+S++I+ QC+N + GP A P PP +
Sbjct: 450 FDFEIPVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNM----PEGPFKADHPLTTPPPK 505
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + +EA KG YL SDG YR +IR P
Sbjct: 506 ERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPS 565
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YAHLQ + +G ++D+ LGS+D V +VDR
Sbjct: 566 YAHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR 600
>gi|126666306|ref|ZP_01737285.1| NADH:ubiquinone oxidoreductase, chain C,D [Marinobacter sp. ELB17]
gi|126629107|gb|EAZ99725.1| NADH:ubiquinone oxidoreductase, chain C,D [Marinobacter sp. ELB17]
Length = 595
Score = 372 bits (955), Expect = e-101, Method: Composition-based stats.
Identities = 159/392 (40%), Positives = 224/392 (57%), Gaps = 4/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GP HP+AHG RL+L+LDGE V P IG HRG EK+ E +++ +PY
Sbjct: 208 ETDFMFLNLGPNHPSAHGAFRLVLQLDGEEVIDCVPDIGYHHRGAEKMAERQSWHSFIPY 267
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DYV + Y LAVEKL GI++ R + IRV+ +E+ RI SHLL + T D+G
Sbjct: 268 TDRIDYVGGVMNNLPYVLAVEKLAGIQVNGRIETIRVMMAELFRITSHLLFLGTYLQDLG 327
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++P + F +R+K E +G RMH A++R GGV QD+P + + D P+ L
Sbjct: 328 AMSPVFYTFTDRQKGYDVIEAITGFRMHPAWYRIGGVMQDLPKGWDRLMQGFVDWMPARL 387
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
N+ + N + R +I +A WG +G +R +G +DLRK +PY Y D
Sbjct: 388 NEYERAMMKNSLVWDRTKHIAAFDTANALAWGVTGPNLRATGCDFDLRKKRPYSGYENFD 447
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F+IP+ +GD +DR +R+ EMRESVKII+QC+N + G A P PP R M
Sbjct: 448 FEIPLAHNGDVFDRGQLRIDEMRESVKIIQQCINHMPA----GDYKADHPLTTPPPRERM 503
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
+E+LI HF + G +P E +EA KG YL SDGG YR +IR P + H
Sbjct: 504 LEHIETLITHFLQVSWGPVLPGNESLQMIEATKGINSYYLTSDGGTMSYRTRIRTPSFPH 563
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
LQ + L +G + D+ A LGS+D V +VDR
Sbjct: 564 LQQIPVLMRGGFVPDLIAHLGSIDFVMADVDR 595
>gi|21672439|ref|NP_660506.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Buchnera
aphidicola str. Sg (Schizaphis graminum)]
gi|25008853|sp|Q8K9Y5|NUOCD_BUCAP RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|21623051|gb|AAM67717.1| NADH dehydrogenase I chain C, chain D [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 597
Score = 372 bits (955), Expect = e-101, Method: Composition-based stats.
Identities = 144/391 (36%), Positives = 221/391 (56%), Gaps = 5/391 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GP HP+AHG R++L+LDGE + P IG HRG EK+ E +++ +PY D
Sbjct: 211 DFMFLNLGPNHPSAHGAFRIVLQLDGENIVDCVPDIGYHHRGAEKMAERQSWHSYIPYTD 270
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R++Y+ E Y LAVEKL I +P + ++IRV+ SE+ RI SHLL ++T DVG +
Sbjct: 271 RIEYLGGCVNEMPYVLAVEKLANISVPEKVEVIRVMLSELFRINSHLLYISTFIQDVGCM 330
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP F +R+K+ E +G+RMH A+FR GGV D+P + + + P L
Sbjct: 331 TPVFLAFTDRQKIYDLIEAITGARMHPAWFRIGGVAHDLPKGWNVLLKEFLEWMPKRLKY 390
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
L N I +R+ I ++A WG +G +R +G D+RK +PY Y F+
Sbjct: 391 YVQLALENPILIRRSKGIAQYNQKEALQWGVTGSGLRSTGLDLDVRKWRPYSGYQNYTFE 450
Query: 247 IPIGK-HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
IPIG+ DCY R ++++ E+ +S+ I++QC+ + GP + P PP + +
Sbjct: 451 IPIGQGISDCYSRVIIKVEEIYQSLSILKQCLKNM----PEGPFKSDHPLTTPPPKERVL 506
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
+ ++++I HF + G +P E + +EA KG YLISDGG YR +IR P + HL
Sbjct: 507 KDIDTMITHFLQVSWGPVIPANESFQMIEATKGINSYYLISDGGTMSYRTRIRTPSFPHL 566
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Q + + +G ++D+ LGS+D V +VDR
Sbjct: 567 QQIPSVIRGSLISDLIVYLGSIDFVMSDVDR 597
>gi|298243461|ref|ZP_06967268.1| NADH dehydrogenase (quinone) [Ktedonobacter racemifer DSM 44963]
gi|297556515|gb|EFH90379.1| NADH dehydrogenase (quinone) [Ktedonobacter racemifer DSM 44963]
Length = 383
Score = 372 bits (955), Expect = e-101, Method: Composition-based stats.
Identities = 163/394 (41%), Positives = 234/394 (59%), Gaps = 29/394 (7%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ KS+ +N GPQHP+ HGVLRL+L L+GE V P IG LHRG EK++E + + +
Sbjct: 19 ELKSQEMLLNLGPQHPSTHGVLRLLLTLEGETVVDCTPVIGYLHRGIEKILENRPIMGGI 78
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
Y D DY++PM E AYA AVE+L+GIE+P R Q IR++ +E+ RI SHL+ V T +D
Sbjct: 79 RYMDNADYLSPMLNETAYAGAVEQLMGIELPRRAQYIRLITNELQRIASHLVAVGTYLLD 138
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA TP +W +RE ++ +E GSR + Y R GGV D+P +++ + D F
Sbjct: 139 LGATTPVMWALRDRETILSLFEALGGSRFNVNYMRVGGVLHDLPKGWLKECEEFLDQFVK 198
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+++ L+TGN IF+ R +G + + A +G +G M+R SG WDLR ++PY Y E
Sbjct: 199 NHAELTALITGNEIFEARTQGVGYIDPQQALAYGLTGPMLRASGINWDLRVNRPYMAYRE 258
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+ + + + GDCY RY VRM EM ESV++ R+ +++L G GP+S P +
Sbjct: 259 IAVNPQVRQEGDCYARYSVRMAEMLESVRLCREGIDKLPG----GPISTRTPIAL----- 309
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
P GE Y A+E+ KGE GVY ISDG P+R K+R P +
Sbjct: 310 --------------------RPPRGETYFAIESSKGELGVYFISDGSEYPWRAKLRGPSF 349
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + L +GH+++D AI+GS DIV GEVDR
Sbjct: 350 VNLQIVPELLRGHKMSDTIAIMGSTDIVLGEVDR 383
>gi|284922274|emb|CBG35359.1| NADH-quinone oxidoreductase subunit C/D [Escherichia coli 042]
Length = 600
Score = 372 bits (955), Expect = e-101, Method: Composition-based stats.
Identities = 152/395 (38%), Positives = 223/395 (56%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP+AHG R++L+LDGE + P IG HRG EK+ E +++ +
Sbjct: 210 TENEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 269
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 270 PYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQD 329
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 330 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPK 389
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L N I K R+ + ++A WG +G +R +G +D+RK++PY Y
Sbjct: 390 RLASYEKAALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYEN 449
Query: 243 LDFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF+IP+ G DCY R ++++ E+R+S++I+ QC+N + GP A P PP +
Sbjct: 450 FDFEIPVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNM----PEGPFKADHPLTTPPPK 505
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + +EA KG YL SDG YR +IR P
Sbjct: 506 ERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPS 565
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YAHLQ + +G ++D+ LGS+D V +VDR
Sbjct: 566 YAHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR 600
>gi|330830047|ref|YP_004392999.1| NADH-quinone oxidoreductase subunit C/D [Aeromonas veronii B565]
gi|328805183|gb|AEB50382.1| NADH-quinone oxidoreductase subunit C/D [Aeromonas veronii B565]
Length = 601
Score = 372 bits (955), Expect = e-101, Method: Composition-based stats.
Identities = 153/394 (38%), Positives = 223/394 (56%), Gaps = 5/394 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+AHG RL+L+LDGE + P IG HRG EK+ E +++ +P
Sbjct: 212 ENEDYMFLNLGPNHPSAHGAFRLVLQLDGEEIRNCVPDIGYHHRGAEKMGERQSWHSYIP 271
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR++Y+ + Y LAVEKL GI++P R +IRV+ +E+ RI SHLL + T DV
Sbjct: 272 YTDRVEYLGGVMNNLPYVLAVEKLAGIKVPQRVDMIRVMMAELFRIQSHLLFLGTYIQDV 331
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCW-CDSFPS 182
GA+TP + F +R+K+ E +G+RMH A+FR GGV D+P + P
Sbjct: 332 GAMTPVFFTFTDRQKIYTIIEAITGARMHPAWFRIGGVAHDLPKGWQRLVQDNLLSWLPK 391
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L D N I + R + + E A WG +G +R +G +D+RK +PY Y +
Sbjct: 392 RLMDYEKAAMRNSILRGRTIGVSAYTTEQALSWGTTGAGLRATGLNFDVRKWRPYSGYDQ 451
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF++P+G +GD YDR VR+ E+R+S+ II QC+ + GP A P PP +
Sbjct: 452 FDFEVPVGSNGDAYDRATVRIEEIRQSMSIIEQCMKNM----PEGPFKADHPLTTPPPKE 507
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ +E+LI+HF + G +P E + +EA KG YL SDG YR +IR P +
Sbjct: 508 RTLQHIETLINHFLQVSWGPVMPAAESFQMIEATKGVNSYYLTSDGSTMSYRTRIRTPSF 567
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AHLQ + + KG ++D+ LGS+D V +VDR
Sbjct: 568 AHLQQIPSVIKGSMVSDLIVYLGSIDFVMSDVDR 601
>gi|152971214|ref|YP_001336323.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Klebsiella
pneumoniae subsp. pneumoniae MGH 78578]
gi|238895803|ref|YP_002920539.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Klebsiella
pneumoniae NTUH-K2044]
gi|262043326|ref|ZP_06016455.1| NADH-quinone oxidoreductase [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|330003558|ref|ZP_08304673.1| NADH dehydrogenase subunit D [Klebsiella sp. MS 92-3]
gi|218528050|sp|A6TBX2|NUOCD_KLEP7 RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|150956063|gb|ABR78093.1| NADH dehydrogenase I chain C, D [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|238548121|dbj|BAH64472.1| NADH dehydrogenase I chain CD [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|259039350|gb|EEW40492.1| NADH-quinone oxidoreductase [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|328536898|gb|EGF63197.1| NADH dehydrogenase subunit D [Klebsiella sp. MS 92-3]
Length = 602
Score = 372 bits (955), Expect = e-101, Method: Composition-based stats.
Identities = 149/395 (37%), Positives = 223/395 (56%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +
Sbjct: 212 TDNEDFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 271
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 272 PYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQD 331
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + + P
Sbjct: 332 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLEWMPK 391
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R+V + ++A WG +G +R +G +D+RK +PY Y
Sbjct: 392 RLDSYEKAALRNTILKGRSVGVAAYTAKEALEWGTTGAGLRATGIDFDVRKWRPYSGYEN 451
Query: 243 LDFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF++P G DCY R ++++ E+R+S++I++QC++ + GP A P PP +
Sbjct: 452 FDFEVPTGGGVSDCYTRVMLKVEELRQSLRILQQCLDNM----PEGPFKADHPLTTPPPK 507
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + +EA KG YL SDG YR ++R P
Sbjct: 508 ERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPS 567
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AHLQ + +G ++D+ LGS+D V +VDR
Sbjct: 568 FAHLQQIPSAIRGSLVSDLIVYLGSIDFVMSDVDR 602
>gi|213970033|ref|ZP_03398165.1| NADH dehydrogenase I, C/D subunit [Pseudomonas syringae pv. tomato
T1]
gi|301381388|ref|ZP_07229806.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas syringae pv. tomato Max13]
gi|302062159|ref|ZP_07253700.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas syringae pv. tomato K40]
gi|213925137|gb|EEB58700.1| NADH dehydrogenase I, C/D subunit [Pseudomonas syringae pv. tomato
T1]
Length = 593
Score = 372 bits (955), Expect = e-101, Method: Composition-based stats.
Identities = 152/393 (38%), Positives = 227/393 (57%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +P
Sbjct: 205 QNEDYMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMAERQSWHSFIP 264
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ + Y L+VEKL GI++P + +IR++ +E RI SHLL + T DV
Sbjct: 265 YTDRIDYLGGVMNNLPYVLSVEKLAGIKVPEKVDVIRIMMAEFFRITSHLLFLGTYIQDV 324
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+TP + F +R+K E +G R+H A++R GGV D+P + + + D P
Sbjct: 325 GAMTPVFFTFTDRQKAYTVIEAITGFRLHPAWYRIGGVAHDLPRGWEKLVKDFVDWLPKR 384
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L++ + N I K R V + ++A WG +G +R +G +DLRK++PY Y
Sbjct: 385 LDEYTKAALQNSILKGRTVGVAAYNTKEALEWGVTGAGLRSTGCDFDLRKARPYSGYENF 444
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+F++P+ +GD YDR +VR+ EMR+S+KII QC+ + GP A P PP +
Sbjct: 445 EFEVPLAANGDAYDRCMVRVEEMRQSIKIIDQCMRNM----PEGPYKADHPLTTPPPKER 500
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ +E+LI HF + G +P E + +EA KG YL SDGG YR +IR P +
Sbjct: 501 TLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGGTMSYRTRIRTPSFP 560
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ + + +G +AD+ A LGS+D V +VDR
Sbjct: 561 HLQQIPSVIQGSMVADLIAYLGSIDFVMADVDR 593
>gi|28870531|ref|NP_793150.1| NADH dehydrogenase I, subunit C/D [Pseudomonas syringae pv. tomato
str. DC3000]
gi|81730554|sp|Q87ZQ7|NUOCD_PSESM RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|28853779|gb|AAO56845.1| NADH dehydrogenase I, C/D subunit [Pseudomonas syringae pv. tomato
str. DC3000]
gi|330875771|gb|EGH09920.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas syringae pv. morsprunorum str. M302280PT]
Length = 593
Score = 372 bits (955), Expect = e-101, Method: Composition-based stats.
Identities = 152/393 (38%), Positives = 227/393 (57%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +P
Sbjct: 205 QNEDYMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMAERQSWHSFIP 264
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ + Y L+VEKL GI++P + +IR++ +E RI SHLL + T DV
Sbjct: 265 YTDRIDYLGGVMNNLPYVLSVEKLAGIKVPEKVDVIRIMMAEFFRITSHLLFLGTYIQDV 324
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+TP + F +R+K E +G R+H A++R GGV D+P + + + D P
Sbjct: 325 GAMTPVFFTFTDRQKAYTVIEAITGFRLHPAWYRIGGVAHDLPRGWEKLVKDFVDWLPKR 384
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L++ + N I K R V + ++A WG +G +R +G +DLRK++PY Y
Sbjct: 385 LDEYTKAALQNSILKGRTVGVAAYNTKEALEWGVTGAGLRSTGCDFDLRKARPYSGYENF 444
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+F++P+ +GD YDR +VR+ EMR+S+KII QC+ + GP A P PP +
Sbjct: 445 EFEVPLAANGDAYDRCMVRVEEMRQSIKIIDQCMRNM----PEGPYKADHPLTTPPPKER 500
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ +E+LI HF + G +P E + +EA KG YL SDGG YR +IR P +
Sbjct: 501 TLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGGTMSYRTRIRTPSFP 560
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ + + +G +AD+ A LGS+D V +VDR
Sbjct: 561 HLQQIPSVIQGSMVADLIAYLGSIDFVMADVDR 593
>gi|24113658|ref|NP_708168.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Shigella
flexneri 2a str. 301]
gi|30063712|ref|NP_837883.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Shigella
flexneri 2a str. 2457T]
gi|74312804|ref|YP_311223.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Shigella
sonnei Ss046]
gi|82544764|ref|YP_408711.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Shigella
boydii Sb227]
gi|82777694|ref|YP_404043.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Shigella
dysenteriae Sd197]
gi|157158752|ref|YP_001463629.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli E24377A]
gi|157161774|ref|YP_001459092.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli HS]
gi|170019405|ref|YP_001724359.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli ATCC 8739]
gi|170682181|ref|YP_001744484.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli SMS-3-5]
gi|188495926|ref|ZP_03003196.1| NADH-quinone oxidoreductase, D subunit [Escherichia coli 53638]
gi|191166524|ref|ZP_03028354.1| NADH-quinone oxidoreductase, C/D subunit [Escherichia coli B7A]
gi|191170147|ref|ZP_03031701.1| NADH-quinone oxidoreductase, C/D subunit [Escherichia coli F11]
gi|193062410|ref|ZP_03043505.1| NADH-quinone oxidoreductase, C/D subunit [Escherichia coli E22]
gi|193068271|ref|ZP_03049235.1| NADH-quinone oxidoreductase, C/D subunit [Escherichia coli E110019]
gi|194427148|ref|ZP_03059699.1| NADH-quinone oxidoreductase, C/D subunit [Escherichia coli B171]
gi|194433330|ref|ZP_03065610.1| NADH-quinone oxidoreductase, C/D subunit [Shigella dysenteriae
1012]
gi|194436293|ref|ZP_03068395.1| NADH-quinone oxidoreductase, C/D subunit [Escherichia coli 101-1]
gi|209919734|ref|YP_002293818.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli SE11]
gi|218548265|ref|YP_002382056.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia fergusonii ATCC 35469]
gi|218554842|ref|YP_002387755.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli IAI1]
gi|218695885|ref|YP_002403552.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli 55989]
gi|218700760|ref|YP_002408389.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli IAI39]
gi|218705816|ref|YP_002413335.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli UMN026]
gi|253772792|ref|YP_003035623.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|254162295|ref|YP_003045403.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli B str. REL606]
gi|260844873|ref|YP_003222651.1| NADH:ubiquinone oxidoreductase, chain C, D [Escherichia coli
O103:H2 str. 12009]
gi|260856330|ref|YP_003230221.1| NADH:ubiquinone oxidoreductase, chain C, D [Escherichia coli
O26:H11 str. 11368]
gi|260869009|ref|YP_003235411.1| NADH:ubiquinone oxidoreductase, chain C, D [Escherichia coli
O111:H- str. 11128]
gi|293405752|ref|ZP_06649744.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli FVEC1412]
gi|293415579|ref|ZP_06658222.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli B185]
gi|293446623|ref|ZP_06663045.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli B088]
gi|298381435|ref|ZP_06991034.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli FVEC1302]
gi|300822157|ref|ZP_07102299.1| NADH dehydrogenase, D subunit [Escherichia coli MS 119-7]
gi|300896960|ref|ZP_07115441.1| NADH dehydrogenase, D subunit [Escherichia coli MS 198-1]
gi|300903671|ref|ZP_07121587.1| NADH dehydrogenase, D subunit [Escherichia coli MS 84-1]
gi|300918549|ref|ZP_07135139.1| NADH dehydrogenase, D subunit [Escherichia coli MS 115-1]
gi|300924545|ref|ZP_07140509.1| NADH dehydrogenase, D subunit [Escherichia coli MS 182-1]
gi|300931361|ref|ZP_07146692.1| NADH dehydrogenase, D subunit [Escherichia coli MS 187-1]
gi|300936851|ref|ZP_07151740.1| NADH dehydrogenase, D subunit [Escherichia coli MS 21-1]
gi|300981072|ref|ZP_07175344.1| NADH dehydrogenase, D subunit [Escherichia coli MS 200-1]
gi|301024084|ref|ZP_07187798.1| NADH dehydrogenase, D subunit [Escherichia coli MS 69-1]
gi|301303255|ref|ZP_07209380.1| NADH dehydrogenase, D subunit [Escherichia coli MS 124-1]
gi|301328778|ref|ZP_07221826.1| NADH dehydrogenase, D subunit [Escherichia coli MS 78-1]
gi|307311154|ref|ZP_07590798.1| NADH dehydrogenase I, D subunit [Escherichia coli W]
gi|309793165|ref|ZP_07687593.1| NADH dehydrogenase, D subunit [Escherichia coli MS 145-7]
gi|331653728|ref|ZP_08354729.1| NADH-quinone oxidoreductase subunit C/D (NADHdehydrogenase I
subunit C/D) (NDH-1 subunit C/D) (NUO3/NUO4)
[Escherichia coli M718]
gi|331658368|ref|ZP_08359330.1| NADH-quinone oxidoreductase subunit C/D (NADHdehydrogenase I
subunit C/D) (NDH-1 subunit C/D) (NUO3/NUO4)
[Escherichia coli TA206]
gi|331663801|ref|ZP_08364711.1| NADH-quinone oxidoreductase subunit C/D (NADHdehydrogenase I
subunit C/D) (NDH-1 subunit C/D) (NUO3/NUO4)
[Escherichia coli TA143]
gi|331668984|ref|ZP_08369832.1| NADH-quinone oxidoreductase subunit C/D (NADHdehydrogenase I
subunit C/D) (NDH-1 subunit C/D) (NUO3/NUO4)
[Escherichia coli TA271]
gi|331673789|ref|ZP_08374552.1| NADH-quinone oxidoreductase subunit C/D (NADHdehydrogenase I
subunit C/D) (NDH-1 subunit C/D) (NUO3/NUO4)
[Escherichia coli TA280]
gi|331678232|ref|ZP_08378907.1| NADH-quinone oxidoreductase subunit C/D (NADHdehydrogenase I
subunit C/D) (NDH-1 subunit C/D) (NUO3/NUO4)
[Escherichia coli H591]
gi|331683957|ref|ZP_08384553.1| NADH-quinone oxidoreductase subunit C/D (NADHdehydrogenase I
subunit C/D) (NDH-1 subunit C/D) (NUO3/NUO4)
[Escherichia coli H299]
gi|332278568|ref|ZP_08390981.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Shigella
sp. D9]
gi|81724329|sp|Q83QS6|NUOCD_SHIFL RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|123559143|sp|Q31YH5|NUOCD_SHIBS RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|123562060|sp|Q32DQ3|NUOCD_SHIDS RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|123616692|sp|Q3YZS4|NUOCD_SHISS RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|218528038|sp|A7ZPA0|NUOCD_ECO24 RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|218528040|sp|A8A2F5|NUOCD_ECOHS RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|218528042|sp|B1IXQ6|NUOCD_ECOLC RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|218528043|sp|B1LLN9|NUOCD_ECOSM RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|226737315|sp|B7NNW5|NUOCD_ECO7I RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|226737316|sp|B7M5W5|NUOCD_ECO8A RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|226737317|sp|B7N5P8|NUOCD_ECOLU RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|226737318|sp|B6I7N6|NUOCD_ECOSE RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|226737319|sp|B7LM46|NUOCD_ESCF3 RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|254767804|sp|B7LAU8|NUOCD_ECO55 RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|24052722|gb|AAN43875.1| NADH dehydrogenase I chain C, D [Shigella flexneri 2a str. 301]
gi|30041967|gb|AAP17693.1| NADH dehydrogenase I chain C, D [Shigella flexneri 2a str. 2457T]
gi|73856281|gb|AAZ88988.1| NADH dehydrogenase I chain C, D [Shigella sonnei Ss046]
gi|81241842|gb|ABB62552.1| NADH dehydrogenase I chain C, D [Shigella dysenteriae Sd197]
gi|81246175|gb|ABB66883.1| NADH dehydrogenase I chain C, D [Shigella boydii Sb227]
gi|157067454|gb|ABV06709.1| NADH-quinone oxidoreductase, C/D subunit [Escherichia coli HS]
gi|157080782|gb|ABV20490.1| NADH-quinone oxidoreductase, C/D subunit [Escherichia coli E24377A]
gi|169754333|gb|ACA77032.1| NADH dehydrogenase I, D subunit [Escherichia coli ATCC 8739]
gi|170519899|gb|ACB18077.1| NADH-quinone oxidoreductase, C/D subunit [Escherichia coli SMS-3-5]
gi|188491125|gb|EDU66228.1| NADH-quinone oxidoreductase, D subunit [Escherichia coli 53638]
gi|190903484|gb|EDV63203.1| NADH-quinone oxidoreductase, C/D subunit [Escherichia coli B7A]
gi|190909663|gb|EDV69248.1| NADH-quinone oxidoreductase, C/D subunit [Escherichia coli F11]
gi|192932076|gb|EDV84675.1| NADH-quinone oxidoreductase, C/D subunit [Escherichia coli E22]
gi|192958550|gb|EDV88989.1| NADH-quinone oxidoreductase, C/D subunit [Escherichia coli E110019]
gi|194414769|gb|EDX31040.1| NADH-quinone oxidoreductase, C/D subunit [Escherichia coli B171]
gi|194418424|gb|EDX34513.1| NADH-quinone oxidoreductase, C/D subunit [Shigella dysenteriae
1012]
gi|194425021|gb|EDX41006.1| NADH-quinone oxidoreductase, C/D subunit [Escherichia coli 101-1]
gi|209912993|dbj|BAG78067.1| NADH dehydrogenase I chain C/D [Escherichia coli SE11]
gi|218352617|emb|CAU98398.1| NADH:ubiquinone oxidoreductase, chain C,D [Escherichia coli 55989]
gi|218355806|emb|CAQ88419.1| NADH:ubiquinone oxidoreductase, chain C,D [Escherichia fergusonii
ATCC 35469]
gi|218361610|emb|CAQ99202.1| NADH:ubiquinone oxidoreductase, chain C,D [Escherichia coli IAI1]
gi|218370746|emb|CAR18559.1| NADH:ubiquinone oxidoreductase, chain C,D [Escherichia coli IAI39]
gi|218432913|emb|CAR13807.1| NADH:ubiquinone oxidoreductase, chain C,D [Escherichia coli UMN026]
gi|253323836|gb|ACT28438.1| NADH dehydrogenase I, D subunit [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253974196|gb|ACT39867.1| NADH:ubiquinone oxidoreductase, chain C,D [Escherichia coli B str.
REL606]
gi|253978363|gb|ACT44033.1| NADH:ubiquinone oxidoreductase, chain C,D [Escherichia coli
BL21(DE3)]
gi|257754979|dbj|BAI26481.1| NADH:ubiquinone oxidoreductase, chain C, D [Escherichia coli
O26:H11 str. 11368]
gi|257760020|dbj|BAI31517.1| NADH:ubiquinone oxidoreductase, chain C, D [Escherichia coli
O103:H2 str. 12009]
gi|257765365|dbj|BAI36860.1| NADH:ubiquinone oxidoreductase, chain C, D [Escherichia coli
O111:H- str. 11128]
gi|281601727|gb|ADA74711.1| NADH dehydrogenase I chain C, D [Shigella flexneri 2002017]
gi|291323453|gb|EFE62881.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli B088]
gi|291427960|gb|EFF00987.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli FVEC1412]
gi|291433227|gb|EFF06206.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli B185]
gi|298278877|gb|EFI20391.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli FVEC1302]
gi|300307685|gb|EFJ62205.1| NADH dehydrogenase, D subunit [Escherichia coli MS 200-1]
gi|300359228|gb|EFJ75098.1| NADH dehydrogenase, D subunit [Escherichia coli MS 198-1]
gi|300396740|gb|EFJ80278.1| NADH dehydrogenase, D subunit [Escherichia coli MS 69-1]
gi|300404327|gb|EFJ87865.1| NADH dehydrogenase, D subunit [Escherichia coli MS 84-1]
gi|300414284|gb|EFJ97594.1| NADH dehydrogenase, D subunit [Escherichia coli MS 115-1]
gi|300419263|gb|EFK02574.1| NADH dehydrogenase, D subunit [Escherichia coli MS 182-1]
gi|300458038|gb|EFK21531.1| NADH dehydrogenase, D subunit [Escherichia coli MS 21-1]
gi|300460823|gb|EFK24316.1| NADH dehydrogenase, D subunit [Escherichia coli MS 187-1]
gi|300525287|gb|EFK46356.1| NADH dehydrogenase, D subunit [Escherichia coli MS 119-7]
gi|300841429|gb|EFK69189.1| NADH dehydrogenase, D subunit [Escherichia coli MS 124-1]
gi|300844840|gb|EFK72600.1| NADH dehydrogenase, D subunit [Escherichia coli MS 78-1]
gi|306908660|gb|EFN39157.1| NADH dehydrogenase I, D subunit [Escherichia coli W]
gi|308123451|gb|EFO60713.1| NADH dehydrogenase, D subunit [Escherichia coli MS 145-7]
gi|315061578|gb|ADT75905.1| NADH:ubiquinone oxidoreductase, chain C,D [Escherichia coli W]
gi|315255220|gb|EFU35188.1| NADH dehydrogenase, D subunit [Escherichia coli MS 85-1]
gi|320177168|gb|EFW52180.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Shigella
dysenteriae CDC 74-1112]
gi|320199874|gb|EFW74463.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli EC4100B]
gi|323161620|gb|EFZ47505.1| NADH-quinone oxidoreductase subunit C/D [Escherichia coli E128010]
gi|323168544|gb|EFZ54224.1| NADH-quinone oxidoreductase subunit C/D [Shigella sonnei 53G]
gi|323176789|gb|EFZ62379.1| NADH-quinone oxidoreductase subunit C/D [Escherichia coli 1180]
gi|323377842|gb|ADX50110.1| NADH dehydrogenase I, D subunit [Escherichia coli KO11]
gi|323944799|gb|EGB40865.1| NADH dehydrogenase [Escherichia coli H120]
gi|323961469|gb|EGB57079.1| NADH dehydrogenase [Escherichia coli H489]
gi|323967727|gb|EGB63139.1| NADH dehydrogenase [Escherichia coli M863]
gi|323973009|gb|EGB68203.1| NADH dehydrogenase [Escherichia coli TA007]
gi|323977513|gb|EGB72599.1| NADH dehydrogenase [Escherichia coli TW10509]
gi|324006664|gb|EGB75883.1| NADH dehydrogenase, D subunit [Escherichia coli MS 57-2]
gi|324013174|gb|EGB82393.1| NADH dehydrogenase, D subunit [Escherichia coli MS 60-1]
gi|324020882|gb|EGB90101.1| NADH dehydrogenase, D subunit [Escherichia coli MS 117-3]
gi|324117836|gb|EGC11735.1| NADH dehydrogenase [Escherichia coli E1167]
gi|325496679|gb|EGC94538.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia fergusonii ECD227]
gi|327252556|gb|EGE64215.1| NADH-quinone oxidoreductase subunit C/D [Escherichia coli STEC_7v]
gi|331048577|gb|EGI20653.1| NADH-quinone oxidoreductase subunit C/D (NADHdehydrogenase I
subunit C/D) (NDH-1 subunit C/D) (NUO3/NUO4)
[Escherichia coli M718]
gi|331056616|gb|EGI28625.1| NADH-quinone oxidoreductase subunit C/D (NADHdehydrogenase I
subunit C/D) (NDH-1 subunit C/D) (NUO3/NUO4)
[Escherichia coli TA206]
gi|331059600|gb|EGI31577.1| NADH-quinone oxidoreductase subunit C/D (NADHdehydrogenase I
subunit C/D) (NDH-1 subunit C/D) (NUO3/NUO4)
[Escherichia coli TA143]
gi|331064178|gb|EGI36089.1| NADH-quinone oxidoreductase subunit C/D (NADHdehydrogenase I
subunit C/D) (NDH-1 subunit C/D) (NUO3/NUO4)
[Escherichia coli TA271]
gi|331069062|gb|EGI40454.1| NADH-quinone oxidoreductase subunit C/D (NADHdehydrogenase I
subunit C/D) (NDH-1 subunit C/D) (NUO3/NUO4)
[Escherichia coli TA280]
gi|331074692|gb|EGI46012.1| NADH-quinone oxidoreductase subunit C/D (NADHdehydrogenase I
subunit C/D) (NDH-1 subunit C/D) (NUO3/NUO4)
[Escherichia coli H591]
gi|331078909|gb|EGI50111.1| NADH-quinone oxidoreductase subunit C/D (NADHdehydrogenase I
subunit C/D) (NDH-1 subunit C/D) (NUO3/NUO4)
[Escherichia coli H299]
gi|332090616|gb|EGI95712.1| NADH-quinone oxidoreductase subunit C/D [Shigella dysenteriae
155-74]
gi|332100920|gb|EGJ04266.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Shigella
sp. D9]
gi|332754934|gb|EGJ85299.1| NADH-quinone oxidoreductase subunit C/D [Shigella flexneri 4343-70]
gi|332755335|gb|EGJ85699.1| NADH-quinone oxidoreductase subunit C/D [Shigella flexneri K-671]
gi|332756273|gb|EGJ86624.1| NADH-quinone oxidoreductase subunit C/D [Shigella flexneri 2747-71]
gi|333001838|gb|EGK21404.1| NADH-quinone oxidoreductase subunit C/D [Shigella flexneri K-218]
gi|333002653|gb|EGK22213.1| NADH-quinone oxidoreductase subunit C/D [Shigella flexneri K-272]
gi|333016308|gb|EGK35639.1| NADH-quinone oxidoreductase subunit C/D [Shigella flexneri K-304]
gi|333016537|gb|EGK35867.1| NADH-quinone oxidoreductase subunit C/D [Shigella flexneri K-227]
Length = 600
Score = 372 bits (955), Expect = e-101, Method: Composition-based stats.
Identities = 152/395 (38%), Positives = 223/395 (56%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP+AHG R++L+LDGE + P IG HRG EK+ E +++ +
Sbjct: 210 TENEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 269
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 270 PYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQD 329
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 330 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPK 389
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L N I K R+ + ++A WG +G +R +G +D+RK++PY Y
Sbjct: 390 RLASYEKAALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYEN 449
Query: 243 LDFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF+IP+ G DCY R ++++ E+R+S++I+ QC+N + GP A P PP +
Sbjct: 450 FDFEIPVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNM----PEGPFKADHPLTTPPPK 505
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + +EA KG YL SDG YR +IR P
Sbjct: 506 ERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPS 565
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YAHLQ + +G ++D+ LGS+D V +VDR
Sbjct: 566 YAHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR 600
>gi|187731573|ref|YP_001881107.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Shigella
boydii CDC 3083-94]
gi|218534334|sp|B2TW67|NUOCD_SHIB3 RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|187428565|gb|ACD07839.1| NADH-quinone oxidoreductase, C/D subunit [Shigella boydii CDC
3083-94]
Length = 600
Score = 372 bits (955), Expect = e-101, Method: Composition-based stats.
Identities = 152/395 (38%), Positives = 223/395 (56%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP+AHG R++L+LDGE + P IG HRG EK+ E +++ +
Sbjct: 210 TENEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 269
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 270 PYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQD 329
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 330 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPK 389
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L N I K R+ + ++A WG +G +R +G +D+RK++PY Y
Sbjct: 390 RLASYEKAALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYEN 449
Query: 243 LDFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF+IP+ G DCY R ++++ E+R+S++I+ QC+N + GP A P PP +
Sbjct: 450 FDFEIPVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNM----PEGPFKADHPLTTPPPK 505
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + +EA KG YL SDG YR +IR P
Sbjct: 506 ERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTISYRTRIRTPS 565
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YAHLQ + +G ++D+ LGS+D V +VDR
Sbjct: 566 YAHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR 600
>gi|307131812|ref|YP_003883828.1| NADH:ubiquinone oxidoreductase subunit C,D [Dickeya dadantii 3937]
gi|306529341|gb|ADM99271.1| NADH:ubiquinone oxidoreductase, chain C,D [Dickeya dadantii 3937]
Length = 599
Score = 371 bits (954), Expect = e-101, Method: Composition-based stats.
Identities = 150/395 (37%), Positives = 226/395 (57%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+N GP HP+AHG R+IL+L+GE + P IG HRG EK+ E +++ +
Sbjct: 209 TDNEDFMFLNLGPNHPSAHGAFRIILQLNGEEIVDCIPDIGYHHRGAEKMGERQSWHSYI 268
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GIE+P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 269 PYTDRIEYLGGCVNEMPYVLAVEKLAGIEVPERVNVIRVMLSELFRINSHLLYISTFIQD 328
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P+
Sbjct: 329 VGAMTPVFFAFTDRQKIYDLVEAITGYRMHPAWFRIGGVAHDLPRGWERLLREFLDWMPA 388
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R+ + ++A WG +G +R +G A+D+RK++PY Y
Sbjct: 389 RLDTYVKAALQNSILKGRSQGVAAYNAKEALEWGVTGAGLRATGIAFDVRKARPYSGYEN 448
Query: 243 LDFDIPIGK-HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF++P+G DCY R ++++ E+R+S++I+ QC+ + GP A P PP +
Sbjct: 449 FDFEVPVGDGVSDCYSRVMLKVEELRQSLRILEQCLKNM----PEGPFKADHPLTTPPPK 504
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI+HF + G +P E + +EA KG YL SDG YR +IR P
Sbjct: 505 ERTLQHIETLINHFLQVSWGPVMPANESFQMIEATKGVNSYYLTSDGSTMSYRTRIRTPS 564
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ HLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 565 FPHLQQIPSVIRGCLVSDLIVYLGSIDFVMSDVDR 599
>gi|217033584|ref|ZP_03439012.1| hypothetical protein HP9810_899g20 [Helicobacter pylori 98-10]
gi|216943930|gb|EEC23364.1| hypothetical protein HP9810_899g20 [Helicobacter pylori 98-10]
Length = 409
Score = 371 bits (954), Expect = e-101, Method: Composition-based stats.
Identities = 168/394 (42%), Positives = 241/394 (61%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +NFGPQHP++HG LRLILEL+GE + + P IG LHRG EKL E T+ + +
Sbjct: 18 EHDDNQMILNFGPQHPSSHGQLRLILELEGEKIIKATPEIGYLHRGCEKLGENMTYNEYM 77
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DRLDY + + +AYA AVE LL +EIP R Q+IR + E+ R++SH+ ++ A+D
Sbjct: 78 PTTDRLDYTSSTSNNYAYAHAVETLLNLEIPRRAQVIRTILLELNRMISHIFFISVHALD 137
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA++ L+ F+ RE + E G+R+ R GGV D+PP +E + +
Sbjct: 138 VGAMSVFLYAFKTREYGLDLMEDYCGARLTHNAIRIGGVPLDLPPNWLEGLKKFLGEMRE 197
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
I LL NRI++ R N+G V + A WG SG+M+RGSG A+D+RK +PYE Y E
Sbjct: 198 CKKLIQGLLDKNRIWRMRLENVGVVTPKMAQSWGMSGIMLRGSGIAYDIRKEEPYELYKE 257
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LDFD+P+G +GD YDRY + M+E+ ES++II Q + + P+ A +P + +
Sbjct: 258 LDFDVPVGNYGDSYDRYCLYMLEIDESIRIIEQLIPMYAKTD--TPIMAQNPHYISAPKE 315
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
D+ L+ HF L +G P+GEVYA E+PKGE G ++ S+G P+R KIRAP +
Sbjct: 316 DIMTQNYVLMQHFVLVAQGMRPPIGEVYAPTESPKGELGFFIHSEGEPYPHRLKIRAPSF 375
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H+ A+ + G LAD ++GS + VFGEVDR
Sbjct: 376 YHIGALSDILVGQYLADAVTVIGSTNAVFGEVDR 409
>gi|92115245|ref|YP_575173.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Chromohalobacter salexigens DSM 3043]
gi|122419106|sp|Q1QST4|NUOCD_CHRSD RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|91798335|gb|ABE60474.1| NADH dehydrogenase subunit C / NADH dehydrogenase subunit D
[Chromohalobacter salexigens DSM 3043]
Length = 592
Score = 371 bits (954), Expect = e-101, Method: Composition-based stats.
Identities = 148/393 (37%), Positives = 221/393 (56%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ + +N GP HP+AHG R+ L+LDGE+V P IG HRG EK+ E +++ +P
Sbjct: 204 ENTDYMFLNLGPNHPSAHGAFRIALQLDGEVVVDCVPDIGYHHRGAEKMAERQSWHSYIP 263
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY + Y +AVEKL GIE+ R + IRV+ +E+ RI SHLL + T D+
Sbjct: 264 YTDRIDYTGGVMNNLPYVMAVEKLAGIEVTDRAKTIRVMMAEMFRINSHLLFLGTYLQDL 323
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+TP + F +R+K E +G RMH A++R GG D+P + + + D P
Sbjct: 324 GAMTPVFFTFTDRQKAYEVIEGITGFRMHPAWYRIGGTAHDLPRGWDKLVQGFLDWMPKR 383
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L + + N I ++R + +A WG +G +R +G +DLRK +PY Y
Sbjct: 384 LVEYERAMMENAIIRERTKQVAAFTTREALEWGVTGPNLRATGCDFDLRKQRPYSGYENF 443
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DF++P+G +GD +DR +R+ EMR+S++II+QCV+ + G A P PP R
Sbjct: 444 DFEVPLGANGDVFDRGQLRIDEMRQSLRIIQQCVDHMPA----GDYKADHPLTTPPPREK 499
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
M + +E+LI HF + G + E + +EA KG YL +DG YR +IR P +
Sbjct: 500 MLQHIETLITHFLQVSWGPVLKPNESLSMIEATKGINSYYLTADGNTMSYRTRIRTPSFP 559
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ + +G + D+ A LGS+D V +VDR
Sbjct: 560 HLQQIPAAVRGALVPDLIAHLGSIDFVMADVDR 592
>gi|110642490|ref|YP_670220.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli 536]
gi|110806249|ref|YP_689769.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Shigella
flexneri 5 str. 8401]
gi|256017558|ref|ZP_05431423.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Shigella
sp. D9]
gi|309785010|ref|ZP_07679643.1| NADH-quinone oxidoreductase subunit C/D [Shigella dysenteriae 1617]
gi|122958187|sp|Q0TFG0|NUOCD_ECOL5 RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|123048061|sp|Q0T2K1|NUOCD_SHIF8 RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|110344082|gb|ABG70319.1| NADH dehydrogenase I chain C/D [Escherichia coli 536]
gi|110615797|gb|ABF04464.1| NADH dehydrogenase I chain C, D [Shigella flexneri 5 str. 8401]
gi|308927380|gb|EFP72854.1| NADH-quinone oxidoreductase subunit C/D [Shigella dysenteriae 1617]
gi|313651109|gb|EFS15508.1| NADH-quinone oxidoreductase subunit C/D [Shigella flexneri 2a str.
2457T]
gi|313848704|emb|CAQ32688.2| NADH:ubiquinone oxidoreductase, chain CD, subunit of connecting
fragment of NADH dehydrogenase I and NADH:ubiquinone
oxidoreductase I [Escherichia coli BL21(DE3)]
gi|323156436|gb|EFZ42591.1| NADH-quinone oxidoreductase subunit C/D [Escherichia coli EPECa14]
gi|323184395|gb|EFZ69771.1| NADH-quinone oxidoreductase subunit C/D [Escherichia coli 1357]
gi|332093480|gb|EGI98538.1| NADH-quinone oxidoreductase subunit C/D [Shigella boydii 3594-74]
gi|332766105|gb|EGJ96315.1| nuoC [Shigella flexneri 2930-71]
Length = 596
Score = 371 bits (954), Expect = e-101, Method: Composition-based stats.
Identities = 152/395 (38%), Positives = 223/395 (56%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP+AHG R++L+LDGE + P IG HRG EK+ E +++ +
Sbjct: 206 TENEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 265
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 266 PYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQD 325
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 326 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPK 385
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L N I K R+ + ++A WG +G +R +G +D+RK++PY Y
Sbjct: 386 RLASYEKAALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYEN 445
Query: 243 LDFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF+IP+ G DCY R ++++ E+R+S++I+ QC+N + GP A P PP +
Sbjct: 446 FDFEIPVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNM----PEGPFKADHPLTTPPPK 501
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + +EA KG YL SDG YR +IR P
Sbjct: 502 ERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPS 561
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YAHLQ + +G ++D+ LGS+D V +VDR
Sbjct: 562 YAHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR 596
>gi|150251540|ref|YP_001312272.1| NADH dehydrogenase subunit 7 [Cycas taitungensis]
gi|218527769|sp|A6H5P8|NDHH_CYCTA RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|149941590|dbj|BAF65014.1| NADH dehydrogenase subunit 7 [Cycas taitungensis]
gi|156597981|gb|ABU85257.1| NADH-plastoquinone oxidoreductase subunit 7 [Cycas micronesica]
Length = 393
Score = 371 bits (954), Expect = e-101, Method: Composition-based stats.
Identities = 164/393 (41%), Positives = 222/393 (56%), Gaps = 5/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ S ++ GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TEKDSVIVSMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIVQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E+L I++P R IRV+ E+ RI HLL + D+
Sbjct: 66 YVTRWDYLATMFTEAVTVNAPERLGNIQVPKRASCIRVIMLELSRIAPHLLWLGPFMADI 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + ERE + +E A+G RM YFR GGV D+P ++ +CD F S
Sbjct: 126 GAQTPFFYISREREIIYDLFEAATGMRMMHNYFRIGGVAVDLPYGWIDKCLDFCDYFLSK 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YECY E
Sbjct: 186 VAEYERLITRNPIFLERVEGVGIIGREEAIDWGLSGPMLRASGIQWDLRKVDHYECYDEF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+++ K GD RYLVR+ EM ES+KIIRQ + + G GP + + + +
Sbjct: 246 DWEVQWQKEGDSLARYLVRIGEMTESIKIIRQALKIIPG----GPYENLEARRLDKGKDS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + P E Y VEAPKGE G++L+ D P+R KIR PG+
Sbjct: 302 EWNDFE-FRFISKKPSPTFESPKQEHYVRVEAPKGELGIFLMGDDSIFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 361 NLQIPPQLVKSMKLADIMTILGSIDIIMGEVDR 393
>gi|261340674|ref|ZP_05968532.1| NADH-quinone oxidoreductase, C/D subunit [Enterobacter cancerogenus
ATCC 35316]
gi|288317088|gb|EFC56026.1| NADH-quinone oxidoreductase, C/D subunit [Enterobacter cancerogenus
ATCC 35316]
Length = 600
Score = 371 bits (954), Expect = e-101, Method: Composition-based stats.
Identities = 149/395 (37%), Positives = 223/395 (56%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +
Sbjct: 210 TDNEDFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 269
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 270 PYTDRIEYLGGCVNEMPYVLAVEKLAGITTPDRVNVIRVMLSELFRINSHLLYISTFIQD 329
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + + P
Sbjct: 330 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLEWMPK 389
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R+ + ++A WG +G +R +G +D+RK++PY Y
Sbjct: 390 RLDSYEKAALRNSILKGRSQGVAAYGAKEALEWGTTGAGLRAAGIDFDVRKARPYSGYEN 449
Query: 243 LDFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF++P+ G DCY R ++++ E+R+S++I++QC++ + GP A P PP +
Sbjct: 450 FDFEVPVGGGVSDCYTRVMLKVEELRQSLRILQQCLDNM----PEGPFKADHPLTTPPPK 505
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + VEA KG YL SDG YR ++R P
Sbjct: 506 ERTLQHIETLITHFLQVSWGPVMPAQESFQMVEATKGINSYYLTSDGSTMSYRTRVRTPS 565
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AHLQ + +G ++D+ LGS+D V +VDR
Sbjct: 566 FAHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR 600
>gi|170721055|ref|YP_001748743.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas putida W619]
gi|218528056|sp|B1J6N2|NUOCD_PSEPW RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|169759058|gb|ACA72374.1| NADH dehydrogenase I, D subunit [Pseudomonas putida W619]
Length = 593
Score = 371 bits (954), Expect = e-101, Method: Composition-based stats.
Identities = 150/390 (38%), Positives = 226/390 (57%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GP HP+AHG R++L+LDGE + P IG HRG EK+ E +++ +PY D
Sbjct: 208 DYMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMAERQSWHSFIPYTD 267
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+DY+ + Y LAVEKL GI++P + +IR++ +E RI SHLL + T DVGA+
Sbjct: 268 RIDYLGGVMNNLPYVLAVEKLAGIQVPQKVDVIRIMLAEFFRITSHLLFLGTYIQDVGAM 327
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP + F +R++ E +G R+H A++R GGV D+P + + + + P L++
Sbjct: 328 TPVFFTFTDRQRAYTVIEAITGFRLHPAWYRIGGVAHDLPRGWEKLVKDFVEWLPKRLDE 387
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ N I K R + + ++A WG +G +R +G +DLRK++PY Y +F+
Sbjct: 388 YTKAALQNSILKGRTIGVAAYNTKEALEWGTTGAGLRATGCDFDLRKARPYSGYENFEFE 447
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+P+ +GD YDR +VR+ EMR+S++II QC+ + GP A P PP + +
Sbjct: 448 VPLAHNGDAYDRCMVRVEEMRQSIRIIDQCLRNM----PEGPYKADHPLTTPPPKERTLQ 503
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+E+LI HF + G +P E + +EA KG YL SDGG YR +IR P Y HLQ
Sbjct: 504 HIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGGTMSYRTRIRTPSYPHLQ 563
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + KG +AD+ A LGS+D V +VDR
Sbjct: 564 QIPSVIKGSMVADLIAYLGSIDFVMADVDR 593
>gi|167034689|ref|YP_001669920.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas putida GB-1]
gi|218528055|sp|B0KMY0|NUOCD_PSEPG RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|166861177|gb|ABY99584.1| NADH dehydrogenase I, D subunit [Pseudomonas putida GB-1]
Length = 593
Score = 371 bits (954), Expect = e-101, Method: Composition-based stats.
Identities = 150/390 (38%), Positives = 226/390 (57%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GP HP+AHG R++L+LDGE + P IG HRG EK+ E +++ +PY D
Sbjct: 208 DYMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMAERQSWHSFIPYTD 267
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+DY+ + Y LAVEKL GI++P + +IR++ +E RI SHLL + T DVGA+
Sbjct: 268 RIDYLGGVMNNLPYVLAVEKLAGIKVPQKVDVIRIMLAEFFRITSHLLFLGTYIQDVGAM 327
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP + F +R++ E +G R+H A++R GGV D+P + + + + P L++
Sbjct: 328 TPVFFTFTDRQRAYTVIEAITGFRLHPAWYRIGGVAHDLPRGWDKLVKDFVEWLPKRLDE 387
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ N I K R + + ++A WG +G +R +G +DLRK++PY Y +F+
Sbjct: 388 YTKAALQNSILKGRTIGVAAYNTKEALEWGTTGAGLRSTGCDFDLRKARPYSGYENFEFE 447
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+P+ +GD YDR +VR+ EMR+S++II QC+ + GP A P PP + +
Sbjct: 448 VPLAHNGDAYDRCMVRVEEMRQSIRIIDQCLRNM----PEGPYKADHPLTTPPPKERTLQ 503
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+E+LI HF + G +P E + +EA KG YL SDGG YR +IR P Y HLQ
Sbjct: 504 HIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGGTMSYRTRIRTPSYPHLQ 563
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + KG +AD+ A LGS+D V +VDR
Sbjct: 564 QIPSVIKGSMVADLIAYLGSIDFVMADVDR 593
>gi|219681531|ref|YP_002467916.1| NADH dehydrogenase I chain C/D [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|257471212|ref|ZP_05635211.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Buchnera
aphidicola str. LSR1 (Acyrthosiphon pisum)]
gi|254767801|sp|B8D8V7|NUOCD_BUCA5 RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|219624374|gb|ACL30529.1| NADH dehydrogenase I chain C/D [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
Length = 600
Score = 371 bits (954), Expect = e-101, Method: Composition-based stats.
Identities = 143/391 (36%), Positives = 222/391 (56%), Gaps = 5/391 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GP HP+AHG R++L+LDGE + P IG HRG EK+ E +++ +PY D
Sbjct: 214 EFMFLNLGPNHPSAHGAFRIVLQLDGENIVDCVPDIGYHHRGAEKMAERQSWHSYIPYTD 273
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R++Y+ E Y LAVEKL I +P + ++IRV+ SE+ RI SHLL ++T DVG +
Sbjct: 274 RIEYLGGCVNELPYVLAVEKLANISVPEKAEVIRVMMSELFRINSHLLYISTFIQDVGCM 333
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP + F +R+K+ E +G+RMH A+FR GGV D+P + + D P L
Sbjct: 334 TPVFFAFTDRQKIYDLIEAITGARMHPAWFRIGGVANDLPQGWNILLKEFLDWMPKRLKY 393
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ N I R+ I ++A WG +G +R +G +D+RK +PY Y F+
Sbjct: 394 YINTALKNSILIHRSKGIAEYNKKEALQWGVTGAGLRATGLNFDVRKWRPYSGYQNYTFE 453
Query: 247 IPIGK-HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+P+G DCY R ++++ E+ +S+ I++QC+ + GP + D PP + +
Sbjct: 454 VPVGSGISDCYSRVMIKVEEIYQSLFILKQCLCNM----PSGPFKSEDSLTTPPSKECVF 509
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
+++E++I HF + G +P E + +EA KG YLISDGG YR +IR P + HL
Sbjct: 510 QNIETMITHFLQVSWGPVIPENESFQMIEATKGINSYYLISDGGTMSYRTRIRTPSFPHL 569
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Q + + +G ++D+ LGS+D V +VDR
Sbjct: 570 QQIPSVIRGSLISDLIVYLGSIDFVMSDVDR 600
>gi|170767524|ref|ZP_02901977.1| NADH-quinone oxidoreductase, C/D subunit [Escherichia albertii
TW07627]
gi|170123858|gb|EDS92789.1| NADH-quinone oxidoreductase, C/D subunit [Escherichia albertii
TW07627]
Length = 600
Score = 371 bits (954), Expect = e-101, Method: Composition-based stats.
Identities = 152/395 (38%), Positives = 222/395 (56%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP+AHG R++L+LDGE + P IG HRG EK+ E +++ +
Sbjct: 210 TENEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 269
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 270 PYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQD 329
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 330 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPK 389
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L N I K R+ + ++A WG +G +R +G +D+RK++PY Y
Sbjct: 390 RLASYEKAALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYEN 449
Query: 243 LDFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF+IP+ G DCY R ++++ E+ +S++I+ QC+N + GP A P PP +
Sbjct: 450 FDFEIPVGGGVSDCYTRVMLKVEELHQSLRILEQCLNNM----PEGPFKADHPLTTPPPK 505
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + VEA KG YL SDG YR +IR P
Sbjct: 506 ERTLQHIETLITHFLQVSWGPVMPANESFQMVEATKGINSYYLTSDGSTMSYRTRIRTPS 565
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YAHLQ + +G ++D+ LGS+D V +VDR
Sbjct: 566 YAHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR 600
>gi|15802833|ref|NP_288860.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli O157:H7 EDL933]
gi|15832424|ref|NP_311197.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli O157:H7 str. Sakai]
gi|168748135|ref|ZP_02773157.1| NADH-quinone oxidoreductase, C/D subunit [Escherichia coli O157:H7
str. EC4113]
gi|168755038|ref|ZP_02780045.1| NADH-quinone oxidoreductase, C/D subunit [Escherichia coli O157:H7
str. EC4401]
gi|168761275|ref|ZP_02786282.1| NADH-quinone oxidoreductase, C/D subunit [Escherichia coli O157:H7
str. EC4501]
gi|168767912|ref|ZP_02792919.1| NADH-quinone oxidoreductase, C/D subunit [Escherichia coli O157:H7
str. EC4486]
gi|168772988|ref|ZP_02797995.1| NADH-quinone oxidoreductase, C/D subunit [Escherichia coli O157:H7
str. EC4196]
gi|168780141|ref|ZP_02805148.1| NADH-quinone oxidoreductase, C/D subunit [Escherichia coli O157:H7
str. EC4076]
gi|168787193|ref|ZP_02812200.1| NADH-quinone oxidoreductase, C/D subunit [Escherichia coli O157:H7
str. EC869]
gi|168798456|ref|ZP_02823463.1| NADH-quinone oxidoreductase, C/D subunit [Escherichia coli O157:H7
str. EC508]
gi|195935663|ref|ZP_03081045.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli O157:H7 str. EC4024]
gi|208807369|ref|ZP_03249706.1| NADH-quinone oxidoreductase, C/D subunit [Escherichia coli O157:H7
str. EC4206]
gi|208814268|ref|ZP_03255597.1| NADH-quinone oxidoreductase, C/D subunit [Escherichia coli O157:H7
str. EC4045]
gi|208820998|ref|ZP_03261318.1| NADH-quinone oxidoreductase, C/D subunit [Escherichia coli O157:H7
str. EC4042]
gi|209398773|ref|YP_002271695.1| NADH-quinone oxidoreductase, C/D subunit [Escherichia coli O157:H7
str. EC4115]
gi|217327314|ref|ZP_03443397.1| NADH-quinone oxidoreductase, C/D subunit [Escherichia coli O157:H7
str. TW14588]
gi|261223260|ref|ZP_05937541.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli O157:H7 str. FRIK2000]
gi|261259190|ref|ZP_05951723.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli O157:H7 str. FRIK966]
gi|291283527|ref|YP_003500345.1| NADH-quinone oxidoreductase, C/D subunit [Escherichia coli O55:H7
str. CB9615]
gi|81765938|sp|Q8XCW9|NUOCD_ECO57 RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|226737314|sp|B5YXS6|NUOCD_ECO5E RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|12516636|gb|AAG57415.1|AE005460_9 NADH dehydrogenase I chain C, D [Escherichia coli O157:H7 str.
EDL933]
gi|13362640|dbj|BAB36593.1| NADH dehydrogenase I chain C/D [Escherichia coli O157:H7 str.
Sakai]
gi|187771332|gb|EDU35176.1| NADH-quinone oxidoreductase, C/D subunit [Escherichia coli O157:H7
str. EC4196]
gi|188017237|gb|EDU55359.1| NADH-quinone oxidoreductase, C/D subunit [Escherichia coli O157:H7
str. EC4113]
gi|189002209|gb|EDU71195.1| NADH-quinone oxidoreductase, C/D subunit [Escherichia coli O157:H7
str. EC4076]
gi|189357692|gb|EDU76111.1| NADH-quinone oxidoreductase, C/D subunit [Escherichia coli O157:H7
str. EC4401]
gi|189362958|gb|EDU81377.1| NADH-quinone oxidoreductase, C/D subunit [Escherichia coli O157:H7
str. EC4486]
gi|189368302|gb|EDU86718.1| NADH-quinone oxidoreductase, C/D subunit [Escherichia coli O157:H7
str. EC4501]
gi|189372802|gb|EDU91218.1| NADH-quinone oxidoreductase, C/D subunit [Escherichia coli O157:H7
str. EC869]
gi|189379012|gb|EDU97428.1| NADH-quinone oxidoreductase, C/D subunit [Escherichia coli O157:H7
str. EC508]
gi|208727170|gb|EDZ76771.1| NADH-quinone oxidoreductase, C/D subunit [Escherichia coli O157:H7
str. EC4206]
gi|208735545|gb|EDZ84232.1| NADH-quinone oxidoreductase, C/D subunit [Escherichia coli O157:H7
str. EC4045]
gi|208741121|gb|EDZ88803.1| NADH-quinone oxidoreductase, C/D subunit [Escherichia coli O157:H7
str. EC4042]
gi|209160173|gb|ACI37606.1| NADH-quinone oxidoreductase, C/D subunit [Escherichia coli O157:H7
str. EC4115]
gi|209765090|gb|ACI80857.1| NADH dehydrogenase I chain C/D [Escherichia coli]
gi|209765092|gb|ACI80858.1| NADH dehydrogenase I chain C/D [Escherichia coli]
gi|209765094|gb|ACI80859.1| NADH dehydrogenase I chain C/D [Escherichia coli]
gi|209765096|gb|ACI80860.1| NADH dehydrogenase I chain C/D [Escherichia coli]
gi|217319681|gb|EEC28106.1| NADH-quinone oxidoreductase, C/D subunit [Escherichia coli O157:H7
str. TW14588]
gi|290763400|gb|ADD57361.1| NADH-quinone oxidoreductase, C/D subunit [Escherichia coli O55:H7
str. CB9615]
gi|320192093|gb|EFW66738.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli O157:H7 str. EC1212]
gi|320641113|gb|EFX10592.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli O157:H7 str. G5101]
gi|320657350|gb|EFX25152.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli O55:H7 str. 3256-97 TW 07815]
gi|320663052|gb|EFX30369.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli O55:H7 str. USDA 5905]
gi|320667870|gb|EFX34778.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli O157:H7 str. LSU-61]
gi|326339637|gb|EGD63448.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli O157:H7 str. 1125]
gi|326344099|gb|EGD67860.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli O157:H7 str. 1044]
Length = 600
Score = 371 bits (954), Expect = e-101, Method: Composition-based stats.
Identities = 152/395 (38%), Positives = 223/395 (56%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP+AHG R++L+LDGE + P IG HRG EK+ E +++ +
Sbjct: 210 TENEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 269
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 270 PYTDRIEYLGGCVNEMPYVLAVEKLAGITVPARVNVIRVMLSELFRINSHLLYISTFIQD 329
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 330 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPK 389
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L N I K R+ + ++A WG +G +R +G +D+RK++PY Y
Sbjct: 390 RLASYEKAALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYEN 449
Query: 243 LDFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF+IP+ G DCY R ++++ E+R+S++I+ QC+N + GP A P PP +
Sbjct: 450 FDFEIPVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNM----PEGPFKADHPLTTPPPK 505
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + +EA KG YL SDG YR +IR P
Sbjct: 506 ERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPS 565
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YAHLQ + +G ++D+ LGS+D V +VDR
Sbjct: 566 YAHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR 600
>gi|62180896|ref|YP_217313.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|224583188|ref|YP_002636986.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Paratyphi C strain
RKS4594]
gi|254767807|sp|C0Q041|NUOCD_SALPC RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|62128529|gb|AAX66232.1| NADH dehydrogenase I chain C,D [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|224467715|gb|ACN45545.1| NADH dehydrogenase I chain C,D [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|322715375|gb|EFZ06946.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Choleraesuis str. A50]
Length = 600
Score = 371 bits (954), Expect = e-101, Method: Composition-based stats.
Identities = 148/395 (37%), Positives = 222/395 (56%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +
Sbjct: 210 TDNEDFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 269
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI + R +IRV+ SE+ RI SHLL ++T D
Sbjct: 270 PYTDRIEYLGGCVNEMPYVLAVEKLAGITVSDRVNVIRVMLSELFRINSHLLYISTFIQD 329
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + + P
Sbjct: 330 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLEWMPK 389
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R+ + ++A WG +G +R +G +D+RK +PY Y
Sbjct: 390 RLDSYEKAALRNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKWRPYSGYEN 449
Query: 243 LDFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF++P+ G DCY R ++++ E+R+S++I++QC++ + GP A P PP +
Sbjct: 450 FDFEVPVGGGVSDCYTRVMLKVEELRQSLRILQQCLDNM----PEGPFKADHPLTTPPPK 505
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + VEA KG YL SDG YR ++R P
Sbjct: 506 ERTLQHIETLITHFLQVSWGPVMPAQESFQMVEATKGINSYYLTSDGSTMSYRTRVRTPS 565
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AHLQ + +G ++D+ LGS+D V +VDR
Sbjct: 566 FAHLQQIPSAIRGSLVSDLIVYLGSIDFVMSDVDR 600
>gi|157144783|ref|YP_001452102.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Citrobacter koseri ATCC BAA-895]
gi|218528037|sp|A8ADV3|NUOCD_CITK8 RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|157081988|gb|ABV11666.1| hypothetical protein CKO_00510 [Citrobacter koseri ATCC BAA-895]
Length = 600
Score = 371 bits (953), Expect = e-101, Method: Composition-based stats.
Identities = 153/395 (38%), Positives = 224/395 (56%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP++HG R++L+LDGE + P IG HRG EK+ E +++ +
Sbjct: 210 TENEDFMFLNLGPNHPSSHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 269
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 270 PYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQD 329
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 330 VGAMTPVFFAFTDRQKIYDVVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLRDFLDWMPK 389
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R+ + ++A WG +G +R +G +D+RKS+PY Y
Sbjct: 390 RLDSYEKAALRNTILKGRSQGVAAYGKKEALDWGCTGAALRATGIDFDVRKSRPYSGYEN 449
Query: 243 LDFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF+IP+ G DCY R ++++ E+R+S++I+ QC+N + GP A P PP +
Sbjct: 450 FDFEIPVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNM----PEGPFKADHPLTTPPPK 505
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + VEA KG YL SDG YR +IR P
Sbjct: 506 ERTLQHIETLITHFLQVSWGPVMPANESFQMVEATKGINSYYLTSDGSTMSYRTRIRTPS 565
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YAHLQ + +G ++D+ LGS+D V +VDR
Sbjct: 566 YAHLQQIPVAVRGSLVSDLIVHLGSIDFVMSDVDR 600
>gi|26990815|ref|NP_746240.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas putida KT2440]
gi|81586000|sp|Q88FH5|NUOCD_PSEPK RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|24985821|gb|AAN69704.1|AE016606_7 NADH dehydrogenase I, C,D subunit [Pseudomonas putida KT2440]
gi|313498029|gb|ADR59395.1| NuoCD [Pseudomonas putida BIRD-1]
Length = 593
Score = 371 bits (953), Expect = e-101, Method: Composition-based stats.
Identities = 150/390 (38%), Positives = 226/390 (57%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GP HP+AHG R++L+LDGE + P IG HRG EK+ E +++ +PY D
Sbjct: 208 DYMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMAERQSWHSFIPYTD 267
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+DY+ + Y LAVEKL GI++P + +IR++ +E RI SHLL + T DVGA+
Sbjct: 268 RIDYLGGVMNNLPYVLAVEKLAGIKVPQKVDVIRIMLAEFFRITSHLLFLGTYIQDVGAM 327
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP + F +R++ E +G R+H A++R GGV D+P + + + + P L++
Sbjct: 328 TPVFFTFTDRQRAYTVIEAITGFRLHPAWYRIGGVAHDLPRGWDKLVKDFVEWLPKRLDE 387
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ N I K R + + ++A WG +G +R +G +DLRK++PY Y +F+
Sbjct: 388 YTKAALQNSILKGRTIGVAAYNTKEALEWGTTGAGLRATGCNFDLRKARPYSGYENFEFE 447
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+P+ +GD YDR +VR+ EMR+S++II QC+ + GP A P PP + +
Sbjct: 448 VPLAHNGDAYDRCMVRVEEMRQSIRIIDQCLRNM----PEGPYKADHPLTTPPPKERTLQ 503
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+E+LI HF + G +P E + +EA KG YL SDGG YR +IR P Y HLQ
Sbjct: 504 HIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGGTMSYRTRIRTPSYPHLQ 563
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + KG +AD+ A LGS+D V +VDR
Sbjct: 564 QIPSVIKGSMVADLIAYLGSIDFVMADVDR 593
>gi|283786354|ref|YP_003366219.1| NADH-quinone oxidoreductase subunit C/D [Citrobacter rodentium
ICC168]
gi|282949808|emb|CBG89431.1| NADH-quinone oxidoreductase subunit C/D [Citrobacter rodentium
ICC168]
Length = 600
Score = 371 bits (953), Expect = e-101, Method: Composition-based stats.
Identities = 151/395 (38%), Positives = 223/395 (56%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +
Sbjct: 210 TENEDFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 269
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 270 PYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQD 329
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 330 VGAMTPVFFAFTDRQKIYDLVEAITGYRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPK 389
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L N I K R+ + ++A WG +G +R +G +D+RK++PY Y
Sbjct: 390 RLASYEKAALRNTILKGRSQGVAAYGGKEALEWGTTGAGLRAAGIDFDVRKARPYSGYEN 449
Query: 243 LDFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF++P+ G DCY R ++++ E+R+S++I+ QC+N + GP A P PP +
Sbjct: 450 FDFEVPVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNM----PEGPFKADHPLTTPPPK 505
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + VEA KG YL SDG YR ++R P
Sbjct: 506 ERTLQHIETLITHFLQVSWGPVMPANESFQMVEATKGINSYYLTSDGSTMSYRTRVRTPS 565
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AHLQ + +G ++D+ LGS+D V +VDR
Sbjct: 566 FAHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR 600
>gi|325277476|ref|ZP_08143081.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas sp. TJI-51]
gi|324097392|gb|EGB95633.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas sp. TJI-51]
Length = 593
Score = 371 bits (953), Expect = e-101, Method: Composition-based stats.
Identities = 150/390 (38%), Positives = 226/390 (57%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GP HP+AHG R++L+LDGE + P IG HRG EK+ E +++ +PY D
Sbjct: 208 DYMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMAERQSWHSFIPYTD 267
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+DY+ + Y LAVEKL GI++P + +IR++ +E RI SHLL + T DVGA+
Sbjct: 268 RIDYLGGVMNNLPYVLAVEKLAGIQVPQKVDVIRIMLAEFFRITSHLLFLGTYIQDVGAM 327
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP + F +R++ E +G R+H A++R GGV D+P + + + + P L++
Sbjct: 328 TPVFFTFTDRQRAYTVIEAITGFRLHPAWYRIGGVAHDLPRGWDKLVKDFVEWLPKRLDE 387
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ N I K R + + ++A WG +G +R +G +DLRK++PY Y +F+
Sbjct: 388 YTKAALQNSILKGRTIGVAAYNTKEALAWGTTGAGLRATGCDFDLRKARPYSGYENFEFE 447
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+P+ +GD YDR +VR+ EMR+S++II QC+ + GP A P PP + +
Sbjct: 448 VPLAHNGDAYDRCMVRVEEMRQSIRIIDQCLRNM----PEGPYKADHPLTTPPPKERTLQ 503
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+E+LI HF + G +P E + +EA KG YL SDGG YR +IR P Y HLQ
Sbjct: 504 HIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGGTMSYRTRIRTPSYPHLQ 563
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + KG +AD+ A LGS+D V +VDR
Sbjct: 564 QIPSVIKGSMVADLIAYLGSIDFVMADVDR 593
>gi|159902731|ref|YP_001550075.1| NAD(P)H-quinone oxidoreductase subunit H [Prochlorococcus marinus
str. MIT 9211]
gi|229891151|sp|A9BD33|NDHH_PROM4 RecName: Full=NAD(P)H-quinone oxidoreductase subunit H; AltName:
Full=NAD(P)H dehydrogenase subunit H; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H;
AltName: Full=NDH-1 subunit H; Short=NDH-H
gi|159887907|gb|ABX08121.1| putative NADH dehydrogenase subunit [Prochlorococcus marinus str.
MIT 9211]
Length = 394
Score = 371 bits (953), Expect = e-101, Method: Composition-based stats.
Identities = 156/395 (39%), Positives = 224/395 (56%), Gaps = 6/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +NFGP HP+ HGVLRL++ LDGE V +P IG LHRG EK+ E +T + V
Sbjct: 5 ETRTEPMVVNFGPHHPSMHGVLRLVVTLDGEDVVDCEPVIGYLHRGMEKIAENRTNVMFV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R+DY A M E A E+L I +P R IRVL E+ RI +HLL + D
Sbjct: 65 PYVSRMDYAAGMFYEAIVVNAPERLAKISVPKRASYIRVLMLELNRIANHLLWLGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSR-MHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E A+G R ++ YFR GGV D+P +E +C F
Sbjct: 125 VGAQTPFFYIFREREMIYDLWEAATGQRLINNNYFRIGGVACDLPSGWLEKCTDFCKWFG 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R +G + E+A W SG M+R SG +WDLRK YECY
Sbjct: 185 PKIDEYEKLITNNPIFRRRIEGLGAISREEAINWSLSGPMLRASGVSWDLRKVDHYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+ I GDC+ RY VR+ EMR+S+KI+ Q + G GP + + +
Sbjct: 245 DFDWSISTATEGDCFARYRVRIEEMRQSLKILLQACEMIPG----GPTENLEASRMLEGK 300
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
K + + K + +P GE+Y +E+ KGE GV++ + P+R KIRA
Sbjct: 301 GS-KFAGFDYQYVAKKVAPTFKIPDGELYTRLESGKGEIGVFIQGNNDVTPWRFKIRAAD 359
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + + KG ++AD+ AILGS+D++ G VDR
Sbjct: 360 LNNLQILPHILKGAKVADIMAILGSIDVIMGSVDR 394
>gi|218534348|sp|Q57M30|NUOCD_SALCH RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
Length = 596
Score = 371 bits (953), Expect = e-100, Method: Composition-based stats.
Identities = 148/395 (37%), Positives = 222/395 (56%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +
Sbjct: 206 TDNEDFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 265
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI + R +IRV+ SE+ RI SHLL ++T D
Sbjct: 266 PYTDRIEYLGGCVNEMPYVLAVEKLAGITVSDRVNVIRVMLSELFRINSHLLYISTFIQD 325
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + + P
Sbjct: 326 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLEWMPK 385
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R+ + ++A WG +G +R +G +D+RK +PY Y
Sbjct: 386 RLDSYEKAALRNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKWRPYSGYEN 445
Query: 243 LDFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF++P+ G DCY R ++++ E+R+S++I++QC++ + GP A P PP +
Sbjct: 446 FDFEVPVGGGVSDCYTRVMLKVEELRQSLRILQQCLDNM----PEGPFKADHPLTTPPPK 501
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + VEA KG YL SDG YR ++R P
Sbjct: 502 ERTLQHIETLITHFLQVSWGPVMPAQESFQMVEATKGINSYYLTSDGSTMSYRTRVRTPS 561
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AHLQ + +G ++D+ LGS+D V +VDR
Sbjct: 562 FAHLQQIPSAIRGSLVSDLIVYLGSIDFVMSDVDR 596
>gi|148546982|ref|YP_001267084.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas putida F1]
gi|218528054|sp|A5W190|NUOCD_PSEP1 RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|148511040|gb|ABQ77900.1| NADH dehydrogenase I, D subunit [Pseudomonas putida F1]
Length = 593
Score = 371 bits (953), Expect = e-100, Method: Composition-based stats.
Identities = 150/390 (38%), Positives = 226/390 (57%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GP HP+AHG R++L+LDGE + P IG HRG EK+ E +++ +PY D
Sbjct: 208 DYMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMAERQSWHSFIPYTD 267
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+DY+ + Y LAVEKL GI++P + +IR++ +E RI SHLL + T DVGA+
Sbjct: 268 RIDYLGGVMNNLPYVLAVEKLAGIKVPQKVDVIRIMLAEFFRITSHLLFLGTYIQDVGAM 327
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP + F +R++ E +G R+H A++R GGV D+P + + + + P L++
Sbjct: 328 TPVFFTFTDRQRAYTVIEAITGFRLHPAWYRIGGVAHDLPRGWDKLVKDFVEWLPKRLDE 387
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ N I K R + + ++A WG +G +R +G +DLRK++PY Y +F+
Sbjct: 388 YTKAALQNSILKGRTIGVAAYNTKEALEWGTTGAGLRATGCNFDLRKARPYSGYENFEFE 447
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+P+ +GD YDR +VR+ EMR+S++II QC+ + GP A P PP + +
Sbjct: 448 VPLAHNGDAYDRCMVRVEEMRQSIRIIDQCLRNM----PEGPYKADHPLTTPPPKERTLQ 503
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+E+LI HF + G +P E + +EA KG YL SDGG YR +IR P Y HLQ
Sbjct: 504 HIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGGTMSYRTRIRTPSYPHLQ 563
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + KG +AD+ A LGS+D V +VDR
Sbjct: 564 QIPSVIKGSMVADLIAYLGSIDFVMADVDR 593
>gi|254794178|ref|YP_003079015.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli O157:H7 str. TW14359]
gi|254593578|gb|ACT72939.1| NADH:ubiquinone oxidoreductase, chain C,D [Escherichia coli O157:H7
str. TW14359]
Length = 596
Score = 371 bits (953), Expect = e-100, Method: Composition-based stats.
Identities = 152/395 (38%), Positives = 223/395 (56%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP+AHG R++L+LDGE + P IG HRG EK+ E +++ +
Sbjct: 206 TENEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 265
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 266 PYTDRIEYLGGCVNEMPYVLAVEKLAGITVPARVNVIRVMLSELFRINSHLLYISTFIQD 325
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 326 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPK 385
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L N I K R+ + ++A WG +G +R +G +D+RK++PY Y
Sbjct: 386 RLASYEKAALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYEN 445
Query: 243 LDFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF+IP+ G DCY R ++++ E+R+S++I+ QC+N + GP A P PP +
Sbjct: 446 FDFEIPVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNM----PEGPFKADHPLTTPPPK 501
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + +EA KG YL SDG YR +IR P
Sbjct: 502 ERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPS 561
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YAHLQ + +G ++D+ LGS+D V +VDR
Sbjct: 562 YAHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR 596
>gi|444013|emb|CAA48363.1| NADH dehydrogenase I, subunit nuoD [Escherichia coli]
Length = 407
Score = 371 bits (953), Expect = e-100, Method: Composition-based stats.
Identities = 149/395 (37%), Positives = 223/395 (56%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP+AHG R++L+LDGE + P IG HRG EK+ E +++ +
Sbjct: 17 TENEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 76
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 77 PYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQD 136
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 137 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVADDLPRGWDRLLREFLDWMPK 196
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L N I K R+ + + ++A WG +G +R +G +D+RK++PY Y
Sbjct: 197 RLASYEKAALQNTILKGRSQGVAPMARKEALEWGTTGAGLRATGIDFDVRKARPYSGYEN 256
Query: 243 LDFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF+IP+ G DCY R ++++ E+R+S++I+ QC+N + GP P PP +
Sbjct: 257 FDFEIPVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNM----PEGPFKRDHPLTTPPPK 312
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + +EA KG YL SDG YR ++R P
Sbjct: 313 ERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPS 372
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AHLQ + +G ++D+ LGS+D V +VDR
Sbjct: 373 FAHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR 407
>gi|331017273|gb|EGH97329.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas syringae pv. lachrymans str. M302278PT]
Length = 593
Score = 371 bits (953), Expect = e-100, Method: Composition-based stats.
Identities = 152/393 (38%), Positives = 227/393 (57%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +P
Sbjct: 205 QNEDYMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMAERQSWHSFIP 264
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ + Y L+VEKL GI++P + +IR++ +E RI SHLL + T DV
Sbjct: 265 YTDRIDYLGGVMNNLPYVLSVEKLAGIKVPEKVDVIRIMMAEFFRITSHLLFLGTYIQDV 324
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+TP + F +R+K E +G R+H A++R GGV D+P + + + D P
Sbjct: 325 GAMTPVFFTFTDRQKAYTVIEAITGFRLHPAWYRIGGVAHDLPRGWEKLVKDFVDWLPKR 384
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L++ + N I K R V + ++A WG +G +R +G +DLRK++PY Y
Sbjct: 385 LDEYTKAALQNSILKGRTVGVAAYNTKEALEWGVTGAGLRSTGCDFDLRKARPYSGYENF 444
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+F++P+ +GD YDR +VR+ EMR+S+KII QC+ + GP A P PP +
Sbjct: 445 EFEVPLAANGDAYDRCMVRVEEMRQSIKIIDQCMRNM----PEGPYKADHPLTTPPPKER 500
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ +E+LI HF + G +P E + +EA KG YL SDGG YR +IR P +
Sbjct: 501 TLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGGTMSYRTRIRTPSFP 560
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ + + +G +AD+ A LGS+D V +VDR
Sbjct: 561 HLQQIPPVIQGSMVADLIAYLGSIDFVMADVDR 593
>gi|124024412|ref|YP_001018719.1| NAD(P)H-quinone oxidoreductase subunit H [Prochlorococcus marinus
str. MIT 9303]
gi|229891150|sp|A2CD94|NDHH_PROM3 RecName: Full=NAD(P)H-quinone oxidoreductase subunit H; AltName:
Full=NAD(P)H dehydrogenase subunit H; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H;
AltName: Full=NDH-1 subunit H; Short=NDH-H
gi|123964698|gb|ABM79454.1| putative NADH dehydrogenase subunit [Prochlorococcus marinus str.
MIT 9303]
Length = 394
Score = 371 bits (953), Expect = e-100, Method: Composition-based stats.
Identities = 158/395 (40%), Positives = 227/395 (57%), Gaps = 6/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +NFGP HP+ HGVLRL++ LDGE V +P IG LHRG EK+ E +T + V
Sbjct: 5 ETRTEPMVVNFGPHHPSMHGVLRLVVTLDGEDVVDCEPVIGYLHRGMEKIAENRTSVMFV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R+DY A M E A E+L I +P R IRV+ E+ RI +HLL + D
Sbjct: 65 PYVSRMDYAAGMFYEAIVVNAPERLANISVPKRASYIRVVMLELNRIANHLLWLGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSR-MHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E A+G R ++ YFR GGV D+P +E +CD F
Sbjct: 125 VGAQTPFFYIFREREMIYDLWEAATGQRLINNNYFRIGGVACDLPWGWLEKCQDFCDWFG 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R +G + ++A W SG M+R SG WDLRK YECY
Sbjct: 185 PKIDEYEKLITNNPIFRRRIEGLGAIGRDEAINWSLSGPMLRASGVPWDLRKVDHYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+D+ K GDCY RY VR+ EMR+S+KI+RQ + G GP + + + +
Sbjct: 245 DFDWDVAWEKEGDCYARYRVRIEEMRQSLKILRQACEMIPG----GPTENLEAQRMAEGK 300
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ + K + +P GE+Y +E+ KGE GV+L + P+R KIRA
Sbjct: 301 KSPFTGFD-YQYVSKKVAPTFKIPNGELYTRLESGKGEIGVFLQGNNDVTPWRFKIRAAD 359
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + + KG ++AD+ AILGS+D++ G VDR
Sbjct: 360 LNNLQILPHILKGAKVADIMAILGSIDVIMGSVDR 394
>gi|87123571|ref|ZP_01079422.1| NADH dehydrogenase (ubiquinone) [Synechococcus sp. RS9917]
gi|86169291|gb|EAQ70547.1| NADH dehydrogenase (ubiquinone) [Synechococcus sp. RS9917]
Length = 394
Score = 371 bits (953), Expect = e-100, Method: Composition-based stats.
Identities = 159/395 (40%), Positives = 230/395 (58%), Gaps = 6/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +NFGP HP+ HGVLRL++ LDGE V +P IG LHRG EK+ E +T + V
Sbjct: 5 ETRTEPMVVNFGPHHPSMHGVLRLVVTLDGEDVVDCEPVIGYLHRGMEKIAENRTNVMFV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R+DY A M E A E+L I +P R IRVL E+ RI +HLL + D
Sbjct: 65 PYVSRMDYAAGMFYEAIVVNAPERLADIPVPKRASYIRVLMLELNRIANHLLWLGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSR-MHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E A+G R ++ YFR GGV D+P +E +CD F
Sbjct: 125 VGAQTPFFYIFREREMIYDLWEAATGQRLINNNYFRIGGVAADLPFGWLEKCRDFCDWFG 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R +GT+ E+A W SG M+R SG WDLRK YECY
Sbjct: 185 PKIDEYEKLITNNPIFRRRIEGLGTIGREEAINWSLSGPMLRASGVPWDLRKVDHYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+D+ GDC+ RY VR+ EMR+S+KI+RQ + + G GP + + + +
Sbjct: 245 DFDWDVAWENEGDCFARYRVRIEEMRQSLKILRQACDMIPG----GPTENLEARRMAEGK 300
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ + + K + +P GE+Y +E+ KGE GV++ + P+R KIRA
Sbjct: 301 SSDFAGFD-YQYVAKKVAPTFKIPNGELYTRLESGKGEIGVFIQGNNDVTPWRFKIRAAD 359
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + + KGH++AD+ AILGS+D++ G VDR
Sbjct: 360 SNNLQILPHILKGHKVADIMAILGSIDVIMGSVDR 394
>gi|193212955|ref|YP_001998908.1| NADH dehydrogenase (quinone) [Chlorobaculum parvum NCIB 8327]
gi|218534399|sp|B3QP55|NUOD_CHLP8 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|193086432|gb|ACF11708.1| NADH dehydrogenase (quinone) [Chlorobaculum parvum NCIB 8327]
Length = 400
Score = 371 bits (952), Expect = e-100, Method: Composition-based stats.
Identities = 166/400 (41%), Positives = 227/400 (56%), Gaps = 32/400 (8%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ GPQHP+ HGVLRL DGE++ +P++G LHR EK E + V
Sbjct: 27 DLDTEHMVLSMGPQHPSTHGVLRLECITDGEVIVEAEPYLGYLHRCFEKHCENVDYPGIV 86
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR+DY+A MN E AY L VEKLL IEIP R + IRV+ SE+ RI SHL+ + T A+D
Sbjct: 87 PYTDRMDYLAGMNSELAYCLTVEKLLDIEIPRRVEFIRVITSELNRIASHLVAIGTYAID 146
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA TP L+ F +RE +M E SG+RM Y GG+ D+P + + + + F
Sbjct: 147 LGAFTPFLFCFRDREHIMNLLEWISGARMLYNYIWIGGLAYDVPADFKKRVAEFVTYFRP 206
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++ LLT N IF +R IG + + A + +SG M+RGSG WDLR++ PY Y E
Sbjct: 207 KAVELYKLLTENEIFVKRTKGIGIMPADVAINFAWSGPMLRGSGVKWDLRRNDPYSVYPE 266
Query: 243 LDFDIPIG-----KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIV 297
LDF++P+ GDC R+LVR +EM ES+KII QC++++ + P + KI
Sbjct: 267 LDFEVPVPDGKFSDVGDCLSRHLVRALEMEESLKIIEQCLDKMPEEQGFDPRALIPKKI- 325
Query: 298 PPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG-GNKPYRCK 356
GEVY E P+GE G Y++SDG KP RCK
Sbjct: 326 -------------------------RPKAGEVYGRAENPRGELGYYIVSDGKSTKPVRCK 360
Query: 357 IRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
R+ + +L AM+ L KG L D+ AI+GS+DIV GEVDR
Sbjct: 361 ARSSCFVNLAAMKDLSKGQLLPDLVAIIGSIDIVLGEVDR 400
>gi|33864314|ref|NP_895874.1| NAD(P)H-quinone oxidoreductase subunit H [Prochlorococcus marinus
str. MIT 9313]
gi|81573088|sp|Q7TUL1|NDHH_PROMM RecName: Full=NAD(P)H-quinone oxidoreductase subunit H; AltName:
Full=NAD(P)H dehydrogenase subunit H; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H;
AltName: Full=NDH-1 subunit H; Short=NDH-H
gi|33641094|emb|CAE22223.1| putative NADH Dehydrogenase subunit [Prochlorococcus marinus str.
MIT 9313]
Length = 394
Score = 371 bits (952), Expect = e-100, Method: Composition-based stats.
Identities = 157/395 (39%), Positives = 223/395 (56%), Gaps = 6/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +NFGP HP+ HGVLRL++ LDGE V +P IG LHRG EK+ E +T + V
Sbjct: 5 ETRTEPMVVNFGPHHPSMHGVLRLVVTLDGEDVVDCEPVIGYLHRGMEKIAENRTSVMFV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R+DY A M E A E+L I +P R IRVL E+ RI +HLL + D
Sbjct: 65 PYVSRMDYAAGMFYEAIVVNAPERLANISVPKRASYIRVLMLELNRIANHLLWLGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSR-MHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E A+G R ++ YFR GGV D+P +E +CD F
Sbjct: 125 VGAQTPFFYIFREREMIYDLWEAATGQRLINNNYFRIGGVACDLPWGWLEKCQDFCDWFG 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R +G + ++A W SG M+R SG WDLRK YECY
Sbjct: 185 PKIDEYEKLITNNPIFRRRIEGLGAIGRDEAINWSLSGPMLRASGVPWDLRKVDHYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+D+ K GDCY RY VR+ EMR+S+KI+RQ + + G + +
Sbjct: 245 DFDWDVAWEKEGDCYARYRVRIEEMRQSLKILRQACDMIPGGPTENLEAQRMAEGKTSPF 304
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ K + +P GE+Y +E+ KGE GV+L + P+R KIRA
Sbjct: 305 MGF-----DYQYVAKKVAPTFKIPNGELYTRLESGKGEIGVFLQGNNDVTPWRFKIRAAD 359
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + + KG ++AD+ AILGS+D++ G VDR
Sbjct: 360 LNNLQILPHILKGAKVADIMAILGSIDVIMGSVDR 394
>gi|300818113|ref|ZP_07098325.1| NADH dehydrogenase, D subunit [Escherichia coli MS 107-1]
gi|300529257|gb|EFK50319.1| NADH dehydrogenase, D subunit [Escherichia coli MS 107-1]
Length = 600
Score = 371 bits (952), Expect = e-100, Method: Composition-based stats.
Identities = 152/395 (38%), Positives = 223/395 (56%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP+AHG R++L+LDGE + P IG HRG EK+ E +++ +
Sbjct: 210 TENEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 269
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 270 PYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQD 329
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 330 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPK 389
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L N I K R+ + ++A WG +G +R +G +D+RK++PY Y
Sbjct: 390 RLASYEKAALQNTILKGRSQGVAAYGAKEALEWGTTGADLRATGIDFDVRKARPYSGYEN 449
Query: 243 LDFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF+IP+ G DCY R ++++ E+R+S++I+ QC+N + GP A P PP +
Sbjct: 450 FDFEIPVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNM----PEGPFKADHPLTTPPPK 505
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + +EA KG YL SDG YR +IR P
Sbjct: 506 ERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPS 565
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YAHLQ + +G ++D+ LGS+D V +VDR
Sbjct: 566 YAHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR 600
>gi|162448795|ref|YP_001611162.1| NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56']
gi|218534363|sp|A9GUZ1|NUOD1_SORC5 RecName: Full=NADH-quinone oxidoreductase subunit D 1; AltName:
Full=NADH dehydrogenase I subunit D 1; AltName:
Full=NDH-1 subunit D 1
gi|161159377|emb|CAN90682.1| NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56']
Length = 404
Score = 371 bits (952), Expect = e-100, Method: Composition-based stats.
Identities = 151/390 (38%), Positives = 228/390 (58%), Gaps = 3/390 (0%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
S +N GP HPA HG +R++LEL GE + + D IG LHRG EK+ E T+ Q PY
Sbjct: 17 SEPMLLNMGPSHPAMHGTVRIVLELSGETINKADVQIGYLHRGFEKMCERGTWSQVFPYV 76
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DRL+YV+PM +ALAVEK+LG+ +P R Q RV+ E+ RI H++ +M++GA
Sbjct: 77 DRLNYVSPMLNNVGFALAVEKMLGVTVPERCQYYRVILGELARICDHMICSGAMSMELGA 136
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
TP L+ RE +E +G+R+ ++ R GG+ + + + + +N
Sbjct: 137 FTPFLYLCRAREIFWEIFEEETGARLTHSFGRVGGMARPPTADFKAMVRVGLARVLALVN 196
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
D L+ NRIF R +G + EDA G++GV++R +G +D+R++ PY Y +F
Sbjct: 197 DAEKLILKNRIFLDRLDGVGQISQEDALALGWTGVVLRATGVPYDVRRANPYMVYDRFEF 256
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
D+P+G GD YDR++ R E+R++ +II Q + ++ GP++ DP+IV P + ++
Sbjct: 257 DVPVGTRGDNYDRFMCRQEEIRQAGRIIEQALEQMPD---EGPINIDDPRIVLPPKEEVY 313
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
++E+ I HFK+ EG VP GE Y+ EA GE G YL+SDG PYR +IR P +A
Sbjct: 314 TTIEATIQHFKIVMEGIKVPAGECYSYTEAGNGELGFYLVSDGSGTPYRVRIRPPCFATT 373
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
Q + L G + DV GSL+++ GE D
Sbjct: 374 QGLSQLITGLMIPDVVPTFGSLNMIGGECD 403
>gi|302185025|ref|ZP_07261698.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas syringae pv. syringae 642]
Length = 593
Score = 371 bits (952), Expect = e-100, Method: Composition-based stats.
Identities = 154/393 (39%), Positives = 226/393 (57%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +P
Sbjct: 205 TNEDYMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMAERQSWHSFIP 264
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ + Y L+VEKL GI++P + +IR++ +E RI SHLL + T DV
Sbjct: 265 YTDRIDYLGGVMNNLPYVLSVEKLAGIKVPEKVDVIRIMMAEFFRITSHLLFLGTYIQDV 324
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+TP + F +R+K E +G R+H A++R GGV D+P + + + D P
Sbjct: 325 GAMTPVFFTFTDRQKAYTVIEAITGFRLHPAWYRIGGVAHDLPRGWEKLVKDFVDWLPKR 384
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L++ + N I K R V + ++A WG +G +R +G +DLRK++PY Y
Sbjct: 385 LDEYTKAALQNSILKGRTVGVAAYNTKEALEWGVTGAGLRSTGCDFDLRKARPYSGYENF 444
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+F++P+ +GD YDR +VR+ EMR+S+KII QC+ + GP A P PP +
Sbjct: 445 EFEVPLAANGDAYDRCMVRVEEMRQSIKIIDQCMRNM----PEGPYKADHPLTTPPPKER 500
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ +E+LI HF + G +P E + +EA KG YL SDGG YR +IR P Y
Sbjct: 501 TLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGGTMSYRTRIRTPSYP 560
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ + + KG +AD+ A LGS+D V +VDR
Sbjct: 561 HLQQIPSVIKGSMVADLIAYLGSIDFVMADVDR 593
>gi|431018|gb|AAA03535.1| NADH dehydrogenase [Escherichia coli]
Length = 407
Score = 371 bits (952), Expect = e-100, Method: Composition-based stats.
Identities = 150/395 (37%), Positives = 224/395 (56%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP+AHG R++L+LDGE + P IG HRG EK+ E +++ +
Sbjct: 17 TENEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 76
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 77 PYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQD 136
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 137 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPK 196
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L N I K R+ + + ++A WG +G +R +G +D+RK++PY Y
Sbjct: 197 RLASYEKAALQNTILKGRSQGVAPMARKEALEWGTTGAGLRATGIDFDVRKARPYSGYEN 256
Query: 243 LDFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF+IP+ G DCY R ++++ E+R+S++I+ QC+N + GP A P PP +
Sbjct: 257 FDFEIPVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNM----PEGPFKADHPLTTPPPK 312
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + +EA KG YL SDG YR ++R P
Sbjct: 313 ERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPS 372
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AHLQ + +G ++D+ LGS+D V +VDR
Sbjct: 373 FAHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR 407
>gi|206578814|ref|YP_002237326.1| NADH-quinone oxidoreductase, C/D subunit [Klebsiella pneumoniae
342]
gi|288934256|ref|YP_003438315.1| NADH dehydrogenase I, D subunit [Klebsiella variicola At-22]
gi|290508459|ref|ZP_06547830.1| nuoC; NADH-quinone oxidoreductase, C/D subunit [Klebsiella sp.
1_1_55]
gi|226737320|sp|B5XNV6|NUOCD_KLEP3 RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|206567872|gb|ACI09648.1| NADH-quinone oxidoreductase, C/D subunit [Klebsiella pneumoniae
342]
gi|288888985|gb|ADC57303.1| NADH dehydrogenase I, D subunit [Klebsiella variicola At-22]
gi|289777853|gb|EFD85850.1| nuoC; NADH-quinone oxidoreductase, C/D subunit [Klebsiella sp.
1_1_55]
Length = 602
Score = 371 bits (952), Expect = e-100, Method: Composition-based stats.
Identities = 149/395 (37%), Positives = 223/395 (56%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +
Sbjct: 212 TDNEDFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 271
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 272 PYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQD 331
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + + P
Sbjct: 332 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLEWMPK 391
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R+V + ++A WG +G +R +G +D+RK +PY Y
Sbjct: 392 RLDSYEKAALRNTILKGRSVGVAAYTAKEALEWGTTGAGLRATGIGFDVRKWRPYSGYEN 451
Query: 243 LDFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF++P G DCY R ++++ E+R+S++I++QC++ + GP A P PP +
Sbjct: 452 FDFEVPTGGGVSDCYTRVMLKVEELRQSLRILQQCLDNM----PEGPFKADHPLTTPPPK 507
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + +EA KG YL SDG YR ++R P
Sbjct: 508 ERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPS 567
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AHLQ + +G ++D+ LGS+D V +VDR
Sbjct: 568 FAHLQQIPSAIRGSLVSDLIVYLGSIDFVMSDVDR 602
>gi|116073987|ref|ZP_01471249.1| NADH dehydrogenase subunit D [Synechococcus sp. RS9916]
gi|116069292|gb|EAU75044.1| NADH dehydrogenase subunit D [Synechococcus sp. RS9916]
Length = 394
Score = 371 bits (952), Expect = e-100, Method: Composition-based stats.
Identities = 156/395 (39%), Positives = 229/395 (57%), Gaps = 6/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +NFGP HP+ HGVLRL++ LDGE V +P IG LHRG EK+ E +T + V
Sbjct: 5 ETRTEPMVVNFGPHHPSMHGVLRLVVTLDGEDVVDCEPVIGYLHRGMEKIAENRTNVMFV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R+DY A M E A E+L I +P R IRVL E+ RI +HLL + D
Sbjct: 65 PYVSRMDYAAGMFYEAIVVNAPERLADIPVPKRASYIRVLMLELNRIANHLLWLGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSR-MHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E A+G R ++ YFR GGV D+P +E +CD F
Sbjct: 125 VGAQTPFFYIFREREMIYDLWEAATGQRLINNNYFRIGGVAADLPYGWLEKCRDFCDWFG 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L++ N IF++R +G + ++A W SG M+R SG WDLRK YECY
Sbjct: 185 PKIDEYEKLISNNPIFRRRIEGLGAISRDEAINWSLSGPMLRASGVPWDLRKVDHYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+++ K GDC+ RY VR+ EMR+S+KI+RQ + + G GP + + + +
Sbjct: 245 DFDWNVAWEKEGDCFARYRVRIEEMRQSLKILRQACDMIPG----GPTENLEARRMAEGK 300
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ + K + +P GE+Y +E+ KGE GV++ + P+R KIRA
Sbjct: 301 KSEFAGFD-YQYVAKKVAPTFKIPNGELYTRLESGKGEIGVFIQGNNDVTPWRFKIRAAD 359
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + + KGH++AD+ AILGS+D++ G VDR
Sbjct: 360 SNNLQILPHILKGHKVADIMAILGSIDVIMGSVDR 394
>gi|330810465|ref|YP_004354927.1| NADH-quinone oxidoreductase subunit C/D [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|327378573|gb|AEA69923.1| NADH-quinone oxidoreductase subunit C/D [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 593
Score = 371 bits (952), Expect = e-100, Method: Composition-based stats.
Identities = 152/390 (38%), Positives = 226/390 (57%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +PY D
Sbjct: 208 DYMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMAERQSWHSFIPYTD 267
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+DY+ + Y L+VEKL GI++P + +IR++ +E RI SHLL + T DVGA+
Sbjct: 268 RIDYLGGVMNNLPYVLSVEKLAGIKVPEKVDVIRIMMAEFFRITSHLLFLGTYIQDVGAM 327
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP + F +R+K E +G R+H A++R GGV D+P + + + + P L++
Sbjct: 328 TPVFFTFTDRQKAYTVIEAITGFRLHPAWYRIGGVAHDLPRGWEKLVKDFVEWMPKRLDE 387
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ N I K R + + ++A WG +G +R +G +DLRK++PY Y +F+
Sbjct: 388 YTKAALQNSILKGRTIGVAAYNTKEALEWGVTGAGLRSTGCDFDLRKARPYSGYENFEFE 447
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+P+ +GD YDR +VR+ EMR+S+KII QC+ + GP A P PP + +
Sbjct: 448 VPLAANGDAYDRCMVRVEEMRQSIKIIDQCMRNM----PEGPYKADHPLTTPPPKERTLQ 503
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+E+LI HF + G +P E + +EA KG YL SDGG YR +IR P Y HLQ
Sbjct: 504 HIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGGTMSYRTRIRTPSYPHLQ 563
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + KG +AD+ A LGS+D V +VDR
Sbjct: 564 QIPSVIKGSMVADLIAYLGSIDFVMADVDR 593
>gi|293395172|ref|ZP_06639458.1| NADH dehydrogenase I subunit D [Serratia odorifera DSM 4582]
gi|291422349|gb|EFE95592.1| NADH dehydrogenase I subunit D [Serratia odorifera DSM 4582]
Length = 598
Score = 370 bits (951), Expect = e-100, Method: Composition-based stats.
Identities = 152/395 (38%), Positives = 228/395 (57%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +
Sbjct: 208 TENEDFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 267
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI++P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 268 PYTDRIEYLGGCVNEMPYVLAVEKLAGIKVPERVDVIRVMLSELFRINSHLLYISTFIQD 327
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + + P
Sbjct: 328 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLEWMPK 387
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R+V + + ++A WG +G +R +G +D+RK +PY Y
Sbjct: 388 RLDSYVKAALQNTILKGRSVGVASYNAKEALEWGVTGAGLRATGVEFDVRKWRPYSGYEN 447
Query: 243 LDFDIPIGK-HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DFD+PIG + DCY R ++++ E+R+S++I+ QC+N + GP A P PP +
Sbjct: 448 FDFDVPIGDGNSDCYTRVMLKVEELRQSLRILEQCLNNM----PEGPFKADHPLTTPPPK 503
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + +EA KG YL SDG YR ++R P
Sbjct: 504 ERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPS 563
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AHLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 564 FAHLQQIPAVIRGSLVSDLIVYLGSIDFVMSDVDR 598
>gi|289625428|ref|ZP_06458382.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas syringae pv. aesculi str. NCPPB3681]
gi|289649289|ref|ZP_06480632.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas syringae pv. aesculi str. 2250]
gi|289679198|ref|ZP_06500088.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas syringae pv. syringae FF5]
gi|298487550|ref|ZP_07005592.1| NADH-ubiquinone oxidoreductase chain C / NADH-ubiquinone
oxidoreductase chain D [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|298157934|gb|EFH99012.1| NADH-ubiquinone oxidoreductase chain C / NADH-ubiquinone
oxidoreductase chain D [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|330866836|gb|EGH01545.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas syringae pv. aesculi str. 0893_23]
gi|330954561|gb|EGH54821.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas syringae Cit 7]
gi|330981369|gb|EGH79472.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas syringae pv. aptata str. DSM 50252]
Length = 593
Score = 370 bits (951), Expect = e-100, Method: Composition-based stats.
Identities = 154/390 (39%), Positives = 226/390 (57%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +PY D
Sbjct: 208 DYMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMAERQSWHSFIPYTD 267
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+DY+ + Y L+VEKL GI++P + +IR++ +E RI SHLL + T DVGA+
Sbjct: 268 RIDYLGGVMNNLPYVLSVEKLAGIKVPEKVDVIRIMMAEFFRITSHLLFLGTYIQDVGAM 327
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP + F +R+K E +G R+H A++R GGV D+P + + + D P L++
Sbjct: 328 TPVFFTFTDRQKAYTVIEAITGFRLHPAWYRIGGVAHDLPRGWEKLVKDFVDWLPKRLDE 387
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ N I K R V + ++A WG +G +R +G +DLRK++PY Y +F+
Sbjct: 388 YTKAALQNSILKGRTVGVAAYNTKEALEWGVTGAGLRSTGCDFDLRKARPYSGYENFEFE 447
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+P+ +GD YDR +VR+ EMR+S+KII QC+ + GP A P PP + +
Sbjct: 448 VPLAANGDAYDRCMVRVEEMRQSIKIIDQCMRNM----PEGPYKADHPLTTPPPKERTLQ 503
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+E+LI HF + G +P E + +EA KG YL SDGG YR +IR P Y HLQ
Sbjct: 504 HIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGGTMSYRTRIRTPSYPHLQ 563
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + KG +AD+ A LGS+D V +VDR
Sbjct: 564 QIPSVIKGSMVADLIAYLGSIDFVMADVDR 593
>gi|257485441|ref|ZP_05639482.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas syringae pv. tabaci ATCC 11528]
gi|330987944|gb|EGH86047.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas syringae pv. lachrymans str. M301315]
gi|331010725|gb|EGH90781.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas syringae pv. tabaci ATCC 11528]
Length = 593
Score = 370 bits (951), Expect = e-100, Method: Composition-based stats.
Identities = 154/390 (39%), Positives = 226/390 (57%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +PY D
Sbjct: 208 DYMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMAERQSWHSFIPYTD 267
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+DY+ + Y L+VEKL GI++P + +IR++ +E RI SHLL + T DVGA+
Sbjct: 268 RIDYLGGVMNNLPYVLSVEKLAGIKVPEKVDVIRIMMAEFFRITSHLLFLGTYIQDVGAM 327
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP + F +R+K E +G R+H A++R GGV D+P + + + D P L++
Sbjct: 328 TPVFFTFTDRQKAYTVIEAITGFRLHPAWYRIGGVAHDLPRGWEKLVKDFVDWLPKRLDE 387
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ N I K R V + ++A WG +G +R +G +DLRK++PY Y +F+
Sbjct: 388 YTKAALQNSILKGRTVGVAAYNTKEALEWGVTGAGLRSTGCDFDLRKARPYSGYENFEFE 447
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+P+ +GD YDR +VR+ EMR+S+KII QC+ + GP A P PP + +
Sbjct: 448 VPLAANGDAYDRCMVRVEEMRQSIKIIDQCMRNM----PEGPYKADHPLTTPPPKERTLQ 503
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+E+LI HF + G +P E + +EA KG YL SDGG YR +IR P Y HLQ
Sbjct: 504 HIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGGTMSYRTRIRTPSYPHLQ 563
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + KG +AD+ A LGS+D V +VDR
Sbjct: 564 QIPSVIKGSMVADLIAYLGSIDFVMADVDR 593
>gi|94676822|ref|YP_588823.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Baumannia
cicadellinicola str. Hc (Homalodisca coagulata)]
gi|218528035|sp|Q1LT91|NUOCD_BAUCH RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|94219972|gb|ABF14131.1| NADH-quinone oxidoreductase chain C/D [Baumannia cicadellinicola
str. Hc (Homalodisca coagulata)]
Length = 595
Score = 370 bits (951), Expect = e-100, Method: Composition-based stats.
Identities = 148/393 (37%), Positives = 225/393 (57%), Gaps = 5/393 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K +NFGP HP+AHG R++L+LDGE + P IG HRG EK+ E +++ +PY
Sbjct: 207 KDDFMFLNFGPNHPSAHGAFRIVLQLDGEEIVDCIPDIGYHHRGVEKMSERQSWHSYIPY 266
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR++Y+ E Y LAVEKL GI +P R +IR++ SE+ RI SHLL ++T DVG
Sbjct: 267 TDRVEYLGGCVNEMPYVLAVEKLAGIVVPDRVNVIRIMLSELFRINSHLLYISTYIQDVG 326
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
+TP F +R+K+ E +G+RMH A+FR GGV D+P + D P+ L
Sbjct: 327 GMTPIFLAFTDRQKIYNVVEAITGARMHPAWFRIGGVAHDLPHGWNMLLKELLDWLPNRL 386
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ N I + R+ I + ++A WG +G +R +G +D+RK +PY Y +
Sbjct: 387 EHYVKVALENSILRSRSEGIASYSAKEALEWGVTGAALRATGINFDVRKWRPYSGYDNFE 446
Query: 245 FDIPIGK-HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
F+IP+G DCY R ++++ E+R+S++I++QC++ + GP A P PP +
Sbjct: 447 FEIPVGNGISDCYSRVMLKVEEIRQSIRILKQCLHNMPA----GPFKADHPLTTPPPKER 502
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ +E+LI HF + G +P E + +EA KG YL SDG YR +IR P +
Sbjct: 503 TLQHIETLISHFLQVSWGPIIPANESFQMIEATKGINSYYLTSDGNTMSYRTRIRTPSFP 562
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 563 HLQQIPSVIRGSLISDLIVYLGSIDFVMSDVDR 595
>gi|157412529|ref|YP_001483395.1| NAD(P)H-quinone oxidoreductase subunit H [Prochlorococcus marinus
str. MIT 9215]
gi|254527007|ref|ZP_05139059.1| NADH dehydrogenase i domain protein [Prochlorococcus marinus str.
MIT 9202]
gi|229891149|sp|A8G2H8|NDHH_PROM2 RecName: Full=NAD(P)H-quinone oxidoreductase subunit H; AltName:
Full=NAD(P)H dehydrogenase subunit H; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H;
AltName: Full=NDH-1 subunit H; Short=NDH-H
gi|157387104|gb|ABV49809.1| putative NADH dehydrogenase subunit [Prochlorococcus marinus str.
MIT 9215]
gi|221538431|gb|EEE40884.1| NADH dehydrogenase i domain protein [Prochlorococcus marinus str.
MIT 9202]
Length = 395
Score = 370 bits (951), Expect = e-100, Method: Composition-based stats.
Identities = 157/395 (39%), Positives = 226/395 (57%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +NFGP HP+ HGVLRL++ LDGE V +P IG LHRG EK+ E +T + V
Sbjct: 5 ETRTEPMVVNFGPHHPSMHGVLRLVVTLDGENVIDCEPVIGYLHRGMEKIAENRTNVMYV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R+DY A M E A E+L I +P R IRVL E+ RI +HLL + D
Sbjct: 65 PYVSRMDYAAGMFYEAIVVNAPERLANIPVPKRASYIRVLMLELNRIANHLLWLGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSR-MHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E A+G R ++ +FR GGV D+P +E +CD F
Sbjct: 125 VGAQTPFFYIFREREMIYDLWEAATGQRLINNNFFRIGGVACDLPYGWLEKCIDFCDWFG 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R +GT++ + A W SG M+R SG +WDLRK YECY
Sbjct: 185 PKIDEYEKLITNNPIFRKRIEGLGTIQRDQAINWSLSGPMLRASGVSWDLRKVDSYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+ I K GDCY RY VR+ EMR+S+ IIRQ + G + K+
Sbjct: 245 DFDWQIASEKEGDCYARYRVRVEEMRQSLSIIRQACKMIPGGPTEN--LEAQRMATEDKK 302
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+++ + K + +P GE+Y +E+ KGE GV++ + P+R KIRA
Sbjct: 303 SEIFG--IDYQYVAKKVAPTFKIPNGELYTRLESGKGEIGVFIQGNNEVTPWRFKIRAAD 360
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + + KG ++AD+ AILGS+D++ G VDR
Sbjct: 361 LNNLQILPHILKGAKIADIMAILGSIDVIMGSVDR 395
>gi|293191719|ref|ZP_06609276.1| NADH dehydrogenase, D subunit [Actinomyces odontolyticus F0309]
gi|292820491|gb|EFF79473.1| NADH dehydrogenase, D subunit [Actinomyces odontolyticus F0309]
Length = 448
Score = 370 bits (951), Expect = e-100, Method: Composition-based stats.
Identities = 181/414 (43%), Positives = 238/414 (57%), Gaps = 19/414 (4%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
++ S +N GP HPA HGVLRLILELDGE V G LH G EK +E +T+ Q
Sbjct: 36 IEAITSERIVVNLGPVHPATHGVLRLILELDGEKVRETRVDTGYLHTGIEKNMEYRTWAQ 95
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTT 118
V Y R+DYVAP QE AY L VEKLLGIE IP R LIR+L E+ RI SHL+ + +
Sbjct: 96 GVAYCTRMDYVAPFFQEAAYCLGVEKLLGIEEDIPERASLIRILMMELCRIASHLVAIGS 155
Query: 119 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
++GA T GF RE+++ +ER +G RM+ Y RPGGV QDI + I
Sbjct: 156 TGNEMGATTIMTIGFRAREEILRIFERITGLRMNHEYIRPGGVVQDIGEGTADYIRDRLR 215
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
+ ++ D+L N IFK+R ++ + L G +G +R +G DLRKSQPY
Sbjct: 216 RARKDIGELQDILVENPIFKKRLCDVAVMPLSGLMALGTTGPGVRAAGLPLDLRKSQPYC 275
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
Y +FD+P D Y+R ++R E ES++II Q + +L + + P +DP+I
Sbjct: 276 GYENFEFDVPTRDKSDVYNRTMIRFDECYESMRIIWQVLAKL-DQCEGAPTMVADPEIAW 334
Query: 299 PK----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGV 342
P R M SMESLIHHFKL TEG+HVP G+VY VE KG GV
Sbjct: 335 PARLAVGTDGQGNSAEHVREIMGESMESLIHHFKLVTEGFHVPAGQVYQTVEHAKGILGV 394
Query: 343 YLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L+SDGG +P+R R P YA+LQA+ + +G QLADV L ++D V G VDR
Sbjct: 395 HLVSDGGTRPFRAHFRDPSYANLQALAMMTEGGQLADVVVALAAIDPVLGGVDR 448
>gi|311086471|gb|ADP66552.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Buchnera
aphidicola str. TLW03 (Acyrthosiphon pisum)]
Length = 515
Score = 370 bits (951), Expect = e-100, Method: Composition-based stats.
Identities = 143/391 (36%), Positives = 222/391 (56%), Gaps = 5/391 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GP HP+AHG R++L+LDGE + P IG HRG EK+ E +++ +PY D
Sbjct: 129 EFMFLNLGPNHPSAHGAFRIVLQLDGENIVDCVPDIGYHHRGAEKMAERQSWHSYIPYTD 188
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R++Y+ E Y LAVEKL I +P + ++IRV+ SE+ RI SHLL ++T DVG +
Sbjct: 189 RIEYLGGCVNELPYVLAVEKLANISVPEKAEVIRVMMSELFRINSHLLYISTFIQDVGCM 248
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP + F +R+K+ E +G+RMH A+FR GGV D+P + + D P L
Sbjct: 249 TPVFFAFTDRQKIYDLIEAITGARMHPAWFRIGGVANDLPQGWNILLKEFLDWMPKRLKY 308
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ N I R+ I ++A WG +G +R +G +D+RK +PY Y F+
Sbjct: 309 YINTALKNSILIHRSKGIAEYNKKEALQWGVTGAGLRATGLNFDVRKWRPYSGYQNYTFE 368
Query: 247 IPIGK-HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+P+G DCY R ++++ E+ +S+ I++QC+ + GP + D PP + +
Sbjct: 369 VPVGSGISDCYSRVMIKVEEIYQSLFILKQCLCNM----PSGPFKSEDSLTTPPSKECVL 424
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
+++E++I HF + G +P E + +EA KG YLISDGG YR +IR P + HL
Sbjct: 425 QNIETMITHFLQVSWGPVIPENESFQMIEATKGINSYYLISDGGTMSYRTRIRTPSFPHL 484
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Q + + +G ++D+ LGS+D V +VDR
Sbjct: 485 QQIPSVIRGSLISDLIVYLGSIDFVMSDVDR 515
>gi|71735882|ref|YP_275281.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas syringae pv. phaseolicola 1448A]
gi|123635949|sp|Q48H52|NUOCD_PSE14 RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|71556435|gb|AAZ35646.1| NADH-quinone oxidoreductase, C/D subunit [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 593
Score = 370 bits (951), Expect = e-100, Method: Composition-based stats.
Identities = 154/390 (39%), Positives = 226/390 (57%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +PY D
Sbjct: 208 DYMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMAERQSWHSFIPYTD 267
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+DY+ + Y L+VEKL GI++P + +IR++ +E RI SHLL + T DVGA+
Sbjct: 268 RIDYLGGVMNNLPYVLSVEKLAGIKVPEKVDVIRIMMAEFFRITSHLLFLGTYIQDVGAM 327
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP + F +R+K E +G R+H A++R GGV D+P + + + D P L++
Sbjct: 328 TPVFFTFTDRQKAYTVIEAITGFRLHPAWYRIGGVAHDLPRGWEKLVKDFVDWLPKRLDE 387
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ N I K R V + ++A WG +G +R +G +DLRK++PY Y +F+
Sbjct: 388 YTKAALQNSILKGRTVGVAAYNTKEALEWGVTGAGLRSTGCDFDLRKARPYSGYENFEFE 447
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+P+ +GD YDR +VR+ EMR+S+KII QC+ + GP A P PP + +
Sbjct: 448 VPLAANGDAYDRCMVRVEEMRQSIKIIDQCMRNM----PEGPYKADHPLTTPPPKERTLQ 503
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+E+LI HF + G +P E + +EA KG YL SDGG YR +IR P Y HLQ
Sbjct: 504 HIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGGTMSYRTRIRTPSYPHLQ 563
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + KG +AD+ A LGS+D V +VDR
Sbjct: 564 QIPSVIKGSMVADLIAYLGSIDFVMADVDR 593
>gi|317048937|ref|YP_004116585.1| NADH dehydrogenase I subunit D [Pantoea sp. At-9b]
gi|316950554|gb|ADU70029.1| NADH dehydrogenase I, D subunit [Pantoea sp. At-9b]
Length = 599
Score = 370 bits (951), Expect = e-100, Method: Composition-based stats.
Identities = 147/395 (37%), Positives = 220/395 (55%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+N GP HP+AHG R+IL+LDGE + P +G HRG EK+ E +++ +
Sbjct: 209 TANEDFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDVGYHHRGAEKMGERQSWHSYI 268
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 269 PYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQD 328
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 329 VGAMTPVFFAFTDRQKIYDVVEAITGFRMHPAWFRIGGVAHDLPKGWERLLRDFLDWMPK 388
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L + NR+ R+ + +++A WG +G +R +G +D+RK +PY Y
Sbjct: 389 RLKEYDKAALRNRVLMGRSQGVAAYNMDEALAWGTTGAGLRATGLDFDVRKWRPYSGYEH 448
Query: 243 LDFDIPIGK-HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF+IP+G D Y R +++M EM +S++I+ QC+ + GP A P PP +
Sbjct: 449 FDFEIPVGAGISDAYTRVMLKMEEMWQSLRILEQCLKNM----PEGPFKADHPLTTPPPK 504
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + +EA KG YL SDG YR ++R P
Sbjct: 505 ERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPS 564
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ HLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 565 FPHLQQIPSVIRGSLVSDLIVYLGSIDFVMSDVDR 599
>gi|126695530|ref|YP_001090416.1| NAD(P)H-quinone oxidoreductase subunit H [Prochlorococcus marinus
str. MIT 9301]
gi|229891147|sp|A3PAP0|NDHH_PROM0 RecName: Full=NAD(P)H-quinone oxidoreductase subunit H; AltName:
Full=NAD(P)H dehydrogenase subunit H; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H;
AltName: Full=NDH-1 subunit H; Short=NDH-H
gi|126542573|gb|ABO16815.1| putative NADH dehydrogenase subunit [Prochlorococcus marinus str.
MIT 9301]
Length = 395
Score = 370 bits (951), Expect = e-100, Method: Composition-based stats.
Identities = 157/395 (39%), Positives = 226/395 (57%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +NFGP HP+ HGVLRL++ LDGE V +P IG LHRG EK+ E +T + V
Sbjct: 5 ETRTEPMVVNFGPHHPSMHGVLRLVVTLDGENVIDCEPVIGYLHRGMEKIAENRTNVMYV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R+DY A M E A E+L I +P R IRVL E+ RI +HLL + D
Sbjct: 65 PYVSRMDYAAGMFYEAIVVNAPERLANIPVPKRASYIRVLMLELNRIANHLLWLGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSR-MHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E A+G R ++ +FR GGV D+P +E +CD F
Sbjct: 125 VGAQTPFFYIFREREMIYDLWEAATGQRLINNNFFRIGGVACDLPYGWLEKCIDFCDWFG 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R +GT++ + A W SG M+R SG +WDLRK YECY
Sbjct: 185 PKIDEYEKLITNNPIFRKRIEGLGTIQRDQAINWSLSGPMLRASGVSWDLRKVDSYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+ I K GDCY RY VR+ EMR+S+ IIRQ + G + K+
Sbjct: 245 DFDWQIASEKEGDCYARYRVRVEEMRQSLSIIRQACKMIPGGPTEN--LEAQRMSTEDKK 302
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+++ + K + +P GE+Y +E+ KGE GV++ + P+R KIRA
Sbjct: 303 SEIFG--IDYQYVAKKVAPTFKIPNGELYTRLESGKGEIGVFIQGNNEVTPWRFKIRAAD 360
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + + KG ++AD+ AILGS+D++ G VDR
Sbjct: 361 LNNLQILPHILKGAKIADIMAILGSIDVIMGSVDR 395
>gi|163751848|ref|ZP_02159063.1| NADH dehydrogenase I, C/D subunits [Shewanella benthica KT99]
gi|161328264|gb|EDP99426.1| NADH dehydrogenase I, C/D subunits [Shewanella benthica KT99]
Length = 596
Score = 370 bits (951), Expect = e-100, Method: Composition-based stats.
Identities = 167/398 (41%), Positives = 232/398 (58%), Gaps = 6/398 (1%)
Query: 1 MDKKKSRS--FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTF 58
MD+ + + +N GP HP+ HGV R+ L+LDGE + P IG HRG EK+ E +T+
Sbjct: 203 MDESSADNDYLFLNLGPNHPSVHGVFRIALQLDGEQIINSVPDIGYHHRGAEKIAERQTW 262
Query: 59 LQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTT 118
+PY DR+DY+ + Y LA+E+L I + R + IRV+ +E RILSH+L T
Sbjct: 263 HGFIPYTDRIDYLGGVMNNFPYILAIEQLADIRVSERVECIRVMLAECFRILSHMLFFGT 322
Query: 119 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
A DVG L+P + F +REKL E +G+RMH ++FR GGV QD+P + + D
Sbjct: 323 FAQDVGQLSPIFYLFIDREKLFSIIEAITGARMHPSWFRIGGVAQDLPQGWHIMMQEFVD 382
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
FP+ L++ ++ N I K R V IG + A W SGV IR +G WDLRKS+PY
Sbjct: 383 YFPAKLDEYEVMVMQNSILKNRAVGIGKYDTQQAIEWNISGVGIRATGLEWDLRKSRPYS 442
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
Y FDIPI +GD YDR +R+ EMR+S+KII+QC++ + G A P P
Sbjct: 443 GYENYQFDIPIAHNGDAYDRCQLRVDEMRQSIKIIQQCIDHM----PQGNYKADHPLTTP 498
Query: 299 PKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
P+ K+ +++LI HF + G +P GE AVEA KG LISDG + YR +IR
Sbjct: 499 PRSDRSKQDIDTLIQHFMNVSWGGVMPKGESSFAVEATKGINAYTLISDGTSSSYRTRIR 558
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
P + HLQ + + KG +AD+ IL S+D V +VDR
Sbjct: 559 TPSFPHLQMIPTMAKGLMVADLIVILASIDFVMADVDR 596
>gi|156742066|ref|YP_001432195.1| NADH dehydrogenase (quinone) [Roseiflexus castenholzii DSM 13941]
gi|218534368|sp|A7NL07|NUOD2_ROSCS RecName: Full=NADH-quinone oxidoreductase subunit D 2; AltName:
Full=NADH dehydrogenase I subunit D 2; AltName:
Full=NDH-1 subunit D 2
gi|156233394|gb|ABU58177.1| NADH dehydrogenase (quinone) [Roseiflexus castenholzii DSM 13941]
Length = 374
Score = 370 bits (951), Expect = e-100, Method: Composition-based stats.
Identities = 169/393 (43%), Positives = 239/393 (60%), Gaps = 22/393 (5%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+++ IN GPQHP+ HGV R+I+ +DGE + + P G LHR E+L E T++Q++PY
Sbjct: 3 QTQELQINIGPQHPSTHGVFRMIVTVDGETIIDLKPVFGYLHRNHEQLAEVSTYIQSMPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDY M HA ALAVEKL GI +P R + IRVL E+ RIL+H V D+G
Sbjct: 63 TDRLDYFNSMANNHALALAVEKLAGISVPQRAEYIRVLMVELTRILNHASAVGFLLNDMG 122
Query: 125 AL-TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
A TP ++G EREK++ +E ASG+RM YFR GGV +D+PPE + + PS
Sbjct: 123 AWQTPLMFGMREREKILDLFEMASGARMMCNYFRFGGVWRDLPPEFIPQLKELMQGLPSF 182
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
++ LL N I R VN+G + E A + +G ++R SG +D+R+++PY Y +L
Sbjct: 183 FDEFERLLRENEILLSRTVNVGILPKEVAVSYSVTGPVLRASGIPYDVRRAEPYSVYGDL 242
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DFDIPIG GD YDR+L+R+ EMR+S +I++Q + RL + P A+
Sbjct: 243 DFDIPIGSVGDVYDRFLIRIEEMRQSYRILQQVIERLPDTTGGH---------INPAMAN 293
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ + + P G+ YA +E+PKGE G YL+SDG +PYR K+RAP +
Sbjct: 294 IGKQ------------KALRPPPGDAYARIESPKGELGFYLVSDGSERPYRYKVRAPSFI 341
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L + +C+GH++ADV ILGS+DIV GEVDR
Sbjct: 342 NLTPLGDMCRGHKVADVVVILGSIDIVMGEVDR 374
>gi|320323790|gb|EFW79874.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas syringae pv. glycinea str. B076]
gi|320327929|gb|EFW83934.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas syringae pv. glycinea str. race 4]
Length = 593
Score = 370 bits (950), Expect = e-100, Method: Composition-based stats.
Identities = 154/390 (39%), Positives = 226/390 (57%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +PY D
Sbjct: 208 DYMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMAERQSWHSFIPYTD 267
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+DY+ + Y L+VEKL GI++P + +IR++ +E RI SHLL + T DVGA+
Sbjct: 268 RIDYLGGVMNNLPYVLSVEKLAGIKVPEKVDVIRIMMAEFFRITSHLLFLGTYIQDVGAM 327
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP + F +R+K E +G R+H A++R GGV D+P + + + D P L++
Sbjct: 328 TPVFFTFTDRQKAYTVIEAITGFRLHPAWYRIGGVAHDLPRGWEKLVKDFVDWLPKRLDE 387
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ N I K R V + ++A WG +G +R +G +DLRK++PY Y +F+
Sbjct: 388 YTKAALQNSILKGRTVGVAAYNTKEALEWGVTGAGLRSTGCDFDLRKARPYSGYENFEFE 447
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+P+ +GD YDR +VR+ EMR+S+KII QC+ + GP A P PP + +
Sbjct: 448 VPLAANGDAYDRCMVRVEEMRQSIKIIDQCMRNM----PEGPYKADHPLTTPPPKERTLQ 503
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+E+LI HF + G +P E + +EA KG YL SDGG YR +IR P Y HLQ
Sbjct: 504 HIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGGTMSYRTRIRTPSYPHLQ 563
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + KG +AD+ A LGS+D V +VDR
Sbjct: 564 QIPSVIKGSMVADLIAYLGSIDFVMADVDR 593
>gi|154508640|ref|ZP_02044282.1| hypothetical protein ACTODO_01141 [Actinomyces odontolyticus ATCC
17982]
gi|153798274|gb|EDN80694.1| hypothetical protein ACTODO_01141 [Actinomyces odontolyticus ATCC
17982]
Length = 448
Score = 370 bits (950), Expect = e-100, Method: Composition-based stats.
Identities = 181/414 (43%), Positives = 238/414 (57%), Gaps = 19/414 (4%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
++ S +N GP HPA HGVLRLILELDGE V G LH G EK +E +T+ Q
Sbjct: 36 IEAITSERIVVNLGPVHPATHGVLRLILELDGEKVRETRVDTGYLHTGIEKNMEYRTWAQ 95
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTT 118
V Y R+DYVAP QE AY L VEKLLGIE IP R LIR+L E+ RI SHL+ + +
Sbjct: 96 GVAYCTRMDYVAPFFQEAAYCLGVEKLLGIEEDIPERASLIRILMMELCRIASHLVAIGS 155
Query: 119 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
++GA T GF RE+++ +ER +G RM+ Y RPGGV QDI + I
Sbjct: 156 TGNEMGATTIMTIGFRAREEILRIFERITGLRMNHEYIRPGGVVQDIGEGTSDYIRDRLR 215
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
+ ++ D+L N IFK+R ++ + L G +G +R +G DLRKSQPY
Sbjct: 216 RARKDIGELQDILVENPIFKKRLCDVAVMPLSGLMALGTTGPGVRAAGLPLDLRKSQPYC 275
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
Y +FD+P D Y+R ++R E ES++II Q + +L + + P +DP+I
Sbjct: 276 GYENFEFDVPTRDKSDVYNRTMIRFDECYESMRIIWQVLAKL-DQCEGAPTMVADPEIAW 334
Query: 299 PK----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGV 342
P R M SMESLIHHFKL TEG+HVP G+VY VE KG GV
Sbjct: 335 PARLAVGTDGQGNSAEHVREIMGESMESLIHHFKLVTEGFHVPAGQVYQTVEHAKGILGV 394
Query: 343 YLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L+SDGG +P+R R P YA+LQA+ + +G QLADV L ++D V G VDR
Sbjct: 395 HLVSDGGTRPFRAHFRDPSYANLQALAMMTEGGQLADVVVALAAIDPVLGGVDR 448
>gi|304398214|ref|ZP_07380088.1| NADH dehydrogenase I, D subunit [Pantoea sp. aB]
gi|304354080|gb|EFM18453.1| NADH dehydrogenase I, D subunit [Pantoea sp. aB]
Length = 599
Score = 370 bits (950), Expect = e-100, Method: Composition-based stats.
Identities = 149/395 (37%), Positives = 219/395 (55%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +
Sbjct: 209 TTNEDFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 268
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 269 PYTDRIEYLGGCVNEMPYVLAVEKLAGIVVPDRVNVIRVMLSELFRINSHLLYISTFIQD 328
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 329 VGAMTPVFFAFTDRQKIYDVVEAITGFRMHPAWFRIGGVAHDLPRGWERLLRDFLDWMPK 388
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L + N + R+ + +E+A WG +G +R +G +D+RK +PY Y
Sbjct: 389 RLKEYDKAALRNTVLIGRSKGVAAYNMEEALAWGTTGAGLRATGLDFDVRKWRPYSGYEN 448
Query: 243 LDFDIPIGK-HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF+IP+G D Y R ++M EM +S++I+ QC+N + GP A P PP +
Sbjct: 449 FDFEIPVGDGVSDAYSRVQLKMEEMWQSLRILEQCLNNM----PEGPFKADHPLTTPPPK 504
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + +EA KG YL SDG YR ++R P
Sbjct: 505 ERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPS 564
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ HLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 565 FPHLQQIPSVIRGSLVSDLIVYLGSIDFVMSDVDR 599
>gi|148657101|ref|YP_001277306.1| NADH dehydrogenase (quinone) [Roseiflexus sp. RS-1]
gi|218534359|sp|A5UXK3|NUOD1_ROSS1 RecName: Full=NADH-quinone oxidoreductase subunit D 1; AltName:
Full=NADH dehydrogenase I subunit D 1; AltName:
Full=NDH-1 subunit D 1
gi|148569211|gb|ABQ91356.1| NADH dehydrogenase (quinone) [Roseiflexus sp. RS-1]
Length = 374
Score = 370 bits (950), Expect = e-100, Method: Composition-based stats.
Identities = 168/392 (42%), Positives = 238/392 (60%), Gaps = 22/392 (5%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+++ IN GPQHP+ HGV R+I+ +DGE + + P G LHR E+L E T++Q++PY
Sbjct: 3 QTQELQINIGPQHPSTHGVFRMIVTVDGETIVDLKPVFGYLHRNHEQLAEVSTYIQSMPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDY M HA ALAVEKL GI +P R + IRVL E+ RIL+H V D+G
Sbjct: 63 TDRLDYFNSMANNHALALAVEKLAGISVPQRAEYIRVLMVELTRILNHASAVGFLLNDMG 122
Query: 125 AL-TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
A TP ++G EREK++ +E ASG+RM YFR GGV +D+PPE + + PS
Sbjct: 123 AWQTPLMFGMREREKILDLFEMASGARMMCNYFRFGGVWRDLPPEFIPQLKELMQGLPSF 182
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
++ LL N I R +N+G + E A + +G ++R SG +D+R+++PY Y EL
Sbjct: 183 FDEFERLLKENEILLSRTINVGVLPKEVAVSYSVTGPVLRASGIPYDVRRAEPYSVYDEL 242
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DFDIPIG GD YDR+L+R+ EMR+S +I++Q + RL + P A+
Sbjct: 243 DFDIPIGSVGDVYDRFLIRIEEMRQSYRILQQVIERLPDTTGGH---------INPAMAN 293
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ + + P G+ YA +E+PKGE G YL+SDG +PYR K+RAP +
Sbjct: 294 IGKQ------------KALRPPPGDAYARIESPKGELGFYLVSDGSERPYRYKVRAPSFI 341
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+L + +C+GH++ADV ILGS+DIV GEVD
Sbjct: 342 NLTPLGDMCRGHKVADVVVILGSIDIVMGEVD 373
>gi|209765088|gb|ACI80856.1| NADH dehydrogenase I chain C/D [Escherichia coli]
gi|320646501|gb|EFX15420.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli O157:H- str. 493-89]
gi|320651598|gb|EFX19978.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli O157:H- str. H 2687]
Length = 600
Score = 370 bits (950), Expect = e-100, Method: Composition-based stats.
Identities = 151/395 (38%), Positives = 223/395 (56%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP+AHG R++L+LDGE + P IG HRG EK+ E +++ +
Sbjct: 210 TENEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 269
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 270 PYTDRIEYLGGCVNEMPYVLAVEKLAGITVPARVNVIRVMLSELFRINSHLLYISTFIQD 329
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 330 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPK 389
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L N I K R+ + ++A WG +G +R +G +D+RK++PY Y
Sbjct: 390 RLASYEKAALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYEN 449
Query: 243 LDFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF+IP+ G DCY R ++++ E+R+S++I+ QC+N + GP A P PP +
Sbjct: 450 FDFEIPVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNM----PEGPFKADHPLTTPPPK 505
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +++LI HF + G +P E + +EA KG YL SDG YR +IR P
Sbjct: 506 ERTLQHIDTLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPS 565
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YAHLQ + +G ++D+ LGS+D V +VDR
Sbjct: 566 YAHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR 600
>gi|262280144|ref|ZP_06057929.1| NADH:ubiquinone oxidoreductase 49 kDa subunit 7 [Acinetobacter
calcoaceticus RUH2202]
gi|262260495|gb|EEY79228.1| NADH:ubiquinone oxidoreductase 49 kDa subunit 7 [Acinetobacter
calcoaceticus RUH2202]
Length = 595
Score = 370 bits (950), Expect = e-100, Method: Composition-based stats.
Identities = 147/393 (37%), Positives = 214/393 (54%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+N GP HP+AHG R++L+LDGE V+ P IG HRG EK+ E +T+ +P
Sbjct: 207 ADEDFMFLNLGPNHPSAHGAFRVVLQLDGEEVKDCVPDIGYHHRGVEKMAERQTWHSFIP 266
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ Q Y +AVE++ GI++P R Q+IRV+ +E+ RI +HLL T D
Sbjct: 267 YTDRVDYLGGCAQNMPYVMAVEQMAGIKVPERAQVIRVMLNELFRINNHLLFCGTAIQDA 326
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP + F +R+K+ E +G RMH A+FR GG D+P + + + P
Sbjct: 327 GGMTPVFYMFADRQKVYDIVEAITGYRMHPAWFRIGGTAHDLPNNWQKLVKDLLEWMPKR 386
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
LN+ N +F R N+ + A WG +G +R +G +D+RK +PY Y
Sbjct: 387 LNEYYTAALKNSVFIGRTRNVAQYDAKSALAWGVTGTGLRATGIDFDVRKYRPYSGYENF 446
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DFD+P+ GD Y R LV E+ ES+KII+QC++ + GP A P VPP +
Sbjct: 447 DFDVPVEYEGDAYARVLVHFREITESLKIIQQCLDNM----PSGPYKADHPLAVPPPKDK 502
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ +E+LI HF + G +P GE E KG YL SD YR +IR P +
Sbjct: 503 TLQDIETLITHFLSVSWGPVMPAGESSFMTEVVKGASTYYLTSDKSTMSYRTRIRTPTFT 562
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ M + G ++D+ L ++D+V +VDR
Sbjct: 563 HLQQMPAVINGSLVSDLIIYLATIDVVMADVDR 595
>gi|308187602|ref|YP_003931733.1| NADH dehydrogenase I chain C/D [Pantoea vagans C9-1]
gi|308058112|gb|ADO10284.1| NADH dehydrogenase I chain C/D [Pantoea vagans C9-1]
Length = 599
Score = 370 bits (950), Expect = e-100, Method: Composition-based stats.
Identities = 149/395 (37%), Positives = 219/395 (55%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +
Sbjct: 209 TTNEDFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 268
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 269 PYTDRIEYLGGCVNEMPYVLAVEKLAGIVVPDRVNVIRVMLSELFRINSHLLYISTFIQD 328
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 329 VGAMTPVFFAFTDRQKIYDVVEAITGFRMHPAWFRIGGVAHDLPRGWERLLRDFLDWMPK 388
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L + N + R+ + +E+A WG +G +R +G +D+RK +PY Y
Sbjct: 389 RLKEYDKAALRNTVLIGRSKGVAAYNMEEALAWGTTGAGLRATGLDFDVRKWRPYSGYEN 448
Query: 243 LDFDIPIGK-HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF+IP+G D Y R ++M EM +S++I+ QC+N + GP A P PP +
Sbjct: 449 FDFEIPVGDGVSDAYSRVQLKMEEMWQSLRILEQCLNNM----PEGPFKADHPLTTPPPK 504
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + +EA KG YL SDG YR ++R P
Sbjct: 505 ERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPS 564
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ HLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 565 FPHLQQIPSVIRGSLVSDLIVYLGSIDFVMSDVDR 599
>gi|71892264|ref|YP_277998.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Candidatus
Blochmannia pennsylvanicus str. BPEN]
gi|123640868|sp|Q492H8|NUOCD_BLOPB RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|71796370|gb|AAZ41121.1| NADH dehydrogenase I chain C, D [Candidatus Blochmannia
pennsylvanicus str. BPEN]
Length = 596
Score = 370 bits (949), Expect = e-100, Method: Composition-based stats.
Identities = 154/394 (39%), Positives = 225/394 (57%), Gaps = 5/394 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K +N GP HP+ HGV R+IL+L+GE + P IG HRG EK+ E +T+ +P
Sbjct: 207 KHENFMFLNLGPNHPSVHGVFRIILQLNGEEIIDCVPDIGYHHRGAEKMGERQTWHSYIP 266
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR++Y+ E Y LAVEKL GI +P R ++IR++ SE+ RI SHLL ++T DV
Sbjct: 267 YTDRIEYLGGCVNEMPYILAVEKLAGITVPDRVKVIRIMLSELFRINSHLLYISTYLQDV 326
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA++P F +R+K+ E +GSRMH A+FR GGV D+P + D P
Sbjct: 327 GAMSPVFLAFTDRQKIYDVIESITGSRMHPAWFRIGGVAHDLPRGWECLLRKCLDWIPHR 386
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
++ N IFK+R IG +DA WG +G +R +G +D+RKS+PY Y
Sbjct: 387 VSFYVKSTLENSIFKKRACGIGAYNAKDALDWGVTGAGLRATGIEFDIRKSRPYSGYENF 446
Query: 244 DFDIPIGK-HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DFD+PIG D Y R ++++ E+ +SV+I+ QC+ + +GP + P PP +
Sbjct: 447 DFDVPIGNGISDSYSRVMLKVEEIYQSVRILEQCLQNM----PIGPFKSDHPLATPPMKE 502
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ +E+LI HF + G +P E + +EA KG YLISDG YR +IR P +
Sbjct: 503 YALQHIETLITHFLQVSWGPVIPANESFQMIEATKGINSYYLISDGNTMSYRTRIRTPSF 562
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 563 PHLQQIPHVIRGSLISDLIVYLGSIDFVMSDVDR 596
>gi|33239649|ref|NP_874591.1| NAD(P)H-quinone oxidoreductase subunit H [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
gi|81712850|sp|Q7VE17|NDHH_PROMA RecName: Full=NAD(P)H-quinone oxidoreductase subunit H; AltName:
Full=NAD(P)H dehydrogenase subunit H; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H;
AltName: Full=NDH-1 subunit H; Short=NDH-H
gi|33237174|gb|AAP99243.1| NAD(P)H-quinone oxidoreductase chain H [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
Length = 394
Score = 370 bits (949), Expect = e-100, Method: Composition-based stats.
Identities = 158/395 (40%), Positives = 227/395 (57%), Gaps = 6/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +NFGP HP+ HGVLRL++ LDGE V +P IG LHRG EK+ E +T + V
Sbjct: 5 ETRTEPMVVNFGPHHPSMHGVLRLVVTLDGEDVIDCEPVIGYLHRGMEKIAENRTNVMFV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R+DY A M E A E+L I IP R IRVL E+ RI +HLL + D
Sbjct: 65 PYVSRMDYAAGMFYEAIVVNAPERLANISIPKRASYIRVLMLELNRIANHLLWLGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSR-MHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E A+G R ++ +FR GGV D+P +E +CD F
Sbjct: 125 VGAQTPFFYIFREREMIYDLWEAATGQRLINNNFFRIGGVACDLPWGWLEKCKDFCDWFG 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R +G++ E A W SG M+R SG WDLRK YECY
Sbjct: 185 PKIDEYEKLITNNPIFRRRIEGLGSISKEKAINWSLSGPMLRASGVPWDLRKVDHYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D++I I + GDCY RY VR+ EMR+S++I+RQ + G GP + + +
Sbjct: 245 DFDWNIAIAEEGDCYARYRVRIEEMRQSLRILRQACEMIPG----GPTENLEASRIAEGK 300
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ + K + +P GE+Y +E+ KGE GV++ + P+R KIRA
Sbjct: 301 NSPFAGFD-FQYVAKKVAPTFKIPNGELYTRLESGKGEIGVFIQGNNDVTPWRFKIRAAD 359
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + + KG ++AD+ AILGS+D++ G VDR
Sbjct: 360 LNNLQILPHILKGAKVADIMAILGSIDVIMGSVDR 394
>gi|149374625|ref|ZP_01892399.1| NADH dehydrogenase I, D subunit [Marinobacter algicola DG893]
gi|149361328|gb|EDM49778.1| NADH dehydrogenase I, D subunit [Marinobacter algicola DG893]
Length = 586
Score = 370 bits (949), Expect = e-100, Method: Composition-based stats.
Identities = 151/395 (38%), Positives = 227/395 (57%), Gaps = 4/395 (1%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
++ + +N GP HP+AHG R++L+LDGE + P IG HRG EK+ E +++
Sbjct: 196 ERDGAEFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMAERQSWHSF 255
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+PY DR+DY + Y LA EKL GIE P R ++IRV+ +E+ RI SHLL + T
Sbjct: 256 IPYTDRIDYTGGVMNNLPYVLAAEKLAGIEAPDRVKVIRVMMAEMFRITSHLLFLGTYLQ 315
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D+GA+TP + F +R++ E +G RMH A++R GGV QD+P + + + D P
Sbjct: 316 DLGAMTPVFYTFSDRQRGYEVIEGITGFRMHPAWYRIGGVMQDLPQGWEKLVQGFLDWMP 375
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+ L + + N I ++R ++ +A WG +G +R +G +DLRK +PY Y
Sbjct: 376 ARLKEYERAMMDNAIVRERTRHVAAFNTAEALEWGVTGPNLRATGCDFDLRKQRPYSGYE 435
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ DF++P+G +GD +DR +R+ EMR+S++II+QCVN + G A P PP R
Sbjct: 436 QFDFEVPLGHNGDVFDRGQLRIDEMRQSLRIIQQCVNNMPA----GDYKADHPLTTPPPR 491
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
M + +E+LI HF + G + E +EA KG YL SDG YR +IR P
Sbjct: 492 ERMLQHIETLITHFLQVSWGPVLEPNESLQMIEATKGINSYYLTSDGNTMSYRTRIRTPS 551
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ HLQ + + +G + D+ A LGS+D V +VDR
Sbjct: 552 FPHLQQIPAVMRGGFVPDLIAHLGSIDFVMADVDR 586
>gi|78778560|ref|YP_396672.1| NAD(P)H-quinone oxidoreductase subunit H [Prochlorococcus marinus
str. MIT 9312]
gi|123554750|sp|Q31D09|NDHH_PROM9 RecName: Full=NAD(P)H-quinone oxidoreductase subunit H; AltName:
Full=NAD(P)H dehydrogenase subunit H; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H;
AltName: Full=NDH-1 subunit H; Short=NDH-H
gi|78712059|gb|ABB49236.1| NADH dehydrogenase subunit D [Prochlorococcus marinus str. MIT
9312]
Length = 395
Score = 370 bits (949), Expect = e-100, Method: Composition-based stats.
Identities = 157/395 (39%), Positives = 226/395 (57%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ +NFGP HP+ HGVLRL++ LDGE V +P IG LHRG EK+ E +T + V
Sbjct: 5 ETRTEPMVVNFGPHHPSMHGVLRLVVTLDGENVIDCEPVIGYLHRGMEKIAENRTNVMYV 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY R+DY A M E A E+L I +P R IRVL E+ RI +HLL + D
Sbjct: 65 PYVSRMDYAAGMFYEAIVVNAPERLANIPVPKRASYIRVLMLELNRIANHLLWLGPFLAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSR-MHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VGA TP + F ERE + +E A+G R ++ +FR GGV D+P +E +CD F
Sbjct: 125 VGAQTPFFYIFREREMIYDLWEAATGQRLINNNFFRIGGVACDLPYGWLEKCIDFCDWFG 184
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF++R +GT++ + A W SG M+R SG +WDLRK YECY
Sbjct: 185 PKIDEYEKLITNNPIFRKRIEGLGTIERDQAINWSLSGPMLRASGVSWDLRKVDSYECYD 244
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D+ I K GDCY RY VR+ EMR+S+ IIRQ + G + K+
Sbjct: 245 DFDWQIASEKEGDCYARYRVRVEEMRQSLSIIRQACKMIPGGPTEN--LEAQRMATEDKK 302
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+++ + K + +P GE+Y +E+ KGE GV++ + P+R KIRA
Sbjct: 303 SEIFG--IDYQYVAKKVAPTFKIPNGELYTRLESGKGEIGVFIQGNNEVTPWRFKIRAAD 360
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ + + KG ++AD+ AILGS+D++ G VDR
Sbjct: 361 LNNLQILPHILKGAKIADIMAILGSIDVIMGSVDR 395
>gi|283832284|ref|ZP_06352025.1| NADH-quinone oxidoreductase, C/D subunit [Citrobacter youngae ATCC
29220]
gi|291071928|gb|EFE10037.1| NADH-quinone oxidoreductase, C/D subunit [Citrobacter youngae ATCC
29220]
Length = 600
Score = 370 bits (949), Expect = e-100, Method: Composition-based stats.
Identities = 151/395 (38%), Positives = 224/395 (56%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP++HG R++L+LDGE + P IG HRG EK+ E +++ +
Sbjct: 210 TENEDFMFLNLGPNHPSSHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 269
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 270 PYTDRIEYLGGCVNEMPYVLAVEKLAGITTPDRVNVIRVMLSELFRINSHLLYISTFIQD 329
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + + D P
Sbjct: 330 VGAMTPVFFAFTDRQKIYDVVEAITGYRMHPAWFRIGGVAHDLPRGWDKLLRDFLDWMPK 389
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R+ + ++A WG +G +R +G +D+RK++PY Y
Sbjct: 390 RLDSYEKAALRNTILKGRSQGVAAYGKKEALDWGCTGAALRATGIDFDVRKARPYSGYEN 449
Query: 243 LDFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF++P+ G DCY R ++++ E+R+S++I+ QC+N + GP A P PP +
Sbjct: 450 FDFEVPVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNM----PEGPFKADHPLTTPPPK 505
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + VEA KG YL SDG YR +IR P
Sbjct: 506 ERTLQHIETLITHFLQVSWGPVMPANESFQMVEATKGINSYYLTSDGSTMSYRTRIRTPS 565
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YAHLQ + +G ++D+ LGS+D V +VDR
Sbjct: 566 YAHLQQIPVAVRGSLVSDLIVHLGSIDFVMSDVDR 600
>gi|330889658|gb|EGH22319.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas syringae pv. mori str. 301020]
Length = 593
Score = 370 bits (949), Expect = e-100, Method: Composition-based stats.
Identities = 155/390 (39%), Positives = 227/390 (58%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +PY D
Sbjct: 208 DYMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMAERQSWHSFIPYTD 267
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+DY+ + Y L+VEKL GI++P + +IR++ +E RI SHLL + T DVGA+
Sbjct: 268 RIDYLGGVMNNLPYVLSVEKLAGIKVPEKVDVIRIMMAEFFRITSHLLFLGTYIQDVGAM 327
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP + F +R+K E +G R+H A++R GGV D+P + + + D P L++
Sbjct: 328 TPVFFTFTDRQKAYTVIEAITGFRLHPAWYRIGGVAHDLPRGWEKLVKDFVDWLPKRLDE 387
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ N I K R V + K ++A WG +G +R +G +DLRK++PY Y +F+
Sbjct: 388 YTKAALQNTILKGRTVGVAAYKTKEALEWGVTGAGLRSTGCDFDLRKARPYSGYENFEFE 447
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+P+ +GD YDR +VR+ EMR+S+KII QC+ + GP A P PP + +
Sbjct: 448 VPLAANGDAYDRCMVRVEEMRQSIKIIDQCMRNM----PEGPYKADHPLTTPPPKERTLQ 503
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+E+LI HF + G +P E + +EA KG YL SDGG YR +IR P Y HLQ
Sbjct: 504 HIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGGTMSYRTRIRTPSYPHLQ 563
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + KG +AD+ A LGS+D V +VDR
Sbjct: 564 QIPSVIKGSMVADLIAYLGSIDFVMADVDR 593
>gi|66046428|ref|YP_236269.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas syringae pv. syringae B728a]
gi|75501521|sp|Q4ZRJ1|NUOCD_PSEU2 RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|63257135|gb|AAY38231.1| NADH (or F420H2) dehydrogenase, subunit C:NADH dehydrogenase I, D
subunit [Pseudomonas syringae pv. syringae B728a]
Length = 593
Score = 370 bits (949), Expect = e-100, Method: Composition-based stats.
Identities = 153/390 (39%), Positives = 226/390 (57%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +PY D
Sbjct: 208 DYMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMAERQSWHSFIPYTD 267
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+DY+ + Y L+VEKL GI++P + +IR++ +E RI SHLL + T DVGA+
Sbjct: 268 RIDYLGGVMNNLPYVLSVEKLAGIKVPEKVDVIRIMMAEFFRITSHLLFLGTYIQDVGAM 327
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP + F +R+K E +G R+H A++R GGV D+P + + + D P L++
Sbjct: 328 TPVFFTFTDRQKAYTVIEAITGFRLHPAWYRIGGVAHDLPRGWEKLVKDFVDWLPKRLDE 387
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ N I K R + + ++A WG +G +R +G +DLRK++PY Y +F+
Sbjct: 388 YTKAALQNSILKGRTIGVAAYNTKEALEWGVTGAGLRSTGCDFDLRKARPYSGYENFEFE 447
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+P+ +GD YDR +VR+ EMR+S+KII QC+ + GP A P PP + +
Sbjct: 448 VPLAANGDAYDRCMVRVEEMRQSIKIIDQCMRNM----PEGPYKADHPLTTPPPKERTLQ 503
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+E+LI HF + G +P E + +EA KG YL SDGG YR +IR P Y HLQ
Sbjct: 504 HIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGGTMSYRTRIRTPSYPHLQ 563
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + KG +AD+ A LGS+D V +VDR
Sbjct: 564 QIPSVIKGSMVADLIAYLGSIDFVMADVDR 593
>gi|260598703|ref|YP_003211274.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Cronobacter turicensis z3032]
gi|260217880|emb|CBA32430.1| NADH-quinone oxidoreductase subunit C/D [Cronobacter turicensis
z3032]
Length = 599
Score = 370 bits (949), Expect = e-100, Method: Composition-based stats.
Identities = 146/391 (37%), Positives = 224/391 (57%), Gaps = 5/391 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +PY D
Sbjct: 213 DFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTD 272
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R++Y+ E Y LAVEKL GI++P R ++IRV+ SE+ RI SHLL ++T DVGA+
Sbjct: 273 RIEYLGGCVNEMPYVLAVEKLAGIQVPERVEVIRVMLSELFRINSHLLYISTFIQDVGAM 332
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP + F +R+K+ E +G RMH A+FR GGV D+P + + + P L+
Sbjct: 333 TPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLKEFLEWMPKRLDS 392
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
N I K R+ + ++A WG +G +R +G +D+RK++PY Y +F+
Sbjct: 393 YVKAALKNTILKGRSQGVAAYDAKEALAWGTTGAGLRATGIDFDVRKARPYSGYQNFEFE 452
Query: 247 IPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+P+ G DCY R ++++ E+R+S++I+ QC+ + GP A P PP +
Sbjct: 453 VPVGGGISDCYTRVMLKVEEVRQSLRILEQCLKNM----PEGPFKADHPLTTPPPKERTL 508
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
+ +E+LI HF + G +P E + +EA KG YL SDG YR ++R P + HL
Sbjct: 509 QHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPSFPHL 568
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Q + + +G ++D+ LGS+D V +VDR
Sbjct: 569 QQIPSVIRGSLVSDLIVYLGSIDFVMSDVDR 599
>gi|262373373|ref|ZP_06066652.1| NADH dehydrogenase (quinone), D subunit [Acinetobacter junii SH205]
gi|262313398|gb|EEY94483.1| NADH dehydrogenase (quinone), D subunit [Acinetobacter junii SH205]
Length = 595
Score = 369 bits (948), Expect = e-100, Method: Composition-based stats.
Identities = 148/393 (37%), Positives = 214/393 (54%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+N GP HP+AHG R++L+LDGE V+ P IG HRG EK+ E +T+ +P
Sbjct: 207 ADEDFMFLNLGPNHPSAHGAFRVVLQLDGEEVKDCVPDIGYHHRGVEKMAERQTWHSFIP 266
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ Q Y +AVE+L GI++P R Q+IRV+ +E+ RI +HLL T D
Sbjct: 267 YTDRVDYLGGCAQNMPYVMAVEQLAGIKVPERAQVIRVMLNELFRINNHLLFCGTAIQDA 326
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP + F +R+K+ E +G RMH A+FR GG D+P + + + P
Sbjct: 327 GGMTPVFYMFADRQKVYDIVEAITGYRMHPAWFRIGGTAHDLPNNWQKLVRELLEWMPKR 386
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
LN+ N +F R N+ + A WG +G +R +G +D+RK +PY Y
Sbjct: 387 LNEYYTAALKNSVFIGRTRNVAQYDAKSALAWGVTGTGLRATGIDFDVRKYRPYSGYENF 446
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DFD+P+ GD Y R LV E+ ES+KII+QC++ + GP A P VPP +
Sbjct: 447 DFDVPVEYEGDAYARVLVHFREITESLKIIQQCLDNM----PSGPYKADHPLAVPPPKDK 502
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ +E+LI HF + G +P GE E KG YL SD YR +IR P +
Sbjct: 503 TLQDIETLITHFLSVSWGPVMPAGESSFMTEVVKGASTYYLTSDKSTMSYRTRIRTPTFT 562
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ M + G ++D+ L ++D+V +VDR
Sbjct: 563 HLQQMPSVINGSLVSDLIIYLATIDVVMADVDR 595
>gi|260551031|ref|ZP_05825236.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Acinetobacter sp. RUH2624]
gi|260405979|gb|EEW99466.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Acinetobacter sp. RUH2624]
Length = 595
Score = 369 bits (948), Expect = e-100, Method: Composition-based stats.
Identities = 147/393 (37%), Positives = 214/393 (54%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+N GP HP+AHG R++L+LDGE V+ P IG HRG EK+ E +T+ +P
Sbjct: 207 ADEDFMFLNLGPNHPSAHGAFRIVLQLDGEEVKDCVPDIGYHHRGVEKMAERQTWHSFIP 266
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ Q Y +AVE+L GI++P R Q+IRV+ +E+ RI +HLL T D
Sbjct: 267 YTDRVDYLGGCAQNMPYVMAVEQLAGIKVPERAQVIRVMLNELFRINNHLLYCGTAIQDA 326
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP + F +R+K+ E +G RMH A+FR GG D+P + + + P
Sbjct: 327 GGMTPVFYMFADRQKVYDIVEAITGYRMHPAWFRIGGTAHDLPNNWQKLVKELLEWMPKR 386
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
LN+ N +F R N+ + A WG +G +R +G +D+RK +PY Y
Sbjct: 387 LNEYYTAALKNSVFIGRTRNVAQYDAKSALAWGVTGTGLRATGIDFDVRKYRPYSGYENF 446
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DFD+P+ GD Y R LV E+ ES+KII+QC++ + GP A P VPP +
Sbjct: 447 DFDVPVEYEGDAYARVLVHFREITESLKIIKQCLDNM----PSGPYKADHPLAVPPPKDK 502
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ +E+LI HF + G +P GE E KG YL SD YR +IR P +
Sbjct: 503 TLQDIETLITHFLSVSWGPVMPAGEASFMTEVVKGASTYYLTSDKATMSYRTRIRTPTFT 562
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ + + G ++D+ L ++D+V +VDR
Sbjct: 563 HLQQIPSVINGSLVSDLIIYLATIDVVMADVDR 595
>gi|104782523|ref|YP_609021.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas entomophila L48]
gi|122402718|sp|Q1I7Z8|NUOCD_PSEE4 RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|95111510|emb|CAK16230.1| NADH dehydrogenase I chain C, D [Pseudomonas entomophila L48]
Length = 593
Score = 369 bits (948), Expect = e-100, Method: Composition-based stats.
Identities = 150/390 (38%), Positives = 226/390 (57%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GP HP+AHG R++L+LDGE + P IG HRG EK+ E +++ +PY D
Sbjct: 208 DYMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMAERQSWHSFIPYTD 267
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+DY+ + Y LAVEKL GI++P + +IR++ +E RI SHLL + T DVGA+
Sbjct: 268 RIDYLGGVMNNLPYVLAVEKLAGIQVPQKVDVIRIMLAEFFRITSHLLFLGTYIQDVGAM 327
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP + F +R++ E +G R+H A++R GGV D+P + + + + P L++
Sbjct: 328 TPVFFTFTDRQRAYTVIEAITGFRLHPAWYRIGGVAHDLPRGWDKLVKDFVEWLPKRLDE 387
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ N I K R + + ++A WG +G +R +G +DLRK++PY Y +F+
Sbjct: 388 YTKAALQNSILKGRTIGVAAYNTKEALEWGTTGAGLRATGCNFDLRKARPYSGYENFEFE 447
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+P+ +GD YDR +VR+ EMR+S++II QC+ + GP A P PP + +
Sbjct: 448 VPLAHNGDAYDRCMVRVEEMRQSIRIIDQCLRNM----PEGPYKADHPLTTPPPKERTLQ 503
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+E+LI HF + G +P E + +EA KG YL SDGG YR +IR P Y HLQ
Sbjct: 504 HIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGGTMSYRTRIRTPSYPHLQ 563
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + KG +AD+ A LGS+D V +VDR
Sbjct: 564 QIPSVIKGSMVADLIAYLGSIDFVMADVDR 593
>gi|226953550|ref|ZP_03824014.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Acinetobacter sp. ATCC 27244]
gi|294649462|ref|ZP_06726886.1| NADH-quinone oxidoreductase subunit C [Acinetobacter haemolyticus
ATCC 19194]
gi|226835728|gb|EEH68111.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Acinetobacter sp. ATCC 27244]
gi|292824632|gb|EFF83411.1| NADH-quinone oxidoreductase subunit C [Acinetobacter haemolyticus
ATCC 19194]
Length = 595
Score = 369 bits (948), Expect = e-100, Method: Composition-based stats.
Identities = 148/392 (37%), Positives = 214/392 (54%), Gaps = 4/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+N GP HP+AHG R++L+LDGE V+ P IG HRG EK+ E +T+ +PY
Sbjct: 208 DEDFMFLNLGPNHPSAHGAFRVVLQLDGEEVKDCVPDIGYHHRGVEKMAERQTWHSFIPY 267
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY+ Q Y +AVE+L GI++P R Q+IRV+ +E+ RI +HLL T D G
Sbjct: 268 TDRVDYLGGCAQNMPYVMAVEQLAGIKVPERAQVIRVMLNELFRINNHLLYCGTAIQDAG 327
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
+TP + F +R+K+ E +G RMH A+FR GG D+P + + + P L
Sbjct: 328 GMTPVFYMFADRQKVYDIVEAITGYRMHPAWFRIGGTAHDLPNNWQKLVKELLEWMPKRL 387
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
N+ N +F R N+ + A WG +G +R +G +D+RK +PY Y D
Sbjct: 388 NEYYTAALKNSVFIGRTRNVAQYDAKSALAWGVTGTGLRATGIDFDVRKYRPYSGYENFD 447
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDIP+ GD Y R LV E+ ES+KII+QC++ + GP A P VPP +
Sbjct: 448 FDIPVEYEGDAYARVLVHFREITESLKIIQQCLDNM----PSGPYKADHPLAVPPPKDKT 503
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
+ +E+LI HF + G +P GE E KG YL SD YR +IR P + H
Sbjct: 504 LQDIETLITHFLSVSWGPVMPAGEASFMTEVVKGASTYYLTSDKSTMSYRTRIRTPTFTH 563
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
LQ + + G ++D+ L ++D+V +VDR
Sbjct: 564 LQQIPSVINGSLVSDLIIYLATIDVVMADVDR 595
>gi|291618187|ref|YP_003520929.1| NuoC [Pantoea ananatis LMG 20103]
gi|291153217|gb|ADD77801.1| NuoC [Pantoea ananatis LMG 20103]
gi|327394580|dbj|BAK12002.1| NADH-quinone oxidoreductase chain C/D NuoC [Pantoea ananatis
AJ13355]
Length = 599
Score = 369 bits (948), Expect = e-100, Method: Composition-based stats.
Identities = 148/395 (37%), Positives = 219/395 (55%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +
Sbjct: 209 TANEDFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 268
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 269 PYTDRIEYLGGCVNEMPYVLAVEKLAGIVVPDRVNVIRVMLSELFRINSHLLYISTFIQD 328
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 329 VGAMTPVFFAFTDRQKIYDVVEAITGFRMHPAWFRIGGVAHDLPKGWERLLRDFLDWMPK 388
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L + N + R+ + +E+A WG +G +R +G +D+RK +PY Y
Sbjct: 389 RLKEYDKAALRNTVLMGRSQGVAAYNMEEALAWGTTGAALRATGLDFDVRKWRPYSGYEN 448
Query: 243 LDFDIPIGK-HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF++P+G D Y R ++M EM +S++I+ QC+N + GP A P PP +
Sbjct: 449 FDFEVPVGAGISDAYTRVQLKMEEMWQSLRILEQCLNNM----PEGPFKADHPLTTPPPK 504
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + +EA KG YL SDG YR ++R P
Sbjct: 505 ERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPS 564
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ HLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 565 FPHLQQIPSVIRGSLVSDLIVYLGSIDFVMSDVDR 599
>gi|237732317|ref|ZP_04562798.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Citrobacter sp. 30_2]
gi|226907856|gb|EEH93774.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Citrobacter sp. 30_2]
Length = 600
Score = 369 bits (948), Expect = e-100, Method: Composition-based stats.
Identities = 151/395 (38%), Positives = 224/395 (56%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP++HG R++L+LDGE + P IG HRG EK+ E +++ +
Sbjct: 210 TENEDFMFLNLGPNHPSSHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 269
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 270 PYTDRIEYLGGCVNEMPYVLAVEKLAGITTPDRVNVIRVMLSELFRINSHLLYISTFIQD 329
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + + D P
Sbjct: 330 VGAMTPVFFAFTDRQKIYDVVEAITGFRMHPAWFRIGGVAHDLPRGWDKLLRDFLDWMPK 389
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R+ + ++A WG +G +R +G +D+RK++PY Y
Sbjct: 390 RLDSYEKAALRNTILKGRSQGVAAYGKKEALDWGCTGAALRATGIDFDVRKARPYSGYEN 449
Query: 243 LDFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF++P+ G DCY R ++++ E+R+S++I+ QC+N + GP A P PP +
Sbjct: 450 FDFEVPVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNM----PEGPFKADHPLTTPPPK 505
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + VEA KG YL SDG YR +IR P
Sbjct: 506 ERTLQHIETLITHFLQVSWGPVMPANESFQMVEATKGINSYYLTSDGSTMSYRTRIRTPS 565
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YAHLQ + +G ++D+ LGS+D V +VDR
Sbjct: 566 YAHLQQIPVAVRGSLVSDLIVHLGSIDFVMSDVDR 600
>gi|297570899|ref|YP_003696673.1| NADH dehydrogenase I, D subunit [Arcanobacterium haemolyticum DSM
20595]
gi|296931246|gb|ADH92054.1| NADH dehydrogenase I, D subunit [Arcanobacterium haemolyticum DSM
20595]
Length = 449
Score = 369 bits (948), Expect = e-100, Method: Composition-based stats.
Identities = 167/413 (40%), Positives = 229/413 (55%), Gaps = 19/413 (4%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
++ +N GP HP+ HGVLR+ +ELDGE V+ V G LH G EK +E +T+ Q
Sbjct: 38 EQVGEEHIVVNLGPVHPSTHGVLRVQVELDGENVKEVRAATGFLHTGIEKNMEYRTWTQG 97
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
V + R+DYVAP+ QE AY L +EK+LGI ++P R Q IRVL E+ RI SHL+ + +
Sbjct: 98 VAFCTRMDYVAPIFQEVAYCLGIEKMLGIADQVPERAQAIRVLLMELTRISSHLVGIGSG 157
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
++GA T F RE ++ E +G RM+ Y RPGGV DIP +
Sbjct: 158 GNELGATTMLTLTFRAREDILRLLEDVTGLRMNHEYIRPGGVLNDIPEGFTDYCRELLPK 217
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
++++ DL N IF R+VN+G L +G +R +G WDLRK+QPY
Sbjct: 218 IRLTISEMQDLTMKNPIFLDRHVNVGVSPLSSMMALSMTGPSVRAAGIPWDLRKTQPYCG 277
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + +FD+P+ D Y+R V+ E ES++I Q ++ L PV D KI P
Sbjct: 278 YEKYEFDVPVADKADAYNRIDVKFRECYESLRICYQVLDELDKTAGQ-PVMVGDKKIAWP 336
Query: 300 K----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVY 343
R M SMESLIHHFKL TEG+ VP G+ + VE PKG FGV+
Sbjct: 337 AQLSIAGDGQGSTPEHVREIMTESMESLIHHFKLVTEGFRVPPGQSFTMVEHPKGVFGVH 396
Query: 344 LISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
L+SDGG +PYR R PG+ +LQ++ + +G LAD+ L +D V G VDR
Sbjct: 397 LVSDGGTRPYRAHFRDPGFNNLQSLSMMAEGGMLADLVVSLAGVDPVMGGVDR 449
>gi|330972909|gb|EGH72975.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas syringae pv. aceris str. M302273PT]
Length = 593
Score = 369 bits (947), Expect = e-100, Method: Composition-based stats.
Identities = 153/390 (39%), Positives = 226/390 (57%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +PY D
Sbjct: 208 DYMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMAERQSWHSFIPYTD 267
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+DY+ + Y L+VEKL GI++P + +IR++ +E RI SHLL + T DVGA+
Sbjct: 268 RIDYLGGVMNNLPYVLSVEKLAGIKVPEKVDVIRIMMAEFFRITSHLLFLGTYIQDVGAM 327
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP + F +R+K E +G R+H A++R GGV D+P + + + D P L++
Sbjct: 328 TPVFFTFTDRQKAYTVIEAITGFRLHPAWYRIGGVAHDLPRGWEKLVKDFVDWLPKRLDE 387
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ N I K R + + ++A WG +G +R +G +DLRK++PY Y +F+
Sbjct: 388 YTKAALQNSILKGRTIGVAAYNTKEALEWGVTGAGLRSTGCDFDLRKARPYSGYENFEFE 447
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+P+ +GD YDR +VR+ EMR+S+KII QC+ + GP A P PP + +
Sbjct: 448 VPLAANGDAYDRCMVRVEEMRQSIKIIDQCMRNM----PEGPYKADHPLTTPPPKERTLQ 503
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+E+LI HF + G +P E + +EA KG YL SDGG YR +IR P Y HLQ
Sbjct: 504 HIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGGTMSYRTRIRTPSYPHLQ 563
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + KG +AD+ A LGS+D V +VDR
Sbjct: 564 QIPSVIKGSMVADLIAYLGSIDFVMADVDR 593
>gi|85059577|ref|YP_455279.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Sodalis
glossinidius str. 'morsitans']
gi|123519201|sp|Q2NSK1|NUOCD_SODGM RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|84780097|dbj|BAE74874.1| NADH dehydrogenase I subunit C/D [Sodalis glossinidius str.
'morsitans']
Length = 599
Score = 369 bits (947), Expect = e-100, Method: Composition-based stats.
Identities = 148/395 (37%), Positives = 221/395 (55%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K +N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +
Sbjct: 209 KDNEDFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 268
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 269 PYTDRVEYLGGCVNEMPYVLAVEKLAGIVVPDRVNVIRVMLSELFRINSHLLYISTYIQD 328
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VG +TP F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 329 VGGMTPVFLAFTDRQKIYDVVEAITGFRMHPAWFRIGGVAHDLPRGWEGLLREFLDWLPK 388
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ + N + + R + ++A WG +G +R +G +D+RK +PY Y
Sbjct: 389 RLDSYVKVALRNSVLRARAEGVAAYGAKEALDWGVTGAALRATGIDFDVRKWRPYSGYEN 448
Query: 243 LDFDIPIGK-HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+F++P+G DCY R ++++ EMR+S++I+ QC+N + GP A P PP +
Sbjct: 449 FNFEVPVGDGVSDCYSRVMLKVEEMRQSLRILEQCLNNMPA----GPFKADHPLTTPPPK 504
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + +EA KG YL SDG YR +IR P
Sbjct: 505 ERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPS 564
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ HLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 565 FPHLQQIPSVIRGSLVSDLIVYLGSIDFVMSDVDR 599
>gi|261820794|ref|YP_003258900.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pectobacterium wasabiae WPP163]
gi|261604807|gb|ACX87293.1| NADH dehydrogenase I, D subunit [Pectobacterium wasabiae WPP163]
Length = 599
Score = 369 bits (947), Expect = e-100, Method: Composition-based stats.
Identities = 151/395 (38%), Positives = 226/395 (57%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP++HG R+IL+LDGE + P +G HRG EK+ E +++ +
Sbjct: 209 TENEDFMFLNLGPNHPSSHGAFRIILQLDGEEIVDCVPDVGYHHRGAEKMGERQSWHSYI 268
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GIE+P R + IRV+ SE+ RI SHLL ++T D
Sbjct: 269 PYTDRIEYLGGCVNEMPYVLAVEKLAGIEVPDRVKTIRVMLSELFRINSHLLYISTYIQD 328
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P+
Sbjct: 329 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWERLLREFLDWMPA 388
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R + ++A WG +G +R +G +D+RK +PY Y
Sbjct: 389 RLDTYVKSALQNTILKGRTQGVAAYNAKEALDWGVTGAGLRATGIGFDVRKWRPYSGYEN 448
Query: 243 LDFDIPIGK-HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF++P+G DCY R ++++ E+R+S++I+ QC+ + GP A P PP +
Sbjct: 449 FDFEVPVGDGISDCYSRVMLKVEELRQSLRILDQCLKNM----PEGPFKADHPLTTPPPK 504
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +++LI+HF + G +P E + VEA KG YL SDGG YR +IR P
Sbjct: 505 ERTLQHIDTLINHFLQVSWGPVMPANESFQMVEATKGINSYYLTSDGGTMSYRTRIRTPS 564
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YAHLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 565 YAHLQQIPSVIRGCLVSDLIVYLGSIDFVMSDVDR 599
>gi|319760614|ref|YP_004124552.1| NADH-quinone oxidoreductase subunit C/D [Candidatus Blochmannia
vafer str. BVAF]
gi|318039328|gb|ADV33878.1| NADH-quinone oxidoreductase subunit C/D [Candidatus Blochmannia
vafer str. BVAF]
Length = 596
Score = 369 bits (947), Expect = e-100, Method: Composition-based stats.
Identities = 149/391 (38%), Positives = 229/391 (58%), Gaps = 5/391 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GP HP+ HGV R++L+L+GE + P IG HRG EK+ E +++ +PY D
Sbjct: 210 DFMFLNLGPNHPSVHGVFRIVLQLNGEEIVDCVPDIGYHHRGVEKMGERQSWHSYIPYTD 269
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R++Y+ E Y LAVEKL GI +P R ++IR++ SE+ RI SHLL V+T D+G +
Sbjct: 270 RVEYLGGCVNEMPYILAVEKLAGIIVPDRAKVIRIMLSELFRINSHLLYVSTYLQDIGVM 329
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP F +R+K+ E +G+RMH A+FR GGV D+P + P +
Sbjct: 330 TPVFLAFTDRQKIYDVIEAITGARMHPAWFRIGGVACDLPDNWDYLLKQCLSWLPRRIAF 389
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
++ N I K+R IG+ +++A WG +G +R +G +D+RKS+PY Y DFD
Sbjct: 390 YIEMSLKNDILKKRTCGIGSYGVKEALDWGVTGAGLRATGIDFDIRKSRPYSGYENFDFD 449
Query: 247 IPIGK-HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+P+G DCY+R ++++ EM +S++I+ QC+N + GP+ ++ P PP++
Sbjct: 450 VPVGNGISDCYNRVVLKVEEMYQSIRILDQCLNNM----PEGPIKSTHPLTTPPEKTYSL 505
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
+ +E+LI HF + G +P E +EA KG YLISDG YR +IR P + HL
Sbjct: 506 QHIETLITHFLQVSWGPVIPPNESLQMIEATKGINSYYLISDGNTMSYRTRIRTPSFPHL 565
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Q + + +G ++D+ A LGS+D V +VDR
Sbjct: 566 QQIPSVIRGSLISDLIAYLGSIDFVMSDVDR 596
>gi|326772149|ref|ZP_08231434.1| NADH dehydrogenase (quinone), D subunit [Actinomyces viscosus C505]
gi|326638282|gb|EGE39183.1| NADH dehydrogenase (quinone), D subunit [Actinomyces viscosus C505]
Length = 462
Score = 369 bits (947), Expect = e-100, Method: Composition-based stats.
Identities = 170/418 (40%), Positives = 236/418 (56%), Gaps = 23/418 (5%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
D+ ++ +N GP HP+ HGVLRL+LE DGE+V V G LH G EK +E +T++Q
Sbjct: 45 DRLRNDRIVLNMGPVHPSTHGVLRLVLEADGEVVTEVRVGTGYLHTGIEKNMEYRTWVQG 104
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ R+DYVAP QE AYALAVEKLLGI +IP + + RVL E+ RI SH++ V T
Sbjct: 105 ETFVTRMDYVAPFFQEVAYALAVEKLLGITDDIPEKATVTRVLLMELNRIASHVVAVGTG 164
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
++G T F RE ++ +E SG RM+ AY RPGG+ QDIP E +
Sbjct: 165 GNEMGGTTLMTIAFRCRENILKAFEMVSGLRMNHAYIRPGGLAQDIPEGFTEFVRSVMPD 224
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
++++ LL N I K R + +G + L G +G +R +G DLR++ PY
Sbjct: 225 IKKDIHELELLLLENPILKSRFIGVGEISLAGGLALGLTGPCLRAAGYPLDLRRTNPYCG 284
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRL-----LGKNKVGPVSASDP 294
Y DF +P K DCY+R +R+ E ES+KI+ QC++RL G++ +DP
Sbjct: 285 YETYDFRVPTYKVSDCYNRLRIRLDEAYESLKIVSQCLDRLEEIAARGEDPSNTTMVADP 344
Query: 295 KIVPPK----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
I P R M SMESLIHHFKL T+G+ VP G+VY VE KG
Sbjct: 345 TIAWPARMSIATDGQGQSLEHVREIMGSSMESLIHHFKLVTQGFRVPAGQVYQTVEHAKG 404
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GV+ +SDGG +PYR R P +++LQ++ + +G +AD+ L S+D V G VDR
Sbjct: 405 ILGVHAVSDGGTRPYRVHFRDPSFSNLQSLAMMGEGGMIADLVPTLASIDPVLGGVDR 462
>gi|325067540|ref|ZP_08126213.1| NADH dehydrogenase subunit D [Actinomyces oris K20]
Length = 462
Score = 369 bits (947), Expect = e-100, Method: Composition-based stats.
Identities = 170/418 (40%), Positives = 235/418 (56%), Gaps = 23/418 (5%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
D+ ++ +N GP HP+ HGVLRL+LE DGE+V V G LH G EK +E +T++Q
Sbjct: 45 DRLRNDRIVLNMGPVHPSTHGVLRLVLEADGEVVTEVRVGTGYLHTGIEKNMEYRTWVQG 104
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ R+DYVAP QE AYALAVEKLLGI +IP + + RVL E+ RI SH++ V T
Sbjct: 105 ETFVTRMDYVAPFFQEVAYALAVEKLLGITDDIPEKATVTRVLLMELNRIASHVVAVGTG 164
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
++G T F RE ++ +E SG RM+ AY RPGG+ QDIP E +
Sbjct: 165 GNEMGGTTLMTIAFRCRENILKAFEMVSGLRMNHAYIRPGGLAQDIPEGFTEFVRSVMPD 224
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
L+++ LL N I K R + +G + L G +G +R +G DLR++ PY
Sbjct: 225 MKKDLHELELLLLENPILKSRFIGVGEISLAGGLALGLTGPCLRAAGYPLDLRRTNPYCG 284
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRL-----LGKNKVGPVSASDP 294
Y DF +P + DCY+R +R+ E ES+KI+ QC++RL G + +DP
Sbjct: 285 YETYDFRVPTYRVSDCYNRLRIRLDEAYESLKIVSQCLDRLEEIAARGDDPSNTTMVADP 344
Query: 295 KIVPPK----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
I P R M SMESLIHHFKL T+G+ VP G+VY VE KG
Sbjct: 345 TIAWPARMSIATDGQGQSLEHVREIMGSSMESLIHHFKLVTQGFRVPAGQVYQTVEHAKG 404
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GV+ +SDGG +PYR R P +++LQ++ + +G +AD+ L S+D V G VDR
Sbjct: 405 ILGVHAVSDGGTRPYRVHFRDPSFSNLQSLAMMGEGGMIADLVPTLASIDPVLGGVDR 462
>gi|109946842|ref|YP_664070.1| NADH dehydrogenase subunit D [Helicobacter acinonychis str. Sheeba]
gi|123362779|sp|Q17Z55|NUOD_HELAH RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|109714063|emb|CAJ99071.1| NADH dehydrogenase I chain D [Helicobacter acinonychis str. Sheeba]
Length = 409
Score = 369 bits (947), Expect = e-100, Method: Composition-based stats.
Identities = 166/394 (42%), Positives = 243/394 (61%), Gaps = 2/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +NFGPQHP++HG LRLILEL+GE + + P IG LHRG EKL E T+ + +
Sbjct: 18 EHDDNQMVLNFGPQHPSSHGQLRLILELEGERIIKATPEIGYLHRGCEKLGENMTYNEYM 77
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DRLDY + + +AYA AVE LL +EIP R Q+IR + E+ R++SH+ ++ A+D
Sbjct: 78 PTTDRLDYTSSASNNYAYAHAVETLLNLEIPRRAQVIRTILLELNRMISHIFFISVHALD 137
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA++ L+ F+ RE + E G+R+ R GGV D+PP +E + +
Sbjct: 138 VGAMSVFLYAFKTREHGLDLMEDYCGARLTHNAIRIGGVPLDLPPNWLEGLKKFLGEMRE 197
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
I LL NRI++ R N+G V + A WG SG+M+RG+G A+D+RK +PYE Y E
Sbjct: 198 CKKLIQGLLDKNRIWRMRLENVGVVTPKMAQSWGMSGIMLRGTGIAYDIRKEEPYELYRE 257
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LDFD+P+G +GD YDRY + M+E+ ES++II Q + + P+ A +P + +
Sbjct: 258 LDFDVPVGNYGDSYDRYCLYMLEIDESIRIIEQLIPMYAKTD--TPIMAQNPHYISAPKE 315
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
D+ +L+ HF L +G P+GEVYA E+PKGE G ++ S+G + P+R KIRAP +
Sbjct: 316 DIMTQNYALMQHFVLVAQGMRPPIGEVYAPTESPKGELGFFIHSEGESYPHRLKIRAPSF 375
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H+ ++ + G LAD ++GS + VFGEVDR
Sbjct: 376 YHIGSLGDILVGQYLADAVTVIGSTNAVFGEVDR 409
>gi|162286749|ref|YP_001083796.2| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Acinetobacter baumannii ATCC 17978]
gi|169634179|ref|YP_001707915.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Acinetobacter baumannii SDF]
gi|169797056|ref|YP_001714849.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Acinetobacter baumannii AYE]
gi|184157031|ref|YP_001845370.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Acinetobacter baumannii ACICU]
gi|213156538|ref|YP_002318199.1| NADH dehydrogenase I chain CD [Acinetobacter baumannii AB0057]
gi|215484517|ref|YP_002326752.1| NADH-quinone oxidoreductase subunit C/D [Acinetobacter baumannii
AB307-0294]
gi|239501292|ref|ZP_04660602.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Acinetobacter baumannii AB900]
gi|260555652|ref|ZP_05827872.1| NADH dehydrogenase (quinone), D subunit [Acinetobacter baumannii
ATCC 19606]
gi|301347792|ref|ZP_07228533.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Acinetobacter baumannii AB056]
gi|301510627|ref|ZP_07235864.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Acinetobacter baumannii AB058]
gi|301595912|ref|ZP_07240920.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Acinetobacter baumannii AB059]
gi|332852145|ref|ZP_08433972.1| NADH dehydrogenase subunit D [Acinetobacter baumannii 6013150]
gi|332867544|ref|ZP_08437697.1| NADH dehydrogenase subunit D [Acinetobacter baumannii 6013113]
gi|332872606|ref|ZP_08440574.1| NADH dehydrogenase subunit D [Acinetobacter baumannii 6014059]
gi|218528028|sp|B2HU43|NUOCD_ACIBC RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|218528029|sp|B0VU54|NUOCD_ACIBS RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|218528030|sp|B0V899|NUOCD_ACIBY RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|218528062|sp|A3M2Q0|NUOCD_ACIBT RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|226737311|sp|B7GZB9|NUOCD_ACIB3 RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|226737312|sp|B7I741|NUOCD_ACIB5 RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|169149983|emb|CAM87877.1| NADH dehydrogenase I chain C,D [Acinetobacter baumannii AYE]
gi|169152971|emb|CAP02017.1| NADH dehydrogenase I chain C,D [Acinetobacter baumannii]
gi|183208625|gb|ACC56023.1| NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Acinetobacter
baumannii ACICU]
gi|193076536|gb|ABO11194.2| NADH dehydrogenase I chain CD [Acinetobacter baumannii ATCC 17978]
gi|213055698|gb|ACJ40600.1| NADH dehydrogenase I chain CD [Acinetobacter baumannii AB0057]
gi|213987654|gb|ACJ57953.1| NADH-quinone oxidoreductase subunit C/D [Acinetobacter baumannii
AB307-0294]
gi|260410563|gb|EEX03861.1| NADH dehydrogenase (quinone), D subunit [Acinetobacter baumannii
ATCC 19606]
gi|322506930|gb|ADX02384.1| nuoCD [Acinetobacter baumannii 1656-2]
gi|323516797|gb|ADX91178.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Acinetobacter baumannii TCDC-AB0715]
gi|332729517|gb|EGJ60856.1| NADH dehydrogenase subunit D [Acinetobacter baumannii 6013150]
gi|332733961|gb|EGJ65106.1| NADH dehydrogenase subunit D [Acinetobacter baumannii 6013113]
gi|332739135|gb|EGJ69994.1| NADH dehydrogenase subunit D [Acinetobacter baumannii 6014059]
Length = 595
Score = 369 bits (947), Expect = e-100, Method: Composition-based stats.
Identities = 146/393 (37%), Positives = 214/393 (54%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+N GP HP+AHG R++L+LDGE V+ P IG HRG EK+ E +T+ +P
Sbjct: 207 ADEDFMFLNLGPNHPSAHGAFRIVLQLDGEEVKDCVPDIGYHHRGVEKMAERQTWHSFIP 266
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ Q Y +AVE+L GI++P R Q+IRV+ +E+ RI +HLL T D
Sbjct: 267 YTDRVDYLGGCAQNMPYVMAVEQLAGIKVPERAQVIRVMLNELFRINNHLLYCGTAIQDA 326
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP + F +R+K+ E +G RMH A+FR GG D+P + + D P
Sbjct: 327 GGMTPVFYMFADRQKVYDIVEAITGYRMHPAWFRIGGTAHDLPNNWQKLVKELLDWMPKR 386
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
LN+ N +F R N+ + A WG +G +R +G +D+RK +PY Y
Sbjct: 387 LNEYYTAAFKNSVFIGRTRNVAQYDAKSALAWGVTGTGLRATGIDFDVRKYRPYSGYENF 446
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DF++P+ GD Y R LV E+ +S+KII+QC++ + GP A P VPP +
Sbjct: 447 DFEVPVEYEGDAYARVLVHFREIEQSLKIIKQCLDNM----PSGPYKADHPLAVPPPKDK 502
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ +E+LI HF + G +P GE E KG YL SD YR +IR P +
Sbjct: 503 TLQDIETLITHFLSVSWGPVMPAGEASFMTEVVKGASTYYLTSDKATMSYRTRIRTPTFT 562
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ + + G ++D+ L ++D+V +VDR
Sbjct: 563 HLQQIPSVINGSLVSDLIIYLATIDVVMADVDR 595
>gi|226944920|ref|YP_002799993.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Azotobacter vinelandii DJ]
gi|259514699|sp|C1DL16|NUOCD_AZOVD RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|226719847|gb|ACO79018.1| NADH-ubiquinone oxidoreductase, chain cd [Azotobacter vinelandii
DJ]
Length = 593
Score = 368 bits (946), Expect = e-100, Method: Composition-based stats.
Identities = 150/393 (38%), Positives = 224/393 (56%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +P
Sbjct: 205 EHEDFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPEIGYHHRGAEKMAERQSWHSFIP 264
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ + Y LAVEKL GI++P R +IRV+ +E RIL+HLL + T DV
Sbjct: 265 YTDRIDYLGGVMNNLPYVLAVEKLAGIKVPQRVDVIRVMMAEFFRILNHLLYLGTYIQDV 324
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+TP + F +R++ E +G R+H A++R GGV D+P + + + P
Sbjct: 325 GAMTPVFFTFTDRQRAYKVVEAITGFRLHPAWYRIGGVAHDLPRGWDALVKEFVEWMPKR 384
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L++ N I + R +++ A WG +G +R +G +DLRK++PY Y
Sbjct: 385 LDEYEKAALQNSILRGRTMDVARYDTRQALEWGVTGAGLRATGLDFDLRKARPYSGYENF 444
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+F++P+ +GD YDR +V++ EMR+S++II QC + GP A P PP +
Sbjct: 445 EFEVPLAHNGDAYDRCMVKLGEMRQSLRIIEQCRRNM----PEGPYKADHPLTTPPPKER 500
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ +E+LI HF + G +P E + +EA KG YL SDG YR +IR P YA
Sbjct: 501 TLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSYA 560
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ + + +G +AD+ A LGS+D V +VDR
Sbjct: 561 HLQQIPSVIRGSMVADLIAYLGSIDFVMADVDR 593
>gi|227112325|ref|ZP_03825981.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pectobacterium carotovorum subsp. brasiliensis PBR1692]
Length = 599
Score = 368 bits (946), Expect = e-100, Method: Composition-based stats.
Identities = 152/395 (38%), Positives = 226/395 (57%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP++HG R+IL+LDGE + P +G HRG EK+ E +++ +
Sbjct: 209 TENEDFMFLNLGPNHPSSHGAFRIILQLDGEEIVDCVPDVGYHHRGAEKMGERQSWHSYI 268
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GIE+P R + IRV+ SE+ RI SHLL ++T D
Sbjct: 269 PYTDRIEYLGGCVNEMPYVLAVEKLAGIEVPDRVKTIRVMLSELFRINSHLLYISTYIQD 328
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D PS
Sbjct: 329 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWERLLREFLDWMPS 388
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R + ++A WG +G +R +G +D+RK +PY Y
Sbjct: 389 RLDTYVKAALQNTILKGRTQGVAAYNAKEALDWGVTGAGLRATGIGFDVRKWRPYSGYEN 448
Query: 243 LDFDIPIGK-HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF++P+G DCY R ++++ E+R+S++I+ QC+ + GP A P PP +
Sbjct: 449 FDFEVPVGDGISDCYSRVMLKVEELRQSLRILDQCLKNM----PEGPFKADHPLTTPPPK 504
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +++LI+HF + G +P E + VEA KG YL SDGG YR +IR P
Sbjct: 505 ERTLQHIDTLINHFLQVSWGPVMPANESFQMVEATKGINSYYLTSDGGTMSYRTRIRTPS 564
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YAHLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 565 YAHLQQIPSVIRGCLVSDLIVYLGSIDFVMSDVDR 599
>gi|320161225|ref|YP_004174449.1| putative NADH-quinone oxidoreductase subunit C/D [Anaerolinea
thermophila UNI-1]
gi|319995078|dbj|BAJ63849.1| putative NADH-quinone oxidoreductase chain C/D [Anaerolinea
thermophila UNI-1]
Length = 581
Score = 368 bits (946), Expect = e-100, Method: Composition-based stats.
Identities = 149/396 (37%), Positives = 227/396 (57%), Gaps = 30/396 (7%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ + +N GPQHP+ HGV R+++ LDGE + + P G LHR EK+ E T+LQ +
Sbjct: 214 ELHTDRMIVNLGPQHPSTHGVFRMVVVLDGETIVDLKPVFGYLHRNHEKIGERCTWLQIM 273
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P+ DRLDY++ M+ YALAVE+L+GI+ P R + IRV+ +E+ RI+SHL+++ D
Sbjct: 274 PFTDRLDYISSMSNNFGYALAVERLMGIKPPERAEYIRVMMAELTRIVSHLVSIGFLLND 333
Query: 123 VGA-LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGC-WCDSF 180
+GA TP L+ EERE ++ +E SGSRM YFR GGV +D+P ++E + +
Sbjct: 334 LGAYFTPVLYALEERELILDIFEAVSGSRMMCNYFRFGGVARDLPEGVLEKVKDLVFERL 393
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P ++++ LT N I + R +G + E A +G ++R SG +D+R++ PY Y
Sbjct: 394 PRKIDELDRYLTRNEIVRVRTEGVGVLTAEQAIALSATGPVLRASGVPYDIRRADPYSIY 453
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+FD+ + HGD YDRYL+R+ E+R+S++I++Q + L
Sbjct: 454 DRFEFDVAVRYHGDVYDRYLLRLDEIRQSIRILKQVLKDLPEGPVQV------------- 500
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
VP GE Y VE PKGE G Y++S+G P+R +RAP
Sbjct: 501 ---------------GKPQWQVRVPAGESYGRVEGPKGELGYYIVSNGKPNPWRYHVRAP 545
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +L ++ + +G ++ADV ILGS+DIV GEVDR
Sbjct: 546 SFINLTSLAQMARGGKVADVVVILGSIDIVLGEVDR 581
>gi|296112933|ref|YP_003626871.1| NADH-quinone oxidoreductase subunit C/D [Moraxella catarrhalis RH4]
gi|295920626|gb|ADG60977.1| NADH-quinone oxidoreductase subunit C/D [Moraxella catarrhalis RH4]
Length = 582
Score = 368 bits (946), Expect = e-100, Method: Composition-based stats.
Identities = 149/393 (37%), Positives = 216/393 (54%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+AHG RL+L+LDGE + P IG HRG EK+ E +T+ +P
Sbjct: 194 RDEDFMFLNIGPNHPSAHGAFRLVLQLDGEEIVDCIPDIGYHHRGAEKMAERQTWHSFIP 253
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ + E Y +AVEKL GI P R +IR++ SE RI ++LL T D
Sbjct: 254 YTDRIDYLGGVMNELPYIMAVEKLAGITTPERANIIRIMMSEFFRITNNLLYWGTFIQDA 313
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP + F +R+K E +G RMH A+FR GG D+P + + D P
Sbjct: 314 GGMTPVFYMFADRQKAYDVIEAVTGYRMHPAWFRIGGTAHDLPNGWQRLVREFLDWMPKR 373
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ N + K R N+ + A WG +G +R +G +DLRK++PY Y
Sbjct: 374 IDEYVKATMTNSVLKGRTQNVAQYDAKHALAWGVTGAGLRATGIEFDLRKARPYLGYENF 433
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FD+P+ +GD YDR LV++ E+R+S++II QC+N + G A P VPP +
Sbjct: 434 EFDVPVFYNGDAYDRCLVKIEEIRQSLRIIEQCLNNM----PSGAYKAEHPLAVPPPKER 489
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ +E+LI+HF + G +P GE VE KG Y+ISD YR +IR P +A
Sbjct: 490 TLQDIETLINHFVSVSWGPVMPAGESACMVEGVKGLNSYYVISDKSTMSYRTRIRTPTFA 549
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ M + G ++D L S+DIV + DR
Sbjct: 550 HLQQMPSVINGSLVSDAIIYLASIDIVMADCDR 582
>gi|9719440|gb|AAF97800.1|AF281148_4 NADH dehydrogenase I subunit D [Pseudomonas fluorescens]
Length = 409
Score = 368 bits (946), Expect = e-100, Method: Composition-based stats.
Identities = 152/390 (38%), Positives = 226/390 (57%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +PY D
Sbjct: 24 DYMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMAERQSWHSFIPYTD 83
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+DY+ + Y L+VEKL GI++P + +IR++ +E RI SHLL + T DVGA+
Sbjct: 84 RIDYLGGVMNNLPYVLSVEKLAGIKVPEKVDVIRIMMAEFFRITSHLLFLGTYIQDVGAM 143
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP + F +R+K E +G R+H A++R GGV D+P + + + + P L++
Sbjct: 144 TPVFFTFTDRQKAYTVIEAITGFRLHPAWYRIGGVAHDLPRGWEKLVKDFVEWMPKRLDE 203
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ N I K R + + ++A WG +G +R +G +DLRK++PY Y +F+
Sbjct: 204 YTKAALQNSILKGRTIGVAAYNTKEALEWGVTGAGLRSTGCDFDLRKARPYSGYENFEFE 263
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+P+ +GD YDR +VR+ EMR+S+KII QC+ + GP A P PP + +
Sbjct: 264 VPLAANGDAYDRCMVRVEEMRQSIKIIDQCMRNM----PEGPYKADHPLTTPPPKERTLQ 319
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+E+LI HF + G +P E + +EA KG YL SDGG YR +IR P Y HLQ
Sbjct: 320 HIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGGTMSYRTRIRTPSYPHLQ 379
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + KG +AD+ A LGS+D V +VDR
Sbjct: 380 QIPSVIKGSMVADLIAYLGSIDFVMADVDR 409
>gi|156933124|ref|YP_001437040.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Cronobacter sakazakii ATCC BAA-894]
gi|218528045|sp|A7MH24|NUOCD_ENTS8 RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|156531378|gb|ABU76204.1| hypothetical protein ESA_00934 [Cronobacter sakazakii ATCC BAA-894]
Length = 603
Score = 368 bits (946), Expect = e-100, Method: Composition-based stats.
Identities = 146/391 (37%), Positives = 224/391 (57%), Gaps = 5/391 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +PY D
Sbjct: 217 DFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTD 276
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R++Y+ E Y LAVEKL GI++P R ++IRV+ SE+ RI SHLL ++T DVGA+
Sbjct: 277 RVEYLGGCVNEMPYVLAVEKLAGIQVPERVEVIRVMLSELFRINSHLLYISTFIQDVGAM 336
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP + F +R+K+ E +G RMH A+FR GGV D+P + + + P L+
Sbjct: 337 TPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLKEFLEWMPKRLDS 396
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
N I K R+ + ++A WG +G +R +G +D+RK++PY Y +F+
Sbjct: 397 YVKAALKNTILKGRSQGVAAYDAKEALAWGTTGAGLRATGIDFDVRKARPYSGYQNFEFE 456
Query: 247 IPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+P+ G DCY R ++++ E+R+S++I+ QC+ + GP A P PP +
Sbjct: 457 VPVGGGISDCYTRVMLKVEEVRQSLRILEQCLKNM----PEGPFKADHPLTTPPPKERTL 512
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
+ +E+LI HF + G +P E + +EA KG YL SDG YR ++R P + HL
Sbjct: 513 QHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPSFPHL 572
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Q + + +G ++D+ LGS+D V +VDR
Sbjct: 573 QQIPSVIRGSLVSDLIVYLGSIDFVMSDVDR 603
>gi|320095551|ref|ZP_08027215.1| NADH-quinone oxidoreductase subunit D [Actinomyces sp. oral taxon
178 str. F0338]
gi|319977529|gb|EFW09208.1| NADH-quinone oxidoreductase subunit D [Actinomyces sp. oral taxon
178 str. F0338]
Length = 449
Score = 368 bits (946), Expect = e-100, Method: Composition-based stats.
Identities = 176/414 (42%), Positives = 237/414 (57%), Gaps = 19/414 (4%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
++K S +N GP HP+ HGVLRLILELDGE V G LH G EK +E +T+ Q
Sbjct: 37 IEKLTSERIVVNLGPVHPSTHGVLRLILELDGEKVRETRVDTGYLHTGIEKNMEYRTWTQ 96
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTT 118
V Y R+DYVAP QE AY L VEKLLGI ++P R +IRV+ E+ RI SHL+ + +
Sbjct: 97 GVAYCTRMDYVAPFFQEAAYCLGVEKLLGITDDVPERASMIRVVMMELCRIASHLVAIGS 156
Query: 119 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
++GA T F RE+++ +ER +G RM+ Y RPGGV QDI I
Sbjct: 157 TGNEMGATTIMTIAFRGREEILRVFERVTGLRMNHEYIRPGGVIQDIGEGTTGYIRERLR 216
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
+ ++ D+L N IFK+R ++ + L G +G +R +G DLRK+QPY
Sbjct: 217 GVRRDIGELQDILQENPIFKKRLCDVAVMPLSALMALGHTGPGVRAAGLPLDLRKTQPYC 276
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
Y + +FD+P D Y+R +VR E ES++I+ Q + RL + P SDP+I
Sbjct: 277 GYEDYEFDVPTRDQSDVYNRTMVRFDECYESMRIVWQALERL-DACEGAPTMVSDPQIAW 335
Query: 299 PK----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGV 342
P R M SMESLIHHFKL TEG+HVP G+VY VE KG GV
Sbjct: 336 PARLSVASDGQGNSPDHVREIMGESMESLIHHFKLVTEGFHVPAGQVYQTVEHAKGILGV 395
Query: 343 YLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L+SDGG +P+R R P +A+LQ++ + +G QLADV L ++D V G VDR
Sbjct: 396 HLVSDGGTRPFRAHFRDPSFANLQSLAMMTEGGQLADVVVSLAAIDPVLGGVDR 449
>gi|50083951|ref|YP_045461.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Acinetobacter sp. ADP1]
gi|81393678|sp|Q6FE69|NUOCD_ACIAD RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|49529927|emb|CAG67639.1| NADH dehydrogenase I chain C,D [Acinetobacter sp. ADP1]
Length = 595
Score = 368 bits (945), Expect = e-100, Method: Composition-based stats.
Identities = 147/393 (37%), Positives = 214/393 (54%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+N GP HP+AHG R++L+LDGE V+ P IG HRG EK+ E +T+ +P
Sbjct: 207 ADEDFMFLNLGPNHPSAHGAFRVVLQLDGEEVKDCVPDIGYHHRGVEKMAERQTWHSFIP 266
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ Q Y +AVE+L GI++P R Q+IRV+ +E+ RI +HLL T D
Sbjct: 267 YTDRVDYLGGCAQNMPYVMAVEQLAGIKVPERAQVIRVMLNELFRINNHLLFCGTAIQDA 326
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP + F +R+K+ E +G RMH A+FR GG D+P + + + P
Sbjct: 327 GGMTPVFYMFADRQKVYDIVEAITGYRMHPAWFRIGGTAHDLPNNWHKLVKELLEWMPKR 386
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
LN+ N +F R N+ + A WG +G +R +G +D+RK +PY Y
Sbjct: 387 LNEYHTAALKNSVFIGRTRNVAQYDAKSALAWGVTGTGLRATGIDFDVRKYRPYSGYENF 446
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DFD+P+ GD Y R +V E+ ES+KII+QC++ + GP A P VPP +
Sbjct: 447 DFDVPLEYEGDAYARVMVHFREITESLKIIQQCLDNM----PSGPYKADHPLAVPPPKDK 502
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ +E+LI HF + G +P GE E KG YL SD YR +IR P +
Sbjct: 503 TLQDIETLITHFLSVSWGPVMPAGEASFMTEVVKGASTYYLTSDKSTMSYRTRIRTPTFT 562
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ M + G ++D+ L ++D+V +VDR
Sbjct: 563 HLQQMPSVINGSLVSDLIIYLATIDVVMADVDR 595
>gi|326577025|gb|EGE26920.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Moraxella
catarrhalis 101P30B1]
Length = 582
Score = 368 bits (945), Expect = e-100, Method: Composition-based stats.
Identities = 149/393 (37%), Positives = 216/393 (54%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+AHG RL+L+LDGE + P IG HRG EK+ E +T+ +P
Sbjct: 194 RDEDFMFLNIGPNHPSAHGAFRLVLQLDGEEIVDCIPDIGYHHRGAEKMAERQTWHSFIP 253
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ + E Y +AVEKL GI P R +IR++ SE RI ++LL T D
Sbjct: 254 YTDRIDYLGGVMNELPYIMAVEKLAGISTPERANVIRIMMSEFFRITNNLLYWGTFIQDA 313
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP + F +R+K E +G RMH A+FR GG D+P + + D P
Sbjct: 314 GGMTPVFYMFADRQKAYDVIEAVTGYRMHPAWFRIGGTAHDLPNGWQRLVREFLDWMPKR 373
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ N + K R N+ + A WG +G +R +G +DLRK++PY Y
Sbjct: 374 IDEYVKATMTNSVLKGRTQNVAQYDAKHALAWGVTGAGLRATGIEFDLRKARPYLGYENF 433
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FD+P+ +GD YDR LV++ E+R+S++II QC+N + G A P VPP +
Sbjct: 434 EFDVPVFYNGDAYDRCLVKIEEIRQSLRIIEQCLNNM----PSGAYKAEHPLAVPPPKER 489
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ +E+LI+HF + G +P GE VE KG Y+ISD YR +IR P +A
Sbjct: 490 TLQDIETLINHFVSVSWGPVMPAGESACMVEGVKGLNSYYVISDKSTMSYRTRIRTPTFA 549
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ M + G ++D L S+DIV + DR
Sbjct: 550 HLQQMPSVINGSLVSDAIIYLASIDIVMADCDR 582
>gi|15606009|ref|NP_213386.1| NADH dehydrogenase I chain D [Aquifex aeolicus VF5]
gi|81343428|sp|O66826|NUCD1_AQUAE RecName: Full=NADH-quinone oxidoreductase subunit C/D 1; AltName:
Full=NADH dehydrogenase I subunit C/D 1; AltName:
Full=NDH-1 subunit C/D 1
gi|2983187|gb|AAC06787.1| NADH dehydrogenase I chain D [Aquifex aeolicus VF5]
Length = 593
Score = 368 bits (945), Expect = e-99, Method: Composition-based stats.
Identities = 165/395 (41%), Positives = 244/395 (61%), Gaps = 17/395 (4%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
KK +N+GP HP HG + + +L+GE + + D +G LHRG EKL E + + Q +
Sbjct: 214 KKKAQIVLNWGPLHPGTHGTMWFLFDLEGERIVQTDVILGQLHRGVEKLAEHEMYNQFLV 273
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
Y DR+DY++ + A+ +A+E+L+GI ++P + + IR + SE+ RI SHLL + T A+
Sbjct: 274 YTDRMDYLSALCSNQAWVVAIERLMGIHDKVPPKAKYIRTMMSELQRINSHLLWLGTYAL 333
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D+GALT L+ F+EREK+M E +G+R+ +Y R GGV D+P +E I + FP
Sbjct: 334 DLGALTIFLYAFKEREKIMDIIEGITGARLTISYPRIGGVRMDLPEGALEVIKAFIKKFP 393
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
L D +LT NRI+ +RN +G + EDA+ G +G +IRGSG +D+RK +PY+ Y
Sbjct: 394 EELKDWETILTRNRIWLRRNKEVGIISKEDAYFHGVTGPVIRGSGIPYDIRKFEPYDAYD 453
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
E++FDIP+G+ GDCYDRYLVR+ EM++S++II QCV +L +S ++P +
Sbjct: 454 EVEFDIPVGEIGDCYDRYLVRIEEMKQSIRIIEQCVAKLEK------MSKNEPFFYEGEG 507
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+K S++ + G PVGE+Y++ E P+GE G Y++S GG PYR KIR P
Sbjct: 508 KKLKLSLDGI---------GVKAPVGEIYSSGENPRGELGFYVVSTGGTSPYRVKIRPPS 558
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Y +L L K +AD IL S+D V GE DR
Sbjct: 559 YYNLCIYPHLMKDRYVADAVTILASIDPVVGETDR 593
>gi|326567655|gb|EGE17763.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Moraxella
catarrhalis 12P80B1]
gi|326569466|gb|EGE19526.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Moraxella
catarrhalis BC8]
Length = 582
Score = 368 bits (945), Expect = e-99, Method: Composition-based stats.
Identities = 149/393 (37%), Positives = 216/393 (54%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+AHG RL+L+LDGE + P IG HRG EK+ E +T+ +P
Sbjct: 194 RDEDFMFLNIGPNHPSAHGAFRLVLQLDGEEIVDCIPDIGYHHRGAEKMAERQTWHSFIP 253
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ + E Y +AVEKL GI P R +IR++ SE RI ++LL T D
Sbjct: 254 YTDRIDYLGGVMNELPYIMAVEKLAGISTPERANVIRIMMSEFFRITNNLLYWGTFIQDA 313
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP + F +R+K E +G RMH A+FR GG D+P + + D P
Sbjct: 314 GGMTPVFYMFADRQKAYDVIEAVTGYRMHPAWFRIGGTAHDLPNGWQRLVREFLDWMPKR 373
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ N + K R N+ + A WG +G +R +G +DLRK++PY Y
Sbjct: 374 IDEYVKATMTNSVLKGRTQNVAQYDAKHALAWGVTGAGLRATGIEFDLRKARPYLGYENF 433
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FD+P+ +GD YDR LV++ E+R+S++II QC+N + G A P VPP +
Sbjct: 434 EFDVPVFYNGDAYDRCLVKIEEIRQSLRIIEQCLNNM----PSGAYKADHPLAVPPPKER 489
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ +E+LI+HF + G +P GE VE KG Y+ISD YR +IR P +A
Sbjct: 490 TLQDIETLINHFVSVSWGPVMPAGESACMVEGVKGLNSYYVISDKSTMSYRTRIRTPTFA 549
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ M + G ++D L S+DIV + DR
Sbjct: 550 HLQQMPSVINGSLVSDAIIYLASIDIVMADCDR 582
>gi|163781774|ref|ZP_02176774.1| NADH dehydrogenase I chain D [Hydrogenivirga sp. 128-5-R1-1]
gi|159882994|gb|EDP76498.1| NADH dehydrogenase I chain D [Hydrogenivirga sp. 128-5-R1-1]
Length = 593
Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats.
Identities = 170/395 (43%), Positives = 248/395 (62%), Gaps = 16/395 (4%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
KK +N+GP HP HG + + +L+GE + + D +G LHRG EKL E + + Q +
Sbjct: 213 KKKAQIVLNWGPLHPGTHGTMWFLFDLEGERIVQTDVILGQLHRGVEKLAENEMYNQFLV 272
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
Y DR+DY++ + ++ +A+E++LGIE +P + + IR + SE+ RI SHLL + T A+
Sbjct: 273 YTDRMDYLSALCSNQSWVVAIERMLGIEEDVPEKAKFIRTMMSELQRINSHLLWLGTYAL 332
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D+GALT L+ F+EREK+M E +G+R+ +Y R GGV D+P +E I + D F
Sbjct: 333 DLGALTIFLYAFKEREKIMDILEGITGARLTISYPRVGGVRMDLPEGALEVISAFVDKFV 392
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
L+D +LT NRI+ +RN +G + EDA+ +G +G +IRGSG +D+RK +PY+ Y+
Sbjct: 393 KELDDWERILTRNRIWLRRNKEVGIITPEDAYFYGVTGPVIRGSGIPYDMRKLEPYDAYA 452
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
E+DFD+P+G GDCYDRYLVR+ EMR+SV+IIRQCV++L K P A PK
Sbjct: 453 EVDFDVPVGDIGDCYDRYLVRIEEMRQSVRIIRQCVDKLKTIPKDAPFFAEVPK-----E 507
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+K +++ + G VP GE+Y++ E P+GE G Y+ S GG KPYR K+R P
Sbjct: 508 KKIKLTIDGI---------GLKVPTGEIYSSGENPRGELGFYVFSMGGVKPYRVKVRPPS 558
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Y +L +L K +AD IL S+D V GE DR
Sbjct: 559 YYNLSIYPYLMKDRVIADAVTILASIDPVVGETDR 593
>gi|326574006|gb|EGE23955.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Moraxella
catarrhalis CO72]
Length = 582
Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats.
Identities = 149/393 (37%), Positives = 216/393 (54%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+AHG RL+L+LDGE + P IG HRG EK+ E +T+ +P
Sbjct: 194 RDEDFMFLNIGPNHPSAHGAFRLVLQLDGEEIVDCIPDIGYHHRGAEKMAERQTWHSFIP 253
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ + E Y +AVEKL GI P R +IR++ SE RI ++LL T D
Sbjct: 254 YTDRIDYLGGVMNELPYIMAVEKLAGISTPERANIIRIMMSEFFRITNNLLYWGTFIQDA 313
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP + F +R+K E +G RMH A+FR GG D+P + + D P
Sbjct: 314 GGMTPVFYMFADRQKAYDVIEAVTGYRMHPAWFRIGGTAHDLPNGWQRLVREFLDWMPKR 373
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ N + K R N+ + A WG +G +R +G +DLRK++PY Y
Sbjct: 374 IDEYVKATMTNSVLKGRTQNVAQYDAKHALAWGVTGAGLRATGIEFDLRKARPYLGYENF 433
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FD+P+ +GD YDR LV++ E+R+S++II QC+N + G A P VPP +
Sbjct: 434 EFDVPVFYNGDAYDRCLVKIEEIRQSLRIIEQCLNNM----PSGAYKADHPLAVPPPKDK 489
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ +E+LI+HF + G +P GE VE KG Y+ISD YR +IR P +A
Sbjct: 490 TLKDIETLINHFVSVSWGPVMPAGESACMVEGVKGLNSYYVISDKSTMSYRTRIRTPTFA 549
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ M + G ++D L S+DIV + DR
Sbjct: 550 HLQQMPSVINGSLVSDAIIYLASIDIVMADCDR 582
>gi|269218340|ref|ZP_06162194.1| NADH dehydrogenase, D subunit [Actinomyces sp. oral taxon 848 str.
F0332]
gi|269212199|gb|EEZ78539.1| NADH dehydrogenase, D subunit [Actinomyces sp. oral taxon 848 str.
F0332]
Length = 449
Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats.
Identities = 162/408 (39%), Positives = 227/408 (55%), Gaps = 19/408 (4%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GP HP+ HGV RL+LELDGE V + G LH G EK +E +T+ Q V Y
Sbjct: 43 ERIVVNLGPVHPSTHGVYRLLLELDGEYVREIRGATGFLHTGIEKNMEYRTWTQGVAYVT 102
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
R+DYVA QE Y +AVEKLLGIE +P R +IRVL E+ RI SHL+ + + ++G
Sbjct: 103 RMDYVASFFQEVGYCMAVEKLLGIEEQVPRRANVIRVLLMELQRIASHLVAIGSSLNELG 162
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A T F RE ++ +ER SG RM+ + RPGGV +D+P + I
Sbjct: 163 ATTMMTIAFRTREDILRIFERISGLRMNYEFVRPGGVLEDVPEGITAYIRELLPDVRKGT 222
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+++ ++ N IFK R ++G + L G +G ++ +G WDLRKSQPY Y + +
Sbjct: 223 SEMETIVAQNPIFKARFKDVGVLSLSALMALGQTGPAVKAAGLPWDLRKSQPYCGYEDYE 282
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK---- 300
F++P+ D Y+R +VR E +S++I+ Q +++L PV D KI P
Sbjct: 283 FEVPVYDKSDAYNRAMVRFDECYQSLRIVYQALDKLDATEGE-PVMVEDKKIAWPARLSI 341
Query: 301 ------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG 348
R M SMESLIHHFKL TEG+ VP G+ Y+ VE KG G +L+S G
Sbjct: 342 STDGQGTAPAHVREIMTESMESLIHHFKLVTEGFRVPAGQAYSIVEHAKGVLGCHLVSSG 401
Query: 349 GNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G +PYR + PG+ +LQ + + +G LAD L ++D V G VDR
Sbjct: 402 GTRPYRAHVSDPGFRNLQGLSMMAEGGMLADAIVCLAAIDPVMGGVDR 449
>gi|218534459|sp|Q8KEC0|NUOD_CHLTE RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
Length = 400
Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats.
Identities = 164/400 (41%), Positives = 226/400 (56%), Gaps = 32/400 (8%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ GPQHP+ HGVLRL DGE+V +P++G LHR EK E + V
Sbjct: 27 DLDTEHMVLSMGPQHPSTHGVLRLECITDGEVVVEAEPYLGYLHRCFEKHCEKIDYPAIV 86
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR+DY+A MN E AY + VEKLL IEIP R + IRV+ +E+ RI SHL+ + T A+D
Sbjct: 87 PYTDRMDYLAGMNNELAYCITVEKLLDIEIPRRVEFIRVIVAELNRIASHLVAIGTYAID 146
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA TP L+ F +RE +M E SG+RM Y GG+ D+P + + + F
Sbjct: 147 LGAFTPFLFCFRDREHIMSLLEWISGARMLYNYIWIGGLAYDVPADFKTRVAEFVTYFRP 206
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++ LLT N IF +R +IG + + A +G+SG M+RGSG WDLR++ PY Y E
Sbjct: 207 KAKELYQLLTENEIFVKRTYDIGIMPADVAINYGWSGPMLRGSGVKWDLRRNDPYSVYPE 266
Query: 243 LDFDIPIGK-----HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIV 297
LDFD+P+ GDC R+LVR +EM ES+KII QC++++ + + KI
Sbjct: 267 LDFDVPVPDGKFSVVGDCLSRHLVRALEMEESLKIIEQCLDKMPEEPNFNSRALIPKKI- 325
Query: 298 PPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG-GNKPYRCK 356
GEVY E P+GE G Y++SDG P RCK
Sbjct: 326 -------------------------RPKAGEVYGRAENPRGELGYYIVSDGKSTSPVRCK 360
Query: 357 IRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
R+ + +L AM+ L KG + D+ AI+GS+DIV GEVDR
Sbjct: 361 ARSSCFVNLSAMKDLSKGQLIPDLVAIIGSIDIVLGEVDR 400
>gi|50121949|ref|YP_051116.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pectobacterium atrosepticum SCRI1043]
gi|81644465|sp|Q6D2R9|NUOCD_ERWCT RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|49612475|emb|CAG75925.1| NADH-quinone oxidoreductase chain C/D [Pectobacterium atrosepticum
SCRI1043]
Length = 599
Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats.
Identities = 151/395 (38%), Positives = 226/395 (57%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP++HG R+IL+LDGE + P +G HRG EK+ E +++ +
Sbjct: 209 TENEDFMFLNLGPNHPSSHGAFRIILQLDGEEIVDCVPDVGYHHRGAEKMGERQSWHSYI 268
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GIE+P R + IRV+ SE+ RI SHLL ++T D
Sbjct: 269 PYTDRIEYLGGCVNEMPYVLAVEKLAGIEVPDRVKTIRVMLSELFRINSHLLYISTYIQD 328
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P+
Sbjct: 329 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWERLLREFLDWMPA 388
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R + ++A WG +G +R +G +D+RK +PY Y
Sbjct: 389 RLDTYVKSALQNTILKGRTQGVAAYNAKEALEWGVTGAGLRATGIGFDVRKWRPYSGYEN 448
Query: 243 LDFDIPIGK-HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF++P+G DCY R ++++ E+R+S++I+ QC+ + GP A P PP +
Sbjct: 449 FDFEVPVGDGISDCYSRVMLKVEELRQSLRILDQCLKNM----PEGPFKADHPLTTPPPK 504
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +++LI+HF + G +P E + VEA KG YL SDGG YR +IR P
Sbjct: 505 ERTLQHIDTLINHFLQVSWGPVMPANESFQMVEATKGINSYYLTSDGGTMSYRTRIRTPS 564
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YAHLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 565 YAHLQQIPSVIRGCLVSDLIVYLGSIDFVMSDVDR 599
>gi|253689146|ref|YP_003018336.1| NADH dehydrogenase I, D subunit [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|259514705|sp|C6DA44|NUOCD_PECCP RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|251755724|gb|ACT13800.1| NADH dehydrogenase I, D subunit [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 599
Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats.
Identities = 152/395 (38%), Positives = 226/395 (57%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP++HG R+IL+LDGE + P +G HRG EK+ E +++ +
Sbjct: 209 TENEDFMFLNLGPNHPSSHGAFRIILQLDGEEIVDCVPDVGYHHRGAEKMGERQSWHSYI 268
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GIE+P R + IRV+ SE+ RI SHLL ++T D
Sbjct: 269 PYTDRIEYLGGCVNEMPYVLAVEKLAGIEVPDRVKTIRVMLSELFRINSHLLYISTYIQD 328
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D PS
Sbjct: 329 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWERLLREFLDWMPS 388
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R + ++A WG +G +R +G +D+RK +PY Y
Sbjct: 389 RLDTYVKAALQNTILKGRTQGVAAYNAKEALDWGVTGAGLRATGIGFDVRKWRPYSGYEN 448
Query: 243 LDFDIPIGK-HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF++P+G DCY R ++++ E+R+S++I+ QC+ + GP A P PP +
Sbjct: 449 FDFEVPVGDGISDCYSRVMLKVEELRQSLRILDQCLKNM----PEGPFKADHPLTTPPPK 504
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +++LI+HF + G +P E + VEA KG YL SDGG YR +IR P
Sbjct: 505 ERTLQHIDTLINHFLQVSWGPVMPANESFQMVEATKGINSYYLTSDGGTMSYRTRIRTPS 564
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YAHLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 565 YAHLQQIPSVIRGCLVSDLIVYLGSIDFVMSDVDR 599
>gi|299771417|ref|YP_003733443.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Acinetobacter sp. DR1]
gi|298701505|gb|ADI92070.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Acinetobacter sp. DR1]
Length = 595
Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats.
Identities = 147/393 (37%), Positives = 214/393 (54%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+N GP HP+AHG R++L+LDGE V+ P IG HRG EK+ E +T+ +P
Sbjct: 207 ADEDFMFLNLGPNHPSAHGAFRVVLQLDGEEVKDCVPDIGYHHRGVEKMAERQTWHSFIP 266
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ Q Y +AVE++ GI++P R Q+IRV+ +E+ RI +HLL T D
Sbjct: 267 YTDRVDYLGGCAQNMPYVMAVEQMAGIKVPERAQVIRVMLNELFRINNHLLFCGTAIQDA 326
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP + F +R+K+ E +G RMH A+FR GG D+P + + + P
Sbjct: 327 GGMTPVFYMFADRQKVYDIVEAITGYRMHPAWFRIGGTAHDLPNNWQKLVKELLEWMPKR 386
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
LN+ N +F R N+ + A WG +G +R +G +D+RK +PY Y
Sbjct: 387 LNEYYTAALKNSVFIGRTRNVAQYDAKSALAWGVTGTGLRATGIDFDVRKYRPYSGYENF 446
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DFD+P+ GD Y R LV E+ ES+KII+QC++ + GP A P VPP +
Sbjct: 447 DFDVPVEYEGDAYARVLVHFREITESLKIIQQCLDNM----PSGPYKADHPLAVPPPKDK 502
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ +E+LI HF + G +P GE E KG YL SD YR +IR P +
Sbjct: 503 TLQDIETLITHFLSVSWGPVMPAGESSFMTEVVKGASTYYLTSDKATMSYRTRIRTPTFT 562
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ M + G ++D+ L ++D+V +VDR
Sbjct: 563 HLQQMPSVINGSLVSDLIIYLATIDVVMADVDR 595
>gi|310768163|gb|ADP13113.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Erwinia
sp. Ejp617]
Length = 616
Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats.
Identities = 149/395 (37%), Positives = 219/395 (55%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +
Sbjct: 226 TANEDFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 285
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI++P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 286 PYTDRIEYLGGCVNEMPYVLAVEKLAGIKVPERVDVIRVMLSELFRINSHLLYISTFIQD 345
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA++P + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 346 VGAMSPVFFAFTDRQKIYDVVEAITGFRMHPAWFRIGGVAHDLPKGWERLLREFLDWMPK 405
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L N + R + +E+A WG +G +R +G +D+RK +PY Y
Sbjct: 406 RLKAYEQTALKNSVLIGRAKGVSAYNMEEALAWGTTGAGLRATGLDFDVRKWRPYSGYEN 465
Query: 243 LDFDIPIGKHGDC-YDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF++PIG C Y R +++M EMR+S++I+ QC+N + GP A P PP +
Sbjct: 466 FDFEVPIGDGVSCAYSRVMLKMEEMRQSMRILEQCLNNMPA----GPFKADHPLTTPPPK 521
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + +EA KG YL SDG YR ++R P
Sbjct: 522 ERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPS 581
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ HLQ + + G ++D+ LGS+D V +VDR
Sbjct: 582 FPHLQQIPSVINGSLVSDLIVYLGSIDFVMSDVDR 616
>gi|227326165|ref|ZP_03830189.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pectobacterium carotovorum subsp. carotovorum WPP14]
Length = 599
Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats.
Identities = 151/395 (38%), Positives = 226/395 (57%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP++HG R+IL+LDGE + P +G HRG EK+ E +++ +
Sbjct: 209 TENEDFMFLNLGPNHPSSHGAFRIILQLDGEEIVDCVPDVGYHHRGAEKMGERQSWHSYI 268
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GIE+P R + IRV+ SE+ RI SHLL ++T D
Sbjct: 269 PYTDRIEYLGGCVNEMPYVLAVEKLAGIEVPDRVKTIRVMLSELFRINSHLLYISTYIQD 328
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P+
Sbjct: 329 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWERLLREFLDWMPA 388
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R + ++A WG +G +R +G +D+RK +PY Y
Sbjct: 389 RLDTYVKSALQNTILKGRTQGVAAYNAKEALDWGVTGAGLRATGIGFDVRKWRPYSGYEN 448
Query: 243 LDFDIPIGK-HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF++P+G DCY R ++++ E+R+S++I+ QC+ + GP A P PP +
Sbjct: 449 FDFEVPVGDGISDCYSRVMLKVEELRQSLRILDQCLKNM----PEGPFKADHPLTTPPPK 504
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +++LI+HF + G +P E + VEA KG YL SDGG YR +IR P
Sbjct: 505 ERTLQHIDTLINHFLQVSWGPVMPANESFQMVEATKGINSYYLTSDGGTMSYRTRIRTPS 564
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YAHLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 565 YAHLQQIPSVIRGCLVSDLIVYLGSIDFVMSDVDR 599
>gi|328755064|gb|EGF68680.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL020PA1]
Length = 433
Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats.
Identities = 168/412 (40%), Positives = 236/412 (57%), Gaps = 19/412 (4%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++ + +NFGP HP+ HGV+RLI+ELDGE V + IG LH G EK +E +T+ Q V
Sbjct: 23 ERGDETVVVNFGPSHPSTHGVMRLIIELDGESVSDLRVGIGFLHTGIEKNMEFRTWTQGV 82
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R +YVA E Y LAVEKLLGI ++P R +++RV+ +E+ RI SHL+ V T
Sbjct: 83 TFMTRCNYVANFFNELVYCLAVEKLLGITDDVPERARVLRVMITELNRISSHLIAVGTGG 142
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+++GA + G ERE ++ F + +G RM+ A+ RPGGV D+P ++ +
Sbjct: 143 LELGASSVAEVGLREREIILEFNQAVTGLRMNNAWIRPGGVATDLPETGLDQLRDLIKRM 202
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L +I N IFK R IG L G +G +R +G WDLRK+QPY Y
Sbjct: 203 EKYLPEIGQFCNENPIFKARTQGIGYADLSTCMALGVTGPALRATGLPWDLRKTQPYCDY 262
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
DFD+ DCY R+ +R+ EM +SV+I++QC+ RL DP+I P
Sbjct: 263 DTYDFDVATWDTCDCYGRFRIRLEEMDQSVRILKQCLKRLEDTQGDRH-MVEDPRIAWPA 321
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
R M SME+LIHHFK+ TEG+ VP G+VY A+E GE G +L
Sbjct: 322 ELALGPDGQGNSNEHIRHIMGESMEALIHHFKIVTEGFRVPAGQVYQAIEGAGGELGCHL 381
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +PYR +R PG+ ++Q++ +C+G L+DV L SLD V G VDR
Sbjct: 382 VSDGGVRPYRSHLRDPGFVNVQSLPAMCEGGMLSDVVPSLASLDPVMGGVDR 433
>gi|293609137|ref|ZP_06691440.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292829710|gb|EFF88072.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|325121083|gb|ADY80606.1| NADH dehydrogenase I chain C,D [Acinetobacter calcoaceticus PHEA-2]
Length = 595
Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats.
Identities = 147/393 (37%), Positives = 214/393 (54%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+N GP HP+AHG R++L+LDGE V+ P IG HRG EK+ E +T+ +P
Sbjct: 207 ADEDFMFLNLGPNHPSAHGAFRVVLQLDGEEVKDCVPDIGYHHRGVEKMAERQTWHSFIP 266
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ Q Y +AVE++ GI++P R Q+IRV+ +E+ RI +HLL T D
Sbjct: 267 YTDRVDYLGGCAQNMPYVMAVEQMAGIKVPERAQVIRVMLNELFRINNHLLFCGTAIQDA 326
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP + F +R+K+ E +G RMH A+FR GG D+P + + + P
Sbjct: 327 GGMTPVFYMFADRQKVYDIVEAITGYRMHPAWFRIGGTAHDLPNNWQKLVKELLEWMPKR 386
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
LN+ N +F R N+ + A WG +G +R +G +D+RK +PY Y
Sbjct: 387 LNEYYTAALKNSVFIGRTRNVAQYDAKSALAWGVTGTGLRATGIDFDVRKYRPYSGYENF 446
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DFD+P+ GD Y R LV E+ ES+KII+QC++ + GP A P VPP +
Sbjct: 447 DFDVPVEYEGDAYARVLVHFREITESLKIIQQCLDNM----PSGPYKADHPLAVPPPKDK 502
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ +E+LI HF + G +P GE E KG YL SD YR +IR P +
Sbjct: 503 TLQDIETLITHFLSVSWGPVMPAGESSFMTEVVKGASTYYLTSDKATMSYRTRIRTPTFT 562
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ M + G ++D+ L ++D+V +VDR
Sbjct: 563 HLQQMPSVINGSLVSDLIIYLATIDVVMADVDR 595
>gi|329296021|ref|ZP_08253357.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Plautia
stali symbiont]
Length = 599
Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats.
Identities = 144/395 (36%), Positives = 218/395 (55%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+N GP HP+AHG R+IL+LDGE + P +G HRG EK+ E +++ +
Sbjct: 209 TTNEDFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDVGYHHRGAEKMGERQSWHSYI 268
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 269 PYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQD 328
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 329 VGAMTPVFFAFTDRQKIYDVVEAITGFRMHPAWFRIGGVAHDLPKGWERLLREFLDWMPK 388
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L + N + R+ + +++A WG +G +R +G +D+RK +P+ Y
Sbjct: 389 RLKEYDKAALRNTVLMGRSQGVAAYNMDEALAWGTTGAGLRATGLDFDVRKWRPHSGYEN 448
Query: 243 LDFDIPIGK-HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF++P+G D Y R ++M EM +S++I+ QC+ + GP A P PP +
Sbjct: 449 FDFEVPVGAGISDAYTRVQLKMEEMWQSLRILEQCLKNM----PEGPFKADHPLTTPPPK 504
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + +EA KG YL SDG YR ++R P
Sbjct: 505 ERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPS 564
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ HLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 565 FPHLQQIPSVIRGSLVSDLIVYLGSIDFVMSDVDR 599
>gi|89095636|ref|ZP_01168530.1| NADH dehydrogenase subunit D [Bacillus sp. NRRL B-14911]
gi|89089382|gb|EAR68489.1| NADH dehydrogenase subunit D [Bacillus sp. NRRL B-14911]
Length = 366
Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats.
Identities = 151/391 (38%), Positives = 217/391 (55%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RL+L++DGEI++ P IG LHRGTEKL E + Q +PY
Sbjct: 3 RTEEMLLNVGPQHPSTHGVFRLVLKIDGEIIKEAKPVIGYLHRGTEKLAENLQYTQIIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY+A M + AVE ++ IEIP R + +RV+ E+GRI SHL+ T +D+G
Sbjct: 63 TDRMDYLAAMTNNYVIVHAVETMMNIEIPERAEYLRVISMELGRIASHLVWWGTYLLDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++P L+ F ERE ++ G+R+ Y R GGV D P +E + + L
Sbjct: 123 AVSPFLYAFREREMIINMLNELCGARLTFNYMRVGGVKWDAPEGWIEKVKEFVPYMREQL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
DL+TGN IF R +GT E+A + SG +R +G WDLRK +PY Y
Sbjct: 183 KGYHDLVTGNEIFMNRVKGVGTYTKEEALSYSLSGANLRCTGVKWDLRKDEPYSIYDRFQ 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FD+P+ + GD + RY R+ E+ ES+KI+ Q + G A PKI+
Sbjct: 243 FDVPVREGGDAWARYHCRLEEIEESLKILEQAAEQFPQ---AGDFIAKVPKII------- 292
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE + +E+P+GE G Y+ S+G +PYR K R P + +
Sbjct: 293 ------------------KAPKGEAFVRIESPRGEIGCYIASNGKKEPYRLKFRRPSFYN 334
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L +G +A++ AILG++DIV GEVD
Sbjct: 335 LQILPKLLEGENIANLIAILGAIDIVLGEVD 365
>gi|326567953|gb|EGE18050.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Moraxella
catarrhalis BC1]
Length = 582
Score = 367 bits (943), Expect = 2e-99, Method: Composition-based stats.
Identities = 149/393 (37%), Positives = 216/393 (54%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+AHG RL+L+LDGE + P IG HRG EK+ E +T+ +P
Sbjct: 194 RDEDFMFLNIGPNHPSAHGAFRLVLQLDGEEIVDCIPDIGYHHRGAEKMAERQTWHSFIP 253
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ + E Y +AVEKL GI P R +IR++ SE RI ++LL T D
Sbjct: 254 YTDRIDYLGGVMNELPYIMAVEKLAGIITPERANIIRIMMSEFFRITNNLLYWGTFIQDA 313
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP + F +R+K E +G RMH A+FR GG D+P + + D P
Sbjct: 314 GGMTPVFYMFADRQKAYDVIEAVTGYRMHPAWFRIGGTAHDLPNGWQRLVREFLDWMPKR 373
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ N + K R N+ + A WG +G +R +G +DLRK++PY Y
Sbjct: 374 IDEYVKATMTNSVLKGRTQNVAQYDAKHALAWGVTGAGLRATGIEFDLRKARPYLGYENF 433
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FD+P+ +GD YDR LV++ E+R+S++II QC+N + G A P VPP +
Sbjct: 434 EFDVPVFYNGDAYDRCLVKIEEIRQSLRIIEQCLNNM----PSGAYKAEHPLAVPPPKER 489
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ +E+LI+HF + G +P GE VE KG Y+ISD YR +IR P +A
Sbjct: 490 TLQDIETLINHFVSVSWGPVMPAGESACMVEGVKGLNSYYVISDKSTMSYRTRIRTPTFA 549
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ M + G ++D L S+DIV + DR
Sbjct: 550 HLQQMPSVINGSLVSDAIIYLASIDIVMADCDR 582
>gi|193216259|ref|YP_001997458.1| NADH dehydrogenase (quinone) [Chloroherpeton thalassium ATCC 35110]
gi|218534402|sp|B3QY45|NUOD2_CHLT3 RecName: Full=NADH-quinone oxidoreductase subunit D 2; AltName:
Full=NADH dehydrogenase I subunit D 2; AltName:
Full=NDH-1 subunit D 2
gi|193089736|gb|ACF15011.1| NADH dehydrogenase (quinone) [Chloroherpeton thalassium ATCC 35110]
Length = 399
Score = 367 bits (943), Expect = 2e-99, Method: Composition-based stats.
Identities = 168/400 (42%), Positives = 225/400 (56%), Gaps = 32/400 (8%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GPQHP+ HGVLR+ L DGE+V + H+G LHR EK E + V
Sbjct: 26 DLDTEYMIVNMGPQHPSTHGVLRVELLTDGEVVVKATAHLGYLHRCFEKHAEYVDYPGIV 85
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR+DY+A MN + AY +AVEKLLGIEIP R + +RV+ +E+ RI SHL+ + T A+D
Sbjct: 86 PYVDRMDYLASMNNDFAYCVAVEKLLGIEIPRRIEFMRVIVAELNRIASHLVAIGTYAID 145
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA TP L+ F +RE L+ E G+RM Y GGV D P + E + + F
Sbjct: 146 LGAFTPFLFCFRDREHLLNLLEWICGARMLYNYIWVGGVSHDFPAKFEERVMEFVRYFKP 205
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++ LLT N IF QR +IG + + A G SG M+RGSG WDLR+ PY Y E
Sbjct: 206 QARELYQLLTENEIFVQRTKDIGLLPADVAINAGASGPMLRGSGVKWDLRRDDPYSIYPE 265
Query: 243 LDFDIPIGK-----HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIV 297
L+FD+ + GDC R+LVR +E+ ES+K+I QC++ + DP
Sbjct: 266 LEFDVAVPDGKASVIGDCLSRHLVRAIEIDESLKMIEQCIDMMPKDPN------FDPHAA 319
Query: 298 PPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGN-KPYRCK 356
PKR GEVYA EAP+GE G Y+ISDG P+RCK
Sbjct: 320 VPKR--------------------VKPKAGEVYARGEAPRGELGFYIISDGKGTTPFRCK 359
Query: 357 IRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
R+ + +L + + KG +ADV AI+GS+DIV GEVDR
Sbjct: 360 ARSSCFVNLSLLPEMAKGQYIADVVAIIGSVDIVLGEVDR 399
>gi|227488705|ref|ZP_03919021.1| NADH dehydrogenase subunit D [Corynebacterium glucuronolyticum ATCC
51867]
gi|227542296|ref|ZP_03972345.1| NADH dehydrogenase subunit D [Corynebacterium glucuronolyticum ATCC
51866]
gi|227091366|gb|EEI26678.1| NADH dehydrogenase subunit D [Corynebacterium glucuronolyticum ATCC
51867]
gi|227181896|gb|EEI62868.1| NADH dehydrogenase subunit D [Corynebacterium glucuronolyticum ATCC
51866]
Length = 454
Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats.
Identities = 173/412 (41%), Positives = 238/412 (57%), Gaps = 19/412 (4%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ IN GP HP+ HGV+RL LE+DG+IV + P IG LH G EK E +T+ Q
Sbjct: 44 RDRADRMIINMGPAHPSTHGVMRLCLEMDGDIVTNLRPAIGYLHTGIEKTAEYRTWTQGS 103
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
R+DYVAPM E Y++AVEK++GI IP R Q+IRVL E+ RI SHL+ + T
Sbjct: 104 ALVTRMDYVAPMFNECVYSMAVEKVMGITDAIPERAQIIRVLCLELCRIASHLVALATGG 163
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
++G T G ERE+++ F+E SG RM+ AY RPGGV D+P + ++ + D
Sbjct: 164 NELGGTTLLTNGLRERERILDFFECISGLRMNHAYIRPGGVAGDLPEDGMKILDTCLDWL 223
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ D S +L N +FK+R V++ + L G +G +R +G WDLRK++P Y
Sbjct: 224 EKRMPDFSKMLNDNPVFKKRFVDVAYLDLTGCMALGITGPRLRAAGLQWDLRKAEPCLGY 283
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
DFD+P+ D Y Y VR+ EM ES+KI RQC +RL P DPKI P
Sbjct: 284 ETYDFDVPVWDTCDAYGAYRVRLAEMFESLKIARQCRDRLAQTEGQ-PFMVKDPKIARPA 342
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
+ M + MESLIHHFKL TEG+ VP G+ Y +E+PKG G ++
Sbjct: 343 YLKVYKDGQGNSYEHVKNIMGQDMESLIHHFKLVTEGFKVPAGQAYVELESPKGIIGCHV 402
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG PYR +R P + +QA+ LC+G L+DV + S+D V G VDR
Sbjct: 403 VSDGGTHPYRVHMRDPAFHAIQALPALCEGGTLSDVVVAISSIDPVLGGVDR 454
>gi|33519942|ref|NP_878774.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Candidatus
Blochmannia floridanus]
gi|81666913|sp|Q7VRV4|NUOCD_BLOFL RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|33504288|emb|CAD83180.1| NADH dehydrogenase I chain C; chain D [Candidatus Blochmannia
floridanus]
Length = 596
Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats.
Identities = 159/396 (40%), Positives = 228/396 (57%), Gaps = 5/396 (1%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ K +N GP HP+ HGV R+IL+L GE + P IG HRG EK+ E +++
Sbjct: 205 NNKHEDFMFLNLGPNHPSVHGVFRIILQLSGEEIIDCVPDIGYHHRGAEKMGERQSWHSY 264
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+PY DR++Y+ E Y LAVEKL GI +P R ++IR++ SE+ RI SHLL V+T
Sbjct: 265 IPYTDRVEYLGGCINEMPYVLAVEKLAGIVVPDRAKIIRIMLSELFRINSHLLYVSTYLQ 324
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
DVG +TP F +R+K+ E +G+RMH A+FR GGV D+P + + D P
Sbjct: 325 DVGVMTPVFLAFTDRQKIYDVIESITGARMHPAWFRIGGVADDLPLNWSDLLKQCLDWLP 384
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+ D+ N IFK+R IG+ ++A WG +G +R +G +DLRKS+PY Y
Sbjct: 385 KRIAFYIDIALKNSIFKKRTCGIGSYGAKEALSWGVTGSGLRATGIEFDLRKSRPYSGYE 444
Query: 242 ELDFDIPIGKH-GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
DFDIPIG DCY+R ++++ EM +S++I+ QC+ + GPV + P PP
Sbjct: 445 NFDFDIPIGNGLSDCYNRLVLKIEEMYQSIRILNQCLKNM----PTGPVKSDHPLTTPPM 500
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ + +E+LI HF + G +P E VEA KG YLISDG YR +IR P
Sbjct: 501 KKYALKHIETLITHFLQVSWGPVIPPNESLQMVEATKGINSYYLISDGNTMSYRTRIRTP 560
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ HLQ + + +G + D+ A LGS+D V +VDR
Sbjct: 561 SFPHLQQIPSVIRGSLIPDLIAYLGSIDFVMSDVDR 596
>gi|326577450|gb|EGE27334.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Moraxella
catarrhalis O35E]
Length = 582
Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats.
Identities = 149/393 (37%), Positives = 216/393 (54%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+AHG RL+L+LDGE + P IG HRG EK+ E +T+ +P
Sbjct: 194 RDEDFMFLNIGPNHPSAHGAFRLVLQLDGEEIVDCIPDIGYHHRGAEKMAERQTWHSFIP 253
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ + E Y +AVEKL GI P R +IR++ SE RI ++LL T D
Sbjct: 254 YTDRIDYLGGVMNELPYIMAVEKLAGIITPERANIIRIMMSEFFRITNNLLYWGTFIQDA 313
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP + F +R+K E +G RMH A+FR GG D+P + + D P
Sbjct: 314 GGMTPVFYMFADRQKAYDVIEAVTGYRMHPAWFRIGGTAHDLPNGWQRLVREFLDWMPKR 373
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ N + K R N+ + A WG +G +R +G +DLRK++PY Y
Sbjct: 374 IDEYVKATMTNSVLKGRTQNVAQYDAKHALAWGVTGAGLRATGIEFDLRKARPYLGYENF 433
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FD+P+ +GD YDR LV++ E+R+S++II QC+N + G A P VPP +
Sbjct: 434 EFDVPVFYNGDAYDRCLVKIEEIRQSLRIIEQCLNNM----PSGAYKAEHPLAVPPPKER 489
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ +E+LI+HF + G +P GE VE KG Y+ISD YR +IR P +A
Sbjct: 490 TLQDIETLINHFVSVSWGPVMPAGESACMVEGVKGLNSYYVISDKSTMSYRTRIRTPTFA 549
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ M + G ++D L S+DIV + DR
Sbjct: 550 HLQQMPSVINGSLVSDAIIYLASIDIVMADCDR 582
>gi|194333678|ref|YP_002015538.1| NADH dehydrogenase (quinone) [Prosthecochloris aestuarii DSM 271]
gi|218534445|sp|B4S754|NUOD_PROA2 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|194311496|gb|ACF45891.1| NADH dehydrogenase (quinone) [Prosthecochloris aestuarii DSM 271]
Length = 400
Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats.
Identities = 167/397 (42%), Positives = 223/397 (56%), Gaps = 32/397 (8%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
S +N GPQHP+ HGVLRL + DGE+V +P++G LHR EK E + VP+
Sbjct: 30 SEEMILNMGPQHPSTHGVLRLECKTDGEVVTEAEPYLGYLHRCFEKHAEVVDYPGIVPFV 89
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DR+DY+A MN E AY +AVEKLL +EIP R + +RV+ SE+ RI SHL+ + T A+D+GA
Sbjct: 90 DRMDYLAAMNSEFAYCIAVEKLLDVEIPRRVEFMRVIVSELNRIASHLVAIGTYAIDLGA 149
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
TP L+ F +RE +M E ASG+RM Y GG D PP E + + F
Sbjct: 150 FTPFLFCFRDREHIMSLLEWASGARMLYNYIWIGGASFDFPPGFKERTAEFVNYFRPKAL 209
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
++ LLT N IF +R IG + + A +G+SG M+RGSG WDLRK PY Y ELDF
Sbjct: 210 ELQRLLTENEIFVKRTKGIGMMPPDVAVNYGWSGPMLRGSGVEWDLRKHDPYSIYPELDF 269
Query: 246 DIPIG-----KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+ + GD R+LVR EM ES+ +I QC++++ N P SA +I
Sbjct: 270 KVCVPDGKHSDIGDSLSRHLVRAYEMVESLSMIEQCLDKMPDANGFDPRSAIAKRI---- 325
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG-GNKPYRCKIRA 359
GEVY E P+GE G Y++SDG KP RCK R+
Sbjct: 326 ----------------------RPKAGEVYGRAENPRGELGFYIVSDGKSTKPVRCKARS 363
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +L AM+ L G + D+ AI+GS+DIV GEVDR
Sbjct: 364 SCFVNLSAMKELSMGQLIPDLVAIIGSIDIVLGEVDR 400
>gi|311033316|ref|ZP_07711406.1| NADH dehydrogenase subunit D [Bacillus sp. m3-13]
Length = 366
Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats.
Identities = 157/391 (40%), Positives = 221/391 (56%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RL++++DGEI++ P IG LHRGTEKL E + Q +PY
Sbjct: 3 RTEEMLLNVGPQHPSTHGVFRLVIKIDGEIIKEATPVIGYLHRGTEKLAENLQYTQIIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY++ M + AVE ++GIEIP R + +RVL E+GR+ SHL+ T +D+G
Sbjct: 63 TDRMDYLSAMTNNYVLCHAVETMMGIEIPDRAEYLRVLAMELGRVASHLVWYGTYLLDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++P L+ F ERE ++ SG+R+ Y R GGV D P +E + + L
Sbjct: 123 AVSPFLYAFREREMIINLLNELSGARLTFNYMRVGGVKWDAPEGWIEKVEEFVPYMREQL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
DL+TGN IF R +G EDA+ + SG +R +G WDLRK +PY Y
Sbjct: 183 KGYHDLVTGNEIFMSRVKGVGRYTKEDAFAYSLSGANLRCTGVKWDLRKDEPYSIYDRFT 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FD+P + GD + RY RM E+ ES+KII Q V + K G + A PKI+
Sbjct: 243 FDVPTREGGDAWARYHCRMEEIEESLKIIEQAVEQFP---KEGAIMAKVPKII------- 292
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE Y +E+P+GE G Y+ SDG +PYR K R P + +
Sbjct: 293 ------------------KAPKGEAYVRIESPRGEIGCYIASDGKKEPYRLKFRRPSFYN 334
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L +G +A++ AILG++DIV GEVD
Sbjct: 335 LQILPKLLEGENMANLIAILGAIDIVLGEVD 365
>gi|269955280|ref|YP_003325069.1| NADH dehydrogenase I subunit D [Xylanimonas cellulosilytica DSM
15894]
gi|269303961|gb|ACZ29511.1| NADH dehydrogenase I, D subunit [Xylanimonas cellulosilytica DSM
15894]
Length = 447
Score = 366 bits (941), Expect = 2e-99, Method: Composition-based stats.
Identities = 168/408 (41%), Positives = 241/408 (59%), Gaps = 19/408 (4%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GPQHP+ HGVLRL+LE+DGE V +G LH G EK +E +T+ Q +
Sbjct: 41 ERIVVNMGPQHPSTHGVLRLMLEIDGETVTEARAGVGYLHTGIEKNMEFRTWTQGTTFCT 100
Query: 67 RLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
R+DY+AP QE A+ LA E LLG+ ++P R +IRVL E+ RI SHL+ + T ++G
Sbjct: 101 RMDYLAPFFQEEAFCLATETLLGVTDDVPERASVIRVLMMELNRIASHLVCLGTAGNEMG 160
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A T F RE+++ +E +G RM+ AY RPGGV QD+P + + + L
Sbjct: 161 ATTVMTVAFTGREEILRIFEAVTGLRMNHAYIRPGGVAQDVPEGIEDQVRKAVPQIKHYL 220
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ DL+ N IFK R V G++ L G +G ++R +G +D+RK+ PY Y D
Sbjct: 221 GQLGDLMLANPIFKARLVGTGSLNLAGCMALGITGPVLRSAGLPYDVRKAFPYSGYETYD 280
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK---- 300
FD+P+ ++ DCYDR ++R+ E +S+KI+ Q + RL +NK P +D KI P
Sbjct: 281 FDVPVSENADCYDRVVLRLEECYQSLKIVEQALVRL-EQNKGAPTMIADKKIAWPALLAV 339
Query: 301 ------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG 348
+ M SME+LIHHFK+ TEG+ VP G+ + VE P+GE GV+++SDG
Sbjct: 340 GADGQGNSLEHIKKIMGTSMEALIHHFKIVTEGFRVPAGQAWQTVEHPRGELGVHVVSDG 399
Query: 349 GNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G +PYR R P + +LQA+ +C+G Q+ADV + SLD V G VDR
Sbjct: 400 GTRPYRAHFRDPSFNNLQAVSVMCEGGQVADVVVSVASLDPVLGGVDR 447
>gi|326572774|gb|EGE22760.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Moraxella
catarrhalis BC7]
Length = 582
Score = 366 bits (941), Expect = 2e-99, Method: Composition-based stats.
Identities = 149/393 (37%), Positives = 216/393 (54%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+AHG RL+L+LDGE + P IG HRG EK+ E +T+ +P
Sbjct: 194 RDEDFMFLNIGPNHPSAHGAFRLVLQLDGEEIVDCIPDIGYHHRGAEKMAERQTWHSFIP 253
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ + E Y +AVEKL GI P R +IR++ SE RI ++LL T D
Sbjct: 254 YTDRIDYLGGVMNELPYIMAVEKLAGISTPERANVIRIMMSEFFRITNNLLYWGTFIQDA 313
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP + F +R+K E +G RMH A+FR GG D+P + + D P
Sbjct: 314 GGMTPVFYMFADRQKAYDVIEAVTGYRMHPAWFRIGGTAHDLPNGWQRLVREFLDWMPKR 373
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ N + K R N+ + A WG +G +R +G +DLRK++PY Y
Sbjct: 374 IDEYVKATMTNSVLKGRTQNVAQYDAKHALAWGVTGAGLRATGIEFDLRKARPYLGYENF 433
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FD+P+ +GD YDR LV++ E+R+S++II QC+N + G A P VPP +
Sbjct: 434 EFDVPVFYNGDAYDRCLVKIEEIRQSLRIIEQCLNNM----PSGAYKADHPLAVPPPKDK 489
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ +E+LI+HF + G +P GE VE KG Y+ISD YR +IR P +A
Sbjct: 490 TLKDIETLINHFVSVSWGPVMPAGESACMVEGVKGLNSYYVISDKSTMSYRTRIRTPTFA 549
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ M + G ++D L S+DIV + DR
Sbjct: 550 HLQQMPSVINGSLVSDAIIYLASIDIVMADCDR 582
>gi|156598265|gb|ABU85395.1| NADH-plastoquinone oxidoreductase subunit 7 [Ginkgo biloba]
Length = 393
Score = 366 bits (941), Expect = 2e-99, Method: Composition-based stats.
Identities = 160/396 (40%), Positives = 218/396 (55%), Gaps = 5/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + ++ GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q
Sbjct: 3 MLATEKDPMMVSMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIVQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY R DY+A M E A E+L I+IP R IRV+ E+ RI HLL +
Sbjct: 63 YLPYVTRWDYLATMFTEAVTVNAPERLGNIQIPRRASYIRVIMLELSRIAPHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP + ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 123 ADIGAQTPFFYISREREIIYDLFEAATGMRMMHNYFRIGGVAVDLPYGWIDKCLDFCDYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ + L+T N IF +R +G + E+A W SG M+R SG WDLRK YECY
Sbjct: 183 LPKVAEYERLITHNPIFLERVEGVGIISREEAISWSLSGPMLRASGIQWDLRKVDHYECY 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E D+++ + GD RYLVR+ EM ES+KIIRQ + + G GP + + +
Sbjct: 243 DEFDWEVQWQEEGDSLARYLVRIGEMTESIKIIRQALKVIPG----GPYENLEARRLDKG 298
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ E K + + E Y VEAPKGE G++L+ D P+R KIR
Sbjct: 299 KDSEWNDFE-FRFISKKPSPTFESSKQEHYVRVEAPKGELGIFLVGDDSIFPWRWKIRPS 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +LQ L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 358 GFINLQIPPQLVKNMKLADIMTILGSIDIIMGEVDR 393
>gi|108758426|ref|YP_630946.1| NADH dehydrogenase I subunit D [Myxococcus xanthus DK 1622]
gi|123247855|sp|Q1D8S7|NUOD_MYXXD RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|108462306|gb|ABF87491.1| NADH dehydrogenase I, D subunit [Myxococcus xanthus DK 1622]
Length = 415
Score = 366 bits (941), Expect = 2e-99, Method: Composition-based stats.
Identities = 159/391 (40%), Positives = 240/391 (61%), Gaps = 4/391 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+++ IN GP HPA HG +RL +EL+GE + ++DP IG LHRG +K E T+ Q +PY
Sbjct: 28 QTKRMVINMGPSHPATHGTVRLKVELEGETIVKIDPEIGFLHRGFQKSCENVTWTQCLPY 87
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRL+Y++ M + AVEKL+G+EIP R Q IRV+ SE+ R+ HL V +++G
Sbjct: 88 TDRLNYLSAMMNNFGFLNAVEKLIGLEIPERAQYIRVIGSELHRLTDHLTCVGATGLEMG 147
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
P L E RE L +G+R+ ++ R GG ++D+P + + D + L
Sbjct: 148 GFAPFLLAMEFRELLHDRTAELTGARLTTSFGRVGGSNRDLPEGWIPRVHKTLDQGLALL 207
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+++ LLT NRIF R G + EDA +G++G +R G +D+RK++PY Y D
Sbjct: 208 DEMEGLLTNNRIFVDRTKGTGVISAEDAIEYGYTGPALRACGVDYDIRKTKPYWVYDRFD 267
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDIP+G+HGD YDRYLVR+ EMR+S++I+RQ ++ + GP+ D +I P + ++
Sbjct: 268 FDIPVGEHGDNYDRYLVRLEEMRQSIRILRQAMDTIPA----GPIIVDDWRIALPPKPEV 323
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
++E ++ HFKL EG VP GEVY A EA GE G YL+SDG +PY+ +RAPG+
Sbjct: 324 YGTIEGVMSHFKLVMEGIQVPAGEVYDATEASNGELGWYLVSDGRGRPYKVHVRAPGFPV 383
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
L A+ + +G LAD+ +++++ GEV+
Sbjct: 384 LAAVPHIIEGKMLADLIPTFDTINMIGGEVE 414
>gi|168700385|ref|ZP_02732662.1| NADH dehydrogenase subunit D [Gemmata obscuriglobus UQM 2246]
Length = 409
Score = 366 bits (941), Expect = 3e-99, Method: Composition-based stats.
Identities = 175/393 (44%), Positives = 227/393 (57%), Gaps = 9/393 (2%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
+T+NFGPQHPA H LRLIL LDGE + + P IG LH G EKL E F Q V DR+
Sbjct: 21 YTLNFGPQHPATHTTLRLILTLDGETIVKAVPDIGYLHSGFEKLGEDLDFNQYVTIVDRM 80
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+Y++P E A+ VEKL+GIE+ R + +R + +E+ RI HLL V A+D+GALT
Sbjct: 81 NYISPFANECAWFTTVEKLIGIELTPRCKYLRTILAELARISDHLLCVGAAALDLGALTG 140
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
L+ F REK+ E ASG R H +Y R GG+ D+ ++V I + +F DI
Sbjct: 141 FLYAFNAREKVYNIMEAASGQRFHPSYCRVGGLMADVNDDVVALIRDFVKTFRKVHADIC 200
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE--LDFD 246
LL NRIF R IG + EDA SG + R SG DLRK +PY Y E F
Sbjct: 201 RLLNRNRIFIDRTKGIGVLSKEDAINTSCSGPVARASGVVRDLRKDEPYLAYKELSGAFK 260
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSAS-DPKIVPPKRADMK 305
I GK GDCY+RYLVRM EM ES KII V L GPV+ + K+ P +
Sbjct: 261 IVCGKGGDCYNRYLVRMGEMLESWKIINAAVENL----PSGPVNVDLNDKLTIPDKNATY 316
Query: 306 RSMESLIHHFKLYTE--GYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
RS+E LI HF+L+ + PV EVY A E GE G YL++DG K +R + R P +
Sbjct: 317 RSIEGLIQHFELFMWNRRWETPVEEVYGANETANGELGFYLVADGTGKAFRARTRPPSFI 376
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H + +GHQ++DV A+LGSL+I+ E+DR
Sbjct: 377 HFAVFPMMMEGHQISDVPAVLGSLNIIAAELDR 409
>gi|316935783|ref|YP_004110765.1| NADH dehydrogenase I subunit D [Rhodopseudomonas palustris DX-1]
gi|315603497|gb|ADU46032.1| NADH dehydrogenase I, D subunit [Rhodopseudomonas palustris DX-1]
Length = 581
Score = 366 bits (941), Expect = 3e-99, Method: Composition-based stats.
Identities = 161/390 (41%), Positives = 229/390 (58%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N+GP A HGV R++L LDGE + P IG HRG EK+ E +T+ +PY D
Sbjct: 196 ELMILNYGPHSMATHGVFRIVLALDGEEIVAARPDIGFHHRGAEKMAERQTWHNFLPYTD 255
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+DY+ + E Y AVEK GI++P R +R++ SE+ RI++HLL T A D GA+
Sbjct: 256 RVDYLGGVMGEMPYLQAVEKACGIKVPDRALTVRIMLSEMFRIMNHLLFYGTMAQDTGAM 315
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
+P + F +RE+ E +G+RMH +FR GG+ D+P + + + D PS L+D
Sbjct: 316 SPVFYMFTDRERGYRVIESITGARMHPGFFRIGGLSMDLPEGWEKLVREFLDWMPSRLDD 375
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
++ N IF+ R IGT A WG +G +R +G AWD+RK++PY + DF+
Sbjct: 376 YEGMVLRNEIFRARTKGIGTYDTAMALDWGVTGPGLRATGYAWDVRKARPYAGFENFDFE 435
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
IP+G GDCYDR +VR+ E+R+S+KIIRQCV+ + GP+ A P PP R M
Sbjct: 436 IPVGHTGDCYDRTVVRVEEIRQSLKIIRQCVDNM----PSGPIKADHPLTTPPPRERMLH 491
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+E++IHHF + G +P GE VE +G LISDG YR +IR P +AHLQ
Sbjct: 492 DIETMIHHFVSTSWGPVLPPGEYTGQVETVRGLTQFALISDGEPSSYRTRIRTPSFAHLQ 551
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + G +AD+ A LGS+D V +VDR
Sbjct: 552 MISAVAPGMMVADLVAYLGSIDYVMSDVDR 581
>gi|223936526|ref|ZP_03628437.1| NADH dehydrogenase (quinone) [bacterium Ellin514]
gi|223894690|gb|EEF61140.1| NADH dehydrogenase (quinone) [bacterium Ellin514]
Length = 407
Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats.
Identities = 155/396 (39%), Positives = 215/396 (54%), Gaps = 28/396 (7%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ + GPQHP+ HGV R+ + L+GE V ++ P G LHR E++ E+ T+L +
Sbjct: 39 NPADGELLEVAMGPQHPSTHGVFRMDVVLNGEQVVKLKPVFGYLHRNHEQIAESTTYLGS 98
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+PY DRLDY M AYAL+VEKL G++ P R + +R++ +E+ R+++H V
Sbjct: 99 MPYTDRLDYFCSMTNNWAYALSVEKLAGLQPPERAEYVRIITAELTRLVNHTCLVGFLLQ 158
Query: 122 DVGA-LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP ++ F ERE ++ +E SGSRM Y R GG D E + +F
Sbjct: 159 DMGALGTPLMYAFRERETILDLFESLSGSRMMCNYMRFGGCRVDPSAEWLAQAKQAVKNF 218
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P L++ LLT N I R +G + E A +G M+R SG +D+RK Y Y
Sbjct: 219 PRFLDEFEKLLTENEILVSRTQGVGVLPAELAINASITGPMLRASGVNYDIRKVDKYGIY 278
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+F +PIG HGD YDRY+VR++EMRESVKI+ Q + + GP+ KI
Sbjct: 279 DRFNFRVPIGDHGDVYDRYMVRVLEMRESVKILDQALRDIPA----GPIMDPKAKIR--- 331
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
G+ GE Y +E PKGE G YLISDG PYR ++R P
Sbjct: 332 --------------------GFRPKAGEAYGRIEGPKGELGFYLISDGSPNPYRYRVRPP 371
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L +E +C G +ADV ILGS+DIV GEVDR
Sbjct: 372 SLINLTVLEDMCLGQSVADVVVILGSVDIVLGEVDR 407
>gi|313813677|gb|EFS51391.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL025PA1]
Length = 433
Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats.
Identities = 168/412 (40%), Positives = 235/412 (57%), Gaps = 19/412 (4%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++ + +NFGP HP+ HGV+RLI+ELDGE V + IG LH G EK +E +T+ Q V
Sbjct: 23 ERGDETVVVNFGPSHPSTHGVMRLIIELDGESVSDLRVGIGFLHTGIEKNMEFRTWTQGV 82
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R +YVA E Y LAVEKLLGI ++P R +++RV+ +E+ RI SHL+ V T
Sbjct: 83 TFMTRCNYVANFFNELVYCLAVEKLLGITDDVPERARVLRVMITELNRISSHLIAVGTGG 142
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+++GA + G ERE ++ F + +G RM+ A+ RPGGV D+P ++ +
Sbjct: 143 LELGASSVAEVGLREREIILEFNQAVTGLRMNNAWIRPGGVATDLPETGLDQLRDLIKRM 202
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L +I N IFK R IG L G +G +R +G WDLRK+QPY Y
Sbjct: 203 EKYLPEIGQFCNENPIFKARTQGIGYADLSTCMALGVTGPALRATGLPWDLRKTQPYCDY 262
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
DFD+ DCY R+ +R+ EM +SV+I++QC+ RL DP I P
Sbjct: 263 DTYDFDVATWDTCDCYGRFRIRLEEMDQSVRILKQCLKRLEDTQGDRH-MVEDPHIAWPA 321
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
R M SME+LIHHFK+ TEG+ VP G+VY A+E GE G +L
Sbjct: 322 ELALGPDGQGNSNEHIRHIMGESMEALIHHFKIVTEGFRVPAGQVYQAIEGAGGELGCHL 381
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +PYR +R PG+ ++Q++ +C+G L+DV L SLD V G VDR
Sbjct: 382 VSDGGVRPYRSHLRDPGFVNVQSLPAMCEGGMLSDVVPSLASLDPVMGGVDR 433
>gi|50843383|ref|YP_056610.1| NADH dehydrogenase subunit D [Propionibacterium acnes KPA171202]
gi|282855271|ref|ZP_06264603.1| NADH dehydrogenase subunit D [Propionibacterium acnes J139]
gi|81611156|sp|Q6A6G1|NUOD_PROAC RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|50840985|gb|AAT83652.1| NADH dehydrogenase I chain D [Propionibacterium acnes KPA171202]
gi|282581859|gb|EFB87244.1| NADH dehydrogenase subunit D [Propionibacterium acnes J139]
gi|313763287|gb|EFS34651.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL013PA1]
gi|313814973|gb|EFS52687.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL059PA1]
gi|313829367|gb|EFS67081.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL063PA2]
gi|314916741|gb|EFS80572.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL005PA4]
gi|314919133|gb|EFS82964.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL050PA1]
gi|314921213|gb|EFS85044.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL050PA3]
gi|314923991|gb|EFS87822.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL001PA1]
gi|314930359|gb|EFS94190.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL067PA1]
gi|314956142|gb|EFT00538.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL027PA1]
gi|314959675|gb|EFT03777.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL002PA1]
gi|314965055|gb|EFT09154.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL082PA2]
gi|314969780|gb|EFT13878.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL037PA1]
gi|314983075|gb|EFT27167.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL110PA3]
gi|315090608|gb|EFT62584.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL110PA4]
gi|315093905|gb|EFT65881.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL060PA1]
gi|315098101|gb|EFT70077.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL059PA2]
gi|315102681|gb|EFT74657.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL046PA1]
gi|315104124|gb|EFT76100.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL050PA2]
gi|315107939|gb|EFT79915.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL030PA1]
gi|315108823|gb|EFT80799.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL030PA2]
gi|327325783|gb|EGE67575.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL103PA1]
gi|327333125|gb|EGE74852.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL097PA1]
gi|327451634|gb|EGE98288.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL087PA3]
gi|327452287|gb|EGE98941.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL083PA2]
gi|328752120|gb|EGF65736.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL025PA2]
gi|328757012|gb|EGF70628.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL087PA1]
Length = 433
Score = 366 bits (940), Expect = 4e-99, Method: Composition-based stats.
Identities = 168/412 (40%), Positives = 235/412 (57%), Gaps = 19/412 (4%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++ + +NFGP HP+ HGV+RLI+ELDGE V + IG LH G EK +E +T+ Q V
Sbjct: 23 ERGDETVVVNFGPSHPSTHGVMRLIIELDGESVSDLRVGIGFLHTGIEKNMEFRTWTQGV 82
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R +YVA E Y LAVEKLLGI ++P R +++RV+ +E+ RI SHL+ V T
Sbjct: 83 TFMTRCNYVANFFNELVYCLAVEKLLGITDDVPERARVLRVMITELNRISSHLIAVGTGG 142
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+++GA + G ERE ++ F + +G RM+ A+ RPGGV D+P ++ +
Sbjct: 143 LELGASSVAEVGLREREIILEFNQAVTGLRMNNAWIRPGGVATDLPETGLDQLRDLIKRM 202
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L +I N IFK R IG L G +G +R +G WDLRK+QPY Y
Sbjct: 203 EKYLPEIGQFCNENPIFKARTQGIGYADLSTCMALGVTGPALRATGLPWDLRKTQPYCDY 262
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
DFD+ DCY R+ +R+ EM +SV+I++QC+ RL DP I P
Sbjct: 263 DTYDFDVATWDTCDCYGRFRIRLEEMDQSVRILKQCLKRLEDTQGDRH-MVEDPHIAWPA 321
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
R M SME+LIHHFK+ TEG+ VP G+VY A+E GE G +L
Sbjct: 322 ELALGPDGQGNSNEHIRHIMGESMEALIHHFKIVTEGFRVPAGQVYQAIEGAGGELGCHL 381
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +PYR +R PG+ ++Q++ +C+G L+DV L SLD V G VDR
Sbjct: 382 VSDGGVRPYRSHLRDPGFVNVQSLPAMCEGGMLSDVVPSLASLDPVMGGVDR 433
>gi|326561155|gb|EGE11520.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Moraxella
catarrhalis 7169]
Length = 582
Score = 366 bits (939), Expect = 4e-99, Method: Composition-based stats.
Identities = 149/393 (37%), Positives = 216/393 (54%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+AHG RL+L+LDGE + P IG HRG EK+ E +T+ +P
Sbjct: 194 RDEDFMFLNIGPNHPSAHGAFRLVLQLDGEEIVDCIPDIGYHHRGAEKMAERQTWHSFIP 253
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ + E Y +AVEKL GI P R +IR++ SE RI ++LL T D
Sbjct: 254 YTDRIDYLGGVMNELPYIMAVEKLAGIITPKRANIIRIMMSEFFRITNNLLYWGTFIQDA 313
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP + F +R+K E +G RMH A+FR GG D+P + + D P
Sbjct: 314 GGMTPVFYMFADRQKAYDVIEAVTGYRMHPAWFRIGGTAHDLPNGWQRLVREFLDWMPKR 373
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ N + K R N+ + A WG +G +R +G +DLRK++PY Y
Sbjct: 374 IDEYVKATMTNSVLKGRTQNVAQYDAKHALAWGVTGAGLRATGIEFDLRKARPYLGYENF 433
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FD+P+ +GD YDR LV++ E+R+S++II QC+N + G A P VPP +
Sbjct: 434 EFDVPVFYNGDAYDRCLVKIEEIRQSLRIIEQCLNNM----PSGAYKADHPLAVPPPKER 489
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ +E+LI+HF + G +P GE VE KG Y+ISD YR +IR P +A
Sbjct: 490 TLQDIETLINHFVSVSWGPVMPAGESACMVEGVKGLNSYYVISDKSTMSYRTRIRTPTFA 549
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ M + G ++D L S+DIV + DR
Sbjct: 550 HLQQMPSVINGSLVSDAIIYLASIDIVMADCDR 582
>gi|289427011|ref|ZP_06428730.1| NADH dehydrogenase subunit D [Propionibacterium acnes J165]
gi|289159833|gb|EFD08018.1| NADH dehydrogenase subunit D [Propionibacterium acnes J165]
gi|313806330|gb|EFS44846.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL087PA2]
gi|313819441|gb|EFS57155.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL046PA2]
gi|313821247|gb|EFS58961.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL036PA1]
gi|313822298|gb|EFS60012.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL036PA2]
gi|313826144|gb|EFS63858.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL063PA1]
gi|314925993|gb|EFS89824.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL036PA3]
gi|314962249|gb|EFT06350.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL002PA2]
gi|314988569|gb|EFT32660.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL005PA3]
gi|315083923|gb|EFT55899.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL027PA2]
gi|315085060|gb|EFT57036.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL002PA3]
gi|327325712|gb|EGE67509.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL096PA3]
gi|327447755|gb|EGE94409.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL013PA2]
gi|332676326|gb|AEE73142.1| NADH-quinone oxidoreductase subunit D [Propionibacterium acnes 266]
Length = 433
Score = 366 bits (939), Expect = 4e-99, Method: Composition-based stats.
Identities = 168/412 (40%), Positives = 235/412 (57%), Gaps = 19/412 (4%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++ + +NFGP HP+ HGV+RLI+ELDGE V + IG LH G EK +E +T+ Q V
Sbjct: 23 ERGDETVVVNFGPSHPSTHGVMRLIIELDGESVSDLRVGIGFLHTGIEKNMEFRTWTQGV 82
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R +YVA E Y LAVEKLLGI ++P R +++RV+ +E+ RI SHL+ V T
Sbjct: 83 TFMTRCNYVANFFNELVYCLAVEKLLGITDDVPERARVLRVMITELNRISSHLIAVGTGG 142
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+++GA + G ERE ++ F + +G RM+ A+ RPGGV D+P ++ +
Sbjct: 143 LELGASSVAEVGLREREIILEFNQAVTGLRMNNAWIRPGGVATDLPETGLDQLRDLIKRM 202
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L +I N IFK R IG L G +G +R +G WDLRK+QPY Y
Sbjct: 203 EKYLPEIGQFCNENPIFKARTQGIGYADLSTCMALGVTGPALRATGLPWDLRKTQPYCDY 262
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
DFD+ DCY R+ +R+ EM +SV+I++QC+ RL DP I P
Sbjct: 263 DTYDFDVATWDTCDCYGRFRIRLEEMDQSVRILKQCLKRLEDTQGDRH-MVEDPHIAWPA 321
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
R M SME+LIHHFK+ TEG+ VP G+VY A+E GE G +L
Sbjct: 322 ELALGPDGQGNSNEHIRHIMGESMEALIHHFKIVTEGFRVPAGQVYQAIEGAGGELGCHL 381
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +PYR +R PG+ ++Q++ +C+G L+DV L SLD V G VDR
Sbjct: 382 VSDGGVRPYRSHLRDPGFVNVQSLPAMCEGGMLSDVVPSLASLDPVMGGVDR 433
>gi|298566659|gb|ADI86450.1| NADH-plastoquinone oxidoreductase subunit 7 [Uniola paniculata]
Length = 386
Score = 366 bits (939), Expect = 4e-99, Method: Composition-based stats.
Identities = 157/386 (40%), Positives = 214/386 (55%), Gaps = 5/386 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVVDXEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I+IP R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E A+G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWMDKCLDFCDYFLRG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK PYE Y++
Sbjct: 186 VVEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKIDPYESYNQF 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ + K GD RYLVR+ EM+ES+KII+ V ++ G GP + + +
Sbjct: 246 DWKVQWQKEGDSLARYLVRIGEMKESIKIIQXAVEKIPG----GPYENLEARRFKKAKNS 301
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + + + E+Y VEAPKGE G+YL+ D P+R KIR PG+
Sbjct: 302 EWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFI 360
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDI 389
+LQ + L K + A ILGS+DI
Sbjct: 361 NLQILPQLVKKMKXAXXMXILGSIDI 386
>gi|319650859|ref|ZP_08004996.1| NADH dehydrogenase subunit D [Bacillus sp. 2_A_57_CT2]
gi|317397457|gb|EFV78158.1| NADH dehydrogenase subunit D [Bacillus sp. 2_A_57_CT2]
Length = 366
Score = 366 bits (939), Expect = 4e-99, Method: Composition-based stats.
Identities = 152/391 (38%), Positives = 216/391 (55%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RL+L++DGEI++ P IG LHRGTEKL E + Q +PY
Sbjct: 3 RTEEMLLNVGPQHPSTHGVFRLVLKIDGEIIKEAKPVIGYLHRGTEKLAENLQYTQIIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY+A M + AVE ++ ++IP R + +R++ E+GRI SHL+ T +D+G
Sbjct: 63 TDRMDYLAAMTNNYILVHAVETMMDLKIPDRAEYLRIITMELGRIASHLVWWGTYLLDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A +P L+ F ERE ++ SG R+ Y R GGV D P +E + + L
Sbjct: 123 ATSPFLYAFREREMIINMLNEISGGRLTFNYMRVGGVKWDAPEGWIEKVREFVPYMREQL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
L+TGN IF R +G EDA + SG +R +G WDLRK +PY Y D
Sbjct: 183 KGYHQLVTGNEIFMNRVKGVGKYTKEDALNYSLSGANLRCTGVKWDLRKDEPYSIYDRFD 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FD+ + GD + RY VRM E+ ES+KI+ Q V + G + A PKI+
Sbjct: 243 FDVAVQDGGDAWARYHVRMKEIEESLKILEQAVEQFPS---EGEILAIVPKII------- 292
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE + +E+P+GE G Y+ SDG +PYR K R P + +
Sbjct: 293 ------------------KAPKGEAFVRIESPRGEIGCYIASDGKKEPYRLKFRRPSFYN 334
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L +G +A++ AILG++DIV GEVD
Sbjct: 335 LQILPKLLEGENIANLIAILGAIDIVLGEVD 365
>gi|304413373|ref|ZP_07394846.1| NADH:ubiquinone oxidoreductase, chain C,D [Candidatus Regiella
insecticola LSR1]
gi|304284216|gb|EFL92609.1| NADH:ubiquinone oxidoreductase, chain C,D [Candidatus Regiella
insecticola LSR1]
Length = 599
Score = 366 bits (939), Expect = 4e-99, Method: Composition-based stats.
Identities = 149/395 (37%), Positives = 226/395 (57%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++ +N GP HP++HG R+IL+LDGE + P IG HRG EK+ E +++ +
Sbjct: 209 RENEDFMFLNLGPNHPSSHGAFRIILQLDGEEIIDCVPDIGYHHRGAEKMGERQSWHSYI 268
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R ++IRV+ SE+ RI SHLL ++T D
Sbjct: 269 PYTDRIEYLGGCVNEMPYVLAVEKLAGIVVPDRVKVIRVMLSELFRINSHLLYISTFIQD 328
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA++P F +R+K+ E +G RMH A+FR GGV D+P + + P
Sbjct: 329 VGAMSPVFLAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWQHLLHDFLHWMPK 388
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ + N I K R++ + + A WG +G +R +G A+D+RK +PY Y
Sbjct: 389 RLDSYVKIALKNSILKGRSIGVASYDASAALEWGVTGAALRATGIAFDVRKWRPYSGYEN 448
Query: 243 LDFDIPIGK-HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DFD+PIG + DCY R ++++ E+R+S++I++QC + G A P PP +
Sbjct: 449 FDFDVPIGDGNSDCYTRVMLKVEEIRQSLRILQQCYKNM----PEGSFKADHPLTTPPPK 504
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + +EA KG YL SDGG YR ++R P
Sbjct: 505 ERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGGTMSYRTRVRTPS 564
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AHLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 565 FAHLQQIPSVIRGSLVSDLIVYLGSIDFVMSDVDR 599
>gi|188533349|ref|YP_001907146.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Erwinia
tasmaniensis Et1/99]
gi|218528046|sp|B2VIV5|NUOCD_ERWT9 RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|188028391|emb|CAO96252.1| NADH dehydrogenase I C/D [Erwinia tasmaniensis Et1/99]
Length = 599
Score = 366 bits (939), Expect = 4e-99, Method: Composition-based stats.
Identities = 150/395 (37%), Positives = 220/395 (55%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +
Sbjct: 209 TANEDFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 268
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI++P R ++IRV+ SE+ RI SHLL ++T D
Sbjct: 269 PYTDRIEYLGGCVNEMPYVLAVEKLAGIKVPERVEVIRVMLSELFRINSHLLYISTFIQD 328
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA++P + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 329 VGAMSPVFFAFTDRQKIYDVVEAITGFRMHPAWFRIGGVAHDLPKGWERLLREFLDWMPK 388
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L N + R + +E+A WG +G +R +G +D+RK +PY Y
Sbjct: 389 RLKAYEQTALKNSVLIGRAKGVSAYNMEEALAWGTTGAGLRATGLDFDVRKWRPYSGYEN 448
Query: 243 LDFDIPIGKHGDC-YDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF+IPIG C Y R +++M EMR+S++I+ QC+N + GP A P PP +
Sbjct: 449 FDFEIPIGDGVSCAYSRVMLKMEEMRQSMRILEQCLNNMPA----GPFKADHPLTTPPPK 504
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + +EA KG YL SDG YR ++R P
Sbjct: 505 ERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPS 564
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ HLQ + + G ++D+ LGS+D V +VDR
Sbjct: 565 FPHLQQIPSVINGSLVSDLIVYLGSIDFVMSDVDR 599
>gi|314979334|gb|EFT23428.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL072PA2]
gi|315089489|gb|EFT61465.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL072PA1]
Length = 433
Score = 366 bits (939), Expect = 5e-99, Method: Composition-based stats.
Identities = 168/412 (40%), Positives = 234/412 (56%), Gaps = 19/412 (4%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++ + +NFGP HP+ HGV+RLI+ELDGE V + IG LH G EK +E +T+ Q V
Sbjct: 23 ERGDETVVVNFGPSHPSTHGVMRLIIELDGESVSDLRVGIGFLHTGIEKNMEFRTWTQGV 82
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R +YVA E Y LAVEKLLGI ++P R + +RV+ +E+ RI SHL+ V T
Sbjct: 83 TFMTRCNYVANFFNELVYCLAVEKLLGITDDVPERARGLRVMITELNRISSHLIAVGTGG 142
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+++GA + G ERE ++ F + +G RM+ A+ RPGGV D+P ++ +
Sbjct: 143 LELGASSVAEVGLREREIILEFNQAVTGLRMNNAWIRPGGVATDLPETGLDQLRDLIKRM 202
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L +I N IFK R IG L G +G +R +G WDLRK+QPY Y
Sbjct: 203 EKYLPEIGQFCNENPIFKARTQGIGYADLSTCMALGVTGPALRATGLPWDLRKTQPYCDY 262
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
DFD+ DCY R+ +R+ EM +SV+I++QC+ RL DP I P
Sbjct: 263 DTYDFDVATWDTCDCYGRFRIRLEEMDQSVRILKQCLKRLEDTQGDRH-MVEDPHIAWPA 321
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
R M SME+LIHHFK+ TEG+ VP G+VY A+E GE G +L
Sbjct: 322 ELALGPDGQGNSNEHIRHIMGESMEALIHHFKIVTEGFRVPAGQVYQAIEGAGGELGCHL 381
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +PYR +R PG+ ++Q++ +C+G L+DV L SLD V G VDR
Sbjct: 382 VSDGGVRPYRSHLRDPGFVNVQSLPAMCEGGMLSDVVPSLASLDPVMGGVDR 433
>gi|78188615|ref|YP_378953.1| NADH dehydrogenase I, 49 kDa subunit [Chlorobium chlorochromatii
CaD3]
gi|123580174|sp|Q3ASW5|NUOD_CHLCH RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|78170814|gb|ABB27910.1| NADH dehydrogenase subunit D [Chlorobium chlorochromatii CaD3]
Length = 400
Score = 365 bits (938), Expect = 5e-99, Method: Composition-based stats.
Identities = 167/397 (42%), Positives = 228/397 (57%), Gaps = 32/397 (8%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ + GPQHP+ HGVL+L DGE+V +P +G LHR EK E + VP+
Sbjct: 30 TEQMVLAMGPQHPSTHGVLKLECLTDGEVVTEAEPVLGYLHRCFEKTAENVDYPAVVPFT 89
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DRLDY+A MN E AYAL VEKLL IEIP R + IR+L +E+ RI SHL+ + T +D+GA
Sbjct: 90 DRLDYLAAMNSEFAYALTVEKLLDIEIPRRVEFIRILVAELNRIASHLVAIGTYGIDLGA 149
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
TP L+ F +RE ++ E ASG+RM Y GG+ D+P + ++ I +C F
Sbjct: 150 FTPFLFCFRDREIILGLLEWASGARMLYNYVWVGGLAYDVPADFLKRIREFCAYFRPKAK 209
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+++DLLT N IF +R IG + + A +G+SG M+RGSG WDLR++ PY YSELDF
Sbjct: 210 ELADLLTSNEIFVKRTHGIGIMPADVAINYGWSGPMLRGSGVEWDLRRNDPYSLYSELDF 269
Query: 246 DIPIGK-----HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
++ + GDC R+LVR EM ES+ II QC++++ + +A KI
Sbjct: 270 NVCVPDGKHSVIGDCLSRHLVRAYEMEESLNIIEQCIDKMPSSDGFNSRAAIPKKI---- 325
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG-GNKPYRCKIRA 359
GEVY E P+GE G Y+ SDG KP RCK R+
Sbjct: 326 ----------------------RPKAGEVYGRAENPRGELGFYIQSDGKSTKPLRCKARS 363
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +L AM+ L KG + D+ AI+GS+DIV GEVDR
Sbjct: 364 SCFVNLSAMKDLSKGQLIPDLVAIIGSIDIVLGEVDR 400
>gi|297625731|ref|YP_003687494.1| NADH-quinone oxidoreductase chain D [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
gi|296921496|emb|CBL56050.1| NADH-quinone oxidoreductase chain D (EC 1.6.99.5) (NADH
dehydrogenase I, chain D) [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
Length = 457
Score = 365 bits (938), Expect = 6e-99, Method: Composition-based stats.
Identities = 159/412 (38%), Positives = 233/412 (56%), Gaps = 19/412 (4%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++ + IN GPQHP+ HGV+RL++E+DGE + + P IG LH G EK E +++ Q
Sbjct: 47 ERSDETIVINVGPQHPSTHGVMRLVMEMDGETIISLRPSIGFLHTGIEKSAEYRSWSQGS 106
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+F R +YVA + E AY+LAV+KLLGI +P RG +RV+ E RI SH+ V
Sbjct: 107 VFFTRCNYVAGIFNEAAYSLAVDKLLGITDKMPRRGNQLRVMAMEANRIASHITAVGATG 166
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+D+GA + ERE+ + F E +G RM+ AY RPGGV D+P + ++ +
Sbjct: 167 LDLGATSVQEVALRERERTLDFLEAVTGLRMNNAYIRPGGVENDLPEDGLDLLDELIRQL 226
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ +I N IF +RN + + L A G SG ++R +G WDLRK +PY Y
Sbjct: 227 RKNVPEIGQYTLTNPIFVRRNKGVAHMSLASAVMMGASGPVLRSAGYPWDLRKMEPYCGY 286
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
DF++ D Y R+++R+ E+ +S++I+ Q + L P D + P
Sbjct: 287 ENYDFEVCTADSFDSYGRFVIRLNEIEQSLRILEQVRDELAESKGE-PYRIEDADLSWPS 345
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
+ M SME LIHHFK+ ++G+HVP GEVY AVEAP GE G++L
Sbjct: 346 DLTVASDGQGNSNEHVKHIMGESMEGLIHHFKIVSQGFHVPAGEVYMAVEAPAGELGMHL 405
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +PYR +R PG+ H+Q++ LC+G L+D + S+D V G VDR
Sbjct: 406 VSDGGTRPYRAHLRDPGFNHVQSLPLLCEGGMLSDAVMAISSIDPVMGGVDR 457
>gi|259907929|ref|YP_002648285.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Erwinia
pyrifoliae Ep1/96]
gi|224963551|emb|CAX55041.1| NADH-quinone oxidoreductase subunit C/D [Erwinia pyrifoliae Ep1/96]
gi|283477810|emb|CAY73726.1| NADH dehydrogenase I chain C/D [Erwinia pyrifoliae DSM 12163]
Length = 599
Score = 365 bits (938), Expect = 6e-99, Method: Composition-based stats.
Identities = 149/395 (37%), Positives = 219/395 (55%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +
Sbjct: 209 TANEDFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 268
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI++P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 269 PYTDRIEYLGGCVNEMPYVLAVEKLAGIKVPERVDVIRVMLSELFRINSHLLYISTFIQD 328
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA++P + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 329 VGAMSPVFFAFTDRQKIYDVVEAITGFRMHPAWFRIGGVAHDLPKGWERLLREFLDWMPK 388
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L N + R + +E+A WG +G +R +G +D+RK +PY Y
Sbjct: 389 RLKAYEQTALKNSVLIGRAKGVSAYNMEEALAWGTTGAGLRATGLDFDVRKWRPYSGYEN 448
Query: 243 LDFDIPIGKHGDC-YDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF++PIG C Y R +++M EMR+S++I+ QC+N + GP A P PP +
Sbjct: 449 FDFEVPIGDGVSCAYSRVMLKMEEMRQSMRILEQCLNNMPA----GPFKADHPLTTPPPK 504
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + +EA KG YL SDG YR ++R P
Sbjct: 505 ERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPS 564
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ HLQ + + G ++D+ LGS+D V +VDR
Sbjct: 565 FPHLQQIPSVINGSLVSDLIVYLGSIDFVMSDVDR 599
>gi|153004160|ref|YP_001378485.1| NADH dehydrogenase (quinone) [Anaeromyxobacter sp. Fw109-5]
gi|229891263|sp|A7H9V5|NUOD2_ANADF RecName: Full=NADH-quinone oxidoreductase subunit D 2; AltName:
Full=NADH dehydrogenase I subunit D 2; AltName:
Full=NDH-1 subunit D 2
gi|152027733|gb|ABS25501.1| NADH dehydrogenase (quinone) [Anaeromyxobacter sp. Fw109-5]
Length = 431
Score = 365 bits (938), Expect = 6e-99, Method: Composition-based stats.
Identities = 160/390 (41%), Positives = 233/390 (59%), Gaps = 4/390 (1%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
S+ T+N GP HPA HGV R ++ELDGE++ + IG LHRG EK E T+ Q PY
Sbjct: 45 SKLMTVNLGPSHPAMHGVTRAVVELDGEMIRSMKLDIGFLHRGFEKSCENVTWTQCFPYT 104
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DRL+YV+ + +ALAVEKL +++P R + +RV+ SEI RI HL V AM++GA
Sbjct: 105 DRLNYVSSIMNNVGFALAVEKLCKLDVPERAKYLRVVTSEIHRICDHLTLVGAMAMELGA 164
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+T L+ E R+ + G+R+ + Y R GGV +D P +E D ++
Sbjct: 165 MTVFLYAIEARDIIYDRLAELCGARLTSNYGRIGGVARDTPDGWIEKTEKTLDRVKGYVD 224
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+I L++ NRIF R G V DA GF+G +R SG +DLRK+ PY Y +DF
Sbjct: 225 EIDQLVSRNRIFIDRTRGTGVVPRADAIELGFTGPCLRASGEPYDLRKAAPYLVYDRIDF 284
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
DIP+G +GD +DR+ +RM EMR+S +IIRQC ++ + G ++ D + V P + +
Sbjct: 285 DIPVGTNGDNFDRFQMRMEEMRQSDRIIRQCFAQM----EPGEIAVQDFRYVLPPKPLVY 340
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
++E L+ HFK+ EG VP GE Y EA GE G Y++SDGG +PY+ +RAPG+ L
Sbjct: 341 GTIEGLMAHFKIIMEGIQVPAGEAYGYTEAANGELGFYVVSDGGGRPYKLGLRAPGWPML 400
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
A+ F+ G L+D+ S++++ GEV+
Sbjct: 401 AALPFMSVGSLLSDLIPTFDSINMIGGEVE 430
>gi|153799810|gb|ABS50636.1| NADH dehydrogenase subunit 7 [Arabidopsis thaliana]
gi|153799812|gb|ABS50637.1| NADH dehydrogenase subunit 7 [Arabidopsis thaliana]
Length = 360
Score = 365 bits (937), Expect = 6e-99, Method: Composition-based stats.
Identities = 216/364 (59%), Positives = 273/364 (75%), Gaps = 4/364 (1%)
Query: 17 HPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQ 76
HPAAHGV RL+LE++GE+VER +PHIG LHRGTEKLIE KT+LQA+PY DR DYV+ M Q
Sbjct: 1 HPAAHGVSRLVLEMNGEVVERAEPHIGSLHRGTEKLIEYKTYLQALPYSDRSDYVSMMAQ 60
Query: 77 EHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEER 136
EHA++ AVEKLL E+P+R Q IRVL+ EI RI +H L +TT AMDVGALTP LW FEER
Sbjct: 61 EHAHSSAVEKLLNCEVPLRAQYIRVLFREITRISNHSLALTTHAMDVGALTPFLWAFEER 120
Query: 137 EKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRI 196
EKL+ FYER SG+RMHA++ RPGGV QD+P L DI + F S ++++ ++ TGNRI
Sbjct: 121 EKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCRDIDSFTQQFASRIDELEEMSTGNRI 180
Query: 197 FKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCY 256
+KQR V+IGTV + A WGFSGVM+RG G WD R++ PY+ + + D D+P+G GD Y
Sbjct: 181 WKQRLVDIGTVTAQQAKDWGFSGVMLRGPGVCWDSRRAAPYDVHDQSDLDVPVGTRGDRY 240
Query: 257 DRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFK 316
DRY +R+ EMR+S++II QC+N++ G + A D K+ PP R MK SMES IHHF+
Sbjct: 241 DRYCIRIEEMRQSLRIIVQCLNQM----PSGMIKADDRKLCPPSRCRMKLSMESSIHHFE 296
Query: 317 LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQ 376
LYTEG+ VP Y AVEAPKGEFGV+L+S+G N+PYR KIRAPG AH Q ++ + K H
Sbjct: 297 LYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSMSKHHM 356
Query: 377 LADV 380
ADV
Sbjct: 357 PADV 360
>gi|292488841|ref|YP_003531728.1| NADH dehydrogenase I subunit C/D [Erwinia amylovora CFBP1430]
gi|292899992|ref|YP_003539361.1| NADH dehydrogenase I chain C/D [Erwinia amylovora ATCC 49946]
gi|291199840|emb|CBJ46964.1| NADH dehydrogenase I chain C/D [Erwinia amylovora ATCC 49946]
gi|291554275|emb|CBA21595.1| NADH dehydrogenase I chain C/D [Erwinia amylovora CFBP1430]
gi|312173001|emb|CBX81256.1| NADH dehydrogenase I chain C/D [Erwinia amylovora ATCC BAA-2158]
Length = 599
Score = 365 bits (937), Expect = 7e-99, Method: Composition-based stats.
Identities = 149/395 (37%), Positives = 219/395 (55%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +
Sbjct: 209 TANEDFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 268
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI++P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 269 PYTDRIEYLGGCVNEMPYVLAVEKLAGIKVPERVDVIRVMLSELFRINSHLLYISTFIQD 328
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA++P + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 329 VGAMSPVFFAFTDRQKIYDVVEAITGFRMHPAWFRIGGVAHDLPKGWERLLREFLDWMPK 388
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L N + R + +E+A WG +G +R +G +D+RK +PY Y
Sbjct: 389 RLKAYEQTALKNSVLIGRAKGVSAYNMEEALAWGTTGAGLRATGLDFDVRKWRPYSGYEN 448
Query: 243 LDFDIPIGKHGDC-YDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF++PIG C Y R +++M EMR+S++I+ QC+N + GP A P PP +
Sbjct: 449 FDFEVPIGDGVSCAYSRVMLKMEEMRQSMRILEQCLNNMPA----GPFKADHPLTTPPPK 504
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + +EA KG YL SDG YR ++R P
Sbjct: 505 ERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPS 564
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ HLQ + + G ++D+ LGS+D V +VDR
Sbjct: 565 FPHLQQIPSVINGSLVSDLIVYLGSIDFVMSDVDR 599
>gi|322831986|ref|YP_004212013.1| NADH dehydrogenase I, D subunit [Rahnella sp. Y9602]
gi|321167187|gb|ADW72886.1| NADH dehydrogenase I, D subunit [Rahnella sp. Y9602]
Length = 599
Score = 365 bits (937), Expect = 8e-99, Method: Composition-based stats.
Identities = 148/395 (37%), Positives = 218/395 (55%), Gaps = 5/395 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP+AHG R+IL+LDGE + P +G HRG EK+ E +++ +
Sbjct: 209 TENEDFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDVGYHHRGAEKMGERQSWHSYI 268
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI P R IRV+ SE+ RI SHLL ++T D
Sbjct: 269 PYTDRIEYLGGCVNEMPYVLAVEKLAGIVTPDRVNTIRVMLSELFRINSHLLYISTFIQD 328
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P+
Sbjct: 329 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPKGWDRLLREFLDWMPA 388
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I R+ + +DA WG +G +R +G +D+RK +PY Y
Sbjct: 389 RLDSYVKAALKNTILIGRSKGVAAYNADDALAWGTTGAGLRATGIPFDVRKWRPYSGYEN 448
Query: 243 LDFDIPIGK-HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF++P G DCY R ++++ E+R+S++I+ QC + GP A P PP +
Sbjct: 449 FDFEVPTGDGVSDCYSRVMLKVEELRQSLRILEQCYKNM----PEGPFKADHPLTTPPPK 504
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + VEA KG YL SDG YR ++R P
Sbjct: 505 ERTLQHIETLITHFLQVSWGPVMPAQESFQMVEATKGINSYYLTSDGSTMSYRTRVRTPS 564
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ HLQ + + +G ++D+ LGS+D V +VDR
Sbjct: 565 FPHLQQIPSVIRGSLVSDLIVYLGSIDFVMSDVDR 599
>gi|288817732|ref|YP_003432079.1| NADH dehydrogenase chain D [Hydrogenobacter thermophilus TK-6]
gi|288787131|dbj|BAI68878.1| NADH dehydrogenase chain D [Hydrogenobacter thermophilus TK-6]
gi|308751331|gb|ADO44814.1| NADH-ubiquinone oxidoreductase chain 49kDa [Hydrogenobacter
thermophilus TK-6]
Length = 572
Score = 365 bits (937), Expect = 8e-99, Method: Composition-based stats.
Identities = 170/395 (43%), Positives = 242/395 (61%), Gaps = 16/395 (4%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
KK +N+GP HP HG + + +L+GE V + D +G LHRG EKL E++ + Q +
Sbjct: 192 KKKAQIVLNWGPLHPGTHGTMWFLFDLEGERVVQCDVILGQLHRGVEKLAESQMYNQFLV 251
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
Y DR+DY++ + A+ +AVE+LLGIE +P + + IR + SE+ RI SHLL + T A+
Sbjct: 252 YTDRMDYISALCSNQAWVVAVERLLGIEDIVPEKAKYIRTMMSELQRINSHLLWLGTYAL 311
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D+GALT L+ F+EREK+M E +G+R+ +Y R GGV D+P +E I + FP
Sbjct: 312 DLGALTIFLYAFKEREKIMDIIEGITGARLTISYPRVGGVRMDLPEGALEVIKAFIKRFP 371
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
L D ++LT NRI+ +RNV +G + ED + +G +G + RGSG A+DLRK +PY+ Y
Sbjct: 372 KELRDWENILTRNRIWLRRNVGVGVINKEDVYFYGLTGPVARGSGVAYDLRKLEPYDAYP 431
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
++FDIP+G++GD YDRYLVR+ EMR+SV+II QCV L P A P
Sbjct: 432 FVEFDIPVGENGDVYDRYLVRLEEMRQSVRIIEQCVAFLEKLPPSAPYFAES-----PDP 486
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+K S++ + G VP GE+Y++ E P+GE G Y+ S GG KPYR KI+
Sbjct: 487 KKIKLSLDGI---------GLKVPEGEIYSSGENPRGELGFYIYSTGGVKPYRVKIKPGS 537
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L L + +AD AIL SLD V GE+DR
Sbjct: 538 MYNLCVYPKLMQDRVIADAVAILASLDPVVGEIDR 572
>gi|313836203|gb|EFS73917.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL037PA2]
gi|314927638|gb|EFS91469.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL044PA1]
gi|314971363|gb|EFT15461.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL037PA3]
gi|328906300|gb|EGG26075.1| NADH dehydrogenase subunit D [Propionibacterium sp. P08]
Length = 432
Score = 365 bits (936), Expect = 8e-99, Method: Composition-based stats.
Identities = 168/412 (40%), Positives = 235/412 (57%), Gaps = 19/412 (4%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++ + +NFGP HP+ HGV+RLI+ELDGE V + IG LH G EK +E +T+ Q V
Sbjct: 22 ERGDETIIVNFGPSHPSTHGVMRLIIELDGESVSDLRVGIGFLHTGIEKNMEFRTWAQGV 81
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R +YVA E Y LAVEKLLG+ ++P R +++RV+ +E+ RI SHL+ V T
Sbjct: 82 TFMTRCNYVANFFNELVYCLAVEKLLGVTDDVPERARVLRVMITELNRISSHLIAVGTGG 141
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+++GA + G ERE ++ F + +G RM+ A+ RPGGV D+P ++ +
Sbjct: 142 LELGASSVAEVGLREREIILEFNQAVTGLRMNNAWIRPGGVATDLPETGLDQLRDLIKRM 201
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L +I N IFK R IG L G +G +R +G WDLRK+QPY Y
Sbjct: 202 EKYLPEIGQFCNENPIFKARTKGIGYADLSTCMALGVTGPALRATGLPWDLRKTQPYCDY 261
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
DFD+ DCY R+ +R+ EM +SV+I++QC+ RL DP I P
Sbjct: 262 DTYDFDVATWDTCDCYGRFRIRLEEMDQSVRILKQCLKRLEDTQGDRH-MVEDPHIAWPA 320
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
R M SME+LIHHFK+ TEG+ VP G+VY A+E GE G +L
Sbjct: 321 ELALGPDGQGNSNEHIRHIMGESMEALIHHFKIVTEGFRVPAGQVYQAIEGAGGELGCHL 380
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
ISDGG +PYR +R PG+ ++Q++ +C+G L+DV L SLD V G VDR
Sbjct: 381 ISDGGVRPYRSHLRDPGFINVQSLPAMCEGGMLSDVVPSLASLDPVMGGVDR 432
>gi|315654700|ref|ZP_07907606.1| NADH-quinone oxidoreductase subunit D [Mobiluncus curtisii ATCC
51333]
gi|315491164|gb|EFU80783.1| NADH-quinone oxidoreductase subunit D [Mobiluncus curtisii ATCC
51333]
Length = 457
Score = 365 bits (936), Expect = 9e-99, Method: Composition-based stats.
Identities = 168/414 (40%), Positives = 231/414 (55%), Gaps = 19/414 (4%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
++ + +N GP HP+ HGVLR+I+EL+GE V+ G LH G EK +E +T+ Q
Sbjct: 45 LESAHNDRIAVNLGPVHPSTHGVLRVIVELEGETVKDCRLGTGYLHTGIEKSMEYRTYNQ 104
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTT 118
V Y R+DYVAP E A+ LAVEK LG+ +P R IRVL E+ RI SHL+ V T
Sbjct: 105 GVAYCSRMDYVAPFFSEVAWCLAVEKALGVTDQVPRRASEIRVLLMELNRIASHLVAVGT 164
Query: 119 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
A ++GA T GF RE+++ +E +G RM+ Y RPGGV D+ + V+ I
Sbjct: 165 GANELGATTMLTTGFRGREEILRIFEHITGLRMNNTYMRPGGVSNDLLDDTVDMIREKLP 224
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
+ ++ DL+ N IF R N+G + L +G +R G D+RK QPY
Sbjct: 225 LVKRDIGEMQDLIMANPIFIGRMKNVGWLPLSTMMALSLTGPCLRAGGLPLDMRKLQPYC 284
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
Y FD+P H DCY R VR EM +S++I+ Q ++RL PV +DPK
Sbjct: 285 GYEAYTFDVPTRDHSDCYTRTEVRFEEMYQSLRIVYQVLDRLEQSEGE-PVMIADPKFTY 343
Query: 299 PKR----------------ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGV 342
P + + SME LIHHFKL TEG+ +P G+VYA VE KG GV
Sbjct: 344 PSKLTIGADGQGQDPEHVSHILGHSMEELIHHFKLVTEGFRIPPGQVYAQVEHAKGIQGV 403
Query: 343 YLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L++DGG PYR R P YA+LQ+ +C+G ++D+ +GS+D VFG VDR
Sbjct: 404 HLVTDGGTHPYRAHFRDPSYANLQSASMMCEGGLISDLVVSIGSIDPVFGGVDR 457
>gi|301056764|ref|YP_003794975.1| NADH dehydrogenase delta subunit [Bacillus anthracis CI]
gi|300378933|gb|ADK07837.1| NADH dehydrogenase delta subunit [Bacillus cereus biovar anthracis
str. CI]
Length = 366
Score = 365 bits (936), Expect = 1e-98, Method: Composition-based stats.
Identities = 155/391 (39%), Positives = 222/391 (56%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RL++++DGEI++ P IG LHRGTEK+ E+ + Q +PY
Sbjct: 3 RTEEMLLNVGPQHPSTHGVFRLVIKIDGEIIKEATPVIGYLHRGTEKIAESLQYTQIIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY++ M + AVE ++G+EIP R + +RVL E+GRI SHL+ T +D+G
Sbjct: 63 TDRMDYLSAMTNNYVICHAVETMMGLEIPERAEYLRVLAMELGRIASHLVWWGTNLLDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++P L+ F ERE ++ G+R+ Y R GGV D P +E + + L
Sbjct: 123 AVSPFLYAFREREMIINLLNELCGARLTFNYMRVGGVKWDAPDGWIEKVKEFVPYMREQL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
DL++GN IF R +G E+A + SG +R +G WDLRK +PY Y D
Sbjct: 183 AGYHDLVSGNEIFLNRVKGVGIYSAEEAISYSLSGANLRCTGVNWDLRKDEPYSIYDCFD 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FD+P+G GD +DRY+ RM E+ ES+KI+ Q V + K G V A PKI+
Sbjct: 243 FDVPVGSVGDAWDRYVCRMQEIEESLKIVEQAVQQFP---KEGAVLAKVPKII------- 292
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE + +E+P+GE G Y+ SDG +PYR K R P + +
Sbjct: 293 ------------------KAPKGEAFVRIESPRGEIGCYIASDGKKEPYRLKFRRPSFYN 334
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L KG +A++ ILG +DIV GEVD
Sbjct: 335 LQILPKLLKGENIANLITILGGVDIVLGEVD 365
>gi|256394765|ref|YP_003116329.1| NADH dehydrogenase subunit D [Catenulispora acidiphila DSM 44928]
gi|256360991|gb|ACU74488.1| NADH dehydrogenase I, D subunit [Catenulispora acidiphila DSM
44928]
Length = 426
Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats.
Identities = 169/389 (43%), Positives = 233/389 (59%), Gaps = 22/389 (5%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GPQHP+ HGVLRLILE++GE V IG LH G EK +E + + QAV +
Sbjct: 23 ERLVVNMGPQHPSTHGVLRLILEIEGESVIEARCGIGYLHTGIEKNLEYRNWTQAVTFLT 82
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
R DY+ P+ E Y AVE LLG+E +P R +IRVL E+ RI SHL+ + T M++G
Sbjct: 83 RADYLMPLFNETVYCRAVEALLGVEDDVPPRANVIRVLLMELNRISSHLVALATGGMELG 142
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A+T GF +RE ++ E +G+RM+ AY RPGG+ QD+P +VE I FP +
Sbjct: 143 AMTVMTNGFRDREPILDVLEAVTGNRMNHAYVRPGGLAQDLPDGVVEQIRALIVEFPKRI 202
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
D LL+ N +F +R +G + L G +G ++R +G A DLRKS PY Y D
Sbjct: 203 LDYERLLSANPVFVRRTKGVGYLDLPGCMALGVTGPVLRAAGLAHDLRKSDPYLGYETYD 262
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK---- 300
F++P D Y RYLVR+ EM ES++II Q ++RL + GPV +DPKI P
Sbjct: 263 FEVPTDTGCDAYGRYLVRLHEMTESLRIIEQALDRL----EPGPVMLADPKIAWPARLSL 318
Query: 301 ------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG 348
R M +SME+LIHHFKL TEG+ VP G+VY+ VE+P+GE G +++SDG
Sbjct: 319 GGDGLGNSEEWIRHIMAQSMEALIHHFKLVTEGFVVPAGQVYSFVESPRGELGAHVVSDG 378
Query: 349 GNKPYRCKIRAPGYAHLQAMEFLCKGHQL 377
G +P+R +R P + HLQA+ + +G L
Sbjct: 379 GTRPFRVHLRDPSFTHLQAVSAMAEGGML 407
>gi|329944205|ref|ZP_08292464.1| NADH dehydrogenase subunit D [Actinomyces sp. oral taxon 170 str.
F0386]
gi|328530935|gb|EGF57791.1| NADH dehydrogenase subunit D [Actinomyces sp. oral taxon 170 str.
F0386]
Length = 462
Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats.
Identities = 166/418 (39%), Positives = 235/418 (56%), Gaps = 23/418 (5%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
D+ ++ +N GP HP+ HGVLRL+LE DGE+V V G LH G EK +E +T++Q
Sbjct: 45 DRLRNDRIVLNMGPVHPSTHGVLRLVLEADGEVVTEVRVGTGYLHTGIEKNMEYRTWVQG 104
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ R+DYVAP QE YALAVE+LLGI ++P + + RVL E+ RI SH++ V T
Sbjct: 105 ETFVTRMDYVAPFFQEVGYALAVERLLGITDDVPEKATVTRVLLMELNRIASHVVAVGTG 164
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
++G T F RE ++ +E SG RM+ AY RPGG+ QDIP E +
Sbjct: 165 GNEMGGTTLMTIAFRCRENILKAFEMVSGLRMNHAYVRPGGLAQDIPEGFTEFVRSVMPD 224
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
++++ LL N I K R + +G + L G +G +R +G DLR+S PY
Sbjct: 225 IKQDIHELELLLLENPILKSRFIGVGEISLAGGLALGLTGPCLRAAGYPLDLRRSNPYCG 284
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRL-----LGKNKVGPVSASDP 294
Y DF +P K DCY+R +R+ E ES+KI+ QC++RL G++ +DP
Sbjct: 285 YETYDFRVPTYKVSDCYNRLRIRLDESYESLKIVSQCLDRLDEISARGEDPSNTTMVADP 344
Query: 295 KIVPPK----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
+ P R M SMESLIHHFKL T+G+ VP G+VY VE KG
Sbjct: 345 TVAWPARMAIATDGQGQSLEHVREIMGSSMESLIHHFKLVTQGFRVPAGQVYQTVEHAKG 404
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G++ +SDGG +PYR R P +++LQ++ + +G +AD+ L S+D V G VDR
Sbjct: 405 VLGIHAVSDGGTRPYRVHFRDPSFSNLQSLALMGEGGMIADLVPTLASIDPVLGGVDR 462
>gi|298346121|ref|YP_003718808.1| NADH dehydrogenase [Mobiluncus curtisii ATCC 43063]
gi|298236182|gb|ADI67314.1| NADH dehydrogenase (quinone) [Mobiluncus curtisii ATCC 43063]
Length = 457
Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats.
Identities = 167/414 (40%), Positives = 231/414 (55%), Gaps = 19/414 (4%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
++ + +N GP HP+ HGVLR+I+EL+GE V+ G LH G EK +E +T+ Q
Sbjct: 45 LESAHNDRIAVNLGPVHPSTHGVLRVIVELEGETVKDCRLGTGYLHTGIEKSMEYRTYNQ 104
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTT 118
V Y R+DYVAP E A+ LAVEK LG+ +P R IRVL E+ RI SHL+ V T
Sbjct: 105 GVAYCSRMDYVAPFFSEVAWCLAVEKALGVTDQVPRRASEIRVLLMELNRIASHLVAVGT 164
Query: 119 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
A ++GA T GF RE+++ +E +G RM+ Y RPGGV D+ + ++ I
Sbjct: 165 GANELGATTMLTTGFRGREEILRIFEHITGLRMNNTYMRPGGVSNDLLDDTIDMIREKLP 224
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
+ ++ DL+ N IF R N+G + L +G +R G D+RK QPY
Sbjct: 225 LVKRDIGEMQDLIMANPIFIGRMKNVGWLPLSTMMALSLTGPCLRAGGLPLDMRKLQPYC 284
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
Y FD+P H DCY R VR EM +S++I+ Q ++RL PV +DPK
Sbjct: 285 GYEAYTFDVPTRDHSDCYTRTEVRFEEMYQSLRIVYQVLDRLEQSEGE-PVMIADPKFAY 343
Query: 299 PKR----------------ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGV 342
P + + SME LIHHFKL TEG+ +P G+VYA VE KG GV
Sbjct: 344 PSKLTIGADGQGQDPEHVSHILGHSMEELIHHFKLVTEGFRIPPGQVYAQVEHAKGIQGV 403
Query: 343 YLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L++DGG PYR R P YA+LQ+ +C+G ++D+ +GS+D VFG VDR
Sbjct: 404 HLVTDGGTHPYRAHFRDPSYANLQSASMMCEGGLISDLVVSIGSIDPVFGGVDR 457
>gi|196036302|ref|ZP_03103700.1| NADH dehydrogenase (ubiquinone), D subunit [Bacillus cereus W]
gi|195991094|gb|EDX55064.1| NADH dehydrogenase (ubiquinone), D subunit [Bacillus cereus W]
Length = 366
Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats.
Identities = 158/391 (40%), Positives = 223/391 (57%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RL++++DGEI++ P IG LHRGTEK+ E+ + Q +PY
Sbjct: 3 RTEEMLLNVGPQHPSTHGVFRLVIKIDGEIIKEATPVIGYLHRGTEKIAESLQYTQIIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY++ M + AVE ++G+EIP R + +RVL E+GRI SHL+ T +D+G
Sbjct: 63 TDRMDYLSAMTNNYVICHAVETMMGLEIPERAEYLRVLAMELGRIASHLVWWGTNLLDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++P L+ F ERE ++ G+R+ Y R GGV D P +E + + L
Sbjct: 123 AVSPFLYAFREREMIINLLNELCGARLTFNYMRVGGVKWDAPDGWIEKVEEFVPYMREQL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
DL++GN IF R +G EDA + SG +R +G WDLRK +PY Y D
Sbjct: 183 AGYHDLVSGNEIFLNRVKGVGIYSEEDAISYSLSGANLRCTGVNWDLRKDEPYSIYDRFD 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDIP+G GD +DRY+ RM E+ ES+KI+ Q V + K G V A PKI+
Sbjct: 243 FDIPVGSVGDAWDRYVCRMQEIEESLKIVEQAVQQFP---KEGAVLAKVPKII------- 292
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
VP GE + +E+P+GE G Y+ SDG +PYR K R P + +
Sbjct: 293 ------------------KVPKGEAFVRIESPRGEIGCYIASDGKKEPYRLKFRRPSFYN 334
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L KG +A++ ILG +DIV GEVD
Sbjct: 335 LQILPKLLKGENIANLITILGGVDIVLGEVD 365
>gi|315635737|ref|ZP_07891000.1| NADH dehydrogenase I [Arcobacter butzleri JV22]
gi|315480034|gb|EFU70704.1| NADH dehydrogenase I [Arcobacter butzleri JV22]
Length = 544
Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats.
Identities = 145/394 (36%), Positives = 218/394 (55%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++ +N GP HPA+HG +R + ++GE + IG LHRG EK E T+ Q +
Sbjct: 155 EEIDDLMLLNVGPSHPASHGTIRNFVAMEGETITACVTEIGYLHRGFEKACEHHTYSQII 214
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DRL+Y + + Y+ AVE++LGI+I R ++IRV+ E+ RIL HL+ +D
Sbjct: 215 PYTDRLNYCSAILNNIGYSKAVEEMLGIDITPRAKMIRVIIGELSRILDHLVCNAANMVD 274
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+G LT + F R+ + +G+R+ Y R GG+ D+ +D+ +
Sbjct: 275 LGGLTNFWYLFSPRDMAYDLLSKLTGARLTNTYTRIGGLEFDLYDGFDKDLEEVLKAVEK 334
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ D L+ NRI+ R ++G +K + A G SG +R +G A DLRK +PY Y
Sbjct: 335 GVEDALSLIAHNRIYHDRTQDVGVIKADFALRNGISGPNLRAAGVACDLRKDKPYYGYEN 394
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DFD+ IG HGD YDR + R EMR+S KIIRQ + L G ++ P ++ P +
Sbjct: 395 FDFDVVIGSHGDVYDRMMCRFEEMRQSTKIIRQAMKNLPD----GAINVYAPGVILPSKK 450
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
D+ ++ESL++ FKL EG VP GE Y+ EA GE G +++SDG +PY+ K R P +
Sbjct: 451 DVYGNIESLMNQFKLTFEGIQVPKGEYYSFTEAANGELGFFIVSDGSGRPYKVKCRPPCF 510
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
L A + +G LAD + S++ + GE DR
Sbjct: 511 YSLAAYSKIVEGTMLADAVVTMASMNFIAGEFDR 544
>gi|324329245|gb|ADY24505.1| NADH dehydrogenase subunit D [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 366
Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats.
Identities = 158/391 (40%), Positives = 223/391 (57%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RL++++DGEI++ P IG LHRGTEK+ E+ + Q +PY
Sbjct: 3 RTEEMLLNVGPQHPSTHGVFRLVIKIDGEIIKEATPVIGYLHRGTEKIAESLQYTQIIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY++ M + AVE ++G+EIP R + +RVL E+GRI SHL+ T +D+G
Sbjct: 63 TDRMDYLSAMTNNYVICHAVETMMGLEIPERAEYLRVLAMELGRIASHLVWWGTNLLDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++P L+ F ERE ++ G+R+ Y R GGV D P +E + + L
Sbjct: 123 AVSPFLYAFREREMIINLLNELCGARLTFNYMRVGGVKWDAPDGWIEKVEEFVPYMREQL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
DL++GN IF R +G EDA + SG +R +G WDLRK +PY Y D
Sbjct: 183 TGYHDLVSGNEIFLNRVKGVGIYSEEDAISYSLSGANLRCTGVNWDLRKDEPYSIYDRFD 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDIP+G GD +DRY+ RM E+ ES+KI+ Q V + K G V A PKI+
Sbjct: 243 FDIPVGSVGDAWDRYVCRMKEIEESLKIVEQAVQQFP---KEGAVLAKVPKII------- 292
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
VP GE + +E+P+GE G Y+ SDG +PYR K R P + +
Sbjct: 293 ------------------KVPKGEAFVRIESPRGEIGCYIASDGKKEPYRLKFRRPSFYN 334
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L KG +A++ ILG +DIV GEVD
Sbjct: 335 LQILPKLLKGENIANLITILGGVDIVLGEVD 365
>gi|332975833|gb|EGK12711.1| NADH-quinone oxidoreductase subunit D [Desmospora sp. 8437]
Length = 371
Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats.
Identities = 153/391 (39%), Positives = 226/391 (57%), Gaps = 29/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RL+L +DGEI+ P IG LHRGTEKL E T+ Q +PY
Sbjct: 9 RTEEMLLNVGPQHPSTHGVFRLVLRIDGEIIREAQPRIGYLHRGTEKLAEDLTYNQIIPY 68
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY+ MN HA LAVEKL+ +EIP R + +RV+ +E+ R+ SHL+ T +D+G
Sbjct: 69 TDRMDYLNAMNNNHAVVLAVEKLMELEIPERAEYLRVITTELNRVASHLVWFGTYLLDIG 128
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
AL+P L+ F++REK++ + G+R+ Y R GGV D P +E +
Sbjct: 129 ALSPFLYAFKDREKIVELFNELCGARLTYNYMRVGGVKWDAPEGWLEKVKDLITYLRQQH 188
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
DL+ GN IF+ R +G A +G SG +R +G DLR+ +PY Y D
Sbjct: 189 QVYMDLVGGNEIFQARVKGVGRYDARTAVEYGLSGANLRCTGVKRDLRRDRPYSIYDRFD 248
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDIP+ +GDC DR+ +RM E+ +S++I+ Q V + GP+ A +++
Sbjct: 249 FDIPVSTNGDCRDRFFLRMEEILQSLRIVEQAVEGIPD----GPIMAKISRVI------- 297
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GEVY+AVE P+GE GV+L+S G +KP+R + P +++
Sbjct: 298 ------------------RPPAGEVYSAVENPRGELGVHLVSKGKDKPWRLHWKRPSFSN 339
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L +G +A++ AILG++DIV G+VD
Sbjct: 340 LQILPHLLEGENVANLIAILGAVDIVLGDVD 370
>gi|295131457|ref|YP_003582120.1| NADH dehydrogenase subunit D [Propionibacterium acnes SK137]
gi|291376844|gb|ADE00699.1| NADH dehydrogenase subunit D [Propionibacterium acnes SK137]
gi|313773333|gb|EFS39299.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL074PA1]
gi|313793605|gb|EFS41645.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL110PA1]
gi|313802884|gb|EFS44097.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL110PA2]
gi|313810764|gb|EFS48478.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL083PA1]
gi|313831075|gb|EFS68789.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL007PA1]
gi|313833205|gb|EFS70919.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL056PA1]
gi|313838152|gb|EFS75866.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL086PA1]
gi|314963237|gb|EFT07337.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL082PA1]
gi|314973941|gb|EFT18037.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL053PA1]
gi|314976869|gb|EFT20964.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL045PA1]
gi|314984991|gb|EFT29083.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL005PA1]
gi|315079686|gb|EFT51674.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL053PA2]
gi|315081014|gb|EFT52990.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL078PA1]
gi|315097692|gb|EFT69668.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL038PA1]
gi|327330840|gb|EGE72585.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL096PA2]
gi|327442867|gb|EGE89521.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL043PA2]
gi|327445259|gb|EGE91913.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL043PA1]
gi|327452504|gb|EGE99158.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL092PA1]
gi|328761548|gb|EGF75066.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL099PA1]
Length = 433
Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats.
Identities = 167/412 (40%), Positives = 234/412 (56%), Gaps = 19/412 (4%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++ + +NFGP HP+ HGV+RLI+ELDGE V + IG LH G EK +E +T+ Q V
Sbjct: 23 ERGDETVVVNFGPSHPSTHGVMRLIIELDGESVSDLRVGIGFLHTGIEKNMEFRTWTQGV 82
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R +YVA E Y LAVEKLLGI ++P R +++RV+ +E+ RI SHL+ V T
Sbjct: 83 TFMTRCNYVANFFNELVYCLAVEKLLGITDDVPERARVLRVMITELNRISSHLIAVGTGG 142
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+++GA + G ERE ++ F + +G RM+ A+ RPGGV D+P ++ +
Sbjct: 143 LELGASSVAEVGLREREIILEFNQAVTGLRMNNAWIRPGGVATDLPETGLDQLRDLIKRM 202
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L +I N IFK R IG L G +G +R +G WDLRK+QPY Y
Sbjct: 203 EKYLPEIGQFCNENPIFKARTQGIGYADLSTCMALGVTGPALRATGLPWDLRKTQPYCDY 262
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
DFD+ DCY R+ +R+ EM +SV+I++QC+ RL DP I P
Sbjct: 263 DTYDFDVATWDTCDCYGRFRIRLEEMDQSVRILKQCLKRLEDTQGDRH-MVEDPHIAWPA 321
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
R M SME+LIHHFK+ TEG+ VP G+VY +E GE G +L
Sbjct: 322 ELALGPDGQGNSNEHIRHIMGESMEALIHHFKIVTEGFRVPAGQVYQTIEGAGGELGCHL 381
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +PYR +R PG+ ++Q++ +C+G L+DV L SLD V G VDR
Sbjct: 382 VSDGGVRPYRSHLRDPGFVNVQSLPAMCEGGMLSDVVPSLASLDPVMGGVDR 433
>gi|297493924|gb|ADI40684.1| NADH dehydrogenase Fe-S protein 2 [Scotophilus kuhlii]
Length = 343
Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats.
Identities = 212/335 (63%), Positives = 265/335 (79%), Gaps = 4/335 (1%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
+ T+NFGPQHPAAHGVLRL++EL GE+V + DPHIGLLHRGTEKLIE KT+LQA+PYFDR
Sbjct: 13 NLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEHKTYLQALPYFDR 72
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
LDYV+ M E AY+LAVEKLL I+ P R Q IRVL+ EI R+L+H++ VTT A+D+GA+T
Sbjct: 73 LDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRLLNHIMAVTTHALDIGAMT 132
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
P W FEEREK+ FYER SG+RMHAAY RPGGVHQD+P L++DI + +F ++++
Sbjct: 133 PFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRIDEV 192
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
++LT NRI++ R V+IG V EDA +GFSGVM+RGSG WDLRK+QPY+ Y ++DFD+
Sbjct: 193 EEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVDFDV 252
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
PIG GDCYDRYL R+ EMR+S++II QC+N++ G + D K+ PPKRA+MK S
Sbjct: 253 PIGSRGDCYDRYLCRVEEMRQSLRIISQCLNKM----PPGEIKVDDAKVSPPKRAEMKTS 308
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGV 342
MESLIHHFKLYTEGY VP G Y A+EAPKGEFGV
Sbjct: 309 MESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 343
>gi|145219897|ref|YP_001130606.1| NADH dehydrogenase (ubiquinone) [Prosthecochloris vibrioformis DSM
265]
gi|218534451|sp|A4SF45|NUOD_PROVI RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|145206061|gb|ABP37104.1| NADH dehydrogenase subunit D [Chlorobium phaeovibrioides DSM 265]
Length = 400
Score = 364 bits (934), Expect = 1e-98, Method: Composition-based stats.
Identities = 165/397 (41%), Positives = 229/397 (57%), Gaps = 32/397 (8%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ ++ GPQHP+ HGVLRL DGE+V +P++G LHR EK E + VPY
Sbjct: 30 TEQMVLSMGPQHPSTHGVLRLECLTDGEVVTEAEPYLGYLHRCFEKHCEHVDYPAIVPYT 89
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DR+DY+A +N E AY +AVEKLL +EIP R + IRV+ SE+ RI SHL+ + T A+D+GA
Sbjct: 90 DRMDYLAGINSEMAYCVAVEKLLDLEIPRRVEFIRVIVSELNRIASHLVAIGTYAIDLGA 149
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
TP L+ F +RE ++ E A+G+RM Y GG+ D+P E + + + F
Sbjct: 150 FTPFLFCFRDREHILNMLEWATGARMLYNYIWVGGLAYDVPAGFNERVLEFVNYFRPKAL 209
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
++ LLT N IF +R IG + + A +G+SG M+RGSG WD+R++ PY Y ELDF
Sbjct: 210 ELQQLLTENEIFVKRTKGIGIMPADVAINYGWSGPMLRGSGVQWDIRRNDPYSIYPELDF 269
Query: 246 DIPIGK-----HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+P+ GDC R+LVR +E+ ES+KII QC++++ G DP+ PK
Sbjct: 270 AVPVPDGKLSVVGDCLSRHLVRALEIEESLKIIEQCIDKMPGTQG------FDPRSAVPK 323
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG-GNKPYRCKIRA 359
R GEVY E P+GE G Y+ SDG P RCK R+
Sbjct: 324 R--------------------VRPKAGEVYGRAENPRGELGFYIQSDGKSTSPLRCKARS 363
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +L AM+ L +G + D+ AI+GSLDIV GEVDR
Sbjct: 364 SCFVNLSAMKDLSRGQLIPDLVAIIGSLDIVLGEVDR 400
>gi|304390119|ref|ZP_07372073.1| NADH-quinone oxidoreductase subunit D [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|304326601|gb|EFL93845.1| NADH-quinone oxidoreductase subunit D [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
Length = 457
Score = 364 bits (934), Expect = 1e-98, Method: Composition-based stats.
Identities = 167/414 (40%), Positives = 231/414 (55%), Gaps = 19/414 (4%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
++ + +N GP HP+ HGVLR+I+EL+GE V+ G LH G EK +E +T+ Q
Sbjct: 45 LESAHNDRIAVNLGPVHPSTHGVLRVIVELEGETVKDCRLGTGYLHTGIEKSMEYRTYNQ 104
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTT 118
V Y R+DYVAP E A+ LAVEK LG+ +P R IRVL E+ RI SHL+ V T
Sbjct: 105 GVAYCSRMDYVAPFFSEVAWCLAVEKALGVTDQVPRRASEIRVLLMELNRIASHLVAVGT 164
Query: 119 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
A ++GA T GF RE+++ +E +G RM+ Y RPGGV D+ + ++ I
Sbjct: 165 GANELGATTMLTTGFRGREEILRIFEHITGLRMNNTYMRPGGVSNDLLDDTIDMIREKLP 224
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
+ ++ DL+ N IF R N+G + L +G +R G D+RK QPY
Sbjct: 225 LVKRDIGEMQDLIMANPIFIGRMKNVGWLPLSTMMALSLTGPCLRAGGLPLDMRKLQPYC 284
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
Y FD+P H DCY R VR EM +S++I+ Q ++RL PV +DPK
Sbjct: 285 GYEAYTFDVPTRDHSDCYTRTEVRFEEMYQSLRIVYQVLDRLEQSEGE-PVMIADPKFAY 343
Query: 299 PKR----------------ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGV 342
P + + SME LIHHFKL TEG+ +P G+VYA VE KG GV
Sbjct: 344 PSKLTIGADGQGQDPEHVSHILGHSMEELIHHFKLVTEGFRIPPGQVYAQVEHAKGIQGV 403
Query: 343 YLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L++DGG PYR R P YA+LQ+ +C+G ++D+ +GS+D VFG VDR
Sbjct: 404 HLVTDGGTHPYRAHFRDPSYANLQSASMMCEGGLISDLVVSIGSIDPVFGGVDR 457
>gi|254724276|ref|ZP_05186060.1| NADH dehydrogenase subunit D [Bacillus anthracis str. A1055]
Length = 366
Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats.
Identities = 155/391 (39%), Positives = 221/391 (56%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV R ++++DGEI++ P IG LHRGTEK+ E+ + Q +PY
Sbjct: 3 RTEEMLLNVGPQHPSTHGVFRFVIKIDGEIIKEATPVIGYLHRGTEKIAESLQYTQIIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY++ M + AVE ++G+EIP R + +RVL E+GRI SHL+ T +D+G
Sbjct: 63 TDRMDYLSAMTNNYVICHAVETMMGLEIPERAEYLRVLAMELGRIASHLVWWGTNLLDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++P L+ F ERE ++ G+R+ Y R GGV D P +E + + L
Sbjct: 123 AVSPFLYAFREREMIINLLNELCGARLTFNYMRVGGVKWDAPDGWIEKVKEFVPYMREQL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
DL++GN IF R +G E+A + SG +R +G WDLRK +PY Y D
Sbjct: 183 AGYHDLVSGNEIFLNRVKGVGIYSAEEAISYSLSGANLRCTGVNWDLRKDEPYSIYDRFD 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDIP+G GD +DRY+ RM E+ ES+KI+ Q V + K G V A PKI+
Sbjct: 243 FDIPVGSVGDAWDRYVCRMQEIEESLKIVEQAVQQFP---KEGAVLAKVPKII------- 292
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE + +E+P+GE G Y+ SDG +PYR K R P + +
Sbjct: 293 ------------------KAPKGEAFVRIESPRGEIGCYIASDGKKEPYRLKFRRPSFYN 334
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L KG +A++ ILG +DIV GEVD
Sbjct: 335 LQILPKLLKGENIANLITILGGVDIVLGEVD 365
>gi|195953132|ref|YP_002121422.1| NADH-ubiquinone oxidoreductase chain 49kDa [Hydrogenobaculum sp.
Y04AAS1]
gi|218528049|sp|B4U8I3|NUOCD_HYDS0 RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|195932744|gb|ACG57444.1| NADH-ubiquinone oxidoreductase chain 49kDa [Hydrogenobaculum sp.
Y04AAS1]
Length = 571
Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats.
Identities = 166/395 (42%), Positives = 240/395 (60%), Gaps = 16/395 (4%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
KK +N+GP HP HG + + +L+GE + + D +G LHRG EKL E + + Q +
Sbjct: 191 KKKAQVVLNWGPLHPGTHGTMWFLFDLEGERIVQTDVILGQLHRGVEKLAEHEPYQQFLV 250
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
Y DR+DY++ + A+ +AVE+LLGIE +PI+ + IR + SE+ RI SHLL + T A+
Sbjct: 251 YTDRMDYISALCSNQAWTVAVERLLGIEDIVPIKAKYIRTMMSELQRINSHLLWLGTYAL 310
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D+GALT L+ F+EREK+M E +G+R+ +Y R GGV D+P +E I + FP
Sbjct: 311 DLGALTIFLYAFKEREKIMDIIEGITGARLTISYTRIGGVRMDLPEGALEVIESFIKFFP 370
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
L D +L+ NRI+ +RN N+G + ED + +G +G + RGSG +D+RK +PY+ Y
Sbjct: 371 KELKDWEKILSRNRIWVKRNKNVGVLTKEDIYFYGLTGAVARGSGVFYDIRKLEPYDAYG 430
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
++FD+P+G++GDCYDRYLVR+ EM++S++II QCV +L + P
Sbjct: 431 MVEFDVPLGENGDCYDRYLVRIEEMKQSIRIIEQCVQKLKTMSPNEPF------------ 478
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
M S + L G VPVGE+Y++ E P+GE G Y+ S GG KPYR KIR
Sbjct: 479 --MAESQDPKKLRLTLDGIGLKVPVGEIYSSGENPRGELGFYINSKGGLKPYRVKIRPGS 536
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +L L + +AD IL SLD V GEVDR
Sbjct: 537 FYNLCVYPHLMENRYVADAVTILASLDPVVGEVDR 571
>gi|262197695|ref|YP_003268904.1| NADH dehydrogenase I, D subunit [Haliangium ochraceum DSM 14365]
gi|262081042|gb|ACY17011.1| NADH dehydrogenase I, D subunit [Haliangium ochraceum DSM 14365]
Length = 415
Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats.
Identities = 160/392 (40%), Positives = 230/392 (58%), Gaps = 6/392 (1%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
S TIN GP HPA HG +R++L +DGE V D G LHR EK E T+ Q PY
Sbjct: 27 SELMTINMGPSHPAMHGTVRIVLTVDGERVVHGDVQPGYLHRCFEKEAEHATYTQIFPYT 86
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DRL+YV+PM YA+AVEKLLGI EIP R + IRVL SE+ R+ HL V AM++
Sbjct: 87 DRLNYVSPMINNCGYAMAVEKLLGIHQEIPERAEYIRVLVSEVSRVTDHLTCVGASAMEL 146
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA T L+ + RE E SG+R+ +Y R GGV +D+ P E +
Sbjct: 147 GAFTAFLYAVKAREWFFGLLEELSGARLTYSYVRVGGVVRDLSPGFCEKLEDLLKKTEEV 206
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L+++ LL NRIF+ R +G +DA +G +G +R SG +D+RK PY Y
Sbjct: 207 LDEVEGLLNNNRIFRDRMEGVGAFSADDAIRYGLTGPTLRASGVDYDVRKDYPYSVYERF 266
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FD+P+G GDCYDRYLVR+ E+++S++I+RQ + L GPV DP++ P++ +
Sbjct: 267 EFDVPVGTTGDCYDRYLVRVEEIKQSIRILRQAMATL----PEGPVIHPDPRVAMPEKRE 322
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
++E++I HFK +G VP E Y VE GE G ++ SDG +PY+C +R+P +
Sbjct: 323 TYNTIEAMIRHFKHIVDGIRVPPAEAYCFVEGGNGELGFFIKSDGTGRPYKCYVRSPSFV 382
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + + +G ++D+ I G ++++ GE D
Sbjct: 383 TLQTVSEIIRGAFISDIVPIFGMINMIGGECD 414
>gi|90425544|ref|YP_533914.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Rhodopseudomonas palustris BisB18]
gi|122475342|sp|Q20Z41|NUOCD_RHOPB RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|90107558|gb|ABD89595.1| NADH dehydrogenase I, D subunit [Rhodopseudomonas palustris BisB18]
Length = 581
Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats.
Identities = 156/390 (40%), Positives = 229/390 (58%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N+GP A HGV R++L LDGE + P IG HRG EK+ E +++ Q +PY D
Sbjct: 196 ELMILNYGPHSMATHGVFRIVLALDGEEIVAARPDIGFHHRGAEKMGERQSWHQYIPYTD 255
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+DY+ + E Y AVE+L GI +P R Q +R++ EI RI++HLL T A D GA+
Sbjct: 256 RIDYLGGVMGEMPYLQAVERLCGIAVPERAQTVRIMLCEIFRIMNHLLFYGTLAQDTGAM 315
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
+P + F +RE+ E +G+RMH +FR GG+ D+P + + D P+ L+D
Sbjct: 316 SPVFYMFTDRERGYRVIEAITGARMHPGWFRIGGLAADLPEGWDALVRDFLDWMPARLDD 375
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
++ N IF+ R V I A+ WG +G +R +G WD+RK++PY Y +F+
Sbjct: 376 YEGMVMRNEIFRARTVGIAAYDTATAFDWGITGPGLRATGCGWDMRKARPYGGYQNFEFE 435
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+P G GDCYDR VR+ E+R+S++IIRQC++ + GP+ A P PP R M
Sbjct: 436 VPTGHRGDCYDRARVRVDEIRQSLRIIRQCLDHMPA----GPIKADHPLTTPPPRERMLH 491
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+E++IHHF + G VPVGE VE+ +G ++SDG YR +IR P +AHLQ
Sbjct: 492 DIETMIHHFVGSSWGPVVPVGEATGQVESVRGLTQYAVVSDGETTAYRTRIRTPSFAHLQ 551
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ + G +AD+ A LGS+D V +VDR
Sbjct: 552 SIATIAPGLTVADLVAYLGSIDYVMSDVDR 581
>gi|30265320|ref|NP_847697.1| NADH dehydrogenase subunit D [Bacillus anthracis str. Ames]
gi|47530858|ref|YP_022207.1| NADH dehydrogenase subunit D [Bacillus anthracis str. 'Ames
Ancestor']
gi|49188133|ref|YP_031386.1| NADH dehydrogenase subunit D [Bacillus anthracis str. Sterne]
gi|65317273|ref|ZP_00390232.1| COG0649: NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Bacillus
anthracis str. A2012]
gi|165869878|ref|ZP_02214535.1| NADH dehydrogenase (ubiquinone), D subunit [Bacillus anthracis str.
A0488]
gi|167636397|ref|ZP_02394697.1| NADH dehydrogenase (ubiquinone), D subunit [Bacillus anthracis str.
A0442]
gi|167641721|ref|ZP_02399965.1| NADH dehydrogenase (ubiquinone), D subunit [Bacillus anthracis str.
A0193]
gi|170689321|ref|ZP_02880515.1| NADH dehydrogenase (ubiquinone), D subunit [Bacillus anthracis str.
A0465]
gi|170708843|ref|ZP_02899278.1| NADH dehydrogenase (ubiquinone), D subunit [Bacillus anthracis str.
A0389]
gi|177654054|ref|ZP_02936064.1| NADH dehydrogenase (ubiquinone), D subunit [Bacillus anthracis str.
A0174]
gi|190567667|ref|ZP_03020579.1| NADH dehydrogenase (ubiquinone), D subunit [Bacillus anthracis
Tsiankovskii-I]
gi|218906474|ref|YP_002454308.1| NADH dehydrogenase (ubiquinone), D subunit [Bacillus cereus AH820]
gi|225867274|ref|YP_002752652.1| NADH dehydrogenase (ubiquinone), D subunit [Bacillus cereus
03BB102]
gi|227818060|ref|YP_002818069.1| NADH dehydrogenase (ubiquinone), D subunit [Bacillus anthracis str.
CDC 684]
gi|228936581|ref|ZP_04099376.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
gi|229602606|ref|YP_002869512.1| NADH dehydrogenase (ubiquinone), D subunit [Bacillus anthracis str.
A0248]
gi|254686280|ref|ZP_05150139.1| NADH dehydrogenase subunit D [Bacillus anthracis str. CNEVA-9066]
gi|254735225|ref|ZP_05192934.1| NADH dehydrogenase subunit D [Bacillus anthracis str. Western North
America USA6153]
gi|254744429|ref|ZP_05202109.1| NADH dehydrogenase subunit D [Bacillus anthracis str. Kruger B]
gi|254755733|ref|ZP_05207766.1| NADH dehydrogenase subunit D [Bacillus anthracis str. Vollum]
gi|81580963|sp|Q81K03|NUOD_BACAN RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|30259998|gb|AAP29183.1| NADH dehydrogenase (ubiquinone), D subunit [Bacillus anthracis str.
Ames]
gi|47506006|gb|AAT34682.1| NADH dehydrogenase (ubiquinone), D subunit [Bacillus anthracis str.
'Ames Ancestor']
gi|49182060|gb|AAT57436.1| NADH dehydrogenase I, D subunit [Bacillus anthracis str. Sterne]
gi|164714201|gb|EDR19721.1| NADH dehydrogenase (ubiquinone), D subunit [Bacillus anthracis str.
A0488]
gi|167510346|gb|EDR85748.1| NADH dehydrogenase (ubiquinone), D subunit [Bacillus anthracis str.
A0193]
gi|167528231|gb|EDR91013.1| NADH dehydrogenase (ubiquinone), D subunit [Bacillus anthracis str.
A0442]
gi|170126243|gb|EDS95135.1| NADH dehydrogenase (ubiquinone), D subunit [Bacillus anthracis str.
A0389]
gi|170666689|gb|EDT17458.1| NADH dehydrogenase (ubiquinone), D subunit [Bacillus anthracis str.
A0465]
gi|172080937|gb|EDT66016.1| NADH dehydrogenase (ubiquinone), D subunit [Bacillus anthracis str.
A0174]
gi|190561083|gb|EDV15056.1| NADH dehydrogenase (ubiquinone), D subunit [Bacillus anthracis
Tsiankovskii-I]
gi|218540081|gb|ACK92479.1| NADH dehydrogenase (ubiquinone), D subunit [Bacillus cereus AH820]
gi|225786746|gb|ACO26963.1| NADH dehydrogenase (ubiquinone), D subunit [Bacillus cereus
03BB102]
gi|227002709|gb|ACP12452.1| NADH dehydrogenase (ubiquinone), D subunit [Bacillus anthracis str.
CDC 684]
gi|228823096|gb|EEM68933.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
gi|229267014|gb|ACQ48651.1| NADH dehydrogenase (ubiquinone), D subunit [Bacillus anthracis str.
A0248]
Length = 366
Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats.
Identities = 156/391 (39%), Positives = 222/391 (56%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RL++++DGEI++ P IG LHRGTEK+ E+ + Q +PY
Sbjct: 3 RTEEMLLNVGPQHPSTHGVFRLVIKIDGEIIKEATPVIGYLHRGTEKIAESLQYTQIIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY++ M + AVE ++G+EIP R + +RVL E+GRI SHL+ T +D+G
Sbjct: 63 TDRMDYLSAMTNNYVICHAVETMMGLEIPERAEYLRVLAMELGRIASHLVWWGTNLLDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++P L+ F ERE ++ G+R+ Y R GGV D P +E + + L
Sbjct: 123 AVSPFLYAFREREMIINLLNELCGARLTFNYMRVGGVKWDAPDGWIEKVKEFVPYMREQL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
DL++GN IF R +G E+A + SG +R +G WDLRK +PY Y D
Sbjct: 183 AGYHDLVSGNEIFLNRVKGVGIYSAEEAISYSLSGANLRCTGVNWDLRKDEPYSIYDRFD 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDIP+G GD +DRY+ RM E+ ES+KI+ Q V + K G V A PKI+
Sbjct: 243 FDIPVGSVGDAWDRYVCRMQEIEESLKIVEQAVQQFP---KEGAVLAKVPKII------- 292
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE + +E+P+GE G Y+ SDG +PYR K R P + +
Sbjct: 293 ------------------KAPKGEAFVRIESPRGEIGCYIASDGKKEPYRLKFRRPSFYN 334
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L KG +A++ ILG +DIV GEVD
Sbjct: 335 LQILPKLLKGENIANLITILGGVDIVLGEVD 365
>gi|320102223|ref|YP_004177814.1| NADH dehydrogenase (quinone) [Isosphaera pallida ATCC 43644]
gi|319749505|gb|ADV61265.1| NADH dehydrogenase (quinone) [Isosphaera pallida ATCC 43644]
Length = 413
Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats.
Identities = 166/398 (41%), Positives = 226/398 (56%), Gaps = 7/398 (1%)
Query: 3 KKKSRSF--TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ +++ + T+NFGPQHPA H LRL+L++DGE + PHIG LH G EKL E F Q
Sbjct: 19 RLETKPYLWTLNFGPQHPATHTTLRLVLQIDGETIVHATPHIGYLHSGFEKLGEHLNFNQ 78
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
V DR +Y++P E A+ AVEKLLGIE+ R + IRV+ E+ RI HLL A
Sbjct: 79 YVTVVDRKNYISPPYNEIAWHNAVEKLLGIELTPRCKTIRVIIGELSRICDHLLCTGACA 138
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+D+G T L+ F +RE + YE SG R H Y R GGV D +++E + +
Sbjct: 139 LDLGGFTAFLYAFNQRELIYDVYEEMSGYRFHPGYTRVGGVLHDFNDKVIEKVKLVLQTT 198
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P AL D L NRIF R +G + E+A W +G + R SG DLRK QPY Y
Sbjct: 199 PKALADFERLCMRNRIFVDRTRGVGVLTREEAINWSATGPIARASGVTTDLRKDQPYLDY 258
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
DF++P GDCY R+ VR+ EM +S++II+Q + L ++ K+ P
Sbjct: 259 DRYDFEVPYATEGDCYARFQVRIEEMHQSLRIIKQAIEDLPDGPVNVSIAD---KVPLPD 315
Query: 301 RADMKRSMESLIHHFKLYTEGYHV--PVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
+ + SME LI HF+L P EVYAAVEAP GE G YL++DG +R + R
Sbjct: 316 KGTVYNSMEGLIQHFELIMPNRQTFSPKNEVYAAVEAPNGELGYYLVADGTMTAWRTRTR 375
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
P + H Q L +GH ++DV A+LGSL+I+ E+DR
Sbjct: 376 PPSFIHFQLFPKLIEGHVISDVVAVLGSLNIIAAELDR 413
>gi|21673599|ref|NP_661664.1| NADH dehydrogenase I, 49 kDa subunit [Chlorobium tepidum TLS]
gi|21646713|gb|AAM72006.1| NADH dehydrogenase I, 49 kDa subunit [Chlorobium tepidum TLS]
Length = 368
Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats.
Identities = 164/394 (41%), Positives = 225/394 (57%), Gaps = 32/394 (8%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
++ GPQHP+ HGVLRL DGE+V +P++G LHR EK E + VPY DR+
Sbjct: 1 MVLSMGPQHPSTHGVLRLECITDGEVVVEAEPYLGYLHRCFEKHCEKIDYPAIVPYTDRM 60
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
DY+A MN E AY + VEKLL IEIP R + IRV+ +E+ RI SHL+ + T A+D+GA TP
Sbjct: 61 DYLAGMNNELAYCITVEKLLDIEIPRRVEFIRVIVAELNRIASHLVAIGTYAIDLGAFTP 120
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
L+ F +RE +M E SG+RM Y GG+ D+P + + + F ++
Sbjct: 121 FLFCFRDREHIMSLLEWISGARMLYNYIWIGGLAYDVPADFKTRVAEFVTYFRPKAKELY 180
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
LLT N IF +R +IG + + A +G+SG M+RGSG WDLR++ PY Y ELDFD+P
Sbjct: 181 QLLTENEIFVKRTYDIGIMPADVAINYGWSGPMLRGSGVKWDLRRNDPYSVYPELDFDVP 240
Query: 249 IGK-----HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+ GDC R+LVR +EM ES+KII QC++++ + + KI
Sbjct: 241 VPDGKFSVVGDCLSRHLVRALEMEESLKIIEQCLDKMPEEPNFNSRALIPKKI------- 293
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG-GNKPYRCKIRAPGY 362
GEVY E P+GE G Y++SDG P RCK R+ +
Sbjct: 294 -------------------RPKAGEVYGRAENPRGELGYYIVSDGKSTSPVRCKARSSCF 334
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L AM+ L KG + D+ AI+GS+DIV GEVDR
Sbjct: 335 VNLSAMKDLSKGQLIPDLVAIIGSIDIVLGEVDR 368
>gi|313895967|ref|ZP_07829521.1| respiratory-chain NADH dehydrogenase, 49 Kd subunit [Selenomonas
sp. oral taxon 137 str. F0430]
gi|312975392|gb|EFR40853.1| respiratory-chain NADH dehydrogenase, 49 Kd subunit [Selenomonas
sp. oral taxon 137 str. F0430]
Length = 365
Score = 363 bits (932), Expect = 2e-98, Method: Composition-based stats.
Identities = 154/391 (39%), Positives = 226/391 (57%), Gaps = 29/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ ++T+N GPQHP+ HGVL++ LELDGE + + P +G LHRG EKL+E +T++Q +PY
Sbjct: 3 RTETYTLNMGPQHPSTHGVLQVQLELDGERILKATPVMGYLHRGIEKLLEDRTYIQGLPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDYV+ MN YALAVE+L GIE R + IRV+ +E+ RI SHL+ + T A D+G
Sbjct: 63 TDRLDYVSSMNNNFGYALAVEELAGIETTRRAEYIRVIMAELNRINSHLIFIGTLANDLG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A T L+ F +REK++ + G+R Y R GGV +D+ PE I + D P L
Sbjct: 123 ASTGMLYCFRDREKILDIFNLVCGARQTFHYIRIGGVKEDLTPEAETMIRAFLDEVPMFL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
++ + LLTGN IF +R V + E+A + +G +R +G +DLRK Y Y E +
Sbjct: 183 DEYNKLLTGNEIFVRRIVGTSPMTTEEALRYNMTGPNLRATGLPFDLRKVDGYSVYDEFE 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FD+P+G HGD +DRY V++ E+ +S +IIRQ + L + +G V
Sbjct: 243 FDVPVGVHGDNWDRYQVKLGEIAQSARIIRQAIEGLPAGDFMGKVPKVVKPPK------- 295
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
GEV++ E +GE G Y++SDG KPYR IR P + +
Sbjct: 296 ----------------------GEVFSRTEGTRGELGFYIVSDGTPKPYRIHIRRPSFVN 333
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+Q ++ +C+G + D A S+D + GEVD
Sbjct: 334 MQGLDAMCRGMLIGDSVAAYSSIDPIMGEVD 364
>gi|315657376|ref|ZP_07910258.1| NADH-quinone oxidoreductase subunit D [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|315491848|gb|EFU81457.1| NADH-quinone oxidoreductase subunit D [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length = 457
Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats.
Identities = 167/414 (40%), Positives = 231/414 (55%), Gaps = 19/414 (4%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
++ + +N GP HP+ HGVLR+I+EL+GE V+ G LH G EK +E +T+ Q
Sbjct: 45 LESAHNDRIAVNLGPVHPSTHGVLRVIVELEGETVKDCRLGTGYLHTGIEKSMEYRTYNQ 104
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTT 118
V Y R+DYVAP E A+ LAVEK LG+ +P R IRVL E+ RI SHL+ V T
Sbjct: 105 GVAYCSRMDYVAPFFSEVAWCLAVEKALGVTDQVPRRASEIRVLLMELNRIASHLVAVGT 164
Query: 119 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
A ++GA T GF RE+++ +E +G RM+ Y RPGGV D+ + ++ I
Sbjct: 165 GANELGATTMLTTGFRGREEILRIFEHITGLRMNNTYMRPGGVSNDLLDDTIDMIREKLP 224
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
+ ++ DL+ N IF R N+G + L +G +R G D+RK QPY
Sbjct: 225 LVKRDIGEMQDLIMANPIFIGRMKNVGWLPLSTMMALSLTGPCLRAGGLPLDMRKLQPYC 284
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
Y FD+P H DCY R VR EM +S++I+ Q ++RL PV +DPK
Sbjct: 285 GYEAYTFDVPARDHSDCYTRTEVRFEEMYQSLRIVYQVLDRLEQSEGE-PVMIADPKFAY 343
Query: 299 PKR----------------ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGV 342
P + + SME LIHHFKL TEG+ +P G+VYA VE KG GV
Sbjct: 344 PSKLTIGADGQGQDPEHVSHILGHSMEELIHHFKLVTEGFRIPPGQVYAQVEHAKGIQGV 403
Query: 343 YLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L++DGG PYR R P YA+LQ+ +C+G ++D+ +GS+D VFG VDR
Sbjct: 404 HLVTDGGTHPYRAHFRDPSYANLQSASMMCEGGLISDLVVSIGSIDPVFGGVDR 457
>gi|262376775|ref|ZP_06070003.1| NADH dehydrogenase (quinone), D subunit [Acinetobacter lwoffii
SH145]
gi|262308485|gb|EEY89620.1| NADH dehydrogenase (quinone), D subunit [Acinetobacter lwoffii
SH145]
Length = 595
Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats.
Identities = 147/393 (37%), Positives = 209/393 (53%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+N GP HP+AHG R+IL+LDGE V+ P IG HRG EK+ E +T+ +P
Sbjct: 207 ADEDFMFLNLGPNHPSAHGAFRVILQLDGEEVKDCVPDIGYHHRGVEKMAERQTWHSFIP 266
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ Q Y L VE++ GI +P R Q IRV+ SE+ RI +HLL + T D
Sbjct: 267 YTDRVDYLGGCAQNMPYVLGVEQMAGITVPDRAQCIRVMMSELFRINNHLLFIGTAIQDA 326
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP + F +R+K+ E +G RMH A+FR GG D+P I D P
Sbjct: 327 GGMTPVFYMFADRQKIYDAIEAITGYRMHPAWFRIGGTAHDLPNNWQHLIREILDWMPKR 386
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L + N +F R N+ + A WG +G +R +G +D+RK +PY Y
Sbjct: 387 LKEYHTAALKNSVFVGRTRNVAQYDAKSALAWGVTGTGLRATGIDFDVRKYRPYSGYENY 446
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DF++P+ GD Y R +V E+ ES+KII+QC++ + G A P VPP +
Sbjct: 447 DFEVPVEYEGDAYARVIVHYREIEESLKIIKQCLDNM----PSGAYKADHPLAVPPPKDK 502
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ +E+LI HF + G +P GE E KG YL SD YR +IR P +
Sbjct: 503 TLQDIETLITHFLSVSWGPVMPAGEASVMAEVVKGASNYYLTSDKSTMSYRTRIRTPTFT 562
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ M + G ++D+ L ++D+V +VDR
Sbjct: 563 HLQQMPSVINGSLMSDLIIYLATIDVVMADVDR 595
>gi|304407746|ref|ZP_07389397.1| NADH dehydrogenase I, D subunit [Paenibacillus curdlanolyticus YK9]
gi|304343229|gb|EFM09072.1| NADH dehydrogenase I, D subunit [Paenibacillus curdlanolyticus YK9]
Length = 368
Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats.
Identities = 143/395 (36%), Positives = 225/395 (56%), Gaps = 28/395 (7%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M ++ +N GPQHP+ HGV R+I++LDGE+++ P +G LHRGTEKL E F Q
Sbjct: 1 MGAIRTEELLLNVGPQHPSTHGVFRIIVKLDGEVIKEAIPVMGYLHRGTEKLAENLNFTQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY DR+DYV+ M + AVEK++G+E+P R + +R++ E+ R+ SHL+ T
Sbjct: 61 IIPYTDRMDYVSAMTNNYVLCHAVEKMMGLEVPERAEFLRLIVMELQRVASHLVWWGTYL 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+D+GA++P L+ F +RE ++ + G+R+ Y R GGV D PP ++ + +
Sbjct: 121 LDIGAMSPFLYAFRDRETIVQLFNELCGARLTYNYMRVGGVKWDAPPGWLDKVREFIPYM 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L + L++GN IF R +G E A +G SG +R +G WDLR+ +PY Y
Sbjct: 181 EQKLEEYDRLVSGNEIFLARIRGVGRYDAETAISFGLSGANLRCTGVQWDLRRKEPYSLY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+FD+P+G +GDCYDRY++R+ E+R+S++I+RQ + + G P+ +
Sbjct: 241 DRFEFDVPVGTNGDCYDRYVLRLEEIRQSLRILRQALEQFPEG---GETMGKVPRAI--- 294
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
P GE+Y ++E+P+GE G +++S G +PYR K R P
Sbjct: 295 ----------------------RPPAGEIYVSIESPRGEIGCHIVSKGKAEPYRLKFRRP 332
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ +LQ + L G + ++ ILG +DIV GEVD
Sbjct: 333 SFVNLQILPKLLVGETMTNLITILGGIDIVVGEVD 367
>gi|328952911|ref|YP_004370245.1| NAD(P)H-quinone oxidoreductase subunit H [Desulfobacca acetoxidans
DSM 11109]
gi|328453235|gb|AEB09064.1| NAD(P)H-quinone oxidoreductase subunit H [Desulfobacca acetoxidans
DSM 11109]
Length = 371
Score = 363 bits (931), Expect = 3e-98, Method: Composition-based stats.
Identities = 154/392 (39%), Positives = 226/392 (57%), Gaps = 28/392 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ ++F +N GPQHP+ HGVLR++LE+DGE + DP IG HR EK+ E +T+ Q +P
Sbjct: 8 EEKTFYLNLGPQHPSTHGVLRIVLEMDGEFIINSDPVIGYGHRAHEKMAELRTYQQYLPN 67
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
R+DY+ + Y +AVEKL GI P R + IRV+ SE+ R+ SHLL MD+G
Sbjct: 68 MGRVDYLHALAYNQCYCMAVEKLAGITPPERAEFIRVITSELNRLSSHLLWFGAYLMDLG 127
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A TP L+ F++RE+++ +R +GSR+ ++R GGV DI E + S
Sbjct: 128 AFTPFLYCFDDREQILDLLDRLTGSRLTYCFYRFGGVPVDIDDEFTAGCRAFIQRLRSRW 187
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+D DL+T N IF R ++G + E A +G +G +RGSG A+D+R+S+P+ Y D
Sbjct: 188 DDYDDLVTKNVIFIHRTRDVGILTPELALKYGVTGPNLRGSGIAYDIRRSEPFSAYPLFD 247
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F+IP G+ GD DRYLVR+ EM +S++II Q ++++ GP+
Sbjct: 248 FEIPTGERGDIMDRYLVRLREMEQSLRIIEQALDKI----PNGPIM-------------- 289
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
+ + GEVY AVE +GEFG Y++S G KPYR K+R P +++
Sbjct: 290 ----------AEKVPKRLKPAEGEVYTAVETARGEFGCYIVSKGDVKPYRIKLRVPCFSN 339
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
L + L K +AD AILGS+D+V E+DR
Sbjct: 340 LSILPELIKNTMVADAVAILGSIDLVIPEIDR 371
>gi|222098768|ref|YP_002532826.1| NADH dehydrogenase subunit d [Bacillus cereus Q1]
gi|221242827|gb|ACM15537.1| NADH dehydrogenase I, D subunit [Bacillus cereus Q1]
Length = 366
Score = 363 bits (931), Expect = 3e-98, Method: Composition-based stats.
Identities = 155/391 (39%), Positives = 222/391 (56%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RL++++DGE+++ P IG LHRGTEK+ E+ + Q +PY
Sbjct: 3 RTEEMLLNVGPQHPSTHGVFRLVIKIDGEVIKEATPVIGYLHRGTEKIAESLQYTQIIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY++ M + AVE ++G+EIP R + +RVL E+GRI SHL+ T +D+G
Sbjct: 63 TDRMDYLSAMTNNYVICHAVETMMGLEIPERAEYLRVLAMELGRIASHLVWWGTNLLDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++P L+ F ERE ++ G+R+ Y R GGV D P +E + + L
Sbjct: 123 AVSPFLYAFREREMIINLLNELCGARLTFNYMRVGGVKWDAPDGWIEKVEEFVPYMREQL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
DL++GN IF R +G E+A + SG +R +G WDLRK +PY Y D
Sbjct: 183 AGYHDLVSGNEIFLNRVKGVGIYSAEEAISYSLSGANLRCTGVNWDLRKDEPYSIYDRFD 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDIP+G GD +DRY+ RM E+ ES+KI+ Q V + K G V A PKI+
Sbjct: 243 FDIPVGSVGDAWDRYVCRMKEIEESLKIVEQAVQQFP---KEGAVLAKVPKII------- 292
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE + +E+P+GE G Y+ SDG +PYR K R P + +
Sbjct: 293 ------------------KAPKGEAFVRIESPRGEIGCYIASDGKKEPYRLKFRRPSFYN 334
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L KG +A++ ILG +DIV GEVD
Sbjct: 335 LQILPKLLKGENIANLITILGGVDIVLGEVD 365
>gi|196039454|ref|ZP_03106759.1| NADH dehydrogenase (ubiquinone), D subunit [Bacillus cereus
NVH0597-99]
gi|206976939|ref|ZP_03237841.1| NADH dehydrogenase (ubiquinone), D subunit [Bacillus cereus
H3081.97]
gi|217962786|ref|YP_002341362.1| NADH dehydrogenase subunit D [Bacillus cereus AH187]
gi|228949017|ref|ZP_04111290.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
gi|229142036|ref|ZP_04270561.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus BDRD-ST26]
gi|196029614|gb|EDX68216.1| NADH dehydrogenase (ubiquinone), D subunit [Bacillus cereus
NVH0597-99]
gi|206744905|gb|EDZ56310.1| NADH dehydrogenase (ubiquinone), D subunit [Bacillus cereus
H3081.97]
gi|217068148|gb|ACJ82398.1| NADH dehydrogenase (ubiquinone), D subunit [Bacillus cereus AH187]
gi|228641325|gb|EEK97631.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus BDRD-ST26]
gi|228810773|gb|EEM57121.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
Length = 366
Score = 363 bits (931), Expect = 3e-98, Method: Composition-based stats.
Identities = 157/391 (40%), Positives = 222/391 (56%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RL++++DGEI++ P IG LHRGTEK+ E+ + Q +PY
Sbjct: 3 RTEEMLLNVGPQHPSTHGVFRLVIKIDGEIIKEATPVIGYLHRGTEKIAESLQYTQIIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY++ M + AVE ++G+EIP R + +RVL E+GRI SHL+ T +D+G
Sbjct: 63 TDRMDYLSAMTNNYVICHAVETMMGLEIPERAEYLRVLAMELGRIASHLVWWGTNLLDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++P L+ F ERE ++ G+R+ Y R GGV D P +E + + L
Sbjct: 123 AVSPFLYAFREREMIINLLNELCGARLTFNYMRVGGVKWDAPDGWIEKVEEFVPYMREQL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
DL++GN IF R +G EDA + SG +R +G WDLRK +PY Y D
Sbjct: 183 AGYHDLVSGNEIFLNRVKGVGIYSEEDAISYSLSGANLRCTGVNWDLRKDEPYSIYDRFD 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDIP+G GD +DRY+ RM E+ ES+KI+ Q V + K G V A PKI+
Sbjct: 243 FDIPVGSVGDAWDRYVCRMQEIEESLKIVEQAVQQFP---KEGAVLAKVPKII------- 292
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE + +E+P+GE G Y+ SDG +PYR K R P + +
Sbjct: 293 ------------------KAPKGEAFVRIESPRGEIGCYIASDGKKEPYRLKFRRPSFYN 334
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L KG +A++ ILG +DIV GEVD
Sbjct: 335 LQILPKLLKGENIANLITILGGVDIVLGEVD 365
>gi|157736574|ref|YP_001489257.1| NADH-quinone oxidoreductase, C/D subunit [Arcobacter butzleri
RM4018]
gi|218528034|sp|A8ERL4|NUOCD_ARCB4 RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|157698428|gb|ABV66588.1| NADH-quinone oxidoreductase, C/D subunit [Arcobacter butzleri
RM4018]
Length = 544
Score = 363 bits (931), Expect = 3e-98, Method: Composition-based stats.
Identities = 145/394 (36%), Positives = 217/394 (55%), Gaps = 4/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++ +N GP HPA+HG +R + ++GE + IG LHRG EK E T+ Q +
Sbjct: 155 EEIDDLMLLNVGPSHPASHGTIRNFVAMEGETITACVTEIGYLHRGFEKACEHHTYSQII 214
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DRL+Y + + Y+ AVE++LGIEI R ++IRV+ E+ RIL HL+ +D
Sbjct: 215 PYTDRLNYCSAILNNIGYSKAVEEMLGIEITPRAKMIRVIIGELSRILDHLVCNAANMVD 274
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+G LT + F R+ + +G+R+ Y R GG+ D+ +D+ +
Sbjct: 275 LGGLTNFWYLFSPRDMAYDLLSKLTGARLTNTYTRIGGLEFDLYDGFDKDLEEVLKAVEK 334
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ D L+ NRI+ R ++G +K + A G SG +R +G A DLRK +PY Y
Sbjct: 335 GVEDALSLIAHNRIYHDRTQDVGVIKADFALRNGISGPNLRAAGVACDLRKDKPYYGYEN 394
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DFD+ IG HGD YDR + R EMR+S KIIRQ + L G ++ P ++ P +
Sbjct: 395 FDFDVVIGSHGDVYDRMMCRFEEMRQSTKIIRQAMKNLPD----GAINVYAPGVILPSKK 450
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
D+ ++E L++ FKL EG VP GE Y+ EA GE G +++SDG +PY+ K R P +
Sbjct: 451 DVYGNIEGLMNQFKLTFEGIQVPKGEYYSFSEAANGELGFFIVSDGSGRPYKVKCRPPCF 510
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
L A + +G LAD + S++ + GE DR
Sbjct: 511 YSLAAYSKIVEGTMLADAVVTMASMNFIAGEFDR 544
>gi|262369335|ref|ZP_06062663.1| NADH-quinone oxidoreductase subunit C/D [Acinetobacter johnsonii
SH046]
gi|262315403|gb|EEY96442.1| NADH-quinone oxidoreductase subunit C/D [Acinetobacter johnsonii
SH046]
Length = 595
Score = 363 bits (931), Expect = 3e-98, Method: Composition-based stats.
Identities = 147/392 (37%), Positives = 210/392 (53%), Gaps = 4/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+N GP HP+AHG R+IL+LDGE V+ P IG HRG EK+ E +T+ +PY
Sbjct: 208 DEDFMFLNLGPNHPSAHGAFRVILQLDGEEVKDCVPDIGYHHRGVEKMAERQTWHSFIPY 267
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY+ Q Y + VE++ GI +P R Q IRV+ SE+ RI +HLL + T D G
Sbjct: 268 TDRVDYLGGCAQNMPYVMGVEQMAGITVPDRAQCIRVMMSELFRINNHLLYIGTAIQDAG 327
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
+TP + F +R+K+ E +G RMH A+FR GG D+P I D P +
Sbjct: 328 GMTPVFYMFADRQKIYDAIEAITGYRMHPAWFRIGGTAHDLPNNWQHLIREILDWMPKRM 387
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
N+ N +F R N+ + A WG +G +R +G +D+RK +PY Y D
Sbjct: 388 NEYYTAALKNSVFVGRTRNVAQYDAKSALAWGVTGTGLRATGIDFDVRKYRPYSGYENYD 447
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FD+P+ GD Y R LV E+ ES+KI++QC++ + G A P VPP +
Sbjct: 448 FDVPLEYEGDAYARVLVHFREIEESLKIVKQCLDNM----PSGAYKADHPLAVPPPKDKT 503
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
+ +E+LI HF + G +P GE E KG YL SD YR +IR P + H
Sbjct: 504 LQDIETLITHFLSVSWGPVMPAGEASVMAEVVKGASNYYLTSDKSTMSYRTRIRTPTFTH 563
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
LQ M + G ++D+ L ++D+V +VDR
Sbjct: 564 LQQMPSVINGSLMSDLIIYLATIDVVMADVDR 595
>gi|229032928|ref|ZP_04188883.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus AH1271]
gi|228728473|gb|EEL79494.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus AH1271]
Length = 366
Score = 363 bits (931), Expect = 4e-98, Method: Composition-based stats.
Identities = 156/391 (39%), Positives = 222/391 (56%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RL++++DGEI++ P IG LHRGTEK+ E+ + Q +PY
Sbjct: 3 RTEEMLLNVGPQHPSTHGVFRLVIKIDGEIIKEATPVIGYLHRGTEKIAESLQYTQIIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY++ M + AVE ++G+EIP R + +RVL E+GRI SHL+ T +D+G
Sbjct: 63 TDRMDYLSAMTNNYVICHAVETMMGLEIPERAEYLRVLAMELGRIASHLVWWGTNLLDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++P L+ F ERE ++ G+R+ Y R GGV D P +E + + L
Sbjct: 123 AVSPFLYAFREREMIINLLNELCGARLTFNYMRVGGVKWDAPDGWIEKVEEFVPYMREQL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
DL++GN IF R +G E+A + SG +R +G WDLRK +PY Y D
Sbjct: 183 AGYHDLVSGNEIFLNRVKGVGIYSAEEAISYSLSGANLRCTGVNWDLRKDEPYSIYDRFD 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDIP+G GD +DRY+ RM E+ ES+KI+ Q V + K G V A PKI+
Sbjct: 243 FDIPVGSMGDAWDRYVCRMQEIEESLKIVEQAVQQFP---KDGAVLAKVPKII------- 292
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE + +E+P+GE G Y+ SDG +PYR K R P + +
Sbjct: 293 ------------------KAPKGEAFVRIESPRGEIGCYIASDGKKEPYRLKFRRPSFYN 334
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L KG +A++ ILG +DIV GEVD
Sbjct: 335 LQILPKLLKGENIANLITILGGVDIVLGEVD 365
>gi|254759534|ref|ZP_05211559.1| NADH dehydrogenase subunit D [Bacillus anthracis str. Australia 94]
Length = 366
Score = 363 bits (931), Expect = 4e-98, Method: Composition-based stats.
Identities = 155/391 (39%), Positives = 221/391 (56%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RL++++DGEI++ P IG LHRGTEK+ E+ + Q +PY
Sbjct: 3 RTEEMLLNVGPQHPSTHGVFRLVIKIDGEIIKEATPVIGYLHRGTEKIAESLQYTQIIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY++ M + AVE ++G+EIP R + +RVL E+GRI SHL+ T +D+G
Sbjct: 63 TDRMDYLSAMTNNYVICHAVETMMGLEIPERAEYLRVLAMELGRIASHLVWWGTNLLDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++P L+ F ERE ++ G+R+ Y R GGV D P +E + + L
Sbjct: 123 AVSPFLYAFREREMIINLLNELCGARLTFNYMRVGGVKWDAPDGWIEKVKEFVPYMREQL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
DL++GN IF R +G E+A + SG +R +G WDLRK +PY Y D
Sbjct: 183 AGYHDLVSGNEIFLNRVKGVGIYSAEEAISYSLSGANLRCTGVNWDLRKDEPYSIYDRFD 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDIP+G GD +DRY+ RM E+ ES+KI+ Q V + K G V A PK +
Sbjct: 243 FDIPVGSVGDAWDRYVCRMQEIEESLKIVEQAVQQFP---KEGAVLAKVPKFI------- 292
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE + +E+P+GE G Y+ SDG +PYR K R P + +
Sbjct: 293 ------------------KAPKGEAFVRIESPRGEIGCYIASDGKKEPYRLKFRRPSFYN 334
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L KG +A++ ILG +DIV GEVD
Sbjct: 335 LQILPKLLKGENIANLITILGGVDIVLGEVD 365
>gi|8928603|ref|NP_059408.1| NADH dehydrogenase subunit 7 [Paramecium aurelia]
Length = 422
Score = 363 bits (931), Expect = 4e-98, Method: Composition-based stats.
Identities = 194/402 (48%), Positives = 273/402 (67%), Gaps = 9/402 (2%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K ++ +NFGPQHPAAHGVLRLIL+L+GE+VE++D HIGLLHRG+EKL+ETK +LQ++P
Sbjct: 21 KNIKAICVNFGPQHPAAHGVLRLILQLNGEVVEKMDIHIGLLHRGSEKLMETKPYLQSMP 80
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIE-IPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
YFDRLDYV+ M QEHAY LA+E LL L+R ++ E+ RIL+H+L + A+D
Sbjct: 81 YFDRLDYVSMMVQEHAYCLAIEALLNTTNYTANFVLVRTMFDELTRILNHMLAIACHALD 140
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP-ELVEDIGCWCDSFP 181
+G+++ W FEEREK+M FYER G RMHAA++RP V+ + +L+ DI + ++
Sbjct: 141 IGSMSSIFWAFEEREKIMEFYERVCGRRMHAAFYRPNEVNLNFLSVKLLTDILEFNNNCL 200
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRK--SQPYEC 239
+ L+++ ++LT N+I+KQR VNIG++ +D +G +GVM R +G DLR Y
Sbjct: 201 TTLSEMHNILTYNKIWKQRLVNIGSISYKDCLDFGLTGVMARSTGIKRDLRMDAFDTYAN 260
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSA-----SDP 294
Y L+F G+ GD YDR+L+RM EM ES+ II Q + +L ++ +
Sbjct: 261 YYYLNFRSYTGQAGDSYDRFLIRMNEMSESINIISQAIFKLTTSKNTCSPASILKALNKK 320
Query: 295 KIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYR 354
K + + SME LI HFK ++EG+ + Y AVE+PKGEFGV L+SDG NKPYR
Sbjct: 321 KFISQTYKNEYSSMEKLITHFKYWSEGFKIQSNWTYQAVESPKGEFGVTLVSDGSNKPYR 380
Query: 355 CKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
CK+R+P Y HLQ + + KGH LAD+SA++G++DIVFGE+DR
Sbjct: 381 CKVRSPAYHHLQVLPKMSKGHLLADLSALIGTIDIVFGEIDR 422
>gi|47569792|ref|ZP_00240463.1| NADH dehydrogenase I, D subunit [Bacillus cereus G9241]
gi|228988521|ref|ZP_04148610.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
gi|229124800|ref|ZP_04253979.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus 95/8201]
gi|229158857|ref|ZP_04286915.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus ATCC 4342]
gi|229187522|ref|ZP_04314663.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus BGSC 6E1]
gi|47553534|gb|EAL11914.1| NADH dehydrogenase I, D subunit [Bacillus cereus G9241]
gi|228595961|gb|EEK53640.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus BGSC 6E1]
gi|228624841|gb|EEK81610.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus ATCC 4342]
gi|228658675|gb|EEL14336.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus 95/8201]
gi|228771237|gb|EEM19714.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
Length = 366
Score = 363 bits (931), Expect = 4e-98, Method: Composition-based stats.
Identities = 156/391 (39%), Positives = 222/391 (56%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RL++++DGEI++ P IG LHRGTEK+ E+ + Q +PY
Sbjct: 3 RTEEMLLNVGPQHPSTHGVFRLVIKIDGEIIKEATPVIGYLHRGTEKIAESLQYTQIIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY++ M + AVE ++G+EIP R + +RVL E+GRI SHL+ T +D+G
Sbjct: 63 TDRMDYLSAMTNNYVICHAVETMMGLEIPERAEYLRVLAMELGRIASHLVWWGTNLLDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++P L+ F ERE ++ G+R+ Y R GGV D P +E + + L
Sbjct: 123 AVSPFLYAFREREMIINLLNELCGARLTFNYMRVGGVKWDAPDGWIEKVEEFVPYMREQL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
DL++GN IF R +G E+A + SG +R +G WDLRK +PY Y D
Sbjct: 183 AGYHDLVSGNEIFLNRVKGVGIYSAEEAISYSLSGANLRCTGVNWDLRKDEPYSIYDRFD 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDIP+G GD +DRY+ RM E+ ES+KI+ Q V + K G V A PKI+
Sbjct: 243 FDIPVGSVGDAWDRYVCRMQEIEESLKIVEQAVQQFP---KEGAVLAKVPKII------- 292
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE + +E+P+GE G Y+ SDG +PYR K R P + +
Sbjct: 293 ------------------KAPKGEAFVRIESPRGEIGCYIASDGKKEPYRLKFRRPSFYN 334
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L KG +A++ ILG +DIV GEVD
Sbjct: 335 LQILPKLLKGENIANLITILGGVDIVLGEVD 365
>gi|42784467|ref|NP_981714.1| NADH dehydrogenase subunit D [Bacillus cereus ATCC 10987]
gi|81408416|sp|Q72XF6|NUOD_BACC1 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|42740399|gb|AAS44322.1| NADH dehydrogenase I, D subunit [Bacillus cereus ATCC 10987]
Length = 366
Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats.
Identities = 157/391 (40%), Positives = 222/391 (56%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RL++++DGEI++ P IG LHRGTEK+ E+ + Q +PY
Sbjct: 3 RTEEMLLNVGPQHPSTHGVFRLVIKIDGEIIKEATPVIGYLHRGTEKIAESLQYTQIIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY++ M + AVE ++G+EIP R + +RVL E+GRI SHL+ T +D+G
Sbjct: 63 TDRMDYLSAMTNNYVICHAVETMMGLEIPERAEYLRVLAMELGRIASHLVWWGTNLLDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++P L+ F ERE ++ G+R+ Y R GGV D P +E + + L
Sbjct: 123 AVSPFLYAFREREMIINLLNELCGARLTFNYMRVGGVKWDAPDGWIEKVEEFVPYMREQL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
DL++GN IF R +G EDA + SG +R +G WDLRK +PY Y D
Sbjct: 183 AGYHDLVSGNEIFLNRVKGVGIYSEEDAISYSLSGANLRCTGVNWDLRKDEPYSIYDRFD 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDIP+G GD +DRY+ RM E+ ES+KI+ Q V + K G V A PKI+
Sbjct: 243 FDIPVGSVGDAWDRYVCRMKEIEESLKIVEQAVQQFP---KEGAVLAKVPKII------- 292
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE + +E+P+GE G Y+ SDG +PYR K R P + +
Sbjct: 293 ------------------KAPKGEAFVRIESPRGEIGCYIASDGKKEPYRLKFRRPSFYN 334
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L KG +A++ ILG +DIV GEVD
Sbjct: 335 LQILPKLLKGENIANLITILGGVDIVLGEVD 365
>gi|83589829|ref|YP_429838.1| NADH dehydrogenase subunit D [Moorella thermoacetica ATCC 39073]
gi|123524684|sp|Q2RJU4|NUOD_MOOTA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|83572743|gb|ABC19295.1| NADH dehydrogenase subunit D [Moorella thermoacetica ATCC 39073]
Length = 371
Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats.
Identities = 157/395 (39%), Positives = 229/395 (57%), Gaps = 29/395 (7%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ ++ +N GPQHP+ HGV R +L LDGE V V+ IG LHRG EKL E +T+ Q
Sbjct: 6 ENLRTEEIQLNMGPQHPSTHGVYRALLTLDGEKVVGVENIIGYLHRGIEKLAEDRTYTQV 65
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+PY DRLDY+A M Y VEKLLG+E+P R + +RV+ +E+ R+ SH++ V + A+
Sbjct: 66 IPYTDRLDYLAGMLNNLGYVQTVEKLLGLEVPERAEYLRVIMAELSRLASHMVMVASMAL 125
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D+ T F ERE+++ +E GSR+ +Y R GGV DIPP + + + + P
Sbjct: 126 DLSGWTAWFPPFRERERILDLFEMTCGSRLTVSYMRIGGVAADIPPGFLPALESFLNDLP 185
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+ +++ L+TGN IFK R +G + LE A +G +G +R G +DLRK++PY Y
Sbjct: 186 RMIAEMNGLITGNEIFKARCQGVGKIDLETALAYGITGPNLRACGLPFDLRKARPYSIYD 245
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DFDIP +GD YDR+++R++EM +S +IIRQ + +L GPV A P+++
Sbjct: 246 RFDFDIPTLNNGDSYDRFVIRLLEMEQSARIIRQAMEQLPD----GPVQAKVPRVL---- 297
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+P GEVY +E KG G YL+SDGG+KPYR I +P
Sbjct: 298 ---------------------KLPRGEVYHQIEGAKGILGFYLVSDGGSKPYRLHIHSPS 336
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +L A+ + G + D + S+DIV GEVDR
Sbjct: 337 FVNLGALPRISVGGTIQDFVVNIASIDIVLGEVDR 371
>gi|257453969|ref|ZP_05619245.1| NADH-quinone oxidoreductase subunit c/d [Enhydrobacter aerosaccus
SK60]
gi|257448634|gb|EEV23601.1| NADH-quinone oxidoreductase subunit c/d [Enhydrobacter aerosaccus
SK60]
Length = 594
Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats.
Identities = 148/393 (37%), Positives = 220/393 (55%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+AHG R++L+LDGE V P IG HRG EK+ E +T+ +P
Sbjct: 206 RDEDFMFLNLGPNHPSAHGAFRVVLQLDGEEVIDCIPDIGYHHRGAEKIAERQTWHSFIP 265
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ + E Y ++VEKL GI +P R IR++ SE RI ++LL T D
Sbjct: 266 YTDRIDYLGGVMNELPYIMSVEKLAGITVPDRANTIRIMMSEFFRITNNLLYWGTFIQDA 325
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP + F +R+K E +G RMH A+FR GG D+P + + + D P
Sbjct: 326 GGMTPVFYMFADRQKAYDVIEAVTGYRMHPAWFRIGGTAMDLPNGWHKLVREFLDWMPKR 385
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ N++ + R N+ + A WG SG +R +G +D+RK++PY Y
Sbjct: 386 IDEYVKATMKNKVLQLRTQNVAQYDAKSALAWGVSGHGLRATGIPYDVRKARPYLGYENF 445
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DF++PI +GD YDR LV++ E+R+S++II QC+N + +G A P VPP +
Sbjct: 446 DFEVPIEFNGDAYDRCLVKIEEIRQSLRIIEQCLNNM----PMGAYKADHPLAVPPPKDR 501
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+E+LI+HF + G +P GE VEA KG Y+ SD YR +IR P +A
Sbjct: 502 TLNDIETLINHFISVSWGPVMPEGESSFMVEAVKGITNYYITSDRSTMSYRTRIRTPTFA 561
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ M + G ++D+ L S+D+V +VDR
Sbjct: 562 HLQQMPSVINGSLVSDLIIYLASIDVVMADVDR 594
>gi|228942443|ref|ZP_04104981.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis serovar berliner ATCC 10792]
gi|228817284|gb|EEM63371.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis serovar berliner ATCC 10792]
gi|326943095|gb|AEA18991.1| NADH dehydrogenase subunit D [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 366
Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats.
Identities = 156/391 (39%), Positives = 222/391 (56%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RL++++DGEI++ P IG LHRGTEK+ E+ + Q +PY
Sbjct: 3 RTEEMLLNVGPQHPSTHGVFRLVIKIDGEIIKEATPVIGYLHRGTEKIAESLQYTQIIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY++ M + AVE ++G+EIP R + +RVL E+GRI SHL+ T +D+G
Sbjct: 63 TDRMDYLSAMTNNYVICHAVETMVGLEIPERAEYLRVLAMELGRIASHLVWWGTNLLDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++P L+ F ERE ++ G+R+ Y R GGV D P +E + + L
Sbjct: 123 AVSPFLYAFREREMIINLLNELCGARLTFNYMRVGGVKWDAPDGWIEKVEEFVPYMREQL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
DL++GN IF R +G E+A + SG +R +G WDLRK +PY Y D
Sbjct: 183 AGYHDLVSGNEIFLNRVKGVGIYSAEEAISYSLSGANLRCTGVNWDLRKDEPYSIYDRFD 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDIP+G GD +DRY+ RM E+ ES+KI+ Q V + K G V A PKI+
Sbjct: 243 FDIPVGSVGDAWDRYVCRMQEIEESLKIVEQAVQQFP---KDGAVLAKVPKII------- 292
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE + +E+P+GE G Y+ SDG +PYR K R P + +
Sbjct: 293 ------------------KAPKGEAFVRIESPRGEIGCYIASDGKKEPYRLKFRRPSFYN 334
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L KG +A++ ILG +DIV GEVD
Sbjct: 335 LQILPKLLKGENIANLITILGGVDIVLGEVD 365
>gi|39937322|ref|NP_949598.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Rhodopseudomonas palustris CGA009]
gi|81619356|sp|Q6N1Z0|NUOCD_RHOPA RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|39651180|emb|CAE29703.1| NADH-ubiquinone dehydrogenase chain C,D [Rhodopseudomonas palustris
CGA009]
Length = 581
Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats.
Identities = 159/390 (40%), Positives = 226/390 (57%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N+GP A HGV R++L LDGE + P IG HRG EK+ E +T+ +PY D
Sbjct: 196 ELMILNYGPHSMATHGVFRIVLALDGEEIVAARPDIGFHHRGAEKMAERQTWHNFLPYTD 255
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+DY+ + E Y AVEK GI++P R +R++ SE+ RI++HLL T A D GA+
Sbjct: 256 RVDYLGGVMGEMPYLQAVEKACGIKVPDRALTVRIMLSEMFRIMNHLLFYGTMAQDTGAM 315
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
+P + F +RE+ E +G+RMH +FR GG+ D+P + + D PS L+D
Sbjct: 316 SPVFYMFTDRERGYRVIESITGARMHPGFFRIGGLSMDLPDGWDRLVREFLDWMPSRLDD 375
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
++ N IF+ R I A WG +G +R +G AWD+RK++PY + DF+
Sbjct: 376 YEGMVLRNEIFRARTKGIAAYDTAMALDWGVTGPGLRATGYAWDVRKARPYAGFENFDFE 435
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
IP+G GDCYDR +VR+ E+R+S+KIIRQCV+ + GP+ A P PP R M
Sbjct: 436 IPVGHAGDCYDRTVVRVEEIRQSLKIIRQCVDNM----PSGPIKADHPLTTPPPRERMLH 491
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+E++IHHF + G +P GE VE +G LISDG YR +IR P +AHLQ
Sbjct: 492 DIETMIHHFVSTSWGPVLPPGEYTGQVETVRGLTQFALISDGEPSSYRTRIRTPSFAHLQ 551
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + G +AD+ A LGS+D V +VDR
Sbjct: 552 MISAVAPGMMVADLVAYLGSIDYVMSDVDR 581
>gi|30023330|ref|NP_834961.1| NADH dehydrogenase subunit D [Bacillus cereus ATCC 14579]
gi|206970049|ref|ZP_03231002.1| NADH dehydrogenase (quinone), d subunit [Bacillus cereus AH1134]
gi|218233636|ref|YP_002370072.1| NADH dehydrogenase subunit D [Bacillus cereus B4264]
gi|228924032|ref|ZP_04087308.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
gi|228955543|ref|ZP_04117547.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis serovar kurstaki str. T03a001]
gi|229020515|ref|ZP_04177262.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus AH1273]
gi|229072764|ref|ZP_04205964.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus F65185]
gi|229082512|ref|ZP_04214975.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus Rock4-2]
gi|229112709|ref|ZP_04242245.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus Rock1-15]
gi|229130548|ref|ZP_04259504.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus BDRD-Cer4]
gi|229147837|ref|ZP_04276179.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus BDRD-ST24]
gi|229175970|ref|ZP_04303467.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus MM3]
gi|229181545|ref|ZP_04308871.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus 172560W]
gi|296505724|ref|YP_003667424.1| NADH dehydrogenase subunit D [Bacillus thuringiensis BMB171]
gi|81433048|sp|Q814W9|NUOD_BACCR RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|29898891|gb|AAP12162.1| NADH-quinone oxidoreductase chain D [Bacillus cereus ATCC 14579]
gi|206734626|gb|EDZ51795.1| NADH dehydrogenase (quinone), d subunit [Bacillus cereus AH1134]
gi|218161593|gb|ACK61585.1| NADH dehydrogenase (quinone), D subunit [Bacillus cereus B4264]
gi|228601913|gb|EEK59408.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus 172560W]
gi|228607564|gb|EEK64889.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus MM3]
gi|228635665|gb|EEK92153.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus BDRD-ST24]
gi|228652887|gb|EEL08769.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus BDRD-Cer4]
gi|228670841|gb|EEL26149.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus Rock1-15]
gi|228700944|gb|EEL53467.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus Rock4-2]
gi|228710390|gb|EEL62364.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus F65185]
gi|228740786|gb|EEL91037.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus AH1273]
gi|228804165|gb|EEM50780.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis serovar kurstaki str. T03a001]
gi|228835522|gb|EEM80887.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
gi|296326776|gb|ADH09704.1| NADH dehydrogenase subunit D [Bacillus thuringiensis BMB171]
Length = 366
Score = 362 bits (930), Expect = 5e-98, Method: Composition-based stats.
Identities = 156/391 (39%), Positives = 222/391 (56%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RL++++DGEI++ P IG LHRGTEK+ E+ + Q +PY
Sbjct: 3 RTEEMLLNVGPQHPSTHGVFRLVIKIDGEIIKEATPVIGYLHRGTEKIAESLQYTQIIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY++ M + AVE ++G+EIP R + +RVL E+GRI SHL+ T +D+G
Sbjct: 63 TDRMDYLSAMTNNYVICHAVETMMGLEIPERAEYLRVLAMELGRIASHLVWWGTNLLDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++P L+ F ERE ++ G+R+ Y R GGV D P +E + + L
Sbjct: 123 AVSPFLYAFREREMIINLLNELCGARLTFNYMRVGGVKWDAPDGWIEKVEEFVPYMREQL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
DL++GN IF R +G E+A + SG +R +G WDLRK +PY Y D
Sbjct: 183 AGYHDLVSGNEIFLNRVKGVGIYSAEEAISYSLSGANLRCTGVNWDLRKDEPYSIYDRFD 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDIP+G GD +DRY+ RM E+ ES+KI+ Q V + K G V A PKI+
Sbjct: 243 FDIPVGSVGDAWDRYVCRMQEIEESLKIVEQAVQQFP---KDGAVLAKVPKII------- 292
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE + +E+P+GE G Y+ SDG +PYR K R P + +
Sbjct: 293 ------------------KAPKGEAFVRIESPRGEIGCYIASDGKKEPYRLKFRRPSFYN 334
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L KG +A++ ILG +DIV GEVD
Sbjct: 335 LQILPKLLKGENIANLITILGGVDIVLGEVD 365
>gi|254421545|ref|ZP_05035263.1| Respiratory-chain NADH dehydrogenase, 49 Kd subunit subfamily
[Synechococcus sp. PCC 7335]
gi|196189034|gb|EDX83998.1| Respiratory-chain NADH dehydrogenase, 49 Kd subunit subfamily
[Synechococcus sp. PCC 7335]
Length = 380
Score = 362 bits (930), Expect = 5e-98, Method: Composition-based stats.
Identities = 174/387 (44%), Positives = 224/387 (57%), Gaps = 10/387 (2%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
GP HP+ HGVLRLI+ LDGE V V+P IG LHRG EK+ E +T + VPY R DY A
Sbjct: 1 MGPHHPSMHGVLRLIVTLDGENVIDVEPVIGYLHRGMEKIAENRTNVMFVPYVSRWDYAA 60
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWG 132
M E A EKL IE+P R IR++ E+ RI +HLL + D GA TP +
Sbjct: 61 GMFNEAITVNAPEKLADIEVPKRASYIRMIMLELNRIANHLLWLGPFMADCGATTPFFYI 120
Query: 133 FEEREKLMVFYERASGSR-MHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLL 191
F ERE + +E ASG+R ++ YFR GGV D+P E +CD F +++ L+
Sbjct: 121 FRERELIYDLWEAASGARLINNNYFRIGGVAADLPYGWTEKCEDFCDYFDPKVDEYEKLI 180
Query: 192 TGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGK 251
T N IF++R +GT+ EDA WG SG M+R SG WDLRK YECY ELD+D+
Sbjct: 181 TDNPIFRRRVEGVGTMSREDAINWGCSGPMLRASGVKWDLRKVDHYECYDELDWDVQWAT 240
Query: 252 HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESL 311
GDC+ RY+VR+ EMRESVKIIRQ + L G GP + K + K
Sbjct: 241 EGDCFARYIVRINEMRESVKIIRQAIKGLPG----GPFENLEAKRMA---GGPKSEWNDF 293
Query: 312 IHHF--KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
+ F K + +P GE Y VE KGE GVY+I + P+R KIRA + +LQ +
Sbjct: 294 DYQFAGKKIAPTFKIPEGEHYVRVETGKGEVGVYIIGENNVFPWRWKIRAADFNNLQILP 353
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVDR 396
L KG +LAD+ ILGS+DI+ G VDR
Sbjct: 354 NLLKGVKLADIMPILGSIDIIMGSVDR 380
>gi|228917906|ref|ZP_04081442.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
gi|228841703|gb|EEM86814.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
Length = 366
Score = 362 bits (930), Expect = 5e-98, Method: Composition-based stats.
Identities = 155/391 (39%), Positives = 221/391 (56%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RL++++DGEI++ P IG LHRGTEK+ E+ + Q +PY
Sbjct: 3 RTEEMLLNVGPQHPSTHGVFRLVIKIDGEIIKEATPVIGYLHRGTEKIAESLQYTQIIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY++ M + AVE ++G+EIP R + +RVL E+GRI SHL+ T +D+G
Sbjct: 63 TDRMDYLSAMTNNYVICHAVETMMGLEIPERAEYLRVLAMELGRIASHLVWWGTNLLDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++P L+ F ERE ++ G+R+ Y R GGV D P +E + + L
Sbjct: 123 AVSPFLYAFREREMIINLLNELCGARLTFNYMRVGGVKWDAPDGWIEKVKEFVPYMREQL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
DL++GN IF R +G E+A + SG +R +G WDLRK +PY Y D
Sbjct: 183 AGYHDLVSGNEIFLNRVKGVGIYSAEEAISYSLSGANLRCTGVNWDLRKDEPYSIYDRFD 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F IP+G GD +DRY+ RM E+ ES+KI+ Q V + K G V A PKI+
Sbjct: 243 FHIPVGSVGDAWDRYVCRMQEIEESLKIVEQAVQQFP---KEGAVLAKVPKII------- 292
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE + +E+P+GE G Y+ SDG +PYR K R P + +
Sbjct: 293 ------------------KAPKGEAFVRIESPRGEIGCYIASDGKKEPYRLKFRRPSFYN 334
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L KG +A++ ILG +DIV GEVD
Sbjct: 335 LQILPKLLKGENIANLITILGGVDIVLGEVD 365
>gi|163942985|ref|YP_001647869.1| NADH dehydrogenase subunit D [Bacillus weihenstephanensis KBAB4]
gi|218534389|sp|A9VS95|NUOD_BACWK RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|163865182|gb|ABY46241.1| NADH dehydrogenase I, D subunit [Bacillus weihenstephanensis KBAB4]
Length = 366
Score = 362 bits (930), Expect = 5e-98, Method: Composition-based stats.
Identities = 154/391 (39%), Positives = 221/391 (56%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RL++++DGEI++ P IG LHRGTEK+ E+ + Q +PY
Sbjct: 3 RTEEMLLNVGPQHPSTHGVFRLVIKIDGEIIKEATPVIGYLHRGTEKIAESLQYTQIIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY++ M + AVE ++ +EIP R + +RVL E+GR+ SHL+ T +D+G
Sbjct: 63 TDRMDYLSAMTNNYVLCHAVETMMDLEIPERAEYLRVLAMELGRVASHLVWWGTNLLDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++P L+ F ERE ++ G+R+ Y R GGV D P +E + + L
Sbjct: 123 AVSPFLYAFREREMIINLLSELCGARLTFNYMRVGGVKWDAPDGWIEKVKEFVPYMREQL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
DL++GN IF R +G E+A + SG +R +G WDLRK +PY Y D
Sbjct: 183 EGYHDLVSGNEIFLNRVKGVGVYSAEEAISYSLSGANLRCTGVHWDLRKDEPYSIYDRFD 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FD+P+G GD +DRY+ RM E+ ES+KII Q V + K G V A PKI+
Sbjct: 243 FDVPVGSTGDAWDRYVCRMKEIEESLKIIEQAVEQFP---KDGAVLAKVPKII------- 292
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE + +E+P+GE G Y+ SDG +PYR K R P + +
Sbjct: 293 ------------------KAPKGEAFVRIESPRGEIGCYIASDGKKEPYRLKFRRPSFYN 334
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L KG +A++ ILG +DIV GEVD
Sbjct: 335 LQILPKLLKGENIANLITILGGVDIVLGEVD 365
>gi|289425616|ref|ZP_06427388.1| NADH dehydrogenase subunit D [Propionibacterium acnes SK187]
gi|289153917|gb|EFD02610.1| NADH dehydrogenase subunit D [Propionibacterium acnes SK187]
Length = 433
Score = 362 bits (930), Expect = 5e-98, Method: Composition-based stats.
Identities = 167/412 (40%), Positives = 234/412 (56%), Gaps = 19/412 (4%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++ + +NFGP HP+ HGV+RLI+ELDGE + IG LH G EK +E +T+ Q V
Sbjct: 23 ERGDETVVVNFGPSHPSTHGVMRLIIELDGESASDLRVGIGFLHTGIEKNMEFRTWTQGV 82
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R +YVA E Y LAVEKLLGI ++P R +++RV+ +E+ RI SHL+ V T
Sbjct: 83 TFMTRCNYVANFFNELVYCLAVEKLLGITDDVPERARVLRVMITELNRISSHLIAVGTGG 142
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+++GA + G ERE ++ F + +G RM+ A+ RPGGV D+P ++ +
Sbjct: 143 LELGASSVAEVGLREREIILEFNQAVTGLRMNNAWIRPGGVATDLPETGLDQLRDLIKRM 202
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L +I N IFK R IG L G +G +R +G WDLRK+QPY Y
Sbjct: 203 EKYLPEIGQFCNENPIFKARTQGIGYADLSTCMALGVTGPALRATGLPWDLRKTQPYCDY 262
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
DFD+ DCY R+ +R+ EM +SV+I++QC+ RL DP I P
Sbjct: 263 DTYDFDVATWDTCDCYGRFRIRLEEMDQSVRILKQCLKRLEDTQGDRH-MVEDPHIAWPA 321
Query: 301 ----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
R M SME+LIHHFK+ TEG+ VP G+VY A+E GE G +L
Sbjct: 322 ELALGPDGQGNSNEHIRHIMGESMEALIHHFKIVTEGFRVPAGQVYQAIEGAGGELGCHL 381
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDGG +PYR +R PG+ ++Q++ +C+G L+DV L SLD V G VDR
Sbjct: 382 VSDGGVRPYRSHLRDPGFVNVQSLPAMCEGGMLSDVVPSLASLDPVMGGVDR 433
>gi|228911137|ref|ZP_04074943.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis IBL 200]
gi|228848500|gb|EEM93348.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis IBL 200]
Length = 366
Score = 362 bits (930), Expect = 5e-98, Method: Composition-based stats.
Identities = 156/391 (39%), Positives = 222/391 (56%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RL++++DGEI++ P IG LHRGTEK+ E+ + Q +PY
Sbjct: 3 RTEEMLLNVGPQHPSTHGVFRLVIKIDGEIIKEATPVIGYLHRGTEKIAESLQYTQIIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY++ M + AVE ++G+EIP R + +RVL E+GRI SHL+ T +D+G
Sbjct: 63 TDRMDYLSAMTNNYVICHAVETMMGLEIPERAEYLRVLAMELGRIASHLVWWGTNLLDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++P L+ F ERE ++ G+R+ Y R GGV D P +E + + L
Sbjct: 123 AVSPFLYAFREREMIINLLNELCGARLTFNYMRVGGVKWDAPDGWIEKVEEFVPYMREQL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
DL++GN IF R +G E+A + SG +R +G WDLRK +PY Y D
Sbjct: 183 AGYHDLVSGNEIFLNRVKGVGIYSAEEAVSYSLSGANLRCTGVNWDLRKDEPYSIYDRFD 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDIP+G GD +DRY+ RM E+ ES+KI+ Q V + K G V A PKI+
Sbjct: 243 FDIPVGSVGDAWDRYVCRMQEIEESLKIVEQAVQQFP---KDGAVLAKVPKII------- 292
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE + +E+P+GE G Y+ SDG +PYR K R P + +
Sbjct: 293 ------------------KAPKGEAFVRIESPRGEIGCYIASDGKKEPYRLKFRRPSFYN 334
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L KG +A++ ILG +DIV GEVD
Sbjct: 335 LQILPKLLKGENIANLITILGGVDIVLGEVD 365
>gi|110598464|ref|ZP_01386735.1| NADH dehydrogenase (ubiquinone) [Chlorobium ferrooxidans DSM 13031]
gi|110339914|gb|EAT58418.1| NADH dehydrogenase (ubiquinone) [Chlorobium ferrooxidans DSM 13031]
Length = 400
Score = 362 bits (930), Expect = 5e-98, Method: Composition-based stats.
Identities = 165/397 (41%), Positives = 228/397 (57%), Gaps = 32/397 (8%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ + GPQHP+ HGVL+L DGE++ +P++G LHR EK E + VPY
Sbjct: 30 TDQMVLAMGPQHPSTHGVLKLECLTDGEVITEAEPYLGYLHRCFEKYCENVDYPAIVPYT 89
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DR+DY++ MN E AYA+ VEKLL IEIP R + IRV+ +E+ RI SHL+ + T +D+GA
Sbjct: 90 DRMDYLSGMNSEFAYAITVEKLLDIEIPRRVEFIRVIVAELNRIASHLVAIGTYGIDLGA 149
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
TP L+ F +RE ++ E ASG+RM Y GG+ QDIP + + + + D F
Sbjct: 150 FTPFLFCFRDREHILSLLEWASGARMLYNYIWIGGLSQDIPADFTKRVKEFVDYFRPQAK 209
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
++ LLT N IF +R + IG + + A +G+SG M+RGSG WDLR++ PY Y ELDF
Sbjct: 210 ELYRLLTENEIFIKRTIGIGIMPADVAINYGWSGPMLRGSGVKWDLRRNDPYSVYPELDF 269
Query: 246 DIPIGK-----HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+ + GDC R+LVR +E+ ES+ II QC++++ DPK PK
Sbjct: 270 KVCVPDGRHSEIGDCLSRHLVRALEIDESLNIIEQCISKMPSAEG------FDPKAAIPK 323
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG-GNKPYRCKIRA 359
R GEVY E P+GE G Y+ SDG KP RCK R+
Sbjct: 324 R--------------------IRPKAGEVYGRAENPRGELGFYIQSDGKSTKPLRCKARS 363
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +L AM+ L KG + D+ AI+GS+DIV GEVDR
Sbjct: 364 SCFVNLSAMKDLSKGQLIPDLVAIIGSIDIVLGEVDR 400
>gi|51893912|ref|YP_076603.1| NADH dehydrogenase I subunit D [Symbiobacterium thermophilum IAM
14863]
gi|81610393|sp|Q67KN9|NUOD2_SYMTH RecName: Full=NADH-quinone oxidoreductase subunit D 2; AltName:
Full=NADH dehydrogenase I subunit D 2; AltName:
Full=NDH-1 subunit D 2
gi|51857601|dbj|BAD41759.1| NADH dehydrogenase I subunit D [Symbiobacterium thermophilum IAM
14863]
Length = 384
Score = 362 bits (929), Expect = 5e-98, Method: Composition-based stats.
Identities = 171/410 (41%), Positives = 238/410 (58%), Gaps = 40/410 (9%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M+ ++++ +N GPQHP+ HGVLRL+++LDGE V +P IG LHR EKL E KT+ Q
Sbjct: 1 MNVERTQELLVNMGPQHPSTHGVLRLMIKLDGEQVTWCEPDIGYLHRCFEKLAEQKTYPQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLG--IEIPIRGQLIRVLYSEIGRILSHLLNVTT 118
+P+ DR DY+A M E Y AVEKL G I++P R Q IRV+ +E+ RI SHLL + +
Sbjct: 61 VIPFTDRTDYLAAMLNELCYVEAVEKLFGDAIQVPERAQYIRVMLAELQRITSHLLALGS 120
Query: 119 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELV-------E 171
AMD+GA TP L+ + +REKL +ER +G RM Y R GGV D+P ++ +
Sbjct: 121 MAMDLGATTPFLYCWRDREKLYSLFERITGGRMLYNYLRIGGVRNDLPEGILGTPQDGED 180
Query: 172 DIGCWCDSFPSALNDIS-----DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSG 226
F + + L+TGNRIF+ R NIG + E A + SG ++RGSG
Sbjct: 181 KADKTIWGFINYFDSYVYPEWKALVTGNRIFQYRTKNIGVLTAEQAIAYSCSGAVLRGSG 240
Query: 227 AAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKV 286
WDLRK+ PY Y +FDIP+G++GD +DR+ VR EM +S +I++QC+ L
Sbjct: 241 VKWDLRKNLPYAIYDRFEFDIPVGQNGDSFDRWWVRQEEMYQSSRIVKQCLEWLAENPGP 300
Query: 287 GPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLIS 346
++ PK + P GEVY +E +GE Y++S
Sbjct: 301 ---------VMAPKMPRVL-----------------KPPKGEVYHRIEGARGEVACYVVS 334
Query: 347 DGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
DG PY+ K R+P + HLQ M LC GH++AD+ AILGS+D+V GEVDR
Sbjct: 335 DGSTNPYKVKWRSPAFTHLQLMPLLCPGHKIADIIAILGSIDVVLGEVDR 384
>gi|229193548|ref|ZP_04320493.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus ATCC 10876]
gi|228589937|gb|EEK47811.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus ATCC 10876]
Length = 366
Score = 362 bits (929), Expect = 6e-98, Method: Composition-based stats.
Identities = 155/391 (39%), Positives = 222/391 (56%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RL++++DGE+++ P IG LHRGTEK+ E+ + Q +PY
Sbjct: 3 RTEEMLLNVGPQHPSTHGVFRLVIKIDGELIKEATPVIGYLHRGTEKIAESLQYTQIIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY++ M + AVE ++G+EIP R + +RVL E+GRI SHL+ T +D+G
Sbjct: 63 TDRMDYLSAMTNNYVICHAVETMMGLEIPERAEYLRVLAMELGRIASHLVWWGTNLLDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++P L+ F ERE ++ G+R+ Y R GGV D P +E + + L
Sbjct: 123 AVSPFLYAFREREMIINLLNELCGARLTFNYMRVGGVKWDAPDGWIEKVEEFVPYMREQL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
DL++GN IF R +G E+A + SG +R +G WDLRK +PY Y D
Sbjct: 183 AGYHDLVSGNEIFLNRVKGVGIYSAEEAISYSLSGANLRCTGVNWDLRKDEPYSIYDRFD 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDIP+G GD +DRY+ RM E+ ES+KI+ Q V + K G V A PKI+
Sbjct: 243 FDIPVGSVGDAWDRYVCRMQEIEESLKIVEQAVQQFP---KDGAVLAKVPKII------- 292
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE + +E+P+GE G Y+ SDG +PYR K R P + +
Sbjct: 293 ------------------KAPKGEAFVRIESPRGEIGCYIASDGKKEPYRLKFRRPSFYN 334
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L KG +A++ ILG +DIV GEVD
Sbjct: 335 LQILPKLLKGENIANLITILGGVDIVLGEVD 365
>gi|78186621|ref|YP_374664.1| NADH dehydrogenase (ubiquinone) [Chlorobium luteolum DSM 273]
gi|123730094|sp|Q3B4W0|NUOD_PELLD RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|78166523|gb|ABB23621.1| NADH dehydrogenase subunit D [Chlorobium luteolum DSM 273]
Length = 395
Score = 362 bits (929), Expect = 6e-98, Method: Composition-based stats.
Identities = 172/397 (43%), Positives = 233/397 (58%), Gaps = 32/397 (8%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ ++ GPQHP+ HGVLRL DGE+V +P++G LHR EK E + VPY
Sbjct: 25 TEEMVLSMGPQHPSTHGVLRLECRTDGEVVTEAEPYLGYLHRCFEKYCENVDYPAIVPYT 84
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DR+DY+A MN E AYA+AVEKLL IEIP R + IRV+ SE+ RI SHL+ + T A+D+GA
Sbjct: 85 DRMDYLAGMNSEMAYAIAVEKLLDIEIPRRVEFIRVIVSELNRIASHLVAIGTYAIDLGA 144
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
TP L+ F +RE ++ E ASG+RM Y GG+ D+P + + +G + D F
Sbjct: 145 FTPFLFCFRDREHILNMLEWASGARMLYNYIWIGGLAYDVPADFQKRVGEFVDYFRPKAL 204
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
++S LLT N IF +R IG + + A +G+SG M+RGSG WDLR++ PY Y ELDF
Sbjct: 205 ELSRLLTENEIFVKRTKGIGIMPADVAINYGWSGPMLRGSGVQWDLRRNDPYSIYPELDF 264
Query: 246 DIPIG-----KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+P+ GDC R+LVR +E+ ES+KII QC+ ++ DP+ PK
Sbjct: 265 AVPVPDGKFSDVGDCLSRHLVRALEIEESLKIIEQCIEKMPSAEG------FDPRAAVPK 318
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG-GNKPYRCKIRA 359
R GEVYA E P+GE G Y++SDG P RCK R+
Sbjct: 319 R--------------------IRPKAGEVYARAENPRGELGFYILSDGKSTSPVRCKARS 358
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +L AM+ L KG + D+ AI+GS+DIV GEVDR
Sbjct: 359 SCFVNLSAMKDLSKGQLIPDLVAIIGSIDIVLGEVDR 395
>gi|119356792|ref|YP_911436.1| NADH dehydrogenase (ubiquinone) [Chlorobium phaeobacteroides DSM
266]
gi|218534401|sp|A1BF35|NUOD_CHLPD RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|119354141|gb|ABL65012.1| NADH dehydrogenase subunit D [Chlorobium phaeobacteroides DSM 266]
Length = 400
Score = 362 bits (929), Expect = 6e-98, Method: Composition-based stats.
Identities = 169/397 (42%), Positives = 230/397 (57%), Gaps = 32/397 (8%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ + GPQHP+ HGVL+L DGE+V +P++G LHR EK E + VPY
Sbjct: 30 TEQMVLAMGPQHPSTHGVLKLECFTDGEVVTHAEPYLGYLHRCFEKHCEVVDYPGIVPYT 89
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DR+DY+A MN E AY LAVEKLL +E+P R + IRV+ SE+ RI SHL+ + T A+D+GA
Sbjct: 90 DRMDYLAGMNSEWAYCLAVEKLLDLELPRRVEFIRVIVSELNRIASHLVAIGTYAIDLGA 149
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
TP L+ F +RE ++ E ASG+RM Y GG+ D+P + + + + D F
Sbjct: 150 FTPFLFCFRDREHILSLLEWASGARMLYNYIWIGGLAYDVPADFNKRVKEFVDYFRPKAV 209
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
++ LLT N IF +R IG + + A +G+SG M+RGSG WDLR++ PY Y ELDF
Sbjct: 210 ELYQLLTENEIFVKRTKGIGIMPADVAINYGWSGPMLRGSGVQWDLRRNDPYSVYPELDF 269
Query: 246 DIPIG-----KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+PI GDC R+LVR +EM ES+ II QC++++ G +P+ PK
Sbjct: 270 KVPIPDGKFSDVGDCLSRHLVRALEMDESLSIIEQCIDKMPGSEG------FNPRAAVPK 323
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG-GNKPYRCKIRA 359
R K GEVY E P+GE G Y+ SDG KP RCK R+
Sbjct: 324 RVRAK--------------------AGEVYCRAENPRGELGFYIQSDGKSTKPLRCKARS 363
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +L AM+ L KG + D+ AI+GS+DIV GEVDR
Sbjct: 364 SCFVNLSAMKDLSKGQLIPDLVAIIGSIDIVLGEVDR 400
>gi|146299003|ref|YP_001193594.1| NADH dehydrogenase (quinone) [Flavobacterium johnsoniae UW101]
gi|218534447|sp|A5FKI7|NUOD_FLAJ1 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|146153421|gb|ABQ04275.1| NADH dehydrogenase subunit D [Flavobacterium johnsoniae UW101]
Length = 412
Score = 362 bits (929), Expect = 7e-98, Method: Composition-based stats.
Identities = 153/394 (38%), Positives = 222/394 (56%), Gaps = 3/394 (0%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
++ S +N GP HPA HG+ + IL +DGE + +P IG +HR EK+ E + F Q
Sbjct: 21 NEDGSELSVLNLGPTHPATHGIFQNILLMDGERILEAEPTIGYIHRAFEKIAENRPFYQI 80
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
P DR++Y + + + +EKLLGIE+P R Q +RV+ E+ RI H++ + +
Sbjct: 81 TPLTDRMNYCSSPINNMGWWMTLEKLLGIEVPKRAQYLRVIVMELARITDHIICNSILGV 140
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D GA T L+ F+ REK+ YE G+R+ R GG +D PE + + + FP
Sbjct: 141 DTGAYTGFLYVFQFREKIYEIYEEICGARLTTNMGRIGGFERDWSPEAFRKLDKFLEEFP 200
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
A + +L NRIF R VN+G + E A +GF+G +R +G +D+R + PY Y
Sbjct: 201 PAWKEFENLFERNRIFLDRTVNVGGITAEKAMAYGFTGPNLRAAGVDYDVRVAHPYSSYE 260
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ DF +P+GK GD YDR+ VR E+ ES+ IIRQ + ++ N+ A P P +
Sbjct: 261 DFDFIVPVGKSGDTYDRFCVRNAEVWESLSIIRQALEKMPAGNE---YHAEVPDYYLPPK 317
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
D+ SMESLI+HFK+ VPV E+Y AVE GE G YL +DG PYR R P
Sbjct: 318 EDVYNSMESLIYHFKIVMGEVPVPVSEIYHAVEGGNGELGFYLATDGSRTPYRLHFRRPC 377
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ + QA + KG L+D IL SL+++ GE+D
Sbjct: 378 FIYYQAFPEMIKGALLSDAIIILSSLNVIAGELD 411
>gi|225874132|ref|YP_002755591.1| NADH dehydrogenase I, D subunit [Acidobacterium capsulatum ATCC
51196]
gi|225791802|gb|ACO31892.1| NADH dehydrogenase I, D subunit [Acidobacterium capsulatum ATCC
51196]
Length = 379
Score = 362 bits (929), Expect = 7e-98, Method: Composition-based stats.
Identities = 153/394 (38%), Positives = 208/394 (52%), Gaps = 28/394 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
S ++ GP HP+ HGV R+ + LDGE V R+ P G LHR EK+ E ++L ++P
Sbjct: 13 SDSDILEVSMGPHHPSTHGVFRMDVRLDGERVVRLKPVFGYLHRNHEKIAENASYLASIP 72
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDY+ M Y L VEKL GI +P R + IR++ +E+ R +H V D+
Sbjct: 73 YTDRLDYLCSMTNNWGYVLTVEKLAGITVPERAEYIRIIAAELTRFQNHAGLVGFLMQDM 132
Query: 124 GA-LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
GA TP ++ F EREK++ +E +G+RM Y R GGV D E + + P
Sbjct: 133 GASGTPLMYAFREREKILDLFESLTGARMMCNYLRFGGVRVDCTEEWLNQTRQLVAALPR 192
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+++ LL N I R +G + E A G SG M+R SG +D+RK Y Y
Sbjct: 193 FVDEFERLLRENEILMARTQGVGVLPRELAINAGVSGPMLRASGVNYDVRKVDGYGLYPR 252
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+ F +P+G HGD YDRY++R++EMRESV I+ Q + +
Sbjct: 253 MKFRVPLGDHGDVYDRYMMRILEMRESVSILEQALRDIPAGP------------------ 294
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
I K G GE YA VE+PKGE G YLISDG PYR ++R P
Sbjct: 295 ---------IQDPKTKLRGLRPKAGEAYARVESPKGELGFYLISDGTMNPYRYRVRPPSM 345
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L +E +C G +ADV ILGS+DIV GEVDR
Sbjct: 346 INLTILEDMCLGRNVADVVVILGSVDIVMGEVDR 379
>gi|52140263|ref|YP_086566.1| NADH dehydrogenase subunit D [Bacillus cereus E33L]
gi|81685366|sp|Q630V1|NUOD_BACCZ RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|51973732|gb|AAU15282.1| NADH dehydrogenase I, subunit D (NADH-quinone oxidoreductase, chain
D) [Bacillus cereus E33L]
Length = 366
Score = 361 bits (928), Expect = 7e-98, Method: Composition-based stats.
Identities = 156/391 (39%), Positives = 221/391 (56%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RL++++DGEI++ P IG LHRGTEK+ E+ + Q +PY
Sbjct: 3 RTEEMLLNVGPQHPSTHGVFRLVIKIDGEIIKEATPVIGYLHRGTEKIAESLQYTQIIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY++ M + AVE ++G+EIP R + +RVL E+GRI SHL+ T +D+G
Sbjct: 63 TDRMDYLSAMTNNYVICHAVETMMGLEIPERAEYLRVLAMELGRIASHLVWWGTNLLDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++P L+ F ERE ++ G+R+ Y R GGV D P +E + + L
Sbjct: 123 AVSPFLYAFREREMIINLLNELCGARLTFNYMRVGGVKWDAPDGWIEKVEEFVPYMREQL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
DL++GN IF R +G EDA + SG +R +G WDLRK +PY Y D
Sbjct: 183 AGYHDLVSGNEIFLNRVKGVGIYSEEDAISYSLSGANLRCTGVNWDLRKDEPYSIYDRFD 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F IP+G GD +DRY+ RM E+ ES+KI+ Q V + K G V A PKI+
Sbjct: 243 FHIPVGSVGDAWDRYVCRMQEIEESLKIVEQAVQQFP---KEGAVLAKVPKII------- 292
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE + +E+P+GE G Y+ SDG +PYR K R P + +
Sbjct: 293 ------------------KAPKGEAFVRIESPRGEIGCYIASDGKKEPYRLKFRRPSFYN 334
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L KG +A++ ILG +DIV GEVD
Sbjct: 335 LQILPKLLKGENIANLITILGGVDIVLGEVD 365
>gi|228968419|ref|ZP_04129412.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis serovar sotto str. T04001]
gi|228791278|gb|EEM38887.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis serovar sotto str. T04001]
Length = 366
Score = 361 bits (928), Expect = 7e-98, Method: Composition-based stats.
Identities = 156/391 (39%), Positives = 221/391 (56%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RL++++DGEI+ P IG LHRGTEK+ E+ + Q +PY
Sbjct: 3 RTEEMLLNVGPQHPSTHGVFRLVIKIDGEIIREATPVIGYLHRGTEKIAESLQYTQIIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY++ M + AVE ++G+EIP R + +RVL E+GRI SHL+ T +D+G
Sbjct: 63 TDRMDYLSAMTNNYVICHAVETMMGLEIPERAEYLRVLAMELGRIASHLVWWGTNLLDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++P L+ F ERE ++ G+R+ Y R GGV D P +E + + L
Sbjct: 123 AVSPFLYAFREREMIINLLNELCGARLTFNYMRVGGVKWDAPDGWIEKVEEFVPYMREQL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
DL++GN IF R +G E+A + SG +R +G WDLRK +PY Y D
Sbjct: 183 AGYHDLVSGNEIFLNRVKGVGIYSAEEAISYSLSGANLRCTGVNWDLRKDEPYSIYDLFD 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDIP+G GD +DRY+ RM E+ ES+KI+ Q V + K G V A PKI+
Sbjct: 243 FDIPVGSVGDAWDRYVCRMQEIEESLKIVEQAVQQFP---KDGAVLAKVPKII------- 292
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE + +E+P+GE G Y+ SDG +PYR K R P + +
Sbjct: 293 ------------------KAPKGEAFVRIESPRGEIGCYIASDGKKEPYRLKFRRPSFYN 334
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L KG +A++ ILG +DIV GEVD
Sbjct: 335 LQILPKLLKGENIANLITILGGVDIVLGEVD 365
>gi|227874587|ref|ZP_03992750.1| NADH dehydrogenase (quinone) [Mobiluncus mulieris ATCC 35243]
gi|306817871|ref|ZP_07451610.1| NADH-quinone oxidoreductase subunit D [Mobiluncus mulieris ATCC
35239]
gi|307701359|ref|ZP_07638380.1| NADH dehydrogenase subunit D [Mobiluncus mulieris FB024-16]
gi|227844796|gb|EEJ54942.1| NADH dehydrogenase (quinone) [Mobiluncus mulieris ATCC 35243]
gi|304649350|gb|EFM46636.1| NADH-quinone oxidoreductase subunit D [Mobiluncus mulieris ATCC
35239]
gi|307613520|gb|EFN92768.1| NADH dehydrogenase subunit D [Mobiluncus mulieris FB024-16]
Length = 454
Score = 361 bits (928), Expect = 8e-98, Method: Composition-based stats.
Identities = 170/414 (41%), Positives = 233/414 (56%), Gaps = 19/414 (4%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
++ + +N GP HP+ HGVLR+I+EL+GE V+ + G LH G EK +E +TF Q
Sbjct: 42 IESVHNDRIAVNMGPVHPSTHGVLRVIVELEGETVKDLRLGTGYLHTGIEKSMEYRTFNQ 101
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTT 118
V + R+DYVAPM QE A+ LAVEK LGI +P R IRVL E+ RI SHL+ V T
Sbjct: 102 GVAFCTRMDYVAPMFQEVAWCLAVEKALGITDQVPGRASEIRVLMMELNRIASHLVAVGT 161
Query: 119 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
A ++GA T GF RE+++ +E +G RM+ AY RPGGV D+ P+ V+ +
Sbjct: 162 GANELGATTMLTTGFRAREEILRIFEHVTGLRMNHAYMRPGGVANDLLPDTVQMVRDKMP 221
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
+ ++ DL+ N IF R G + L G +G +R G DLRK+QPY
Sbjct: 222 LVKRDIEEMQDLIMANPIFLGRTKKSGYMPLSAMMALGLTGPCLRAGGLPLDLRKTQPYC 281
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
Y FD+ + D Y R VR EM +S++I+ Q ++RL PV +D K+
Sbjct: 282 GYETYSFDVATAQESDVYARTEVRFEEMFQSLRIVYQALDRLEASVGQ-PVMVADKKLAI 340
Query: 299 P----------------KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGV 342
P + SME LIHHFKL TEGY +P G+V+ VE KG FGV
Sbjct: 341 PGGLTLGPDGQGQNPAHVAQILGSSMEELIHHFKLVTEGYRIPPGQVFQKVEHAKGIFGV 400
Query: 343 YLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L++DGG PYR R P Y++LQ+ +C+G +AD+ +GSLD VFG VDR
Sbjct: 401 HLVTDGGTHPYRAHFREPSYSNLQSASMMCEGGLIADLVVSIGSLDPVFGGVDR 454
>gi|229063947|ref|ZP_04200246.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus AH603]
gi|228716353|gb|EEL68063.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus AH603]
Length = 366
Score = 361 bits (928), Expect = 8e-98, Method: Composition-based stats.
Identities = 153/391 (39%), Positives = 220/391 (56%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RL++++DGEI++ P IG LHRGTEK+ E+ + Q +PY
Sbjct: 3 RTEEMLLNVGPQHPSTHGVFRLVIKIDGEIIKEATPVIGYLHRGTEKIAESLQYTQIIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY++ M + AVE ++ +EIP R + +RVL E+GR+ SHL+ T +D+G
Sbjct: 63 TDRMDYLSAMTNNYVLCHAVETMMDLEIPERAEYLRVLAMELGRVASHLVWWGTNLLDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++P L+ F ERE ++ G+R+ Y R GGV D P +E + + L
Sbjct: 123 AVSPFLYAFREREMIINLLSELCGARLTFNYMRVGGVKWDAPDGWIEKVKEFVPYMREQL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
DL++GN IF R +G E+A + SG +R +G WDLRK +PY Y D
Sbjct: 183 AGYHDLVSGNEIFLNRVKGVGVYNAEEAISYSLSGANLRCTGVNWDLRKDEPYSIYDRFD 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FD+P+G GD +DRY+ RM E+ ES+KII Q + K G V A PKI+
Sbjct: 243 FDVPVGSTGDAWDRYVCRMEEIEESLKIIEQAAQQFP---KDGAVLAKVPKII------- 292
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE + +E+P+GE G Y+ SDG +PYR K R P + +
Sbjct: 293 ------------------KAPKGEAFVRIESPRGEIGCYIASDGKKEPYRLKFRRPSFYN 334
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L KG +A++ ILG +DIV GEVD
Sbjct: 335 LQILPKLLKGENIANLITILGGVDIVLGEVD 365
>gi|229164242|ref|ZP_04292176.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus R309803]
gi|228619264|gb|EEK76156.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus R309803]
Length = 366
Score = 361 bits (928), Expect = 8e-98, Method: Composition-based stats.
Identities = 156/391 (39%), Positives = 222/391 (56%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RL++++DGEI++ P IG LHRGTEK+ E+ + Q +PY
Sbjct: 3 RTEEMLLNVGPQHPSTHGVFRLVIKIDGEIIKEATPVIGYLHRGTEKIAESLQYTQIIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY++ M + AVE ++G+EIP R + +RVL E+GRI SHL+ T +D+G
Sbjct: 63 TDRMDYLSAMTNNYVICHAVETMMGLEIPERAEYLRVLAMELGRIASHLVWWGTNLLDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++P L+ F ERE ++ G+R+ Y R GGV D P VE + + L
Sbjct: 123 AVSPFLYAFREREMIINLLNELCGARLTFNYMRVGGVKWDAPDGWVEKVEEFIPYMREQL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
DL++GN IF R +G E+A + SG +R +G WDLRK +PY Y D
Sbjct: 183 AGYHDLVSGNEIFLNRVKGVGIYSAEEAIAYSLSGANLRCTGVNWDLRKDEPYSIYDRFD 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F+IP+G GD +DRY+ RM E+ ES+KI+ Q V + K G V A PKI+
Sbjct: 243 FNIPVGSLGDAWDRYVCRMEEIEESLKIVEQAVQQFP---KDGAVLAKVPKII------- 292
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE + +E+P+GE G Y+ SDG +PYR K R P + +
Sbjct: 293 ------------------KAPKGEAFVRIESPRGEIGCYIASDGKKEPYRLKFRRPSFYN 334
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L KG +A++ ILG +DIV GEVD
Sbjct: 335 LQILPKLLKGENIANLITILGGVDIVLGEVD 365
>gi|118480337|ref|YP_897488.1| NADH dehydrogenase subunit D [Bacillus thuringiensis str. Al Hakam]
gi|196045689|ref|ZP_03112919.1| NADH dehydrogenase (ubiquinone), D subunit [Bacillus cereus
03BB108]
gi|218534387|sp|A0RL88|NUOD_BACAH RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|118419562|gb|ABK87981.1| NADH dehydrogenase subunit D [Bacillus thuringiensis str. Al Hakam]
gi|196023520|gb|EDX62197.1| NADH dehydrogenase (ubiquinone), D subunit [Bacillus cereus
03BB108]
Length = 366
Score = 361 bits (928), Expect = 8e-98, Method: Composition-based stats.
Identities = 156/391 (39%), Positives = 223/391 (57%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RL++++DGEI++ P IG LHRGTEK+ E+ + Q +PY
Sbjct: 3 RTEEMLLNVGPQHPSTHGVFRLVIKIDGEIIKEATPVIGYLHRGTEKIAESLQYTQIIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY++ M + AVE ++G+EIP R + +RVL E+GRI SHL+ T +D+G
Sbjct: 63 TDRMDYLSAMTNNYVICHAVETMIGLEIPERAEYLRVLAMELGRIASHLVWWGTNLLDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++P L+ F ERE ++ G+R+ Y R GGV D P +E + + L
Sbjct: 123 AVSPFLYAFREREMIINLLNELCGARLTFNYMRVGGVKWDAPDGWIEKVEEFVPYMREQL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
DL++GN IF R +G E+A + SG +R +G WDLRK +PY Y+ D
Sbjct: 183 AGYHDLVSGNEIFLNRVKGVGIYSAEEAISYSLSGANLRCTGVNWDLRKDEPYSIYNRFD 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDIP+G GD +DRY+ RM E+ ES+KI+ Q V + K G V A PKI+
Sbjct: 243 FDIPVGSVGDAWDRYVCRMQEIEESLKIVEQAVQQFP---KEGAVLAKVPKII------- 292
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE + +E+P+GE G Y+ SDG +PYR K R P + +
Sbjct: 293 ------------------KAPKGEAFVRIESPRGEIGCYIASDGKKEPYRLKFRRPSFYN 334
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L KG +A++ ILG +DIV GEVD
Sbjct: 335 LQILPKLLKGENIANLITILGGVDIVLGEVD 365
>gi|269977613|ref|ZP_06184580.1| NADH dehydrogenase (quinone), d subunit [Mobiluncus mulieris 28-1]
gi|269934216|gb|EEZ90783.1| NADH dehydrogenase (quinone), d subunit [Mobiluncus mulieris 28-1]
Length = 454
Score = 361 bits (928), Expect = 8e-98, Method: Composition-based stats.
Identities = 170/414 (41%), Positives = 233/414 (56%), Gaps = 19/414 (4%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
++ + +N GP HP+ HGVLR+I+EL+GE V+ + G LH G EK +E +TF Q
Sbjct: 42 IESVHNDRIAVNMGPVHPSTHGVLRVIVELEGETVKDLRLGTGYLHTGIEKSMEYRTFNQ 101
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTT 118
V + R+DYVAPM QE A+ LAVEK LGI +P R IRVL E+ RI SHL+ V T
Sbjct: 102 GVAFCTRMDYVAPMFQEVAWCLAVEKALGITDQVPGRASEIRVLMMELNRIASHLVAVGT 161
Query: 119 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
A ++GA T GF RE+++ +E +G RM+ AY RPGGV D+ P+ V+ +
Sbjct: 162 GANELGATTMLTTGFRAREEILRIFEHVTGLRMNHAYMRPGGVANDLLPDTVQMVRDKMP 221
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
+ ++ DL+ N IF R G + L G +G +R G DLRK+QPY
Sbjct: 222 LVKRDIEEMQDLIMANPIFLGRTKKAGYMPLSAMMALGLTGPCLRAGGLPLDLRKTQPYC 281
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
Y FD+ + D Y R VR EM +S++I+ Q ++RL PV +D K+
Sbjct: 282 GYETYSFDVATAQESDVYARTEVRFEEMFQSLRIVYQALDRLEASVGQ-PVMVADKKLAI 340
Query: 299 P----------------KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGV 342
P + SME LIHHFKL TEGY +P G+V+ VE KG FGV
Sbjct: 341 PGGLTLGPDGQGQNPAHVAQILGSSMEELIHHFKLVTEGYRIPPGQVFQKVEHAKGIFGV 400
Query: 343 YLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L++DGG PYR R P Y++LQ+ +C+G +AD+ +GSLD VFG VDR
Sbjct: 401 HLVTDGGTHPYRAHFREPSYSNLQSASMMCEGGLIADLVVSIGSLDPVFGGVDR 454
>gi|49481375|ref|YP_039288.1| NADH dehydrogenase subunit D [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|81613474|sp|Q6HAY8|NUOD_BACHK RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|49332931|gb|AAT63577.1| NADH dehydrogenase I, subunit D (NADH-quinone oxidoreductase, chain
D) [Bacillus thuringiensis serovar konkukian str. 97-27]
Length = 366
Score = 361 bits (928), Expect = 8e-98, Method: Composition-based stats.
Identities = 155/391 (39%), Positives = 221/391 (56%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RL++++DGEI++ P IG LHRGTEK+ E+ + Q +PY
Sbjct: 3 RTEEMLLNVGPQHPSTHGVFRLVIKIDGEIIKEATPVIGYLHRGTEKIAESLQYTQIIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY++ M + AVE ++G+EIP R + +RVL E+GRI SHL+ T +D+G
Sbjct: 63 TDRMDYLSAMTNNYVICHAVETMMGLEIPERAEYLRVLAMELGRIASHLVWWGTNLLDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++P L+ F ERE ++ G+R+ Y R GGV D P +E + + L
Sbjct: 123 AVSPFLYAFREREMIINLLNELCGARLTFNYMRVGGVKWDAPDGWIEKVEEFVPYMREQL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
DL++GN IF R +G E+A + SG +R +G WDLRK +PY Y D
Sbjct: 183 AGYHDLVSGNEIFLNRVKGVGIYSAEEAISYSLSGANLRCTGVNWDLRKDEPYSIYDRFD 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F IP+G GD +DRY+ RM E+ ES+KI+ Q V + K G V A PKI+
Sbjct: 243 FHIPVGSVGDAWDRYVCRMQEIEESLKIVEQAVQQFP---KEGAVLAKVPKII------- 292
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE + +E+P+GE G Y+ SDG +PYR K R P + +
Sbjct: 293 ------------------KAPKGEAFVRIESPRGEIGCYIASDGKKEPYRLKFRRPSFYN 334
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L KG +A++ ILG +DIV GEVD
Sbjct: 335 LQILPKLLKGENIANLITILGGVDIVLGEVD 365
>gi|218900423|ref|YP_002448834.1| NADH dehydrogenase (quinone), d subunit [Bacillus cereus G9842]
gi|228903771|ref|ZP_04067888.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis IBL 4222]
gi|218543238|gb|ACK95632.1| NADH dehydrogenase (quinone), d subunit [Bacillus cereus G9842]
gi|228855860|gb|EEN00403.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis IBL 4222]
Length = 366
Score = 361 bits (928), Expect = 9e-98, Method: Composition-based stats.
Identities = 156/391 (39%), Positives = 221/391 (56%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RL++++DGEI+ P IG LHRGTEK+ E+ + Q +PY
Sbjct: 3 RTEEMLLNVGPQHPSTHGVFRLVIKIDGEIIREATPVIGYLHRGTEKIAESLQYTQIIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY++ M + AVE ++G+EIP R + +RVL E+GRI SHL+ T +D+G
Sbjct: 63 TDRMDYLSAMTNNYVICHAVETMMGLEIPERAEYLRVLAMELGRIASHLVWWGTNLLDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++P L+ F ERE ++ G+R+ Y R GGV D P +E + + L
Sbjct: 123 AVSPFLYAFREREMIINLLNELCGARLTFNYMRVGGVKWDAPDGWIEKVEEFVPYMREQL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
DL++GN IF R +G E+A + SG +R +G WDLRK +PY Y D
Sbjct: 183 AGYHDLVSGNEIFLNRVKGVGIYSAEEAISYSLSGANLRCTGVNWDLRKDEPYSIYDRFD 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDIP+G GD +DRY+ RM E+ ES+KI+ Q V + K G V A PKI+
Sbjct: 243 FDIPVGSVGDAWDRYVCRMQEIEESLKIVEQAVQQFP---KDGAVLAKVPKII------- 292
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE + +E+P+GE G Y+ SDG +PYR K R P + +
Sbjct: 293 ------------------KAPKGEAFVRIESPRGEIGCYIASDGKKEPYRLKFRRPSFYN 334
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L KG +A++ ILG +DIV GEVD
Sbjct: 335 LQILPKLLKGENIANLITILGGVDIVLGEVD 365
>gi|150026260|ref|YP_001297086.1| NADH dehydrogenase I, D subunit [Flavobacterium psychrophilum
JIP02/86]
gi|218534448|sp|A6H1R1|NUOD_FLAPJ RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|149772801|emb|CAL44285.1| NADH dehydrogenase I, D subunit [Flavobacterium psychrophilum
JIP02/86]
Length = 412
Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats.
Identities = 151/395 (38%), Positives = 224/395 (56%), Gaps = 3/395 (0%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+++ S +N GP HPA HG+ + IL +DGE + +P IG +HR EK+ E + F Q
Sbjct: 20 LNEDGSELSILNLGPTHPATHGIFQNILLMDGERIVDAEPTIGYIHRAFEKIAENRPFYQ 79
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
P DR++Y + A+ + +EKLL IE+P R Q +RV+ E+ RI H++ +
Sbjct: 80 ITPLTDRMNYCSSPINNMAWWMTLEKLLDIEVPKRAQYLRVIVMELARITDHIICNSILG 139
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+D GA T L+ F+ REK+ YE G+R+ R GG +D P+ + + + + F
Sbjct: 140 VDTGAYTGFLYVFQFREKIYEIYEEICGARLTTNMGRIGGFERDWSPKAFQLLNTFLEEF 199
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P A + +L NRIF R VN+G + E A +GF+G +R +G +D+R ++PY Y
Sbjct: 200 PIAWKEFENLFERNRIFIDRTVNVGAISAEKAMAYGFTGPNLRAAGIDYDVRVAEPYSSY 259
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+ +F IP+GK GD YDR+ VR E+ ES+ IIRQ + ++ N A P P
Sbjct: 260 EDFEFIIPVGKSGDTYDRFCVRNAEVWESLSIIRQALAKMPEGNV---YHAEVPDYYLPP 316
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ D+ +MESLI+HFK+ VPV E+Y AVE GE G YL +DG PYR R P
Sbjct: 317 KEDVYHNMESLIYHFKIVMGEVPVPVAEIYHAVEGGNGELGFYLTTDGSRTPYRLHFRRP 376
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ + QA + KG L+D IL SL+++ GE+D
Sbjct: 377 CFIYYQAYPEMIKGALLSDAIVILSSLNVIAGELD 411
>gi|194336919|ref|YP_002018713.1| NADH dehydrogenase (quinone) [Pelodictyon phaeoclathratiforme BU-1]
gi|218534446|sp|B4SBZ0|NUOD_PELPB RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|194309396|gb|ACF44096.1| NADH dehydrogenase (quinone) [Pelodictyon phaeoclathratiforme BU-1]
Length = 400
Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats.
Identities = 168/397 (42%), Positives = 230/397 (57%), Gaps = 32/397 (8%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ + GPQHP+ HGVL+L DGE++ +P++G LHR EK E + VPY
Sbjct: 30 TEQMILAMGPQHPSTHGVLKLECLTDGEVITEAEPYLGYLHRCFEKSCEHVDYPAIVPYT 89
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DRLDY+A MN E AYA+AVEKLL IEIP R + IRV+ +E+ RI SHL+ + T +D+GA
Sbjct: 90 DRLDYLASMNSEQAYAMAVEKLLDIEIPRRVEFIRVIVAELNRIASHLVAIGTYGIDLGA 149
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
TP L+ F +RE ++ E ASG+RM Y GG+ D+P + + +G + F
Sbjct: 150 FTPFLFCFRDREIILGLLEWASGARMLYNYIWIGGLAYDVPSDFFKRVGEFVTYFRPKAV 209
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
++ +LLT N IF +R IG + + A +G+SG M+RGSG WDLR++ PY Y ELDF
Sbjct: 210 ELCNLLTENEIFVKRTRGIGIMPADVAINYGWSGPMLRGSGVKWDLRRNDPYSVYPELDF 269
Query: 246 DIPIGK-----HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+P+ GDC R+LVR EM ES+KII QC++++ P SA +I
Sbjct: 270 SVPVPDGKVSVVGDCLSRHLVRAYEMDESLKIIEQCIDKMPTAEGFNPRSAIPKRI---- 325
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG-GNKPYRCKIRA 359
GEVYA E P+GE G Y++SDG KP RCK R+
Sbjct: 326 ----------------------RPKAGEVYARAENPRGELGFYIMSDGKSTKPLRCKARS 363
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +L AM+ L KG + D+ AI+GS+DIV GEVDR
Sbjct: 364 SCFVNLSAMKDLSKGQLIPDLVAIIGSIDIVLGEVDR 400
>gi|229076510|ref|ZP_04209472.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus Rock4-18]
gi|229099730|ref|ZP_04230656.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus Rock3-29]
gi|229105889|ref|ZP_04236515.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus Rock3-28]
gi|229118793|ref|ZP_04248143.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus Rock1-3]
gi|228664663|gb|EEL20155.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus Rock1-3]
gi|228677548|gb|EEL31799.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus Rock3-28]
gi|228683700|gb|EEL37652.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus Rock3-29]
gi|228706696|gb|EEL58907.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus Rock4-18]
Length = 366
Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats.
Identities = 155/391 (39%), Positives = 222/391 (56%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RL++++DGEI++ P IG LHRGTEK+ E+ + Q +PY
Sbjct: 3 RTEEMLLNVGPQHPSTHGVFRLVIKIDGEIIKEATPVIGYLHRGTEKIAESLQYTQIIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY++ M + AVE ++G+EIP R + +RVL E+GRI SHL+ T +D+G
Sbjct: 63 TDRMDYLSAMTNNYVICHAVETMMGLEIPERAEYLRVLAMELGRIASHLVWWGTNLLDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++P L+ F ERE ++ G+R+ Y R GGV D P +E + + L
Sbjct: 123 AVSPFLYAFREREMIINLLNELCGARLTFNYMRVGGVKWDAPDGWIEKVEEFVPYMREQL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
DL++GN IF R +G E+A + SG +R +G WDLRK +PY Y +
Sbjct: 183 AGYHDLVSGNEIFLNRVKGVGIYSAEEAISYSLSGANLRCTGVNWDLRKDEPYSIYDRFN 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDIP+G GD +DRY+ RM E+ ES+KI+ Q V + K G V A PKI+
Sbjct: 243 FDIPVGSVGDAWDRYVCRMEEIEESLKIVEQAVQQFP---KDGAVLAKVPKII------- 292
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE + +E+P+GE G Y+ SDG +PYR K R P + +
Sbjct: 293 ------------------KAPKGEAFVRIESPRGEIGCYIASDGKKEPYRLKFRRPSFYN 334
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L KG +A++ ILG +DIV GEVD
Sbjct: 335 LQILPKLLKGENIANLITILGGVDIVLGEVD 365
>gi|189346376|ref|YP_001942905.1| NADH dehydrogenase (quinone) [Chlorobium limicola DSM 245]
gi|218534398|sp|B3EI96|NUOD_CHLL2 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|189340523|gb|ACD89926.1| NADH dehydrogenase (quinone) [Chlorobium limicola DSM 245]
Length = 395
Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats.
Identities = 170/397 (42%), Positives = 232/397 (58%), Gaps = 32/397 (8%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ ++ GPQHP+ HGVL+L DGE+V +P++G LHR EK E + VPY
Sbjct: 25 TEEMLLSMGPQHPSTHGVLKLECMTDGEVVTSAEPYLGYLHRCFEKHCEVVDYPGIVPYT 84
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DR+DY+A MN E AY +AVEKLL IEIP R + IRV+ SE+ RI SHL+ + T +D+GA
Sbjct: 85 DRMDYLAGMNNEWAYCIAVEKLLDIEIPRRVEFIRVMVSELNRIASHLVAIGTYGIDLGA 144
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
TP L+ F +RE ++ E ASG+RM Y GGV DIP + + + + D F +
Sbjct: 145 FTPFLFCFRDREHILNLLEWASGARMLYNYIWIGGVAFDIPADFNKRVKEFVDYFRPKVV 204
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
++ LLT N IF +R IG + + A + +SG M+RGSG WDLR++ PY Y ELDF
Sbjct: 205 ELYKLLTENEIFVKRTKGIGIMPADVAINYAWSGPMLRGSGVQWDLRRNDPYSVYPELDF 264
Query: 246 DIPIG-----KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+IP+ GDC R+LVR +EM ES+ II QC++++ G + +P+ PK
Sbjct: 265 NIPVPDGKFSDIGDCLSRHLVRALEMEESLNIIEQCISKMPGSDG------FNPRSAVPK 318
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG-GNKPYRCKIRA 359
R GEVYA E P+GE G Y+ SDG KP RCK R+
Sbjct: 319 R--------------------VRPKAGEVYARAENPRGELGFYIQSDGKSTKPLRCKARS 358
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +L AM+ L KG + D+ AI+GS+DIV GEVDR
Sbjct: 359 SCFVNLSAMKDLSKGQLIPDLVAIIGSIDIVLGEVDR 395
>gi|229170004|ref|ZP_04297697.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus AH621]
gi|228613522|gb|EEK70654.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus AH621]
Length = 366
Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats.
Identities = 155/391 (39%), Positives = 221/391 (56%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RL++++DGEI++ P IG LHRGTEK+ E+ + Q +PY
Sbjct: 3 RTEEMLLNVGPQHPSTHGVFRLVIKIDGEIIKEATPVIGYLHRGTEKIAESLQYTQIIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY++ M + AVE ++G+EIP R + +RVL E+GR+ SHL+ T +D+G
Sbjct: 63 TDRMDYLSAMTNNYVLCHAVETMMGLEIPERAEYLRVLAMELGRVASHLVWWGTNLLDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++P L+ F ERE ++ G+R+ Y R GGV D P +E + + L
Sbjct: 123 AVSPFLYAFREREMIINLLSELCGARLTFNYMRVGGVKWDAPDGWIEKVKEFVPYMREQL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
DL++GN IF R +G E+A + SG +R +G WDLRK +PY Y D
Sbjct: 183 AGYHDLVSGNEIFLNRVKGVGVYSAEEAISYSLSGANLRCTGVHWDLRKDEPYSIYDRFD 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDIP+G GD +DRY+ RM E+ ES+KII Q + K G V A PKI+
Sbjct: 243 FDIPVGSTGDAWDRYVCRMKEIEESLKIIEQAAQQFP---KDGAVLAKVPKII------- 292
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE + +E+P+GE G Y+ SDG +PYR K R P + +
Sbjct: 293 ------------------KAPKGEAFVRIESPRGEIGCYIASDGKKEPYRLKFRRPSFYN 334
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L KG +A++ ILG +DIV GEVD
Sbjct: 335 LQILPKLLKGENIANLITILGGVDIVLGEVD 365
>gi|229094406|ref|ZP_04225479.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus Rock3-42]
gi|228689007|gb|EEL42833.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus Rock3-42]
Length = 366
Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats.
Identities = 156/391 (39%), Positives = 222/391 (56%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RL++++DGEI++ P IG LHRGTEK+ E+ + Q +PY
Sbjct: 3 RTEEMLLNVGPQHPSTHGVFRLVIKIDGEIIKEATPVIGYLHRGTEKIAESLQYTQIIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY++ M + AVE ++G+EIP R + +RVL E+GRI SHL+ T +D+G
Sbjct: 63 TDRMDYLSAMTNNYVICHAVETMMGLEIPERAEYLRVLAMELGRIASHLVWWGTNLLDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++P L+ F ERE ++ G+R+ Y R GGV D P +E + + L
Sbjct: 123 AVSPFLYAFREREMIINLLNELCGARLTFNYMRVGGVKWDAPDGWIEKVEEFVPYMREQL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
DL++GN IF R +G E+A + SG +R +G WDLRK +PY Y D
Sbjct: 183 AGYHDLVSGNEIFLNRVKGVGIYSAEEAISYSLSGANLRCTGVNWDLRKDEPYSIYDRFD 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDIP+G GD +DRY+ RM E+ ES+KI+ Q V + K G V A PKI+
Sbjct: 243 FDIPVGSVGDAWDRYVCRMQEIEESLKIVEQAVQQFP---KEGAVLAKVPKII------- 292
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE + +E+P+GE G Y+ SDG +PYR K R P + +
Sbjct: 293 ------------------KAPKGEAFVRIESPRGEIGCYIASDGKKEPYRLKFRRPSFYN 334
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L KG +A++ ILG +DIV GEVD
Sbjct: 335 LQILPRLLKGENIANLITILGGVDIVLGEVD 365
>gi|189500536|ref|YP_001960006.1| NADH dehydrogenase (quinone) [Chlorobium phaeobacteroides BS1]
gi|218534400|sp|B3EK98|NUOD_CHLPB RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|189495977|gb|ACE04525.1| NADH dehydrogenase (quinone) [Chlorobium phaeobacteroides BS1]
Length = 400
Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats.
Identities = 162/397 (40%), Positives = 222/397 (55%), Gaps = 32/397 (8%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
S +N GPQHP+ HGVLRL + DGE+V +P++G LHR EK E + VP+
Sbjct: 30 SEEMILNMGPQHPSTHGVLRLECKTDGEVVIEAEPYLGYLHRCFEKHAEMVDYPGIVPFV 89
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DR+DY+A MN + AY +AVEKLL IEIP R + +RV+ SEI RI SHL+ + T A+D+GA
Sbjct: 90 DRMDYLASMNNDFAYCIAVEKLLDIEIPRRVEFMRVIVSEINRIASHLVAIGTYAIDLGA 149
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
TP L+ F +RE ++ E SG+RM Y GGV D P + + F
Sbjct: 150 FTPFLFCFRDREHMLNLLEWTSGARMLYNYILIGGVAYDFPKDFARRTLEFVKYFRPKAL 209
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
++ LLT N IF +R +G + + A +G+SG M+RGSG WDLR+ Y Y ELDF
Sbjct: 210 ELQKLLTENEIFVKRTKGVGMMPADVAINYGWSGPMLRGSGVEWDLRRVDGYSVYPELDF 269
Query: 246 DIPIG-----KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+ + GD R++VR +E+ ES+ II QC++++ + DP+ PK
Sbjct: 270 KVCVPDGKFSDIGDSLSRHVVRALEIEESLNIIEQCLDKMPEEEG------FDPRSAIPK 323
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG-GNKPYRCKIRA 359
R GEVY E P+GE G Y+ISDG KP RCK R+
Sbjct: 324 R--------------------IRPKAGEVYGRAENPRGELGFYIISDGKSTKPLRCKARS 363
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +L AM+ L G + D+ AI+GS+DIV GEVDR
Sbjct: 364 SCFVNLSAMKELSLGQLIPDLVAIIGSIDIVLGEVDR 400
>gi|300717649|ref|YP_003742452.1| NADH dehydrogenase I subunit C/D [Erwinia billingiae Eb661]
gi|299063485|emb|CAX60605.1| NADH dehydrogenase I subunit C/D [Erwinia billingiae Eb661]
Length = 599
Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats.
Identities = 148/391 (37%), Positives = 220/391 (56%), Gaps = 5/391 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GP HP+AHG R+IL+LDGE + P +G HRG EK+ E +++ +PY D
Sbjct: 213 DFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDVGYHHRGAEKMGERQSWHSYIPYTD 272
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R++Y+ E Y LAVEKL GI++P R +IRV+ SE+ RI SHLL ++T DVGA+
Sbjct: 273 RIEYLGGCVNEMPYVLAVEKLAGIKVPERVDVIRVMLSELFRINSHLLYISTFIQDVGAM 332
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
+P + F +R+K+ E +G RMH A+FR GGV D+P + + + P L
Sbjct: 333 SPVFFAFTDRQKIYDVVEAITGFRMHPAWFRIGGVAHDLPKGWEGLLREFINWLPKRLKA 392
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
N + R+ + +E+A WG +G +R +G +D+RK +PY Y DF+
Sbjct: 393 YEQTALKNSVLIARSKGVSAYNMEEALAWGTTGAGLRATGLDFDVRKWRPYSGYENFDFE 452
Query: 247 IPIGKHGDC-YDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
IPIG C Y R +++M EMR+S++I+ QC+N + GP A P PP +
Sbjct: 453 IPIGDGVSCAYTRVMLKMEEMRQSLRILEQCLNNM----PEGPFKADHPLTTPPPKERTL 508
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
+ +E+LI HF + G +P E + +EA KG YL SDG YR ++R P + HL
Sbjct: 509 QHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPSFPHL 568
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Q + + G ++D+ LGS+D V +VDR
Sbjct: 569 QQIPSVINGSLVSDLIVYLGSIDFVMSDVDR 599
>gi|192293102|ref|YP_001993707.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Rhodopseudomonas palustris TIE-1]
gi|218528058|sp|B3Q6T3|NUOCD_RHOPT RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|192286851|gb|ACF03232.1| NADH dehydrogenase I, D subunit [Rhodopseudomonas palustris TIE-1]
Length = 581
Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats.
Identities = 159/390 (40%), Positives = 226/390 (57%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N+GP A HGV R++L LDGE + P IG HRG EK+ E +T+ +PY D
Sbjct: 196 ELMILNYGPHSMATHGVFRIVLALDGEEIVAARPDIGFHHRGAEKMAERQTWHNFLPYTD 255
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+DY+ + E Y AVEK GI++P R +R++ SE+ RI++HLL T A D GA+
Sbjct: 256 RVDYLGGVMGEMPYLQAVEKACGIKVPDRALTVRIMLSEMFRIMNHLLFYGTMAQDTGAM 315
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
+P + F +RE+ E +G+RMH +FR GG+ D+P + + D PS L+D
Sbjct: 316 SPVFYMFTDRERGYRVIESITGARMHPGFFRIGGLSMDLPHGWDRLVREFLDWMPSRLDD 375
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
++ N IF+ R I A WG +G +R +G AWD+RK++PY + DF+
Sbjct: 376 YEGMVLRNEIFRARTKGIAAYDTAMALDWGVTGPGLRATGYAWDVRKARPYAGFENFDFE 435
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
IP+G GDCYDR +VR+ E+R+S+KIIRQCV+ + GP+ A P PP R M
Sbjct: 436 IPVGHAGDCYDRTVVRVEEIRQSLKIIRQCVDNM----PSGPIKADHPLTTPPPRERMLH 491
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+E++IHHF + G +P GE VE +G LISDG YR +IR P +AHLQ
Sbjct: 492 DIETMIHHFVSTSWGPVLPPGEYTGQVETVRGLTQFALISDGEPSSYRTRIRTPSFAHLQ 551
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + G +AD+ A LGS+D V +VDR
Sbjct: 552 MISAVAPGMMVADLVAYLGSIDYVMSDVDR 581
>gi|128848|sp|P15689|NDUS2_PARTE RecName: Full=NADH-ubiquinone oxidoreductase 49 kDa subunit;
AltName: Full=NADH dehydrogenase subunit 7
gi|578751|emb|CAA34042.1| unnamed protein product [Paramecium aurelia]
gi|1019629|gb|AAA79254.1| ORF 400 [Paramecium aurelia]
Length = 400
Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats.
Identities = 193/395 (48%), Positives = 270/395 (68%), Gaps = 9/395 (2%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
+NFGPQHPAAHGVLRLIL+L+GE+VE++D HIGLLHRG+EKL+ETK +LQ++PYFDRLDY
Sbjct: 6 VNFGPQHPAAHGVLRLILQLNGEVVEKMDIHIGLLHRGSEKLMETKPYLQSMPYFDRLDY 65
Query: 71 VAPMNQEHAYALAVEKLLGIE-IPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
V+ M QEHAY LA+E LL L+R ++ E+ RIL+H+L + A+D+G+++
Sbjct: 66 VSMMVQEHAYCLAIEALLNTTNYTANFVLVRTMFDELTRILNHMLAIACHALDIGSMSSI 125
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP-ELVEDIGCWCDSFPSALNDIS 188
W FEEREK+M FYER G RMHAA++RP V+ + +L+ DI + ++ + L+++
Sbjct: 126 FWAFEEREKIMEFYERVCGRRMHAAFYRPNEVNLNFLSVKLLTDILEFNNNCLTTLSEMH 185
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRK--SQPYECYSELDFD 246
++LT N+I+KQR VNIG++ +D +G +GVM R +G DLR Y Y L+F
Sbjct: 186 NILTYNKIWKQRLVNIGSISYKDCLDFGLTGVMARSTGIKRDLRMDAFDTYANYYYLNFR 245
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSA-----SDPKIVPPKR 301
G+ GD YDR+L+RM EM ES+ II Q + +L ++ + K +
Sbjct: 246 SYTGQAGDSYDRFLIRMNEMSESINIISQAIFKLTTSKNTCSPASILKALNKKKFISQTY 305
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ SME LI HFK ++EG+ + Y AVE+PKGEFGV L+SDG NKPYRCK+R+P
Sbjct: 306 KNEYSSMEKLITHFKYWSEGFKIQSNWTYQAVESPKGEFGVTLVSDGSNKPYRCKVRSPA 365
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Y HLQ + + KGH LAD+SA++G++DIVFGE+DR
Sbjct: 366 YHHLQVLPKMSKGHLLADLSALIGTIDIVFGEIDR 400
>gi|152977484|ref|YP_001377001.1| NADH dehydrogenase subunit D [Bacillus cereus subsp. cytotoxis NVH
391-98]
gi|218534388|sp|A7GV48|NUOD_BACCN RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|152026236|gb|ABS24006.1| NADH dehydrogenase I, D subunit [Bacillus cytotoxicus NVH 391-98]
Length = 366
Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats.
Identities = 152/391 (38%), Positives = 224/391 (57%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RLI+++DGE ++ P IG LHRGTEK+ E+ + Q +PY
Sbjct: 3 RTEEMLLNVGPQHPSTHGVFRLIIKIDGETIKEATPVIGYLHRGTEKIAESLQYTQIIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY++ M + AVE ++G+EIP R + +RVL E+GR+ SHL+ T +D+G
Sbjct: 63 TDRMDYLSAMTNNYVICHAVETMMGLEIPERAEYLRVLAMELGRVASHLVWWGTNLLDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++P L+ F ERE ++ G+R+ Y R GGV D P ++ + + L
Sbjct: 123 AVSPFLYAFREREMVINLLNELCGARLTFNYMRVGGVKWDAPDGWIQKVREFVPYMKEQL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
DL++GN IF R IG E+A + SG +R +G WD+RK +PY Y++ D
Sbjct: 183 KGYHDLVSGNEIFVNRVKGIGIYSAEEAISYSLSGANLRCTGVKWDIRKDEPYSIYNQFD 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FD+P+G+ GD +DRY+ RM E+ ES+KII Q + K G V A P+I+
Sbjct: 243 FDVPVGEVGDAWDRYMCRMAEIEESLKIIEQAAEQFP---KEGSVMAKVPRII------- 292
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
VP GE + +E+P+GE G Y+ S+G +PYR K R P + +
Sbjct: 293 ------------------KVPKGEAFVRIESPRGEIGCYIASEGKKEPYRLKFRRPSFYN 334
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L KG +A++ ILG +DIV GEVD
Sbjct: 335 LQILPKLLKGENIANLITILGGVDIVLGEVD 365
>gi|150017834|ref|YP_001310088.1| NADH dehydrogenase subunit D [Clostridium beijerinckii NCIMB 8052]
gi|229891288|sp|A6LXQ2|NUOD_CLOB8 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|149904299|gb|ABR35132.1| NADH dehydrogenase I, D subunit [Clostridium beijerinckii NCIMB
8052]
Length = 370
Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats.
Identities = 150/394 (38%), Positives = 223/394 (56%), Gaps = 29/394 (7%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ + T+NFGPQHP+ HGV R I LDGE + V+ IG LHRG EKL E++T+ Q +
Sbjct: 6 ELHTEEMTLNFGPQHPSTHGVYRAIFTLDGEHIVNVENIIGYLHRGMEKLAESRTYTQFI 65
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DRLDY++ M E Y VEKL GIE+P R + IR++ +E+ RI SH + + + A+D
Sbjct: 66 PYTDRLDYLSGMLNELGYVQTVEKLAGIEVPERAEYIRIIMAELQRIASHQVFLGSMALD 125
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+ TP ++ F +REK++ E GSRM Y R GGV D+P E + + + +
Sbjct: 126 LNGHTPWMYFFRDREKVLDLLEMVCGSRMTTNYMRIGGVSYDLPEEFMPSLKSFLNDMDK 185
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ + ++TGN IF+ R +G + E A +G +G +R SG DLR+ PY Y
Sbjct: 186 SFIEYERIITGNEIFQARTKGVGIISGEKALAYGLTGPNLRASGIDLDLRRDAPYGIYDR 245
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+F + +GK GDCY+R+++R+ EM ES+KII+Q + ++ K GPV A P+++
Sbjct: 246 FNFKVIVGKDGDCYERWIMRIDEMEESIKIIKQALEQI----KEGPVLAKVPRLI----- 296
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
P G++Y +E KG G Y++SDG +KPYR I P +
Sbjct: 297 --------------------KPPKGDIYHQIEGAKGVLGYYIVSDGCDKPYRIHIHGPSF 336
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ A + G + D AIL SLD + GE+DR
Sbjct: 337 VNIGAFPEMATGSTIQDAVAILASLDPILGEIDR 370
>gi|296274178|ref|YP_003656809.1| NADH-ubiquinone oxidoreductase subunit 49kDa [Arcobacter
nitrofigilis DSM 7299]
gi|296098352|gb|ADG94302.1| NADH-ubiquinone oxidoreductase chain 49kDa [Arcobacter nitrofigilis
DSM 7299]
Length = 544
Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats.
Identities = 139/390 (35%), Positives = 210/390 (53%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GP HPA+HG +R + ++GE + IG LHRG EK ET + Q +PY D
Sbjct: 159 ELMLLNVGPSHPASHGTIRNFVAMEGETITACVTEIGYLHRGFEKACETHNYSQVIPYTD 218
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RL+Y + + YA AVE +L I+I R ++IR++ E+ RI HL+ +D+G L
Sbjct: 219 RLNYCSAILNNIGYAKAVEDMLNIDITPRAKMIRIVIGELSRITDHLVCNAANMVDMGGL 278
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
T + F R+K + +G+R+ +Y R GG+ D+ D+ A+ D
Sbjct: 279 TNYWYLFAPRDKAYDILSKLTGARLTNSYTRIGGLEFDLYDGFERDLNEVLRDVEKAIED 338
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
L+ NRIF+ R ++G + E A G +G +R +G A+DLRK +PY Y DFD
Sbjct: 339 ALSLVERNRIFQDRTQDVGIIDAEFALSAGITGPNLRATGVAFDLRKDKPYYGYENFDFD 398
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ +G HGD YDR++ R EM++S++II Q + + GP++ P I P + D+
Sbjct: 399 VVVGSHGDVYDRFMCRFEEMKQSIRIIEQAMKEMPD----GPINVGAPGIFLPAKKDVYG 454
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
++E L++ FKL EG VP GE Y E GE G ++ SDG PY+ K R P + L
Sbjct: 455 NIEGLMNQFKLTFEGIKVPKGEYYGFTEGGNGELGFHITSDGTGTPYKVKCRPPSFYSLA 514
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A + + LAD + S++ + GE DR
Sbjct: 515 AYAKIVENSMLADAVITMASMNFIAGEFDR 544
>gi|91975808|ref|YP_568467.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Rhodopseudomonas palustris BisB5]
gi|123722051|sp|Q13BH3|NUOCD_RHOPS RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|91682264|gb|ABE38566.1| NADH dehydrogenase I, D subunit [Rhodopseudomonas palustris BisB5]
Length = 581
Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats.
Identities = 160/390 (41%), Positives = 228/390 (58%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N+GP A HGV R++L LDGE + P IG HRG EK+ E +T+ +PY D
Sbjct: 196 ELMILNYGPHSMATHGVFRIVLALDGEEIVAARPDIGFHHRGAEKMAERQTWHSFLPYTD 255
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+DY+ + E Y AVEK GI +P R ++RV+ SEI RI++HLL T A D GA+
Sbjct: 256 RVDYLGGVMGEMPYLQAVEKACGITVPDRALMVRVMLSEIFRIMNHLLFYGTMAQDTGAM 315
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
+P + F +RE+ E +G+RMH +FR GG+ D+P + + D PS L+D
Sbjct: 316 SPVFYMFVDRERAYRVIESITGARMHPGFFRIGGLSMDLPQGWDGLVREFLDWMPSRLDD 375
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
++ N IF+ R +G A WG +G +R +G AWD+RK++PY + DF+
Sbjct: 376 YEGMVLRNEIFRARTKGVGAYDTAMALDWGVTGPGLRATGYAWDVRKARPYAGFENFDFE 435
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
IP+G +GDC+DR +VR+ E+R+S+KIIRQCV+ + GP+ A P PP R M
Sbjct: 436 IPVGVNGDCFDRTVVRVEEIRQSLKIIRQCVDNM----PSGPIKADHPLTTPPPRERMLH 491
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+E++IHHF + G +P GE VE +G LISDG YR +IR P +AHLQ
Sbjct: 492 DIETMIHHFVGASWGPVLPAGEYTGQVETVRGLTQFALISDGEPSSYRTRIRTPSFAHLQ 551
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + G +AD+ A LGS+D V +VDR
Sbjct: 552 MISAVAPGMMVADLVAFLGSIDYVMSDVDR 581
>gi|42524475|ref|NP_969855.1| NADH dehydrogenase I,D subunit [Bdellovibrio bacteriovorus HD100]
gi|81616435|sp|Q6MIR5|NUOCD_BDEBA RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D; AltName: Full=NUO3/NUO4
gi|39576684|emb|CAE80848.1| NADH dehydrogenase I,D subunit [Bdellovibrio bacteriovorus HD100]
Length = 560
Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats.
Identities = 164/395 (41%), Positives = 237/395 (60%), Gaps = 4/395 (1%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
D + +N GP H A HG LR++ E+DGE + R + IG LHR EK+ ET + Q
Sbjct: 170 DVLNDKYLPLNIGPSHTAMHGTLRVMAEMDGETIVRCNNEIGYLHRCFEKMAETHPYNQV 229
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+PY DRL+Y + Y AVE+LLG+EIP + Q +RV+ +E+ RI+ H + + T AM
Sbjct: 230 IPYTDRLNYCSAPMNNIGYCKAVERLLGVEIPPKAQAMRVILAELSRIIDHTIAIGTGAM 289
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D+GALT + F REK+ +E+ G+R+ + R GG+ QD P +++
Sbjct: 290 DLGALTSFFYMFGMREKVYGLFEKLCGARLTVSMTRIGGMAQDAPEGWFDEVLALVKEIR 349
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++++++ N+IF QR N+ V DA WG++G M+R G DLRK+QPY Y
Sbjct: 350 KGTDEMANMVIDNKIFIQRTKNVCPVSAADAIQWGYTGPMLRACGVNLDLRKAQPYYGYD 409
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
LDFD+P+G +GD YDRYLVR EMR+SV+II Q + G G + D IV P++
Sbjct: 410 ALDFDVPVGTNGDIYDRYLVRFEEMRQSVRIIEQVCKNVPG----GDYTIRDKGIVLPEK 465
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
D+ ++E L++HF L +G PVGEVY A EA GE G YL+SDG PYR K+R P
Sbjct: 466 KDVYGNIEGLMNHFMLIIKGLRPPVGEVYDATEAANGELGFYLVSDGSANPYRLKVRPPC 525
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+A Q+ + KG LAD A + S++++ GE+DR
Sbjct: 526 FAIYQSFPTVVKGAMLADAIATVASMNLIAGELDR 560
>gi|228994016|ref|ZP_04153918.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus pseudomycoides DSM 12442]
gi|229000085|ref|ZP_04159655.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus mycoides Rock3-17]
gi|228759622|gb|EEM08598.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus mycoides Rock3-17]
gi|228765814|gb|EEM14466.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus pseudomycoides DSM 12442]
Length = 366
Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats.
Identities = 155/391 (39%), Positives = 221/391 (56%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RL++++DGEI++ P IG LHRGTEK+ E+ + Q +PY
Sbjct: 3 RTEEMLLNVGPQHPSTHGVFRLVIKIDGEIIKEATPVIGYLHRGTEKIAESLQYTQIIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY++ M + AVE ++G+EIP R + +RVL E+GR+ SHL+ T +D+G
Sbjct: 63 TDRMDYLSAMTNNYVICHAVETMMGLEIPERAEYLRVLAMELGRVASHLVWWGTNLLDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++P L+ F ERE ++ G+R+ Y R GGV D P + + + L
Sbjct: 123 AVSPFLYAFREREMIINLLNELCGARLTFNYMRVGGVKWDAPDGWIRKVREFVPYMREQL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
DL++GN IF R +G EDA + SG +R +G WDLRK +PY Y D
Sbjct: 183 KGYHDLVSGNEIFLNRVKGVGIYSAEDALSYSLSGANLRCTGVKWDLRKDEPYSIYDRFD 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDIP+G GD +DRY+ RM E+ ES+KII Q + GPV A PKI+
Sbjct: 243 FDIPVGNVGDAWDRYVCRMEEIEESLKIIEQAAEQFPS---EGPVLAKVPKII------- 292
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GEV+ +E+P+GE G Y+ S+G +PYR K R P + +
Sbjct: 293 ------------------KAPKGEVFVRIESPRGEIGCYIASEGKKEPYRLKFRRPSFYN 334
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L KG +A++ ILG +DIV GEVD
Sbjct: 335 LQILPKLLKGENIANLITILGGVDIVLGEVD 365
>gi|170105687|ref|XP_001884056.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164641236|gb|EDR05498.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 595
Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats.
Identities = 209/395 (52%), Positives = 267/395 (67%), Gaps = 33/395 (8%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ K R FT+NFGPQHPAAHGVLR+ILEL+GE + R DPHIGLLHRGTEKLIE KT++QA
Sbjct: 73 EDAKMRHFTVNFGPQHPAAHGVLRMILELNGEEILRADPHIGLLHRGTEKLIEYKTYIQA 132
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+PYFDRLDYV+ M E Y+LAVEKLL IE+P Q IRVL+ EI RIL+HL+ + T M
Sbjct: 133 LPYFDRLDYVSMMTNELCYSLAVEKLLNIEVPACAQWIRVLFGEITRILNHLMAILTHVM 192
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
DVG LTP + D+P L++DI W F
Sbjct: 193 DVGGLTPSSGASK---------------------------TFDLPHGLLDDIFKWGTQFS 225
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
S +++I +++TGNRI+K+R + IG V + A FSGVM+RGSG AWDLRK PY+ Y
Sbjct: 226 SRVDEIEEVVTGNRIWKERTIGIGPVTAKQALDHSFSGVMLRGSGVAWDLRKVAPYDKYD 285
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
E++FDIP+GK+GDCYDRYL R+ EMRES++II Q +N++ G V D K+VPP R
Sbjct: 286 EVEFDIPVGKNGDCYDRYLCRVQEMRESLRIISQALNKIT----PGAVKVDDHKLVPPPR 341
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
A MK SMESLIHHFK+++EGY VP GE Y+A+EAPKG GVYL+SDG N+PYRC IRAPG
Sbjct: 342 AMMKESMESLIHHFKIFSEGYSVPPGETYSAIEAPKGAMGVYLVSDGSNRPYRCSIRAPG 401
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AHL F+ + ++ L +L + ++R
Sbjct: 402 FAHLAGSYFMMR--HVSHFFTCLVTLGVSPTCINR 434
>gi|229007604|ref|ZP_04165199.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus mycoides Rock1-4]
gi|228753742|gb|EEM03185.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus mycoides Rock1-4]
Length = 366
Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats.
Identities = 155/391 (39%), Positives = 221/391 (56%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RL++++DGEI++ P IG LHRGTEK+ E+ + Q +PY
Sbjct: 3 RTEEMLLNVGPQHPSTHGVFRLVIKIDGEIIKEATPVIGYLHRGTEKIAESLQYTQIIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY++ M + AVE ++G+EIP R + +RVL E+GR+ SHL+ T +D+G
Sbjct: 63 TDRMDYLSAMTNNYVICHAVETMMGLEIPERAEYLRVLAMELGRVASHLVWWGTNLLDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++P L+ F ERE ++ G+R+ Y R GGV D P + + + L
Sbjct: 123 AVSPFLYAFREREMIINLLNELCGARLTFNYMRVGGVKWDAPDGWIRKVREFVPYMREQL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
DL++GN IF R +G EDA + SG +R +G WDLRK +PY Y D
Sbjct: 183 KGYHDLVSGNEIFLNRVKGVGIYSAEDALSYSLSGANLRCTGVKWDLRKDEPYSIYDRFD 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDIP+G GD +DRY+ RM E+ ES+KII Q + GPV A PKI+
Sbjct: 243 FDIPVGNVGDAWDRYVCRMGEIEESLKIIEQAAEQFPS---EGPVLAKVPKII------- 292
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GEV+ +E+P+GE G Y+ S+G +PYR K R P + +
Sbjct: 293 ------------------KAPKGEVFVRIESPRGEIGCYIASEGKKEPYRLKFRRPSFYN 334
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L KG +A++ ILG +DIV GEVD
Sbjct: 335 LQILPKLLKGENIANLITILGGVDIVLGEVD 365
>gi|289548983|ref|YP_003473971.1| NADH-ubiquinone oxidoreductase chain 49kDa [Thermocrinis albus DSM
14484]
gi|289182600|gb|ADC89844.1| NADH-ubiquinone oxidoreductase chain 49kDa [Thermocrinis albus DSM
14484]
Length = 572
Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats.
Identities = 166/395 (42%), Positives = 238/395 (60%), Gaps = 16/395 (4%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+K +N+GP HP HG + + +L+GE V + D +G LHRG EKL E + + Q +
Sbjct: 192 QKKAQLVLNWGPLHPGTHGTMWFLFDLEGERVVQCDVILGQLHRGVEKLAENEMYNQFLV 251
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
Y DR+DY++ + A+ +AVE+LLGIE +P + + IR + SE+ RI SHLL + T A+
Sbjct: 252 YTDRMDYISALCSNQAWVVAVERLLGIEDLVPEKAKYIRTMMSELQRINSHLLWLGTYAL 311
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D+GALT L+ F+EREK+M E +G+R+ Y R GGV D+P +E I + P
Sbjct: 312 DIGALTIFLYAFKEREKIMDIIEGITGARLTITYPRIGGVRMDLPEGALEVIKAFIKRLP 371
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
L + +L+ NRI+ +RN +IG + ED + +G +G + RGSG +DLRK +PY+ Y
Sbjct: 372 YELREWETILSRNRIWLRRNKDIGVITEEDVYYYGLTGPVARGSGVPYDLRKLEPYDAYP 431
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
++FD+P+G+ GD YDRYLVR+ EMR+SV+II QCV +L K P A P
Sbjct: 432 WVEFDVPVGEVGDVYDRYLVRLEEMRQSVRIIEQCVQKLEKMPKDAPFFAES-----PDP 486
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+K +++ + G VP GE+Y++ E P+GE G Y+ S GG KPYR KIR
Sbjct: 487 KKLKLTLDGI---------GLKVPEGEIYSSGENPRGELGFYIYSTGGVKPYRVKIRPGS 537
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L L K +AD AIL SLD V GE+DR
Sbjct: 538 MYNLCVYPKLMKDRVVADAVAILASLDPVVGEIDR 572
>gi|229891497|sp|Q2IL06|NUOD1_ANADE RecName: Full=NADH-quinone oxidoreductase subunit D 1; AltName:
Full=NADH dehydrogenase I subunit D 1; AltName:
Full=NDH-1 subunit D 1
Length = 430
Score = 360 bits (923), Expect = 3e-97, Method: Composition-based stats.
Identities = 171/390 (43%), Positives = 235/390 (60%), Gaps = 4/390 (1%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
S+ IN GP HPA HGV R ++EL+GEI+E + IG LHRG EK E T+ Q PY
Sbjct: 44 SKHMVINLGPSHPAMHGVTRAVVELNGEIIEEMKLDIGFLHRGFEKSCENVTWGQVFPYT 103
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DRL+YV+ + +ALAVEKL +EIP R + +RV+ SEI RI HL V AM++GA
Sbjct: 104 DRLNYVSSIMNNVGFALAVEKLAKLEIPERARYLRVITSEIHRICDHLTLVGAMAMELGA 163
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+T L+G E R+ L G+R+ + Y R GGV +D+P E D +
Sbjct: 164 MTVFLYGIEARDLLWDRLAELCGARLTSNYARIGGVARDMPEGWQEKTLKVLDRVVAIRE 223
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+I LL NRIF R +N G V EDA GF+G +R SG +D+RK+ PY Y LDF
Sbjct: 224 EIGQLLNRNRIFIDRCLNTGKVSREDALELGFTGPCLRASGEPYDIRKAAPYLVYDRLDF 283
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
DIP+G +GD +DRYL+RM EMR+S KIIRQC ++ G + D + P + +
Sbjct: 284 DIPVGSNGDNFDRYLMRMEEMRQSDKIIRQCFEQMA----PGEIIVQDFRYALPPKPLVY 339
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
++E ++ HFKL EG VP GEVY+ EA GE G Y++SDGG +PY+ +RAPG+ L
Sbjct: 340 GTIEGVMAHFKLVMEGIKVPAGEVYSYTEAANGELGFYVVSDGGGRPYKLGLRAPGWPML 399
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
A+ + KG L+D+ S++++ GEV+
Sbjct: 400 AALPVMTKGSLLSDLIPTFDSINMIGGEVE 429
>gi|229199419|ref|ZP_04326084.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus m1293]
gi|228584133|gb|EEK42286.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus m1293]
Length = 366
Score = 360 bits (923), Expect = 3e-97, Method: Composition-based stats.
Identities = 155/391 (39%), Positives = 221/391 (56%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RL++++DGEI++ P IG LHRGTEK+ E+ + Q +PY
Sbjct: 3 RTEEMLLNVGPQHPSTHGVFRLVIKIDGEIIKEATPVIGYLHRGTEKIAESLQYTQIIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY++ M + AVE ++G+EIP R + +RVL E+GRI SHL+ T +D+G
Sbjct: 63 TDRMDYLSAMTNNYVICHAVETMMGLEIPERAEYLRVLAMELGRIASHLVWWGTNLLDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++P L+ F ERE ++ G+R+ Y R GGV D P +E + + L
Sbjct: 123 AVSPFLYAFREREMIINLLNELCGARLTFNYMRVGGVKWDAPDGWIEKVEEFVPYMREQL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
DL++GN IF R +G E+A + SG +R +G WDLR +PY Y D
Sbjct: 183 AGYHDLVSGNEIFLNRVKGVGIYSAEEAISYSLSGANLRCTGVNWDLRMDEPYSIYDRFD 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDIP+G GD +DRY+ RM E+ ES+KI+ Q V + K G V A PKI+
Sbjct: 243 FDIPVGSVGDAWDRYVCRMKEIEESLKIVEQAVQQFP---KEGAVLAKVPKII------- 292
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE + +E+P+GE G Y+ SDG +PYR K R P + +
Sbjct: 293 ------------------KAPKGEAFVRIESPRGEIGCYIASDGKKEPYRLKFRRPSFYN 334
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L KG +A++ ILG +DIV GEVD
Sbjct: 335 LQILPKLLKGENIANLITILGGVDIVLGEVD 365
>gi|86158989|ref|YP_465774.1| NADH dehydrogenase (ubiquinone) [Anaeromyxobacter dehalogenans
2CP-C]
gi|85775500|gb|ABC82337.1| NADH dehydrogenase subunit D [Anaeromyxobacter dehalogenans 2CP-C]
Length = 389
Score = 360 bits (923), Expect = 3e-97, Method: Composition-based stats.
Identities = 171/390 (43%), Positives = 235/390 (60%), Gaps = 4/390 (1%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
S+ IN GP HPA HGV R ++EL+GEI+E + IG LHRG EK E T+ Q PY
Sbjct: 3 SKHMVINLGPSHPAMHGVTRAVVELNGEIIEEMKLDIGFLHRGFEKSCENVTWGQVFPYT 62
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DRL+YV+ + +ALAVEKL +EIP R + +RV+ SEI RI HL V AM++GA
Sbjct: 63 DRLNYVSSIMNNVGFALAVEKLAKLEIPERARYLRVITSEIHRICDHLTLVGAMAMELGA 122
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+T L+G E R+ L G+R+ + Y R GGV +D+P E D +
Sbjct: 123 MTVFLYGIEARDLLWDRLAELCGARLTSNYARIGGVARDMPEGWQEKTLKVLDRVVAIRE 182
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+I LL NRIF R +N G V EDA GF+G +R SG +D+RK+ PY Y LDF
Sbjct: 183 EIGQLLNRNRIFIDRCLNTGKVSREDALELGFTGPCLRASGEPYDIRKAAPYLVYDRLDF 242
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
DIP+G +GD +DRYL+RM EMR+S KIIRQC ++ G + D + P + +
Sbjct: 243 DIPVGSNGDNFDRYLMRMEEMRQSDKIIRQCFEQMA----PGEIIVQDFRYALPPKPLVY 298
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
++E ++ HFKL EG VP GEVY+ EA GE G Y++SDGG +PY+ +RAPG+ L
Sbjct: 299 GTIEGVMAHFKLVMEGIKVPAGEVYSYTEAANGELGFYVVSDGGGRPYKLGLRAPGWPML 358
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
A+ + KG L+D+ S++++ GEV+
Sbjct: 359 AALPVMTKGSLLSDLIPTFDSINMIGGEVE 388
>gi|229014465|ref|ZP_04171583.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus mycoides DSM 2048]
gi|228746815|gb|EEL96700.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus mycoides DSM 2048]
Length = 366
Score = 360 bits (923), Expect = 3e-97, Method: Composition-based stats.
Identities = 154/391 (39%), Positives = 220/391 (56%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RL++++DGEI++ P IG LHRGTEK+ E+ + Q +PY
Sbjct: 3 RTEEMLLNVGPQHPSTHGVFRLVIKIDGEIIKEATPVIGYLHRGTEKIAESLQYTQIIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY++ M + AVE ++ +EIP R + +RVL E+GR+ SHL+ T +D+G
Sbjct: 63 TDRMDYLSAMTNNYVLCHAVETMMDLEIPERAEYLRVLAMELGRVASHLVWWGTNLLDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++P L+ F ERE ++ G+R+ Y R GGV D P +E + + L
Sbjct: 123 AVSPFLYAFREREMIINLLSELCGARLTFNYMRVGGVKWDAPDGWIEKVKEFVPYMREQL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
DL++GN IF R +G E+A + SG +R +G WDLRK +PY Y D
Sbjct: 183 EGYHDLVSGNEIFLNRVKGVGVYSAEEAISYSLSGANLRCTGVHWDLRKDEPYSIYDRFD 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDIP+G GD +DRY+ RM E+ ES+KII Q + K G V A PKI+
Sbjct: 243 FDIPVGISGDAWDRYVCRMKEIEESLKIIEQAAEQFP---KDGAVLAKVPKII------- 292
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE + +E+P+GE G Y+ SDG +PYR K R P + +
Sbjct: 293 ------------------KAPKGEAFVRIESPRGEIGCYIASDGKKEPYRLKFRRPSFYN 334
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L KG +A++ ILG +DIV GEVD
Sbjct: 335 LQILPKLLKGENIANLITILGGVDIVLGEVD 365
>gi|295798103|emb|CAX68922.1| NADH-ubiquinone oxidoreductase, chain 49kDa,subunit I, D subunit
[uncultured bacterium]
Length = 449
Score = 360 bits (923), Expect = 3e-97, Method: Composition-based stats.
Identities = 165/438 (37%), Positives = 232/438 (52%), Gaps = 46/438 (10%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ + +N GP HPA HG++R++LELDGE V D IG LHR EK E +LQ +PY
Sbjct: 12 REETMMMNMGPSHPAMHGIIRIVLELDGERVVNSDVEIGYLHRCFEKSAEQSGYLQVIPY 71
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRL+YV+P+ Y LAVEKL GI++ R IRV+ SE+ R+ HL + AM++G
Sbjct: 72 TDRLNYVSPLINNVGYCLAVEKLFGIQVTERCAYIRVIMSELSRVCDHLTCIGANAMELG 131
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A T L+ + RE L E +G+R+ +Y RPGGV D+P E L
Sbjct: 132 AFTAFLYMMKAREFLWQAIEMVTGARLTISYVRPGGVKGDLPQGFEEITRKAIKETREVL 191
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ LLT NRIF R N+G + E A +G +G +RGSG +D+RK+ PY Y +LD
Sbjct: 192 KESHALLTKNRIFVDRLKNVGILTKEMALAYGITGPFLRGSGIDFDVRKNTPYLIYDKLD 251
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGP---------------- 288
FDIP+G GD YDRYL RM EM +S++I+ QC+ ++ N
Sbjct: 252 FDIPVGTIGDNYDRYLCRMEEMEQSLRIVEQCLAKMPKGNIQVDMQGREINAAQMVDDAK 311
Query: 289 ----------------------------VSASDPKIVPPKRADMKRSMESLIHHFKLYTE 320
V + + + P + D S+E L++HFKL +
Sbjct: 312 LGKTEGLIHMDVRPCPTLEGANGVQYDVVQTKERRAILPSKEDTYGSIEGLMNHFKLVMD 371
Query: 321 --GYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLA 378
G P GEVY AVE GE G Y+ISDG PYR ++R P + + A+ L G ++
Sbjct: 372 NFGIRPPKGEVYQAVEGGNGELGFYVISDGTGTPYRVRVRPPCFPIMAALSPLINGGLVS 431
Query: 379 DVSAILGSLDIVFGEVDR 396
D+ A GS++++ GE+DR
Sbjct: 432 DIVATFGSVNMIGGELDR 449
>gi|229136112|ref|ZP_04264866.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus BDRD-ST196]
gi|228647357|gb|EEL03438.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus BDRD-ST196]
Length = 366
Score = 360 bits (923), Expect = 3e-97, Method: Composition-based stats.
Identities = 154/391 (39%), Positives = 220/391 (56%), Gaps = 28/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RL++++DGEI++ P IG LHRGTEK+ E+ + Q +PY
Sbjct: 3 RTEEMLLNVGPQHPSTHGVFRLVIKIDGEIIKEATPVIGYLHRGTEKIAESLQYTQIIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY++ M + AVE ++ +EIP R + +RVL E+GR+ SHL+ T +D+G
Sbjct: 63 TDRMDYLSAMTNNYVLCHAVETMMDLEIPERAEYLRVLAMELGRVASHLVWWGTNLLDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++P L+ F ERE ++ G+R+ Y R GGV D P +E + + L
Sbjct: 123 AVSPFLYAFREREMIINLLSELCGARLTFNYMRVGGVKWDAPDGWIEKVKEFVPYMREQL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
DL++GN IF R +G E+A + SG +R +G WDLRK +PY Y D
Sbjct: 183 AGYHDLVSGNEIFLNRVRGVGVYSAEEAISYSLSGANLRCTGVHWDLRKDEPYSIYDRFD 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDIP+G GD +DRY+ RM E+ ES+KII Q + K G V A PKI+
Sbjct: 243 FDIPVGSTGDAWDRYVCRMEEIEESLKIIEQAAEQFP---KDGAVLAKVPKII------- 292
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE + +E+P+GE G Y+ SDG +PYR K R P + +
Sbjct: 293 ------------------KAPKGEAFVRIESPRGEIGCYIASDGKKEPYRLKFRRPSFYN 334
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L KG +A++ ILG +DIV GEVD
Sbjct: 335 LQILPKLLKGENIANLITILGGVDIVLGEVD 365
>gi|310820739|ref|YP_003953097.1| NADH dehydrogenase I subunit D [Stigmatella aurantiaca DW4/3-1]
gi|309393811|gb|ADO71270.1| NADH dehydrogenase I, D subunit [Stigmatella aurantiaca DW4/3-1]
Length = 415
Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats.
Identities = 159/391 (40%), Positives = 242/391 (61%), Gaps = 4/391 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+++ +N GP HPA HG +R+ +EL+GE + + DP IG LHRG +K E T+ Q +PY
Sbjct: 28 QTKRMYVNMGPSHPATHGTVRMRVELEGETILKADPEIGFLHRGFQKSCENVTWTQCLPY 87
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRL+YV+ + + AVEKL+G+EIP R Q IRV+ SE+ R+ HL V +++G
Sbjct: 88 TDRLNYVSALMNNFGFLNAVEKLIGLEIPERAQYIRVIGSELHRMQDHLTLVGATGLELG 147
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
P L E RE +M +G+R+ +Y R GG+++D+P +E + D L
Sbjct: 148 GFAPFLLVLEGRELIMDRVSELTGARLTTSYGRVGGLNRDLPEGWIEKVLKSLDKIQELL 207
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
++ LL NRIF R GT+ EDA +GF+G +R +G +D+RK++PY Y++LD
Sbjct: 208 VEVKGLLLRNRIFVDRMKGTGTINAEDALNFGFTGPCLRATGVDYDVRKAKPYWVYNQLD 267
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FD+PIG+HGD YDR+L+R+ E+ +S +IIRQ +L G GP+ D +I P + ++
Sbjct: 268 FDVPIGEHGDNYDRFLMRLEELHQSDRIIRQAFKQLPG----GPIIVDDWRIALPPKPEV 323
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
++E ++ HFKL EG VP GEVY A EA GE G YL+SDG +PY+ +RAPG+
Sbjct: 324 YGTIEGVMSHFKLVMEGIQVPPGEVYDATEASNGELGWYLVSDGRGRPYKVHVRAPGFPI 383
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
L ++ + +G LAD+ +++++ GEV+
Sbjct: 384 LSSVSHIIEGKMLADLIPTFDTINMIGGEVE 414
>gi|116515040|ref|YP_802669.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Buchnera
aphidicola str. Cc (Cinara cedri)]
gi|122285564|sp|Q057X3|NUOCD_BUCCC RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|116256894|gb|ABJ90576.1| NADH dehydrogenase I chain C [Buchnera aphidicola str. Cc (Cinara
cedri)]
Length = 578
Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats.
Identities = 146/396 (36%), Positives = 227/396 (57%), Gaps = 5/396 (1%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
D S +NFGP HP++HG R++L+L GE + P IG HRG EK+ E +T+
Sbjct: 187 DSNNSEYMFLNFGPNHPSSHGAFRIVLQLHGEKIINCIPDIGYHHRGAEKIAERQTWHSY 246
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+PY DR++Y+ E Y LAVEKL GI +P + Q+IR+L SE+ RI SHLL ++T
Sbjct: 247 IPYTDRIEYLGGCVNEMPYILAVEKLAGIVVPEKVQVIRILLSELFRINSHLLFLSTFIQ 306
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D+G+++ F +R+K+ E +G+RMH A+FR GGV +D+P + + P
Sbjct: 307 DIGSMSTVFLAFTDRQKIYDLIESITGARMHPAWFRIGGVAKDLPKNWNSLLKKFLIWMP 366
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
L+ ++ N+I R+ I ++A WG +G +R +G +D+RK++PY Y
Sbjct: 367 KRLDYYVNIAIKNKILISRSKGIAAYGKKEALSWGITGAGLRATGVNFDVRKNRPYSGYQ 426
Query: 242 ELDFDIPIGKH-GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
DF++PIG + D Y R L+++ E+R+S+KI+ QC+ + +G + P P K
Sbjct: 427 NFDFEVPIGNNISDAYTRVLLKIEEIRQSLKILNQCLLHM----PLGSYKSDHPLSTPQK 482
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ +E +I HF + G +P E + +EA KG YLISDG YR +IR P
Sbjct: 483 KNKSLFHIERMITHFLQMSWGPIIPSNESFQMIEATKGINSYYLISDGLTTSYRTRIRTP 542
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AHLQ + + +G+ ++D+ LGS+D V +VDR
Sbjct: 543 SFAHLQQIPSVIRGYVISDLIVYLGSIDFVMSDVDR 578
>gi|313903492|ref|ZP_07836883.1| NADH dehydrogenase subunit D [Thermaerobacter subterraneus DSM
13965]
gi|313466313|gb|EFR61836.1| NADH dehydrogenase subunit D [Thermaerobacter subterraneus DSM
13965]
Length = 391
Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats.
Identities = 168/395 (42%), Positives = 230/395 (58%), Gaps = 31/395 (7%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ ++ T++ GPQHP+ HGVLR++L LDGE V P IG LHR EK+ E T+ V
Sbjct: 27 EGGRQTMTMSMGPQHPSTHGVLRVVLSLDGETVVDAQPDIGYLHRNWEKIAEYMTYAMTV 86
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P+ DR DY+A + E A AVEKL G+E+P R Q++RV++SE+ RI SHLL T +D
Sbjct: 87 PFSDRNDYLAAITNELALVQAVEKLTGLEVPERAQILRVIFSELQRITSHLLWFGTFGLD 146
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP- 181
+GA+T L F RE +E+A+G+R AY R GG+ D+P +ED+ + D
Sbjct: 147 LGAVTAFLHAFTAREYCYKLFEQATGARFLYAYLRIGGLRNDVPDGWIEDLLSFLDQLEN 206
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+ LL N IF +R IG +K E A +G SG ++RGSG +D+RK+ Y Y
Sbjct: 207 KYWPEFMKLLIENPIFIRRTRGIGVLKPEVAVAYGASGPVLRGSGIKYDVRKADNYLPYD 266
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+FD+P+G++GD YDR LVRM E+ ES +IIRQ V L GPV A P+ + P
Sbjct: 267 RFEFDVPVGENGDVYDRALVRMYEILESARIIRQAVKELPD----GPVMAKVPRAIRPY- 321
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
GEVY VE P+GE GVYL++ G YR + R+P
Sbjct: 322 -------------------------GEVYHRVEGPRGEVGVYLVAAGDTNAYRARWRSPC 356
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +LQ + L +GH +ADV AI+GS+DIV GEVDR
Sbjct: 357 FVNLQLLPILARGHLVADVVAIIGSIDIVLGEVDR 391
>gi|13541944|ref|NP_111632.1| NADH dehydrogenase subunit D [Thermoplasma volcanium GSS1]
Length = 367
Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats.
Identities = 167/387 (43%), Positives = 231/387 (59%), Gaps = 25/387 (6%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+NFGPQHP+ HGVLRL ++LDGEIV+ V+P IG LHR EK+ E + + + YFDR+D
Sbjct: 6 EVNFGPQHPSMHGVLRLKVKLDGEIVKDVEPIIGYLHRNAEKICELQFYCDNMIYFDRMD 65
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
YVA MN E Y A EKLL +E P R + IRV+ E+ RI SHL+ + +D+G LTP
Sbjct: 66 YVAAMNMEIGYLEAAEKLLDVEPPGRAKWIRVMMGELNRIASHLVWLGAFGLDLGMLTPF 125
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ F+EREK++ + SGSR Y GGV+QD+ E ++ I + FP LN I++
Sbjct: 126 FYCFKEREKILKIFTEVSGSRQQLNYMSIGGVYQDVTDEALDHIKQFITEFPKELNMIAN 185
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
L N IF R +G + E A +G +G M+R SG +D+RK++PY Y +++FDIP+
Sbjct: 186 LFVKNDIFLSRTKGVGILSKEMAIDYGVTGPMLRASGVEYDVRKAEPYLVYDKVNFDIPV 245
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD R+LVR+ EMR+SVKII Q + +L GP K R
Sbjct: 246 SFKGDNLARFLVRIEEMRQSVKIIDQTIQKLPA----GPYFNQKAKKPLMIRLRG----- 296
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
GEVYA E+PKGEFGVY++ DG +PYR ++R+P + +L +
Sbjct: 297 ----------------QGEVYARTESPKGEFGVYIVGDGSLRPYRVRVRSPTFKNLSVLP 340
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVDR 396
L KG +AD+ +I GS+D+VFGEVDR
Sbjct: 341 ALAKGQMIADLISIGGSIDLVFGEVDR 367
>gi|255318318|ref|ZP_05359553.1| NADH dehydrogenase, D subunit [Acinetobacter radioresistens SK82]
gi|262379062|ref|ZP_06072218.1| NADH dehydrogenase (quinone), D subunit [Acinetobacter
radioresistens SH164]
gi|255304630|gb|EET83812.1| NADH dehydrogenase, D subunit [Acinetobacter radioresistens SK82]
gi|262298519|gb|EEY86432.1| NADH dehydrogenase (quinone), D subunit [Acinetobacter
radioresistens SH164]
Length = 595
Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats.
Identities = 142/393 (36%), Positives = 213/393 (54%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+N GP HP+AHG R+IL+LDGE ++ P IG HRG EK+ E +T+ +P
Sbjct: 207 ADEDFMFLNLGPNHPSAHGAFRVILQLDGEEIKDCVPDIGYHHRGAEKMGERQTWHSYIP 266
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ +Q Y +++E+L GI +P R Q IRV+ SE+ RI +HLL + T D
Sbjct: 267 YTDRVDYLGGCSQNMPYLMSIEQLAGITVPDRAQCIRVMMSELFRINNHLLYIGTAIQDA 326
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP + F +R+K+ E +G RMH A+FR GG D+P + I + P
Sbjct: 327 GGMTPVFYMFADRQKIYDAIEAITGFRMHPAWFRIGGTAHDLPNNWQKLIREILEWMPKR 386
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+N+ N +F R N+ + A WG +G +R +G +D+RK +PY Y
Sbjct: 387 MNEYYTAALRNSVFMGRTKNVAQYDAKAALAWGVTGTGLRATGIDFDVRKYRPYSGYENY 446
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DF++P+ GD Y R +V E+ E++KII+QC++ + G A P VPP +
Sbjct: 447 DFEVPVEYEGDAYARVMVHFHEINEALKIIKQCLDNM----PSGAYKADHPLAVPPPKDK 502
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ +E+LI HF + G +P GE E KG YL SD YR +IR P +
Sbjct: 503 TLKDIETLITHFLSVSWGPVMPAGESAVMAEVVKGASTYYLTSDKSTMSYRTRIRTPTFT 562
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ + + G ++D+ L ++D+V +VDR
Sbjct: 563 HLQQIPSVINGSLVSDLIIYLATIDVVMADVDR 595
>gi|86748474|ref|YP_484970.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Rhodopseudomonas palustris HaA2]
gi|123408618|sp|Q2J0F1|NUOCD_RHOP2 RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|86571502|gb|ABD06059.1| NADH dehydrogenase I, D subunit [Rhodopseudomonas palustris HaA2]
Length = 581
Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats.
Identities = 157/390 (40%), Positives = 225/390 (57%), Gaps = 4/390 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N+GP A HGV R++L LDGE + P IG HRG EK+ E +T+ +PY D
Sbjct: 196 ELMILNYGPHSMATHGVFRIVLALDGEEIVAARPDIGFHHRGAEKMAERQTWHNFLPYTD 255
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+DY+ + E Y AVEK GI +P R +RV+ SE+ RI++HLL T A D GA+
Sbjct: 256 RVDYLGGVMGEMPYLQAVEKACGITVPDRALTVRVMLSEMFRIMNHLLFYGTMAQDTGAM 315
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
+P + F +RE+ E +G+RMH YFR GG+ D+P + + D P+ L D
Sbjct: 316 SPVFYMFVDRERGYRVIEAITGARMHPGYFRIGGLSMDLPQGWDRLVREFLDWMPARLAD 375
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
++ N IF+ R + A WG +G +R +G+AWD+RK++PY + +F+
Sbjct: 376 YEGMVLRNEIFQARTKGVAAYDTAMALDWGVTGPGLRATGSAWDVRKARPYSGFENFEFE 435
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
IP+G +GDCYDR +VR+ E+R+S+KIIRQCV+ + GP+ A P PP R M
Sbjct: 436 IPVGHNGDCYDRTVVRVEEIRQSLKIIRQCVDNM----PSGPIKADHPLTTPPPRERMLH 491
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+E++IHHF + G +P GE VE +G LISDG YR +IR P + HLQ
Sbjct: 492 DIETMIHHFVGASWGPVLPPGETTGQVETVRGLTQFALISDGEPSSYRTRIRTPSFPHLQ 551
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + G +AD+ A LGS+D V +VDR
Sbjct: 552 MISAVAPGMMVADLVAYLGSIDYVMSDVDR 581
>gi|115378554|ref|ZP_01465709.1| NADH-ubiquinone oxidoreductase 49 kda subunit [Stigmatella
aurantiaca DW4/3-1]
gi|115364426|gb|EAU63506.1| NADH-ubiquinone oxidoreductase 49 kda subunit [Stigmatella
aurantiaca DW4/3-1]
Length = 425
Score = 359 bits (921), Expect = 6e-97, Method: Composition-based stats.
Identities = 159/391 (40%), Positives = 242/391 (61%), Gaps = 4/391 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+++ +N GP HPA HG +R+ +EL+GE + + DP IG LHRG +K E T+ Q +PY
Sbjct: 38 QTKRMYVNMGPSHPATHGTVRMRVELEGETILKADPEIGFLHRGFQKSCENVTWTQCLPY 97
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRL+YV+ + + AVEKL+G+EIP R Q IRV+ SE+ R+ HL V +++G
Sbjct: 98 TDRLNYVSALMNNFGFLNAVEKLIGLEIPERAQYIRVIGSELHRMQDHLTLVGATGLELG 157
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
P L E RE +M +G+R+ +Y R GG+++D+P +E + D L
Sbjct: 158 GFAPFLLVLEGRELIMDRVSELTGARLTTSYGRVGGLNRDLPEGWIEKVLKSLDKIQELL 217
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
++ LL NRIF R GT+ EDA +GF+G +R +G +D+RK++PY Y++LD
Sbjct: 218 VEVKGLLLRNRIFVDRMKGTGTINAEDALNFGFTGPCLRATGVDYDVRKAKPYWVYNQLD 277
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FD+PIG+HGD YDR+L+R+ E+ +S +IIRQ +L G GP+ D +I P + ++
Sbjct: 278 FDVPIGEHGDNYDRFLMRLEELHQSDRIIRQAFKQLPG----GPIIVDDWRIALPPKPEV 333
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
++E ++ HFKL EG VP GEVY A EA GE G YL+SDG +PY+ +RAPG+
Sbjct: 334 YGTIEGVMSHFKLVMEGIQVPPGEVYDATEASNGELGWYLVSDGRGRPYKVHVRAPGFPI 393
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
L ++ + +G LAD+ +++++ GEV+
Sbjct: 394 LSSVSHIIEGKMLADLIPTFDTINMIGGEVE 424
>gi|220916488|ref|YP_002491792.1| NADH dehydrogenase (quinone) [Anaeromyxobacter dehalogenans 2CP-1]
gi|219954342|gb|ACL64726.1| NADH dehydrogenase (quinone) [Anaeromyxobacter dehalogenans 2CP-1]
Length = 431
Score = 358 bits (920), Expect = 6e-97, Method: Composition-based stats.
Identities = 171/390 (43%), Positives = 235/390 (60%), Gaps = 4/390 (1%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
S+ IN GP HPA HGV R ++EL+GEI+E + IG LHRG EK E T+ Q PY
Sbjct: 45 SKHMVINLGPSHPAMHGVTRAVVELNGEIIEGMKLDIGFLHRGFEKSCENVTWGQVFPYT 104
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DRL+YV+ + +ALAVEKL +EIP R + +RV+ SEI RI HL V AM++GA
Sbjct: 105 DRLNYVSSIMNNVGFALAVEKLAKLEIPERARYLRVITSEIHRICDHLTLVGAMAMELGA 164
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+T L+G E R+ L G+R+ + Y R GGV +D+P E D +
Sbjct: 165 MTVFLYGIEARDLLWDRLAELCGARLTSNYARIGGVARDMPEGWQEKTLKVLDRVVAIRE 224
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+I LL NRIF R +N G V EDA GF+G +R SG +D+RK+ PY Y LDF
Sbjct: 225 EIGQLLNRNRIFIDRCLNTGKVSREDALELGFTGPCLRASGEPYDVRKAAPYLVYDRLDF 284
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
DIP+G +GD +DRYL+RM EMR+S KIIRQC ++ G + D + P + +
Sbjct: 285 DIPVGSNGDNFDRYLMRMEEMRQSDKIIRQCFEQMA----PGEIIVQDFRYALPPKPLVY 340
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
++E ++ HFKL EG VP GEVY+ EA GE G Y++SDGG +PY+ +RAPG+ L
Sbjct: 341 GTIEGVMAHFKLVMEGIKVPAGEVYSYTEAANGELGFYVVSDGGGRPYKLGLRAPGWPML 400
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
A+ + KG L+D+ S++++ GEV+
Sbjct: 401 AALPVMTKGSLLSDLIPTFDSINMIGGEVE 430
>gi|14325375|dbj|BAB60279.1| NADH dehydrogenase I chain D [Thermoplasma volcanium GSS1]
Length = 369
Score = 358 bits (920), Expect = 7e-97, Method: Composition-based stats.
Identities = 167/387 (43%), Positives = 231/387 (59%), Gaps = 25/387 (6%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+NFGPQHP+ HGVLRL ++LDGEIV+ V+P IG LHR EK+ E + + + YFDR+D
Sbjct: 8 EVNFGPQHPSMHGVLRLKVKLDGEIVKDVEPIIGYLHRNAEKICELQFYCDNMIYFDRMD 67
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
YVA MN E Y A EKLL +E P R + IRV+ E+ RI SHL+ + +D+G LTP
Sbjct: 68 YVAAMNMEIGYLEAAEKLLDVEPPGRAKWIRVMMGELNRIASHLVWLGAFGLDLGMLTPF 127
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ F+EREK++ + SGSR Y GGV+QD+ E ++ I + FP LN I++
Sbjct: 128 FYCFKEREKILKIFTEVSGSRQQLNYMSIGGVYQDVTDEALDHIKQFITEFPKELNMIAN 187
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
L N IF R +G + E A +G +G M+R SG +D+RK++PY Y +++FDIP+
Sbjct: 188 LFVKNDIFLSRTKGVGILSKEMAIDYGVTGPMLRASGVEYDVRKAEPYLVYDKVNFDIPV 247
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD R+LVR+ EMR+SVKII Q + +L GP K R
Sbjct: 248 SFKGDNLARFLVRIEEMRQSVKIIDQTIQKLPA----GPYFNQKAKKPLMIRLRG----- 298
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
GEVYA E+PKGEFGVY++ DG +PYR ++R+P + +L +
Sbjct: 299 ----------------QGEVYARTESPKGEFGVYIVGDGSLRPYRVRVRSPTFKNLSVLP 342
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVDR 396
L KG +AD+ +I GS+D+VFGEVDR
Sbjct: 343 ALAKGQMIADLISIGGSIDLVFGEVDR 369
>gi|295697424|ref|YP_003590662.1| NADH dehydrogenase I, D subunit [Bacillus tusciae DSM 2912]
gi|295413026|gb|ADG07518.1| NADH dehydrogenase I, D subunit [Bacillus tusciae DSM 2912]
Length = 367
Score = 358 bits (920), Expect = 7e-97, Method: Composition-based stats.
Identities = 154/392 (39%), Positives = 227/392 (57%), Gaps = 29/392 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RLI+++DGE + P IG LHRGTEKL E + Q +PY
Sbjct: 3 RTDELLLNVGPQHPSTHGVFRLIVKIDGETIIEATPVIGYLHRGTEKLAEDLMYTQIIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DYV+ M +AY AVE L+ IE+P R + +RV+ E+ RI SHL+ T +D+G
Sbjct: 63 TDRMDYVSAMLGNYAYVHAVETLMEIEVPERAEYLRVIAMELNRIASHLVWFGTYLLDLG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE-LVEDIGCWCDSFPSA 183
A+TP L+ F EREK++ SGSRM +Y R GGV D+P E + + + D+F A
Sbjct: 123 AITPFLYAFREREKILQLLAELSGSRMTYSYMRIGGVKWDVPDEGWLGRLDAFLDAFSGA 182
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L + DL+TGN I + R +G A +G +GV +R +G +D+R+++PY Y+
Sbjct: 183 LEEFHDLVTGNEIIQARLKGVGKYDAATAIAYGLTGVNLRSTGVNYDVRRAKPYSIYNRF 242
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
F +P + GD + RY +RM EM +S +I++Q V + G + A PK++
Sbjct: 243 AFHVPTREEGDLWARYCLRMEEMEQSRRIVKQAVAQFPSG---GDIVAKLPKVL------ 293
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
P GEVY +VE+ +GE GVY+ S+GG KPYR R P +
Sbjct: 294 -------------------RAPAGEVYTSVESTRGELGVYIRSEGGPKPYRVHFRRPSFV 334
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+LQ + L G +A++ AI+G +D++ GEVD
Sbjct: 335 NLQILPRLLVGEHIANMVAIIGGIDVIMGEVD 366
>gi|116747651|ref|YP_844338.1| NADH dehydrogenase (ubiquinone) [Syntrophobacter fumaroxidans MPOB]
gi|218534465|sp|A0LEQ1|NUOD_SYNFM RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|116696715|gb|ABK15903.1| NADH dehydrogenase (ubiquinone) [Syntrophobacter fumaroxidans MPOB]
Length = 373
Score = 358 bits (919), Expect = 8e-97, Method: Composition-based stats.
Identities = 156/390 (40%), Positives = 218/390 (55%), Gaps = 28/390 (7%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+ +T+N GPQHP+ HGVLR++L+LDGE + + DP IG HRG EK+ E + F Q +P
Sbjct: 12 QIYTLNLGPQHPSTHGVLRVLLDLDGEFIVKADPVIGYGHRGHEKMGENRLFKQFLPNTS 71
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDY++ H Y LAVEKL GI +P R Q IR + SE RI SHLL T MD+G
Sbjct: 72 RLDYLSGFLFNHGYVLAVEKLAGIPVPPRAQFIRTICSEFNRIASHLLWFGTYVMDLGGF 131
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP L+ F++RE+++ + +GSR+ +Y R GGV +DI + + S D
Sbjct: 132 TPFLYAFDDRERILDILDWVTGSRLTYSYCRFGGVDRDIDTRFTDMARDFIKRLRSRWPD 191
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+L+T N IF R +G + E A +G +G +R G A+D RK++PYE Y + DF+
Sbjct: 192 YHNLVTRNIIFIHRTRGVGVITPEQARQFGVTGPNLRACGIAFDTRKAEPYEVYDQFDFE 251
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
IP+G GD DRY VR EM +S++II Q ++RL G GP
Sbjct: 252 IPVGSDGDALDRYRVRFEEMEQSLRIIEQALDRLPG----GPFMNDSVPTRL-------- 299
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
P GEVY A E+ +G+ YL+SDG PYRC IR P + +L
Sbjct: 300 ----------------KPPKGEVYFAFESARGQAAYYLVSDGTPSPYRCHIRVPSFGNLH 343
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + +G +AD +ILGS+D+V E+DR
Sbjct: 344 VLTEVLRGTLVADAISILGSVDLVIPEIDR 373
>gi|197121692|ref|YP_002133643.1| NADH dehydrogenase (quinone) [Anaeromyxobacter sp. K]
gi|229891264|sp|B4UIA9|NUOD2_ANASK RecName: Full=NADH-quinone oxidoreductase subunit D 2; AltName:
Full=NADH dehydrogenase I subunit D 2; AltName:
Full=NDH-1 subunit D 2
gi|196171541|gb|ACG72514.1| NADH dehydrogenase (quinone) [Anaeromyxobacter sp. K]
Length = 431
Score = 358 bits (919), Expect = 9e-97, Method: Composition-based stats.
Identities = 172/390 (44%), Positives = 235/390 (60%), Gaps = 4/390 (1%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
S+ IN GP HPA HGV R ++EL+GEI+E + IG LHRG EK E T+ Q PY
Sbjct: 45 SKHMVINLGPSHPAMHGVTRAVVELNGEIIEGMKLDIGFLHRGFEKSCENVTWGQVFPYT 104
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DRL+YV+ + +ALAVEKL +EIP R + +RV+ SEI RI HL V AM++GA
Sbjct: 105 DRLNYVSSIMNNVGFALAVEKLAKLEIPERARYLRVITSEIHRICDHLTLVGAMAMELGA 164
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+T L+G E R+ L G+R+ + Y R GGV +DIP E D +
Sbjct: 165 MTVFLYGIEARDLLWDRLAELCGARLTSNYARIGGVARDIPEGWQEKTLKVLDRVVAIRE 224
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+I LL NRIF R +N G V EDA GF+G +R SG +D+RK+ PY Y LDF
Sbjct: 225 EIGQLLNRNRIFIDRCLNTGKVSREDALELGFTGPCLRASGEPYDVRKAAPYLVYDRLDF 284
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
DIP+G +GD +DRYL+RM EMR+S KIIRQC ++ G + D + P + +
Sbjct: 285 DIPVGSNGDNFDRYLMRMEEMRQSDKIIRQCFEQMA----PGEIIVQDFRYALPPKPLVY 340
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
++E ++ HFKL EG VP GEVY+ EA GE G Y++SDGG +PY+ +RAPG+ L
Sbjct: 341 GTIEGVMAHFKLVMEGIKVPAGEVYSYTEAANGELGFYVVSDGGGRPYKLGLRAPGWPML 400
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
A+ + KG L+D+ S++++ GEV+
Sbjct: 401 AALPVMTKGSLLSDLIPTFDSINMIGGEVE 430
>gi|16082573|ref|NP_394427.1| NADH dehydrogenase subunit D [Thermoplasma acidophilum DSM 1728]
Length = 367
Score = 358 bits (919), Expect = 9e-97, Method: Composition-based stats.
Identities = 170/387 (43%), Positives = 230/387 (59%), Gaps = 25/387 (6%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+NFGPQHP+ HGVLRL ++LDGEIV+ V+P IG LHR EK+ E + + + YFDR+D
Sbjct: 6 EVNFGPQHPSMHGVLRLRVKLDGEIVKEVEPIIGYLHRNAEKIGELQFYCDNMIYFDRMD 65
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
YVA MN E Y A EKLL IE+P R Q IRV+ +E+ RI SHL+ + +D+G LTP
Sbjct: 66 YVAAMNMEVGYLEAAEKLLDIEVPERAQWIRVMMAELNRIASHLVWLGAFGLDLGMLTPF 125
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ F+EREK++ + SGSR Y GGV+QD+ E ++ I + FP LN I
Sbjct: 126 FYCFKEREKILKIFTEVSGSRQQLNYMSIGGVYQDVTDEALDHIKTFIREFPKELNKIES 185
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
L N +F R IG + E A +G +G M+R SG +D+RK+QPY Y +++FDIP+
Sbjct: 186 LFVKNDVFISRTKGIGILSKEMAIDYGVTGPMLRASGVEYDVRKAQPYLVYDKVNFDIPV 245
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD R+LVR+ EMR+SVKI+ Q + +L GP K R
Sbjct: 246 SFKGDNLARFLVRVEEMRQSVKIVEQTIQKLPA----GPYFNQKAKKPLMIRLRG----- 296
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
GEVYA E+PKGEFGVYLI DG +PYR ++R+P + +L +
Sbjct: 297 ----------------QGEVYARTESPKGEFGVYLIGDGSLRPYRVRVRSPTFKNLSVLP 340
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVDR 396
L K +AD+ +I GS+D+VFGEVDR
Sbjct: 341 ALAKDQMIADLISIGGSIDLVFGEVDR 367
>gi|325954437|ref|YP_004238097.1| NAD(P)H-quinone oxidoreductase subunit H [Weeksella virosa DSM
16922]
gi|323437055|gb|ADX67519.1| NAD(P)H-quinone oxidoreductase subunit H [Weeksella virosa DSM
16922]
Length = 413
Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats.
Identities = 149/393 (37%), Positives = 216/393 (54%), Gaps = 2/393 (0%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ ++ T+N GP HPA HGV + ILE+DGEIV+ P +G +HR EK+ E + Q P
Sbjct: 20 EKKTVTLNLGPTHPATHGVFQNILEMDGEIVKSAIPTVGYIHRAFEKIAERRPLYQITPL 79
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRL+Y + + + VEK +GIE+P R +R++ E+ RI H++ + +D G
Sbjct: 80 TDRLNYCSAPLNNLGWHMTVEKFMGIEVPKRTSYLRIIIMELARIADHIVCNSIMGVDTG 139
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A T L+ RE + YE GSR+ R GG +D P+ I + FP L
Sbjct: 140 AFTGFLYMLRYRELIYEIYEEICGSRLTTNIGRIGGFERDFTPDAWSKIHRFVKEFPDVL 199
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ +L NRIF R IG + E A +GF+G +R +G +D+R ++PY Y E
Sbjct: 200 TEFENLFVRNRIFMDRTQGIGGISAERALSYGFTGPNLRAAGVDYDIRVAKPYSRYEEFT 259
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRL--LGKNKVGPVSASDPKIVPPKRA 302
FDIP+G GDCYDR+ VR EM +S+ IIRQ + ++ L + A P P +
Sbjct: 260 FDIPVGTTGDCYDRFQVRTQEMWQSLSIIRQALEKIDALEGEEATLYHADAPDFYLPLKK 319
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
D+ ME+LI+HFK+ +P GE+Y ++E GE G YLISDGG PYR R P +
Sbjct: 320 DVYTKMEALIYHFKIIMGELEIPEGEIYNSIEGANGELGYYLISDGGRSPYRLHFRRPCF 379
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ QA L G L+D + SL+++ GE+D
Sbjct: 380 IYYQAYPELIVGSMLSDAIITMSSLNLIAGELD 412
>gi|320354160|ref|YP_004195499.1| NADH dehydrogenase subunit D; NADH dehydrogenase subunit C
[Desulfobulbus propionicus DSM 2032]
gi|320122662|gb|ADW18208.1| NADH dehydrogenase subunit D; NADH dehydrogenase subunit C
[Desulfobulbus propionicus DSM 2032]
Length = 571
Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats.
Identities = 144/396 (36%), Positives = 218/396 (55%), Gaps = 4/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M+ + +N GP HPA HG +R++ LDGE + IG LHRG EK E +T+ Q
Sbjct: 180 MEDIHTEIMYLNLGPSHPATHGAIRILTALDGETILANVNEIGYLHRGFEKTAENRTYNQ 239
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+P DRL+Y + + AYA AVE LGI+I R + +RV+ +E R+ HL+ +
Sbjct: 240 VIPLTDRLNYCSALMNNIAYAKAVESWLGIDITERAKFMRVILAEFFRVQDHLVCIAANL 299
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+D+G LT + + E+E F R +G+R+ +++ R GG+++D D+
Sbjct: 300 VDMGGLTNYWYLYNEKEASYDFISRLTGARLTSSFTRIGGMYRDFYEGWEADMEKQLCDI 359
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ND L+ NRI R N+ + + A +GF+G +R SG +DLRK PY Y
Sbjct: 360 EKGVNDSLKLVLKNRIVHDRTQNVCVMPADKALSYGFTGPCLRASGVPFDLRKDNPYYHY 419
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
DF IP+G GD YDR ++R E+ +S+ IIRQ + + G V+ S+ + P
Sbjct: 420 DAFDFTIPLGSKGDIYDRIMIRYEEIFQSISIIRQAMKMIPA----GSVNISNNNVFLPP 475
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ ++ ++E L HFKL EG P GE Y + EA GE G Y +SDG KPY+CK+R P
Sbjct: 476 KTEVYSNIEGLASHFKLVFEGVKAPAGEWYDSFEAANGELGFYFVSDGSGKPYKCKVRPP 535
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + + +G +AD LGS++I+ GE+DR
Sbjct: 536 CFYMMGGFHEMVEGEMIADAVINLGSINIIGGELDR 571
>gi|284039945|ref|YP_003389875.1| NADH dehydrogenase (quinone) [Spirosoma linguale DSM 74]
gi|283819238|gb|ADB41076.1| NADH dehydrogenase (quinone) [Spirosoma linguale DSM 74]
Length = 410
Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats.
Identities = 151/389 (38%), Positives = 225/389 (57%), Gaps = 4/389 (1%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
T+N GP HPA HG+ + +L++DGE + + IG +HR EK+ E + F Q D
Sbjct: 25 ELTTLNLGPTHPATHGIFQNVLQMDGEKIVSGEQTIGYIHRAFEKIAERRPFYQITTLTD 84
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R++Y + + + VEKLLG+E+P R Q IRV+ E+ R+ HL+ +D GA
Sbjct: 85 RMNYCSSPINNMGWHMTVEKLLGVEVPKRAQYIRVIMMELARLADHLICNGILGVDTGAF 144
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
T L+ ++ERE + YE G+R+ R GG+ +D+ P + I FP L +
Sbjct: 145 TGFLYIYQEREHIYEIYEEVCGARLTTNMGRIGGMERDLSPTAIRKIKELLVRFPKVLRE 204
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+L NRIF R VN+G + E A +GF+G +R +G +D+R PY Y + +FD
Sbjct: 205 FENLFNRNRIFMDRVVNVGGISAERALSYGFTGPNLRAAGVDYDVRVMNPYSSYQDFEFD 264
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
IP+G+ GD YDR++VR EM +S++II+Q ++ L GP A P+ P + ++ +
Sbjct: 265 IPVGQSGDTYDRFMVRNEEMWQSLRIIQQAIDNL----PQGPFFADAPQYYLPPKQEVYK 320
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+ME+LI+HFK+ PVGEVY AVE GE G YLISDGG PYR R P + + Q
Sbjct: 321 NMEALIYHFKIVMGEIEAPVGEVYHAVEGGNGELGFYLISDGGRTPYRLHFRRPCFIYYQ 380
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVD 395
A +CKG L+D I+ S++++ GE+D
Sbjct: 381 AYPEMCKGLTLSDAIVIMSSMNVIAGELD 409
>gi|10640282|emb|CAC12096.1| probable NADH dehydrogenase, chain D [Thermoplasma acidophilum]
Length = 369
Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats.
Identities = 170/387 (43%), Positives = 230/387 (59%), Gaps = 25/387 (6%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+NFGPQHP+ HGVLRL ++LDGEIV+ V+P IG LHR EK+ E + + + YFDR+D
Sbjct: 8 EVNFGPQHPSMHGVLRLRVKLDGEIVKEVEPIIGYLHRNAEKIGELQFYCDNMIYFDRMD 67
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
YVA MN E Y A EKLL IE+P R Q IRV+ +E+ RI SHL+ + +D+G LTP
Sbjct: 68 YVAAMNMEVGYLEAAEKLLDIEVPERAQWIRVMMAELNRIASHLVWLGAFGLDLGMLTPF 127
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ F+EREK++ + SGSR Y GGV+QD+ E ++ I + FP LN I
Sbjct: 128 FYCFKEREKILKIFTEVSGSRQQLNYMSIGGVYQDVTDEALDHIKTFIREFPKELNKIES 187
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
L N +F R IG + E A +G +G M+R SG +D+RK+QPY Y +++FDIP+
Sbjct: 188 LFVKNDVFISRTKGIGILSKEMAIDYGVTGPMLRASGVEYDVRKAQPYLVYDKVNFDIPV 247
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD R+LVR+ EMR+SVKI+ Q + +L GP K R
Sbjct: 248 SFKGDNLARFLVRVEEMRQSVKIVEQTIQKLPA----GPYFNQKAKKPLMIRLRG----- 298
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
GEVYA E+PKGEFGVYLI DG +PYR ++R+P + +L +
Sbjct: 299 ----------------QGEVYARTESPKGEFGVYLIGDGSLRPYRVRVRSPTFKNLSVLP 342
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVDR 396
L K +AD+ +I GS+D+VFGEVDR
Sbjct: 343 ALAKDQMIADLISIGGSIDLVFGEVDR 369
>gi|58042475|gb|AAW63677.1| NADH dehydrogenase subunit 7 [Piper betle]
Length = 363
Score = 357 bits (917), Expect = 2e-96, Method: Composition-based stats.
Identities = 213/367 (58%), Positives = 266/367 (72%), Gaps = 4/367 (1%)
Query: 19 AAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
AAHGV R +LE++GE+VER +PHIG LHRGTEKLIE KTFLQA+PY DR DYV+ M QEH
Sbjct: 1 AAHGVSRSVLEMNGEVVERAEPHIGSLHRGTEKLIEYKTFLQALPYSDRSDYVSMMAQEH 60
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREK 138
A++ AVE LL E+P+R Q IRVL+ EI RI +H L TT AMDVGA TP LW FEEREK
Sbjct: 61 AHSSAVETLLNCEVPLRAQYIRVLFREITRISNHSLASTTHAMDVGASTPFLWAFEEREK 120
Query: 139 LMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFK 198
L+ F+ER SG+RMHA++ RPGGV QD+P DI F S +++ ++ T NRI+K
Sbjct: 121 LLEFHERVSGARMHASFIRPGGVAQDLPLGSCRDIDSSTQQFASRIDESEEMSTSNRIWK 180
Query: 199 QRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDR 258
QR V+IGTV + A WGFSGVM+RG G WDLR++ PY+ + + D D+P+G GD YDR
Sbjct: 181 QRLVDIGTVTAQQAKDWGFSGVMLRGRGVCWDLRRAAPYDVHDQSDPDVPVGTRGDRYDR 240
Query: 259 YLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLY 318
Y +R+ EMR+SV+II QC N++ G + A D K+ PP R MK SMES IHHF+ Y
Sbjct: 241 YCIRIEEMRQSVRIIVQCPNQM----PSGMIKADDRKLCPPSRCRMKLSMESSIHHFEPY 296
Query: 319 TEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLA 378
TEG+ VP Y AVEAPKGEFGV+L+S+G N+PYR KIRAPG AHLQ ++ + K H A
Sbjct: 297 TEGFSVPAPSTYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPA 356
Query: 379 DVSAILG 385
DV I+G
Sbjct: 357 DVVTIIG 363
>gi|317121159|ref|YP_004101162.1| NADH dehydrogenase subunit D [Thermaerobacter marianensis DSM
12885]
gi|315591139|gb|ADU50435.1| NADH dehydrogenase subunit D [Thermaerobacter marianensis DSM
12885]
Length = 391
Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats.
Identities = 172/391 (43%), Positives = 228/391 (58%), Gaps = 31/391 (7%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
++ T++ GPQHP+ HGVLR++L LDGE V P IG LHR EK+ E T+ VP+ D
Sbjct: 31 QTMTMSMGPQHPSTHGVLRVVLTLDGETVVDAQPDIGYLHRNWEKIAEYMTYAMTVPFSD 90
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R DY+A + E A AVEKL GIE+P R Q++R+++SE+ RI SHLL T +D+GA+
Sbjct: 91 RNDYLAAITNELALVQAVEKLTGIEVPERAQILRIIFSELQRITSHLLWFGTFGLDLGAV 150
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS-ALN 185
T L F RE +ERA+G+R Y R GG+ D+P VED+ + D
Sbjct: 151 TAFLHAFTAREYCYRLFERATGARFLYGYLRIGGMRNDVPDGWVEDLLSFVDQLERTYWP 210
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ LL N IF +R IG +K E A +G SG ++RGSG +D+RK+ Y Y +F
Sbjct: 211 EFMRLLIDNAIFIRRTKGIGVLKPEVAVAYGASGPVLRGSGVKYDVRKADNYLPYDRFEF 270
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
DIP+G++GD YDR +VRM EM ES KIIRQ V L GPV A P+ + P
Sbjct: 271 DIPVGENGDVYDRAVVRMYEMLESAKIIRQAVKELPD----GPVMAKVPRAIRPY----- 321
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
GEVY VE P+GE GVYL++ G YR + R+P + HL
Sbjct: 322 ---------------------GEVYHRVEGPRGEVGVYLVAAGDTNAYRARWRSPCFVHL 360
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Q + L +GH +ADV AI+GS+DIV GEVDR
Sbjct: 361 QLLPLLARGHLVADVVAIIGSIDIVLGEVDR 391
>gi|298674248|ref|YP_003725998.1| NADH dehydrogenase [Methanohalobium evestigatum Z-7303]
gi|298287236|gb|ADI73202.1| NADH dehydrogenase (quinone) [Methanohalobium evestigatum Z-7303]
Length = 377
Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats.
Identities = 139/397 (35%), Positives = 219/397 (55%), Gaps = 24/397 (6%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+++ +S I+ GPQHPA G RL L++ GE V +G +H+G EK++E+KT+LQ
Sbjct: 4 LEELESTEMLIHIGPQHPAQPGPFRLNLKVKGETVTDAQVELGFIHKGIEKILESKTYLQ 63
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+P DR+ Y+ ++ E A+ VE+L GIE+P R Q IRV+ E+ RI SHLL +
Sbjct: 64 GIPIVDRMCYLGALSNEEAFCGCVEQLAGIEVPERAQYIRVITEELSRIQSHLLGFGEFS 123
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+G + ++ +ERE ++ + +G+R+ + + GGV +D+PP + +
Sbjct: 124 EFIGYQSMFMYTIKERENVLSLLDSITGARITHTFLKFGGVREDLPPGFKDKFTRTMEQL 183
Query: 181 PSA-LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
S L++ LL + I+K R V +G + E A G +G ++R +G +D+RK +PY
Sbjct: 184 KSTVLDEYERLLKSDTIYKDRTVGVGVLSPEVAKEVGVAGPVLRATGVPFDIRKDEPYLV 243
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y +LDF + K GD Y R +VR+ E+RES+ II Q ++++ + +
Sbjct: 244 YDDLDFKVCTQKEGDSYARIMVRLNEIRESIYIIEQALDQIPDGPIFPENTPYGKR---- 299
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
T VP GEV+ VE P+GE G+Y++SDG +KPYR K+R
Sbjct: 300 -------------------TPTMRVPEGEVFNRVENPRGEMGIYMVSDGSDKPYRVKVRG 340
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
P Y LQA+ + +G +ADV+ I GS+D EVDR
Sbjct: 341 PAYPTLQALPPVLRGVYVADVNTIAGSMDGCTSEVDR 377
>gi|332830191|gb|EGK02819.1| NADH-quinone oxidoreductase subunit D [Dysgonomonas gadei ATCC
BAA-286]
Length = 411
Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats.
Identities = 146/386 (37%), Positives = 214/386 (55%), Gaps = 4/386 (1%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+NFGP HP+ HGV + IL +DGE + D IG +HR EK+ E +TF Q DRL+
Sbjct: 29 ILNFGPTHPSTHGVFQNILLMDGERILDADTTIGYIHRAFEKIAERRTFYQITTLTDRLN 88
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
Y + A+ + VEK LG+E+P R Q +RV+ E+ RI HL+ + +D+GA TP
Sbjct: 89 YCSSPINNMAWWMTVEKALGVEVPKRAQYMRVIVMELARITDHLICNSILGVDLGAYTPF 148
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
L+ + RE YE G+R+ R GG +D + + + FP A +
Sbjct: 149 LYVMKYRELAYEIYEEICGARLTTNMGRIGGFERDWSEAAWRKLDEFLEGFPKAWGQLEA 208
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
L NRIF R V +G + E A +GF+G +R +G +D+R ++PY Y + DF +P+
Sbjct: 209 LFVRNRIFMDRIVGVGAISAEKAMNYGFTGPNLRATGIDYDVRVAKPYSSYEDFDFTVPV 268
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
G+ GD YDR+ VR E++ES+KIIRQ + + G A P P + ++ ME
Sbjct: 269 GESGDTYDRWCVRAAEIKESLKIIRQARDNM----PEGSYHADVPDYYLPPKEEVYTEME 324
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
+LI HFK+ VPV EVY +VE GE GVY+++DG PYR R P + + QA
Sbjct: 325 ALIQHFKIVMGEVPVPVTEVYHSVEGANGELGVYIVTDGSRVPYRVHFRRPCFIYYQAFP 384
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
+ KG +D A L S++++ GE+D
Sbjct: 385 EMIKGGLFSDAVATLSSINVIAGELD 410
>gi|313223128|emb|CBY43377.1| unnamed protein product [Oikopleura dioica]
Length = 349
Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats.
Identities = 196/352 (55%), Positives = 259/352 (73%), Gaps = 4/352 (1%)
Query: 45 LHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYS 104
LHRGTEKLIE KT+ QA+PYFDRLDY + M E ++LAVEKL I++P+R + IR +++
Sbjct: 2 LHRGTEKLIEYKTYNQALPYFDRLDYCSMMINEQCFSLAVEKLCNIDVPLRAKYIRTMFA 61
Query: 105 EIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQD 164
EI RIL+H + V A+D+GA+TP W FEEREKL FYER G+RMHAAY RPGGV+ D
Sbjct: 62 EITRILNHTVFVGCGALDLGAMTPFFWLFEEREKLYEFYERVCGARMHAAYIRPGGVNLD 121
Query: 165 IPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRG 224
+P L +DI W F S L+++ ++LT NR+++ RNV++G V + A WG SG M+RG
Sbjct: 122 LPIGLCDDIYDWAKRFSSRLDEVEEMLTENRVWRARNVDVGIVSYDSAQEWGMSGCMLRG 181
Query: 225 SGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKN 284
SG WD+RK PY+ Y ++FD+PIG GDC+DRYL RM EMRES++II QC+N++
Sbjct: 182 SGIKWDIRKVAPYDAYDLVEFDVPIGTRGDCFDRYLCRMEEMRESIRIIHQCLNQM---- 237
Query: 285 KVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
G + A D K PP R MK ME++IHHFK +TEGY VP G Y AVEAPKGEFGVYL
Sbjct: 238 PEGDIKADDRKFTPPNRLSMKNDMEAVIHHFKFWTEGYQVPPGATYTAVEAPKGEFGVYL 297
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+SDG ++PYRCKI+APG+AHL A++ + G+ L D+ I+G++D+VFGE+DR
Sbjct: 298 VSDGTSRPYRCKIKAPGFAHLGAIDHVATGNNLPDICGIVGTMDLVFGEIDR 349
>gi|297569882|ref|YP_003691226.1| NADH dehydrogenase (quinone) [Desulfurivibrio alkaliphilus AHT2]
gi|296925797|gb|ADH86607.1| NADH dehydrogenase (quinone) [Desulfurivibrio alkaliphilus AHT2]
Length = 372
Score = 355 bits (911), Expect = 9e-96, Method: Composition-based stats.
Identities = 146/390 (37%), Positives = 218/390 (55%), Gaps = 28/390 (7%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+F +N GPQHPA HG LR+ L +DGE + +P +G +HR EK+ E +T+ Q +P
Sbjct: 11 ETFVLNMGPQHPATHGALRVKLLMDGEFIVEAEPVLGYIHRMHEKMGENRTYHQFLPNPS 70
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDY++ M H Y AVE+ GI +P R + +RV+ E+ R+ SHLL + +D+G
Sbjct: 71 RLDYLSAMAYNHGYVAAVERAAGIAVPERAEYLRVITVELNRVSSHLLWLGAFVLDLGGF 130
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP L+ ++RE+++ ER +GSR+ YFR GG++ D+ + AL
Sbjct: 131 TPLLYTMDDREQILDLLERVTGSRLTYCYFRFGGLYNDVDDQFEAGARAVVKRIREALPM 190
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+L+T N I +QR IG V E +G +G + RGSG +D+RK +PY Y E DFD
Sbjct: 191 YHNLITKNIILRQRLEGIGVVTGEMCRKYGATGPVARGSGIPYDVRKHEPYSVYPEFDFD 250
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
IP+ + GD RYLVRM E+ +S++I+ Q +++L ++ PKI+
Sbjct: 251 IPVYEQGDSMARYLVRMDEIEQSLRIVEQGLDKLPDGPV---MAEKVPKII--------- 298
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
P G+ Y AVEA +G FGV L+SDG N PYR K+R+P ++++
Sbjct: 299 ----------------KPPKGDYYHAVEAARGSFGVRLVSDGSNTPYRLKLRSPCFSNVS 342
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+G LAD A+ GSLD+V ++DR
Sbjct: 343 LFGEAARGLLLADAVALFGSLDLVIPDIDR 372
>gi|326799003|ref|YP_004316822.1| NAD(P)H-quinone oxidoreductase subunit H [Sphingobacterium sp. 21]
gi|326549767|gb|ADZ78152.1| NAD(P)H-quinone oxidoreductase subunit H [Sphingobacterium sp. 21]
Length = 411
Score = 355 bits (910), Expect = 9e-96, Method: Composition-based stats.
Identities = 145/394 (36%), Positives = 216/394 (54%), Gaps = 1/394 (0%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ + T+N GP HPA HGV + +L++DGE + IG +HR EK+ E + + Q
Sbjct: 18 NDPQDDLVTLNLGPTHPATHGVFQNVLQVDGERIVSGVSTIGYIHRAFEKIAEHRPYYQI 77
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
P DRL+Y + + + VEKLLGIEIP R Q +RV+ E+ RI H++ +
Sbjct: 78 TPLTDRLNYCSSPINNMGWHMTVEKLLGIEIPKRVQYMRVIIMELARIADHIICNGILGV 137
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D GA + L+ +ERE + +E G+R+ R GG +D I + +P
Sbjct: 138 DTGAFSGFLYVMQEREFIYEIFEEICGARLTTNIGRIGGFERDFNEIAFSKIRQFVKRYP 197
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
L + +L NRIF R + V E A + +SG ++R +G +D+R ++PY Y
Sbjct: 198 PVLTEFEELFNRNRIFIDRTSGVAAVDPETALSYSWSGPLLRATGIDYDVRANEPYSSYD 257
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
E DFDIP+G++GD YDRY+VR EMR+S++II Q ++++ K G A P+ P +
Sbjct: 258 EFDFDIPVGENGDVYDRYMVRNEEMRQSIRIIEQALDKI-EKEPKGIFHADVPEFYLPPK 316
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +ME+LI+HFK+ P EVY AVE GE G YLISDGG PYR R P
Sbjct: 317 EQVYNNMEALIYHFKIVMGEIDTPKTEVYHAVEGANGELGFYLISDGGRSPYRLHFRRPS 376
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ + Q + G L+D + SL+++ GE+D
Sbjct: 377 FINYQMYAPMSSGMLLSDAIINMSSLNVIAGELD 410
>gi|51245170|ref|YP_065054.1| NADH dehydrogenase, subunit 7 [Desulfotalea psychrophila LSv54]
gi|81642425|sp|Q6ANM7|NUOD_DESPS RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|50876207|emb|CAG36047.1| probable NADH dehydrogenase, subunit 7 [Desulfotalea psychrophila
LSv54]
Length = 372
Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats.
Identities = 148/391 (37%), Positives = 227/391 (58%), Gaps = 28/391 (7%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+FT+N GPQHPA HGVLR+ L +DGE + + IG +HR EK+ E +T+ Q +P
Sbjct: 10 DETFTLNLGPQHPATHGVLRVKLTMDGEYIYSAETVIGYIHRMHEKMGENRTYNQYLPNL 69
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
RLDY++ M H Y LAVEK IE+P R + IR + E+ R+ SHL+ MD+G
Sbjct: 70 SRLDYLSAMAYCHGYVLAVEKAGSIEVPERAEYIRAITVELNRLSSHLVWFGAFIMDLGG 129
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+P ++ F++RE+++ E +GSR+ Y+R GG++ DI E + + +L
Sbjct: 130 FSPLMYAFDDREQILDLLESITGSRLTYCYYRFGGLYNDIDDEFLVGTRKFIIRMRKSLK 189
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
DL+T N I +R +IG + E +G +G + RGSG +D+RK++PY Y+E DF
Sbjct: 190 TYRDLVTNNIILMKRLKDIGHISPEICRKYGATGPVARGSGINFDVRKNEPYSVYNEFDF 249
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
DIP+ GD Y RY+VRM EM +S++II Q +++L G I+P K+ +
Sbjct: 250 DIPVYHEGDSYARYMVRMDEMEQSLRIIEQAMDKLPGGP-----------IIPEKKPKI- 297
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
+P G+ Y+ VEA +G FG+ L+SDGG YR K+R+P ++++
Sbjct: 298 ----------------IKLPEGDYYSTVEAARGSFGIRLVSDGGKNAYRLKLRSPTFSNM 341
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +C+G +AD A++GSLD+V E+DR
Sbjct: 342 HLFDEVCQGMLIADALALMGSLDLVIPEIDR 372
>gi|118579070|ref|YP_900320.1| NADH dehydrogenase (ubiquinone) [Pelobacter propionicus DSM 2379]
gi|118580049|ref|YP_901299.1| NADH dehydrogenase (ubiquinone) [Pelobacter propionicus DSM 2379]
gi|118581591|ref|YP_902841.1| NADH dehydrogenase (ubiquinone) [Pelobacter propionicus DSM 2379]
gi|229891293|sp|A1ALP2|NUOD_PELPD RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|118501780|gb|ABK98262.1| NADH dehydrogenase subunit D [Pelobacter propionicus DSM 2379]
gi|118502759|gb|ABK99241.1| NADH dehydrogenase subunit D [Pelobacter propionicus DSM 2379]
gi|118504301|gb|ABL00784.1| NADH dehydrogenase subunit D [Pelobacter propionicus DSM 2379]
Length = 403
Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats.
Identities = 157/395 (39%), Positives = 232/395 (58%), Gaps = 4/395 (1%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+N GP HPA HG +++I LDGE V + D H G LHRG EK E T+ +
Sbjct: 13 QTADPNHVLVNMGPSHPATHGTIQIIAALDGERVAKADIHCGYLHRGFEKESEHHTYHKI 72
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+P+ DRL+Y + +N AY VEKLLGIE+ R +R L +E R+ H+ V M
Sbjct: 73 IPFTDRLNYCSALNNNFAYVEGVEKLLGIELTPRCIYLRTLLAEYNRVADHVTCVAATVM 132
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
++GA+T L+ R+ + + +G+R+ ++ R GG+ D+P +E +
Sbjct: 133 EMGAMTAFLYLMTIRDYIFEHLNQLTGARLTYSFARVGGLKNDLPDGWLERLEEILQFTE 192
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
I LL NRIF R ++G + E A WG++G ++R +GA D+RK PY Y+
Sbjct: 193 KYCGRIHGLLDRNRIFIDRTRDVGAMSPEHALNWGYTGPILRSTGAKIDIRKDNPYLAYA 252
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+LDF++P+G GD YDRY VRM E+ ES+ ++RQC+ +L GPV+ D +I+ P +
Sbjct: 253 DLDFEVPVGIKGDNYDRYYVRMREIDESISMVRQCMKKLPD----GPVNIDDRRIMYPTK 308
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E LI HFKL +G VP GE+Y + EAP GE G YLISDG +PY+ +R+P
Sbjct: 309 DKVYTKIEYLISHFKLVIDGIQVPAGEIYVSHEAPNGELGFYLISDGSGRPYKLHVRSPS 368
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AH+ M L +G+Q+ADV A GS++++ GE DR
Sbjct: 369 FAHMGGMHTLLEGYQVADVIATFGSMNMIGGECDR 403
>gi|167463144|ref|ZP_02328233.1| NADH dehydrogenase I, D subunit [Paenibacillus larvae subsp. larvae
BRL-230010]
Length = 365
Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats.
Identities = 145/391 (37%), Positives = 225/391 (57%), Gaps = 29/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N G QHP+ HGV R+I++LD EI++ P +G LHRGTEKL E T+ Q +PY
Sbjct: 3 RTEELLLNVGSQHPSTHGVFRIIVKLDSEIIKDAIPVMGYLHRGTEKLAENLTYTQVIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DYV+ M + VE+++ IEIP R + +RV+ E+ R+ SH++ T +D+G
Sbjct: 63 TDRMDYVSAMTNNYVLVHTVEQMMQIEIPERAEYLRVIVMELQRVASHMVWWGTYLLDIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++P L+ F +RE ++ + G+R+ Y R GGV D P ++ + + L
Sbjct: 123 AMSPFLYAFRDREIIINLFNELCGARLTYNYMRIGGVKWDAPDGWIQKVKDFIPYMYGKL 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ L++GN IF R N+G EDA +G SG +R +G WDLRK++PY Y +
Sbjct: 183 EEYDRLVSGNEIFLARIKNVGAYNAEDAIAYGLSGSNLRCTGVKWDLRKNKPYSIYDRFE 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FD+P+GK+GDCYDRYL+R+ E+R+S++I+ Q ++ G + P+++
Sbjct: 243 FDVPVGKNGDCYDRYLIRLEEIRQSLRILEQATRQI----PEGEIMGKAPRVI------- 291
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE+Y ++EAP+GE G Y++S G +PYR K R P + +
Sbjct: 292 ------------------KPPEGEMYCSIEAPRGEIGCYIVSRGKPEPYRLKFRRPSFVN 333
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L G + ++ ILG +DIV GEVD
Sbjct: 334 LQILPKLLIGETMTNLITILGGIDIVVGEVD 364
>gi|322383095|ref|ZP_08056922.1| hypothetical protein PL1_1944 [Paenibacillus larvae subsp. larvae
B-3650]
gi|321152757|gb|EFX45383.1| hypothetical protein PL1_1944 [Paenibacillus larvae subsp. larvae
B-3650]
Length = 364
Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats.
Identities = 145/391 (37%), Positives = 225/391 (57%), Gaps = 29/391 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N G QHP+ HGV R+I++LD EI++ P +G LHRGTEKL E T+ Q +PY
Sbjct: 2 RTEELLLNVGSQHPSTHGVFRIIVKLDSEIIKDAIPVMGYLHRGTEKLAENLTYTQVIPY 61
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DYV+ M + VE+++ IEIP R + +RV+ E+ R+ SH++ T +D+G
Sbjct: 62 TDRMDYVSAMTNNYVLVHTVEQMMQIEIPERAEYLRVIVMELQRVASHMVWWGTYLLDIG 121
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++P L+ F +RE ++ + G+R+ Y R GGV D P ++ + + L
Sbjct: 122 AMSPFLYAFRDREIIINLFNELCGARLTYNYMRIGGVKWDAPDGWIQKVKDFIPYMYGKL 181
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ L++GN IF R N+G EDA +G SG +R +G WDLRK++PY Y +
Sbjct: 182 EEYDRLVSGNEIFLARIKNVGAYNAEDAIAYGLSGSNLRCTGVKWDLRKNKPYSIYDRFE 241
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FD+P+GK+GDCYDRYL+R+ E+R+S++I+ Q ++ G + P+++
Sbjct: 242 FDVPVGKNGDCYDRYLIRLEEIRQSLRILEQATRQI----PEGEIMGKAPRVI------- 290
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE+Y ++EAP+GE G Y++S G +PYR K R P + +
Sbjct: 291 ------------------KPPEGEMYCSIEAPRGEIGCYIVSRGKPEPYRLKFRRPSFVN 332
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
LQ + L G + ++ ILG +DIV GEVD
Sbjct: 333 LQILPKLLIGETMTNLITILGGIDIVVGEVD 363
>gi|58042477|gb|AAW63678.1| NADH dehydrogenase subunit 7 [Calycanthus floridus]
Length = 364
Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats.
Identities = 210/368 (57%), Positives = 266/368 (72%), Gaps = 4/368 (1%)
Query: 19 AAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
AAHGV R +LE++GE+VER +PHIG LHRGTEKLIE KT+LQA+PY DR DYV+ M QEH
Sbjct: 1 AAHGVSRSVLEMNGEVVERAEPHIGSLHRGTEKLIEYKTYLQALPYSDRSDYVSTMAQEH 60
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREK 138
A++ AVE+LL E+P+R Q IRVL+ EI RI +H L TT AMDVGA TP LW EEREK
Sbjct: 61 AHSSAVERLLNCEVPLRAQYIRVLFREITRISNHSLASTTHAMDVGASTPSLWASEEREK 120
Query: 139 LMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFK 198
L+ F+ER SG+RMHA++ RPGGV QD+P DI F S +++ ++ TGNRI+K
Sbjct: 121 LLEFHERVSGARMHASFIRPGGVAQDLPLGSCRDIDSSTQQFASRIDESEEMSTGNRIWK 180
Query: 199 QRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDR 258
QR V+IGTV + A WGFSGVM+RG G WD R++ PY+ + + D D+P+G GD YDR
Sbjct: 181 QRLVDIGTVTAQQAKDWGFSGVMLRGRGVCWDSRRAAPYDVHDQSDPDVPVGTRGDRYDR 240
Query: 259 YLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLY 318
Y +R+ EMR+SV+II QC N++ G + A D K+ PP R MK SMES IHHF+ Y
Sbjct: 241 YCIRIEEMRQSVRIIVQCPNQM----PSGMIKADDRKLCPPSRCRMKLSMESSIHHFEPY 296
Query: 319 TEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLA 378
TEG+ VP Y AVEAPKGEFGV+L+S+G N+PYR KIRAPG AH Q ++ + K H A
Sbjct: 297 TEGFSVPAPSTYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSMSKHHMPA 356
Query: 379 DVSAILGS 386
DV I+G+
Sbjct: 357 DVVTIIGT 364
>gi|242278964|ref|YP_002991093.1| NADH dehydrogenase (quinone) [Desulfovibrio salexigens DSM 2638]
gi|242121858|gb|ACS79554.1| NADH dehydrogenase (quinone) [Desulfovibrio salexigens DSM 2638]
Length = 383
Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats.
Identities = 146/393 (37%), Positives = 219/393 (55%), Gaps = 27/393 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLR+ILELDGE + R +P +G LHR EK+ E KT++Q +P
Sbjct: 18 ADEHTMILNMGPQHPSTHGVLRVILELDGEYIVRAEPVLGYLHRMHEKMAEVKTWVQFIP 77
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
R+DY+ P+ HAY AVEKL GIE+P R + IRV+ +E+ RI SHLL +D+
Sbjct: 78 NMGRVDYLHPLAWNHAYVGAVEKLAGIEVPERAEYIRVILTELNRISSHLLWWGAYLLDL 137
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP ++GF++RE LM ++A+G+R+ + FR GGV D+ + +
Sbjct: 138 GAFTPIMYGFDDREILMDMMQKATGARLTYSNFRFGGVVHDLDDGFADKCTEFIKRLRDR 197
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L DL+T N I ++R IG + ++ +G +G +IRG+G D R+++PY Y
Sbjct: 198 LPMYKDLVTDNIILRKRIEEIGYMDVDMCNRYGATGPLIRGAGVEHDTRRAEPYSIYDRF 257
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D+ +P+ D RY+VRM E+ +S+ I+ Q + ++
Sbjct: 258 DWKVPVYYEADAMARYMVRMEEIEQSLNIVEQALEQIP---------------------- 295
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E K + P GE Y + E +G+ G++++SDG PYR K+RAPG++
Sbjct: 296 -----EGEHIIKKAPKPTWKAPAGEAYFSTEGARGKVGIHIVSDGSKTPYRIKLRAPGFS 350
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L +G LAD AILGSLD+V E+DR
Sbjct: 351 NLSLFAECAQGTMLADAVAILGSLDMVIPEIDR 383
>gi|220904927|ref|YP_002480239.1| NADH dehydrogenase I subunit D [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219869226|gb|ACL49561.1| NADH dehydrogenase I, D subunit [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 383
Score = 353 bits (905), Expect = 3e-95, Method: Composition-based stats.
Identities = 161/387 (41%), Positives = 232/387 (59%), Gaps = 7/387 (1%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
GPQHPA HGVLR+ LEL+GE + DP +G LHRG EKL E T+ QA+ DRLDY+A
Sbjct: 1 MGPQHPATHGVLRVDLELEGETIVHCDPQVGYLHRGFEKLAEKFTYAQALTLTDRLDYIA 60
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWG 132
M+ Y LAVEKLLGIE P+R + IR + E+ RI SHLL + T A+D+GA+T L+
Sbjct: 61 AMSNNTGYCLAVEKLLGIEAPLRARYIRTIACEMSRISSHLLWLATHALDIGAMTVFLYC 120
Query: 133 FEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLT 192
F ERE L+ +E G+R+ Y R GGV QD+ + + + + FP + + LL
Sbjct: 121 FREREMLLNLFEDLCGARLTLTYPRIGGVRQDVSGRFMSGLQDFVNIFPGRIVEYETLLD 180
Query: 193 GNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKH 252
NRI+ +R V +G V ++A G +G +RGSG +D+R+ PY+ Y+ LDF +P+G
Sbjct: 181 TNRIWLKRTVGVGKVSADEALSLGLTGACLRGSGVDYDVRRHAPYDAYALLDFAVPLGAD 240
Query: 253 GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLI 312
GD Y RY RM E+R+S I++QC++ + GP A D + + + E+ +
Sbjct: 241 GDIYARYRCRMEELRQSTHILQQCIDAM----PPGPTLAEDSPDLLMPPSRWHGTPETTL 296
Query: 313 HHFKLYTEGYHVP---VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
+ L G+V+ + E PKGE G Y IS+G ++PYR +RAP + H+ A+
Sbjct: 297 YGGGLRAVMRDRNIYMAGDVFVSTEVPKGELGFYFISNGSSRPYRMHVRAPSFIHIGALA 356
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +G +AD+ A +GSLD+V GE DR
Sbjct: 357 SIARGGLIADLIANIGSLDVVLGESDR 383
>gi|325104085|ref|YP_004273739.1| NADH dehydrogenase subunit D [Pedobacter saltans DSM 12145]
gi|324972933|gb|ADY51917.1| NADH dehydrogenase subunit D [Pedobacter saltans DSM 12145]
Length = 394
Score = 353 bits (905), Expect = 4e-95, Method: Composition-based stats.
Identities = 175/404 (43%), Positives = 236/404 (58%), Gaps = 30/404 (7%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ S +N GPQHP+ HGVLRL L DGE+V+ V PH+G LHR EK E ++ Q
Sbjct: 13 ISSVSSEEMVLNLGPQHPSTHGVLRLELITDGEVVKEVIPHLGYLHRCFEKHGEALSYNQ 72
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTT 118
+PY DRLDY+A MN HA+ + VEK+LGIE IP R + IRVL E+ RI SHL+ V T
Sbjct: 73 IIPYTDRLDYLASMNNNHAFVMGVEKMLGIEKDIPKRVEYIRVLVCELNRIASHLIAVGT 132
Query: 119 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
+D+GA TP LW F +RE +M E ASG+RM Y GG+ D+P E + D
Sbjct: 133 YGIDIGAFTPFLWCFRDREHIMNMLEWASGARMLYNYIWVGGLFYDLPVGFEERCKEFVD 192
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
F L ++++LLT N+IF R N+G + L+ A +G SG ++RGSG +DLR+ Y
Sbjct: 193 YFRPKLKELNELLTDNQIFISRTANVGVLPLDVAINYGCSGPVLRGSGLKYDLRRVDEYS 252
Query: 239 CYSELDFDIP-----IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASD 293
Y E+DFDIP IG GDC++RY VR+ E+ ES+KII QC+ +L + K P D
Sbjct: 253 VYPEIDFDIPYSKGEIGVVGDCWNRYKVRIDEIGESLKIIEQCIEKLTKEYKRTP--DFD 310
Query: 294 PKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG-GNKP 352
P+ P++ + Y E PKGE G Y I+DG +KP
Sbjct: 311 PRAKLPRK--------------------ITPKAQDFYMRAENPKGELGFYFIADGKSDKP 350
Query: 353 YRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+R K R P + +L + + KG +AD+ AI+GS+DIV GEVDR
Sbjct: 351 FRIKSRGPSFNNLSVLPEISKGVLIADLIAIIGSIDIVLGEVDR 394
>gi|301059613|ref|ZP_07200522.1| respiratory-chain NADH dehydrogenase, 49 Kd subunit [delta
proteobacterium NaphS2]
gi|300446259|gb|EFK10115.1| respiratory-chain NADH dehydrogenase, 49 Kd subunit [delta
proteobacterium NaphS2]
Length = 390
Score = 353 bits (905), Expect = 4e-95, Method: Composition-based stats.
Identities = 160/389 (41%), Positives = 231/389 (59%), Gaps = 27/389 (6%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
+ +N GPQHP+ HGVLR++LELDGE + + P IG LHR EK+ E +T +Q +P R
Sbjct: 29 TMVLNMGPQHPSTHGVLRVVLELDGEYIVKATPVIGYLHRMHEKMAEIRTCIQYMPNMGR 88
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+DY+ P+ A+ A+EKL GIE+P R + IRV+ E+ RI SHL+ +D+GA T
Sbjct: 89 VDYLNPLGWNWAWVGALEKLAGIEVPERAEFIRVITGELNRISSHLVWFGAYILDLGAFT 148
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
P ++ FE+REK++ + SGSR+ ++FRPGGV D+ ++D + + + L
Sbjct: 149 PIMYAFEDREKILDLLQPISGSRLTYSFFRPGGVATDVDAAFLKDTLAFVNHMRNRLPMY 208
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
DL+T N IF++R N+G + LE +G +G +IRGSG A+D+RK++PY Y D+ I
Sbjct: 209 RDLVTDNIIFRKRCENVGVISLEMCRKYGATGPVIRGSGRAYDIRKTEPYSIYDRFDYHI 268
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
P+ ++GD RY VRM EM ES+ II Q VNR+ + PK
Sbjct: 269 PVDENGDAMGRYRVRMAEMAESLNIIEQAVNRIPDGE---HIVQKAPK------------ 313
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
+ P GEVY AVE +G+ GV+L+S+G PYR K+R+PG+++L
Sbjct: 314 ------------PRWKPPKGEVYFAVEGARGKIGVHLVSNGDKYPYRVKLRSPGFSNLSL 361
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
L KGH L D +ILGSLD+V E+DR
Sbjct: 362 FGELAKGHLLQDAVSILGSLDLVIPEIDR 390
>gi|301167764|emb|CBW27348.1| NADH dehydrogenase I chain D [Bacteriovorax marinus SJ]
Length = 377
Score = 352 bits (904), Expect = 4e-95, Method: Composition-based stats.
Identities = 157/400 (39%), Positives = 231/400 (57%), Gaps = 34/400 (8%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+K + T+N GPQHPA HGVLR+ ++ D E V PH+G LHR EK E +
Sbjct: 7 EKLHTDLLTLNMGPQHPATHGVLRVEIKTDSETVAEAIPHLGYLHRCKEKHSEFLDYRGV 66
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+PY DR+DY+A MN EH Y LA+EK+LG E+P R + IRV+ +E+ RI SHL+ T A+
Sbjct: 67 IPYTDRMDYLAAMNMEHGYCLAIEKMLGTEVPKRAEYIRVMVAELQRIASHLMFFGTYAI 126
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D+GA +P L+ F++RE ++ +E SG+R+ Y GGV DI + ++ I +
Sbjct: 127 DLGAFSPFLYAFQDREFILRIFEELSGARLLYNYVWIGGVWNDISDDQLKRIENFLVELE 186
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+ +L+ N IF R N+G V E A+ +G +G ++RGSG WDLRK +PY Y
Sbjct: 187 ENVKKYHNLVGENSIFIGRTANVGVVSKEMAYDYGATGPVLRGSGIDWDLRKKRPYSIYE 246
Query: 242 ELDFDIPI-----GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKI 296
+ DFD + G+ GDC+DRY VR+ME+ ES+KI+RQC+ + + GP+ PK+
Sbjct: 247 DFDFDTVVGEGLKGQVGDCWDRYYVRIMEIFESIKIVRQCLEGI----EEGPIMGKVPKV 302
Query: 297 VPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCK 356
+ VP GE+Y E P+GE G ++++DG PYR K
Sbjct: 303 L-------------------------KVPKGEIYMRTECPRGELGYHIVADGTKNPYRVK 337
Query: 357 IRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+++ + H+ + + G +AD A +GS+DIV GEVDR
Sbjct: 338 VKSSCFTHVSMLPDMAPGQMIADFVASIGSIDIVLGEVDR 377
>gi|300775175|ref|ZP_07085037.1| NADH-quinone oxidoreductase subunit C/D [Chryseobacterium gleum
ATCC 35910]
gi|300505915|gb|EFK37051.1| NADH-quinone oxidoreductase subunit C/D [Chryseobacterium gleum
ATCC 35910]
Length = 407
Score = 352 bits (904), Expect = 5e-95, Method: Composition-based stats.
Identities = 149/394 (37%), Positives = 221/394 (56%), Gaps = 4/394 (1%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
++ + +T+N GP HPA HG+ + IL +DGE + + +G +HR EK+ E + + Q
Sbjct: 17 EQIDGQLYTLNLGPTHPATHGIFQNILTMDGERILHAEQTVGYIHRAFEKISERRNYSQI 76
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
DR++Y + + + VEKL+G+E+P R +RV+ E+ RI HL+ M
Sbjct: 77 TTLTDRMNYCSAPINNLGWHMTVEKLIGVEVPKRVDYMRVILMELARIGDHLICNGVTGM 136
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D GA+T + F ERE++ YE+ G+RM R GG +D P+ E I + +FP
Sbjct: 137 DSGAITGLTYMFIERERIYDMYEQICGARMTTNMGRIGGFERDFTPKFHELIKDFLKTFP 196
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+ LL NRIF R + G + E A +GF+G +R +G +D+R +QPY Y
Sbjct: 197 PRFKEFCTLLERNRIFMDRTIGTGAISAERALSYGFTGPNLRAAGVDYDVRVAQPYSSYQ 256
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ DF IP+G GD YDR++VR E+ ES+KII+Q L GP A P P++
Sbjct: 257 DFDFIIPVGTSGDTYDRFMVRQQEVWESIKIIKQAYENL----PEGPFHADVPDFYLPEK 312
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
AD+ + ME+LI+HFK+ VP GEVY AVE GE G YL+SDGG PYR R P
Sbjct: 313 ADVYQKMEALIYHFKIVMGETDVPKGEVYHAVEGGNGELGFYLVSDGGRSPYRLHFRRPC 372
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ + QA + G ++D + S++I+ GE+D
Sbjct: 373 FIYYQAYPEMITGSVISDAIVTMCSMNIIAGELD 406
>gi|110637784|ref|YP_677991.1| NADH dehydrogenase I subunit D [Cytophaga hutchinsonii ATCC 33406]
gi|123058854|sp|Q11VB5|NUOD2_CYTH3 RecName: Full=NADH-quinone oxidoreductase subunit D 2; AltName:
Full=NADH dehydrogenase I subunit D 2; AltName:
Full=NDH-1 subunit D 2
gi|110280465|gb|ABG58651.1| NADH dehydrogenase subunit D [Cytophaga hutchinsonii ATCC 33406]
Length = 393
Score = 352 bits (904), Expect = 5e-95, Method: Composition-based stats.
Identities = 142/386 (36%), Positives = 214/386 (55%), Gaps = 1/386 (0%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
T+N GP HPA HGV + IL++DGE + P +G +HR EK+ E + F Q DR++
Sbjct: 8 TLNLGPTHPATHGVFQNILKMDGERIVDAVPTVGYIHRAFEKIAERRAFYQITTLTDRMN 67
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
Y + + + VEKL GIE+P R + +RV+ E+ RI HL+ + +D GA T
Sbjct: 68 YCSAPLNNMGWHMTVEKLAGIELPKRVEYMRVVIMELSRIADHLICNSILGVDAGAFTGF 127
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
L+ + RE++ +E G+R+ R GG +D + I + +P+ L + +
Sbjct: 128 LYIMQSREQIYEIFEEICGARLTTNMGRIGGFERDFNDIAMRKIDKFLADYPAVLTEFEN 187
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
L NRIF R + G + E A +GF+G +R +G +D+R + PY Y + DF IPI
Sbjct: 188 LFNRNRIFMDRTIGTGGITAERALNYGFTGPNLRAAGVDYDVRVTSPYSSYQDFDFTIPI 247
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
G +GD YDR++VR EM ES+ IIRQ + ++ G A P P + D+ ME
Sbjct: 248 GINGDTYDRFMVRNKEMWESLSIIRQAMEKIKA-LPKGVFHAEVPDFYLPPKEDVYSQME 306
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
+LI+HFK+ +P GEVY ++E GE G YL+SDGG PYR R P + + QA
Sbjct: 307 ALIYHFKIVMGETEIPKGEVYHSIEGANGELGYYLVSDGGRTPYRLHFRRPCFIYYQAYP 366
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
+ KG ++D + SL+++ GE+D
Sbjct: 367 EMIKGQLISDAVVTMSSLNLIAGEMD 392
>gi|296133534|ref|YP_003640781.1| NADH dehydrogenase I, D subunit [Thermincola sp. JR]
gi|296032112|gb|ADG82880.1| NADH dehydrogenase I, D subunit [Thermincola potens JR]
Length = 367
Score = 352 bits (904), Expect = 5e-95, Method: Composition-based stats.
Identities = 158/394 (40%), Positives = 222/394 (56%), Gaps = 31/394 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K++ T+N GP HP+ HGV R +L L+GE + + HIG LHRG EKL E++T+ Q +PY
Sbjct: 3 KTQELTLNLGPHHPSTHGVFRCVLNLEGEYITKAVNHIGYLHRGLEKLAESRTYTQFIPY 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
RLDYVA M E Y +AVEKLLGI EIP R + IRV+ E+ R+ SH + + A+D
Sbjct: 63 NGRLDYVAGMLNEWGYVMAVEKLLGITEEIPERAEYIRVIVGELQRLASHAIYFASMALD 122
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
V T +GF +R++++ E SG R+ Y R GGV D+P E + D P+
Sbjct: 123 VAGATAWFYGFRDRDEILDVLEMVSGQRLMHNYMRIGGVAADLPDGFEEKVRALLDKLPA 182
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ + +L GN IFK R + + V E A +GF+G +R SG +DLR+ +PY Y
Sbjct: 183 CIEEYEGILIGNEIFKARTIGVAPVSKEMALDYGFTGPNLRASGVDYDLRRDEPYSVYDR 242
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
F++P+ + GD YDR L+R+ EM+ESVKII Q + L GP+ A PK++
Sbjct: 243 FKFNVPVRQGGDTYDRVLIRIEEMKESVKIIEQALKDLPD----GPIMAKVPKVI----- 293
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
PVGEVY+ +E KG G +++SDG KPYR +I +P +
Sbjct: 294 --------------------KPPVGEVYSRIENAKGHLGFHIVSDGSTKPYRTRIYSPCF 333
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ + KG L D L SLDIV GE+DR
Sbjct: 334 VNVGIFPEMAKGLHLMDAVVALASLDIVLGEIDR 367
>gi|317051068|ref|YP_004112184.1| NADH dehydrogenase (quinone) [Desulfurispirillum indicum S5]
gi|316946152|gb|ADU65628.1| NADH dehydrogenase (quinone) [Desulfurispirillum indicum S5]
Length = 402
Score = 352 bits (903), Expect = 6e-95, Method: Composition-based stats.
Identities = 158/392 (40%), Positives = 234/392 (59%), Gaps = 4/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K+ +N GP HPA+HG LR ++ +DGE + IG LHRG EK +E T+ Q +PY
Sbjct: 15 KTDLMYLNLGPSHPASHGTLRTLVAMDGESIVAGVSEIGYLHRGFEKSVEAGTWNQGIPY 74
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRL+Y + + A A+E +GIEI R + +R++ SE+ RI+ HL+ +D+G
Sbjct: 75 TDRLNYCSAIMNNVGLAKAIEGFMGIEITERCRYMRIILSELSRIIDHLVCNAANFVDMG 134
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
ALT + + +RE + F + +G+R+ ++ R GG++ D D+ +
Sbjct: 135 ALTNYWYLYNQREFVYDFLAKLTGARLTNSFTRVGGMYHDFYEGWEADLEDVVSKCEQGI 194
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
D L+ NRI R + + + EDA +GF+G +R +G A+DLRK PY Y E D
Sbjct: 195 LDSMGLVKTNRIVHDRTMGVCAISAEDALSYGFTGPCLRSTGVAYDLRKDAPYYGYDEFD 254
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDIP+G HGD YDR +VR E ES+KIIRQ V R+ G GPV+ D + PK++++
Sbjct: 255 FDIPVGSHGDIYDRIMVRYEECFESMKIIRQAVKRIPG----GPVNVEDGRFFLPKKSEV 310
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
++ESL++HFKL EG PVGE+Y + EA GE G Y++SDGG +PY+ K+R P +
Sbjct: 311 YDNIESLMNHFKLIFEGIKSPVGEMYDSTEAANGELGFYIVSDGGGRPYKIKVRPPCFYM 370
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+QA + +G +AD LGSL+I+ GE+DR
Sbjct: 371 MQAYPHMIEGGMVADAVINLGSLNIIAGELDR 402
>gi|212224720|ref|YP_002307956.1| Hydrogenase 4, component G or formate hydrogen lyase, subunit 5
[Thermococcus onnurineus NA1]
gi|212009677|gb|ACJ17059.1| Hydrogenase 4, component G or formate hydrogen lyase, subunit 5
[Thermococcus onnurineus NA1]
Length = 584
Score = 352 bits (903), Expect = 7e-95, Method: Composition-based stats.
Identities = 111/395 (28%), Positives = 172/395 (43%), Gaps = 32/395 (8%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETK-TFLQA 61
+ K + +GP H A L + GE + VD HRG EK+ E + T+ Q
Sbjct: 191 EPKKDEIVVPYGPYHVALEEAAHFRLYVKGETITDVDYRGFYAHRGIEKISEGRLTYDQV 250
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+R+ + AY AVE GIE+P R + IR + EI R+ SHLLN +
Sbjct: 251 CFIAERICGICGCTHSTAYCQAVENAGGIEVPERAEYIRTIVLEIERLHSHLLNFGIVSH 310
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VG + + RE +M ER +G+R GGV +D+ I
Sbjct: 311 LVGYDYGFMKAWRIREHVMWLAERLTGNRKTYGMLLVGGVRRDLLEYRKSLIEDVLKKIK 370
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+ +++ D F +R +G + + A W G + RGSG +D+R+ PY Y
Sbjct: 371 TEFSELVDEAISTSTFVKRLEGVGVLPYKVAKEWDVDGPLGRGSGRDFDVRRDHPYAAYK 430
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
LDF +P+ K GD R LVR+ E+ ES+ II Q ++++ G + +
Sbjct: 431 YLDFKVPVYKEGDVLARALVRIEEVFESIWIIEQALDQMPGGDILAEYK----------- 479
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
P E EAP+GE Y+++ NK YR + RA
Sbjct: 480 --------------------EIPPYSEAIGMTEAPRGENIHYVMTGENNKVYRYRARAAT 519
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Y +L A+ + +G+ +AD I+ S+D + +R
Sbjct: 520 YNNLPAVPDMMRGYTIADAPLIVASIDPCYSCTER 554
>gi|305666194|ref|YP_003862481.1| NADH dehydrogenase I subunit D [Maribacter sp. HTCC2170]
gi|88707692|gb|EAQ99933.1| NADH dehydrogenase I, chain D [Maribacter sp. HTCC2170]
Length = 373
Score = 351 bits (902), Expect = 9e-95, Method: Composition-based stats.
Identities = 143/395 (36%), Positives = 214/395 (54%), Gaps = 29/395 (7%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ KS + IN GPQHPA HGVLRL+L +DGEI+++V+P +G +HR EK+ E ++ Q
Sbjct: 8 NNFKSEEYFINMGPQHPATHGVLRLLLTIDGEIIKKVEPDLGYIHRSIEKMCERDSYQQI 67
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
V DR+DY++ A LAVE L +E+P R ++IR + E+ RI SH L M
Sbjct: 68 VHLTDRMDYLSSNINNEAVCLAVENALELEVPDRVKVIRTIIGELTRISSHCLWWGVMGM 127
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
DVGALT +GF +RE + +E G+R+ Y PGG+ DI P ++ + + F
Sbjct: 128 DVGALTTYFYGFRDREMINDIFEETCGARLTMNYNVPGGLMFDIHPNFIKRVKDFIAHFK 187
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+ L + LLTGN IF +R +G + EDA +G SG + R SG + D+RK PY
Sbjct: 188 TKLPEYDRLLTGNVIFHKRTKGVGILTKEDAISFGASGPVGRASGYSCDVRKHHPYSALD 247
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
++ F+ + GD + RY VR+ EM ES+ II Q ++ + G ++
Sbjct: 248 KVTFNEALNTEGDTFARYQVRIQEMWESMSIIEQLIDNI----PEGEFRVDTKAVI---- 299
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+P GE Y VE +GE GVY+IS G PYR K R+PG
Sbjct: 300 ---------------------KLPKGEFYQRVETARGELGVYIISTGTKNPYRLKFRSPG 338
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+++L + + G ++ D+ A + +LD+V ++DR
Sbjct: 339 FSNLSLLNHIAVGGKIGDLVATMATLDLVIPDIDR 373
>gi|317153003|ref|YP_004121051.1| NADH dehydrogenase (quinone) [Desulfovibrio aespoeensis Aspo-2]
gi|316943254|gb|ADU62305.1| NADH dehydrogenase (quinone) [Desulfovibrio aespoeensis Aspo-2]
Length = 390
Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats.
Identities = 152/393 (38%), Positives = 221/393 (56%), Gaps = 25/393 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K+ + IN GPQHP+ HGVLR+++E+DGE + R +P +G LHR EK+ ET+T+ +P
Sbjct: 23 KQDGTLIINMGPQHPSTHGVLRIVIEVDGEYIVRAEPVLGYLHRMHEKMGETQTWGGFIP 82
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
R+DY PM AY AVEKL+GIE+P R Q +RV+ +E+ R+ SHLL +D+
Sbjct: 83 NMGRVDYGHPMAWNWAYVGAVEKLMGIEVPERAQYLRVIMTELNRLTSHLLWWGAYILDL 142
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP ++ F++RE L+ +R S SR+ + FR GG+ D+ + +E I + F
Sbjct: 143 GAFTPIMYAFDDREMLLDILQRPSASRLTYSNFRVGGLQMDMDDKCIELIKAFIPHFRKR 202
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L DL+T N I ++R +G + + +G +G ++RG+G +DLRK +PY Y
Sbjct: 203 LPMYHDLVTANIILRRRIEGVGIIDQDMCRRYGCTGPVLRGAGVPYDLRKDEPYSVYDRF 262
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DF+IP + RYLVR+ EM +S++II Q + +L G V
Sbjct: 263 DFEIPTQESACSAGRYLVRVAEMEQSLRIIEQALEQLPGAEGKYIV-------------- 308
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
K P GE Y AVE +G+ GVY+ SDG PYR K+RAPG++
Sbjct: 309 -----------DKAPKPAMKPPAGEAYFAVEGARGKIGVYIASDGNKVPYRVKLRAPGFS 357
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ A G LAD AILGSLD++ E+DR
Sbjct: 358 NMHAFAEAATGTILADAVAILGSLDLIIPELDR 390
>gi|94265854|ref|ZP_01289584.1| NADH dehydrogenase (ubiquinone) [delta proteobacterium MLMS-1]
gi|94272794|ref|ZP_01292187.1| NADH dehydrogenase (ubiquinone) [delta proteobacterium MLMS-1]
gi|93450010|gb|EAT01400.1| NADH dehydrogenase (ubiquinone) [delta proteobacterium MLMS-1]
gi|93453590|gb|EAT03986.1| NADH dehydrogenase (ubiquinone) [delta proteobacterium MLMS-1]
Length = 372
Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats.
Identities = 143/390 (36%), Positives = 221/390 (56%), Gaps = 28/390 (7%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+F +N GPQHPA HG LR+ L +DGE + +P +G +HR EK+ E +T+ Q +P
Sbjct: 11 ETFVLNMGPQHPATHGALRVKLLMDGEYIVEAEPVLGYIHRMHEKMGENRTYHQFLPNPS 70
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDY++ M+ H + AVE+ G+ +P R + +RV+ E+ RI SHLL + +D+G
Sbjct: 71 RLDYLSAMSCTHGHVAAVERAAGLTVPERAEYLRVITVELNRISSHLLWLGAFVLDLGGF 130
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP L+ ++RE+++ ER +GSR+ YFR GG++ D+ + VE + +
Sbjct: 131 TPLLYVMDDREQILDMLERVTGSRLTYCYFRFGGLYNDVDDDFVESARAFVKRMRDKMPM 190
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+L++ N I +QR + + E +G +G + RGSG +D+RK +PY Y E DFD
Sbjct: 191 YHNLISKNVILRQRLEGVAPISAEMCRKYGATGPVARGSGIPYDVRKHEPYSVYPEFDFD 250
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
IP+ +HGD RYLVRM E+ +S++II Q +++L ++ PKI+
Sbjct: 251 IPVYEHGDSMARYLVRMDEIEQSLRIIEQGLDKLPDGPV---MAEKVPKII--------- 298
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
P G+ Y AVEA +G FGV L+SDG N PYR K+R+P ++++
Sbjct: 299 ----------------KPPKGDYYYAVEAARGSFGVRLVSDGTNSPYRLKLRSPCFSNVS 342
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+G LAD A+ GSLD+V ++DR
Sbjct: 343 LFGEAARGLLLADAVALFGSLDLVIPDIDR 372
>gi|327403947|ref|YP_004344785.1| NADH dehydrogenase subunit D [Fluviicola taffensis DSM 16823]
gi|327319455|gb|AEA43947.1| NADH dehydrogenase subunit D [Fluviicola taffensis DSM 16823]
Length = 406
Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats.
Identities = 142/386 (36%), Positives = 211/386 (54%), Gaps = 3/386 (0%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
T+N GP HPA HG+ + +L +DGE + +G +HR EKL E + + Q P DRL+
Sbjct: 23 TLNLGPTHPATHGIFQNVLTVDGEKILGSVQTVGYIHRAFEKLAERRPYNQITPITDRLN 82
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
Y + + + +EKL+G+ +P + +RV+ E+ R+ HL+ + +D GALT
Sbjct: 83 YCSSPINNMGWEMTMEKLIGVTVPKKVDYMRVIIMELARVADHLVCNSVIGVDTGALTGF 142
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ F++RE + YE G+R+ R GG +D P + + F + D
Sbjct: 143 TYMFQQRELIYELYEEVCGARLTTNIGRIGGFERDFSPTFHVKLKKFLKEFNKHFQEFDD 202
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
LL NRIF R + G + E A +GF+G +R +G +D+R PY Y + DF IP+
Sbjct: 203 LLLRNRIFMDRTIGAGPISGERALDYGFTGPNLRAAGVDYDVRVMTPYSSYEDFDFIIPV 262
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
G GD YDR+ VR E+R+S+KII Q N + + P P+ P +AD+ ME
Sbjct: 263 GTQGDTYDRFCVRQEEIRQSMKIIEQAYNNMPEGSYFSP---DVPEFYLPTKADVYTKME 319
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
+LI+HFK+ VPVGEVY AVE GE G +LISDGG PYR + R P + + QA
Sbjct: 320 ALIYHFKIVMGETPVPVGEVYHAVEGGNGELGFHLISDGGRTPYRLQFRRPCFIYYQAYP 379
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
+ G ++D L SL+++ GE+D
Sbjct: 380 EMITGQTISDAVLTLSSLNVIAGELD 405
>gi|261416514|ref|YP_003250197.1| NADH dehydrogenase (quinone) [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261372970|gb|ACX75715.1| NADH dehydrogenase (quinone) [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302328194|gb|ADL27395.1| NADH-quinone oxidoreductase, D subunit [Fibrobacter succinogenes
subsp. succinogenes S85]
Length = 397
Score = 350 bits (897), Expect = 3e-94, Method: Composition-based stats.
Identities = 159/395 (40%), Positives = 223/395 (56%), Gaps = 4/395 (1%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ +K +N GP HPA HG LR + +DGE + IG LHRG EK++E T+ Q
Sbjct: 7 NGEKLNLMPLNVGPSHPATHGCLRFLTAMDGETIVASVEEIGYLHRGFEKMVERGTWQQV 66
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
VPY DRL+Y + + A+ AVE + G+EIP R +++RV+ +E+ RI H + V
Sbjct: 67 VPYTDRLNYCSAIMNNIAFCRAVENMFGVEIPERSKVLRVIVNELSRINDHFVCVAAAFQ 126
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D+G TP ++ F RE++M +E+ +G+R+ ++ R GG+++D +D+ +S
Sbjct: 127 DLGGTTPFMYAFNPREEIMCIWEKLTGARLTNSFARIGGLYRDSYEGFEQDVLAALNSTE 186
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
AL D+ L NRIF R V IG + E A +G++G +R SG A DLRK +PY Y
Sbjct: 187 KALKDLHACLDRNRIFLDRTVGIGKISAEKAISYGWTGPCLRASGVASDLRKDEPYYDYE 246
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
D+++ +G GDC DR VR+ E+ ESVKI+RQ + RL GPV DP+I P
Sbjct: 247 TYDWEVVVGTQGDCNDRLQVRLAEIEESVKIVRQALKRLA----PGPVDIVDPRIRVPAH 302
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ ME LI FK EG VP GE Y E GE G +ISDG PYR K+R P
Sbjct: 303 KLAYQDMEGLIGRFKSVYEGIRVPEGEYYCGSECANGELGFTIISDGSGHPYRIKVRPPC 362
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A L +G LAD A+L L+I+ GE+DR
Sbjct: 363 LTQFAAFHELVEGGLLADSMAVLSGLNIIAGELDR 397
>gi|95928467|ref|ZP_01311215.1| NADH dehydrogenase (ubiquinone) [Desulfuromonas acetoxidans DSM
684]
gi|95135738|gb|EAT17389.1| NADH dehydrogenase (ubiquinone) [Desulfuromonas acetoxidans DSM
684]
Length = 374
Score = 350 bits (897), Expect = 3e-94, Method: Composition-based stats.
Identities = 144/396 (36%), Positives = 220/396 (55%), Gaps = 28/396 (7%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ ++ F +N GPQHP+ HGVLR++LE++GE V P +G HR EK+ E K
Sbjct: 7 LQDERHHRFVLNMGPQHPSTHGVLRVLLEMEGEYVIEPQPVLGYGHRCHEKIAEFKPAKS 66
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+P R+DY+ + H YAL +EK GIE+P R IRV+ SE+ RI SHLL
Sbjct: 67 FMPNTARMDYLGALIYNHGYALLLEKATGIEVPRRADYIRVITSELNRIQSHLLWFGAYL 126
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+D+GA TP ++ F++RE+++ E +GSR+ YFR GGV +DI + V + D
Sbjct: 127 LDLGAFTPIMYAFDDREEILDILEDVTGSRLTYCYFRVGGVCKDIDDKFVASTRNFIDRL 186
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+L+ GN I ++R IG E +G +G ++RG+G ++DLR+++PY Y
Sbjct: 187 RGRFPMYEELVNGNIILQKRLKGIGEYTPELCARYGVTGPLLRGAGISYDLRRAEPYSVY 246
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E DF+IP GD + + VR EM +S++II Q +++L GPV
Sbjct: 247 PEFDFEIPTDPGGDAWASFNVRFREMEQSLRIIEQALDKL----PEGPVM---------- 292
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ +P G+ ++VEAP+GE YL++DG + PYR K+R P
Sbjct: 293 --------------AAKVPKKLKIPAGDYNSSVEAPRGELSYYLVADGSDVPYRLKVRTP 338
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Y++L + +CKG +ADV + +G+LD+V E+DR
Sbjct: 339 SYSNLSVVPEMCKGMMIADVVSAMGALDLVIPEIDR 374
>gi|226227806|ref|YP_002761912.1| NADH-quinone oxidoreductase chain D [Gemmatimonas aurantiaca T-27]
gi|226090997|dbj|BAH39442.1| NADH-quinone oxidoreductase chain D [Gemmatimonas aurantiaca T-27]
Length = 412
Score = 349 bits (896), Expect = 4e-94, Method: Composition-based stats.
Identities = 158/393 (40%), Positives = 227/393 (57%), Gaps = 4/393 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ + +N GP HPA HG +++I ELDGE V R D H G LHRG EK E T+ +P
Sbjct: 24 SRDDTVVVNIGPSHPATHGTVQIIAELDGEKVLRTDVHCGYLHRGFEKECEDHTWHNLIP 83
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRL+Y + + AY VE+L+GIEI R + +R L SE R+ HL V M++
Sbjct: 84 YVDRLNYCSALINNFAYCDGVEQLMGIEITPRTKYLRTLLSEYSRLADHLTCVAASLMEL 143
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+T L+ R+ + +G+R+ +Y R GG+ D+P + +G +
Sbjct: 144 GAMTAFLYLVTVRDSMYEHLAALTGARVTYSYGRIGGLAADVPDGWFKRLGEILRDYEQY 203
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ L+ NRIF R N+GT+ DA WGF+G ++R +GA DLRK PY Y+EL
Sbjct: 204 AERVHGLVDRNRIFIDRLRNVGTINTADALHWGFTGPVLRSTGAKRDLRKDTPYLAYAEL 263
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DFD+P+G GD YDRY VRM EM ESV +IRQ ++ + GP++ D + V P++
Sbjct: 264 DFDVPVGIFGDNYDRYYVRMREMDESVYMIRQLMDMIPD----GPINVDDRRCVFPEKQL 319
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ +ESLI+HFKL EG VP G+ Y A E GE G Y++S G PY+ +R+P +
Sbjct: 320 VYSEIESLINHFKLVMEGPAVPAGDAYVAHEGANGELGFYIVSTGEGVPYKVHVRSPSFV 379
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H+ + G+QLAD+ GS++++ GE DR
Sbjct: 380 HMGGAHRMLDGYQLADIVTSFGSINMIGGECDR 412
>gi|255037832|ref|YP_003088453.1| NADH dehydrogenase (quinone) [Dyadobacter fermentans DSM 18053]
gi|254950588|gb|ACT95288.1| NADH dehydrogenase (quinone) [Dyadobacter fermentans DSM 18053]
Length = 408
Score = 349 bits (896), Expect = 4e-94, Method: Composition-based stats.
Identities = 152/395 (38%), Positives = 228/395 (57%), Gaps = 4/395 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + T+N GP HPA HG+ + +L++DGE + + IG +HR EK+ E + F Q
Sbjct: 17 LPELVEELTTLNLGPTHPATHGIFQNVLKMDGEKIVSGEQTIGYIHRAFEKIAERRPFYQ 76
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
DR++Y + + + VEKLLGIE+P R Q IRV+ E+ RI H++ +
Sbjct: 77 ITTLTDRMNYCSSPINNMGWHMTVEKLLGIEVPKRAQYIRVIMMELARITDHIICNSILG 136
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+D GA T L+ ++RE++ YE G+R+ R GG+ +D+ + I + SF
Sbjct: 137 VDTGAFTGFLYVMQKREEVYEIYEEVCGARLTTNMGRVGGMERDLSSAAIRKINDFIKSF 196
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P+ L ++ LL NRIF R +N+G + E A +GF+G +R +G +D+R PY Y
Sbjct: 197 PAVLRELEKLLNRNRIFMDRTINVGPISAERALSYGFTGPNLRAAGVDYDVRVMNPYSSY 256
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+ DF++PIG+ GD +DRY+VR EM +S+KI+ Q +N L GP A P+ P
Sbjct: 257 EDFDFEVPIGQSGDTFDRYMVRNEEMWQSLKIVEQAINNL----PEGPYYADAPEFYLPP 312
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ ++ +SME+LI+HFK+ P GEVY AVE GE G YLISDGG PYR R P
Sbjct: 313 KNEVYKSMEALIYHFKIVMGEIDAPAGEVYHAVEGGNGELGFYLISDGGRAPYRLHFRRP 372
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ + QA +CKG L+D + SL+++ GE+D
Sbjct: 373 SFIYYQAYPEMCKGSSLSDAILTMSSLNVIAGELD 407
>gi|332883541|gb|EGK03824.1| NADH-quinone oxidoreductase subunit D [Dysgonomonas mossii DSM
22836]
Length = 411
Score = 349 bits (896), Expect = 4e-94, Method: Composition-based stats.
Identities = 145/386 (37%), Positives = 211/386 (54%), Gaps = 4/386 (1%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+NFGP HP+ HGV + IL +DGE + D IG +HR EK+ E +TF Q DRL+
Sbjct: 29 VLNFGPTHPSTHGVFQNILLMDGERILDADTTIGYIHRAFEKIAEHRTFYQITTLTDRLN 88
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
Y + A+ + VEK LG+E+P R Q +RV+ E+ RI HL+ + +D+GA TP
Sbjct: 89 YCSAPLNNMAWWMTVEKSLGVEVPKRAQYMRVIVMELARITDHLICNSILGVDLGAYTPF 148
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
L+ + RE YE G+R+ R GG +D + + + FP A + +
Sbjct: 149 LYVMQYRELAYEIYEEICGARLTTNMGRIGGFERDWSEAAWRKLDEFIEGFPKAWDQLER 208
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
L NRIF R V +G + E A +GF+G +R +G +D+R + PY Y + DF +P+
Sbjct: 209 LFIRNRIFMDRIVGVGAISAEKAINYGFTGPNLRAAGVDYDVRVANPYSSYQDFDFKVPV 268
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
G GD YDR+ VR E++ES+ IIRQ + + G A P P + ++ ME
Sbjct: 269 GSSGDTYDRWCVRAAEIKESLSIIRQARDNMPD----GSFHADVPDYYLPPKEEVYTQME 324
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
LI HFK+ VP+ EVY AVE GE G+YLI+DG P+R R P + + QA
Sbjct: 325 QLIQHFKIVMGEVPVPIAEVYHAVEGANGELGIYLITDGSRAPFRVHFRRPCFIYYQAFP 384
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
+ KG +D A L S++++ GE+D
Sbjct: 385 EMIKGGMFSDAVATLSSINVIAGELD 410
>gi|297616445|ref|YP_003701604.1| NADH dehydrogenase (quinone) [Syntrophothermus lipocalidus DSM
12680]
gi|297144282|gb|ADI01039.1| NADH dehydrogenase (quinone) [Syntrophothermus lipocalidus DSM
12680]
Length = 368
Score = 349 bits (895), Expect = 5e-94, Method: Composition-based stats.
Identities = 149/396 (37%), Positives = 224/396 (56%), Gaps = 28/396 (7%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + IN GPQHP+ HG L L+GE+V + H+G +HR EK+ E++T+ Q
Sbjct: 1 MRVLSAERMVINIGPQHPSTHGGLHAETVLEGELVVDMAVHVGYVHRSFEKIAESRTYSQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY RLDY+A Y AVEKL GI +P R + IRV+ +E+ RI SHLL + + A
Sbjct: 61 YIPYTSRLDYLASHLPTLGYVQAVEKLAGIAVPERAEYIRVIMAELSRIASHLLYIGSLA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+D+GA T ++ F +RE++M +E SG R+ A+Y R GGV +D+P E + +
Sbjct: 121 IDLGATTGLIYCFRDRERIMDMFEMTSGQRLIASYMRLGGVAEDLPDEFFPAVKSFLADL 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P L + LL GN +F+ R +G + +DA +G SG +R G A+D+RK++PY Y
Sbjct: 181 PQMLEEYDRLLFGNELFQARLKGVGRLSAQDAIAYGTSGPNLRACGVAYDIRKAEPYGIY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+F+IP+G GDC+DR +VR+ E+++S +II Q + L + G V P+++ +
Sbjct: 241 ERFEFEIPVGTEGDCWDRTMVRVEEIKQSARIIEQALRGLPRGDIRGKV----PRVLKVE 296
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ EVY +E+ KGE G Y+++DGG KPYR IRAP
Sbjct: 297 KGR------------------------EVYHRIESSKGELGYYIVADGGEKPYRLHIRAP 332
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +L + + KG + DV A + +LD V GE DR
Sbjct: 333 SFVNLMVLPLISKGGLVQDVIANIATLDPVLGEADR 368
>gi|225155892|ref|ZP_03724377.1| NADH dehydrogenase (quinone) [Opitutaceae bacterium TAV2]
gi|224803345|gb|EEG21583.1| NADH dehydrogenase (quinone) [Opitutaceae bacterium TAV2]
Length = 386
Score = 348 bits (894), Expect = 6e-94, Method: Composition-based stats.
Identities = 155/397 (39%), Positives = 214/397 (53%), Gaps = 29/397 (7%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
D ++ GP HP HGV R++ LDGEI+ ++ P G LHR EKL E T+L +
Sbjct: 17 DPYHGDLLEVSMGPHHPYTHGVFRMVATLDGEIIVKLKPVFGYLHRNHEKLAENTTYLAS 76
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+PY DRLDY++ + AY AVEKL G+ +P RG+ +RV+ E+ R+++H V
Sbjct: 77 IPYTDRLDYLSSLTNNWAYVHAVEKLAGLTVPERGEYVRVIVGELARLINHACLVGFLLN 136
Query: 122 DVG-ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD-S 179
D+G + TP L+ ERE ++ E +GSRM Y R GGV D+ PE + + + +
Sbjct: 137 DLGTSFTPLLYSLREREHMLDLIEELTGSRMMCNYMRFGGVRADLSPEWLAKLKTYLEND 196
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
F L++ LLT N I R G + A G +G M+R SG +D+RK Y
Sbjct: 197 FARYLDEQDALLTTNEILLARTQGAGVLPAALAINAGITGPMLRASGVPYDIRKVDTYSI 256
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y DF +P+G HGD YDRY++RM+EMRES+KI++Q + + P
Sbjct: 257 YDRFDFRVPLGAHGDTYDRYMMRMLEMRESLKILQQALRDIPAGPVTDP----------- 305
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
K + G GE YA +EAPKGE G +LISDG +PYR +IR
Sbjct: 306 ----------------KAKSRGLRPKPGEAYARIEAPKGELGFHLISDGSPQPYRYRIRP 349
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
P +L +E +C G LAD LGS+DIV GEVDR
Sbjct: 350 PSLINLTILEDMCIGGTLADAVITLGSVDIVLGEVDR 386
>gi|255533960|ref|YP_003094332.1| NADH dehydrogenase (quinone) [Pedobacter heparinus DSM 2366]
gi|255346944|gb|ACU06270.1| NADH dehydrogenase (quinone) [Pedobacter heparinus DSM 2366]
Length = 404
Score = 348 bits (894), Expect = 7e-94, Method: Composition-based stats.
Identities = 147/394 (37%), Positives = 215/394 (54%), Gaps = 1/394 (0%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ +S T+N GP HPA HGV + +L++DGE + IG +HR EK+ E + F Q
Sbjct: 11 NDPQSELVTLNLGPTHPATHGVFQNVLQMDGERIVSGVSTIGYIHRAFEKIAEHRPFYQI 70
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
P DRL+Y + + + VEKLL I++P R +RV+ E+ RI H++ T
Sbjct: 71 TPLTDRLNYCSSPINNMGWHMTVEKLLNIQMPKRVDYLRVIIMELARISDHIICNTIIGQ 130
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D GA T L+ F+ RE + YE G+R+ R GG +D I + FP
Sbjct: 131 DTGATTTFLYLFQFREHIYEIYEEICGARLTTNIGRIGGFERDFNAIAFAKINKFLKEFP 190
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
AL + +LL NRIF R + V E A + ++G ++R +G +D+R S+PY Y
Sbjct: 191 VALREFENLLNRNRIFIDRTSGVACVTAEQALDYSWTGPLLRATGVDYDVRVSEPYSSYE 250
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ DF++P+G GD YDRYLVR EM +SV++I Q + +L K G A P+ P +
Sbjct: 251 DFDFEVPVGTAGDIYDRYLVRNEEMWQSVRLIEQALEKL-KKEPAGIFHADVPEFYLPAK 309
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
++ +ME+LI+HFK+ P EVY AVE GE G YLI+DGG PYR R P
Sbjct: 310 EEVYNNMEALIYHFKIVMGEIDAPKAEVYHAVEGGNGELGFYLINDGGRTPYRLHFRRPS 369
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ + Q + KG L+D + S++I+ GE+D
Sbjct: 370 FINYQMFAPMSKGMLLSDAIINMSSMNIIAGELD 403
>gi|89895331|ref|YP_518818.1| NADH dehydrogenase I chain D [Desulfitobacterium hafniense Y51]
gi|122482327|sp|Q24UB8|NUOD_DESHY RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|89334779|dbj|BAE84374.1| NADH dehydrogenase I chain D [Desulfitobacterium hafniense Y51]
Length = 370
Score = 348 bits (894), Expect = 7e-94, Method: Composition-based stats.
Identities = 148/392 (37%), Positives = 216/392 (55%), Gaps = 29/392 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ + +N GPQHP+ HGV R+++ L GE V ++P IG LHRG EK+ E++T+ Q +P
Sbjct: 7 EGTEELLLNMGPQHPSMHGVFRMVVRLQGETVTGIEPKIGYLHRGLEKIAESRTYPQFIP 66
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDY+A + AY VEKL+G+EIP R + +R++ +E+ R SH + + + A+D+
Sbjct: 67 YTDRLDYLASPHNNLAYVQTVEKLMGLEIPERAEYLRIILAELARFASHQVFIASAALDM 126
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
T + F +RE+++ +E SGSR+ R GGV + P E + + D P
Sbjct: 127 AGWTAWGYPFRDRERILDLFEMMSGSRLTVNCMRIGGVSAEPPAEFWPALESFLDDMPEK 186
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L + ++ GN I + R +G + E A +G +R SG +D+RK++PY Y
Sbjct: 187 LEEYFNIYMGNEIAQARMKKVGILSKEVAENLCITGPALRASGVQYDVRKAEPYGIYDRF 246
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DF++P+ D YDR L+R MEM ES+KIIRQ V + GP+ A PKI+
Sbjct: 247 DFEVPVLYGCDTYDRNLIRFMEMNESLKIIRQAVRDI----PEGPIMAKVPKII------ 296
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
P GEVY VE PKGE G Y++S+G KP R KIRA +
Sbjct: 297 -------------------KPPAGEVYHRVENPKGELGFYIVSNGTPKPERVKIRAGAFV 337
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+LQ + + G + D+ A SLD V GEVD
Sbjct: 338 NLQCLNEIGVGTYIQDLIASFASLDAVLGEVD 369
>gi|326800732|ref|YP_004318551.1| NAD(P)H-quinone oxidoreductase subunit H [Sphingobacterium sp. 21]
gi|326551496|gb|ADZ79881.1| NAD(P)H-quinone oxidoreductase subunit H [Sphingobacterium sp. 21]
Length = 382
Score = 348 bits (894), Expect = 8e-94, Method: Composition-based stats.
Identities = 177/404 (43%), Positives = 231/404 (57%), Gaps = 30/404 (7%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + IN GPQHP+ HGVLRL + DGEIV+ V PH+G LHR EK E+ + +
Sbjct: 1 MSELGPEEMIINIGPQHPSTHGVLRLEVISDGEIVKEVVPHMGYLHRCFEKHAESMNYGK 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTT 118
+P+ DR+DY+A MN HA+ + VE++LG+ EIP R + IRVL E+ RI SHL+ + T
Sbjct: 61 TIPFTDRMDYLASMNNSHAFVMGVERMLGLDKEIPKRIEYIRVLVCELNRIASHLIAIGT 120
Query: 119 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
+D+GA TP +W F +RE +M E ASGSRM Y GG+ D+P E +
Sbjct: 121 YGIDIGAFTPFMWCFRDREHIMNMLEWASGSRMLYNYIWIGGLFYDLPVGFEERCKEFVH 180
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
F L ++ +LLT N+IF R NIG + LE A +G SG M+R SG WDLR+ Y
Sbjct: 181 YFKPKLVELDELLTNNQIFISRTANIGALPLEVAINYGCSGPMLRASGLKWDLRRVDEYS 240
Query: 239 CYSELDFDIPI-----GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASD 293
Y E+DFDIPI GK GDC+DRY VR+ E+ ESVKII QC+ RL K P D
Sbjct: 241 VYPEIDFDIPIGKGEMGKKGDCWDRYKVRVDEIVESVKIIEQCLERLQKDLKRTP--DFD 298
Query: 294 PKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGG-NKP 352
P+ + PK+ + Y E PKGE G Y I+DG + P
Sbjct: 299 PRGLVPKK--------------------VSPKAQDYYVRAENPKGELGFYFITDGKLDIP 338
Query: 353 YRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
R K R P + +L + L K +AD+ AILGS+DIV GEVDR
Sbjct: 339 RRVKARGPSFNNLSVLPELSKNILIADLIAILGSIDIVLGEVDR 382
>gi|219669765|ref|YP_002460200.1| NADH dehydrogenase (quinone) [Desulfitobacterium hafniense DCB-2]
gi|219540025|gb|ACL21764.1| NADH dehydrogenase (quinone) [Desulfitobacterium hafniense DCB-2]
Length = 370
Score = 348 bits (894), Expect = 8e-94, Method: Composition-based stats.
Identities = 148/392 (37%), Positives = 216/392 (55%), Gaps = 29/392 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ + +N GPQHP+ HGV R+++ L GE V ++P IG LHRG EK+ E++T+ Q +P
Sbjct: 7 EGTEELLLNMGPQHPSMHGVFRMVVRLQGETVTGIEPKIGYLHRGLEKIAESRTYPQFIP 66
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DRLDY+A + AY VEKL+G+EIP R + +R++ +E+ R SH + + + A+D+
Sbjct: 67 YTDRLDYLASPHNNLAYVQTVEKLMGLEIPERAEYLRIILAELARFASHQVFIASAALDM 126
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
T + F +RE+++ +E SGSR+ R GGV + P E + + D P
Sbjct: 127 AGWTAWGYPFRDRERILDLFEMMSGSRLTVNCMRIGGVSAEPPAEFWPALESFLDDMPEK 186
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L + ++ GN I + R +G + E A +G +R SG +D+RK++PY Y
Sbjct: 187 LEEYFNIYMGNEIAQARMKKVGILSKEVAENLCITGPALRASGVQYDVRKAEPYGIYDRF 246
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DF++P+ D YDR L+R MEM ES+KIIRQ V + GP+ A PKI+
Sbjct: 247 DFEVPVLYGCDTYDRNLIRFMEMNESLKIIRQAVRDI----PEGPIMAKVPKII------ 296
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
P GEVY VE PKGE G Y++S+G KP R KIRA +
Sbjct: 297 -------------------KPPAGEVYHRVENPKGELGFYIVSNGTPKPERVKIRAGAFV 337
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+LQ + + G + D+ A SLD V GEVD
Sbjct: 338 NLQCLNEIGVGTYIQDLIASFASLDAVLGEVD 369
>gi|308275206|emb|CBX31803.1| NADH-quinone oxidoreductase subunit D [uncultured Desulfobacterium
sp.]
Length = 375
Score = 348 bits (893), Expect = 8e-94, Method: Composition-based stats.
Identities = 153/390 (39%), Positives = 221/390 (56%), Gaps = 29/390 (7%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
R + +N GPQHP+ HGVL +L LDGE+V + + IG HRG EK+ E + + Q P
Sbjct: 15 RLYQLNLGPQHPSTHGVLHFLLTLDGEVVVKAEMLIGYTHRGHEKMAENRIYEQFYPNSA 74
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+DY++ M Y AVEKL GIE+P R Q IRV+ SE+ R+ SHLL V M +GA
Sbjct: 75 RMDYLSGMIFNTGYCEAVEKLCGIEVPKRAQYIRVITSELNRVASHLLGVMDFVMGLGAY 134
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP L+G+++RE ++ E SGSR+ Y R GGV DI + + D
Sbjct: 135 TPFLYGWDDREIILDLLETISGSRLTYNYSRFGGVRVDIDQAFCDSAKRFIDRMRGRFKL 194
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+DL+TGN IF +R V +G + + A +G +G +RGSG +D+RKS+PY Y + +F+
Sbjct: 195 YNDLITGNIIFIKRTVGVGVISKDVALDYGVTGPTLRGSGVNYDVRKSEPYSSYEDFNFE 254
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
IP + GDC RYLVR+ E+ +S++II Q +N L GP+ A P+ +
Sbjct: 255 IPTKEEGDCMARYLVRLAEIEQSLRIIEQAINNLPD----GPIRADVPRFI--------- 301
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
P G+ Y + E+ +G G Y++SDG PYR K+RAP +++L
Sbjct: 302 ----------------TPPSGDCYYSFESARGAVGYYIVSDGTRIPYRLKVRAPSFSNLF 345
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
M + GH +AD+ AI GS+D+ E+DR
Sbjct: 346 VMSKIIPGHFVADLVAIFGSIDVTVPEIDR 375
>gi|313206213|ref|YP_004045390.1| NADH dehydrogenase subunit d [Riemerella anatipestifer DSM 15868]
gi|312445529|gb|ADQ81884.1| NADH dehydrogenase subunit D [Riemerella anatipestifer DSM 15868]
gi|315023102|gb|EFT36115.1| NADH-ubiquinone oxidoreductase chain D [Riemerella anatipestifer
RA-YM]
gi|325336340|gb|ADZ12614.1| NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Riemerella
anatipestifer RA-GD]
Length = 407
Score = 348 bits (893), Expect = 9e-94, Method: Composition-based stats.
Identities = 138/394 (35%), Positives = 214/394 (54%), Gaps = 4/394 (1%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
++ +T+N GP HPA HG+ + +L +DGE + + +G +HR EK+ E + + Q
Sbjct: 17 EQIDGELYTLNLGPTHPATHGIFQNVLTMDGEKILHSEQTVGYIHRAFEKISERRPYAQI 76
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
DRL+Y + + + VEKL+G ++P R +R++ E+ RI HL+ +
Sbjct: 77 TTLTDRLNYCSAPINNLGWHMTVEKLIGCKVPKRVDYMRIIIMELARIADHLVCNGVIGV 136
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D GA+T + F++RE++ YE+ G+RM R GG +D P+ E I + +FP
Sbjct: 137 DTGAITGFTYVFQDRERIYEMYEQICGARMTTNIGRIGGFERDFSPKFHELIKDFIKNFP 196
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+ +L+ NRIF R + G + E A + F+G +R +G +D+R +QPY Y
Sbjct: 197 KRFQEFCNLMERNRIFMDRTIGAGPISAERALNYSFTGPNLRAAGVDYDVRVAQPYSSYD 256
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ DF IP+G GD YDR++VR E+ ES K+ V G A P+ P +
Sbjct: 257 DFDFIIPVGTAGDTYDRFMVRQQEIWESYKL----VKNAYENLPEGDYHADVPEFYLPAK 312
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
AD+ ME+LI+HFK+ +P GEVY VE GE G YLISDGG PYR R P
Sbjct: 313 ADVYTKMEALIYHFKIVMGEQDIPKGEVYHCVEGGNGELGFYLISDGGRTPYRLHFRRPC 372
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ + QA + KG ++D + S++++ GE+D
Sbjct: 373 FIYYQAFPEMIKGSMISDAIVTMSSMNVIAGELD 406
>gi|188996568|ref|YP_001930819.1| NADH-ubiquinone oxidoreductase chain 49kDa [Sulfurihydrogenibium
sp. YO3AOP1]
gi|218534336|sp|B2V8J2|NUOCD_SULSY RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|188931635|gb|ACD66265.1| NADH-ubiquinone oxidoreductase chain 49kDa [Sulfurihydrogenibium
sp. YO3AOP1]
Length = 576
Score = 348 bits (893), Expect = 1e-93, Method: Composition-based stats.
Identities = 160/393 (40%), Positives = 229/393 (58%), Gaps = 15/393 (3%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K+ +N+GP HP HG + + +LDGE V++ D IG LHRG EKL E + Q +PY
Sbjct: 198 KTSQIVLNWGPLHPGTHGTIWFLFDLDGEYVKQCDIIIGQLHRGVEKLGENVNWQQFIPY 257
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY+A +N+ HAY LA EK+LGIE+P + + IR + +E+ RI SHLL + T A+D+G
Sbjct: 258 TDRMDYIAAINENHAYVLAAEKMLGIEVPEKAKWIRTMMAELSRINSHLLWLGTYALDLG 317
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
ALT L+ F EREK+M E +G+R YFR GGV D+P ++ I P +
Sbjct: 318 ALTMFLYTFREREKIMDIIEGITGARFTINYFRIGGVFADLPYGALDAIEHLIKDLPQRI 377
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
ND LLT NR++ RN ++ + ED + +G +G + RGSG +D+RK Y+ Y E++
Sbjct: 378 NDYETLLTRNRVWLSRNKDVCVITEEDVYQYGLTGAVARGSGVPYDVRKIDKYDAYGEVE 437
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDIP+G+ GD YDRYLVRM EMR+S++II QC+ +L +K P P K
Sbjct: 438 FDIPVGEKGDSYDRYLVRMEEMRQSIRIIEQCIAKLRKMSKDDPYFFQTPDEKKLKVTID 497
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGN-KPYRCKIRAPGYA 363
R M +P GE YA+ + P+GE G Y+ + K +R +IR+ +
Sbjct: 498 GRGM--------------KLPAGETYASSDNPRGELGFYIYNKKDGLKAHRMRIRSGAFY 543
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ G +AD +L ++D V GE DR
Sbjct: 544 NLQVFTKAIIGRPIADAITLLSTIDPVVGETDR 576
>gi|269128692|ref|YP_003302062.1| NADH dehydrogenase (quinone) [Thermomonospora curvata DSM 43183]
gi|268313650|gb|ACZ00025.1| NADH dehydrogenase (quinone) [Thermomonospora curvata DSM 43183]
Length = 385
Score = 348 bits (892), Expect = 1e-93, Method: Composition-based stats.
Identities = 132/393 (33%), Positives = 210/393 (53%), Gaps = 26/393 (6%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ + +N GPQHP+ HGVLRL L LDGE + + +P IG +HRG EKL E + + Q +
Sbjct: 18 ELATEDMVLNIGPQHPSTHGVLRLRLTLDGERITKAEPIIGYMHRGAEKLFEARDYRQII 77
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
+R D+++ E LAVE++LG++ P R +R L +E+ R+L+HL+ + + ++
Sbjct: 78 VLANRHDWLSAFANELGVVLAVERMLGMQAPERAVWVRTLLAELNRVLNHLMFLGSYPLE 137
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F ERE+L E SG R+H + R GG+ +++P S
Sbjct: 138 VGAMTPIFYSFRERERLQRVMEEVSGGRIHYMFNRVGGLKEELPAGWTGRARQAIAQVRS 197
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++DI+DL+ GN IF+ R +G + E +G SG + R SG +DLR+ +PY Y E
Sbjct: 198 RMSDIADLIMGNEIFRARTRGVGVLTAEQIAQYGVSGPIARASGVDFDLRRDEPYLAYPE 257
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LD + GDC R+ + ++ S+ + C++RL + GP++ PK++
Sbjct: 258 LDVKVVTRTEGDCLARFECLLEQVYVSLDLAEACLDRL-AELPPGPINQRLPKVL----- 311
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
VP G Y E P G G YL+S G P+R K+R+ +
Sbjct: 312 --------------------KVPEGHTYVWTENPLGINGYYLVSRGEKTPWRLKLRSASF 351
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
++Q + + G +AD+ AILGS+ V G++D
Sbjct: 352 NNIQVLGEMLPGTLVADMIAILGSMFFVVGDID 384
>gi|299830276|ref|YP_003734440.1| NADH dehydrogenase subunit 7 [Paramecium caudatum]
gi|299507835|emb|CAZ66819.1| NADH dehydrogenase subunit 7 [Paramecium caudatum]
Length = 423
Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats.
Identities = 198/395 (50%), Positives = 266/395 (67%), Gaps = 9/395 (2%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
INFGP+HPAAHGVLRLIL+L+GE+VE++D HIGLLHRG+EKL+ETK +LQ+VPYFDR DY
Sbjct: 29 INFGPRHPAAHGVLRLILQLNGEVVEKMDIHIGLLHRGSEKLMETKPYLQSVPYFDRFDY 88
Query: 71 VAPMNQEHAYALAVEKLLGIE-IPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
V+ M QEHAY LA+E LL LIR ++ E+ RIL+H+L V A+D+G+++
Sbjct: 89 VSMMVQEHAYCLAIESLLNTTNFTANFVLIRTMFDELTRILNHMLGVACHALDIGSMSSI 148
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDI-PPELVEDIGCWCDSFPSALNDIS 188
W FEEREK+M FYER G+RMHAA++RP V+ + L+ DI + ++ L+++
Sbjct: 149 FWAFEEREKIMEFYERVCGARMHAAFYRPNEVNLNFLSITLLNDILEFNNNCLITLSEMH 208
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRK--SQPYECYSELDFD 246
++LT N+I+KQR VNIG++ +D +G +GVM R +G DLR Y Y L+F
Sbjct: 209 NILTYNKIWKQRLVNIGSISYKDCLDFGLTGVMARSTGIKRDLRMDAFDTYANYYYLNFR 268
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK-----R 301
G+ GD YDR+L+RM EM ES+ II Q V +L K S + K
Sbjct: 269 SYTGQAGDSYDRFLIRMNEMSESINIISQTVFKLTTNKKNCNPSKLLKALNKKKFMSQTY 328
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ SME LI HFK ++EG + Y AVE+PKGEFGV LISDG NKPYRCK+R+P
Sbjct: 329 KNEYSSMEKLITHFKYWSEGQKINSNWTYQAVESPKGEFGVTLISDGTNKPYRCKVRSPA 388
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ HLQ + + KGH LAD+SA++G++DIVFGE+DR
Sbjct: 389 FHHLQVLPKMSKGHLLADLSALIGTIDIVFGEIDR 423
>gi|218886691|ref|YP_002436012.1| NADH dehydrogenase (quinone) [Desulfovibrio vulgaris str. 'Miyazaki
F']
gi|218757645|gb|ACL08544.1| NADH dehydrogenase (quinone) [Desulfovibrio vulgaris str. 'Miyazaki
F']
Length = 406
Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats.
Identities = 150/393 (38%), Positives = 220/393 (55%), Gaps = 27/393 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ S +N GPQHP+ HGVLR++LELDGE + R +P +G LHR EK+ E KT Q +P
Sbjct: 41 ARPESLILNMGPQHPSTHGVLRVLLELDGEYIVRAEPVLGYLHRMHEKMAEVKTPAQFMP 100
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
R+DY+ + AY AVEKL GIEIP R + +RV+ E+ RI SHLL +D+
Sbjct: 101 NMGRVDYLHALAWNWAYVGAVEKLAGIEIPERAEYLRVITCELNRISSHLLWWGAYLLDL 160
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP ++ F++RE L+ + +GSR+ + FR GGV+ D P V+ + + S
Sbjct: 161 GAFTPIMYAFDDREMLLDLLQLMTGSRLTYSSFRFGGVYTDASPAFVQGVRQFIPHLRSR 220
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L + L+T N I ++R +G + + +G SG + RGSG A+D+R+++PY Y
Sbjct: 221 LPMYTALVTENIILRRRIEEVGVIPQDMVTRYGASGPVARGSGIAYDVRRAEPYSVYDRF 280
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
D++IP+ RY+VRM E+ +S++I+ Q + L +
Sbjct: 281 DYEIPVRHEECSMARYMVRMAEIEQSLRIVEQAIENLPDGEHM----------------- 323
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
H K + +P GE Y AVE +G+ GV++ SDGG PYR K+RAPG++
Sbjct: 324 ----------HPKAPKPSFKLPAGESYFAVEGARGKIGVWIASDGGKTPYRVKLRAPGFS 373
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L +G LAD AILGSLD+V E+DR
Sbjct: 374 NLALFAECARGTLLADAVAILGSLDMVIPEIDR 406
>gi|170289766|ref|YP_001736582.1| NADH dehydrogenase subunit D [Candidatus Korarchaeum cryptofilum
OPF8]
gi|170173846|gb|ACB06899.1| NADH dehydrogenase subunit D [Candidatus Korarchaeum cryptofilum
OPF8]
Length = 389
Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats.
Identities = 144/393 (36%), Positives = 216/393 (54%), Gaps = 8/393 (2%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ R+ + GPQHPA+ G +RL+ ++DG+IV + P+IG +HR EKL E K FLQ +P
Sbjct: 4 EERTLELLIGPQHPAS-GHMRLVAKIDGDIVVELRPNIGYVHRSVEKLAEVKKFLQIIPL 62
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
+R AY +A+EKLLGI+ P R + +R L +EI RI SHL + + +G
Sbjct: 63 VERPSLADTTANNLAYVMALEKLLGIDPPERAKYLRTLLAEINRIHSHLYGLGIHGVMIG 122
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
+ T +W F +RE + + +G+R+ +Y PGGV +D+P E +
Sbjct: 123 SSTAYMWCFGDREPFLELAQELTGARLTYSYIIPGGVRRDLPKGFAERAEKALKYLEGRM 182
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
D D+ N + + R +G + EDA G +G +R SG A+D+R+++PY Y LD
Sbjct: 183 KDYFDIYFNNPVVRARLEGVGVLSKEDAIKLGVTGPNLRASGVAYDVRRAEPYAAYPNLD 242
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK-RAD 303
FD+ + GDCY R +VR+ E+ ES+KIIRQ + + + S K++PPK R +
Sbjct: 243 FDVITEEEGDCYARVMVRVREIMESIKIIRQVLKEMPEGPI---IHESYEKLIPPKLREE 299
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK+ I F VP GE + VE +GE ++ISDG PYR ++ P +
Sbjct: 300 MKQKG---IVKFPSVFANLRVPAGEAISRVEGGRGEVVFHVISDGKLSPYRMRMVTPSFR 356
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ E L KG ++AD+ AI GSLD E DR
Sbjct: 357 NVILFEHLTKGARVADIPAIYGSLDYFPPEADR 389
>gi|11466264|ref|NP_049579.1| NADH dehydrogenase subunit 7 [Tetrahymena pyriformis]
gi|5306140|gb|AAD41924.1|AF160864_12 NADH dehydrogenase subunit 7 [Tetrahymena pyriformis]
Length = 442
Score = 346 bits (889), Expect = 3e-93, Method: Composition-based stats.
Identities = 199/425 (46%), Positives = 276/425 (64%), Gaps = 29/425 (6%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
++ K+ ++ +NFGPQHPAAHGVLRLIL+L+GEI ER DPHIGLLHRG+EKLIE + +LQ
Sbjct: 18 VNAKQIKTMNVNFGPQHPAAHGVLRLILQLNGEIAERFDPHIGLLHRGSEKLIEDRPYLQ 77
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIE-IPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+PYFDR DYV+ M QEHAY L +E LLG IR +Y E+ RIL+HLL V
Sbjct: 78 GMPYFDRFDYVSMMVQEHAYCLGIESLLGTTNYSATFTQIRTMYDELTRILNHLLAVACH 137
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-VEDIGCWCD 178
A+DVG+++ W FEEREKLM FYER G+RMHAA++RP V+ + +EDI +
Sbjct: 138 ALDVGSMSSVFWAFEEREKLMEFYERVCGARMHAAFYRPNEVNLNAVSSFLLEDILEFSR 197
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLR--KSQP 236
+F + LN++ ++LT N+I+KQR +NIGT + +G +GVM R G DLR K++
Sbjct: 198 NFFTTLNEMHNVLTYNKIWKQRLINIGTYSFQTCLDYGLTGVMARSCGIKRDLRLSKTET 257
Query: 237 YECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKI 296
Y Y L+F +G+HGDCYDR+L+RM EM ES+ I+ Q +N++ N + + + +
Sbjct: 258 YANYYYLNFRSYVGQHGDCYDRFLIRMNEMCESLNIVNQSINKISKYNNIKSIKNNSNIL 317
Query: 297 ----------VPPKR---------------ADMKRSMESLIHHFKLYTEGYHVPVGEVYA 331
+ P + SME LI+HFK +++G V G +
Sbjct: 318 NKDSFNRQTTILPHMVLNYLNKNDLNIKNTKNDYNSMEELINHFKFWSKGIKVEPGYTFQ 377
Query: 332 AVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVF 391
+VE+PKGEFGV ++SDG KPY+CK+R+P Y HLQ + + KGH LAD+ A++G++DIVF
Sbjct: 378 SVESPKGEFGVSMLSDGSAKPYKCKVRSPAYHHLQVLPKIGKGHFLADLVALVGTVDIVF 437
Query: 392 GEVDR 396
GEVDR
Sbjct: 438 GEVDR 442
>gi|237756345|ref|ZP_04584895.1| NADH-quinone oxidoreductase, subunit c/d [Sulfurihydrogenibium
yellowstonense SS-5]
gi|237691496|gb|EEP60554.1| NADH-quinone oxidoreductase, subunit c/d [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 576
Score = 346 bits (889), Expect = 3e-93, Method: Composition-based stats.
Identities = 162/393 (41%), Positives = 229/393 (58%), Gaps = 15/393 (3%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K+ +N+GP HP HG + + +LDGE V++ D IG LHRG EKL E + Q +PY
Sbjct: 198 KTSQIVLNWGPLHPGTHGTIWFLFDLDGEYVKQCDIIIGQLHRGVEKLGENVNWQQFIPY 257
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY+A +N+ HAY LA EK+LGIE+P + + IR + +E+ RI SHLL + T A+D+G
Sbjct: 258 TDRMDYIAAINENHAYVLAAEKMLGIEVPEKAKWIRTMMAELSRINSHLLWLGTYALDLG 317
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
ALT L+ F EREK+M E +G+R YFR GGV D+P ++ I P +
Sbjct: 318 ALTMFLYTFREREKIMDIIEGITGARFTINYFRIGGVFADLPYGALDAIEHLIKDLPQRI 377
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
ND LLT NRI+ RN ++ + ED + +G +G + RGSG +D+RK Y+ Y E++
Sbjct: 378 NDYETLLTRNRIWLSRNKDVCIITEEDVYQYGLTGAVARGSGVPYDVRKIDKYDAYGEVE 437
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDIP+G+ GD YDRYLVRM EMR+S++II QCV +L +K P P K
Sbjct: 438 FDIPVGEKGDSYDRYLVRMEEMRQSIRIIAQCVAKLRKMSKNDPYFFQTPDEKKLKVTID 497
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGN-KPYRCKIRAPGYA 363
R M +P GE YA+ + P+GE G Y+ + K +R +IR+ +
Sbjct: 498 GRGM--------------KLPAGETYASSDNPRGELGFYIYNKKDGLKAHRMRIRSGAFY 543
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ G +AD +L ++D V GE DR
Sbjct: 544 NLQVFTKAIIGRPIADAITLLSTIDPVVGETDR 576
>gi|225677935|gb|EEH16219.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Paracoccidioides
brasiliensis Pb03]
Length = 447
Score = 346 bits (889), Expect = 3e-93, Method: Composition-based stats.
Identities = 203/395 (51%), Positives = 253/395 (64%), Gaps = 36/395 (9%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ +K R +T+NFGPQHPAAHGVLRLILEL+GE + R DPH+GLLHRGTEKLIE KT++QA
Sbjct: 89 NGRKIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYMQA 148
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+PYFDRLDYV+ M E ++LAVEKLL IEIP R + IR ++ EI RIL+HL++V + AM
Sbjct: 149 LPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKWIRTMFGEITRILNHLMSVLSHAM 208
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
DVGALTP LWGFEEREKLM FYER SG+R+HAAY RPGGVHQDIP L++DI W
Sbjct: 209 DVGALTPFLWGFEEREKLMEFYERVSGARLHAAYIRPGGVHQDIPLGLLDDIYQWATHS- 267
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+ KL++ SG + + R+ P
Sbjct: 268 ---------------------ATASTKLKNCSPKIVSGKLE-----PRNRRRFLP----- 296
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
C L M + + R R+ GPV D KI PP R
Sbjct: 297 --QRLSITALAESCSVAPLFHG--MSANPNLRRLRPGRIRRAYAAGPVRVEDYKISPPPR 352
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
A MK +ME+LIHHF L+T+GY VP GE Y+A+EAPKGE GV+L+SDG +PYRCKIRAPG
Sbjct: 353 AAMKENMEALIHHFLLFTKGYAVPPGETYSAIEAPKGEMGVFLVSDGSERPYRCKIRAPG 412
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AHL + + +GH LAD AI+G++D+VFGEVDR
Sbjct: 413 FAHLSCFDQISRGHLLADAVAIIGTMDLVFGEVDR 447
>gi|296271390|ref|YP_003654022.1| NADH dehydrogenase [Thermobispora bispora DSM 43833]
gi|296094177|gb|ADG90129.1| NADH dehydrogenase (quinone) [Thermobispora bispora DSM 43833]
Length = 392
Score = 346 bits (889), Expect = 3e-93, Method: Composition-based stats.
Identities = 132/393 (33%), Positives = 210/393 (53%), Gaps = 26/393 (6%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ + +N GPQHP+ HGVLRL L LDGE + + +P +G +HRG EKL E + + Q +
Sbjct: 25 ELATEDMVLNIGPQHPSTHGVLRLRLTLDGERIVQAEPIVGYMHRGAEKLFEVRDYRQII 84
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
+R D+++ E LAVE++LG+E+P R R L +E+ R+L+HL+ + + ++
Sbjct: 85 VLANRHDWLSAFANELGVVLAVERMLGMEVPPRAVWARTLLAELNRVLNHLMFLGSYPLE 144
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA+TP + F ERE L E SG RMH + R GG+ +D+P ++ + +
Sbjct: 145 LGAITPVFYAFRERETLQRVMEEISGGRMHYMFNRVGGLKEDLPLGWLDRVTAAVAAIRR 204
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L D+ +L+ GN IF R IG + + +G SG + R SG +DLR+ +PY Y E
Sbjct: 205 RLPDLEELVAGNEIFLARTKGIGVLDRDTILQYGVSGPIARASGVDFDLRRDEPYLAYGE 264
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
L + GDC R+ V + +++ S+ + CV RL GP++ PK++
Sbjct: 265 LPVKVVTRTAGDCLARFEVLLEQVKVSLDLADACVARLRE-LPPGPINQRLPKVL----- 318
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
VP G YA E P G G YL+S G P+R K+R+ +
Sbjct: 319 --------------------KVPEGHTYAWTENPLGINGYYLVSRGDKTPWRLKLRSASF 358
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
++Q + + G+ ++D+ AILGS+ V G++D
Sbjct: 359 NNVQVLREVLPGNLVSDMIAILGSMFFVVGDID 391
>gi|15027641|ref|NP_149375.1| NADH dehydrogenase subunit 7 [Tetrahymena thermophila]
gi|15011477|gb|AAK77572.1|AF396436_12 NADH dehydrogenase subunit 7 [Tetrahymena thermophila]
Length = 442
Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats.
Identities = 198/425 (46%), Positives = 271/425 (63%), Gaps = 29/425 (6%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
++ K+ ++ +NFGPQHPAAHGVLRLIL+L+GEI ER DPHIGLLHRG+EKLIE + +LQ
Sbjct: 18 VNSKQIKTMNVNFGPQHPAAHGVLRLILQLNGEIAERFDPHIGLLHRGSEKLIEDRPYLQ 77
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIE-IPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+PYFDR DYV+ M QEHAY L +E LLG IR +Y E+ RIL+HLL V
Sbjct: 78 GMPYFDRFDYVSMMVQEHAYCLGIESLLGTTNYSATFTQIRTMYDELTRILNHLLAVACH 137
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELV-EDIGCWCD 178
A+DVG+++ W FEEREKLM FYER G+RMHAA++RP V+ + + EDI +
Sbjct: 138 ALDVGSMSSVFWAFEEREKLMEFYERVCGARMHAAFYRPNEVNLNAVSSFLMEDILEFSR 197
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLR--KSQP 236
+F + LN++ ++LT N+I+KQR +NIGT + +G +GVM R G DLR K++
Sbjct: 198 NFFTTLNEMHNVLTYNKIWKQRLINIGTYSFQTCLDYGLTGVMARSCGLKRDLRLSKTET 257
Query: 237 YECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKI 296
Y Y L+F G+HGDCYDR+L+RM EM ES+ I+ Q +N++ N + ++ +
Sbjct: 258 YANYYYLNFRSYTGQHGDCYDRFLIRMNEMCESLNIVNQSINKISKFNNIVSINTKKNIL 317
Query: 297 VPPKRADM-------------------------KRSMESLIHHFKLYTEGYHVPVGEVYA 331
SME LI HFK +++G V G Y
Sbjct: 318 NKENFNRQTTVLPHLVLSYLNKNDYNLKNTKNDYNSMEELITHFKYWSKGLKVESGYTYQ 377
Query: 332 AVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVF 391
+VE+PKGEFGV ++SDG NKPY+CK+R+P HLQ + + KGH LAD+ A++G++DIVF
Sbjct: 378 SVESPKGEFGVSMLSDGSNKPYKCKVRSPALHHLQVLPKIGKGHFLADLVALVGTVDIVF 437
Query: 392 GEVDR 396
GE+DR
Sbjct: 438 GEIDR 442
>gi|332662316|ref|YP_004445104.1| NAD(P)H-quinone oxidoreductase subunit H [Haliscomenobacter
hydrossis DSM 1100]
gi|332331130|gb|AEE48231.1| NAD(P)H-quinone oxidoreductase subunit H [Haliscomenobacter
hydrossis DSM 1100]
Length = 404
Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats.
Identities = 146/393 (37%), Positives = 220/393 (55%), Gaps = 1/393 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ + T+N GP HPA HG+ + +L++DGE + + IG +HR EKL E + + Q
Sbjct: 12 QEEKQYNTLNLGPTHPATHGIFQNVLQMDGEFIVSGEATIGYIHRAFEKLAEHRPYYQIT 71
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DRL+Y + + L VEKLLG++ P R +RV+ E+ RI HL+ + +D
Sbjct: 72 PITDRLNYCSSPINNIGWHLTVEKLLGVQTPKRVDYMRVMIMELARITDHLICNSVIGVD 131
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
GALT ++ F++RE + YE+ GSR+ R GG +D ++ I + D FP
Sbjct: 132 TGALTGFVYVFQQREHVYEIYEQICGSRLTTNIGRIGGFERDFDDNVMRRIRKFLDEFPK 191
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ LL NRIF R + +G + +A +GF+G +R +G +D+R PY Y +
Sbjct: 192 VWKEFEGLLARNRIFMDRTIGVGGIDAMEALDYGFTGPNLRAAGIDYDVRVMNPYSSYQD 251
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF IPIG+ GD YDR+ VR E+ +S+ I+ Q +L+ G A P+ P +
Sbjct: 252 FDFTIPIGQSGDVYDRFCVRNEEIWQSLSILEQAYAKLMA-MPQGEYFAPVPEFYLPPKQ 310
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
D+ ME+LI HFK+ +P GEVY AVE GE G YLISDGG +PYR R P +
Sbjct: 311 DVYTKMEALIWHFKIVMGEVEIPKGEVYHAVEGGNGELGFYLISDGGRQPYRLHFRRPCF 370
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ QA + KG L+D + S++++ GE+D
Sbjct: 371 IYYQAYPEMIKGSMLSDAILTMSSMNVIAGELD 403
>gi|114329823|ref|YP_740727.1| NADH dehydrogenase subunit 7 [Tetrahymena malaccensis]
gi|114150056|gb|ABI51636.1| NADH dehydrogenase subunit 7 [Tetrahymena malaccensis]
Length = 442
Score = 346 bits (888), Expect = 4e-93, Method: Composition-based stats.
Identities = 199/425 (46%), Positives = 275/425 (64%), Gaps = 29/425 (6%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
++ K+ ++ +NFGPQHPAAHGVLRLIL+L+GEI ER DPHIGLLHRG+EKLIE + +LQ
Sbjct: 18 VNSKQIKTMNVNFGPQHPAAHGVLRLILQLNGEIAERFDPHIGLLHRGSEKLIEDRPYLQ 77
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIE-IPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+PYFDR DYV+ M QEHAY L +E LLG IR +Y E+ RIL+HLL V
Sbjct: 78 GMPYFDRFDYVSMMVQEHAYCLGIESLLGTTNYSATFTQIRTMYDELTRILNHLLAVACH 137
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELV-EDIGCWCD 178
A+DVG+++ W FEEREKLM FYER G+RMHAA++RP V+ + + EDI +
Sbjct: 138 ALDVGSMSSVFWAFEEREKLMEFYERVCGARMHAAFYRPNEVNLNAVSSFLMEDILEFSR 197
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLR--KSQP 236
+F + LN++ ++LT N+I+KQR +NIGT + +G +GVM R G DLR K++
Sbjct: 198 NFFTTLNEMHNVLTYNKIWKQRLINIGTYSFQTCLDYGLTGVMARSCGLKRDLRLSKTET 257
Query: 237 YECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKI 296
Y Y L+F G+HGDCYDR+L+RM EM ES+ I+ Q +N++ N + ++ +
Sbjct: 258 YANYYYLNFRSYTGQHGDCYDRFLIRMNEMCESLNIVNQSINKISKYNNIVSLNNNKAIY 317
Query: 297 ----------VPPKR---------------ADMKRSMESLIHHFKLYTEGYHVPVGEVYA 331
+ P + SME LI+HFK +++G V G Y
Sbjct: 318 NNDNFNRQTTILPHLVLSYLNKNDYNLKNTKNDYNSMEELINHFKYWSKGLKVESGYTYQ 377
Query: 332 AVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVF 391
+VE+PKGEFGV ++SDG NKPY+CK+R+P HLQ + + KGH LAD+ A++G++DIVF
Sbjct: 378 SVESPKGEFGVSMLSDGSNKPYKCKVRSPALHHLQVLPKIGKGHFLADLVALVGTVDIVF 437
Query: 392 GEVDR 396
GE+DR
Sbjct: 438 GEIDR 442
>gi|227535968|ref|ZP_03966017.1| NADH dehydrogenase (quinone) [Sphingobacterium spiritivorum ATCC
33300]
gi|300771674|ref|ZP_07081549.1| NADH dehydrogenase (quinone) subunit D [Sphingobacterium
spiritivorum ATCC 33861]
gi|227244211|gb|EEI94226.1| NADH dehydrogenase (quinone) [Sphingobacterium spiritivorum ATCC
33300]
gi|300761663|gb|EFK58484.1| NADH dehydrogenase (quinone) subunit D [Sphingobacterium
spiritivorum ATCC 33861]
Length = 411
Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats.
Identities = 137/394 (34%), Positives = 212/394 (53%), Gaps = 1/394 (0%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ + T+N GP HPA HGV + ++++DGE + IG +HR EK+ E + F Q
Sbjct: 18 NDPQDELITLNIGPTHPATHGVFQNVVQIDGERIVSGVSTIGYIHRAFEKIAEHRPFYQI 77
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
P DRL+Y + + + VEKLL IEIP R Q +RV+ E+ RI H++ +
Sbjct: 78 TPLTDRLNYCSSPINNMGWHMTVEKLLNIEIPKRVQYMRVIVMELARIADHIICNGILGV 137
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D GA + L+ +ERE + +E G+R+ R GG +D I + + FP
Sbjct: 138 DTGAFSGFLYVMQEREFIYEIFEEICGARLTTNIGRIGGFERDFNDVAFLKIREFLERFP 197
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
L + ++ NRIF +R + V E A + +SG ++R +G +D+R +PY Y
Sbjct: 198 PVLTEFEEMFVRNRIFIERTSGVAAVTPEQALSYSWSGPILRATGIDYDVRAQEPYCSYE 257
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
E DF++P+G GD YDR++VR EMR+S++II Q + ++ + A P+ P +
Sbjct: 258 EFDFEVPVGTTGDVYDRFMVRNAEMRQSMRIIEQALEKI-AREPADVFHADVPEFYLPPK 316
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +ME+LI+HFK+ + P EVY AVE GE G YLI DGG PYR R P
Sbjct: 317 EQVYTNMEALIYHFKIVMGEWETPKAEVYHAVEGANGELGFYLIHDGGRTPYRLHFRRPS 376
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ + Q + G ++D + SL+++ GE+D
Sbjct: 377 FVNYQMFAPMSSGMLISDAIINMSSLNVIAGELD 410
>gi|312885500|ref|ZP_07745138.1| NADH dehydrogenase subunit D [Mucilaginibacter paludis DSM 18603]
gi|311301968|gb|EFQ78999.1| NADH dehydrogenase subunit D [Mucilaginibacter paludis DSM 18603]
Length = 395
Score = 345 bits (886), Expect = 5e-93, Method: Composition-based stats.
Identities = 169/398 (42%), Positives = 230/398 (57%), Gaps = 30/398 (7%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GPQHP+ HGVLRL L DGEIV V PH+G LHR EK E T+ Q +P+ D
Sbjct: 20 DEMVLNMGPQHPSTHGVLRLELITDGEIVREVIPHMGYLHRCFEKHAERLTYQQTIPFTD 79
Query: 67 RLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
R+DY+A MN HA+ + VE+++GI EIP R + IRVL E+ RI SHL+ + T +D+G
Sbjct: 80 RMDYLASMNNSHAFVMGVERMMGIDTEIPKRVEYIRVLVCEMNRIASHLIAIGTYGIDIG 139
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A TP LW F +RE +M E ASGSRM Y GG+ D+P E + F +
Sbjct: 140 AFTPFLWCFRDREHIMGMLEWASGSRMLYNYIWVGGLFYDLPVGFEERCLEFIRYFKPKM 199
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+++ LLT N+IF +R N+G + L+ A +G SG M+RGSG +DLR+ Y Y ELD
Sbjct: 200 VELNQLLTDNQIFIKRTANVGILPLDVAINYGCSGPMLRGSGLKYDLRRIDGYSAYPELD 259
Query: 245 FDIPIGK-----HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
FD+P+G GDC+DRY VR+ E+ ES+KI+ QCV RL + K P DP+ P
Sbjct: 260 FDVPVGTGLMGAVGDCWDRYKVRVDEIEESLKIMEQCVARLQKELKRTP--DFDPRAKLP 317
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGN-KPYRCKIR 358
++ + Y E P+GE G Y I+DG P+R K R
Sbjct: 318 RK--------------------ITPKPQDFYMRAENPRGELGFYFIADGKTEIPFRVKSR 357
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AP + +L + + KG +AD+ AI+GS+D + GEVDR
Sbjct: 358 APSFCNLSVLSEISKGVLIADLVAIVGSIDFMLGEVDR 395
>gi|225848102|ref|YP_002728265.1| NADH-quinone oxidoreductase subunits chi/delta
[Sulfurihydrogenibium azorense Az-Fu1]
gi|225643899|gb|ACN98949.1| NADH-quinone oxidoreductase subunit c/d (nadhdehydrogenase i
subunit c/d) (ndh-1 subunit c/d) (Nuo3/nuo4)
[Sulfurihydrogenibium azorense Az-Fu1]
Length = 577
Score = 345 bits (886), Expect = 6e-93, Method: Composition-based stats.
Identities = 166/393 (42%), Positives = 230/393 (58%), Gaps = 15/393 (3%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K+ +N+GP HP HG + + +LDGE V++ D IG LHRG EKL E + Q +PY
Sbjct: 199 KTSQIVLNWGPLHPGTHGTIWFLFDLDGEYVKQCDIIIGQLHRGVEKLGENVNWQQFIPY 258
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY+A +N+ HAY LA EKLLGIEIP + + IR + +E+ RI SHLL + T A+D+G
Sbjct: 259 TDRMDYIAAINENHAYVLAAEKLLGIEIPEKAKWIRTMMAELSRINSHLLWLGTYALDLG 318
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
ALT L+ F EREK+M E SG+R YFR GGV D+P ++ I P +
Sbjct: 319 ALTMFLYTFREREKIMDIIEGISGARFTINYFRIGGVFADLPYGALDAIEHLIKDLPERI 378
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
ND LLT NRI+ RN ++ + ED + +G +G + RGSG +D+RK Y+ Y E++
Sbjct: 379 NDYETLLTRNRIWLSRNKDVCIITEEDVYEYGLTGAVARGSGVPYDVRKIDKYDAYGEVE 438
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDIP+G+ GD YDRYLVRM EMR+S++II QCV +L +K P P K
Sbjct: 439 FDIPVGETGDSYDRYLVRMEEMRQSIRIIEQCVAKLRRMSKNDPYFFQTPDEKKLKVTID 498
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGN-KPYRCKIRAPGYA 363
R M +P GEVYA+ + P+GE G Y+ + K +R +IR+ +
Sbjct: 499 GRGM--------------KLPAGEVYASSDNPRGELGFYIYNKKDGLKAHRMRIRSGAFY 544
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+LQ G +AD +L ++D V GE DR
Sbjct: 545 NLQVFTKAIIGRPIADAITLLSTIDPVVGETDR 577
>gi|124009232|ref|ZP_01693913.1| NADH-ubiquinone oxidoreductase 49 kda subunit [Microscilla marina
ATCC 23134]
gi|123985217|gb|EAY25151.1| NADH-ubiquinone oxidoreductase 49 kda subunit [Microscilla marina
ATCC 23134]
Length = 427
Score = 345 bits (886), Expect = 6e-93, Method: Composition-based stats.
Identities = 161/399 (40%), Positives = 221/399 (55%), Gaps = 30/399 (7%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
S +N GPQHP+ HGVLRL L +GE + V PH+G LHR EK E + Q +PY
Sbjct: 51 SEEMVLNLGPQHPSTHGVLRLELITNGEYIVDVVPHLGYLHRCFEKHAEALPYNQIIPYV 110
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+DY+A MN EHAYA+ VEK+LGI +IP R + IRVL +E+ R+ SH + + T +D+
Sbjct: 111 DRMDYIAAMNSEHAYAMGVEKMLGISDKIPKRVEYIRVLVAELNRLASHFVALGTYGVDI 170
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G+ T +W +RE ++ E SG+RM Y GG+ D+P E +
Sbjct: 171 GSFTVFMWMMRDREHILRLLEWLSGARMLYNYIWVGGLFYDLPVGFEERCAEFVKYLKPK 230
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + +L N+IF QR +G + L+ A +G SG M+R SG +DLR+ Y Y EL
Sbjct: 231 IIETQQILIENKIFVQRTAKVGALPLDLAINYGVSGPMLRASGLKYDLRRIDGYSVYPEL 290
Query: 244 DFDIPIGK-----HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
DFDIP+GK GDC+DR VR+ E ES KII QC+ RL K DP+ +
Sbjct: 291 DFDIPVGKGEMGTQGDCWDRTWVRLQECFESAKIIEQCITRLTTDLK--RTRDFDPQALV 348
Query: 299 PKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG-GNKPYRCKI 357
PK+ + Y E PKGE G Y +DG +KP+RCK
Sbjct: 349 PKK--------------------IRPKANDFYVRAENPKGELGYYFRADGRSDKPFRCKA 388
Query: 358 RAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
R+ + +L + + +G +AD+ AI+GSLDIV GEVDR
Sbjct: 389 RSCCFVNLSVLPEISRGTMIADLVAIVGSLDIVLGEVDR 427
>gi|255019941|ref|ZP_05292015.1| NADH dehydrogenase I, B/C/D subunits [Acidithiobacillus caldus ATCC
51756]
gi|254970600|gb|EET28088.1| NADH dehydrogenase I, B/C/D subunits [Acidithiobacillus caldus ATCC
51756]
Length = 565
Score = 345 bits (886), Expect = 6e-93, Method: Composition-based stats.
Identities = 142/392 (36%), Positives = 215/392 (54%), Gaps = 4/392 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ +N GP HP HG+LR IL L GE + VDP IG HRG EK+ E ++ +PY
Sbjct: 178 DGETMVLNVGPHHPGTHGILRYILRLRGEEIVAVDPDIGYHHRGVEKIAEGHSYHNFIPY 237
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY+ + E Y A+EKL I +P R + IR L +E+ RI SHL+ + + D+G
Sbjct: 238 TDRVDYLGGVLGEWPYLRAIEKLAAIHVPERAEGIRTLLAELCRISSHLVWLGSYGNDLG 297
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
+ P + F +R L+ ER +G R+H +FR GGV D+P D+ L
Sbjct: 298 TMGPAFYAFRDRAWLLELMERFTGGRLHPQFFRIGGVADDLPEGWRSDLLALLRRIEKGL 357
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
D L N IF+ R +G V E A W + +++R +G A+DLRK+ PY Y +D
Sbjct: 358 PDSERLTVENPIFRARTEGVGVVTAEQAERWCATSILLRSTGRAFDLRKAAPYGLYDRVD 417
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F++P+ GD + R + + E+RES++I+RQ + GP A D + ++
Sbjct: 418 FEVPVTTAGDAWSRTWLHIAEIRESIRILRQLAD----ILPEGPTLACDAPLALMPKSRT 473
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
+E+LIHHF+ + + P G E+ +G G +++SDGG KPYR ++R +AH
Sbjct: 474 LLDIETLIHHFEQMADAFGPPPGSALGLGESARGLLGYFVVSDGGPKPYRLRVRTGSFAH 533
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+Q + L +G +L D A +GSLD V ++DR
Sbjct: 534 VQMITELGRGLRLPDFIATIGSLDYVLADLDR 565
>gi|300773782|ref|ZP_07083651.1| NADH dehydrogenase I [Sphingobacterium spiritivorum ATCC 33861]
gi|300759953|gb|EFK56780.1| NADH dehydrogenase I [Sphingobacterium spiritivorum ATCC 33861]
Length = 398
Score = 345 bits (886), Expect = 6e-93, Method: Composition-based stats.
Identities = 169/399 (42%), Positives = 235/399 (58%), Gaps = 30/399 (7%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
S+ IN GPQHP+ HGVLRL L DGEIV+ + PH+G LHR +K E+ + + +P+
Sbjct: 22 SQEMVINMGPQHPSTHGVLRLELITDGEIVKDIIPHLGYLHRCFDKHAESVNYTKTIPFT 81
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DRLDY+A MN HAY + VE++LG++ IP R + IRVL E+ RI SHL+ + T +D+
Sbjct: 82 DRLDYLASMNNSHAYVMGVERMLGLDSRIPKRVEYIRVLVCELNRIASHLIAIGTYGIDI 141
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP +W F +RE +M E ASGSRM Y GG+ D+P E + + F
Sbjct: 142 GAFTPFMWCFRDREHIMNMLEWASGSRMLYNYIWIGGLFYDLPVGFEERCAEFVNYFKPK 201
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L ++ +LLT N+IF R NIG + + A +G SG M+R SG WDLR+ Y Y EL
Sbjct: 202 LVELDELLTQNQIFISRTANIGALPADVAINYGCSGPMLRASGIKWDLRRVDGYSVYPEL 261
Query: 244 DFDIPI-----GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
+FDIP+ G+ GDC+DRY VR+ E++ESV+I+ QC+ RL + + DP+ +
Sbjct: 262 EFDIPVGKGEMGQLGDCWDRYKVRVDEIKESVRIVEQCLERL--QKDFQRTTDFDPRALV 319
Query: 299 PKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLIS-DGGNKPYRCKI 357
PK+ ++K + Y E PKGE G Y ++ D + P R K
Sbjct: 320 PKKVNIK--------------------AQDYYVRAENPKGELGFYFVAQDKTDIPKRVKS 359
Query: 358 RAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
R P + +L + L KG +AD+ AILGS+DIV GEVDR
Sbjct: 360 RGPSFNNLSVLPELGKGVLIADLIAILGSIDIVLGEVDR 398
>gi|212223422|ref|YP_002306658.1| Hydrogenase 4, component G or formate hydrogen lyase, subunit 5
[Thermococcus onnurineus NA1]
gi|212008379|gb|ACJ15761.1| Hydrogenase 4, component G or formate hydrogen lyase, subunit 5
[Thermococcus onnurineus NA1]
Length = 583
Score = 345 bits (885), Expect = 7e-93, Method: Composition-based stats.
Identities = 116/391 (29%), Positives = 177/391 (45%), Gaps = 32/391 (8%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETK-TFLQAVPYF 65
+ T+ GP H A + + GE V VD HRG EK+ E + T+ Q +
Sbjct: 193 DTMTVPIGPYHLALDEPAHFRIFVKGETVVDVDYRGFYSHRGIEKIGEGRLTYNQVLFIA 252
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
+R+ + +YA AVE + G+EIP R IR + EI RI SH+L A G
Sbjct: 253 ERICGICGFQHSTSYAQAVENIAGVEIPERAMYIRTIMLEIERIHSHMLWAGVAAHLTGF 312
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
T + + RE +M ER +G+R GGV +D E I +
Sbjct: 313 DTGFMHAWRVREPVMWLAERLTGNRKTYGINIVGGVRRDFLDYRKEMIMEKIKELRRQVE 372
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ ++ TG F +R +G + + A + G R SG D+R+ QP+ Y +LDF
Sbjct: 373 EFIEIATGTATFVKRAEGVGILPYKVAKAYSVLGPNGRASGRNIDIRRDQPFAAYKDLDF 432
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+P+ K GD R+L+RM E+ ES+ II Q ++++ G + P+
Sbjct: 433 KVPVYKEGDVLARFLIRMDEVLESIWIIEQAIDQMPGGDVFVPI---------------- 476
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
G E EAP+GE Y+++D NK YR K+RAP Y +L
Sbjct: 477 ---------------GELPEYEEALGYSEAPRGEVIHYVMTDKKNKVYRWKVRAPTYNNL 521
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A+ + KG+ +AD I+ S+D + +R
Sbjct: 522 PAVPEMLKGYSVADAPLIIASIDPCYSCTER 552
>gi|90579191|ref|ZP_01235001.1| NADH dehydrogenase I, B/C/D subunits [Vibrio angustum S14]
gi|90440024|gb|EAS65205.1| NADH dehydrogenase I, B/C/D subunits [Vibrio angustum S14]
Length = 565
Score = 345 bits (885), Expect = 8e-93, Method: Composition-based stats.
Identities = 146/394 (37%), Positives = 223/394 (56%), Gaps = 3/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K+ S +N GP HP GV+RL +++ GE +E +D IG HRG EK+ E TF +
Sbjct: 175 KQDDGSMVLNIGPNHPGTDGVIRLKVKMKGEFIEDLDQEIGFHHRGAEKIAERHTFHNYI 234
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR+DY+ + E Y L +E + GIE+P R + +R++ E+ RI SHL+ + +
Sbjct: 235 PYTDRIDYLGGVAGELPYLLGLEAMTGIEVPERAKTMRIMLCELFRISSHLVWFGSITHN 294
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+G + P + F EREK+ E G RMH A+FR GGV QD+P E + C
Sbjct: 295 LGGMAPAFYAFTEREKIFDVIELICGGRMHPAFFRIGGVSQDLPDGWEEKVEHACQGIEQ 354
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ D+ L+T + IFK R NI A WG +G +R +G +D+RK PY Y +
Sbjct: 355 LVPDLEKLMTNSMIFKVRTQNIAVYSQSMALDWGLTGPNLRATGINFDMRKDFPYMGYED 414
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DFD+P+G+ GD Y R ++R+ E+ ES+KIIRQ R+ ++ + P P++
Sbjct: 415 YDFDVPVGQDGDAYTRTVLRVQEVVESLKIIRQAAARMPEGPI---LADNAPNFGFPRKQ 471
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ R +E+LIH F G++ PV E + A E KG + IS+G PYR +IR P +
Sbjct: 472 NALRDIETLIHSFVDTGRGFNFPVAETFYATETAKGVTSYHTISNGTGCPYRVRIRTPSF 531
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H Q+++ + KG L+++ ++GS+D V ++DR
Sbjct: 532 THFQSVKAVSKGDLLSNIICLIGSIDYVLADIDR 565
>gi|183220689|ref|YP_001838685.1| NADH-quinone oxidoreductase subunit D [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Paris)']
gi|189910790|ref|YP_001962345.1| NADH dehydrogenase subunit D [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|218534411|sp|B0SFT7|NUOD_LEPBA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|218534412|sp|B0SP85|NUOD_LEPBP RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|167775466|gb|ABZ93767.1| NADH dehydrogenase (ubiquinone), D chain [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
gi|167779111|gb|ABZ97409.1| NADH-quinone oxidoreductase, chain D [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Paris)']
Length = 406
Score = 345 bits (885), Expect = 8e-93, Method: Composition-based stats.
Identities = 145/385 (37%), Positives = 222/385 (57%), Gaps = 4/385 (1%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
+N GP HPA HG+L+ ++++DGE V + IG +HR EKL E + Q + DR++Y
Sbjct: 25 VNLGPSHPATHGILQNVIQIDGERVVDTESVIGYVHRCFEKLGERYDYNQFLVCTDRMNY 84
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
V+ + L VEK++ I++P R +R++ SE+ RI+ H++ +D+GA + L
Sbjct: 85 VSTPLNNIGWILTVEKMMQIQVPDRVTYVRMIISELSRIMDHIICNGIMGVDLGAFSGLL 144
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
F RE + E+ +G+R+ + R GG+ +DI PE +I AL++ +L
Sbjct: 145 HLFHHRENIYQILEKLTGARLTTTFCRVGGMERDIYPEFQTEIKLILKGLKPALDEFEEL 204
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
L N+IF +R IG + + A +GFSG +R +G WD+RK PY Y +++FDIP+G
Sbjct: 205 LIRNKIFNERTKGIGGISADRAIAYGFSGPNLRAAGVPWDVRKDDPYMFYDKVNFDIPVG 264
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
+ G DR LVRM EMR+S+KII Q ++ + GP A P P + + +ME
Sbjct: 265 EDGSALDRTLVRMEEMRQSMKIIEQLIDGI----PEGPYHADVPHSFLPPKDRVYHNMEE 320
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
LI+HFK+ G VP GE Y A EA GE G Y++S+G P+R +R P + + QA
Sbjct: 321 LIYHFKIIMHGVKVPPGEYYHATEAANGELGFYVVSEGDKSPWRVHVRRPCFWYYQAFPE 380
Query: 371 LCKGHQLADVSAILGSLDIVFGEVD 395
+ KG LAD A + SL+++ GE+D
Sbjct: 381 MVKGGLLADTIATMSSLNVIAGELD 405
>gi|114329869|ref|YP_740772.1| NADH dehydrogenase subunit 7 [Tetrahymena paravorax]
gi|114150102|gb|ABI51681.1| NADH dehydrogenase subunit 7 [Tetrahymena paravorax]
Length = 443
Score = 345 bits (885), Expect = 9e-93, Method: Composition-based stats.
Identities = 201/425 (47%), Positives = 274/425 (64%), Gaps = 30/425 (7%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ K+ ++ +NFGPQHPAAHGVLRLIL+L+GEI ER DPHIGLLHRG+EKLIE + +LQ
Sbjct: 19 NAKQIKTMNLNFGPQHPAAHGVLRLILQLNGEIAERFDPHIGLLHRGSEKLIEDRPYLQG 78
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIE-IPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PYFDR DYV+ M QEHAY L +E LLG IR ++ E+ RIL+HLL V A
Sbjct: 79 MPYFDRFDYVSMMVQEHAYCLGIESLLGTTNYSATFTQIRTMFDELTRILNHLLAVACHA 138
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQD-IPPELVEDIGCWCDS 179
+DVG+++ W FEEREK+M FYER G+RMHAA++RP V+ + I L+EDI + +
Sbjct: 139 LDVGSMSSVFWAFEEREKIMEFYERVCGARMHAAFYRPNEVNLNAISTFLLEDILEFSRN 198
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLR--KSQPY 237
F + LN++ ++LT N+I+KQR VNIGT + +G +GVM R G DLR K++ Y
Sbjct: 199 FFTTLNEMHNVLTYNKIWKQRLVNIGTYSYQTCLDYGLTGVMARSCGLKRDLRLSKTESY 258
Query: 238 ECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRL------------LGKNK 285
Y L+F IG+HGDCYDR+L+RM EM ES+ I+ Q +N++
Sbjct: 259 ANYYYLNFRSYIGQHGDCYDRFLIRMNEMAESLNIVNQSINKISKFNSNKFILNDNNNIL 318
Query: 286 VGPVSASDPKIVPPKR--------------ADMKRSMESLIHHFKLYTEGYHVPVGEVYA 331
I+P + SME LI+HFK +++G V G +
Sbjct: 319 NNDNFNRQTNILPHLVLNYLNKNDYSNKITKNDYNSMEELINHFKFWSKGLKVNSGYTFQ 378
Query: 332 AVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVF 391
+VE+PKGEFGV ++SDG NKPY+CK+R+P + HLQ M + KGH LAD+ A++G++DIVF
Sbjct: 379 SVESPKGEFGVSMLSDGSNKPYKCKVRSPAFHHLQVMPKIGKGHFLADLVALVGTVDIVF 438
Query: 392 GEVDR 396
GE+DR
Sbjct: 439 GEIDR 443
>gi|283853891|ref|ZP_06371104.1| NADH-ubiquinone oxidoreductase chain 49kDa [Desulfovibrio sp.
FW1012B]
gi|283570714|gb|EFC18761.1| NADH-ubiquinone oxidoreductase chain 49kDa [Desulfovibrio sp.
FW1012B]
Length = 409
Score = 345 bits (884), Expect = 9e-93, Method: Composition-based stats.
Identities = 115/408 (28%), Positives = 188/408 (46%), Gaps = 20/408 (4%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
+ FGPQHP L L L ++ E V P +G +HRG E+L E + F Q + +R
Sbjct: 3 RTILPFGPQHPVLPEPLHLKLTIENETVIEALPTLGYVHRGLERLCEIRDFNQMIQIVER 62
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ + Y VE+++G+E+P R + +R ++ E+ R+ SHLL + A G +
Sbjct: 63 VCGICSCLHALCYCEGVEQIMGVEVPRRAKYLRTIWGELHRMHSHLLWLGLFADAFGFES 122
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
+ + RE++M E G+R+ + GGV +D+ PE I + +
Sbjct: 123 LFMQFWRVRERIMDIMEATCGNRVVVSVNVIGGVRRDLSPEQCLWIEQQLALSEKEIKQL 182
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ + K+R V IG + E A+ G G M+RGSG A D R++ Y + EL F+
Sbjct: 183 QTTILNDYTVKKRTVGIGVLSKEKAYQLGAVGPMLRGSGWAQDARQTG-YAAFDELGFEP 241
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGK----NKVGPVSASDPK-IVPPKRA 302
+ GD Y R VR E +S+ I+R + R+ N G + P+ +V +R
Sbjct: 242 VVEYGGDSYARCAVRFRETLQSIDIVRLAIARMPAGETSVNVEGAMEDDTPRPVVAGERR 301
Query: 303 DMKRSMESLIHHFKLYTEGYHV--------------PVGEVYAAVEAPKGEFGVYLISDG 348
D+ ++ HH ++ P GE VE P+GE Y+ +G
Sbjct: 302 DIMQAYNRDKHHKITAAPPPNLDLPTGLVAAKVKGKPDGEAVTRVEQPRGELMYYIKGNG 361
Query: 349 GNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
R +IR P +A++ + + G +LADV I+ S+D +R
Sbjct: 362 SKNMERVRIRTPTFANIPPLLAILPGCELADVPVIVLSIDPCISCTER 409
>gi|89073315|ref|ZP_01159845.1| NADH dehydrogenase I, B/C/D subunits [Photobacterium sp. SKA34]
gi|89051025|gb|EAR56489.1| NADH dehydrogenase I, B/C/D subunits [Photobacterium sp. SKA34]
Length = 565
Score = 345 bits (884), Expect = 1e-92, Method: Composition-based stats.
Identities = 145/394 (36%), Positives = 223/394 (56%), Gaps = 3/394 (0%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K+ S +N GP HP GV+RL +++ GE +E +D IG HRG EK+ E TF +
Sbjct: 175 KQDDGSMVLNIGPNHPGTDGVIRLKVKMKGEFIEDLDQEIGFHHRGAEKIAERHTFHNYI 234
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR+DY+ + E Y L +E + GIE+P R + +R++ E+ RI SHL+ + +
Sbjct: 235 PYTDRIDYLGGVAGELPYLLGLEAMTGIEVPERAKTMRIMLCELFRISSHLVWFGSITHN 294
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+G + P + F EREK+ E G RMH A+FR GGV QD+P + + C
Sbjct: 295 LGGMAPAFYAFTEREKIFDVIELICGGRMHPAFFRIGGVSQDLPDGWQDKVEHACQGIEQ 354
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ D+ L+T + IFK R NI A WG +G +R +G +D+RK PY Y +
Sbjct: 355 LVPDLEKLMTHSMIFKIRTQNIAVYSQSMALDWGLTGPNLRATGINFDMRKDFPYMGYED 414
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DFD+P+G+ GD Y R ++R+ E+ ES+KIIRQ R+ ++ + P P++
Sbjct: 415 YDFDVPVGQDGDAYTRTVLRVQEVVESLKIIRQAAARMPEGPI---LADNAPSFGFPRKQ 471
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ R +E+LIH F G++ PV E + A E KG + IS+G PYR +IR P +
Sbjct: 472 NALRDIETLIHSFVDTGRGFNFPVAETFYATETAKGVTSYHTISNGTGCPYRVRIRTPSF 531
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H Q+++ + KG L+++ ++GS+D V ++DR
Sbjct: 532 THFQSVKAVSKGDLLSNIICLIGSIDYVLADIDR 565
>gi|312890393|ref|ZP_07749930.1| NADH dehydrogenase subunit D [Mucilaginibacter paludis DSM 18603]
gi|311297163|gb|EFQ74295.1| NADH dehydrogenase subunit D [Mucilaginibacter paludis DSM 18603]
Length = 403
Score = 345 bits (884), Expect = 1e-92, Method: Composition-based stats.
Identities = 139/394 (35%), Positives = 211/394 (53%), Gaps = 1/394 (0%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ +S T+N GP HPA HGV + +L+LDGE + IG +HR EK+ E + F Q
Sbjct: 10 NDPQSELSTLNLGPTHPATHGVFQNVLQLDGERIVSGVSTIGYIHRAFEKIAEHRPFYQI 69
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
P DRL+Y + + + VEK+LGIE+P R +RV+ E+ RI H++ +
Sbjct: 70 TPLTDRLNYCSSPINNMGWHMTVEKMLGIEMPKRVDYMRVIIMELARITDHIVCNGVLGV 129
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D GA T L+ + RE + YE GSR+ R GG ++ I + FP
Sbjct: 130 DTGAFTGFLYMMQYREAVYEIYEEICGSRLTTNIGRIGGFERNFNDIAFNKIKKFLKEFP 189
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
L + L NRIF R + V E+A + +SG ++R +G +D+R +PY Y
Sbjct: 190 PVLREFESLFNRNRIFVDRTKGVAAVTAEEALSYSWSGPILRAAGIDYDVRAQEPYSSYE 249
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ DF++P+G +GD Y R+LVR EM +S+++I Q + +L K A P+ P +
Sbjct: 250 DFDFEVPVGTNGDVYSRFLVRNEEMWQSLRMIEQAMAKL-EKEDSSIFHADVPEFYLPPK 308
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
++ +ME+LI+HFK+ P EVY AVE GE G YL++DGG PYR R P
Sbjct: 309 EEVYNNMEALIYHFKIVMGEIDTPKTEVYHAVEGANGELGFYLVNDGGRSPYRLHFRRPS 368
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ + Q + +G L+D + SL+++ GE+D
Sbjct: 369 FINYQMYAPMSRGMVLSDAIINMSSLNVIAGELD 402
>gi|227539636|ref|ZP_03969685.1| NADH dehydrogenase [Sphingobacterium spiritivorum ATCC 33300]
gi|227240549|gb|EEI90564.1| NADH dehydrogenase [Sphingobacterium spiritivorum ATCC 33300]
Length = 398
Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats.
Identities = 169/399 (42%), Positives = 235/399 (58%), Gaps = 30/399 (7%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
S+ IN GPQHP+ HGVLRL L DGEIV+ + PH+G LHR +K E+ + + +P+
Sbjct: 22 SQEMVINMGPQHPSTHGVLRLELITDGEIVKDIIPHLGYLHRCFDKHAESVNYTKTIPFT 81
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DRLDY+A MN HAY + VE++LG++ IP R + IRVL E+ RI SHL+ + T +D+
Sbjct: 82 DRLDYLASMNNSHAYVMGVERMLGLDSRIPKRVEYIRVLVCELNRIASHLIAIGTYGIDI 141
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP +W F +RE +M E ASGSRM Y GG+ D+P E + F
Sbjct: 142 GAFTPFMWCFRDREHIMNMLEWASGSRMLYNYIWIGGLFYDLPVGFEERCTEFVSYFKPK 201
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L ++ +LLT N+IF R NIG + + A +G SG M+R SG WDLR++ Y Y EL
Sbjct: 202 LVELDELLTQNQIFISRTANIGALPADVAINYGCSGPMLRASGIKWDLRRADGYSVYPEL 261
Query: 244 DFDIPIGKH-----GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
+F+IP+GK GDC+DRY VR+ E++ESV+I+ QC+ RL + + DP+ +
Sbjct: 262 EFNIPVGKGEMGKLGDCWDRYKVRVDEIKESVRIVEQCLERL--QKDFQRTTDFDPRALV 319
Query: 299 PKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLIS-DGGNKPYRCKI 357
PK+ ++K + Y E PKGE G Y ++ D + P R K
Sbjct: 320 PKKVNIK--------------------AQDYYVRAENPKGELGFYFVAQDKTDIPKRVKS 359
Query: 358 RAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
R P + +L + L KG +AD+ AILGS+DIV GEVDR
Sbjct: 360 RGPSFNNLSVLPELGKGVLIADLIAILGSIDIVLGEVDR 398
>gi|255535798|ref|YP_003096169.1| NADH-ubiquinone oxidoreductase chain D [Flavobacteriaceae bacterium
3519-10]
gi|255341994|gb|ACU08107.1| NADH-ubiquinone oxidoreductase chain D [Flavobacteriaceae bacterium
3519-10]
Length = 420
Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats.
Identities = 150/394 (38%), Positives = 223/394 (56%), Gaps = 4/394 (1%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
D+ + +T+N GP HPA HG+ + +L +DGE + + IG +HR EK+ E + F Q
Sbjct: 30 DQIDGQLYTLNLGPTHPATHGIFQNVLTMDGERILHSEQTIGYIHRAYEKISERRNFTQI 89
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
DR++Y + + L VEKL+G E+P R +RV+ E+ RI H++ AM
Sbjct: 90 TTLTDRMNYCSAPINNIGWHLTVEKLIGCEVPKRVDYMRVIMMELARIADHMVCNGVIAM 149
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D GA+T + F+EREK+ YE+ G+RM R GG +D + E + W FP
Sbjct: 150 DAGAITGLTYLFQEREKIYEMYEQVCGARMTTNMGRIGGFERDFNDKFHELLQTWLKRFP 209
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
++ L NRIF R +N+G + E A +GF+G +R +G +D+R + PY Y+
Sbjct: 210 KIWSEFCALNERNRIFMDRTINVGPISAERALSYGFTGPNLRAAGVDYDVRVASPYSSYN 269
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ DF IP+G GD YDR++VR E+ ES+KII Q L GP A P+ P++
Sbjct: 270 DFDFIIPVGSAGDTYDRFMVRQQEVWESLKIINQAYKNLPD----GPFHADVPEFYLPEK 325
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
AD+ +ME+LI+HFK+ VP+GEVY VE GE G YL+SDGG PYR R P
Sbjct: 326 ADVYNNMEALIYHFKIVMGETDVPIGEVYNCVEGGNGELGFYLVSDGGRTPYRLHFRRPC 385
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ + QA + KG ++D + S++++ GE+D
Sbjct: 386 FIYYQAYPEMIKGGMISDAVVTMCSMNVIAGELD 419
>gi|218514551|ref|ZP_03511391.1| NADH-ubiquinone oxidoreductase protein, chain D [Rhizobium etli
8C-3]
Length = 348
Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats.
Identities = 167/351 (47%), Positives = 218/351 (62%), Gaps = 5/351 (1%)
Query: 46 HRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSE 105
HRGTEKL E+ T+ Q P DRLDY+ P + A+ALAVEKLLGIE PIR Q IRV+ +E
Sbjct: 1 HRGTEKLAESFTYTQIFPLTDRLDYLCPPSNNLAFALAVEKLLGIEAPIRAQYIRVMMAE 60
Query: 106 IGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDI 165
+ RI HLL MD+GA+T L+ ERE +M E +G+RMH ++ R GGV +D+
Sbjct: 61 LARISGHLLITGALPMDLGAMTALLYVMREREMIMDLLEMITGARMHTSFCRVGGVREDL 120
Query: 166 PPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGS 225
P I +CD FP+ + D LL NR+F R IG + EDA G SG +R S
Sbjct: 121 PDGFFPKIREFCDIFPNRIRDYERLLEDNRVFLNRTKGIGVISAEDAVDLGLSGPNLRAS 180
Query: 226 GAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNK 285
G WD+R+ +PYE Y LDF++ GDCY R+ R+ EMRES+ II QC++++
Sbjct: 181 GVDWDIRRDEPYEIYDRLDFNVITRDEGDCYARWRCRVDEMRESMGIIEQCIDQM----P 236
Query: 286 VGPVSASDPKIVPPK-RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
GP P I P + + SME+LI HF L G+ VP GEVY+A+EAPKGE G Y+
Sbjct: 237 EGPFQIDMPTIAFPLDKDRVHCSMEALIQHFDLSAYGFKVPKGEVYSAIEAPKGELGFYI 296
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
ISDG KP+R K+RAP + +LQA+ + LAD+ A+LGSLD V EVD
Sbjct: 297 ISDGSPKPFRMKVRAPSFVNLQALFGVTNARYLADMIAVLGSLDPVMAEVD 347
>gi|260076088|gb|ACX30966.1| NADH dehydrogenase subunit 7 [Euplotes minuta]
Length = 444
Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats.
Identities = 184/407 (45%), Positives = 258/407 (63%), Gaps = 12/407 (2%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ +++++F +NFGPQHPA+HGVLR +L+L+GE + D +IG LHRGTEKL+E +T+L++
Sbjct: 38 NLQQTQTFIMNFGPQHPASHGVLRFVLQLEGEYIRHADANIGFLHRGTEKLMEQRTYLKS 97
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLG-IEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PYFDRLDYV+ M+QEHAY LA+E LLG +RV++ E+ R+++H L ++T +
Sbjct: 98 LPYFDRLDYVSMMSQEHAYCLAIEGLLGSSSFTSYFVQVRVMFDELTRLMNHFLGISTHS 157
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP-ELVEDIGCWCDS 179
+DVG ++P W FEERE+LM FYER SG+RMHAA++RP + + D+ + ++
Sbjct: 158 LDVGNMSPAFWAFEERERLMEFYERVSGARMHAAFYRPNDLDWTGLNYQFFIDLLFFLNN 217
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLR--KSQPY 237
++ ++ +L N I++ R V IG + + SGV+ R +G DLR K+ Y
Sbjct: 218 TYKSITEMFVILATNNIWRTRLVRIGVIDNTQVPLFAASGVVSRSAGLKKDLRILKTSTY 277
Query: 238 ECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPK-- 295
Y L +GK GDCYDR+++R+ EM ESV I+ Q V LL
Sbjct: 278 SYYWFLKLRSFLGKMGDCYDRFIIRIREMLESVFIVYQVVANLLNIFDSTTTLHFWTSTE 337
Query: 296 ------IVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGG 349
+ +R SME+LI+HFK Y+EG +P G VY +VEAPKGEFGV LISDG
Sbjct: 338 SYISSTLTKSQRNRKSTSMETLINHFKYYSEGTKLPAGLVYQSVEAPKGEFGVSLISDGS 397
Query: 350 NKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ P+RCKIR P Y HLQ M +GH AD+ ILGS DIVFGEVDR
Sbjct: 398 SGPFRCKIRTPAYHHLQFMSSQIRGHFFADMITILGSQDIVFGEVDR 444
>gi|24213592|ref|NP_711073.1| NADH dehydrogenase (ubiquinone) chain D [Leptospira interrogans
serovar Lai str. 56601]
gi|45658578|ref|YP_002664.1| NADH dehydrogenase subunit I D [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|81471027|sp|Q8F7Q2|NUOD_LEPIN RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|81567882|sp|Q72NT5|NUOD_LEPIC RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|24194384|gb|AAN48091.1| NADH dehydrogenase (ubiquinone) chain D [Leptospira interrogans
serovar Lai str. 56601]
gi|45601822|gb|AAS71301.1| NADH dehydrogenase I D subunit [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 405
Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats.
Identities = 145/385 (37%), Positives = 227/385 (58%), Gaps = 4/385 (1%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
+N GP HPA HG+L+ ++++DGE + + IG +HR EKL E T+ Q + DR++Y
Sbjct: 24 VNLGPSHPATHGILQNVIQIDGERIVEAESVIGYVHRCFEKLGERYTYNQFLVCTDRMNY 83
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
V+ + LAVEK++ IE+P R +R++ SE+ RI+ H++ +D+GA + L
Sbjct: 84 VSTPLNNIGWILAVEKMMQIEVPDRVTYVRMIISELSRIIDHIICTGILGVDLGAFSGML 143
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
F RE + E+ +G+R+ + R GG+ +DI P+ V+++ C A+ + + L
Sbjct: 144 HLFHHRENIYQIIEKLTGARLTTTFCRIGGLEKDIYPDFVKEVKLVCKGLKPAIEEFNSL 203
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
L N+IF R IG + E+A +G++G +R +G WD+RK +PY Y ++DFDIPIG
Sbjct: 204 LLKNKIFLGRTEGIGGISAENAIAYGYTGPNLRAAGVDWDVRKDEPYLFYDKVDFDIPIG 263
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
+ G R LVRM EMR+S++II Q V+ + GP A P P++ + +ME
Sbjct: 264 EDGSVLHRSLVRMEEMRQSIRIIEQLVDGI----PSGPWHADLPHAYLPEKHKVYNNMEE 319
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
LI+HFK+ G VP GE Y A EA GE G Y++S+G P+R +R P + + Q+
Sbjct: 320 LIYHFKIIMHGVKVPPGEYYMATEAANGELGFYIVSEGEKSPWRVHVRRPCFWYYQSFAE 379
Query: 371 LCKGHQLADVSAILGSLDIVFGEVD 395
L +G LAD A + SL+++ GE+D
Sbjct: 380 LVRGGLLADSVATMSSLNVIAGELD 404
>gi|118474354|ref|YP_891364.1| NADH-quinone oxidoreductase chain c/d [Campylobacter fetus subsp.
fetus 82-40]
gi|218528036|sp|A0RMD1|NUOCD_CAMFF RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|118413580|gb|ABK82000.1| NADH-quinone oxidoreductase chain c/d [Campylobacter fetus subsp.
fetus 82-40]
Length = 561
Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats.
Identities = 149/395 (37%), Positives = 219/395 (55%), Gaps = 4/395 (1%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
D+ K++ +N GP HPA HG +R + LDGE + IG LHRG EK E ++ Q
Sbjct: 171 DEFKTKYTFLNIGPSHPATHGTIRNFVALDGEKIISCVTEIGYLHRGFEKACENHSYAQI 230
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+PY DRL+Y + M YA AVE+ LG+ +P RG +RV+ E+ RI+ H + + +
Sbjct: 231 IPYTDRLNYCSAMLNNVGYAKAVEEALGLNLPDRGIFMRVILGELARIIDHEVCLGAMFV 290
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D+G LT + + RE++ F + +G+R ++ R GG+ D E++
Sbjct: 291 DMGGLTNYWYLYNPRERIYNFLSKLTGARFTNSFARIGGMANDFYDGWKEELLAHLKDVE 350
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
++D L+ NRIF R NI + DA +GFSG +R SG ++DLRK +PY Y
Sbjct: 351 KGVDDTMILIEKNRIFLDRVQNICKINANDALSYGFSGPNLRASGVSFDLRKDKPYYYYD 410
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF +P+G GD YDR VR EMRES+ IIRQ + + G +S D + P +
Sbjct: 411 SFDFSVPVGSEGDIYDRMFVRFFEMRESISIIRQAIKLI----PEGKISVDDKDVFLPSK 466
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ ++ESLI+HFKL +G +P G Y+A E GE G ++ S+ PYR K+R P
Sbjct: 467 DQVYSNIESLINHFKLIFDGIKLPNGHFYSASEGANGELGFFIFSNSEPNPYRVKLRPPC 526
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ L A + +G +AD LGSL+I+ GE+DR
Sbjct: 527 FYALNAFSSMVQGSLIADSILNLGSLNIIAGELDR 561
>gi|20090357|ref|NP_616432.1| F(420)H(2) dehydrogenase, subunit FpoD [Methanosarcina acetivorans
C2A]
gi|19915362|gb|AAM04912.1| F(420)H(2) dehydrogenase, subunit FpoD [Methanosarcina acetivorans
C2A]
Length = 374
Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats.
Identities = 140/397 (35%), Positives = 216/397 (54%), Gaps = 24/397 (6%)
Query: 1 MDK-KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFL 59
M++ + ++ GPQHP G RL L L GE V + +G +H+G EK++E KT+L
Sbjct: 1 MEEMLEPNEMIVHLGPQHPMQPGPFRLNLRLKGETVMDAEVELGFIHKGIEKILENKTYL 60
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
Q + DR+ Y+ + E + EKLLGIE P R Q IRV+ E+ R+ SHLL +
Sbjct: 61 QGITIVDRICYLVALTNEECFVGCTEKLLGIEPPERAQYIRVILEELSRLQSHLLGMGEF 120
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
+G ++ ++ +ERE ++ + +G+R+ +Y + GGV D+P E ++
Sbjct: 121 GEFIGFVSMFMYTIKEREDILTLIDMVTGARVTHSYLKFGGVRDDLPEGFKEKALPVLNN 180
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
++D ++ +RI+++R V +G + + A G SG +R +G +D+RK++PY
Sbjct: 181 LKKVISDYEEMFNSDRIYRERTVGVGVLTADVAKNLGVSGPPLRATGVPFDIRKNEPYLV 240
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y +LDF + GDC+ R VR+ EMRES+ I+ QC++++ P+ P
Sbjct: 241 YKDLDFKVCTETAGDCFARVQVRLNEMRESIYILEQCLDQIPNGP-------LFPEGTPY 293
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
R T VP GEV+ VE P+GE G+Y+ISDG +KPYR K+R
Sbjct: 294 GRR----------------TPVMRVPAGEVFHRVEDPRGEMGMYMISDGSDKPYRVKVRG 337
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
P Y LQA+ L KG +ADV+AI GS+D E DR
Sbjct: 338 PYYPTLQALPPLIKGTTVADVAAISGSMDGCTSEADR 374
>gi|149280567|ref|ZP_01886683.1| NADH dehydrogenase I chain D [Pedobacter sp. BAL39]
gi|149228682|gb|EDM34085.1| NADH dehydrogenase I chain D [Pedobacter sp. BAL39]
Length = 404
Score = 343 bits (879), Expect = 3e-92, Method: Composition-based stats.
Identities = 142/394 (36%), Positives = 213/394 (54%), Gaps = 1/394 (0%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ + T+N GP HPA HGV + +++LDGE + IG +HR EK+ E + F Q
Sbjct: 11 NDPQDELVTLNLGPTHPATHGVFQNVIQLDGERIVSGVSTIGYIHRAFEKIAEHRPFYQI 70
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
P DRL+Y + + + VEKLL I++P R +RV+ E+ RI H++ T A
Sbjct: 71 TPLTDRLNYCSSPINNMGWHMTVEKLLNIQLPKRVDYLRVIIMELSRIADHIICNTIIAQ 130
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D GA T L+ F+ RE + +E G+R+ R GG ++ I + FP
Sbjct: 131 DTGATTTFLYLFQFREHIYEIFEEVCGARLTTNIGRIGGFERNFNEIAFTKINKFLKEFP 190
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
AL + LL NRIF R + V E A +G++G ++R +G +D+R S PY Y
Sbjct: 191 VALREFESLLNRNRIFIDRTAGVAAVSAEQALDYGWTGPLLRSAGVDYDVRVSDPYASYQ 250
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ DF++P+G GD YDRYLVR EM +S+++I Q + +L + A P+ P +
Sbjct: 251 DFDFEVPVGTSGDIYDRYLVRNEEMWQSLRLIEQGLEKL-KQEPSDIFHADVPEFYLPAK 309
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
++ +ME+LI+HFK+ P EVY +VE GE G YLI+DGG PYR R P
Sbjct: 310 EEVYNNMEALIYHFKIVMGEIDAPKAEVYHSVEGGNGELGFYLINDGGRTPYRLHFRRPS 369
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ + Q + KG L+D + S++I+ GE+D
Sbjct: 370 FINYQMFAPMSKGMLLSDAIINMSSMNIIAGELD 403
>gi|312131897|ref|YP_003999237.1| NADH dehydrogenase subunit d [Leadbetterella byssophila DSM 17132]
gi|311908443|gb|ADQ18884.1| NADH dehydrogenase subunit D [Leadbetterella byssophila DSM 17132]
Length = 411
Score = 343 bits (879), Expect = 4e-92, Method: Composition-based stats.
Identities = 149/394 (37%), Positives = 224/394 (56%), Gaps = 5/394 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++++ T+N GP HPA HG+ + IL +DGE + + +G +HR EK+ E + F Q
Sbjct: 21 QEENNYTTLNLGPTHPATHGIFQNILTMDGERIVSSEMTVGYIHRAFEKIAERRPFYQIT 80
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
DR++Y + + + VEKLLGI +P R Q IRV+ E+ RI HL+ + +D
Sbjct: 81 TLTDRMNYCSSPINNMGWHMTVEKLLGITVPKRAQYIRVIMMELARIADHLICSSIMGVD 140
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWC-DSFP 181
GA + L+ +EREK+ YE G+R+ R GG+ +D+ P ++ I +S P
Sbjct: 141 TGAFSGFLYVMQEREKIYEIYEEMCGARLTTNMGRIGGMERDLSPTAIKKIKDLVYNSLP 200
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+ L NRIF+ R + +G V E A +GF+G +R +G +D+R +PY Y
Sbjct: 201 KVFAEFESLFDRNRIFRDRTIGVGPVSQEMAMSYGFTGPNLRATGIDYDVRVMEPYSSYE 260
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ +F+IP+G +GD YDRY VR E+ ES+KIIRQ + L G A++ P +
Sbjct: 261 DFEFEIPVGHNGDTYDRYKVRNAEVWESIKIIRQAIENL----PEGDYHANENHYYLPPK 316
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ ++ME+LI+HFK+ PVGEVY AVE GE G YL+SDGG PYR R P
Sbjct: 317 QAVYQNMEALIYHFKIVMGEIDAPVGEVYHAVEGGNGELGFYLVSDGGRTPYRLHFRRPC 376
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ + QA L KG ++D I+ SL+++ GE+D
Sbjct: 377 FIYYQAFGELIKGGTVSDAIPIMSSLNVIAGELD 410
>gi|303248161|ref|ZP_07334425.1| NADH-ubiquinone oxidoreductase chain 49kDa [Desulfovibrio
fructosovorans JJ]
gi|302490425|gb|EFL50334.1| NADH-ubiquinone oxidoreductase chain 49kDa [Desulfovibrio
fructosovorans JJ]
Length = 408
Score = 343 bits (879), Expect = 4e-92, Method: Composition-based stats.
Identities = 111/407 (27%), Positives = 188/407 (46%), Gaps = 19/407 (4%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
+ FGPQHP L L L ++ E V P +G +HRG EKL E + F Q + +R
Sbjct: 3 RTILPFGPQHPVLPEPLHLKLTVEDETVIEALPTLGYVHRGLEKLCEIRDFNQMIQIVER 62
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ + Y +E+++G+E+P R + +R ++ E+ R+ SHLL + A G +
Sbjct: 63 VCGICSCLHALCYCEGLEQIMGVEVPPRAKYLRTIWGELHRMHSHLLWLGLFADAFGFES 122
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
+ + RE++M E G+R+ + GG +D+ PE + I L +
Sbjct: 123 LFMQFWRIRERIMDIMEATCGNRVVVSVNVIGGTRRDLSPEQCQWIEQQLAISEKELKQL 182
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
S + + K+R V G + E A+ G +G +RGSG A D R++ Y + EL FD
Sbjct: 183 SSTILNDYTVKKRTVGKGVLTKEQAYQLGAAGPTLRGSGWAQDARQTG-YAAFGELGFDP 241
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGK----NKVGPVSASDPKIVPPKRAD 303
+ GD Y R VR E +S+ ++R + R+ N G + P+ + +R D
Sbjct: 242 IVEYDGDSYARSAVRFRETLQSIDLVRLAIARMPAGETATNIEGALGDDTPRPITGERGD 301
Query: 304 MKRSMESLIHHFKLYTEGYHV--------------PVGEVYAAVEAPKGEFGVYLISDGG 349
+ ++ + + ++ P GE VE P+GE YL ++G
Sbjct: 302 IMQAYKHDKRRRTVAAPPPNLDLPSGHVSVKVKGKPDGEAVTRVEQPRGELLYYLKANGS 361
Query: 350 NKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
R +IR P +A++ + + G +LADV ++ S+D +R
Sbjct: 362 KYMDRVRIRTPTFANIPPLLAMLPGCELADVPVLVLSIDPCISCTER 408
>gi|73670847|ref|YP_306862.1| F420H2 dehydrogenase subunit D [Methanosarcina barkeri str. Fusaro]
gi|72398009|gb|AAZ72282.1| F420H2 dehydrogenase subunit D [Methanosarcina barkeri str. Fusaro]
Length = 374
Score = 343 bits (879), Expect = 4e-92, Method: Composition-based stats.
Identities = 140/397 (35%), Positives = 214/397 (53%), Gaps = 24/397 (6%)
Query: 1 MDKK-KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFL 59
M++K + ++ GPQHP G RL L L GE V D +G +H+G EK++E KT+L
Sbjct: 1 MEEKLEPNEMIVHLGPQHPMQPGPFRLNLRLKGETVVDADIELGFIHKGIEKILENKTYL 60
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
Q + DR+ Y+ + E + EKLLGIE P R Q IRV+ E+ RI SHLL +
Sbjct: 61 QGITIVDRICYLVALVNEECFVGCTEKLLGIEPPERSQYIRVILDELTRIQSHLLGMGEF 120
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
+G ++ ++ ERE+++ + +G+R+ +Y + GGV D+P E ++
Sbjct: 121 GEFIGFVSMFMYTIREREEVLSLIDMITGARITHSYLKFGGVRDDLPDGFKEKALSVLNN 180
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+++D ++ +RI+++R V +G + + A G SG +R +G +D+RK++PY
Sbjct: 181 LKKSVDDFEEMFHTDRIYRERTVGVGVLTADVAKNLGVSGPPLRATGVPFDIRKNEPYLV 240
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y +LDF + GDC+ R VR+ E+RES+ I+ QC +++ S +
Sbjct: 241 YKDLDFKVCTETAGDCFARVQVRINEIRESIYILEQCFDQIPSGPLFPEGSLYGRR---- 296
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
T VP GEV+ VE P+GE G+Y+ISDG +KPYR KIR
Sbjct: 297 -------------------TPVMRVPAGEVFYRVEDPRGEMGMYMISDGSDKPYRVKIRG 337
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
P Y LQA+ L G +ADV+AI GS+D E DR
Sbjct: 338 PYYPTLQALPPLIIGTTVADVAAISGSMDGCTSEADR 374
>gi|320352993|ref|YP_004194332.1| NADH dehydrogenase subunit D [Desulfobulbus propionicus DSM 2032]
gi|320121495|gb|ADW17041.1| NADH dehydrogenase subunit D [Desulfobulbus propionicus DSM 2032]
Length = 372
Score = 342 bits (878), Expect = 5e-92, Method: Composition-based stats.
Identities = 146/394 (37%), Positives = 214/394 (54%), Gaps = 30/394 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +F +N GPQHPA HGVLR+ L +DGE + + +P +G +HR EKL E TF Q +P
Sbjct: 8 RHDETFVLNLGPQHPATHGVLRVKLTMDGEYIVKAEPVLGYIHRMHEKLAEGGTFAQFMP 67
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
R+DY+ + H +AL VEK GIE+P R + IRV+ E+ RI SHLL +D+
Sbjct: 68 NTARMDYLHALAFNHGWALVVEKAAGIEVPERAEYIRVITVELNRIASHLLWWAAFLLDL 127
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G TP L+ F++REK++ ER +GSR+ Y R GGV+ DI E + +
Sbjct: 128 GGFTPLLYAFDDREKIIDLLERITGSRLTYCYMRFGGVYNDIDDEFIAGTRAFIKRLRGR 187
Query: 184 LND-ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ DL+T N I +R +IG V + +G +G + RGSG +D+RK++PY Y E
Sbjct: 188 MPRLYHDLVTHNIILIKRIKDIGFVSADQCRRYGATGPVARGSGIHYDIRKNEPYSVYPE 247
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DFDIP+ GD RY+VRM EM +S++II Q +++L G +G
Sbjct: 248 FDFDIPVFNEGDSMARYMVRMHEMEQSMRIIEQALDKLPGGPVMG--------------- 292
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
++ G Y+AVE +G G L+ +G PY+ K+R+P +
Sbjct: 293 --------------KVSKMLKPEAGYYYSAVETARGSLGHRLVCNGDKNPYKLKLRSPTF 338
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L + +G LAD A +GSLD+V E+DR
Sbjct: 339 CNLSLFGEVAEGMLLADALAFMGSLDLVIPEIDR 372
>gi|312136851|ref|YP_004004188.1| NADH-ubiquinone oxidoreductase chain 49kda [Methanothermus fervidus
DSM 2088]
gi|311224570|gb|ADP77426.1| NADH-ubiquinone oxidoreductase chain 49kDa [Methanothermus fervidus
DSM 2088]
Length = 536
Score = 342 bits (877), Expect = 6e-92, Method: Composition-based stats.
Identities = 118/388 (30%), Positives = 181/388 (46%), Gaps = 29/388 (7%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
T+ FGP HPA + L GE V V P IG HRG EKL ET+ F + +R+
Sbjct: 151 VTVPFGPYHPALKEPEHFAIVLKGEKVVDVFPRIGYAHRGVEKLCETRPFHDVLYLVERV 210
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+ AY LAVE+L GI+ P R + +R + +E+ RI SH++ + G T
Sbjct: 211 CGICSFAHSWAYTLAVEELTGIKAPRRAEYLRTIVAELERIHSHVMWIGLLGYWAGFETM 270
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
+W + REK+M E +G+R++A++ GG D+ E + ++ +F ++
Sbjct: 271 FMWIWGIREKIMHLLELITGNRVNASFITIGGTVTDVSEEKLNEVKKVVKTFEDFAEELM 330
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
D L +R IG + A +G +G +IR +G D+RK +PY Y EL +D+
Sbjct: 331 DALFSYDPLVERMKKIGVYDSKKAIKYGATGPVIRATGVPNDIRKIEPYGAYEELPWDVV 390
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
GD ++ +RM E+ ES +II + + + N S
Sbjct: 391 TKDGGDVFNVTTLRMYEVLESSRIIIEAIENIPSGNPTPKRFFSR--------------- 435
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
+ GE VEAP+GE Y+++ PYR +IR P +A+L
Sbjct: 436 --------------RIKDGEAIGRVEAPRGELFDYVMAKNSKNPYRVRIRTPTFANLIFT 481
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVDR 396
L KG L+DV IL ++D F +DR
Sbjct: 482 SNLLKGSTLSDVPLILTTMDPCFACLDR 509
>gi|325280125|ref|YP_004252667.1| NAD(P)H-quinone oxidoreductase subunit H [Odoribacter splanchnicus
DSM 20712]
gi|324311934|gb|ADY32487.1| NAD(P)H-quinone oxidoreductase subunit H [Odoribacter splanchnicus
DSM 20712]
Length = 540
Score = 342 bits (877), Expect = 7e-92, Method: Composition-based stats.
Identities = 149/392 (38%), Positives = 215/392 (54%), Gaps = 29/392 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ + +N GPQHPA HGVLR + L+GEIV++VD + G +HRG EK+ ET T+ Q +
Sbjct: 178 EDDEYVVNIGPQHPATHGVLRFRVSLEGEIVKKVDVNCGYIHRGIEKMCETLTYPQTLAL 237
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDY++ HA + +E+ +G+EIP R + IR + E+ RI SHLL +T MD+G
Sbjct: 238 TDRLDYLSAHMNRHALCMCIEEAMGLEIPERAKYIRTIMDELTRIASHLLFWSTFCMDLG 297
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
ALT +GF +REK++ +E G R+ Y GGV DI P L+ I + P L
Sbjct: 298 ALTAFFYGFRDREKILDMFEETCGGRLIQNYNCIGGVMADIHPNLITRIKDFIRYLPPML 357
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ + TGN I +QR +IG + LEDA +G +G R SG D+RK PY Y ++D
Sbjct: 358 KEYHGVFTGNIIARQRMKDIGILSLEDAISYGVTGPSGRASGWKCDIRKIHPYGVYDKVD 417
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F HGD ++RY+VRM E+ ES+ I+ Q V+ + +
Sbjct: 418 FKEITYNHGDTFNRYMVRMDEIVESLHILEQLVDNIPEGDFAVKTK-------------- 463
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
+P G+ Y +VEA +GEFGVY+ S G PYR K R+PG
Sbjct: 464 ---------------PIIKLPEGQYYKSVEAARGEFGVYIESHGDKFPYRVKFRSPGLPL 508
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ ++ L +++AD+ AI GSLD V ++DR
Sbjct: 509 VSVVDLLASNNKIADLIAIGGSLDYVVPDIDR 540
>gi|307265662|ref|ZP_07547215.1| NADH-ubiquinone oxidoreductase chain 49kDa [Thermoanaerobacter
wiegelii Rt8.B1]
gi|306919306|gb|EFN49527.1| NADH-ubiquinone oxidoreductase chain 49kDa [Thermoanaerobacter
wiegelii Rt8.B1]
Length = 363
Score = 341 bits (876), Expect = 8e-92, Method: Composition-based stats.
Identities = 122/391 (31%), Positives = 186/391 (47%), Gaps = 32/391 (8%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
S TI FGPQHP + L L ++ E V P G +HRG E L++ K F Q V
Sbjct: 5 SDKSTIPFGPQHPVLPEPIHLKLVVEDEKVVEAYPSFGFVHRGLEMLVQKKDFNQMVYVV 64
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
D + + AY AVE+L+GI++P R + +RV+++E+ RI SHLL A G
Sbjct: 65 DHICGICSAMHGQAYCQAVEELIGIDVPERAKYLRVVWAELHRIHSHLLWFGLLADAFGF 124
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ + REK+M E +G+R+ + GGV +DI E + + L
Sbjct: 125 ENLFMLSWRIREKIMDILEATAGNRVIISVNIVGGVRRDIDTEQAKWLLNELKEVEEGLK 184
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
++ ++ N KQR V IG + EDA+ +G G +RGSG D+R + Y Y LDF
Sbjct: 185 ELEKIVKNNYTIKQRTVGIGVLSKEDAYMFGAVGPTLRGSGVPIDMRTTG-YAAYGNLDF 243
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ + GD Y R +VR+ EM +S+ ++RQ +N++ V
Sbjct: 244 EPVVETDGDTYARTIVRVREMFQSIDLVRQALNKMPEGEINVKVK--------------- 288
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
++P GEV VE P+GE Y+ S GG R +IR P +A+L
Sbjct: 289 ----------------PNLPAGEVITRVEQPRGEVFYYIKSSGGKNLDRLRIRTPTFANL 332
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ + G LADV ++ ++D +R
Sbjct: 333 ASLLHMLPGSTLADVPVLVLTIDPCISCTER 363
>gi|58697356|ref|ZP_00372694.1| NADH dehydrogenase I, D subunit [Wolbachia endosymbiont of
Drosophila simulans]
gi|58536257|gb|EAL59788.1| NADH dehydrogenase I, D subunit [Wolbachia endosymbiont of
Drosophila simulans]
Length = 313
Score = 341 bits (876), Expect = 8e-92, Method: Composition-based stats.
Identities = 201/317 (63%), Positives = 259/317 (81%), Gaps = 4/317 (1%)
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKL 139
Y+L VEKLL E+PIR + +RVL+ E+ RIL+HLLNV++QA+DVGA+TP LW FEEREK+
Sbjct: 1 YSLCVEKLLQCEVPIRAKYLRVLFCELTRILNHLLNVSSQALDVGAMTPLLWLFEEREKI 60
Query: 140 MVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQ 199
+ FYERASG+R HAAY RPGG+ D+P +L+EDI + + FP ++D+ +LLT NRI+KQ
Sbjct: 61 LEFYERASGARFHAAYIRPGGIAADVPEDLIEDIAKFIEQFPKYIDDVDELLTENRIWKQ 120
Query: 200 RNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRY 259
R V I + ++ A WGFSG M+R +G AWDLRKSQPYE Y +LDFDIPIG++GDCYDRY
Sbjct: 121 RTVGISEISIKQALDWGFSGPMLRAAGLAWDLRKSQPYEIYDQLDFDIPIGQNGDCYDRY 180
Query: 260 LVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYT 319
LVRM E+R+S+ +++QC+ ++ G + D KI PP RA+MK+SME+LIHHFKLY+
Sbjct: 181 LVRMAEIRQSISLVKQCIEKM----PEGQIKTEDRKISPPSRAEMKKSMEALIHHFKLYS 236
Query: 320 EGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLAD 379
EGYHVP GE YA VEAPKGEFGVY++SDG N+PYRC+IRAPG+AHLQA++F+ KGH LAD
Sbjct: 237 EGYHVPEGEAYAVVEAPKGEFGVYIVSDGTNRPYRCRIRAPGFAHLQALDFMAKGHMLAD 296
Query: 380 VSAILGSLDIVFGEVDR 396
V+AI+GSLDIVFGE+DR
Sbjct: 297 VAAIIGSLDIVFGEIDR 313
>gi|116330241|ref|YP_799959.1| NADH dehydrogenase (ubiquinone), D chain [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
gi|122281996|sp|Q04V69|NUOD_LEPBJ RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|116123930|gb|ABJ75201.1| NADH dehydrogenase (ubiquinone), D chain [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
Length = 404
Score = 341 bits (876), Expect = 9e-92, Method: Composition-based stats.
Identities = 144/385 (37%), Positives = 226/385 (58%), Gaps = 4/385 (1%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
+N GP HPA HG+L+ ++++DGE + + IG +HR EKL E T+ Q + DR++Y
Sbjct: 23 VNLGPSHPATHGILQNVIQIDGERIVEAESVIGYVHRCFEKLGERYTYNQFLVCTDRMNY 82
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
V+ + LAVEK++ +E+P R +R++ SE+ RI+ H++ + +D+GA + L
Sbjct: 83 VSTPLNNIGWILAVEKMMQVEVPDRVTYVRMIISELSRIMDHIICLGILGVDLGAFSGML 142
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
F RE + E+ +G+R+ + R GG+ +DI PE +++ C A+ + + L
Sbjct: 143 HLFHHRENIYQIIEKLTGARLTTTFCRIGGLERDIYPEFEKEVKLVCKGLKPAIEEFNSL 202
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
L N+IF R IG + E+A +GFSG +R +G WD+RK +PY Y ++DFD+PIG
Sbjct: 203 LLKNKIFLGRTEGIGGISAENAIAYGFSGPNLRAAGVDWDVRKDKPYMLYDKVDFDVPIG 262
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
+ G R LVRM EMR+S++II Q V+ + G A P P++ + +ME
Sbjct: 263 EDGSVLHRSLVRMEEMRQSIRIIEQLVDGI----PSGAWHADLPHAYLPEKNKVYNNMEE 318
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
LI+HFK+ G VP GE Y A EA GE G Y++S+G P+R +R P + + Q+
Sbjct: 319 LIYHFKIIMHGVKVPPGEHYMATEAANGELGFYIVSEGEKSPWRVHVRRPCFWYYQSFAE 378
Query: 371 LCKGHQLADVSAILGSLDIVFGEVD 395
L +G LAD A + SL+++ GE+D
Sbjct: 379 LVRGGLLADSVATMSSLNVIAGELD 403
>gi|29831221|ref|NP_825855.1| NADH dehydrogenase I chain D [Streptomyces avermitilis MA-4680]
gi|81718259|sp|Q82ED7|NUOD2_STRAW RecName: Full=NADH-quinone oxidoreductase subunit D 2; AltName:
Full=NADH dehydrogenase I subunit D 2; AltName:
Full=NDH-1 subunit D 2
gi|29608336|dbj|BAC72390.1| putative NADH dehydrogenase I chain D (complex I) [Streptomyces
avermitilis MA-4680]
Length = 383
Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats.
Identities = 135/394 (34%), Positives = 208/394 (52%), Gaps = 28/394 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+S +N GPQHP+ HGVLRL L LDGE ++ +P IG +HRG EKL E + + Q +
Sbjct: 15 AESTDMVLNIGPQHPSTHGVLRLRLVLDGERIQHAEPVIGYMHRGAEKLFEARDYRQIIM 74
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+R D+++ + E LAVE++LG+E+P R R L +E+ R+L+HL+ + + +++
Sbjct: 75 LANRHDWLSAFSNELGVVLAVERMLGMEVPERAVWTRTLLAELNRVLNHLMFLGSYPLEL 134
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP + F ERE+L E SG RMH + R GG+ +D+P + S
Sbjct: 135 GGITPIFYAFTEREELQHVMEEISGGRMHYMFNRVGGLKEDLPAGWATRARACVAALRSR 194
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE- 242
L+ DL+ GN IF+ R +G + E +G SG + RGSG +DLR+ +PY Y E
Sbjct: 195 LDVYDDLVLGNEIFRGRTRGVGVLTPEAVHAYGVSGPIARGSGVDFDLRRDEPYLAYGEL 254
Query: 243 -LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ + GDC R+ + + ++ + C++RL + GP++ PK++
Sbjct: 255 QDTLKVVTRQEGDCLARFECLLEQTHNALDLADACLDRL-AELPPGPINQRLPKVL---- 309
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
P G YA E P G G YL+S G PYR K+R+
Sbjct: 310 ---------------------KAPEGHTYAWTENPLGINGYYLVSKGEKTPYRLKLRSAS 348
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ ++QA+ L G +AD+ AILGSL V G++D
Sbjct: 349 FNNIQALTELLPGTLVADMVAILGSLFFVVGDID 382
>gi|297493928|gb|ADI40686.1| NADH dehydrogenase Fe-S protein 2 [Cynopterus sphinx]
Length = 323
Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats.
Identities = 202/320 (63%), Positives = 254/320 (79%), Gaps = 4/320 (1%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
+ T+NFGPQHPAAHGVLRL++EL GE+V + DPHIGLLHRGTEKLIE KT+LQA+PYFDR
Sbjct: 6 NLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDR 65
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
LDYV+ M E AY+LAVEKLL I+ P R Q IRVL+ EI R+L+H++ VTT A+D+GA+T
Sbjct: 66 LDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRLLNHIMAVTTHALDIGAMT 125
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
P W FEEREK+ FYER SG+RMHAAY RPGGVHQD+P L++DI + +F ++++
Sbjct: 126 PFFWMFEEREKMFEFYERVSGARMHAAYVRPGGVHQDLPLGLMDDIYEFSKNFSLRIDEL 185
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
++LT NRI++ R V+IG V EDA +GFSGVM+RGSG WDLRK+QPY+ Y ++DFD+
Sbjct: 186 EEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDMYDQVDFDV 245
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
PIG HGDCYDRYL R+ EMR+S++II QC+N++ G + D K+ PPKRA+MK S
Sbjct: 246 PIGSHGDCYDRYLCRVEEMRQSLRIISQCLNKM----PPGEIKVDDAKVSPPKRAEMKTS 301
Query: 308 MESLIHHFKLYTEGYHVPVG 327
MESLIHHFKLYTEGY VP G
Sbjct: 302 MESLIHHFKLYTEGYQVPPG 321
>gi|307327039|ref|ZP_07606229.1| NADH dehydrogenase (quinone) [Streptomyces violaceusniger Tu 4113]
gi|306887337|gb|EFN18333.1| NADH dehydrogenase (quinone) [Streptomyces violaceusniger Tu 4113]
Length = 380
Score = 341 bits (874), Expect = 1e-91, Method: Composition-based stats.
Identities = 137/394 (34%), Positives = 208/394 (52%), Gaps = 28/394 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+S +N GPQHP+ HGVLRL L LDGE ++ +P IG +HRG EKL E + + Q +
Sbjct: 12 AESTDMVLNIGPQHPSTHGVLRLRLVLDGERIQSAEPVIGYMHRGAEKLFEARDYRQIIM 71
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+R D+++ + E LAVE++LG+E+P R R L +E+ RIL+HL+ + + +++
Sbjct: 72 LANRHDWLSAFSNELGVVLAVERMLGMEVPERAVWTRTLLAELNRILNHLMFLGSYPLEL 131
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP + F ERE L E SG RMH + R GG+ +D+P + S
Sbjct: 132 GGITPIFYAFREREDLQHVMEEISGGRMHYMFNRVGGLKEDLPAGWLGRARQAVAEVRSR 191
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+N DL+ GN IF+ R ++G + E +G SG + R SG +DLR+ +PY Y EL
Sbjct: 192 MNVYDDLVLGNEIFRGRTRDVGVLAREAVHAYGVSGPIARASGVDFDLRRDEPYLAYPEL 251
Query: 244 DF--DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ + GDC R+ + + S+ + C++RL + GP++ PK++
Sbjct: 252 QDVLKVVTRQEGDCLARFECLLEQAHNSLALADACLDRL-DELPAGPINQRLPKVL---- 306
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
P G YA E P G G YL+S G PYR K+R+
Sbjct: 307 ---------------------KAPEGHTYAWTENPLGLNGYYLVSKGEKTPYRLKLRSAS 345
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ ++QA+ L G +AD+ AILGSL V G++D
Sbjct: 346 FNNIQAITELLPGTLVADMVAILGSLFFVVGDID 379
>gi|313679550|ref|YP_004057289.1| NADH dehydrogenase (quinone) [Oceanithermus profundus DSM 14977]
gi|313152265|gb|ADR36116.1| NADH dehydrogenase (quinone) [Oceanithermus profundus DSM 14977]
Length = 375
Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats.
Identities = 150/392 (38%), Positives = 224/392 (57%), Gaps = 28/392 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+S +N GPQHPA HGVLR++L L+GE + R PHIG LHR EK+ E +T+ + Y
Sbjct: 12 RSDEMIVNMGPQHPATHGVLRVVLGLEGERITRAVPHIGYLHRNHEKIEEARTYPMVIAY 71
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DYV+ E + LAVE +LGIE+P R + IR ++ E+ R+ SHL+ + T +D+G
Sbjct: 72 TDRMDYVSGTQNELPFVLAVEDMLGIEVPDRAKKIRTMFFELYRLASHLVWMGTAMLDLG 131
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++P L+ F +RE ++ E+ +G+RM Y+ GGV +D+ P+ +D+ + D +
Sbjct: 132 AISPFLYTFWDREIILGIVEKTAGARMLPNYYTFGGVRRDVHPDFFKDVADFLDHMERRM 191
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
D L+ + + R + +G + E A G SG ++R SG A+D+RK+ PY+ Y +++
Sbjct: 192 VDYEHLVLESPVVHARTIGVGVLSKERAIARGVSGPVLRASGVAYDVRKAFPYDAYPDVE 251
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F+IP GD Y R+ VR EM +S++I+RQ V K GP P +
Sbjct: 252 FEIPTSPDGDTYARFWVRFQEMYQSIRILRQLVE---LTPKTGPYKGKAPARI------- 301
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE Y AVE +GE GV ++SDG +KPYR K R +++
Sbjct: 302 ------------------KPPAGERYRAVENSRGELGVLVVSDGTDKPYRVKHRGAAFSN 343
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
LQ + L G + +D AIL SLD VFGE+DR
Sbjct: 344 LQIVPDLFVGAKFSDAIAILASLDPVFGEIDR 375
>gi|260076127|gb|ACX31004.1| NADH dehydrogenase subunit 7 [Moneuplotes crassus]
Length = 462
Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats.
Identities = 186/405 (45%), Positives = 255/405 (62%), Gaps = 12/405 (2%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+++++F +NFGPQHPA+HGVLR +L+L+GE + D +IG LHRGTEKLIE +T+L+++P
Sbjct: 57 EQTQTFMMNFGPQHPASHGVLRFVLQLEGEYIRHADANIGFLHRGTEKLIEQRTYLKSLP 116
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLG-IEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
YFDRLDYV+ M+QEHAY LA+E LLG +R L+ E+ R+++H L ++T ++D
Sbjct: 117 YFDRLDYVSMMSQEHAYCLAIENLLGSSTFTSFFVQVRALFDELTRLMNHFLGISTHSLD 176
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP-ELVEDIGCWCDSFP 181
VG ++P W FEERE+LM FYER SG+RMHAA++RP + + D+ + ++
Sbjct: 177 VGNMSPAFWAFEERERLMEFYERVSGARMHAAFYRPNDLDWTGLNYQFFIDLLFFLNNTY 236
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLR--KSQPYEC 239
++ ++ +L N I++ R V IG V + SGV+ R +G DLR K+ Y
Sbjct: 237 KSITEMFVILATNNIWRSRLVRIGVVDNAQVPLFAASGVVSRSAGFKKDLRILKTSTYSY 296
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASD------ 293
Y L +GK GDCYDR+++R+ EM ESV II Q ++ LL +
Sbjct: 297 YWFLKLRSFLGKMGDCYDRFIIRIREMLESVFIIYQIISNLLVVFESTTALPFWYNTESY 356
Query: 294 --PKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNK 351
+ SME+LI HFK Y+EG VP G VY +VEAPKGEFGV LISDG +K
Sbjct: 357 VSATFTKSQFNKKSTSMEALITHFKHYSEGIKVPAGLVYQSVEAPKGEFGVSLISDGSSK 416
Query: 352 PYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
P+RCKIR P Y HLQ M +GH AD+ ILGS DIVFGEV R
Sbjct: 417 PFRCKIRTPAYHHLQFMSSQIRGHFFADMITILGSQDIVFGEVIR 461
>gi|116329151|ref|YP_798871.1| NADH dehydrogenase (ubiquinone), D chain [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
gi|122283067|sp|Q04YA7|NUOD_LEPBL RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|116121895|gb|ABJ79938.1| NADH dehydrogenase (ubiquinone), D chain [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
Length = 405
Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats.
Identities = 145/385 (37%), Positives = 226/385 (58%), Gaps = 4/385 (1%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
+N GP HPA HG+L+ ++++DGE + + IG +HR EKL E T+ Q + DR++Y
Sbjct: 24 VNLGPSHPATHGILQNVIQIDGERIVEAESVIGYVHRCFEKLGERYTYNQFLVCTDRMNY 83
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
V+ + LAVEK++ +E+P R +R++ SE+ RI+ H++ + +D+GA + L
Sbjct: 84 VSTPLNNIGWILAVEKMMQVEVPDRVTYVRMIISELSRIMDHIICLGILGVDLGAFSGML 143
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
F RE + E+ +G+R+ + R GG+ +DI PE +++ C A+ + + L
Sbjct: 144 HLFHHRENIYQIIEKLTGARLTTTFCRIGGLERDIYPEFEKEVKLVCKGLKPAIEEFNSL 203
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
L N+IF R IG + E+A +GFSG +R +G WD+RK +PY Y ++DFD+PIG
Sbjct: 204 LLKNKIFLGRTEGIGGISAENAIAYGFSGPNLRAAGVDWDVRKDKPYMLYDKVDFDVPIG 263
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
+ G R LVRM EMR+S++II Q V+ + G A P P++ + +ME
Sbjct: 264 EDGSVLHRSLVRMEEMRQSIRIIEQLVDGI----PSGAWHADLPHAYLPEKNKVYNNMEE 319
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
LI+HFK+ G VP GE Y A EA GE G Y+IS+G P+R +R P + + Q+
Sbjct: 320 LIYHFKIIMHGVKVPPGEHYMATEAANGELGFYIISEGEKSPWRVHVRRPCFWYYQSFAE 379
Query: 371 LCKGHQLADVSAILGSLDIVFGEVD 395
L +G LAD A + SL+++ GE+D
Sbjct: 380 LVRGGLLADSVATMSSLNVIAGELD 404
>gi|21228590|ref|NP_634512.1| F420H2 dehydrogenase subunit [Methanosarcina mazei Go1]
gi|7649016|gb|AAF65734.1|AF228525_4 F420H2 dehydrogenase subunit FpoD [Methanosarcina mazei Go1]
gi|20907084|gb|AAM32184.1| F420H2 dehydrogenase subunit [Methanosarcina mazei Go1]
Length = 374
Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats.
Identities = 134/397 (33%), Positives = 213/397 (53%), Gaps = 24/397 (6%)
Query: 1 MDK-KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFL 59
M++ +S ++ GPQHP G RL L+L GE + + +G +H+G EK++E +T+L
Sbjct: 1 MEEMLESNEMIVHLGPQHPMQPGPFRLNLKLKGETIMDAEVEMGYIHKGIEKILENRTYL 60
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
Q + DR+ Y+ + E Y VEKLL IE P R Q IRV+ E+ R+ SHLL +
Sbjct: 61 QGITIVDRICYLVALTNEECYVGCVEKLLDIEPPERAQYIRVILEELSRLQSHLLGLGEY 120
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
+G ++ ++ +ERE ++ + +G+R+ +Y R GGV D+P E +
Sbjct: 121 GEFIGFVSMFMYTIKEREDILTLIDMVTGARVTHSYLRFGGVRDDLPEGFKEKTIPVLNK 180
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ D ++ + I+++R + IG + ++A G SG ++R +G +D+RK++PY
Sbjct: 181 LKKVIRDYEEMFYSDTIYRERTIGIGVLTADEAKSLGVSGPVLRATGVPFDIRKNEPYLV 240
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y +LDF + GDC+ R VR+ EMRES+ II QC++ + + +
Sbjct: 241 YRDLDFKVCTETAGDCFARVQVRLNEMRESIYIIEQCLDMIPNGPIFPEGTPYGKR---- 296
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
T VP GEV+ VE P+GE G+Y++SDG ++PYR K+R
Sbjct: 297 -------------------TPVMRVPAGEVFHRVEDPRGEMGMYMVSDGSDRPYRVKVRG 337
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
P Y LQA+ L G +AD+ +I GS+D EVDR
Sbjct: 338 PYYPTLQALPPLIIGTTVADMVSISGSMDGCTSEVDR 374
>gi|119719101|ref|YP_919596.1| NADH dehydrogenase (ubiquinone), 30 kDa subunit [Thermofilum
pendens Hrk 5]
gi|119524221|gb|ABL77593.1| NADH dehydrogenase (ubiquinone), 30 kDa subunit [Thermofilum
pendens Hrk 5]
Length = 567
Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats.
Identities = 113/389 (29%), Positives = 168/389 (43%), Gaps = 32/389 (8%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETK-TFLQAVPYFDR 67
+ GP H A + + LDGE V VD + +HRG EKL E++ T+ Q +R
Sbjct: 179 MQVPIGPVHAVADEPGQFRVFLDGEKVVDVDYRMFYVHRGIEKLAESRLTYNQVPFIAER 238
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ + AY AVE+ LGIE+P R IR L E+ R+ SHLLN+ G
Sbjct: 239 ICGICGYAHSCAYCQAVEQALGIEVPERALYIRTLMLEVERLHSHLLNLGLACHLAGFDW 298
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
+ F+ REK+M E +G R GGV +DI + + +
Sbjct: 299 GFMAFFKAREKVMYMAELLTGGRKTYGMNVVGGVRRDITEDRAKKALEILKEVEKEYKAV 358
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
D + R ++G + + A G + RGS D RK PY YSE+DF +
Sbjct: 359 LDAVLSTSTLVSRAKDVGVLPRDVARKVSVVGPVARGSSIKRDTRKDHPYAAYSEVDFKV 418
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
P+ GD R VR E E++ IIRQ + + G V P
Sbjct: 419 PVHSEGDVLARLSVRAEETFETISIIRQVLENMPGGPIQAEVKEYRPY------------ 466
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
VEAP+GE ++I+ +K YR ++RA Y + A
Sbjct: 467 -------------------ARGLGYVEAPRGEDVHFVITGPHSKVYRWRVRASTYNNWPA 507
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ ++C+G+ LAD+ I+GS+D + +R
Sbjct: 508 IPYMCRGYTLADLPLIIGSIDPCYSCTER 536
>gi|312129262|ref|YP_003996602.1| NADH dehydrogenase subunit d [Leadbetterella byssophila DSM 17132]
gi|311905808|gb|ADQ16249.1| NADH dehydrogenase subunit D [Leadbetterella byssophila DSM 17132]
Length = 402
Score = 340 bits (872), Expect = 3e-91, Method: Composition-based stats.
Identities = 156/401 (38%), Positives = 223/401 (55%), Gaps = 28/401 (6%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ +N GPQHP+ HGVLRL ++ DGE+++ V PH+G LHR EK E+ F Q
Sbjct: 24 EDLAEEEMILNVGPQHPSTHGVLRLEVKTDGELIKEVVPHLGYLHRCFEKHAESLPFPQV 83
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+P+ DRLDY+A MN EHAY + VEK+L +++P R + IRVL +E+ RI SH L + + A+
Sbjct: 84 IPFVDRLDYLASMNSEHAYVMGVEKMLDLQMPQRVEYIRVLVAELNRIASHFLAIGSYAL 143
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D+GA TP LW F +RE ++ E SG R+ Y GG+ D+P E +
Sbjct: 144 DIGAQTPFLWLFRDRETILRMLEWVSGGRLLYNYIWIGGLFYDLPVGFEEKCKEFTAYVR 203
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
L ++ ++ N +F R +G + L+ A +G +G ++RGSG +DLRK Y Y
Sbjct: 204 PKLVELQQIIIDNHLFINRTAGVGVLPLDLAINYGCTGPVLRGSGLRYDLRKVDGYSVYP 263
Query: 242 ELDFDIPI-----GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKI 296
ELDFDIP+ GK GD +DR VR++E ES+KII QC+ +LL + DP+
Sbjct: 264 ELDFDIPVGEGKMGKVGDSWDRNYVRLLECFESLKIIDQCLEKLLK--EHKRTRDFDPQA 321
Query: 297 VPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG-GNKPYRC 355
+ PK+ + Y E PKGE G + +DG + P R
Sbjct: 322 LVPKK--------------------IRPKAMDFYVRAENPKGELGFFFRTDGKSDTPLRV 361
Query: 356 KIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
K RA + +L + L K +AD+ AI+GSLD+V GEVDR
Sbjct: 362 KCRACSFHNLSVLPALSKNILMADLIAIVGSLDLVMGEVDR 402
>gi|261885719|ref|ZP_06009758.1| NADH-quinone oxidoreductase chain c/d [Campylobacter fetus subsp.
venerealis str. Azul-94]
Length = 473
Score = 340 bits (872), Expect = 3e-91, Method: Composition-based stats.
Identities = 147/395 (37%), Positives = 218/395 (55%), Gaps = 4/395 (1%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
D+ K++ +N GP HPA HG +R + LDGE + IG LHRG EK E ++ Q
Sbjct: 83 DEFKTKYTFLNIGPSHPATHGTIRNFVALDGEKIISCVTEIGYLHRGFEKACENHSYAQI 142
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+PY DRL+Y + M YA AVE+ LG+ +P RG +RV+ E+ RI+ H + + +
Sbjct: 143 IPYTDRLNYCSAMLNNVGYAKAVEEALGLNLPDRGIFMRVILGELARIIDHEVCLGAMFV 202
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D+G LT + + RE++ F + +G+R ++ R GG+ D E++
Sbjct: 203 DMGGLTNYWYLYNPRERIYNFLSKLTGARFTNSFARIGGMANDFYDGWKEELLAHLKDVE 262
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
++D L+ NRIF R NI + DA +GFSG +R SG ++DLRK +PY Y
Sbjct: 263 KGVDDTMILIEKNRIFLDRVQNICKINANDALSYGFSGPNLRASGVSFDLRKDKPYYYYD 322
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF +P+G GD DR VR +MRES+ IIRQ + + G +S D + P +
Sbjct: 323 SFDFSVPVGSEGDISDRMFVRFSQMRESISIIRQAIKLI----PEGKISVDDKDVFLPSK 378
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ ++ESLI+HFKL +G +P G Y+A E GE G ++ S+ PYR K+R P
Sbjct: 379 DQVYSNIESLINHFKLIFDGIKLPNGHFYSASEGANGELGFFIFSNSEPNPYRVKLRPPC 438
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ L A + +G +AD LGSL+I+ GE+DR
Sbjct: 439 FYALNAFSSMVQGSLIADSILNLGSLNIIAGELDR 473
>gi|289582899|ref|YP_003481365.1| NADH-ubiquinone oxidoreductase chain 49kDa [Natrialba magadii ATCC
43099]
gi|289532452|gb|ADD06803.1| NADH-ubiquinone oxidoreductase chain 49kDa [Natrialba magadii ATCC
43099]
Length = 560
Score = 339 bits (871), Expect = 3e-91, Method: Composition-based stats.
Identities = 157/402 (39%), Positives = 220/402 (54%), Gaps = 32/402 (7%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFL-QA 61
+S + +N GP HPA HGVL + LDGE V V+P IG LHR E++ E T+ Q
Sbjct: 183 DAESDTMFLNIGPHHPATHGVLHVKTVLDGETVADVEPDIGYLHRCEEQMCEQGTYRHQI 242
Query: 62 VPYFDRLDYVA-PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY DR DYV+ + E AYA A+E L IE+P Q+IR + +E+ RI SH+L + T A
Sbjct: 243 MPYPDRWDYVSAGLLNEWAYARAIEDLADIEVPEYAQIIRTMGAELCRIASHMLALGTFA 302
Query: 121 MDVG--ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP---ELVEDIGC 175
+DV ++ F +RE + E +G RM YFR GGV D+P E E
Sbjct: 303 LDVYGEFTATFMYTFRDREVIQDILEDLTGQRMMFNYFRVGGVAWDLPEPREEFFELTRE 362
Query: 176 WCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQ 235
+ + P+ + + +DL+TGN IF+ R ++ G ++ E A +G +G + RGSG +DLR+
Sbjct: 363 FLNELPAKVAEYNDLITGNEIFQTRCIDTGVLEPEVAKDYGCTGPVARGSGVDYDLRRDD 422
Query: 236 PYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPK 295
PY Y +LD+D+ D Y R L RM E+ ES KII QC++ L
Sbjct: 423 PYGYYEQLDWDVITRDGADNYARVLCRMEEVEESAKIIEQCLDLL--------------- 467
Query: 296 IVPPKRADMKRSMESLIHHFKLYTEGYHVPVG-EVYAAVEAPKGEFGVYLISDGGNKPYR 354
+ E G E+Y AVE KGE G+Y+ SDG +KP R
Sbjct: 468 ---------EDWPEDERDVQANVPRTLKPDAGTEIYRAVEGAKGELGIYIRSDGSDKPGR 518
Query: 355 CKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
KIR+P +++LQA+E + +G + D+ A LGSLDIV GEVDR
Sbjct: 519 FKIRSPCFSNLQALEEMSEGEYIPDLIASLGSLDIVLGEVDR 560
>gi|21221820|ref|NP_627599.1| NADH dehydrogenase subunit NuoD2 [Streptomyces coelicolor A3(2)]
gi|256787001|ref|ZP_05525432.1| NADH dehydrogenase subunit NuoD2 [Streptomyces lividans TK24]
gi|289770894|ref|ZP_06530272.1| NADH-quinone oxidoreductase subunit D 1 [Streptomyces lividans
TK24]
gi|81789673|sp|Q9X853|NUOD1_STRCO RecName: Full=NADH-quinone oxidoreductase subunit D 1; AltName:
Full=NADH dehydrogenase I subunit D 1; AltName:
Full=NDH-1 subunit D 1
gi|4585838|emb|CAB40932.1| putative NADH dehydrogenase subunit NuoD2 [Streptomyces coelicolor
A3(2)]
gi|289701093|gb|EFD68522.1| NADH-quinone oxidoreductase subunit D 1 [Streptomyces lividans
TK24]
Length = 383
Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats.
Identities = 135/394 (34%), Positives = 203/394 (51%), Gaps = 28/394 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+S +N GPQHP+ HGVLRL L LDGE + +P IG +HRG EKL E + + Q +
Sbjct: 15 AESTDMVLNIGPQHPSTHGVLRLKLVLDGERITSAEPVIGYMHRGAEKLFEARDYRQIIM 74
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+R D+++ + E LAVE++LG+E+P R R L +E+ R+L+HL+ + + +++
Sbjct: 75 LANRHDWLSAFSNELGVVLAVERMLGMEVPTRAVWTRTLLAELNRVLNHLMFLGSYPLEL 134
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP + F ERE L E SG RMH + R GG+ +D+P + S
Sbjct: 135 GGITPVFYAFREREVLQNVMEEVSGGRMHYMFNRVGGLKEDLPAGWTTRARGAVAAVRSR 194
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE- 242
++ DL+ GN IF+ R +G + E +G SG + R SG +DLR+ +PY Y E
Sbjct: 195 MDVFDDLVLGNEIFRGRTRGVGALSAEAVHAYGVSGPVARASGVDFDLRRDEPYLAYGEL 254
Query: 243 -LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ GDC R+ + + ++ + C++RL GPV+ PK++
Sbjct: 255 QDTLKVVTRTDGDCLARFECLLAQTHNALDLADACLDRLAELAP-GPVNQRLPKVL---- 309
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
P G YA E P G G YL+S G PYR K+R+
Sbjct: 310 ---------------------KAPEGHTYAWTENPLGINGYYLVSKGEKTPYRLKLRSAS 348
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
Y ++QA+ L G +AD+ AILGSL V G++D
Sbjct: 349 YNNIQALAELLPGTLVADMVAILGSLFFVVGDID 382
>gi|212224172|ref|YP_002307408.1| Hydrogenase 4, subunit 5 [Thermococcus onnurineus NA1]
gi|212009129|gb|ACJ16511.1| Hydrogenase 4, subunit 5 [Thermococcus onnurineus NA1]
Length = 540
Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats.
Identities = 113/394 (28%), Positives = 169/394 (42%), Gaps = 32/394 (8%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETK-TFLQA 61
+ K I GP HP+ H L + G+ V + +HRG EKL E++ T Q
Sbjct: 153 EHKKDVMEIPLGPYHPSLHEPEYFELYVKGDKVVDAEYRGFHIHRGMEKLAESRMTINQI 212
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+R+ + AY AVE GI +P R Q IR + E+ RI SHLL
Sbjct: 213 PFLAERICGICGCTHSAAYCQAVEDAAGIYVPERAQYIRTIMLEVERIHSHLLWFGVVCH 272
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
+G + + + RE +M E +G+R GGV +DI + E D
Sbjct: 273 LLGFDSGFMHIWRAREYIMDIAELITGNRKTYGINIVGGVRRDITEDKKEKTLKLLDMVE 332
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
++ D + + ++R +G + ++A G G M R SG D+R+ PY Y
Sbjct: 333 KESREVLDNIAEMKELRERMEGVGVLPKKEAREIGVVGPMARSSGIDTDVRRDHPYAAYK 392
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+LDF +P+ K GD + R+LVR E+ ES +IRQ + +
Sbjct: 393 DLDFKVPVYKEGDVFARFLVRYEEIFESFNMIRQALENMPPGE----------------- 435
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ E I FKL EAP+GE +I+ G N YR RA
Sbjct: 436 ---LINDEYEIPPFKL-----------GIGVTEAPRGENIHAVITWGENMIYRWHPRAAT 481
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
Y +L A+ + +G+ +AD I+ S+D F D
Sbjct: 482 YNNLPAVPIMLRGNDVADAPLIIASIDPCFSCTD 515
>gi|256397517|ref|YP_003119081.1| NADH dehydrogenase (quinone) [Catenulispora acidiphila DSM 44928]
gi|256363743|gb|ACU77240.1| NADH dehydrogenase (quinone) [Catenulispora acidiphila DSM 44928]
Length = 390
Score = 339 bits (869), Expect = 5e-91, Method: Composition-based stats.
Identities = 137/395 (34%), Positives = 211/395 (53%), Gaps = 30/395 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHPA HGVLRL L LDGE + DP IG +HRG EKL E + + Q +
Sbjct: 21 ETTDMVLNIGPQHPATHGVLRLRLVLDGERIVSADPIIGYMHRGAEKLFEVRDYRQIIVL 80
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
+R D+++ E LAVE++LG+E+P R R L +E+ RIL+HL+ + + +++G
Sbjct: 81 ANRHDWLSAFASELGVVLAVERMLGMEVPERATWARTLLAELNRILNHLMFLGSYPLELG 140
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A+TP + F ERE++ E SG RMH + R GG+ ++P + + + S +
Sbjct: 141 AITPIFYAFREREEIQAVMEEISGGRMHFMFNRVGGLKDELPLGWTDRVRAAIATVRSRM 200
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+DI L+TGN IF+ R +G + E +G SG + R SG +DLR+ PY Y E +
Sbjct: 201 SDIDRLITGNEIFRARTRGVGVLTPEQIAAYGVSGPIARASGVDFDLRRDDPYLAYGEPE 260
Query: 245 F----DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+ G+ GDC R+ V + + S+ I + C ++L GP++ PKI+
Sbjct: 261 VREKLKVVTGRGGDCLARFEVLLEQAYNSLDIAQACADKL-DTLPTGPINQRLPKIL--- 316
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
VP G YA E P G G +L+S G P+R K+R+
Sbjct: 317 ----------------------KVPEGHTYAWTENPLGINGYFLVSHGDKTPWRLKLRSA 354
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ ++Q + + GH ++D+ AILGS+ V G+VD
Sbjct: 355 SFNNIQVLAEVLPGHLVSDMVAILGSMFFVVGDVD 389
>gi|332702767|ref|ZP_08422855.1| NAD(P)H-quinone oxidoreductase subunit H [Desulfovibrio africanus
str. Walvis Bay]
gi|332552916|gb|EGJ49960.1| NAD(P)H-quinone oxidoreductase subunit H [Desulfovibrio africanus
str. Walvis Bay]
Length = 384
Score = 339 bits (869), Expect = 6e-91, Method: Composition-based stats.
Identities = 149/391 (38%), Positives = 216/391 (55%), Gaps = 28/391 (7%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+ +N GPQHP+ HGVLR+I+ELDGE V R +P +G +HR EK+ E KT+ Q P
Sbjct: 21 DTLILNLGPQHPSTHGVLRIIVELDGEYVLRAEPVLGYVHRMHEKMGEVKTWAQYYPNLG 80
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+DY+ P+ Y AVEKL G+E+P R + IRV+ +E+ RI SHLL +D+GA+
Sbjct: 81 RVDYLHPLAWNWGYVGAVEKLAGLEVPERAEFIRVIVTELNRIKSHLLWWGAYLLDLGAV 140
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP ++ F + E L +R +GSR+ YFR GG+ D+ + I + L
Sbjct: 141 TPIMYAFMDIENLNDILQRPTGSRLTYCYFRFGGLSADLDDTTLGMIRDFVPHMRGRLPM 200
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
DL+T N I + R N+G L+ +G +G +RGSG A+D+R+++PY Y LDF+
Sbjct: 201 YKDLVTDNVILRNRLENVGEFSLDLCQRYGVTGPCLRGSGKAYDIRRAEPYGVYDRLDFE 260
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
IP DC RYLVRM E+ +S++II Q + + +
Sbjct: 261 IPTYPQTDCMGRYLVRMDEIEQSLRIIEQAMKMMPAGD---------------------- 298
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNK-PYRCKIRAPGYAHL 365
H K + P GEVY AVE+ +G+ G +++SDG + PYR K+R+P + +L
Sbjct: 299 -----YIHPKAPKAKWTAPRGEVYFAVESARGKVGFWIVSDGKGRNPYRVKLRSPCFCNL 353
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+G LAD A LGSLD+V E+DR
Sbjct: 354 SCFAEAAQGTLLADAVATLGSLDLVIPELDR 384
>gi|302544367|ref|ZP_07296709.1| NADH dehydrogenase I, D subunit [Streptomyces hygroscopicus ATCC
53653]
gi|302461985|gb|EFL25078.1| NADH dehydrogenase I, D subunit [Streptomyces himastatinicus ATCC
53653]
Length = 387
Score = 338 bits (868), Expect = 7e-91, Method: Composition-based stats.
Identities = 130/394 (32%), Positives = 206/394 (52%), Gaps = 28/394 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+S +N GPQHP+ HGVLRL L +DGE V+ +P IG +HRG EKL E + + Q +
Sbjct: 19 AESTDMVLNIGPQHPSTHGVLRLRLVVDGERVQHAEPVIGYMHRGAEKLFEARDYRQIIM 78
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+R D+++ + E LAVE++LG+E+P R +R L +E+ R+L+HL+ + + +++
Sbjct: 79 LANRHDWLSAFSNELGVVLAVERMLGMEVPERAVWVRTLLAELNRVLNHLMFLGSYPLEL 138
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP F ERE L E SG RMH + R GG+ +D+P + S
Sbjct: 139 GGITPIFHAFREREDLQHVMEEISGGRMHYMFNRVGGLKEDLPAGWLGRARAAVAEVRSR 198
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE- 242
++ L+ GN IF+ R +G + + +G SG + R SG +DLR+ +PY Y +
Sbjct: 199 MDVYDGLVLGNEIFRGRTRGVGNLSAKAVHAYGVSGPIARASGVDFDLRRDEPYLAYGDL 258
Query: 243 -LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ + + GDC R+ + + S+ + C++R+ + GP++ PK++
Sbjct: 259 QDTLKVVVREEGDCLARFECLLEQTHNSLALADACLDRI-AELPPGPINQRLPKVL---- 313
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
P G YA E P G G YL+S G PYR K+R+
Sbjct: 314 ---------------------KAPEGHTYAWTENPLGLNGYYLVSKGEKTPYRLKLRSAS 352
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ ++QA+ L G +AD+ AILGSL V G++D
Sbjct: 353 FNNIQALTELLPGTLVADMVAILGSLFFVVGDID 386
>gi|114329914|ref|YP_740816.1| NADH dehydrogenase subunit 7 [Tetrahymena pigmentosa]
gi|114150147|gb|ABI51725.1| NADH dehydrogenase subunit 7 [Tetrahymena pigmentosa]
Length = 441
Score = 338 bits (868), Expect = 7e-91, Method: Composition-based stats.
Identities = 200/424 (47%), Positives = 275/424 (64%), Gaps = 28/424 (6%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
++ K+ ++ +NFGPQHPAAHGVLRLIL+L+GEI ER DPHIGLLHRG+EKLIE + +LQ
Sbjct: 18 VNSKQIKTMNVNFGPQHPAAHGVLRLILQLNGEIAERFDPHIGLLHRGSEKLIEDRPYLQ 77
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIE-IPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+PYFDR DYV+ M QEHAY L +E LLG IR +Y E+ RIL+HLL V
Sbjct: 78 GMPYFDRFDYVSMMVQEHAYCLGIESLLGTTNYSATFTQIRTMYDELTRILNHLLAVACH 137
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELV-EDIGCWCD 178
A+DVG+++ W FEEREKLM FYER G+RMHAA++RP V+ + + EDI +
Sbjct: 138 ALDVGSMSSVFWAFEEREKLMEFYERVCGARMHAAFYRPNEVNLNAISSFLLEDILEFSR 197
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLR--KSQP 236
+F + LN++ ++LT N+I+KQR +NIGT + +G +GVM R G DLR K++
Sbjct: 198 NFFTTLNEMHNVLTYNKIWKQRLINIGTYSFQTCLDYGLTGVMARSCGIKRDLRLSKTET 257
Query: 237 YECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKI 296
Y Y L+F IG+HGDCYDR+L+RM EM ES+ I+ Q +N++ N + ++ ++
Sbjct: 258 YANYYYLNFRSYIGQHGDCYDRFLIRMNEMCESLNIVNQSINKISKYNNIKNINNNNNIS 317
Query: 297 VPPKRADM------------------------KRSMESLIHHFKLYTEGYHVPVGEVYAA 332
+ SME LI+HFK +++G V G + +
Sbjct: 318 NNNFNKNTTILPHLVLNYLNKNEVNIKNTKNDYNSMEELINHFKFWSKGVLVESGYTFQS 377
Query: 333 VEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFG 392
VE+PKGEFGV ++SDG NKPY+CK+R+P Y HLQ M + KGH LAD+ ++G++DIVFG
Sbjct: 378 VESPKGEFGVSMLSDGSNKPYKCKVRSPAYHHLQVMPKIGKGHFLADLVTLVGTVDIVFG 437
Query: 393 EVDR 396
EVDR
Sbjct: 438 EVDR 441
>gi|320161604|ref|YP_004174829.1| NADH-ubiquinone oxidoreductase, chain 49kDa family protein
[Anaerolinea thermophila UNI-1]
gi|319995458|dbj|BAJ64229.1| NADH-ubiquinone oxidoreductase, chain 49kDa family protein
[Anaerolinea thermophila UNI-1]
Length = 393
Score = 338 bits (868), Expect = 7e-91, Method: Composition-based stats.
Identities = 118/390 (30%), Positives = 184/390 (47%), Gaps = 31/390 (7%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
R F + GPQHPA +DGEIV +G +HRG EK E ++++Q + F+
Sbjct: 5 RKFIVPIGPQHPALKEPGHFEFTVDGEIVTDASVRLGYVHRGIEKGAEERSWIQDLYLFE 64
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+ + A+AL VE+L G+E P R Q IR L +E+ RI SH+L + A + G
Sbjct: 65 RVCGICSHVHATAFALGVERLAGVEAPPRAQAIRSLVAEMERIHSHMLWLGVAAHEGGFD 124
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
T ++ + +RE +M E +G+R++ + GGV DI L + I D +
Sbjct: 125 TLFMYSWRDREIVMDLLEALTGNRVNYSANVLGGVKCDITDTLRDQILRGMDQLEERIQH 184
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+++T +R F R +G + E A +G G R SG D+R PY Y +
Sbjct: 185 YLNVVTTDRTFLARTEGVGRMTREQADLFGAVGPTARASGVPRDVRVDAPYAFYPTVPVQ 244
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ + GD R++VR+ E+ E+V++IR+ + L
Sbjct: 245 LITDERGDLLARFVVRIKELFEAVRLIREILAHLPE------------------------ 280
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+P GEV + VEAP+GE ++ S+GG KP R K+R P +
Sbjct: 281 -------GELTVRMPRRIPAGEVISRVEAPRGELFYFIKSNGGEKPERVKVRTPSLCNWG 333
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ + GH+LAD+ IL +D F DR
Sbjct: 334 SVMQVAVGHKLADMPMILAGIDPCFSCNDR 363
>gi|157954629|gb|ABW05546.1| formate hydrogenlyase subunit F [Thermococcus litoralis DSM 5473]
Length = 546
Score = 338 bits (868), Expect = 7e-91, Method: Composition-based stats.
Identities = 118/395 (29%), Positives = 180/395 (45%), Gaps = 32/395 (8%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETK-TFLQA 61
+ S GP H A L + GE + VD HRG EKL + + Q
Sbjct: 159 EPPKDSTVHPMGPYHVALDEPAHFRLFVKGEEIVDVDYRGFYSHRGIEKLARGRLNYNQI 218
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
V +R+ + AYA AVE+ IE+P R + IR + EI R+ SHLL + A
Sbjct: 219 VFIAERICGICGFAHSVAYAQAVEEAGRIEVPDRARYIRTILLEIERLHSHLLWLGIAAH 278
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
G T + +E REK+M ER +G+R GGV +D+ I +
Sbjct: 279 LTGFDTAFMRSWEIREKVMELAERLTGNRKTYGLVLVGGVRRDLLDYRKSLILETLKNLK 338
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
++ D+L + F +R IG + E A W +G + R SG +D RKS Y Y
Sbjct: 339 KDFDEFVDMLISTKSFVRRCEGIGVLPKEKAREWDTAGPLARASGIDYDTRKSLSYAAYD 398
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
EL FD+P+ K GD R LVR+ E+RES+ ++ Q ++ + G +G +
Sbjct: 399 ELSFDVPVYKEGDVLARALVRIDEVRESISLLEQAIDAIPGGPVMGEFNEIPSWR----- 453
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
E +AVEAP+GE Y+++ N+ YR +++AP
Sbjct: 454 --------------------------EGISAVEAPRGENTHYVMTGEVNRIYRWRVKAPT 487
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Y +LQA+ + +G+ +AD I+ S+D + +R
Sbjct: 488 YNNLQAVPDMLRGYTIADAPLIVASIDPCYSCTER 522
>gi|239942213|ref|ZP_04694150.1| putative NADH dehydrogenase chain D [Streptomyces roseosporus NRRL
15998]
gi|239988679|ref|ZP_04709343.1| putative NADH dehydrogenase chain D [Streptomyces roseosporus NRRL
11379]
Length = 380
Score = 338 bits (868), Expect = 7e-91, Method: Composition-based stats.
Identities = 134/394 (34%), Positives = 207/394 (52%), Gaps = 28/394 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+S +N GPQHP+ HGVLRL + LDGE V+ +P IG +HRG EKL E + + Q V
Sbjct: 12 AESTDMVLNIGPQHPSTHGVLRLRIVLDGERVQHAEPVIGYMHRGAEKLFEARDYRQIVM 71
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+R D+++ + E +AVE++LG+E+P R R L +E+ R+L+HL+ + + +++
Sbjct: 72 LANRHDWLSAFSNELGVVMAVERMLGMEVPERAVWTRTLLAELNRVLNHLMFLGSYPLEL 131
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP F ERE+L E SG RMH + R GG+ +DIP + S S
Sbjct: 132 GGITPVFHAFREREELQAVMEEVSGGRMHYMFNRVGGLKEDIPAGWTGRVRDAVASVRSR 191
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE- 242
++ +L+ GN IF+ R ++G + + +G SG + R SG +DLR+ +PY Y E
Sbjct: 192 MDVYENLVLGNEIFRGRTRDVGVLSADAVHAYGVSGPIARASGVDFDLRRDEPYLAYGEL 251
Query: 243 -LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ GDC R+ + + S+ + C++R+ G GP++ PK++
Sbjct: 252 RDTLKVVTRTEGDCLARFECLLEQTLNSLDLADACLDRMAGLAP-GPINQRLPKVL---- 306
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
P G YA E P G G YL+S G PYR K+R+
Sbjct: 307 ---------------------KAPEGHTYAWTENPLGVNGYYLVSKGEKTPYRLKLRSAS 345
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ ++QA+ L G +AD+ AILGSL V G++D
Sbjct: 346 FNNIQALTELLPGTLVADMVAILGSLFFVVGDID 379
>gi|150004311|ref|YP_001299055.1| NADH dehydrogenase I, chain D [Bacteroides vulgatus ATCC 8482]
gi|254883414|ref|ZP_05256124.1| NADH dehydrogenase subunit I [Bacteroides sp. 4_3_47FAA]
gi|294776878|ref|ZP_06742341.1| respiratory-chain NADH dehydrogenase, 49 Kd subunit [Bacteroides
vulgatus PC510]
gi|319644246|ref|ZP_07998759.1| NADH dehydrogenase subunit I [Bacteroides sp. 3_1_40A]
gi|218534453|sp|A6L169|NUOD_BACV8 RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|149932735|gb|ABR39433.1| NADH dehydrogenase I, chain D [Bacteroides vulgatus ATCC 8482]
gi|254836207|gb|EET16516.1| NADH dehydrogenase subunit I [Bacteroides sp. 4_3_47FAA]
gi|294449354|gb|EFG17891.1| respiratory-chain NADH dehydrogenase, 49 Kd subunit [Bacteroides
vulgatus PC510]
gi|317384237|gb|EFV65209.1| NADH dehydrogenase subunit I [Bacteroides sp. 3_1_40A]
Length = 519
Score = 338 bits (867), Expect = 8e-91, Method: Composition-based stats.
Identities = 149/392 (38%), Positives = 214/392 (54%), Gaps = 29/392 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ IN GPQHPA HGVLR + L+GEI++++D H G +HRG EK+ E+ T+ Q +
Sbjct: 157 DEDEYIINIGPQHPATHGVLRFRVSLEGEIIKKLDVHCGYIHRGIEKMCESLTYPQTLAL 216
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDY+ HA + +E+ +G+E+ R Q IR + E+ RI SHLL + MD+G
Sbjct: 217 TDRLDYLGAHQNRHALCMCIEQAMGVEVSERVQYIRTIMDELQRIDSHLLFFSCLCMDMG 276
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
ALT +GF +REK++ +E +G R+ Y GGV DI P+ V+ + + L
Sbjct: 277 ALTAFFYGFRDREKILDIFEATTGGRLIQNYNTIGGVQADIAPDFVQKVKEFIAYLRPML 336
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ ++ TGN I ++R +G + EDA +G +G R SG A D+RK PY Y ++D
Sbjct: 337 KEYHEVFTGNVIAQERLKGVGVLSREDAISFGATGGTGRASGWACDVRKRHPYAMYGKVD 396
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F + GDC+ RY+VRM E+ ES+ II Q ++ + N M
Sbjct: 397 FKEIVHTEGDCFARYMVRMEEILESMDIIEQLIDNIPEGNYQ---------------EKM 441
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K VP G YAAVE +GEFGVYL S G PYR K RA G
Sbjct: 442 K--------------PIIRVPEGNYYAAVEGSRGEFGVYLESRGDKFPYRMKFRATGLPL 487
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ AME +C+ ++AD+ AI G++D V ++DR
Sbjct: 488 VSAMETMCRNAKIADLIAIGGTVDYVVPDIDR 519
>gi|256425965|ref|YP_003126618.1| NADH dehydrogenase (quinone) [Chitinophaga pinensis DSM 2588]
gi|256040873|gb|ACU64417.1| NADH dehydrogenase (quinone) [Chitinophaga pinensis DSM 2588]
Length = 404
Score = 338 bits (867), Expect = 9e-91, Method: Composition-based stats.
Identities = 148/391 (37%), Positives = 217/391 (55%), Gaps = 1/391 (0%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ ++ T+N GP HPA HGV + ILE+DGE + + +G +HR EK+ E + + Q P
Sbjct: 14 ERQTQTLNLGPTHPATHGVFQNILEIDGERIVSSESTVGYIHRAFEKIAERRPYYQITPL 73
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRL+Y + + + VEKLLGI+ P R +RV+ E+ RI HL+ +D G
Sbjct: 74 TDRLNYCSSPINNMGWHMTVEKLLGIQTPKRVDYLRVIIMELARITDHLICNGVVGVDSG 133
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A T L+ + RE + YE GSR+ R GG ++ P E I + +P AL
Sbjct: 134 AFTGFLYLMKYRELVYEIYEEICGSRLTTNIGRVGGFERNFTPAAFEKIERFLKEYPVAL 193
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ ++ NRIF +R +G + E A +GF+G +R +G +D+R +QPY Y + +
Sbjct: 194 KEFETMMNRNRIFMERTQGVGPISAERAINYGFTGPNLRAAGVDYDVRVAQPYCSYEDFE 253
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F IP+G GDCYDR+LVR EM ES+ IIRQ +++L A P P+++ +
Sbjct: 254 FTIPVGTTGDCYDRFLVRNAEMWESLSIIRQAMDKLKD-LPSDVYHADVPAYYLPEKSAV 312
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
ME+LI+HFK+ + GE+Y VE GE G YLISDGG PYR R P + +
Sbjct: 313 YTKMEALIYHFKIIMGESDILPGELYNPVEGANGELGFYLISDGGRSPYRLHFRRPCFIY 372
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
QA L KG L+D + SL+++ GE+D
Sbjct: 373 YQAYAELIKGAMLSDAVICMSSLNLIAGELD 403
>gi|119719978|ref|YP_920473.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Thermofilum pendens
Hrk 5]
gi|119525098|gb|ABL78470.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Thermofilum pendens
Hrk 5]
Length = 537
Score = 338 bits (867), Expect = 1e-90, Method: Composition-based stats.
Identities = 114/390 (29%), Positives = 188/390 (48%), Gaps = 29/390 (7%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
S + GP HPA L +DGE + + IG +HRG EK E+++F + + +
Sbjct: 151 ESVVVPVGPYHPAFKEPEYFSLVVDGERIVKAFVRIGFVHRGIEKAAESRSFFRDIFLVE 210
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+ + + + AVE+LL +E+P R +R L +E+ RI SH L + G
Sbjct: 211 RICGICSTSHAWCFVEAVERLLNMEVPRRAAYLRTLVAELERIHSHALWLGLVGYWTGFE 270
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
T +W + RE +M E SG+R+H ++ GGV +D+P L+ + ++F
Sbjct: 271 TMFMWVWGLRETIMDLLEEISGNRVHKSFVTIGGVRRDVPDALLRRVSERVETFRREFES 330
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ + L+ + R IG L+DA + G + R +G +D+R+ +PY Y E++F+
Sbjct: 331 LLESLSYSEEIISRTKGIGRYSLDDARKYCAVGPVRRAAGDPFDVRRIEPYGAYPEVEFE 390
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+P GD Y+ VR+ E+ ES II+Q V ++ N V P
Sbjct: 391 VPTSNEGDVYNLIRVRVKEVVESASIIQQLVEKMPSGNPVPPKPFMG------------- 437
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
VP GE Y+ +EAP+GE Y+ ++ + PYR K+R P A++Q
Sbjct: 438 ----------------TVPEGEAYSRIEAPRGELFYYVKANNTHNPYRVKVRTPTLANIQ 481
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +G L+D ++ S+D F +DR
Sbjct: 482 LAAKILEGQTLSDFPVVVTSIDPCFSCMDR 511
>gi|291445667|ref|ZP_06585057.1| NADH dehydrogenase I chain D [Streptomyces roseosporus NRRL 15998]
gi|291348614|gb|EFE75518.1| NADH dehydrogenase I chain D [Streptomyces roseosporus NRRL 15998]
Length = 383
Score = 338 bits (867), Expect = 1e-90, Method: Composition-based stats.
Identities = 134/394 (34%), Positives = 207/394 (52%), Gaps = 28/394 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+S +N GPQHP+ HGVLRL + LDGE V+ +P IG +HRG EKL E + + Q V
Sbjct: 15 AESTDMVLNIGPQHPSTHGVLRLRIVLDGERVQHAEPVIGYMHRGAEKLFEARDYRQIVM 74
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+R D+++ + E +AVE++LG+E+P R R L +E+ R+L+HL+ + + +++
Sbjct: 75 LANRHDWLSAFSNELGVVMAVERMLGMEVPERAVWTRTLLAELNRVLNHLMFLGSYPLEL 134
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP F ERE+L E SG RMH + R GG+ +DIP + S S
Sbjct: 135 GGITPVFHAFREREELQAVMEEVSGGRMHYMFNRVGGLKEDIPAGWTGRVRDAVASVRSR 194
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE- 242
++ +L+ GN IF+ R ++G + + +G SG + R SG +DLR+ +PY Y E
Sbjct: 195 MDVYENLVLGNEIFRGRTRDVGVLSADAVHAYGVSGPIARASGVDFDLRRDEPYLAYGEL 254
Query: 243 -LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ GDC R+ + + S+ + C++R+ G GP++ PK++
Sbjct: 255 RDTLKVVTRTEGDCLARFECLLEQTLNSLDLADACLDRMAGLAP-GPINQRLPKVL---- 309
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
P G YA E P G G YL+S G PYR K+R+
Sbjct: 310 ---------------------KAPEGHTYAWTENPLGVNGYYLVSKGEKTPYRLKLRSAS 348
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ ++QA+ L G +AD+ AILGSL V G++D
Sbjct: 349 FNNIQALTELLPGTLVADMVAILGSLFFVVGDID 382
>gi|297159343|gb|ADI09055.1| NADH dehydrogenase I chain D [Streptomyces bingchenggensis BCW-1]
Length = 380
Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats.
Identities = 133/394 (33%), Positives = 206/394 (52%), Gaps = 28/394 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+S +N GPQHP+ HGVLRL L LDGE ++ +P IG +HRG EKL E + + Q +
Sbjct: 12 AESTDMVLNIGPQHPSTHGVLRLRLVLDGERIQSAEPVIGYMHRGAEKLFEARDYRQIIM 71
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+R D+++ + E LAVE++LG+E+P R R L +E+ R+L+HL+ + + +++
Sbjct: 72 LANRHDWLSAFSNELGVVLAVERMLGMEVPERAVWTRTLLAELNRVLNHLMFLGSYPLEL 131
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP + F ERE L E SG RMH + R GG+ +D+P + S
Sbjct: 132 GGITPIFYAFREREDLQHVMEEVSGGRMHYMFNRVGGLKEDLPAGWLGRARQAVAEVRSR 191
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE- 242
++ L+ GN IF+ R +G + E +G SG + R SG +DLR+ +PY Y E
Sbjct: 192 MDVYDQLVLGNEIFRGRTRGVGALARETVHAYGVSGPIARASGVDFDLRRDEPYLAYGEL 251
Query: 243 -LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ + + GDC R+ + + S+ + C++R+ + GP++ PK++
Sbjct: 252 RDTLKVVVREEGDCLARFECLLEQTHNSLDLADACLDRI-AELPPGPINQRLPKVL---- 306
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
P G YA E P G G YL+S G PYR K+R+
Sbjct: 307 ---------------------KAPEGHTYAWTENPLGLNGYYLVSKGEKTPYRLKLRSAS 345
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
Y ++QA+ L G +AD+ AILGSL V G++D
Sbjct: 346 YNNIQALTELLPGTLVADMVAILGSLFFVVGDID 379
>gi|296241800|ref|YP_003649287.1| NADH dehydrogenase subunit C [Thermosphaera aggregans DSM 11486]
gi|296094384|gb|ADG90335.1| NADH dehydrogenase subunit C [Thermosphaera aggregans DSM 11486]
Length = 545
Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats.
Identities = 116/389 (29%), Positives = 176/389 (45%), Gaps = 35/389 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETK-TFLQAVPYFDRL 68
T+ GP HPA H L ++GE V V +HRG EKL E++ T+ Q +R+
Sbjct: 169 TVPVGPYHPALHEPEYFELYVEGEKVVDVKYRGFHVHRGIEKLGESRMTYQQVNFLAERI 228
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+ YALAVEK +++P R Q IR + E+ R+ SHLL + VG
Sbjct: 229 CGICGFEHSTCYALAVEKAAKLDVPERAQFIRSIILEVERLHSHLLWLGVAFHLVGYDAG 288
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
+ + REK+M E +GSR GGV +DI E I D+ ++
Sbjct: 289 FMHMWRIREKVMYLSEYLTGSRKTYGINLVGGVRKDINEEKKPKILETLDTLEKEFKELV 348
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
+ T K+R G + EDA G G + R SG D R+ PY Y + F +P
Sbjct: 349 GIATSVPQVKRRLTGTGILPREDAVKLGVEGPVARASGVDRDARRDLPYAAYKHVSFKVP 408
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
+ GD R LVR+ E+ ES+ +I+Q ++++ GP+
Sbjct: 409 VYTEGDNMARTLVRVDEVFESISMIKQLLDQM----PKGPIRL----------------- 447
Query: 309 ESLIHHFKLYTEGYHVPVGE-VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
E + +P G+ VEAP+G ++++ G KPYR ++RAP Y ++ A
Sbjct: 448 -----------EEFDIPPGKIGVQVVEAPRGGDIHFVVT-GEGKPYRWRVRAPTYNNIPA 495
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + + LAD + S+D F DR
Sbjct: 496 LRVMLRDQPLADAPLTIASIDPCFSCTDR 524
>gi|118579034|ref|YP_900284.1| NADH dehydrogenase (ubiquinone) [Pelobacter propionicus DSM 2379]
gi|118501744|gb|ABK98226.1| NADH dehydrogenase (ubiquinone) [Pelobacter propionicus DSM 2379]
Length = 409
Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats.
Identities = 117/389 (30%), Positives = 181/389 (46%), Gaps = 31/389 (7%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
S TI GPQHPA + + GE + +G HRG EK E +T++Q + +R
Sbjct: 3 SVTIPIGPQHPALKEPANFSITVAGEKILHTSSRLGYNHRGMEKACEQRTYIQDLYLLER 62
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ + + +A AVE++ G+ +P R IR L E+ RI SHLL + ++G T
Sbjct: 63 ICGICSHSHSMCFAQAVEEIAGLNVPPRALYIRTLIGELERIHSHLLWLGVAGHEIGFDT 122
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
++ + +RE +M SG+R++ GGV +D+ E + D+
Sbjct: 123 LLMYSWRDRELVMDLLAMFSGNRVNYGINTIGGVRRDVSDEQIVKALNDIDALEERTKYY 182
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
D+ T F R +G + EDA G RGS D+R PY Y E+DF +
Sbjct: 183 IDIATTEPSFIARLAGVGYISHEDAVRLQAVGPTGRGSNVPHDMRACDPYAAYGEMDFKV 242
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
D Y R +VR++E+ ES +IIRQ + + GPVS P+ +
Sbjct: 243 ITDSSCDVYGRAVVRLLELMESYRIIRQALREMPD----GPVSVKAPRTI---------- 288
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
P G+ + VEAP+GE Y+ +G +KP R K+RA A++QA
Sbjct: 289 -----------------PAGDTVSRVEAPRGEDLHYVKGNGSDKPERVKVRASTLANIQA 331
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + + + LADV I+ ++D F DR
Sbjct: 332 VNKMMENNNLADVPIIIAAIDPCFSCTDR 360
>gi|110636933|ref|YP_677140.1| NADH dehydrogenase I subunit D [Cytophaga hutchinsonii ATCC 33406]
gi|123163845|sp|Q11XR6|NUOD1_CYTH3 RecName: Full=NADH-quinone oxidoreductase subunit D 1; AltName:
Full=NADH dehydrogenase I subunit D 1; AltName:
Full=NDH-1 subunit D 1
gi|110279614|gb|ABG57800.1| NADH dehydrogenase subunit D [Cytophaga hutchinsonii ATCC 33406]
Length = 392
Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats.
Identities = 166/400 (41%), Positives = 226/400 (56%), Gaps = 30/400 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K IN GPQHP+ HGVLRL + DGEIV+ V PH+G LHR EK E + Q +P+
Sbjct: 15 KRGEIIINMGPQHPSTHGVLRLEILTDGEIVKDVIPHMGYLHRCYEKHAEKLPYNQVIPF 74
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
DR+DY+A MN EHAYA+ VE++LGIE IP R + IRVL +E+ RI SH + + T +D
Sbjct: 75 VDRMDYLAAMNSEHAYAMGVERMLGIENDIPKRVEYIRVLVAELNRISSHFVAIGTYGLD 134
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA TP LW +RE + E SG+RM Y GG+ D+P E +
Sbjct: 135 IGAFTPFLWVMRDREHINRLLEWVSGARMLYNYIWVGGLFYDLPVGFEERCKDFISYLKP 194
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L ++ ++ N+IF +R NIG + L+ A +G +G M+R SG +DLRK Y Y E
Sbjct: 195 KLAELQKVIIDNKIFIERTANIGVLPLDLAINYGITGPMLRASGLKFDLRKVDAYSVYPE 254
Query: 243 LDFDIP-----IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIV 297
+DFDIP +G GDC+DR VR+ E ESVKII QC+ +LLG + DP+ +
Sbjct: 255 IDFDIPVGTGAVGTTGDCWDRTHVRVAECFESVKIIEQCLEKLLG--EHKRTREFDPQAI 312
Query: 298 PPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGN-KPYRCK 356
PK+ V + Y E PKGE G + + G P+RCK
Sbjct: 313 VPKK--------------------IRPKVMDFYVRAENPKGELGFFFRTTGNTDIPFRCK 352
Query: 357 IRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+RAP + +L ++ + K +AD+ AILGS DIV GE+DR
Sbjct: 353 VRAPSFVNLSVLQAISKNVMIADLVAILGSFDIVMGEIDR 392
>gi|297201412|ref|ZP_06918809.1| NADH dehydrogenase (quinone), D subunit [Streptomyces sviceus ATCC
29083]
gi|197713820|gb|EDY57854.1| NADH dehydrogenase (quinone), D subunit [Streptomyces sviceus ATCC
29083]
Length = 383
Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats.
Identities = 135/394 (34%), Positives = 205/394 (52%), Gaps = 28/394 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+S +N GPQHP+ HGVLRL L LDGE + +P IG +HRG EKL E + + Q +
Sbjct: 15 AESTDMVLNIGPQHPSTHGVLRLRLVLDGERIMSAEPVIGYMHRGAEKLFEARDYRQIIM 74
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+R D+++ + E LAVE++LG+E+P R R L +E+ R+L+HL+ + + +++
Sbjct: 75 LANRHDWLSAFSNELGVVLAVERMLGMEVPTRAVWTRTLLAELNRVLNHLMFLGSYPLEL 134
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP + F ERE L E SG RMH + R GG+ +D+P + S
Sbjct: 135 GGITPVFYAFREREVLQNVMEEVSGGRMHYMFNRVGGLKEDLPAGWSTRARAAVSAVRSR 194
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE- 242
++ DL+ GN IF+ R ++G + E +G SG + R SG +DLR+ +PY Y E
Sbjct: 195 MDRFDDLVLGNEIFRGRTRDVGVLAPETVHAYGVSGPVARASGVDFDLRRDEPYLAYGEL 254
Query: 243 -LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ GDC R+ V + + ++ + C++RL GP++ PK++
Sbjct: 255 QDTLKVVTRDEGDCLARFEVLLEQTHNALDLADACLDRLAELEP-GPINQRLPKVL---- 309
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
P G YA E P G G YL+S G PYR K+R+
Sbjct: 310 ---------------------KAPEGHTYAWTENPLGINGYYLVSKGEKTPYRLKLRSAS 348
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
Y ++QA+ L G +AD+ AILGSL V G++D
Sbjct: 349 YNNIQALVELLPGTLVADMVAILGSLFFVVGDID 382
>gi|225849708|ref|YP_002729942.1| NADH-quinone oxidoreductase subunit c/d (nadhdehydrogenase i
subunit c/d) (ndh-1 subunit c/d) [Persephonella marina
EX-H1]
gi|225644868|gb|ACO03054.1| NADH-quinone oxidoreductase subunit c/d (nadhdehydrogenase i
subunit c/d) (ndh-1 subunit c/d) [Persephonella marina
EX-H1]
Length = 577
Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats.
Identities = 163/396 (41%), Positives = 240/396 (60%), Gaps = 18/396 (4%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+KS +N+GP HP HG + + +++GE V++ D IG LHRG EKL E Q +P
Sbjct: 197 EKSSQVVLNWGPLHPGTHGTIWFLFDMEGEYVKKCDIIIGQLHRGIEKLAENLNVQQIIP 256
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
Y DR+DY+A +N+ H+ +A EKLLGI +IP + + IR + +E+ RI SHLL + T A+
Sbjct: 257 YTDRMDYIASINENHSVCVAAEKLLGIHEKIPEKAKYIRTMMAELSRINSHLLWLGTYAL 316
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D+GALT L+ F EREK+M +E SG+R YFR GGV+ D+P ++ I + FP
Sbjct: 317 DLGALTMFLYTFREREKIMDIFEGISGARFTINYFRVGGVYADLPYGALDAIEHFLKDFP 376
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+ L D LLT NRI+ +RNV++ + ED + +G +G + R SG +DLRK Y+ Y
Sbjct: 377 TRLADYERLLTRNRIWLKRNVDVCIITEEDVYDYGLTGAVARASGVPYDLRKIDKYDAYG 436
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
E+DFD+P+G+ GD YDRYLVR+ E+R+SV+II QC+ +L +S +DP P+
Sbjct: 437 EVDFDVPVGEKGDSYDRYLVRIEEIRQSVRIINQCIEKLRK------MSKNDPFFYEPED 490
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVY-LISDGGNKPYRCKIRAP 360
MK +++ G + GEVYA + P+GE GVY + G KP+R ++R+
Sbjct: 491 KKMKITIDGR---------GTKLKKGEVYAGTDNPRGELGVYIYMPKDGIKPHRFRLRSG 541
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +LQ G +AD +L ++D V GE DR
Sbjct: 542 AFYNLQIFTKAIIGRPIADAITLLSTIDPVVGETDR 577
>gi|328883289|emb|CCA56528.1| NADH-ubiquinone oxidoreductase chain D [Streptomyces venezuelae
ATCC 10712]
Length = 380
Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats.
Identities = 132/394 (33%), Positives = 206/394 (52%), Gaps = 28/394 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+S +N GPQHP+ HGVLRL L LDGE+V++ +P IG +HRG EKL E + + Q +
Sbjct: 12 AESTDMVLNIGPQHPSTHGVLRLRLVLDGEVVQQAEPVIGYMHRGAEKLFEARDYRQIIM 71
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+R D+++ + E +AVE++LG+E+P R R L +E+ R+L+HL+ + + +++
Sbjct: 72 LANRHDWLSAFSNELGVVMAVERMLGMEVPERAVWTRTLLAELNRVLNHLMFLGSYPLEL 131
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP F ERE+L E SG RMH + R GG+ +D+P + S
Sbjct: 132 GGITPVFHAFREREELQAVMEEVSGGRMHYMFNRVGGLKEDLPAGWLGRARQAVADVRSR 191
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE- 242
++ L+ GN IF+ R +G + E +G SG + R SG +DLR+ +PY Y E
Sbjct: 192 MDVYDRLVLGNEIFRGRTRGVGVLSPEAVHAYGVSGPIARASGVDFDLRRDEPYLAYGEL 251
Query: 243 -LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ + GDC R+ + + S+ + C++R+ GP++ PK++
Sbjct: 252 QETLRVAVRSEGDCLARFECLLDQTHNSLDLADACLDRMAELAP-GPINQRLPKVL---- 306
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
P G YA E P G G YL+S G PYR K+R+
Sbjct: 307 ---------------------KAPEGHTYAWTENPLGVNGYYLVSKGEKTPYRLKLRSAS 345
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ ++QA+ L G +AD+ AILGSL V G++D
Sbjct: 346 FNNIQALVELLPGTLVADMVAILGSLFFVVGDID 379
>gi|323698261|ref|ZP_08110173.1| NADH dehydrogenase (quinone) [Desulfovibrio sp. ND132]
gi|323458193|gb|EGB14058.1| NADH dehydrogenase (quinone) [Desulfovibrio desulfuricans ND132]
Length = 390
Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats.
Identities = 152/393 (38%), Positives = 222/393 (56%), Gaps = 25/393 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K+ + IN GPQHP+ HGVLR+++E+DGE + R +P +G LHR EK+ ET+ + +P
Sbjct: 23 KQDGTLIINMGPQHPSTHGVLRVMIEVDGEYIVRAEPVLGYLHRMHEKMGETQMWGGFIP 82
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
R+DY M AY AVEKL+GIE+P R + +RV+ +E+ R+ SHLL +D+
Sbjct: 83 NMGRVDYGHAMAWNWAYVGAVEKLMGIEVPERAEYLRVIMTELNRLASHLLWWGAYILDL 142
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP L+ FE+RE L+ +R SGSR+ + FR GG+ D+ + VE I + F
Sbjct: 143 GAFTPILYAFEDREMLLDILQRPSGSRLTYSNFRVGGMQMDMDDKCVELIKAFIPHFRKR 202
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L DL+TGN I ++R IG + + +G +G ++RG+G +D+R+++PY Y
Sbjct: 203 LPMYHDLVTGNIILRRRIEGIGIIDQDMCRRYGCTGPVLRGAGVPYDIRRAEPYGIYDRF 262
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DF+IP RY VR+ EM +S++II Q V +L + G + PK
Sbjct: 263 DFEIPTQDTCCSAGRYHVRLAEMEQSLRIIEQAVEQLP-SAEGGYIMDKAPK-------- 313
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
P GE Y VE +G+ G+Y++SDGG PYR K+RAPG +
Sbjct: 314 ----------------PSMKPPAGEAYFCVEGGRGKIGIYVLSDGGKVPYRVKLRAPGLS 357
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L A G +AD AILGSLD++ E+DR
Sbjct: 358 NLNAFVEAATGTLIADAVAILGSLDLIIPEIDR 390
>gi|222529078|ref|YP_002572960.1| NADH-ubiquinone oxidoreductase chain 49kDa [Caldicellulosiruptor
bescii DSM 6725]
gi|312622666|ref|YP_004024279.1| NADH-ubiquinone oxidoreductase chain 49kda [Caldicellulosiruptor
kronotskyensis 2002]
gi|222455925|gb|ACM60187.1| NADH-ubiquinone oxidoreductase chain 49kDa [Caldicellulosiruptor
bescii DSM 6725]
gi|312203133|gb|ADQ46460.1| NADH-ubiquinone oxidoreductase chain 49kDa [Caldicellulosiruptor
kronotskyensis 2002]
Length = 359
Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats.
Identities = 116/391 (29%), Positives = 182/391 (46%), Gaps = 33/391 (8%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ + FGPQHP L+L L L+ E V P IG +HRG EKL E K Q +
Sbjct: 2 GKRTIVPFGPQHPVLPEPLQLRLVLEDEKVVEAIPAIGYVHRGLEKLAEEKDINQNIYVV 61
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
+R+ + Q AY +E+L+GIE+P R + +RV+++E+ R+ SH L + A G
Sbjct: 62 ERVCGICSFQQALAYCQGIEELMGIEVPDRARYLRVIWAELHRLHSHHLWLGLLADAFGF 121
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ + + RE +M E +GSR+ + GGV +DI + + I L
Sbjct: 122 ESLFMQCWRNRELVMDLMEATAGSRVIISTNIIGGVRRDIDADKQKFILDNLAKLEEELK 181
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
I + K+R V +G + ++A+ G G M R SG + DLR Y Y ELDF
Sbjct: 182 KIEGSFLNDYTVKKRLVGVGVLSKQEAYELGCVGPMARASGISMDLRTLG-YAAYGELDF 240
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ + GDCY R VR+ E +S+ +IRQ ++++ PV
Sbjct: 241 EPVVENDGDCYARLKVRLRECYQSIDLIRQAISKMPEGEISTPVKGF------------- 287
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
P GEV + VE P+GE Y+ ++G R +IR P +A++
Sbjct: 288 -------------------PNGEVISRVEQPRGEDVYYIKANGTKNLERLRIRTPTFANI 328
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A+ + +G ADV ++ ++D +R
Sbjct: 329 PALVKMLQGVDFADVPMLVLTIDPCISCTER 359
>gi|237709341|ref|ZP_04539822.1| NADH dehydrogenase I [Bacteroides sp. 9_1_42FAA]
gi|229456726|gb|EEO62447.1| NADH dehydrogenase I [Bacteroides sp. 9_1_42FAA]
Length = 519
Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats.
Identities = 149/392 (38%), Positives = 214/392 (54%), Gaps = 29/392 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ IN GPQHPA HGVLR + L+GEI++++D H G +HRG EK+ E+ T+ Q +
Sbjct: 157 DEDEYIINIGPQHPATHGVLRFRVSLEGEIIKKLDVHCGYIHRGIEKMCESLTYPQTLAL 216
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDY+ HA + +E+ +G+E+ R Q IR + E+ RI SHLL + MD+G
Sbjct: 217 TDRLDYLGAHQNRHALCMCIEQAMGVEVSERVQYIRTIMDELQRIDSHLLFFSCLCMDMG 276
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
ALT +GF +REK++ +E +G R+ Y GGV DI P+ V+ + + L
Sbjct: 277 ALTAFFYGFRDREKILDIFEATTGGRLIQNYNTIGGVQADIAPDFVQKVKEFIAYLRPML 336
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ ++ TGN I ++R +G + EDA +G +G R SG A D+RK PY Y ++D
Sbjct: 337 KEYHEVFTGNVIAQERLKGVGVLSREDAISFGATGGTGRASGWACDVRKRHPYAMYGKID 396
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F + GDC+ RY+VRM E+ ES+ II Q ++ + N M
Sbjct: 397 FREIVHTEGDCFARYMVRMEEILESMNIIEQLIDNIPEGNYQ---------------EKM 441
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K VP G YAAVE +GEFGVYL S G PYR K RA G
Sbjct: 442 K--------------PIIRVPEGNYYAAVEGSRGEFGVYLESHGDKFPYRMKFRATGLPL 487
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ AME +C+ ++AD+ AI G++D V ++DR
Sbjct: 488 VSAMETMCRNAKIADLIAIGGTVDYVVPDIDR 519
>gi|304315649|ref|YP_003850794.1| NADH-ubiquinone oxidoreductase chain 49kDa [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302777151|gb|ADL67710.1| NADH-ubiquinone oxidoreductase chain 49kDa [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 360
Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats.
Identities = 124/387 (32%), Positives = 191/387 (49%), Gaps = 32/387 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
TI FGPQHP + L L ++ E V P G +HRG E L + K F Q V +R+
Sbjct: 6 TIPFGPQHPVLPEPIHLKLVVEDEKVVEAYPAFGFVHRGLETLAQKKDFNQMVYVVERVC 65
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ Y A+E+L+GIE+PIR + +R +++E+ RI SHLL + A G
Sbjct: 66 GICSCMHGQDYCQAIEELMGIEVPIRAEYLRTIWAELHRIHSHLLWLGLFADAFGFENLF 125
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ ++ REK+M E SG+R+ + GGV +DI + + I D L DI+D
Sbjct: 126 MQTWKIREKIMDILEATSGNRVIISVNIVGGVRKDISNDQAKWILRELDDVEKQLKDIND 185
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
++ N K+R V IG + E+A+ G +G M +GSG DLR + Y Y LDF+ +
Sbjct: 186 VVMNNYTVKERTVGIGVLTKEEAYELGATGPMAKGSGVDLDLRTTG-YAAYKYLDFEPIV 244
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
K GD Y R LVRM E+ +S+ +IRQ ++++ + PV +
Sbjct: 245 EKSGDSYARNLVRMKEIFQSIDLIRQALSKMPEGDINVPVKGN----------------- 287
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
P GEV + +E +GE Y+ S+G R +IR P +A++ A+
Sbjct: 288 --------------PPAGEVISRLEQSRGEVVYYIKSNGTKFLDRLRIRTPTFANIPALL 333
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVDR 396
+ G QL DV ++ ++D +R
Sbjct: 334 KILPGSQLQDVPVLILTIDPCISCTER 360
>gi|289578799|ref|YP_003477426.1| NADH-ubiquinone oxidoreductase chain 49kDa [Thermoanaerobacter
italicus Ab9]
gi|289528512|gb|ADD02864.1| NADH-ubiquinone oxidoreductase chain 49kDa [Thermoanaerobacter
italicus Ab9]
Length = 360
Score = 336 bits (863), Expect = 2e-90, Method: Composition-based stats.
Identities = 124/391 (31%), Positives = 185/391 (47%), Gaps = 32/391 (8%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
S TI FGPQHP + L L ++ E V P G +HRG E L + K Q V
Sbjct: 2 SDKSTIPFGPQHPVLPEPIHLKLVVEDEKVVEAYPSFGYVHRGLEMLAQKKDVNQMVYVV 61
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
+R+ + AY VE LL IE+P R + +RV+++E+ RI SHLL + A G
Sbjct: 62 ERVCGICSAMHGQAYCQGVESLLNIEVPERAKYLRVIWAELHRIHSHLLWLGLMADAFGF 121
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ + REK+M E SG+R+ + GGV +DI E + I D L
Sbjct: 122 ENLFMLTWRIREKIMDILEATSGNRVIISVNIIGGVRKDIDGEQAKWILKELDKIEKELK 181
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+++ ++ N KQR V IG + +DA+ G +G + +GSG A D+R Y Y +LDF
Sbjct: 182 EVNKVVRNNYTIKQRTVGIGVLTKDDAYILGATGPVAKGSGVAIDMR-MTGYAAYGDLDF 240
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ GD Y R +VRM E+ +S+ ++RQ +N++ V +
Sbjct: 241 EPVTETDGDTYARTIVRMREIFQSIDLVRQAINKMPEGEIAIKVKGN------------- 287
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
+P GEV + VE +GE YL S GG R +IR P +A+L
Sbjct: 288 ------------------LPAGEVISRVEQSRGEVFYYLKSSGGKNLERLRIRTPTFANL 329
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A+ + G LADV ++ ++D +R
Sbjct: 330 AALLKMLPGSSLADVPVLVLTIDPCISCTER 360
>gi|167752197|ref|ZP_02424324.1| hypothetical protein ALIPUT_00439 [Alistipes putredinis DSM 17216]
gi|167660438|gb|EDS04568.1| hypothetical protein ALIPUT_00439 [Alistipes putredinis DSM 17216]
Length = 542
Score = 336 bits (863), Expect = 3e-90, Method: Composition-based stats.
Identities = 150/392 (38%), Positives = 211/392 (53%), Gaps = 29/392 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ + IN GPQHPA HGVLR + L+GEI++++D H G +HRG EKL E+ T+ Q +
Sbjct: 180 EEDEYVINIGPQHPATHGVLRFRVSLEGEIIKKLDVHCGYIHRGIEKLCESLTYPQTLAL 239
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDY+ HA + +EK LG+E+ R Q IR + E+ RI SHLL + MD+G
Sbjct: 240 TDRLDYLGASQNRHALCMCIEKGLGVEVSERVQYIRTIMDELQRIDSHLLFFSCLCMDMG 299
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
ALT +GF +REK++ E+ +G R+ AY GGV DI PE V+ + L
Sbjct: 300 ALTAFFYGFRDREKVLDILEQTTGGRLIQAYNTIGGVQADIHPEFVKKVKELIKYLRPVL 359
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ ++ TGN I +QR G + EDA +G +G R SG A D+RK PY Y ++D
Sbjct: 360 KEYHEIFTGNVIAQQRLKGTGVLTREDAVSFGATGGTGRASGWACDVRKRHPYAMYGKVD 419
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F + GDC+ RY+VRM E+ ES++II Q ++ +
Sbjct: 420 FREVLFTEGDCFARYMVRMEEILESLRIIEQLIDNIPEGEYQ------------------ 461
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
VP G YAAVE +GEFGVYL S G PYR K R+ G
Sbjct: 462 -----------LKMKPVIRVPEGSYYAAVEGSRGEFGVYLESRGDKSPYRLKFRSTGLPL 510
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ M+ + +G ++AD+ AI G+LD V ++DR
Sbjct: 511 VSCMDTITRGAKIADLIAIGGTLDYVVPDIDR 542
>gi|294813232|ref|ZP_06771875.1| NADH dehydrogenase I chain D [Streptomyces clavuligerus ATCC 27064]
gi|326441658|ref|ZP_08216392.1| putative NADH dehydrogenase chain D [Streptomyces clavuligerus ATCC
27064]
gi|294325831|gb|EFG07474.1| NADH dehydrogenase I chain D [Streptomyces clavuligerus ATCC 27064]
Length = 380
Score = 336 bits (863), Expect = 3e-90, Method: Composition-based stats.
Identities = 137/394 (34%), Positives = 207/394 (52%), Gaps = 28/394 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+S +N GPQHP+ HGVLRL L LDGEIV +P +G +HRG EKL E + + Q +
Sbjct: 12 AESTDMVLNIGPQHPSTHGVLRLRLVLDGEIVRSAEPVVGYMHRGAEKLFEARDYRQIIM 71
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+R D+++ + E +AVE++LG+E+P R R L +E+ R+L+HL+ + + +++
Sbjct: 72 LANRHDWLSAFSNELGVVMAVERMLGMEVPERAVWTRTLLAELNRVLNHLMFLGSYPLEL 131
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP F ERE+L E SG RMH + R GG+ +D+P + + S
Sbjct: 132 GGITPVFHAFREREELQNVMEEISGGRMHYMFNRVGGLKEDLPAGWLGRVRHTVAEVRSR 191
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE- 242
++ L+ GN IF+ R +GT+ A +G SG + R SG +DLR+ +PY Y E
Sbjct: 192 MDVYDRLVLGNEIFRGRTRGVGTLSAAAAHAYGVSGPIARASGVDFDLRRDEPYLAYGEL 251
Query: 243 -LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ GDC R+ V + + S+ + C++R+ G GPV+ PK++
Sbjct: 252 TDTLKVVTRAEGDCLARFEVLLDQTHNSLDLADACLDRIAGLAP-GPVNQRLPKVL---- 306
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
P G YA E P G G YL+S G PYR K+R+
Sbjct: 307 ---------------------KAPEGHTYAWTENPLGINGYYLVSKGEKTPYRLKLRSAS 345
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
Y ++QA+ L G +AD+ AILGSL V G++D
Sbjct: 346 YNNIQALTELLPGTLVADMVAILGSLFFVVGDID 379
>gi|333025298|ref|ZP_08453362.1| putative NADH dehydrogenase I [Streptomyces sp. Tu6071]
gi|332745150|gb|EGJ75591.1| putative NADH dehydrogenase I [Streptomyces sp. Tu6071]
Length = 380
Score = 336 bits (863), Expect = 3e-90, Method: Composition-based stats.
Identities = 133/394 (33%), Positives = 206/394 (52%), Gaps = 28/394 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+S +N GPQHP+ HGVLRL L LDGE + +P IG +HRG EKL E + + Q +
Sbjct: 12 AESTDMVLNIGPQHPSTHGVLRLRLVLDGERIVSAEPVIGYMHRGAEKLFEARDYRQIIM 71
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+R D+++ + E +AVE++LG+E+P R +R L +E+ R+L+HL+ + + +++
Sbjct: 72 LANRHDWLSAFSNELGVVMAVERMLGMEVPERAVWLRTLLAELNRVLNHLMFLGSYPLEL 131
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP + F ERE+L E SG RMH + R GG+ +DIP E +
Sbjct: 132 GGITPMFYAFREREELQAVMEEVSGGRMHYMFNRVGGLKEDIPLGWPERVRTALARVRER 191
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ D L+ GN IF+ R ++G + +G SG + R SG +DLR+ +PY Y EL
Sbjct: 192 MPDYDGLILGNEIFRGRTRDVGVLSARTVHAYGVSGPLARASGVDFDLRRDEPYLAYGEL 251
Query: 244 DF--DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ + GDC R+ + + S+ + C++ L + GPV+ PK++
Sbjct: 252 QDVLRVVTREEGDCLARFECLLDQTHNSLDLAEACLDHL-AELPPGPVNQRLPKVL---- 306
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
P G YA E P G G Y++S G PYR K+R+
Sbjct: 307 ---------------------KAPEGHTYAWTENPLGLNGYYMVSKGEKTPYRLKLRSAS 345
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ ++QA+ L G +AD+ AILGSL V G++D
Sbjct: 346 FNNIQALTELLPGTLVADMVAILGSLFFVVGDID 379
>gi|237724575|ref|ZP_04555056.1| NADH-quinone oxidoreductase subunit C/D [Bacteroides sp. D4]
gi|229437134|gb|EEO47211.1| NADH-quinone oxidoreductase subunit C/D [Bacteroides dorei
5_1_36/D4]
Length = 519
Score = 336 bits (863), Expect = 3e-90, Method: Composition-based stats.
Identities = 149/392 (38%), Positives = 214/392 (54%), Gaps = 29/392 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ IN GPQHPA HGVLR + L+GEI++++D H G +HRG EK+ E+ T+ Q +
Sbjct: 157 DEDEYIINIGPQHPATHGVLRFRVSLEGEIIKKLDVHCGYIHRGIEKMCESLTYPQTLAL 216
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDY+ HA + +E+ +G+E+ R Q IR + E+ RI SHLL + MD+G
Sbjct: 217 TDRLDYLGAHQNRHALCMCIEQAMGVEVSERVQYIRTIMDELQRIDSHLLFFSCLCMDMG 276
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
ALT +GF +REK++ +E +G R+ Y GGV DI P+ V+ + + L
Sbjct: 277 ALTAFFYGFRDREKILDIFEATTGGRLIQNYNTIGGVQADIAPDFVQKVKEFIVYLRPML 336
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ ++ TGN I ++R +G + EDA +G +G R SG A D+RK PY Y ++D
Sbjct: 337 KEYHEVFTGNVIAQERLKGVGVLSREDAISFGATGGTGRASGWACDVRKRHPYAMYGKID 396
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F + GDC+ RY+VRM E+ ES+ II Q ++ + N M
Sbjct: 397 FREIVHTEGDCFARYMVRMEEILESMNIIEQLIDNIPEGNYQ---------------EKM 441
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K VP G YAAVE +GEFGVYL S G PYR K RA G
Sbjct: 442 K--------------PIIRVPEGNYYAAVEGSRGEFGVYLESHGDKFPYRMKFRATGLPL 487
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ AME +C+ ++AD+ AI G++D V ++DR
Sbjct: 488 VSAMETMCRNAKIADLIAIGGTVDYVVPDIDR 519
>gi|239904916|ref|YP_002951654.1| Ech hydrogenase subunit EchE [Desulfovibrio magneticus RS-1]
gi|239794779|dbj|BAH73768.1| Ech hydrogenase subunit EchE [Desulfovibrio magneticus RS-1]
Length = 358
Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats.
Identities = 110/389 (28%), Positives = 175/389 (44%), Gaps = 33/389 (8%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
+ FGPQHP L L L ++ EIV P +G +HRG EKL E + F Q + +R
Sbjct: 3 RTILPFGPQHPVLPEPLHLKLTIEDEIVVEALPTLGYVHRGLEKLCEVRDFNQMIQIVER 62
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ + Y VE+++G+E+P R + +R ++ E+ R+ SHLL + A G +
Sbjct: 63 VCGICSCLHALCYCEGVEQIMGVEVPRRAKYLRTIWGELHRVHSHLLWLGLFADAFGFES 122
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
+ + RE++M E G+R+ + GGV +D+ PE + I + +
Sbjct: 123 LFMQFWRVRERIMDIMEATCGNRVVVSVNVIGGVRRDLTPEQCKWIEEQVAIAEKEIRQL 182
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ + + K+R G + + A+ G G M+RGSG A D R++ Y + EL F+
Sbjct: 183 TSTILNDYTVKKRCCGKGVLSKDQAYQLGAVGPMLRGSGWAQDARQTG-YAAFGELGFEP 241
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
+ GDCY R VR E +S+ ++R + RL V
Sbjct: 242 IVEFDGDCYARSAVRFRETLQSLDLVRLAIARLPEGEIAAKVKGK--------------- 286
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
P GE VE P+GE YL +DG R +IR P +A++
Sbjct: 287 -----------------PQGETVTRVEQPRGELLYYLKADGSKHMDRVRIRTPTFANIPP 329
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + G +LADV I+ S+D +R
Sbjct: 330 LLAMLPGCELADVPVIVLSIDPCISCTER 358
>gi|312127860|ref|YP_003992734.1| NADH-ubiquinone oxidoreductase chain 49kda [Caldicellulosiruptor
hydrothermalis 108]
gi|311777879|gb|ADQ07365.1| NADH-ubiquinone oxidoreductase chain 49kDa [Caldicellulosiruptor
hydrothermalis 108]
Length = 359
Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats.
Identities = 116/391 (29%), Positives = 181/391 (46%), Gaps = 33/391 (8%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ + FGPQHP L+L L L+ E V P IG +HRG EKL E K Q +
Sbjct: 2 GKRTIVPFGPQHPVLPEPLQLRLVLEDEKVVEAIPAIGYVHRGLEKLAEEKDINQNIYVV 61
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
+R+ + Q AY +E+L+GIE+P R + +RV+++E+ R+ SH L + A G
Sbjct: 62 ERVCGICSFQQALAYCQGIEELMGIEVPDRAKYLRVIWAELHRLHSHHLWLGLLADAFGF 121
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ + + RE +M E +GSR+ + GGV +DI + + I L
Sbjct: 122 ESLFMQCWRNRELVMDLMEATAGSRVIISTNIIGGVRRDIDADKQKFILDNLAKLEEELK 181
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
I + K+R V +G + ++A+ G G M R SG + DLR Y Y ELDF
Sbjct: 182 KIEGSFLNDYTVKKRLVGVGVLSKQEAYELGCVGPMARASGISMDLRTLG-YAAYGELDF 240
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ + GDCY R VR+ E +S+ +IRQ + ++ PV
Sbjct: 241 EPVVENDGDCYARLKVRLRECYQSIDLIRQAIFKMPEGEISTPVKGF------------- 287
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
P GEV + VE P+GE Y+ ++G R +IR P +A++
Sbjct: 288 -------------------PNGEVISRVEQPRGEDVYYIKANGTKNLERLRIRTPTFANI 328
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A+ + +G ADV ++ ++D +R
Sbjct: 329 PALVKMLQGVDFADVPMLVLTIDPCISCTER 359
>gi|182437895|ref|YP_001825614.1| putative NADH dehydrogenase chain D [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|218534374|sp|B1VSH7|NUOD2_STRGG RecName: Full=NADH-quinone oxidoreductase subunit D 2; AltName:
Full=NADH dehydrogenase I subunit D 2; AltName:
Full=NDH-1 subunit D 2
gi|178466411|dbj|BAG20931.1| putative NADH dehydrogenase chain D [Streptomyces griseus subsp.
griseus NBRC 13350]
Length = 394
Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats.
Identities = 131/394 (33%), Positives = 205/394 (52%), Gaps = 28/394 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+S +N GPQHP+ HGVLRL + LDGE V+ +P IG +HRG EKL E + + Q +
Sbjct: 26 AESTDMVLNIGPQHPSTHGVLRLRIVLDGERVQHAEPVIGYMHRGAEKLFEARDYRQIIM 85
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+R D+++ + E +AVE++LG+E+P R R L +E+ R+L+HL+ + + +++
Sbjct: 86 LANRHDWLSAFSNELGVVMAVERMLGMEVPERAVWTRTLLAELNRVLNHLMFLGSYPLEL 145
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP F ERE+L E SG RMH + R GG+ +D+P + S S
Sbjct: 146 GGITPVFHAFREREELQAVMEEVSGGRMHYMFNRVGGLKEDVPAGWAGRVRDAVASVRSR 205
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE- 242
++ +L+ GN IF+ R ++G + +G SG + R SG +DLR+ +PY Y E
Sbjct: 206 MDVYENLVLGNEIFRGRTRDVGVLSAAAVHAYGVSGPIARASGVDFDLRRDEPYLAYGEL 265
Query: 243 -LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ GDC R+ + + S+ + C++R+ GP++ PK++
Sbjct: 266 RDTLKVVTRTEGDCLARFECLLEQTLNSLDLADACLDRMAHLAP-GPINQRLPKVL---- 320
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
P G YA E P G G YL+S G PYR K+R+
Sbjct: 321 ---------------------KAPEGHTYAWTENPLGVNGYYLVSKGEKTPYRLKLRSAS 359
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ ++QA+ L G +AD+ AILGSL V G++D
Sbjct: 360 FNNIQALTELLPGTLVADMVAILGSLFFVVGDID 393
>gi|329939462|ref|ZP_08288798.1| NADH dehydrogenase subunit NuoD2 [Streptomyces griseoaurantiacus
M045]
gi|329301691|gb|EGG45585.1| NADH dehydrogenase subunit NuoD2 [Streptomyces griseoaurantiacus
M045]
Length = 394
Score = 336 bits (862), Expect = 4e-90, Method: Composition-based stats.
Identities = 133/394 (33%), Positives = 206/394 (52%), Gaps = 28/394 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+S +N GPQHP+ HGVLRL L LDGE + +P IG +HRG EKL E + + Q +
Sbjct: 26 AESTDMVLNIGPQHPSTHGVLRLRLVLDGERIVTAEPVIGYMHRGAEKLFEARDYRQIIV 85
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+R D+++ E LAVE++LG+E+P R +R L +E+ R+L+HL+ + + +++
Sbjct: 86 LANRHDWLSAFANELGVVLAVERMLGMEVPARAVWLRTLLAELNRVLNHLMFLGSYPLEL 145
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP + F ERE++ E SG R+H + R GG+ +D+P S S
Sbjct: 146 GGITPMFYAFREREEIQHVMEEVSGGRLHYMFNRVGGLKEDLPAGWTGRARAAVASVRSR 205
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
++ DL+ GN IF+ R +G + +G SG + R SG +DLR+ +PY Y EL
Sbjct: 206 MDVYDDLVLGNEIFRGRTRGVGVLAPGAVHAYGVSGPIARASGVDFDLRRDEPYLAYGEL 265
Query: 244 DF--DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ + GDC R+ + + ++ + C++RL + GPV+ PK++
Sbjct: 266 QDVLKVVTREEGDCLARFECLLEQTHNALDLADACLDRL-AELPPGPVNQRLPKVL---- 320
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
P G YA E P G G YL+S G PYR K+R+
Sbjct: 321 ---------------------KAPEGHTYAWTENPLGINGYYLVSKGDKTPYRLKLRSAS 359
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
Y ++QA+ L G +AD+ AILGS+ V G++D
Sbjct: 360 YNNIQALTELLPGTLVADMVAILGSMFFVVGDID 393
>gi|255961349|ref|YP_003097531.1| NADH dehydrogenase subunit 7 [Selaginella moellendorffii]
gi|302824517|ref|XP_002993901.1| hypothetical protein SELMODRAFT_137890 [Selaginella moellendorffii]
gi|254941521|gb|ACT89036.1| NADH dehydrogenase subunit 7 [Selaginella moellendorffii]
gi|296399272|gb|ADH10447.1| NADH-plastoquinone oxidoreductase subunit 7 [Selaginella
moellendorffii]
gi|300138268|gb|EFJ05042.1| hypothetical protein SELMODRAFT_137890 [Selaginella moellendorffii]
Length = 393
Score = 336 bits (862), Expect = 4e-90, Method: Composition-based stats.
Identities = 150/397 (37%), Positives = 201/397 (50%), Gaps = 7/397 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M ++ + ++ GP HP+ HGV RLI DGE V +P G LHRG EK+ E +T +Q
Sbjct: 3 MPTERGNTTVVSMGPHHPSMHGVPRLIATSDGEDVIDREPVSGYLHRGMEKIAENRTIVQ 62
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
PY R DY+A M E A E+ + I+ P R R++ E+ RI SHLL +
Sbjct: 63 YPPYVTRWDYLATMPTEAVTVNAPERSIDIQAPKRASHTRIIMPELSRIASHLLWLGPFM 122
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+GA TP ERE + E A+G RM + R GGV D+P V+ D F
Sbjct: 123 ADIGAQTPFSRISREREMVYDPSEAATGMRMTHNHSRAGGVAVDLPYGWVDKCLDLRDYF 182
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+++ L+T N I +R +G E+A WG SG M+R SG WDLRK YEC+
Sbjct: 183 LPRVDEHERLITRNPILSKRVEGVGIASREEAINWGSSGPMLRASGVRWDLRKVDHYECH 242
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
ELD K GD R+LVR+ EM ESV I +Q + G + + PK
Sbjct: 243 DELDRRGAWQKEGDSLARHLVRIGEMIESVGITQQASRLIPGGP------YENLEARRPK 296
Query: 301 RADMKRSME-SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
M+ K + P E Y VEAPKGE G+ L+ D P+R KIR
Sbjct: 297 MNSMEDWNNFEYRFISKKPSPTPRSPKREHYVRVEAPKGELGISLMGDDSISPWRWKIRP 356
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
P + Q + L +G +LAD+ ILGS+DI+ GE DR
Sbjct: 357 PCSINPQILPQLVEGMKLADIMTILGSIDIIMGEADR 393
>gi|251792879|ref|YP_003007605.1| hydrogenase-4 subunit G [Aggregatibacter aphrophilus NJ8700]
gi|247534272|gb|ACS97518.1| hydrogenase-4 component G [Aggregatibacter aphrophilus NJ8700]
Length = 576
Score = 336 bits (862), Expect = 4e-90, Method: Composition-based stats.
Identities = 111/395 (28%), Positives = 176/395 (44%), Gaps = 34/395 (8%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETK-TFLQAV 62
+K + + GP H + L +DGE + D + +HRG EKL ET+ + Q
Sbjct: 182 EKGEARIVPIGPLHITSDEPGHFRLFVDGEDIIDADYRLFYVHRGMEKLAETRMDYDQVN 241
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
DR+ + AYA +VE LGI+IP R Q IR + E+ R+ SHLLN+ +
Sbjct: 242 FLADRVCGICGFTHSVAYANSVESALGIQIPQRAQWIRAILLEVERLHSHLLNLGLSSHF 301
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
G T + F REK M E +G+R GGV +D+ E
Sbjct: 302 TGFDTGFMQFFRVREKSMTLAEVLTGARKTYGINLIGGVRRDMLKHQREQCIKLIGEMRE 361
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ +SD+L +QR V +G + + A + G M+RGSG A D+RK P+ Y +
Sbjct: 362 EIKTLSDILLNTPNMEQRTVGVGILAKDIARDFSPVGPMVRGSGFARDVRKVHPFSGYGD 421
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+ F++ +GD R VR+ E+ ES+ I ++ ++ GP+
Sbjct: 422 VPFNMFTEANGDVLSRVKVRINEVFESMNI----IDYMVDNLPGGPILK----------- 466
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGE-VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
EG++ G EAP+GE + + K +R + RA
Sbjct: 467 -----------------EGFNYTPGRFALGITEAPRGEDIHWSMLGDNQKLFRWRCRAAT 509
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 510 YANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 544
>gi|318061582|ref|ZP_07980303.1| putative NADH dehydrogenase chain D [Streptomyces sp. SA3_actG]
gi|318081380|ref|ZP_07988712.1| putative NADH dehydrogenase chain D [Streptomyces sp. SA3_actF]
Length = 380
Score = 336 bits (862), Expect = 4e-90, Method: Composition-based stats.
Identities = 134/394 (34%), Positives = 205/394 (52%), Gaps = 28/394 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+S +N GPQHP+ HGVLRL L LDGE + +P IG +HRG EKL E + + Q +
Sbjct: 12 AESTDMVLNIGPQHPSTHGVLRLRLVLDGERIVSAEPVIGYMHRGAEKLFEARDYRQIIM 71
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+R D+++ + E +AVE++LG+E+P R +R L +E+ R+L+HL+ + + +++
Sbjct: 72 LANRHDWLSAFSNELGVVMAVERMLGMEVPERAVWLRTLLAELNRVLNHLMFLGSYPLEL 131
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP + F ERE+L E SG RMH + R GG+ +DIP E +
Sbjct: 132 GGITPMFYAFREREELQAVMEEVSGGRMHYMFNRVGGLKEDIPLGWPERVRTALARVRER 191
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ D L+ GN IF+ R ++G + +G SG + R SG +DLR+ +PY Y EL
Sbjct: 192 MPDYDGLILGNEIFRGRTRDVGVLSARAVHAYGVSGPIARASGVDFDLRRDEPYLAYGEL 251
Query: 244 DF--DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ + GDC R+ + + S+ + C+ L + GPV+ PK++
Sbjct: 252 QDVLRVVTREEGDCLARFECLLDQTHNSLDLAEACL-GHLAELPPGPVNQRLPKVL---- 306
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
P G YA E P G G YL+S G PYR K+R+
Sbjct: 307 ---------------------KAPEGHTYAWTENPLGLNGYYLVSKGEKTPYRLKLRSAS 345
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ ++QA+ L G +AD+ AILGSL V G++D
Sbjct: 346 FNNIQALTELLPGTLVADMVAILGSLFFVVGDID 379
>gi|294496246|ref|YP_003542739.1| NADH dehydrogenase (quinone) [Methanohalophilus mahii DSM 5219]
gi|292667245|gb|ADE37094.1| NADH dehydrogenase (quinone) [Methanohalophilus mahii DSM 5219]
Length = 374
Score = 336 bits (862), Expect = 4e-90, Method: Composition-based stats.
Identities = 139/390 (35%), Positives = 203/390 (52%), Gaps = 23/390 (5%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
I+ GPQH A G RL +++ GE V+ + IG +H+G EK++E KT+LQ +P D
Sbjct: 8 DEMLIHLGPQHVAQPGPFRLNVKVKGETVQDSEVEIGFIHKGIEKILENKTYLQGIPVVD 67
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R Y+A + E A+ VEKL G+E R Q IRV+ E+ RI SHLL A +G +
Sbjct: 68 RACYLAALTNEEAFVGCVEKLAGVEPTERSQYIRVIVEELSRIQSHLLGYAEYASFLGFV 127
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
+ ++ REK++ E +G+R+ +Y R GGV D+P D + +
Sbjct: 128 SMFMYPIAVREKVLELLEMTTGARITHSYLRFGGVRDDLPEGFEAKCKETFDYVRKGVEE 187
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+L+ + I+++R V +G + + A G SG +R +G A+D+RK PY Y +LDF
Sbjct: 188 WGELMKTDMIYRERAVGVGVLTPDIASDLGVSGPPLRATGVAFDIRKDDPYLVYDDLDFK 247
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ GD R VR+ E+ ES+ I+ Q ++++ D +
Sbjct: 248 VCTETAGDIDARIWVRIAEIYESMYIVEQALDQMPSGPLFPENLPYDRR----------- 296
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+ VP GEV+ VE P+GE G Y+ISDG +KPYR KIR P Y +Q
Sbjct: 297 ------------SPVMRVPKGEVFYRVEDPRGEMGFYMISDGSDKPYRVKIRGPVYPTMQ 344
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A+ L KG QLADV AI GS+D E DR
Sbjct: 345 ALPPLIKGTQLADVVAIAGSMDACTSEADR 374
>gi|297545020|ref|YP_003677322.1| NADH-ubiquinone oxidoreductase chain 49kDa [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|296842795|gb|ADH61311.1| NADH-ubiquinone oxidoreductase chain 49kDa [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
Length = 360
Score = 336 bits (861), Expect = 4e-90, Method: Composition-based stats.
Identities = 124/391 (31%), Positives = 185/391 (47%), Gaps = 32/391 (8%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
S TI FGPQHP + L L ++ E V P G +HRG E L + K Q V
Sbjct: 2 SDKSTIPFGPQHPVLPEPIHLKLVVEDEKVVEAYPSFGYVHRGLEMLAQKKDVNQMVYVV 61
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
+R+ + AY VE LL IE+P R + +RV+++E+ RI SHLL + A G
Sbjct: 62 ERVCGICSAMHGQAYCQGVESLLNIEVPERAKYLRVIWAELHRIHSHLLWLGLMADAFGF 121
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ + REK+M E SG+R+ + GGV +DI E + I D L
Sbjct: 122 ENLFMLTWRIREKIMDILEATSGNRVIISVNIIGGVRKDIDGEQAKWILKELDKIEEELK 181
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+++ ++ N KQR V IG + +DA+ G +G + +GSG A D+R Y Y +LDF
Sbjct: 182 EVNKVVRNNYTIKQRTVGIGVLTKDDAYILGATGPVAKGSGVAIDMR-MTGYAAYGDLDF 240
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ GD Y R +VRM E+ +S+ ++RQ +N++ V +
Sbjct: 241 EPVTETDGDTYARTIVRMREIFQSIDLVRQAINKMPEGEIAIKVKGN------------- 287
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
+P GEV + VE +GE YL S GG R +IR P +A+L
Sbjct: 288 ------------------LPAGEVISRVEQSRGEVFYYLKSSGGKNLERLRIRTPTFANL 329
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A+ + G LADV ++ ++D +R
Sbjct: 330 AALLKMLPGSSLADVPVLVLTIDPCISCTER 360
>gi|326778531|ref|ZP_08237796.1| NADH dehydrogenase (quinone) [Streptomyces cf. griseus XylebKG-1]
gi|326658864|gb|EGE43710.1| NADH dehydrogenase (quinone) [Streptomyces cf. griseus XylebKG-1]
Length = 380
Score = 336 bits (861), Expect = 4e-90, Method: Composition-based stats.
Identities = 131/394 (33%), Positives = 205/394 (52%), Gaps = 28/394 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+S +N GPQHP+ HGVLRL + LDGE V+ +P IG +HRG EKL E + + Q +
Sbjct: 12 AESTDMVLNIGPQHPSTHGVLRLRIVLDGERVQHAEPVIGYMHRGAEKLFEARDYRQIIM 71
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+R D+++ + E +AVE++LG+E+P R R L +E+ R+L+HL+ + + +++
Sbjct: 72 LANRHDWLSAFSNELGVVMAVERMLGMEVPERAVWTRTLLAELNRVLNHLMFLGSYPLEL 131
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP F ERE+L E SG RMH + R GG+ +D+P + S S
Sbjct: 132 GGITPVFHAFREREELQAVMEEVSGGRMHYMFNRVGGLKEDVPAGWAGRVRDAVASVRSR 191
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE- 242
++ +L+ GN IF+ R ++G + +G SG + R SG +DLR+ +PY Y E
Sbjct: 192 MDVYENLVLGNEIFRGRTRDVGVLSAAAVHAYGVSGPIARASGVDFDLRRDEPYLAYGEL 251
Query: 243 -LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ GDC R+ + + S+ + C++R+ GP++ PK++
Sbjct: 252 RDTLKVVTRTEGDCLARFECLLEQTLNSLDLADACLDRMAHLAP-GPINQRLPKVL---- 306
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
P G YA E P G G YL+S G PYR K+R+
Sbjct: 307 ---------------------KAPEGHTYAWTENPLGVNGYYLVSKGEKTPYRLKLRSAS 345
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ ++QA+ L G +AD+ AILGSL V G++D
Sbjct: 346 FNNIQALTELLPGTLVADMVAILGSLFFVVGDID 379
>gi|91773270|ref|YP_565962.1| F420H2 dehydrogenase subunit D [Methanococcoides burtonii DSM 6242]
gi|91712285|gb|ABE52212.1| F420H2 dehydrogenase subunit D [Methanococcoides burtonii DSM 6242]
Length = 374
Score = 336 bits (861), Expect = 5e-90, Method: Composition-based stats.
Identities = 140/397 (35%), Positives = 207/397 (52%), Gaps = 24/397 (6%)
Query: 1 MDKK-KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFL 59
MD+ ++ GPQHP G RL L+L GE V D +G +H+G EK++E KT+L
Sbjct: 1 MDETVGPSEMIVHLGPQHPMQPGPFRLNLKLKGETVVDGDIELGFIHKGIEKILENKTYL 60
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
Q +P DR+ Y+ M E AY AVEKL IE+P + Q IRV+ E+ R+ SHLL +
Sbjct: 61 QGIPIVDRICYLTAMTNEEAYVGAVEKLADIEVPEKSQYIRVIVEELSRLQSHLLGMGEF 120
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
+G ++ ++ +ERE ++ + +G+R+ + R GGV D+P E S
Sbjct: 121 GEFIGFVSMFMYTIKEREDILSLMDMVTGARITHTFLRFGGVRDDLPEGFKEKSVAVFAS 180
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ D L + I+K R +G + + A G SG +R +G +D+RK +PY
Sbjct: 181 LREQIADYDKLFNHDEIYKLRCFGVGVLDSKTARDLGVSGPALRATGVPFDIRKDEPYLV 240
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y +LDF + GD R VR+ EM E++ II QC++++ GP+ D
Sbjct: 241 YKDLDFKVCTATDGDIAARINVRLEEMLEAMYIIEQCLDQM----PSGPIFFEDSLYGVR 296
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
T VP G+++ VE P+GE G Y++SDG +KP+R KIR
Sbjct: 297 -------------------TPVMRVPEGDIFHRVEDPRGEMGFYVVSDGSDKPHRVKIRG 337
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
P Y +QA+ L KG +ADV+AI GS+D E DR
Sbjct: 338 PVYPTMQALPPLIKGTTIADVAAIAGSMDGCTSEADR 374
>gi|326202293|ref|ZP_08192162.1| NADH-ubiquinone oxidoreductase chain 49kDa [Clostridium
papyrosolvens DSM 2782]
gi|325987411|gb|EGD48238.1| NADH-ubiquinone oxidoreductase chain 49kDa [Clostridium
papyrosolvens DSM 2782]
Length = 359
Score = 336 bits (861), Expect = 5e-90, Method: Composition-based stats.
Identities = 113/389 (29%), Positives = 180/389 (46%), Gaps = 32/389 (8%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
S + FGPQHP L + L ++ E + P IG +HRG EKL ETK F Q +R
Sbjct: 3 STIVPFGPQHPVLPEPLHIKLVMEDENIVDAIPAIGYVHRGLEKLTETKEFTQNTFVVER 62
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ + + AY +E+L+ IEI R + +RV+++E+ R+ SHLL + A G +
Sbjct: 63 VCGICSVMHAMAYCQGIEELMNIEISDRAKFLRVIWAELHRMHSHLLWLGLLADAFGFES 122
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
+ + +REK+M E +GSR+ + GG +D+ E + I D L +
Sbjct: 123 LFMQAWRDREKVMDIMEETAGSRVVISCNTIGGTRRDLNKEQMAKIVATVDDIKYDLEQL 182
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ N K R V +G + DA + G M R SG D+R + Y Y +LDF+
Sbjct: 183 EAVFLSNYTVKHRLVGVGVLTKADAIEYCTVGPMARASGIVTDMRTTG-YSAYGQLDFEP 241
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
GDCY R VR+ E+ +S+ +I+Q + ++ V P
Sbjct: 242 ITHNDGDCYARTYVRLKEVYQSIDLIKQAIAKIPEGEHVVPFKGF--------------- 286
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
P G+V + VE P+GE YL +G R ++R P +A++ +
Sbjct: 287 ----------------PPKGDVISRVEQPRGEVLYYLRGNGTKTLDRLRLRTPTFANIPS 330
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + G QLADV ++ ++D +R
Sbjct: 331 LLKMLPGSQLADVPMLILTIDPCISCTER 359
>gi|325578547|ref|ZP_08148647.1| hydrogenase-4 component G [Haemophilus parainfluenzae ATCC 33392]
gi|325159783|gb|EGC71913.1| hydrogenase-4 component G [Haemophilus parainfluenzae ATCC 33392]
Length = 576
Score = 335 bits (860), Expect = 5e-90, Method: Composition-based stats.
Identities = 116/394 (29%), Positives = 175/394 (44%), Gaps = 32/394 (8%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETK-TFLQAV 62
+K + + GP H + L +DGE + D + +HRG EKL ET+ + Q
Sbjct: 182 EKGEARIVPLGPLHITSDEPGHFRLFVDGEDIIDADYRLFYVHRGMEKLAETRMDYDQVN 241
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
DR+ + AYA +VE LGI+IP R + IR + E+ R+ SHLLN+ +
Sbjct: 242 FLADRVCGICGFTHSVAYANSVESALGIKIPKRAEWIRAILLEVERLHSHLLNLGLSSHF 301
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
G T + F REK M E +G+R GGV +D+ E
Sbjct: 302 TGFDTGFMQFFRVREKSMTLAEVLTGARKTYGINLIGGVRRDMLKHQREQCIKLIGEMRE 361
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L ++D+L +QR V +G + + A + G MIRGSG A D+RK P+ Y +
Sbjct: 362 ELKTLTDILLNTPNMEQRTVGVGVLAKDIARDFSPVGPMIRGSGFARDVRKVHPFSGYGD 421
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+ F++ +GD R VR+ E+ ES+ II V+ L
Sbjct: 422 IPFNLFTEANGDVLSRVKVRINEVFESMNIIDYMVDNLP--------------------- 460
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
S E L F YT G EAP+GE + + K +R + RA Y
Sbjct: 461 ----SGEILKEGF-NYTPGRF-----ALGITEAPRGEDIHWSMLGDNQKLFRWRCRAATY 510
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 511 ANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 544
>gi|261868403|ref|YP_003256325.1| hydrogenase-4 subunit G [Aggregatibacter actinomycetemcomitans
D11S-1]
gi|261413735|gb|ACX83106.1| hydrogenase-4 component G [Aggregatibacter actinomycetemcomitans
D11S-1]
Length = 576
Score = 335 bits (860), Expect = 5e-90, Method: Composition-based stats.
Identities = 116/394 (29%), Positives = 177/394 (44%), Gaps = 32/394 (8%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETK-TFLQAV 62
+K + + GP H + L +DGE + D + +HRG EKL ET+ + Q
Sbjct: 182 EKGEARIVPIGPLHITSDEPGHFRLFVDGEDIIDADYRLFYVHRGMEKLAETRMDYDQVN 241
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
DR+ + AYA +VE LGI+IP R Q IR + E+ R+ SHLLN+ +
Sbjct: 242 FLADRVCGICGFTHSVAYANSVESALGIQIPKRAQWIRAILLEVERLHSHLLNLGLSSHF 301
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
G T + F REK M E +G+R GGV +D+ E +
Sbjct: 302 TGFDTGFMQFFRVREKSMTLAEVLTGARKTYGINLIGGVRRDMLKHQREQCIKLIAEMRA 361
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ +S++L +QR V +G + + A + G MIRGSG A D+RK P+ Y +
Sbjct: 362 EIKTLSEILLSTPNMEQRTVGVGILAKDIARDFSPVGPMIRGSGFARDVRKVHPFSGYGD 421
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+ F++ ++GD R VR+ E+ ES+ II V+ L
Sbjct: 422 VPFELFTEQNGDVLSRVKVRINEVFESMNIIDYMVDNLP--------------------- 460
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
S E L F YT G EAP+GE + + K +R + RA Y
Sbjct: 461 ----SGEILKEGF-NYTPGRF-----ALGITEAPRGEDIHWSMLGDNQKLFRWRCRAATY 510
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 511 ANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 544
>gi|255037482|ref|YP_003088103.1| NADH dehydrogenase (quinone) [Dyadobacter fermentans DSM 18053]
gi|254950238|gb|ACT94938.1| NADH dehydrogenase (quinone) [Dyadobacter fermentans DSM 18053]
Length = 405
Score = 335 bits (860), Expect = 5e-90, Method: Composition-based stats.
Identities = 166/403 (41%), Positives = 229/403 (56%), Gaps = 30/403 (7%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ ++ +N GPQHP+ HGVLRL + DGE+V V PH+G LHR EK E+ F Q
Sbjct: 25 ESLRTEEMVLNMGPQHPSTHGVLRLEVVTDGEVVIDVVPHLGYLHRCFEKHAESLPFNQI 84
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+PY DR+DYVA MN EHAY + VE++LGIE IP R + IRV+ +E+ R+ SH + + T
Sbjct: 85 IPYVDRMDYVAAMNSEHAYVMGVERMLGIENDIPKRVEYIRVVVAELNRLASHFVALGTY 144
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
AMD+GA TP LW +RE+++ E G+RM Y GG+ D+P E +
Sbjct: 145 AMDIGAYTPFLWMMRDREQILRLLEWTCGARMLYNYIWIGGLFYDLPVGFEERCAEFIKY 204
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
L ++ L+ N+IF QR N+G + L+ A +G +G M+RGSG +DLRK Y
Sbjct: 205 LKPKLIELQQLVVDNKIFIQRTANVGVLPLDVAINYGCTGPMLRGSGLRYDLRKVDGYSV 264
Query: 240 YSELDFDIPI-----GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDP 294
Y ELDF+IPI GK GDC+DR VR++E ESVKII Q + +L G DP
Sbjct: 265 YPELDFEIPIGEGKLGKVGDCWDRTWVRVVECWESVKIIEQSLVQLQGD--HRRTRDFDP 322
Query: 295 KIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGG-NKPY 353
+ + PK+ + Y E+PKGE G Y +DG + P
Sbjct: 323 QALVPKK--------------------IRPKAMDFYVRGESPKGELGFYFRTDGRADIPV 362
Query: 354 RCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
RCK RA + +L + + KG LAD+ A++GS+D+V GEVDR
Sbjct: 363 RCKARACSFNNLSVIGEISKGALLADLVAVIGSIDVVMGEVDR 405
>gi|212693813|ref|ZP_03301941.1| hypothetical protein BACDOR_03334 [Bacteroides dorei DSM 17855]
gi|212663702|gb|EEB24276.1| hypothetical protein BACDOR_03334 [Bacteroides dorei DSM 17855]
Length = 519
Score = 335 bits (860), Expect = 6e-90, Method: Composition-based stats.
Identities = 148/392 (37%), Positives = 214/392 (54%), Gaps = 29/392 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ IN GPQHPA HGVLR + L+GEI++++D H G +HRG EK+ E+ T+ Q +
Sbjct: 157 DEDEYIINIGPQHPATHGVLRFRVSLEGEIIKKLDVHCGYIHRGIEKMCESLTYPQTLAL 216
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDY+ HA + +E+ +G+E+ R Q IR + E+ RI SHLL + MD+G
Sbjct: 217 TDRLDYLGAHQNRHALCMCIEQAMGVEVSERVQYIRTIMDELQRIDSHLLFFSCLCMDMG 276
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
ALT +GF +REK++ +E +G R+ Y GGV DI P+ V+ + + L
Sbjct: 277 ALTAFFYGFRDREKILDIFEATTGGRLIQNYNTIGGVQADIAPDFVQKVKEFIAYLRPML 336
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ ++ TGN I ++R +G + EDA +G +G R SG A D+RK PY Y +++
Sbjct: 337 KEYHEVFTGNVIAQERLKGVGVLSREDAISFGATGGTGRASGWACDVRKRHPYAMYGKIN 396
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F + GDC+ RY+VRM E+ ES+ II Q ++ + N M
Sbjct: 397 FREIVHTEGDCFARYMVRMEEILESMNIIEQLIDNIPEGNYQ---------------EKM 441
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K VP G YAAVE +GEFGVYL S G PYR K RA G
Sbjct: 442 K--------------PIIRVPEGNYYAAVEGSRGEFGVYLESHGDKFPYRMKFRATGLPL 487
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ AME +C+ ++AD+ AI G++D V ++DR
Sbjct: 488 VSAMETMCRNAKIADLIAIGGTVDYVVPDIDR 519
>gi|219551893|gb|ACL26691.1| NADH dehydrogenase subunit 7 [Cucumis sativus]
Length = 344
Score = 335 bits (860), Expect = 6e-90, Method: Composition-based stats.
Identities = 204/346 (58%), Positives = 258/346 (74%), Gaps = 4/346 (1%)
Query: 31 DGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGI 90
+GE+VER +PHIGLLHRGTEKLIE KT+LQA+PY DR DYV+ M QEHA++ AVE+LL
Sbjct: 1 NGEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYSDRSDYVSTMAQEHAHSSAVERLLNC 60
Query: 91 EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSR 150
E+P+R Q IRVL+ EI RI +H L +TT AMDVGA TP LW FEEREKL FYER SG+R
Sbjct: 61 EVPLRAQYIRVLFREITRISNHSLALTTHAMDVGASTPFLWAFEEREKLFEFYERVSGAR 120
Query: 151 MHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLE 210
MHA++ RPGGV QD+P L DI + F S ++++ ++ TGNRI+KQR V+IGTV +
Sbjct: 121 MHASFIRPGGVAQDLPLGLCRDIDSFTQQFASRIDELEEMSTGNRIWKQRLVDIGTVTAQ 180
Query: 211 DAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESV 270
A WGFSGVM+RG G WDLR++ PY+ + +LD D+P+G GD YDRY +R+ EMR+SV
Sbjct: 181 QAKDWGFSGVMLRGPGVCWDLRRAAPYDVHDQLDPDVPVGTRGDRYDRYCIRIEEMRQSV 240
Query: 271 KIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVY 330
+II QC N++ G + A D K+ PP R+ MK SMES IHHF+LYTEG+ VP Y
Sbjct: 241 RIIVQCPNQM----PSGMIKADDRKLCPPSRSRMKLSMESSIHHFELYTEGFSVPASSTY 296
Query: 331 AAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQ 376
AVEAPKGEFGV+L+S+G N+PYR KIRAPG AH Q ++ + K H
Sbjct: 297 TAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSMSKHHM 342
>gi|301156409|emb|CBW15880.1| formate hydrogenlyase subunit 5 [Haemophilus parainfluenzae T3T1]
Length = 576
Score = 335 bits (860), Expect = 6e-90, Method: Composition-based stats.
Identities = 116/394 (29%), Positives = 175/394 (44%), Gaps = 32/394 (8%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETK-TFLQAV 62
+K + + GP H + L +DGE + D + +HRG EKL ET+ + Q
Sbjct: 182 EKGEARIVPLGPLHITSDEPGHFRLFVDGEDIIDADYRLFYVHRGMEKLAETRMDYDQVN 241
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
DR+ + AYA +VE LGI+IP R + IR + E+ R+ SHLLN+ +
Sbjct: 242 FLADRVCGICGFTHSVAYANSVESALGIQIPKRAEWIRAILLEVERLHSHLLNLGLSSHF 301
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
G T + F REK M E +G+R GGV +D+ E
Sbjct: 302 TGFDTGFMQFFRVREKSMTLAEVLTGARKTYGINLIGGVRRDMLKRQREQCIKLIGEMRE 361
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L ++D+L +QR V +G + + A + G MIRGSG A D+RK P+ Y +
Sbjct: 362 ELKTLTDILLNTPNMEQRTVGVGVLAKDIARDFSPVGPMIRGSGFARDVRKVHPFSGYGD 421
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+ F++ +GD R VR+ E+ ES+ II V+ L
Sbjct: 422 IPFNLFTEANGDVLSRVKVRINEVFESMNIIDYMVDNLP--------------------- 460
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
S E L F YT G EAP+GE + + K +R + RA Y
Sbjct: 461 ----SGEILKEGF-NYTPGRF-----ALGITEAPRGEDIHWSMLGDNQKLFRWRCRAATY 510
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 511 ANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 544
>gi|125975499|ref|YP_001039409.1| ech hydrogenase subunit E [Clostridium thermocellum ATCC 27405]
gi|256004213|ref|ZP_05429196.1| NADH-ubiquinone oxidoreductase chain 49kDa [Clostridium
thermocellum DSM 2360]
gi|281419468|ref|ZP_06250482.1| NADH-ubiquinone oxidoreductase chain 49kDa [Clostridium
thermocellum JW20]
gi|125715724|gb|ABN54216.1| ech hydrogenase subunit E [Clostridium thermocellum ATCC 27405]
gi|255991803|gb|EEU01902.1| NADH-ubiquinone oxidoreductase chain 49kDa [Clostridium
thermocellum DSM 2360]
gi|281406874|gb|EFB37138.1| NADH-ubiquinone oxidoreductase chain 49kDa [Clostridium
thermocellum JW20]
gi|316939619|gb|ADU73653.1| NADH-ubiquinone oxidoreductase chain 49kDa [Clostridium
thermocellum DSM 1313]
Length = 359
Score = 335 bits (860), Expect = 6e-90, Method: Composition-based stats.
Identities = 110/391 (28%), Positives = 189/391 (48%), Gaps = 33/391 (8%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ I FGPQHP + L L L+ E V P IG +HRG EKL+E K + Q V
Sbjct: 2 GKKTVIPFGPQHPVLPEPIHLDLVLEDETVVEAIPSIGYIHRGLEKLVEKKDYQQFVYVA 61
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
+R+ + Y +++E ++G++IP R + +R +++E+ RI SH+L + A +G
Sbjct: 62 ERICGICSFMHGMGYCMSIENIMGVQIPERAEFLRTIWAELSRIHSHMLWLGLLADALGF 121
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ + + RE+++ +E +G R+ + GGV +DI E+++ I D F +
Sbjct: 122 ESLFMHSWRLREQILDIFEETTGGRVIFSVCDIGGVRRDIDSEMLKKINSILDGFEKEFS 181
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+I+ + + K R +G + E+A+ G G M R SG D+RKS Y Y +L
Sbjct: 182 EITKVFLNDSSVKLRTQGLGVLSREEAFELGAVGPMARASGIDIDMRKSG-YAAYGKLKI 240
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ + GDCY R VR+ E+ +S+ +IRQC++ + + +
Sbjct: 241 EPVVETAGDCYARTSVRIREVFQSIDLIRQCISLIPDGEIKVKIVGN------------- 287
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
P GE + +E P+GE Y+ ++G R ++R P +A++
Sbjct: 288 -------------------PSGEYFTRLEQPRGEVLYYVKANGTKFLERFRVRTPTFANI 328
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A+ KG QLADV ++ ++D +R
Sbjct: 329 PALLHTLKGCQLADVPVLILTIDPCISCTER 359
>gi|294630639|ref|ZP_06709199.1| NADH dehydrogenase I, B subunit [Streptomyces sp. e14]
gi|292833972|gb|EFF92321.1| NADH dehydrogenase I, B subunit [Streptomyces sp. e14]
Length = 383
Score = 335 bits (859), Expect = 7e-90, Method: Composition-based stats.
Identities = 135/394 (34%), Positives = 206/394 (52%), Gaps = 28/394 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+S +N GPQHP+ HGVLRL L LDGE + R +P IG +HRG EKL E + + Q +
Sbjct: 15 AESTDMVLNIGPQHPSTHGVLRLKLVLDGERITRAEPVIGYMHRGAEKLFEARDYRQIIM 74
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+R D+++ + E LAVE++LG+E+P R R L +E+ R+L+HL+ + + +++
Sbjct: 75 LANRHDWLSAFSNELGVVLAVERMLGMEVPERAVWTRTLLAELNRVLNHLMFLGSYPLEL 134
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP + F ERE L E SG RMH + R GG+ +D+P + S
Sbjct: 135 GGITPVFYAFREREVLQNVMEEVSGGRMHYMFNRVGGLKEDLPAGWSTRARAAVAAVRSR 194
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
++ DL+ GN IF+ R +G + +G SG + R SG +DLR+ +PY Y EL
Sbjct: 195 MDVFDDLVLGNEIFRGRTRGVGALSPRAVHAYGVSGPIARASGVDFDLRRDEPYLAYGEL 254
Query: 244 DF--DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ + GDC R+ + + ++ + C++RL + GPV+ PK++
Sbjct: 255 GDVLKVVTRREGDCLARFECLLEQTHNALALADACLDRL-AELPPGPVNQRLPKVL---- 309
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
P G YA E P G G YL+S G PYR K+R+
Sbjct: 310 ---------------------KAPEGHTYAWTENPLGINGYYLVSKGEKTPYRLKLRSAS 348
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
Y ++QA+ L G +AD+ AILGS+ V G++D
Sbjct: 349 YNNIQALAELLPGTLVADMVAILGSMFFVVGDID 382
>gi|242280698|ref|YP_002992827.1| NADH-ubiquinone oxidoreductase chain 49kDa [Desulfovibrio
salexigens DSM 2638]
gi|242123592|gb|ACS81288.1| NADH-ubiquinone oxidoreductase chain 49kDa [Desulfovibrio
salexigens DSM 2638]
Length = 358
Score = 335 bits (859), Expect = 8e-90, Method: Composition-based stats.
Identities = 111/389 (28%), Positives = 179/389 (46%), Gaps = 33/389 (8%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
I FGPQHP L + L ++ EIV+ P +G +HRG EKL E + + Q + +R
Sbjct: 3 RTIIPFGPQHPVLPEPLHVKLVVEDEIVQEAIPALGYVHRGLEKLAEIRDYHQMIQVVER 62
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ + Y +E+++GIE+P R + +R ++SE+ R+ SHLL + A G
Sbjct: 63 VCGICSNIHSMCYCQGIEEMMGIEVPERAEYLRTIWSELHRMHSHLLWLGLFADAFGFEA 122
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
+ + RE++M E +GSR+ + GGV QD+ PE+ I D+ + +I
Sbjct: 123 LFMQFWRIRERIMDINEATTGSRVITSVNVVGGVRQDLTPEMCSWILSEVDTCEKEIKEI 182
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ + + R +GT+ E A+ G +G +RGSG A D+R Y + ++DF+
Sbjct: 183 QNTILNDYTVCARTKGVGTLTKEQAYDLGAAGPTLRGSGVASDMR-LLKYAAFDKIDFEP 241
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
+ GDC+ R VR E +S ++RQ + L + P +
Sbjct: 242 IVETDGDCWARSTVRFRETLQSADLVRQAIAGLPQGDIAAPCKGN--------------- 286
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
P GEV VE P+GE YL G R +IR P +A++
Sbjct: 287 -----------------PEGEVITRVEQPRGECLYYLKGSGKKFLDRVRIRTPTFANIPP 329
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + +LADV I+ S+D +R
Sbjct: 330 LLAMLPNCELADVPVIILSIDPCISCTER 358
>gi|206890051|ref|YP_002248827.1| hydrogenase-4 component G [Thermodesulfovibrio yellowstonii DSM
11347]
gi|206741989|gb|ACI21046.1| hydrogenase-4 component G [Thermodesulfovibrio yellowstonii DSM
11347]
Length = 541
Score = 335 bits (859), Expect = 8e-90, Method: Composition-based stats.
Identities = 120/397 (30%), Positives = 187/397 (47%), Gaps = 32/397 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIET-KTFL 59
+ K + I GP +P+ L +DGE + D +HRG EKL E+ +
Sbjct: 154 LKKPEEGKTVIPIGPFYPSLEEPAYFRLIVDGEEIADFDYRGFYVHRGIEKLAESVLNYQ 213
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
Q +R+ + AY AVEK GIEIP+R + IR L+ E+ R+ SHLL V
Sbjct: 214 QIPFLAERICGICGFVHSCAYCQAVEKAAGIEIPLRAKFIRSLFLELERLHSHLLWVGLA 273
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
A VG T + + RE +M E +G+R GGV D+ + ++DI
Sbjct: 274 AHIVGFDTLFMQAWRIREPVMYICEIITGNRKTYGINIVGGVTIDVHNQHLKDIDKVISQ 333
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++ +++ + + + R N+G +K +DA + G + RGSG D+R + PY
Sbjct: 334 IEKEVRELREIILDDEVIQLRFKNVGVLKYDDAKKYCVCGPVARGSGINIDMRTNFPYAA 393
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y L+ IP+ K GD + R +VR+ E+ S+ IIRQ + + GP S KI P
Sbjct: 394 YPMLNIRIPLNKSGDVWARTIVRLEEILISINIIRQILENI----PEGPTSIKISKIEPW 449
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
K E + +EAP+G+ Y+++ +PYR +RA
Sbjct: 450 K---------------------------EAVSYIEAPRGQLFHYVMTGPEGRPYRWSVRA 482
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
P Y + QA+ + KG +AD I+GS+D F +R
Sbjct: 483 PSYQNYQALSVMLKGASIADAPLIIGSIDPCFSCTER 519
>gi|218534473|sp|Q1AVI6|NUOD_RUBXD RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
Length = 396
Score = 334 bits (858), Expect = 9e-90, Method: Composition-based stats.
Identities = 157/395 (39%), Positives = 221/395 (55%), Gaps = 30/395 (7%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
D+ + +N GPQHPA HG+LRLILELDGE + R DP +G LHR EK+ E +T+
Sbjct: 30 DEFGLETLDMNMGPQHPAMHGLLRLILELDGETIVRCDPVMGYLHRCQEKIAENRTYPAV 89
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+P DRLDY A M+ EH Y LAVE LLG+EIP R + IRVL E+ RI SHL ++ +
Sbjct: 90 IPLTDRLDYFANMHNEHGYCLAVEDLLGVEIPPRAEYIRVLMCELMRIASHLPSIGFLLL 149
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
++GA TP L+ F ERE++ F+E +G+RM Y R GGV D+PP++ E I + +
Sbjct: 150 ELGAFTPILYAFRERERIQNFFEAVTGARMMFHYIRIGGVKADLPPDIPEKIWEYVEGLE 209
Query: 182 SALN-DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ D DL+ GN IF +R I + E+A G +G +R +G A+D+R+ PY Y
Sbjct: 210 KRIKPDFIDLIEGNEIFIERTRGISRLTQEEAIELGLTGPPLRCTGVAFDVRRDYPYSVY 269
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
ELDF++ GD Y VR+ E+ ES+KIIRQC+ ++ +G V
Sbjct: 270 PELDFEVVTDTAGDVEASYRVRIKEVYESIKIIRQCLEKMPEGEVMGDVGRR-------- 321
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
P GE + VE P+GEF V+++SDG + PYR R P
Sbjct: 322 ---------------------VRPPEGEGFGRVEGPRGEFAVHVVSDGSDTPYRVHYRDP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ ++Q ++ GH L D+ I+G +D V G D
Sbjct: 361 SFVNMQLLQEKMPGHYLPDIMPIMGLVDPVSGGWD 395
>gi|146304645|ref|YP_001191961.1| NADH dehydrogenase subunit D [Metallosphaera sedula DSM 5348]
gi|145702895|gb|ABP96037.1| NADH dehydrogenase subunit D [Metallosphaera sedula DSM 5348]
Length = 405
Score = 334 bits (858), Expect = 9e-90, Method: Composition-based stats.
Identities = 137/388 (35%), Positives = 211/388 (54%), Gaps = 7/388 (1%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+N GPQHP + G +R+ ++L+G+I+E + G +HR EKL E + ++ +P +R
Sbjct: 24 ELNVGPQHPGS-GHMRIFVKLNGDIIEDAEIDPGYVHRAVEKLGENRNYIHLIPLVERPA 82
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ +N Y LAVEK+L +++P R Q +R +EI RI SHL + A+ +G T
Sbjct: 83 ILDSVNMNLGYILAVEKILNVDVPERAQYLRSFAAEISRIASHLYGMGILAIFIGHSTGF 142
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+WGF +RE + E +G+R+ +Y PGGV +D+ P ++E + D
Sbjct: 143 MWGFGDREVWVQILEALTGARITNSYILPGGVRRDLTPAVIEMTKKAIAYQRKKMKDWER 202
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ N K R ++G + E A WG +G +RGSG +D RK++PY YS+LDF+IP+
Sbjct: 203 IFLNNPNIKARLQDVGVMTREQAIEWGAAGPNLRGSGVYYDARKAEPYGAYSKLDFEIPV 262
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
K GD Y R LVR E+ +S++I+ Q + + +S K +PP R +K+ E
Sbjct: 263 YKEGDGYARTLVRFEEIEQSLRILEQVIKDIPEGQI---LSDRFFKQIPPTR--LKKWWE 317
Query: 310 SLIHH-FKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
Y + P GE + VEA +GE Y++SDG KPYR ++ P Y + M
Sbjct: 318 GQKRIVMPGYYASFRPPKGEAISRVEAGRGELVYYVVSDGSAKPYRLRMITPSYRSIYVM 377
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ L KG + AD+ +I GSLD E DR
Sbjct: 378 KNLLKGARYADLVSIYGSLDYFPPEADR 405
>gi|312793273|ref|YP_004026196.1| NADH-ubiquinone oxidoreductase chain 49kda [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312180413|gb|ADQ40583.1| NADH-ubiquinone oxidoreductase chain 49kDa [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 359
Score = 334 bits (858), Expect = 1e-89, Method: Composition-based stats.
Identities = 115/391 (29%), Positives = 182/391 (46%), Gaps = 33/391 (8%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ + FGPQHP L+L L L+ E V P IG +HRG EKL E K Q +
Sbjct: 2 GKRTIVPFGPQHPVLPEPLQLRLVLEDEKVVEAIPAIGYVHRGLEKLAEEKDINQNIYVV 61
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
+R+ + Q AY +E+L+GIE+P R + +RV+++E+ R+ SH L + A G
Sbjct: 62 ERVCGICSFQQALAYCQGIEELMGIEVPDRARYLRVIWAELHRLHSHHLWLGLLADAFGF 121
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ + + RE +M E +GSR+ + GGV +DI + + I L
Sbjct: 122 ESLFMQCWRNRELVMDLMEATAGSRVIISTNIIGGVRRDIDLDKQKFILNNLAKLEEELK 181
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
I + K+R V +G + ++A+ G G M R SG + DLR Y Y ELDF
Sbjct: 182 KIEGSFLNDYTVKKRLVGVGVLSKQEAYELGCVGPMARASGISMDLRTLG-YAAYGELDF 240
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ + GDCY R VR+ E +S+ +IRQ ++++ PV
Sbjct: 241 EPVVENDGDCYARLKVRLRECYQSIDLIRQAISKMPEGELSTPVKGF------------- 287
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
P GE+ + VE P+GE Y+ ++G R +IR P +A++
Sbjct: 288 -------------------PSGEIISRVEQPRGEDVYYIKANGTKNLERLRIRTPTFANI 328
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A+ + +G ADV ++ ++D +R
Sbjct: 329 PALVKMLQGVDFADVPMLVLTIDPCISCTER 359
>gi|293392057|ref|ZP_06636391.1| hydrogenase-4 component G [Aggregatibacter actinomycetemcomitans
D7S-1]
gi|290952591|gb|EFE02710.1| hydrogenase-4 component G [Aggregatibacter actinomycetemcomitans
D7S-1]
Length = 576
Score = 334 bits (858), Expect = 1e-89, Method: Composition-based stats.
Identities = 115/394 (29%), Positives = 177/394 (44%), Gaps = 32/394 (8%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETK-TFLQAV 62
+K + + GP H + L +DGE + D + +HRG EKL ET+ + Q
Sbjct: 182 EKGEARIVPIGPLHITSDEPGHFRLFVDGEDIIDADYRLFYVHRGMEKLAETRMDYDQVN 241
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
DR+ + AYA +VE LGI+IP R Q IR + E+ R+ SHLLN+ +
Sbjct: 242 FLADRVCGICGFTHSVAYANSVESALGIQIPKRAQWIRAILLEVERLHSHLLNLGLSSHF 301
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
G T + F REK M E +G+R GGV +D+ E +
Sbjct: 302 TGFDTGFMQFFRVREKSMTLAEVLTGARKTYGINLIGGVRRDMLKHQREQCIKLITEMRA 361
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ +S++L +QR V +G + + A + G MIRGSG A D+RK P+ Y +
Sbjct: 362 EIKTLSEILLSTPNMEQRTVGVGILAKDIARDFSPVGPMIRGSGFARDVRKVHPFSGYGD 421
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+ F++ ++GD R VR+ E+ +S+ II V+ L
Sbjct: 422 VPFELFTEQNGDVLSRVKVRINEVFKSMNIIDYMVDNLP--------------------- 460
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
S E L F YT G EAP+GE + + K +R + RA Y
Sbjct: 461 ----SGEILKEGF-NYTPGRF-----ALGITEAPRGEDIHWSMLGDNQKLFRWRCRAATY 510
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 511 ANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 544
>gi|312877213|ref|ZP_07737182.1| NADH-ubiquinone oxidoreductase chain 49kDa [Caldicellulosiruptor
lactoaceticus 6A]
gi|311796022|gb|EFR12382.1| NADH-ubiquinone oxidoreductase chain 49kDa [Caldicellulosiruptor
lactoaceticus 6A]
Length = 359
Score = 334 bits (858), Expect = 1e-89, Method: Composition-based stats.
Identities = 115/391 (29%), Positives = 181/391 (46%), Gaps = 33/391 (8%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ + FGPQHP L+L L L+ E V P IG +HRG EKL E K Q +
Sbjct: 2 GKRTIVPFGPQHPVLPEPLQLRLVLEDEKVVEAIPAIGYVHRGLEKLAEEKDINQNIYVV 61
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
+R+ + Q AY +E+L+GIE+P R + +RV+++E+ R+ SH L + A G
Sbjct: 62 ERVCGICSFQQALAYCQGIEELMGIEVPDRARYLRVIWAELHRLHSHHLWLGLLADAFGF 121
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ + + RE +M E +GSR+ + GGV +DI + + I L
Sbjct: 122 ESLFMQCWRNRELVMDLMEATAGSRVIISTNIIGGVRRDIDLDKQKFILDNLAKLEEELK 181
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
I + K+R V +G + ++A+ G G M R SG DLR Y Y ELDF
Sbjct: 182 KIEGSFLNDYTVKKRLVGVGVLSKQEAYELGCVGPMARASGIKMDLRTLG-YAAYGELDF 240
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ + GDCY R VR+ E +S+ +IRQ ++++ PV
Sbjct: 241 EPVVENDGDCYARLKVRLSECYQSIDLIRQAISKMPEGEISTPVKGF------------- 287
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
P GE+ + VE P+GE Y+ ++G R +IR P +A++
Sbjct: 288 -------------------PNGEIISRVEQPRGEDVYYIKANGTKNLERLRIRTPTFANI 328
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A+ + +G ADV ++ ++D +R
Sbjct: 329 PALVKMLQGVDFADVPMLVLTIDPCISCTER 359
>gi|282866348|ref|ZP_06275393.1| NADH dehydrogenase (quinone) [Streptomyces sp. ACTE]
gi|282558744|gb|EFB64301.1| NADH dehydrogenase (quinone) [Streptomyces sp. ACTE]
Length = 380
Score = 334 bits (858), Expect = 1e-89, Method: Composition-based stats.
Identities = 134/394 (34%), Positives = 206/394 (52%), Gaps = 28/394 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+S +N GPQHP+ HGVLRL L LDGE V++ +P IG +HRG EKL E + + Q +
Sbjct: 12 AESTDMVLNIGPQHPSTHGVLRLRLVLDGERVQQAEPVIGYMHRGAEKLFEARDYRQIIM 71
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+R D+++ + E +AVE++LG+E+P R R L +E+ R+L+HL+ + + +++
Sbjct: 72 LANRHDWLSAFSNELGVVMAVERMLGMEVPERAVWTRTLLAELNRVLNHLMFLGSYPLEL 131
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP F ERE+L E SG RMH + R GG+ +D+P + S S
Sbjct: 132 GGITPMFHAFREREELQAVMEEVSGGRMHYMFNRVGGLKEDLPAGWLGRARDAVASVRSR 191
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE- 242
++ L+ GN IF+ R +G + E G+G SG + R SG +DLR+ +PY Y E
Sbjct: 192 MDVYDRLVLGNEIFRGRTRGVGVLSAEAVHGYGVSGPIARASGVDFDLRRDEPYLAYGEL 251
Query: 243 -LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ GDC R+ + + ++ + C++R+ GP++ PK++
Sbjct: 252 ADTLKVVTRSEGDCLARFECLLEQTHNALDLADACLDRMADLAP-GPINQRLPKVL---- 306
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
P G YA E P G G YL+S G PYR K+R+
Sbjct: 307 ---------------------KAPEGHTYAWTENPLGINGYYLVSTGEKTPYRLKLRSAS 345
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
Y ++QA+ L G +AD+ AILGSL V G++D
Sbjct: 346 YNNIQALTELLPGTLVADMVAILGSLFFVVGDID 379
>gi|240102117|ref|YP_002958425.1| formate hydrogenlyase II subunit F (Mhy2F) [Thermococcus
gammatolerans EJ3]
gi|239909670|gb|ACS32561.1| formate hydrogenlyase II subunit F (Mhy2F) [Thermococcus
gammatolerans EJ3]
Length = 578
Score = 334 bits (858), Expect = 1e-89, Method: Composition-based stats.
Identities = 113/388 (29%), Positives = 165/388 (42%), Gaps = 32/388 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETK-TFLQAVPYFDRL 68
GP H A L + GE + VD + HRG EK+ E + T+ Q +R+
Sbjct: 192 VFPLGPYHVALDEPGHFRLYVKGEEIVDVDYRLFYQHRGIEKIGENRLTYDQVNFIAERI 251
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+ AYA AVE G+E+P R + IR + +EI R+ SHLLN+ DVG
Sbjct: 252 CGICGTAHALAYAQAVEAAGGVEVPERAEYIRTVMAEIERLHSHLLNLGLACHDVGFDKG 311
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
+ F RE +M ER +G+R GGV +D I +
Sbjct: 312 FMDAFRLREHVMWLAERLTGNRKTYGMVVIGGVRRDFLEYRRSMIEKVIRELREGFQKWA 371
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
D + F +R +G + +DA W G RGSG D R+ P+ Y LDF +P
Sbjct: 372 DQTLSTKTFVKRCEGVGVLSYKDAKRWSSVGPWARGSGRDLDARRDHPFAAYKYLDFKVP 431
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
+ K GD R LVR E+ ES+ II Q ++ + G +
Sbjct: 432 VYKEGDVLARCLVRAEEILESIWIIEQALDEMPGGDI----------------------- 468
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
L P E EAP+GE Y+++ GN+ YR +IRA Y + A+
Sbjct: 469 --------LAEWKEIPPYQEAVGFTEAPRGEDVHYVMTGEGNRLYRWRIRASTYNNFPAL 520
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVDR 396
+G+ +AD I+ S+D + +R
Sbjct: 521 PDAMRGNSVADAVLIIASMDPCYSCTER 548
>gi|182412569|ref|YP_001817635.1| NADH dehydrogenase (quinone) [Opitutus terrae PB90-1]
gi|218534440|sp|B1ZUJ2|NUOD2_OPITP RecName: Full=NADH-quinone oxidoreductase subunit D 2; AltName:
Full=NADH dehydrogenase I subunit D 2; AltName:
Full=NDH-1 subunit D 2
gi|177839783|gb|ACB74035.1| NADH dehydrogenase (quinone) [Opitutus terrae PB90-1]
Length = 399
Score = 334 bits (858), Expect = 1e-89, Method: Composition-based stats.
Identities = 143/390 (36%), Positives = 215/390 (55%), Gaps = 28/390 (7%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+FTIN GPQHPAAHGVLR+++ +DGE VE +P IG +HR EK+ E +T+ + +P
Sbjct: 38 ETFTINLGPQHPAAHGVLRVLMRMDGEWVENAEPVIGYIHRMHEKMGENRTWAKFLPNTS 97
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+DY++ M+ HA+ VE+ L IE+P R + IRV+ SE+ RI SH + +D+G
Sbjct: 98 RIDYLSAMHYTHAWVGVVERGLKIEVPERAEYIRVITSELNRIASHQVWWGALLLDLGGF 157
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP L+ F++REK++ E G+R+ Y+R GG++ D + ++ + L
Sbjct: 158 TPILYAFDDREKILDLLEGLCGARLTYCYYRFGGLYNDADDDFLKGTREFVKYMRPRLKM 217
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
DL+T N I +QR IG + + +G +G +IRGSG A+D+R+++PY Y +L F
Sbjct: 218 YRDLVTDNVILRQRLTGIGPISADTCRKYGATGPVIRGSGVAYDVRRAEPYSVYPKLQFK 277
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
IP D RYLVRM EM ES+ II QC++ + + P
Sbjct: 278 IPTYPECDSMARYLVRMDEMEESLNIIEQCLDLIQPGPFMAP------------------ 319
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+P G+ AVEA +G F V ++SDG PYR ++R P + +L
Sbjct: 320 ----------KVPRVIRLPAGDYTYAVEAARGRFMVRVVSDGKENPYRARLRTPSFGNLS 369
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
E +G L D A++GSLD+V ++DR
Sbjct: 370 LFEETSRGMLLPDALAMMGSLDLVIPDIDR 399
>gi|254385648|ref|ZP_05000971.1| NADH dehydrogenase I chain D [Streptomyces sp. Mg1]
gi|194344516|gb|EDX25482.1| NADH dehydrogenase I chain D [Streptomyces sp. Mg1]
Length = 380
Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats.
Identities = 131/394 (33%), Positives = 204/394 (51%), Gaps = 28/394 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+S +N GPQHP+ HGVLRL L LDGE + +P +G +HRG EKL E + + Q V
Sbjct: 12 AESTDMVLNIGPQHPSTHGVLRLRLVLDGERIVSAEPVVGYMHRGAEKLFEARDYRQIVM 71
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+R D+++ + E +AVE++LG+E+P R +R L +E+ R+L+HL+ + + +++
Sbjct: 72 LANRHDWLSAFSNELGVVMAVERMLGMEVPERAVWMRTLLAELNRVLNHLMFLGSYPLEL 131
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP F ERE+L E SG RMH + R GG+ +D+P + +
Sbjct: 132 GGITPIFHAFREREELQAVMEEISGGRMHYMFNRVGGLKEDLPAGWLGRARAAVADVRTR 191
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
++ L+ GN IF+ R +G + E +G SG + R SG +DLR+ +PY Y EL
Sbjct: 192 MDVYDKLVHGNEIFRGRTRGVGVLSAEAVHAYGVSGPIARASGVDFDLRRDEPYLAYGEL 251
Query: 244 DF--DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ GDC R+ + + ++ + C++R+ GPV+ PK++
Sbjct: 252 QDVLKVVTRTEGDCLARFECLLEQTHNALDLAVACLDRM-ADLPPGPVNQRLPKVL---- 306
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
P G YA E P G G YL+S G PYR K+R+
Sbjct: 307 ---------------------KAPEGATYAWTENPLGINGYYLVSKGEKTPYRLKLRSAS 345
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ ++QA+ L G +AD+ AILGSL V G++D
Sbjct: 346 FNNIQALAVLLPGQLVADMVAILGSLFFVVGDID 379
>gi|302553183|ref|ZP_07305525.1| NADH dehydrogenase (quinone), D subunit [Streptomyces
viridochromogenes DSM 40736]
gi|302470801|gb|EFL33894.1| NADH dehydrogenase (quinone), D subunit [Streptomyces
viridochromogenes DSM 40736]
Length = 383
Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats.
Identities = 135/394 (34%), Positives = 207/394 (52%), Gaps = 28/394 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+S +N GPQHP+ HGVLRL L LDGE + +P IG +HRG EKL E + + Q +
Sbjct: 15 AESTDMVLNIGPQHPSTHGVLRLKLVLDGERITHAEPVIGYMHRGAEKLFEARDYRQIIM 74
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+R D+++ + E LAVE++LG+E+P R +R L +E+ R+L+HL+ + + +++
Sbjct: 75 LANRHDWLSAFSNELGVVLAVERMLGMEVPERAVWLRTLLAELNRVLNHLMFLGSYPLEL 134
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP + F ERE+L E SG RMH + R GG+ +D+P S
Sbjct: 135 GGITPIFYAFREREELQHVMEEISGGRMHYMFNRVGGLKEDLPAGWTTRARTAVADVRSR 194
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
++ DL+ GN IF+ R +GT+ E +G SG + R SG +DLR+ +PY Y EL
Sbjct: 195 MDRFDDLVLGNEIFRGRTRGVGTLAPEAVHAYGVSGPIGRASGVDFDLRRDEPYLAYGEL 254
Query: 244 DF--DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ + GDC R+ + + ++ + C++RL + GPV+ PK++
Sbjct: 255 GDVLKVVTRQEGDCLARFECLLEQTHNALDLADACLDRL-AELPPGPVNQRLPKVL---- 309
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
P G YA E P G G YL+S G PYR K+R+
Sbjct: 310 ---------------------KAPEGHTYAWTENPLGINGYYLVSKGEKTPYRLKLRSAS 348
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
Y ++Q + L G +AD+ AILGS+ V G++D
Sbjct: 349 YNNIQVLTELLPGTLVADMVAILGSMFFVVGDID 382
>gi|261368108|ref|ZP_05980991.1| carbon monoxide-induced hydrogenase, large subunit [Subdoligranulum
variabile DSM 15176]
gi|282569866|gb|EFB75401.1| carbon monoxide-induced hydrogenase, large subunit [Subdoligranulum
variabile DSM 15176]
Length = 359
Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats.
Identities = 110/387 (28%), Positives = 181/387 (46%), Gaps = 33/387 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ FGPQHP + L L L+ E+V P IG +HRG EKL+ETK F + V +R+
Sbjct: 6 IVPFGPQHPVLPEPIHLDLVLEDEVVVEAVPSIGFVHRGLEKLVETKDFKEYVYIAERVC 65
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ Y +E ++ +E+P RG+ +R ++ E+ RI SHLL + A +G +
Sbjct: 66 GICSFGHGLGYCQTLEHIMNVEVPPRGRYLRTIWMEMSRIHSHLLWLGLLADAMGFESLF 125
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ ++ REK++ ++ +G R+ + GGV +D+ ++++I C+ L I+D
Sbjct: 126 MESWKLREKILDMFDATTGGRVIFSVNCIGGVLKDMDETMLKNIVDTCNDMEKELKPIAD 185
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ R +G + EDA G G M+R SG ++D RK Y Y ELD +
Sbjct: 186 AFLRDYTTGSRLHGLGVLTPEDATLMGAVGPMLRASGVSYDARKLG-YAAYGELDLEPVT 244
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD Y R VR+ E+ +S +IRQ ++ PV
Sbjct: 245 ATEGDSYARCEVRIREIHQSFDLIRQAAAKIPAGPIAVPVKGF----------------- 287
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
P GE + +E P+GE Y+ ++G R ++R P +++ M
Sbjct: 288 ---------------PQGEYFTRIEQPRGEAIYYVKANGTKFIERFRLRTPTTSNIPPML 332
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVDR 396
+ KG QLADV ++ ++D +R
Sbjct: 333 NMLKGCQLADVPLLILTIDPCISCTER 359
>gi|302872079|ref|YP_003840715.1| NADH-ubiquinone oxidoreductase chain 49kDa [Caldicellulosiruptor
obsidiansis OB47]
gi|302574938|gb|ADL42729.1| NADH-ubiquinone oxidoreductase chain 49kDa [Caldicellulosiruptor
obsidiansis OB47]
Length = 359
Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats.
Identities = 117/391 (29%), Positives = 181/391 (46%), Gaps = 33/391 (8%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ + FGPQHP L+L L L+ E V P IG +HRG EKL E K Q +
Sbjct: 2 GKRTIVPFGPQHPVLPEPLQLRLVLEDEKVVEAIPAIGYVHRGLEKLAEEKDINQNIYVV 61
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
+R+ + Q AY +E+L+GIE+P R + +RV+++E+ R+ SH L + A G
Sbjct: 62 ERVCGICSFQQALAYCQGIEELMGIEVPDRARYLRVIWAELHRLHSHHLWLGLLADAFGF 121
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ + + RE +M E +GSR+ + GGV +DI + + I L
Sbjct: 122 ESLFMQCWRNRELVMDLMEATAGSRVIISTNIIGGVRRDIDLDKQKFILENLAKLEEELK 181
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
I + K+R V +G + ++A+ G G M R SG DLR Y Y ELDF
Sbjct: 182 KIEGSFLNDYTVKKRLVGVGVLTKQEAYELGCVGPMARASGIKMDLRTLG-YAAYGELDF 240
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ I GDCY R VR+ E +S+ +IRQ ++++ PV
Sbjct: 241 EPVIENDGDCYARLKVRLRECYQSIDLIRQAISKMPEGEISTPVKGF------------- 287
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
P GEV + VE P+GE Y+ ++G R +IR P +A++
Sbjct: 288 -------------------PNGEVISRVEQPRGEDVYYIKANGTKNLERLRIRTPTFANI 328
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A+ + +G ADV ++ ++D +R
Sbjct: 329 PALVKMLQGVDFADVPMLVLTIDPCISCTER 359
>gi|313202844|ref|YP_004041501.1| NADH dehydrogenase subunit d; NADH dehydrogenase subunit c
[Paludibacter propionicigenes WB4]
gi|312442160|gb|ADQ78516.1| NADH dehydrogenase subunit D; NADH dehydrogenase subunit C
[Paludibacter propionicigenes WB4]
Length = 542
Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats.
Identities = 141/392 (35%), Positives = 204/392 (52%), Gaps = 29/392 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ + IN GPQHP+ HGV+ LDGEIV+++D H G +HRG EKL E+ T+ Q + +
Sbjct: 180 EEDDYIINIGPQHPSTHGVMHFRTALDGEIVKKIDVHSGYIHRGIEKLSESLTYPQILHF 239
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDY++ H L VEK IE+P R Q IR + E+ RI SHLL Q D+G
Sbjct: 240 TDRLDYLSANINRHGLCLCVEKAAEIEVPERAQYIRTIMDELNRIDSHLLAWACQTNDLG 299
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A T ++G ERE ++ +E+ G R+ GGV DI E +D+ + + L
Sbjct: 300 ATTAFIYGMREREIILDIFEKTCGGRLIINQNVIGGVMFDIYNEFQKDVKAFIPYMRTKL 359
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ + N I R + IG + EDA + +G RGSG + D+RK PY Y +++
Sbjct: 360 VEYDRFFSHNVIALGRMIGIGNMSKEDAINYAVTGPAGRGSGWSCDIRKHIPYALYDKVE 419
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F I GD Y RYL R+ E+ +S+ II Q ++ + G V A I+
Sbjct: 420 FKEIIRTEGDSYARYLNRLDEIEQSLHIIEQLIDNI----PEGDVCAKTKAII------- 468
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
+P GE ++ VEA +GEFGV++ S G PYR K R+P A
Sbjct: 469 ------------------KLPEGEYFSRVEACRGEFGVFIESRGDKTPYRLKFRSPSMAL 510
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ AM +CK +++D I GS+D V ++DR
Sbjct: 511 VSAMPLICKNEKISDFIGIGGSMDYVIPDIDR 542
>gi|332087931|gb|EGI93056.1| hydrogenase-4 component G [Shigella boydii 5216-82]
Length = 571
Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats.
Identities = 109/398 (27%), Positives = 172/398 (43%), Gaps = 34/398 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E +GSR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A + G +IRGSG A DLR PY
Sbjct: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQIARDYSPVGPLIRGSGFARDLRFDHPYAD 413
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 414 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 458
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 459 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 501
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 502 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 539
>gi|313156893|gb|EFR56331.1| respiratory-chain NADH dehydrogenase, 49 kD subunit [Alistipes sp.
HGB5]
Length = 537
Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats.
Identities = 141/392 (35%), Positives = 206/392 (52%), Gaps = 29/392 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ + IN GPQHPA HGVLR + L+GEI++++D H G +HRG EKL E T+ Q +
Sbjct: 175 EEDEYVINVGPQHPATHGVLRFRVSLEGEIIKKLDVHCGYIHRGIEKLCEGLTYPQTLAL 234
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDY+ HA + +EK LG+E+ R Q IR + E+ RI SHLL MD+G
Sbjct: 235 TDRLDYLGAAQNRHALCMCIEKGLGVEVSERVQYIRTIMDELQRIDSHLLFFACLCMDMG 294
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
ALT +GF +REK++ E+ +G R+ Y GGV DI P V + + L
Sbjct: 295 ALTAFFYGFRDREKVLDILEQTTGGRLIQTYNTIGGVQADIHPGFVRKVKEFIAYMRPLL 354
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ ++ TGN I ++R G + EDA +G +G R +G A D+RK PY Y ++
Sbjct: 355 REYHEIFTGNVIAQERLKGTGVLTREDAISFGATGGTGRAAGWACDVRKRHPYAMYGKVG 414
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F+ + GDC+ RY+VRM E+ +S+ I+ Q ++ +
Sbjct: 415 FEEVLFTEGDCFARYMVRMREIEQSMNIVEQLIDNIPEGEYQ------------------ 456
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
+P G YAAVE +GEFGV++ S G PYR K R+ G
Sbjct: 457 -----------LKMKPVIRIPEGSYYAAVEGSRGEFGVFIESRGDKSPYRMKFRSTGLPL 505
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +E + KG ++AD+ AI G+LD V ++DR
Sbjct: 506 VSCLETIAKGTKIADLIAIGGTLDYVVPDIDR 537
>gi|283780214|ref|YP_003370969.1| NADH dehydrogenase (quinone) [Pirellula staleyi DSM 6068]
gi|283438667|gb|ADB17109.1| NADH dehydrogenase (quinone) [Pirellula staleyi DSM 6068]
Length = 401
Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats.
Identities = 147/413 (35%), Positives = 219/413 (53%), Gaps = 48/413 (11%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGVLRL+L DGEIV +V+PH+G LHR EK+ E T Q +PY
Sbjct: 16 RTDEMLVNMGPQHPSTHGVLRLVLRTDGEIVSQVEPHLGYLHRCAEKIGENLTPRQWIPY 75
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY+A MN +AL VEKLLG +I + + +RV+ +E+GRI SHL+ + +D+G
Sbjct: 76 TDRMDYLAAMNMNLGWALTVEKLLGHQISEKARHLRVIIAEMGRIASHLVGMGAYGLDLG 135
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
+P L+ F EREK++ +E A G+R+ +Y PGG D+P ++ + F +
Sbjct: 136 TFSPFLYAFREREKILDLFEEACGARLTYSYLTPGGATADLPKGWLQKCEEFLKQFEPVI 195
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLR------------ 232
+ LLT N IF +R IG + E A +G +G ++RGSG +DLR
Sbjct: 196 QEYHALLTTNSIFVKRTAAIGIMSAEMAIDYGCTGPVLRGSGVDYDLRRDGEERYTEMYD 255
Query: 233 ---------KSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGK 283
++ Y + GDC+ R+ VRM+E+ +S+ ++RQ + R
Sbjct: 256 GYAFEVIVSRNGHYPADHDYPPVPKEAVLGDCWHRFYVRMLEVVQSIDLVRQAIERYSTA 315
Query: 284 NKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVY 343
+ KL T +P GE Y E P+G+ G Y
Sbjct: 316 SG------------------------DWGQPIKLTT---KLPKGEAYLETECPRGQMGFY 348
Query: 344 LISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++SDG P+R + R+ + +L LC+G +ADV AI+GSLDIV GE+DR
Sbjct: 349 IVSDGNAIPWRVRARSSSFCNLSITADLCRGCLIADVPAIVGSLDIVMGEIDR 401
>gi|220930727|ref|YP_002507636.1| NADH-ubiquinone oxidoreductase chain 49kDa [Clostridium
cellulolyticum H10]
gi|220001055|gb|ACL77656.1| NADH-ubiquinone oxidoreductase chain 49kDa [Clostridium
cellulolyticum H10]
Length = 359
Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats.
Identities = 115/389 (29%), Positives = 180/389 (46%), Gaps = 32/389 (8%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
S I FGPQHP L + L ++ E + P IG +HRG EKL ETK F Q +R
Sbjct: 3 STVIPFGPQHPVLPEPLHIKLVMEDENIVEAIPAIGYVHRGLEKLTETKEFTQNTYVVER 62
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ + + AY +E+L+ IEI R + +RV+++E+ R+ SH L + A G +
Sbjct: 63 VCGICSVMHAMAYCQGIEELMNIEISDRAKFLRVIWAELHRMHSHFLWLGLVADAFGFES 122
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
+ + +REK+M E +GSR+ + GG +D+ E + I D L +
Sbjct: 123 LFMQTWRDREKVMDIMEETAGSRVVISCNTIGGTRRDLTKEQMAKIVSTVDEIKHDLEQL 182
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ N K R V +G + DA + G M R SG A DLR + Y Y +LDF+
Sbjct: 183 EAVFLNNYTVKHRLVGVGVLTKADAIEYSTVGPMARASGIATDLRTTG-YSAYGQLDFEP 241
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
GDCY R VR+ E+ +S+ +I+Q + ++ V P
Sbjct: 242 ITHNDGDCYARTYVRLKEVYQSIDLIKQAIAKIPEGEHVVPFKGF--------------- 286
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
P G+V + VE P+GE YL +G R ++R P +A++ +
Sbjct: 287 ----------------PPKGDVISRVEQPRGEVLYYLRGNGTKNLDRLRLRTPTFANIPS 330
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + G QLADV ++ ++D +R
Sbjct: 331 LLKMLPGSQLADVPMLILTIDPCISCTER 359
>gi|291438086|ref|ZP_06577476.1| NADH dehydrogenase I chain D [Streptomyces ghanaensis ATCC 14672]
gi|291340981|gb|EFE67937.1| NADH dehydrogenase I chain D [Streptomyces ghanaensis ATCC 14672]
Length = 383
Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats.
Identities = 137/394 (34%), Positives = 207/394 (52%), Gaps = 28/394 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+S +N GPQHP+ HGVLRL L LDGE + R +P IG +HRG EKL E + + Q +
Sbjct: 15 AESTDMVLNIGPQHPSTHGVLRLKLVLDGERIVRAEPVIGYMHRGAEKLFEARDYRQIIM 74
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+R D+++ + E LAVE++LG+E+P R +R L +E+ R+L+HL+ + + +++
Sbjct: 75 LANRHDWLSAFSNELGVVLAVERMLGMEVPERAVWLRTLLAELNRVLNHLMFLGSYPLEL 134
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP + F ERE+L E SG RMH + R GG+ +DIP S
Sbjct: 135 GGITPMFYAFHEREELQHVMEEVSGGRMHYMFNRVGGLKEDIPAGWTARARAAVADVRSR 194
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
++ DL+ GN IF+ R +G + +G SG + R SG +DLR+ +PY Y EL
Sbjct: 195 MDRFDDLVLGNEIFRGRTRGVGVLSPRAVHAYGVSGPLGRASGVDFDLRRDEPYLAYGEL 254
Query: 244 DF--DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ + GDC R+ + + S+ + C++RL + GPV+ PK++
Sbjct: 255 ADVLKVVTRREGDCLARFECLLEQTYNSLDLADACLDRL-AELPPGPVNQRLPKVL---- 309
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
P G YA E P G G YL+S G PYR K+R+
Sbjct: 310 ---------------------RAPEGHTYAWTENPLGINGYYLVSKGEKTPYRLKLRSAS 348
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
Y ++QA+ L G +AD+ AILGS+ V G++D
Sbjct: 349 YNNIQALTELLPGTLVADMVAILGSMFFVVGDID 382
>gi|331653912|ref|ZP_08354913.1| hydrogenase-4 component G [Escherichia coli M718]
gi|331048761|gb|EGI20837.1| hydrogenase-4 component G [Escherichia coli M718]
Length = 586
Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats.
Identities = 109/398 (27%), Positives = 172/398 (43%), Gaps = 34/398 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 189 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 248
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 249 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 308
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E +GSR GGV +DI E
Sbjct: 309 CHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 368
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A + G +IRGSG A DLR PY
Sbjct: 369 MRADVSELVEMLLATPNMEQRTQGIGILDRQIARDYSPVGPLIRGSGFARDLRFDHPYAD 428
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 429 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 473
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 474 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 516
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 517 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 554
>gi|224538210|ref|ZP_03678749.1| hypothetical protein BACCELL_03101 [Bacteroides cellulosilyticus
DSM 14838]
gi|224520178|gb|EEF89283.1| hypothetical protein BACCELL_03101 [Bacteroides cellulosilyticus
DSM 14838]
Length = 530
Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats.
Identities = 138/391 (35%), Positives = 210/391 (53%), Gaps = 29/391 (7%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ +N GPQHPA HGV+R + L+GE +E++D + G +HRG EK+ E+ T+ Q +
Sbjct: 169 DEEYVVNIGPQHPATHGVMRFRVSLEGETIEKIDANCGYIHRGIEKMCESLTYPQTLALT 228
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DRLDY+ HA +E+ +GIE+ R + IR + E+ RI SHLL + AMD+GA
Sbjct: 229 DRLDYLGAHQNRHALCACIEQAMGIEVSDRVKYIRTIMDELQRIDSHLLFYSCLAMDLGA 288
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
LT +GF +REK++ +E G R+ Y GGV D+ P + + + ++
Sbjct: 289 LTAFFYGFRDREKILDIFEETCGGRLIMNYNTIGGVQADLHPNFQKRVKEFIPYLRGIIH 348
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ ++ TGN I +QR +G + EDA +G +G R SG A D+RK PY Y ++DF
Sbjct: 349 EYHEVFTGNIIAQQRLKGVGVLSREDAIAFGATGGTGRASGWACDVRKRHPYGVYDKVDF 408
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ GD + RY+VRM E+ ES+ I+ Q ++ + GP I+
Sbjct: 409 KEIVYTEGDSWARYMVRMDEIMESMNILEQLIDNI----PEGPYQEKMKPII-------- 456
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
VP G+ Y AVE +GEFGV+L S G PYR R+ G +
Sbjct: 457 -----------------RVPEGQYYTAVEGSRGEFGVFLESHGDKTPYRLHFRSTGLPLV 499
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ +C+G ++AD+ AI G+LD V ++DR
Sbjct: 500 STVDTICRGAKIADLIAIGGTLDYVVPDIDR 530
>gi|326389235|ref|ZP_08210803.1| NADH-ubiquinone oxidoreductase chain 49kDa [Thermoanaerobacter
ethanolicus JW 200]
gi|325994598|gb|EGD53022.1| NADH-ubiquinone oxidoreductase chain 49kDa [Thermoanaerobacter
ethanolicus JW 200]
Length = 363
Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats.
Identities = 119/391 (30%), Positives = 187/391 (47%), Gaps = 32/391 (8%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
S TI FGPQHP + L L ++ E V P G +HRG E L++ K F Q V
Sbjct: 5 SEKSTIPFGPQHPVLPEPIHLKLVVEDEKVVEAYPAFGFVHRGLELLVKKKDFNQMVYVV 64
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
D + + AY AVE+L+G+++P R + +RV+++EI RI SHLL A G
Sbjct: 65 DHICGICSAMHGQAYCQAVEELIGVDVPERAKYLRVIWAEIHRIHSHLLWFGLLADAFGF 124
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ + REK+M E +G+R+ + GGV +DI E + + L
Sbjct: 125 ENLFMLSWRIREKIMDILEATAGNRVIISVNIVGGVRRDINSEQAKWLLNELKEVEEGLK 184
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
++ ++ N KQR V +G + ++A+ G G +RGSG D+R + Y Y +L+F
Sbjct: 185 ELDKIVRNNYTIKQRTVGVGVLSKDEAYKLGAVGPTLRGSGVPIDMRTTG-YAAYKDLNF 243
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ + K GD Y R +VR+ EM +S+ + RQ +++L V
Sbjct: 244 EPIVEKDGDTYARTIVRVKEMFQSIDLARQAISKLPEGEINVKVK--------------- 288
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
++P GEV + VE P+GE Y+ S GG R +IR P +A+L
Sbjct: 289 ----------------PNLPAGEVISRVEQPRGEVFYYIKSTGGKYLDRLRIRTPTFANL 332
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ + G LADV ++ ++D +R
Sbjct: 333 ASLLHMLPGSTLADVPVLVLTIDPCISCTER 363
>gi|189468078|ref|ZP_03016863.1| hypothetical protein BACINT_04472 [Bacteroides intestinalis DSM
17393]
gi|189436342|gb|EDV05327.1| hypothetical protein BACINT_04472 [Bacteroides intestinalis DSM
17393]
Length = 530
Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats.
Identities = 139/391 (35%), Positives = 212/391 (54%), Gaps = 29/391 (7%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ +N GPQHPA HGV+R + L+GE ++++D + G +HRG EK+ E+ T+ Q +
Sbjct: 169 DEEYVVNIGPQHPATHGVMRFRVSLEGETIDKIDANCGYIHRGIEKMCESLTYPQTLALT 228
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DRLDY+ HA + +E+ +GIE+ R + IR + E+ RI SHLL + AMD+GA
Sbjct: 229 DRLDYLGAHQNRHALCMCIEQAMGIEVSDRVKYIRTIMDELQRIDSHLLFYSCLAMDLGA 288
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
LT +GF +REK++ +E G R+ Y GGV D+ P + + + ++
Sbjct: 289 LTAFFYGFRDREKILDIFEETCGGRLIMNYNTIGGVQADLHPNFQKRVKEFIPYLRGIIH 348
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ + TGN I +QR +G + EDA +G +G R SG A D+RK QPY Y ++DF
Sbjct: 349 EYHQVFTGNIIAQQRLKGVGVLSREDAIAFGATGGTGRASGWACDVRKRQPYGVYDKVDF 408
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ GD + RY+VRM E+ ES+ I+ Q ++ + GP I+
Sbjct: 409 KEIVYTEGDSWARYMVRMDEIMESMNILEQLIDNI----PEGPYQEKMKPII-------- 456
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
VP G+ YAAVE +GEFGV+L S G PYR R+ G +
Sbjct: 457 -----------------RVPEGQYYAAVEGSRGEFGVFLESHGDKTPYRLHFRSTGLPLV 499
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ +C+G ++AD+ AI G+LD V ++DR
Sbjct: 500 STVDTICRGSKIADLIAIGGTLDYVVPDIDR 530
>gi|329957596|ref|ZP_08298071.1| respiratory-chain NADH dehydrogenase, subunit [Bacteroides clarus
YIT 12056]
gi|328522473|gb|EGF49582.1| respiratory-chain NADH dehydrogenase, subunit [Bacteroides clarus
YIT 12056]
Length = 533
Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats.
Identities = 146/391 (37%), Positives = 212/391 (54%), Gaps = 29/391 (7%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ +N GPQHPA HGV+R + L+GEI+E++D + G +HRG EK+ E+ T+ Q +
Sbjct: 172 DDEYVVNIGPQHPATHGVMRFRVSLEGEIIEKIDANCGYIHRGIEKMCESLTYPQTLALT 231
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DRLDY+ HA + +EK +GIE+ R Q IR + E+ RI SHLL + AMD+GA
Sbjct: 232 DRLDYLGAHQNRHALCMCIEKAMGIEVSERVQYIRTIMDELQRIDSHLLFYSCLAMDLGA 291
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
LT +GF +REK++ +E G R+ Y GGV DI P+ + + + L+
Sbjct: 292 LTAFFYGFRDREKILDIFEGTCGGRLIMNYNTIGGVQADIAPDFQKKVKEFIPYLRGILH 351
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ D+ TGN I +QR +G + EDA +G +G R SG A D+RK PY Y ++DF
Sbjct: 352 EYHDVFTGNIIAQQRLKGVGVLSREDAIAFGATGGTGRASGWACDVRKRMPYSVYDKVDF 411
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ GD + RYL+RM E+ ES+KII Q ++ + MK
Sbjct: 412 KEIVRTEGDSWARYLIRMDEIMESLKIIEQLIDNIPEGAYQ---------------EKMK 456
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
VP G YAAVE +GEFGV+L S G PYR R+ G +
Sbjct: 457 --------------PIIRVPEGTYYAAVEGSRGEFGVFLESHGDKTPYRLHFRSTGLPLV 502
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ +C+G ++AD+ AI G+LD V ++DR
Sbjct: 503 STIDTICRGAKIADLIAIGGTLDYVVPDIDR 533
>gi|284034318|ref|YP_003384249.1| NADH dehydrogenase (quinone) [Kribbella flavida DSM 17836]
gi|283813611|gb|ADB35450.1| NADH dehydrogenase (quinone) [Kribbella flavida DSM 17836]
Length = 401
Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats.
Identities = 137/397 (34%), Positives = 214/397 (53%), Gaps = 30/397 (7%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ + +N GPQHPA HGVLRL L LDGE + +P IG +HRG EKL E + + Q +
Sbjct: 30 EMPTTDMVLNIGPQHPATHGVLRLRLTLDGERIVGCEPIIGYMHRGAEKLFEVRDYRQII 89
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
+R D+++ + E LAVE+++G+E+P+R +R L +E+ R+L+HL+ + + ++
Sbjct: 90 VLANRHDWLSAFSNELGVVLAVERMMGLEVPVRAVWMRTLLAELNRVLNHLMFLGSYPLE 149
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA+TP + F ERE + E SG RMH + R GG+ +D+P + + S
Sbjct: 150 LGAITPVFYAFRERETIQAVMEELSGGRMHYMFNRVGGLKEDLPYGWLGRASAASAAVRS 209
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L DI +L+ GN IF+ R V +G + E +G SG + R SG DLR+ +PY Y E
Sbjct: 210 RLPDIENLVLGNEIFRARTVGVGRLSPELIAAYGVSGPIARASGVDADLRRDEPYLAYDE 269
Query: 243 LDFD----IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
L D + GDC+ R+ + +++ S+ +I C++RL GPV+ PKI+
Sbjct: 270 LARDGVLRVVTRSDGDCFGRFAALLEQVKVSLDLIDACLDRL-AAMPAGPVNVRLPKIL- 327
Query: 299 PKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
VP G+ YA E P G G YL+S G P+R K+R
Sbjct: 328 ------------------------KVPEGQTYAWTENPLGINGYYLVSRGDKTPWRLKLR 363
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ + ++ + + G +AD+ AILGS+ V G++D
Sbjct: 364 SASFNNISVLPEMLPGTIVADMIAILGSMFFVVGDID 400
>gi|317050797|ref|YP_004111913.1| NADH dehydrogenase (quinone) [Desulfurispirillum indicum S5]
gi|316945881|gb|ADU65357.1| NADH dehydrogenase (quinone) [Desulfurispirillum indicum S5]
Length = 384
Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats.
Identities = 143/392 (36%), Positives = 223/392 (56%), Gaps = 26/392 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+S T+ GP HP+ HGVL+++L+LDGE+V +P IG LHR E++ + + ++Q
Sbjct: 19 ESDLMTLAMGPHHPSTHGVLQIMLKLDGEVVVEAEPVIGFLHRSMERMGQERPWIQYTAA 78
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
+R+DY+A ++ E Y +A E++ G+E+P R Q +RVL E+ RI SHLL V T +D+G
Sbjct: 79 LNRVDYLATIHSEVPYCVAAERIAGLEVPERAQWLRVLMMELNRIHSHLLWVGTFLLDMG 138
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A T ++ ERE ++ E +G RM Y R GGV D+ P +E + SFP AL
Sbjct: 139 ATTIVMYSLRERELILDIMEEVTGMRMMNNYTRIGGVRYDMTPNSIEKTREFIKSFPQAL 198
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+D+ ++TGN I + R + G + + A +G G + R SG +DLR+ +P Y +LD
Sbjct: 199 SDMEAIITGNPIVRGRLIGKGLLTKQQAIDFGAMGPISRASGVDFDLRRDRPDFVYDKLD 258
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F +P+ + GD + RY+VRM EM+ES++++ QC++ + GPV PKI P
Sbjct: 259 FKVPVFQEGDNFARYMVRMEEMKESLRMVEQCLDMM----PEGPVKVEKPKIGPM----- 309
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
+ P GE YA VE+ +G G Y++SDG P R K+R +++
Sbjct: 310 -----------------WKAPAGEAYAEVESARGILGTYVVSDGSGNPMRTKLRGASFSN 352
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
L A G +++V +LG+ D+V E+DR
Sbjct: 353 LHAFAQTLVGINISEVVILLGTYDVVLPEIDR 384
>gi|271970334|ref|YP_003344530.1| NADH dehydrogenase (quinone) [Streptosporangium roseum DSM 43021]
gi|270513509|gb|ACZ91787.1| NADH dehydrogenase (quinone) [Streptosporangium roseum DSM 43021]
Length = 398
Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats.
Identities = 138/393 (35%), Positives = 206/393 (52%), Gaps = 26/393 (6%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ + +N GPQHP+ HGVLRL L LDGE + +P +G +HRG EKL E + + Q +
Sbjct: 31 ELATEDMVLNIGPQHPSTHGVLRLRLTLDGERISAAEPIVGYMHRGAEKLFEVRDYRQII 90
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
+R D+++ E LAVE++LG+E+P+R +R L +E+ R+LSHL+ + + ++
Sbjct: 91 VLANRHDWLSAFANELGVVLAVERMLGMEVPVRAVWMRTLLAELNRVLSHLMFLGSYPLE 150
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA+TP + F ERE L E SG RMH + R GG+ +D+P
Sbjct: 151 LGAITPVFYAFRERETLQAVMEEISGGRMHYMFNRVGGLKEDVPEGWSGRASRAVADVRR 210
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L DI +L+ GN IF R V +G + E +G SG + R SG DLR+ +PY Y E
Sbjct: 211 RLPDIENLVAGNEIFLARTVGVGVLDRETIMQYGVSGPIARASGVDIDLRRDEPYLAYGE 270
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
L + GDC R+ V + +++ S+ + C+ RL GPV+ PK++
Sbjct: 271 LPVRVVTRSAGDCRARFEVLLEQVKVSLDLADACLERLRE-LPQGPVNQRLPKVL----- 324
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
VP G YA E P G G YL+S G P+R K+R+ Y
Sbjct: 325 --------------------KVPEGHTYAWTENPLGINGYYLVSRGEKTPWRMKLRSASY 364
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
++Q + + G LAD+ AILGS+ V G++D
Sbjct: 365 NNVQVLREMLPGQLLADMVAILGSMFFVVGDID 397
>gi|320010048|gb|ADW04898.1| NADH dehydrogenase (quinone) [Streptomyces flavogriseus ATCC 33331]
Length = 380
Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats.
Identities = 130/394 (32%), Positives = 204/394 (51%), Gaps = 28/394 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+S +N GPQHP+ HGVLRL L LDGE +++ +P IG +HRG EKL E + + Q +
Sbjct: 12 AESTDMVLNIGPQHPSTHGVLRLRLVLDGERIQQAEPVIGYMHRGAEKLFEARDYRQIIM 71
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+R D+++ + E +AVE++LG+E+P R R L +E+ R+L+HL+ + + +++
Sbjct: 72 LANRHDWLSAFSNELGVVMAVERMLGMEVPERAVWTRTLLAELNRVLNHLMFLGSYPLEL 131
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP F ERE+L E SG RMH + R GG+ +D+P + S S
Sbjct: 132 GGITPMFHAFREREELQAAMEEVSGGRMHYMFNRVGGLKEDLPAGWLGRARDAVASVRSR 191
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE- 242
++ L+ GN IF+ R +G + +G SG + R SG +DLR+ +PY Y E
Sbjct: 192 MDVYDRLVLGNEIFRGRTRGVGVLSAGAVHAYGVSGPIARASGVDFDLRRDEPYLAYGEL 251
Query: 243 -LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ GDC R+ + + ++ + C++R+ GP++ PK++
Sbjct: 252 QDTLRVVTRTEGDCLARFECLLEQTHNALDLADACLDRI-ADLPPGPINQRLPKVL---- 306
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
P G YA E P G G YL+S G PYR K+R+
Sbjct: 307 ---------------------KAPEGHTYAWTENPLGINGYYLVSTGEKTPYRLKLRSAS 345
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ ++QA+ L G +AD+ AILGSL V G++D
Sbjct: 346 FNNIQALTELLPGTLVADMVAILGSLFFVVGDID 379
>gi|300897632|ref|ZP_07116037.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
198-1]
gi|300358632|gb|EFJ74502.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
198-1]
Length = 571
Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats.
Identities = 109/398 (27%), Positives = 172/398 (43%), Gaps = 34/398 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E +GSR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A + G +IRGSG A DLR PY
Sbjct: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQIARDYSPVGPLIRGSGFARDLRFDHPYAD 413
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 414 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 458
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 459 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 501
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 502 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 539
>gi|82544936|ref|YP_408883.1| hydrogenase 4 subunit [Shigella boydii Sb227]
gi|81246347|gb|ABB67055.1| hydrogenase 4 subunit [Shigella boydii Sb227]
gi|320185184|gb|EFW59964.1| Hydrogenase-4 component G [Shigella flexneri CDC 796-83]
gi|332092804|gb|EGI97873.1| hydrogenase-4 component G [Shigella boydii 3594-74]
Length = 571
Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats.
Identities = 109/398 (27%), Positives = 172/398 (43%), Gaps = 34/398 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E +GSR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A + G +IRGSG A DLR PY
Sbjct: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQIARDYSPVGPLIRGSGFARDLRFDHPYAD 413
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 414 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 458
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 459 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 501
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 502 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 539
>gi|167764931|ref|ZP_02437052.1| hypothetical protein BACSTE_03323 [Bacteroides stercoris ATCC
43183]
gi|167697600|gb|EDS14179.1| hypothetical protein BACSTE_03323 [Bacteroides stercoris ATCC
43183]
Length = 536
Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats.
Identities = 145/391 (37%), Positives = 212/391 (54%), Gaps = 29/391 (7%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ +N GPQHPA HGV+R + L+GEI++++D + G +HRG EK+ E+ T+ Q +
Sbjct: 175 DDEYVVNIGPQHPATHGVMRFRVSLEGEIIKKIDANCGYIHRGIEKMCESLTYPQTLALT 234
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DRLDY+ HA + +EK +GIE+ R Q IR + E+ RI SHLL + AMD+GA
Sbjct: 235 DRLDYLGAHQNRHALCMCIEKAMGIEVSERVQYIRTIMDELQRIDSHLLFYSCLAMDLGA 294
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
LT +GF +REK++ +E G R+ Y GGV DI P+ + + + L+
Sbjct: 295 LTAFFYGFRDREKILDIFEGTCGGRLIMNYNTIGGVQADIAPDFQKKVKEFIPYLRGILH 354
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ D+ TGN I +QR +G + EDA +G +G R SG A D+RK PY Y ++DF
Sbjct: 355 EYHDVFTGNIIAQQRLKGVGVLSREDAIAFGATGGTGRASGWACDVRKRMPYGVYDKVDF 414
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ GD + RYL+RM E+ ES+KII Q ++ + MK
Sbjct: 415 KEIVRTEGDSWARYLIRMDEIMESLKIIEQLIDNIPEGAYQ---------------EKMK 459
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
VP G YAAVE +GEFGV+L S G PYR R+ G +
Sbjct: 460 --------------PIIRVPEGTYYAAVEGSRGEFGVFLESHGDKTPYRLHFRSTGLPLV 505
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ +C+G ++AD+ AI G+LD V ++DR
Sbjct: 506 STVDTICRGAKIADLIAIGGTLDYVVPDIDR 536
>gi|331673942|ref|ZP_08374705.1| hydrogenase-4 component G [Escherichia coli TA280]
gi|331069215|gb|EGI40607.1| hydrogenase-4 component G [Escherichia coli TA280]
Length = 586
Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats.
Identities = 109/398 (27%), Positives = 172/398 (43%), Gaps = 34/398 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 189 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 248
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 249 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 308
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E +GSR GGV +DI E
Sbjct: 309 CHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 368
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A + G +IRGSG A DLR PY
Sbjct: 369 MRADVSELVEMLLATPNMEQRTQGIGILDRQIARDYSPVGPLIRGSGFARDLRFDHPYAD 428
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 429 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 473
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 474 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 516
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 517 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 554
>gi|293410882|ref|ZP_06654458.1| hydrogenase-4 component G [Escherichia coli B354]
gi|291471350|gb|EFF13834.1| hydrogenase-4 component G [Escherichia coli B354]
Length = 577
Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats.
Identities = 109/398 (27%), Positives = 172/398 (43%), Gaps = 34/398 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 180 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 239
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 240 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 299
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E +GSR GGV +DI E
Sbjct: 300 CHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 359
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A + G +IRGSG A DLR PY
Sbjct: 360 MRADVSELVEMLLATPNMEQRTQGIGILDRQIARDYSPVGPLIRGSGFARDLRFDHPYAD 419
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 420 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 464
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 465 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 507
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 508 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 545
>gi|323941254|gb|EGB37439.1| respiratory-chain NADH dehydrogenase [Escherichia coli E482]
Length = 571
Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats.
Identities = 109/398 (27%), Positives = 172/398 (43%), Gaps = 34/398 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGNSDAQVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E +GSR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A + G +IRGSG A DLR PY
Sbjct: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQIARDYSPVGPLIRGSGFARDLRFDHPYAD 413
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 414 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 458
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 459 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 501
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 502 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 539
>gi|291283707|ref|YP_003500525.1| Hydrogenase-4, G subunit [Escherichia coli O55:H7 str. CB9615]
gi|290763580|gb|ADD57541.1| Hydrogenase-4, G subunit [Escherichia coli O55:H7 str. CB9615]
Length = 571
Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats.
Identities = 109/398 (27%), Positives = 173/398 (43%), Gaps = 34/398 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGNSGARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E +GSR + GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYSLNLIGGVRRDILKEQRLQTLKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A + G +IRGSG A DLR PY
Sbjct: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQIARDYSPVGPLIRGSGFARDLRFDHPYAD 413
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 414 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 458
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 459 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 501
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 502 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 539
>gi|331664044|ref|ZP_08364954.1| hydrogenase-4 component G [Escherichia coli TA143]
gi|331059843|gb|EGI31820.1| hydrogenase-4 component G [Escherichia coli TA143]
Length = 571
Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats.
Identities = 109/398 (27%), Positives = 172/398 (43%), Gaps = 34/398 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E +GSR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A + G +IRGSG A DLR PY
Sbjct: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQIARDYSPVGPLIRGSGFARDLRFDHPYAD 413
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 414 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 458
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 459 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 501
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 502 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 539
>gi|293415750|ref|ZP_06658393.1| hyfG hydrogenase 4 subunit [Escherichia coli B185]
gi|291433398|gb|EFF06377.1| hyfG hydrogenase 4 subunit [Escherichia coli B185]
Length = 571
Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats.
Identities = 109/398 (27%), Positives = 172/398 (43%), Gaps = 34/398 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGDSDARVIPIGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E +GSR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A + G +IRGSG A DLR PY
Sbjct: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQIARDYSPVGPLIRGSGFARDLRFDHPYAD 413
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 414 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 458
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 459 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 501
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 502 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 539
>gi|170680711|ref|YP_001744670.1| hydrogenase-4, G subunit [Escherichia coli SMS-3-5]
gi|300940271|ref|ZP_07154868.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
21-1]
gi|301024709|ref|ZP_07188352.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
69-1]
gi|170518429|gb|ACB16607.1| hydrogenase-4, G subunit [Escherichia coli SMS-3-5]
gi|300396440|gb|EFJ79978.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
69-1]
gi|300454912|gb|EFK18405.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
21-1]
Length = 571
Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats.
Identities = 109/398 (27%), Positives = 172/398 (43%), Gaps = 34/398 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E +GSR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A + G +IRGSG A DLR PY
Sbjct: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQIARDYSPVGPLIRGSGFARDLRFDHPYAD 413
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 414 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 458
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 459 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 501
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 502 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 539
>gi|74313013|ref|YP_311432.1| hydrogenase 4 subunit [Shigella sonnei Ss046]
gi|73856490|gb|AAZ89197.1| hydrogenase 4 subunit [Shigella sonnei Ss046]
Length = 571
Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats.
Identities = 109/398 (27%), Positives = 172/398 (43%), Gaps = 34/398 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGNSDARVIPIGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E +GSR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A + G +IRGSG A DLR PY
Sbjct: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQIARDYSPVGPLIRGSGFARDLRFDHPYAD 413
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 414 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 458
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 459 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 501
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 502 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 539
>gi|312973275|ref|ZP_07787447.1| hydrogenase-4 component G [Escherichia coli 1827-70]
gi|310331870|gb|EFP99105.1| hydrogenase-4 component G [Escherichia coli 1827-70]
Length = 571
Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats.
Identities = 109/398 (27%), Positives = 172/398 (43%), Gaps = 34/398 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGNSDAQVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E +GSR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A + G +IRGSG A DLR PY
Sbjct: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQIARDYSPVGPLIRGSGFARDLRFDHPYAD 413
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 414 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPNTP--------------- 458
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 459 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 501
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 502 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 539
>gi|194432176|ref|ZP_03064465.1| hydrogenase-4, G subunit [Shigella dysenteriae 1012]
gi|194419705|gb|EDX35785.1| hydrogenase-4, G subunit [Shigella dysenteriae 1012]
gi|332089806|gb|EGI94907.1| hydrogenase-4 component G [Shigella dysenteriae 155-74]
Length = 571
Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats.
Identities = 109/398 (27%), Positives = 172/398 (43%), Gaps = 34/398 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E +GSR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A + G +IRGSG A DLR PY
Sbjct: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQIARDYSPVGPLIRGSGFARDLRFDPPYAD 413
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 414 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 458
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 459 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 501
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 502 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 539
>gi|293405923|ref|ZP_06649915.1| hydrogenase-4 component G [Escherichia coli FVEC1412]
gi|298381671|ref|ZP_06991270.1| hydrogenase-4 component G [Escherichia coli FVEC1302]
gi|291428131|gb|EFF01158.1| hydrogenase-4 component G [Escherichia coli FVEC1412]
gi|298279113|gb|EFI20627.1| hydrogenase-4 component G [Escherichia coli FVEC1302]
Length = 586
Score = 333 bits (853), Expect = 4e-89, Method: Composition-based stats.
Identities = 109/398 (27%), Positives = 172/398 (43%), Gaps = 34/398 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 189 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 248
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 249 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 308
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E +GSR GGV +DI E
Sbjct: 309 CHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 368
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A + G +IRGSG A DLR PY
Sbjct: 369 MRADVSELVEMLLATPNMEQRTQGIGILDRQIARDYSPVGPLIRGSGFARDLRFDHPYAD 428
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 429 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 473
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 474 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 516
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 517 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 554
>gi|309702765|emb|CBJ02096.1| hydrogenase-4 component G [Escherichia coli ETEC H10407]
gi|323936379|gb|EGB32669.1| respiratory-chain NADH dehydrogenase [Escherichia coli E1520]
Length = 571
Score = 333 bits (853), Expect = 4e-89, Method: Composition-based stats.
Identities = 109/398 (27%), Positives = 172/398 (43%), Gaps = 34/398 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGNSDAQVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E +GSR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A + G +IRGSG A DLR PY
Sbjct: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQIARDYSPVGPLIRGSGFARDLRFDHPYAD 413
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 414 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 458
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 459 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 501
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 502 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 539
>gi|323169074|gb|EFZ54751.1| hydrogenase-4 component G [Shigella sonnei 53G]
Length = 571
Score = 333 bits (853), Expect = 4e-89, Method: Composition-based stats.
Identities = 109/398 (27%), Positives = 172/398 (43%), Gaps = 34/398 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGNSDARVIPIGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E +GSR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A + G +IRGSG A DLR PY
Sbjct: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQIARDYSPVGPLIRGSGFARDLRFDHPYAD 413
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 414 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 458
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 459 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 501
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 502 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 539
>gi|237719851|ref|ZP_04550332.1| NADH dehydrogenase I [Bacteroides sp. 2_2_4]
gi|229451120|gb|EEO56911.1| NADH dehydrogenase I [Bacteroides sp. 2_2_4]
Length = 530
Score = 333 bits (853), Expect = 4e-89, Method: Composition-based stats.
Identities = 146/390 (37%), Positives = 213/390 (54%), Gaps = 29/390 (7%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+ +N GPQHPA HGV+R + L+GEI+ ++D + G +HRG EK+ E+ T+ Q + D
Sbjct: 170 EEYVVNIGPQHPATHGVMRFRVSLEGEIIRKIDANCGYIHRGIEKMNESLTYPQTLALTD 229
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDY+ HA + +EK +GIE+ R Q IR + E+ RI SHLL + AMD+GAL
Sbjct: 230 RLDYLGAHQNRHALCMCIEKAMGIEVSERVQYIRTIMDELQRIDSHLLFYSCLAMDLGAL 289
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
T +GF +REK++ +E G R+ Y GGV D+ P V+ + + +++
Sbjct: 290 TAFFYGFRDREKILDIFEETCGGRLIMNYNTIGGVQADLHPNFVKRVKEFIPYMRGIIHE 349
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
D+ TGN I + R +G + EDA +G +G R SG A D+RK PY Y ++DF
Sbjct: 350 YHDIFTGNIIAQSRMKGVGVLSREDAISFGCTGGTGRASGWACDVRKRMPYGVYDKVDFK 409
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ GDC+ RYLVRM E+ ES+ II Q ++ + GP I+
Sbjct: 410 EIVYTEGDCFARYLVRMDEIMESLNIIEQLIDNI----PEGPYQEKMKPII--------- 456
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
VP G YAAVE +GEFGV+L S G PYR RA G +
Sbjct: 457 ----------------RVPEGSYYAAVEGSRGEFGVFLESQGDKTPYRLHYRATGLPLVA 500
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A++ +C+G ++AD+ AI G++D V ++DR
Sbjct: 501 AIDTICRGTKIADLIAIGGTIDYVVPDIDR 530
>gi|169247667|gb|ACA51666.1| EchE [Thermoanaerobacterium saccharolyticum]
Length = 360
Score = 333 bits (853), Expect = 4e-89, Method: Composition-based stats.
Identities = 123/391 (31%), Positives = 189/391 (48%), Gaps = 32/391 (8%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
S TI FGPQHP + L L ++ E V P G +HRG E L + K F Q V
Sbjct: 2 SDKSTIPFGPQHPVLPEPIHLKLVVEDEKVVEAYPAFGFVHRGLETLAQKKDFNQMVYVV 61
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
+R+ + Y A+E+L+G+++P+R + +R +++E+ RI SHLL + A G
Sbjct: 62 ERVCGICSCMHGQDYCEAIEELMGVQVPVRAEYLRTIWAELHRIHSHLLWLGLFADAFGF 121
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ ++ REK+M E SG+R+ + GGV +DI E + I D L
Sbjct: 122 ENLFMQTWKIREKIMDILEATSGNRVIISVNIVGGVRKDINSEQAKWILKELDDVERQLK 181
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
DI+D++ N KQR V IG + E+A+ G +G M +GSG DLR + Y Y LDF
Sbjct: 182 DINDVVMNNYTVKQRTVGIGVLTKEEAYELGATGPMAKGSGVDLDLRTTG-YAAYKYLDF 240
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ + K GD Y R LVRM E+ +S+ +IRQ + ++ PV +
Sbjct: 241 EPIVEKAGDSYARNLVRMREIFQSIDLIRQALGKMPEGEISVPVKGN------------- 287
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
P GEV + +E +GE Y+ S+G R +IR P +A++
Sbjct: 288 ------------------PPAGEVISRLEQSRGEVVYYIKSNGTKFLDRLRIRTPTFANI 329
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A+ + G L DV ++ ++D +R
Sbjct: 330 PALLKILPGSHLQDVPVLILTIDPCISCTER 360
>gi|218886617|ref|YP_002435938.1| NADH-ubiquinone oxidoreductase chain 49kDa [Desulfovibrio vulgaris
str. 'Miyazaki F']
gi|193479937|gb|ACF17990.1| EchE [Desulfovibrio vulgaris str. 'Miyazaki F']
gi|218757571|gb|ACL08470.1| NADH-ubiquinone oxidoreductase chain 49kDa [Desulfovibrio vulgaris
str. 'Miyazaki F']
Length = 358
Score = 333 bits (853), Expect = 4e-89, Method: Composition-based stats.
Identities = 110/389 (28%), Positives = 172/389 (44%), Gaps = 33/389 (8%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
I FGPQHP L L L ++ E + P +G +HRG E L + + Q V +R
Sbjct: 3 RTIIPFGPQHPVLPEPLHLKLVVEDETIVEAIPALGYVHRGLETLASIRDYNQMVYIVER 62
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ + Y +E ++ +E+P R + +RV++SE+ RI SHLL + A G +
Sbjct: 63 VCGICSCIHAMCYCQGLETMMNVEVPSRAKYLRVIWSELHRIHSHLLWLGLFADGFGFES 122
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
+ ++ RE++M E +G+R+ + GGV +D+ I D L +
Sbjct: 123 LFMQFWKIRERVMDINEATAGNRVVISVNVVGGVRRDLDKTQQRWILDELDKLEKELRQL 182
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ + K+R V +G + E A G G +RGSG A D R+ Y + ELDF+
Sbjct: 183 MKTMLDDYTVKKRTVGVGVLTAEQAIQLGAVGPTLRGSGVAQDARQLG-YAAFDELDFEP 241
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
GD + R VR ME +S+ I+RQ ++RL
Sbjct: 242 VTSPEGDSWARSKVRFMETLQSMDIVRQAISRLPDS------------------------ 277
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
+L + P GEV VE P+GE YL +G R +IR P +A++
Sbjct: 278 --------ELAAKVPGKPTGEVVCRVEQPRGELLYYLKGNGSKNMERVRIRTPTFANIPP 329
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + G QLADV ++D +R
Sbjct: 330 LLAMLPGAQLADVPIAALTIDPCISCTER 358
>gi|197121685|ref|YP_002133636.1| NADH dehydrogenase (quinone) [Anaeromyxobacter sp. K]
gi|218534384|sp|B4UIA2|NUOD1_ANASK RecName: Full=NADH-quinone oxidoreductase subunit D 1; AltName:
Full=NADH dehydrogenase I subunit D 1; AltName:
Full=NDH-1 subunit D 1
gi|196171534|gb|ACG72507.1| NADH dehydrogenase (quinone) [Anaeromyxobacter sp. K]
Length = 379
Score = 333 bits (853), Expect = 4e-89, Method: Composition-based stats.
Identities = 145/399 (36%), Positives = 211/399 (52%), Gaps = 34/399 (8%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ +NFGPQHP+ HGV+ ++E DGE+++R P +G LHR EK+ E + +
Sbjct: 10 DRQNEEMILNFGPQHPSTHGVINFLVETDGEVLKRATPDVGYLHRSIEKIGEMVGYPGFM 69
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR+DYVA M YA+AVE+LL IE+P R Q +R + E+ RI SHL++V T MD
Sbjct: 70 PYTDRVDYVAAMFANEGYAIAVERLLKIEVPQRAQWLRAISCELCRIASHLVSVGTMVMD 129
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA TP L G ERE + E G+R+ Y R GGV D+P + + + D F
Sbjct: 130 IGAFTPMLHGIRERETINDLLEALCGARLTYNYHRIGGVAFDLPEGWRDKVLHFLDHFDK 189
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L + L++ N I+ +R N+ + A +G G +RGSG WD+R+ PY Y
Sbjct: 190 FLAEFDRLISFNEIYVKRLANVAVIPGPMAINYGLVGPNLRGSGVDWDVRRDLPYGAYPN 249
Query: 243 LDFDIPIGK-----HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIV 297
FD+P+GK GD +DRY VR +EM ES KI+RQ ++ L V +
Sbjct: 250 FKFDVPVGKGFFGTSGDSFDRYYVRCLEMAESSKIVRQALDSLPEGEITAKVPRN----- 304
Query: 298 PPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKI 357
GE VE+ +GE Y+ISDG NK YR +
Sbjct: 305 ------------------------IKPEAGEAIGRVESARGELAYYVISDGTNKAYRVRA 340
Query: 358 RAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
R + + +E + +G +AD+ A++ SLD+V E+DR
Sbjct: 341 RTGSFTAMCIIEDISRGLMVADLVALISSLDVVAPEIDR 379
>gi|312134933|ref|YP_004002271.1| NADH-ubiquinone oxidoreductase chain 49kda [Caldicellulosiruptor
owensensis OL]
gi|311774984|gb|ADQ04471.1| NADH-ubiquinone oxidoreductase chain 49kDa [Caldicellulosiruptor
owensensis OL]
Length = 359
Score = 333 bits (853), Expect = 4e-89, Method: Composition-based stats.
Identities = 115/391 (29%), Positives = 179/391 (45%), Gaps = 33/391 (8%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ + FGPQHP L+L L L+ E V P IG +HRG EKL E K Q +
Sbjct: 2 GKRTIVPFGPQHPVLPEPLQLRLVLEDEKVVEAIPAIGYVHRGLEKLAEEKDINQNIYVV 61
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
+R+ + Q AY +E+L+GIE+P R + +RV+++E+ R+ SH L + A G
Sbjct: 62 ERVCGICSFQQALAYCQGIEELMGIEVPDRAKYLRVIWAELHRLHSHHLWLGLLADAFGF 121
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ + + RE +M E +GSR+ + GGV +DI + + I L
Sbjct: 122 ESLFMQCWRNRELVMDLMEATAGSRVIISTNIIGGVRRDIDLDKQKFILNNLAKLEEELK 181
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
I + K+R V +G + ++A+ G G M R SG DLR Y Y EL F
Sbjct: 182 KIEGSFLNDYTVKKRLVGVGVLTKQEAYELGCVGPMARASGIKMDLRTLG-YAAYGELYF 240
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ + GDCY R VR+ E +S+ +IRQ + ++ PV
Sbjct: 241 EPVVENDGDCYARLKVRLRECYQSIDLIRQAIFKMPEGEISTPVKGF------------- 287
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
P GEV + VE P+GE Y+ ++G R +IR P +A++
Sbjct: 288 -------------------PNGEVISRVEQPRGEDVYYIKANGTKNLERLRIRTPTFANI 328
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A+ + +G ADV ++ ++D +R
Sbjct: 329 PALIKMLQGVDFADVPMLVLTIDPCISCTER 359
>gi|239929759|ref|ZP_04686712.1| NADH dehydrogenase I chain D [Streptomyces ghanaensis ATCC 14672]
Length = 376
Score = 333 bits (853), Expect = 5e-89, Method: Composition-based stats.
Identities = 137/394 (34%), Positives = 207/394 (52%), Gaps = 28/394 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+S +N GPQHP+ HGVLRL L LDGE + R +P IG +HRG EKL E + + Q +
Sbjct: 8 AESTDMVLNIGPQHPSTHGVLRLKLVLDGERIVRAEPVIGYMHRGAEKLFEARDYRQIIM 67
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+R D+++ + E LAVE++LG+E+P R +R L +E+ R+L+HL+ + + +++
Sbjct: 68 LANRHDWLSAFSNELGVVLAVERMLGMEVPERAVWLRTLLAELNRVLNHLMFLGSYPLEL 127
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP + F ERE+L E SG RMH + R GG+ +DIP S
Sbjct: 128 GGITPMFYAFHEREELQHVMEEVSGGRMHYMFNRVGGLKEDIPAGWTARARAAVADVRSR 187
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
++ DL+ GN IF+ R +G + +G SG + R SG +DLR+ +PY Y EL
Sbjct: 188 MDRFDDLVLGNEIFRGRTRGVGVLSPRAVHAYGVSGPLGRASGVDFDLRRDEPYLAYGEL 247
Query: 244 DF--DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ + GDC R+ + + S+ + C++RL + GPV+ PK++
Sbjct: 248 ADVLKVVTRREGDCLARFECLLEQTYNSLDLADACLDRL-AELPPGPVNQRLPKVL---- 302
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
P G YA E P G G YL+S G PYR K+R+
Sbjct: 303 ---------------------RAPEGHTYAWTENPLGINGYYLVSKGEKTPYRLKLRSAS 341
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
Y ++QA+ L G +AD+ AILGS+ V G++D
Sbjct: 342 YNNIQALTELLPGTLVADMVAILGSMFFVVGDID 375
>gi|323977335|gb|EGB72421.1| respiratory-chain NADH dehydrogenase [Escherichia coli TW10509]
Length = 571
Score = 332 bits (852), Expect = 5e-89, Method: Composition-based stats.
Identities = 109/398 (27%), Positives = 172/398 (43%), Gaps = 34/398 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E +GSR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGGVRRDILKEQRLQTMKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A + G +IRGSG A DLR PY
Sbjct: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQIARDYSPVGPLIRGSGFARDLRFDHPYAD 413
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 414 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 458
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 459 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 501
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 502 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 539
>gi|293446841|ref|ZP_06663263.1| hyfG [Escherichia coli B088]
gi|291323671|gb|EFE63099.1| hyfG [Escherichia coli B088]
Length = 577
Score = 332 bits (852), Expect = 5e-89, Method: Composition-based stats.
Identities = 109/398 (27%), Positives = 172/398 (43%), Gaps = 34/398 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 180 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 239
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 240 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 299
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E +GSR GGV +DI E
Sbjct: 300 CHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 359
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A + G +IRGSG A DLR PY
Sbjct: 360 MRADVSELVEMLLAMPNMEQRTQGIGILDRQIARDYSPVGPLIRGSGFARDLRFDHPYAD 419
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 420 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 464
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 465 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 507
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 508 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 545
>gi|323706315|ref|ZP_08117881.1| NADH-ubiquinone oxidoreductase chain 49kDa [Thermoanaerobacterium
xylanolyticum LX-11]
gi|323534367|gb|EGB24152.1| NADH-ubiquinone oxidoreductase chain 49kDa [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 360
Score = 332 bits (852), Expect = 5e-89, Method: Composition-based stats.
Identities = 122/391 (31%), Positives = 189/391 (48%), Gaps = 32/391 (8%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
S TI FGPQHP + L L ++ E V P G +HRG E L + K F Q V
Sbjct: 2 SDKSTIPFGPQHPVLPEPIHLKLVVEDEKVVEAYPAFGFVHRGLETLAQKKDFNQMVYVV 61
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
+R+ + Y A+E+L+G+++P+R + +R +++E+ RI SHLL + A G
Sbjct: 62 ERVCGICSCMHGEDYCEAIEELMGVQVPVRAEYLRTIWAELHRIHSHLLWLGLFADAFGF 121
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ ++ REK+M E SG+R+ + GGV +DI E + I D L
Sbjct: 122 ENLFMQTWKIREKIMDILEATSGNRVIISVNIVGGVRKDINSEQAKWILKELDEVERQLK 181
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
DI+D++ N KQR V IG + E+A+ G +G M +GSG DLR + Y Y LDF
Sbjct: 182 DINDVVMNNYTVKQRTVGIGVLTKEEAYELGATGPMAKGSGVDLDLRTTG-YAAYKYLDF 240
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ + K GD Y R LVRM E+ +S+ ++RQ + ++ PV +
Sbjct: 241 EPIVEKDGDSYARNLVRMREIFQSIDLVRQALGKMPEGEISVPVKGN------------- 287
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
P GEV + +E +GE Y+ S+G R +IR P +A++
Sbjct: 288 ------------------PPAGEVISRLEQSRGEVVYYIKSNGTKFLDRLRIRTPTFANI 329
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A+ + G L DV ++ ++D +R
Sbjct: 330 PALLKILPGSHLQDVPVLILTIDPCISCTER 360
>gi|332826699|gb|EGJ99521.1| hypothetical protein HMPREF9455_04117 [Dysgonomonas gadei ATCC
BAA-286]
Length = 542
Score = 332 bits (852), Expect = 5e-89, Method: Composition-based stats.
Identities = 144/392 (36%), Positives = 208/392 (53%), Gaps = 29/392 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ + IN GPQHP+ HGV+ + L+GE+V+++D H G +HRG EK+ E T+ Q +
Sbjct: 180 EETDYIINIGPQHPSTHGVMHFRVALEGEMVKKIDVHSGYIHRGIEKMCENMTYPQILHL 239
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDY++ H + VEK GIE+P R Q IR + E+ RI SHL+ T MD+G
Sbjct: 240 TDRLDYLSANINRHGLCMCVEKASGIEVPERAQYIRTIMDELNRIDSHLVAWATMCMDLG 299
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
+ T ++G ERE+++ +E+ SG R+ Y GGV DI PE +D+ + L
Sbjct: 300 STTAFIYGMREREEILKIFEQTSGGRLIINYNVIGGVMFDIYPEFQKDVKAFIPLMRKRL 359
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ L TGN I R IG + EDA + +G RGSG A D+RK PY Y +++
Sbjct: 360 KEYDRLFTGNVIALGRMKGIGLLSKEDAISYAVTGPAGRGSGFASDIRKHVPYALYDKVE 419
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F I + GD + RYL R+ E+ ES+KII Q V+ + G A I+
Sbjct: 420 FTEIIREEGDAFARYLNRLDEIEESLKIIEQLVDNIPD----GEFLAKTKAII------- 468
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
+P GE Y VEA +GEFGV++ S G PYR K R+P A
Sbjct: 469 ------------------KLPEGEFYQRVEAGRGEFGVFIESRGDKVPYRLKFRSPSMAA 510
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ M +C+ +++D I GS+D V ++DR
Sbjct: 511 VSVMPLICEDEKISDFIGIGGSMDYVIPDIDR 542
>gi|20806656|ref|NP_621827.1| NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Thermoanaerobacter
tengcongensis MB4]
gi|20515105|gb|AAM23431.1| NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Thermoanaerobacter
tengcongensis MB4]
Length = 360
Score = 332 bits (852), Expect = 5e-89, Method: Composition-based stats.
Identities = 122/391 (31%), Positives = 183/391 (46%), Gaps = 32/391 (8%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
S TI FGPQHP + L L ++ E V P G +HRG E L++ + F Q V
Sbjct: 2 SEKSTIPFGPQHPVLPEPIHLKLIVEDEKVVEAYPAFGYVHRGLELLVKKRDFNQMVYVV 61
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
D + + Y AVEKL+GI++P R + +RV+++EI RI SHLL A G
Sbjct: 62 DHICGICSAIHGETYCQAVEKLIGIDVPERAKFLRVIWAEIHRIHSHLLWFGLLADAFGF 121
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ + REK+M E +G+R+ + GGV +DI E + + L
Sbjct: 122 ENLFMLSWRIREKVMDILEATAGNRVVISVNIVGGVRRDIDSEQAKWVLAQLKEVEEGLK 181
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+I ++ N K+R V IG + E+A+ G G +RGSG D R Y Y LDF
Sbjct: 182 EIEKIVRDNYTLKKRTVGIGVLSKEEAYMLGAVGPTLRGSGVPIDTRTLG-YAAYKYLDF 240
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ + K GD Y R LVR+ EM +S+ ++RQ ++++ V
Sbjct: 241 EPVVEKDGDTYARTLVRLREMFQSIDLVRQAISKMPEGEINVKVK--------------- 285
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
++P GEV E P+GE Y+ S+GG R +IR P +A+L
Sbjct: 286 ----------------PNLPAGEVIERAEQPRGEVFYYIKSNGGKYLDRLRIRTPTFANL 329
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A+ + G LADV ++ ++D +R
Sbjct: 330 AALLHMLPGCTLADVPVLVLTIDPCISCTER 360
>gi|209919963|ref|YP_002294047.1| hydrogenase 4 membrane subunit [Escherichia coli SE11]
gi|307312519|ref|ZP_07592152.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Escherichia coli W]
gi|309794469|ref|ZP_07688892.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
145-7]
gi|209913222|dbj|BAG78296.1| hydrogenase 4 membrane subunit [Escherichia coli SE11]
gi|306907442|gb|EFN37946.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Escherichia coli W]
gi|308121925|gb|EFO59187.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
145-7]
gi|315061806|gb|ADT76133.1| hydrogenase 4, subunit [Escherichia coli W]
gi|320200047|gb|EFW74636.1| Hydrogenase-4 component G [Escherichia coli EC4100B]
gi|323184456|gb|EFZ69831.1| hydrogenase-4 component G [Escherichia coli 1357]
gi|323377613|gb|ADX49881.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Escherichia coli
KO11]
gi|324020086|gb|EGB89305.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
117-3]
Length = 571
Score = 332 bits (852), Expect = 5e-89, Method: Composition-based stats.
Identities = 109/398 (27%), Positives = 172/398 (43%), Gaps = 34/398 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E +GSR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A + G +IRGSG A DLR PY
Sbjct: 354 MRADVSELVEMLLAMPNMEQRTQGIGILDRQIARDYSPVGPLIRGSGFARDLRFDHPYAD 413
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 414 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 458
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 459 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 501
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 502 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 539
>gi|237714285|ref|ZP_04544766.1| NADH dehydrogenase subunit I [Bacteroides sp. D1]
gi|262408338|ref|ZP_06084885.1| NADH dehydrogenase (quinone), D subunit [Bacteroides sp. 2_1_22]
gi|293373613|ref|ZP_06619961.1| respiratory-chain NADH dehydrogenase, 49 Kd subunit [Bacteroides
ovatus SD CMC 3f]
gi|294646452|ref|ZP_06724093.1| respiratory-chain NADH dehydrogenase, 49 Kd subunit [Bacteroides
ovatus SD CC 2a]
gi|294809424|ref|ZP_06768129.1| respiratory-chain NADH dehydrogenase, 49 Kd subunit [Bacteroides
xylanisolvens SD CC 1b]
gi|298480350|ref|ZP_06998548.1| NADH dehydrogenase I, B/C/D subunit [Bacteroides sp. D22]
gi|229445777|gb|EEO51568.1| NADH dehydrogenase subunit I [Bacteroides sp. D1]
gi|262353890|gb|EEZ02983.1| NADH dehydrogenase (quinone), D subunit [Bacteroides sp. 2_1_22]
gi|292631438|gb|EFF50068.1| respiratory-chain NADH dehydrogenase, 49 Kd subunit [Bacteroides
ovatus SD CMC 3f]
gi|292638223|gb|EFF56600.1| respiratory-chain NADH dehydrogenase, 49 Kd subunit [Bacteroides
ovatus SD CC 2a]
gi|294443360|gb|EFG12122.1| respiratory-chain NADH dehydrogenase, 49 Kd subunit [Bacteroides
xylanisolvens SD CC 1b]
gi|295086643|emb|CBK68166.1| NADH dehydrogenase subunit C /NADH dehydrogenase subunit D
[Bacteroides xylanisolvens XB1A]
gi|298273631|gb|EFI15194.1| NADH dehydrogenase I, B/C/D subunit [Bacteroides sp. D22]
Length = 530
Score = 332 bits (852), Expect = 5e-89, Method: Composition-based stats.
Identities = 146/390 (37%), Positives = 213/390 (54%), Gaps = 29/390 (7%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+ +N GPQHPA HGV+R + L+GEI+ ++D + G +HRG EK+ E+ T+ Q + D
Sbjct: 170 EEYVVNIGPQHPATHGVMRFRVSLEGEIIRKIDANCGYIHRGIEKMNESLTYPQTLALTD 229
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDY+ HA + +EK +GIE+ R Q IR + E+ RI SHLL + AMD+GAL
Sbjct: 230 RLDYLGAHQNRHALCMCIEKAMGIEVSERVQYIRTIMDELQRIDSHLLFYSCLAMDLGAL 289
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
T +GF +REK++ +E G R+ Y GGV D+ P V+ + + +++
Sbjct: 290 TAFFYGFRDREKILDIFEETCGGRLIMNYNTIGGVQADLHPNFVKRVKEFIPYMRGIIHE 349
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
D+ TGN I + R +G + EDA +G +G R SG A D+RK PY Y ++DF
Sbjct: 350 YHDIFTGNIIAQSRMKGVGVLSREDAISFGCTGGTGRASGWACDVRKRMPYGVYDKVDFK 409
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ GDC+ RYLVRM E+ ES+ II Q ++ + GP I+
Sbjct: 410 EIVYTEGDCFARYLVRMDEIMESLNIIEQLIDNI----PEGPYQEKMKPII--------- 456
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
VP G YAAVE +GEFGV+L S G PYR RA G +
Sbjct: 457 ----------------RVPEGSYYAAVEGSRGEFGVFLESQGDKTPYRLHYRATGLPLVA 500
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A++ +C+G ++AD+ AI G++D V ++DR
Sbjct: 501 AIDTICRGTKIADLIAIGGTIDYVVPDIDR 530
>gi|15803010|ref|NP_289040.1| hydrogenase 4 subunit [Escherichia coli O157:H7 EDL933]
gi|15832603|ref|NP_311376.1| hydrogenase 4 subunit [Escherichia coli O157:H7 str. Sakai]
gi|168748457|ref|ZP_02773479.1| hydrogenase-4, G subunit [Escherichia coli O157:H7 str. EC4113]
gi|168756256|ref|ZP_02781263.1| hydrogenase-4, G subunit [Escherichia coli O157:H7 str. EC4401]
gi|168761093|ref|ZP_02786100.1| hydrogenase-4, G subunit [Escherichia coli O157:H7 str. EC4501]
gi|168768576|ref|ZP_02793583.1| hydrogenase-4, G subunit [Escherichia coli O157:H7 str. EC4486]
gi|168773602|ref|ZP_02798609.1| hydrogenase-4, G subunit [Escherichia coli O157:H7 str. EC4196]
gi|168778450|ref|ZP_02803457.1| hydrogenase-4, G subunit [Escherichia coli O157:H7 str. EC4076]
gi|168787830|ref|ZP_02812837.1| hydrogenase-4, G subunit [Escherichia coli O157:H7 str. EC869]
gi|168798855|ref|ZP_02823862.1| hydrogenase-4, G subunit [Escherichia coli O157:H7 str. EC508]
gi|195936630|ref|ZP_03082012.1| hydrogenase 4 subunit [Escherichia coli O157:H7 str. EC4024]
gi|208806682|ref|ZP_03249019.1| hydrogenase-4, G subunit [Escherichia coli O157:H7 str. EC4206]
gi|208814570|ref|ZP_03255899.1| hydrogenase-4, G subunit [Escherichia coli O157:H7 str. EC4045]
gi|208819807|ref|ZP_03260127.1| hydrogenase-4, G subunit [Escherichia coli O157:H7 str. EC4042]
gi|209399980|ref|YP_002271956.1| hydrogenase-4, G subunit [Escherichia coli O157:H7 str. EC4115]
gi|217327594|ref|ZP_03443677.1| hydrogenase-4, G subunit [Escherichia coli O157:H7 str. TW14588]
gi|254794432|ref|YP_003079269.1| hydrogenase 4 subunit [Escherichia coli O157:H7 str. TW14359]
gi|261223080|ref|ZP_05937361.1| hydrogenase 4, subunit [Escherichia coli O157:H7 str. FRIK2000]
gi|261259368|ref|ZP_05951901.1| hydrogenase 4, subunit [Escherichia coli O157:H7 str. FRIK966]
gi|12516872|gb|AAG57597.1|AE005478_7 hydrogenase 4 subunit [Escherichia coli O157:H7 str. EDL933]
gi|13362819|dbj|BAB36772.1| hydrogenase 4 subunit [Escherichia coli O157:H7 str. Sakai]
gi|187770667|gb|EDU34511.1| hydrogenase-4, G subunit [Escherichia coli O157:H7 str. EC4196]
gi|188017010|gb|EDU55132.1| hydrogenase-4, G subunit [Escherichia coli O157:H7 str. EC4113]
gi|189003251|gb|EDU72237.1| hydrogenase-4, G subunit [Escherichia coli O157:H7 str. EC4076]
gi|189356600|gb|EDU75019.1| hydrogenase-4, G subunit [Escherichia coli O157:H7 str. EC4401]
gi|189362326|gb|EDU80745.1| hydrogenase-4, G subunit [Escherichia coli O157:H7 str. EC4486]
gi|189368454|gb|EDU86870.1| hydrogenase-4, G subunit [Escherichia coli O157:H7 str. EC4501]
gi|189372352|gb|EDU90768.1| hydrogenase-4, G subunit [Escherichia coli O157:H7 str. EC869]
gi|189378645|gb|EDU97061.1| hydrogenase-4, G subunit [Escherichia coli O157:H7 str. EC508]
gi|208726483|gb|EDZ76084.1| hydrogenase-4, G subunit [Escherichia coli O157:H7 str. EC4206]
gi|208735847|gb|EDZ84534.1| hydrogenase-4, G subunit [Escherichia coli O157:H7 str. EC4045]
gi|208739930|gb|EDZ87612.1| hydrogenase-4, G subunit [Escherichia coli O157:H7 str. EC4042]
gi|209161380|gb|ACI38813.1| hydrogenase-4, G subunit [Escherichia coli O157:H7 str. EC4115]
gi|209747696|gb|ACI72155.1| hydrogenase 4 subunit [Escherichia coli]
gi|209747698|gb|ACI72156.1| hydrogenase 4 subunit [Escherichia coli]
gi|209747700|gb|ACI72157.1| hydrogenase 4 subunit [Escherichia coli]
gi|217319961|gb|EEC28386.1| hydrogenase-4, G subunit [Escherichia coli O157:H7 str. TW14588]
gi|254593832|gb|ACT73193.1| hydrogenase 4, subunit [Escherichia coli O157:H7 str. TW14359]
gi|320188819|gb|EFW63478.1| Hydrogenase-4 component G [Escherichia coli O157:H7 str. EC1212]
gi|320640991|gb|EFX10475.1| hydrogenase 4, subunit [Escherichia coli O157:H7 str. G5101]
gi|320646273|gb|EFX15200.1| hydrogenase 4, subunit [Escherichia coli O157:H- str. 493-89]
gi|320651779|gb|EFX20159.1| hydrogenase 4, subunit [Escherichia coli O157:H- str. H 2687]
gi|320657164|gb|EFX24973.1| hydrogenase 4, subunit [Escherichia coli O55:H7 str. 3256-97 TW
07815]
gi|320662770|gb|EFX30102.1| hydrogenase 4, subunit [Escherichia coli O55:H7 str. USDA 5905]
gi|326340282|gb|EGD64086.1| Hydrogenase-4 component G [Escherichia coli O157:H7 str. 1125]
gi|326344967|gb|EGD68711.1| Hydrogenase-4 component G [Escherichia coli O157:H7 str. 1044]
Length = 571
Score = 332 bits (852), Expect = 5e-89, Method: Composition-based stats.
Identities = 109/398 (27%), Positives = 172/398 (43%), Gaps = 34/398 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGNSGARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E +GSR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A + G +IRGSG A DLR PY
Sbjct: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQIARDYSPVGPLIRGSGFARDLRFDHPYAD 413
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 414 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 458
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 459 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 501
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 502 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 539
>gi|187733753|ref|YP_001881277.1| hydrogenase-4, G subunit [Shigella boydii CDC 3083-94]
gi|187430745|gb|ACD10019.1| hydrogenase-4, G subunit [Shigella boydii CDC 3083-94]
Length = 571
Score = 332 bits (852), Expect = 6e-89, Method: Composition-based stats.
Identities = 110/398 (27%), Positives = 174/398 (43%), Gaps = 34/398 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E +GSR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR +IG + + A + G +IRGSG A DLR PY
Sbjct: 354 MRADVSELVEMLLATPNMEQRTQDIGILDRQIARDYSPVGPLIRGSGFARDLRFDHPYAD 413
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +L
Sbjct: 414 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMLDTP--------------- 458
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 459 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 501
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 502 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 539
>gi|295837269|ref|ZP_06824202.1| NADH dehydrogenase I, B/C/D subunits [Streptomyces sp. SPB74]
gi|295826439|gb|EFG64855.1| NADH dehydrogenase I, B/C/D subunits [Streptomyces sp. SPB74]
Length = 386
Score = 332 bits (852), Expect = 6e-89, Method: Composition-based stats.
Identities = 131/394 (33%), Positives = 204/394 (51%), Gaps = 28/394 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+S +N GPQHP+ HGVLRL L LDGE + +P +G +HRG EKL E + + Q +
Sbjct: 18 AESTDMVLNIGPQHPSTHGVLRLRLVLDGERIVSAEPVVGYMHRGAEKLFEARDYRQIIM 77
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+R D+++ + E +AVE++LG+E+P R +R L +E+ R+L+HL+ + + +++
Sbjct: 78 LANRHDWLSAFSNELGVVMAVERMLGMEVPERAVWLRTLLAELNRVLNHLMFLGSYPLEL 137
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP + F ERE+L E SG RMH + R GG+ +DIP +
Sbjct: 138 GGITPMFYAFREREELQAVMEEVSGGRMHYMFNRVGGLKEDIPLGWPGRVRTALARVRER 197
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ D L+ GN IF+ R ++G + +G SG + R S +DLR+ +PY Y EL
Sbjct: 198 MPDYDGLVLGNEIFRGRTRDVGVLSARAVHAYGVSGPIARASSVDFDLRRDEPYLAYGEL 257
Query: 244 DF--DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ + GDC R+ + + S+ + C++ L + GPV+ PK++
Sbjct: 258 QDVLRVVTREEGDCLARFECLLDQTHNSLDLAEACLDHL-AELPPGPVNQRLPKVL---- 312
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
P G YA E P G G YL+S G PYR K+R+
Sbjct: 313 ---------------------KAPEGHTYAWTENPLGLNGYYLVSKGEKTPYRLKLRSAS 351
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ ++QA+ L G +AD+ AILGSL V G++D
Sbjct: 352 FNNIQALTELLPGTLVADMVAILGSLFFVVGDID 385
>gi|291515383|emb|CBK64593.1| NADH dehydrogenase subunit C /NADH dehydrogenase subunit D
[Alistipes shahii WAL 8301]
Length = 531
Score = 332 bits (852), Expect = 6e-89, Method: Composition-based stats.
Identities = 142/392 (36%), Positives = 208/392 (53%), Gaps = 29/392 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ + IN GPQHPA HGVLR + L+GEI++++D H G +HRG EK+ E T+ Q +
Sbjct: 169 EEEEYVINVGPQHPATHGVLRFRVSLEGEIIKKLDVHCGYIHRGIEKMCEELTYPQTLAL 228
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDY+ HA + +EK LG+E+P R Q IR + E+ RI SHLL MD+G
Sbjct: 229 TDRLDYLGASQNRHALCMCIEKGLGVEVPERVQYIRTIMDELQRIDSHLLFFACLCMDMG 288
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
ALT +GF +REK++ E+ +G R+ Y GGV DI P+ V + + L
Sbjct: 289 ALTAFFYGFRDREKVLDILEQTTGGRLIQTYNTIGGVQADIHPDFVRKVKEFIAYMRPVL 348
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ ++ TGN I ++R G + EDA +G +G R +G A D+RK PY Y ++D
Sbjct: 349 REYHEIFTGNVIAQERLKGTGVLTREDAISFGATGGTGRAAGWACDVRKRHPYAVYGKVD 408
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F+ + GDC RY+VRM E+ +S+ II Q ++ +
Sbjct: 409 FEEVLFTEGDCLARYMVRMREIEQSMHIIEQLIDNIPEGEYQ------------------ 450
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
+P G YAAVE +GEFGV++ S G PYR K R+ G
Sbjct: 451 -----------LKMKPVIRIPEGSYYAAVEGSRGEFGVFIESRGDKFPYRMKFRSTGLPL 499
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +E + +G ++AD+ AI G+LD V ++DR
Sbjct: 500 VSCLETIARGTKIADLIAIGGTLDYVVPDIDR 531
>gi|220916481|ref|YP_002491785.1| NADH dehydrogenase (quinone) [Anaeromyxobacter dehalogenans 2CP-1]
gi|219954335|gb|ACL64719.1| NADH dehydrogenase (quinone) [Anaeromyxobacter dehalogenans 2CP-1]
Length = 379
Score = 332 bits (852), Expect = 6e-89, Method: Composition-based stats.
Identities = 145/399 (36%), Positives = 211/399 (52%), Gaps = 34/399 (8%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ +NFGPQHP+ HGV+ ++E DGE+++R P +G LHR EK+ E + +
Sbjct: 10 DRQNEEMILNFGPQHPSTHGVINFLVETDGEVLKRATPDVGYLHRSIEKIGEMVGYPGFM 69
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR+DYVA M YA+AVE+LL IE+P R Q +R + E+ RI SHL++V T MD
Sbjct: 70 PYTDRVDYVAAMFANEGYAIAVERLLKIEVPQRAQWLRAISCELCRIASHLVSVGTMVMD 129
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA TP L G ERE + E G+R+ Y R GGV D+P + + + D F
Sbjct: 130 IGAFTPMLHGIRERETINDLLEALCGARLTYNYHRIGGVAFDLPEGWRDKVLHFLDHFDK 189
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L + L++ N I+ +R N+ + A +G G +RGSG WD+R+ PY Y
Sbjct: 190 FLAEFDRLISFNEIYVKRLANVAVIPGPMAINYGLVGPNLRGSGVDWDVRRDLPYGAYPN 249
Query: 243 LDFDIPIGK-----HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIV 297
FD+P+GK GD +DRY VR +EM ES KI+RQ ++ L V +
Sbjct: 250 FKFDVPVGKGFYGTSGDSFDRYYVRCLEMAESSKIVRQALDSLPEGEITAKVPRN----- 304
Query: 298 PPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKI 357
GE VE+ +GE Y+ISDG NK YR +
Sbjct: 305 ------------------------IKPEAGEAIGRVESARGELAYYVISDGTNKAYRVRA 340
Query: 358 RAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
R + + +E + +G +AD+ A++ SLD+V E+DR
Sbjct: 341 RTGSFTAMCIIEDISRGLMVADLVALISSLDVVAPEIDR 379
>gi|314986334|gb|EFT30426.1| NADH dehydrogenase, D subunit [Propionibacterium acnes HL005PA2]
Length = 390
Score = 332 bits (851), Expect = 6e-89, Method: Composition-based stats.
Identities = 159/391 (40%), Positives = 221/391 (56%), Gaps = 19/391 (4%)
Query: 24 LRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALA 83
+RLI+ELDGE V + IG LH G EK +E +T+ Q V + R +YVA E Y LA
Sbjct: 1 MRLIIELDGESVSDLRVGIGFLHTGIEKNMEFRTWTQGVTFMTRCNYVANFFNELVYCLA 60
Query: 84 VEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMV 141
VEKLLGI ++P R +++RV+ +E+ RI SHL+ V T +++GA + G ERE ++
Sbjct: 61 VEKLLGITDDVPERARVLRVMITELNRISSHLIAVGTGGLELGASSVAEVGLREREIILE 120
Query: 142 FYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRN 201
F + +G RM+ A+ RPGGV D+P ++ + L +I N IFK R
Sbjct: 121 FNQAVTGLRMNNAWIRPGGVATDLPETGLDQLRDLIKRMEKYLPEIGQFCNENPIFKART 180
Query: 202 VNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLV 261
IG L G +G +R +G WDLRK+QPY Y DFD+ DCY R+ +
Sbjct: 181 QGIGYADLSTCMALGVTGPALRATGLPWDLRKTQPYCDYDTYDFDVATWDTCDCYGRFRI 240
Query: 262 RMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK----------------RADMK 305
R+ EM +SV+I++QC+ RL DP I P R M
Sbjct: 241 RLEEMDQSVRILKQCLKRLEDTQGDRH-MVEDPHIAWPAELALGPDGQGNSNEHIRHIMG 299
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
SME+LIHHFK+ TEG+ VP G+VY A+E GE G +L+SDGG +PYR +R PG+ ++
Sbjct: 300 ESMEALIHHFKIVTEGFRVPAGQVYQAIEGAGGELGCHLVSDGGVRPYRSHLRDPGFVNV 359
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Q++ +C+G L+DV L SLD V G VDR
Sbjct: 360 QSLPAMCEGGMLSDVVPSLASLDPVMGGVDR 390
>gi|31580610|gb|AAP51029.1| EchE [Desulfovibrio gigas]
Length = 358
Score = 332 bits (851), Expect = 7e-89, Method: Composition-based stats.
Identities = 105/387 (27%), Positives = 175/387 (45%), Gaps = 33/387 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ FGPQHP + L L ++ EIV P +G +HRG EKL + + + Q V +R+
Sbjct: 5 ILPFGPQHPVLPEPIHLKLTVEDEIVVDALPALGYVHRGLEKLCDIRDYNQMVQIVERVC 64
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ Y +E+++G+++P R +++RV++SE+ R+ SHLL + A G
Sbjct: 65 GICSKIHAMCYCQGIEEMMGVQVPDRAKVLRVVWSELHRVHSHLLWLGLFADAFGFEALF 124
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
++ REK+M E +G+R+ + GGV +D+ E + I + ++
Sbjct: 125 YQFWKIREKVMDINEATTGNRVIVSVNEVGGVRRDLSAEQIRWIEAELKVVEKQVRELRS 184
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + K+R V G + A G G +RGSG D R+ + Y + +DF
Sbjct: 185 TILDDYTVKKRTVGKGVLTGAQALELGAVGPTLRGSGVFQDARQLK-YAAFDRIDFQPIA 243
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
+GD + R VR E +S+ ++RQ + RL V
Sbjct: 244 YPNGDSWSRCAVRYDETLQSIDLVRQALARLPEGELSTKVKGK----------------- 286
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
P GEV VE P+GE YL +G N RC+IR P ++++ +
Sbjct: 287 ---------------PEGEVVTRVEQPRGELLYYLKGNGTNNLDRCRIRTPTFSNIPPLV 331
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVDR 396
+ G +LADV ++ S+D +R
Sbjct: 332 VMLPGLELADVPVVVLSIDPCISCTER 358
>gi|302559287|ref|ZP_07311629.1| NADH dehydrogenase I, B/C/D subunits [Streptomyces griseoflavus
Tu4000]
gi|302476905|gb|EFL39998.1| NADH dehydrogenase I, B/C/D subunits [Streptomyces griseoflavus
Tu4000]
Length = 383
Score = 332 bits (851), Expect = 7e-89, Method: Composition-based stats.
Identities = 135/394 (34%), Positives = 206/394 (52%), Gaps = 28/394 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+S +N GPQHP+ HGVLRL L LDGE + +P IG +HRG EKL E + + Q +
Sbjct: 15 AESTDMVLNIGPQHPSTHGVLRLKLVLDGERIVHAEPVIGYMHRGAEKLFEARDYRQIIM 74
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+R D+++ + E LAVE++LG+E+P R +R L +E+ R L+HL+ + + +++
Sbjct: 75 LANRHDWLSAFSNELGVVLAVERMLGMEVPERAVWLRTLLAELNRALNHLMFLGSYPLEL 134
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP + F ERE+L E SG RMH + R GG+ +D+P S
Sbjct: 135 GGITPIFYAFTEREELQHVMEEVSGGRMHYMFNRVGGLKEDLPAGWTTRARAAVADVRSR 194
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
++ DL+ GN IF+ R +G + +G SG + RGSG +DLR+ +PY Y EL
Sbjct: 195 MDRFDDLVLGNEIFRGRTRGVGVLSPRAVHAYGVSGPIARGSGVDFDLRRDEPYLAYGEL 254
Query: 244 DF--DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ + GDC R+ + + ++ + C++RL + GPV+ PK++
Sbjct: 255 GDVLKVVTREEGDCLARFECLLEQTHNALDLADACLDRL-AELPPGPVNQRLPKVL---- 309
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
P G YA E P G G YL+S G PYR K+R+
Sbjct: 310 ---------------------KAPEGHTYAWTENPLGINGYYLVSKGEKTPYRLKLRSAS 348
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
Y ++QA+ L G +AD+ AILGS+ V G++D
Sbjct: 349 YNNIQALTELLPGTLVADMVAILGSMFFVVGDID 382
>gi|146296551|ref|YP_001180322.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145410127|gb|ABP67131.1| ech hydrogenase subunit E [Caldicellulosiruptor saccharolyticus DSM
8903]
Length = 359
Score = 332 bits (851), Expect = 8e-89, Method: Composition-based stats.
Identities = 114/391 (29%), Positives = 181/391 (46%), Gaps = 33/391 (8%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ + FGPQHP L+L L L+ E V P IG +HRG EKL E K Q +
Sbjct: 2 GKRTIVPFGPQHPVLPEPLQLRLVLEDEKVVEAIPAIGYVHRGLEKLAEEKDINQNIYVV 61
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
+R+ + Q AY +E+L+G+E+P R + +RV+++E+ R+ SH L + A G
Sbjct: 62 ERVCGICSFQQALAYCQGIEELMGVEVPERAKYLRVIWAELHRLHSHHLWLGLLADAFGF 121
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ + + RE +M E +GSR+ + GGV +DI E + I L
Sbjct: 122 ESLFMQCWRNRELVMDMMEATAGSRVIISTNIIGGVRRDIDEEKQKFILDNLAKLEEELK 181
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
I + K+R V +G + E+A+ G G M R SG DLR + Y Y LDF
Sbjct: 182 RIEGAFLNDYTVKKRLVGVGVLSKEEAYELGCVGPMARASGINMDLRTTG-YAAYGALDF 240
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ + GDCY R VR+ E +S+ +IRQ ++++ PV
Sbjct: 241 EPVVEYDGDCYARLKVRLRECYQSIDLIRQAISKMPEGEISTPVKGF------------- 287
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
P GE+ + VE P+GE Y+ ++G R +IR P +A++
Sbjct: 288 -------------------PNGEIISRVEQPRGEDVYYIKANGTKNLERLRIRTPTFANI 328
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A+ + +G A+V ++ ++D +R
Sbjct: 329 PALVKMLQGIDFAEVPMLVLTIDPCISCTER 359
>gi|283852203|ref|ZP_06369476.1| NADH dehydrogenase (quinone) [Desulfovibrio sp. FW1012B]
gi|283572429|gb|EFC20416.1| NADH dehydrogenase (quinone) [Desulfovibrio sp. FW1012B]
Length = 385
Score = 331 bits (850), Expect = 8e-89, Method: Composition-based stats.
Identities = 149/391 (38%), Positives = 215/391 (54%), Gaps = 29/391 (7%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
++ GPQHP+ HGVLR++LELDGE + R +P +G +HR E + E KT++Q +P
Sbjct: 24 DDKLILSMGPQHPSTHGVLRIMLELDGEYILRAEPILGYVHRMHEWMAEQKTYMQFMPNM 83
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
R+DY+ M AYA AVE+LLG+++P R + IRV +E+ RI SHLL +D+GA
Sbjct: 84 GRVDYLHAMAWNWAYAGAVERLLGVQVPERAEYIRVAVTELNRISSHLLWWGAYLLDLGA 143
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
TP ++ F++RE+++ + +GSR+ +YF GGV+ D+P + + S L
Sbjct: 144 FTPIMYAFDDRERILDILQDVTGSRLTYSYFTFGGVYGDVPSDFASRCLEFTRHLRSRLP 203
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
DL+T N I + R IG + +E A +G +G ++RGSGA D R+++PY Y+ DF
Sbjct: 204 MYRDLVTDNVILRGRCEGIGEMNVELARKYGATGPVLRGSGAPVDTRRAEPYGVYNRFDF 263
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
IP GD RY+VRM E+ S II Q V L
Sbjct: 264 RIPAYNEGDAMARYMVRMDELTTSCDIIDQAVQGLPEGPIQ------------------- 304
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
+ P GE AVE +G+ V++ SDGG KPYR K+RAPG+++L
Sbjct: 305 ----------AKVGKTVKPPKGEACYAVEGARGKILVHVRSDGGPKPYRVKLRAPGFSNL 354
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
L +G LAD +ILGSLD+V E+DR
Sbjct: 355 SLFSELSRGTLLADAVSILGSLDLVIPEIDR 385
>gi|298530617|ref|ZP_07018019.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans
ASO3-1]
gi|298509991|gb|EFI33895.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans
ASO3-1]
Length = 386
Score = 331 bits (850), Expect = 9e-89, Method: Composition-based stats.
Identities = 144/394 (36%), Positives = 226/394 (57%), Gaps = 28/394 (7%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++ + +N GPQHP+ HGVLR++LE+DGE + R +P +G +HR EK+ E ++ Q +
Sbjct: 21 TEREDTLVLNMGPQHPSTHGVLRILLEIDGEYILRAEPVLGYIHRMHEKMAEVMSYPQYL 80
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P R DY+ + A+ AVE+L+GIE+P R + IRV+ E+ RI SHLL +D
Sbjct: 81 PNPGRTDYLHALAWNWAHVAAVERLMGIEVPERAEYIRVITCELNRISSHLLWWGAILLD 140
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA TP ++ F++RE++ +R +GSR+ Y+R GGV DI + +E C
Sbjct: 141 LGAFTPIMYAFDDRERIQDIMQRNTGSRLTYCYYRFGGVSADIDDKFIEATRAECARLKD 200
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
DL+T N I ++R +G + ++ +G +G ++RGSG A+D+R+++PY Y+
Sbjct: 201 RAKMFKDLVTDNFILRKRMEEVGEIPIDTCRKYGATGPVLRGSGQAYDVRRAEPYSIYNR 260
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
DF+IP D RYLVRM E++ES+KII Q ++ L + + P + PK
Sbjct: 261 FDFNIPTYDTCDSMGRYLVRMDEIQESIKIIEQALDTLPEGDYILPKAPKRPKPPA---- 316
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
G+VY A+E +G+ G++L+SDGG PYR K+RAPG+
Sbjct: 317 ------------------------GDVYFALEGARGKIGMHLVSDGGKSPYRLKLRAPGF 352
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++L + +G ++D AIL SLD+V E+DR
Sbjct: 353 SNLSLFSEVAQGTLISDAIAILASLDLVIPEIDR 386
>gi|290958414|ref|YP_003489596.1| electron transporter [Streptomyces scabiei 87.22]
gi|260647940|emb|CBG71045.1| putative electron transport protein [Streptomyces scabiei 87.22]
Length = 388
Score = 331 bits (850), Expect = 9e-89, Method: Composition-based stats.
Identities = 132/394 (33%), Positives = 204/394 (51%), Gaps = 28/394 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+S +N GPQHP+ HGVLRL L LDGE ++ +P IG +HRG EKL E + + Q +
Sbjct: 20 AESTDMVLNIGPQHPSTHGVLRLRLVLDGERIQHAEPVIGYMHRGAEKLFEARDYRQIIM 79
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+R D+++ + E L VE++LG+E+P R R L +E+ R+L+HL+ + + +++
Sbjct: 80 LANRHDWLSAFSNELGVVLGVERMLGMEVPERAVWTRTLLAELNRVLNHLMFLGSYPLEL 139
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP + F ERE+L E SG RMH + R GG+ +D+P S
Sbjct: 140 GGITPVFYAFREREELQNVMEEISGGRMHYMFNRVGGLKEDLPAGWTARARTAVADVRSR 199
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ DL+ GN IF+ R ++G + + +G SG + R SG DLR+ +PY Y EL
Sbjct: 200 MGVFDDLVLGNEIFRGRTRDVGVLSPQAVHAYGVSGPIARASGVDLDLRRDEPYLAYGEL 259
Query: 244 DF--DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ + GDC R+ + + ++ + C++R+ GP++ PK++
Sbjct: 260 QDVLKVVTREEGDCLARFECLLEQTHNALALADACLDRI-ADLPPGPINQRLPKVL---- 314
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
P G YA E P G G YL+S G PYR K+R+
Sbjct: 315 ---------------------KAPEGHTYAWTENPLGINGYYLVSKGEKTPYRLKLRSAS 353
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
Y ++QA+ L G +AD+ AILGSL V G++D
Sbjct: 354 YNNIQALTELLPGTLVADMVAILGSLFFVVGDID 387
>gi|298373134|ref|ZP_06983124.1| NADH dehydrogenase I, D subunit [Bacteroidetes oral taxon 274 str.
F0058]
gi|298276038|gb|EFI17589.1| NADH dehydrogenase I, D subunit [Bacteroidetes oral taxon 274 str.
F0058]
Length = 543
Score = 331 bits (850), Expect = 9e-89, Method: Composition-based stats.
Identities = 137/389 (35%), Positives = 209/389 (53%), Gaps = 29/389 (7%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
F +NFGPQHPA HGVL L + LDGE++++VDP+ G +HRG EK+ E + Q + DR
Sbjct: 184 DFVVNFGPQHPATHGVLHLRVSLDGEVIKKVDPNFGYIHRGIEKICEVSMYHQILHLADR 243
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
LDY++ HA +A+EK + +E+P R Q +R + E+ RI SHLL AMD+GA+T
Sbjct: 244 LDYLSGSINRHAVCMAIEKGIQLEVPPRAQYVRTIIDELTRIASHLLGWGAMAMDMGAIT 303
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
++G +REK+M +E+ G R+ A Y GG+ +DI P+ +D+ + L +
Sbjct: 304 AFVYGMRDREKIMKIFEKTCGGRLMANYSMIGGLMEDIHPDFQKDVKEFVVYMRKMLREH 363
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
L TGN I + R +G + E A G +G + R SG D+RK +PY Y + +F
Sbjct: 364 HILFTGNPIARGRMEGVGHLTREQAISIGATGPVGRASGWQCDVRKIEPYAAYDKAEFTA 423
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
+ + G +DRY +R+ E+ ES+KII Q V+ + + PK +
Sbjct: 424 VLREGGMTFDRYYIRLDEIEESLKIIEQLVDNIPEGP-----FCAKPKPI---------- 468
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
+P GE VE +G+F VY+ S G PYR K R+P +
Sbjct: 469 --------------VKLPEGEYIQRVENARGDFSVYINSRGDKFPYRVKFRSPSLVLVNV 514
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ + G+++AD+ + GSLD V +DR
Sbjct: 515 LKHIAPGNKIADLIMLGGSLDYVIPCIDR 543
>gi|284922434|emb|CBG35521.1| hydrogenase-4 component G [Escherichia coli 042]
Length = 571
Score = 331 bits (850), Expect = 9e-89, Method: Composition-based stats.
Identities = 106/397 (26%), Positives = 170/397 (42%), Gaps = 32/397 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E +GSR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A + G +IRGSG A DLR PY
Sbjct: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQIARDYSPVGPLIRGSGFARDLRFDHPYAD 413
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ + + + P P
Sbjct: 414 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFAP 473
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
VEAP+GE + + K +R + RA
Sbjct: 474 -------------------------------GFVEAPRGEDVHWSMLGDNQKLFRWRCRA 502
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 503 ATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 539
>gi|83591009|ref|YP_431018.1| NADH dehydrogenase (ubiquinone), 30 kDa subunit [Moorella
thermoacetica ATCC 39073]
gi|83573923|gb|ABC20475.1| NADH dehydrogenase (ubiquinone), 30 kDa subunit [Moorella
thermoacetica ATCC 39073]
Length = 574
Score = 331 bits (850), Expect = 1e-88, Method: Composition-based stats.
Identities = 110/397 (27%), Positives = 172/397 (43%), Gaps = 32/397 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETK-TFL 59
++ + + GP H + L +DGE + D + +HRG EKL E + +
Sbjct: 176 IEVEGEGIVEVPLGPLHITSDEPGHFRLFVDGEYIVDADYRLFYVHRGMEKLAENRMDYD 235
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
Q +R+ + AYA AVE GIE+P R Q IR + E+ R+ SHLLN+
Sbjct: 236 QITFLAERICGICGYAHSVAYAAAVETANGIEVPPRAQYIRTILLEVERLHSHLLNLGLA 295
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
A VG + + F REK M E +G R GGV +DI E + +
Sbjct: 296 AHLVGFDSGFMHFFRVREKAMQMAEILTGGRKTYGINLIGGVRRDIFKEERDQVLRLIAE 355
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ L+++ D+L F R +G ++ + A + G +RGSG A D R PY
Sbjct: 356 IRTELDELLDILINTPNFISRTQGVGRLERQVARDFSPVGPNMRGSGYARDTRADHPYGA 415
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + +++ D R LVR E+ ES II +C+ + GPV P
Sbjct: 416 YDRVSWEVISKDGCDVLSRELVRAAELYESFNIIERCLTEM----PPGPVLTEGFAYKP- 470
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
H F L EAP+GE +L++ K YR ++RA
Sbjct: 471 -------------HTFAL-------------GYTEAPRGENVHWLMTGNNQKLYRWRVRA 504
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Y + A+ ++ +G+ ++D I+ S+D + +R
Sbjct: 505 ATYNNWPALRYMFRGNTVSDAPLIVASIDPCYSCTER 541
>gi|191169662|ref|ZP_03031361.1| hydrogenase-4, G subunit [Escherichia coli B7A]
gi|190900296|gb|EDV60146.1| hydrogenase-4, G subunit [Escherichia coli B7A]
Length = 571
Score = 331 bits (850), Expect = 1e-88, Method: Composition-based stats.
Identities = 108/398 (27%), Positives = 172/398 (43%), Gaps = 34/398 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGI++P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIDVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E +GSR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A + G +IRGSG A DLR PY
Sbjct: 354 MRADVSELVEMLLAMPNMEQRTQGIGILDRQIARDYSPVGPLIRGSGFARDLRFDHPYAD 413
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 414 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 458
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 459 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 501
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 502 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 539
>gi|86158996|ref|YP_465781.1| NADH dehydrogenase (ubiquinone) [Anaeromyxobacter dehalogenans
2CP-C]
gi|123723116|sp|Q2IL16|NUOD2_ANADE RecName: Full=NADH-quinone oxidoreductase subunit D 2; AltName:
Full=NADH dehydrogenase I subunit D 2; AltName:
Full=NDH-1 subunit D 2
gi|85775507|gb|ABC82344.1| NADH dehydrogenase subunit D [Anaeromyxobacter dehalogenans 2CP-C]
Length = 379
Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats.
Identities = 145/399 (36%), Positives = 211/399 (52%), Gaps = 34/399 (8%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ +NFGPQHP+ HGV+ ++E DGE+++R P +G LHR EK+ E + +
Sbjct: 10 DRQNEEMILNFGPQHPSTHGVINFLVETDGEVLKRATPDVGYLHRSIEKIGELVGYPGFM 69
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR+DYVA M YA+AVE+LL IE+P R Q +R + E+ RI SHL++V T MD
Sbjct: 70 PYTDRVDYVAAMFANEGYAIAVERLLKIEVPQRAQWLRAISCELCRIASHLVSVGTMVMD 129
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA TP L G ERE + E G+R+ Y R GGV D+P + + + D F
Sbjct: 130 IGAFTPMLHGIRERETINDLLEALCGARLTYNYHRIGGVAFDLPEGWRDKVLHFLDHFDK 189
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L + L++ N I+ +R N+ + A +G G +RGSG WD+R+ PY Y
Sbjct: 190 FLAEFDRLISFNEIYVKRLANVAVIPGPMAINYGLVGPNLRGSGVDWDVRRDLPYGAYPN 249
Query: 243 LDFDIPIGK-----HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIV 297
FD+P+GK GD +DRY VR +EM ES KI+RQ ++ L V +
Sbjct: 250 FKFDVPVGKGFFGTAGDSFDRYYVRCLEMAESSKIVRQALDSLPEGEITAKVPRN----- 304
Query: 298 PPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKI 357
GE VE+ +GE Y+ISDG NK YR +
Sbjct: 305 ------------------------IKPEAGEALGRVESARGELAYYVISDGTNKAYRVRA 340
Query: 358 RAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
R + + +E + +G +AD+ A++ SLD+V E+DR
Sbjct: 341 RTGSFTAMCIIEDISRGLMVADLVALISSLDVVAPEIDR 379
>gi|300727165|ref|ZP_07060583.1| NADH dehydrogenase I, d subunit [Prevotella bryantii B14]
gi|299775551|gb|EFI72143.1| NADH dehydrogenase I, d subunit [Prevotella bryantii B14]
Length = 524
Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats.
Identities = 133/392 (33%), Positives = 205/392 (52%), Gaps = 29/392 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
F +NFGP HP+ HGVLRL +DGE ++ V PH+G +HRG EK++E T+ Q +
Sbjct: 162 DDDDFVMNFGPNHPSTHGVLRLQTIVDGETIKNVYPHLGYIHRGIEKMMENMTYPQTLAL 221
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRL+Y+ M+ HA +E+ +GIE+ R + IR + E+ RI +HLL + T A D+
Sbjct: 222 TDRLNYLCAMHHRHALVGVIEEAMGIELNDRIKYIRTIMDELQRIDNHLLFLGTCAQDLS 281
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
ALT L+ +RE L+ E +G R+ Y+R GG+ DI P VE+ +C +
Sbjct: 282 ALTAFLYCMRDREHLLNVMEETTGGRLIQNYYRIGGLQDDIDPNFVENTKAFCKYMRPMV 341
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ D+ N I QR +G + ED +G +G R SG D+RK+ PY+ Y ++
Sbjct: 342 KEYLDVFGDNVITHQRLEGVGYMNQEDCINYGVTGPAGRASGWHNDVRKNHPYDMYDKVQ 401
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
++ +G + D DRY++ + E+ +S+ II Q ++ + G I+
Sbjct: 402 WNDVVGSNCDSMDRYMIHINEIYQSLDIIEQLIDNI----PEGEYYIKQKPII------- 450
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
VP G+ + +VE GEFGVYL S G PYR K+R G +
Sbjct: 451 ------------------KVPEGQWFFSVEGGAGEFGVYLDSRGDKSPYRVKMRPMGLSL 492
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A + + KG ++AD+ A S+D V ++DR
Sbjct: 493 AGAFDKMLKGQKIADLIATGASIDFVIPDLDR 524
>gi|218705986|ref|YP_002413505.1| hydrogenase 4, subunit [Escherichia coli UMN026]
gi|218433083|emb|CAR13978.1| hydrogenase 4, subunit [Escherichia coli UMN026]
Length = 555
Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats.
Identities = 109/398 (27%), Positives = 172/398 (43%), Gaps = 34/398 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 158 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 217
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 218 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 277
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E +GSR GGV +DI E
Sbjct: 278 CHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 337
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A + G +IRGSG A DLR PY
Sbjct: 338 MRADVSELVEMLLATPNMEQRTQGIGILDRQIARDYSPVGPLIRGSGFARDLRFDHPYAD 397
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 398 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 442
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 443 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 485
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 486 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523
>gi|317154074|ref|YP_004122122.1| NADH-ubiquinone oxidoreductase subunit 49kDa [Desulfovibrio
aespoeensis Aspo-2]
gi|316944325|gb|ADU63376.1| NADH-ubiquinone oxidoreductase chain 49kDa [Desulfovibrio
aespoeensis Aspo-2]
Length = 359
Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats.
Identities = 116/387 (29%), Positives = 188/387 (48%), Gaps = 32/387 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I FGPQHP + L L+++ EIV+ P +G +HRG EKL + + + Q + +R+
Sbjct: 5 VIPFGPQHPVLPEPVHLTLKVEDEIVKEAIPALGYVHRGLEKLADIRDYHQMIQVCERVC 64
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ M Y+ A+E+L+ IE+P RGQ++RV++SE+ R SHLL + A G +
Sbjct: 65 GICSMIHAVCYSQAIEELMEIEVPKRGQMLRVIWSELHRTHSHLLWLGLFADAFGFESLF 124
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ ++ RE++M E +GSR+ + GGV D+ + + I D + + +
Sbjct: 125 MQFWKIRERIMDINEATTGSRVIVSVNVIGGVRADLSSDQIRWILGEIDIVEKEVRALQE 184
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + K R V +G + E+A+ G +G +RGSG A D+R Y YSE+DF+
Sbjct: 185 TIMNDYTVKARTVGVGVLSKENAYLLGAAGPTLRGSGVAQDMR-MLGYGGYSEIDFEPVF 243
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GDC+ R VR E +S+ ++RQ + +L V +
Sbjct: 244 ETSGDCWARSTVRFRETLQSMDLVRQAIAKLPEGELAAKVKGN----------------- 286
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
P GEVY VE P+GE Y+ +G R +IR P +A++ +
Sbjct: 287 --------------PPEGEVYTRVEQPRGECVYYIKGNGTKHLDRLRIRTPTFANIPPLL 332
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVDR 396
+ G +LADV I+ S+D +R
Sbjct: 333 AMLPGCELADVPVIVLSIDPCISCTER 359
>gi|323967931|gb|EGB63343.1| respiratory-chain NADH dehydrogenase [Escherichia coli M863]
gi|327252137|gb|EGE63809.1| hydrogenase-4 component G [Escherichia coli STEC_7v]
Length = 571
Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats.
Identities = 109/398 (27%), Positives = 172/398 (43%), Gaps = 34/398 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEHIVDADYRLFYVHRGMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E +GSR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGGVRRDILKEQRLQTMKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A + G +IRGSG A DLR PY
Sbjct: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQIARDYSPVGPLIRGSGFARDLRFDHPYAD 413
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 414 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 458
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 459 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 501
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 502 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 539
>gi|256017366|ref|ZP_05431231.1| hydrogenase 4 membrane subunit [Shigella sp. D9]
gi|332278365|ref|ZP_08390778.1| hydrogenase 4 subunit [Shigella sp. D9]
gi|332100717|gb|EGJ04063.1| hydrogenase 4 subunit [Shigella sp. D9]
Length = 571
Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats.
Identities = 109/398 (27%), Positives = 171/398 (42%), Gaps = 34/398 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E GSR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A + G +IRGSG A DLR PY
Sbjct: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQIARDYSPVGPLIRGSGFARDLRFDHPYAD 413
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 414 YGNIPKTLFTFTGGDVFSRMMVRVKETFDSLAMLEFALDNMPDTP--------------- 458
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 459 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 501
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 502 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 539
>gi|302535198|ref|ZP_07287540.1| NADH dehydrogenase (quinone), D subunit [Streptomyces sp. C]
gi|302444093|gb|EFL15909.1| NADH dehydrogenase (quinone), D subunit [Streptomyces sp. C]
Length = 380
Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats.
Identities = 131/394 (33%), Positives = 206/394 (52%), Gaps = 28/394 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+S +N GPQHP+ HGVLRL L LDGE + +P +G +HRG EKL E + + Q V
Sbjct: 12 AESTDMVLNIGPQHPSTHGVLRLRLVLDGERIASAEPVVGYMHRGAEKLFEARDYRQIVM 71
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+R D+++ + E +AVE++LG+E+P R +R L +E+ R+L+HL+ + + +++
Sbjct: 72 LANRHDWLSAFSNELGVVMAVERMLGMEVPERAVWMRTLLAELNRVLNHLMFLGSYPLEL 131
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP F ERE+L E SG RMH + R GG+ +D+P + +
Sbjct: 132 GGITPIFHAFREREELQAVMEEISGGRMHYMFNRVGGLKEDLPAGWLGRARAAIADVRTR 191
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
++ L+ GN IF+ R +G + E +G SG + R SG +DLR+ +PY Y EL
Sbjct: 192 MDVYDKLVHGNEIFRARTRGVGVLSAEAVHAYGVSGPIARASGVDFDLRRDEPYLAYGEL 251
Query: 244 DF--DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ GDC R+ V + + ++ + C++R+ + GPV+ PK++
Sbjct: 252 ADVLKVVTRTEGDCLARFEVLLDQTHNALDLAVACLDRM-AELPPGPVNQRLPKVL---- 306
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
P G YA E P G G YL+S G PYR K+R+
Sbjct: 307 ---------------------KAPEGSTYAWTENPLGINGYYLVSKGEKTPYRLKLRSAS 345
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ ++QA+ L G +AD+ +ILGSL V G++D
Sbjct: 346 FNNIQALAVLLPGQLVADMVSILGSLFFVVGDID 379
>gi|70608049|ref|YP_256919.1| NADH dehydrogenase subunit D [Sulfolobus acidocaldarius DSM 639]
gi|68568697|gb|AAY81626.1| NADH-ubiquinone oxidoreductase [Sulfolobus acidocaldarius DSM 639]
Length = 400
Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats.
Identities = 140/388 (36%), Positives = 216/388 (55%), Gaps = 7/388 (1%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+N GPQHP + G +R+ ++L+G+I+E VD +G +HR EKL E + ++ +P +R
Sbjct: 19 ELNVGPQHPGS-GHMRIYVKLNGDIIEDVDLDVGYVHRSVEKLSEVRNYMHLIPLIERPA 77
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ ++ Y +AVEK+L +++P R Q +R L +E+ RI SHL + A+ +G T
Sbjct: 78 ILDSIHMNLGYIMAVEKILNVDVPERAQYLRTLVAEVNRIASHLYGMGILAIFLGHSTGF 137
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+WGF +RE + + +G+R+ +Y PGGV +D+ P + E I + D
Sbjct: 138 MWGFGDREVWVEILQAITGARVTNSYIIPGGVRRDLTPAIKEMIEKAIVYQRKKIQDWYK 197
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+L N + R N+G + E+A WG G +R SG +D+RK +PY Y ++DF+IP+
Sbjct: 198 ILVNNPNIRARLENVGVMSKENAIKWGAVGPNLRASGVYYDVRKIEPYGAYDKVDFEIPM 257
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
K GD Y R LVR EM +S++I+ Q + ++ N +S K +PP R +K+ E
Sbjct: 258 YKEGDAYARTLVRFEEMEQSMRILEQVIKQIPDGNI---LSDRFFKQIPPVR--LKKWWE 312
Query: 310 SLIH-HFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
F Y + P GE + VEA +GE Y+ISDG KPYR ++ P Y +
Sbjct: 313 GQRRVVFPGYYASFRPPKGEAISRVEAGRGELAYYIISDGSPKPYRLRMITPSYRLIYVF 372
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ LCKG + AD+ AI GSLD E DR
Sbjct: 373 KELCKGARYADLVAIYGSLDYFPPEADR 400
>gi|323700402|ref|ZP_08112314.1| NADH-ubiquinone oxidoreductase chain 49kDa [Desulfovibrio sp.
ND132]
gi|323460334|gb|EGB16199.1| NADH-ubiquinone oxidoreductase chain 49kDa [Desulfovibrio
desulfuricans ND132]
Length = 359
Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats.
Identities = 120/389 (30%), Positives = 185/389 (47%), Gaps = 32/389 (8%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
+ I FGPQHP + L L+++ EIV+ P +G +HRG EKL E + F Q + +R
Sbjct: 3 TTVIPFGPQHPVLPEPVHLTLKVEDEIVKEAIPALGYVHRGLEKLCEIRDFNQMINVCER 62
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ + M Y+ +E+L+GIE+ R +L+RV++SE+ R SHLL + A G
Sbjct: 63 VCGICSMIHGTCYSECIEELMGIEVTDRAKLLRVIWSELHRAHSHLLWLGLFADAFGFEA 122
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
+ ++ RE++M E +GSR+ + GGV D+ PE + I D + I
Sbjct: 123 LFMQFWKIRERIMDINEATTGSRVIVSVNVIGGVRTDLSPEQIRWILSEIDIVEKEVKAI 182
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
D L + R V IG + E AW G +G +RGSG A D+R Y YS LDF+
Sbjct: 183 QDTLMNEYTVRARTVGIGVMTKEQAWELGAAGPTLRGSGVAQDMR-MLGYGGYSFLDFEP 241
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
+ GD + R +VR E+ +S+ ++RQ + +L V +
Sbjct: 242 VVETSGDSWARGMVRFREVLQSIDLVRQAIAKLPEGELAVKVKGN--------------- 286
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
P GEVY VE P+GE Y+ +G R +IR P +A++
Sbjct: 287 ----------------PPEGEVYHRVEQPRGECVYYIRGNGTKNLDRLRIRTPTFANIPP 330
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + +LADV I+ S+D +R
Sbjct: 331 LLAMLPECELADVPVIVLSIDPCISCTER 359
>gi|160886846|ref|ZP_02067849.1| hypothetical protein BACOVA_04860 [Bacteroides ovatus ATCC 8483]
gi|156107257|gb|EDO09002.1| hypothetical protein BACOVA_04860 [Bacteroides ovatus ATCC 8483]
Length = 530
Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats.
Identities = 144/390 (36%), Positives = 213/390 (54%), Gaps = 29/390 (7%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+ +N GPQHPA HGV+R + L+GEI+ ++D + G +HRG EK+ E+ T+ Q + D
Sbjct: 170 EEYVVNIGPQHPATHGVMRFRVSLEGEIIRKIDANCGYIHRGIEKMNESLTYPQTLALTD 229
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDY+ HA + +EK +G+E+ R + IR + E+ RI SHLL + AMD+GAL
Sbjct: 230 RLDYLGAHQNRHALCMCIEKAMGVEVSERVKYIRTIMDELQRIDSHLLFYSCLAMDLGAL 289
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
T +GF +REK++ +E G R+ Y GGV D+ P V+ + + +++
Sbjct: 290 TAFFYGFRDREKILDIFEETCGGRLIMNYNTIGGVQADLHPNFVKRVKEFIPYMRGIIHE 349
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
D+ TGN I + R +G + EDA +G +G R SG A D+RK PY Y ++DF
Sbjct: 350 YHDIFTGNIIAQSRMKGVGVLSREDAISFGCTGGTGRASGWACDVRKRMPYGVYDKVDFK 409
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ GDC+ RYLVRM E+ ES+ II Q ++ + GP I+
Sbjct: 410 EIVYTEGDCFARYLVRMDEIMESLNIIEQLIDNI----PEGPYQEKMKPII--------- 456
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
VP G YAAVE +GEFGV+L S G PYR RA G +
Sbjct: 457 ----------------RVPEGSYYAAVEGSRGEFGVFLESQGDKMPYRLHYRATGLPLVA 500
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A++ +C+G ++AD+ AI G++D V ++DR
Sbjct: 501 AIDTICRGTKIADLIAIGGTIDYVVPDIDR 530
>gi|303247495|ref|ZP_07333767.1| NADH dehydrogenase (quinone) [Desulfovibrio fructosovorans JJ]
gi|302491191|gb|EFL51083.1| NADH dehydrogenase (quinone) [Desulfovibrio fructosovorans JJ]
Length = 385
Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats.
Identities = 148/390 (37%), Positives = 215/390 (55%), Gaps = 29/390 (7%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
++ GPQHP+ HGVLR++LELDGE + R +P +G +HR E + E KT++Q +P
Sbjct: 25 DKLVLSLGPQHPSTHGVLRIMLELDGEYIVRAEPVLGYIHRMHEWMAEQKTYMQFMPNMG 84
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+DY+ PM A+A AVE+L+G+E+P R + IRV +E+ RI SHLL +D+GA
Sbjct: 85 RVDYLHPMAWNWAWAGAVERLMGLEVPERAEYIRVAVTELNRISSHLLWWGAYLLDLGAF 144
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP ++ F++RE+++ + +GSR+ +YF GGV+ D+P + + S L
Sbjct: 145 TPIMYAFDDREQILDILQDVTGSRLTYSYFTIGGVYGDVPADFASRCLAFTRRLRSRLPM 204
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
DL+T N I + R IG + +E A +G +G +IRGSGA D R+++PY Y+ DF
Sbjct: 205 YRDLVTDNVILRGRCEGIGVMDVELARRYGATGPVIRGSGAPVDTRRAEPYGVYNRFDFR 264
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
IP GD RY+VR+ E+ S II Q V L
Sbjct: 265 IPNYPEGDAMARYMVRLDELVTSCDIIDQAVQDLPEGPIQT------------------- 305
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+ P GE AVE +G+ +++ SDGG KPYR K+RAPG+ +L
Sbjct: 306 ----------KVAKTLKPPKGEASFAVEGARGKILIHVRSDGGPKPYRVKLRAPGFTNLN 355
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
L +G LAD +ILGSLD+V E+DR
Sbjct: 356 VFSELAEGTLLADAVSILGSLDLVIPEIDR 385
>gi|218700945|ref|YP_002408574.1| hydrogenase 4 subunit [Escherichia coli IAI39]
gi|218370931|emb|CAR18750.1| hydrogenase 4, subunit [Escherichia coli IAI39]
Length = 555
Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats.
Identities = 109/398 (27%), Positives = 172/398 (43%), Gaps = 34/398 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 158 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 217
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 218 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 277
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E +GSR GGV +DI E
Sbjct: 278 CHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 337
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A + G +IRGSG A DLR PY
Sbjct: 338 MHADVSELVEMLLATPNMEQRTQGIGILDRQIARDYSPVGPLIRGSGFARDLRFDHPYAD 397
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 398 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 442
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 443 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 485
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 486 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523
>gi|157157080|ref|YP_001463809.1| hydrogenase-4, G subunit [Escherichia coli E24377A]
gi|193068366|ref|ZP_03049329.1| hydrogenase-4, G subunit [Escherichia coli E110019]
gi|300817748|ref|ZP_07097963.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
107-1]
gi|157079110|gb|ABV18818.1| hydrogenase-4, G subunit [Escherichia coli E24377A]
gi|192958318|gb|EDV88758.1| hydrogenase-4, G subunit [Escherichia coli E110019]
gi|300529736|gb|EFK50798.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
107-1]
Length = 571
Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats.
Identities = 109/398 (27%), Positives = 172/398 (43%), Gaps = 34/398 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGNSGARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E +GSR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A + G +IRGSG A DLR PY
Sbjct: 354 MRADVSELVEMLLAMPNMEQRTQGIGILDRQIARDYSPVGPLIRGSGFARDLRFDHPYAD 413
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 414 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 458
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 459 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 501
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 502 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 539
>gi|325105664|ref|YP_004275318.1| NADH dehydrogenase subunit D [Pedobacter saltans DSM 12145]
gi|324974512|gb|ADY53496.1| NADH dehydrogenase subunit D [Pedobacter saltans DSM 12145]
Length = 411
Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats.
Identities = 142/394 (36%), Positives = 214/394 (54%), Gaps = 1/394 (0%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
D + T+N GP HPA HGV + +L++DGE + IG +HR EK+ E + F Q
Sbjct: 18 DDPQIELHTLNLGPTHPATHGVFQNVLQMDGERIVSGVSTIGYIHRAFEKIAEHRPFYQI 77
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
P DRL+Y + + + VEKLL I++P R +RV+ E+ RI H++ +
Sbjct: 78 TPLTDRLNYCSSPINNMGWHMTVEKLLDIKMPKRVDYMRVIVMELSRISDHIICNGILGV 137
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D GA + L+ E+RE++ YE G+R+ R GG ++ + I + SFP
Sbjct: 138 DTGAFSGFLYLMEKREEIYEIYEEICGARLTTNIGRIGGFERNFNDIAFDKIRKFVKSFP 197
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
L + L NRIF +R + V E A + +SG ++R +G +D+R ++PY Y
Sbjct: 198 PVLEEFETLFNRNRIFIERTSGVAAVDPETALSYSWSGPILRATGVDYDVRANEPYSSYE 257
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ DF+IP+G GD YDR+LVR EM++S++II Q + ++ K A P P +
Sbjct: 258 DFDFEIPVGTTGDVYDRFLVRNEEMKQSIRIIEQALEKI-AKEPKDIFHADVPDFYLPPK 316
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +ME+LI+HFK+ P EVY AVE GE G YLI+DGG PYR R P
Sbjct: 317 EQVYNNMEALIYHFKIVMGEVETPKTEVYHAVEGGNGELGFYLINDGGRTPYRLHFRRPS 376
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ + Q + +G QLAD + SL+++ GE+D
Sbjct: 377 FINYQMYAPMSRGMQLADAIINMSSLNVIAGELD 410
>gi|218555013|ref|YP_002387926.1| hydrogenase 4 subunit [Escherichia coli IAI1]
gi|218361781|emb|CAQ99378.1| hydrogenase 4, subunit [Escherichia coli IAI1]
Length = 555
Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats.
Identities = 109/398 (27%), Positives = 172/398 (43%), Gaps = 34/398 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 158 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 217
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 218 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 277
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E +GSR GGV +DI E
Sbjct: 278 CHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 337
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A + G +IRGSG A DLR PY
Sbjct: 338 MRADVSELVEMLLAMPNMEQRTQGIGILDRQIARDYSPVGPLIRGSGFARDLRFDHPYAD 397
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 398 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 442
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 443 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 485
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 486 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523
>gi|218548079|ref|YP_002381870.1| hydrogenase 4 subunit [Escherichia fergusonii ATCC 35469]
gi|218355620|emb|CAQ88231.1| hydrogenase 4, subunit [Escherichia fergusonii ATCC 35469]
Length = 571
Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats.
Identities = 108/398 (27%), Positives = 171/398 (42%), Gaps = 34/398 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGDSDARVIPIGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGI +P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTTSVENALGIVVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E +GSR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A + G +IRGSG A DLR PY
Sbjct: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQIARDYSPVGPLIRGSGFARDLRFDHPYAD 413
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 414 YGNIPKTLFTFSGGDVFSRVMVRVKETFDSLAMLEYALDNMPNTP--------------- 458
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 459 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 501
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 502 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 539
>gi|82777868|ref|YP_404217.1| hydrogenase 4 subunit [Shigella dysenteriae Sd197]
gi|309784777|ref|ZP_07679410.1| hydrogenase-4 component G [Shigella dysenteriae 1617]
gi|81242016|gb|ABB62726.1| hydrogenase 4 subunit [Shigella dysenteriae Sd197]
gi|308927147|gb|EFP72621.1| hydrogenase-4 component G [Shigella dysenteriae 1617]
Length = 571
Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats.
Identities = 109/398 (27%), Positives = 171/398 (42%), Gaps = 34/398 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E +GSR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++ + ++L +QR IG + + A + G +IRGSG A DLR PY
Sbjct: 354 IRADVSVLVEMLFATPNMEQRTQGIGILDRQIARDYSPVGPLIRGSGFARDLRFDHPYAD 413
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 414 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 458
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 459 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 501
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 502 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 539
>gi|299148404|ref|ZP_07041466.1| NADH dehydrogenase I, B/C/D subunits [Bacteroides sp. 3_1_23]
gi|298513165|gb|EFI37052.1| NADH dehydrogenase I, B/C/D subunits [Bacteroides sp. 3_1_23]
Length = 530
Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats.
Identities = 144/390 (36%), Positives = 213/390 (54%), Gaps = 29/390 (7%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+ +N GPQHPA HGV+R + L+GEI+ ++D + G +HRG EK+ E+ T+ Q + D
Sbjct: 170 EEYVVNIGPQHPATHGVMRFRVSLEGEIIRKIDANCGYIHRGIEKMNESLTYPQTLALTD 229
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDY+ HA + +EK +G+E+ R + IR + E+ RI SHLL + AMD+GAL
Sbjct: 230 RLDYLGAHQNRHALCMCIEKAMGVEVSERVKYIRTIMDELQRIDSHLLFYSCLAMDLGAL 289
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
T +GF +REK++ +E G R+ Y GGV D+ P V+ + + +++
Sbjct: 290 TAFFYGFRDREKILDIFEETCGGRLIMNYNTIGGVQADLHPNFVKRVKEFIPYMRGIIHE 349
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
D+ TGN I + R +G + EDA +G +G R SG A D+RK PY Y ++DF
Sbjct: 350 YHDIFTGNIIAQSRMKGVGVLSREDAISFGCTGGTGRASGWACDVRKRMPYGVYDKVDFK 409
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ GDC+ RYLVRM E+ ES+ II Q ++ + GP I+
Sbjct: 410 EIVYTEGDCFARYLVRMDEIMESLNIIEQLIDNI----PEGPYQEKMKPII--------- 456
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
VP G YAAVE +GEFGV+L S G PYR RA G +
Sbjct: 457 ----------------RVPEGSYYAAVEGSRGEFGVFLESQGDKMPYRLHYRATGLPLVA 500
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A++ +C+G ++AD+ AI G++D V ++DR
Sbjct: 501 AIDTICRGTKIADLIAIGGTIDYVVPDIDR 530
>gi|261345091|ref|ZP_05972735.1| hydrogenase-4 component G [Providencia rustigianii DSM 4541]
gi|282566775|gb|EFB72310.1| hydrogenase-4 component G [Providencia rustigianii DSM 4541]
Length = 577
Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats.
Identities = 105/397 (26%), Positives = 165/397 (41%), Gaps = 32/397 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
++ K++S + GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 180 INDSKTQSRVVPIGPLHITSDEPGHFRLFVDGERIVDADYRMFYVHRGMEKLAETRMGYN 239
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGI +P R IR + E+ R+ SHLLN+
Sbjct: 240 EVTFLSDRVCGICGFTHSVAYTSSVENALGIYVPPRAHTIRSVLLEVERLHSHLLNIGLA 299
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
+ G T + F REK M E +G+R GGV +D E
Sbjct: 300 SHFTGFDTGFMQFFRVREKSMTMAELLTGARKTYGTNLIGGVRRDFLKEQRVKTIQLVKE 359
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ + D+L +QR V +G + + A + G MIR SG D+R P+
Sbjct: 360 MRQDVTQLVDMLLSTPNMEQRTVGVGRLDPKVARDYSPVGPMIRASGFKRDVRFDHPFAD 419
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y L + D Y R +VR+ E +S+ +I ++ + GP+ P
Sbjct: 420 YGNLPKTLFTLDGCDVYSRVMVRIKETLDSLSMIEYALDNMPD----GPILTEGFTYQPH 475
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
K A EAP+GE + + K YR + RA
Sbjct: 476 KFAL---------------------------GYTEAPRGEDVHWSMLGDNQKLYRWRCRA 508
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 509 ATYANWPVLRYMLQGNTVSDAPLIIGSLDPCYSCTDR 545
>gi|168698932|ref|ZP_02731209.1| NADH dehydrogenase (ubiquinone) [Gemmata obscuriglobus UQM 2246]
Length = 429
Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats.
Identities = 148/418 (35%), Positives = 228/418 (54%), Gaps = 28/418 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGVLRL+L DGE++ V PH+G LHR EK+ E T +Q +PY
Sbjct: 14 RTDEMLVNMGPQHPSTHGVLRLVLRTDGEVITEVTPHLGYLHRCAEKIGENVTPIQFIPY 73
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY+A MN ++LAVEKL G+++P + Q+IRVL E+ RI SHL+ + +D+G
Sbjct: 74 TDRMDYLAAMNMNLGFSLAVEKLCGLKVPEKAQVIRVLIGELNRIASHLVGMGAYGLDLG 133
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
+P L+ F ERE ++ +E G+R+ +Y GG H D+PP+ + + F +
Sbjct: 134 TFSPFLYAFREREHILDLFEDVCGARLTYSYLTIGGAHDDLPPDFTARVRAFVSYFKPRI 193
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGS------GAAWDLRKSQPYE 238
+ LLT N IF +R IG + E A +G +G M+R S WDLRK++PY
Sbjct: 194 PEYHALLTDNHIFVKRTAAIGVLTKEMALDYGCTGPMLRASLDRTKGDPPWDLRKTEPYS 253
Query: 239 CYSELDFDIPIGKH---------GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPV 289
Y + FD+P+ GDC+ R+ +RM+E+ E++KI+ Q R + G
Sbjct: 254 GYEQYTFDVPLPPFDRAPPGAVVGDCWHRFYIRMLEVVEAIKIVEQAAARYDALHAEGEK 313
Query: 290 SASDPKIVPPKRAD---------MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEF 340
+ ++ + P + + M + H H+ GE Y E P+G+
Sbjct: 314 TKAEFAVRKPTLSADDAKADDATLAELMRTRYAH--RVEPPRHLSPGECYVETECPRGQM 371
Query: 341 GVYLISD--GGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G +++ N P R + R+ +A+L LCK +ADV AI+GS+D+V GE+DR
Sbjct: 372 GFHIVGRPAKENVPLRVRARSSCFANLSVAGELCKRCLVADVPAIVGSIDVVMGEIDR 429
>gi|118581924|ref|YP_903174.1| NADH dehydrogenase (ubiquinone) [Pelobacter propionicus DSM 2379]
gi|118504634|gb|ABL01117.1| ech hydrogenase subunit E [Pelobacter propionicus DSM 2379]
Length = 409
Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats.
Identities = 115/389 (29%), Positives = 176/389 (45%), Gaps = 31/389 (7%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
TI GPQHPA + + GE + +G HRG EK E +++LQ + +R
Sbjct: 3 PVTIPIGPQHPALKEPANFSITVTGEKIVTTSMRLGYNHRGIEKACEERSYLQCLYLLER 62
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ + AY AVE++ G+ IP R IR L E+ RI SHLL + ++G T
Sbjct: 63 ICGICSHTHSTAYIQAVEEIAGLTIPPRANYIRSLVGELERIHSHLLWLGVAGHEIGFDT 122
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
++ + +RE +M G+R++ GGV +DI PE +E I ++
Sbjct: 123 LLMYSWRDRELVMDILAELGGNRVNYGINTLGGVRRDITPEQIEMIRNSVNTLEERTKYY 182
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
++ T R +G + EDA G +R S D+R+ PY Y LDF +
Sbjct: 183 IEVATEEPTLAARLAGVGYLSHEDALLLSAVGPTLRASNVDRDIRRDDPYAAYGSLDFRV 242
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
H D Y R LVR+ E+ ES ++IRQ +N L
Sbjct: 243 ITDDHCDVYGRTLVRVGELMESFRMIRQILNELPEGEVS--------------------- 281
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
+P GE + EAP+GE Y+ ++G +KP R K+RA +A++QA
Sbjct: 282 ----------VKAPRKIPAGEACSRYEAPRGECFHYIRANGTDKPERVKVRASTFANIQA 331
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + + + LADV I+ ++D F DR
Sbjct: 332 VAKMMENNNLADVPIIVAAIDPCFSCADR 360
>gi|325496482|gb|EGC94341.1| hydrogenase 4, subunit [Escherichia fergusonii ECD227]
Length = 571
Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats.
Identities = 108/398 (27%), Positives = 171/398 (42%), Gaps = 34/398 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGDSDARVIPIGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGI +P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTTSVENALGIVVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E +GSR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A + G +IRGSG A DLR PY
Sbjct: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQIARDYSPVGPLIRGSGFARDLRFDHPYAD 413
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 414 YGNIPKTLFTFSGGDVFSRVMVRVKETFDSLAMLEYALDNMPNTP--------------- 458
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 459 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 501
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 502 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 539
>gi|108804467|ref|YP_644404.1| NADH dehydrogenase (ubiquinone) [Rubrobacter xylanophilus DSM 9941]
gi|108765710|gb|ABG04592.1| NADH dehydrogenase (ubiquinone) [Rubrobacter xylanophilus DSM 9941]
Length = 358
Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats.
Identities = 156/386 (40%), Positives = 218/386 (56%), Gaps = 30/386 (7%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
+N GPQHPA HG+LRLILELDGE + R DP +G LHR EK+ E +T+ +P DRLDY
Sbjct: 1 MNMGPQHPAMHGLLRLILELDGETIVRCDPVMGYLHRCQEKIAENRTYPAVIPLTDRLDY 60
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
A M+ EH Y LAVE LLG+EIP R + IRVL E+ RI SHL ++ +++GA TP L
Sbjct: 61 FANMHNEHGYCLAVEDLLGVEIPPRAEYIRVLMCELMRIASHLPSIGFLLLELGAFTPIL 120
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN-DISD 189
+ F ERE++ F+E +G+RM Y R GGV D+PP++ E I + + + D D
Sbjct: 121 YAFRERERIQNFFEAVTGARMMFHYIRIGGVKADLPPDIPEKIWEYVEGLEKRIKPDFID 180
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
L+ GN IF +R I + E+A G +G +R +G A+D+R+ PY Y ELDF++
Sbjct: 181 LIEGNEIFIERTRGISRLTQEEAIELGLTGPPLRCTGVAFDVRRDYPYSVYPELDFEVVT 240
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD Y VR+ E+ ES+KIIRQC+ ++ +G V
Sbjct: 241 DTAGDVEASYRVRIKEVYESIKIIRQCLEKMPEGEVMGDVGRR----------------- 283
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
P GE + VE P+GEF V+++SDG + PYR R P + ++Q ++
Sbjct: 284 ------------VRPPEGEGFGRVEGPRGEFAVHVVSDGSDTPYRVHYRDPSFVNMQLLQ 331
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
GH L D+ I+G +D V G D
Sbjct: 332 EKMPGHYLPDIMPIMGLVDPVSGGWD 357
>gi|320180471|gb|EFW55402.1| Hydrogenase-4 component G [Shigella boydii ATCC 9905]
Length = 571
Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats.
Identities = 108/398 (27%), Positives = 171/398 (42%), Gaps = 34/398 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HR EKL ET+ +
Sbjct: 174 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRDMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E +GSR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A + G +IRGSG A DLR PY
Sbjct: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQIARDYSPVGPLIRGSGFARDLRFDHPYAD 413
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 414 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 458
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 459 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 501
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 502 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 539
>gi|160879877|ref|YP_001558845.1| NADH-ubiquinone oxidoreductase chain 49kDa [Clostridium
phytofermentans ISDg]
gi|160428543|gb|ABX42106.1| NADH-ubiquinone oxidoreductase chain 49kDa [Clostridium
phytofermentans ISDg]
Length = 359
Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats.
Identities = 107/391 (27%), Positives = 181/391 (46%), Gaps = 33/391 (8%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ + FGPQHP + L L L+ E V P IG +HRG EKL+E K F+Q
Sbjct: 2 GKRTVVPFGPQHPVLPEPIHLDLVLEDETVVEAIPRIGYIHRGLEKLVEKKDFMQYTYVA 61
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
+R+ + Y + +E ++ +EIP R + +R +++E+ R+ SH L + A G
Sbjct: 62 ERICGICSFMHGMGYCMTIESIMNVEIPERAKFLRTIWAELSRMHSHTLWLGLLADAFGF 121
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ + ++ RE+++ +E +G R+ + GGV +DI E + I + L
Sbjct: 122 ESLFMHSWKIREQILDIFEETTGGRVIFSVCDVGGVRKDINAETLTKIVTILNKVEKELK 181
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+++D+ + K R +G + E A+ G +G M R SG D+R Q Y Y +L F
Sbjct: 182 ELTDVFLNDSSVKSRTKGVGVLTKEQAYDLGAAGPMARASGVEADMR-CQGYAAYDKLKF 240
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
I GD Y R VR+ E+ +S+ +IRQCV + + V+ +
Sbjct: 241 KPIIDTAGDSYARTSVRIGEIFQSIDLIRQCVELIPEGDIKVKVTGN------------- 287
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
P GE + +E P+GE Y ++G R ++R P +A++
Sbjct: 288 -------------------PSGEYFTRIEQPRGEVVYYAKANGSKFLDRLRVRTPTFANV 328
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ KG LADV ++ ++D +R
Sbjct: 329 PSLLETLKGCDLADVPILVLTIDPCISCTER 359
>gi|332701741|ref|ZP_08421829.1| NADH dehydrogenase (quinone) [Desulfovibrio africanus str. Walvis
Bay]
gi|332551890|gb|EGJ48934.1| NADH dehydrogenase (quinone) [Desulfovibrio africanus str. Walvis
Bay]
Length = 358
Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats.
Identities = 107/389 (27%), Positives = 179/389 (46%), Gaps = 33/389 (8%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
I FGPQHP + L L ++ EIV+ P IG +HRG EKL + + + Q + +R
Sbjct: 3 RTIIPFGPQHPVLPEPIHLKLVVEDEIVKEALPAIGYVHRGLEKLADIRDYNQMIQIVER 62
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ + M Y +E+++ +E P R + +RV++SE+ R+ SHLL + A G
Sbjct: 63 VCGICSMIHAMCYCQGLEEMMKVEAPSRAKFLRVIWSELHRMHSHLLWLGLFADAFGFEA 122
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
+ ++ RE++M E +G+R+ + GGV +D+ PE I + + ++
Sbjct: 123 LFMQFWKIRERIMDINEATAGNRVIVSVNVVGGVRRDLSPEQCRWILKELEEVERQIKEL 182
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ + +R IG + E A G +G ++R SG A D R+ Y + ELDF
Sbjct: 183 QSTMLKDYSVCKRTKGIGVLTKEQAHELGAAGPLLRASGWAQDCRQLG-YAAFPELDFSP 241
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
GDC+ R VR ME +S+ ++RQ + +L V +
Sbjct: 242 VFHTDGDCWARGWVRFMETLQSIDLVRQAIAKLPQGELAAKVKGN--------------- 286
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
P GE+ VE P+GE Y+ ++G R +IR P +A++
Sbjct: 287 -----------------PEGEIVTRVEQPRGELLYYIKANGKKNLERLRIRTPTFANVPP 329
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + G +LADV ++ S+D +R
Sbjct: 330 LLAMLPGVELADVPVVVLSIDPCISCTER 358
>gi|297192923|ref|ZP_06910321.1| NADH dehydrogenase subunit I D [Streptomyces pristinaespiralis ATCC
25486]
gi|197722671|gb|EDY66579.1| NADH dehydrogenase subunit I D [Streptomyces pristinaespiralis ATCC
25486]
Length = 383
Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats.
Identities = 130/394 (32%), Positives = 207/394 (52%), Gaps = 28/394 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
++ +N GPQHP+ HGVLRL L LDGE + + +P +G +HRG EKL E + + Q V
Sbjct: 15 AENTDMVLNIGPQHPSTHGVLRLRLVLDGERIRQAEPIVGYMHRGAEKLFEARDYRQIVV 74
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+R D+++ + E +AVE++LG+E+P R R L +E+ R+L+HL+ + + +++
Sbjct: 75 LANRHDWLSAFSNELGVVMAVERMLGMEVPERAVWSRTLLAELNRVLNHLMFLGSYPLEL 134
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP F ERE+L E SG RMH + R GG+ +D+P + S
Sbjct: 135 GGITPVFHAFREREELQTVMEEISGGRMHYMFNRVGGLKEDLPAGWLGRARHAVADVRSR 194
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE- 242
++ L+ GN IF+ R ++G + + +G SG + R SG +DLR+ +PY Y E
Sbjct: 195 MDVYDRLVLGNEIFRGRTRDVGVLSADAVHAFGVSGPIARASGVDFDLRRDEPYLAYPEL 254
Query: 243 -LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ + GDC R+ V + + ++ + C++R+ + GP++ PK++
Sbjct: 255 QDTLRVVTRQEGDCLARFEVLLEQTHNALDLADACLDRI-AELPPGPINQRLPKVL---- 309
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
P G YA E P G G YL+S G PYR K+R+
Sbjct: 310 ---------------------KAPEGHTYAWTENPLGINGYYLVSKGEKTPYRLKLRSAS 348
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
Y ++QA+ L G +AD+ AILGSL V G++D
Sbjct: 349 YNNIQALTVLLPGTLVADMVAILGSLFFVVGDID 382
>gi|295401605|ref|ZP_06811573.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Geobacillus
thermoglucosidasius C56-YS93]
gi|294976372|gb|EFG51982.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Geobacillus
thermoglucosidasius C56-YS93]
Length = 574
Score = 329 bits (845), Expect = 4e-88, Method: Composition-based stats.
Identities = 106/397 (26%), Positives = 175/397 (44%), Gaps = 32/397 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETK-TFL 59
++ + + GP H A L +DGE + D + +HRG EKL ET+ +
Sbjct: 176 IEVEGEGIVEVPIGPLHIANDEPGHFRLYVDGEYIIDADYRLFYVHRGIEKLAETRMDYH 235
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
Q +R+ + AYA A+E GIE+P+R Q IR + E+ R+ SHLLN+
Sbjct: 236 QVNFLVERICGICGYTHSVAYATALETANGIEVPLRAQYIRTILLEVERLHSHLLNLGVA 295
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
A VG + + F REK M E +G R GGV +DI E + +
Sbjct: 296 AHLVGFDSGFMHFFRVREKSMKMAEILTGGRKTYGMNLIGGVRRDILKEERDQVLRLVSE 355
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ L+++ D++ F R +G + + A + G +RGSG A D R + PY
Sbjct: 356 MRTDLDELLDIMVNTTNFISRTKGVGRLDPKIARDYSPVGPNLRGSGFARDTRMTHPYAA 415
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + +++ D R LVR E+ +S+ II +C++ + GPV
Sbjct: 416 YDRITWNVISKDGCDVLSRQLVRAAELFQSLDIIEKCLSEM----PPGPV---------- 461
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
L+ F + EAP+GE ++++ G YR + RA
Sbjct: 462 -----------LVEGFSYKPYTF------AVGYTEAPRGENVHWVMTGSGQNVYRLRARA 504
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Y + ++ ++ +G+ ++D I+ S+D + DR
Sbjct: 505 STYNNWPSLRYMFQGNTVSDAPLIIASIDPCYSCCDR 541
>gi|282877799|ref|ZP_06286612.1| respiratory-chain NADH dehydrogenase, 49 Kd subunit [Prevotella
buccalis ATCC 35310]
gi|281300115|gb|EFA92471.1| respiratory-chain NADH dehydrogenase, 49 Kd subunit [Prevotella
buccalis ATCC 35310]
Length = 523
Score = 329 bits (845), Expect = 4e-88, Method: Composition-based stats.
Identities = 136/391 (34%), Positives = 201/391 (51%), Gaps = 29/391 (7%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
F IN GPQHP+ HGVLRL LDGE V+R+ PH+G +HRG EK+ E T+ Q +
Sbjct: 162 DNDFVINIGPQHPSTHGVLRLQSVLDGETVKRIYPHLGYIHRGMEKMCEAYTYPQTLALT 221
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DR+DY++ M HA +E+ + IE+ R Q IR + E+ RI SHLL + A D+GA
Sbjct: 222 DRMDYLSAMMNRHALVGVIEEAMEIELTERIQYIRTIMDELQRIDSHLLYLGCCAQDLGA 281
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
LT L+ +RE ++ E +G R+ Y+R GG DI P VE+ C L
Sbjct: 282 LTAFLYSMRDREHVLNVMEETTGGRLIQNYYRIGGCQDDIDPNFVENTKKLCAYLKPMLQ 341
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ D+ N I +QR I + LE+ +G +G R SG D+RK PY Y +++F
Sbjct: 342 EYMDVFGDNVIMQQRFKGIAPMSLENIISYGVTGASGRASGWKNDVRKYHPYAMYDKVEF 401
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ + +H D + RYL R+ E+++S++II Q ++ + +
Sbjct: 402 EEVLNEHCDSFGRYLNRIEEIKQSIRIIEQLIDNIPAGDFYVKQK--------------- 446
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
VP G+ Y + E +GE GVYL S G PYR K R G H+
Sbjct: 447 --------------PIIKVPEGQWYFSCEGSRGEIGVYLDSKGDKMPYRLKFRPMGLNHV 492
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AM+ + +G ++AD+ +LD V ++DR
Sbjct: 493 AAMDEMLRGQKIADLVTAGAALDFVIPDIDR 523
>gi|255007684|ref|ZP_05279810.1| putative NADH-quinone oxidoreductase chain C/D [Bacteroides
fragilis 3_1_12]
gi|313145379|ref|ZP_07807572.1| NADH dehydrogenase subunit I [Bacteroides fragilis 3_1_12]
gi|313134146|gb|EFR51506.1| NADH dehydrogenase subunit I [Bacteroides fragilis 3_1_12]
Length = 530
Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats.
Identities = 141/392 (35%), Positives = 210/392 (53%), Gaps = 29/392 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
R + +N GPQHPA HGV+R + L+GE + ++D + G +HRG EK+ E+ T+ Q +
Sbjct: 168 DDREYVVNIGPQHPATHGVMRFRVSLEGETIRKLDANCGYIHRGIEKMNESLTYPQTLAL 227
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDY+ HA + +EK +GIE+ R + IR + E+ RI SHLL + AMD+G
Sbjct: 228 TDRLDYLGAHQNRHALCMCIEKAMGIEVSERVKYIRTIMDELQRIDSHLLFYSCLAMDLG 287
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
ALT +GF +RE ++ +E G R+ Y GGV D+ P + + + +
Sbjct: 288 ALTAFFYGFRDREMILDMFEETCGGRLIMNYNTIGGVQADLHPNFIPRVKKFIPYMRGII 347
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
++ D+ TGN I +QR +G + EDA +G +G R SG A D+RK PY Y ++D
Sbjct: 348 HEYHDVFTGNVIARQRLKGVGVLSREDAISFGCTGGTGRASGWACDVRKRMPYGVYDKVD 407
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F + GD + RY+VRM E+ ES+ II Q ++ + P + M
Sbjct: 408 FKEIVYTEGDSFARYMVRMDEIMESLNIIEQLIDNIPEG---------------PIQEKM 452
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K VP G Y AVE +GEFGV+L S G PYR R+ G
Sbjct: 453 K--------------PIIRVPEGSYYTAVEGSRGEFGVFLESHGDKTPYRLHYRSTGLPL 498
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ A++ +C+G ++AD+ AI G+LD V ++DR
Sbjct: 499 VSAVDTICRGAKIADLIAIGGTLDYVVPDIDR 530
>gi|317475240|ref|ZP_07934507.1| respiratory-chain NADH dehydrogenase [Bacteroides eggerthii
1_2_48FAA]
gi|316908693|gb|EFV30380.1| respiratory-chain NADH dehydrogenase [Bacteroides eggerthii
1_2_48FAA]
Length = 530
Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats.
Identities = 147/391 (37%), Positives = 213/391 (54%), Gaps = 29/391 (7%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ +N GPQHPA HGV+R + L+GEI+E++D + G +HRG EK+ E+ T+ Q +
Sbjct: 169 DDEYVVNIGPQHPATHGVMRFRVSLEGEIIEKIDANCGYIHRGIEKMCESLTYPQTLALT 228
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DRLDY+ HA + +E+ +GIE+ R Q IR + E+ RI SHLL + AMD+GA
Sbjct: 229 DRLDYLGAHQNRHALCMCIEQAMGIEVSERVQYIRTIMDELQRIDSHLLFYSCLAMDLGA 288
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
LT +GF +REK++ +E G R+ Y GGV DI P+ + + + L+
Sbjct: 289 LTAFFYGFRDREKILDIFEGTCGGRLIMNYNTIGGVQADIAPDFQKKVKEFIPYLRGILH 348
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ D+ TGN I +QR +G + EDA +G +G R SG A D+RK PY YS++DF
Sbjct: 349 EYHDVFTGNIIAQQRLKGVGVLSREDAIAFGATGGTGRASGWACDVRKRMPYSMYSKVDF 408
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
I GD + RYL+RM E+ ES+ II Q ++ + N MK
Sbjct: 409 KEVIRTEGDSWARYLIRMDEIMESLNIIEQLIDNIPEGNYQ---------------EKMK 453
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
VP G YAAVE +GEFGV+L S G PYR R+ G +
Sbjct: 454 --------------PIIRVPEGNYYAAVEGSRGEFGVFLESHGDKMPYRLHFRSTGLPLV 499
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ +C+G ++AD+ AI G+LD V ++DR
Sbjct: 500 STVDTICRGAKIADLIAIGGTLDYVVPDIDR 530
>gi|329962485|ref|ZP_08300485.1| respiratory-chain NADH dehydrogenase, subunit [Bacteroides fluxus
YIT 12057]
gi|328530041|gb|EGF56929.1| respiratory-chain NADH dehydrogenase, subunit [Bacteroides fluxus
YIT 12057]
Length = 534
Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats.
Identities = 145/391 (37%), Positives = 212/391 (54%), Gaps = 29/391 (7%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ +N GPQHPA HGV+R + L+GEI++++D + G +HRG EK+ E+ T+ Q +
Sbjct: 173 DEEYVVNIGPQHPATHGVMRFRVSLEGEIIDKIDANCGYIHRGIEKMCESLTYPQTLALT 232
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DRLDY+ HA + +EK +G+E+ R Q IR + E+ RI SHLL + AMD+GA
Sbjct: 233 DRLDYLGAHQNRHALCMCIEKAMGVEVSERVQYIRTIMDELQRIDSHLLFYSCLAMDLGA 292
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
LT +GF +REK++ +E G R+ Y GGV DI P V+ + + L+
Sbjct: 293 LTAFFYGFRDREKILDIFEETCGGRLIMNYNTIGGVQADIAPGFVKKVKEFIPYLRGILH 352
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ D+ TGN I +QR +G + EDA +G +G R SG A D+RK PY Y++++F
Sbjct: 353 EYHDVFTGNIIAQQRLKGVGVLSREDAIAFGATGGTGRASGWACDVRKRMPYAVYNKVEF 412
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
I GD + RYL+RM E+ ES+KII Q ++ + MK
Sbjct: 413 KEIIRTEGDSWARYLIRMDEILESLKIIEQLIDNIPEGAYQ---------------EKMK 457
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
VP G YAAVE +GEFGV+L S G PYR R+ G +
Sbjct: 458 --------------PIIRVPEGTYYAAVEGSRGEFGVFLESHGDKMPYRLHFRSTGLPLV 503
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +C+G ++AD+ AI G+LD V ++DR
Sbjct: 504 STVNTICRGAKIADLIAIGGTLDYVVPDIDR 534
>gi|169831263|ref|YP_001717245.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Candidatus
Desulforudis audaxviator MP104C]
gi|169638107|gb|ACA59613.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Candidatus
Desulforudis audaxviator MP104C]
Length = 358
Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats.
Identities = 105/389 (26%), Positives = 177/389 (45%), Gaps = 33/389 (8%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
T FGPQHP ++L L ++ E V V P IG +HRG EK E ++ V +R
Sbjct: 3 RMTFPFGPQHPVLPEAIQLKLTVEDERVVEVLPAIGYMHRGIEKAAERNPYINNVFLCER 62
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ + AY +E+++ +E+P R + +RV++SE+ R+ SHLL + A G +
Sbjct: 63 ICGICSFIHGMAYCQTIEEIMKVEVPPRAKYLRVMWSELSRLHSHLLWLGLLADSFGFES 122
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
+ + RE ++ E +G R+ + GGV +DI + + + ++ +
Sbjct: 123 LFMQCWRAREIVLDMLEMTTGQRVIQSTCVIGGVRRDIDADQAARLREMLKTLKPQIDAV 182
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ + K R V G + + AW G G +RGSG WD R + Y Y EL+F+
Sbjct: 183 IPVFKHDYTIKSRTVGRGVLPKDQAWTLGAVGPTLRGSGGTWDARSTG-YAAYGELEFEP 241
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
+ GD Y R +VR+ E ++ +++ + ++RL V S
Sbjct: 242 VVETDGDSYARTMVRVRETYQAYELVLKALDRLPEGETRVKVKGS--------------- 286
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
P GE VE P+GE Y + +G + R K+R P +A++ A
Sbjct: 287 -----------------PNGEAVMRVEQPRGELFYYALGNGTVRLERLKVRTPTFANIPA 329
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + G ++ADV I+ S+D +R
Sbjct: 330 LLTMLPGCEIADVPVIVLSIDPCMSCTER 358
>gi|302348180|ref|YP_003815818.1| NADH-quinone oxidoreductase subunit D [Acidilobus saccharovorans
345-15]
gi|302328592|gb|ADL18787.1| NADH-quinone oxidoreductase subunit D [Acidilobus saccharovorans
345-15]
Length = 401
Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats.
Identities = 133/392 (33%), Positives = 208/392 (53%), Gaps = 5/392 (1%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
+ + GP HP + G +R+I+ELDG+++ RVDP IG +HR EKL E + +++ +P F+R+
Sbjct: 11 YEVQIGPAHPGS-GHMRIIVELDGDVMVRVDPDIGFVHRTMEKLAEGRDWIKNIPLFERM 69
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+ N Y AVEKLL IE P R + +R L EI RI SHL + + +G T
Sbjct: 70 AILDACNITLPYVEAVEKLLDIEPPERAKYLRTLLCEINRIASHLYGMGIFGVFLGHSTL 129
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
+W F +RE + E +G+R+ +Y GGV +D+P + E+ + LN+ +
Sbjct: 130 YMWAFGDREVFVQLAEDLTGARLTHSYPVFGGVRRDMPDDFPENARKAVRYMRNRLNEYA 189
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
+ N ++R +G + A G +G R SG +D+R +PYE Y ELDF+IP
Sbjct: 190 KIFLNNPNIRKRLEGVGVISKTRAAELGIAGPNARASGIKYDVRLVEPYEAYPELDFEIP 249
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
+ + GD R +R+ E+R+S+ II Q V+ L + G + K P D+
Sbjct: 250 VFEEGDSLARAWMRVEEIRQSLNIIEQAVDWLEKHPREGFMHDKFWKAAPKLYKDVYEGN 309
Query: 309 E--SLIHHFKLY--TEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
+ + KL VP G+ A VEA +GE Y+ SDG + PYR ++ +P + +
Sbjct: 310 IPYAGKYRVKLMPLFATLKVPAGKAAARVEAGRGEMFYYVESDGKDVPYRVRVVSPSFRN 369
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ A +++ GH+L D+ I GS D E DR
Sbjct: 370 VIAFKYVMPGHRLMDLPTIYGSFDYFPPEWDR 401
>gi|330834251|ref|YP_004408979.1| NADH dehydrogenase subunit D [Metallosphaera cuprina Ar-4]
gi|329566390|gb|AEB94495.1| NADH dehydrogenase subunit D [Metallosphaera cuprina Ar-4]
Length = 392
Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats.
Identities = 136/388 (35%), Positives = 211/388 (54%), Gaps = 7/388 (1%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+N GPQHP + G +R+ ++L+G+I+E + G +HR EKL E + ++ +P +R
Sbjct: 11 ELNVGPQHPGS-GHMRIFVKLNGDIIEDAEIDPGYVHRAVEKLSENRNYIHLIPLVERPA 69
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ +N Y LAVEK+L +++P R Q +R +E+ RI SHL + A+ +G T
Sbjct: 70 ILDSVNMNLGYVLAVEKILNVDVPERAQYLRSFAAEVSRISSHLYGMGILAIFIGHSTGF 129
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+WGF +RE + E +G+R+ +Y PGGV +D+ P ++E + D
Sbjct: 130 MWGFGDREPWVQILEALTGARITNSYVIPGGVRRDLTPTVIEMTKKAIVYMRKKMKDWEK 189
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ N + R ++G + E A WG +G +RGSG +D+RK +PY YS+LDF+IP+
Sbjct: 190 IFLNNPNIRARLEDVGVMTREQAIEWGAAGPNLRGSGVYYDVRKFEPYGAYSKLDFEIPV 249
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
K GD Y R LVR E+ +S++II Q + + +S K +PP R +K+ E
Sbjct: 250 YKEGDGYARTLVRFEEIEQSLRIIEQIIRDIPQGQI---LSDRFFKQIPPTR--LKKWWE 304
Query: 310 S-LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
Y + P GE + VEA +GE Y++SDG KPYR ++ P Y + M
Sbjct: 305 GQRRIVMPGYYASFRPPKGEAISRVEAGRGELVYYVMSDGSAKPYRLRMITPSYRSIYVM 364
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ L KG + AD+ +I GSLD E DR
Sbjct: 365 KNLLKGARYADLVSIYGSLDYFPPEADR 392
>gi|312110879|ref|YP_003989195.1| NADH-ubiquinone oxidoreductase chain 49kDa [Geobacillus sp.
Y4.1MC1]
gi|311215980|gb|ADP74584.1| NADH-ubiquinone oxidoreductase chain 49kDa [Geobacillus sp.
Y4.1MC1]
Length = 574
Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats.
Identities = 106/397 (26%), Positives = 175/397 (44%), Gaps = 32/397 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETK-TFL 59
++ + + GP H A L +DGE + D + +HRG EKL ET+ +
Sbjct: 176 IEVEGEGIVEVPIGPLHIANDEPGHFRLYVDGEYIIDADYRLFYVHRGIEKLAETRMDYH 235
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
Q +R+ + AYA A+E GIE+P+R Q IR + E+ R+ SHLLN+
Sbjct: 236 QVNFLVERICGICGYTHSVAYATALETANGIEVPLRAQYIRTILLEVERLHSHLLNLGVA 295
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
A VG + + F REK M E +G R GGV +DI E + +
Sbjct: 296 AHLVGFDSGFMHFFRVREKSMKMAEILTGGRKTYGMNLIGGVRRDILKEERDQVLRLVSE 355
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ L+++ D++ F R +G + + A + G +RGSG A D R + PY
Sbjct: 356 MRTDLDELLDIMVNTTNFISRTKGVGRLDPKVARDYSPVGPNLRGSGFARDTRMTHPYAA 415
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + +++ D R LVR E+ +S+ II +C++ + GPV
Sbjct: 416 YDRITWNVISKDGCDVLSRQLVRAAELFQSLDIIEKCLSEM----PPGPV---------- 461
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
L+ F + EAP+GE ++++ G YR + RA
Sbjct: 462 -----------LVEGFSYKPYTF------AVGYTEAPRGENVHWVMTGSGQNVYRLRARA 504
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Y + ++ ++ +G+ ++D I+ S+D + DR
Sbjct: 505 STYNNWPSLRYMFQGNTVSDAPLIIASIDPCYSCCDR 541
>gi|282881433|ref|ZP_06290107.1| respiratory-chain NADH dehydrogenase, 49 Kd subunit [Prevotella
timonensis CRIS 5C-B1]
gi|281304659|gb|EFA96745.1| respiratory-chain NADH dehydrogenase, 49 Kd subunit [Prevotella
timonensis CRIS 5C-B1]
Length = 523
Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats.
Identities = 135/391 (34%), Positives = 200/391 (51%), Gaps = 29/391 (7%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
F IN GPQHP+ HGVLRL LDGE V+ + PH+G +HRG EK+ E T+ Q +
Sbjct: 162 DNDFVINIGPQHPSTHGVLRLQSVLDGETVKHIYPHLGYIHRGMEKMCEAYTYPQTLALT 221
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DR+DY++ M HA +E+ + IE+ R Q IR + E+ RI SHLL + A D+GA
Sbjct: 222 DRMDYLSAMMNRHALVGVIEEAMEIELTERIQYIRTIMDELQRIDSHLLYLGCCAQDLGA 281
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
LT L+ +RE ++ E +G R+ Y+R GG DI P VE+ C L
Sbjct: 282 LTAFLYSMRDREHVLNIMEETTGGRLIQNYYRIGGCQDDIDPNFVENTKKLCAYLKPMLQ 341
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ D+ N I +QR I + LE+ +G +G R SG D+RK PY Y +++F
Sbjct: 342 EYLDVFGDNVIMQQRFKGIAPMNLENIISYGVTGASGRASGWKNDVRKYHPYAMYDKVEF 401
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ + +H D + RYL R+ E+++S++II Q ++ + +
Sbjct: 402 EEVLNEHCDSFGRYLNRIEEIKQSIRIIEQLIDNIPAGDFYVKQK--------------- 446
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
VP G+ Y + E +GE GVYL S G PYR K R G H+
Sbjct: 447 --------------PIIKVPEGQWYFSCEGSRGEIGVYLDSKGDKMPYRLKFRPMGLNHV 492
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AM+ + +G ++AD+ +LD V ++DR
Sbjct: 493 AAMDEMLRGQKIADLVTAGAALDFVIPDIDR 523
>gi|319901164|ref|YP_004160892.1| NADH dehydrogenase subunit D; NADH dehydrogenase subunit C
[Bacteroides helcogenes P 36-108]
gi|319416195|gb|ADV43306.1| NADH dehydrogenase subunit D; NADH dehydrogenase subunit C
[Bacteroides helcogenes P 36-108]
Length = 529
Score = 329 bits (844), Expect = 5e-88, Method: Composition-based stats.
Identities = 142/391 (36%), Positives = 209/391 (53%), Gaps = 29/391 (7%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ +N GPQHPA HGV+R + L+GE +E++D + G +HRG EK+ E+ T+ Q +
Sbjct: 168 DEEYVVNIGPQHPATHGVMRFRVSLEGETIEKIDANCGYIHRGIEKMCESLTYPQTLALT 227
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DRLDY+ HA + +EK +GIE+ R Q IR + E+ RI SHLL + AMD+GA
Sbjct: 228 DRLDYLGAHQNRHALCMCIEKAMGIEVSQRVQYIRTIMDELQRIDSHLLFYSCLAMDLGA 287
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
LT +GF +REK++ +E G R+ Y GG+ DI P + + + L+
Sbjct: 288 LTAFFYGFRDREKILDIFEETCGGRLIMNYNTIGGLQADIAPGFAKKVKDFIPYLRGILH 347
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ ++ TGN I +QR +G + DA +G +G R SG A D+RK PY Y +++F
Sbjct: 348 EYHEIFTGNIIARQRLKGVGILSRADAIAFGATGGTGRASGWACDVRKRIPYGVYDKVEF 407
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ GD + RYLVRM E+ ES+KII Q ++ + MK
Sbjct: 408 TEIVRTEGDSWARYLVRMDEILESLKIIEQLIDNIPEGAYQ---------------EKMK 452
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
VP G YAAVE +GEFGV+L S G PYR R+ G +
Sbjct: 453 --------------PIIRVPEGSYYAAVEGSRGEFGVFLESHGDKTPYRMHFRSTGLPLV 498
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ +C+G ++AD+ AI G+LD V ++DR
Sbjct: 499 STVDTICRGAKIADLIAIGGTLDYVVPDIDR 529
>gi|53712160|ref|YP_098152.1| NADH dehydrogenase I chain D [Bacteroides fragilis YCH46]
gi|60680344|ref|YP_210488.1| putative NADH-quinone oxidoreductase chain C/D [Bacteroides
fragilis NCTC 9343]
gi|253563802|ref|ZP_04841259.1| NADH-quinone oxidoreductase subunit C/D [Bacteroides sp. 3_2_5]
gi|81316586|sp|Q5LH50|NUOCD_BACFN RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|81383456|sp|Q64Y08|NUOCD_BACFR RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|52215025|dbj|BAD47618.1| NADH dehydrogenase I chain D [Bacteroides fragilis YCH46]
gi|60491778|emb|CAH06536.1| putative NADH-quinone oxidoreductase chain C/D [Bacteroides
fragilis NCTC 9343]
gi|251947578|gb|EES87860.1| NADH-quinone oxidoreductase subunit C/D [Bacteroides sp. 3_2_5]
gi|301161877|emb|CBW21421.1| putative NADH-quinone oxidoreductase chain C/D [Bacteroides
fragilis 638R]
Length = 530
Score = 329 bits (844), Expect = 5e-88, Method: Composition-based stats.
Identities = 141/392 (35%), Positives = 211/392 (53%), Gaps = 29/392 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
R + +N GPQHPA HGV+R + L+GE ++++D + G +HRG EK+ E+ T+ Q +
Sbjct: 168 DDREYVVNIGPQHPATHGVMRFRVSLEGETIKKLDANCGYIHRGIEKMNESLTYPQTLAL 227
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDY+ HA + +EK +GIE+ R + IR + E+ RI SHLL + AMD+G
Sbjct: 228 TDRLDYLGAHQNRHALCMCIEKAMGIEVSERVKYIRTIMDELQRIDSHLLFYSCLAMDLG 287
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
ALT +GF +RE ++ +E G R+ Y GGV D+ P + + + +
Sbjct: 288 ALTAFFYGFRDREMILDMFEETCGGRLIMNYNTIGGVQADLHPNFIPRVKKFIPYLRGII 347
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
++ D+ TGN I +QR +G + EDA +G +G R SG A D+RK PY Y ++D
Sbjct: 348 HEYHDVFTGNVIARQRLKGVGVLSREDAISFGCTGGTGRASGWACDVRKRMPYGVYDKVD 407
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F + GD + RY+VRM E+ ES+ II Q ++ + P + M
Sbjct: 408 FKEIVYTEGDSFARYMVRMDEIMESLNIIEQLIDNIPEG---------------PIQEKM 452
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K VP G Y AVE +GEFGV+L S G PYR R+ G
Sbjct: 453 K--------------PIIRVPEGSYYTAVEGSRGEFGVFLESHGDKTPYRLHYRSTGLPL 498
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ A++ +C+G ++AD+ AI G+LD V ++DR
Sbjct: 499 VSAVDTICRGAKIADLIAIGGTLDYVVPDIDR 530
>gi|303327572|ref|ZP_07358013.1| carbon monoxide-induced hydrogenase, large subunit [Desulfovibrio
sp. 3_1_syn3]
gi|302862512|gb|EFL85445.1| carbon monoxide-induced hydrogenase, large subunit [Desulfovibrio
sp. 3_1_syn3]
Length = 360
Score = 329 bits (844), Expect = 5e-88, Method: Composition-based stats.
Identities = 109/390 (27%), Positives = 181/390 (46%), Gaps = 33/390 (8%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
R+ I FGPQHP L + ++ E V + P +G +HRG E L+ K F Q V +
Sbjct: 4 RTTVIPFGPQHPVLPEPLHIKFVVEDETVVQAVPQLGFVHRGLESLVRNKDFNQMVFVVE 63
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+ + + Y A+E +LG+ P R Q +RV++SE+ RI SHLL + A G
Sbjct: 64 RICGICSCIHANCYCNAIEDMLGVTAPPRAQFLRVVWSELHRIHSHLLWLGLFADAFGFE 123
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
+ + RE +M E +G+R+ + GGV +D+ P+ + + D+ + +
Sbjct: 124 SVFQQFWRIREHVMDICEATAGNRVILSVNVVGGVRRDLSPDQIRWMLEQLDALEQGMRE 183
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
++ + + ++R IG + +DA G +G +RGSG D R Y Y++L+F
Sbjct: 184 LTSTMLNDYTVQERTRGIGLLSKDDARLLGAAGPTLRGSGWEIDER-MHGYAAYNDLNFI 242
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ + GDCY R VR E+ S+ +IR+ +NRL + +
Sbjct: 243 PVVEQDGDCYARSKVRFYEVLHSIDLIREALNRLPDSELTVKLPGN-------------- 288
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
P GE VE P+GE Y+ ++G R ++R P +A++
Sbjct: 289 ------------------PDGESIFRVEQPRGELFYYVRANGTKMLERMRVRTPTFANIP 330
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A+ + G +L DV I+ S+D +R
Sbjct: 331 ALLHMLPGCKLPDVPVIVLSIDPCISCTER 360
>gi|218696114|ref|YP_002403781.1| hydrogenase 4, subunit [Escherichia coli 55989]
gi|218352846|emb|CAU98645.1| hydrogenase 4, subunit [Escherichia coli 55989]
Length = 555
Score = 329 bits (844), Expect = 5e-88, Method: Composition-based stats.
Identities = 108/398 (27%), Positives = 171/398 (42%), Gaps = 34/398 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 158 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 217
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+ R IR + E+ R+ SHLLN+
Sbjct: 218 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVSQRAHTIRSILLEVERLHSHLLNLGLS 277
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E +GSR GGV +DI E
Sbjct: 278 CHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 337
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A + G +IRGSG A DLR PY
Sbjct: 338 MRADVSELVEMLLAMPNMEQRTQGIGILDRQIARDYSPVGPLIRGSGFARDLRFDHPYAD 397
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 398 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 442
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 443 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 485
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 486 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523
>gi|229585309|ref|YP_002843811.1| NADH dehydrogenase subunit D [Sulfolobus islandicus M.16.27]
gi|228020359|gb|ACP55766.1| NADH dehydrogenase (quinone) [Sulfolobus islandicus M.16.27]
Length = 410
Score = 329 bits (843), Expect = 5e-88, Method: Composition-based stats.
Identities = 134/387 (34%), Positives = 208/387 (53%), Gaps = 5/387 (1%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+N GPQHP + G +R+ ++L+G+I+E VD +G +HR EKL E + ++ +P +R
Sbjct: 29 ELNVGPQHPGS-GHMRIFVKLNGDIIEDVDLDVGYVHRTVEKLSENRNYMHLIPLVERPA 87
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ ++ Y +AVEK+LG+++P R Q +R +E+ RI SHL + ++ +G T
Sbjct: 88 ILDSIHMNLGYIIAVEKILGVDVPERAQYLRSFAAEVNRIASHLYGLGILSIFLGHSTGF 147
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+WGF +RE + E +G+R+ +Y PGGV +DI E+ + L D
Sbjct: 148 MWGFGDREVWVTILEALTGARVTNSYVIPGGVRRDISQEIKDMTLKAISYQRRRLEDWKK 207
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ N + R N+G + E+A WG G +R SG +D+RK +PY Y LDF+IP+
Sbjct: 208 IFFYNPSIRARLENVGVMSKENAIKWGAVGPNLRASGVYYDVRKIEPYGAYDNLDFEIPV 267
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
K GD R LVR+ E+ +S++I+ Q + + N +S K +PP R K
Sbjct: 268 YKEGDGLARGLVRLEEIEQSMRILEQIIKNIPEGNI---LSDRFFKQIPPTRLK-KYWET 323
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
Y + P GE + VEA +GE Y++SDG KPYR ++ P Y + +
Sbjct: 324 YRRIVLPGYYASFRPPKGEAISRVEAGRGELVYYVVSDGSPKPYRLRMITPSYRSIYVFK 383
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVDR 396
LCKG + AD+ +I GSLD E DR
Sbjct: 384 ELCKGSRYADLVSIYGSLDYFPPEADR 410
>gi|218129268|ref|ZP_03458072.1| hypothetical protein BACEGG_00845 [Bacteroides eggerthii DSM 20697]
gi|217988646|gb|EEC54966.1| hypothetical protein BACEGG_00845 [Bacteroides eggerthii DSM 20697]
Length = 530
Score = 329 bits (843), Expect = 5e-88, Method: Composition-based stats.
Identities = 147/391 (37%), Positives = 213/391 (54%), Gaps = 29/391 (7%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ +N GPQHPA HGV+R + L+GEI+E++D + G +HRG EK+ E+ T+ Q +
Sbjct: 169 DDEYVVNIGPQHPATHGVMRFRVSLEGEIIEKIDANCGYIHRGIEKMCESLTYPQTLALT 228
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DRLDY+ HA + +E+ +GIE+ R Q IR + E+ RI SHLL + AMD+GA
Sbjct: 229 DRLDYLGAHQNRHALCMCIEQAMGIEVSERVQYIRTIMDELQRIDSHLLFYSCLAMDLGA 288
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
LT +GF +REK++ +E G R+ Y GGV DI P+ + + + L+
Sbjct: 289 LTAFFYGFRDREKILDIFEGTCGGRLIMNYNTIGGVQADIAPDFQKKVKEFIPYLRGILH 348
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ D+ TGN I +QR +G + EDA +G +G R SG A D+RK PY YS++DF
Sbjct: 349 EYHDVFTGNIIAQQRLKGVGVLSREDAIAFGATGGTGRASGWACDVRKRMPYSMYSKVDF 408
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
I GD + RYL+RM E+ ES+ II Q ++ + N MK
Sbjct: 409 KEVIRTEGDSWARYLIRMDEIMESLNIIEQLIDNIPEGNYQ---------------EKMK 453
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
VP G YAAVE +GEFGV+L S G PYR R+ G +
Sbjct: 454 --------------PIIRVPEGNYYAAVEGSRGEFGVFLESHGDKMPYRLHFRSTGLPLV 499
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ +C+G ++AD+ AI G+LD V ++DR
Sbjct: 500 STVDTICRGAKIADLIAIGGTLDYVVPDIDR 530
>gi|160891171|ref|ZP_02072174.1| hypothetical protein BACUNI_03618 [Bacteroides uniformis ATCC 8492]
gi|156859392|gb|EDO52823.1| hypothetical protein BACUNI_03618 [Bacteroides uniformis ATCC 8492]
Length = 529
Score = 329 bits (843), Expect = 5e-88, Method: Composition-based stats.
Identities = 146/391 (37%), Positives = 211/391 (53%), Gaps = 29/391 (7%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ +N GPQHPA HGV+R + L+GEI++++D + G +HRG EK+ E+ T+ Q +
Sbjct: 168 DEEYVVNIGPQHPATHGVMRFRVSLEGEIIDKIDANCGYIHRGIEKMCESLTYPQTLALT 227
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DRLDY+ HA + +EK +G+E+ R Q IR + E+ RI SHLL + AMD+GA
Sbjct: 228 DRLDYLGAHQNRHALCMCIEKAMGVEVSERVQYIRTIMDELQRIDSHLLFYSCLAMDLGA 287
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
LT +GF +REK++ +E G R+ Y GGV DI P V+ + + L+
Sbjct: 288 LTAFFYGFRDREKILDIFEETCGGRLIMNYNTIGGVQADIAPGFVKKVKEFIPYLRGILH 347
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ D+ TGN I +QR +G + EDA +G +G R SG A D+RK PY Y ++DF
Sbjct: 348 EYHDVFTGNIIAQQRLKGVGILSREDAIAFGATGGTGRASGWACDVRKRMPYAVYDKVDF 407
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
I GD + RYL+RM E+ ES+KII Q ++ + MK
Sbjct: 408 KEVIRTEGDSWARYLIRMDEILESLKIIEQLIDNIPEGAYQ---------------EKMK 452
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
VP G YAAVE +GEFGV+L S G PYR R+ G +
Sbjct: 453 --------------PIIRVPEGTYYAAVEGSRGEFGVFLESHGDKMPYRLHFRSTGLPLV 498
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +C+G ++AD+ AI G+LD V ++DR
Sbjct: 499 STVNTICRGAKIADLIAIGGTLDYVVPDIDR 529
>gi|270294463|ref|ZP_06200665.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|317481068|ref|ZP_07940147.1| respiratory-chain NADH dehydrogenase [Bacteroides sp. 4_1_36]
gi|270275930|gb|EFA21790.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|316902781|gb|EFV24656.1| respiratory-chain NADH dehydrogenase [Bacteroides sp. 4_1_36]
Length = 529
Score = 329 bits (843), Expect = 6e-88, Method: Composition-based stats.
Identities = 146/391 (37%), Positives = 211/391 (53%), Gaps = 29/391 (7%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ +N GPQHPA HGV+R + L+GEI++++D + G +HRG EK+ E+ T+ Q +
Sbjct: 168 DEEYVVNIGPQHPATHGVMRFRVSLEGEIIDKIDANCGYIHRGIEKMCESLTYPQTLALT 227
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DRLDY+ HA + +EK +G+E+ R Q IR + E+ RI SHLL + AMD+GA
Sbjct: 228 DRLDYLGAHQNRHALCMCIEKAMGVEVSERVQYIRTIMDELQRIDSHLLFYSCLAMDLGA 287
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
LT +GF +REK++ +E G R+ Y GGV DI P V+ + + L+
Sbjct: 288 LTAFFYGFRDREKILDIFEETCGGRLIMNYNTIGGVQADIAPGFVKKVKEFIPYLRGILH 347
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ D+ TGN I +QR +G + EDA +G +G R SG A D+RK PY Y ++DF
Sbjct: 348 EYHDVFTGNIIAQQRLKGVGILSREDAIAFGATGGTGRASGWACDVRKRMPYAVYDKVDF 407
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
I GD + RYL+RM E+ ES+KII Q ++ + MK
Sbjct: 408 KEIIRTEGDSWARYLIRMDEILESLKIIEQLIDNIPEGAYQ---------------EKMK 452
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
VP G YAAVE +GEFGV+L S G PYR R+ G +
Sbjct: 453 --------------PIIRVPEGTYYAAVEGSRGEFGVFLESHGDKMPYRLHFRSTGLPLV 498
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +C+G ++AD+ AI G+LD V ++DR
Sbjct: 499 STVNTICRGAKIADLIAIGGTLDYVVPDIDR 529
>gi|153807450|ref|ZP_01960118.1| hypothetical protein BACCAC_01730 [Bacteroides caccae ATCC 43185]
gi|149129812|gb|EDM21024.1| hypothetical protein BACCAC_01730 [Bacteroides caccae ATCC 43185]
Length = 530
Score = 329 bits (843), Expect = 6e-88, Method: Composition-based stats.
Identities = 146/390 (37%), Positives = 213/390 (54%), Gaps = 29/390 (7%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+ +N GPQHPA HGV+R + L+GEI+ ++D + G +HRG EK+ E+ T+ Q + D
Sbjct: 170 EEYVVNIGPQHPATHGVMRFRVSLEGEIIRKIDANCGYIHRGIEKMNESLTYPQTLALTD 229
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDY+ HA + +EK +G+E+ R Q IR + E+ RI SHLL + AMD+GAL
Sbjct: 230 RLDYLGAHQNRHALCMCIEKAMGVEVSERVQYIRTIMDELQRIDSHLLFFSALAMDLGAL 289
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
T +GF +REK++ +E G R+ Y GGV D+ P V+ + + +++
Sbjct: 290 TAFFYGFRDREKILDIFEETCGGRLIMNYNTIGGVQADLHPNFVKRVKEFIPYMRGIIHE 349
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
D+ TGN I + R +G + EDA +G +G R SG A D+RK PY Y ++DF
Sbjct: 350 YHDIFTGNVIAQSRMKGVGVLSREDAISFGCTGGTGRASGWACDVRKRIPYGVYDKVDFK 409
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ GDC+ RYLVRM E+ ES+ II Q ++ + GP I+
Sbjct: 410 EIVYTEGDCFARYLVRMDEIMESLNIIEQLIDNI----PEGPYQEKMKPII--------- 456
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
VP G YAAVE +GEFGV+L S G PYR RA G +
Sbjct: 457 ----------------RVPEGSYYAAVEGSRGEFGVFLESQGDKMPYRLHYRATGLPLVA 500
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A++ +C+G ++AD+ AI G+LD V ++DR
Sbjct: 501 AIDTICRGAKIADLIAIGGTLDYVVPDIDR 530
>gi|84495011|ref|ZP_00994130.1| putative NADH dehydrogenase I chain D [Janibacter sp. HTCC2649]
gi|84384504|gb|EAQ00384.1| putative NADH dehydrogenase I chain D [Janibacter sp. HTCC2649]
Length = 395
Score = 329 bits (843), Expect = 6e-88, Method: Composition-based stats.
Identities = 135/395 (34%), Positives = 206/395 (52%), Gaps = 31/395 (7%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ +N GPQHPA HGVLRL L LDGE + +P IG +HRG EKL E + + Q +
Sbjct: 26 TADMVLNIGPQHPATHGVLRLRLTLDGERIVHAEPIIGYMHRGAEKLFEVRDYRQIIVLA 85
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
+R D+++ + E LAVE++LG+E+P R +R + +E+ R+LSHL+ + + +++GA
Sbjct: 86 NRHDWLSAFSNELGVVLAVEEMLGMEVPERAVWLRTMLAELNRVLSHLMFLGSYPLELGA 145
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+TP + F ERE+L E ASG RMH + R GG+ +D+P + + + L
Sbjct: 146 ITPVFYAFREREELQAVMEEASGGRMHYMFNRVGGLKEDVPAGWLGRVDSAVQAVRGRLP 205
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE--- 242
D+ +L GN I R +G + +G SG + R SG DLR+ QPY Y E
Sbjct: 206 DLESMLIGNEILTARTRGVGVLDAATVAAYGVSGPIARASGVDIDLRRDQPYLAYGELFG 265
Query: 243 --LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+ GDC R V + ++ S+ ++ C++ +LG GPV+ PK++
Sbjct: 266 EGGPGRVVTRPAGDCLSRLEVLLEQVHVSLDLVEHCLS-VLGSMAPGPVNQRLPKVL--- 321
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
VP GE Y A E P G G +L+S G P+R K+R+
Sbjct: 322 ----------------------KVPEGETYVATENPLGFNGYFLVSRGEKTPWRLKLRSA 359
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ ++Q + L G ++D+ AILGS V G+VD
Sbjct: 360 SFNNVQVLTELLPGTLVSDMVAILGSTFFVVGDVD 394
>gi|332885915|gb|EGK06159.1| hypothetical protein HMPREF9456_00033 [Dysgonomonas mossii DSM
22836]
Length = 543
Score = 329 bits (843), Expect = 6e-88, Method: Composition-based stats.
Identities = 142/392 (36%), Positives = 209/392 (53%), Gaps = 29/392 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ + IN GPQHP+ HGV+ + L+GEIV+++D H G +HRG EKL E T+ Q + +
Sbjct: 181 EKDDYIINIGPQHPSTHGVMHFRVALEGEIVKKIDVHSGYIHRGIEKLSEKLTYPQILHF 240
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDY++ H + VEK IE+P R Q IR + E+ RI SHL+ T MD+G
Sbjct: 241 TDRLDYLSANINRHGLCMCVEKAAQIEVPERAQYIRTIMDELNRIDSHLVAWGTMCMDLG 300
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
+ T ++G ERE ++ +E+ +G R+ Y GGV DI P+ D+ + AL
Sbjct: 301 STTAFIYGMREREDILKIFEKNTGGRLIINYNVLGGVMFDIQPDFQSDVKAFIPVMRKAL 360
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ L TGN I R +G + EDA + +G R SG + D+RK PY Y +++
Sbjct: 361 IEYDKLFTGNVIAVGRMKGLGLLSKEDAISYAVTGPAGRASGFSCDIRKHMPYALYDKVE 420
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F+ I ++GD +DRYL R+ E+ ES+KII Q ++ + G A I+
Sbjct: 421 FNEVIRENGDSFDRYLNRLDEIEESLKIIEQLIDNIPD----GDYLAKTKAII------- 469
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
+P GE Y VEA +GEFG+Y+ S G PYR K R+P A
Sbjct: 470 ------------------KLPEGEYYQRVEAGRGEFGIYIESRGDKAPYRLKFRSPSMAA 511
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ AM +C +++D I GS+D V ++DR
Sbjct: 512 VSAMPLICADEKISDFIGIGGSMDYVIPDIDR 543
>gi|284164401|ref|YP_003402680.1| NADH-ubiquinone oxidoreductase chain 49kDa [Haloterrigena
turkmenica DSM 5511]
gi|284014056|gb|ADB60007.1| NADH-ubiquinone oxidoreductase chain 49kDa [Haloterrigena
turkmenica DSM 5511]
Length = 552
Score = 329 bits (843), Expect = 6e-88, Method: Composition-based stats.
Identities = 155/402 (38%), Positives = 218/402 (54%), Gaps = 32/402 (7%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFL-QA 61
+S + +N GP HPA HGVL L LDGE V VDP IG LHR E++ + T+ Q
Sbjct: 175 DAESDTMFLNIGPHHPATHGVLHLETVLDGETVVDVDPDIGYLHRCEEQMCQNGTYRHQI 234
Query: 62 VPYFDRLDYVA-PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY DR DYV+ + E AYA E L IE+P Q+IR + +E+ RI SH+L + T A
Sbjct: 235 MPYPDRWDYVSAGLLNEWAYARVAEDLADIEVPEYAQVIRTMGAELCRIASHMLALATFA 294
Query: 121 MDVG--ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIP---PELVEDIGC 175
+DV +G +RE + E +G R+ YFR GGV D+P E +
Sbjct: 295 LDVYGDFTAIFQYGMRDREVVQDILEDLTGQRLMFNYFRLGGVAWDLPEPRDEFIAKTRD 354
Query: 176 WCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQ 235
+ D P+ +++ ++LLT N IF+ R + G ++ E A +G +G + RGSG +DLR+
Sbjct: 355 FLDELPAKVDEYNNLLTSNEIFQVRTHDTGVLEPEAAKDYGCTGPVARGSGIDYDLRRDD 414
Query: 236 PYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNK-VGPVSASDP 294
PY Y EL++D+ D Y R LVRM E+ ES KII QC++ L + V A+ P
Sbjct: 415 PYGYYDELEWDVVTEPGCDNYSRVLVRMQEVEESAKIIEQCLDLLEDWPEDEREVQANVP 474
Query: 295 KIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYR 354
+ + P E+Y AVE KGE G+Y+ +DG +KP R
Sbjct: 475 RTLKPDADT------------------------EIYRAVEGAKGELGIYIRADGTDKPAR 510
Query: 355 CKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
KIR+P + +L A+ + G + D+ A LGSLDIV GEVDR
Sbjct: 511 FKIRSPCFHNLSALPEMSNGEYVPDLIASLGSLDIVLGEVDR 552
>gi|212710433|ref|ZP_03318561.1| hypothetical protein PROVALCAL_01495 [Providencia alcalifaciens DSM
30120]
gi|212686853|gb|EEB46381.1| hypothetical protein PROVALCAL_01495 [Providencia alcalifaciens DSM
30120]
Length = 577
Score = 329 bits (843), Expect = 6e-88, Method: Composition-based stats.
Identities = 105/397 (26%), Positives = 165/397 (41%), Gaps = 32/397 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
++ K++S + GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 180 INDSKTQSRVVPIGPLHITSDEPGHFRLFVDGERIVDADYRMFYVHRGMEKLAETRMGYN 239
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGI +P R IR + E+ R+ SHLLN+
Sbjct: 240 EVTFLSDRVCGICGFTHSVAYTTSVENALGIYVPQRAHTIRSVLLEVERLHSHLLNIGLA 299
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
+ G T + F REK M E +G+R GGV +D E
Sbjct: 300 SHFTGFDTGFMQFFRVREKSMTMAELLTGARKTYGTNLIGGVRRDFLKEQRVKTIQLVKE 359
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ + D+L +QR V +G + + A + G MIR SG D+R P+
Sbjct: 360 MRQDVTQLVDMLLSTPNMEQRTVGVGRLDPQVARDYSPVGPMIRASGFKRDVRFDHPFAD 419
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y L + D Y R +VR+ E +S+ +I ++ + GP+ P
Sbjct: 420 YGNLPKTLFTLDGCDVYSRVMVRIKETLDSLSMIEYALDNM----PEGPILTEGFTYQPH 475
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
K A EAP+GE + + K YR + RA
Sbjct: 476 KFAL---------------------------GYTEAPRGEDVHWSMLGDNQKLYRWRCRA 508
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 509 ATYANWPVLRYMLQGNTVSDAPLIIGSLDPCYSCTDR 545
>gi|323345258|ref|ZP_08085481.1| NADH dehydrogenase I subunit D [Prevotella oralis ATCC 33269]
gi|323093372|gb|EFZ35950.1| NADH dehydrogenase I subunit D [Prevotella oralis ATCC 33269]
Length = 523
Score = 329 bits (843), Expect = 6e-88, Method: Composition-based stats.
Identities = 139/391 (35%), Positives = 204/391 (52%), Gaps = 29/391 (7%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
F IN GPQHP+ HGVLRL LDGE ++R+ PH+G +HRG EK+ E T+ Q +
Sbjct: 162 DDDFVINIGPQHPSTHGVLRLQTILDGETIKRIYPHLGYIHRGMEKMCEEYTYPQTLALT 221
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DR+DY++ M HA +E+ + +E+ R + IR + E+ RI SHLL + A D+GA
Sbjct: 222 DRMDYLSAMMNRHALVGVIEEAMEVELTDRIRYIRTIMDELQRIDSHLLYLGCCAQDLGA 281
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
LT L+ +RE ++ E +G R+ Y+R GG +DI P V + C L
Sbjct: 282 LTAFLYSMRDREHVLNVMEETTGGRLIQNYYRIGGCQEDIDPNFVNNCKTLCSYLKPMLK 341
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ D+ N I K R V IGT+ E+ +G +G R SG D+RK+ PY+ Y ++++
Sbjct: 342 EYMDVFGNNVITKNRFVGIGTMSKENIISYGVTGASGRASGWKNDVRKNHPYDMYDKVEW 401
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
D D Y RYLVR+ E+R+S++II Q V+ + G I+
Sbjct: 402 DEITNDFCDSYGRYLVRIDEIRQSIRIIEQLVDNI----PEGDYYVKQKPII-------- 449
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
VP G+ Y + E +GE GVYL S G PYR K R G H+
Sbjct: 450 -----------------KVPEGQWYFSCEGSRGEIGVYLDSKGDKSPYRLKFRPMGLNHV 492
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AM+ + +G ++AD+ +LD V ++DR
Sbjct: 493 AAMDEMLRGEKIADLVTTGAALDFVIPDIDR 523
>gi|227830777|ref|YP_002832557.1| NADH dehydrogenase subunit D [Sulfolobus islandicus L.S.2.15]
gi|229579673|ref|YP_002838072.1| NADH dehydrogenase subunit D [Sulfolobus islandicus Y.G.57.14]
gi|229581661|ref|YP_002840060.1| NADH dehydrogenase subunit D [Sulfolobus islandicus Y.N.15.51]
gi|284998291|ref|YP_003420059.1| NADH dehydrogenase (ubiquinone) [Sulfolobus islandicus L.D.8.5]
gi|227457225|gb|ACP35912.1| NADH dehydrogenase (quinone) [Sulfolobus islandicus L.S.2.15]
gi|228010388|gb|ACP46150.1| NADH dehydrogenase (quinone) [Sulfolobus islandicus Y.G.57.14]
gi|228012377|gb|ACP48138.1| NADH dehydrogenase (quinone) [Sulfolobus islandicus Y.N.15.51]
gi|284446187|gb|ADB87689.1| NADH dehydrogenase (ubiquinone) [Sulfolobus islandicus L.D.8.5]
gi|323475131|gb|ADX85737.1| NADH dehydrogenase (quinone) [Sulfolobus islandicus REY15A]
gi|323477863|gb|ADX83101.1| NADH dehydrogenase (quinone) [Sulfolobus islandicus HVE10/4]
Length = 410
Score = 328 bits (842), Expect = 7e-88, Method: Composition-based stats.
Identities = 134/387 (34%), Positives = 209/387 (54%), Gaps = 5/387 (1%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+N GPQHP + G +R+ ++L+G+I+E VD +G +HR EKL E + ++ +P +R
Sbjct: 29 ELNVGPQHPGS-GHMRIFVKLNGDIIEDVDLDVGYVHRTVEKLSENRNYMHLIPLVERPA 87
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ ++ Y +AVEK+LG+++P R Q +R +E+ RI SHL + ++ +G T
Sbjct: 88 ILDSIHMNLGYIIAVEKILGVDVPERAQYLRSFAAEVNRIASHLYGLGILSIFLGHSTGF 147
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+WGF +RE + E +G+R+ +Y PGGV +DI E+ + L D
Sbjct: 148 MWGFGDREVWVTILEALTGARVTNSYVIPGGVRRDISQEIKDMTLKAISYQRRRLEDWKK 207
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ N + R N+G + E+A WG G +R SG +D+RK +PY Y +LDF+IP+
Sbjct: 208 IFFYNPSIRARLENVGVMSKENAIKWGAVGPNLRASGVYYDVRKIEPYGAYDKLDFEIPV 267
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
K GD R LVR+ E+ +S++I+ Q + + N +S K +PP R K
Sbjct: 268 YKEGDGLARGLVRLEEIEQSMRILEQIIKNIPEGNI---LSDRFFKQIPPTRLK-KYWET 323
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
Y + P GE + VEA +GE Y++SDG KPYR ++ P Y + +
Sbjct: 324 YRRIVLPGYYASFRPPKGEAISRVEAGRGELVYYVVSDGSPKPYRLRMITPSYRSIYVFK 383
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVDR 396
LCKG + AD+ +I GSLD E DR
Sbjct: 384 ELCKGSRYADLVSIYGSLDYFPPEADR 410
>gi|15922546|ref|NP_378215.1| NADH dehydrogenase subunit D [Sulfolobus tokodaii str. 7]
gi|15623336|dbj|BAB67324.1| 392aa long hypothetical NADH-plastoquinone oxidoreductase subunit 4
[Sulfolobus tokodaii str. 7]
Length = 392
Score = 328 bits (842), Expect = 7e-88, Method: Composition-based stats.
Identities = 134/388 (34%), Positives = 211/388 (54%), Gaps = 7/388 (1%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+N GPQHP + G +R+ ++L+G+I+ D +G +HR EKL E + ++ +P +R
Sbjct: 11 ELNVGPQHPGS-GHMRIYVKLNGDIIVDADLDVGYVHRAVEKLSEVRNYMHLIPLVERPA 69
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ ++ Y +AVEK+LG+++P R Q +R L +E+ RI SHL + A+ +G T
Sbjct: 70 ILDSIHMNLGYIMAVEKILGVDVPERAQYLRTLAAEVNRIASHLYGIGILAIFLGHSTGF 129
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+WGF +RE + + +G+R+ +Y PGGV +D+ P + E I + D
Sbjct: 130 MWGFGDREVWVEILQALTGARVTNSYIIPGGVRRDLIPTIKEMIEKAIVYQRKKVQDWYK 189
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ N + R N+G + E+A WG G +R SG +D+RK +PY Y ++DF+IP+
Sbjct: 190 IFVKNPNIRDRLENVGVMTRENAIKWGAVGPNLRASGVYYDVRKIEPYAAYDKVDFEIPV 249
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
K GD Y R LVR E+ +S++I+ Q + + N +S K +PP R +K+ E
Sbjct: 250 YKEGDAYARLLVRFEEIEQSMRILEQVIKNIPEGNI---LSDRFFKQIPPTR--LKKWWE 304
Query: 310 SLIH-HFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
F Y + P GE + VEA +GE Y++SDG PYR ++ P Y +
Sbjct: 305 GQRRVVFPGYYASFRPPRGEAISRVEAARGELVYYVVSDGSPHPYRLRMITPSYRLIYVF 364
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ L KG + AD+ AI GSLD E DR
Sbjct: 365 KELAKGARYADLVAIYGSLDYFPPEADR 392
>gi|324112978|gb|EGC06954.1| respiratory-chain NADH dehydrogenase [Escherichia fergusonii B253]
Length = 571
Score = 328 bits (842), Expect = 7e-88, Method: Composition-based stats.
Identities = 107/398 (26%), Positives = 170/398 (42%), Gaps = 34/398 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGDSDARVIPIGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE L I +P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTTSVENALDIVVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E +GSR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A + G +IRGSG A DLR PY
Sbjct: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQIARDYSPVGPLIRGSGFARDLRFDHPYAD 413
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 414 YGNIPKTLFTFSGGDVFSRVMVRVKETFDSLAMLEYALDNMPNTP--------------- 458
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 459 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 501
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 502 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 539
>gi|87306370|ref|ZP_01088517.1| NADH dehydrogenase (ubiquinone) [Blastopirellula marina DSM 3645]
gi|87290549|gb|EAQ82436.1| NADH dehydrogenase (ubiquinone) [Blastopirellula marina DSM 3645]
Length = 418
Score = 328 bits (842), Expect = 8e-88, Method: Composition-based stats.
Identities = 141/396 (35%), Positives = 214/396 (54%), Gaps = 13/396 (3%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGVLRL+L DGE+V PHIG LHR EK+ E T Q +PY
Sbjct: 32 RTDEMLVNMGPQHPSTHGVLRLVLRTDGEVVSEATPHIGYLHRCAEKIGENLTPRQWIPY 91
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY+A MN +ALAVEKL+ ++P + + +RV+ +E+ RI SHL+ + T +D+G
Sbjct: 92 TDRMDYLAGMNMNLGWALAVEKLIDYDLPEKARHLRVIIAELNRIASHLVGMGTYGLDLG 151
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
+ +P L+ F ERE+++ E A G+R+ +Y PGG D+PP ++ + + D F +
Sbjct: 152 SFSPFLYAFRERERILDLLEDACGARLTYSYLTPGGATADLPPGWLQKLTGFLDQFEPVI 211
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLR---KSQPYECYS 241
D LLT N IF +R NIG + E A +G SG ++RGSG +DLR + + Y+
Sbjct: 212 LDYHALLTNNAIFIKRTANIGVMSAEMAIDYGCSGPVLRGSGVDYDLRRDGEERYTSLYA 271
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
F++ + K+G S ++ C +R + + + K
Sbjct: 272 GYAFEVIVEKNG---SYPRDHEYPPVPSDAVLGDCWHRFYVRMLEVIQAIDLLRQGIEKY 328
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGN-KPYRCKIRAP 360
+ + I +P GE Y E P+G+ G Y++SDG P R + R+
Sbjct: 329 SQATGDWGTPIKL------ATKLPKGEAYLETECPRGQMGFYIVSDGSGSIPLRARARSS 382
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +L LC+ +ADV AI+GSLDIV GE+DR
Sbjct: 383 CFCNLSVAPELCRDCLIADVPAIIGSLDIVMGEIDR 418
>gi|260171804|ref|ZP_05758216.1| NADH dehydrogenase I, chain D [Bacteroides sp. D2]
gi|315920116|ref|ZP_07916356.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313693991|gb|EFS30826.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 530
Score = 328 bits (842), Expect = 8e-88, Method: Composition-based stats.
Identities = 144/390 (36%), Positives = 212/390 (54%), Gaps = 29/390 (7%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+ +N GPQHPA HGV+R + L+GEI+ ++D + G +HRG EK+ E+ T+ Q + D
Sbjct: 170 EEYVVNIGPQHPATHGVMRFRVSLEGEIIRKIDANCGYIHRGIEKMNESLTYPQTLALTD 229
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDY+ HA + +EK +GIE+ R + IR + E+ RI SHLL + MD+GAL
Sbjct: 230 RLDYLGAHQNRHALCMCIEKAMGIEVSERVKYIRTIMDELQRIDSHLLFYSALTMDLGAL 289
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
T +GF +REK++ +E G R+ Y GGV D+ P V+ + + +++
Sbjct: 290 TAFFYGFRDREKILDIFEETCGGRLIMNYNTIGGVQADLHPNFVKRVKEFIPYMRGIIHE 349
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
D+ TGN I + R +G + EDA +G +G R SG A D+RK PY Y ++DF
Sbjct: 350 YHDIFTGNIIAQSRMKGVGVLSREDAISFGCTGGTGRASGWACDVRKRMPYGVYDKVDFK 409
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ GDC+ RYLVRM E+ ES+ II Q ++ + GP I+
Sbjct: 410 EIVYTEGDCFARYLVRMDEIMESLNIIEQLIDNI----PEGPYQEKMKPII--------- 456
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
VP G YAAVE +GEFGV+L S G PYR RA G +
Sbjct: 457 ----------------RVPEGSYYAAVEGSRGEFGVFLESQGDKMPYRLHYRATGLPLVA 500
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A++ +C+G ++AD+ AI G++D V ++DR
Sbjct: 501 AIDTICRGAKIADLIAIGGTIDYVVPDIDR 530
>gi|239907414|ref|YP_002954155.1| NADH-quinone oxidoreductase chain D [Desulfovibrio magneticus RS-1]
gi|239797280|dbj|BAH76269.1| NADH-quinone oxidoreductase chain D [Desulfovibrio magneticus RS-1]
Length = 370
Score = 328 bits (842), Expect = 8e-88, Method: Composition-based stats.
Identities = 158/390 (40%), Positives = 219/390 (56%), Gaps = 29/390 (7%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
++ GPQHP+ HGVLR++LELDGE + R +P +G +HR E + E KT+ Q +P
Sbjct: 10 DKLILSMGPQHPSTHGVLRILLELDGEYIVRAEPVLGYIHRMHEWMAEQKTYFQFMPNMG 69
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+DY+ M AYA AVE+L GIE+P RG+ IRV +E+ RI SHLL +D+GA
Sbjct: 70 RVDYLHAMAWNWAYAGAVERLAGIEVPERGEHIRVAVTELNRISSHLLWWGAYLLDLGAF 129
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP ++ F++RE L+ + +GSR+ +YF GGV+ D+P + + S L
Sbjct: 130 TPIMYAFDDREILLDILQAVTGSRLTYSYFTFGGVYNDVPGDFAPRCLAFTKHLRSRLPM 189
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
DL+T N I + R IG + ++ A +G +G +IRGSGA D R+++PY Y + DF
Sbjct: 190 YRDLVTDNVILRGRCEGIGEMDVDLARRYGATGPVIRGSGAPVDTRRAEPYSVYGKFDFR 249
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
IP GD RY+VRM E+ S II Q V+ L GP SA PK
Sbjct: 250 IPAYSQGDAMARYMVRMDELETSCDIIDQAVSELPD----GPCSAKAPK----------- 294
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
P GE AVE +G+ V++ SDGG KPYR K+RAPG+++L
Sbjct: 295 --------------TLKPPKGEACYAVEGARGKILVHVRSDGGPKPYRVKLRAPGFSNLS 340
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
L +G LAD +ILGSLD+V E+DR
Sbjct: 341 VFCELARGTLLADAVSILGSLDLVIPEIDR 370
>gi|265765491|ref|ZP_06093766.1| NADH dehydrogenase (quinone), D subunit [Bacteroides sp. 2_1_16]
gi|263254875|gb|EEZ26309.1| NADH dehydrogenase (quinone), D subunit [Bacteroides sp. 2_1_16]
Length = 530
Score = 328 bits (841), Expect = 9e-88, Method: Composition-based stats.
Identities = 141/392 (35%), Positives = 211/392 (53%), Gaps = 29/392 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
R + +N GPQHPA HGV+R + L+GE ++++D + G +HRG EK+ E+ T+ Q +
Sbjct: 168 DDREYVVNIGPQHPATHGVMRFRVSLEGETIKKLDANCGYIHRGIEKMNESLTYPQTLAL 227
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDY+ HA + +EK +GIE+ R + IR + E+ RI SHLL + AMD+G
Sbjct: 228 TDRLDYLGAHQNRHALCMCIEKAMGIEVSERVKYIRTIMDELQRIDSHLLFYSCLAMDLG 287
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
ALT +GF +RE ++ +E G R+ Y GGV D+ P + + + +
Sbjct: 288 ALTAFFYGFRDREMILDMFEETCGGRLIMNYNTIGGVQADLHPNFIPRVKKFIPYLRGII 347
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
++ D+ TGN I +QR +G + EDA +G +G R SG A D+RK PY Y ++D
Sbjct: 348 HEYHDVFTGNVIARQRLKGVGVLSREDAISFGCTGGTGRASGWACDVRKRMPYGVYDKVD 407
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F + GD + RY+VRM E+ ES+ II Q ++ + P + M
Sbjct: 408 FKEIVYTEGDSFARYMVRMDEIIESLNIIEQLIDNIPEG---------------PIQEKM 452
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K VP G Y AVE +GEFGV+L S G PYR R+ G
Sbjct: 453 K--------------PIIRVPEGSYYTAVEGSRGEFGVFLESHGDKTPYRLHYRSTGLPL 498
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ A++ +C+G ++AD+ AI G+LD V ++DR
Sbjct: 499 VSAVDTICRGAKIADLIAIGGTLDYVVPDIDR 530
>gi|284040189|ref|YP_003390119.1| NADH dehydrogenase (quinone) [Spirosoma linguale DSM 74]
gi|283819482|gb|ADB41320.1| NADH dehydrogenase (quinone) [Spirosoma linguale DSM 74]
Length = 406
Score = 328 bits (841), Expect = 9e-88, Method: Composition-based stats.
Identities = 161/397 (40%), Positives = 225/397 (56%), Gaps = 30/397 (7%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
+N GPQHP+ HGVLR + DGEI+ V PH+G LHR EK + F Q +P+ DR
Sbjct: 32 EMILNMGPQHPSTHGVLRFEVVTDGEIIVDVVPHLGYLHRCFEKHAQHLPFNQTIPFVDR 91
Query: 68 LDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
LDY+A MN EHA+ + VE++LGIE IP R + IRVL +E+ RI +H + V T A+D+GA
Sbjct: 92 LDYLAAMNSEHAFVMGVERMLGIENDIPKRTEYIRVLVAELNRIAAHFVGVGTYALDIGA 151
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
TP LW +RE + E SG+RM Y GG+ D+P E + + L
Sbjct: 152 YTPFLWLMRDREHIQRMLEWVSGARMLYNYIWVGGLFYDLPVGFEERCREFVNYLKPKLV 211
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
++ L+ N IF +R N+G + L A +G +G M+RGSG +DLR+ Y Y ELDF
Sbjct: 212 ELQQLVIENEIFVKRTANVGVLPLAVAIDYGCTGPMLRGSGLRYDLRRVDGYSVYPELDF 271
Query: 246 DIP-----IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
DIP +G GDC+DR VR++E ES++II QC+++L+G K DP+ V PK
Sbjct: 272 DIPIGEGKVGTVGDCWDRNNVRVLECHESIRIIEQCLDKLMGDYK--RTRDYDPQAVVPK 329
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG-GNKPYRCKIRA 359
+ + YA E+ KGE G + +DG + P RCK R+
Sbjct: 330 K--------------------IRPKAMDFYARAESSKGELGFFFRTDGKSDIPVRCKARS 369
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +L + + KG LAD+ AI+GS+D+V GEVDR
Sbjct: 370 CCFHNLSVISEISKGAMLADLVAIIGSIDVVMGEVDR 406
>gi|332796876|ref|YP_004458376.1| NADH dehydrogenase subunit D [Acidianus hospitalis W1]
gi|332694611|gb|AEE94078.1| NADH dehydrogenase subunit D [Acidianus hospitalis W1]
Length = 400
Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats.
Identities = 133/388 (34%), Positives = 209/388 (53%), Gaps = 7/388 (1%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+N GPQHP + G +R++++L+G+IVE + +G +HR EKL E + ++ +P +R
Sbjct: 19 ELNVGPQHPGS-GHMRILVKLNGDIVEDCELDVGYVHRAVEKLGENRNYMHLIPLVERPA 77
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ ++ Y +AVEK+L +++P R +R +E+ RI SHL + + +G T
Sbjct: 78 ILDSIHMNMGYVMAVEKILNVDVPERALYLRSFAAEVNRIASHLYGLGILGIFIGHSTAF 137
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+WGF +RE + E +G+R+ +Y PGGV +D+ P ++E L D
Sbjct: 138 MWGFGDREVWLQILEALTGARVTNSYIIPGGVRRDLTPSIIEMTKKAIVYMRKKLKDWEK 197
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ N R N+G + E A WG G +R SG +D+RK++PY YS+LDF+IP+
Sbjct: 198 IFLKNPTIMDRLQNVGVMTREQAIEWGAVGPNLRASGVNFDVRKAEPYAAYSKLDFEIPV 257
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
K GD Y R LVR EM +S++I+ Q + + ++ K +PP R MK+ ++
Sbjct: 258 YKEGDGYARTLVRFEEMEQSMRILEQIIKDIPEGPI---LADRFLKQIPPIR--MKKWVQ 312
Query: 310 SLIHH-FKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
Y + P GE VEA +GE Y++SDG KPYR ++ P Y +
Sbjct: 313 GQGRIVLPGYYASFRPPRGEAATRVEASRGELFYYVVSDGSPKPYRLRMITPSYRAIYVF 372
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ LCKG + AD+ +I GSLD E DR
Sbjct: 373 KNLCKGARYADIVSIYGSLDYFPPEADR 400
>gi|322419368|ref|YP_004198591.1| NADH-ubiquinone oxidoreductase chain 49kDa [Geobacter sp. M18]
gi|320125755|gb|ADW13315.1| NADH-ubiquinone oxidoreductase chain 49kDa [Geobacter sp. M18]
Length = 358
Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats.
Identities = 108/389 (27%), Positives = 177/389 (45%), Gaps = 33/389 (8%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
T+ FGPQHP + L L+ EIV + P +G +HRG EK+ E + Q + +R
Sbjct: 3 RTTLPFGPQHPVLPEPIHFSLVLEDEIVVQAIPKLGYVHRGLEKMAEIRDHNQMIQIVER 62
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ Y +E L+G+++P R + +R +++E+ RI SHLL + A G +
Sbjct: 63 TCGICSTLHAMCYCQGIEALMGVQVPDRAKFLRTVWAEMHRIHSHLLWLGLLADAFGFES 122
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
+ + RE++M E SG+R+ + + GGV +DI PE + I + +
Sbjct: 123 LFMQAWRIRERIMDLQEATSGNRVIVSVNQVGGVKRDIKPETQKWILDTLKLVEKEVLQL 182
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
L + K+R V IG + E A+ G G M+R SG D+R+ Y Y LDF
Sbjct: 183 KSTLMDDYTVKKRTVGIGVLSKEKAFALGACGPMLRASGIPQDMRQLG-YAAYPFLDFAP 241
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
+ GD Y R + R E+ + + +IRQ +L V+
Sbjct: 242 VVETDGDSYARTVCRFNEILQGIDLIRQAFAKLPEGELSVKVTG---------------- 285
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
+P GEV + VE P+GE Y+ ++G R +IR P ++++
Sbjct: 286 ----------------LPTGEVVSRVEQPRGECMYYIKANGKKFLDRLRIRTPTFSNVAP 329
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ L G +LADV ++ ++D +R
Sbjct: 330 LLELLPGCELADVPVLILTIDPCISCTER 358
>gi|288961305|ref|YP_003451644.1| NADH dehydrogenase (ubiquinone) [Azospirillum sp. B510]
gi|288913613|dbj|BAI75100.1| NADH dehydrogenase (ubiquinone) [Azospirillum sp. B510]
Length = 571
Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats.
Identities = 105/397 (26%), Positives = 167/397 (42%), Gaps = 32/397 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ K + + GP H + L +DGE + D + +HRG EK+ ET+ +
Sbjct: 174 INEAKQETRVVPLGPLHITSDEPGHFRLFVDGEDIIDADYRMFYVHRGMEKVAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
DR+ + AYA +VE LGI++P R Q IR + E R+ SHLLN+
Sbjct: 234 DVTFLADRVCGICGYAHSVAYASSVENALGIKVPPRAQAIRSILLETERMHSHLLNLGLV 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
+G T + F REK M E +G+R A GGV +DI +
Sbjct: 294 CHFIGFDTGFMQFFRVREKAMTLAELLTGARKTYALNLIGGVRRDILGDQQAKTRELVAE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ + D+L R +G + + A + G ++RGSG D R +
Sbjct: 354 LRDDVTRLVDVLLSTANVSGRVKGVGRLDPQIARDYSPVGPVVRGSGHRRDTRADHAFAG 413
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y LD + + + D R LVR+ E +S+ II +++ GPV D VP
Sbjct: 414 YKLLDMPVHVEQGCDVLSRTLVRVAEFFDSLWIIETLLDKAPA----GPVLTEDFTYVPH 469
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
K A EAP+GE + ++ K YR + RA
Sbjct: 470 KFAL---------------------------GFTEAPRGEDIHWSMTGDNQKLYRWRCRA 502
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Y + + ++ +G+ ++D I+GS+D + DR
Sbjct: 503 STYNNWPVLRYMLRGNTVSDAPLIVGSIDPCYSCTDR 539
>gi|332344307|gb|AEE57641.1| hydrogenase-4, subunit G [Escherichia coli UMNK88]
Length = 571
Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats.
Identities = 109/398 (27%), Positives = 171/398 (42%), Gaps = 34/398 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E GSR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A + G +IRGSG A DLR PY
Sbjct: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQIAREYSPVGPLIRGSGFARDLRFDHPYAD 413
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 414 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 458
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 459 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 501
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 502 AAAYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 539
>gi|15897264|ref|NP_341869.1| NADH dehydrogenase subunit D [Sulfolobus solfataricus P2]
gi|284174513|ref|ZP_06388482.1| NADH dehydrogenase subunit D [Sulfolobus solfataricus 98/2]
gi|13813469|gb|AAK40659.1| NADH dehydrogenase subunit D (NuoD) [Sulfolobus solfataricus P2]
gi|261601933|gb|ACX91536.1| NADH dehydrogenase (quinone) [Sulfolobus solfataricus 98/2]
Length = 410
Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats.
Identities = 136/387 (35%), Positives = 209/387 (54%), Gaps = 5/387 (1%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+N GPQHP + G +R+ ++L+G+I+E VD +G +HR EKL E + ++ +P +R
Sbjct: 29 ELNVGPQHPGS-GHMRIFVKLNGDIIEDVDLDVGYVHRAVEKLSENRNYMHLIPLVERPA 87
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ ++ Y +AVEK+LG+++P R Q +R +E+ RI SHL + A+ +G T
Sbjct: 88 ILDSIHMNLGYIIAVEKILGVDVPERAQYLRSFAAEVNRIASHLYGLGILAIFLGHSTGF 147
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+WGF +RE + E +G+R+ +Y PGGV +DI E+ E L D
Sbjct: 148 MWGFGDREVWVTILEALTGARVTNSYVIPGGVRKDITQEIKEMTIKAIAYQRKRLEDWKK 207
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ N + R N+G + E+A WG G +R SG +D+RK +PY Y +LDF+IP+
Sbjct: 208 IFFYNPSIRARLENVGVMSRENAIKWGAVGPNLRASGVYYDVRKIEPYGAYDKLDFEIPV 267
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
K GD R LVR+ E+ +S++I+ Q + + N +S K +PP R K
Sbjct: 268 YKEGDGLARGLVRLEEIEQSMRILEQIIKNIPEGNI---LSDRFFKQIPPIRLK-KYWET 323
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
Y + P GE + VEA +GE Y++SDG KPYR ++ P Y + +
Sbjct: 324 YRRIVLPGYYASFRPPKGEAISRVEAGRGELAYYVVSDGSPKPYRLRMITPSYRLIYVFK 383
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVDR 396
LCKG + AD+ +I GSLD E DR
Sbjct: 384 ELCKGSRYADLVSIYGSLDYFPPEADR 410
>gi|46578846|ref|YP_009654.1| ech hydrogenase subunit EchE [Desulfovibrio vulgaris str.
Hildenborough]
gi|120603548|ref|YP_967948.1| NADH dehydrogenase (ubiquinone) [Desulfovibrio vulgaris DP4]
gi|46448258|gb|AAS94913.1| Ech hydrogenase, subunit EchE, putative [Desulfovibrio vulgaris
str. Hildenborough]
gi|120563777|gb|ABM29521.1| ech hydrogenase subunit E [Desulfovibrio vulgaris DP4]
gi|311232710|gb|ADP85564.1| NADH-ubiquinone oxidoreductase chain 49kDa [Desulfovibrio vulgaris
RCH1]
Length = 358
Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats.
Identities = 108/389 (27%), Positives = 177/389 (45%), Gaps = 33/389 (8%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
I FGPQHP L L L ++ E V P +G +HRG E L + + Q V +R
Sbjct: 3 RTIIPFGPQHPVLPEPLHLKLVVEDETVVEAIPALGYVHRGLETLASIRDYNQMVYVVER 62
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ + Y ++E ++ +E+P R +++R ++SE+ RI SHLL + A G +
Sbjct: 63 VCGICSCIHAMCYCQSLECMMNVEVPRRAKVLRTIWSELHRIHSHLLWLGLFADGFGFES 122
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
+ ++ RE++M E +G+R+ + GGV +D+ PE + I + + +
Sbjct: 123 LFMQFWKVRERVMDINEATAGNRVVISTNIVGGVRRDLSPEHQKWILDEMNHLEREIRAL 182
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ + +R +G + + A G G M+RGSG A D R+ Q Y + ELDF+
Sbjct: 183 MTTILDDYTVCKRTKGVGVLTAQQAIQLGAVGPMLRGSGVAQDARQLQ-YAAFDELDFEP 241
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
GD + R VR +E+ +SV ++RQ +++L V
Sbjct: 242 IAVPDGDSWARCKVRFLEVLQSVDLVRQAISKLPDTELSVKV------------------ 283
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
P GEV A VE P+GE Y+ +G R +IR P +A++
Sbjct: 284 --------------PGKPEGEVVARVEQPRGELMYYVKGNGSKHLERVRIRTPTFANIPP 329
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + G QLADV + S+D +R
Sbjct: 330 LLAIMGGLQLADVPVAVLSIDPCISCTER 358
>gi|260592326|ref|ZP_05857784.1| proton-translocating NADH-quinone oxidoreductase, D subunit
[Prevotella veroralis F0319]
gi|260535713|gb|EEX18330.1| proton-translocating NADH-quinone oxidoreductase, D subunit
[Prevotella veroralis F0319]
Length = 524
Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats.
Identities = 133/391 (34%), Positives = 197/391 (50%), Gaps = 29/391 (7%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+F +N GPQHP+ HGVLRL LDGE V ++ PH+G +HRG EKL E T+ Q +
Sbjct: 163 DDNFVVNIGPQHPSTHGVLRLQTILDGETVTKIYPHLGYIHRGIEKLCEQFTYPQTLALT 222
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DR++Y++ M HA +E+ +GIE+ R IR + E+ RI +HLL A D+GA
Sbjct: 223 DRMNYLSAMMHRHALVGVIEEGMGIELSERILYIRTIMDELQRIDNHLLYTACCAQDLGA 282
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
LT L+G +RE ++ E +G R+ Y+R GG+ DI P V ++ C +
Sbjct: 283 LTAFLYGMRDREHVLNVMEETTGGRLIQNYYRIGGLQADIDPNFVSNVKQLCKYLRPMIQ 342
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ D+ N I QR +G + +D +G +G R SG D+RK+ PY Y ++DF
Sbjct: 343 EYVDVFGDNVITHQRFEGVGVMDEKDCISYGVTGPAGRASGWKNDVRKNHPYAMYDKVDF 402
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
D +GD DRY + E+ +S+ II Q ++ + G I+
Sbjct: 403 DEITLTNGDSMDRYFCHIKEIYQSLNIIEQLIDNI----PEGEFYIKQKPII-------- 450
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
VP G+ Y +VE GEFG YL S G YR K R G +
Sbjct: 451 -----------------KVPEGQWYFSVEGASGEFGAYLDSRGDKTAYRLKFRPMGLTLV 493
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AM+ + +G ++AD+ +LD V ++DR
Sbjct: 494 GAMDKMLRGQKIADLVTTGAALDFVIPDIDR 524
>gi|260913688|ref|ZP_05920164.1| hydrogenase-4 component G [Pasteurella dagmatis ATCC 43325]
gi|260632227|gb|EEX50402.1| hydrogenase-4 component G [Pasteurella dagmatis ATCC 43325]
Length = 574
Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats.
Identities = 109/395 (27%), Positives = 169/395 (42%), Gaps = 34/395 (8%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETK-TFLQAV 62
+K + GP H + L +DGE + D + +HRG EKL ET+ + Q
Sbjct: 180 EKGEGRIVPVGPLHITSDEPGHFRLFVDGEDIVDADYRLFYVHRGMEKLAETRMDYDQVT 239
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
DR+ + AYA +VE LG+ +P R Q IR L E+ R+ SH+LN+ +
Sbjct: 240 FLADRVCGICGFTHSVAYANSVENALGLIVPERAQWIRALLLEVERLHSHMLNIGLSSHF 299
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VG T + F REK M E +G+R GG+ +DI E
Sbjct: 300 VGFDTGFMQFFRVREKSMTLAEILTGARKTYGINLIGGIRRDILKEQRNTCIQLIREMRQ 359
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++ D+L KQR VNIG ++ + A + G ++RGSG D+RK P+ Y +
Sbjct: 360 GFTELIDILLNTPNMKQRTVNIGRLESQIARDYSPVGPLVRGSGFKRDVRKYHPFSSYDK 419
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+ FD D + R VR+ E E + ++ V+ L
Sbjct: 420 IPFDTYHADSCDVFGRLSVRIKETFECMNMVEYMVDNLPEGP------------------ 461
Query: 303 DMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
L +EG+ P EAP+GE + + K YR + RA
Sbjct: 462 --------------LLSEGFTYKPHKFALGITEAPRGEDIHWSMLGDNQKLYRWRCRAAT 507
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YA+ + ++ +G+ ++D I+GS+D + DR
Sbjct: 508 YANWPVLRYMLRGNTVSDAPLIIGSVDPCYSCTDR 542
>gi|320100264|ref|YP_004175856.1| NADH-ubiquinone oxidoreductase subunit 49kDa [Desulfurococcus
mucosus DSM 2162]
gi|319752616|gb|ADV64374.1| NADH-ubiquinone oxidoreductase chain 49kDa [Desulfurococcus mucosus
DSM 2162]
Length = 545
Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats.
Identities = 115/388 (29%), Positives = 168/388 (43%), Gaps = 35/388 (9%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETK-TFLQAVPYFDRLD 69
I GP HPA H L +DGE + V +HRG EKL E++ T+ Q +R+
Sbjct: 173 IPVGPYHPALHEPEYFELYVDGERIVDVKYRGFHVHRGIEKLGESRMTYQQVNFLAERIC 232
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ YALAVEK +++P R Q IR + E+ RI SHLL + +G
Sbjct: 233 GICGFEHSTCYALAVEKAAKLDVPERAQFIRSIVLEVERIHSHLLWLGVAFHTLGYDAGF 292
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ + RE++M E +GSR GGV +DI E + I D
Sbjct: 293 MHMWRIRERIMELAEMLTGSRKTYGINMVGGVRRDINEEKRRKVIEVLSELEKEYWKIID 352
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ K+R G + E A G G + R SG D R+ PY Y + F +P+
Sbjct: 353 VAVNVPQVKKRLSGTGVLPKEWAVKLGVEGPVARASGVDKDARRDLPYAAYKHVSFKVPV 412
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD R LVR+ E +ES+ +I Q ++ L GP+
Sbjct: 413 YTEGDNMARTLVRIEETKESMSMIIQLLDML----PKGPIML------------------ 450
Query: 310 SLIHHFKLYTEGYHVPVGE-VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
E Y +P G VEAP+G Y+++ G +PYR ++RAP Y ++ A+
Sbjct: 451 ----------EEYEIPEGRIGVQVVEAPRGGDVHYVLT-GRGRPYRWRVRAPTYNNIPAL 499
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + LAD + S+D F DR
Sbjct: 500 RIMLRDQPLADAPLTIASIDPCFSCTDR 527
>gi|21228426|ref|NP_634348.1| ech hydrogenase subunit [Methanosarcina mazei Go1]
gi|20906903|gb|AAM32020.1| Ech Hydrogenase, Subunit [Methanosarcina mazei Go1]
Length = 358
Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats.
Identities = 118/389 (30%), Positives = 181/389 (46%), Gaps = 32/389 (8%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
+ I FGPQHP + L LELD +IV P IG +HRG EK I+TK ++Q +R
Sbjct: 2 TTVIPFGPQHPVLPEPVALKLELDDDIVVGALPSIGYVHRGLEKFIDTKDYVQTTYICER 61
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ + Y AVEKL +E P R Q IRV+ E+ R+ SHLL + A G +
Sbjct: 62 ICGICSALHGITYTRAVEKLFDLEPPERAQYIRVIVGELNRLHSHLLWLGLFADGFGFES 121
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
++ RE + ER G+R+ + + GGV +D+ E + + CD+ + +I
Sbjct: 122 LFYECWKYREGVQDAAERICGNRVIHSISKVGGVTRDLTKEHTDMLLKLCDTLEDQVKNI 181
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ N K+R +G + + A+ G +G +RGS A D+R + Y +L F
Sbjct: 182 EKVFVNNYTVKKRTKGLGVMSKQVAYELGTAGPTLRGSDNAIDVRDIDDWAIYKDLGFKT 241
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
+ K GDCY R VR+ E+ S++IIR ++RL + PV
Sbjct: 242 AVEKDGDCYSRTKVRINEVLNSIEIIRNAISRLPNGDISVPVKGF--------------- 286
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
P GE E P+GE Y+ +G R KIR P +A++ +
Sbjct: 287 -----------------PTGEAIMRTEQPRGEVVYYVKGNGTKNLERLKIRTPTFANIPS 329
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + G +LADV I+ ++D +R
Sbjct: 330 LLVMLPGVKLADVPIIVLTIDPCISCTER 358
>gi|227828040|ref|YP_002829820.1| NADH dehydrogenase subunit D [Sulfolobus islandicus M.14.25]
gi|238620270|ref|YP_002915096.1| NADH dehydrogenase subunit D [Sulfolobus islandicus M.16.4]
gi|227459836|gb|ACP38522.1| NADH dehydrogenase (quinone) [Sulfolobus islandicus M.14.25]
gi|238381340|gb|ACR42428.1| NADH dehydrogenase (quinone) [Sulfolobus islandicus M.16.4]
Length = 410
Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats.
Identities = 135/387 (34%), Positives = 209/387 (54%), Gaps = 5/387 (1%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+N GPQHP + G +R+ ++L+G+I+E VD +G +HR EKL E + ++ +P +R
Sbjct: 29 ELNVGPQHPGS-GHMRIFVKLNGDIIEDVDLDVGYVHRTVEKLSENRNYMHLIPLVERPA 87
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ ++ Y +AVEK+LG++IP R Q +R +E+ RI SHL + ++ +G T
Sbjct: 88 ILDSIHMNLGYIIAVEKILGVDIPERAQYLRSFAAEVNRIASHLYGLGILSIFLGHSTGF 147
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+WGF +RE + E +G+R+ +Y PGGV +DI E+ + L D
Sbjct: 148 MWGFGDREVWVTILEALTGARVTNSYVIPGGVRRDISQEIKDMTLKAISYQRRRLEDWKK 207
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ N + R N+G + E+A WG G +R SG +D+RK +PY Y +LDF+IP+
Sbjct: 208 IFFYNPSIRARLENVGVMSKENAIKWGAVGPNLRASGVYYDVRKIEPYGAYDKLDFEIPV 267
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
K GD R LVR+ E+ +S++I+ Q + + N +S K +PP R K
Sbjct: 268 YKEGDGLARGLVRLEEIEQSMRILEQIIKNIPEGNI---LSDRFFKQIPPTRLK-KYWET 323
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
Y + P GE + VEA +GE Y++SDG KPYR ++ P Y + +
Sbjct: 324 YRRIVLPGYYASFRPPKGEAISRVEAGRGELVYYVVSDGSPKPYRLRMITPSYRSIYVFK 383
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVDR 396
LCKG + AD+ +I GSLD E DR
Sbjct: 384 ELCKGSRYADLVSIYGSLDYFPPEADR 410
>gi|303237734|ref|ZP_07324294.1| respiratory-chain NADH dehydrogenase, 49 Kd subunit [Prevotella
disiens FB035-09AN]
gi|302482186|gb|EFL45221.1| respiratory-chain NADH dehydrogenase, 49 Kd subunit [Prevotella
disiens FB035-09AN]
Length = 524
Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats.
Identities = 139/391 (35%), Positives = 202/391 (51%), Gaps = 29/391 (7%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
F +N GPQHP+ HGVLRL LDGE V+R+ PH+G +HRG EK+ E+ T+ Q +
Sbjct: 163 DDEFVVNIGPQHPSTHGVLRLQTILDGEKVKRIYPHLGYIHRGIEKMCESYTYPQTLALT 222
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DR++Y++ M HA +E+ +GIE+ R Q IR + E+ RI +HLL + A D+GA
Sbjct: 223 DRMNYLSAMMHRHALVGVIEEAMGIELTDRIQYIRTIMDELQRIDNHLLYTSCCAQDLGA 282
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
LT L+G +RE ++ E +G R+ Y+R GG+ DI P V + C +
Sbjct: 283 LTGMLYGMRDREHVLNVMEETTGGRLIQNYYRIGGLQDDIDPNFVANTKALCKYLRPMIQ 342
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ D+ N I QR NIGT+ ED + +G R SG D+RK PY Y+++DF
Sbjct: 343 EYLDVFGDNIITHQRFENIGTMNQEDCISYAVTGPAGRASGWRNDVRKYHPYAVYNKVDF 402
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ + +GD DRY + EM +S+ II Q ++ + G I+
Sbjct: 403 EEVVMSNGDSMDRYYCHIKEMYQSLDIIEQLIDNI----PEGDFYIKQKPII-------- 450
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
VP G+ Y +VE GEFG YL S G PYR K R G +
Sbjct: 451 -----------------KVPEGQWYFSVEGASGEFGAYLDSRGDKSPYRLKFRPMGLTLV 493
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AM+ + KG ++AD+ +LD V ++DR
Sbjct: 494 GAMDKMLKGQKIADLVTTGAALDFVIPDIDR 524
>gi|228930303|ref|ZP_04093309.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis serovar pondicheriensis BGSC
4BA1]
gi|228829362|gb|EEM74993.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis serovar pondicheriensis BGSC
4BA1]
Length = 346
Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats.
Identities = 147/372 (39%), Positives = 209/372 (56%), Gaps = 28/372 (7%)
Query: 24 LRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALA 83
RL++++DGEI++ P IG LHRGTEK+ E+ + Q +PY DR+DY++ M + A
Sbjct: 2 FRLVIKIDGEIIKEATPVIGYLHRGTEKIAESLQYTQIIPYTDRMDYLSAMTNNYVICHA 61
Query: 84 VEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFY 143
VE ++G+EIP R + +RVL E+GRI SHL+ T +D+GA++P L+ F ERE ++
Sbjct: 62 VETMMGLEIPERAEYLRVLAMELGRIASHLVWWGTNLLDIGAVSPFLYAFREREMIINLL 121
Query: 144 ERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVN 203
G+R+ Y R GGV D P +E + + L DL++GN IF R
Sbjct: 122 NELCGARLTFNYMRVGGVKWDAPDGWIEKVKEFVPYMREQLAGYHDLVSGNEIFLNRVKG 181
Query: 204 IGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRM 263
+G E+A + SG +R +G WDLRK +PY Y DFDIP+G GD +DRY+ RM
Sbjct: 182 VGIYSAEEAISYSLSGANLRCTGVNWDLRKDEPYSIYDRFDFDIPVGSVGDAWDRYVCRM 241
Query: 264 MEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYH 323
E+ ES+KI+ Q V + K G V A PKI+
Sbjct: 242 QEIEESLKIVEQAVRQFP---KEGAVLAKVPKII-------------------------K 273
Query: 324 VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAI 383
P GE + +E+P+GE G Y+ SDG +PYR K R P + +LQ + L KG +A++ I
Sbjct: 274 APKGEAFVRIESPRGEIGCYIASDGKKEPYRLKFRRPSFYNLQILPKLLKGENIANLITI 333
Query: 384 LGSLDIVFGEVD 395
LG +DIV GEVD
Sbjct: 334 LGGVDIVLGEVD 345
>gi|311896794|dbj|BAJ29202.1| putative NADH-quinone oxidoreductase subunit D [Kitasatospora setae
KM-6054]
Length = 387
Score = 327 bits (839), Expect = 2e-87, Method: Composition-based stats.
Identities = 135/392 (34%), Positives = 206/392 (52%), Gaps = 28/392 (7%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
S +N GPQHP+ HGVLRL L LDGE + +P IG +HRG EKL E + + Q V
Sbjct: 21 STDMVLNIGPQHPSTHGVLRLKLVLDGERITSAEPVIGYMHRGAEKLFEARDYRQIVMLA 80
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
+R D+++ E LAVE++LG+E+P R +R L +E+ R+L+HL+ + + +++G
Sbjct: 81 NRHDWLSAFANELGVVLAVERMLGMEVPERAVWLRTLLAELNRVLNHLMFLGSYPLELGG 140
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+TP F RE+L E ASG RMH + R GG+ +D+P + + L
Sbjct: 141 ITPIFHSFNGREELQHVLEEASGGRMHYMFNRVGGLKEDLPAGWLGRVRRAVGVVRGQLP 200
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
DL+ GN IF+ R +G + E +G SG + R SG +DLR+ +PY Y EL
Sbjct: 201 VFEDLVLGNEIFRGRTAGVGVLSREHVHAYGVSGPIARASGVDFDLRRDEPYLAYGELRD 260
Query: 246 --DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+ + + GDC R+ + + ++ + C++RL + GPV+ PK++
Sbjct: 261 VLKVAVREEGDCLARFECLLEQTGNALDLADACLDRL-AELPAGPVNLRLPKVL------ 313
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
P GE YA E P G G YL+S G P+R K+R+ +
Sbjct: 314 -------------------KAPEGETYAWTENPLGLNGYYLVSRGEKTPWRLKLRSASFN 354
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
++QA+ L G +AD+ AILGS+ V G++D
Sbjct: 355 NVQALTELLPGTLVADMVAILGSMFFVVGDID 386
>gi|289827446|ref|ZP_06546058.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Typhi str. E98-3139]
Length = 566
Score = 327 bits (839), Expect = 2e-87, Method: Composition-based stats.
Identities = 135/361 (37%), Positives = 202/361 (55%), Gaps = 5/361 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +
Sbjct: 210 TDNEDFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 269
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 270 PYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQD 329
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + + P
Sbjct: 330 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLEWMPK 389
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R+ + ++A WG +G +R +G +D+RK +PY Y
Sbjct: 390 RLDSYEKAALRNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKWRPYSGYEN 449
Query: 243 LDFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF++P+ G DCY R ++++ E+R+S++I++QC++ + GP A P PP +
Sbjct: 450 FDFEVPVGGGVSDCYTRVMLKVEELRQSLRILQQCLDNM----PEGPFKADHPLTTPPPK 505
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ +E+LI HF + G +P E + VEA KG YL SDG YR ++R P
Sbjct: 506 ERTLQHIETLITHFLQVSWGPVMPAQESFQMVEATKGINSYYLTSDGSTMSYRTRVRTPS 565
Query: 362 Y 362
+
Sbjct: 566 F 566
>gi|153004153|ref|YP_001378478.1| NADH dehydrogenase (quinone) [Anaeromyxobacter sp. Fw109-5]
gi|218534383|sp|A7H9U8|NUOD1_ANADF RecName: Full=NADH-quinone oxidoreductase subunit D 1; AltName:
Full=NADH dehydrogenase I subunit D 1; AltName:
Full=NDH-1 subunit D 1
gi|152027726|gb|ABS25494.1| NADH dehydrogenase (quinone) [Anaeromyxobacter sp. Fw109-5]
Length = 381
Score = 327 bits (839), Expect = 2e-87, Method: Composition-based stats.
Identities = 146/399 (36%), Positives = 216/399 (54%), Gaps = 32/399 (8%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ + +NFGPQHP+ HGV+ I+E DGE+++R P +G LHR EK+ E + +
Sbjct: 10 DRNNEEMVLNFGPQHPSTHGVINFIVETDGEVMKRAIPDVGYLHRSIEKIGEVTGYPGFM 69
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P+ DR+DYVA M YA+AVEKLL +E+P R Q +R + E+ RI SHL+ V T MD
Sbjct: 70 PFTDRIDYVAAMFANEGYAIAVEKLLKVEVPPRAQWLRAISGELVRIASHLIAVGTMTMD 129
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA TP + G ERE++ + E G+R+ Y R GGV D+P + + + D F
Sbjct: 130 IGAFTPMVHGLREREEINDYIEALCGARLTYNYHRIGGVAFDLPEGWRDKVLAFLDRFDK 189
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L + L+T N I+K+R N+ T+ E A +G G +RGSG WD+R+ PY Y
Sbjct: 190 FLPEFDRLITFNEIYKKRLANVATISREQAISYGLVGPNLRGSGVDWDIRRDLPYGAYPN 249
Query: 243 LDFDIPIGK-----HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIV 297
F++P+GK GDC+DRY VR +EM+ES +I+RQ + +
Sbjct: 250 FQFEVPVGKGWAGTVGDCFDRYYVRCLEMKESSRIVRQALETIGQTP------------- 296
Query: 298 PPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKI 357
D+ GEV + VE+ +GE Y++SDG NK YR +
Sbjct: 297 ----EDIMA----------KVPRNVKPEAGEVLSRVESARGEMAYYVVSDGTNKAYRLRS 342
Query: 358 RAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
R + + +E + G +AD+ A++ SLD+V E+DR
Sbjct: 343 RTGSFTAMSIIEDISGGLMVADLVALISSLDVVAPEIDR 381
>gi|320667574|gb|EFX34489.1| hydrogenase 4, subunit [Escherichia coli O157:H7 str. LSU-61]
Length = 571
Score = 327 bits (839), Expect = 2e-87, Method: Composition-based stats.
Identities = 109/398 (27%), Positives = 172/398 (43%), Gaps = 34/398 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGNSGARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E +GSR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A + G +IRGSG A DLR PY
Sbjct: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQIARDYSPVGPLIRGSGFARDLRFDHPYAD 413
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 414 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 458
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 459 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 501
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 502 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYYCTDR 539
>gi|218884332|ref|YP_002428714.1| NADH dehydrogenase (ubiquinone), 30 kDa subunit [Desulfurococcus
kamchatkensis 1221n]
gi|218765948|gb|ACL11347.1| NADH dehydrogenase (ubiquinone), 30 kDa subunit [Desulfurococcus
kamchatkensis 1221n]
Length = 545
Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats.
Identities = 113/388 (29%), Positives = 169/388 (43%), Gaps = 35/388 (9%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETK-TFLQAVPYFDRLD 69
+ GP HPA H L ++GE + V +HRG EKL E++ T+ Q +R+
Sbjct: 170 VPIGPYHPALHEPEYFELYVEGERILDVKYRGFHVHRGIEKLAESRMTYQQVNFLAERIC 229
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ YALAVEK +++P R Q IR + E+ R+ SHLL + +G
Sbjct: 230 GICGFEHSTCYALAVEKAAKLDVPERAQFIRSIVLEVERLHSHLLWLGVAFHTLGYDAGF 289
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ + REK+M E +GSR GGV +DI E + + + I D
Sbjct: 290 MHMWRIREKVMELAEALTGSRKTYGINMVGGVRRDINEEKRKKTIEVLNELEKEFSKIID 349
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ K+R G + E A G G + R SG D R+ PY Y F +P+
Sbjct: 350 VAISVPQVKKRLTGTGVLPKEWAVKLGVEGPVARASGVDRDARRDLPYAAYKHASFKVPV 409
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD R LVR+ E++ES+ II Q ++ + GP+
Sbjct: 410 YTEGDNMARALVRVDEVKESMSIIIQLLDAIPR----GPIMLDK---------------- 449
Query: 310 SLIHHFKLYTEGYHVPVGE-VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
Y +P G VEAP+G Y+++ G KPYR ++RAP Y ++ A+
Sbjct: 450 ------------YEIPEGRIGVQVVEAPRGGDIHYVLT-GKGKPYRWRVRAPTYNNIPAL 496
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + LAD + S+D F DR
Sbjct: 497 RIMLRDQSLADAPLTIASIDPCFSCTDR 524
>gi|255691140|ref|ZP_05414815.1| proton-translocating NADH-quinone oxidoreductase, D subunit
[Bacteroides finegoldii DSM 17565]
gi|260623233|gb|EEX46104.1| proton-translocating NADH-quinone oxidoreductase, D subunit
[Bacteroides finegoldii DSM 17565]
Length = 530
Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats.
Identities = 146/390 (37%), Positives = 213/390 (54%), Gaps = 29/390 (7%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+ +N GPQHPA HGV+R + L+GEI+ ++D + G +HRG EK+ E+ T+ Q + D
Sbjct: 170 EEYVVNIGPQHPATHGVMRFRVSLEGEIIRKIDANCGYIHRGIEKMNESLTYPQTLALTD 229
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDY+ HA + +EK +GIE+ R Q IR + E+ RI SHLL + AMD+GAL
Sbjct: 230 RLDYLGAHQNRHALCMCIEKAMGIEVSERVQYIRTIMDEMQRIDSHLLFYSCLAMDLGAL 289
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
T +GF +REK++ +E G R+ Y GGV D+ P V+ + + +++
Sbjct: 290 TAFFYGFRDREKILDIFEETCGGRLIMNYNTIGGVQADLHPNFVKRVKEFIPYLRGVIHE 349
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
D+ TGN I + R +G + EDA +G +G R SG A D+RK PY Y ++DF
Sbjct: 350 YHDIFTGNIIAQSRMKGVGILSREDAISFGCTGGTGRASGWACDVRKRMPYGVYDKVDFK 409
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
I GDC+ RYLVRM E+ ES+ II Q ++ + GP I+
Sbjct: 410 EIIYTEGDCFARYLVRMDEIMESLNIIEQLIDNI----PEGPYQEKMKPII--------- 456
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
VP G YAAVE +GEFGV+L S G PYR R+ G +
Sbjct: 457 ----------------RVPEGSYYAAVEGSRGEFGVFLESQGDKTPYRLHYRSTGLPLVA 500
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A++ +C+G ++AD+ AI G++D V ++DR
Sbjct: 501 AIDTICRGAKIADLIAIGGTIDYVVPDIDR 530
>gi|227357423|ref|ZP_03841777.1| hydrogenase-4, G subunit [Proteus mirabilis ATCC 29906]
gi|227162381|gb|EEI47381.1| hydrogenase-4, G subunit [Proteus mirabilis ATCC 29906]
Length = 577
Score = 326 bits (837), Expect = 3e-87, Method: Composition-based stats.
Identities = 104/397 (26%), Positives = 170/397 (42%), Gaps = 32/397 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ K + + GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 180 VNEGKQDARVVPIGPMHITSDEPGHFRLFVDGENIVDADYRMFYVHRGMEKLAETRMGYN 239
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 240 EVTFLSDRVCGICGFTHSVAYTTSVENALGIEVPRRAHTIRSILLEVERLHSHLLNIGLA 299
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
+ G T + F REK M E +G+R GG+ +DI +
Sbjct: 300 SHFTGFDTGFMQFFRIREKSMQIAEMLTGARKTYGLNLIGGIRRDILKDQRIKTIQLVRE 359
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++ D+L +QR V +G + + A + G MIR SG D+R P+
Sbjct: 360 MRKEVTELVDILLSAPNMEQRTVGVGILDKKVARDFSPVGPMIRASGFKRDVRFDHPFAD 419
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y L + + GD + R +VR+ E+ +S+ +I ++ L GP+ P
Sbjct: 420 YGNLPLTLFSYEGGDVFSRVMVRIKEVLDSMAMIEYALDNL----PEGPLLTEGFTYQPY 475
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
K A EAP+GE + + K +R + RA
Sbjct: 476 KFAL---------------------------GFTEAPRGEDIHWSMLGDNQKLFRWRCRA 508
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 509 ATYANWPVLRYMLQGNTVSDAPLIIGSLDPCYSCTDR 545
>gi|281419771|ref|ZP_06250770.1| proton-translocating NADH-quinone oxidoreductase, D subunit
[Prevotella copri DSM 18205]
gi|281406147|gb|EFB36827.1| proton-translocating NADH-quinone oxidoreductase, D subunit
[Prevotella copri DSM 18205]
Length = 523
Score = 326 bits (837), Expect = 3e-87, Method: Composition-based stats.
Identities = 128/392 (32%), Positives = 197/392 (50%), Gaps = 29/392 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ +N GP HP+ HGVLRL +DGE V+R+ PH+G +HRG EK+ E T+ Q +
Sbjct: 161 DENDYVVNIGPNHPSTHGVLRLQTVIDGETVKRIYPHLGYIHRGIEKMWENMTYPQTLAL 220
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRL+Y++ M HA +E+ +GIE+ R + IR + E+ RI SHLL + A D+G
Sbjct: 221 TDRLNYLSAMMHRHALVGVIEEAMGIELSDRIRYIRTIMDELQRIDSHLLYLGCTAQDLG 280
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
ALT L+ +RE ++ E +G R+ Y+R GG+ DI P V+++ C +
Sbjct: 281 ALTAFLYCMRDREHVLNVMEETTGGRLIQNYYRIGGLQADIDPNFVQNVKTLCKYLRPMI 340
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ D+ N I R +G + LED + +G R SG D RK PY+ Y +++
Sbjct: 341 QEYLDVFGDNVITHNRLEGVGPMNLEDCINYAVTGPAGRASGWKNDTRKRHPYDMYDKVE 400
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
+ D DRY V + E+ +S+ II Q ++ + G I+
Sbjct: 401 WKEITLTGCDSMDRYYVHIQELYQSLDIIEQLIDNI----PEGEYYIKQKPII------- 449
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
VP G+ Y +VE GEFGVYL S G PYR K+R G +
Sbjct: 450 ------------------KVPEGQWYFSVEGASGEFGVYLDSKGDKSPYRMKMRPMGLSL 491
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A++ + +G ++AD+ ++D V ++DR
Sbjct: 492 TGALDPMLRGQKIADLITTGAAIDFVIPDIDR 523
>gi|197286369|ref|YP_002152241.1| hydrogenase-4 component G [Proteus mirabilis HI4320]
gi|194683856|emb|CAR44989.1| hydrogenase-4 component G [Proteus mirabilis HI4320]
Length = 577
Score = 326 bits (837), Expect = 3e-87, Method: Composition-based stats.
Identities = 104/397 (26%), Positives = 170/397 (42%), Gaps = 32/397 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ K + + GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 180 VNEGKQDARVVPIGPMHITSDEPGHFRLFVDGENIVDADYRMFYVHRGMEKLAETRMGYN 239
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 240 EVTFLSDRVCGICGFTHSVAYTTSVENALGIEVPRRAHTIRSILLEVERLHSHLLNIGLA 299
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
+ G T + F REK M E +G+R GG+ +DI +
Sbjct: 300 SHFTGFDTGFMQFFRIREKSMQIAEMLTGARKTYGLNLIGGIRRDILKDQRIKTIQLVRE 359
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++ D+L +QR V +G + + A + G MIR SG D+R P+
Sbjct: 360 MRKEVTELVDILLSAPNMEQRTVGVGILDKKVARDFSPVGPMIRASGFKRDVRFDHPFAD 419
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y L + + GD + R +VR+ E+ +S+ +I ++ L GP+ P
Sbjct: 420 YGNLPLTLFSYEGGDVFSRVMVRIKEVLDSMAMIEYALDNL----PEGPLLTEGFTYQPY 475
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
K A EAP+GE + + K +R + RA
Sbjct: 476 KFAL---------------------------GFTEAPRGEDIHWSMLGDNQKLFRWRCRA 508
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 509 ATYANWPVLRYMLQGNTVSDAPLIIGSLDPCYSCTDR 545
>gi|189459783|ref|ZP_03008568.1| hypothetical protein BACCOP_00412 [Bacteroides coprocola DSM 17136]
gi|189433512|gb|EDV02497.1| hypothetical protein BACCOP_00412 [Bacteroides coprocola DSM 17136]
Length = 540
Score = 326 bits (837), Expect = 3e-87, Method: Composition-based stats.
Identities = 148/390 (37%), Positives = 206/390 (52%), Gaps = 29/390 (7%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+ F +N GPQHP+ HGVLRL L+GE + +VDP G +HRG EK+ E+ T+ Q + D
Sbjct: 180 QDFVVNIGPQHPSTHGVLRLRTSLNGETISKVDPICGYIHRGIEKMNESLTYPQTLALTD 239
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDY++ HA + +EK GIEI R Q IR + E+ RI SHLL + MD+G L
Sbjct: 240 RLDYLSAHQNRHALCMCIEKAAGIEISERAQYIRTIMDELQRIDSHLLFYSCLVMDMGGL 299
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP +GF ERE ++ +E +G R+ Y GGV D+ P+ + + S + D
Sbjct: 300 TPFFYGFREREMILDIFEETTGGRLIQNYNMIGGVQADLHPDFQRKVKEFIKHLRSVIKD 359
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
D+ TGN I R IG + LEDA G +G R SG A D+RK PY Y ++DF
Sbjct: 360 YHDIFTGNVIATTRLKGIGVLSLEDAISLGVTGGSGRASGWANDVRKHHPYAMYDKVDFK 419
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
GD + RY+VRM E+ ES II Q ++ + G I+
Sbjct: 420 EITYTEGDSFARYMVRMDEIMESCHIIEQLIDNI----PEGEYRVKTKAII--------- 466
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+P G AAVE+ +GEFGV L S G PYR R+ G +
Sbjct: 467 ----------------KLPEGNYSAAVESSRGEFGVMLESHGDKSPYRLHYRSTGLPLVH 510
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A++ +CKG+++AD+ AI G+LD V ++DR
Sbjct: 511 ALDTVCKGNKIADLIAIGGTLDYVIPDIDR 540
>gi|228961560|ref|ZP_04123170.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis serovar pakistani str. T13001]
gi|229153461|ref|ZP_04281639.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus m1550]
gi|228630065|gb|EEK86716.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus m1550]
gi|228798178|gb|EEM45181.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis serovar pakistani str. T13001]
Length = 346
Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats.
Identities = 147/372 (39%), Positives = 209/372 (56%), Gaps = 28/372 (7%)
Query: 24 LRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALA 83
RL++++DGEI++ P IG LHRGTEK+ E+ + Q +PY DR+DY++ M + A
Sbjct: 2 FRLVIKIDGEIIKEATPVIGYLHRGTEKIAESLQYTQIIPYTDRMDYLSAMTNNYVICHA 61
Query: 84 VEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFY 143
VE ++G+EIP R + +RVL E+GRI SHL+ T +D+GA++P L+ F ERE ++
Sbjct: 62 VETMMGLEIPERAEYLRVLAMELGRIASHLVWWGTNLLDIGAVSPFLYAFREREMIINLL 121
Query: 144 ERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVN 203
G+R+ Y R GGV D P +E + + L DL++GN IF R
Sbjct: 122 NELCGARLTFNYMRVGGVKWDAPDGWIEKVEEFVPYMREQLAGYHDLVSGNEIFLNRVKG 181
Query: 204 IGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRM 263
+G E+A + SG +R +G WDLRK +PY Y DFDIP+G GD +DRY+ RM
Sbjct: 182 VGIYSAEEAISYSLSGANLRCTGVNWDLRKDEPYSIYDRFDFDIPVGSVGDAWDRYVCRM 241
Query: 264 MEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYH 323
E+ ES+KI+ Q V + K G V A PKI+
Sbjct: 242 QEIEESLKIVEQAVQQFP---KDGAVLAKVPKII-------------------------K 273
Query: 324 VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAI 383
P GE + +E+P+GE G Y+ SDG +PYR K R P + +LQ + L KG +A++ I
Sbjct: 274 APKGEAFVRIESPRGEIGCYIASDGKKEPYRLKFRRPSFYNLQILPKLLKGENIANLITI 333
Query: 384 LGSLDIVFGEVD 395
LG +DIV GEVD
Sbjct: 334 LGGVDIVLGEVD 345
>gi|228975376|ref|ZP_04135932.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228982012|ref|ZP_04142306.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis Bt407]
gi|228777773|gb|EEM26046.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis Bt407]
gi|228784358|gb|EEM32381.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis serovar thuringiensis str.
T01001]
Length = 346
Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats.
Identities = 147/372 (39%), Positives = 209/372 (56%), Gaps = 28/372 (7%)
Query: 24 LRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALA 83
RL++++DGEI++ P IG LHRGTEK+ E+ + Q +PY DR+DY++ M + A
Sbjct: 2 FRLVIKIDGEIIKEATPVIGYLHRGTEKIAESLQYTQIIPYTDRMDYLSAMTNNYVICHA 61
Query: 84 VEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFY 143
VE ++G+EIP R + +RVL E+GRI SHL+ T +D+GA++P L+ F ERE ++
Sbjct: 62 VETMVGLEIPERAEYLRVLAMELGRIASHLVWWGTNLLDIGAVSPFLYAFREREMIINLL 121
Query: 144 ERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVN 203
G+R+ Y R GGV D P +E + + L DL++GN IF R
Sbjct: 122 NELCGARLTFNYMRVGGVKWDAPDGWIEKVEEFVPYMREQLAGYHDLVSGNEIFLNRVKG 181
Query: 204 IGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRM 263
+G E+A + SG +R +G WDLRK +PY Y DFDIP+G GD +DRY+ RM
Sbjct: 182 VGIYSAEEAISYSLSGANLRCTGVNWDLRKDEPYSIYDRFDFDIPVGSVGDAWDRYVCRM 241
Query: 264 MEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYH 323
E+ ES+KI+ Q V + K G V A PKI+
Sbjct: 242 QEIEESLKIVEQAVQQFP---KDGAVLAKVPKII-------------------------K 273
Query: 324 VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAI 383
P GE + +E+P+GE G Y+ SDG +PYR K R P + +LQ + L KG +A++ I
Sbjct: 274 APKGEAFVRIESPRGEIGCYIASDGKKEPYRLKFRRPSFYNLQILPKLLKGENIANLITI 333
Query: 384 LGSLDIVFGEVD 395
LG +DIV GEVD
Sbjct: 334 LGGVDIVLGEVD 345
>gi|226327311|ref|ZP_03802829.1| hypothetical protein PROPEN_01178 [Proteus penneri ATCC 35198]
gi|225204529|gb|EEG86883.1| hypothetical protein PROPEN_01178 [Proteus penneri ATCC 35198]
Length = 577
Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats.
Identities = 104/397 (26%), Positives = 170/397 (42%), Gaps = 32/397 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ K + + GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 180 VNEGKQDARVVPIGPMHITSDEPGHFRLFVDGENIVDADYRMFYVHRGMEKLAETRMGYN 239
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 240 EVTFLSDRVCGICGFTHSVAYVTSVENALGIEVPRRAHTIRSILLEVERLHSHLLNIGLA 299
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
+ G T + F REK M E +G+R GG+ +DI +
Sbjct: 300 SHFTGFDTGFMQFFRIREKSMQIAEMLTGARKTYGLNLIGGIRRDILKDQRLKTIQLIRE 359
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++ D+L +QR V +G + + A + G MIR SG D+R P+
Sbjct: 360 MRREVTELVDVLLSAPNMEQRTVGVGILDKKVARDFSPVGPMIRASGFKRDVRFDHPFAD 419
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y L + + GD + R +VR+ E+ +S+ +I ++ L GP+ P
Sbjct: 420 YGNLPLTLFSYEGGDVFSRVMVRIKEVLDSMAMIEYALDNL----PEGPLLTEGFTYQPY 475
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
K A EAP+GE + + K +R + RA
Sbjct: 476 KFAL---------------------------GFTEAPRGEDVHWSMLGDNQKLFRWRCRA 508
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 509 ATYANWPVLRYMLQGNTVSDAPLIIGSLDPCYSCTDR 545
>gi|324118169|gb|EGC12066.1| respiratory-chain NADH dehydrogenase [Escherichia coli E1167]
Length = 571
Score = 326 bits (836), Expect = 4e-87, Method: Composition-based stats.
Identities = 109/398 (27%), Positives = 172/398 (43%), Gaps = 34/398 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + + L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGNSDAQVIPVGPLHITSDELGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E GSR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A + G +IRGSG A DLR PY
Sbjct: 354 MRADVSELVEMLLAMPNMEQRTQGIGILDRQIARDYSPVGPLIRGSGFARDLRFDHPYAD 413
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 414 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 458
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 459 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 501
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 502 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 539
>gi|322370547|ref|ZP_08045105.1| NADH dehydrogenase-like complex subunit CD [Haladaptatus
paucihalophilus DX253]
gi|320549964|gb|EFW91620.1| NADH dehydrogenase-like complex subunit CD [Haladaptatus
paucihalophilus DX253]
Length = 552
Score = 326 bits (836), Expect = 4e-87, Method: Composition-based stats.
Identities = 146/397 (36%), Positives = 203/397 (51%), Gaps = 31/397 (7%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFL-QAVPYF 65
+ +N GP HPA HGVL + LDGE V V P IG LHR E++ ++ + + +PY
Sbjct: 180 DTMFLNIGPHHPATHGVLHIETVLDGEQVLDVRPDIGYLHRCEEQMAQSGKYRHEIMPYP 239
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG- 124
DR DY A M E AYA A E L I++P Q++R L E+ R+ H L + T A+DV
Sbjct: 240 DRWDYTANMTNEWAYARAAEDLADIDVPEYAQILRTLGVELSRMTGHFLALGTFALDVYG 299
Query: 125 -ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP---ELVEDIGCWCDSF 180
+ F +RE + E +G RM YFR GGV D+P E + + D
Sbjct: 300 DFTAIFQYAFRDREIVQNILEDLTGQRMMYNYFRLGGVIWDVPEPRREFFDKTLDFIDGL 359
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P+ + + DLLT N IF+ R V+ G ++ + A +G +G + RGSG +DLR+ PY Y
Sbjct: 360 PATMEEYHDLLTSNEIFQLRCVDTGILEPDVAKQYGVTGPVARGSGIDYDLRRDDPYGYY 419
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+LD+D+ D Y R LVR+ E+ +S +I+ QCV L
Sbjct: 420 DQLDWDVVTEDGCDNYARVLVRLREVEQSARIVEQCVELL-------------------- 459
Query: 301 RADMKRSMESLIHHFKLYTEGYHVP-VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
+ E P E Y AVE KGE GVY+ SD + P R KIR+
Sbjct: 460 ----EDWPEEERTLQSNVPRTLKPPMDAETYRAVEGAKGELGVYIRSDNTDSPARFKIRS 515
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
P + +L A+ + +G + D+ A LGSLDIV GEVDR
Sbjct: 516 PCFHNLSALPEMSEGELVPDLIASLGSLDIVLGEVDR 552
>gi|219853282|ref|YP_002467714.1| NADH-ubiquinone oxidoreductase chain 49kDa [Methanosphaerula
palustris E1-9c]
gi|219547541|gb|ACL17991.1| NADH-ubiquinone oxidoreductase chain 49kDa [Methanosphaerula
palustris E1-9c]
Length = 359
Score = 326 bits (836), Expect = 4e-87, Method: Composition-based stats.
Identities = 107/391 (27%), Positives = 182/391 (46%), Gaps = 33/391 (8%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
S+ I FGPQHP + L L L+ E V P IG +HRG EKL+E + + V
Sbjct: 2 SKRTIIPFGPQHPVLPEPIHLDLVLEDERVIEAIPSIGYVHRGLEKLVEKREYPDMVYIA 61
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
+R+ + Y+ A+E+++G+E+P R + +R ++SE R+ SHLL + A +G
Sbjct: 62 ERICGICSFIHSLTYSQAIEQVMGVEVPDRARYLRTIWSEYSRLHSHLLWLGLFADGMGF 121
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ + ++ RE ++ E +G R+ + GGV +D+ + ++++ + L
Sbjct: 122 ESLFMNAWKLREHILDDMEATTGGRVIQGVCKVGGVRKDVSNQKLKEMAKGLNGIKHELR 181
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
D++ + + + R N+G + + A+ G G + RGSG D+R Y Y EL F
Sbjct: 182 DLTKVFSHDDSVGHRLRNVGVLPQDQAYLLGAVGPVGRGSGLNIDMR-MLGYAAYDELSF 240
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
GDC R LVR E+ S+ +I Q V+++ V+ S
Sbjct: 241 KPVTESSGDCLGRCLVRANELFTSIDLIEQAVDKIPDGPVDVKVTGS------------- 287
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
P GE ++ E P+GE Y+ +G R ++R P + ++
Sbjct: 288 -------------------PDGEFFSRTEQPRGEVVHYVKGNGKKNLVRFRVRTPSFTNI 328
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + KG +LADV I+ S+D G +R
Sbjct: 329 PPLVEMLKGCELADVPIIVLSIDPCIGCAER 359
>gi|288803377|ref|ZP_06408810.1| NADH dehydrogenase I, D subunit [Prevotella melaninogenica D18]
gi|288334197|gb|EFC72639.1| NADH dehydrogenase I, D subunit [Prevotella melaninogenica D18]
Length = 524
Score = 326 bits (836), Expect = 4e-87, Method: Composition-based stats.
Identities = 133/391 (34%), Positives = 200/391 (51%), Gaps = 29/391 (7%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+F +N GPQHP+ HGVLRL LDGE V ++ PH+G +HRG EKL E T+ Q +
Sbjct: 163 DDNFVVNIGPQHPSTHGVLRLQTVLDGETVTKIYPHLGYIHRGIEKLCEQFTYPQTLALT 222
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DR++Y++ M HA +E+ +GIE+ R IR + E+ RI +HLL + A D+GA
Sbjct: 223 DRMNYLSAMMHRHALVGVIEEGMGIELSERILYIRTIMDELQRIDNHLLYTSCCAQDLGA 282
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
LT L+G +RE ++ E +G R+ Y+R GG+ DI P+ V ++ C +
Sbjct: 283 LTAFLYGMRDREHVLNVMEETTGGRLIQNYYRIGGLQADIDPDFVSNVKELCKYLRPMVQ 342
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ D+ N I +R N+G + +D +G +G R SG D+RK+ PY Y +++F
Sbjct: 343 EYLDVFGDNVITHERFRNVGVMDEQDCISYGVTGPAGRASGWKNDVRKNHPYAMYDKVNF 402
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ HGD DRY + E+ +S+ II Q ++ + G I+
Sbjct: 403 EQITLTHGDSMDRYYCHIQEIYQSLNIIEQLIDNI----PEGEFYIKQKPII-------- 450
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
VP G+ Y AVE GEFG YL S G YR K R G +
Sbjct: 451 -----------------KVPEGQWYFAVEGASGEFGAYLDSRGDKTAYRLKFRPMGLTLV 493
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AM+ + +G ++AD+ +LD V ++DR
Sbjct: 494 GAMDKMLRGQKIADLVTTGAALDFVIPDIDR 524
>gi|325857155|ref|ZP_08172445.1| hypothetical protein HMPREF9303_1451 [Prevotella denticola CRIS
18C-A]
gi|327313380|ref|YP_004328817.1| hypothetical protein HMPREF9137_1116 [Prevotella denticola F0289]
gi|325483218|gb|EGC86196.1| hypothetical protein HMPREF9303_1451 [Prevotella denticola CRIS
18C-A]
gi|326945241|gb|AEA21126.1| conserved hypothetical protein [Prevotella denticola F0289]
Length = 524
Score = 326 bits (835), Expect = 4e-87, Method: Composition-based stats.
Identities = 136/391 (34%), Positives = 198/391 (50%), Gaps = 29/391 (7%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+F +N GPQHP+ HGVLRL LDGE V R+ PH+G +HRG EKL E T+ Q +
Sbjct: 163 DDNFVVNIGPQHPSTHGVLRLQTVLDGETVTRIYPHLGYIHRGIEKLCEQFTYPQTLALT 222
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DR++Y++ M HA +E+ +GIE+ R + IR + E+ RI +HLL A D+GA
Sbjct: 223 DRMNYLSAMMHRHALVGVIEEGMGIELSDRIRYIRTIMDELQRIDNHLLYTACCAQDLGA 282
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
LT L+G +RE ++ E +G R+ Y+R GG+ DI P V ++ C +
Sbjct: 283 LTAFLYGMRDREHVLNVMEETTGGRLIQNYYRIGGLQADIDPNFVSNVKELCKYLRPMVQ 342
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ D+ N I QR NIG + D +G +G R SG D+RK+ PY Y ++DF
Sbjct: 343 EYLDVFGDNVITHQRFRNIGVMNETDCISYGVTGPAGRASGWKNDVRKNHPYAMYDKVDF 402
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ HGD DRY + E+ +S+ II Q ++ + G I+
Sbjct: 403 EQVTLTHGDSMDRYYCHIQEIYQSLNIIEQLIDNI----PEGEFYVKQKPII-------- 450
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
VP G+ Y +VE GEFG YL S G YR K R G +
Sbjct: 451 -----------------KVPEGQWYFSVEGASGEFGAYLDSRGDKTAYRLKFRPMGLTLV 493
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AM+ + +G ++AD+ +LD V ++DR
Sbjct: 494 GAMDKMLRGEKIADLVTTGAALDFVIPDIDR 524
>gi|315230911|ref|YP_004071347.1| Ni-Fe-hydrogenase III large subunit [Thermococcus barophilus MP]
gi|315183939|gb|ADT84124.1| Ni-Fe-hydrogenase III large subunit [Thermococcus barophilus MP]
Length = 537
Score = 326 bits (835), Expect = 5e-87, Method: Composition-based stats.
Identities = 110/389 (28%), Positives = 166/389 (42%), Gaps = 34/389 (8%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETK-TFLQAVPYFDR 67
+ GP HP H L + GE + +HRG EKL E + T Q +R
Sbjct: 159 MEVPVGPYHPTLHEPEVFELHVKGEEIVGAVYRGFHVHRGLEKLAEERMTINQIPFLAER 218
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ + AYA AVE IE+P R IR + E+ R+ SHLL +G +
Sbjct: 219 ICGICGYTHNCAYAQAVEDAAKIEVPERALYIRTILLELERLHSHLLWFGVAFHLLGFDS 278
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
+ + RE M E +G+R GGV +DI E + + + ++
Sbjct: 279 GFMHTWRIREAFMDLAELLTGNRKTYGMNLIGGVRRDIDEEKKKKVLEIFEKTKKETKEV 338
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
D G + R +G + ++ G G + R SG D+R+ PY Y +L+F +
Sbjct: 339 LDNAAGMKELISRMEGVGVLPKKEGREIGVVGPVARASGIDTDVRRDHPYAAYGDLEFKV 398
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
P+ K GD R+LVR E ES +I Q +++L + +
Sbjct: 399 PVYKEGDVLARFLVRYEETFESFWLIEQALDQLPQGDILN-------------------- 438
Query: 308 MESLIHHFKLYTEGYHVPV-GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
E Y +P A EAP+GE ++I++GGNK YR + RAP Y +L
Sbjct: 439 ------------EDYELPEYAVGIGATEAPRGEDVHFVITEGGNKVYRWRPRAPTYNNLP 486
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVD 395
A+ + G +LAD I+ S+D F D
Sbjct: 487 AVPIMLMGEKLADAPIIIASIDPCFSCTD 515
>gi|305664297|ref|YP_003860585.1| NADH-ubiquinone oxidoreductase chain 49kDa [Ignisphaera aggregans
DSM 17230]
gi|304378866|gb|ADM28705.1| NADH-ubiquinone oxidoreductase chain 49kDa [Ignisphaera aggregans
DSM 17230]
Length = 404
Score = 326 bits (835), Expect = 5e-87, Method: Composition-based stats.
Identities = 122/389 (31%), Positives = 177/389 (45%), Gaps = 28/389 (7%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
+ + GPQHPA H + L + DGE V VD G HRG EKL+E +F + R
Sbjct: 18 TLEVPIGPQHPALHEPVMLKVYADGEEVIHVDVITGYNHRGIEKLLEKNSFYKGKFIAPR 77
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ + M + Y AVE L I+ P R + +RVL +E+ RI SH+L A +G T
Sbjct: 78 ICGICNMVHDDCYTRAVEYLADIDPPPRAKYLRVLATELERIHSHMLINAVMAEIIGFDT 137
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
++ +RE +M E +G+R+H Y GGV +DI E I + L
Sbjct: 138 LFMYIMRDREMIMKAKEILTGNRIHGDYMIFGGVRRDIDDMKKERILDILNKVEPRLKYY 197
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
L + +R IG +K +DA G +R SG D+R Y +SE+ F++
Sbjct: 198 RKLFEEDVTISKRLTEIGVLKAKDAISHSIVGPPLRASGVKSDVRAEDKYNAFSEIPFEV 257
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
+ GD R L+R E S++I + + L P P++
Sbjct: 258 VVRPEGDSLARMLLRWDEALISLEICKYVLEHLP-SGNAVPDERKLPRVF---------- 306
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
P GE Y+ VEAP+GE Y++S GG+KPYR K+R P + ++
Sbjct: 307 -----------------PAGESYSRVEAPRGELTYYIVSRGGDKPYRVKVRTPSFNNIIN 349
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
F GH +ADV IL S D +DR
Sbjct: 350 STFSYIGHSIADVPVILVSYDPCISCMDR 378
>gi|220904934|ref|YP_002480246.1| NADH-ubiquinone oxidoreductase chain 49kDa [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
gi|219869233|gb|ACL49568.1| NADH-ubiquinone oxidoreductase chain 49kDa [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
Length = 360
Score = 325 bits (834), Expect = 6e-87, Method: Composition-based stats.
Identities = 108/390 (27%), Positives = 178/390 (45%), Gaps = 33/390 (8%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
R+ I FGPQHP L + ++ E V P +G +HRG E L+ TK + Q V +
Sbjct: 4 RTTVIPFGPQHPVLPEPLHIKFVVEDETVVGAIPQLGFVHRGLESLVRTKDYNQMVFVVE 63
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+ + + Y A+E ++GI P R Q +RV++SE+ RI SHLL + A G
Sbjct: 64 RICGICSCIHANCYCNALENMMGITAPPRAQFLRVIWSELHRIHSHLLWLGLFADAFGFE 123
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
+ + RE +M E +G+R+ + GGV +D+ P+ + + D + +
Sbjct: 124 SVFQQFWRIREHVMDICEATAGNRVILSVNVVGGVRRDLAPDQIRWMLGRLDELQKGMRE 183
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
++ + + ++R IG + +DA G +G +RGSG D R Y Y++L+F
Sbjct: 184 LTTTMLDDYTVQERTRGIGYLSKDDARLLGAAGPTLRGSGWEIDER-MHGYAAYNDLNFI 242
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ GDCY R VR E+ ++ +IR+ +NRL V +
Sbjct: 243 PVVEHDGDCYARAKVRFYEVLHAMDLIREALNRLPESELTVKVPGN-------------- 288
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
P GE VE P+GE Y+ ++G R ++R P +A++
Sbjct: 289 ------------------PDGEAVFRVEQPRGELFYYIRANGTKYLERMRVRTPTFANVP 330
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + G +L DV I+ S+D +R
Sbjct: 331 PLLHMLPGCKLPDVPVIVLSIDPCISCTER 360
>gi|317123767|ref|YP_004097879.1| NADH dehydrogenase subunit D [Intrasporangium calvum DSM 43043]
gi|315587855|gb|ADU47152.1| NADH dehydrogenase subunit D [Intrasporangium calvum DSM 43043]
Length = 396
Score = 325 bits (834), Expect = 6e-87, Method: Composition-based stats.
Identities = 129/395 (32%), Positives = 203/395 (51%), Gaps = 31/395 (7%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ +N GPQHPA HGVLRL + +DGE + +P IG +HRG EKL E + + Q V
Sbjct: 27 TADMVLNIGPQHPATHGVLRLRIVVDGERIVTAEPIIGYMHRGAEKLFEVRDYRQIVVLA 86
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
+R D+++ + E L VE++LG+E+P R +R +E+ R+LSHL+ + + +++GA
Sbjct: 87 NRHDWLSAFSNELGVVLGVEQMLGMEVPERAVWVRTALAELNRVLSHLMFLGSYPLELGA 146
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+TP + F ERE+L E SG RMH + R GG+ +D+P + + + L
Sbjct: 147 ITPVFYAFREREELQSVLEEISGGRMHYMFNRVGGLKEDLPAGWLGRVDKAIVNVRKRLP 206
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY----- 240
+ LL GN I + R +G + E A +G SG + R SG DLR+ PY Y
Sbjct: 207 SLEHLLVGNEILEARTKGVGVLPRETALAYGVSGPIARASGIDVDLRRDTPYLAYGELFG 266
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+ + GD R V + + R S+ I C++RL+ GP++ PK++
Sbjct: 267 PNGPGRVVTRESGDSLARLEVLLEQTRVSLDIAEACLDRLIQLQP-GPINVKLPKVL--- 322
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
VP GE+Y A E P G G +L+S G P+R K+R+
Sbjct: 323 ----------------------KVPEGEIYCATENPLGFNGYFLVSRGDKTPWRLKLRSA 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ ++ + + G ++D+ +ILGS+ V G+VD
Sbjct: 361 SFNNVAVLTEMLPGQLISDMVSILGSMFFVVGDVD 395
>gi|291452176|ref|ZP_06591566.1| NADH dehydrogenase subunit I D [Streptomyces albus J1074]
gi|291355125|gb|EFE82027.1| NADH dehydrogenase subunit I D [Streptomyces albus J1074]
Length = 380
Score = 325 bits (834), Expect = 7e-87, Method: Composition-based stats.
Identities = 132/394 (33%), Positives = 206/394 (52%), Gaps = 28/394 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+S +N GPQHP+ HGVLRL + LDGE V +P +G +HRG EKL E + + Q +
Sbjct: 12 AESTDMVLNIGPQHPSTHGVLRLRIVLDGEQVVSAEPVVGYMHRGAEKLFEARDYRQIIM 71
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+R D+++ + E L VE++LG+E+P R +R L +E+ R+L+HL+ + + +++
Sbjct: 72 LANRHDWLSAFSNELGVVLGVERMLGMEVPERAVWLRTLLAELNRVLNHLMFLGSYPLEL 131
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP F ERE+L E SG RMH + R GG+ +D+P E + +
Sbjct: 132 GGITPMFHAFTEREELQAVMEELSGGRMHYMFNRVGGLKEDLPAGWPERARAAVAAVRAR 191
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
++ L+ GN IF+ R IG + E +G SG + R SG +DLR+ +PY Y+EL
Sbjct: 192 MDVFDRLVLGNEIFRGRTRGIGVLSQEHVHAYGVSGPIARASGVDFDLRRDEPYLAYAEL 251
Query: 244 DF--DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ + GDC R+ + + S+ + C++R + GPV+ PK++
Sbjct: 252 ADVLKVVTREEGDCLARFECLLEQTYNSLDLADACLDR-YAELPPGPVNQRLPKVL---- 306
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
P G YA E P G G YL+S G PYR K+R+
Sbjct: 307 ---------------------KAPEGHTYAWTENPLGINGYYLVSKGEKTPYRLKLRSAS 345
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
Y ++QA+ L G ++D+ +ILGSL V G++D
Sbjct: 346 YNNIQALAVLLPGTLVSDMVSILGSLFFVVGDID 379
>gi|291297631|ref|YP_003508909.1| NADH dehydrogenase (quinone) [Stackebrandtia nassauensis DSM 44728]
gi|290566851|gb|ADD39816.1| NADH dehydrogenase (quinone) [Stackebrandtia nassauensis DSM 44728]
Length = 378
Score = 325 bits (834), Expect = 7e-87, Method: Composition-based stats.
Identities = 137/388 (35%), Positives = 207/388 (53%), Gaps = 27/388 (6%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
+N GPQHP+ HGVLRL L LDGE V +P +G +HRG EKL E + + Q + +R
Sbjct: 17 DMVLNIGPQHPSTHGVLRLKLTLDGERVTGCEPVVGYMHRGAEKLFEVRDYRQILMLANR 76
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
D+++ E ALAVE+L+GIE+P R +R +E+ R+L+HL+ + + +++GA+T
Sbjct: 77 HDWLSAFCSELGVALAVERLMGIEVPERAVWLRTALAELNRVLNHLMFLGSYPLEIGAIT 136
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
P + F ERE L +E ASG RMH + R GG+ +++P ++D+
Sbjct: 137 PMFYAFRERETLQAVFEEASGGRMHYMFNRIGGLKEEVPSGWTSRARQAIGEVRRGMSDV 196
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
D++ N IF R +G + E A +G SG + R SG +DLR+ +PY Y ELD +
Sbjct: 197 DDIIRTNEIFAARTKGVGVLSAETAAAYGVSGPVARASGLDFDLRRDEPYLAYGELDVPV 256
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
GDC+ R+ + ++ S+ + +C+NR+ GPV+ PK+V
Sbjct: 257 VTRTAGDCHARFGCLLDQVYVSLDLAEKCLNRVDAIG--GPVNVRLPKVV---------- 304
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
P G YA E P G G YL+S G P+R K+R YA++QA
Sbjct: 305 ---------------KAPEGATYAWTENPLGVNGYYLVSRGEKTPWRLKLRTASYANVQA 349
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ L G + D+ AILGS+ V G++D
Sbjct: 350 LSTLLVGCLVPDLVAILGSMFFVVGDID 377
>gi|239980311|ref|ZP_04702835.1| NADH dehydrogenase I chain D [Streptomyces albus J1074]
Length = 376
Score = 325 bits (833), Expect = 7e-87, Method: Composition-based stats.
Identities = 132/394 (33%), Positives = 206/394 (52%), Gaps = 28/394 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+S +N GPQHP+ HGVLRL + LDGE V +P +G +HRG EKL E + + Q +
Sbjct: 8 AESTDMVLNIGPQHPSTHGVLRLRIVLDGEQVVSAEPVVGYMHRGAEKLFEARDYRQIIM 67
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+R D+++ + E L VE++LG+E+P R +R L +E+ R+L+HL+ + + +++
Sbjct: 68 LANRHDWLSAFSNELGVVLGVERMLGMEVPERAVWLRTLLAELNRVLNHLMFLGSYPLEL 127
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP F ERE+L E SG RMH + R GG+ +D+P E + +
Sbjct: 128 GGITPMFHAFTEREELQAVMEELSGGRMHYMFNRVGGLKEDLPAGWPERARAAVAAVRAR 187
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
++ L+ GN IF+ R IG + E +G SG + R SG +DLR+ +PY Y+EL
Sbjct: 188 MDVFDRLVLGNEIFRGRTRGIGVLSQEHVHAYGVSGPIARASGVDFDLRRDEPYLAYAEL 247
Query: 244 DF--DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ + GDC R+ + + S+ + C++R + GPV+ PK++
Sbjct: 248 ADVLKVVTREEGDCLARFECLLEQTYNSLDLADACLDR-YAELPPGPVNQRLPKVL---- 302
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
P G YA E P G G YL+S G PYR K+R+
Sbjct: 303 ---------------------KAPEGHTYAWTENPLGINGYYLVSKGEKTPYRLKLRSAS 341
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
Y ++QA+ L G ++D+ +ILGSL V G++D
Sbjct: 342 YNNIQALAVLLPGTLVSDMVSILGSLFFVVGDID 375
>gi|253570157|ref|ZP_04847566.1| NADH-quinone oxidoreductase subunit C/D [Bacteroides sp. 1_1_6]
gi|298384972|ref|ZP_06994531.1| NADH dehydrogenase I, B/C/D subunit [Bacteroides sp. 1_1_14]
gi|218534461|sp|Q8A0F6|NUOD_BACTN RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|251840538|gb|EES68620.1| NADH-quinone oxidoreductase subunit C/D [Bacteroides sp. 1_1_6]
gi|298262116|gb|EFI04981.1| NADH dehydrogenase I, B/C/D subunit [Bacteroides sp. 1_1_14]
Length = 530
Score = 325 bits (833), Expect = 8e-87, Method: Composition-based stats.
Identities = 147/390 (37%), Positives = 214/390 (54%), Gaps = 29/390 (7%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+ +N GPQHPA HGV+R + L+GEI+ ++D + G +HRG EK+ E+ T+ Q + D
Sbjct: 170 EEYVVNIGPQHPATHGVMRFRVSLEGEIIRKIDANCGYIHRGIEKMNESLTYPQTLALTD 229
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDY+ HA + +EK +GIE+ R + IR + E+ RI SHLL + AMD+GAL
Sbjct: 230 RLDYLGAHQNRHALCMCIEKAMGIEVSDRVKYIRTIMDELQRIDSHLLFYSALAMDLGAL 289
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
T +GF +REK++ +E G R+ Y GGV D+ P V+ + + +++
Sbjct: 290 TAFFYGFRDREKILDIFEETCGGRLIMNYNTIGGVQADLHPNFVKRVKEFIPYMRGIIHE 349
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
D+ TGN I + R +G + EDA +G +G R SG A D+RK PY Y ++DF
Sbjct: 350 YHDIFTGNIIAQSRMKGVGVLSREDAISFGCTGGTGRASGWACDVRKRIPYGVYDKVDFQ 409
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ GDC+ RYLVRM E+ ES+KII Q ++ + GP I+
Sbjct: 410 EIVYTEGDCFARYLVRMDEIMESLKIIEQLIDNI----PEGPYQEKMKPII--------- 456
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
VP G YAAVE +GEFGV+L S G PYR RA G +
Sbjct: 457 ----------------RVPEGSYYAAVEGSRGEFGVFLESQGDKMPYRLHYRATGLPLVA 500
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A++ +C+G ++AD+ AI G+LD V ++DR
Sbjct: 501 AIDTICRGAKIADLIAIGGTLDYVVPDIDR 530
>gi|302345401|ref|YP_003813754.1| respiratory-chain NADH dehydrogenase, 49 Kd subunit [Prevotella
melaninogenica ATCC 25845]
gi|302149935|gb|ADK96197.1| respiratory-chain NADH dehydrogenase, 49 Kd subunit [Prevotella
melaninogenica ATCC 25845]
Length = 524
Score = 325 bits (833), Expect = 8e-87, Method: Composition-based stats.
Identities = 133/391 (34%), Positives = 199/391 (50%), Gaps = 29/391 (7%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+F +N GPQHP+ HGVLRL LDGE V ++ PH+G +HRG EKL E T+ Q +
Sbjct: 163 DDNFVVNIGPQHPSTHGVLRLQTVLDGETVTKIYPHLGYIHRGIEKLCEQFTYPQTLALT 222
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DR++Y++ M HA +E+ +GIE+ R IR + E+ RI +HLL + A D+GA
Sbjct: 223 DRMNYLSAMMHRHALVGVIEEGMGIELSERILYIRTIMDELQRIDNHLLYTSCCAQDLGA 282
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
LT L+G +RE ++ E +G R+ Y+R GG+ DI P V ++ C +
Sbjct: 283 LTAFLYGMRDREHVLNVMEETTGGRLIQNYYRIGGLQADIDPNFVSNVKELCKYLRPMVQ 342
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ D+ N I +R N+G + +D +G +G R SG D+RK+ PY Y +++F
Sbjct: 343 EYLDVFGDNVITHERFRNVGVMDEQDCISYGVTGPAGRASGWKNDVRKNHPYAMYDKVNF 402
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ HGD DRY + E+ +S+ II Q ++ + G I+
Sbjct: 403 EQITLTHGDSMDRYYCHIQEIYQSLNIIEQLIDNI----PEGEFYIKQKPII-------- 450
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
VP G+ Y AVE GEFG YL S G YR K R G +
Sbjct: 451 -----------------KVPEGQWYFAVEGASGEFGAYLDSRGDKTAYRLKFRPMGLTLV 493
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AM+ + +G ++AD+ +LD V ++DR
Sbjct: 494 GAMDKMLRGQKIADLVTTGAALDFVIPDIDR 524
>gi|309810897|ref|ZP_07704698.1| putative NADH-quinone oxidoreductase subunit 4 [Dermacoccus sp.
Ellin185]
gi|308435203|gb|EFP59034.1| putative NADH-quinone oxidoreductase subunit 4 [Dermacoccus sp.
Ellin185]
Length = 391
Score = 325 bits (833), Expect = 8e-87, Method: Composition-based stats.
Identities = 129/395 (32%), Positives = 200/395 (50%), Gaps = 31/395 (7%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ +N GPQHPA HGVLRL + LDGE + + +P +G +HRG EKL E + + Q +
Sbjct: 22 TSDMVLNIGPQHPATHGVLRLRITLDGERITKCEPIVGYMHRGAEKLFEVRDYRQILVLA 81
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
+R D+++ + E ALAVEK+LG+E+P R R L SE+ R+L+HL+ + + +++GA
Sbjct: 82 NRHDWLSAFSSEIGVALAVEKMLGMEVPERATWTRTLLSELNRVLNHLMFLGSYPLELGA 141
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+TP + F ERE+L E +G R+H + R GG+ DIP ++ S +
Sbjct: 142 ITPMFYVFREREELQGVMEEIAGGRLHYMFNRVGGLRDDIPAGWLDRAAAAVSLVRSRMP 201
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE--- 242
+I + GN I R +G V E +G +G + R SG DLR+ PY Y E
Sbjct: 202 EIESFIVGNPILNARTKGVGVVSREMVEQYGITGPIARASGVDVDLRRDDPYLAYGELFA 261
Query: 243 --LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+ GD R V + + S+ + C+ +L GPV+ PK++
Sbjct: 262 PGGPGRVITRSQGDSLARLEVLLDQTHVSLDLADACIE-VLRSLPPGPVNVKLPKVL--- 317
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
VP G+ Y A E P G G Y++S G P+R K+R+
Sbjct: 318 ----------------------KVPEGDGYVATENPLGFNGYYIVSRGEKTPWRLKLRSA 355
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ ++ + + +G LAD+ AILGS+ V G++D
Sbjct: 356 SFNNMACLGEVMRGQLLADMVAILGSMFFVVGDID 390
>gi|56414801|ref|YP_151876.1| formate hydrogenlyase subunit 5 [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197363729|ref|YP_002143366.1| formate hydrogenlyase subunit 5 [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|56129058|gb|AAV78564.1| formate hydrogenlyase subunit 5 [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197095206|emb|CAR60757.1| formate hydrogenlyase subunit 5 [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
Length = 569
Score = 324 bits (832), Expect = 1e-86, Method: Composition-based stats.
Identities = 101/393 (25%), Positives = 168/393 (42%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ E +
Sbjct: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKEDMIQTRQLAQQMRRD 355
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 356 VQELVDMLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ S+ +I ++ L G GP+ +P + A
Sbjct: 416 PMEVHSEQGCDVISRLKVRINEVYTSLNMIDFGLDNLPG----GPLMVEGFTYIPHRFAL 471
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 472 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 504
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 505 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537
>gi|162457346|ref|YP_001619713.1| NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56']
gi|218534373|sp|A9G9T3|NUOD2_SORC5 RecName: Full=NADH-quinone oxidoreductase subunit D 2; AltName:
Full=NADH dehydrogenase I subunit D 2; AltName:
Full=NDH-1 subunit D 2
gi|161167928|emb|CAN99233.1| NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56']
Length = 388
Score = 324 bits (832), Expect = 1e-86, Method: Composition-based stats.
Identities = 149/396 (37%), Positives = 214/396 (54%), Gaps = 32/396 (8%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
T+N GP HP+ HGVLR ++ DGEI+ + P +G LHR EK+ E T+ +PY
Sbjct: 20 DDEMTLNMGPHHPSTHGVLRFVISTDGEIIRKAVPDVGYLHRSIEKIGERCTYSGFMPYT 79
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DR+DY+A M A+A A EKL+GIE+P R Q +RV+ E+ RI SH++ + AMDVGA
Sbjct: 80 DRVDYIAAMFANEAWASACEKLMGIEVPKRAQYLRVISCELNRIGSHMIALGAMAMDVGA 139
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+TP W ERE + F E G+R+ Y R GGV D+P + + W D F +
Sbjct: 140 VTPFPWALREREYINDFIEELCGARLTFNYHRIGGVSFDMPKGWADKVKHWLDRFEPIMV 199
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ L++ N IF +R N+ V E+A WG G +RGSG WDLRK Y Y EL+F
Sbjct: 200 EFDRLISLNDIFIKRLANVAVVTAEEAKDWGLVGPNLRGSGVKWDLRKEDAYSVYPELEF 259
Query: 246 DIPIGK-----HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
D+P+G+ GDC+DR+ VR+ E RES KI+RQ ++++ +
Sbjct: 260 DVPVGRGRYGTVGDCWDRFYVRVEECRESAKILRQALDKIDEHPED-------------- 305
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ L K P GE YA +E+ +G+ G Y+I G + YR + R
Sbjct: 306 --------DILGKLPKKMR-----PDGEAYARIESARGDMGCYVIGRGAEEAYRARFRTG 352
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + +E G LAD+ A++ S D+V E+DR
Sbjct: 353 SFTAMAMIEAKSPGLFLADLVALIASFDVVAPEIDR 388
>gi|29349473|ref|NP_812976.1| NADH dehydrogenase I subunit D [Bacteroides thetaiotaomicron
VPI-5482]
gi|29341382|gb|AAO79170.1| NADH dehydrogenase I, chain D [Bacteroides thetaiotaomicron
VPI-5482]
Length = 538
Score = 324 bits (832), Expect = 1e-86, Method: Composition-based stats.
Identities = 147/390 (37%), Positives = 214/390 (54%), Gaps = 29/390 (7%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+ +N GPQHPA HGV+R + L+GEI+ ++D + G +HRG EK+ E+ T+ Q + D
Sbjct: 178 EEYVVNIGPQHPATHGVMRFRVSLEGEIIRKIDANCGYIHRGIEKMNESLTYPQTLALTD 237
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDY+ HA + +EK +GIE+ R + IR + E+ RI SHLL + AMD+GAL
Sbjct: 238 RLDYLGAHQNRHALCMCIEKAMGIEVSDRVKYIRTIMDELQRIDSHLLFYSALAMDLGAL 297
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
T +GF +REK++ +E G R+ Y GGV D+ P V+ + + +++
Sbjct: 298 TAFFYGFRDREKILDIFEETCGGRLIMNYNTIGGVQADLHPNFVKRVKEFIPYMRGIIHE 357
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
D+ TGN I + R +G + EDA +G +G R SG A D+RK PY Y ++DF
Sbjct: 358 YHDIFTGNIIAQSRMKGVGVLSREDAISFGCTGGTGRASGWACDVRKRIPYGVYDKVDFQ 417
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ GDC+ RYLVRM E+ ES+KII Q ++ + GP I+
Sbjct: 418 EIVYTEGDCFARYLVRMDEIMESLKIIEQLIDNI----PEGPYQEKMKPII--------- 464
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
VP G YAAVE +GEFGV+L S G PYR RA G +
Sbjct: 465 ----------------RVPEGSYYAAVEGSRGEFGVFLESQGDKMPYRLHYRATGLPLVA 508
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A++ +C+G ++AD+ AI G+LD V ++DR
Sbjct: 509 AIDTICRGAKIADLIAIGGTLDYVVPDIDR 538
>gi|326628901|gb|EGE35244.1| formate hydrogenlyase subunit 5 [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9]
Length = 561
Score = 324 bits (832), Expect = 1e-86, Method: Composition-based stats.
Identities = 101/393 (25%), Positives = 167/393 (42%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 168 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 227
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 228 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 287
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + F RE M E +G+R GG+ +D+ E +
Sbjct: 288 GFDPGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKEDMIQTRQLAQQMRRD 347
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 348 VQELVDMLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 407
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ S+ +I ++ L G GP+ +P + A
Sbjct: 408 PMEVHSEQGCDVISRLKVRINEVYTSLNMIDFGLDNLPG----GPLMVEGFTYIPHRFAL 463
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 464 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 496
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 497 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 529
>gi|16766155|ref|NP_461770.1| hydrogenase 3 large subunit [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|167550311|ref|ZP_02344068.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|167994153|ref|ZP_02575245.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168230910|ref|ZP_02655968.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|168235881|ref|ZP_02660939.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|168242579|ref|ZP_02667511.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|168820463|ref|ZP_02832463.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|194442683|ref|YP_002042091.1| formate hydrogenlyase subunit E [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194448570|ref|YP_002046810.1| formate hydrogenlyase subunit E [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194468909|ref|ZP_03074893.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194737308|ref|YP_002115802.1| formate hydrogenlyase subunit E [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197250744|ref|YP_002147747.1| formate hydrogenlyase subunit E [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197264014|ref|ZP_03164088.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|198245407|ref|YP_002216821.1| formate hydrogenlyase subunit E [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|200389022|ref|ZP_03215634.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204928176|ref|ZP_03219376.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|207858112|ref|YP_002244763.1| formate hydrogenlyase subunit 5 [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|224584626|ref|YP_002638424.1| formate hydrogenlyase subunit 5 [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|238909616|ref|ZP_04653453.1| formate hydrogenlyase subunit 5 [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|16421395|gb|AAL21729.1| hydrogenase 3, large subunit [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|194401346|gb|ACF61568.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194406874|gb|ACF67093.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194455273|gb|EDX44112.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194712810|gb|ACF92031.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197214447|gb|ACH51844.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197242269|gb|EDY24889.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197290814|gb|EDY30168.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|197939923|gb|ACH77256.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|199606120|gb|EDZ04665.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204322498|gb|EDZ07695.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205324728|gb|EDZ12567.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205327920|gb|EDZ14684.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205334554|gb|EDZ21318.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205338022|gb|EDZ24786.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|205342945|gb|EDZ29709.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|206709915|emb|CAR34269.1| formate hydrogenlyase subunit 5 [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|224469153|gb|ACN46983.1| formate hydrogenlyase subunit 5 [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|261247985|emb|CBG25818.1| formate hydrogenlyase subunit 5 [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267994972|gb|ACY89857.1| hydrogenase 3 large subunit [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301159409|emb|CBW18927.1| formate hydrogenlyase subunit 5 [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312913867|dbj|BAJ37841.1| formate hydrogenlyase subunit E [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|320087252|emb|CBY97017.1| hydrogenase 4 subunit [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
gi|321223402|gb|EFX48468.1| Formate hydrogenlyase subunit 5 [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|322614332|gb|EFY11263.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322621603|gb|EFY18456.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322624464|gb|EFY21297.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322628795|gb|EFY25578.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322633478|gb|EFY30220.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322635946|gb|EFY32654.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322639654|gb|EFY36339.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322646837|gb|EFY43340.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322650605|gb|EFY47010.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322654783|gb|EFY51102.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322659003|gb|EFY55256.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322664430|gb|EFY60624.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322668321|gb|EFY64478.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322673699|gb|EFY69800.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322677760|gb|EFY73823.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322681410|gb|EFY77442.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322683812|gb|EFY79822.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|323131200|gb|ADX18630.1| hydrogenase 3 large subunit [Salmonella enterica subsp. enterica
serovar Typhimurium str. 4/74]
gi|323193799|gb|EFZ79002.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323200269|gb|EFZ85351.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323203228|gb|EFZ88257.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323205525|gb|EFZ90490.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|323210813|gb|EFZ95686.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323216339|gb|EGA01066.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323221087|gb|EGA05518.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323226908|gb|EGA11090.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323230808|gb|EGA14926.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323234841|gb|EGA18927.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323238880|gb|EGA22930.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323241580|gb|EGA25611.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323248273|gb|EGA32209.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323251143|gb|EGA35016.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323256026|gb|EGA39764.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323263161|gb|EGA46699.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323264334|gb|EGA47840.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323271161|gb|EGA54589.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|326624580|gb|EGE30925.1| hydrogenase 3 large subunit [Salmonella enterica subsp. enterica
serovar Dublin str. 3246]
gi|332989721|gb|AEF08704.1| hydrogenase 3 large subunit [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
Length = 569
Score = 324 bits (832), Expect = 1e-86, Method: Composition-based stats.
Identities = 101/393 (25%), Positives = 168/393 (42%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ E +
Sbjct: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKEDMIQTRQLAQQMRRD 355
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 356 VQELVDMLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ S+ +I ++ L G GP+ +P + A
Sbjct: 416 PMEVHSEQGCDVISRLKVRINEVYTSLNMIDFGLDNLPG----GPLMVEGFTYIPHRFAL 471
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 472 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 504
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 505 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537
>gi|239616969|ref|YP_002940291.1| NADH-ubiquinone oxidoreductase chain 49kDa [Kosmotoga olearia TBF
19.5.1]
gi|239505800|gb|ACR79287.1| NADH-ubiquinone oxidoreductase chain 49kDa [Kosmotoga olearia TBF
19.5.1]
Length = 402
Score = 324 bits (832), Expect = 1e-86, Method: Composition-based stats.
Identities = 118/391 (30%), Positives = 189/391 (48%), Gaps = 30/391 (7%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
S+ F + GP HP ++LDGE V ++ G +HRG EK+ E TF Q++
Sbjct: 2 SKEFNLPVGPFHPLLEEAEYFKIKLDGERVVDIEMETGWMHRGIEKISEESTFDQSIFVV 61
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
+R+ + + A A E + IE+P++ + IR L E+ R+ SHLL + +G
Sbjct: 62 ERICGICSASHPFACINAFEDIGEIEVPLKARYIRSLIGELERVHSHLLWLGLAGHFIGY 121
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
T +W ++ RE ++ E +G+R H F+ GGV +D L + D L
Sbjct: 122 DTLWMWAWKYREPVLEVIEMITGNRNHYGTFKIGGVRRDYDVSLNSVVHEKLDFLEKKLT 181
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
++ + + + + R +G + E+A + G R SG A D+RK +PY Y LDF
Sbjct: 182 MVAKAVANDPVVRSRLCGVGVLTKEEAISYCAVGPTARASGVAIDVRKDEPYAAYDLLDF 241
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ + + GD + + +VR++E+ ES+K+IRQ + +L K+ P D+K
Sbjct: 242 GVVVREEGDIFAKTVVRILEVFESIKMIRQIIEKL-------------RKVKGPIYNDVK 288
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
+P GE EAP+GE Y+ +DG N+P R KIRAP Y ++
Sbjct: 289 E-----------------IPAGEGIGRHEAPRGEVFHYIRTDGSNRPVRHKIRAPSYVNI 331
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ C G LADV L S+D + +R
Sbjct: 332 PTYKASCIGENLADVLITLASVDPCYCCTER 362
>gi|257051790|ref|YP_003129623.1| NADH-ubiquinone oxidoreductase chain 49kDa [Halorhabdus utahensis
DSM 12940]
gi|256690553|gb|ACV10890.1| NADH-ubiquinone oxidoreductase chain 49kDa [Halorhabdus utahensis
DSM 12940]
Length = 559
Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats.
Identities = 151/401 (37%), Positives = 219/401 (54%), Gaps = 32/401 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFL-QAV 62
+ + +N GP HPA HGVL + LDGE + +DP IG LHR E++ + T+ Q +
Sbjct: 183 QDPDTMFVNIGPHHPATHGVLHVKTVLDGEQIVDLDPDIGYLHRSEEQMCQQGTYRHQIM 242
Query: 63 PYFDRLDY-VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
PY DR DY + E AYA A E L I++P Q++R + +E+ RI +H+L V T +
Sbjct: 243 PYPDRWDYTPGGLLNEWAYARAAEDLADIDVPEYAQVLRTMSAELTRIAAHMLAVGTFGL 302
Query: 122 DVG--ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP---ELVEDIGCW 176
D+ ++ +RE + E +G R+ YFR GGV D+P E +E + +
Sbjct: 303 DLYGDFTVIFMYAVRDREVVQNLLEDLTGQRLMFNYFRLGGVAWDLPEPRQEYLEKVREF 362
Query: 177 CDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQP 236
D P L + DL+TGN IF+ R ++ G + E A +G +G + RGSG +DLR+ P
Sbjct: 363 TDELPERLEEYHDLITGNEIFQMRCIDTGVLPPEVAKSYGATGPVARGSGVDYDLRRDDP 422
Query: 237 YECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKV-GPVSASDPK 295
Y Y ELD+D+ D Y R LVR+ E+ ES KIIRQC++ L + + ++ P+
Sbjct: 423 YGYYDELDWDVVTEDGMDNYARVLVRLQEVEESAKIIRQCLDLLEDWPEDDRTIQSNVPR 482
Query: 296 IVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRC 355
+ P P EVY AVE KGE G+Y+ SDG +KP R
Sbjct: 483 TLRPD------------------------PDKEVYRAVEGAKGELGIYIRSDGTDKPARF 518
Query: 356 KIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
KIR+P +++LQ + + +G + D+ A LGSLDIV GEVDR
Sbjct: 519 KIRSPCFSNLQTLPVMSEGEYIPDMVASLGSLDIVLGEVDR 559
>gi|145596795|ref|YP_001161092.1| NADH dehydrogenase (quinone) [Salinispora tropica CNB-440]
gi|218534371|sp|A4XCQ7|NUOD2_SALTO RecName: Full=NADH-quinone oxidoreductase subunit D 2; AltName:
Full=NADH dehydrogenase I subunit D 2; AltName:
Full=NDH-1 subunit D 2
gi|145306132|gb|ABP56714.1| NADH dehydrogenase (quinone) [Salinispora tropica CNB-440]
Length = 388
Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats.
Identities = 133/393 (33%), Positives = 207/393 (52%), Gaps = 27/393 (6%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++ +N GPQHP+ HGVLRL L LDGE V +P +G +HRG EKL E + + Q +
Sbjct: 22 EQLGTDMVLNIGPQHPSTHGVLRLRLVLDGERVVSAEPVVGYMHRGAEKLFEVRDYRQII 81
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
+R D+++ E LAVE+LLG+E+P R +R+ +E+ R+L+HL+ + + ++
Sbjct: 82 VLANRHDWLSAFANELGVVLAVERLLGMEVPERATWLRMALAELNRVLNHLMFLGSYPLE 141
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA+TP + F ERE L E SG R+H + R GG+ +++P
Sbjct: 142 IGAITPMFYAFRERETLQTALEEVSGGRIHYMFNRVGGLKEEVPAGWTGRARAAIGEVRR 201
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+L D+ +L+ N IF R V +G + A +G SG + R SG DLR+ +PY Y +
Sbjct: 202 SLPDLDNLIRRNEIFLARTVGVGVLSAAQAAAYGASGPVARASGLDLDLRRDEPYLAYDQ 261
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LD + GDC+ R+ V + ++ S+ + QC++R+ GP++ PK++
Sbjct: 262 LDVPVVTRTAGDCHSRFEVLLDQVYVSLDLAEQCLDRVDRLT--GPINTRLPKVL----- 314
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
P G YA E P G G YL+S G P+R K+R Y
Sbjct: 315 --------------------KAPEGHTYAWTENPLGINGYYLVSRGEKTPWRLKLRTASY 354
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
A++QA+ L G + D+ AILGS+ V G++D
Sbjct: 355 ANVQALATLLPGCLVPDLVAILGSMFFVVGDID 387
>gi|48478475|ref|YP_024181.1| NADH dehydrogenase subunit D [Picrophilus torridus DSM 9790]
gi|48431123|gb|AAT43988.1| NADH-quinone oxidoreductase chain D [Picrophilus torridus DSM 9790]
Length = 367
Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats.
Identities = 148/388 (38%), Positives = 224/388 (57%), Gaps = 25/388 (6%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
+NFGP HP+AHG+ R + LDGEIV+ VD IG LHR EK+ E + A+ YFDR+
Sbjct: 5 VEVNFGPVHPSAHGIYRFKVLLDGEIVKDVDIQIGYLHRNAEKICELNPYPDAIIYFDRM 64
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
DY+ MN E Y AVEKL GIE P R IR++ +E+ R+ S L+ + +D G LTP
Sbjct: 65 DYLDAMNMELGYLTAVEKLTGIEPPERAIWIRMIMAELSRLASRLVGLGALGLDFGMLTP 124
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
F EREK+ + ASG R Y GGV+QD+ ++++DI + + F L DI
Sbjct: 125 FFHCFIEREKIQKIFVEASGGRQEVNYMSIGGVYQDLTDKIIDDIKTFIEQFKKRLEDIY 184
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
+ + IF +RN NIG ++ E A +G +G ++R +G +D+R+ +PY Y +++FD+P
Sbjct: 185 NQFIHSEIFYERNNNIGILERETALDYGVTGPLLRSTGVPYDIRRVEPYLFYDKVNFDVP 244
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
I D R+++R+ EMR+S++II QC++++ GP K R
Sbjct: 245 ISNKKDNLARFVLRVEEMRQSIRIIEQCLSKIPA----GPYFNPKAKKSLMLRVTG---- 296
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
GE Y+ +E+ KGEFGVY++ +G KPYR +R+P + +L +
Sbjct: 297 -----------------NGEAYSRIESDKGEFGVYIVGNGTTKPYRVHVRSPAFKNLSVL 339
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVDR 396
L +G+ +AD+ +I+G++D V GEVDR
Sbjct: 340 PELARGYMIADLISIIGTIDAVTGEVDR 367
>gi|161615752|ref|YP_001589717.1| hypothetical protein SPAB_03543 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|161365116|gb|ABX68884.1| hypothetical protein SPAB_03543 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 569
Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats.
Identities = 101/393 (25%), Positives = 168/393 (42%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ E +
Sbjct: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKEDMIQTRQLAQQMRRD 355
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 356 VQELVDMLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ S+ +I ++ L G GP+ +P + A
Sbjct: 416 PMEVHSEQGCDVISRLKVRINEVYTSLNMIDFGLDNLPG----GPLMVEGFTYIPHRFAL 471
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 472 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 504
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 505 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537
>gi|62181352|ref|YP_217769.1| formate hydrogenlyase subunit 5 [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|62128985|gb|AAX66688.1| Formate hydrogenlyase subunit 5 precursor [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|322715835|gb|EFZ07406.1| formate hydrogenlyase subunit 5 precursor [Salmonella enterica
subsp. enterica serovar Choleraesuis str. A50]
Length = 569
Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats.
Identities = 101/393 (25%), Positives = 168/393 (42%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ E +
Sbjct: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKEDMIQTRQLAQQMRRD 355
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 356 VQELVDMLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVSYGLL 415
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ S+ +I ++ L G GP+ +P + A
Sbjct: 416 PMEVHSEQGCDVISRLKVRINEVYTSLNMIDFGLDNLPG----GPLMVEGFTYIPHRFAL 471
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 472 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 504
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 505 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537
>gi|205353793|ref|YP_002227594.1| formate hydrogenlyase subunit 5 [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205273574|emb|CAR38561.1| formate hydrogenlyase subunit 5 [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
Length = 561
Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats.
Identities = 100/393 (25%), Positives = 167/393 (42%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 168 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 227
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+R+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 228 LSERVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 287
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + F RE M E +G+R GG+ +D+ E +
Sbjct: 288 GFDPGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKEDMIQTRQLAQQMRRD 347
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 348 VQELVDMLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 407
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ S+ +I ++ L G GP+ +P + A
Sbjct: 408 PMEVHSEQGCDVISRLKVRINEVYTSLNMIDFGLDNLPG----GPLMVEGFTYIPHRFAL 463
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 464 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 496
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 497 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 529
>gi|55378231|ref|YP_136081.1| NADH dehydrogenase/oxidoreductase [Haloarcula marismortui ATCC
43049]
gi|55230956|gb|AAV46375.1| NADH dehydrogenase/oxidoreductase [Haloarcula marismortui ATCC
43049]
Length = 560
Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats.
Identities = 148/402 (36%), Positives = 215/402 (53%), Gaps = 32/402 (7%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFL-QA 61
+ + +N GP HPA HGVL + LDGE + ++P IG LHR E++ + T+ Q
Sbjct: 183 EDDPDTMFVNIGPHHPATHGVLHVETVLDGEQIADLEPDIGYLHRCEEQMCQQGTYRHQI 242
Query: 62 VPYFDRLDYVA-PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY DR DY++ + E AYA A E L I++P Q+IR + +E+ RI SH L + T A
Sbjct: 243 MPYPDRWDYISAGILNEWAYARAAEDLADIDVPEYAQVIRTMSAEMCRIASHELALATFA 302
Query: 121 MDVG--ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP---ELVEDIGC 175
+DV +G +RE + E +G R+ Y R GGV D+P E E I
Sbjct: 303 LDVFGDFTAVFQYGIRDREIVQNLLEDLTGQRLMFNYLRLGGVAWDLPEPREEYFEKIRD 362
Query: 176 WCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQ 235
+ D P L +I DL+TGN IF+ R V+ G + + +G +G + RGSG +D+R+
Sbjct: 363 FLDDLPHKLEEIHDLVTGNEIFQMRCVDTGVLSPDQVKQYGATGPVARGSGVDYDIRRDD 422
Query: 236 PYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPK 295
PY Y ELD+++ + GD + R LVR+ E+ ES +II QCV+ L
Sbjct: 423 PYGYYDELDWNVVTEQGGDNFSRVLVRLREVEESARIIEQCVDLL--------------- 467
Query: 296 IVPPKRADMKRSMESLIHHFKLYTEGYHV-PVGEVYAAVEAPKGEFGVYLISDGGNKPYR 354
++ E P E+Y +VE KGE G+Y+ SDG +KP R
Sbjct: 468 ---------EQWPEDDREIQANVPRTLRPDPDKEIYRSVEGAKGELGIYIRSDGTDKPAR 518
Query: 355 CKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
KIR+P +++LQ + + +G + D+ A LGSLDIV GEVDR
Sbjct: 519 FKIRSPCFSNLQTLPEMSQGEYIPDMIASLGSLDIVLGEVDR 560
>gi|242238723|ref|YP_002986904.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Dickeya dadantii
Ech703]
gi|242130780|gb|ACS85082.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Dickeya dadantii
Ech703]
Length = 575
Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats.
Identities = 105/397 (26%), Positives = 169/397 (42%), Gaps = 32/397 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ + + GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 178 VNEATGDTRVVPIGPMHITSDEPGHFRLFVDGEQIIDADYRLFYVHRGMEKLAETRMGYN 237
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY ++E LG+ +P R IR + E+ R+ SHLLN+
Sbjct: 238 EVTFLSDRVCGICGFTHSVAYTSSIENALGVVVPARAHTIRSILLEVERLHSHLLNIGLS 297
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
+ VG T + F REK M E +G+R GG+ +DI E
Sbjct: 298 SHFVGFDTGFMQFFRVREKSMQIAEMLTGARKTYGLNLIGGIRRDILKEDRLKTIKLIRE 357
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++D+L QR IG + + A + G MIR SG D+R P+
Sbjct: 358 MREEVTQLTDMLLNTANMAQRTQGIGVLNRQVARDYSPVGPMIRASGFNRDVRVDHPFAG 417
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y +L ++ GD Y R LVR+ E+ S+ +I ++ + G GP+ P
Sbjct: 418 YLDLPMELHHLDGGDVYSRVLVRVREVFTSLAMIEFGLDNMPG----GPILNEHIHYRPH 473
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
K A EAP+GE + ++ K +R + RA
Sbjct: 474 KFAL---------------------------GFTEAPRGEDIHWSMTGDNQKLFRWRCRA 506
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YA+ + F+ +G+ ++D I+GSLD + DR
Sbjct: 507 ATYANWPVLRFMLRGNTVSDAPLIIGSLDPCYSCTDR 543
>gi|16761626|ref|NP_457243.1| formate hydrogenlyase subunit 5 [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29143110|ref|NP_806452.1| formate hydrogenlyase subunit 5 [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|213052197|ref|ZP_03345075.1| formate hydrogenlyase subunit 5 [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
gi|213426142|ref|ZP_03358892.1| formate hydrogenlyase subunit 5 [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|289823875|ref|ZP_06543481.1| formate hydrogenlyase subunit 5 [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
gi|25285223|pir||AE0846 formate hydrogenlyase chain 5 [imported] - Salmonella enterica
subsp. enterica serovar Typhi (strain CT18)
gi|16503927|emb|CAD05956.1| formate hydrogenlyase subunit 5 [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29138743|gb|AAO70312.1| formate hydrogenlyase subunit 5 [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
Length = 569
Score = 324 bits (831), Expect = 2e-86, Method: Composition-based stats.
Identities = 101/393 (25%), Positives = 168/393 (42%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ E +
Sbjct: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKEDMIQTRQLAQQMRRD 355
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 356 VQELVDMLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ S+ +I ++ L G GP+ +P + A
Sbjct: 416 PMEVHSEQGCDVISRLKVRINEVYTSLNMIDFGLDNLPG----GPLMVEGFTYIPHRFAL 471
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 472 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 504
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 505 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537
>gi|116754358|ref|YP_843476.1| NADH dehydrogenase (ubiquinone) [Methanosaeta thermophila PT]
gi|116665809|gb|ABK14836.1| F420H2 dehydrogenase subunit C [Methanosaeta thermophila PT]
Length = 390
Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats.
Identities = 139/395 (35%), Positives = 200/395 (50%), Gaps = 31/395 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K ++ GPQH G L L ++GE V++ +G +H+G EK++E +T+LQ +
Sbjct: 25 KSDSEMIMHMGPQHAIVPGPFLLDLLIEGERVKKAFLDVGYIHKGIEKIMENRTYLQGIV 84
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+ Y+A + AY AVEKLLGI P R Q IRV+ +E+ RI SHLL +
Sbjct: 85 YTDRMCYLASITNNEAYCGAVEKLLGITPPERAQYIRVILAELSRIQSHLLGTGEFLTLL 144
Query: 124 GALT--PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
GA T P + +RE ++ E +G+R+ + R GGV D+P +
Sbjct: 145 GAATYSPFQYMIIDREDIVYLMESITGARITHTFVRFGGVRNDLPDGFADKARPILKRMR 204
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+ DLL + I+ +R IG + DA G SG +R S +D+R+ P Y
Sbjct: 205 ERTEEYMDLLHSDPIYTRRMRGIGVLSPGDARRLGVSGPPLRASDTPYDMRREDPILVYP 264
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+LDF + K GD R VR+ E+ ES+ II QC++++ GP+ PK +
Sbjct: 265 DLDFKVVTRKAGDAEARVEVRLEEILESIHIIEQCLDQIPD----GPIQEKLPKKI---- 316
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
GE Y VE P+GE G Y++SDG KPYR K+R P
Sbjct: 317 ---------------------KPEPGEAYYRVEDPRGEMGFYVVSDGSEKPYRVKVRGPV 355
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YA++QA+ L +G +ADV AI GS+D EVDR
Sbjct: 356 YAYMQALPPLLEGAYVADVVAIAGSMDACTSEVDR 390
>gi|307130313|ref|YP_003882329.1| hydrogenase 4, subunit [Dickeya dadantii 3937]
gi|306527842|gb|ADM97772.1| hydrogenase 4, subunit [Dickeya dadantii 3937]
Length = 575
Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats.
Identities = 103/397 (25%), Positives = 168/397 (42%), Gaps = 32/397 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ + + GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 178 INEATGDTRVVPIGPLHITSDEPGHFRLFVDGEQIIDADYRLFYVHRGMEKLAETRMGYN 237
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY ++E LG+ +P R IR + E+ R+ SHLLN+
Sbjct: 238 EVTFLSDRVCGICGFTHSVAYTSSIENALGVVVPARAHTIRSILLEVERLHSHLLNIGLS 297
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
+ VG T + F REK M E +G+R GG+ +DI E
Sbjct: 298 SHFVGFDTGFMQFFRVREKSMQIAEMLTGARKTYGLNLIGGIRRDILKEDRLKTIKLIRE 357
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++D+L QR +G + + A + G MIR SG D+R P+
Sbjct: 358 MRDEVTQLTDMLLNTANMAQRTQGVGVLNRQVARDYSPVGPMIRASGFQRDVRVDHPFAG 417
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y +L ++ GD Y R LVR+ E+ S+ +I ++ + GP+ P
Sbjct: 418 YLDLPMELHHLDGGDVYSRVLVRVREVFTSLAMIEFGLDNMPD----GPILNEHIHYQPH 473
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
K A EAP+GE + ++ K +R + RA
Sbjct: 474 KFAL---------------------------GFTEAPRGEDIHWSMTGDNQKLFRWRCRA 506
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YA+ + F+ +G+ ++D I+GSLD + DR
Sbjct: 507 ATYANWPVLRFMLRGNTVSDAPLIIGSLDPCYSCTDR 543
>gi|168262037|ref|ZP_02684010.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|168464025|ref|ZP_02697942.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|195633193|gb|EDX51607.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|205349181|gb|EDZ35812.1| formate hydrogenlyase, subunit E [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
Length = 569
Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats.
Identities = 101/393 (25%), Positives = 168/393 (42%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ E +
Sbjct: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKEDMIQTRQLAQQMRRD 355
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 356 VQELVDMLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ S+ +I ++ L G GP+ +P + A
Sbjct: 416 PMEVHSEQGCDVISRLKVRINEVYTSLNMIDFGLDNLPG----GPLMVEGFTYIPHRFAL 471
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 472 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 504
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 505 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537
>gi|161502106|ref|YP_001569218.1| hypothetical protein SARI_00123 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160863453|gb|ABX20076.1| hypothetical protein SARI_00123 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 569
Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats.
Identities = 101/393 (25%), Positives = 168/393 (42%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ E +
Sbjct: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKEDMIQTRQLAQQMRRD 355
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 356 VQELVDMLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ S+ +I ++ L G GP+ +P + A
Sbjct: 416 PMEVHSEQGCDVISRLKVRINEVYTSLNMIDFGLDNLPG----GPLMVEGFTYIPHRFAL 471
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 472 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 504
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 505 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537
>gi|229050968|ref|ZP_04194518.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus AH676]
gi|228722426|gb|EEL73821.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus AH676]
Length = 346
Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats.
Identities = 146/372 (39%), Positives = 208/372 (55%), Gaps = 28/372 (7%)
Query: 24 LRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALA 83
RL++++DGEI++ P IG LHRGTEK+ E+ + Q +PY DR+DY++ M + A
Sbjct: 2 FRLVIKIDGEIIKEATPVIGYLHRGTEKIAESLQYTQIIPYTDRMDYLSAMTNNYVICHA 61
Query: 84 VEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFY 143
VE ++G+EIP R + +RVL E+GRI SHL+ T +D+GA++P L+ F ERE ++
Sbjct: 62 VETMMGLEIPERAEYLRVLAMELGRIASHLVWWGTNLLDIGAVSPFLYAFREREMIINLL 121
Query: 144 ERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVN 203
G+R+ Y R GGV D P +E + + L DL++GN IF R
Sbjct: 122 NELCGARLTFNYMRVGGVKWDAPDGWIEKVEEFVPYMREQLAGYHDLVSGNEIFLNRVKG 181
Query: 204 IGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRM 263
+G E+A + SG +R +G WDLRK +PY Y DFDIP+G GD +DRY+ RM
Sbjct: 182 VGIYSAEEAISYSLSGANLRCTGVNWDLRKDEPYSIYDRFDFDIPVGSVGDAWDRYVCRM 241
Query: 264 MEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYH 323
E+ ES+KI+ Q V + K G V A PKI+
Sbjct: 242 QEIEESLKIVEQAVQQFP---KDGAVLAKVPKII-------------------------K 273
Query: 324 VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAI 383
P GE + +E+P+GE G Y+ SDG +PYR K R P + +LQ + L K +A++ I
Sbjct: 274 APKGEAFVRIESPRGEIGCYIASDGKKEPYRLKFRRPSFYNLQILPKLLKDENIANLITI 333
Query: 384 LGSLDIVFGEVD 395
LG +DIV GEVD
Sbjct: 334 LGGVDIVLGEVD 345
>gi|284006927|emb|CBA72198.1| hydrogenase-4 component G [Arsenophonus nasoniae]
Length = 569
Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats.
Identities = 98/392 (25%), Positives = 169/392 (43%), Gaps = 34/392 (8%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVPYF 65
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 178 KNNVLPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLS 237
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DR+ + AYA ++E +GI +P R Q+IR + EI R+ SHLLN+ VG
Sbjct: 238 DRVCGICGFAHSTAYATSIENAMGIVVPERAQMIRAILLEIERLHSHLLNLGLACHFVGF 297
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ + F RE M E +G+R GG+ +D+ + ++ +
Sbjct: 298 DSGFMQFFRVRESSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMKKNRQLAQQMRREVQ 357
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
++ ++L +QR V IG + + A + G M+R SG A R+ P+ Y L
Sbjct: 358 ELVEILLTTPNIEQRTVGIGRLDPQVARDFSNVGPMVRASGHARYTRRDHPFIGYGLLPL 417
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
++ + D R VR+ E+ S+ +I ++ L G
Sbjct: 418 EVHSEQECDVLARLKVRINEVFTSLNMIDFGLDNLPGGA--------------------- 456
Query: 306 RSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
L EG+ +P EAP+G+ + ++ K +R + RA YA+
Sbjct: 457 -----------LMVEGFTYIPHRFALGFTEAPRGDDIHWSMTGDNQKLWRWRCRAATYAN 505
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ ++ +G+ ++D I+GSLD + DR
Sbjct: 506 WPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537
>gi|170765867|ref|ZP_02900678.1| formate hydrogenlyase, subunit E [Escherichia albertii TW07627]
gi|170125013|gb|EDS93944.1| formate hydrogenlyase, subunit E [Escherichia albertii TW07627]
Length = 576
Score = 323 bits (829), Expect = 3e-86, Method: Composition-based stats.
Identities = 100/394 (25%), Positives = 168/394 (42%), Gaps = 34/394 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H A+ L +DGE + D + +HRG EKL ET+ + +
Sbjct: 183 DKKNNVVPIGPLHVASDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 242
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 243 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 302
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ + +
Sbjct: 303 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 362
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 363 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 422
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ ++ +I ++ L G
Sbjct: 423 PMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGP------------------- 463
Query: 304 MKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
L EG+ +P EAP+G+ + ++ K YR + RA Y
Sbjct: 464 -------------LMVEGFTYIPHSFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATY 510
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 511 ANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 544
>gi|333001064|gb|EGK20634.1| formate hydrogenlyase subunit 5 [Shigella flexneri K-272]
gi|333015431|gb|EGK34770.1| formate hydrogenlyase subunit 5 [Shigella flexneri K-227]
Length = 569
Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats.
Identities = 97/393 (24%), Positives = 166/393 (42%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ + +
Sbjct: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 355
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 356 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGLARDTRADHPFVGYGLL 415
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ ++ + ++ L GP+ +P + A
Sbjct: 416 PMEVHSEQGCDVISRLKVRINEVYTALNM----IDYGLDNLPGGPLMVEGFTYIPHRFAL 471
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 472 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 504
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 505 NWPPLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537
>gi|212550776|ref|YP_002309093.1| NADH dehydrogenase I subunit CD [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
gi|212549014|dbj|BAG83682.1| NADH dehydrogenase I subunit CD [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
Length = 533
Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats.
Identities = 137/392 (34%), Positives = 204/392 (52%), Gaps = 29/392 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ + +NFGPQHP+ HGVL L + LDGEI+++VDP+ G +HRG EK+ ET T+ Q +
Sbjct: 171 EKDDYVVNFGPQHPSTHGVLHLRVALDGEIIKKVDPNFGYIHRGIEKMCETYTYSQILHL 230
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
+RLDY++ H LA+EK L +EIP R IR + E+ RI SHLL AMD+G
Sbjct: 231 TERLDYLSGTINRHGMCLAIEKGLELEIPRRAHYIRTIIDELTRIASHLLGWGCMAMDMG 290
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
++T ++G +REK+M +E G R+ A Y GGV DI P + + L
Sbjct: 291 SITAFVYGMRDREKIMDIFEETCGGRLMANYSVIGGVMNDIHPNFQRKVKEFILYMRKRL 350
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ L T N I + R +G + E A G +G R SG + D+RK +PY Y ++
Sbjct: 351 KEHHLLFTDNPIARGRMEGVGFLSKEQAISLGATGPTGRASGWSNDIRKIEPYAAYKYVE 410
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F+ + G +DRY++R+ E+ ES+KII Q ++ + G + A
Sbjct: 411 FNEILRTDGLTFDRYIIRLDEIEESLKIIEQLIDNIPGGAFSTKIKAM------------ 458
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
+P GE Y VE+ +GEF V++ S G PYR K R+P
Sbjct: 459 -----------------IRLPEGEFYQRVESARGEFDVFIYSKGDKYPYRVKFRSPCMTL 501
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + + G ++AD+ + GSLD V +DR
Sbjct: 502 VNTLGVIAIGVKIADLVMLGGSLDYVVPCIDR 533
>gi|50120180|ref|YP_049347.1| hydrogenase-4 component G [Pectobacterium atrosepticum SCRI1043]
gi|49610706|emb|CAG74151.1| hydrogenase-4 component G [Pectobacterium atrosepticum SCRI1043]
Length = 578
Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats.
Identities = 106/396 (26%), Positives = 168/396 (42%), Gaps = 32/396 (8%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQ 60
++ S + + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 182 NEGGSEARIVPVGPLHITSDEPGHFRLFVDGERIVDADYRLFYVHRGMEKLAETRMGYNE 241
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
DR+ + AY +VE LGI +P R IR + E+ R+ SHLLN+ +
Sbjct: 242 VTFLSDRVCGICGFAHSVAYTSSVENALGIYVPPRAHAIRSILLEVERLHSHLLNIGLSS 301
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+G T + F REK M E +G+R GG+ +DI E +
Sbjct: 302 HFIGFDTGFMQFFRVREKSMALAELLTGARKTYGLNLIGGIRRDILKEQRQKGIKLVQEM 361
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ + + D+L +QR IG + + A + G MIRGSG A D+R Y Y
Sbjct: 362 RAEVTQLVDMLLNTPNMEQRTQGIGLLDRKIARDYSPVGPMIRGSGFARDMRFDHDYAGY 421
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
S L + D + R +VR+ E ES+ ++ ++ L GP+ P K
Sbjct: 422 SALPKTLFTLDGCDVFSRVMVRVQETLESLSMVEFGLDHL----PEGPLLTEGFTYRPYK 477
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
A EAP+GE + + K +R + RA
Sbjct: 478 FAL---------------------------GYTEAPRGEDVHWSMLGDNQKLFRWRCRAA 510
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 511 TYANWPVLRYMLRGNTISDAPLIIGSLDPCYSCTDR 546
>gi|74313288|ref|YP_311707.1| large subunit of hydrogenase 3 [Shigella sonnei Ss046]
gi|73856765|gb|AAZ89472.1| large subunit of hydrogenase 3 [Shigella sonnei Ss046]
gi|323167104|gb|EFZ52822.1| formate hydrogenlyase subunit 5 [Shigella sonnei 53G]
Length = 565
Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats.
Identities = 97/393 (24%), Positives = 166/393 (42%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 172 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 231
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 232 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 291
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ + +
Sbjct: 292 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 351
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 352 VQELVDVLLSTPNMEQRTVGIGRLDPEMARDFSNVGPMVRASGHARDTRADHPFVGYGLL 411
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ ++ + ++ L GP+ +P + A
Sbjct: 412 PMEVHSEQGCDVISRLKVRINEVYTALNM----IDYGLDNLPGGPLMVEGFTYIPHRFAL 467
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 468 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 500
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 501 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 533
>gi|20808126|ref|NP_623297.1| Ni,Fe-hydrogenase III large subunit [Thermoanaerobacter
tengcongensis MB4]
gi|254479095|ref|ZP_05092448.1| Respiratory-chain NADH dehydrogenase, 30 Kd subunit domain protein
[Carboxydibrachium pacificum DSM 12653]
gi|20516713|gb|AAM24901.1| Ni,Fe-hydrogenase III large subunit [Thermoanaerobacter
tengcongensis MB4]
gi|214034977|gb|EEB75698.1| Respiratory-chain NADH dehydrogenase, 30 Kd subunit domain protein
[Carboxydibrachium pacificum DSM 12653]
Length = 576
Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats.
Identities = 108/397 (27%), Positives = 170/397 (42%), Gaps = 32/397 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETK-TFL 59
++ K + GP H + L +DGE + D + +HRG EKL E++ +
Sbjct: 178 IEVKGEGIVEVPLGPLHITSDEPGHFRLYVDGEYIVDADYRLFYVHRGLEKLAESRMDYN 237
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
Q +R+ + AYA+AVE IE+P+R Q IR + E+ RI SHLLN+
Sbjct: 238 QVTFLAERICGICGYAHSVAYAMAVEAANRIEVPLRAQYIRTILLEVERIHSHLLNIGLA 297
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
A VG + + F REK M E +G R GGV +DI E
Sbjct: 298 AHLVGFDSGFMHFFRIREKAMQMAEILTGGRKTYGMNLIGGVRRDILKEEKVQALRLISE 357
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
S L ++ D+L F R +G + + A +G G +RGSG D R PY
Sbjct: 358 IRSELKELIDMLLNTPNFISRTQGVGRLDPKVARNFGSVGPNLRGSGYGRDTRADHPYCA 417
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + +++ + D R LVR E+ ES+ II +C++ L GP+ P
Sbjct: 418 YKHVSWNVISKEGCDVLSRVLVRAEELFESLDIIERCLSDL----PPGPILHEGFTYTPY 473
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
A EAP+GE ++++ ++ YR ++RA
Sbjct: 474 TFAL---------------------------GYTEAPRGENVHWVMTANQHQVYRWRVRA 506
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Y + + ++ G+ +AD I+ S+D + +R
Sbjct: 507 STYNNWPVLRYMFYGNTVADAPLIVASIDPCYSCAER 543
>gi|317493924|ref|ZP_07952341.1| respiratory-chain NADH dehydrogenase [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316918251|gb|EFV39593.1| respiratory-chain NADH dehydrogenase [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 567
Score = 323 bits (828), Expect = 4e-86, Method: Composition-based stats.
Identities = 102/398 (25%), Positives = 170/398 (42%), Gaps = 35/398 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ KS + GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 171 INESKSGK-IVPIGPLHITSDEPGHFRLFVDGEDIIDADYRLFYVHRGMEKLAETRMGYN 229
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE +GI++P R Q IR + E+ R+ SHLLN+
Sbjct: 230 EVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQAIRSILLEVERLHSHLLNLGLS 289
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG + + F REK M E +G+R GG+ +D+ + +
Sbjct: 290 CHFVGFDSGFMQFFRVREKSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIKTRILAAE 349
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ + + D+L +QR V +G + + A + G MIR SG A D R P+
Sbjct: 350 MRAEVKTLVDILFSTPNMEQRTVGVGRLDPQIARDFSNVGPMIRASGHARDTRVDHPFAG 409
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y L +I D R VR+ E+ ++ +I ++ L G
Sbjct: 410 YDLLPMEIHTETGCDVISRVKVRVNEVFTALNMIDFGLDNLPGGP--------------- 454
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L EG+ +P EAP+G+ + ++ K YR + R
Sbjct: 455 -----------------LSVEGFTYIPNRFALGFSEAPRGDDIHWSMTGDNQKLYRWRCR 497
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A Y++ + ++ +G+ ++D I+GSLD + DR
Sbjct: 498 AATYSNWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 535
>gi|307565984|ref|ZP_07628442.1| respiratory-chain NADH dehydrogenase, 49 Kd subunit [Prevotella
amnii CRIS 21A-A]
gi|307345172|gb|EFN90551.1| respiratory-chain NADH dehydrogenase, 49 Kd subunit [Prevotella
amnii CRIS 21A-A]
Length = 525
Score = 323 bits (828), Expect = 4e-86, Method: Composition-based stats.
Identities = 131/391 (33%), Positives = 202/391 (51%), Gaps = 29/391 (7%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ +NFGPQHPA HGVLRL LDGE V+R+ PH+G +HRG EKL E ++ Q +
Sbjct: 164 DDDYVVNFGPQHPAMHGVLRLQTVLDGETVKRIYPHLGYIHRGIEKLCEEFSYPQTLALT 223
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DR++Y++ M HA +E+ LG+E+ R + IR + E+ RI +HLL + A D+GA
Sbjct: 224 DRMNYLSAMMHRHALVGVIEEGLGVELSDRIKYIRTIMDELQRIDNHLLYTSCVAQDLGA 283
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
LT L+G +RE ++ E +G R+ Y+R GG+ DI V+++ C +
Sbjct: 284 LTAFLYGMRDREHVLNVMEETTGGRLIQNYYRIGGLQADIDAHFVDNVKKLCKYLRPMVQ 343
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ D+ N I +R +G + ED+ + +G R +G D+RK PY+ Y ++DF
Sbjct: 344 EYLDVFGDNVITHKRLEKVGYMSREDSISYAVTGPAGRAAGWKNDVRKHHPYDMYDKVDF 403
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ HGD DRY + E+ ES+ II Q ++ + G I+
Sbjct: 404 KEVVLTHGDSMDRYYCHIKEIYESLNIIEQLIDNI----PEGDFYIKQRPII-------- 451
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
VP G+ + +VE GEFG YL S G PYR K R G +
Sbjct: 452 -----------------KVPQGQWFFSVEGASGEFGCYLDSRGDKSPYRVKFRPMGLTLV 494
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A++ + +G ++AD+ + +LD V ++DR
Sbjct: 495 GALDKMLRGEKVADLITNVAALDFVIPDIDR 525
>gi|330470489|ref|YP_004408232.1| NADH dehydrogenase (quinone) [Verrucosispora maris AB-18-032]
gi|328813460|gb|AEB47632.1| NADH dehydrogenase (quinone) [Verrucosispora maris AB-18-032]
Length = 390
Score = 323 bits (827), Expect = 4e-86, Method: Composition-based stats.
Identities = 133/393 (33%), Positives = 207/393 (52%), Gaps = 27/393 (6%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++ +N GPQHP+ HGVLRL L LDGE V +P +G +HRG EKL E + + Q +
Sbjct: 24 EQLGTDMVLNIGPQHPSTHGVLRLKLTLDGERVVAAEPIVGYMHRGAEKLFEVRDYRQII 83
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
+R D+++ E LAVE+L+G+E+P R +R+ +E+ R+L+HL+ + + ++
Sbjct: 84 VLANRHDWLSAFANELGVVLAVERLMGMEVPERATWLRMALAELNRVLNHLMFLGSYPLE 143
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA+TP + F ERE L E SG R+H + R GG+ +++P
Sbjct: 144 MGAITPMFYAFRERETLQAVMEEVSGGRIHYMFNRVGGLKEEVPSGWTGRARAAIGEVRR 203
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ D+ +L+ N IF R V IG + DA +G SG + R SG DLR+ +PY Y +
Sbjct: 204 RMPDLDNLIRRNEIFLARTVGIGVLSAADAAAFGASGPVARASGLDLDLRRDEPYLAYDQ 263
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LD + GDC+ R+ V + ++ S+ + QC++R+ GP++ PK++
Sbjct: 264 LDVPVVTRTTGDCHARFEVLLDQVYASLDLAEQCLDRVDRLT--GPINTRLPKVL----- 316
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
P G YA E P G G YL+S G P+R K+R Y
Sbjct: 317 --------------------KAPEGHTYAWTENPLGINGYYLVSRGEKTPWRLKLRTASY 356
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
A++QA+ L G + D+ AILGS+ V G++D
Sbjct: 357 ANVQALATLLPGCLVPDLIAILGSMFFVVGDID 389
>gi|333031512|ref|ZP_08459573.1| NADH-ubiquinone oxidoreductase chain 49kDa [Bacteroides coprosuis
DSM 18011]
gi|332742109|gb|EGJ72591.1| NADH-ubiquinone oxidoreductase chain 49kDa [Bacteroides coprosuis
DSM 18011]
Length = 539
Score = 323 bits (827), Expect = 5e-86, Method: Composition-based stats.
Identities = 141/392 (35%), Positives = 207/392 (52%), Gaps = 29/392 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ + +N GPQHPA HGVLR LDGE + ++D H G +HRG EKL E T+ Q + Y
Sbjct: 177 EPDEYVVNIGPQHPATHGVLRFRTSLDGEFINKIDIHCGYIHRGIEKLCEGLTYQQTIGY 236
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDY+A + HA + VEK + +++ R IR + E+ RI SHLL +T MD+G
Sbjct: 237 MDRLDYLAALQSRHALCMCVEKAIDLQVSDRVLYIRTIMDELQRINSHLLFFSTLCMDLG 296
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
ALT +GF +REK++ E +G R+ Y GGV DI P+ V + + P L
Sbjct: 297 ALTAFFYGFRDREKVLDILEETTGGRLILHYNIIGGVENDIHPDFVRKVKELLEYLPKVL 356
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ + T N I + R + +G + EDA +G +G + R S A D+RK PY Y ++D
Sbjct: 357 VEYKKVFTDNVIARNRMIGVGVLTHEDAISFGATGPVGRASNWACDVRKRIPYGVYDQVD 416
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F + GD Y RYLVRM E+ ES++II ++ +
Sbjct: 417 FKEVVRPEGDSYARYLVRMEEIEESMRIIAALIDNIPEGTTR------------------ 458
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
+ +P G YA+VEA +GEFGV++ S G PYR K R+ G
Sbjct: 459 -----------EKTKPIIRIPEGSYYASVEASRGEFGVFIESKGDKNPYRMKFRSTGLPL 507
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ ++ + +G ++AD+ AI G+LD V ++DR
Sbjct: 508 VACVDTIARGAKIADLIAIGGTLDYVVPDIDR 539
>gi|301645299|ref|ZP_07245249.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
146-1]
gi|301076417|gb|EFK91223.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
146-1]
Length = 576
Score = 323 bits (827), Expect = 5e-86, Method: Composition-based stats.
Identities = 97/393 (24%), Positives = 166/393 (42%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 183 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 242
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 243 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 302
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ + +
Sbjct: 303 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 362
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 363 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 422
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ ++ + ++ L GP+ +P + A
Sbjct: 423 PMEVHSEQGCDVISRLKVRINEVYTALNM----IDYGLDNLPGGPLMVEGFTYIPHRFAL 478
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 479 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 511
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 512 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 544
>gi|293406213|ref|ZP_06650139.1| formate hydrogenlyase subunit 5 [Escherichia coli FVEC1412]
gi|298381950|ref|ZP_06991547.1| formate hydrogenlyase subunit 5 [Escherichia coli FVEC1302]
gi|300899960|ref|ZP_07118163.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
198-1]
gi|291426219|gb|EFE99251.1| formate hydrogenlyase subunit 5 [Escherichia coli FVEC1412]
gi|298277090|gb|EFI18606.1| formate hydrogenlyase subunit 5 [Escherichia coli FVEC1302]
gi|300356469|gb|EFJ72339.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
198-1]
Length = 576
Score = 322 bits (826), Expect = 5e-86, Method: Composition-based stats.
Identities = 97/393 (24%), Positives = 166/393 (42%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 183 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 242
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 243 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 302
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ + +
Sbjct: 303 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 362
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 363 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 422
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ ++ + ++ L GP+ +P + A
Sbjct: 423 PMEVHSEQGCDVISRLKVRINEVYTALNM----IDYGLDNLPGGPLMVEGFTYIPHRFAL 478
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 479 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 511
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 512 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 544
>gi|283786729|ref|YP_003366594.1| formate hydrogenlyase subunit 5 [Citrobacter rodentium ICC168]
gi|282950183|emb|CBG89819.1| formate hydrogenlyase subunit 5 [Citrobacter rodentium ICC168]
Length = 569
Score = 322 bits (826), Expect = 5e-86, Method: Composition-based stats.
Identities = 99/393 (25%), Positives = 168/393 (42%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ + +
Sbjct: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRD 355
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + + A + G M+R SG A D R P+ Y L
Sbjct: 356 VQELVDMLLSTPNMEQRTVGIGRLDPQIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ S+ +I ++ L G GP+ +P + A
Sbjct: 416 PMEVHSEQGCDVISRLKVRINEVYTSLNMIDFGLDNLPG----GPLMVEGFTYIPHRFAL 471
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 472 ---------------------------GFSEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 504
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 505 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537
>gi|288801145|ref|ZP_06406601.1| NADH dehydrogenase I, D subunit [Prevotella sp. oral taxon 299 str.
F0039]
gi|288332079|gb|EFC70561.1| NADH dehydrogenase I, D subunit [Prevotella sp. oral taxon 299 str.
F0039]
Length = 522
Score = 322 bits (826), Expect = 5e-86, Method: Composition-based stats.
Identities = 143/390 (36%), Positives = 211/390 (54%), Gaps = 29/390 (7%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
F +N GPQHPA HGVLRL LDGE ++++ PH G +HRG EK+ E + Q + + D
Sbjct: 162 DDFVVNIGPQHPATHGVLRLQTILDGETIKKIYPHCGYIHRGIEKISEGFVYPQTLGFAD 221
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+DY++ M HA VE+ LG+E+ R + IR + E+ RI SHLL + D+GAL
Sbjct: 222 RMDYLSAMQTRHALVGVVEEALGVELSDRIKYIRTIMDELQRIDSHLLFYSCCGQDLGAL 281
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
T ++G +RE+++ E +G R+ Y+R GG +DI LVE++ C +
Sbjct: 282 TAFIYGMRDREEVLNVMEETTGGRLIQNYYRIGGCQEDIDVNLVENVKKLCKYLKPKFKE 341
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
D+L+ NRIF R +G + EDA +G +G R +G A D+RK PY Y ++DFD
Sbjct: 342 YHDILSSNRIFMNRFKGVGVLSKEDAISYGCTGGTGRAAGWANDVRKHHPYAMYDKVDFD 401
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
HGD YDRYLVRM E+ +SV+I+ Q ++ + G ++
Sbjct: 402 EITFTHGDSYDRYLVRMAELEQSVRILEQLIDNI----PEGDFYIKQKAVI--------- 448
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+P G+ Y + E +GE GVYL S G PYR K R G +
Sbjct: 449 ----------------RIPEGQWYFSCEGSRGEIGVYLDSKGDKMPYRLKFRPMGLPLVS 492
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A++ +C+G ++AD+ A+ SLD V ++DR
Sbjct: 493 ALDEMCRGEKIADLIAVGASLDYVIPDIDR 522
>gi|213417094|ref|ZP_03350238.1| formate hydrogenlyase subunit 5 [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
Length = 478
Score = 322 bits (826), Expect = 5e-86, Method: Composition-based stats.
Identities = 101/393 (25%), Positives = 168/393 (42%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 85 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 144
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 145 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 204
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ E +
Sbjct: 205 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKEDMIQTRQLAQQMRRD 264
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 265 VQELVDMLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 324
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ S+ +I ++ L G GP+ +P + A
Sbjct: 325 PMEVHSEQGCDVISRLKVRINEVYTSLNMIDFGLDNLPG----GPLMVEGFTYIPHRFAL 380
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 381 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 413
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 414 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 446
>gi|218690845|ref|YP_002399057.1| hydrogenase 3, large subunit [Escherichia coli ED1a]
gi|218428409|emb|CAR09334.2| hydrogenase 3, large subunit [Escherichia coli ED1a]
Length = 569
Score = 322 bits (826), Expect = 5e-86, Method: Composition-based stats.
Identities = 97/393 (24%), Positives = 166/393 (42%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ + +
Sbjct: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 355
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 356 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ ++ + ++ L GP+ +P + A
Sbjct: 416 PMEVHSEQGCDVISRLKVRINEVYTALNM----LDYGLDNLPGGPLMVEGFTYIPHRFAL 471
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 472 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 504
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 505 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537
>gi|251790298|ref|YP_003005019.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Dickeya zeae
Ech1591]
gi|247538919|gb|ACT07540.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Dickeya zeae
Ech1591]
Length = 575
Score = 322 bits (826), Expect = 5e-86, Method: Composition-based stats.
Identities = 105/397 (26%), Positives = 169/397 (42%), Gaps = 32/397 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ + + GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 178 INEATGDTRVVPIGPMHITSDEPGHFRLFVDGEQIIDADYRLFYVHRGMEKLAETRMGYN 237
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY ++E LG+ +P R IR + E+ R+ SHLLN+
Sbjct: 238 EVTFLSDRVCGICGFTHSVAYTSSIENALGVVVPARAHTIRSILLEVERLHSHLLNIGLS 297
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
+ VG T + F REK M E +G+R GG+ +DI E
Sbjct: 298 SHFVGFDTGFMQFFRVREKSMQIAEILTGARKTYGLNLIGGIRRDILKEDRLKTIKLIRE 357
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++D+L G QR IG + + A + G MIR SG D+R P+
Sbjct: 358 MREEVTQLTDMLLGTANMMQRTQGIGILDRQVARDYSPVGPMIRASGFQRDVRVDHPFSG 417
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y +L ++ GD Y R LVR+ E+ S+ +I ++ + GP+ P
Sbjct: 418 YLDLPMELHHLDDGDVYSRVLVRVREVFTSLAMIEFGLDNM----PEGPILNEHIHYQPH 473
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
K A EAP+GE + ++ K +R + RA
Sbjct: 474 KFAL---------------------------GFTEAPRGEDIHWSMTGDNQKLFRWRCRA 506
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YA+ + F+ +G+ ++D I+GSLD + DR
Sbjct: 507 ATYANWPVLRFMLRGNTISDAPLIIGSLDPCYSCTDR 543
>gi|213860000|ref|ZP_03385704.1| formate hydrogenlyase subunit 5 [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
Length = 404
Score = 322 bits (826), Expect = 5e-86, Method: Composition-based stats.
Identities = 101/388 (26%), Positives = 166/388 (42%), Gaps = 32/388 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVPYFDRL 68
+ GP H + L +DGE + D + +HRG EKL ET+ + + DR+
Sbjct: 16 VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 75
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+ AY +VE +GI++P R Q+IR + E+ R+ SHLLN+ G +
Sbjct: 76 CGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG 135
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
+ F RE M E +G+R GG+ +D+ E + + ++
Sbjct: 136 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKEDMIQTRQLAQQMRRDVQELV 195
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
D+L +QR V IG + E A + G M+R SG A D R P+ Y L ++
Sbjct: 196 DMLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVH 255
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
+ D R VR+ E+ S+ +I ++ L G GP+ +P + A
Sbjct: 256 SEQGCDVISRLKVRINEVYTSLNMIDFGLDNLPG----GPLMVEGFTYIPHRFAL----- 306
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
EAP+G+ + ++ K YR + RA YA+ +
Sbjct: 307 ----------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTL 344
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ +G+ ++D I+GSLD + DR
Sbjct: 345 RYMLRGNTVSDAPLIIGSLDPCYSCTDR 372
>gi|187776021|ref|ZP_02799754.2| formate hydrogenlyase, subunit E [Escherichia coli O157:H7 str.
EC4196]
gi|188024943|ref|ZP_02774976.2| formate hydrogenlyase, subunit E [Escherichia coli O157:H7 str.
EC4113]
gi|189009955|ref|ZP_02803710.2| formate hydrogenlyase, subunit E [Escherichia coli O157:H7 str.
EC4076]
gi|189402140|ref|ZP_02780473.2| formate hydrogenlyase, subunit E [Escherichia coli O157:H7 str.
EC4401]
gi|189403180|ref|ZP_02793819.2| formate hydrogenlyase, subunit E [Escherichia coli O157:H7 str.
EC4486]
gi|189404214|ref|ZP_02787887.2| formate hydrogenlyase, subunit E [Escherichia coli O157:H7 str.
EC4501]
gi|189405063|ref|ZP_02812983.2| formate hydrogenlyase, subunit E [Escherichia coli O157:H7 str.
EC869]
gi|189405921|ref|ZP_02825205.2| formate hydrogenlyase, subunit E [Escherichia coli O157:H7 str.
EC508]
gi|193065053|ref|ZP_03046128.1| formate hydrogenlyase, subunit E [Escherichia coli E22]
gi|193069658|ref|ZP_03050610.1| formate hydrogenlyase, subunit E [Escherichia coli E110019]
gi|194427826|ref|ZP_03060372.1| formate hydrogenlyase, subunit E [Escherichia coli B171]
gi|208814197|ref|ZP_03255526.1| formate hydrogenlyase, subunit E [Escherichia coli O157:H7 str.
EC4045]
gi|208819490|ref|ZP_03259810.1| formate hydrogenlyase, subunit E [Escherichia coli O157:H7 str.
EC4042]
gi|209400571|ref|YP_002272184.1| formate hydrogenlyase, subunit E [Escherichia coli O157:H7 str.
EC4115]
gi|217327903|ref|ZP_03443986.1| formate hydrogenlyase, subunit E [Escherichia coli O157:H7 str.
TW14588]
gi|227888259|ref|ZP_04006064.1| formate hydrogenlyase, subunit E [Escherichia coli 83972]
gi|291284048|ref|YP_003500866.1| Formate hydrogenlyase, subunit E [Escherichia coli O55:H7 str.
CB9615]
gi|300815875|ref|ZP_07096099.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
107-1]
gi|300820496|ref|ZP_07100647.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
119-7]
gi|300906776|ref|ZP_07124458.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
84-1]
gi|300976819|ref|ZP_07173636.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
45-1]
gi|301049522|ref|ZP_07196480.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
185-1]
gi|301305388|ref|ZP_07211482.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
124-1]
gi|301326244|ref|ZP_07219627.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
78-1]
gi|331669454|ref|ZP_08370300.1| formate hydrogenlyase subunit 5 (FHL subunit 5)(Hydrogenase-3
component E) [Escherichia coli TA271]
gi|331678695|ref|ZP_08379369.1| formate hydrogenlyase subunit 5 (FHL subunit 5)(Hydrogenase-3
component E) [Escherichia coli H591]
gi|332280622|ref|ZP_08393035.1| hydrogenase 3 large subunit [Shigella sp. D9]
gi|187769658|gb|EDU33502.1| formate hydrogenlyase, subunit E [Escherichia coli O157:H7 str.
EC4196]
gi|188015801|gb|EDU53923.1| formate hydrogenlyase, subunit E [Escherichia coli O157:H7 str.
EC4113]
gi|189003368|gb|EDU72354.1| formate hydrogenlyase, subunit E [Escherichia coli O157:H7 str.
EC4076]
gi|189357238|gb|EDU75657.1| formate hydrogenlyase, subunit E [Escherichia coli O157:H7 str.
EC4401]
gi|189362108|gb|EDU80527.1| formate hydrogenlyase, subunit E [Escherichia coli O157:H7 str.
EC4486]
gi|189366903|gb|EDU85319.1| formate hydrogenlyase, subunit E [Escherichia coli O157:H7 str.
EC4501]
gi|189372181|gb|EDU90597.1| formate hydrogenlyase, subunit E [Escherichia coli O157:H7 str.
EC869]
gi|189377517|gb|EDU95933.1| formate hydrogenlyase, subunit E [Escherichia coli O157:H7 str.
EC508]
gi|192927350|gb|EDV81969.1| formate hydrogenlyase, subunit E [Escherichia coli E22]
gi|192957021|gb|EDV87472.1| formate hydrogenlyase, subunit E [Escherichia coli E110019]
gi|194414059|gb|EDX30335.1| formate hydrogenlyase, subunit E [Escherichia coli B171]
gi|208735474|gb|EDZ84161.1| formate hydrogenlyase, subunit E [Escherichia coli O157:H7 str.
EC4045]
gi|208739613|gb|EDZ87295.1| formate hydrogenlyase, subunit E [Escherichia coli O157:H7 str.
EC4042]
gi|209161971|gb|ACI39404.1| formate hydrogenlyase, subunit E [Escherichia coli O157:H7 str.
EC4115]
gi|217320270|gb|EEC28695.1| formate hydrogenlyase, subunit E [Escherichia coli O157:H7 str.
TW14588]
gi|227834528|gb|EEJ44994.1| formate hydrogenlyase, subunit E [Escherichia coli 83972]
gi|290763921|gb|ADD57882.1| Formate hydrogenlyase, subunit E [Escherichia coli O55:H7 str.
CB9615]
gi|294491135|gb|ADE89891.1| formate hydrogenlyase, subunit E [Escherichia coli IHE3034]
gi|300298753|gb|EFJ55138.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
185-1]
gi|300401470|gb|EFJ85008.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
84-1]
gi|300410005|gb|EFJ93543.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
45-1]
gi|300526760|gb|EFK47829.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
119-7]
gi|300531804|gb|EFK52866.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
107-1]
gi|300839308|gb|EFK67068.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
124-1]
gi|300847089|gb|EFK74849.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
78-1]
gi|315254503|gb|EFU34471.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
85-1]
gi|315289282|gb|EFU48677.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
110-3]
gi|315293722|gb|EFU53074.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
153-1]
gi|315298791|gb|EFU58045.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
16-3]
gi|320189053|gb|EFW63712.1| Formate hydrogenlyase subunit 5 [Escherichia coli O157:H7 str.
EC1212]
gi|320202371|gb|EFW76941.1| Formate hydrogenlyase subunit 5 [Escherichia coli EC4100B]
gi|323946398|gb|EGB42426.1| respiratory-chain NADH dehydrogenase [Escherichia coli H120]
gi|323957067|gb|EGB52792.1| respiratory-chain NADH dehydrogenase [Escherichia coli H263]
gi|324005683|gb|EGB74902.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
57-2]
gi|324017034|gb|EGB86253.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
117-3]
gi|324111346|gb|EGC05328.1| respiratory-chain NADH dehydrogenase [Escherichia fergusonii B253]
gi|324119971|gb|EGC13849.1| respiratory-chain NADH dehydrogenase [Escherichia coli E1167]
gi|326339207|gb|EGD63022.1| Formate hydrogenlyase subunit 5 [Escherichia coli O157:H7 str.
1044]
gi|326342910|gb|EGD66678.1| Formate hydrogenlyase subunit 5 [Escherichia coli O157:H7 str.
1125]
gi|331063122|gb|EGI35035.1| formate hydrogenlyase subunit 5 (FHL subunit 5)(Hydrogenase-3
component E) [Escherichia coli TA271]
gi|331073525|gb|EGI44846.1| formate hydrogenlyase subunit 5 (FHL subunit 5)(Hydrogenase-3
component E) [Escherichia coli H591]
gi|332102974|gb|EGJ06320.1| hydrogenase 3 large subunit [Shigella sp. D9]
Length = 576
Score = 322 bits (826), Expect = 5e-86, Method: Composition-based stats.
Identities = 97/393 (24%), Positives = 166/393 (42%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 183 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 242
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 243 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 302
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ + +
Sbjct: 303 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 362
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 363 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 422
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ ++ + ++ L GP+ +P + A
Sbjct: 423 PMEVHSEQGCDVISRLKVRINEVYTALNM----IDYGLDNLPGGPLMVEGFTYIPHRFAL 478
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 479 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 511
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 512 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 544
>gi|312183555|gb|ADQ42347.1| NADH:ubiquinone oxidoreductase D [Methanosaeta harundinacea]
Length = 571
Score = 322 bits (826), Expect = 6e-86, Method: Composition-based stats.
Identities = 133/398 (33%), Positives = 203/398 (51%), Gaps = 30/398 (7%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M+ K S ++ GPQH G L L +DGE V++ +G +H+G EK++E +T+ Q
Sbjct: 202 MEIKGSSEMILHMGPQHAVVPGPFLLDLLVDGERVKKAFLDVGYIHKGIEKIMENRTYQQ 261
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+P DRL Y+A + AY AVE+LLGIE P R Q IR++ E+ RI SHLL
Sbjct: 262 GIPITDRLCYMAAITNNEAYCGAVERLLGIEAPERAQYIRMILQELSRIQSHLLGTGEFL 321
Query: 121 MDV--GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
+ +P L+ +RE ++ E +G+R++ ++ R GGV D+P +
Sbjct: 322 TLIASAVYSPFLYMIIDREDVLTCIESVTGARINHSFVRFGGVRNDLPDGFKDMTLDTLK 381
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
+ DL + + I+++R IGT+ +DA G SG +R S +D+R+ PY
Sbjct: 382 MIREKTAEYKDLFSSDSIYRKRMEGIGTLSPQDARRLGVSGPPLRASDTPYDMRREDPYL 441
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
Y ++DF++ K GD R VR+ E+ ES II QC++++ GP+
Sbjct: 442 LYRDMDFEVITRKEGDSKARVEVRLDEILESCYIIEQCLDQIPN----GPIM-------- 489
Query: 299 PKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
+ + GE Y VE +GE G +++SDG +KP + K R
Sbjct: 490 ----------------AEGVPKKIKPEPGEAYYRVEDHRGEMGFFVVSDGSDKPVKVKAR 533
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
P YA+ QA+ L +G +ADV AI GS+D EVDR
Sbjct: 534 GPVYAYFQALPPLLEGVYIADVVAIAGSMDACTSEVDR 571
>gi|320186507|gb|EFW61235.1| Formate hydrogenlyase subunit 5 [Shigella flexneri CDC 796-83]
Length = 576
Score = 322 bits (826), Expect = 6e-86, Method: Composition-based stats.
Identities = 97/393 (24%), Positives = 166/393 (42%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 183 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 242
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 243 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 302
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ + +
Sbjct: 303 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 362
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 363 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 422
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ ++ + ++ L GP+ +P + A
Sbjct: 423 PMEVHSEQGCDVISRLKVRINEVYTALNM----IDYGLDNLPGGPLMVEGFTYIPHRFAL 478
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 479 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 511
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 512 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 544
>gi|238061443|ref|ZP_04606152.1| NADH-quinone oxidoreductase, D2 subunit [Micromonospora sp. ATCC
39149]
gi|237883254|gb|EEP72082.1| NADH-quinone oxidoreductase, D2 subunit [Micromonospora sp. ATCC
39149]
Length = 386
Score = 322 bits (826), Expect = 6e-86, Method: Composition-based stats.
Identities = 135/393 (34%), Positives = 207/393 (52%), Gaps = 27/393 (6%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++ +N GPQHP+ HGVLRL L LDGE V +P +G +HRG EKL E + + Q +
Sbjct: 20 EQLGTDMVLNIGPQHPSTHGVLRLKLVLDGERVVAAEPIVGYMHRGAEKLFEVRDYRQII 79
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
+R D+++ + E LAVE+L+G+E+P R +R+ +E+ R+L+HL+ + + ++
Sbjct: 80 VLANRHDWLSAFSNELGVVLAVERLMGLEVPERATWLRMALAELNRVLNHLMFLGSYPLE 139
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA+TP + F ERE + E SG R+H + R GG+ +++P
Sbjct: 140 IGAITPVFYAFRERETIQAVMEEVSGGRIHYMFNRVGGLKEEVPAGWTRRARAAIGEVHR 199
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L D+ L+ N IF R V +G + DA +G SG + R SG DLR+ +PY Y +
Sbjct: 200 RLPDLDHLIRRNEIFLARTVGVGVLSAADAAAFGASGPVARASGLDLDLRRDEPYLAYDQ 259
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LD + GDC+ R+ V + ++ S+ + QC++R+ GPV+ PK+V
Sbjct: 260 LDVPVVTKTAGDCHARFEVLLDQVYASLDLAEQCLDRVDRLT--GPVNTRLPKVV----- 312
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
P G YA E P G G YL+S G P+R K+R Y
Sbjct: 313 --------------------KAPEGHTYAWTENPLGINGYYLVSRGEKTPWRLKLRTASY 352
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
A++QA+ L G + D+ AILGS+ V G+VD
Sbjct: 353 ANVQALATLLPGCLVPDLIAILGSMFFVVGDVD 385
>gi|170681957|ref|YP_001744870.1| formate hydrogenlyase, subunit E [Escherichia coli SMS-3-5]
gi|194438937|ref|ZP_03071021.1| formate hydrogenlyase, subunit E [Escherichia coli 101-1]
gi|254037760|ref|ZP_04871818.1| formate hydrogenlyase [Escherichia sp. 1_1_43]
gi|293415971|ref|ZP_06658611.1| formate hydrogenlyase subunit 5 [Escherichia coli B185]
gi|300930579|ref|ZP_07145971.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
187-1]
gi|300947001|ref|ZP_07161227.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
116-1]
gi|300954961|ref|ZP_07167373.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
175-1]
gi|301027131|ref|ZP_07190500.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
69-1]
gi|301027396|ref|ZP_07190735.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
196-1]
gi|331643405|ref|ZP_08344536.1| formate hydrogenlyase subunit 5 (FHL subunit 5)(Hydrogenase-3
component E) [Escherichia coli H736]
gi|331658829|ref|ZP_08359771.1| formate hydrogenlyase subunit 5 (FHL subunit 5)(Hydrogenase-3
component E) [Escherichia coli TA206]
gi|331664275|ref|ZP_08365181.1| formate hydrogenlyase subunit 5 (FHL subunit 5)(Hydrogenase-3
component E) [Escherichia coli TA143]
gi|331674229|ref|ZP_08374989.1| formate hydrogenlyase subunit 5 (FHL subunit 5)(Hydrogenase-3
component E) [Escherichia coli TA280]
gi|331684334|ref|ZP_08384926.1| formate hydrogenlyase subunit 5 (FHL subunit 5)(Hydrogenase-3
component E) [Escherichia coli H299]
gi|170519675|gb|ACB17853.1| formate hydrogenlyase, subunit E [Escherichia coli SMS-3-5]
gi|194422058|gb|EDX38061.1| formate hydrogenlyase, subunit E [Escherichia coli 101-1]
gi|226839384|gb|EEH71405.1| formate hydrogenlyase [Escherichia sp. 1_1_43]
gi|291432160|gb|EFF05142.1| formate hydrogenlyase subunit 5 [Escherichia coli B185]
gi|299879310|gb|EFI87521.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
196-1]
gi|300318096|gb|EFJ67880.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
175-1]
gi|300395163|gb|EFJ78701.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
69-1]
gi|300453388|gb|EFK17008.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
116-1]
gi|300461521|gb|EFK25014.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
187-1]
gi|320194859|gb|EFW69488.1| Formate hydrogenlyase subunit 5 [Escherichia coli WV_060327]
gi|323935723|gb|EGB32037.1| respiratory-chain NADH dehydrogenase [Escherichia coli E1520]
gi|323941448|gb|EGB37631.1| respiratory-chain NADH dehydrogenase [Escherichia coli E482]
gi|323966868|gb|EGB62297.1| respiratory-chain NADH dehydrogenase [Escherichia coli M863]
gi|323971550|gb|EGB66783.1| respiratory-chain NADH dehydrogenase [Escherichia coli TA007]
gi|323978669|gb|EGB73751.1| respiratory-chain NADH dehydrogenase [Escherichia coli TW10509]
gi|325496238|gb|EGC94097.1| formate hydrogenlyase, subunit E [Escherichia fergusonii ECD227]
gi|331036876|gb|EGI09100.1| formate hydrogenlyase subunit 5 (FHL subunit 5)(Hydrogenase-3
component E) [Escherichia coli H736]
gi|331053411|gb|EGI25440.1| formate hydrogenlyase subunit 5 (FHL subunit 5)(Hydrogenase-3
component E) [Escherichia coli TA206]
gi|331058206|gb|EGI30187.1| formate hydrogenlyase subunit 5 (FHL subunit 5)(Hydrogenase-3
component E) [Escherichia coli TA143]
gi|331068323|gb|EGI39718.1| formate hydrogenlyase subunit 5 (FHL subunit 5)(Hydrogenase-3
component E) [Escherichia coli TA280]
gi|331077949|gb|EGI49155.1| formate hydrogenlyase subunit 5 (FHL subunit 5)(Hydrogenase-3
component E) [Escherichia coli H299]
Length = 576
Score = 322 bits (826), Expect = 6e-86, Method: Composition-based stats.
Identities = 97/393 (24%), Positives = 166/393 (42%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 183 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 242
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 243 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 302
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ + +
Sbjct: 303 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 362
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 363 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 422
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ ++ + ++ L GP+ +P + A
Sbjct: 423 PMEVHSEQGCDVISRLKVRINEVYTALNM----IDYGLDNLPGGPLMVEGFTYIPHRFAL 478
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 479 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 511
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 512 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 544
>gi|303241788|ref|ZP_07328284.1| NADH-ubiquinone oxidoreductase chain 49kDa [Acetivibrio
cellulolyticus CD2]
gi|302590669|gb|EFL60421.1| NADH-ubiquinone oxidoreductase chain 49kDa [Acetivibrio
cellulolyticus CD2]
Length = 359
Score = 322 bits (825), Expect = 6e-86, Method: Composition-based stats.
Identities = 110/391 (28%), Positives = 187/391 (47%), Gaps = 33/391 (8%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
S+ I FGPQHP + L L L+ E V P IG +HRG EKL+E K F++ +
Sbjct: 2 SKRTIIPFGPQHPVLPEPIHLDLVLEDEKVVEAIPSIGFVHRGLEKLVEKKDFIEYIYVA 61
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
+R+ + Y+ A+E+++ IE+P R +R +++E R+ SH+L + A G
Sbjct: 62 ERICGICSFMHGMGYSQAIEQIMKIEVPERAVYLRTIWAEFSRLHSHMLWLGLLADAFGF 121
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ + REK++ E +G R+ + GGV +DI P ++ + + +
Sbjct: 122 ENLFMHCWRVREKILDIIEETTGGRVIFGSCKVGGVRKDIDPVTLKRMSKFVVDLEKEIK 181
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+IS + K R V +G + EDA G G M+R SG A D+RK Y YS+L+F
Sbjct: 182 EISSMFMNEYTVKHRLVGVGVLSKEDAHTLGAVGPMMRASGIAQDMRKLG-YGAYSQLEF 240
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ +GD YDR VR+ E+ +S+ +IRQ ++++ V+ +
Sbjct: 241 EPITRTNGDSYDRCAVRIDELFQSISLIRQAIDKIPDGPVDVKVTGN------------- 287
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
P GE +A +E P+GE Y+ +G R ++R P +A++
Sbjct: 288 -------------------PDGEFFARLEQPRGEVIYYVKGNGTKFLDRVRVRTPTFANI 328
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ + +G ADV ++ ++D +R
Sbjct: 329 PSLLKMLQGCDFADVPILILTIDPCISCTER 359
>gi|82778088|ref|YP_404437.1| large subunit of hydrogenase 3 [Shigella dysenteriae Sd197]
gi|309786196|ref|ZP_07680824.1| formate hydrogenlyase subunit 5 [Shigella dysenteriae 1617]
gi|81242236|gb|ABB62946.1| large subunit of hydrogenase 3 [Shigella dysenteriae Sd197]
gi|308925941|gb|EFP71420.1| formate hydrogenlyase subunit 5 [Shigella dysenteriae 1617]
Length = 569
Score = 322 bits (825), Expect = 6e-86, Method: Composition-based stats.
Identities = 97/393 (24%), Positives = 166/393 (42%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ + +
Sbjct: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 355
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 356 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ ++ + ++ L GP+ +P + A
Sbjct: 416 PMEVHSEQGCDVISRLKVRINEVYTALNM----IDYGLDNLPGGPLMVEGFTYIPHRFAL 471
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 472 ---------------------------GCAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 504
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 505 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537
>gi|218706215|ref|YP_002413734.1| hydrogenase 3, large subunit [Escherichia coli UMN026]
gi|218433312|emb|CAR14212.1| hydrogenase 3, large subunit [Escherichia coli UMN026]
Length = 569
Score = 322 bits (825), Expect = 6e-86, Method: Composition-based stats.
Identities = 97/393 (24%), Positives = 166/393 (42%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ + +
Sbjct: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 355
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 356 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ ++ + ++ L GP+ +P + A
Sbjct: 416 PMEVHSEQGCDVISRLKVRINEVYTALNM----IDYGLDNLPGGPLMVEGFTYIPHRFAL 471
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 472 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 504
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 505 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537
>gi|191171349|ref|ZP_03032898.1| formate hydrogenlyase, subunit E [Escherichia coli F11]
gi|300975043|ref|ZP_07172844.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
200-1]
gi|190908283|gb|EDV67873.1| formate hydrogenlyase, subunit E [Escherichia coli F11]
gi|300308811|gb|EFJ63331.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
200-1]
gi|324013676|gb|EGB82895.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
60-1]
Length = 576
Score = 322 bits (825), Expect = 6e-86, Method: Composition-based stats.
Identities = 97/393 (24%), Positives = 166/393 (42%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 183 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 242
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 243 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 302
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ + +
Sbjct: 303 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 362
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 363 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 422
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ ++ + ++ L GP+ +P + A
Sbjct: 423 PMEVHSEQGCDVISRLKVRINEVYTALNM----IDYGLDNLPGGPLMVEGFTYIPHRFAL 478
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 479 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 511
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 512 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 544
>gi|323951060|gb|EGB46936.1| respiratory-chain NADH dehydrogenase [Escherichia coli H252]
Length = 576
Score = 322 bits (825), Expect = 7e-86, Method: Composition-based stats.
Identities = 97/393 (24%), Positives = 165/393 (41%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 183 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 242
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 243 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 302
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ + +
Sbjct: 303 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 362
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 363 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 422
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR E+ ++ + ++ L GP+ +P + A
Sbjct: 423 PMEVHSEQGCDVISRLKVRSNEVYTALNM----IDYGLDNLPGGPLMVEGFTYIPHRFAL 478
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 479 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 511
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 512 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 544
>gi|300941097|ref|ZP_07155609.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
21-1]
gi|300454140|gb|EFK17633.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
21-1]
Length = 576
Score = 322 bits (825), Expect = 7e-86, Method: Composition-based stats.
Identities = 97/393 (24%), Positives = 166/393 (42%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 183 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 242
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 243 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 302
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ + +
Sbjct: 303 GFDSGFMQFFRVRETSMKMAEVLTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 362
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 363 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 422
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ ++ + ++ L GP+ +P + A
Sbjct: 423 PMEVHSEQGCDVISRLKVRINEVYTALNM----IDYGLDNLPGGPLMVEGFTYIPHRFAL 478
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 479 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 511
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 512 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 544
>gi|254173911|ref|ZP_04880582.1| hydrogenase-4 component G [Thermococcus sp. AM4]
gi|214032160|gb|EEB72991.1| hydrogenase-4 component G [Thermococcus sp. AM4]
Length = 545
Score = 322 bits (825), Expect = 7e-86, Method: Composition-based stats.
Identities = 106/394 (26%), Positives = 165/394 (41%), Gaps = 32/394 (8%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETK-TFLQA 61
K + + GP HP H L + G+ + +HRG EKL E++ T Q
Sbjct: 153 KPRPDIIEVPLGPYHPTLHEPEYFELYVKGDKIVDAKYRGFHIHRGMEKLAESRMTLNQV 212
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+R+ + AY AVE I +P R + IR + E+ R+ SHLL
Sbjct: 213 PFLAERICGICGCTHSTAYCQAVEDATNIYVPERARYIRTIMLEVERLHSHLLWFGVACH 272
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
+G + + + RE +M E +G+R GGV +DIP E + D
Sbjct: 273 LLGFDSGFMHLWRAREYIMDIAELITGNRKTYGINLIGGVRRDIPEEKKRKVLELLDLAE 332
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+I D + K+R N+G + + G G + R SG D+R+ PY Y
Sbjct: 333 KDSREILDNVVKMGELKERMENVGVLPKKKGREIGVVGPVARASGIDTDVRRDHPYAAYG 392
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+LDF++P+ K D R+LVR E +S +IRQ ++ +
Sbjct: 393 DLDFEVPVYKGEDVLSRFLVRYDETFQSFSMIRQALDNMP-------------------- 432
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
E + + G+ + EAP+GE +I+ G NK YR RA
Sbjct: 433 -------EGELINEDYEIPGFKL----GLGVTEAPRGEDVHVVITWGENKVYRWHPRAST 481
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
Y +L A+ + +G+ +AD I+ S+D F D
Sbjct: 482 YNNLPAVPVMLRGNDIADAPIIIASIDPCFSCTD 515
>gi|157148259|ref|YP_001455578.1| hypothetical protein CKO_04076 [Citrobacter koseri ATCC BAA-895]
gi|157085464|gb|ABV15142.1| hypothetical protein CKO_04076 [Citrobacter koseri ATCC BAA-895]
Length = 569
Score = 322 bits (825), Expect = 7e-86, Method: Composition-based stats.
Identities = 100/393 (25%), Positives = 167/393 (42%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI +P R Q+IR + E+ R+ SHLLN+
Sbjct: 236 LSDRVCGICGFAHSTAYTTSVENAMGIVVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ E +
Sbjct: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKEDMIQTRQLAQQMRRE 355
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 356 VQELVDMLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ ++ +I ++ L G GP+ +P + A
Sbjct: 416 PMEVHSEQGCDVISRLKVRINEVYTALNMIDFGLDNLPG----GPLMVEGFTYIPHRFAL 471
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 472 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 504
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 505 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537
>gi|15832831|ref|NP_311604.1| hydrogenase 3 large subunit [Escherichia coli O157:H7 str. Sakai]
gi|26249120|ref|NP_755160.1| formate hydrogenlyase subunit 5 [Escherichia coli CFT073]
gi|82545204|ref|YP_409151.1| large subunit of hydrogenase 3 [Shigella boydii Sb227]
gi|91212081|ref|YP_542067.1| formate hydrogenlyase subunit 5 [Escherichia coli UTI89]
gi|117624953|ref|YP_853941.1| hydrogenase 3, large subunit [Escherichia coli APEC O1]
gi|157158306|ref|YP_001464033.1| formate hydrogenlyase, subunit E [Escherichia coli E24377A]
gi|195938471|ref|ZP_03083853.1| hydrogenase 3, large subunit [Escherichia coli O157:H7 str. EC4024]
gi|208806994|ref|ZP_03249331.1| formate hydrogenlyase, subunit E [Escherichia coli O157:H7 str.
EC4206]
gi|209920160|ref|YP_002294244.1| formate hydrogenlyase subunit [Escherichia coli SE11]
gi|215488037|ref|YP_002330468.1| hydrogenase 3, large subunit [Escherichia coli O127:H6 str.
E2348/69]
gi|218547771|ref|YP_002381562.1| hydrogenase 3, large subunit [Escherichia fergusonii ATCC 35469]
gi|218555265|ref|YP_002388178.1| hydrogenase 3, large subunit [Escherichia coli IAI1]
gi|218559711|ref|YP_002392624.1| hydrogenase 3, large subunit [Escherichia coli S88]
gi|218696315|ref|YP_002403982.1| hydrogenase 3, large subunit [Escherichia coli 55989]
gi|237706656|ref|ZP_04537137.1| formate hydrogenlyase subunit 5 [Escherichia sp. 3_2_53FAA]
gi|254794661|ref|YP_003079498.1| hydrogenase 3, large subunit [Escherichia coli O157:H7 str.
TW14359]
gi|256019500|ref|ZP_05433365.1| formate hydrogenlyase, subunit E [Shigella sp. D9]
gi|260845364|ref|YP_003223142.1| hydrogenase 3, large subunit [Escherichia coli O103:H2 str. 12009]
gi|260856828|ref|YP_003230719.1| hydrogenase 3, large subunit [Escherichia coli O26:H11 str. 11368]
gi|260869396|ref|YP_003235798.1| hydrogenase 3, large subunit [Escherichia coli O111:H- str. 11128]
gi|261226015|ref|ZP_05940296.1| formate hydrogenlyase, subunit E [Escherichia coli O157:H7 str.
FRIK2000]
gi|261256727|ref|ZP_05949260.1| formate hydrogenlyase, subunit E [Escherichia coli O157:H7 str.
FRIK966]
gi|293449037|ref|ZP_06663458.1| hycE [Escherichia coli B088]
gi|306812401|ref|ZP_07446599.1| Formate hydrogenlyase, subunit E [Escherichia coli NC101]
gi|312965021|ref|ZP_07779261.1| formate hydrogenlyase subunit 5 [Escherichia coli 2362-75]
gi|26109527|gb|AAN81730.1|AE016765_132 Formate hydrogenlyase subunit 5 precursor [Escherichia coli CFT073]
gi|13363048|dbj|BAB37000.1| hydrogenase 3 large subunit [Escherichia coli O157:H7 str. Sakai]
gi|81246615|gb|ABB67323.1| large subunit of hydrogenase 3 [Shigella boydii Sb227]
gi|91073655|gb|ABE08536.1| formate hydrogenlyase subunit 5 precursor [Escherichia coli UTI89]
gi|115514077|gb|ABJ02152.1| hydrogenase 3, large subunit [Escherichia coli APEC O1]
gi|157080336|gb|ABV20044.1| formate hydrogenlyase, subunit E [Escherichia coli E24377A]
gi|208726795|gb|EDZ76396.1| formate hydrogenlyase, subunit E [Escherichia coli O157:H7 str.
EC4206]
gi|209761888|gb|ACI79256.1| hydrogenase 3 large subunit [Escherichia coli]
gi|209761890|gb|ACI79257.1| hydrogenase 3 large subunit [Escherichia coli]
gi|209761892|gb|ACI79258.1| hydrogenase 3 large subunit [Escherichia coli]
gi|209761894|gb|ACI79259.1| hydrogenase 3 large subunit [Escherichia coli]
gi|209761896|gb|ACI79260.1| hydrogenase 3 large subunit [Escherichia coli]
gi|209913419|dbj|BAG78493.1| formate hydrogenlyase subunit [Escherichia coli SE11]
gi|215266109|emb|CAS10534.1| hydrogenase 3, large subunit [Escherichia coli O127:H6 str.
E2348/69]
gi|218353047|emb|CAU98872.1| hydrogenase 3, large subunit [Escherichia coli 55989]
gi|218355312|emb|CAQ87919.1| hydrogenase 3, large subunit [Escherichia fergusonii ATCC 35469]
gi|218362033|emb|CAQ99640.1| hydrogenase 3, large subunit [Escherichia coli IAI1]
gi|218366480|emb|CAR04232.1| hydrogenase 3, large subunit [Escherichia coli S88]
gi|222034415|emb|CAP77157.1| Formate hydrogenlyase subunit 5 [Escherichia coli LF82]
gi|226899696|gb|EEH85955.1| formate hydrogenlyase subunit 5 [Escherichia sp. 3_2_53FAA]
gi|254594061|gb|ACT73422.1| hydrogenase 3, large subunit [Escherichia coli O157:H7 str.
TW14359]
gi|257755477|dbj|BAI26979.1| hydrogenase 3, large subunit [Escherichia coli O26:H11 str. 11368]
gi|257760511|dbj|BAI32008.1| hydrogenase 3, large subunit [Escherichia coli O103:H2 str. 12009]
gi|257765752|dbj|BAI37247.1| hydrogenase 3, large subunit [Escherichia coli O111:H- str. 11128]
gi|281179724|dbj|BAI56054.1| formate hydrogenlyase subunit [Escherichia coli SE15]
gi|291322127|gb|EFE61556.1| hycE [Escherichia coli B088]
gi|305854439|gb|EFM54877.1| Formate hydrogenlyase, subunit E [Escherichia coli NC101]
gi|307554696|gb|ADN47471.1| formate hydrogenlyase subunit 5 precursor [Escherichia coli ABU
83972]
gi|307625708|gb|ADN70012.1| Formate hydrogenlyase, subunit E [Escherichia coli UM146]
gi|312290577|gb|EFR18457.1| formate hydrogenlyase subunit 5 [Escherichia coli 2362-75]
gi|312947250|gb|ADR28077.1| formate hydrogenlyase, subunit E [Escherichia coli O83:H1 str. NRG
857C]
gi|320645911|gb|EFX14892.1| Formate hydrogenlyase, subunit E [Escherichia coli O157:H- str.
493-89]
gi|320651211|gb|EFX19646.1| Formate hydrogenlyase, subunit E [Escherichia coli O157:H- str. H
2687]
gi|320656761|gb|EFX24649.1| Formate hydrogenlyase, subunit E [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320662304|gb|EFX29701.1| Formate hydrogenlyase, subunit E [Escherichia coli O55:H7 str. USDA
5905]
gi|320667355|gb|EFX34313.1| Formate hydrogenlyase, subunit E [Escherichia coli O157:H7 str.
LSU-61]
gi|323154937|gb|EFZ41129.1| formate hydrogenlyase subunit 5 [Escherichia coli EPECa14]
gi|323159851|gb|EFZ45822.1| formate hydrogenlyase subunit 5 [Escherichia coli E128010]
gi|323172991|gb|EFZ58622.1| formate hydrogenlyase subunit 5 [Escherichia coli LT-68]
gi|323180142|gb|EFZ65694.1| formate hydrogenlyase subunit 5 [Escherichia coli 1180]
gi|323183248|gb|EFZ68645.1| formate hydrogenlyase subunit 5 [Escherichia coli 1357]
gi|323188865|gb|EFZ74150.1| formate hydrogenlyase subunit 5 [Escherichia coli RN587/1]
gi|332091991|gb|EGI97069.1| formate hydrogenlyase subunit 5 [Shigella boydii 3594-74]
Length = 569
Score = 322 bits (825), Expect = 7e-86, Method: Composition-based stats.
Identities = 97/393 (24%), Positives = 166/393 (42%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ + +
Sbjct: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 355
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 356 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ ++ + ++ L GP+ +P + A
Sbjct: 416 PMEVHSEQGCDVISRLKVRINEVYTALNM----IDYGLDNLPGGPLMVEGFTYIPHRFAL 471
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 472 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 504
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 505 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537
>gi|302870304|ref|YP_003838941.1| NADH dehydrogenase (quinone) [Micromonospora aurantiaca ATCC 27029]
gi|315503419|ref|YP_004082306.1| NADH dehydrogenase (quinone) [Micromonospora sp. L5]
gi|302573163|gb|ADL49365.1| NADH dehydrogenase (quinone) [Micromonospora aurantiaca ATCC 27029]
gi|315410038|gb|ADU08155.1| NADH dehydrogenase (quinone) [Micromonospora sp. L5]
Length = 389
Score = 322 bits (825), Expect = 8e-86, Method: Composition-based stats.
Identities = 132/393 (33%), Positives = 208/393 (52%), Gaps = 27/393 (6%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++ +N GPQHP+ HGVLRL L LDGE V +P +G +HRG EKL E + + Q +
Sbjct: 23 EQLGTDMVLNIGPQHPSTHGVLRLKLVLDGERVVAAEPIVGYMHRGAEKLFEVRDYRQII 82
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
+R D+++ + E LAVE+L+G+E+P R +R+ +E+ R+L+HL+ + + ++
Sbjct: 83 VLANRHDWLSAFSNELGVVLAVERLMGMEVPERATWLRMALAELNRVLNHLMFLGSYPLE 142
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA+TP + F ERE + E SG R+H + R GG+ +++P
Sbjct: 143 IGAITPMFYAFRERETIQAVMEEVSGGRIHYMFNRVGGLKEEVPSGWTGRARAAIAEVRR 202
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ D+ +L+ N IF R V +G + DA +G SG + R SG DLR+ +PY Y +
Sbjct: 203 RMPDLDNLIRRNEIFLARTVGVGVLSAADAAAFGASGPVARASGLDLDLRRDEPYLAYDQ 262
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LD + GDC+ R+ V + ++ S+ + QC++R+ GPV+ PK++
Sbjct: 263 LDVPVVTKTAGDCHARFEVLLDQVYVSLDLAEQCLDRVDR--ISGPVNTRLPKVL----- 315
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
P G YA E P G G YL+S G P+R K+R Y
Sbjct: 316 --------------------KAPEGHTYAWTENPLGINGYYLVSRGEKTPWRMKLRTASY 355
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
A++QA+ L G + D+ AILGS+ V G++D
Sbjct: 356 ANVQALSSLLPGCLVPDLIAILGSMFFVVGDID 388
>gi|323960619|gb|EGB56245.1| respiratory-chain NADH dehydrogenase [Escherichia coli H489]
Length = 576
Score = 321 bits (824), Expect = 8e-86, Method: Composition-based stats.
Identities = 97/393 (24%), Positives = 166/393 (42%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 183 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 242
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 243 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 302
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ + +
Sbjct: 303 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 362
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 363 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 422
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ ++ + ++ L GP+ +P + A
Sbjct: 423 PMEVHSEQGCDVISRLKVRINEVYTALNM----IDYGLDNLPGGPLMVEGFTYIPHRFAL 478
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 479 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 511
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 512 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 544
>gi|284922657|emb|CBG35745.1| formate hydrogenlyase subunit 5 [Escherichia coli 042]
Length = 571
Score = 321 bits (824), Expect = 8e-86, Method: Composition-based stats.
Identities = 97/393 (24%), Positives = 166/393 (42%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 178 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 237
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 238 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 297
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ + +
Sbjct: 298 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 357
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 358 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 417
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ ++ + ++ L GP+ +P + A
Sbjct: 418 PMEVHSEQGCDVISRLKVRINEVYTALNM----IDYGLDNLPGGPLMVEGFTYIPHRFAL 473
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 474 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 506
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 507 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 539
>gi|16130628|ref|NP_417201.1| hydrogenase 3, large subunit [Escherichia coli str. K-12 substr.
MG1655]
gi|89109508|ref|AP_003288.1| hydrogenase 3, large subunit [Escherichia coli str. K-12 substr.
W3110]
gi|157162167|ref|YP_001459485.1| formate hydrogenlyase, subunit E [Escherichia coli HS]
gi|170019033|ref|YP_001723987.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Escherichia coli
ATCC 8739]
gi|170082297|ref|YP_001731617.1| hydrogenase 3, large subunit [Escherichia coli str. K-12 substr.
DH10B]
gi|188493033|ref|ZP_03000303.1| formate hydrogenlyase subunit, E [Escherichia coli 53638]
gi|218701213|ref|YP_002408842.1| hydrogenase 3, large subunit [Escherichia coli IAI39]
gi|238901858|ref|YP_002927654.1| hydrogenase 3, large subunit [Escherichia coli BW2952]
gi|253772424|ref|YP_003035255.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254162652|ref|YP_003045760.1| hydrogenase 3, large subunit [Escherichia coli B str. REL606]
gi|256024772|ref|ZP_05438637.1| formate hydrogenlyase, subunit E [Escherichia sp. 4_1_40B]
gi|293412079|ref|ZP_06654802.1| formate hydrogenlyase subunit 5 [Escherichia coli B354]
gi|307139408|ref|ZP_07498764.1| Formate hydrogenlyase, subunit E [Escherichia coli H736]
gi|312973069|ref|ZP_07787242.1| formate hydrogenlyase subunit 5 [Escherichia coli 1827-70]
gi|123919|sp|P16431|HYCE_ECOLI RecName: Full=Formate hydrogenlyase subunit 5; Short=FHL subunit 5;
AltName: Full=Hydrogenase-3 component E; Flags:
Precursor
gi|41684|emb|CAA35550.1| hycE [Escherichia coli]
gi|882614|gb|AAA69231.1| formate hydrogenlyase subunit 5 [Escherichia coli str. K-12 substr.
MG1655]
gi|1789076|gb|AAC75763.1| hydrogenase 3, large subunit [Escherichia coli str. K-12 substr.
MG1655]
gi|85675542|dbj|BAE76798.1| hydrogenase 3, large subunit [Escherichia coli str. K12 substr.
W3110]
gi|157067847|gb|ABV07102.1| formate hydrogenlyase, subunit E [Escherichia coli HS]
gi|169753961|gb|ACA76660.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Escherichia coli
ATCC 8739]
gi|169890132|gb|ACB03839.1| hydrogenase 3, large subunit [Escherichia coli str. K-12 substr.
DH10B]
gi|188488232|gb|EDU63335.1| formate hydrogenlyase subunit, E [Escherichia coli 53638]
gi|218371199|emb|CAR19030.1| hydrogenase 3, large subunit [Escherichia coli IAI39]
gi|238861456|gb|ACR63454.1| hydrogenase 3, large subunit [Escherichia coli BW2952]
gi|242378278|emb|CAQ33053.1| hydrogenase 3, large subunit, subunit of hydrogenase 3 and formate
hydrogenlyase complex [Escherichia coli BL21(DE3)]
gi|253323468|gb|ACT28070.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253974553|gb|ACT40224.1| hydrogenase 3, large subunit [Escherichia coli B str. REL606]
gi|253978720|gb|ACT44390.1| hydrogenase 3, large subunit [Escherichia coli BL21(DE3)]
gi|260448229|gb|ACX38651.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Escherichia coli
DH1]
gi|291468850|gb|EFF11341.1| formate hydrogenlyase subunit 5 [Escherichia coli B354]
gi|309703080|emb|CBJ02412.1| formate hydrogenlyase subunit 5 [Escherichia coli ETEC H10407]
gi|310333011|gb|EFQ00225.1| formate hydrogenlyase subunit 5 [Escherichia coli 1827-70]
gi|315137328|dbj|BAJ44487.1| formate hydrogenlyase subunit 5 [Escherichia coli DH1]
gi|315615109|gb|EFU95746.1| formate hydrogenlyase subunit 5 [Escherichia coli 3431]
gi|327251444|gb|EGE63130.1| formate hydrogenlyase subunit 5 [Escherichia coli STEC_7v]
gi|332344602|gb|AEE57936.1| formate hydrogenlyase subunit 5 [Escherichia coli UMNK88]
gi|1093498|prf||2104213E hycE gene
Length = 569
Score = 321 bits (824), Expect = 8e-86, Method: Composition-based stats.
Identities = 97/393 (24%), Positives = 166/393 (42%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ + +
Sbjct: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 355
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 356 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ ++ + ++ L GP+ +P + A
Sbjct: 416 PMEVHSEQGCDVISRLKVRINEVYTALNM----IDYGLDNLPGGPLMVEGFTYIPHRFAL 471
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 472 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 504
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 505 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537
>gi|258647046|ref|ZP_05734515.1| NADH dehydrogenase I, C/D subunit [Prevotella tannerae ATCC 51259]
gi|260853161|gb|EEX73030.1| NADH dehydrogenase I, C/D subunit [Prevotella tannerae ATCC 51259]
Length = 558
Score = 321 bits (824), Expect = 8e-86, Method: Composition-based stats.
Identities = 133/390 (34%), Positives = 198/390 (50%), Gaps = 29/390 (7%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+ +N GPQHP+ HGVL + L+GE + ++DP +G +HRG EKL E+ T+ Q + +
Sbjct: 198 DDYVVNIGPQHPSTHGVLHFRVALEGERIRKIDPILGYIHRGIEKLNESLTYPQTLALTE 257
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDY+ M HA + +EK GIE+ R Q IR + E RI SH+L + D+GA
Sbjct: 258 RLDYLGAMQNRHALCMCIEKAAGIEVSERVQYIRTIMDEFQRIDSHILFFSCLCQDMGAT 317
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
+ L+GF +RE+++ +E G R+ Y GGV DI P V + + L +
Sbjct: 318 SAFLYGFRDREQILDIFEETCGGRLILNYNTIGGVMADIHPNFVRRVKEFIPYMRHNLQE 377
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
D+ N I R +G + E +G +G R +G + DLRK QPY Y ++DF
Sbjct: 378 YYDIFVNNVIAHNRLEGVGVLNKEQVISFGCTGGTGRAAGWSNDLRKHQPYAAYDKVDFQ 437
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
GD + R +VRM E+ ES+KII Q ++ + GP I+
Sbjct: 438 EITYTEGDSFARLMVRMKEIEESLKIIEQLIDGI----PEGPFQTKTKPII--------- 484
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+P G Y+AVE +GEFGV L S G P R R+ G +
Sbjct: 485 ----------------KIPAGTYYSAVEGSRGEFGVLLESKGDKFPSRLHYRSTGLPLVA 528
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AM+ +C+ + +AD+ AI G++D V ++DR
Sbjct: 529 AMDTICRDNFIADLMAIGGTVDYVVPDIDR 558
>gi|15803238|ref|NP_289270.1| large subunit of hydrogenase 3 (part of FHL complex) [Escherichia
coli O157:H7 EDL933]
gi|12517169|gb|AAG57828.1|AE005500_7 large subunit of hydrogenase 3 (part of FHL complex) [Escherichia
coli O157:H7 str. EDL933]
Length = 569
Score = 321 bits (824), Expect = 8e-86, Method: Composition-based stats.
Identities = 97/393 (24%), Positives = 166/393 (42%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ + +
Sbjct: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 355
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 356 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ ++ + ++ L GP+ +P + A
Sbjct: 416 PMEVHSEQGCDVISRLKVRINEVYTALNM----IDYGLDNLPGGPLMVEGFTYIPHRFAL 471
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 472 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 504
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 505 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537
>gi|110642844|ref|YP_670574.1| formate hydrogenase-3 component E [Escherichia coli 536]
gi|110344436|gb|ABG70673.1| formate hydrogenase-3 component E [Escherichia coli 536]
Length = 569
Score = 321 bits (824), Expect = 9e-86, Method: Composition-based stats.
Identities = 97/393 (24%), Positives = 166/393 (42%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ + +
Sbjct: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 355
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 356 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ ++ + ++ L GP+ +P + A
Sbjct: 416 PMEVHSEQGCDVISRLKVRINEVYTALNM----IDYGLDNLPGGPLMVEGFTYIPHRFAL 471
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 472 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 504
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 505 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537
>gi|260912211|ref|ZP_05918763.1| proton-translocating NADH-quinone oxidoreductase [Prevotella sp.
oral taxon 472 str. F0295]
gi|260633645|gb|EEX51783.1| proton-translocating NADH-quinone oxidoreductase [Prevotella sp.
oral taxon 472 str. F0295]
Length = 522
Score = 321 bits (824), Expect = 1e-85, Method: Composition-based stats.
Identities = 134/391 (34%), Positives = 206/391 (52%), Gaps = 29/391 (7%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ +N GPQHPA HGVLRL LDGE++ ++ PH+G +HRG EK+ E+ ++ Q + +
Sbjct: 161 DDDYVVNIGPQHPATHGVLRLQTILDGEVIRKIYPHLGYIHRGVEKISESYSYPQTLAFT 220
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DRLDY++ HA +E+ +G+E+ R + IR + E+ R+ SHLL + A DVGA
Sbjct: 221 DRLDYLSATMNRHALVGVIEEAMGVELTDRIKYIRTIMDELQRLNSHLLFYSCCAQDVGA 280
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
LT ++G +RE+++ E +G R+ Y+R GG DI P V+++ C
Sbjct: 281 LTAFIYGMRDREQVINVMEETTGGRLIMNYYRIGGCQADIDPNFVKNVKKLCAYIKPMFK 340
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ D+ TGN I + R +G + EDA +G +G R +G D+RK Y Y ++DF
Sbjct: 341 EYQDVFTGNVIMENRFKGVGMLSREDAISYGCTGGTGRATGWQNDVRKHHSYGVYDKVDF 400
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+GD YDRY+VRM EM +SV I+ ++ + G I+
Sbjct: 401 KEITYNNGDSYDRYMVRMKEMEQSVHILETLIDNI----PEGDFYIKQKPII-------- 448
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
VP G+ Y + E +GE GV+L S G PYR K R G +
Sbjct: 449 -----------------KVPEGQWYFSCEGSRGEIGVFLDSKGDKSPYRLKFRPMGLPLV 491
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A++ + +G ++AD+ A+ SLD V ++DR
Sbjct: 492 SALDTMLRGEKIADLIAVGASLDYVIPDIDR 522
>gi|224026050|ref|ZP_03644416.1| hypothetical protein BACCOPRO_02803 [Bacteroides coprophilus DSM
18228]
gi|224019286|gb|EEF77284.1| hypothetical protein BACCOPRO_02803 [Bacteroides coprophilus DSM
18228]
Length = 540
Score = 321 bits (824), Expect = 1e-85, Method: Composition-based stats.
Identities = 144/390 (36%), Positives = 203/390 (52%), Gaps = 29/390 (7%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+ F +N GPQHP+ HGVLRL L GE + +VDP G +HRG EKL E+ T+ Q + D
Sbjct: 180 QDFVVNIGPQHPSTHGVLRLRTSLKGETISKVDPICGYIHRGIEKLNESLTYPQTLALTD 239
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDY++ HA + +EK GIEI R Q IR + E+ RI SHLL + MD+G L
Sbjct: 240 RLDYLSAHQNRHALCMCIEKAAGIEISERAQYIRTIMDELQRIDSHLLFYSCLVMDMGGL 299
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP +GF ERE ++ +E +G R+ Y GGV D+ P+ + + S + D
Sbjct: 300 TPFFYGFREREMILDIFEETTGGRLIQNYNMIGGVQADLHPDFQRKVKEFIKHLRSVIKD 359
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
D+ TGN I R +G + EDA G +G R SG A D+RK PY Y ++DF
Sbjct: 360 YHDIFTGNVIATTRLKGVGLLSREDAISLGVTGGSGRASGWANDVRKHHPYAVYDKVDFK 419
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ GD + RY+VRM E+ ES II Q ++ + G I+
Sbjct: 420 EILYTEGDSFARYMVRMDEIMESCHIIEQLIDNIPA----GEFRVKTKPII--------- 466
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+P G AAVE+ +GEFGV L S G PYR R+ G +
Sbjct: 467 ----------------KIPEGNYSAAVESSRGEFGVMLESHGDKTPYRLHYRSTGLPLVH 510
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ +CK +++AD+ AI G++D V ++DR
Sbjct: 511 VLDTVCKDNKIADLIAIGGTMDYVIPDIDR 540
>gi|271501145|ref|YP_003334170.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Dickeya dadantii
Ech586]
gi|270344700|gb|ACZ77465.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Dickeya dadantii
Ech586]
Length = 575
Score = 321 bits (824), Expect = 1e-85, Method: Composition-based stats.
Identities = 105/397 (26%), Positives = 169/397 (42%), Gaps = 32/397 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ + + GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 178 INEATGDTRVVPIGPMHITSDEPGHFRLFVDGEQIIDADYRLFYVHRGMEKLAETRMGYN 237
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY ++E LG+ +P R IR + E+ R+ SHLLN+
Sbjct: 238 EVTFLSDRVCGICGFTHSVAYTSSIENALGVIVPARAHTIRSILLEVERLHSHLLNIGLS 297
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
+ VG T + F REK M E +G+R GG+ +DI E
Sbjct: 298 SHFVGFDTGFMQFFRVREKSMQIAEMLTGARKTYGLNLIGGIRRDILKEDRLKTIKLIRE 357
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++D+L G QR IG + + A + G MIR SG D+R P+
Sbjct: 358 MREEVTQLTDMLLGTANMTQRTQGIGVLDRQIARDYSPVGPMIRASGFQRDVRVDHPFSG 417
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y +L ++ GD Y R LVR+ E+ S+ +I ++ + GP+ P
Sbjct: 418 YLDLPMELHHLDGGDVYSRVLVRVREVFTSLAMIEFGLDNM----PEGPILNEHINYQPH 473
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
K A EAP+GE + ++ K +R + RA
Sbjct: 474 KFAL---------------------------GFTEAPRGEDIHWSMTGDNQKLFRWRCRA 506
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YA+ + F+ +G+ ++D I+GSLD + DR
Sbjct: 507 ATYANWPVLRFMLRGNTISDAPLIIGSLDPCYSCTDR 543
>gi|237729676|ref|ZP_04560157.1| hydrogenase 3 large subunit [Citrobacter sp. 30_2]
gi|226908282|gb|EEH94200.1| hydrogenase 3 large subunit [Citrobacter sp. 30_2]
Length = 569
Score = 321 bits (824), Expect = 1e-85, Method: Composition-based stats.
Identities = 100/393 (25%), Positives = 167/393 (42%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI +P R Q+IR + E+ R+ SHLLN+
Sbjct: 236 LSDRVCGICGFAHSTAYTTSVENAMGIVVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ E +
Sbjct: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKEDMIQTRQLAQQMRRD 355
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 356 VQELVDMLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ ++ +I ++ L G GP+ +P + A
Sbjct: 416 PMEVHSEQGCDVISRLKVRINEVYTALNMIDFGLDNLPG----GPLMVEGFTYIPHRFAL 471
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 472 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 504
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 505 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537
>gi|302521020|ref|ZP_07273362.1| NADH dehydrogenase (quinone), D subunit [Streptomyces sp. SPB78]
gi|302429915|gb|EFL01731.1| NADH dehydrogenase (quinone), D subunit [Streptomyces sp. SPB78]
Length = 366
Score = 321 bits (824), Expect = 1e-85, Method: Composition-based stats.
Identities = 126/381 (33%), Positives = 196/381 (51%), Gaps = 28/381 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+S +N GPQHP+ HGVLRL L LDGE + +P IG +HRG EKL E + + Q +
Sbjct: 12 AESTDMVLNIGPQHPSTHGVLRLRLVLDGERIVSAEPVIGYMHRGAEKLFEARDYRQIIM 71
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+R D+++ + E +AVE++LG+E+P R +R L +E+ R+L+HL+ + + +++
Sbjct: 72 LANRHDWLSAFSNELGVVMAVERMLGMEVPERAVWLRTLLAELNRVLNHLMFLGSYPLEL 131
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP + F ERE+L E SG RMH + R GG+ +DIP E +
Sbjct: 132 GGITPMFYAFREREELQAVMEEVSGGRMHYMFNRVGGLKEDIPLGWPERVRTALARVRER 191
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ D L+ GN IF+ R ++G + +G SG + R SG +DLR+ +PY Y EL
Sbjct: 192 MPDYDGLILGNEIFRGRTRDVGVLSARAVHAYGVSGPIARASGVDFDLRRDEPYLAYGEL 251
Query: 244 DF--DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ + GDC R+ + + S+ + C++ L + GPV+ PK++
Sbjct: 252 QDVLRVVTREEGDCLARFECLLDQTHNSLDLAEACLDHL-AELPPGPVNQRLPKVL---- 306
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
P G YA E P G G YL+S G PYR K+R+
Sbjct: 307 ---------------------KAPEGHTYAWTENPLGLNGYYLVSKGEKTPYRLKLRSAS 345
Query: 362 YAHLQAMEFLCKGHQLADVSA 382
+ ++QA+ L G +AD+ A
Sbjct: 346 FNNIQALTELLPGTLVADMVA 366
>gi|300919243|ref|ZP_07135766.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
115-1]
gi|300413688|gb|EFJ96998.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
115-1]
Length = 576
Score = 321 bits (824), Expect = 1e-85, Method: Composition-based stats.
Identities = 97/393 (24%), Positives = 165/393 (41%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 183 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 242
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 243 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 302
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G R GG+ +D+ + +
Sbjct: 303 GFDSGFMQFFRVRETSMKMAEILTGVRKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 362
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 363 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 422
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ ++ + ++ L GP+ +P + A
Sbjct: 423 PMEVHSEQGCDVISRLKVRINEVYTALNM----IDYGLDNLPGGPLMVEGFTYIPHRFAL 478
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 479 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 511
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 512 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 544
>gi|320173426|gb|EFW48625.1| Formate hydrogenlyase subunit 5 [Shigella dysenteriae CDC 74-1112]
Length = 572
Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats.
Identities = 97/393 (24%), Positives = 165/393 (41%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 179 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 238
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 239 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 298
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + F RE M E +G+R GG+ +D+ + +
Sbjct: 299 GFDYGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTHQLAQQMRRE 358
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 359 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 418
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ ++ + ++ L GP+ +P + A
Sbjct: 419 PMEVHSEQGCDVISRLKVRINEVYTALNM----IDYGLDNLPGGPLMVEGFTYIPHRFAL 474
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 475 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 507
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 508 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 540
>gi|325269276|ref|ZP_08135894.1| NADH-quinone oxidoreductase subunit C/D [Prevotella multiformis DSM
16608]
gi|324988403|gb|EGC20368.1| NADH-quinone oxidoreductase subunit C/D [Prevotella multiformis DSM
16608]
Length = 524
Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats.
Identities = 135/391 (34%), Positives = 199/391 (50%), Gaps = 29/391 (7%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+F +N GPQHP+ HGVLRL LDGE V ++ PH+G +HRG EKL E T+ Q +
Sbjct: 163 DDNFVVNIGPQHPSTHGVLRLQTVLDGETVVKIYPHLGYIHRGIEKLCEQFTYPQTLALT 222
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DR++Y++ M HA +E+ +GIE+ R + +R + E+ RI +HLL A D+GA
Sbjct: 223 DRMNYLSAMMNRHALVGVIEEGMGIELSDRIKYVRTIMDELQRIDNHLLYTACCAQDLGA 282
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
LT L+G +RE ++ E +G R+ Y+R GG+ DI P V ++ C +
Sbjct: 283 LTAFLYGMRDREHVLNVMEETTGGRLIQNYYRIGGLQADIDPHFVSNVKELCRYLRPMVQ 342
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ D+ N I QR NIG + +D +G +G R SG D+RK+ PY Y ++DF
Sbjct: 343 EYLDVFGDNVITHQRFRNIGFMSEQDCISYGVTGPAGRASGWKNDVRKNHPYAMYDKVDF 402
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ HGD DRY + E+ +S+ II Q V+ + G I+
Sbjct: 403 EQVTLSHGDSMDRYYCHIQEIYQSLNIIEQLVDNI----PEGDFYIKQKPII-------- 450
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
VP G+ Y +VE GEFG YL S G YR K R G + +
Sbjct: 451 -----------------KVPEGQWYFSVEGASGEFGAYLDSRGDKTAYRLKFRPMGLSLV 493
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AM+ + G ++AD+ +LD V ++DR
Sbjct: 494 GAMDKMLCGEKIADLVTTGAALDFVIPDIDR 524
>gi|300922239|ref|ZP_07138365.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
182-1]
gi|300421369|gb|EFK04680.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
182-1]
Length = 576
Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats.
Identities = 97/393 (24%), Positives = 166/393 (42%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 183 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 242
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 243 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 302
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ + +
Sbjct: 303 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQPRQLAQQMRRE 362
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 363 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 422
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ ++ + ++ L GP+ +P + A
Sbjct: 423 PMEVHSEQGCDVISRLKVRINEVYTALNM----IDYGLDNLPGGPLMVEGFTYIPHRFAL 478
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 479 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 511
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 512 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 544
>gi|262043975|ref|ZP_06017059.1| hydrogenase-4 component G [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259038701|gb|EEW39888.1| hydrogenase-4 component G [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 569
Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats.
Identities = 100/391 (25%), Positives = 167/391 (42%), Gaps = 32/391 (8%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVPYF 65
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 178 KNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLS 237
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DR+ + AY +VE +GI +P R Q+IR + E+ R+ SHLLN+ G
Sbjct: 238 DRVCGICGFAHSTAYTTSVENAMGIVVPERAQMIRAILLEVERLQSHLLNLGLACHFTGF 297
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ + F RE M E +G+R GG+ +D+ E + +
Sbjct: 298 DSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKEDMIQTRQLAQQMRRDVQ 357
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 358 ELVDMLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPM 417
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
++ + D R VR+ E+ ++ +I ++ L G GP+ +P + A
Sbjct: 418 EVHSEQGCDVISRLKVRINEVYTALNMIDFGLDNLPG----GPLMVEGFTYIPHRFAL-- 471
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
EAP+G+ + ++ K YR + RA YA+
Sbjct: 472 -------------------------GFSEAPRGDDIHWSMTGDNQKLYRWRCRAATYANW 506
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ ++ +G+ ++D I+GSLD + DR
Sbjct: 507 PTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537
>gi|254173187|ref|ZP_04879860.1| Ni,Fe-hydrogenase III large subunit [Thermococcus sp. AM4]
gi|214032596|gb|EEB73425.1| Ni,Fe-hydrogenase III large subunit [Thermococcus sp. AM4]
Length = 599
Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats.
Identities = 114/400 (28%), Positives = 175/400 (43%), Gaps = 35/400 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETK-TFL 59
+K + + GP H L + GE + VD HRG EK E + T+
Sbjct: 201 FKEKPEGTTLVPMGPVHMGIEEPAHFRLFVKGEEIVDVDYRGFYSHRGIEKTGEGRLTYN 260
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
Q + +R+ + +YA+AVE+L +EIP R + IR L E+ RI +HLL V
Sbjct: 261 QVLFLAERICGICGYQHSVSYAMAVERLADVEIPDRARYIRTLMLELERIHNHLLWVGIA 320
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
A VG T + + RE +M ER +G+R GGV +DI E+I
Sbjct: 321 AHLVGYDTGFMHAWRIREPVMWLVERLTGNRKQYGMNIVGGVRRDILDYRKEEILKVVKQ 380
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYE- 238
D+ F +R +G + + A + G R SG D R Q +
Sbjct: 381 IREETKKFLDIALNTNTFIKRAEGVGILPYKVAKAYSVLGPTARASGRKIDTRLDQATKT 440
Query: 239 --CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKI 296
Y+E+DF +P+ K GD R LVRM E+ ES+ I+ Q ++++ G + + P+
Sbjct: 441 AMAYNEVDFKVPVYKEGDVLARVLVRMDELFESLWIVEQLIDQMPGGDIMVPIGD----- 495
Query: 297 VPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCK 356
P+ E EA +GE Y+++ NK YR K
Sbjct: 496 -LPEYE-------------------------EALGFTEAHRGEVVHYVMTGEKNKVYRWK 529
Query: 357 IRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+RAP Y +L A+ + KG+ +AD I+ S+D + +R
Sbjct: 530 VRAPTYNNLPAVPEMLKGYHVADAPLIIASIDPCYSCTER 569
>gi|191166762|ref|ZP_03028588.1| formate hydrogenlyase, subunit E [Escherichia coli B7A]
gi|309795181|ref|ZP_07689600.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
145-7]
gi|190903133|gb|EDV62856.1| formate hydrogenlyase, subunit E [Escherichia coli B7A]
gi|308121152|gb|EFO58414.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
145-7]
Length = 576
Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats.
Identities = 96/393 (24%), Positives = 165/393 (41%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 183 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 242
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 243 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 302
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ + +
Sbjct: 303 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 362
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L + R V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 363 VQELVDVLLSTPNMEHRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 422
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ ++ + ++ L GP+ +P + A
Sbjct: 423 PMEVHSEQGCDVISRLKVRINEVYTALNM----IDYGLDNLPGGPLMVEGFTYIPHRFAL 478
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 479 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 511
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 512 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 544
>gi|331648439|ref|ZP_08349527.1| formate hydrogenlyase subunit 5 (FHL subunit 5)(Hydrogenase-3
component E) [Escherichia coli M605]
gi|330908752|gb|EGH37266.1| formate hydrogenlyase subunit 5 [Escherichia coli AA86]
gi|331042186|gb|EGI14328.1| formate hydrogenlyase subunit 5 (FHL subunit 5)(Hydrogenase-3
component E) [Escherichia coli M605]
Length = 576
Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats.
Identities = 96/393 (24%), Positives = 166/393 (42%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 183 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 242
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY ++E +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 243 LSDRVCGICGFAHSTAYTTSMENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 302
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ + +
Sbjct: 303 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 362
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 363 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 422
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ ++ + ++ L GP+ +P + A
Sbjct: 423 PMEVHSEQGCDVISRLKVRINEVYTALNM----IDYGLDNLPGGPLMVEGFTYIPHRFAL 478
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 479 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 511
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 512 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 544
>gi|300921419|ref|ZP_07137779.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
115-1]
gi|300411653|gb|EFJ94963.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
115-1]
Length = 489
Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats.
Identities = 107/398 (26%), Positives = 170/398 (42%), Gaps = 34/398 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I P H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 92 INEGDSDARVIPISPLHITSDEPGHFRLFVDGEHIVDADYRLFYVHRGMEKLAETRMGYN 151
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 152 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 211
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
V T + F REK M E +GSR GGV +DI E
Sbjct: 212 CHFVDFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 271
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A + G +IRGSG A DLR PY
Sbjct: 272 MRADVSELVEMLLATPNMEQRTHGIGILDRQIARDYSPVGPLIRGSGFARDLRFDHPYAD 331
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 332 YGNIPKTLFTFTGGDVFSRGMVRVKETFDSLAMLEFALDNMPDTP--------------- 376
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 377 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 419
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 420 AATYANWPVLRYMLRGNIVSDAPLIIGSLDPCYSCTDR 457
>gi|284166440|ref|YP_003404719.1| NADH-ubiquinone oxidoreductase chain 49kDa [Haloterrigena
turkmenica DSM 5511]
gi|284016095|gb|ADB62046.1| NADH-ubiquinone oxidoreductase chain 49kDa [Haloterrigena
turkmenica DSM 5511]
Length = 561
Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats.
Identities = 150/401 (37%), Positives = 213/401 (53%), Gaps = 31/401 (7%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFL-QA 61
+ ++ + +N GP HPA HGVL L LDGE V VDP IG LHR E++ + T+ Q
Sbjct: 185 EAETDTMFLNIGPHHPATHGVLHLETVLDGETVVDVDPDIGYLHRCEEQMCQNGTYRHQI 244
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+PY DR DY A + E A A A+E + IE+P Q++R + E GR+L H L V+T A+
Sbjct: 245 IPYADRWDYTANLPNEWAVARAIEDIADIEVPEYAQVLRTMSVEFGRMLGHFLAVSTFAL 304
Query: 122 DVG--ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP---ELVEDIGCW 176
DV +G +RE + E +G RM +FR GGV D+P E +E +
Sbjct: 305 DVYGDFTAIFQYGMRDREVVQDILEDLTGQRMMFYFFRLGGVAWDLPEPREEWIEKCRDF 364
Query: 177 CDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQP 236
D P+ +++ + LLTGN IF+ R +N G ++ E A +G +G + RGSG +D+R+ P
Sbjct: 365 LDELPAKVDEYNRLLTGNEIFQVRTMNTGVLEPEVAKSYGCTGPVARGSGIDYDVRRDDP 424
Query: 237 YECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKI 296
Y Y L++D+ D + R LVR+ E+ ES KII QC++
Sbjct: 425 YGYYENLEWDVVTEPGCDNHARVLVRLREVEESAKIIEQCLD------------------ 466
Query: 297 VPPKRADMKRSMESLIHHFKLYTEGYHVPVG-EVYAAVEAPKGEFGVYLISDGGNKPYRC 355
++ E G E Y AVE KGE GVY+ +DG N P R
Sbjct: 467 ------LIENWPEDERIVQSNVPRTLKPDPGTETYRAVEIAKGELGVYIRADGSNSPARF 520
Query: 356 KIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
KIR+P + +L A+ + +G +AD+ A LGSLDIV G VDR
Sbjct: 521 KIRSPCFHNLSALPEMAEGEYVADLIASLGSLDIVLGSVDR 561
>gi|238921132|ref|YP_002934647.1| hydrogenase-4 component G [Edwardsiella ictaluri 93-146]
gi|238870701|gb|ACR70412.1| hydrogenase-4 component G [Edwardsiella ictaluri 93-146]
Length = 566
Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats.
Identities = 104/389 (26%), Positives = 165/389 (42%), Gaps = 34/389 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVPYFDRL 68
+ GP H + L +DGE + D + +HRG EKL ET+ + + DR+
Sbjct: 178 IVPIGPLHITSDEPGHFRLFVDGEDIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 237
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+ AY +VE LGI++P R Q IR + E+ R+ SHLLN+ VG +
Sbjct: 238 CGICGFAHSTAYTSSVENALGIQVPQRAQAIRSILLEVERLHSHLLNLGLSCHFVGFDSG 297
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
+ F REK M E +GSR GG+ +D+ E + + + +
Sbjct: 298 FMQFFRVREKSMKMAEILTGSRKTYGLNLIGGIRRDMLKEDMIATRRLAAEMRAEVKTLV 357
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
D+L +QR V IG + + A + G M+R SG A D R P+ Y L +
Sbjct: 358 DILFSTPNIEQRTVGIGRLDPQIARDFSNVGPMVRASGHARDTRADHPFAGYDLLPMQVH 417
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
+ D R VR+ E+ ++ +I ++ L G
Sbjct: 418 SEQGCDVISRVKVRINEVFTALNMIEFGLDNLPGGP------------------------ 453
Query: 309 ESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
L EG+ VP EAP+G+ + ++ K YR + RA YA+
Sbjct: 454 --------LAVEGFTYVPQRFALGFTEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPT 505
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ ++ +G+ ++D I+GSLD + DR
Sbjct: 506 LRYMLRGNTVSDAPLIIGSLDPCYSCTDR 534
>gi|152971580|ref|YP_001336689.1| hydrogenase 3, large subunit (part of FHL complex) [Klebsiella
pneumoniae subsp. pneumoniae MGH 78578]
gi|206581032|ref|YP_002236933.1| formate hydrogenlyase, subunit E [Klebsiella pneumoniae 342]
gi|288933889|ref|YP_003437948.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Klebsiella
variicola At-22]
gi|290511030|ref|ZP_06550399.1| hydrogenase 3, large subunit hycE [Klebsiella sp. 1_1_55]
gi|94468066|gb|ABF20065.1| Ech hydrogenase large subunit [Klebsiella pneumoniae]
gi|150956429|gb|ABR78459.1| hydrogenase 3, large subunit (part of FHL complex) [Klebsiella
pneumoniae subsp. pneumoniae MGH 78578]
gi|206570090|gb|ACI11866.1| formate hydrogenlyase, subunit E [Klebsiella pneumoniae 342]
gi|288888618|gb|ADC56936.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Klebsiella
variicola At-22]
gi|289776023|gb|EFD84022.1| hydrogenase 3, large subunit hycE [Klebsiella sp. 1_1_55]
Length = 569
Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats.
Identities = 100/391 (25%), Positives = 167/391 (42%), Gaps = 32/391 (8%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVPYF 65
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 178 KNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLS 237
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DR+ + AY +VE +GI +P R Q+IR + E+ R+ SHLLN+ G
Sbjct: 238 DRVCGICGFAHSTAYTTSVENAMGIVVPERAQMIRAILLEVERLHSHLLNLGLACHFTGF 297
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ + F RE M E +G+R GG+ +D+ E + +
Sbjct: 298 DSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKEDMIQTRQLAQQMRRDVQ 357
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 358 ELVDMLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPM 417
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
++ + D R VR+ E+ ++ +I ++ L G GP+ +P + A
Sbjct: 418 EVHSEQGCDVISRLKVRINEVYTALNMIDFGLDNLPG----GPLMVEGFTYIPHRFAL-- 471
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
EAP+G+ + ++ K YR + RA YA+
Sbjct: 472 -------------------------GFSEAPRGDDIHWSMTGDNQKLYRWRCRAATYANW 506
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ ++ +G+ ++D I+GSLD + DR
Sbjct: 507 PTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537
>gi|90426041|ref|YP_534411.1| NADH dehydrogenase (ubiquinone), 30 kDa subunit [Rhodopseudomonas
palustris BisB18]
gi|90108055|gb|ABD90092.1| NADH dehydrogenase (ubiquinone), 30 kDa subunit [Rhodopseudomonas
palustris BisB18]
Length = 571
Score = 321 bits (822), Expect = 1e-85, Method: Composition-based stats.
Identities = 104/396 (26%), Positives = 163/396 (41%), Gaps = 32/396 (8%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQ 60
+ + + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 175 NDAAGETTVVPLGPLHITSDEPGHFRLFVDGEDIVDADYRMFYVHRGMEKLAETRMGYNE 234
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
DR+ + AYA +VE LGI +P R Q IR L E R+ SH+LN+
Sbjct: 235 VTFLADRVCGICGYAHSVAYANSVENALGIIVPQRAQAIRSLLLETERLHSHMLNLGLVC 294
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
VG + + F REK M E +G+R A GGV +DI E
Sbjct: 295 HFVGFDSGFMQFFRVREKAMTLAEMLTGARKTYAINLIGGVRRDILGEQRTRTLQLVGEL 354
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ + ++L F R +G + + A + G ++RGSG D R + Y
Sbjct: 355 REEVQRLLEMLLATPNFGPRVAGVGLLDRKIARDYSPVGPLVRGSGFKRDTRVDHAFAGY 414
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+ + G D R +VR E+ +S+ +I Q + GP+ D P
Sbjct: 415 KNVKLGVHTGDGCDVLSRTMVRAAEIFDSLSLIEQLLE----GTPEGPIINEDFTYKP-- 468
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
H F L EAP+GE + ++ K YR + RA
Sbjct: 469 ------------HQFAL-------------GFTEAPRGEDIHWSMTGDNQKLYRWRCRAS 503
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YA+ + ++ +G+ ++D I+GS+D + DR
Sbjct: 504 TYANWPVLRYMLRGNTVSDAPLIVGSIDPCYSCTDR 539
>gi|126465958|ref|YP_001041067.1| NADH dehydrogenase (ubiquinone), 30 kDa subunit [Staphylothermus
marinus F1]
gi|126014781|gb|ABN70159.1| NADH dehydrogenase (ubiquinone), 30 kDa subunit [Staphylothermus
marinus F1]
Length = 548
Score = 321 bits (822), Expect = 1e-85, Method: Composition-based stats.
Identities = 113/389 (29%), Positives = 176/389 (45%), Gaps = 36/389 (9%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIE--TKTFLQAVPYFDRL 68
I GP HPA H L ++GE V V+ + +HRG EKL E + + +R+
Sbjct: 169 IPIGPYHPALHEPEYFELYVEGEKVVDVEYNGFHVHRGIEKLAEAPRFNYQKIPFLAERI 228
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+ +Y ++VE+ I++P R + IR + EI R+ SHLL + +G
Sbjct: 229 CGICGFVHSVSYTMSVERAAKIDVPERAEYIRSIILEIERLHSHLLWIGVVCHLLGYDAG 288
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
+ + REK+MV E +GSR GGV +DI + +E + + S +S
Sbjct: 289 FMHTWRIREKVMVLAELLTGSRKTYGINLVGGVRKDINMDKIEAVKNTIEYIRSEFKHLS 348
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
DL+T +R G + +DA G + RGSG D+R+ PY Y ++ F +P
Sbjct: 349 DLITSISQIVKRASGTGILSRDDARKLSVVGPVARGSGLDRDVRRDYPYAAYRDVYFKVP 408
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
+ GD R LVR+ E+ ES+ I+ Q +++L G M +
Sbjct: 409 VYNEGDNLARLLVRIDEVFESIYILEQLIDKLPGGP------------------IMAEKL 450
Query: 309 ESLIHHFKLYTEGYHVPVG-EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
E VP G VEAP+GE + G +PYR ++RAP Y ++ A
Sbjct: 451 E--------------VPEGVIGIGNVEAPRGEVIH-VTITGHGRPYRWRVRAPTYQNIPA 495
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ + + LAD + S+D F DR
Sbjct: 496 LKIMLRDAPLADAPLTIASIDPCFSCTDR 524
>gi|322831878|ref|YP_004211905.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Rahnella sp. Y9602]
gi|321167079|gb|ADW72778.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Rahnella sp. Y9602]
Length = 574
Score = 321 bits (822), Expect = 1e-85, Method: Composition-based stats.
Identities = 104/397 (26%), Positives = 177/397 (44%), Gaps = 32/397 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+ + K S + GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 178 ISEAKEGSKIVPIGPLHVTSDEPGHFRLFVDGEDIIDADYRLFYVHRGMEKLAETRMGYN 237
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE +GI +P R Q+IR + E+ R+ SHLLN+
Sbjct: 238 EVTFLSDRVCGICGFTHSVAYTSSVENAMGIVVPERAQMIRSILLEVERLHSHLLNLGLA 297
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG + + F RE+ M E +G+R GG+ +DI + + S
Sbjct: 298 CHFVGFDSGFMQFFRVREQSMKMAEILTGARKTYGMNLIGGIRRDILKDDMIATIALAGS 357
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
LN++ D+L +QR+V +G + + A + G M+RGSG D+R+ PY
Sbjct: 358 MRRDLNELVDILLSTPNTRQRSVGVGILDPQVARDFSNVGPMVRGSGHRRDMRQDHPYAG 417
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y++L F++ D Y R VR+ E+ ++ + + L GP++ +P
Sbjct: 418 YAKLPFELCSETGNDVYSRLKVRIHEVFNALNM----IEFGLQSLPGGPLAVEGFNYIPH 473
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
+ A EAP+G+ + ++ K +R + RA
Sbjct: 474 RFAL---------------------------GFAEAPRGDDIHWSMTGDNQKLFRWRCRA 506
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 507 ATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 543
>gi|322369188|ref|ZP_08043753.1| NADH dehydrogenase-like complex subunit CD [Haladaptatus
paucihalophilus DX253]
gi|320550920|gb|EFW92569.1| NADH dehydrogenase-like complex subunit CD [Haladaptatus
paucihalophilus DX253]
Length = 551
Score = 321 bits (822), Expect = 1e-85, Method: Composition-based stats.
Identities = 148/402 (36%), Positives = 211/402 (52%), Gaps = 32/402 (7%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFL-QA 61
S + +N GP HPA HGVL L LDGE V VDP IG LHR E++ + T+ Q
Sbjct: 174 DADSDTMFLNIGPHHPATHGVLHLKTTLDGEQVADVDPDIGYLHRCEEQMAQNGTYRHQI 233
Query: 62 VPYFDRLDYVAP-MNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY DR DY + + E AYA E L +++P Q+IR + +E+ RI SH+L + T
Sbjct: 234 MPYPDRWDYASAGLLNEWAYARVAEDLNDLDVPEYAQIIRTMGAELCRIASHMLALGTFC 293
Query: 121 MDVG--ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP---ELVEDIGC 175
+D+ ++ +RE + E +G RM YFR GGV DIP + + I
Sbjct: 294 LDIYGDFTAIFMYAMRDREIVQNILEDLTGQRMMFNYFRLGGVVWDIPEPRQDFFDKIRD 353
Query: 176 WCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQ 235
+ D P L + DL+T N +F+ R + G ++ E A +G +G + R SG +DLR+
Sbjct: 354 FLDDLPPTLEEYHDLITSNELFQIRTIGTGVLEPEVAKQYGVTGPVARASGIDYDLRRDD 413
Query: 236 PYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNK-VGPVSASDP 294
PY Y +LD+D+ D Y R LVRM E+ ES KII QCV+ L + + ++ P
Sbjct: 414 PYGYYDQLDWDVVTEDGCDNYARLLVRMREVEESAKIIDQCVDLLEDWPEDEREIQSNVP 473
Query: 295 KIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYR 354
+ + P E Y AVE KGE G+Y+ SDG +KP R
Sbjct: 474 RTLKPDADT------------------------ETYRAVEGAKGELGIYIRSDGTDKPGR 509
Query: 355 CKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
KIR+P + +L A+ + G + D+ A LGSLD++ GEVDR
Sbjct: 510 FKIRSPCFCNLSALGEMSNGEYIPDLVATLGSLDVILGEVDR 551
>gi|238749931|ref|ZP_04611435.1| Formate hydrogenlyase subunit 5 [Yersinia rohdei ATCC 43380]
gi|238711860|gb|EEQ04074.1| Formate hydrogenlyase subunit 5 [Yersinia rohdei ATCC 43380]
Length = 598
Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats.
Identities = 106/396 (26%), Positives = 170/396 (42%), Gaps = 32/396 (8%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQ 60
++ S S + GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 202 NEAGSSSRVVPIGPMHITSDEPGHFRLFVDGEDIIDADYRLFYVHRGMEKLAETRMGYND 261
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
DR+ + AY ++E LGI +P R Q+IR + E+ R+ SHLLN+
Sbjct: 262 VTFLSDRICGICGFTHSVAYTSSIENALGIIVPPRAQMIRTILLEVERLHSHLLNIGLSC 321
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
VG T + F REK M E +G+R GGV +DI
Sbjct: 322 HFVGFDTGFMQFFRVREKAMTIAELLTGARKTYGLNLIGGVRRDILKADRLKTLQLVAEM 381
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ + ++ D+L +QR V +G + + A + G MIR SG A D+R PY Y
Sbjct: 382 RADIGELVDMLMSTANIEQRTVGVGLLDRKIARDFSPVGPMIRASGFARDMRHDHPYANY 441
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+ + ++ D + R LVR+ E +S+ +I +N + G
Sbjct: 442 ANVPKELFSLDGCDVHSRLLVRVREFFDSLVMIEYGLNHMPGGP---------------- 485
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+E IH+ EAP+GE + ++ K +R + RA
Sbjct: 486 ------LLEEKIHYQPYKF---------ALGFSEAPRGEDVHWSMTGDNQKLFRWRCRAA 530
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 531 TYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 566
>gi|320640364|gb|EFX09903.1| Formate hydrogenlyase, subunit E [Escherichia coli O157:H7 str.
G5101]
Length = 569
Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats.
Identities = 97/393 (24%), Positives = 166/393 (42%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRMFYVHRGMEKLAETRMGYNEVTF 235
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ + +
Sbjct: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 355
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 356 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ ++ + ++ L GP+ +P + A
Sbjct: 416 PMEVHSEQGCDVISRLKVRINEVYTALNM----IDYGLDNLPGGPLMVEGFTYIPHRFAL 471
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 472 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 504
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 505 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537
>gi|307312856|ref|ZP_07592486.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Escherichia coli W]
gi|306907291|gb|EFN37797.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Escherichia coli W]
gi|315061997|gb|ADT76324.1| hydrogenase 3, large subunit [Escherichia coli W]
gi|323377420|gb|ADX49688.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Escherichia coli
KO11]
Length = 569
Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats.
Identities = 97/393 (24%), Positives = 165/393 (41%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ + +
Sbjct: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 355
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 356 VQELVDGLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ ++ + ++ L GP+ +P + A
Sbjct: 416 PMEVHSEQGCDVISRLKVRINEVYTALNM----IDYGLDNLPGGPLMVEGFTYIPHRFAL 471
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 472 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 504
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 505 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537
>gi|123443019|ref|YP_001006994.1| hydrogenase-4 component G [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122089980|emb|CAL12837.1| hydrogenase-4 component G [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 601
Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats.
Identities = 107/396 (27%), Positives = 172/396 (43%), Gaps = 32/396 (8%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQ 60
++ S S + GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 205 NEAGSSSRVVPIGPMHITSDEPGHFRLFVDGEDIIDADYRLFYVHRGMEKLAETRMGYND 264
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
DR+ + AY ++E LGI +P R Q+IR + E+ R+ SHLLN+
Sbjct: 265 VTFLSDRICGICGFTHSVAYTSSIENALGIIVPPRAQMIRTILLEVERLHSHLLNIGLSC 324
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
VG T + F REK M E +G+R GGV +DI
Sbjct: 325 HFVGFDTGFMQFFRVREKAMTIAEMLTGARKTYGLNLIGGVRRDILKADRIKTLQLVSEM 384
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ ++++ D+L +QR + +G + + A + G MIR SG A D+R PY Y
Sbjct: 385 RADISELVDMLMSTANIEQRTMGVGMLDRKIARDFSPVGPMIRASGYARDMRHDHPYANY 444
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+ + ++ D + R LVR+ E +S+ +I +N + G GP+ P K
Sbjct: 445 ANIPKELFSLDGCDVHSRLLVRVREFFDSLVMIEYGLNHMPG----GPLLEEKVHYQPYK 500
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
A EAP+GE + ++ K +R + RA
Sbjct: 501 FAL---------------------------GFSEAPRGEDVHWSMTGDNQKLFRWRCRAA 533
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 534 TYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 569
>gi|148791382|gb|ABR12482.1| hydrogenase 3 large subunit [Klebsiella oxytoca]
Length = 569
Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats.
Identities = 99/398 (24%), Positives = 170/398 (42%), Gaps = 33/398 (8%)
Query: 1 MDKKKSR-SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-F 58
+++ ++ + + GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 171 INELGTKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGY 230
Query: 59 LQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTT 118
+ DR+ + AY +VE +GI +P R Q+IR + E+ R+ SHLLN+
Sbjct: 231 NEVTFLSDRVCGICGFAHSTAYTTSVENAMGIVVPERAQMIRAILLEVERLHSHLLNLGL 290
Query: 119 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
G + + F RE M E +G+R GG+ +D+ E +
Sbjct: 291 ACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKEDMIQTRQLAQ 350
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
+ ++ D+L +QR V IG + + A + G M+R SG A D R P+
Sbjct: 351 QMRRDVQELVDMLLSTPNMEQRTVGIGRLDPQIARDFSNVGPMVRASGHARDTRADHPFV 410
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
Y L + + D R VR+ E+ ++ +I ++ L G GP+ +P
Sbjct: 411 GYGLLPMTVHSEQGCDVISRLKVRINEVYTALNMIDFGLDNLPG----GPLMVEGFTYIP 466
Query: 299 PKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
+ A EAP+G+ + ++ K YR + R
Sbjct: 467 HRFAL---------------------------GFSEAPRGDDIHWSMTGDNQKLYRWRCR 499
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 500 AATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537
>gi|187733129|ref|YP_001881532.1| formate hydrogenlyase subunit E [Shigella boydii CDC 3083-94]
gi|187430121|gb|ACD09395.1| formate hydrogenlyase, subunit E [Shigella boydii CDC 3083-94]
Length = 569
Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats.
Identities = 96/393 (24%), Positives = 166/393 (42%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ + +
Sbjct: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 355
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR + IG + E A + G M+R SG A D R P+ Y L
Sbjct: 356 VQELVDVLLSTPNMEQRTIGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ ++ + ++ L GP+ +P + A
Sbjct: 416 PMEVHSEQGCDVISRLKVRINEVYTALNM----IDYGLDNLPGGPLMVEGFTYIPHRFAL 471
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 472 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 504
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 505 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537
>gi|269140238|ref|YP_003296939.1| hydrogenase 3 large subunit [Edwardsiella tarda EIB202]
gi|267985899|gb|ACY85728.1| hydrogenase 3 large subunit [Edwardsiella tarda EIB202]
gi|304560068|gb|ADM42732.1| Formate hydrogenlyase subunit 5 [Edwardsiella tarda FL6-60]
Length = 566
Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats.
Identities = 104/389 (26%), Positives = 165/389 (42%), Gaps = 34/389 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVPYFDRL 68
+ GP H + L +DGE + D + +HRG EKL ET+ + + DR+
Sbjct: 178 IVPIGPLHITSDEPGHFRLFVDGEDIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 237
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+ AY +VE LGI++P R Q IR + E+ R+ SHLLN+ VG +
Sbjct: 238 CGICGFAHSTAYTSSVENALGIQVPQRAQAIRSILLEVERLHSHLLNLGLSCHFVGFDSG 297
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
+ F REK M E +GSR GG+ +D+ E + + + +
Sbjct: 298 FMQFFRVREKSMKMAEILTGSRKTYGLNLIGGIRRDMLKEDMIATRRLAAEMRAEVKTLV 357
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
D+L +QR V IG + + A + G M+R SG A D R P+ Y L +
Sbjct: 358 DILFSTPNIEQRTVGIGRLDPQIARDFSNVGPMVRASGHARDTRADHPFAGYDLLPMQVH 417
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
+ D R VR+ E+ ++ +I ++ L G
Sbjct: 418 SEQGCDVISRVKVRINEVFTALNMIEFGLDNLPGGP------------------------ 453
Query: 309 ESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
L EG+ VP EAP+G+ + ++ K YR + RA YA+
Sbjct: 454 --------LAVEGFTYVPQRFALGFTEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPT 505
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ ++ +G+ ++D I+GSLD + DR
Sbjct: 506 LRYMLRGNTVSDAPLIIGSLDPCYSCTDR 534
>gi|238896178|ref|YP_002920914.1| hydrogenase 3 large subunit [Klebsiella pneumoniae NTUH-K2044]
gi|238548496|dbj|BAH64847.1| hydrogenase 3 large subunit [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
Length = 569
Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats.
Identities = 100/391 (25%), Positives = 166/391 (42%), Gaps = 32/391 (8%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVPYF 65
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 178 KNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLS 237
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DR+ + AY +VE +GI +P R Q+IR + E+ R+ SHLLN+ G
Sbjct: 238 DRVCGICGFAHSTAYTTSVENAMGIVVPERAQMIRAILLEVERLHSHLLNLGLACHFTGF 297
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ + F RE M E +G+R GG+ +D+ E + +
Sbjct: 298 DSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKEDMIQTRQLAQQMRRDVQ 357
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 358 ELVDMLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPM 417
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
++ D R VR+ E+ ++ +I ++ L G GP+ +P + A
Sbjct: 418 EVHSEHGCDVISRLKVRINEVYTALNMIDFGLDNLPG----GPLMVEGFTYIPHRFAL-- 471
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
EAP+G+ + ++ K YR + RA YA+
Sbjct: 472 -------------------------GFSEAPRGDDIHWSMTGDNQKLYRWRCRAATYANW 506
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ ++ +G+ ++D I+GSLD + DR
Sbjct: 507 PTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537
>gi|14521672|ref|NP_127148.1| hydrogenase-4 component g [Pyrococcus abyssi GE5]
gi|5458891|emb|CAB50378.1| Hydrogenase 4, component G or formate hydrogen lyase, subunit 5
[Pyrococcus abyssi GE5]
Length = 588
Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats.
Identities = 113/391 (28%), Positives = 176/391 (45%), Gaps = 35/391 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETK-TFLQAVPYFDRL 68
T+ GP H L + GE + VD HRG EK+ E + T+ Q + +R+
Sbjct: 198 TVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERI 257
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+ +YA+A+E+L +EIP R + IR L E+ RI +HLL V A VG T
Sbjct: 258 CGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTG 317
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
+ + RE +M ER +G+R GGV +DI E+I +
Sbjct: 318 FMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFL 377
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYE---CYSELDF 245
+++ F +R +G + + A + G R SG D R Q + Y+ELD+
Sbjct: 378 EVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDW 437
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+P+ K GD R LVRM E+ ES+ I+ Q ++++ G + + PV P+
Sbjct: 438 KVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDVMVPVG------RLPEYE--- 488
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
E EA +GE Y+++ NK YR K+RAP Y +L
Sbjct: 489 ----------------------EALGFTEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNL 526
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A+ + KG+ +AD I+ S+D + +R
Sbjct: 527 PAVPEMLKGYHVADAPLIIASIDPCYSCTER 557
>gi|260597690|ref|YP_003210261.1| formate hydrogenlyase subunit 5 [Cronobacter turicensis z3032]
gi|260216867|emb|CBA30403.1| Formate hydrogenlyase subunit 5 [Cronobacter turicensis z3032]
Length = 569
Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats.
Identities = 98/393 (24%), Positives = 166/393 (42%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
+++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 176 DAKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q IR + E+ R+ SHLLN+ V
Sbjct: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQAIRAILLEVERLHSHLLNLGLACHFV 295
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ + +
Sbjct: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGMNLIGGIRRDLLKDDMIQTRQLAQQMRRE 355
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ D+ +L +QR V IG + + A + G M+R SG A D R P+ Y L
Sbjct: 356 VQDLVSILLSTPNIEQRTVGIGRLDPQIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ I + D R VR+ E+ ++ +I ++ L G
Sbjct: 416 PMEVHIEQGCDVISRLKVRINEVFTALNMIDFGLDNLPGGP------------------- 456
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
L ++P EAP+G+ + ++ K YR + RA YA
Sbjct: 457 ------------LLVEGFTYIPNRFALGFSEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 504
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 505 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537
>gi|156934235|ref|YP_001438151.1| hypothetical protein ESA_02065 [Cronobacter sakazakii ATCC BAA-894]
gi|156532489|gb|ABU77315.1| hypothetical protein ESA_02065 [Cronobacter sakazakii ATCC BAA-894]
Length = 569
Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats.
Identities = 96/393 (24%), Positives = 164/393 (41%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
+++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 176 DAKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q IR + E+ R+ SHLLN+ V
Sbjct: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQAIRAILLEVERLHSHLLNLGLACHFV 295
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ + +
Sbjct: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGMNLIGGIRRDLLKDDMTQTRQLAQQMRRE 355
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ D+ +L +QR IG + + A + G M+R SG A D R P+ Y L
Sbjct: 356 VQDLVSILLSTPNIEQRTAGIGRLDPQIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ ++ +I ++ L G
Sbjct: 416 PMEVHSEQGCDVISRLKVRINEVFTALNMIDFGLDNLPGGP------------------- 456
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
L ++P EAP+G+ + ++ K YR + RA YA
Sbjct: 457 ------------LLVEGFTYIPNRFALGFSEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 504
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 505 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537
>gi|88603008|ref|YP_503186.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Methanospirillum
hungatei JF-1]
gi|88188470|gb|ABD41467.1| ech hydrogenase subunit E [Methanospirillum hungatei JF-1]
Length = 359
Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats.
Identities = 115/391 (29%), Positives = 184/391 (47%), Gaps = 33/391 (8%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
S+ + FGPQHP + L L L+ E V P IG +HRG EKL+E + + V
Sbjct: 2 SKQIIVPFGPQHPVLPEPIHLDLVLEDERVVEAIPSIGYVHRGLEKLVEKRDYKDYVFIS 61
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
+R+ + Y VE+++GIEIP R + +R ++SE R+ SHLL + A +G
Sbjct: 62 ERICGICSFIHGATYCQGVEQIMGIEIPRRAEFLRAIWSEYSRMHSHLLWLGCFADGIGY 121
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ ++ REK++ ER +G R+ R GGV +D+ ++ I C
Sbjct: 122 ENLFMNCWKVREKILDVLERTTGGRVIQGVNRVGGVSRDMDAAELKRIECEIPGLRDDFT 181
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+++ + + + R IG + + AW G G +IRGSG A D R + Y Y ELDF
Sbjct: 182 ELTRIFDEDLTVQTRTKGIGILPKDKAWDLGAVGPVIRGSGYAVDARSTG-YGAYDELDF 240
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ DC+ R LVR E+ S+ +I ++R+ + + PV +
Sbjct: 241 KPVVRNEADCHARCLVRAEELFTSLDLIENAIDRIPAGDILAPVKGN------------- 287
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
P GE YA E P+GE Y+ ++G R ++R P A++
Sbjct: 288 -------------------PSGEYYARAEQPRGEVIHYVKANGKKNLLRHRVRTPTLANV 328
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A+ + G +LADV I+ ++D G ++R
Sbjct: 329 PALVHMLAGCELADVPVIVLTIDPCIGCMER 359
>gi|283835551|ref|ZP_06355292.1| hydrogenase-4 component G [Citrobacter youngae ATCC 29220]
gi|291068761|gb|EFE06870.1| hydrogenase-4 component G [Citrobacter youngae ATCC 29220]
Length = 569
Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats.
Identities = 99/393 (25%), Positives = 168/393 (42%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI +P R Q+IR + E+ R+ SHLLN+
Sbjct: 236 LSDRVCGICGFAHSTAYTTSVENAMGIVVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ + +
Sbjct: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGMNLIGGIRRDLLKDDMIQTRQLAQQMRRE 355
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 356 VQELVDMLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ ++ +I ++ L G GP++ +P + A
Sbjct: 416 PMEVHSEQGCDVISRLKVRINEVYTALNMIDFGLDNLPG----GPLAVEGFTYIPHRFAL 471
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 472 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 504
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 505 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537
>gi|282860264|ref|ZP_06269334.1| respiratory-chain NADH dehydrogenase, 49 Kd subunit [Prevotella
bivia JCVIHMP010]
gi|282586938|gb|EFB92173.1| respiratory-chain NADH dehydrogenase, 49 Kd subunit [Prevotella
bivia JCVIHMP010]
Length = 525
Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats.
Identities = 131/391 (33%), Positives = 199/391 (50%), Gaps = 29/391 (7%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ +NFGPQHPA HGVLRL LDGE V+R+ PH+G +HRG EKL E T+ Q +
Sbjct: 164 DDDYVVNFGPQHPAMHGVLRLQTVLDGETVKRIYPHLGYIHRGIEKLCEDFTYPQTLALT 223
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DR++Y++ M HA +E+ LG+E+ R + +R + E+ RI +HLL + A D+GA
Sbjct: 224 DRMNYLSAMMNRHALVGVIEEGLGVELSDRIKYVRTIMDELQRIDNHLLYTSCVAQDLGA 283
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
LT L+G +RE ++ E +G R+ Y+R GG+ DI P V ++ C +
Sbjct: 284 LTAFLYGMRDREHVLNVMEETTGGRLIQNYYRIGGLQADIDPNFVSNVKKLCKYLRPMVQ 343
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ D+ N I +R +G + D + +G R +G D+RK PY+ Y +++F
Sbjct: 344 EYLDVFGDNVITHKRLEKVGYMNATDCISYAVTGPAGRAAGWRNDVRKYHPYDMYDKVNF 403
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
D + GD DRY + E+ +S+ II Q ++ + G I+
Sbjct: 404 DEVVLSGGDSMDRYYCHIQEIYQSLNIIEQLIDNI----PEGDFYIKQKPII-------- 451
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
VP G+ Y AVE GEFG YL S G YR K R G +
Sbjct: 452 -----------------KVPEGQWYYAVEGASGEFGCYLDSRGDKTAYRMKFRPMGLTLV 494
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A++ + KG ++AD+ + +LD V ++DR
Sbjct: 495 GALDKMLKGEKIADLITNVAALDFVIPDIDR 525
>gi|331654198|ref|ZP_08355198.1| formate hydrogenlyase subunit 5 (FHL subunit 5)(Hydrogenase-3
component E) [Escherichia coli M718]
gi|331047580|gb|EGI19657.1| formate hydrogenlyase subunit 5 (FHL subunit 5)(Hydrogenase-3
component E) [Escherichia coli M718]
Length = 576
Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats.
Identities = 96/393 (24%), Positives = 166/393 (42%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 183 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 242
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 243 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 302
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ + +
Sbjct: 303 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMNQTRQLAQQMRRE 362
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 363 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 422
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ ++ + ++ L GP+ +P + A
Sbjct: 423 PMEVHSEQGCDVISRLKVRINEVYTALNM----IDYGLDNLPGGPLMVEGFTYIPHRFAL 478
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K +R + RA YA
Sbjct: 479 ---------------------------GFAEAPRGDDIHWSMTGDNQKLFRWRCRAATYA 511
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 512 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 544
>gi|261342163|ref|ZP_05970021.1| hydrogenase-4 component G [Enterobacter cancerogenus ATCC 35316]
gi|288315496|gb|EFC54434.1| hydrogenase-4 component G [Enterobacter cancerogenus ATCC 35316]
Length = 569
Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats.
Identities = 98/392 (25%), Positives = 167/392 (42%), Gaps = 34/392 (8%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVPYF 65
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 178 KNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLS 237
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DR+ + AY +VE +GI +P R Q++R + E+ R+ SHLLN+ VG
Sbjct: 238 DRVCGICGFAHSTAYTTSVENGMGIVVPERAQMVRAILLEVERLHSHLLNLGLACHFVGF 297
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ + F RE M E +G+R GG+ +D+ + + +
Sbjct: 298 DSGFMQFFRVREASMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRDVQ 357
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
++ D+L +QR V IG + + A + G M+R SG A D R P+ Y L
Sbjct: 358 ELVDMLLSTPNIEQRTVGIGRLDPQIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPM 417
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
++ + D R VR+ E+ ++ +I ++ L G
Sbjct: 418 EVHSEQGCDVISRLKVRINEVFTALNMIDFGLDNLPGGP--------------------- 456
Query: 306 RSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
L EG+ +P EAP+G+ + ++ K YR + RA YA+
Sbjct: 457 -----------LMVEGFTYIPNRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYAN 505
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ ++ +G+ ++D I+GSLD + DR
Sbjct: 506 WPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537
>gi|57234354|ref|YP_181593.1| hydrogenase, group 4, EchE subunit, putative [Dehalococcoides
ethenogenes 195]
gi|57224802|gb|AAW39859.1| hydrogenase, group 4, EchE subunit, putative [Dehalococcoides
ethenogenes 195]
Length = 359
Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats.
Identities = 109/390 (27%), Positives = 175/390 (44%), Gaps = 34/390 (8%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
I FGPQHP ++L LE + E V V P IG +HRG EK E T Q + +R
Sbjct: 3 RTVIPFGPQHPVFPEPVQLKLECEDETVVGVTPVIGYVHRGVEKACEINTLRQNIFLVER 62
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ + + Y +E+L GIE+P R +R ++E+ R+ SH L + A +G +
Sbjct: 63 ICGICSIQHALCYCQGIEELAGIEVPQRAHYLRTAWAELSRLHSHSLWLGLLADALGFES 122
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND- 186
+ + RE ++ E +G R+ + GGV +DI E+++ F ++
Sbjct: 123 LFMQIWRAREIILDILEMTAGHRVITSACVVGGVRRDIDTEMLKKTSDMLAEFRKMMDKT 182
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
I L + K+R V G + + A G G +RGSG D R + Y + EL F+
Sbjct: 183 ILPTLLNDPTLKKRTVGKGILSYDQAVTLGACGPTMRGSGVPSDARATG-YAAFKELGFE 241
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ GD Y R LVR E+ +S+ + + ++ ++
Sbjct: 242 PVVETAGDSYARTLVRTREIYQSIDLTLAALQQMPAG-------------------EIMV 282
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
E+ P GE++ VE P+GE Y+ ++G N RCKIR P +A++
Sbjct: 283 KAEAY-------------PEGEIFTRVEQPRGELTYYIKANGTNHLDRCKIRTPTFANIP 329
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + G +LADV I S+D +R
Sbjct: 330 TLLVMLPGCELADVPVITLSIDPCISCTER 359
>gi|317503350|ref|ZP_07961397.1| NADH-quinone oxidoreductase subunit C/D [Prevotella salivae DSM
15606]
gi|315665529|gb|EFV05149.1| NADH-quinone oxidoreductase subunit C/D [Prevotella salivae DSM
15606]
Length = 523
Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats.
Identities = 133/392 (33%), Positives = 199/392 (50%), Gaps = 29/392 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
F +N GP HP+ HGVLRL LDGE+V+ + PH+G +HRG EK+ E+ T+ Q + +
Sbjct: 161 DEDDFIVNLGPNHPSMHGVLRLQTVLDGEVVKHIYPHLGYIHRGMEKMCESMTYPQTLAF 220
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRL+Y+ M HA +E+ +GIE+ R Q IR + E+ RI +HLL + T A D+
Sbjct: 221 TDRLNYLCAMMHRHALVGVIEEGMGIELSERIQYIRTIMDELQRINNHLLFLGTCAQDLS 280
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
ALT L+ +RE ++ E +G R+ Y+R GG+ DI P V++ C +
Sbjct: 281 ALTAFLYCMRDREHVLNVMEETTGGRLIQNYYRIGGLQDDIDPNFVQNTKTLCKYLRPMV 340
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ D+ N I QR +G + LED + +G R +G D+RK+ PY Y ++D
Sbjct: 341 QEYLDVFGDNVITHQRLEGVGPMNLEDCINYAVTGPAGRAAGWHNDVRKNHPYAMYGKVD 400
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F+ D RY+V + E+ +S+ II Q ++ + G I+
Sbjct: 401 FEDITLTGADSMARYMVHIQEIYQSLNIIEQLIDNI----PEGDFYIKQKPII------- 449
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
VP G+ Y +VE GEFGVYL S G PYR K+R G
Sbjct: 450 ------------------KVPEGQWYFSVEGGAGEFGVYLDSRGDKSPYRLKMRPMGLTL 491
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A + + KG +LAD+ A ++D V ++DR
Sbjct: 492 TGAFDKMLKGQKLADLVATGAAIDFVIPDIDR 523
>gi|311278311|ref|YP_003940542.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Enterobacter
cloacae SCF1]
gi|308747506|gb|ADO47258.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Enterobacter
cloacae SCF1]
Length = 569
Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats.
Identities = 101/391 (25%), Positives = 167/391 (42%), Gaps = 32/391 (8%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVPYF 65
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 178 KNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLS 237
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DR+ + AY +VE +GI +P R Q+IR + E+ R+ SHLLN+ VG
Sbjct: 238 DRVCGICGFAHSTAYTTSVENAMGIVVPERAQMIRAILLEVERLHSHLLNLGLACHFVGF 297
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ + F RE M E +G+R GG+ +D+ + + +
Sbjct: 298 DSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIKTRQLAQQMRREVQ 357
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
D+ D+L QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 358 DLVDMLLSTPNMAQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPM 417
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
++ + D R VR+ E+ ++ +I ++ L G GP+ +P + A
Sbjct: 418 EVHSEQGCDVISRLKVRINEVYTALNMIDFGLDNLPG----GPLMVEGFTYIPHRFAL-- 471
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
EAP+G+ + ++ K YR + RA YA+
Sbjct: 472 -------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANW 506
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ ++ +G+ ++D I+GSLD + DR
Sbjct: 507 PTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537
>gi|154149577|ref|YP_001403195.1| NADH dehydrogenase (ubiquinone) [Candidatus Methanoregula boonei
6A8]
gi|153998129|gb|ABS54552.1| NADH dehydrogenase (ubiquinone) [Methanoregula boonei 6A8]
Length = 359
Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats.
Identities = 111/391 (28%), Positives = 189/391 (48%), Gaps = 33/391 (8%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
S+ T+ FGPQHP + L L L+ E V V P IG +HRG EKL+E + + + +
Sbjct: 2 SKQITVPFGPQHPVLPEPIHLDLVLEDERVVDVIPSIGYVHRGLEKLVEKREYPEYIYVA 61
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
+R+ + + YA VE ++ IE+P R Q +R +++E R+ SHLL + A +G
Sbjct: 62 ERICGICSYIHSNTYAECVEHIMKIEVPERAQYLRTIWTEYSRLHSHLLWLGLFADGMGF 121
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ + ++ RE ++ E +G R+ + GGV +DI PE ++++ + A+
Sbjct: 122 ESVFMNAWKLREHILDDLEATTGGRVIQGVCKIGGVRRDIAPEKLDEMVKGLRAMEPAIR 181
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
D++++ + R +G ++ DA+ G G RGSG DLR++ Y + +++F
Sbjct: 182 DLTNVFLNDASVSHRLKGVGILQKGDAYTLGAVGPTARGSGIGIDLRQTG-YAAFGKINF 240
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ + GDCY R VR E+ S+ I+ QCV ++ V+ +
Sbjct: 241 KPVVEQSGDCYARCAVRAKELFTSIDIVEQCVKKIPEGPVEVKVTGA------------- 287
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
P GE +A E P+GE Y+ +G R ++R P + ++
Sbjct: 288 -------------------PDGEYFARAEQPRGEVVHYIKGNGKRNLVRHRVRTPTFTNI 328
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ L KG +LADV I+ S+D G +R
Sbjct: 329 PPLVTLLKGCELADVPMIVLSIDPCVGCAER 359
>gi|295097302|emb|CBK86392.1| Ni,Fe-hydrogenase III large subunit [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 569
Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats.
Identities = 100/392 (25%), Positives = 166/392 (42%), Gaps = 34/392 (8%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVPYF 65
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 178 KNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLS 237
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DR+ + AY +VE +GI +P R Q+IR + E+ R+ SHLLN+ VG
Sbjct: 238 DRVCGICGFAHSTAYTTSVENGMGIVVPERAQMIRAILLEVERLHSHLLNLGLACHFVGF 297
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ + F RE M E +G+R GG+ +D+ + + +
Sbjct: 298 DSGFMQFFRVREASMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRDVQ 357
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 358 ELVDMLLSTPNIEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPM 417
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ + D R VR+ E+ ++ +I ++ L G
Sbjct: 418 TVHSEQGCDVISRLKVRINEVFTALNMIDYGLDNLPGGP--------------------- 456
Query: 306 RSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
L EG+ +P EAP+G+ + ++ K YR + RA YA+
Sbjct: 457 -----------LMVEGFTYIPNRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYAN 505
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ ++ +G+ ++D I+GSLD + DR
Sbjct: 506 WPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537
>gi|238757222|ref|ZP_04618409.1| Formate hydrogenlyase subunit 5 [Yersinia aldovae ATCC 35236]
gi|238704600|gb|EEP97130.1| Formate hydrogenlyase subunit 5 [Yersinia aldovae ATCC 35236]
Length = 596
Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats.
Identities = 108/396 (27%), Positives = 172/396 (43%), Gaps = 32/396 (8%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQ 60
++ S S + GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 200 NEAGSSSRVVPIGPMHITSDEPGHFRLFVDGEDIIDADYRLFYVHRGMEKLAETRMGYND 259
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
DR+ + AY ++E LGI +P R Q+IR + E+ R+ SHLLN+
Sbjct: 260 VTFLSDRICGICGFTHSVAYTSSIENALGIIVPPRAQMIRTILLEVERLHSHLLNIGLSC 319
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
VG T + F REK M E +G+R GGV +DI
Sbjct: 320 HFVGFDTGFMQFFRVREKAMTIAEMLTGARKTYGLNLIGGVRRDILKADRIKTLQLVSEM 379
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ ++++ D+L +QR V +G + + A + G MIR SG A D+R PY Y
Sbjct: 380 RADISELVDMLMSTANIEQRTVGVGMLDRKIARDFSPVGPMIRASGYARDMRHDHPYANY 439
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+ + ++ D + R LVR+ E +S+ +I +N + G GP+ P K
Sbjct: 440 ANIPKELFSLDGCDVHSRLLVRVREFFDSLVMIEYGLNHMPG----GPLLEEKVHYQPYK 495
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
A EAP+GE + ++ K +R + RA
Sbjct: 496 FAL---------------------------GFSEAPRGEDVHWSMTGDNQKLFRWRCRAA 528
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 529 TYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 564
>gi|146312835|ref|YP_001177909.1| NADH dehydrogenase (ubiquinone), 30 kDa subunit [Enterobacter sp.
638]
gi|145319711|gb|ABP61858.1| NADH dehydrogenase (ubiquinone), 30 kDa subunit [Enterobacter sp.
638]
Length = 569
Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats.
Identities = 100/392 (25%), Positives = 166/392 (42%), Gaps = 34/392 (8%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVPYF 65
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 178 KNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLS 237
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DR+ + AY +VE +GI +P R Q+IR + E+ R+ SHLLN+ VG
Sbjct: 238 DRVCGICGFAHSTAYTTSVENGMGIVVPERAQMIRAILLEVERLHSHLLNLGLACHFVGF 297
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ + F RE M E +G+R GG+ +D+ + + +
Sbjct: 298 DSGFMQFFRVREASMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRLLAQQMRRDVQ 357
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
++ D+L +QR V IG + + A + G M+R SG A D R P+ Y L
Sbjct: 358 ELVDMLLSTPNIEQRTVGIGRLDPQIARDFSNVGPMVRASGHARDTRTDHPFVGYGLLPM 417
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
I + D R VR+ E+ ++ +I ++ L G
Sbjct: 418 TIHTEQGCDVISRLKVRINEVFTALNMIDFGLDNLPGGP--------------------- 456
Query: 306 RSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
L EG+ +P EAP+G+ + ++ K YR + RA YA+
Sbjct: 457 -----------LMVEGFTYIPNRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYAN 505
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ ++ +G+ ++D I+GSLD + DR
Sbjct: 506 WPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537
>gi|332161097|ref|YP_004297674.1| hydrogenase-4 component G [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|318604976|emb|CBY26474.1| formate hydrogenlyase subunit 5 [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325665327|gb|ADZ41971.1| hydrogenase-4 component G [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
Length = 596
Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats.
Identities = 106/396 (26%), Positives = 170/396 (42%), Gaps = 32/396 (8%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQ 60
++ SRS + GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 200 NEAGSRSRVVPIGPMHITSDEPGHFRLFVDGEDIIDADYRLFYVHRGMEKLAETRMGYND 259
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
DR+ + AY ++E LGI +P R Q+IR + E+ R+ SHLLN+
Sbjct: 260 VTFLSDRICGICGFTHSVAYTSSIENALGIIVPPRAQMIRTILLEVERLHSHLLNIGLSC 319
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
VG T + F REK M E +G+R GGV +DI
Sbjct: 320 HFVGFDTGFMQFFRVREKAMTIAEMLTGARKTYGLNLIGGVRRDILKADRIKTLQLVSEM 379
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ ++++ D+L +QR + +G + + A + G MIR SG A D+R PY Y
Sbjct: 380 RADISELVDMLMSTANIEQRTMGVGMLDRKIARDFSPVGPMIRASGYARDMRHDHPYANY 439
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+ + ++ D + R LVR+ E +S+ + + L GP+ P K
Sbjct: 440 ANIPKELFSLDGCDVHSRLLVRVREFFDSLVM----IEYGLNHMPDGPLLEEKVHYQPYK 495
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
A EAP+GE + ++ K +R + RA
Sbjct: 496 FAL---------------------------GFSEAPRGEDVHWSMTGDNQKLFRWRCRAA 528
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 529 TYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 564
>gi|159040212|ref|YP_001539465.1| NADH dehydrogenase (quinone) [Salinispora arenicola CNS-205]
gi|218534370|sp|A8M8F6|NUOD2_SALAI RecName: Full=NADH-quinone oxidoreductase subunit D 2; AltName:
Full=NADH dehydrogenase I subunit D 2; AltName:
Full=NDH-1 subunit D 2
gi|157919047|gb|ABW00475.1| NADH dehydrogenase (quinone) [Salinispora arenicola CNS-205]
Length = 385
Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats.
Identities = 130/393 (33%), Positives = 205/393 (52%), Gaps = 27/393 (6%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++ +N GPQHP+ HGVLRL L LDGE V +P +G +HRG EKL E + + Q +
Sbjct: 19 EQLGTDMVLNIGPQHPSTHGVLRLRLVLDGERVVSAEPIVGYMHRGAEKLFEVRDYRQII 78
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
+R D+++ E LAVE+L+G+E+P R +R+ +E+ R+L+HL+ + + ++
Sbjct: 79 VLANRHDWLSAFANELGVVLAVERLMGMEVPERATWLRMALAELNRVLNHLMFLGSYPLE 138
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA+TP + F ERE L E SG R+H + R GG+ +++P
Sbjct: 139 IGAITPMFYAFRERETLQAVLEEVSGGRIHYMFNRVGGLKEEVPAGWTGRARTAIGEVRR 198
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ D+ L+ N IF R V +G + A +G SG + R SG DLR+ +PY Y +
Sbjct: 199 RMPDLDRLIRRNEIFLARTVGVGVLSAAQAAAFGASGPVARASGLDLDLRRDEPYLAYDQ 258
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
L+ + GDC+ R+ V + ++ S+ + QC++++ GPV+ PK++
Sbjct: 259 LEVPVVTRTAGDCHSRFEVLLDQVYVSLDLAEQCLDQVDRLT--GPVNTRLPKVL----- 311
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
P G YA E P G G YL+S G P+R K+R Y
Sbjct: 312 --------------------KAPEGHTYAWTENPLGINGYYLVSRGEKTPWRLKLRTASY 351
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
A++QA+ L G + D+ AILGS+ V G++D
Sbjct: 352 ANVQALATLLPGCLVPDLIAILGSMFFVVGDID 384
>gi|73667698|ref|YP_303713.1| ech hydrogenase subunit E [Methanosarcina barkeri str. Fusaro]
gi|72394860|gb|AAZ69133.1| ech hydrogenase subunit E [Methanosarcina barkeri str. Fusaro]
Length = 358
Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats.
Identities = 116/389 (29%), Positives = 185/389 (47%), Gaps = 32/389 (8%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
+ I FGPQHP + L LE+D ++V V P +G +HRG E I TK F Q +R
Sbjct: 2 TTVIPFGPQHPVLPEPVSLKLEIDDDVVVGVLPSLGYVHRGLETFINTKDFNQTTYVCER 61
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ + Y VEKL EIP R Q IRV+ E+ R+ SHLL + A G +
Sbjct: 62 ICGICSALHGITYTRTVEKLFDTEIPERAQYIRVIVGELNRLHSHLLWLGLFADGFGFES 121
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
++ RE+++ ER G+R+ + + GGV +D+ E ++ + CDS + + +I
Sbjct: 122 LFYECWKYREEVLDVAERICGNRVIHSISKVGGVTRDLTKEHIDMLLKMCDSLETEIKNI 181
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ N KQR V + T+ + A+ G +G +RGSG A D+R++ ++ Y +L F
Sbjct: 182 EKVFVNNYTVKQRLVGLATLSKQVAYEVGTAGPTLRGSGNAIDVRETPDWDIYKDLGFKT 241
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
+ K GDCY R VR+ E+ S+ IIR ++++ V
Sbjct: 242 AVEKDGDCYARTKVRITELLNSLTIIRNAISKMPEGEIEVRVKGF--------------- 286
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
P GE E P+GE Y+ +G K R K+R P +A++ +
Sbjct: 287 -----------------PTGEAIMRTEQPRGEVIYYVKGNGTKKLERLKVRTPTFANIPS 329
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + G +LADV ++ ++D +R
Sbjct: 330 LLLMLPGVKLADVPIVVLTIDPCVSCTER 358
>gi|240102302|ref|YP_002958610.1| formate hydrogenlyase I subunit F (Mhy1F) [Thermococcus
gammatolerans EJ3]
gi|239909855|gb|ACS32746.1| formate hydrogenlyase I subunit F (Mhy1F) [Thermococcus
gammatolerans EJ3]
Length = 601
Score = 319 bits (819), Expect = 3e-85, Method: Composition-based stats.
Identities = 114/407 (28%), Positives = 177/407 (43%), Gaps = 42/407 (10%)
Query: 1 MDKKKSR-------SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLI 53
M + K+ + + GP H L + GE + VD HRG EK
Sbjct: 196 MAEVKTEYRETPEGTTLVPMGPVHAGIEEPAHFRLFVKGEEIVDVDYRGFYSHRGIEKTG 255
Query: 54 ETK-TFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSH 112
E + T+ Q + +R+ + +YA+AVE+L ++IP R + IR L E+ RI +H
Sbjct: 256 EGRLTYNQVLFLAERICGICGYQHSVSYAMAVERLADVDIPDRARYIRTLMLELERIHNH 315
Query: 113 LLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVED 172
LL V A VG T + + RE +M ER +G+R GGV +DI E+
Sbjct: 316 LLWVGIAAHLVGYDTGFMHAWRIREPVMWLVERLTGNRKQYGMNIVGGVRRDILDYRKEE 375
Query: 173 IGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLR 232
I D+ F +R +G + + A + G R SG D R
Sbjct: 376 ILKVVKQIREETKKFLDIALNTNTFIKRAEGVGILPYKVAKAYSVLGPTARASGRRIDTR 435
Query: 233 KSQPYE---CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPV 289
Q + Y+E+DF +P+ K GD R LVRM E+ ES+ I+ Q ++++ G + + P+
Sbjct: 436 LDQATKTAMAYNEVDFKVPVYKEGDVLARVLVRMDELFESLWIVEQLIDQMPGGDIMVPI 495
Query: 290 SASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGG 349
P+ E EA +GE Y+++
Sbjct: 496 GD------LPEYE-------------------------EALGFTEAHRGEVVHYVMTGEK 524
Query: 350 NKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
NK YR K+RAP Y +L A+ + KG+ +AD I+ S+D + +R
Sbjct: 525 NKVYRWKVRAPTYNNLPAVPEMLKGYHVADAPLIIASIDPCYSCTER 571
>gi|222479141|ref|YP_002565378.1| NADH-ubiquinone oxidoreductase chain 49kDa [Halorubrum
lacusprofundi ATCC 49239]
gi|222452043|gb|ACM56308.1| NADH-ubiquinone oxidoreductase chain 49kDa [Halorubrum
lacusprofundi ATCC 49239]
Length = 554
Score = 319 bits (819), Expect = 3e-85, Method: Composition-based stats.
Identities = 149/401 (37%), Positives = 215/401 (53%), Gaps = 30/401 (7%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFL-QA 61
+S + +N GP HPA HGVL L LDGE V V+P IG LHR E++ ++ T+ Q
Sbjct: 177 DAESDTMFLNIGPHHPATHGVLHLKTVLDGEQVVDVEPDIGYLHRSEEQMAQSGTYRHQI 236
Query: 62 VPYFDRLDYVAP-MNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY DR DY++ + E AYA A E L IE+P Q+IR + +E+ RI +H+L + T A
Sbjct: 237 MPYPDRWDYISAGLLNEWAYARAAEDLADIEVPEYAQVIRTMGAEMCRIAAHMLALATFA 296
Query: 121 MDV--GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIP---PELVEDIGC 175
+D+ ++ +RE++ E +G R+ YFR GGV D+P E
Sbjct: 297 LDINGDFTATFMYAINDRERVQNLLEDLTGQRLMFNYFRLGGVVWDLPEPRDEFFSKTRD 356
Query: 176 WCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQ 235
+ D P ++ + +L+T N IF+ R ++ G + E A +G +G + RGSG +DLR+
Sbjct: 357 FLDHLPESVEEYHNLITSNEIFQMRTIDTGILPPEVAKNYGATGPVARGSGVDYDLRRDD 416
Query: 236 PYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPK 295
PY Y ELD+D+ D + R LVRM E+ ES KII QCV+ L + ++
Sbjct: 417 PYGYYDELDWDVITEDGCDNFSRLLVRMREVEESAKIIEQCVDLLEDWPEDERNIQANVP 476
Query: 296 IVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRC 355
D E+Y AVE KGE G+Y+ +DG +KP R
Sbjct: 477 RTLRPDDDT-----------------------EIYRAVEGAKGELGIYIRADGTDKPARF 513
Query: 356 KIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
KIR+P +++LQ + + G + DV A LGSLDIV GEVDR
Sbjct: 514 KIRSPCFSNLQTLPEMANGEYIPDVVAALGSLDIVLGEVDR 554
>gi|288926086|ref|ZP_06420014.1| NADH dehydrogenase I, D subunit [Prevotella buccae D17]
gi|288337126|gb|EFC75484.1| NADH dehydrogenase I, D subunit [Prevotella buccae D17]
Length = 520
Score = 319 bits (819), Expect = 3e-85, Method: Composition-based stats.
Identities = 126/391 (32%), Positives = 201/391 (51%), Gaps = 29/391 (7%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
F IN GPQHP+ HGVLRL LDGE ++++ PH+G +HRG EK+ E+ T+ Q +
Sbjct: 159 DDDFVINIGPQHPSTHGVLRLQTILDGETIKKIYPHLGYIHRGIEKMCESYTYPQTLALT 218
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DR+DY++ M HA +E+ +G+E+ R + IR + E+ RI SHLL + A D+GA
Sbjct: 219 DRMDYLSAMQTRHALCGVIEEAMGVELSDRIKYIRTIMDELQRIDSHLLYLGCFAQDLGA 278
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
LT L+ +RE ++ E +G R+ Y+R GGV +DI P V+++ C +
Sbjct: 279 LTAFLYCMRDREHVLNVMEETTGGRLIQNYYRIGGVQEDIDPNFVQNVKTLCTYLKPMIQ 338
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ D+ N I R +G + ++ +G +G R S D+RK+ PY Y E+DF
Sbjct: 339 EYLDVFGDNVITHNRLEKVGVMDKKNCISYGVTGCSGRASDWRSDVRKNHPYALYGEVDF 398
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ + D RY R+ E+++S++II Q ++ + +
Sbjct: 399 EEIVCDTRDSMGRYYNRIEEIKQSIRIIEQLIDNIPEGDFYIKQK--------------- 443
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
VP G+ Y + E +GE GVYL S G PYR K+R G +
Sbjct: 444 --------------PVIKVPEGQWYFSTEGSRGEIGVYLDSRGDKSPYRLKLRPMGLNLV 489
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A++ +C+G ++AD+ + LD + ++DR
Sbjct: 490 AALDEMCRGEKVADLITVGAGLDYIIPDIDR 520
>gi|300711698|ref|YP_003737512.1| NADH dehydrogenase-like complex subunit CD [Halalkalicoccus
jeotgali B3]
gi|299125381|gb|ADJ15720.1| NADH dehydrogenase-like complex subunit CD [Halalkalicoccus
jeotgali B3]
Length = 555
Score = 319 bits (819), Expect = 3e-85, Method: Composition-based stats.
Identities = 149/402 (37%), Positives = 210/402 (52%), Gaps = 32/402 (7%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFL-QA 61
+ + + +N GP HPA HGVL L LDGE V VD IG LHR E++ + T+ Q
Sbjct: 178 DEDTDTMFLNIGPHHPATHGVLHLKTVLDGEQVVDVDSDIGYLHRCEEQMAQKGTYRHQI 237
Query: 62 VPYFDRLDY-VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY DR DY + E YA A E L IE+P Q+IR + +E+ RI SH+L + T
Sbjct: 238 MPYPDRWDYAPGGLMNEWGYARAAEDLADIEVPEYAQVIRTMGAELCRICSHMLALGTFC 297
Query: 121 MDVG--ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP---ELVEDIGC 175
+D+ ++ +REK E +GSRM Y R GGV D+P E E +
Sbjct: 298 LDIYGDFTAIFMYAMRDREKCQSLLEDLTGSRMMFNYLRLGGVAWDLPEPREEFFEKVRD 357
Query: 176 WCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQ 235
+ D P A + DL+T N IF+ R V G + + A +G +G + R SG +DLR+
Sbjct: 358 FLDDLPEATQEYHDLITSNEIFQIRTVGTGVLDTDVAKQYGATGPVARASGVDYDLRRDD 417
Query: 236 PYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPK 295
PY Y ELD+D+ + GD Y R LVRM E+ +S +I+ QC++ L
Sbjct: 418 PYGYYPELDWDVATEEAGDNYSRLLVRMREVEQSARILEQCIDLL--------------- 462
Query: 296 IVPPKRADMKRSMESLIHHFKLYTEGYHV-PVGEVYAAVEAPKGEFGVYLISDGGNKPYR 354
+ E P E+Y AVEA KGE G+Y+ +DG +KP R
Sbjct: 463 ---------EEWPEDDREIQANVPRTLRPDPDTEIYRAVEAAKGELGIYIRADGTDKPAR 513
Query: 355 CKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
KIR+P +++L + + +G +AD+ A LGSLDI+ GEVDR
Sbjct: 514 FKIRSPCFSNLHVLPEISEGEYVADLIASLGSLDIILGEVDR 555
>gi|189502069|ref|YP_001957786.1| hypothetical protein Aasi_0661 [Candidatus Amoebophilus asiaticus
5a2]
gi|218534382|sp|B3ES55|NUOD_AMOA5 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|189497510|gb|ACE06057.1| hypothetical protein Aasi_0661 [Candidatus Amoebophilus asiaticus
5a2]
Length = 403
Score = 319 bits (819), Expect = 3e-85, Method: Composition-based stats.
Identities = 158/402 (39%), Positives = 219/402 (54%), Gaps = 30/402 (7%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K IN GPQHPA HG+LRL + LDGEIV V PH+G LHR EK T + Q +
Sbjct: 24 DLKVEEVLINIGPQHPATHGILRLEVILDGEIVVDVVPHLGYLHRCFEKHAATLPYNQTI 83
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
P+ DRLDY+A MN EHA+A+ VE +LG+ +P R + IRVL +E+ R+ SH + + T
Sbjct: 84 PFVDRLDYLAAMNSEHAFAMGVEHMLGLTGKLPRRVEYIRVLMAELNRLASHFMAIGTYG 143
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+D+GA T LW +RE ++ +E ASG+RM Y GG++ D+P E +
Sbjct: 144 IDLGAFTSFLWLMRDREYILRLFEWASGARMLYNYIWIGGLYYDLPVGFEERCLEFITYL 203
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L +I+ LL N +F +R N+G + L A G SG ++R SG DLR+ Y Y
Sbjct: 204 KPKLEEINQLLIDNTLFIKRTANVGVLPLATAINHGVSGPILRASGLRLDLRRIDGYSIY 263
Query: 241 SELDFDIPI-----GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPK 295
EL FDIPI G GDC+DR V+ E +ES+KI QC+ RL K
Sbjct: 264 PELSFDIPIGEGLMGHVGDCWDRTWVKFQECKESIKITEQCLVRLTSDLKRT-------- 315
Query: 296 IVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLI-SDGGNKPYR 354
+ + K+ + + Y E P+GE G + SD G+KP R
Sbjct: 316 --------------ADFNPQKMVPKKVRTKAQDCYIRAENPRGELGFFFRASDNGDKPIR 361
Query: 355 CKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
CK R+ +++L + + KG LAD+ AI+GS+DIV GE+DR
Sbjct: 362 CKARSSSFSNLSVISSIAKGQVLADLIAIIGSIDIVLGEIDR 403
>gi|145298796|ref|YP_001141637.1| formate hydrogenlyase subunit 5 precursor [Aeromonas salmonicida
subsp. salmonicida A449]
gi|142851568|gb|ABO89889.1| Formate hydrogenlyase subunit 5 precursor [Aeromonas salmonicida
subsp. salmonicida A449]
Length = 572
Score = 319 bits (819), Expect = 4e-85, Method: Composition-based stats.
Identities = 104/389 (26%), Positives = 164/389 (42%), Gaps = 34/389 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVPYFDRL 68
+ GP H + L +DGE + D + +HRG EKL ET+ + + DR+
Sbjct: 184 IVPVGPLHITSDEPGHFRLFVDGEDIIDADYRLFYVHRGMEKLAETRMGYNEVAFLTDRV 243
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+ AY +VE +GI++P R ++IR + E+ R+ SH+LN+ + G T
Sbjct: 244 CGICGFTHSVAYTTSVENAMGIKVPERAKMIRAVLLEVERLHSHILNIGLSSHFTGFDTG 303
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
+ F REK M E +G+R GGV +DI E L +
Sbjct: 304 FMQFFRVREKSMTLAELLTGARKTYGLNLIGGVRRDIFKEDRIKGAQLVRELRDELKPLV 363
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
+L R V IG + + A + G M+R SG D+R+ + Y EL +I
Sbjct: 364 AMLLDTANITSRLVGIGRLDPQIARDFSCVGPMVRASGFKRDVRRVHDFAAYRELPMEIQ 423
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
D R LVR+ E+ +S+ +I + L
Sbjct: 424 TLAGCDVQSRVLVRIHELYDSLDMIEFGLEHLPEGP------------------------ 459
Query: 309 ESLIHHFKLYTEGYHVPVGE-VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
L TEG+ G+ EAP+GE + ++ K +R + RA YA+ A
Sbjct: 460 --------LLTEGFTYQPGKFALGFTEAPRGENVHWSMTGDNQKLFRWRCRAATYANWPA 511
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ ++ +G+ +AD I+GSLD + DR
Sbjct: 512 LRYMLRGNTVADAPLIIGSLDPCYSCTDR 540
>gi|296104397|ref|YP_003614543.1| NADH dehydrogenase (ubiquinone), 30 kDa subunit [Enterobacter
cloacae subsp. cloacae ATCC 13047]
gi|295058856|gb|ADF63594.1| NADH dehydrogenase (ubiquinone), 30 kDa subunit [Enterobacter
cloacae subsp. cloacae ATCC 13047]
Length = 569
Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats.
Identities = 100/392 (25%), Positives = 165/392 (42%), Gaps = 34/392 (8%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVPYF 65
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 178 KNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLS 237
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DR+ + AY +VE +GI +P R Q+IR + E+ R+ SHLLN+ VG
Sbjct: 238 DRVCGICGFAHSTAYTTSVENGMGIVVPERAQMIRAILLEVERLHSHLLNLGLACHFVGF 297
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ + F RE M E +G+R GG+ +D+ + +
Sbjct: 298 DSGFMQFFRVREASMKMAEILTGARKTYGLNLIGGIRRDLLKNDMIQTRQLAQQMRRDVQ 357
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 358 ELVDMLLSTPNIEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPM 417
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ + D R VR+ E+ ++ +I ++ L G
Sbjct: 418 TVHSEQGCDVISRLKVRINEVFTALNMIDFGLDNLPGGP--------------------- 456
Query: 306 RSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
L EG+ +P EAP+G+ + ++ K YR + RA YA+
Sbjct: 457 -----------LMVEGFTYIPNRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYAN 505
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ ++ +G+ ++D I+GSLD + DR
Sbjct: 506 WPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537
>gi|238761069|ref|ZP_04622046.1| Formate hydrogenlyase subunit 5 [Yersinia kristensenii ATCC 33638]
gi|238761322|ref|ZP_04622298.1| Formate hydrogenlyase subunit 5 [Yersinia kristensenii ATCC 33638]
gi|238700296|gb|EEP93037.1| Formate hydrogenlyase subunit 5 [Yersinia kristensenii ATCC 33638]
gi|238700549|gb|EEP93289.1| Formate hydrogenlyase subunit 5 [Yersinia kristensenii ATCC 33638]
Length = 597
Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats.
Identities = 108/396 (27%), Positives = 172/396 (43%), Gaps = 32/396 (8%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQ 60
++ S S + GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 201 NEAGSSSRVVPIGPMHITSDEPGHFRLFVDGEDIIDADYRLFYVHRGMEKLAETRMGYND 260
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
DR+ + AY ++E LGI +P R Q+IR + E+ R+ SHLLN+
Sbjct: 261 VTFLSDRICGICGFTHSVAYTSSIENALGIIVPPRAQMIRTILLEVERLHSHLLNIGLSC 320
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
VG T + F REK M E +G+R GGV +DI
Sbjct: 321 HFVGFDTGFMQFFRVREKAMTIAEMLTGARKTYGLNLIGGVRRDILKADRIKTLQLVSEM 380
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ ++++ D+L +QR V +G + + A + G MIR SG A D+R PY Y
Sbjct: 381 RADISELVDMLMSTANIEQRTVGVGLLDRKIARDFSPVGPMIRASGYARDMRHDHPYANY 440
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+ + ++ D + R LVR+ E +S+ +I +N + G GP+ P K
Sbjct: 441 ANVPKELFSLDGCDVHSRLLVRVREFFDSLVMIEYGLNHMPG----GPLLEEKVHYQPYK 496
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
A EAP+GE + ++ K +R + RA
Sbjct: 497 FAL---------------------------GFSEAPRGEDVHWSMTGDNQKLFRWRCRAA 529
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 530 TYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 565
>gi|330008025|ref|ZP_08306141.1| respiratory-chain NADH dehydrogenase, subunit [Klebsiella sp. MS
92-3]
gi|328535256|gb|EGF61748.1| respiratory-chain NADH dehydrogenase, subunit [Klebsiella sp. MS
92-3]
Length = 471
Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats.
Identities = 100/391 (25%), Positives = 167/391 (42%), Gaps = 32/391 (8%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVPYF 65
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 80 KNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLS 139
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DR+ + AY +VE +GI +P R Q+IR + E+ R+ SHLLN+ G
Sbjct: 140 DRVCGICGFAHSTAYTTSVENAMGIVVPERAQMIRAILLEVERLHSHLLNLGLACHFTGF 199
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ + F RE M E +G+R GG+ +D+ E + +
Sbjct: 200 DSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKEDMIQTRQLAQQMRRDVQ 259
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 260 ELVDMLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPM 319
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
++ + D R VR+ E+ ++ +I ++ L G GP+ +P + A
Sbjct: 320 EVHSEQGCDVISRLKVRINEVYTALNMIDFGLDNLPG----GPLMVEGFTYIPHRFAL-- 373
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
EAP+G+ + ++ K YR + RA YA+
Sbjct: 374 -------------------------GFSEAPRGDDIHWSMTGDNQKLYRWRCRAATYANW 408
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ ++ +G+ ++D I+GSLD + DR
Sbjct: 409 PTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 439
>gi|270263097|ref|ZP_06191367.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Serratia odorifera
4Rx13]
gi|270042785|gb|EFA15879.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Serratia odorifera
4Rx13]
Length = 567
Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats.
Identities = 104/397 (26%), Positives = 176/397 (44%), Gaps = 32/397 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+ + +++ + GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 171 VSEAGTKANVVPIGPLHITSDEPGHFRLFVDGEDIIDADYRLFYVHRGMEKLAETRMGYN 230
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 231 EVTFLSDRVCGICGFTHSVAYTSSVENAMGIQVPERAQMIRSILLEVERLHSHLLNLGLA 290
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG + + F REK M E +G+R GG+ +DI + +
Sbjct: 291 CHFVGFDSGFMQFFRVREKSMKMAEILTGARKTYGLNLIGGIRRDILKDDMLQTLRLAAE 350
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
S L D+ D+L +QR++ +G + + A + G M+RGSG D R P+
Sbjct: 351 MRSELKDLVDILLSTPNTEQRSIGVGRLDPQIARDYSNVGPMLRGSGHRRDTRIDHPFAG 410
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y++L ++ + D Y R VR+ E+ S+ I + L GP++ +P
Sbjct: 411 YAKLPVELCVETGCDVYSRLKVRIHEVFNSLGI----IEFGLQSLPAGPLAVEGFTYMPH 466
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
K A EAP+G+ + ++ K +R + RA
Sbjct: 467 KFAL---------------------------GFAEAPRGDDIHWSMTGDNQKLFRWRCRA 499
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YA+ + F+ +G+ ++D I+GSLD + DR
Sbjct: 500 ATYANWPTLRFMLRGNTVSDAPLIIGSLDPCYSCTDR 536
>gi|110806652|ref|YP_690172.1| large subunit of hydrogenase 3 (part of FHL complex) [Shigella
flexneri 5 str. 8401]
gi|110616200|gb|ABF04867.1| large subunit of hydrogenase 3 (part of FHL complex) [Shigella
flexneri 5 str. 8401]
gi|332753434|gb|EGJ83814.1| formate hydrogenlyase subunit 5 [Shigella flexneri 4343-70]
gi|333000636|gb|EGK20213.1| formate hydrogenlyase subunit 5 [Shigella flexneri K-218]
Length = 569
Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats.
Identities = 96/393 (24%), Positives = 165/393 (41%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ HLLN+
Sbjct: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHPHLLNLGLACHFT 295
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ + +
Sbjct: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 355
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 356 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGLARDTRADHPFVGYGLL 415
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ ++ + ++ L GP+ +P + A
Sbjct: 416 PMEVHSEQGCDVISRLKVRINEVYTALNM----IDYGLDNLPGGPLMVEGFTYIPHRFAL 471
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 472 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 504
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 505 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537
>gi|3005971|emb|CAA76121.1| echE [Methanosarcina barkeri]
Length = 358
Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats.
Identities = 116/389 (29%), Positives = 184/389 (47%), Gaps = 32/389 (8%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
+ I FGPQHP + L LE+D +V V P +G +HRG E I TK F Q +R
Sbjct: 2 TTVIPFGPQHPVLPEPVSLKLEIDDNVVVGVLPSLGYVHRGLETFINTKDFNQTTYVCER 61
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ + Y VEKL EIP R Q IRV+ E+ R+ SHLL + A G +
Sbjct: 62 ICGICSALHGITYTRTVEKLFDTEIPERAQYIRVIVGELNRLHSHLLWLGLFADGFGFES 121
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
++ RE+++ ER G+R+ + + GGV +D+ E ++ + CDS + + +I
Sbjct: 122 LFYECWKYREEVLDVAERICGNRVIHSISKVGGVTRDLTKEHIDMLLKMCDSLETEIKNI 181
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ N KQR V + T+ + A+ G +G +RGSG A D+R++ ++ Y +L F
Sbjct: 182 EKVFVNNYTVKQRLVGLATLSKQVAYEVGTAGPTLRGSGNAIDVRETPDWDIYKDLGFKT 241
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
+ K GDCY R VR+ E+ S+ IIR ++++ V
Sbjct: 242 AVEKDGDCYARTKVRITELLNSLTIIRNAISKMPEGEIEVRVKGF--------------- 286
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
P GE E P+GE Y+ +G K R K+R P +A++ +
Sbjct: 287 -----------------PTGEAIMRTEQPRGEVIYYVKGNGTKKLERLKVRTPTFANIPS 329
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + G +LADV ++ ++D +R
Sbjct: 330 LLLMLPGVKLADVPIVVLTIDPCVSCTER 358
>gi|294634801|ref|ZP_06713326.1| hydrogenase-4 component G [Edwardsiella tarda ATCC 23685]
gi|291091792|gb|EFE24353.1| hydrogenase-4 component G [Edwardsiella tarda ATCC 23685]
Length = 566
Score = 319 bits (818), Expect = 5e-85, Method: Composition-based stats.
Identities = 102/389 (26%), Positives = 165/389 (42%), Gaps = 34/389 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVPYFDRL 68
+ GP H + L +DGE + D + +HRG EKL ET+ + + DR+
Sbjct: 178 IVPIGPLHITSDEPGHFRLFVDGEDIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 237
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+ AY +VE LGIE+P+R + IR + E+ R+ SHLLN+ VG
Sbjct: 238 CGICGFAHSTAYTSSVENALGIEVPLRAKAIRSILLEVERLHSHLLNLGLSCHFVGFDAG 297
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
+ F REK M E +G+R GG+ +D+ + + + +
Sbjct: 298 FMQFFRVREKSMKMAEILTGARKTYGLNLIGGIRRDMLKADMIATRQLAAEMRAEVKALI 357
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
D+L +QR V IG + + A + G M+R SG A D R P+ Y L +
Sbjct: 358 DILFSTPNIEQRTVGIGRLDPQIARDFSNVGPMVRASGHARDTRADHPFAGYDLLPMTVH 417
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
+ D R VR+ E+ ++ +I ++ L G
Sbjct: 418 SEQGCDVISRVKVRINEVFTALNMIEFGLDNLPGGP------------------------ 453
Query: 309 ESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
L EG++ VP EAP+G+ + ++ K YR + RA YA+
Sbjct: 454 --------LAVEGFNYVPHRFALGFTEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPT 505
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ ++ +G+ ++D I+GSLD + DR
Sbjct: 506 LRYMLRGNTVSDAPLIIGSLDPCYSCTDR 534
>gi|257387966|ref|YP_003177739.1| NADH-ubiquinone oxidoreductase chain 49kDa [Halomicrobium
mukohataei DSM 12286]
gi|257170273|gb|ACV48032.1| NADH-ubiquinone oxidoreductase chain 49kDa [Halomicrobium
mukohataei DSM 12286]
Length = 560
Score = 319 bits (817), Expect = 5e-85, Method: Composition-based stats.
Identities = 153/401 (38%), Positives = 219/401 (54%), Gaps = 32/401 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFL-QAV 62
+ +N GP HPA HGVL + LDGE + ++P IG LHR E++ + T+ Q +
Sbjct: 184 SDPDTMFVNIGPHHPATHGVLHIKTALDGEQIADLEPDIGYLHRCEEQMCQQGTYRHQIM 243
Query: 63 PYFDRLDYVA-PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
PY DR DY++ + E AYA A E L I++P Q+IR + +E+ RI +H+L V+T A+
Sbjct: 244 PYPDRWDYISAGLLNEWAYARAAEDLADIDVPDYAQVIRTMGAEMSRIAAHMLAVSTFAL 303
Query: 122 DV--GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP---ELVEDIGCW 176
D+ ++G +RE + E +G R+ YFR GGV D+P E E + +
Sbjct: 304 DINGDFTATFMYGIRDREVVQNLLEDLTGQRLMFNYFRLGGVAWDLPEPREEYFEKVRDF 363
Query: 177 CDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQP 236
D P L + DLLT N I + R V+ G + EDA +G +G + RGSG +DLR+ P
Sbjct: 364 VDGLPEKLTEYHDLLTNNEILQMRTVDTGVLPPEDAKSYGATGPVARGSGIDYDLRRDDP 423
Query: 237 YECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNK-VGPVSASDPK 295
Y Y ELD+D+ D + R LVRM E+ ES KII QCV+ L + + A+ P+
Sbjct: 424 YGYYDELDWDVVTEDGCDNFSRLLVRMREVEESAKIIEQCVDLLEDWPEDEREIQANVPR 483
Query: 296 IVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRC 355
+ P P E+Y AVE KGE G+Y+ SDG +KP R
Sbjct: 484 TLRPD------------------------PDREIYRAVEGAKGELGIYIRSDGTDKPARF 519
Query: 356 KIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
KIR+P +++L + + +G + D+ A LGSLDIV GEVDR
Sbjct: 520 KIRSPCFSNLHTLPTMSEGEYIPDMIASLGSLDIVLGEVDR 560
>gi|317485986|ref|ZP_07944841.1| respiratory-chain NADH dehydrogenase [Bilophila wadsworthia 3_1_6]
gi|316922759|gb|EFV43990.1| respiratory-chain NADH dehydrogenase [Bilophila wadsworthia 3_1_6]
Length = 362
Score = 319 bits (817), Expect = 5e-85, Method: Composition-based stats.
Identities = 116/393 (29%), Positives = 187/393 (47%), Gaps = 32/393 (8%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
++ SF++ GP H A + L++DGE V +V+ G +HRG E + + F +
Sbjct: 2 SQTSSFSLPIGPVHVALEEPVYFHLDVDGETVRKVEITSGHVHRGMEGMATQRNFFKNTT 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+R+ + + Y +AVE +LG+ P R Q +RVL E R+ SHL N+ A +V
Sbjct: 62 LTERVCSLCSNSHSLTYCMAVENVLGMTPPPRAQYLRVLAEETKRVASHLFNIAIFAHNV 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + L E RE + E G+RM+ + GGV D+ L + D+ A
Sbjct: 122 GFKSLFLHIMEVRENMQDVKETIYGNRMNLSANCIGGVKFDMDDSLTMYMLERLDTVEEA 181
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + + + + +R+ +G + EDAW G G + RGSG D+RK+ PY Y +L
Sbjct: 182 VKRVEKVFRTDPLIAKRSRGVGVLSREDAWALGVVGPVARGSGLDIDVRKNTPYLVYPDL 241
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
FDI + GD + R +VR+ E+ ES++++RQC+++L +
Sbjct: 242 YFDIVKEQDGDVWSRAMVRVREVFESIRLLRQCLDKLPDGPLAVHM-------------- 287
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+P E A EAP+GE YL ++G + P R K R P Y
Sbjct: 288 ------------------ERIPESESVARSEAPRGELIYYLQTNGTDTPARLKWRVPSYM 329
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +A+ + K QLAD+ I+ S+D +R
Sbjct: 330 NWEALTVMMKDCQLADIPVIVNSIDPCVSCTER 362
>gi|206895239|ref|YP_002247262.1| EchE [Coprothermobacter proteolyticus DSM 5265]
gi|206737856|gb|ACI16934.1| EchE [Coprothermobacter proteolyticus DSM 5265]
Length = 360
Score = 319 bits (817), Expect = 5e-85, Method: Composition-based stats.
Identities = 123/388 (31%), Positives = 187/388 (48%), Gaps = 30/388 (7%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
+ GP HPA + L+L+GE+V + IG +HR EK +TF++ + +R
Sbjct: 3 YKFPLGPYHPAFEEGEYIELQLEGEMVVDAEIKIGFIHRAIEKSATKRTFIRDLGLVERT 62
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+ + AY LAVEK G+E+P R + IRVL +E+ RI SHL+ + A +G T
Sbjct: 63 CGICSFHHSWAYCLAVEKAAGLEVPERAEYIRVLTAELERIHSHLMYLGAMAHKMGFDTL 122
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
++ + RE +M E SG+R++ A GGV +D+ + I ++ +
Sbjct: 123 FMFTWSGREAVMDMLELLSGNRVNYAINTLGGVRRDVDESISSQIKAALETLEDLGLKLK 182
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
D + + R N+G V ++A G G RGSG DLRK+ PY Y LDFD+
Sbjct: 183 DTWSKDASILARTKNVGIVSRKEAHLLGVVGPTARGSGIREDLRKTAPYAVYPLLDFDLV 242
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
+ GD + R VR++E+ ES+KIIRQ ++++ P
Sbjct: 243 VLDDGDVWSRTFVRVLEVLESIKIIRQVLDKMPAGQIKNPK------------------- 283
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
+ +V VEAP+GE +LI+DG +KP R KIR P +L A
Sbjct: 284 -----------PVLKIEPNDVIGRVEAPRGELAYHLITDGTDKPGRLKIRTPTLINLPAS 332
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVDR 396
E + +G LAD I+G +D +DR
Sbjct: 333 EHMMRGSNLADAPVIVGHIDPCMSCMDR 360
>gi|324497292|gb|ADY39447.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [bacterium
enrichment culture clone P24-9H]
Length = 569
Score = 319 bits (817), Expect = 6e-85, Method: Composition-based stats.
Identities = 100/392 (25%), Positives = 165/392 (42%), Gaps = 34/392 (8%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVPYF 65
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 178 KNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLS 237
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DR+ + AY +VE GI +P R Q+IR + E+ R+ SHLLN+ VG
Sbjct: 238 DRVCGICGFAHSTAYTTSVENGRGIVVPERAQMIRAILLEVERLHSHLLNLGLACHFVGF 297
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ + F RE M E +G+R GG+ +D+ + + +
Sbjct: 298 DSGFMQFFRVREASMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRLLAQQMRRDVQ 357
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 358 ELVDMLLSTPNIEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPM 417
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ + D R VR+ E+ ++ +I ++ L G
Sbjct: 418 TVHSEQGCDVISRLKVRINEVFTALNMIDFGLDNLPGGP--------------------- 456
Query: 306 RSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
L EG+ +P EAP+G+ + ++ K YR + RA YA+
Sbjct: 457 -----------LMVEGFTYIPNRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYAN 505
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ ++ +G+ ++D I+GSLD + DR
Sbjct: 506 WPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537
>gi|332999464|gb|EGK19049.1| formate hydrogenlyase subunit 5 [Shigella flexneri VA-6]
Length = 561
Score = 319 bits (817), Expect = 6e-85, Method: Composition-based stats.
Identities = 96/393 (24%), Positives = 164/393 (41%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 168 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 227
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 228 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 287
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
+ + F RE M E +G+R GG+ D+ + +
Sbjct: 288 AFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRHDLLKDDMIQTRQLAQQMRRE 347
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 348 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGLARDTRADHPFVGYGLL 407
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ ++ + ++ L GP+ +P + A
Sbjct: 408 PMEVHSEQGCDVISRLKVRINEVYTALNM----IDYGLDNLPGGPLMVEGFTYIPHRFAL 463
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 464 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 496
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 497 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 529
>gi|290790891|gb|ADD63147.1| NADH-plastoquinone oxidoreductase subunit 7 [Microlaena stipoides]
Length = 343
Score = 319 bits (817), Expect = 6e-85, Method: Composition-based stats.
Identities = 141/348 (40%), Positives = 195/348 (56%), Gaps = 5/348 (1%)
Query: 49 TEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGR 108
EK+ E +T +Q +PY R DY+A M E A E L I+IP R IRV+ E+ R
Sbjct: 1 MEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSR 60
Query: 109 ILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE 168
I SHLL + D+GA TP + F ERE + +E A+G RM YFR GGV D+P
Sbjct: 61 IASHLLWLGPFMADLGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYG 120
Query: 169 LVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAA 228
++ +CD F + + L+T N IF +R +G + E+A WG SG M+R SG
Sbjct: 121 WIDKCLDFCDYFLRGVVEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIE 180
Query: 229 WDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGP 288
WDLRK PYE Y++ D+ + K GD RYLVR+ EM+ES+KII+Q + ++ G GP
Sbjct: 181 WDLRKVDPYESYNQFDWKVQWQKEGDSLARYLVRIGEMKESIKIIQQAIEKIPG----GP 236
Query: 289 VSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG 348
+ + + E K + + + E+Y VEAPKGE G+YL+ D
Sbjct: 237 YENLEVRRFKNAKNSEWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDD 295
Query: 349 GNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
P+R KIR PG+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 296 SLFPWRWKIRPPGFINLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 343
>gi|257053294|ref|YP_003131127.1| NADH dehydrogenase (quinone) [Halorhabdus utahensis DSM 12940]
gi|256692057|gb|ACV12394.1| NADH dehydrogenase (quinone) [Halorhabdus utahensis DSM 12940]
Length = 419
Score = 319 bits (817), Expect = 7e-85, Method: Composition-based stats.
Identities = 103/387 (26%), Positives = 173/387 (44%), Gaps = 25/387 (6%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GPQHP+ L +DGE++ D + HRG E+ + +K++L+ + +R+
Sbjct: 9 EIPVGPQHPSLKEPANFTLTVDGEVITGADLKLSYNHRGIEQAVLSKSYLENIYLLERIC 68
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ ++A+ VE LL +++P R IR L E+ RI SH+L + ++G T
Sbjct: 69 GICSHAHTTSFAIGVEDLLDLDVPRRANYIRTLIGELERIHSHMLWLGVAGHEIGFDTLW 128
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ + +RE ++ E +G+R+H + GGV QD+ E E + D ++ +
Sbjct: 129 QYAWRDREIVLDLLEEITGNRIHYSINTIGGVRQDLTAEQRETVLEKMDELEERIDFYLE 188
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + R N+GTV E A + +G + R SG D+R+ PY Y E+DFD+
Sbjct: 189 TVPNEETVRMRCENVGTVSAELAREYCAAGPVGRASGLPVDVRRDAPYAAYDEMDFDVIT 248
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD R VR+ E+ ES+ IIRQ + + +
Sbjct: 249 DTAGDLLARTTVRIREIAESISIIRQAAADIPDGDLKASPKPVQALLA------------ 296
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
+P +V + EAP+GE Y+ +DG + P R IR P A+ +
Sbjct: 297 -------------QIPEDDVVSRYEAPRGELIHYIRADGTDTPERVHIRVPTLANWPTVV 343
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVDR 396
+G +AD ++ +D R
Sbjct: 344 EALRGSYIADTPIVVAGIDPCISCTSR 370
>gi|257053410|ref|YP_003131243.1| NADH-ubiquinone oxidoreductase chain 49kDa [Halorhabdus utahensis
DSM 12940]
gi|256692173|gb|ACV12510.1| NADH-ubiquinone oxidoreductase chain 49kDa [Halorhabdus utahensis
DSM 12940]
Length = 549
Score = 318 bits (816), Expect = 7e-85, Method: Composition-based stats.
Identities = 144/398 (36%), Positives = 209/398 (52%), Gaps = 32/398 (8%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFL-QAVPYF 65
+ +N GP HPA HGVL + L LDGE V +P IG +HR E++ E T+ Q +PY
Sbjct: 176 DTMLLNIGPHHPATHGVLHVQLTLDGETVVDAEPDIGYIHRCEEQMCEQGTYRHQIMPYP 235
Query: 66 DRLD-YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV- 123
DR D + E AYA + E L I++P Q++R + +E+ R+LSH L V A+DV
Sbjct: 236 DRWDWGGGGLLNEWAYARSAEDLADIDVPEYAQILRTMSAELSRMLSHFLAVGAYALDVI 295
Query: 124 -GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIP---PELVEDIGCWCDS 179
++ E+RE++ E +G R+ YFR GGV D+P +E + +
Sbjct: 296 GDFTATFMYAIEDRERIQSLLEDLTGQRLMFNYFRLGGVAWDLPQPRDAFLESVREFLAY 355
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
P L + DLL+ N I + R ++ G + A +G +G + RGSG +DLR+ PY
Sbjct: 356 LPDRLAEYHDLLSANEILQLRTLDTGHLDPNVAKSYGVTGPVARGSGIDYDLRRDDPYGY 415
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKV-GPVSASDPKIVP 298
Y ELD+ + D Y R LVRM E+ ES +I+ QC++ L + ++ P+ +
Sbjct: 416 YDELDWSVVTEDGCDNYARLLVRMRELEESARIVEQCLDLLADWPDDDRAIQSNVPRTLR 475
Query: 299 PKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
P+R E Y AVEA KGE G+Y+ SDG + P R KIR
Sbjct: 476 PER------------------------DAETYQAVEAAKGELGIYIRSDGTDSPARFKIR 511
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
P +++LQA+ + G +AD A LGSLD + GEVDR
Sbjct: 512 GPSFSNLQALPEMATGEYIADFIATLGSLDTIMGEVDR 549
>gi|315608359|ref|ZP_07883348.1| NADH-quinone oxidoreductase subunit C/D [Prevotella buccae ATCC
33574]
gi|315249989|gb|EFU29989.1| NADH-quinone oxidoreductase subunit C/D [Prevotella buccae ATCC
33574]
Length = 520
Score = 318 bits (816), Expect = 8e-85, Method: Composition-based stats.
Identities = 126/391 (32%), Positives = 201/391 (51%), Gaps = 29/391 (7%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
F IN GPQHP+ HGVLRL LDGE ++++ PH+G +HRG EK+ E+ T+ Q +
Sbjct: 159 DDDFVINIGPQHPSTHGVLRLQTILDGETIKKIYPHLGYIHRGIEKMCESYTYPQTLALT 218
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DR+DY++ M HA +E+ +G+E+ R + IR + E+ RI SHLL + A D+GA
Sbjct: 219 DRMDYLSAMQTRHALCGVIEEAMGVELSDRIKYIRTIMDELQRIDSHLLYLGCFAQDLGA 278
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
LT L+ +RE ++ E +G R+ Y+R GGV +DI P V+++ C +
Sbjct: 279 LTAFLYCMRDREHVLNVMEETTGGRLIQNYYRIGGVQEDIDPNFVQNVKTLCTYLKPMIQ 338
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ D+ N I R +G + ++ +G +G R S D+RK+ PY Y E+DF
Sbjct: 339 EYLDVFGDNVITHNRLEKVGVMDKKNCISYGVTGCSGRASDWRSDVRKNHPYALYGEVDF 398
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ + D RY R+ E+++S++II Q ++ + +
Sbjct: 399 EEVVCDTRDSMGRYYNRIAEIKQSIRIIEQLIDNIPEGDFYIKQK--------------- 443
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
VP G+ Y + E +GE GVYL S G PYR K+R G +
Sbjct: 444 --------------PVIKVPEGQWYFSTEGSRGEIGVYLDSRGDKSPYRLKLRPMGLNLV 489
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A++ +C+G ++AD+ + LD + ++DR
Sbjct: 490 AALDEMCRGEKVADLITVGAGLDYIIPDIDR 520
>gi|238755288|ref|ZP_04616632.1| Formate hydrogenlyase subunit 5 [Yersinia ruckeri ATCC 29473]
gi|238706522|gb|EEP98895.1| Formate hydrogenlyase subunit 5 [Yersinia ruckeri ATCC 29473]
Length = 574
Score = 318 bits (816), Expect = 8e-85, Method: Composition-based stats.
Identities = 103/397 (25%), Positives = 174/397 (43%), Gaps = 32/397 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+ + K+ S + GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 178 ISEAKAGSKIVPIGPLHVTSDEPGHFRLFVDGEDIIDADYRLFYVHRGMEKLAETRMGYN 237
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE +GI +P R Q+IR + E+ R+ SHLLN+
Sbjct: 238 EVTFLSDRVCGICGFTHSVAYTSSVENAMGIVVPERAQMIRSILLEVERLHSHLLNLGLA 297
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG + + F RE+ M E +G+R GG+ +DI + + S
Sbjct: 298 CHFVGFDSGFMQFFRIREQSMKMAEILTGARKTYGMNLIGGMRRDILKDDMIQTIALAGS 357
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
N + D+L +QR+V +G + + A + G M+RGSG D+R PY
Sbjct: 358 MRRDFNQLVDILLSTANTEQRSVGVGILDPQVARDFSNVGPMVRGSGHRRDMRHDHPYAG 417
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y++L F++ D Y R VR+ E+ ++ + + L GP+ +P
Sbjct: 418 YAKLPFELYSETGNDVYSRLKVRIHEVFNALNM----IEFGLQSLPSGPLMVEGFTYIPH 473
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
+ A EAP+G+ + ++ K +R + RA
Sbjct: 474 RFAL---------------------------GFAEAPRGDDIHWSMTGDNQKLFRWRCRA 506
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 507 ATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 543
>gi|325290169|ref|YP_004266350.1| ech hydrogenase subunit E [Syntrophobotulus glycolicus DSM 8271]
gi|324965570|gb|ADY56349.1| ech hydrogenase subunit E [Syntrophobotulus glycolicus DSM 8271]
Length = 360
Score = 318 bits (816), Expect = 8e-85, Method: Composition-based stats.
Identities = 107/391 (27%), Positives = 182/391 (46%), Gaps = 32/391 (8%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
I FGPQHP L L L L+ E V P IG +HRG EKL+E + F +
Sbjct: 2 GERTIIPFGPQHPVLPEPLHLDLILEDEKVVGAVPSIGFVHRGLEKLVEKRDFNEMAYVI 61
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
+R+ + Y VE ++G+EIP R + +R +++E+ RI SHLL + A G
Sbjct: 62 ERVCGICSFMHGQGYVQTVEGIMGVEIPDRAKYLRTIWAELSRIHSHLLWLGLMADAFGF 121
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ + + REK++ +E +G R+ + + GGV +DI + ++ I +
Sbjct: 122 ESLFMHCWRVREKVLDIFEETTGGRVIFSVCKVGGVWKDIDNDTLKRIVNVLKVVETETK 181
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+++ + + ++R +G + ++A+ G +G + RGSG A DLRK Y YS+L F
Sbjct: 182 ELTKVFVKDFTVQKRTKGVGVLTYKEAFELGAAGPVARGSGIAMDLRKLG-YAAYSDLSF 240
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ + K GDCY R VR+ E+ +++ +IRQ V R+ V +
Sbjct: 241 EPIVEKDGDCYARCNVRIGELFQAIDLIRQAVERIPDGEIEVKVKGN------------- 287
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
P GE + +E P+G+ Y +G R ++R P +A++
Sbjct: 288 ------------------PPKGEYMSRLEQPRGQVVYYARGNGTKFLDRVRVRTPTFANI 329
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + G LAD+ + ++D +R
Sbjct: 330 PPLLKMIPGSDLADIPILALTIDPCISCTER 360
>gi|198276153|ref|ZP_03208684.1| hypothetical protein BACPLE_02342 [Bacteroides plebeius DSM 17135]
gi|198270965|gb|EDY95235.1| hypothetical protein BACPLE_02342 [Bacteroides plebeius DSM 17135]
Length = 541
Score = 318 bits (816), Expect = 8e-85, Method: Composition-based stats.
Identities = 142/390 (36%), Positives = 204/390 (52%), Gaps = 29/390 (7%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
F +N GPQHP+ HGVLR+ L+GE + ++DP +G +HRG EK+ E+ T+ Q + D
Sbjct: 181 DDFVVNIGPQHPSTHGVLRMRTSLEGENIRKIDPILGYIHRGIEKMNESLTYPQTLALTD 240
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDY++ HA + +EK GIE+P R Q IR + E+ RI SHLL + MD+G L
Sbjct: 241 RLDYLSAHQNRHALCMCIEKAAGIEVPERAQYIRTIMDELQRIDSHLLFYSCLVMDMGGL 300
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP +GF ERE ++ +E +G R+ Y GGV DI P + + + S + D
Sbjct: 301 TPFFYGFREREMILDIFEETTGGRLIQNYNMIGGVQADIHPTFQQKVKDFIKHLRSVIQD 360
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
D+ T N I R +G + EDA G +G R SG A D+RK PY Y ++DF
Sbjct: 361 YHDIFTSNVIADTRLKGVGVLSKEDAISLGCTGGTGRASGWANDVRKHHPYALYDKVDFK 420
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ GD + RY+VRM E+ ES II Q ++ + G A I+
Sbjct: 421 EIVYTEGDSFARYMVRMDEIMESCHIIEQLIDNI----PEGEFRAKTKPII--------- 467
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+P G ++VE +GEF V L S G PYR R+ G +
Sbjct: 468 ----------------KLPEGVFTSSVETSRGEFDVILESHGDKVPYRLHYRSTGLPLVH 511
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AM+ +C+G ++AD+ AI G+LD V ++DR
Sbjct: 512 AMDTVCRGAKIADLIAIGGTLDFVIPDIDR 541
>gi|300713006|ref|YP_003738818.1| NADH dehydrogenase-like complex subunit CD [Halalkalicoccus
jeotgali B3]
gi|299126690|gb|ADJ17027.1| NADH dehydrogenase-like complex subunit CD [Halalkalicoccus
jeotgali B3]
Length = 548
Score = 318 bits (816), Expect = 8e-85, Method: Composition-based stats.
Identities = 152/401 (37%), Positives = 217/401 (54%), Gaps = 32/401 (7%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFL-QA 61
+ ++ + +N GP HP+ HGVL L LDGE V V+P IG +HR E++ + T+ Q
Sbjct: 173 EAETDTMFLNIGPHHPSTHGVLHLKTTLDGEQVIDVEPDIGYIHRCEEQMCQQGTYRHQI 232
Query: 62 VPYFDRLD-YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY DR D A + E AYA +E L I +P Q+IR L +E+ RILSHLL T A
Sbjct: 233 MPYPDRWDWGGAGLLNEWAYARVIEDLADITVPEYAQVIRTLSAELSRILSHLLATATYA 292
Query: 121 MDV--GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP---ELVEDIGC 175
+DV ++ F +RE + +G RM YFR GGV DIP E ED+
Sbjct: 293 LDVSGEFTATFMYCFRDRELVQDILTDLTGQRMMFNYFRVGGVAWDIPEPYEEFFEDVQT 352
Query: 176 WCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQ 235
+ + P L++ DLLT N +F+ R V G + + A +G +G ++RGSG +DLR+
Sbjct: 353 FINDLPRKLDEYHDLLTSNEVFQIRTVGTGELPPKIAKAYGATGPVVRGSGIDYDLRQDD 412
Query: 236 PYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPK 295
PY Y L++D+ D + R LVR+ E+ ES II QCV+ L PK
Sbjct: 413 PYGYYDRLNWDVITEDGCDNFSRVLVRLREIEESAAIIDQCVDLLA----------DWPK 462
Query: 296 IVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRC 355
+A+++R+++ P GE Y AVE KGE G+Y+ +DG P R
Sbjct: 463 GERTCQANVQRTLK---------------PSGECYRAVEGAKGELGIYIRADGTETPARF 507
Query: 356 KIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
KIR P +++L A+ + G +AD+ A LGSLD + GEVDR
Sbjct: 508 KIRGPSFSNLSALPAIANGEFVADLVATLGSLDAIMGEVDR 548
>gi|317486367|ref|ZP_07945195.1| respiratory-chain NADH dehydrogenase [Bilophila wadsworthia 3_1_6]
gi|316922356|gb|EFV43614.1| respiratory-chain NADH dehydrogenase [Bilophila wadsworthia 3_1_6]
Length = 358
Score = 318 bits (816), Expect = 9e-85, Method: Composition-based stats.
Identities = 109/389 (28%), Positives = 186/389 (47%), Gaps = 33/389 (8%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
I FGPQHP + L L +D E V P +G +HRG E L + + Q + +R
Sbjct: 3 RTIIPFGPQHPVLPEPIHLQLVMDNETVVEALPKLGYVHRGLETLTTLRDYNQMIYIVER 62
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ + + A+E L+ +E+P R +R+++SE+ R+ SHLL + A +G +
Sbjct: 63 VCGICSCIHALCFCRAIEHLMDVEVPRRAAYLRIIWSELHRMHSHLLWLGLFADALGFES 122
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
+ ++ RE++M E +G+R+ + GGV +D+ E I D+ + + +
Sbjct: 123 LFMQFWKIRERIMDINEATAGNRVIISTNIVGGVRKDLSREHQRWILDEMDTLEAEMRRL 182
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ + K+R V IG + ++A G +G +RGSG A D+R+++ YE ++EL F
Sbjct: 183 EKVTMEDYTVKKRTVGIGVMTAQEAIQLGAAGPTLRGSGVAQDVRQTE-YEAFAELGFTP 241
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
GDC+ R VR +E+ +S++I+RQ ++ L V +
Sbjct: 242 VSVLDGDCWARTKVRFLEVLQSMEIVRQAISHLPDTEINVKVKGN--------------- 286
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
P GEV + VE P+GE Y+ +G R +IR P +A++
Sbjct: 287 -----------------PSGEVISRVEQPRGECMYYVKGNGSKYLDRVRIRTPTFANIPP 329
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + KG QLADV ++ S+D +R
Sbjct: 330 LLHMVKGIQLADVPVVVLSIDPCISCTER 358
>gi|313126884|ref|YP_004037154.1| NADH dehydrogenase subunit d; NADH dehydrogenase subunit c
[Halogeometricum borinquense DSM 11551]
gi|312293249|gb|ADQ67709.1| NADH dehydrogenase subunit D; NADH dehydrogenase subunit C
[Halogeometricum borinquense DSM 11551]
Length = 558
Score = 318 bits (816), Expect = 9e-85, Method: Composition-based stats.
Identities = 157/402 (39%), Positives = 221/402 (54%), Gaps = 32/402 (7%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFL-QA 61
+ + +N GP HPA HGVL + LDGE V V+P IG LHR E++ +TKT+ Q
Sbjct: 181 DSEGDTMYLNIGPHHPATHGVLHVKTVLDGEQVAHVEPDIGYLHRCEEQMCQTKTYRHQI 240
Query: 62 VPYFDRLDYVAP-MNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY DR DY + + E AYA A E L I++P Q+IR + +E+ RI SH+L V T A
Sbjct: 241 MPYPDRWDYASSGLLNEWAYARAAEDLNDIDVPEYAQIIRTMGAELCRIASHMLAVGTFA 300
Query: 121 MDVG--ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP---ELVEDIGC 175
+DV ++ +RE + E +G RM YFR GGV D+P E E I
Sbjct: 301 LDVYGDFTAIFMYAMRDREIIQNILEDLTGQRMMFNYFRLGGVVWDLPEPREEFFEKIRD 360
Query: 176 WCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQ 235
+ D P+AL + DL++ N I + R ++ G + E A +G +G + RGSG +DLR+
Sbjct: 361 FLDDLPTALEEYHDLISSNEILQVRTIDTGVLPPEVAKSYGATGPVARGSGIDYDLRRDD 420
Query: 236 PYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNK-VGPVSASDP 294
PY Y ELD+D+ D Y R LVRM E+ ES KII+QCV+ L + + ++ P
Sbjct: 421 PYGYYDELDWDVVTEDGCDNYSRLLVRMREVEESAKIIQQCVDLLEDWPEDERTIQSNVP 480
Query: 295 KIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYR 354
+ + P+ E+Y AVEA KGE G+Y+ DG +KP R
Sbjct: 481 RTLRPEDDK------------------------EIYRAVEAAKGELGIYIRGDGTDKPGR 516
Query: 355 CKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
KIR+P +++LQ + + G + D+ A LGSLDIV GEVDR
Sbjct: 517 FKIRSPCFSNLQTLGEMSNGEYIPDMIASLGSLDIVLGEVDR 558
>gi|238788860|ref|ZP_04632651.1| Formate hydrogenlyase subunit 5 [Yersinia frederiksenii ATCC 33641]
gi|238723165|gb|EEQ14814.1| Formate hydrogenlyase subunit 5 [Yersinia frederiksenii ATCC 33641]
Length = 596
Score = 318 bits (815), Expect = 9e-85, Method: Composition-based stats.
Identities = 108/396 (27%), Positives = 173/396 (43%), Gaps = 32/396 (8%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQ 60
++ S S + GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 200 NEAGSSSRVVPIGPMHITSDEPGHFRLFVDGEDIIDADYRLFYVHRGMEKLAETRMGYND 259
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
DR+ + AY ++E LGI +P R Q+IR + E+ R+ SHLLN+
Sbjct: 260 VTFLSDRICGICGFTHSVAYTSSIENALGIIVPPRAQMIRTILLEVERLHSHLLNIGLSC 319
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
VG T + F REK M E +G+R GGV +DI
Sbjct: 320 HFVGFDTGFMQFFRVREKAMTIAEMLTGARKTYGLNLIGGVRRDILKADRLKTLQLVAEM 379
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ ++++ D+L +QR V +G + + A + G MIR SG A D+R PY Y
Sbjct: 380 RADISELVDMLMSTANIEQRTVGVGMLDRKVARDFSPVGPMIRASGFARDMRHDHPYANY 439
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+ + ++ + D + R LVR+ E +S+ +I +N + G GP+ P K
Sbjct: 440 ANIPKELFSLEGCDVHSRLLVRVREFFDSLVMIEYGLNHMPG----GPLLEEKVHYQPYK 495
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
A EAP+GE + ++ K +R + RA
Sbjct: 496 FAL---------------------------GFSEAPRGEDVHWSMTGDNQKLFRWRCRAA 528
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 529 TYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 564
>gi|332087442|gb|EGI92570.1| formate hydrogenlyase subunit 5 [Shigella boydii 5216-82]
Length = 569
Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats.
Identities = 97/393 (24%), Positives = 166/393 (42%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ + +
Sbjct: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 355
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 356 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ ++ + ++ L GP+ +P + A
Sbjct: 416 PMEVHSEQGCDVISRLKVRINEVYTALNM----IDYGLDNLPGGPLMVEGFTYIPHRFAL 471
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 472 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 504
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 505 NRPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537
>gi|76801791|ref|YP_326799.1| NADH dehydrogenase-like complex, subunit Cd [Natronomonas pharaonis
DSM 2160]
gi|76557656|emb|CAI49239.1| NADH dehydrogenase-like complex, subunit CD [Natronomonas pharaonis
DSM 2160]
Length = 556
Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats.
Identities = 152/401 (37%), Positives = 207/401 (51%), Gaps = 32/401 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFL-QAV 62
+S + +N GP HPA HGVL + LDGE + V+P IG LHR E++ + T+ Q +
Sbjct: 180 AESDTMLLNVGPHHPATHGVLHVKAVLDGEQIADVEPDIGYLHRCEEQMCQQSTYRHQIM 239
Query: 63 PYFDRLDYVA-PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
PY DR DYV+ + E AYA A E + IE+P Q+IR + +E+ RI SH+L + T A+
Sbjct: 240 PYPDRWDYVSAGILNEWAYARAAEDMADIEVPEYAQVIRTMSAELCRIASHMLALGTFAL 299
Query: 122 DVG--ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP---ELVEDIGCW 176
DV + F +RE + E +G R+ Y R GGV D+P E I +
Sbjct: 300 DVFGDFTAVFQYAFRDREVVQNILEDLTGQRLMFNYLRLGGVAWDVPEPREAFFEKIRDF 359
Query: 177 CDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQP 236
D P + +L+T N IF+ R VN G + A +G +G + RGSG DLR+ P
Sbjct: 360 LDDLPEKTKEYHNLITSNEIFQARCVNTGELPPAVAKQYGATGPVARGSGIDIDLRRDDP 419
Query: 237 YECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKI 296
Y Y ELD+D+ D Y R LVRM E+ ES KII QCV+ L
Sbjct: 420 YGYYEELDWDVVTEDGCDNYSRVLVRMREVEESAKIIEQCVDLL---------------- 463
Query: 297 VPPKRADMKRSMESLIHHFKLYTEGYHV-PVGEVYAAVEAPKGEFGVYLISDGGNKPYRC 355
+ E P EVY VEA KGE G+Y+ +DG +KP R
Sbjct: 464 --------EEWPEDDREIQSNVPRTLKPDPDTEVYRGVEAAKGELGIYMRADGTDKPARF 515
Query: 356 KIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
KIR+P + +L + + +G + D+ A LGSLDIV GEVDR
Sbjct: 516 KIRSPCFCNLHTLREMTEGEYIPDLIASLGSLDIVLGEVDR 556
>gi|288928300|ref|ZP_06422147.1| NADH dehydrogenase I, B/C/D subunit [Prevotella sp. oral taxon 317
str. F0108]
gi|288331134|gb|EFC69718.1| NADH dehydrogenase I, B/C/D subunit [Prevotella sp. oral taxon 317
str. F0108]
Length = 522
Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats.
Identities = 134/391 (34%), Positives = 205/391 (52%), Gaps = 29/391 (7%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ +N GPQHPA HGVLRL LDGE++ ++ PH+G +HRG EK+ E+ + Q + +
Sbjct: 161 DDDYVVNIGPQHPATHGVLRLQTILDGEVIRKIYPHLGYIHRGVEKISESYVYPQTLAFA 220
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DRLDY++ HA +E+ +G+E+ R + IR + E+ R+ SHLL + A DVGA
Sbjct: 221 DRLDYLSATMNRHALVGVIEEAMGVELTDRIKYIRTIMDELQRLDSHLLFYSCCAQDVGA 280
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
LT ++G +RE+++ E +G R+ Y+R GG DI P V+++ C
Sbjct: 281 LTAFIYGMRDREQVINVMEETTGGRLIMNYYRIGGCQADIDPNFVQNVKKLCAYMKPMFK 340
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ D+ TGN I + R +G + EDA +G +G R +G D+RK Y Y ++DF
Sbjct: 341 EYQDVFTGNVIMENRFKGVGMLSREDAISYGCTGGTGRAAGWQNDVRKHHSYGVYDKVDF 400
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+GD YDRY+VRM EM +SV I+ ++ + G I+
Sbjct: 401 KEITYNNGDSYDRYMVRMKEMEQSVHILETLIDNI----PEGDFYIKQKPII-------- 448
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
VP G+ Y + E +GE GV+L S G PYR K R G +
Sbjct: 449 -----------------KVPEGQWYFSCEGSRGEIGVFLDSKGDKSPYRLKFRPMGLPLV 491
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A++ + +G ++AD+ A+ SLD V ++DR
Sbjct: 492 SALDTMLRGEKIADLIAVGASLDYVIPDIDR 522
>gi|330900627|gb|EGH32046.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas syringae pv. japonica str. M301072PT]
Length = 353
Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats.
Identities = 138/356 (38%), Positives = 204/356 (57%), Gaps = 4/356 (1%)
Query: 41 HIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIR 100
IG HRG EK+ E +++ +PY DR+DY+ + Y L+VEKL GI++P + +IR
Sbjct: 2 DIGYHHRGAEKMAERQSWHSFIPYTDRIDYLGGVMNNLPYVLSVEKLAGIKVPEKVDVIR 61
Query: 101 VLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGG 160
++ +E RI SHLL + T DVGA+TP + F +R+K E +G R+H A++R GG
Sbjct: 62 IMMAEFFRITSHLLFLGTYIQDVGAMTPVFFTFTDRQKAYTVIEAITGFRLHPAWYRIGG 121
Query: 161 VHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGV 220
V D+P + + + D P L++ + N I K R V + ++A WG +G
Sbjct: 122 VAHDLPRGWEKLVKDFVDWLPKRLDEYTKAALQNSILKGRTVGVAAYNTKEALEWGVTGA 181
Query: 221 MIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRL 280
+R G +DLRK++PY Y +F++P+ +GD YDR +VR+ EMR+S+KII QC+ +
Sbjct: 182 GLRSPGCDFDLRKARPYSGYENFEFEVPLAANGDAYDRCMVRVEEMRQSIKIIDQCMRNM 241
Query: 281 LGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEF 340
GP A P PP + + +E+LI HF + G +P E + +EA KG
Sbjct: 242 ----PEGPYKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGIN 297
Query: 341 GVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YL SDGG YR +IR P Y HLQ + + KG +AD+ A LGS+D V +VDR
Sbjct: 298 SYYLTSDGGTMSYRTRIRTPSYPHLQQIPSVIKGSMVADLIAYLGSIDFVMADVDR 353
>gi|261879875|ref|ZP_06006302.1| proton-translocating NADH-quinone oxidoreductase [Prevotella
bergensis DSM 17361]
gi|270333468|gb|EFA44254.1| proton-translocating NADH-quinone oxidoreductase [Prevotella
bergensis DSM 17361]
Length = 524
Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats.
Identities = 128/392 (32%), Positives = 200/392 (51%), Gaps = 29/392 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
F +NFGP HP+ HGVLRL ++GE ++ V PH+G +HRG EK++E T+ Q +
Sbjct: 162 DKDDFVMNFGPNHPSTHGVLRLQTVVNGETIKDVYPHLGYIHRGMEKMMEEMTYPQTLAL 221
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRL+Y+ M+ HA +E+ +GIE+ R Q IR + E+ RI +HLL + T A D+
Sbjct: 222 TDRLNYLCAMHHRHALVGVIEEAMGIELSDRIQYIRTIMDELQRIDNHLLYLGTCAQDLS 281
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
ALT L+ +RE L+ E +G R+ Y+R GG+ DI P VE++ +C +
Sbjct: 282 ALTAFLYCMRDREHLLNVMEETTGGRLIQNYYRIGGLQDDIDPNFVENVKTFCKYMRPMV 341
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ D+ N I R +G + L D + +G R +G D+RK+ PY Y++++
Sbjct: 342 QEYLDVFGDNVITHLRLKGVGPMDLADCINYAVTGPAGRAAGWHNDVRKNHPYALYNKVE 401
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F +G D +RY++ + E+ +S+ II Q ++ + +
Sbjct: 402 FKEVVGTGADSLERYMIHIQEIYQSLDIIEQLIDNIPEGDFYIKQK-------------- 447
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
VP G+ Y +VE GEFGVYL S G PYR K+R G
Sbjct: 448 ---------------PVIKVPEGQWYFSVEGGAGEFGVYLDSRGDKSPYRVKMRPMGLTL 492
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A + + KG ++AD+ A ++D V ++DR
Sbjct: 493 AGAFDKMLKGQKIADLVATGAAIDFVIPDLDR 524
>gi|307353717|ref|YP_003894768.1| NADH-ubiquinone oxidoreductase subunit 49kDa [Methanoplanus
petrolearius DSM 11571]
gi|307156950|gb|ADN36330.1| NADH-ubiquinone oxidoreductase chain 49kDa [Methanoplanus
petrolearius DSM 11571]
Length = 412
Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats.
Identities = 116/401 (28%), Positives = 185/401 (46%), Gaps = 30/401 (7%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+K K +TI GP HPA + +++GE +E VD G HRG E + + +Q
Sbjct: 4 NKSKKAPYTIPIGPTHPALKEPILFTFKINGEAIEEVDFAPGKAHRGIEWMGMRRNPVQI 63
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
V DR+ + ++ A+A AVE++ GIE+P R IR + +E RI SHLL A
Sbjct: 64 VHLTDRICGICGVSHTFAFAKAVEQIAGIEVPDRAHYIRTILAEFERIQSHLLWAGVAAH 123
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
++G T + RE+ M E +G+R++ A + GGV +DI E I +
Sbjct: 124 ELGFDTLFNLAWRVREESMDLIELLTGNRVNYAIVQVGGVRRDIEEEKFARIEEGLQYYE 183
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
++ + L ++ R + G + E + G R SG D+R PY Y
Sbjct: 184 GLISKLLKLFLHDKTITMRCRDCGILTREASLKLCTVGPTSRASGVKMDVRLDSPYGAYG 243
Query: 242 ELDFDIPI------GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPK 295
+LDFD + GD YDR +VR++E+ +SV +IRQC+ ++ + PK
Sbjct: 244 DLDFDYVMPDQYTGETRGDVYDRIVVRLLEVAQSVDLIRQCLKQIPEGETLWETKM--PK 301
Query: 296 IVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRC 355
++ + GE VEAP+GE Y+ + + PY
Sbjct: 302 LLATCKKA----------------------EGEAVGRVEAPRGECLHYVRMNKSDAPYMW 339
Query: 356 KIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
K++A Y++ + + KG Q+AD+ I+ S+D DR
Sbjct: 340 KVKASTYSNQLSWLEILKGEQIADIPIIVASIDPCMSCTDR 380
>gi|126178310|ref|YP_001046275.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Methanoculleus
marisnigri JR1]
gi|125861104|gb|ABN56293.1| ech hydrogenase subunit E [Methanoculleus marisnigri JR1]
Length = 359
Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats.
Identities = 109/390 (27%), Positives = 179/390 (45%), Gaps = 33/390 (8%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+ FGPQHP + L L L+ E V P IG +HRG E+L++ + + + V +
Sbjct: 3 ERIIVPFGPQHPVLPEPIHLDLVLEDEKVVEAIPSIGYIHRGLERLVQKREYTEYVYVAE 62
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+ + Y+ VE ++ IE+P R + +R ++SE RI SHLL + A +G
Sbjct: 63 RICGICSFIHALCYSQGVEHIMKIEVPDRARYLRTIWSECSRIHSHLLWLGLFADGMGFE 122
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
+ ++ RE ++ E +G R+ + GGV +DI E ++++ D F D
Sbjct: 123 NLFMRSWQLRESVLDVLEDTTGGRVIQGTCKVGGVRRDIGQEKLDEMHRTLDPFEQQCRD 182
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ D+ + K R +G + ++A+ G +G RGSG A D R++ Y Y +L F
Sbjct: 183 LGDVFLNDDTVKYRLKGLGVISKDEAYDLGAAGPTARGSGVAMDHRETG-YAAYGDLGFK 241
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ GDCY R VR+ E+ S+ +IR+ + + V +
Sbjct: 242 PVVETTGDCYARCAVRVKEVYASIDLIRRAIEEMPEGPIDVKVKGT-------------- 287
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
P GE ++ E P+GE YL DG R +IR P A++
Sbjct: 288 ------------------PDGEYFSRAEQPRGEVIHYLKGDGSKHLARARIRTPTLANIP 329
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + G QLADV ++ S+D G ++R
Sbjct: 330 PLVKMLPGIQLADVPVVVLSIDPCIGCMER 359
>gi|281424344|ref|ZP_06255257.1| NADH dehydrogenase I, B/C/D subunit [Prevotella oris F0302]
gi|281401613|gb|EFB32444.1| NADH dehydrogenase I, B/C/D subunit [Prevotella oris F0302]
Length = 523
Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats.
Identities = 133/392 (33%), Positives = 200/392 (51%), Gaps = 29/392 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
F +N GP HP+ HGVLRL LDGE V+ + PH+G +HRG EK+ E+ T+ Q + +
Sbjct: 161 DEDDFIVNLGPNHPSMHGVLRLQTVLDGETVKHIYPHLGYIHRGMEKMCESMTYPQTLAF 220
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRL+Y+ M HA +E+ +GIE+ R Q IR + E+ RI +HLL + T A D+
Sbjct: 221 TDRLNYLCAMMHRHALVGVIEEGMGIELSDRIQYIRTIMDELQRIDNHLLFLGTCAQDLS 280
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
ALT L+ +RE ++ E +G R+ Y+R GG+ DI P V+++ C +
Sbjct: 281 ALTAFLYCMRDREHVLNVMEETTGGRLIQNYYRIGGLQDDIDPNFVQNVKTLCKYLRPMV 340
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ D+ N I QR +G + LED + +G R +G D+RK+ PY YS++D
Sbjct: 341 QEYLDVFGDNVITHQRLEGVGPMNLEDCINYAVTGPAGRAAGWHNDVRKNHPYAMYSKVD 400
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F+ D RY+V + E+ +S+ II Q ++ + G I+
Sbjct: 401 FEEVTLTGADSMARYMVHIKEIYQSLNIIEQLIDNI----PEGEFYIKQKPII------- 449
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
VP G+ + +VE GEFGVYL S G PYR K+R G
Sbjct: 450 ------------------KVPEGQWFFSVEGGAGEFGVYLDSRGDKSPYRLKMRPMGLTL 491
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A + + KG +LAD+ A ++D V ++DR
Sbjct: 492 TGAFDKMLKGQKLADLVATGAAIDFVIPDIDR 523
>gi|258590788|emb|CBB97125.1| hydrogenase 3 large subunit [Enterobacter radicincitans]
Length = 569
Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats.
Identities = 99/393 (25%), Positives = 167/393 (42%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIVDADYRMFYVHRGMEKLAETRMGYNEVTF 235
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI +P R Q+IR + E+ R+ SHLLN+ V
Sbjct: 236 LSDRVCGICGFAHSTAYTTSVENAMGIVVPERAQMIRAILLEVERLHSHLLNLGLACHFV 295
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ + +
Sbjct: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDMLKDDMVQTRALAQQMRRD 355
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + + A + G M+R SG A D R P+ Y L
Sbjct: 356 VMELVDVLMSTPNIEQRTVGIGRLDPQIARDFSNVGPMVRASGHARDTRADHPFAGYGLL 415
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+ + D R VR+ E+ ++ +I ++ L G GP+ +P + A
Sbjct: 416 PMTVHSEQGCDVISRLKVRINEVLTALNMIDFGLDNLPG----GPLMVEGFTYIPHRFAL 471
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 472 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 504
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 505 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537
>gi|73748669|ref|YP_307908.1| hydrogenase, group 4, EchE subunit [Dehalococcoides sp. CBDB1]
gi|289432695|ref|YP_003462568.1| NADH-ubiquinone oxidoreductase chain 49kDa [Dehalococcoides sp. GT]
gi|73660385|emb|CAI82992.1| hydrogenase, group 4, EchE subunit [Dehalococcoides sp. CBDB1]
gi|288946415|gb|ADC74112.1| NADH-ubiquinone oxidoreductase chain 49kDa [Dehalococcoides sp. GT]
Length = 359
Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats.
Identities = 111/390 (28%), Positives = 176/390 (45%), Gaps = 34/390 (8%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
I FGPQHP ++L LE + E V V P IG +HRG EK E T Q + +R
Sbjct: 3 RTVIPFGPQHPVFPEPVQLKLECEDETVVGVTPVIGYVHRGVEKACELNTLRQNIFLVER 62
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ + + Y +E+L IEIP R Q +R ++E+ R+ SH L + A +G +
Sbjct: 63 ICGICSIQHALCYCQGIEELANIEIPQRAQYLRTAWAELSRLHSHSLWLGLLADALGFES 122
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND- 186
+ + RE ++ E +G R+ + GGV +DI E+++ F ++
Sbjct: 123 LFMQIWRAREIILDILEITAGHRVITSACVVGGVRRDIDAEMLKKTEAMLGDFRKMMDKT 182
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
I L + K+R V G + + A G G +RGSG D+R + Y + EL F+
Sbjct: 183 ILPTLLNDPTLKKRTVGKGILSYDQAVTLGACGPTMRGSGVPSDVRSTG-YAAFKELGFE 241
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ GD Y R LVR E+ +S+ + ++++ +AD
Sbjct: 242 PVVETAGDSYARTLVRTRELYQSIDLTLAALHQMPAGEI-------------MVKADAY- 287
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
P GE++ VE P+GE Y+ ++G N RCKIR P +A++
Sbjct: 288 ------------------PEGEIFTRVEQPRGELTYYIKANGTNHLDRCKIRTPTFANIP 329
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + G +LADV I S+D +R
Sbjct: 330 TLLVMLPGCELADVPVITLSIDPCISCTER 359
>gi|238793446|ref|ZP_04637071.1| Formate hydrogenlyase subunit 5 [Yersinia intermedia ATCC 29909]
gi|238727219|gb|EEQ18748.1| Formate hydrogenlyase subunit 5 [Yersinia intermedia ATCC 29909]
Length = 606
Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats.
Identities = 107/396 (27%), Positives = 169/396 (42%), Gaps = 32/396 (8%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQ 60
++ S S + GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 210 NEAGSSSRVVPIGPMHITSDEPGHFRLFVDGEDIIDADYRLFYVHRGMEKLAETRMGYND 269
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
DR+ + AY ++E LGI +P R Q+IR + E+ R+ SHLLN+
Sbjct: 270 VTFLSDRICGICGFTHSVAYTSSIENALGIIVPPRAQMIRTILLEVERLHSHLLNIGLSC 329
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
VG T + F REK M E +G+R GGV +DI
Sbjct: 330 HFVGFDTGFMQFFRVREKAMTIAEMLTGARKTYGLNLIGGVRRDILKADRIKTLQLVSEM 389
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ + + D+L +QR V +G + + A + G MIR SG A D+R Y Y
Sbjct: 390 RADIGQLVDMLMSTANIEQRTVGVGLLDRKIARDFSPVGPMIRASGYARDMRHDHSYANY 449
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+ + ++ D + R LVR+ E +S+ +I +N + G GP+ P K
Sbjct: 450 ANVPKELFTLDGCDVHSRLLVRVREFFDSLVMIEYGLNHMPG----GPLLEEKVNYQPYK 505
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
A EAP+GE + ++ K +R + RA
Sbjct: 506 FAL---------------------------GFSEAPRGEDVHWSMTGDNQKLFRWRCRAA 538
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 539 TYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 574
>gi|124647855|gb|ABM06162.1| NADH dehydrogenase subunit 7 [Haplomitrium mnioides]
Length = 305
Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats.
Identities = 191/309 (61%), Positives = 236/309 (76%), Gaps = 4/309 (1%)
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKL 139
Y+LAVE+L E+P R Q IRVL+ EI RIL+HLL +TT AMDVGALTP LW FEEREKL
Sbjct: 1 YSLAVERLCNCEVPPRAQYIRVLFCEITRILNHLLALTTHAMDVGALTPFLWAFEEREKL 60
Query: 140 MVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQ 199
+ FYER SG+RMHA+Y RPGGV QD+P L EDI + F S ++++ ++LT NRI+KQ
Sbjct: 61 LEFYERVSGARMHASYIRPGGVAQDLPLGLSEDIFLFTQQFASRIDELEEMLTNNRIWKQ 120
Query: 200 RNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRY 259
R V+IGTV + A WGFSGVM+RGSG WDLRKS PY+ Y LDFD+P+G GDCYDRY
Sbjct: 121 RLVDIGTVTAQQAVDWGFSGVMLRGSGVCWDLRKSAPYDVYDRLDFDVPVGTRGDCYDRY 180
Query: 260 LVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYT 319
+R+ EMR+S++II QC+N++ G + A D K+ PP R+ MK+SMESLIHHFKLYT
Sbjct: 181 CIRIEEMRQSIRIIMQCLNQM----PSGVIKADDRKLCPPSRSQMKQSMESLIHHFKLYT 236
Query: 320 EGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLAD 379
EG VP Y AVEAPKGEFGV+L+S+G N+PYRCKIRAPG+AHLQ ++F+ K H LAD
Sbjct: 237 EGVSVPASSTYTAVEAPKGEFGVFLVSNGTNRPYRCKIRAPGFAHLQGLDFMSKHHMLAD 296
Query: 380 VSAILGSLD 388
V ILG+ D
Sbjct: 297 VVTILGTQD 305
>gi|238799241|ref|ZP_04642688.1| Formate hydrogenlyase subunit 5 [Yersinia mollaretii ATCC 43969]
gi|238716906|gb|EEQ08775.1| Formate hydrogenlyase subunit 5 [Yersinia mollaretii ATCC 43969]
Length = 601
Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats.
Identities = 108/396 (27%), Positives = 170/396 (42%), Gaps = 32/396 (8%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQ 60
++ S S + GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 205 NEAGSSSRVVPIGPMHITSDEPGHFRLFVDGEDIIDADYRLFYVHRGMEKLAETRMGYND 264
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
DR+ + AY ++E LGI +P R Q+IR + E+ R+ SHLLN+
Sbjct: 265 VTFLSDRICGICGFTHSVAYTSSIENALGIIVPPRAQMIRTILLEVERLHSHLLNIGLSC 324
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
VG T + F REK M E +G+R GGV +DI
Sbjct: 325 HFVGFDTGFMQFFRVREKAMTIAEMLTGARKTYGLNLIGGVRRDILKADRLKTLQLVAEM 384
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ + + D+L +QR V +G + + A + G MIR SG A D+R PY Y
Sbjct: 385 RADIGQLVDMLMSTANIEQRTVGVGLLDRKIARDFSPVGPMIRASGYARDMRHDHPYANY 444
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+ + ++ + D R LVR+ E +S+ +I +N + G GP+ P K
Sbjct: 445 ANVPKELFSLEGCDVNSRLLVRVREFFDSLVMIEYGLNHMPG----GPLLEEKVHYQPYK 500
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
A EAP+GE + ++ K +R + RA
Sbjct: 501 FAL---------------------------GFSEAPRGEDVHWSMTGDNQKLFRWRCRAA 533
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 534 TYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 569
>gi|299140924|ref|ZP_07034062.1| NADH dehydrogenase I, B/C/D subunit [Prevotella oris C735]
gi|298577890|gb|EFI49758.1| NADH dehydrogenase I, B/C/D subunit [Prevotella oris C735]
Length = 523
Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats.
Identities = 133/392 (33%), Positives = 200/392 (51%), Gaps = 29/392 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
F +N GP HP+ HGVLRL LDGE V+ + PH+G +HRG EK+ E+ T+ Q + +
Sbjct: 161 DEDDFIVNLGPNHPSMHGVLRLQTVLDGETVKHIYPHLGYIHRGMEKMCESMTYPQTLAF 220
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRL+Y+ M HA +E+ +GIE+ R Q IR + E+ RI +HLL + T A D+
Sbjct: 221 TDRLNYLCAMMHRHALVGVIEEGMGIELSDRIQYIRTIMDELQRIDNHLLFLGTCAQDLS 280
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
ALT L+ +RE ++ E +G R+ Y+R GG+ DI P V+++ C +
Sbjct: 281 ALTAFLYCMRDREHVLNVMEETTGGRLIQNYYRIGGLQDDIDPNFVQNVKTLCKYLRPMV 340
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ D+ N I QR +G + LED + +G R +G D+RK+ PY YS++D
Sbjct: 341 QEYLDVFGDNVITHQRLEGVGPMNLEDCINYAVTGPAGRAAGWHNDVRKNHPYAMYSKVD 400
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F+ D RY+V + E+ +S+ II Q ++ + G I+
Sbjct: 401 FEEVTLTGADSMARYMVHIKEIYQSLNIIEQLIDNI----PEGEFYIKQKPII------- 449
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
VP G+ + +VE GEFGVYL S G PYR K+R G
Sbjct: 450 ------------------KVPEGQWFFSVEGGAGEFGVYLDSRGDKSPYRLKMRPMGLTL 491
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A + + KG +LAD+ A ++D V ++DR
Sbjct: 492 TGAFDKMLKGQKLADLVATGAAIDFVIPDIDR 523
>gi|290790824|gb|ADD63081.1| NADH-plastoquinone oxidoreductase subunit 7 [Potamophila
parviflora]
Length = 343
Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats.
Identities = 143/348 (41%), Positives = 194/348 (55%), Gaps = 5/348 (1%)
Query: 49 TEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGR 108
EK+ E +T +Q +PY R DY+A M E A E L I+IP R IRV+ E+ R
Sbjct: 1 MEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSR 60
Query: 109 ILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE 168
I SHLL + D+GA TP + F ERE + +E A+G RM YFR GGV D+P
Sbjct: 61 IASHLLWLGPFMADLGAQTPFFFIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYG 120
Query: 169 LVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAA 228
+E +CD F + + L+T N IF +R +G + E+A WG SG M+R SG
Sbjct: 121 WIEKCLDFCDYFLRGVVEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQ 180
Query: 229 WDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGP 288
WDLRK PYE Y++ D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP
Sbjct: 181 WDLRKVDPYESYNQFDWKVQWQKEGDSLARYLVRIGEMRESIKIIQQAVEKIPG----GP 236
Query: 289 VSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG 348
+ + + E K + + + E+Y VEAPKGE G+YL+ D
Sbjct: 237 YENLEVRRFKKAKNSEWNDFE-YRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDD 295
Query: 349 GNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
P+R IR PG+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 296 SLFPWRWNIRPPGFINLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 343
>gi|157370670|ref|YP_001478659.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Serratia
proteamaculans 568]
gi|157322434|gb|ABV41531.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Serratia
proteamaculans 568]
Length = 567
Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats.
Identities = 103/388 (26%), Positives = 171/388 (44%), Gaps = 32/388 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVPYFDRL 68
+ GP H + L +DGE + D + +HRG EKL ET+ + + DR+
Sbjct: 180 VVPIGPLHITSDEPGHFRLFVDGEDIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 239
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+ AY +VE +GI++P R Q+IR + E+ R+ SHLLN+ VG +
Sbjct: 240 CGICGFTHSVAYTSSVENAMGIQVPERAQMIRSVLLEVERLHSHLLNLGLACHFVGFDSG 299
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
+ F RE+ M E +G+R GG+ +DI + + S L D+
Sbjct: 300 FMQFFRVREQSMKMAEILTGARKTYGLNLIGGIRRDILKDDMLQTLRLAAQMRSELVDLV 359
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
D+L +QR+V +G + + A + G MIRGSG D R P+ Y++L ++
Sbjct: 360 DILLSTPNTEQRSVGVGRLDPQVARDYSNVGPMIRGSGHRRDTRIDHPFAGYAKLPVELC 419
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
+ D Y R VR+ E+ S+ I + L GP++ +P + A
Sbjct: 420 VEDGCDVYSRLKVRIHEVFNSLGI----IEFGLQSLPSGPLAVDGFTYIPHRFAL----- 470
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
EAP+G+ + ++ K +R + RA YA+ +
Sbjct: 471 ----------------------GFAEAPRGDDIHWSMTGDNQKLFRWRCRAATYANWPTL 508
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ +G+ ++D I+GSLD + DR
Sbjct: 509 RYMLRGNTVSDAPLIIGSLDPCYSCTDR 536
>gi|270308171|ref|YP_003330229.1| hydrogenase, EchE subunit [Dehalococcoides sp. VS]
gi|270154063|gb|ACZ61901.1| hydrogenase, EchE subunit [Dehalococcoides sp. VS]
Length = 359
Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats.
Identities = 110/390 (28%), Positives = 176/390 (45%), Gaps = 34/390 (8%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
I FGPQHP ++L LE + E V V P IG +HRG EK E T Q + +R
Sbjct: 3 RTVIPFGPQHPVFPEPVQLKLECEDETVVGVTPVIGYVHRGVEKACEINTLRQNIFLVER 62
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ + + Y +E+L GIE+ R +R ++E+ R+ SH L + A +G +
Sbjct: 63 ICGICSIQHALCYCQGIEELAGIEVSQRAHYLRTAWAELSRLHSHSLWLGLLADALGFES 122
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND- 186
+ + RE ++ E +G R+ + GGV +DI E+++ F ++
Sbjct: 123 LFMQIWRAREIILDILEMTAGHRVITSACVVGGVRRDIDNEMLKKTENMLGEFRKMMDKT 182
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
I L + K+R V G + + A G G +RGSG + D+R + Y + EL F+
Sbjct: 183 ILPTLLNDPTLKKRTVGKGILSYDQAITLGSCGPTMRGSGVSSDVRSTG-YAAFKELGFE 241
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ GD Y R LVR E+ +S+ + ++++ +AD
Sbjct: 242 PVVETAGDSYARTLVRTRELYQSIDLTLAALHQMPAGEI-------------MVKADAY- 287
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
P GEV+ VE P+GE Y+ ++G N RCKIR P +A++
Sbjct: 288 ------------------PEGEVFTRVEQPRGELTYYIKANGTNHLDRCKIRTPTFANIP 329
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + G +LADV I S+D +R
Sbjct: 330 TLLVMLPGCELADVPVITLSIDPCISCTER 359
>gi|261416728|ref|YP_003250411.1| NADH dehydrogenase (quinone) [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261373184|gb|ACX75929.1| NADH dehydrogenase (quinone) [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 379
Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats.
Identities = 140/395 (35%), Positives = 217/395 (54%), Gaps = 30/395 (7%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K + F IN GPQHP+ HG LRL L +DGE + V PH G +HRG EK E+ ++LQ +
Sbjct: 14 KSNTEEFFINMGPQHPSTHGALRLTLRMDGETIVEVVPHFGYIHRGMEKQAESMSYLQYI 73
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
DR DY+ + +A+EK + + +P+RG+ IRV+ E+GRI SHL+ D
Sbjct: 74 AMSDRQDYLTAIQNNLGVVIALEKGMNVGVPLRGEYIRVMLQELGRIASHLVFYGCFGGD 133
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+G T L+GF+ERE + E +GSR+ +FRPGG D+P + + + D
Sbjct: 134 LGGQTCLLFGFKEREMIHDILEEVTGSRLTTNFFRPGGSRYDVPDTFIPRVKAFLDHMED 193
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ D L+ N I +R++ IG + EDA +G SG ++R SG +D+R++ PY Y +
Sbjct: 194 TMKDYERFLSKNIIVLERSIGIGVLSKEDAIAYGCSGPVLRASGVNFDVRRANPYSIYDQ 253
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
LDFD+P+ +GDCYDRY +R+ E+ ES+KI+RQCV + + +
Sbjct: 254 LDFDVPVFHNGDCYDRYKIRIAEIHESMKILRQCVEKFPTEGP------------WRSKE 301
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGN-KPYRCKIRAPG 361
+ +PVG Y+ +E KG + Y+++ KPYR R P
Sbjct: 302 -----------------KPVRLPVGRYYSEIETAKGLYATYVVAATTGEKPYRIHTRGPS 344
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ H+ A+ + +GH+++D+ I+ +LD V E+DR
Sbjct: 345 FPHIAAINKMAQGHKISDLVTIMATLDPVIPEIDR 379
>gi|294674398|ref|YP_003575014.1| proton-translocating NADH-quinone oxidoreductase D subunit
[Prevotella ruminicola 23]
gi|294471795|gb|ADE81184.1| putative proton-translocating NADH-quinone oxidoreductase, D
subunit [Prevotella ruminicola 23]
Length = 521
Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats.
Identities = 130/392 (33%), Positives = 199/392 (50%), Gaps = 29/392 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ + IN GPQHPA HGVLRL LDGE V+R+ PH G +HRG EK+ E T+ Q +
Sbjct: 159 EADDYVINIGPQHPATHGVLRLQTVLDGETVKRIYPHFGYIHRGIEKMWEGMTYPQTLAL 218
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRL+Y+ M HA +E+ + +E+ R + IR + E+ R+ SHLL + A D+G
Sbjct: 219 TDRLNYLGAMQHRHALVGVIEEAMEVELTDRIKYIRTIMDELQRLDSHLLYTSCVAQDLG 278
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
ALT L+G +RE ++ E +G R+ Y+R GG+ DI P V ++ +
Sbjct: 279 ALTAFLYGMRDREHVLNCMEETTGGRLIQNYYRIGGLQDDIDPNFVSNVKALVKYLRPMI 338
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ D+ N I R G + LED + +G R SG D+RK+ PY+ Y +++
Sbjct: 339 QEYMDVFGDNVITHNRLEKCGPMSLEDCISYAVTGPAGRASGWKSDVRKNHPYDMYDKVE 398
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
++ D DRYLV + EM +S+ II Q ++ + +
Sbjct: 399 WEQCTLTGCDSMDRYLVHINEMYQSLNIIEQLIDNIPEGDFYVKQK-------------- 444
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
VP G+ Y +VE GEFGVYL S G PYR K+R G +
Sbjct: 445 ---------------PIIKVPEGQWYYSVEGVAGEFGVYLDSRGDKSPYRMKMRPMGLSL 489
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ A + + +G ++AD+ A ++D+V ++DR
Sbjct: 490 VGAFDPMLRGQKIADLIATCAAIDVVIPDIDR 521
>gi|332881563|ref|ZP_08449212.1| respiratory-chain NADH dehydrogenase, subunit [Capnocytophaga sp.
oral taxon 329 str. F0087]
gi|332680561|gb|EGJ53509.1| respiratory-chain NADH dehydrogenase, subunit [Capnocytophaga sp.
oral taxon 329 str. F0087]
Length = 538
Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats.
Identities = 144/392 (36%), Positives = 212/392 (54%), Gaps = 29/392 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ F +N GPQHP+ HGVLR+ LDGE+V+++DP +G +HRG EK+ E+ T+ Q +
Sbjct: 176 RPDDFIVNIGPQHPSTHGVLRMRTSLDGEMVKKIDPILGYIHRGIEKMNESLTYPQTLAL 235
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDY++ HA + +E+ GIE+ R Q IR + E+ RI SHLL + AMD+G
Sbjct: 236 TDRLDYLSAHQSRHALCMCIEQAAGIEVSERAQYIRTIMDELQRIDSHLLFYSCLAMDMG 295
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
ALTP +GF ERE ++ +E +G R+ Y GGV D+ P+ V + S +
Sbjct: 296 ALTPFFYGFREREMILDIFEDTTGGRLIQNYNVIGGVQADLHPDFVRKTKEFIVHLRSII 355
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
++ D+ T + I + R +G + EDA G +G R SG A D+RK PY Y ++D
Sbjct: 356 HEYHDIFTKSVIARTRLKGVGLLSREDAISLGCTGGTGRASGWANDVRKHHPYAMYGKVD 415
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F HGD +DRY+VRM E+ ES +II Q ++ +
Sbjct: 416 FKEITYTHGDAFDRYMVRMDEIMESCRIIEQLIDNVPEGEFRVKTK-------------- 461
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
+P G A+VEA +GEFGV+LIS G PYR R+ G
Sbjct: 462 ---------------PILKLPEGVFTASVEASRGEFGVFLISRGDKTPYRLHYRSTGLPL 506
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ AM+ +C+G ++AD+ AI G++D V ++DR
Sbjct: 507 VHAMDTVCRGGKIADLIAIGGTMDFVIPDIDR 538
>gi|292655140|ref|YP_003535037.1| NADH dehydrogenase-like complex subunit CD [Haloferax volcanii DS2]
gi|302425122|sp|D4GVF7|NUOCD_HALVD RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName:
Full=NADH dehydrogenase I subunit C/D; AltName:
Full=NDH-1 subunit C/D
gi|291371958|gb|ADE04185.1| NADH dehydrogenase-like complex subunit CD [Haloferax volcanii DS2]
Length = 557
Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats.
Identities = 149/399 (37%), Positives = 213/399 (53%), Gaps = 30/399 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFL-QAVP 63
S + IN GP HPA HGVL + +DGE V ++ IG LHR E++ + T+ Q +P
Sbjct: 182 DSNTMYINIGPHHPATHGVLHVETVVDGEQVVDLESDIGYLHRCEEQMCQQGTYRHQIMP 241
Query: 64 YFDRLDYVAP-MNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
Y DR DY++ + E AYA A E L IE+P Q+IR + +E+ RI SH++ + T A+D
Sbjct: 242 YPDRWDYISSGLLNEWAYARAAEDLADIEVPEYAQIIRTMGAELCRIASHMIALGTFALD 301
Query: 123 VG--ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP---ELVEDIGCWC 177
V ++ +RE + E +G RM YFR GGV D+P E E I +
Sbjct: 302 VYGDFTAIFMYAMRDREIVQNILEDLTGQRMMFNYFRLGGVVWDLPEPREEFFEKIRDFM 361
Query: 178 DSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPY 237
D P AL + D++T N I + R V G + E A +G +G + RGSG +DLR+ Y
Sbjct: 362 DGLPQALEEYHDMITSNEILQARTVGTGVLSPEVAKSYGATGPVARGSGIDYDLRRDDSY 421
Query: 238 ECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIV 297
Y EL++D+ + D + R LVRM E+ ES KII+QCV+ L + ++
Sbjct: 422 GYYDELEWDVVVEDGCDNFSRLLVRMREVEESAKIIQQCVDLLEDWPEDERNIQANVPRT 481
Query: 298 PPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKI 357
D E+Y AVE KGE G+Y+ +DG +KP R KI
Sbjct: 482 LKPDEDT-----------------------EIYRAVEGAKGELGIYIRADGTDKPARFKI 518
Query: 358 RAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
R+P +++LQ + + +G + D+ A LGSLDIV GEVDR
Sbjct: 519 RSPCFSNLQTLPEMSEGEYIPDMIASLGSLDIVLGEVDR 557
>gi|290558866|gb|EFD92257.1| NADH dehydrogenase (quinone) [Candidatus Parvarchaeum acidophilus
ARMAN-5]
gi|290559402|gb|EFD92734.1| NADH dehydrogenase (quinone) [Candidatus Parvarchaeum acidophilus
ARMAN-5]
Length = 366
Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats.
Identities = 144/394 (36%), Positives = 218/394 (55%), Gaps = 30/394 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HPA HGVL+LIL+++G+ V + +P IG LHR +EK+ E + F P
Sbjct: 2 EHKDRIRMNIGPVHPAMHGVLKLILDVEGDTVVKAEPEIGFLHRASEKIAEMRYFSNYYP 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
D+LDYV+ +N E YA VEK GI I R +R + +EI RI+SHL+ + + D
Sbjct: 62 IMDKLDYVSALNMEILYASTVEKAAGITISERATYMRTIMAEIQRIMSHLIFIGSLGEDF 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G LT +W ERE LM E+ SG R+ Y GG+ D P + +DI D +
Sbjct: 122 GNLTSFIWALRERELLMTIVEKISGGRLAPMYMCNGGMFYDFPEGIDKDILEALDKIENK 181
Query: 184 L-NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ ++ S + T N+IF R IG + + +G +G + R SG DLRK PY Y +
Sbjct: 182 VKHEYSAVFTKNQIFLSRTKGIGIMTKDMIKRYGITGPIARASGINRDLRKVSPYLAYDK 241
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+DFD+P+ ++GD Y R++VR+ E+ ES+KIIRQC+ +L G + P I+
Sbjct: 242 VDFDVPVEENGDTYSRFIVRLNEILESIKIIRQCLKQLPA----GNYKTAVPWII----- 292
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+P + + E+ +GE G++L++DG +KPYR K+R+P +
Sbjct: 293 --------------------RIPKKDTFVKQESSRGEMGIFLVTDGSDKPYRLKLRSPTF 332
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++A+E L ++AD I+ S+D V GEVDR
Sbjct: 333 FAIRALEELLVNVKVADAFVIVASIDPVMGEVDR 366
>gi|258590790|emb|CBB97127.1| hydrogenase 3 large subunit [Enterobacter radicincitans]
Length = 569
Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats.
Identities = 98/393 (24%), Positives = 167/393 (42%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIVDADYRMFYVHRGMEKLAETRMGYNEVTF 235
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI +P R Q+IR + E+ R+ SHLLN+ V
Sbjct: 236 LSDRVCGICGFAHSTAYTTSVENAMGIVVPERAQMIRAILLEVERLHSHLLNLGLACHFV 295
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ + +
Sbjct: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDMLKDDMVQTRALAQQMRRD 355
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ ++L +QR V IG + + A + G M+R SG A D R P+ Y L
Sbjct: 356 VMELVEVLMSTPNIEQRTVGIGHLDPQIARDFSNVGPMVRASGHARDTRADHPFAGYGLL 415
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+ + D R VR+ E+ ++ +I ++ L G GP+ +P + A
Sbjct: 416 PMAVHSEQGCDVISRLKVRINEVLTALNMIDFGLDNLPG----GPLMVEGFTYIPHRFAL 471
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 472 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 504
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 505 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537
>gi|117618926|ref|YP_857016.1| hydrogenase-4 component G [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
gi|117560333|gb|ABK37281.1| hydrogenase-4 component G [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
Length = 572
Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats.
Identities = 104/399 (26%), Positives = 169/399 (42%), Gaps = 35/399 (8%)
Query: 1 MDKKKSR-SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-F 58
+++ S + + GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 VNELGSDANRIVPVGPLHITSDEPGHFRLFVDGEDIIDADYRLFYVHRGMEKLAETRMGY 233
Query: 59 LQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTT 118
+ DR+ + AY +VE +GI +P R ++IR + E+ R+ SH+LN+
Sbjct: 234 NEVAFLTDRVCGICGFTHSVAYTTSVENAMGIVVPERAKMIRAVLLEVERLHSHILNIGL 293
Query: 119 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
+ G T + F REK M E +G+R GGV +DI E
Sbjct: 294 SSHFTGFDTGFMQFFRVREKSMTLAELLTGARKTYGLNLIGGVRRDIFKEDRIKGAQLVR 353
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
+ L + +L R + IG + + A + G M+R SG D+R+ +
Sbjct: 354 ELRNELKPLVAMLLDTANISSRLIGIGKLDPQIARDFSCVGPMVRASGFKRDVRRVHDFA 413
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
Y EL +I D R LVR+ E+ +S+ +I + L
Sbjct: 414 GYRELPMEIQTKAGCDVQSRVLVRIHELYDSLDMIEFGLEHLPQGP-------------- 459
Query: 299 PKRADMKRSMESLIHHFKLYTEGYHVPVGE-VYAAVEAPKGEFGVYLISDGGNKPYRCKI 357
L TEG+ G+ EAP+GE + ++ K +R +
Sbjct: 460 ------------------LLTEGFTYQPGKFALGFTEAPRGENVHWSMTGDNQKLFRWRC 501
Query: 358 RAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
RA YA+ A+ ++ +G+ +AD I+GSLD + DR
Sbjct: 502 RAATYANWPALRYMLRGNTVADAPLIIGSLDPCYSCTDR 540
>gi|124485780|ref|YP_001030396.1| membrane bound hydrogenase subunit mbhL [Methanocorpusculum
labreanum Z]
gi|124363321|gb|ABN07129.1| Membrane bound hydrogenase subunit mbhL [Methanocorpusculum
labreanum Z]
Length = 406
Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats.
Identities = 112/395 (28%), Positives = 178/395 (45%), Gaps = 30/395 (7%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
+ + GP HPA + + L + GE V D G HRG E + ++ +Q V DR
Sbjct: 6 PYIVPVGPIHPALKEPVHIELTVVGEEVISADFTPGQTHRGIEWMGLSRNPVQIVHLTDR 65
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ + + A+A AVE++ I +P RG +R + +E RI SHLL A ++G T
Sbjct: 66 ICGICGVTHSLAFARAVEQIADITVPERGDYVRTIIAEFERIQSHLLWAGVAAHELGFDT 125
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
+ RE+ M E +G+R++ + GG +DI + + I +++ + +
Sbjct: 126 LFYLAWRVREEAMDAIEVITGNRVNYDIIQIGGTRRDITEDQYDKIRKCLNTYKDLFSKL 185
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
L + + K R V G + E A + G R SG DLR PY Y +LD
Sbjct: 186 KKLFLEDAVIKSRCVGTGLLSFETAMAYSAVGPTSRASGVTADLRVDYPYCAYGDLDIKP 245
Query: 248 PI------GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ +GD YDR +VR+ E+ +SV+II C++ + GPV
Sbjct: 246 IMPTIYGSDVNGDTYDRIVVRIFEVAQSVEIIETCLDNM----PPGPVIW---------- 291
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ + ++ K + GE EAP+GE Y+ DG P K++A
Sbjct: 292 ---EEKVAKILSTCKKAS-------GEAVGRHEAPRGEAVHYVAMDGAEAPISWKVKASS 341
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Y++L + KG QLAD+ I+ S+D DR
Sbjct: 342 YSNLHVWPIILKGAQLADIPVIVASVDPCLSCTDR 376
>gi|295099916|emb|CBK89005.1| ech hydrogenase subunit E [Eubacterium cylindroides T2-87]
Length = 359
Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats.
Identities = 111/387 (28%), Positives = 184/387 (47%), Gaps = 33/387 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I FGPQHP + L L L+ E+V P+IG +HRG EKL+ETK + Q V +R+
Sbjct: 6 VIPFGPQHPVLPEPIHLDLVLEDEVVVEAIPNIGFVHRGLEKLVETKDYKQYVYIAERVC 65
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ Y ++E ++ I++P R + +R L+ E+ RI SHLL + A +G
Sbjct: 66 GICSFGHGLGYCESIEHMMNIDVPRRAKYLRTLWMELSRIHSHLLWLGLLADALGFEALF 125
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ + REK++ ++ +G R+ + + GGV +DI P +++ I L I+
Sbjct: 126 MQSWRLREKVLDLFDMTTGGRIIFSVNQVGGVLKDIDPSMLKIIDQTLTDMEKELKPITR 185
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+R+ R +G + E A+ G G M+R SG +D R++ Y YSEL+F I
Sbjct: 186 TFLEDRLVNSRLRGLGVLSKEQAYIAGACGPMLRASGVPYDSRETG-YAAYSELNFGPII 244
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD Y R VR+ E+ +S +I+ + ++++ PV +
Sbjct: 245 AIEGDSYARVKVRLAEIMQSFEILHELISKIPQGEISVPVKGN----------------- 287
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
P GE + +E P+GE Y +G R ++R P +++ AM
Sbjct: 288 ---------------PKGECFIRIEQPRGEAIYYTKGNGTKYLDRFRLRTPTTSNIPAML 332
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVDR 396
L KG QL DV+ ++ ++D +R
Sbjct: 333 DLLKGCQLGDVALLILTIDPCISCTER 359
>gi|330829823|ref|YP_004392775.1| formate hydrogenlyase subunit 5 [Aeromonas veronii B565]
gi|328804959|gb|AEB50158.1| Formate hydrogenlyase subunit 5 [Aeromonas veronii B565]
Length = 572
Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats.
Identities = 104/399 (26%), Positives = 169/399 (42%), Gaps = 35/399 (8%)
Query: 1 MDKKKSR-SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-F 58
+++ S + + GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 VNELGSDANRIVPVGPLHITSDEPGHFRLFVDGEDIIDADYRLFYVHRGMEKLAETRMGY 233
Query: 59 LQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTT 118
+ DR+ + AY +VE +GI +P R ++IR + E+ R+ SH+LN+
Sbjct: 234 NEVAFLTDRVCGICGFTHSVAYTTSVENAMGIPVPERAKMIRAVLLEVERLHSHILNIGL 293
Query: 119 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
+ G T + F REK M E +G+R GGV +DI E
Sbjct: 294 SSHFTGFDTGFMQFFRVREKSMTLAELLTGARKTYGLNLIGGVRRDIFKEDRIKGAQLVR 353
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
L + +L R + IG ++ + A + G M+R SG D+R+ +
Sbjct: 354 ELRDELKPLVAMLLDTANISSRLIGIGKLEPQIARDFSCVGPMMRASGFKRDVRRVHDFA 413
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
Y EL +I D R LVR+ E+ +S+ +I + L
Sbjct: 414 GYRELPMEIQTKAGCDVQSRVLVRIHELYDSLDMIEFGLEHLPEGP-------------- 459
Query: 299 PKRADMKRSMESLIHHFKLYTEGYHVPVGE-VYAAVEAPKGEFGVYLISDGGNKPYRCKI 357
L TEG+ G+ EAP+GE + ++ K +R +
Sbjct: 460 ------------------LLTEGFTYQPGKFALGFTEAPRGENVHWSMTGDNQKLFRWRC 501
Query: 358 RAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
RA YA+ A+ ++ +G+ +AD I+GSLD + DR
Sbjct: 502 RAATYANWPALRYMLRGNTVADAPLIIGSLDPCYSCTDR 540
>gi|78043871|ref|YP_360647.1| carbon monoxide-induced hydrogenase large subunit [Carboxydothermus
hydrogenoformans Z-2901]
gi|77995986|gb|ABB14885.1| carbon monoxide-induced hydrogenase, large subunit
[Carboxydothermus hydrogenoformans Z-2901]
Length = 360
Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats.
Identities = 107/389 (27%), Positives = 181/389 (46%), Gaps = 31/389 (7%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
++TI GP H A + +E++GE + ++ G +HRG E L + Q + +R
Sbjct: 3 TYTIPVGPLHVALEEPMYFRVEVEGETIVGLELTAGHVHRGIEYLAMKRNIYQNLTLLER 62
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ + N Y +A+EK+ GI+IP R + +RV+ EI RI SHL N+ A +G +
Sbjct: 63 VCSLCSNNHPFTYCMALEKIAGIQIPERAEYLRVIADEIKRIASHLFNIAMMAHIIGFDS 122
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
+ E RE + E G+RM A GGV D+ E ++ + D+ L +I
Sbjct: 123 LFMHVMELREIVQDIKETIYGNRMDLAANCIGGVRYDLSEEKIKYLARQLDNLKKPLEEI 182
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ + N+ + R +G + ++A +G G + RGSG D+R PY Y +L ++
Sbjct: 183 TRIYMNNKFVRARTEGVGILPKDEALRYGVVGPVARGSGINNDVRVKSPYAAYDKLKVNV 242
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
+ D R LVR+ E++E++ I++ C+ L
Sbjct: 243 QLETGCDVKARALVRLREIQEAINIVQHCLKELPDGPTCIDYL----------------- 285
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
+P GE A EAP+GE YL ++G + P R K R P Y + +A
Sbjct: 286 --------------PEIPAGEAVARSEAPRGELIYYLRTNGSDIPERIKWRVPTYMNWEA 331
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ + G+++AD+ I+ S+D +R
Sbjct: 332 LKVMMPGNKVADIPLIINSIDPCISCTER 360
>gi|42795530|gb|AAS46097.1| NADH dehydrogenase subunit 7 [Oryza sativa Indica Group]
gi|42795596|gb|AAS46162.1| NADH dehydrogenase subunit 7 [Oryza sativa Japonica Group]
gi|42795660|gb|AAS46225.1| NADH dehydrogenase subunit 7 [Oryza sativa Japonica Group]
gi|290790618|gb|ADD62878.1| NADH-plastoquinone oxidoreductase subunit 7 [Oryza sativa Japonica
Group]
gi|290790687|gb|ADD62946.1| NADH-plastoquinone oxidoreductase subunit 7 [Oryza meridionalis]
gi|290790756|gb|ADD63014.1| NADH-plastoquinone oxidoreductase subunit 7 [Oryza australiensis]
Length = 343
Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats.
Identities = 143/348 (41%), Positives = 195/348 (56%), Gaps = 5/348 (1%)
Query: 49 TEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGR 108
EK+ E +T +Q +PY R DY+A M E A E L I+IP R IRV+ E+ R
Sbjct: 1 MEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSR 60
Query: 109 ILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE 168
I SHLL + D+GA TP + F ERE + +E A+G RM YFR GGV D+P
Sbjct: 61 IASHLLWLGPFMADLGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYG 120
Query: 169 LVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAA 228
++ +CD F + + L+T N IF +R +G + E+A WG SG M+R SG
Sbjct: 121 WIDKCLDFCDYFLRGVIEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQ 180
Query: 229 WDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGP 288
WDLRK YE Y++ D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP
Sbjct: 181 WDLRKVDLYESYNQFDWKVQWQKEGDSLARYLVRIGEMRESIKIIQQAVEKIPG----GP 236
Query: 289 VSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG 348
+ + + E K + + + E+YA VEAPKGE G+YL+ D
Sbjct: 237 YENLEVRRFKKAKNSEWNDFE-YRFLGKKPSPNFELSKQELYARVEAPKGELGIYLVGDD 295
Query: 349 GNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
P+R KIR PG+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 296 SLFPWRWKIRPPGFINLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 343
>gi|260892454|ref|YP_003238551.1| NADH-ubiquinone oxidoreductase chain 49kDa [Ammonifex degensii KC4]
gi|260864595|gb|ACX51701.1| NADH-ubiquinone oxidoreductase chain 49kDa [Ammonifex degensii KC4]
Length = 358
Score = 316 bits (810), Expect = 4e-84, Method: Composition-based stats.
Identities = 113/389 (29%), Positives = 169/389 (43%), Gaps = 33/389 (8%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
T FGPQHP ++LIL + E V V P IG +HRG EK E + V +R
Sbjct: 3 RVTFPFGPQHPVLPEPVQLILTCEDEKVVEVKPRIGYMHRGIEKGCELNPYKHNVFLCER 62
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ + AY +EK +GIE+P R + +RV ++E+ R+ SHLL + A G +
Sbjct: 63 ICGICSFIHAEAYCEVIEKAMGIEVPPRAKYLRVFWAELSRMHSHLLWLGLFADGFGLES 122
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
+ + RE ++ E SG R+ + GGV +D+ P+ + + F I
Sbjct: 123 LFMQCWRARELVLDVLELTSGHRVIQSTCVVGGVRKDLDPDQIRTVREMLKQFKELYTPI 182
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ +R K R G + + AW G G IRGSG A+D R Y Y EL F+
Sbjct: 183 FQVFQHDRTIKSRTWGKGILPKDVAWQLGAVGPTIRGSGWAFDAR-MDGYAAYGELGFEP 241
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
+ + D Y R +VR E+ +S +++ ++RL PV +
Sbjct: 242 VVEEGCDSYARMMVRAREVWQSWELVNLVLDRLPAGEINVPVEDN--------------- 286
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
P GE E P+GE Y DG R K+R P +A+L
Sbjct: 287 -----------------PKGEAIHRAEQPRGEVIYYCRGDGSPNLKRLKVRTPSFANLPT 329
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + G +LADV I S+D +R
Sbjct: 330 LLVMLPGCELADVPVITLSIDPCIACTER 358
>gi|296134445|ref|YP_003641692.1| NADH dehydrogenase (quinone) [Thermincola sp. JR]
gi|296033023|gb|ADG83791.1| NADH dehydrogenase (quinone) [Thermincola potens JR]
Length = 360
Score = 316 bits (810), Expect = 4e-84, Method: Composition-based stats.
Identities = 113/389 (29%), Positives = 177/389 (45%), Gaps = 31/389 (7%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
++TI GP H A + + +GE V +D G +HRG E L + Q + +R
Sbjct: 3 TYTIPVGPLHVALEEPMYFKIHAEGETVTDIDITAGHVHRGMEYLALKRNIYQNITLTER 62
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ + N Y +A+E+L GIE+P R + +RV+ EI RI SHL N A +G +
Sbjct: 63 VCSLCSNNHPFTYCMALERLAGIEVPERAEYLRVIADEIKRIASHLFNTGMLAHIIGFDS 122
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
+ E RE + E G+RM A GGV ++ E + + + L +I
Sbjct: 123 LFMHVMELREIVQDTKETIYGNRMDLAANSIGGVRYNLTEEKAKYLLKNLEQLKKPLQEI 182
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ + N + + R +G + E A +G G + RGSG +D+R PY Y+ L+F +
Sbjct: 183 CKIYSTNPLVRLRTEGVGILPKEKAVEYGVVGPVARGSGINYDVRVKNPYAAYNRLNFTV 242
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
P+ GD R +VR+ E+ ES+ II QCV +
Sbjct: 243 PVETGGDVRARAIVRLREIAESISIIEQCVRDMPEGPTCLDYLPD--------------- 287
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
+P GE A EAP+GE Y+ + + P R K R P Y + +A
Sbjct: 288 ----------------IPAGEAVAKSEAPRGELLYYVRTANSDLPERIKWRVPTYMNWEA 331
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ + G++LADV I+GS+D +R
Sbjct: 332 LKIMIPGNKLADVPVIIGSIDPCISCTER 360
>gi|296242364|ref|YP_003649851.1| NADH-ubiquinone oxidoreductase subunit 49kDa [Thermosphaera
aggregans DSM 11486]
gi|296094948|gb|ADG90899.1| NADH-ubiquinone oxidoreductase chain 49kDa [Thermosphaera aggregans
DSM 11486]
Length = 397
Score = 316 bits (810), Expect = 4e-84, Method: Composition-based stats.
Identities = 116/389 (29%), Positives = 178/389 (45%), Gaps = 28/389 (7%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
+ GPQHPA H + L DGE + +V+ + G HRG EKL E +F + + R+
Sbjct: 13 LELPVGPQHPALHEPVLLKAYADGEEIIKVEINTGYNHRGIEKLCEKNSFYRDIFIVARV 72
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+ + + Y AVE +LG+EI R + +RVL E+ R+ SH+L A ++G
Sbjct: 73 CGICNLVHANCYVRAVEHILGMEISNRAKYLRVLAMELERLHSHMLINAVMAENIGFENL 132
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
+ +RE++M E +G+R+ + Y GGV +D+ E I +
Sbjct: 133 FMNIMLDRERIMKAKEILTGNRVLSDYMMVGGVRRDVDDVKKEKIRDILLKTEERIKYYR 192
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
+ + +R V++GTV DA + G + R SG D R S Y+ YSE+ F++
Sbjct: 193 RVFEEDSTIIKRTVDVGTVSTSDAVKYSLVGPVARASGVRIDSRASDKYDAYSEIPFNVI 252
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
GD + R +VR E ES+ I +N L P P+
Sbjct: 253 TRSEGDSWARMMVRWDEALESINIALHVLNHLPSDANPVPDEKKLPR------------- 299
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG-GNKPYRCKIRAPGYAHLQA 367
+P GE Y VEA +GE Y++SDG + PYR KIR P + ++
Sbjct: 300 --------------KIPAGEAYTRVEAQRGELTYYVMSDGKSSNPYRVKIRTPSFNNIIN 345
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
F+ G +AD+ IL SLD ++R
Sbjct: 346 SGFMYVGQTIADLPVILTSLDPCISCMER 374
>gi|258590784|emb|CBB97121.1| hydrogenase 3 large subunit [Enterobacter radicincitans]
Length = 570
Score = 316 bits (809), Expect = 4e-84, Method: Composition-based stats.
Identities = 95/393 (24%), Positives = 165/393 (41%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIVDADYRMFYVHRGMEKLAETRMGYNEVTF 235
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI +P R Q+IR + E+ R+ S+LLN+ V
Sbjct: 236 LSDRVCGICGFAHSTAYTTSVENAMGIVVPERAQMIRAILLEVERLHSNLLNLGLACHFV 295
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ + +
Sbjct: 296 GFDSGFMQFFRVREASMKMAEILTGARKTYGLNLIGGIRRDMLKDDMIQTRQLAQQMRRD 355
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ ++L +QR V IG + + A + G M+R SG A D R P+ Y L
Sbjct: 356 VTELVEMLMSTPNIEQRTVGIGRLDPQIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+ + D R VR+ E+ ++ + ++ L GP+ +P + A
Sbjct: 416 PMTVHTEQGCDVISRLKVRINEVLTALNM----IDYGLDNLPGGPLMVEGFTYIPHRFAL 471
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 472 ---------------------------GFSEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 504
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 505 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537
>gi|83592761|ref|YP_426513.1| ech hydrogenase subunit E [Rhodospirillum rubrum ATCC 11170]
gi|2828201|sp|P31895|COOH_RHORU RecName: Full=Carbon monoxide-induced hydrogenase
gi|1498746|gb|AAC45121.1| CooH [Rhodospirillum rubrum]
gi|83575675|gb|ABC22226.1| ech hydrogenase subunit E [Rhodospirillum rubrum ATCC 11170]
Length = 361
Score = 316 bits (809), Expect = 5e-84, Method: Composition-based stats.
Identities = 119/391 (30%), Positives = 180/391 (46%), Gaps = 34/391 (8%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
++TI GP H A + +E+DGE V VD G +HRG E L + Q + +R
Sbjct: 3 TYTIPVGPLHVALEEPMYFRIEVDGEKVVSVDITAGHVHRGIEYLATKRNIYQNIVLTER 62
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ + + Y +A+E + G+ +P R Q +RV+ E R+ SH+ NV A VG +
Sbjct: 63 VCSLCSNSHPQTYCMALESITGMVVPPRAQYLRVIADETKRVASHMFNVAILAHIVGFDS 122
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL-ND 186
+ E RE + E G+RM A GGV D+ + + D L ++
Sbjct: 123 LFMHVMEAREIMQDTKEAVFGNRMDIAAMAIGGVKYDLDKDGRDYFIGQLDKLEPTLRDE 182
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
I L N R IG + D +G G + RGSG A+D+RK PY Y LDF+
Sbjct: 183 IIPLYQTNPSIVDRTRGIGVLSAADCVDYGLMGPVARGSGHAYDVRKQAPYAVYDRLDFE 242
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL-GKNKVGPVSASDPKIVPPKRADMK 305
+ +G+HGD + R +VR E S+ +IRQC+ + G K GPV
Sbjct: 243 MALGEHGDVWSRAMVRWQEALTSIGLIRQCLRDMPDGPTKAGPV---------------- 286
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
+P GE A EAP+GE YL ++G ++P R K R P Y +
Sbjct: 287 ----------------PPIPAGEAVAKTEAPRGELIYYLKTNGTDRPERLKWRVPTYMNW 330
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A+ + G +++D+ I+ S+D +R
Sbjct: 331 DALNVMMAGARISDIPLIVNSIDPCISCTER 361
>gi|258590786|emb|CBB97123.1| hydrogenase 3 large subunit [Enterobacter radicincitans]
Length = 570
Score = 316 bits (809), Expect = 5e-84, Method: Composition-based stats.
Identities = 96/393 (24%), Positives = 165/393 (41%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIVDADYRMFYVHRGMEKLAETRMGYNEVTF 235
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI +P R Q+IR + E+ R+ S+LLN+ V
Sbjct: 236 LSDRVCGICGFAHSTAYTTSVENAMGIVVPERAQMIRAILLEVERLHSNLLNLGLACHFV 295
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ + +
Sbjct: 296 GFDSGFMQFFRVREASMKMAEILTGARKTYGLNLIGGIRRDMLKDDMIQTRQLAQQMRRD 355
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ ++L +QR V IG + + A + G M+R SG A D R P+ Y L
Sbjct: 356 VTELVEMLMSTPNIEQRTVGIGRLDPQIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+ + D R VR+ E+ ++ + ++ L GP+ VP + A
Sbjct: 416 PMTVHTEQGCDVISRLKVRINEVLTALNM----IDYGLDNLPGGPLMVEGFTYVPHRFAL 471
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 472 ---------------------------GFSEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 504
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 505 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537
>gi|307352626|ref|YP_003893677.1| NADH-ubiquinone oxidoreductase subunit 49kDa [Methanoplanus
petrolearius DSM 11571]
gi|307155859|gb|ADN35239.1| NADH-ubiquinone oxidoreductase chain 49kDa [Methanoplanus
petrolearius DSM 11571]
Length = 360
Score = 316 bits (809), Expect = 5e-84, Method: Composition-based stats.
Identities = 103/391 (26%), Positives = 178/391 (45%), Gaps = 33/391 (8%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
R + FGPQHP + L L ++ E V P IG +HRG EKL+E K + V
Sbjct: 3 GRRTVVPFGPQHPVLPEPIHLDLVIEDERVVEAVPSIGYVHRGLEKLVEKKDYKNYVYIA 62
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
+R+ + + +E ++G+E+P R Q +R ++SE R+ SHLL + A +G
Sbjct: 63 ERICGICSFIHSVGFCQGIENIMGVEVPERAQYLRTIWSEYSRMHSHLLWMGLFADAMGF 122
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ + RE+++ E +G R+ + GGV +DI ++++ D + +
Sbjct: 123 ENLFMNAWRIREQVLDVMEETTGGRVIQGSCKVGGVRRDISDSKLKEMSAGLDRTYAEVE 182
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+++ + + R IG + +DA+ G G RG G A D R++ Y Y ELDF
Sbjct: 183 ELNHVFFDDSTVIHRTSGIGYLSKDDAYHLGAVGPTARGCGVAIDARETG-YLKYPELDF 241
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ GDCY R +VR E+ +S +I+Q + ++ + V +
Sbjct: 242 KPIVETEGDCYSRCVVRAKEVLQSADLIKQAIEKIPDGDIEVKVKGN------------- 288
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
P GE ++ VE P+GE Y+ +G R ++R P ++
Sbjct: 289 -------------------PDGEYFSRVEQPRGECIHYVKGNGKRFLVRERVRTPTLTNI 329
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + G ++ADV I+ ++D G +R
Sbjct: 330 PPLVKMLAGCEMADVPVIVLTIDPCIGCAER 360
>gi|224373084|ref|YP_002607456.1| carbon monoxide-induced hydrogenase, large subunit [Nautilia
profundicola AmH]
gi|223589979|gb|ACM93715.1| carbon monoxide-induced hydrogenase, large subunit [Nautilia
profundicola AmH]
Length = 359
Score = 315 bits (808), Expect = 6e-84, Method: Composition-based stats.
Identities = 114/386 (29%), Positives = 177/386 (45%), Gaps = 31/386 (8%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
I GP H + ++L GE V VD G +HRG E L K F Q + +R+
Sbjct: 5 IPIGPFHIGLEEPIYFKIDLKGETVTDVDMINGFVHRGIEYLAMQKNFFQNLILTERVCS 64
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ N Y +AVEK+ GIE+ R +RV+ E+ RI SH+ N++ A VG +
Sbjct: 65 LCSNNHPFTYVMAVEKIAGIEVSKRANYLRVVADEVKRIASHMFNLSMLAHLVGFHSLMT 124
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
E RE + E G+RM + GV D+ +E I + ++++ D+
Sbjct: 125 QTMEAREIMQDIKESIWGNRMDMSANTLSGVKYDLDEGQIEYILKRLEELEPQVDELMDI 184
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
++I K R V +G + E+A G +G RGSG D+R PY Y EL ++ +
Sbjct: 185 YFNSKITKARTVGVGVLPKEEALRLGVTGPTARGSGVNNDVRDKAPYAAYDELKPNVCLE 244
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
+ GD Y R VR E+++S++++RQ + L V
Sbjct: 245 EGGDVYSRMKVRWREVKDSIRLVRQAITNLPEGPVV------------------------ 280
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
+ H+P GE EAP+GE YL +DG KP R + R P Y + +A+
Sbjct: 281 -------TQKRPHIPAGEAVTRTEAPRGELIYYLKTDGSQKPLRMRWRVPTYMNWEALRV 333
Query: 371 LCKGHQLADVSAILGSLDIVFGEVDR 396
+ G++L+DV+ I S+D +R
Sbjct: 334 MIPGNKLSDVAVIFNSIDPCISCTER 359
>gi|330997244|ref|ZP_08321097.1| respiratory-chain NADH dehydrogenase, subunit [Paraprevotella
xylaniphila YIT 11841]
gi|329571039|gb|EGG52746.1| respiratory-chain NADH dehydrogenase, subunit [Paraprevotella
xylaniphila YIT 11841]
Length = 538
Score = 315 bits (808), Expect = 6e-84, Method: Composition-based stats.
Identities = 142/390 (36%), Positives = 209/390 (53%), Gaps = 29/390 (7%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
F +N GPQHP+ HGVLR+ LDGE V+++DP +G +HRG EK+ E+ T+ Q + D
Sbjct: 178 DDFIVNIGPQHPSTHGVLRMRTSLDGETVKKIDPILGYIHRGIEKMNESLTYPQTLALTD 237
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDY++ HA + +E+ GIE+ R Q IR + E+ RI SHLL + AMD+GAL
Sbjct: 238 RLDYLSAHQSRHALCICIEQAAGIEVSQRAQYIRTIMDELQRIDSHLLFYSCLAMDMGAL 297
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP +GF ERE ++ +E +G R+ Y GGV D+ P+ V + + +++
Sbjct: 298 TPFFYGFREREMILDIFEDTTGGRLIQNYNVIGGVQADLHPDFVRKTKEFIVHLRNIIHE 357
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
D+ T + I + R +G + EDA G +G R G A D+RK PY Y ++DF
Sbjct: 358 YHDIFTKSVIARTRLKGVGLLSREDAISLGCTGGTGRACGWANDVRKHHPYAMYGKVDFK 417
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
HGD +DRY+VRM E+ ES +II Q ++ +
Sbjct: 418 EITYTHGDSFDRYMVRMDEIMESCRIIEQLIDNVPEGEFRVKTK---------------- 461
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+P G A+VEA +GEFGV+LIS G PYR R+ G +
Sbjct: 462 -------------PILKLPEGVFTASVEASRGEFGVFLISRGDKMPYRLHYRSTGLPLVH 508
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AM+ +C+G ++AD+ AI G++D V ++DR
Sbjct: 509 AMDTVCRGGKIADLIAIGGTMDFVIPDIDR 538
>gi|147669428|ref|YP_001214246.1| ech hydrogenase subunit E [Dehalococcoides sp. BAV1]
gi|146270376|gb|ABQ17368.1| ech hydrogenase subunit E [Dehalococcoides sp. BAV1]
Length = 359
Score = 315 bits (808), Expect = 6e-84, Method: Composition-based stats.
Identities = 109/390 (27%), Positives = 175/390 (44%), Gaps = 34/390 (8%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
I FGPQHP ++L LE + E V V P IG +HRG EK E T Q + +R
Sbjct: 3 RTVIPFGPQHPVFPEPVQLKLECEDETVVGVTPVIGYVHRGVEKACELNTLRQNIFLVER 62
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ + + Y +E+L IEIP R +R ++E+ R+ SH L + + +G +
Sbjct: 63 ICGICSIQHALCYCQGIEELANIEIPQRAHYLRTAWAELSRLHSHSLWLGLLSDALGFES 122
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND- 186
+ + RE ++ E +G R+ + GGV +DI E+++ F ++
Sbjct: 123 LFMQIWRAREIILDILEMTAGHRVITSACVVGGVRRDIDAEMLKKTEAMLGDFRKMMDKT 182
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
I L + K+R V G + + A G G +RGSG D+R + Y + EL F+
Sbjct: 183 ILPTLLNDPTLKKRTVGKGILSYDQAVTLGACGPTMRGSGVPSDVRSTG-YAAFKELGFE 241
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ GD Y R LVR E+ +S+ + ++++ +AD
Sbjct: 242 PVVETAGDSYARTLVRTRELYQSIDLTLAALHQMPAGEI-------------MVKADAY- 287
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
P GE++ VE P+GE Y+ ++G N RCKIR P +A++
Sbjct: 288 ------------------PEGEIFTRVEQPRGELTYYIKANGTNHLDRCKIRTPTFANIP 329
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + G +LADV I S+D +R
Sbjct: 330 TLLVMLPGCELADVPVITLSIDPCISCTER 359
>gi|110667598|ref|YP_657409.1| NADH dehydrogenase, subunit Cd (ubiquinone) [Haloquadratum walsbyi
DSM 16790]
gi|109625345|emb|CAJ51767.1| NADH dehydrogenase, subunit CD (ubiquinone) [Haloquadratum walsbyi
DSM 16790]
Length = 559
Score = 315 bits (808), Expect = 7e-84, Method: Composition-based stats.
Identities = 155/401 (38%), Positives = 216/401 (53%), Gaps = 30/401 (7%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFL-QA 61
+++ + IN GP HPA HGVL + LDGE + +DP IG LHR E++ E KT+ Q
Sbjct: 182 EEEGDTMYINIGPHHPATHGVLHVKTVLDGEQIADIDPDIGYLHRCEEQICEAKTYRHQI 241
Query: 62 VPYFDRLDYVAP-MNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY DR DY + + E AYA A E L +E+P Q+IR + +EI RI SH+L V T A
Sbjct: 242 MPYPDRWDYASSGLLNEWAYARAAEDLNDLEVPEYAQVIRTMGAEICRIASHMLAVGTFA 301
Query: 121 MDVG--ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIP---PELVEDIGC 175
+DV ++ +REK E +G RM YFR GGV D+P E E I
Sbjct: 302 LDVYGDFTAIFMYAMRDREKAQNILEDLTGQRMMFNYFRLGGVVWDLPEPRDEFFETIRD 361
Query: 176 WCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQ 235
+ + P+AL + DL++ N I + R ++ G + E+A +G +G + RGSG +DLR+
Sbjct: 362 FLEDLPTALEEYHDLISSNEILQVRTIDTGVLPPEEAKSYGATGPVARGSGIDYDLRRDD 421
Query: 236 PYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPK 295
PY Y ELD+D+ D + R LVR+ E+ ES KII QCV+ L G + S+
Sbjct: 422 PYGYYDELDWDVVTEDGCDNFSRLLVRLREVEESAKIIEQCVDILEGWPEDERTIQSNVP 481
Query: 296 IVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRC 355
D E+Y AVE KGE G+Y+ DG +P R
Sbjct: 482 RTLRPDDD-----------------------AEIYRAVEGAKGELGIYIRGDGTEEPGRF 518
Query: 356 KIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
KIR+P +++LQ + + G + D+ A LGSLDIV GEVDR
Sbjct: 519 KIRSPCFSNLQTLPEMSSGEYIPDMVASLGSLDIVLGEVDR 559
>gi|30064075|ref|NP_838246.1| large subunit of hydrogenase 3 (part of FHL complex) [Shigella
flexneri 2a str. 2457T]
gi|30042331|gb|AAP18056.1| large subunit of hydrogenase 3 (part of FHL complex) [Shigella
flexneri 2a str. 2457T]
gi|313648197|gb|EFS12642.1| formate hydrogenlyase subunit 5 [Shigella flexneri 2a str. 2457T]
Length = 569
Score = 315 bits (808), Expect = 7e-84, Method: Composition-based stats.
Identities = 96/393 (24%), Positives = 165/393 (41%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ HLLN+
Sbjct: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHPHLLNLGLACHFT 295
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ + +
Sbjct: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 355
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 356 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGLARDTRADHPFVGYGLL 415
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ ++ + ++ L GP+ +P + A
Sbjct: 416 PMEVHSEQGCDVISRLKVRINEVYTALNM----IDYGLDNLPGGPLMVEGFTYIPHRFAL 471
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 472 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 504
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++ V I+GSLD + DR
Sbjct: 505 NWPTLRYMLRGNTVSYVPLIIGSLDPCYSCTDR 537
>gi|15789835|ref|NP_279659.1| NADH dehydrogenase/oxidoreductase [Halobacterium sp. NRC-1]
gi|169235556|ref|YP_001688756.1| NADH dehydrogenase-like complex subunit Cd [Halobacterium salinarum
R1]
gi|10580227|gb|AAG19139.1| NADH dehydrogenase/oxidoreductase [Halobacterium sp. NRC-1]
gi|167726622|emb|CAP13407.1| NADH dehydrogenase-like complex subunit CD [Halobacterium salinarum
R1]
Length = 562
Score = 315 bits (808), Expect = 7e-84, Method: Composition-based stats.
Identities = 149/400 (37%), Positives = 206/400 (51%), Gaps = 32/400 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFL-QAVP 63
S + +N GP HPA HGVL + LDGE V V+P IG LHR E++ + T+ Q +P
Sbjct: 187 DSDTMFLNIGPHHPATHGVLHVETVLDGEQVADVNPDIGYLHRCEEQMAQKGTYRHQIMP 246
Query: 64 YFDRLDY-VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
Y DR DY + E AYA E L I++P Q++R + E+ RI H+L + T +D
Sbjct: 247 YPDRWDYGPGGILNEWAYARTAEDLADIDVPEYAQILRTMGGELCRIACHMLALGTFCLD 306
Query: 123 VG--ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP---ELVEDIGCWC 177
+ ++ +RE + E +G RM Y R GGV DIP E E + +
Sbjct: 307 IYGDFTAIFMYAMRDREVVQNILEDLTGQRMMLNYLRLGGVVWDIPEPRAEFFESVRDFL 366
Query: 178 DSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPY 237
D P L++ SDL+T N IF+ R VN G + E A +G +G + RGSG +D+R+ PY
Sbjct: 367 DELPERLDEYSDLITSNEIFQARTVNTGVLDYETAKDYGVTGPVARGSGVDYDVRRDDPY 426
Query: 238 ECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIV 297
Y ELD+D+ GD Y R LVRM E+ +S +II QCV+ L G
Sbjct: 427 GYYPELDWDVVTEDGGDNYSRLLVRMEEVEQSARIIEQCVDLLEGWP------------- 473
Query: 298 PPKRADMKRSMESLIHHFKLYTEGYHVPVG-EVYAAVEAPKGEFGVYLISDGGNKPYRCK 356
E G E Y VE KGE GVY+ +DG KP R K
Sbjct: 474 -----------EDERDIQANVPRTLKPEAGTETYRTVEGAKGELGVYIRADGTEKPGRFK 522
Query: 357 IRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
IR+P +++L A++ + G + D+ A LGSLD++ GEVDR
Sbjct: 523 IRSPCFSNLSALKEMSTGEYIPDLVATLGSLDVILGEVDR 562
>gi|281602086|gb|ADA75070.1| Large subunit of hydrogenase 3 [Shigella flexneri 2002017]
Length = 576
Score = 315 bits (807), Expect = 8e-84, Method: Composition-based stats.
Identities = 95/393 (24%), Positives = 164/393 (41%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 183 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 242
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ HLLN+
Sbjct: 243 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHPHLLNLGLACHFT 302
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ + +
Sbjct: 303 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 362
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 363 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGLARDTRADHPFVGYGLL 422
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ ++ + ++ L GP+ +P + A
Sbjct: 423 PMEVHSEQGCDVISRLKVRINEVYTALNM----IDYGLDNLPGGPLMVEGFTYIPHRFAL 478
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 479 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 511
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++ I+GSLD + DR
Sbjct: 512 NWPTLRYMLRGNTVSYAPLIIGSLDPCYSCTDR 544
>gi|257386259|ref|YP_003176032.1| NADH-ubiquinone oxidoreductase chain 49kDa [Halomicrobium
mukohataei DSM 12286]
gi|257168566|gb|ACV46325.1| NADH-ubiquinone oxidoreductase chain 49kDa [Halomicrobium
mukohataei DSM 12286]
Length = 543
Score = 314 bits (806), Expect = 1e-83, Method: Composition-based stats.
Identities = 149/398 (37%), Positives = 211/398 (53%), Gaps = 32/398 (8%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFL-QAVPYF 65
+ +N GP HP+ HGVL L + LDGE V V P IG +HR E+L + T+ Q +PY
Sbjct: 170 DTMHLNMGPHHPSTHGVLHLRVTLDGETVADVTPEIGFIHRCEEQLCQQGTYRHQIMPYP 229
Query: 66 DRLDYV-APMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNV--TTQAMD 122
DR D+ A + E AYA A E L+G+++P Q+IR + +E+ RILSH L + +
Sbjct: 230 DRWDWSGAGLLNEWAYARAAEDLIGVDVPEYAQVIRTMSAELSRILSHFLAIAAYGLDVI 289
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP---ELVEDIGCWCDS 179
+G +RE + E +G R+ YFR GGV D+P E + + D
Sbjct: 290 SEFTAVFQYGIRDREIVQDILEDLTGQRLMFNYFRLGGVAWDLPEPRETFCETVRSFLDD 349
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
P L + DLLTGN I + R V+ G + E A +G +G + RGSG DLR+ PY
Sbjct: 350 LPQKLEEYHDLLTGNEILQMRTVDTGVLPPETAKAYGCTGPVARGSGVDCDLRRDDPYGY 409
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKV-GPVSASDPKIVP 298
Y ELD+D+ D + R LVR+ E+ ES KII QCV+ L + + + P+ V
Sbjct: 410 YDELDWDVVTEDGCDNFSRVLVRLREIEESAKIIEQCVDLLEEWPEDDRTIQGNVPRTVR 469
Query: 299 PKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
P R E+Y AVEA KGE G+Y+ SDG + P R KIR
Sbjct: 470 PDR------------------------DAEIYRAVEAAKGELGIYIRSDGTDTPARFKIR 505
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
P +++LQ++ + +G + D+ A +GSLD + GEVDR
Sbjct: 506 GPSFSNLQSLPEMAEGEYIPDLVASIGSLDTIMGEVDR 543
>gi|292655128|ref|YP_003535025.1| NADH-quinone oxidoreductase chain c/d [Haloferax volcanii DS2]
gi|291372733|gb|ADE04960.1| nadh-quinone oxidoreductase chain c/d [Haloferax volcanii DS2]
Length = 568
Score = 314 bits (806), Expect = 1e-83, Method: Composition-based stats.
Identities = 145/401 (36%), Positives = 207/401 (51%), Gaps = 30/401 (7%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFL-QA 61
+ + + +N GP HPA HGV+ L + LDGE V V+P IG +HR E++ + T+ Q
Sbjct: 191 RADTNTMLLNIGPHHPATHGVMHLQVTLDGEQVADVEPDIGYIHRCEEQMCQQGTYRHQI 250
Query: 62 VPYFDRLD-YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PY DR D + E AYA E L I++P Q++R L +E+ RILSH+L V A
Sbjct: 251 MPYPDRWDWGGGGLLNEWAYARTAEALADIDVPEYAQVLRTLAAELSRILSHMLAVGAYA 310
Query: 121 MDV--GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP---ELVEDIGC 175
+DV ++ +RE + E +G R+ YFR GGV D+P E E I
Sbjct: 311 LDVVGDFTATFMYAMRDRELVQNILEDLTGQRLMFNYFRLGGVVWDLPEPREEFFEKIRT 370
Query: 176 WCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQ 235
+ D P L + DLLT N I + R V G + E A +G +G + RGSG +DLR+
Sbjct: 371 FVDGLPEKLREYHDLLTANEILQARTVETGILPPEVAKDYGVTGPVARGSGIDYDLRRDD 430
Query: 236 PYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPK 295
PY Y ELD+ + + D + R LVR+ E+ ES I+ QCV+ L ++
Sbjct: 431 PYGYYDELDWSVAVEDGCDNFARLLVRLREVEESATIVAQCVDLLEDWPDDDRTIQANVP 490
Query: 296 IVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRC 355
D EVY AVEA KGE G+Y+ +DG + P R
Sbjct: 491 RTLKPDDDT-----------------------EVYRAVEAAKGELGIYIRADGTDTPARF 527
Query: 356 KIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
KIR P +++LQ++ + +G + D+ A LGSLD + GEVDR
Sbjct: 528 KIRGPSFSNLQSLPEMAEGEYIPDLIAALGSLDTIMGEVDR 568
>gi|56480171|ref|NP_708522.2| large subunit of hydrogenase 3 (part of FHL complex) [Shigella
flexneri 2a str. 301]
gi|56383722|gb|AAN44229.2| large subunit of hydrogenase 3 (part of FHL complex) [Shigella
flexneri 2a str. 301]
gi|332753942|gb|EGJ84317.1| formate hydrogenlyase subunit 5 [Shigella flexneri K-671]
gi|332755607|gb|EGJ85970.1| formate hydrogenlyase subunit 5 [Shigella flexneri 2747-71]
gi|332765667|gb|EGJ95880.1| hydrogenase 4, large subunit [Shigella flexneri 2930-71]
gi|333015899|gb|EGK35235.1| formate hydrogenlyase subunit 5 [Shigella flexneri K-304]
Length = 569
Score = 314 bits (806), Expect = 1e-83, Method: Composition-based stats.
Identities = 95/393 (24%), Positives = 164/393 (41%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ HLLN+
Sbjct: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHPHLLNLGLACHFT 295
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ + +
Sbjct: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 355
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 356 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGLARDTRADHPFVGYGLL 415
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ ++ + ++ L GP+ +P + A
Sbjct: 416 PMEVHSEQGCDVISRLKVRINEVYTALNM----IDYGLDNLPGGPLMVEGFTYIPHRFAL 471
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 472 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 504
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++ I+GSLD + DR
Sbjct: 505 NWPTLRYMLRGNTVSYAPLIIGSLDPCYSCTDR 537
>gi|288557872|emb|CBJ34328.1| hydrogenase 3 large subunit [Enterobacter radicincitans]
Length = 569
Score = 314 bits (806), Expect = 1e-83, Method: Composition-based stats.
Identities = 99/393 (25%), Positives = 166/393 (42%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIVDADYRMFYVHRGMEKLAETRMGYNEVTF 235
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI +P R Q+IR + E+ R+ SHLLN+ V
Sbjct: 236 LSDRVCGICGFAHSTAYTTSVENAMGIVVPERAQMIRAILLEVERLHSHLLNLGLACHFV 295
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ + +
Sbjct: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDMLKDDMVQTRALVQQMRRD 355
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + + A + G M+R SG A D R P+ Y L
Sbjct: 356 VMELVDVLMSTPNIEQRTVGIGRLDPQIARDFSNVGPMVRASGHARDTRADHPFAGYGLL 415
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+ + D R VR+ E+ ++ +I ++ L G GP+ +P + A
Sbjct: 416 PMTVHSEQGCDVISRLKVRINEVLTALNMIDFGLDNLPG----GPLMVEGFTYIPHRFAL 471
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+G+ + ++ K YR + RA YA
Sbjct: 472 ---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 504
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ + D I+GSLD + DR
Sbjct: 505 NWPTLRYMLRGNTVFDAPLIIGSLDPCYSCTDR 537
>gi|254173390|ref|ZP_04880063.1| membrane bound hydrogenase, NiFe-hydrogenase large subunit 2
[Thermococcus sp. AM4]
gi|214032799|gb|EEB73628.1| membrane bound hydrogenase, NiFe-hydrogenase large subunit 2
[Thermococcus sp. AM4]
Length = 425
Score = 314 bits (806), Expect = 1e-83, Method: Composition-based stats.
Identities = 109/394 (27%), Positives = 170/394 (43%), Gaps = 31/394 (7%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
I FGP HP + IL LDGE + VD +G RG + + + ++Q + +R+
Sbjct: 10 IPFGPIHPGLEEPEKFILTLDGERIVDVDVKLGYNLRGIQWIALRRNYVQIMYLAERMCG 69
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ + H Y AVE+ GIE+P R + IRV+ E+ RI SHLLN+ A D+G T
Sbjct: 70 ICSFSHNHTYTRAVEEAAGIEVPERAEYIRVIVGELERIHSHLLNLGVLAHDIGYDTVLH 129
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
+ REK+M E +G+R++ + GGV +DI + I + I D+
Sbjct: 130 LTWLAREKVMDTLEAIAGNRVNYSMVTIGGVRRDIDEKRRRIILDMIKYYKEVFPQIEDI 189
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI- 249
+ + R + + A G G RGSG D R S+ Y +L +
Sbjct: 190 FLHDPTIEARFRDTAVISKRVALEQGAVGPTGRGSGIRDDARWSERLGVYPDLGIKPVMP 249
Query: 250 ------GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
GD +DR VR+ E+ +S+++I ++++ G + V +
Sbjct: 250 QDVTGERPRGDVFDRMAVRVGELWQSLELIEHALDQMPD----GKIKTFPKDNVLVAKLR 305
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLIS-DGGNKPYRCKIRAPGY 362
+ GE EAP+GE Y+ G +KP R K R P +
Sbjct: 306 IMV-------------------DGEGIGRYEAPRGELIHYVRGKKGSDKPLRWKPREPTF 346
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L A+ KG Q+AD + S+D DR
Sbjct: 347 PNLFAVAEGVKGDQVADFVVAVASIDPCLSCTDR 380
>gi|121534185|ref|ZP_01666010.1| NADH dehydrogenase (ubiquinone) [Thermosinus carboxydivorans Nor1]
gi|121307288|gb|EAX48205.1| NADH dehydrogenase (ubiquinone) [Thermosinus carboxydivorans Nor1]
Length = 360
Score = 314 bits (806), Expect = 1e-83, Method: Composition-based stats.
Identities = 110/389 (28%), Positives = 183/389 (47%), Gaps = 31/389 (7%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
++TI GP H A + ++++GE + +D G +HRG E L+ + Q + +R
Sbjct: 3 TYTIPVGPLHVALEEPMYFRVQVEGETIVGLDVTAGHVHRGMEYLVMKRNIYQNLTLIER 62
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ + N Y +A+EK+ GI+IP R + +RV+ EI RI S+L N A +G +
Sbjct: 63 VCSLCSNNHPFTYCMALEKIAGIKIPERAEYLRVIADEIKRIASNLFNAAMLAHIIGFDS 122
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
+ E RE + E G+RM A GGV D+ E ++ + D L +I
Sbjct: 123 LFMHVMELREIVQDTKETVYGNRMDLAANCIGGVKYDLSDEKIKYMMKQMDMLKKPLEEI 182
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
D+ N+ + R G + E+A +G G + RGSG +D+R PY Y ++ F++
Sbjct: 183 VDIYMNNKFVRARTEGAGILPKEEAIRYGVVGPVARGSGIDYDVRVKSPYAAYDKIKFNV 242
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
+ D R +VR+ E++E++ II+QC+ L
Sbjct: 243 AVENGCDVRARAMVRLREIQEAINIIQQCLKDLPDGPTCIDYL----------------- 285
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
+P GE A EAP+GE YL ++G +KP R K R P Y + +A
Sbjct: 286 --------------PEIPAGEAIAKSEAPRGELIYYLRTNGSDKPERIKWRVPTYMNWEA 331
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + G++++D+S I+ S+D +R
Sbjct: 332 LNVMMPGNKVSDISLIICSIDPCISCTER 360
>gi|90410734|ref|ZP_01218749.1| hydrogenase 4 subunit [Photobacterium profundum 3TCK]
gi|90328365|gb|EAS44663.1| hydrogenase 4 subunit [Photobacterium profundum 3TCK]
Length = 584
Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats.
Identities = 97/396 (24%), Positives = 167/396 (42%), Gaps = 36/396 (9%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
+ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 188 NDSNRIVPVGPLHITSDEPGHFRLFVDGEDIVDADYRMFYVHRGMEKLAETRMGYQEVAQ 247
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + Y+ +E L +++P R ++IR + E+ R+ SHLLN+ + V
Sbjct: 248 LTDRVCGICGFTHSVGYSNTIENALSVDVPFRAKMIRTVLLEVERLHSHLLNIGLSSHFV 307
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F REK M E +G+R GGV +D E
Sbjct: 308 GFDSGFMQFFRIREKTMELAELLTGARKTYGMNLIGGVRRDFLKEQRLKGIALVREVRKT 367
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQ--PYECYS 241
+++ D+L + R +G + + A + G +IR SG D R E Y
Sbjct: 368 FSELVDVLLATPNIESRIAGVGILAKDIARDFSPVGPLIRASGFKRDARIVHGQSLESYG 427
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
++ F++ ++GD R +VR+ E+ +S+ I+ ++ L +
Sbjct: 428 DVPFELQSMENGDVQSRVMVRIGEVFDSLNIVEYGLDHLPAGAIL--------------- 472
Query: 302 ADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
TEG+ VP EAP+GE + ++ K +R + RA
Sbjct: 473 -----------------TEGFDYVPNKFALGFTEAPRGENVHWSMTGDNQKLFRWRCRAA 515
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YA+ + ++ +G+ +AD I+GSLD + DR
Sbjct: 516 TYANWPTLRYMLRGNTVADAPLIIGSLDPCYSCTDR 551
>gi|304382882|ref|ZP_07365365.1| NADH dehydrogenase I [Prevotella marshii DSM 16973]
gi|304336067|gb|EFM02314.1| NADH dehydrogenase I [Prevotella marshii DSM 16973]
Length = 522
Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats.
Identities = 134/391 (34%), Positives = 210/391 (53%), Gaps = 29/391 (7%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ IN GPQHPA HGVLRL LDGE+++R+ PH G +HR EK+ E+ + Q +P+
Sbjct: 161 DDEYVINIGPQHPATHGVLRLQTVLDGEVIKRIYPHCGYIHRAVEKISESYLYPQILPFT 220
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DRLDY++ M HA +E+ +GIE+ R + IR + E+ R+ SHLL + D+GA
Sbjct: 221 DRLDYLSAMMNRHALVGVIEEAMGIELSDRIKYIRTIMDELQRLDSHLLFYSCCGQDLGA 280
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
LT ++G +RE+++ E +G R+ Y++ GG+ DI P ++ C+
Sbjct: 281 LTAFIYGMRDREEVLNVMEETTGGRLIQNYYKIGGLLDDIDPNFARNVKKLCEYIKPKFR 340
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ D+LTGN I + R N+G + E+ +G +G R +G A D+RK+ PY+ Y+++DF
Sbjct: 341 EYQDILTGNVILQNRFKNVGVLSKEEVISYGCTGGTGRAAGWANDVRKNHPYDLYNQVDF 400
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ +GD +DRY+VRM EM +SV I+ Q ++ + +
Sbjct: 401 KEIVYNNGDSFDRYMVRMKEMEQSVHILEQLIDNIPEGDFYIKQK--------------- 445
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
VP G+ Y + E +GE GVYL S G PYR K R G +
Sbjct: 446 --------------PVIKVPEGQWYFSCEGSRGEIGVYLDSRGDKMPYRLKFRPMGLPLV 491
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A++ C+G ++ D+ A+ S+D V ++DR
Sbjct: 492 AALDTACRGEKIGDLIAVGASMDYVIPDIDR 522
>gi|325298884|ref|YP_004258801.1| NADH-ubiquinone oxidoreductase chain 49kDa [Bacteroides
salanitronis DSM 18170]
gi|324318437|gb|ADY36328.1| NADH-ubiquinone oxidoreductase chain 49kDa [Bacteroides
salanitronis DSM 18170]
Length = 538
Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats.
Identities = 138/390 (35%), Positives = 203/390 (52%), Gaps = 29/390 (7%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
F ++ GPQHP+ HG LR+ + LDGE V++VDP +G +HRG EK+ E+ T+ Q + D
Sbjct: 178 DDFVVSMGPQHPSTHGALRMRIALDGEFVKKVDPILGYIHRGIEKMNESLTYPQTLGMTD 237
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDY++ HA + +E+ GIEI R + IR + E+ RI SHLL + +D+GA+
Sbjct: 238 RLDYLSAHQSRHALCMCIEQAAGIEISDRAKYIRTIMDELQRIDSHLLFYSCLVLDMGAM 297
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP +GF ERE ++ +E +G R+ Y GGV DI P + + + S + D
Sbjct: 298 TPFFYGFREREMVLDIFEETTGGRLIQHYNVIGGVQDDIHPTFCQKVKEFIKHLRSVIKD 357
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
D+ T N I R +G + EDA G +G R +G A D+RK PY Y ++DF
Sbjct: 358 YHDIFTNNVIADTRMKGVGILSKEDAISLGCTGGTGRAAGWANDVRKRHPYGLYDKVDFR 417
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
D + RY+VRM E+ ES +II Q ++ + G I+
Sbjct: 418 QITYNECDTFARYMVRMDEIMESCRIIEQLIDNI----PEGEFRVKTKPII--------- 464
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+P G +AVE+ +GEFGV + S G PYR R+ G +Q
Sbjct: 465 ----------------KLPEGIWTSAVESSRGEFGVMIESHGDKTPYRMHFRSTGLPLVQ 508
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AM+ +C+G + AD+ AI S D V ++DR
Sbjct: 509 AMDTMCRGWKFADLIAIGASADFVIPDIDR 538
>gi|302670767|ref|YP_003830727.1| ech hydrogenase subunit E EchE [Butyrivibrio proteoclasticus B316]
gi|302395240|gb|ADL34145.1| ech hydrogenase subunit E EchE [Butyrivibrio proteoclasticus B316]
Length = 360
Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats.
Identities = 100/387 (25%), Positives = 179/387 (46%), Gaps = 32/387 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I FGPQHP + L L ++ E V P IG +HRG EKL++ K F + V +R+
Sbjct: 6 VIPFGPQHPVLPEPIHLDLVMEDEKVVEAIPSIGFIHRGLEKLVDKKDFNEMVYVAERVC 65
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + Y+ A+E ++ I++P R + +R ++SE+ R+ SHLL + A G +
Sbjct: 66 GICSLGHGLGYSEAIEHIMDIDVPTRAKYLRTIWSELSRVHSHLLWLGLLADAFGFESLY 125
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ + RE + +E ++G R+ + + GG+ +D+ E+++D + L I+
Sbjct: 126 MDCWRLREDALDMFEESTGGRVIFSIMKVGGIRRDVSNEMLQDFYKRINKMEEDLKAIAK 185
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + R +G + E A G +G +R SG D+R Y Y ++DF+ I
Sbjct: 186 PFLTDAAVQTRLRGVGYLSAEQADLLGCAGPFLRASGVNRDIR-CTGYAAYGDIDFEPII 244
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD Y R R+ E+ ++ IIRQC++++
Sbjct: 245 STEGDSYARTECRIKEIFQAFDIIRQCIDKMPKDG------------------------- 279
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
++ +P GE +E P+GE Y+ ++G R ++R P +++L +
Sbjct: 280 ------EIDVPVKGMPNGEYMMRIEQPRGEALYYVKANGTKFIDRLRVRTPTFSNLPGLV 333
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVDR 396
KG LADV ++ ++D +R
Sbjct: 334 ETLKGCDLADVPILVLTIDPCISCTER 360
>gi|317054475|ref|YP_004118500.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Pantoea sp. At-9b]
gi|316952470|gb|ADU71944.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Pantoea sp. At-9b]
Length = 569
Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats.
Identities = 99/393 (25%), Positives = 165/393 (41%), Gaps = 34/393 (8%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVPY 64
S++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 177 SKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFL 236
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+ + AY +VE +GI +P R Q+IR + E+ R+ SHLLN+ VG
Sbjct: 237 SDRVCGICGFAHSTAYTSSVENAMGIVVPERAQMIRSILLEVERLHSHLLNLGLACHFVG 296
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
+ + F RE M E +G+R GG+ +D+ + + L
Sbjct: 297 FDSGFMQFFRVRELSMKMAEILTGARKTYGLNLIGGIRRDLMKDDMLQTRQLAQQMRREL 356
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
++D+L + R V IG + A + G M+R SG A D R P+ Y L
Sbjct: 357 FTLTDILLSTPNIESRTVGIGRLDPAIARDFSNVGPMVRASGHARDTRVDHPFAGYGLLP 416
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
++ D R VR+ E+ ++ +I ++ L G
Sbjct: 417 LEVHTLAGCDVLSRLKVRINEVFTALNLIDFGLDNLPGGA-------------------- 456
Query: 305 KRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
L EG+ +P EAP+G+ + ++ K +R + RA YA
Sbjct: 457 ------------LMVEGFTYIPHRFALGFSEAPRGDDIHWSMTGDNQKLFRWRCRAATYA 504
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 505 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537
>gi|139437057|ref|ZP_01771217.1| Hypothetical protein COLAER_00192 [Collinsella aerofaciens ATCC
25986]
gi|133776704|gb|EBA40524.1| Hypothetical protein COLAER_00192 [Collinsella aerofaciens ATCC
25986]
Length = 590
Score = 313 bits (803), Expect = 3e-83, Method: Composition-based stats.
Identities = 105/399 (26%), Positives = 170/399 (42%), Gaps = 35/399 (8%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETK-TFLQ 60
D K + + GP H + L ++GE + D + +HRG EK+ ET+ +
Sbjct: 179 DTKGKETTLVPMGPLHITSDEPGHFRLFVEGETIVDADYRLFYVHRGMEKVAETRLNYDA 238
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
DR+ + AYA AVE+ GI +P R Q IR + E+ R+ SHLLN+ +
Sbjct: 239 VTFLADRICGICGCAHSVAYAEAVERAQGIHVPPRAQYIRAIMLEVERLHSHLLNIGLAS 298
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
G + F REK M E+ SG R GGV +DI E
Sbjct: 299 HYTGFDSGFQQFFRVREKSMDLAEKLSGHRKTYGLNVIGGVRRDILAEQKLSTLTTIHQL 358
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
S + ++ D+L F +R IG + + A + G ++RGSG A D+R P++ Y
Sbjct: 359 RSEVQELVDVLLSTPNFIERTSGIGILDRKIARDFSPVGPLMRGSGYARDVRFDHPFDGY 418
Query: 241 SELD---FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIV 297
++ D D + R VR+ E+ +S+ + + +L GP+ +D +
Sbjct: 419 ADPDVQKMHAATADTCDAFGRTAVRIQEVYDSIDM----IETMLENCPSGPILTTDWEYT 474
Query: 298 PPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKI 357
P K A EAP+GE + + K YR +
Sbjct: 475 PHKY---------------------------AIGATEAPRGEDVHWAMLGNNQKCYRWRA 507
Query: 358 RAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+A Y++ + ++ +G+ + D + I+GSLD + DR
Sbjct: 508 KAATYSNWPVLRYMFRGNTVGDAALIVGSLDPCYSCTDR 546
>gi|119719988|ref|YP_920483.1| NADH dehydrogenase subunit D [Thermofilum pendens Hrk 5]
gi|119525108|gb|ABL78480.1| NADH dehydrogenase (ubiquinone) [Thermofilum pendens Hrk 5]
Length = 404
Score = 313 bits (803), Expect = 3e-83, Method: Composition-based stats.
Identities = 123/396 (31%), Positives = 193/396 (48%), Gaps = 6/396 (1%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + + + GPQHP++ G +R I+ L G+++ VDP IG +HR EKL E + ++
Sbjct: 15 LREGDESVYELFIGPQHPSS-GHMRFIVRLQGDVIVSVDPDIGYVHRTMEKLAEGREAIK 73
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+P +RL + N A+E+LL +E P R +R L SEI RI SHL +
Sbjct: 74 AIPLLERLTIIDSHNATVGLVTAMERLLDVEPPPRALYLRTLLSEINRIASHLYGMGIAG 133
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+ + T +W F +RE + E +G+R+ Y PGGV +D+P E
Sbjct: 134 IMLNHSTMFMWAFGDREVWLQLAEELTGARLTHTYSVPGGVRRDLPQGFGEKFEKAARYM 193
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L D + N R +G +K +A G G +R SG +D R + Y Y
Sbjct: 194 ERRLQDYMRIFLENPQVVARYEGVGVLKKSEASRLGVVGPNLRASGVKYDARLADDYGAY 253
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+L+F++P + GDC R LVR+ E+++S+ IIRQ + ++ GP+ + + P
Sbjct: 254 KDLEFEVPTREEGDCMARMLVRVEEIKQSISIIRQVLRKMPD----GPILSEKYLKLLPP 309
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ +R ++ F +P GE A E GE ++ DG KPYR ++ P
Sbjct: 310 KTR-ERVLQEGRVKFPALFASLKLPAGEAVARAEMGHGEIFYHITGDGSAKPYRLRVVTP 368
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ ++ +L GH+ D AI GSLD E DR
Sbjct: 369 SFRNVILFRYLAPGHRFMDFPAIYGSLDYFPPEADR 404
>gi|238784032|ref|ZP_04628047.1| Formate hydrogenlyase subunit 5 [Yersinia bercovieri ATCC 43970]
gi|238715009|gb|EEQ07006.1| Formate hydrogenlyase subunit 5 [Yersinia bercovieri ATCC 43970]
Length = 536
Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats.
Identities = 107/396 (27%), Positives = 168/396 (42%), Gaps = 32/396 (8%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQ 60
++ S S + GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 140 NEAGSSSRVVPIGPMHITSDEPGHFRLFVDGEDIIDADYRLFYVHRGMEKLAETRMGYND 199
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
DR+ + AY ++E LGI +P R Q+IR + E+ R+ SHLLN+
Sbjct: 200 VTFLSDRICGICGFTHSVAYTSSIENALGIIVPPRAQMIRTILLEVERLHSHLLNIGLSC 259
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
VG T + F REK M E +G+R GGV +DI
Sbjct: 260 HFVGFDTGFMQFFRVREKAMTIAEMLTGARKTYGLNLIGGVRRDILKADRIKTLQLVTEM 319
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ + + D+L +QR V +G + + A + G MIR SG A D+R Y Y
Sbjct: 320 RADIGQLVDMLMSTANIEQRTVGVGLLDRKIARDFSPVGPMIRASGFARDMRHDHTYANY 379
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+ + ++ D R LVR+ E +S+ +I +N + G GP+ P K
Sbjct: 380 ANVPKELFSLDGCDVNSRLLVRVREFFDSLVMIEYGLNHMPG----GPLLEERVHYQPYK 435
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
A EAP+GE + ++ K +R + RA
Sbjct: 436 FAL---------------------------GFSEAPRGEDVHWSMTGDNQKLFRWRCRAA 468
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 469 TYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 504
>gi|90578225|ref|ZP_01234036.1| hydrogenase 4 subunit [Vibrio angustum S14]
gi|90441311|gb|EAS66491.1| hydrogenase 4 subunit [Vibrio angustum S14]
Length = 584
Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats.
Identities = 94/396 (23%), Positives = 166/396 (41%), Gaps = 36/396 (9%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
+ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 188 DDSNRIVPVGPLHITSDEPGHFRLFVDGEDIVDADYRMFYVHRGMEKLAETRMGYHEVAQ 247
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + Y+ +E L +++P R ++IR + E+ R+ SHLLN+ + V
Sbjct: 248 LTDRVCGICGFTHSVGYSNTIENALSVDVPFRAKMIRTVLLEVERLHSHLLNIGLSSHFV 307
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F REK M E +G+R GGV +D +
Sbjct: 308 GFDSGFMQFFRVREKTMELAELLTGARKTYGMNLIGGVRRDFLKDQRLKGIAMVKEVRKT 367
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQ--PYECYS 241
+++ ++L + R +G + + A + G +IR SG D+R E Y
Sbjct: 368 FSELVEVLLATPNIESRIAGVGILSKQVARDYSPVGPLIRASGFKRDVRIIHGQSLESYG 427
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
++ ++ GD R +VR+ E+ +S+ I+ ++ L +
Sbjct: 428 DVPMELQTMDGGDVQSRVMVRIREVFDSLNIVEYGLDHLPPGAIL--------------- 472
Query: 302 ADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
TEG++ VP EAP+GE + ++ K +R + RA
Sbjct: 473 -----------------TEGFNYVPNKFALGFTEAPRGENVHWSMTGDNQKLFRWRCRAA 515
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YA+ + ++ +G+ +AD I+GSLD + DR
Sbjct: 516 TYANWPTLRYMLRGNTVADAPLIIGSLDPCYSCTDR 551
>gi|313902489|ref|ZP_07835891.1| NADH dehydrogenase (quinone) [Thermaerobacter subterraneus DSM
13965]
gi|313467287|gb|EFR62799.1| NADH dehydrogenase (quinone) [Thermaerobacter subterraneus DSM
13965]
Length = 403
Score = 313 bits (802), Expect = 4e-83, Method: Composition-based stats.
Identities = 142/395 (35%), Positives = 212/395 (53%), Gaps = 31/395 (7%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ + ++ GPQHP+ HGVLR++L L+GE + +P IG +HR EK E +T+ V
Sbjct: 39 DDEGQHMVLSMGPQHPSTHGVLRVVLTLEGETIVHAEPDIGFMHRNWEKQAEYRTYAMNV 98
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P+ DR DY+AP + E A+E+LLG+E+P R + +R+ E+ RI SH+L T +D
Sbjct: 99 PFADRNDYIAPFHNERLICEAIERLLGVEVPERARWLRLALCEMERIASHVLWAGTMGLD 158
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA+TP L+ + +RE + + SG R+ + R GG+ D P VE W D
Sbjct: 159 LGAVTPFLFAWRDREMYYMLVQELSGGRLFPQFMRIGGLRNDAPDGWVERALAWLDHMER 218
Query: 183 ALN-DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+ LL N ++ +R IG + A W SG ++RG G DLR S Y
Sbjct: 219 EAWPEYVQLLFDNEMYVRRTRGIGVLAPRQAVAWQASGPVLRGCGVPRDLRASDQGVPYR 278
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
EL F + + GD + R VR+ E+ ESV++ R+ + RL G GPV A P+ +
Sbjct: 279 ELGFRPVVAEGGDVWARNQVRIQEILESVRLAREALRRLPG----GPVMAKLPRALR--- 331
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
P GE+Y +E+P+G G+YL++ G PYR R+P
Sbjct: 332 -----------------------PTGEIYHEIESPRGVIGLYLVAGGDVMPYRAHWRSPC 368
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ HLQ + L +GH +AD++AI+GS+DIV EVDR
Sbjct: 369 FVHLQLLPLLARGHLVADMTAIIGSIDIVLCEVDR 403
>gi|288932069|ref|YP_003436129.1| NADH dehydrogenase (quinone) [Ferroglobus placidus DSM 10642]
gi|288894317|gb|ADC65854.1| NADH dehydrogenase (quinone) [Ferroglobus placidus DSM 10642]
Length = 411
Score = 313 bits (801), Expect = 4e-83, Method: Composition-based stats.
Identities = 126/396 (31%), Positives = 200/396 (50%), Gaps = 15/396 (3%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
D KS F + GPQH + G +RLI+ + G+ + V P G +HR EKL ET+ ++Q
Sbjct: 30 DAYKSDDFVVFVGPQHGGS-GHMRLIVRVKGDFIVEVIPDPGYVHRSMEKLAETRLYIQN 88
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+P F+R + N Y A+E L IE+P R + IR + +E+GRI +HL + A+
Sbjct: 89 IPLFERPSIIDFGNYNLGYVRAIEDALEIEVPERAKYIRTILAELGRIGTHLYDAGILAV 148
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
+G T +W F RE ++ + R +G+R+ ++ PGGV +D+ + + I ++
Sbjct: 149 FIGHTTGFMWPFAMREFIVEIFTRITGTRITGSFIVPGGVRRDVDEKTLNMIKRMLEALE 208
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+ + N R +G + EDA +G G +R SG +D+RK +PYE Y
Sbjct: 209 YRIKKFEKVFIKNPTTIARLREVGVLSKEDAVKYGVVGPFLRASGVEYDVRKVEPYEAYD 268
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
E+D+++ +G GD Y R LVR E+ +S+ I+RQ V+ + + + D I K+
Sbjct: 269 EVDWEMVVGDDGDGYTRLLVRAEEIYQSMNIVRQLVDNIPEGDVLS-----DDIIAFNKK 323
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG-GNKPYRCKIRAP 360
E+ + +P GE EA +G ++SDG PYR + P
Sbjct: 324 DIRGSFFEAYSNL--------VLPEGEYTTITEAARGTLLYTIVSDGESTTPYRVRFVTP 375
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +L+ CKGH+LAD+ AI GS E DR
Sbjct: 376 SWMYLKGFMEACKGHRLADLQAIYGSFGYFPPEADR 411
>gi|269216334|ref|ZP_06160188.1| hydrogenase-4 component G [Slackia exigua ATCC 700122]
gi|269130593|gb|EEZ61671.1| hydrogenase-4 component G [Slackia exigua ATCC 700122]
Length = 573
Score = 313 bits (801), Expect = 4e-83, Method: Composition-based stats.
Identities = 103/397 (25%), Positives = 162/397 (40%), Gaps = 34/397 (8%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETK-TFLQ 60
+ + + GP H + L ++GE + D + +HRG EK E + +
Sbjct: 176 ETGDRETTVVPMGPLHITSDEPGHFRLFVEGETIVDADYRLFYVHRGMEKCAEQRLNYDA 235
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ DR+ + AYA AVE GI++P+R Q IR + E+ R+ SHLLN+
Sbjct: 236 VTFFADRICGICGCAHSVAYAEAVENAQGIQVPLRAQYIRSIVLEVERLHSHLLNIGLVC 295
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
G T F REK M ER +G R GGV +DI E
Sbjct: 296 HYCGFDTGFNHFFRAREKSMDLAERITGHRKTYGLNLIGGVRRDILKEQ-AGTLQLVHEL 354
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ + + + L G F R IG + + A + G ++RGSG A D R P++ Y
Sbjct: 355 RAEVKSLVEELLGTPNFDSRTKGIGILDPKVARDYSPVGPLVRGSGFARDARHHHPFDGY 414
Query: 241 SE-LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
+ D+ D R LVR+ E +S+ + + LL GP+ D P
Sbjct: 415 THLKDWKPQFQTGCDVQSRTLVRVGEFFDSLDM----IEELLTNAPSGPILTEDWTYTPH 470
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
+ A EAP+GE + + K YR + +A
Sbjct: 471 RF---------------------------GVAVTEAPRGEDVHWAMVGDNQKCYRWRAKA 503
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Y++ + + +G+ ++D + I+GSLD + DR
Sbjct: 504 ATYSNWPVLRSMFRGNTVSDAALIVGSLDPCYSCTDR 540
>gi|14601398|ref|NP_147934.1| NADH dehydrogenase subunit D [Aeropyrum pernix K1]
gi|5105105|dbj|BAA80419.1| NuoD homolog [Aeropyrum pernix K1]
Length = 414
Score = 313 bits (801), Expect = 5e-83, Method: Composition-based stats.
Identities = 123/390 (31%), Positives = 194/390 (49%), Gaps = 3/390 (0%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+ I GPQHP + G +R+ + +DG+I+ DP IG +HR EKL E + +++ +P F+
Sbjct: 28 DLYEIYIGPQHPGS-GHMRITIRVDGDIIVEADPDIGYVHRTMEKLGEIRGWIKPIPLFE 86
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+ N Y LAVEKL+G+E P+R + +R L EI RI +HL + +G
Sbjct: 87 RMAIHDACNITLPYVLAVEKLMGVEPPLRAKYLRTLLCEINRIGAHLYGFAIFGVFLGHS 146
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
T +W +RE + E +G+R+ +Y PGG +DIP + + L++
Sbjct: 147 TMYMWAMGDREVFIELAEALTGARLTHSYPIPGGARRDIPADFPDMARRAVRYMRKRLDE 206
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ + N + + R +G + + A G G RGSG +D+R PY+ Y E+DF+
Sbjct: 207 YAKIFLNNPVIRSRLEGVGVIPKKAAAEMGIVGPNARGSGIDYDVRLVHPYDAYPEIDFE 266
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+P+ + GD R VR+ E+++S++II Q V L + V PP +
Sbjct: 267 VPVFEEGDALARTYVRVEEIKQSLRIIEQAVEWLEKHPREPIVDKYLYGKYPPLHKKVLE 326
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+ E VP G E +GE Y+ SDGG PYR +I ++
Sbjct: 327 A-EGRAKLLPTVAA-MKVPPGRAIGRAETGRGETVYYVESDGGVNPYRVRIVTASARNVI 384
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A +++ GH++ D+ AI GSLD E DR
Sbjct: 385 AFKYVLPGHRVMDIPAIYGSLDYFPPEADR 414
>gi|258646994|ref|ZP_05734463.1| carbon monoxide-induced hydrogenase, large subunit [Dialister
invisus DSM 15470]
gi|260404435|gb|EEW97982.1| carbon monoxide-induced hydrogenase, large subunit [Dialister
invisus DSM 15470]
Length = 361
Score = 313 bits (801), Expect = 5e-83, Method: Composition-based stats.
Identities = 110/391 (28%), Positives = 177/391 (45%), Gaps = 31/391 (7%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+S I FGPQHP + L LEL E V R P IG +HRG EKL+E + F Q V
Sbjct: 2 GKSTVIPFGPQHPVLPEPIHLDLELQDEKVVRAVPSIGYVHRGLEKLVELRDFQQYVYVA 61
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
+R+ + Y+ AVE+++ IE+P R + +R ++ E+ RI SHLL + A +G
Sbjct: 62 ERVCGICSFGHGWGYSRAVEEMMEIEVPPRAEWLRTIWHELSRIHSHLLWLGLAADAMGF 121
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ + + RE + E+ +G R+ + + GGV +DI +++++
Sbjct: 122 ESLFMESWRLREIDLDLIEQTTGGRIIFSVCKVGGVRRDIGGAVLKEMKRVLKDLSEKFL 181
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ ++ + R +G + +E+A G G M R SG D+R ++ Y +L F
Sbjct: 182 PMLNVFMDDDTVHSRLKGVGKLTMEEALELGCIGPMARASGILTDIRAAEKDSVYGQLHF 241
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
I GDCY R VR+ E+ SV+II C++ + V
Sbjct: 242 QPVIETDGDCYARARVRLREVLRSVEIIEGCIDNIPDGPIDVKVRG-------------- 287
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
P E + VE P+GE Y+ +G R ++R P A+L
Sbjct: 288 -----------------VPPKRECFVRVEQPRGEALYYVKGNGTKFLERFRLRTPTNANL 330
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A+ + +G LADV I+ ++D +R
Sbjct: 331 PALVKMLQGCDLADVPNIILTIDPCISCCER 361
>gi|288940084|ref|YP_003442324.1| NADH dehydrogenase (quinone) [Allochromatium vinosum DSM 180]
gi|288895456|gb|ADC61292.1| NADH dehydrogenase (quinone) [Allochromatium vinosum DSM 180]
Length = 360
Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats.
Identities = 111/391 (28%), Positives = 182/391 (46%), Gaps = 32/391 (8%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
S + + FGPQHP + L LELD E V R P IG +HRG E L E F++
Sbjct: 2 SNTTIVPFGPQHPVLPEPIHLDLELDDERVVRALPSIGYVHRGLELLAERYDFIEMANVA 61
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
+R+ + Y +E+L+G+EIP R +R +++EI RI SH+L + A +G
Sbjct: 62 ERICGICSFIHGQGYCQGIEQLMGVEIPPRAAYLRTVWAEISRIQSHVLWLGLAADALGY 121
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ + RE ++ E +G R+ + GG+ +D+ E + + +A +
Sbjct: 122 ESLFQHSWRIREMMVDIIEETTGGRVIFGVCKVGGIRKDVDDETLRGVRRRIGEIRAAFD 181
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+I+ + + +QR V +G + DA G G ++R SG A D R+ Y Y ELD+
Sbjct: 182 EIATIFRDDPTVRQRTVGVGLLSAADAHALGAVGPVLRASGVAHDTRRLG-YAAYGELDW 240
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ + + GDCY R LVR+ E+ +S +I QC++R+ V
Sbjct: 241 EPIVEQDGDCYARCLVRVREVDQSFDLITQCLDRMPTGEIEISVKG-------------- 286
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
P GE +E P+GE Y+ + G R ++R P +A++
Sbjct: 287 -----------------KRPKGEAMFRLEQPRGEVCYYISASGKKNLDRFRVRTPTFANI 329
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + KG +LADV I+ ++D +R
Sbjct: 330 APLIHMLKGCELADVPVIVLTIDPCVSCNER 360
>gi|187251537|ref|YP_001876019.1| NiFe-hydrogenase III large subunit [Elusimicrobium minutum Pei191]
gi|186971697|gb|ACC98682.1| NiFe-hydrogenase III large subunit [Elusimicrobium minutum Pei191]
Length = 402
Score = 312 bits (800), Expect = 6e-83, Method: Composition-based stats.
Identities = 119/388 (30%), Positives = 185/388 (47%), Gaps = 31/388 (7%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
T+ GPQHPA +L L+GE + +G HRG EK E++ +LQA+ +R+
Sbjct: 4 ITVPLGPQHPALKEPGNFMLLLEGEQIVDATLRLGYNHRGVEKAAESRNYLQAMYLIERV 63
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+ + Y + VE++ G E+P R Q IRV+ E+ R+ SHLL + A ++G T
Sbjct: 64 CGICSHSHATCYVMNVEEIAGAEVPKRAQAIRVIIGELERLHSHLLWLGVAAHEIGFDTL 123
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
++ + +RE +M E SG+R+H + GGV +DI PE+V+ + + +
Sbjct: 124 FMYSWRDRESVMDALETISGNRVHYSINTIGGVRRDITPEMVKTVLMKIEHLEKRVKYYI 183
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
L T R +G + E+A +G + R SG A D+RK PY Y ELDF +
Sbjct: 184 SLATEEPTVIARTKGVGHLPKEEALRRCAAGPLARASGIARDVRKDDPYLIYGELDFKVI 243
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
D + R VR EM ES ++++Q +N L V
Sbjct: 244 TSDACDVFGRLYVRAFEMLESCRLLKQVLNWLPEGAIKVNV------------------- 284
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
+P G EAP+GE Y+ SDGG P R K+RAP A+ +++
Sbjct: 285 ------------PVKIPAGHAVNRYEAPRGEDVHYVKSDGGLNPARVKVRAPTLANFESV 332
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVDR 396
+++ +G LAD + I+ ++D F DR
Sbjct: 333 DYMLRGDALADAALIIAAIDPCFSCTDR 360
>gi|330448645|ref|ZP_08312293.1| hydrogenase 4, large subunit [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328492836|dbj|GAA06790.1| hydrogenase 4, large subunit [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 584
Score = 312 bits (799), Expect = 7e-83, Method: Composition-based stats.
Identities = 95/396 (23%), Positives = 167/396 (42%), Gaps = 36/396 (9%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
+ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 188 DDSNRIVPVGPLHITSDEPGHFRLFVDGEDIVDADYRMFYVHRGMEKLAETRMGYHEVAQ 247
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + Y+ +E L +++P R ++IR + E+ R+ SHLLN+ + V
Sbjct: 248 LTDRVCGICGFTHSVGYSNTIENALSVDVPFRAKMIRTVLLEVERLHSHLLNIGLSSHFV 307
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F REK M E +G+R GGV +D E
Sbjct: 308 GFDSGFMQFFRVREKTMELAELLTGARKTYGMNLIGGVRRDFLKEQRLKGIAMVKEVRKT 367
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQ--PYECYS 241
+++ ++L + R +G + + A + G +IR SG D+R E Y
Sbjct: 368 FSELVEVLLATPNIESRIAGVGILSKDIARDYSPVGPLIRASGFKRDVRIVHGQSLESYG 427
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ ++ ++GD R +VR+ E+ +S+ I+ ++ L +
Sbjct: 428 SVPIELQSMENGDVQSRVMVRIREVFDSLNIVEYGLDHLPPGAIL--------------- 472
Query: 302 ADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
TEG++ VP EAP+GE + ++ K +R + RA
Sbjct: 473 -----------------TEGFNYVPNKFALGFTEAPRGENVHWSMTGDNQKLFRWRCRAA 515
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YA+ + ++ +G+ +AD I+GSLD + DR
Sbjct: 516 TYANWPTLRYMLRGNTVADAPLIIGSLDPCYSCTDR 551
>gi|269104122|ref|ZP_06156818.1| hydrogenase 4 subunit [Photobacterium damselae subsp. damselae CIP
102761]
gi|268160762|gb|EEZ39259.1| hydrogenase 4 subunit [Photobacterium damselae subsp. damselae CIP
102761]
Length = 581
Score = 312 bits (799), Expect = 7e-83, Method: Composition-based stats.
Identities = 96/396 (24%), Positives = 171/396 (43%), Gaps = 36/396 (9%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
+ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 185 NDSNRIVPVGPLHITSDEPGHFRLFVDGEDIVDADYRMFYVHRGMEKLAETRMGYHEVAQ 244
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + Y+ +E L +++P R ++IR + E+ R+ SHLLN+ + V
Sbjct: 245 LTDRVCGICGFTHSVGYSNTIENALDVDVPFRAKMIRTVLLEVERLHSHLLNIGLSSHFV 304
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F REK M E +G+R GGV +D E +
Sbjct: 305 GFDSGFMQFFRIREKTMELAELLTGARKTYGMNLIGGVRRDFLKEQRTKGIAMVREVRQS 364
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQ--PYECYS 241
+++ ++L R +G + E A + G +IRG+G D+R +E YS
Sbjct: 365 FSELVEMLLATPNIDSRICGVGILSKEIARNYSPVGPLIRGTGFKRDVRVIHGQQFEAYS 424
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
++ ++ ++GD R +VR+ E+ +++ I+ ++ L +
Sbjct: 425 KVPIELQTMENGDVQSRVMVRIREVFDALNIVEFGLDNLPAGAIL--------------- 469
Query: 302 ADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
TEG++ VP EAP+GE + ++ K +R + RA
Sbjct: 470 -----------------TEGFNYVPNKFALGFTEAPRGENVHWSMTGDNQKLFRWRCRAA 512
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YA+ + ++ +G+ +AD I+GSLD + DR
Sbjct: 513 TYANWPTLRYMLRGNTVADAPLIIGSLDPCYSCTDR 548
>gi|260768585|ref|ZP_05877519.1| hydrogenase 4 subunit [Vibrio furnissii CIP 102972]
gi|260616615|gb|EEX41800.1| hydrogenase 4 subunit [Vibrio furnissii CIP 102972]
Length = 581
Score = 312 bits (799), Expect = 7e-83, Method: Composition-based stats.
Identities = 100/398 (25%), Positives = 170/398 (42%), Gaps = 34/398 (8%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQ 60
++ + + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 181 ERGDDSNRIVPVGPMHITSDEPGHFRLFVDGEDIVDADYRMFYVHRGMEKLAETRMGYHE 240
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
DR+ + YA VE L +++P+R ++IR + E+ R+ SHLLN+ +
Sbjct: 241 VGFLADRVCGICGFTHSVGYANTVENSLNVQVPLRAKMIRTILLEVERLHSHLLNIGLSS 300
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
VG + + F REK M E +G+R GGV +D E
Sbjct: 301 HFVGFDSGFMQFFRVREKTMELAELLTGARKTYGMNLIGGVRRDFLKAQREKGIAMVREV 360
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQ--PYE 238
+ ++ ++L R V +G + + A + G +IRGSG D+R E
Sbjct: 361 RHSFQELVEVLLSTPNIDSRLVGVGVLAKDIARDFSPVGPLIRGSGFERDVRVVHGQSLE 420
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
Y+ + ++ +GD R +VR+ E+ +S+ II ++ L G + D + P
Sbjct: 421 AYANVPIELQHMGNGDVQSRVIVRIREVLDSLNIIEYGLDNLPA----GAILTEDFEYTP 476
Query: 299 PKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
K A EAP+GE + ++ K +R + R
Sbjct: 477 HKFAL---------------------------GFTEAPRGENVHWSMTGDNQKLFRWRCR 509
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ +AD I+GSLD + DR
Sbjct: 510 AATYANWPTLRYMLRGNTVADAPLIIGSLDPCYSCTDR 547
>gi|315180294|gb|ADT87208.1| hydrogenase-4 component G [Vibrio furnissii NCTC 11218]
Length = 581
Score = 312 bits (799), Expect = 8e-83, Method: Composition-based stats.
Identities = 100/398 (25%), Positives = 170/398 (42%), Gaps = 34/398 (8%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQ 60
++ + + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 181 ERGDDSNRIVPVGPMHITSDEPGHFRLFVDGEDIVDADYRMFYVHRGMEKLAETRMGYHE 240
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
DR+ + YA VE L +++P+R ++IR + E+ R+ SHLLN+ +
Sbjct: 241 VGFLADRVCGICGFTHSVGYANTVENSLNVQVPLRAKMIRTILLEVERLHSHLLNIGLSS 300
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
VG + + F REK M E +G+R GGV +D E
Sbjct: 301 HFVGFDSGFMQFFRVREKTMELAELLTGARKTYGMNLIGGVRRDFLKAQREKGIAMVREV 360
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQ--PYE 238
+ ++ ++L R V +G + + A + G +IRGSG D+R E
Sbjct: 361 RHSFQELVEVLLSTPNIDSRLVGVGVLAKDIARDFSPVGPLIRGSGFERDVRVVHGQSLE 420
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
Y+ + ++ +GD R +VR+ E+ +S+ II ++ L G + D + P
Sbjct: 421 AYANVPIELQHMGNGDVQSRVIVRIREVLDSLNIIEYGLDNLPA----GAILTEDFEYTP 476
Query: 299 PKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
K A EAP+GE + ++ K +R + R
Sbjct: 477 HKFAL---------------------------GFTEAPRGENVHWSMTGDNQKLFRWRCR 509
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ +AD I+GSLD + DR
Sbjct: 510 AATYANWPTLRYMLRGNTVADAPLIIGSLDPCYSCTDR 547
>gi|240102094|ref|YP_002958402.1| membrane bound hydrogenase, MbhL subunit (MbhL) [Thermococcus
gammatolerans EJ3]
gi|239909647|gb|ACS32538.1| membrane bound hydrogenase, MbhL subunit (MbhL) [Thermococcus
gammatolerans EJ3]
Length = 425
Score = 311 bits (798), Expect = 9e-83, Method: Composition-based stats.
Identities = 110/394 (27%), Positives = 172/394 (43%), Gaps = 31/394 (7%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
I FGP HP + IL LDGE + VD +G RG + + + ++Q + +R+
Sbjct: 10 IPFGPIHPGLEEPEKFILTLDGERIVDVDVKLGYNLRGIQWIALRRNYIQIMYLAERICG 69
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ + H Y AVE+ GIE+P R + IRV+ E+ RI SHLLN+ A D+G T
Sbjct: 70 ICSFSHNHTYTRAVEEAAGIEVPERAEYIRVIIGELERIHSHLLNLGVLAHDIGYDTVLH 129
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
+ REK+M E +G+R++ + GGV +DI + I + I D+
Sbjct: 130 LTWLAREKVMDTLEAVAGNRVNYSMVTIGGVRRDIDEKRRRIILDMIKYYKEVFPQIEDI 189
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI- 249
+ + R + + A G G RGSG D R S+ Y +L +
Sbjct: 190 FLHDPTIEARFRDCAVISRRVALEQGAVGPTGRGSGIRDDARWSEKLGVYPDLGIKPVMP 249
Query: 250 ------GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
GD +DR VR+ E+ +S+++I ++ + KI + +
Sbjct: 250 QDVTGERPRGDVFDRMAVRIGELWQSLELIEHALDGMPDG-----------KIKAFPKDN 298
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLIS-DGGNKPYRCKIRAPGY 362
+ + L+ GE EAP+GE Y+ G +KP R K R P +
Sbjct: 299 VLYAKLRLMV------------DGEGIGRYEAPRGELVHYVRGKKGSDKPLRWKPREPTF 346
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L A+ KG Q+AD + S+D DR
Sbjct: 347 PNLFAVAEGVKGDQVADFVVAVASIDPCLSCTDR 380
>gi|313127384|ref|YP_004037654.1| NADH dehydrogenase subunit d; NADH dehydrogenase subunit c
[Halogeometricum borinquense DSM 11551]
gi|312293749|gb|ADQ68209.1| NADH dehydrogenase subunit D; NADH dehydrogenase subunit C
[Halogeometricum borinquense DSM 11551]
Length = 550
Score = 311 bits (798), Expect = 1e-82, Method: Composition-based stats.
Identities = 149/403 (36%), Positives = 218/403 (54%), Gaps = 32/403 (7%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFL-Q 60
D + + +N GP HPA HGVL L + LDGE V +DP IG +HR E++ ++KT+ Q
Sbjct: 172 DSRDGDTLFLNVGPHHPATHGVLHLKVTLDGEHVVDLDPEIGYIHRCEEQMCQSKTYRHQ 231
Query: 61 AVPYFDRLD-YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+PY DR D + E AYA E L I++P Q+IR + +E+ R+LSH L++
Sbjct: 232 IMPYPDRWDWGGGGLLNEWAYARTAETLADIDVPEYAQVIRTMTAELSRMLSHFLSIGAY 291
Query: 120 AMDV--GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP---ELVEDIG 174
A+DV ++ +RE++ E +G R+ YFR GGV D+P E E +
Sbjct: 292 ALDVTGDFTATFMYAIRDREQIQNILEDVTGQRLMFNYFRLGGVVWDLPEPREEFFEKVY 351
Query: 175 CWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKS 234
+ D P L + DLLTGN + + R+V+ G + E A +G +G + RGSG +DLR+
Sbjct: 352 NFVDGLPQKLAEYHDLLTGNEVLQLRSVDTGILPAEVAKSYGCTGPVARGSGIEYDLRRD 411
Query: 235 QPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKV-GPVSASD 293
PY Y+ELD+++ GD + R LVRM E+ ES +I+ QC L + + ++
Sbjct: 412 DPYGYYNELDWNVVTEPDGDNFSRLLVRMREIEESARIVEQCAELLADWPEDDRTIQSNV 471
Query: 294 PKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPY 353
P+ + P EVY AVE KGE G+Y+ SDG KP
Sbjct: 472 PRTIRPDDDT------------------------EVYRAVEGAKGELGIYIRSDGTEKPA 507
Query: 354 RCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
R KIR P +++LQA+ + +G + D+ A LGSLD + GEVDR
Sbjct: 508 RFKIRGPSFSNLQALPEIAEGGLIPDLIASLGSLDTIMGEVDR 550
>gi|159041011|ref|YP_001540263.1| NADH dehydrogenase subunit D [Caldivirga maquilingensis IC-167]
gi|157919846|gb|ABW01273.1| NADH dehydrogenase (quinone) [Caldivirga maquilingensis IC-167]
Length = 424
Score = 311 bits (798), Expect = 1e-82, Method: Composition-based stats.
Identities = 121/396 (30%), Positives = 202/396 (51%), Gaps = 7/396 (1%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ KS + + GP HP + G +R+IL L G+ + P G +HR EKL ET+ F+
Sbjct: 35 EAYKSDEYLVLIGPAHPGS-GHMRIILRLKGDYIVEAVPDPGYVHRSVEKLAETRLFVHN 93
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+P +R +H Y A+E+L +++P R Q +RV+ E+ RI HL + A+
Sbjct: 94 IPLVERPTIAESSIMDHGYVRAIEELGQLDVPPRAQYLRVIMDELSRIGDHLYDTGILAV 153
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
+G T +WGF RE ++ R +G+R+ ++ P GV D+ P+++ I
Sbjct: 154 FLGHSTGYMWGFGLRELIVDALARMTGARITVSFVIPSGVRWDVHPDVLRYIYNMTFFIE 213
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
++++ + T N + R ++G + + G G +R G +D R+++PY Y
Sbjct: 214 KKIDELGTIFTKNPVTVSRMKDVGVLTKDQCIKLGAVGPFLRACGVEYDNRRARPYAVYD 273
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+L+++IP+ GD Y R+LVR+ E+R+S+ IIRQ V + GPV + P +
Sbjct: 274 QLEWEIPVADEGDAYSRFLVRVEEIRQSLNIIRQAVKNI----PEGPVIGNKLMTRVPPK 329
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG-GNKPYRCKIRAP 360
K + + + F+L G +P GE EA +G L+SDG N PYR ++ P
Sbjct: 330 EREKVAKDIRNYLFRLLI-GLTLPEGEATTLTEAARGTLLYSLVSDGKSNVPYRLRMITP 388
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +L+ +G++L D+ AI GS E DR
Sbjct: 389 SWYNLKPFMESLRGYRLMDLPAIYGSWGYFPPEADR 424
>gi|218883728|ref|YP_002428110.1| NADH-ubiquinone oxidoreductase, chain 49 kDa [Desulfurococcus
kamchatkensis 1221n]
gi|218765344|gb|ACL10743.1| NADH-ubiquinone oxidoreductase, chain 49 kDa [Desulfurococcus
kamchatkensis 1221n]
Length = 405
Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats.
Identities = 112/390 (28%), Positives = 176/390 (45%), Gaps = 28/390 (7%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
+ I GPQHPA H + L DGE + +VD + G HRG EKL E +F + + R
Sbjct: 12 TLEIPVGPQHPALHEPVLLKAYADGEEIVKVDINTGYNHRGIEKLCEKNSFYRDIFIVGR 71
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ + +AY A+E +L + R + +RVL E+ RI SH+L A ++G
Sbjct: 72 VCGICNAVHANAYVRALEAILDVTPNNRARYLRVLAMELERIHSHMLINAVMAENIGFEA 131
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
+ +REK+M E +G+R+ A Y GGV +DI + + +
Sbjct: 132 LFMNIMLDREKVMKAKEIVTGARVMADYMMVGGVRRDIDDVKRDKLRKLISELRPRVEYY 191
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ + +R +++G +K D G G + R SG D R S Y+ Y+E+ FD+
Sbjct: 192 RKVFEEDETILKRLIDVGRLKPVDVTSHGLLGPVARASGVKIDTRASDRYDAYNEIPFDV 251
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
GD + R +VR E+ E++ ++ + +L P P+
Sbjct: 252 VTRNEGDSWARMMVRWDEVLEAINMVEYILEKLPSDGNPVPDEKKLPR------------ 299
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNK-PYRCKIRAPGYAHLQ 366
P+GE Y VEA +GE Y++SDG PYR KIR P + ++
Sbjct: 300 ---------------KFPLGEAYTRVEAQRGELTYYVMSDGKGMNPYRVKIRTPSFNNII 344
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
F+ GH + D+ IL SLD ++R
Sbjct: 345 NTGFMYIGHTIPDLPVILTSLDPCISCMER 374
>gi|89074818|ref|ZP_01161272.1| hydrogenase-4 component G [Photobacterium sp. SKA34]
gi|89049393|gb|EAR54955.1| hydrogenase-4 component G [Photobacterium sp. SKA34]
Length = 577
Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats.
Identities = 96/395 (24%), Positives = 161/395 (40%), Gaps = 34/395 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
+ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 181 DDSNRIVPVGPLHITSDEPGHFRLFVDGEDIVDADYRMFYVHRGMEKLAETRMGYHEVAQ 240
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + Y+ +E L +++P R ++IR + E+ R+ SHLLN+ + V
Sbjct: 241 LTDRVCGICGFTHSVGYSNTIENALSVDVPFRAKMIRTVLLEVERLHSHLLNIGLSSHFV 300
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F REK M E +G+R GGV +D E
Sbjct: 301 GFDSGFMQFFRVREKTMELAEILTGARKTYGMNLIGGVRRDFLKEQRLKGIALVKEVRKT 360
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQ--PYECYS 241
++ ++L + R +G + + A + G +IR SG D+R E Y
Sbjct: 361 FTELVEVLLATPNIESRIAGVGILSKQVARDYSPVGPLIRASGFNRDVRTVHGQSLESYG 420
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
++ ++ GD R +VR+ E+ +S+ I V L G + VP K
Sbjct: 421 DVPMELQTMDGGDVQSRVMVRIREVFDSLNI----VEYGLDHLPPGAILTESFDYVPNKF 476
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
A EAP+GE + ++ K +R + RA
Sbjct: 477 AL---------------------------GFTEAPRGENVHWSMTGDNQKLFRWRCRAAT 509
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YA+ + ++ +G+ +AD I+GSLD + DR
Sbjct: 510 YANWPTLRYMLRGNTVADAPLIIGSLDPCYSCTDR 544
>gi|256826555|ref|YP_003150514.1| Ni,Fe-hydrogenase III large subunit [Cryptobacterium curtum DSM
15641]
gi|256582698|gb|ACU93832.1| Ni,Fe-hydrogenase III large subunit [Cryptobacterium curtum DSM
15641]
Length = 576
Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats.
Identities = 101/398 (25%), Positives = 158/398 (39%), Gaps = 34/398 (8%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
D + + + GP H + L ++GE + D + +HRG EK+ E++ A
Sbjct: 177 DTGEHETTIMPMGPLHITSDEPGHFRLFVEGENIIDADYRLFYVHRGMEKVAESRMNYDA 236
Query: 62 VP-YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
V DR+ + AYA AVE GIE+P R Q IR + E+ R+ SHLLN+
Sbjct: 237 VTFLADRVCGICGNAHSVAYAEAVEHAQGIEVPERAQYIRAISLEVERMHSHLLNLGLVC 296
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
G T F RE M E +G R GGV +DI E D
Sbjct: 297 HYCGFDTGFQHFFRVREDSMRLAELLTGHRKTYGINLIGGVRRDILSEQKLATFKAVDKL 356
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ + D L F R +G + + A + G +RGSG D+R P++ Y
Sbjct: 357 RKDVKGLVDELMSTPNFIDRTKGVGRLDPQIARAFSPVGPCMRGSGFTRDVRFDHPFDGY 416
Query: 241 SE--LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
F D R +VR+ E +S ++ ++ GP+ D P
Sbjct: 417 KFLPDTFKARSHDGCDVMSRSMVRIEEFLDSCDMVEYLLDN----APEGPILTQDWTYTP 472
Query: 299 PKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
K A EAP+GE + + K YR + +
Sbjct: 473 HKYAL---------------------------GYTEAPRGEDTHWAMVGDNQKCYRWRAK 505
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A Y++ + ++ +G+ ++D + I+GS+D + DR
Sbjct: 506 AATYSNWPILRYMFRGNTISDAALIVGSMDPCYSCTDR 543
>gi|320101010|ref|YP_004176602.1| NADH-ubiquinone oxidoreductase subunit 49kDa [Desulfurococcus
mucosus DSM 2162]
gi|319753362|gb|ADV65120.1| NADH-ubiquinone oxidoreductase chain 49kDa [Desulfurococcus mucosus
DSM 2162]
Length = 406
Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats.
Identities = 113/390 (28%), Positives = 171/390 (43%), Gaps = 28/390 (7%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
+ + GPQHPA H L L DGE + RVD + G HRG EKL E +F + + R
Sbjct: 12 TLELPVGPQHPALHEPLLLKAYADGEEIVRVDVNTGYNHRGIEKLCERNSFYKDIFIVGR 71
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ + + Y A+E +LG+ R + +RVL E+ RI SH+L A ++G
Sbjct: 72 VCGICNAVHTNVYVRALEAILGVTPNRRAKYLRVLAMELERIHSHMLINAVMAENIGFEN 131
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
+ +RE++M E +G R+ A Y GGV +DI + + +
Sbjct: 132 LFMNIMLDRERVMKAKEIVTGGRVLADYMMVGGVRRDIDDVKRDRLRKLLTELKPRVEYY 191
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ + +R V +G +K D G G + R SG D R S Y+ Y E+ F++
Sbjct: 192 RKVFEEDETILKRLVGVGRLKPVDVTSHGLLGPVARASGVKIDARASDKYDAYDEVSFNV 251
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
GD + R +VR E ES+++ +++L P P+
Sbjct: 252 VTRTEGDSWARMMVRWDETLESIEMALFILDKLPSDGSPVPDEKKLPR------------ 299
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNK-PYRCKIRAPGYAHLQ 366
P GE Y VEA +GE Y++SDG PYR KIR P ++
Sbjct: 300 ---------------KFPPGEAYTRVEAQRGELAYYVMSDGKGMNPYRVKIRTPSVNNII 344
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
FL G+ + D+ IL SLD ++R
Sbjct: 345 NTGFLYVGYTIPDLPVILTSLDPCVSCMER 374
>gi|14591229|ref|NP_143306.1| NADH-ubiquinone oxidoreductase subunit [Pyrococcus horikoshii OT3]
gi|3257861|dbj|BAA30544.1| 427aa long hypothetical NADH-ubiquinone oxidoreductase subunit
[Pyrococcus horikoshii OT3]
Length = 427
Score = 309 bits (793), Expect = 4e-82, Method: Composition-based stats.
Identities = 109/394 (27%), Positives = 175/394 (44%), Gaps = 31/394 (7%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
I FGP HP + IL LDGE + VD +G RG + + + ++Q + +R+
Sbjct: 11 IPFGPIHPGLEEPEKFILTLDGERIVNVDIKLGYNLRGIQWIAFRRNYVQLMYLAERICG 70
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ + H Y AVE++ GIE+P R + IR + E+ RI SHLLN+ D+G T
Sbjct: 71 ICSFSHNHTYVRAVEEMAGIEVPERAEYIRAIIGELERIHSHLLNLGVVGHDIGYDTVLH 130
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
+ REK+M E +G+R++ + GGV +DI + + + + I D+
Sbjct: 131 LTWLAREKVMDALEAITGNRVNYSMMTIGGVRRDIEEKHKRLLLDMIKYYREIMPQIEDV 190
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI- 249
+ + R N V + A G G RGSG D R S+ Y +L +
Sbjct: 191 FLHDSTIEARLRNCAVVPRKLAIEMGAVGPTGRGSGIKDDARWSEKLGVYPDLGIKPVMP 250
Query: 250 ------GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
GD YDR VR+ E+ +S+++I ++++ KI + +
Sbjct: 251 EDVTGEKARGDVYDRTAVRIGEIYQSLELIEHALDQMPEG-----------KIKAFPKDN 299
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLIS-DGGNKPYRCKIRAPGY 362
+ + L+ GE EAP+GE Y+ G + P R K+R P +
Sbjct: 300 ILVAKLKLLG------------DGEGIGRYEAPRGELIHYVKGKKGRDGPVRWKMREPTF 347
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L + +G+QLADV + S+D DR
Sbjct: 348 PNLFTIAKGLEGNQLADVVVAIASIDPCLSCTDR 381
>gi|16130412|ref|NP_416982.1| hydrogenase 4, subunit [Escherichia coli str. K-12 substr. MG1655]
gi|89109293|ref|AP_003073.1| hydrogenase 4, subunit [Escherichia coli str. K-12 substr. W3110]
gi|170019229|ref|YP_001724183.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Escherichia coli
ATCC 8739]
gi|170082097|ref|YP_001731417.1| hydrogenase 4, subunit [Escherichia coli str. K-12 substr. DH10B]
gi|194437605|ref|ZP_03069701.1| hydrogenase-4, G subunit [Escherichia coli 101-1]
gi|238901652|ref|YP_002927448.1| hydrogenase 4, subunit [Escherichia coli BW2952]
gi|253772621|ref|YP_003035452.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254162461|ref|YP_003045569.1| hydrogenase 4, subunit [Escherichia coli B str. REL606]
gi|300930124|ref|ZP_07145546.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
187-1]
gi|300951813|ref|ZP_07165626.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
116-1]
gi|300958886|ref|ZP_07170992.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
175-1]
gi|301023872|ref|ZP_07187603.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
196-1]
gi|301644477|ref|ZP_07244474.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
146-1]
gi|307139121|ref|ZP_07498477.1| hydrogenase 4, subunit [Escherichia coli H736]
gi|2499315|sp|P77329|HYFG_ECOLI RecName: Full=Hydrogenase-4 component G
gi|1616956|gb|AAB88569.1| HyfG [Escherichia coli]
gi|1788832|gb|AAC75540.1| hydrogenase 4, subunit [Escherichia coli str. K-12 substr. MG1655]
gi|85675422|dbj|BAA16375.2| hydrogenase 4, subunit [Escherichia coli str. K12 substr. W3110]
gi|169754157|gb|ACA76856.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Escherichia coli
ATCC 8739]
gi|169889932|gb|ACB03639.1| hydrogenase 4, subunit [Escherichia coli str. K-12 substr. DH10B]
gi|194423411|gb|EDX39402.1| hydrogenase-4, G subunit [Escherichia coli 101-1]
gi|238861467|gb|ACR63465.1| hydrogenase 4, subunit [Escherichia coli BW2952]
gi|242378085|emb|CAQ32858.1| hydrogenase 4, large subunit, subunit of hydrogenase 4 [Escherichia
coli BL21(DE3)]
gi|253323665|gb|ACT28267.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253974362|gb|ACT40033.1| hydrogenase 4, subunit [Escherichia coli B str. REL606]
gi|253978529|gb|ACT44199.1| hydrogenase 4, subunit [Escherichia coli BL21(DE3)]
gi|260448434|gb|ACX38856.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Escherichia coli
DH1]
gi|299880626|gb|EFI88837.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
196-1]
gi|300314488|gb|EFJ64272.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
175-1]
gi|300448960|gb|EFK12580.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
116-1]
gi|300461968|gb|EFK25461.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
187-1]
gi|301077222|gb|EFK92028.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
146-1]
gi|315137110|dbj|BAJ44269.1| hydrogenase 4, subunit [Escherichia coli DH1]
gi|315615730|gb|EFU96362.1| hydrogenase-4 component G [Escherichia coli 3431]
Length = 555
Score = 309 bits (793), Expect = 4e-82, Method: Composition-based stats.
Identities = 102/398 (25%), Positives = 162/398 (40%), Gaps = 50/398 (12%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E GSR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A DLR PY
Sbjct: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYAD 397
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 398 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 442
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 443 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 485
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 486 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523
>gi|57642026|ref|YP_184504.1| membrane bound hydrogenase, NiFe-hydrogenase large subunit 2
[Thermococcus kodakarensis KOD1]
gi|57160350|dbj|BAD86280.1| membrane bound hydrogenase, NiFe-hydrogenase large subunit 2
[Thermococcus kodakarensis KOD1]
Length = 426
Score = 309 bits (793), Expect = 4e-82, Method: Composition-based stats.
Identities = 111/404 (27%), Positives = 171/404 (42%), Gaps = 31/404 (7%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M +K I FGP HP + IL LDGE + VD +G RG + + + ++Q
Sbjct: 1 MTEKVEYWVKIPFGPIHPGLEEPEKFILTLDGERIVDVDVKLGYNLRGIQWIALRRNYIQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ +R+ + + H Y AVE+ GIE+P R + IRV+ E+ RI SHLLN+ A
Sbjct: 61 IMYLAERMCGICSFSHNHTYTRAVEEAGGIEVPERAEYIRVIIGELERIHSHLLNLGVLA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+G T + REK+M E SG+R++ + GGV +DI + I +
Sbjct: 121 HDIGYDTLLHLTWLAREKVMDTLEAVSGNRVNYSMVTIGGVRRDIDEKKRRIIEEMIKYY 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
I + + + R + + A G G RGSG D R S+ Y
Sbjct: 181 REVFPQIEEAFLHDPTIEARFRDTAVISKRVALEQGAVGPTGRGSGIRDDARWSEGLGVY 240
Query: 241 SELDFDIPI-------GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASD 293
+L + GD +DR VR+ E+ +S+++I ++ + GP+
Sbjct: 241 PDLGIKPVMPQDVTGERPRGDVFDRMAVRIGELWQSLELIEHALDAMPD----GPIKTFP 296
Query: 294 PKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLIS-DGGNKP 352
V + + GE EAP+GE Y+ G +KP
Sbjct: 297 KDNVLYAKLRLMV-------------------DGEGIGRYEAPRGELVHYVRGKKGSDKP 337
Query: 353 YRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
R K R P + +L A+ G Q+AD + S+D DR
Sbjct: 338 LRWKPREPTFPNLFAVARGVIGDQVADFVVAVASIDPCLSCTDR 381
>gi|331643104|ref|ZP_08344239.1| hydrogenase-4 component G [Escherichia coli H736]
gi|323961281|gb|EGB56893.1| respiratory-chain NADH dehydrogenase [Escherichia coli H489]
gi|323970991|gb|EGB66240.1| respiratory-chain NADH dehydrogenase [Escherichia coli TA007]
gi|331039902|gb|EGI12122.1| hydrogenase-4 component G [Escherichia coli H736]
Length = 570
Score = 309 bits (793), Expect = 4e-82, Method: Composition-based stats.
Identities = 102/398 (25%), Positives = 162/398 (40%), Gaps = 50/398 (12%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 189 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 248
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 249 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 308
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E GSR GGV +DI E
Sbjct: 309 CHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 368
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A DLR PY
Sbjct: 369 MRADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYAD 412
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 413 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 457
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 458 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 500
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 501 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 538
>gi|317122150|ref|YP_004102153.1| NADH dehydrogenase subunit D [Thermaerobacter marianensis DSM
12885]
gi|315592130|gb|ADU51426.1| NADH dehydrogenase subunit D [Thermaerobacter marianensis DSM
12885]
Length = 403
Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats.
Identities = 137/395 (34%), Positives = 215/395 (54%), Gaps = 31/395 (7%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ R ++ GPQHP+ HGVLR++L L+GE + +P IG +HR EK E +T+ V
Sbjct: 39 DDEGRHMVLSMGPQHPSTHGVLRVVLTLEGETIVHAEPDIGFMHRNWEKQAEYRTYAMNV 98
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P+ DR DY+AP + E A+E+L+G+ +P R + +R+ E+ R+ SH+L + T +D
Sbjct: 99 PFSDRNDYIAPFHNERLICEAIERLVGVAVPERARWLRLALCEMERVASHVLWMGTMGLD 158
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA+TP L+ + +RE + ++ SG R+ + R GG+ D P VE W D
Sbjct: 159 LGAVTPFLFAWRDREMYYMLVQQLSGGRLFPQFMRIGGLRNDTPDGWVEAALRWLDHMEH 218
Query: 183 ALN-DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+ LL N ++ +R +G + A W SG ++RG G A DLR + Y
Sbjct: 219 EAWPEYVQLLFENDVYVRRTRGVGVITPAQAVAWQASGPVLRGCGVARDLRATDRGVPYD 278
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
++ F + + GD Y R VR+ E+ +S+++ R+ + RL G GPV A P+ +
Sbjct: 279 QVGFRPVVAEGGDVYARNRVRIDEVLQSIRMAREALRRLPG----GPVMAKLPRALR--- 331
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
PVGEVY +E+P+G G+YL++ G PYR R+P
Sbjct: 332 -----------------------PVGEVYHEIESPRGVIGLYLVAGGDVMPYRAHWRSPC 368
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ HLQ + + +GH +AD++AI+GS+DIV EVDR
Sbjct: 369 FVHLQLLPIMARGHLVADMTAIIGSIDIVLCEVDR 403
>gi|256021827|ref|ZP_05435692.1| hydrogenase 4, subunit [Escherichia sp. 4_1_40B]
Length = 555
Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats.
Identities = 102/398 (25%), Positives = 162/398 (40%), Gaps = 50/398 (12%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E GSR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A DLR PY
Sbjct: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYAD 397
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 398 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 442
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 443 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 485
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 486 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523
>gi|119873122|ref|YP_931129.1| NADH dehydrogenase subunit D [Pyrobaculum islandicum DSM 4184]
gi|119674530|gb|ABL88786.1| NADH dehydrogenase (ubiquinone) [Pyrobaculum islandicum DSM 4184]
Length = 402
Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats.
Identities = 127/386 (32%), Positives = 197/386 (51%), Gaps = 8/386 (2%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
I +GPQHP++ G R I+E+DG+IV V P G +HR EKL ET+ ++Q +P F+RL
Sbjct: 25 IFWGPQHPSS-GHTRFIVEVDGDIVVNVTPDPGYVHRTMEKLGETRHWIQNIPLFERLSL 83
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+N AYA+A+EKL ++ R Q +RV+ E+ RI +HL ++ ++ +G+ T +
Sbjct: 84 PDAINVTWAYAIAIEKLTKYDVSPRAQYLRVIMGELSRISTHLYDLGIHSIMIGSSTGFM 143
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
W F RE L+ + +GSR + PGGV P E + + L++ L
Sbjct: 144 WCFGLRELLVQLWAMVTGSRTTPTWVLPGGVRTAPPDAFYEQTKGFLNYLEKKLDEFIRL 203
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
+ N + R ++G + EDA +G RGSG WD RK+ Y Y E ++++ +
Sbjct: 204 VIKNPVGYYRLKDVGYLSKEDAAKLMATGPGARGSGIEWDARKTYRYGLYDEFEWEVCVE 263
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
GD R LVR+ E+++S +IIRQ ++R + V S +PPK+ +
Sbjct: 264 DGGDSLARTLVRICEIKQSARIIRQAIDRTPRDGPL--VGESLLHRIPPKQREKANEYIR 321
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
L F +P GE E +G + ++ DG KPYR +I P + +L+ M
Sbjct: 322 LGALF-----TTMLPQGEGVGITEGGRGRYFFHVFGDGTEKPYRVRISTPSWQNLRPMIK 376
Query: 371 LCKGHQLADVSAILGSLDIVFGEVDR 396
G +L D+ AI GS E DR
Sbjct: 377 AFIGARLMDLPAIYGSFGYFPPEQDR 402
>gi|301329009|ref|ZP_07222036.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
78-1]
gi|300844643|gb|EFK72403.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
78-1]
Length = 555
Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats.
Identities = 102/398 (25%), Positives = 162/398 (40%), Gaps = 50/398 (12%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E GSR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A DLR PY
Sbjct: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYAD 397
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 398 YGNIPKTLFTFTDGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 442
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 443 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 485
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 486 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523
>gi|257791325|ref|YP_003181931.1| NADH dehydrogenase (quinone) [Eggerthella lenta DSM 2243]
gi|257475222|gb|ACV55542.1| NADH dehydrogenase (quinone) [Eggerthella lenta DSM 2243]
Length = 362
Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats.
Identities = 104/391 (26%), Positives = 167/391 (42%), Gaps = 30/391 (7%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
++ I FGPQHP L L L ++ E V P IG +HRG EKL+ET+ + Q +
Sbjct: 2 GKATVIPFGPQHPVLPEPLHLDLVVEDETVIEAVPQIGFIHRGLEKLVETRDYNQFIYVA 61
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
+R+ + YA VEKL+G+EIP R + +RV++ E+ RI SH+L + A G
Sbjct: 62 ERICGICAFGHSMGYAETVEKLMGVEIPERAEYLRVIWHELSRIHSHVLWMGLAADAFGF 121
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ + + RE+++ +E+ +G R+ + + GGV +DI ++ +
Sbjct: 122 ESLFMHCWRLRERVLDIFEKTTGGRVIFSVVKVGGVVRDIDDAQFAEMKRVLEGIKDEYR 181
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ + + K R V +G + EDA G R S +D R DF
Sbjct: 182 QLCNAFLKDSSVKNRTVGVGYISHEDALAQSMVGPFARASNVNYDARMLGNGGYGFLSDF 241
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ GDCY R VR +E+ +S+ II + + ++ + V S
Sbjct: 242 QPVLDGQGDCYARVKVRALEVLQSIDIIEEMIAKIPAGDIAVDVKGSPAAGA-------- 293
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
E VE P+GE Y +G R ++R P +L
Sbjct: 294 ----------------------EAANVVEQPRGECYYYARGNGSKFLDRMRMRTPTSQNL 331
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
M G LADV+ I+ ++D +R
Sbjct: 332 AGMATALAGCDLADVNMIVLTIDPCISCTER 362
>gi|118474557|ref|YP_891337.1| hydrogenase-4 component G [Campylobacter fetus subsp. fetus 82-40]
gi|118413783|gb|ABK82203.1| hydrogenase-4 component G [Campylobacter fetus subsp. fetus 82-40]
Length = 582
Score = 309 bits (791), Expect = 6e-82, Method: Composition-based stats.
Identities = 97/388 (25%), Positives = 163/388 (42%), Gaps = 33/388 (8%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETK-TFLQAVPYFDRLD 69
I GP H A L DG+ + D + HRG EKL E + + Q +R+
Sbjct: 191 IPLGPLHITADEPGHFRLYCDGDTIVDADYRLFYQHRGMEKLAENRLNYNQMSYLAERVC 250
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ A AVE+ +G+EIP R Q IR++ SEI R+ S+LLN+ G T
Sbjct: 251 GICGFAHSIACVEAVERGIGLEIPRRAQAIRIMSSEIERMHSNLLNLGLACEVTGNYTAF 310
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ F RE + + +G R GGV +DI ++ + + L++I
Sbjct: 311 MHIFRVREYTLELAQLITGGRKTYGTIVIGGVRRDITLNEIKQSYEILEKIGTQLDEIWQ 370
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
++ ++ R IG + + A + G +RGSG D R Y Y EL+ +
Sbjct: 371 VVMEDKRQIGRWKGIGILDKQVARDFSPVGPNVRGSGFKRDTRYDHTYGFYKELELTPNV 430
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD R LVR + ++++++++QC++ + G
Sbjct: 431 QFDGDVLSRELVRYNDCKQALRLVKQCLDIMPGGAI------------------------ 466
Query: 310 SLIHHFKLYTEGYHVPVGEVY-AAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
Y + G EAP+GE +++ K YR + RA Y + ++
Sbjct: 467 -------FTDTNYRLQPGTYCLGYDEAPRGENIHWIMQGDSQKVYRWRCRASTYNNWSSL 519
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +G+ +AD + I+ SLD + +R
Sbjct: 520 RYQLQGNTIADAALIVCSLDPCYSCTER 547
>gi|317490462|ref|ZP_07948944.1| hypothetical protein HMPREF1023_02644 [Eggerthella sp. 1_3_56FAA]
gi|325831547|ref|ZP_08164801.1| hypothetical protein HMPREF9404_5199 [Eggerthella sp. HGA1]
gi|316910455|gb|EFV32082.1| hypothetical protein HMPREF1023_02644 [Eggerthella sp. 1_3_56FAA]
gi|325486801|gb|EGC89249.1| hypothetical protein HMPREF9404_5199 [Eggerthella sp. HGA1]
Length = 362
Score = 309 bits (791), Expect = 6e-82, Method: Composition-based stats.
Identities = 104/391 (26%), Positives = 167/391 (42%), Gaps = 30/391 (7%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
++ I FGPQHP L L L ++ E V P IG +HRG EKL+ET+ + Q +
Sbjct: 2 GKATVIPFGPQHPVLPEPLHLDLVVEDETVIEAVPQIGFIHRGLEKLVETRDYNQFIYVA 61
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
+R+ + YA VEKL+G+EIP R + +RV++ E+ RI SH+L + A G
Sbjct: 62 ERICGICAFGHSMGYAETVEKLMGVEIPERAEYLRVIWHELSRIHSHVLWMGLAADAFGF 121
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ + + RE+++ +E+ +G R+ + + GGV +DI ++ +
Sbjct: 122 ESLFMHCWRLRERVLDIFEKTTGGRVIFSVVKVGGVVRDIDDAQFAEMKRVLEGIKDEYR 181
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ + + K R V +G + EDA G R S +D R DF
Sbjct: 182 QLCNAFLKDSSVKNRTVGVGYISHEDALAQSMVGPFARASNVNYDARMLGNGGYGFLSDF 241
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ GDCY R VR +E+ +S+ II + + ++ + V S
Sbjct: 242 QPILDGQGDCYARVKVRALEVLQSIDIIEEMIAKIPAGDIAVDVKGSPAAGA-------- 293
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
E VE P+GE Y +G R ++R P +L
Sbjct: 294 ----------------------EAANVVEQPRGECYYYARGNGSKFLDRMRMRTPTSQNL 331
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
M G LADV+ I+ ++D +R
Sbjct: 332 AGMATALAGCDLADVNMIVLTIDPCISCTER 362
>gi|148262878|ref|YP_001229584.1| NADH dehydrogenase (quinone) [Geobacter uraniireducens Rf4]
gi|146396378|gb|ABQ25011.1| ech hydrogenase subunit E [Geobacter uraniireducens Rf4]
Length = 359
Score = 309 bits (791), Expect = 6e-82, Method: Composition-based stats.
Identities = 106/387 (27%), Positives = 176/387 (45%), Gaps = 33/387 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GPQHP + L + E V P I +HRG E+L+E + F+ DR+
Sbjct: 6 IIPIGPQHPILPEPIHFDLVTEDEKVIDAIPSISYVHRGLERLVEKRDFIDFAHVADRIC 65
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ Y AVE+++ IE+P R +R +++E+ RI SH+ + A G +
Sbjct: 66 GLCSFMHSLGYCQAVEEIMSIEVPQRALYLRSIWAELSRIHSHIFWLGAAADAFGFESLF 125
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ RE ++ +E +G R+ + GGV +DI + ++ I + AL ++S+
Sbjct: 126 MQAMRLREPVLDIFEETTGGRVILGVCKVGGVRRDIDGDSLKGIVNRLTTLKGALEELSN 185
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + + R +G + EDA+ G G M R SG A D+R Y Y L+ + +
Sbjct: 186 VFLNDYSVQHRLAGVGFLSREDAYTLGCVGPMARASGLAIDMRALG-YAAYKYLEVEPVV 244
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GDC+ R VR+ E+ ++ +IRQ V ++ V+ +
Sbjct: 245 ESAGDCHARCRVRIREIFHAIDLIRQAVGKIPAGPVDVKVTGT----------------- 287
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
P GE Y+ VE P+GE Y+ +G R ++R P ++++ AM
Sbjct: 288 ---------------PDGEYYSRVEQPRGEVIHYVKGNGARFLQRFRVRVPTFSNIPAMV 332
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVDR 396
+ KG QLADV I+ +LD +R
Sbjct: 333 KVLKGSQLADVPNIILTLDPCISCTER 359
>gi|331669227|ref|ZP_08370075.1| hydrogenase-4 component G [Escherichia coli TA271]
gi|323170247|gb|EFZ55900.1| hydrogenase-4 component G [Escherichia coli LT-68]
gi|331064421|gb|EGI36332.1| hydrogenase-4 component G [Escherichia coli TA271]
Length = 555
Score = 309 bits (791), Expect = 6e-82, Method: Composition-based stats.
Identities = 102/398 (25%), Positives = 162/398 (40%), Gaps = 50/398 (12%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E GSR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A DLR PY
Sbjct: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYAD 397
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 398 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 442
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 443 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 485
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 486 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523
>gi|331678472|ref|ZP_08379147.1| hydrogenase-4 component G [Escherichia coli H591]
gi|331074932|gb|EGI46252.1| hydrogenase-4 component G [Escherichia coli H591]
Length = 570
Score = 309 bits (791), Expect = 6e-82, Method: Composition-based stats.
Identities = 102/398 (25%), Positives = 162/398 (40%), Gaps = 50/398 (12%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 189 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 248
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 249 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 308
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E GSR GGV +DI E
Sbjct: 309 CHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 368
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A DLR PY
Sbjct: 369 MRADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYAD 412
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 413 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 457
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 458 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 500
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 501 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 538
>gi|52548540|gb|AAU82389.1| F420H2-quinone oxidoreductase 45 kD subunit [uncultured archaeon
GZfos17C7]
Length = 788
Score = 309 bits (791), Expect = 6e-82, Method: Composition-based stats.
Identities = 116/396 (29%), Positives = 199/396 (50%), Gaps = 9/396 (2%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ +K+ F GP H + G LR ++ + G+I++ V P G +HR EK+ E + ++Q
Sbjct: 401 EAEKNDEFVAFIGPHHSGS-GHLRWVMRMKGDIIKDVIPDPGYVHRSMEKIAENRLYIQN 459
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
VP +R + P+N Y A+E LGIE+P R + IR + +E+ RI + ++ +
Sbjct: 460 VPLTERPNISDPINMNLGYVRAIENALGIEVPERAKYIRTIMAELSRIGAFFYDMGIFPL 519
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
+G T ++ F RE ++ R +GSR ++ PGG+ +DIP ++++ + +
Sbjct: 520 FMGHSTGFMYSFAIREMVLELMVRMTGSRCTPSFIVPGGIRRDIPDDVLDRTRKFTTAIH 579
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
L ++ N + R +G + E+A G G +R SG +D+RK++PYE Y
Sbjct: 580 KRLKKYENIFVYNPVLISRMKEVGVLTREEAIRCGIVGPFLRASGVEYDVRKAEPYEVYD 639
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+LD++ G GDC R R+ EM++SV+I+RQ V+ + + G +S
Sbjct: 640 KLDWEATTGDAGDCLGRIFGRLEEMKQSVEIVRQAVDAVQEMPRGGVIS-------EEIL 692
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG-GNKPYRCKIRAP 360
D K + + + + +P GE + EA +G +ISDG N PYR +I P
Sbjct: 693 GDYKEASDDIRGYLYNVYGDLVLPKGEWTSVTEAARGTVLYSIISDGESNVPYRVRIITP 752
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +L+ + KG ++AD + S E DR
Sbjct: 753 CWMNLRGIIEASKGERVADFWTVYASFGYFPPEADR 788
>gi|300903497|ref|ZP_07121422.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
84-1]
gi|300922193|ref|ZP_07138329.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
182-1]
gi|301302839|ref|ZP_07208967.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
124-1]
gi|300404529|gb|EFJ88067.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
84-1]
gi|300421432|gb|EFK04743.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
182-1]
gi|300841774|gb|EFK69534.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
124-1]
gi|315256503|gb|EFU36471.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
85-1]
Length = 555
Score = 309 bits (791), Expect = 6e-82, Method: Composition-based stats.
Identities = 102/398 (25%), Positives = 162/398 (40%), Gaps = 50/398 (12%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E GSR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A DLR PY
Sbjct: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYAD 397
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 398 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 442
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 443 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 485
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 486 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523
>gi|330508772|ref|YP_004385200.1| F420H2 dehydrogenase subunit D [Methanosaeta concilii GP-6]
gi|328929580|gb|AEB69382.1| F420H2 dehydrogenase, subunit D [Methanosaeta concilii GP-6]
Length = 570
Score = 308 bits (790), Expect = 7e-82, Method: Composition-based stats.
Identities = 132/395 (33%), Positives = 200/395 (50%), Gaps = 31/395 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K ++ GPQH G L + ++GE V++ +G +H+G EK++E +++LQ +
Sbjct: 205 KSDSEMIMHLGPQHAMVPGPFLLDILVEGERVKKAFLDLGYIHKGIEKIMENRSWLQGIT 264
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+ YVA ++ Y AVE+LLG+E+P+R Q IRV+ E+ RI SHL+ +
Sbjct: 265 YTDRMCYVAALSNNECYCGAVERLLGLEVPLRAQYIRVILEELSRIQSHLIGTGEFLTLI 324
Query: 124 G--ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
P + +REK++ E +G+R+ ++ R GGV D+P E
Sbjct: 325 AGVGFAPWQYMIMDREKIISLIESVTGARLTHSFVRFGGVRNDLPEGFDEQCRKVFPYMK 384
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
S + + +L + I+ R NIG++ E A G +G ++R +G +D+R P Y
Sbjct: 385 SRIEEFIELFAQDPIYHARMENIGSISPETAKRIGCAGRVLRAAGVPYDMRIEDPILVYP 444
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
ELDF + G GD DR + EM ES+ II QC++++ GP+
Sbjct: 445 ELDFKVVTGTRGDSADRIDCTLREMLESIHIIEQCLDKI----PSGPIKTEAKI------ 494
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+P GE Y VE P+GE G+Y+ISDGG+KPYR K+R P
Sbjct: 495 -------------------PKKIPAGEAYYRVEDPRGEMGMYVISDGGDKPYRVKVRGPF 535
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YA Q + L +G +AD AI GS+D E DR
Sbjct: 536 YATFQTLTPLLEGVYIADAVAIAGSMDGCPSESDR 570
>gi|14520929|ref|NP_126404.1| CO-induced hydrogenase related, subunit H [Pyrococcus abyssi GE5]
gi|5458146|emb|CAB49635.1| cooH-like CO-induced hydrogenase [Pyrococcus abyssi GE5]
Length = 426
Score = 308 bits (790), Expect = 7e-82, Method: Composition-based stats.
Identities = 108/394 (27%), Positives = 174/394 (44%), Gaps = 31/394 (7%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
+ FGP HP + IL LDGE + VD +G RG + + + ++Q + +R+
Sbjct: 10 VPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICG 69
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ + H Y AVE++ GIE+P R + IRV+ E+ RI SHLLN+ D+G T
Sbjct: 70 ICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLH 129
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
+ REK+M E +G+R++ + GGV +DI + + + + I D+
Sbjct: 130 LTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDV 189
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI- 249
+ + R N + + A G G RGSG D R S+ Y +L +
Sbjct: 190 FLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPIMP 249
Query: 250 ------GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
GD YDR VR+ E+ +S+++I ++++ G + V +
Sbjct: 250 EDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQI----PKGKIKTFPKDNVLVAKLK 305
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLIS-DGGNKPYRCKIRAPGY 362
+ GE EAP+GE Y+ G + P R K+R P +
Sbjct: 306 LLG-------------------DGEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTF 346
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L A+ +G+QLADV + S+D DR
Sbjct: 347 PNLFAIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
>gi|52549748|gb|AAU83597.1| F420H2-quinone oxidoreductase 45 kD subunit [uncultured archaeon
GZfos32E4]
Length = 788
Score = 308 bits (790), Expect = 9e-82, Method: Composition-based stats.
Identities = 116/396 (29%), Positives = 199/396 (50%), Gaps = 9/396 (2%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ +K+ F GP H + G LR ++ + G+I++ V P G +HR EK+ E + ++Q
Sbjct: 401 EAEKNDEFVAFIGPHHSGS-GHLRWVMRMKGDIIKDVIPDPGYVHRSMEKIAENRLYIQN 459
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
VP +R + P+N Y A+E LGIE+P R + IR + +E+ RI + ++ +
Sbjct: 460 VPLTERPNISDPINMNLGYVRAIENALGIEVPERAKYIRTIMAELSRIGAFFYDMGIFPL 519
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
+G T ++ F RE ++ R +GSR ++ PGG+ +DIP ++++ + +
Sbjct: 520 FMGHSTGFMYSFAIREMVLELMVRMTGSRCTPSFIIPGGIRRDIPDDVLDRTRKFTTAIH 579
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
L ++ N + R +G + E+A G G +R SG +D+RK++PYE Y
Sbjct: 580 KRLKKYENIFVYNPVLISRMKEVGVLTREEAIRCGIVGPFLRASGVEYDVRKAEPYEVYD 639
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+LD++ G GDC R R+ EM++SV+I+RQ V+ + + G +S
Sbjct: 640 KLDWEATTGDAGDCLGRIFGRLEEMKQSVEIVRQAVDAVQEMPRGGVIS-------EEIL 692
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG-GNKPYRCKIRAP 360
D K + + + + +P GE + EA +G +ISDG N PYR +I P
Sbjct: 693 GDYKEASDDIRGYLYNVYGDLVLPKGEWTSVTEAARGTVLYSIISDGESNVPYRVRIITP 752
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +L+ + KG ++AD + S E DR
Sbjct: 753 CWMNLRGIIEASKGERVADFWTVYASFGYFPPEADR 788
>gi|157161947|ref|YP_001459265.1| hydrogenase-4, G subunit [Escherichia coli HS]
gi|157067627|gb|ABV06882.1| hydrogenase-4, G subunit [Escherichia coli HS]
Length = 555
Score = 308 bits (789), Expect = 9e-82, Method: Composition-based stats.
Identities = 102/398 (25%), Positives = 162/398 (40%), Gaps = 50/398 (12%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E GSR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A DLR PY
Sbjct: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYAD 397
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 398 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNM------------------- 438
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 439 -------------QDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 485
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 486 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523
>gi|126464933|ref|YP_001040042.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Staphylothermus
marinus F1]
gi|126013756|gb|ABN69134.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Staphylothermus
marinus F1]
Length = 406
Score = 308 bits (789), Expect = 9e-82, Method: Composition-based stats.
Identities = 114/388 (29%), Positives = 177/388 (45%), Gaps = 27/388 (6%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
I GPQHPA H + L DGE + V+ + G HRG EKL E TF + + R+
Sbjct: 13 LEIPVGPQHPALHEPVLLKAYADGEEIVNVEINTGYNHRGIEKLGEKNTFYRDIFIVARV 72
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+ + + Y A+E++L + R + +RVL E R+ SH+L A +G +
Sbjct: 73 CGICNLVHANCYVRALEEILDMHPNERAKYLRVLAMEFERVHSHMLINAVMAEIIGFDSL 132
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
+ +RE +M E +G+R+ + Y GGV +DI + + D L+
Sbjct: 133 FMNIMLDRENIMKAKEIITGNRVLSDYMMIGGVRRDIDSVKKDKLLKIIDKVLPRLHYYK 192
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
L + +R V++G +K D + F G R SG D+R S+ YE Y ++ F++
Sbjct: 193 KLFMEDDTILKRLVDVGVIKRSDVTRYTFVGPPARASGVKIDVRVSEKYEVYGDIPFNMV 252
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
GD + R +VR E ES+ + + + L P P+ PP
Sbjct: 253 TRNEGDSWARMIVRWDEAIESLNMAKYILEHLPNDGNPVPDERRLPRRFPP--------- 303
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
GE + VEAP+GE Y++SDG KPYR KI+ P + ++
Sbjct: 304 ------------------GEAFTRVEAPRGELTYYVMSDGKPKPYRLKIKTPSFTNIINS 345
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L GH +AD+ IL SLD ++R
Sbjct: 346 GYLYVGHTIADLPVILVSLDPCISCMER 373
>gi|212224744|ref|YP_002307980.1| membrane bound hydrogenase, NiFe-hydrogenase large subunit 2
[Thermococcus onnurineus NA1]
gi|212009701|gb|ACJ17083.1| membrane bound hydrogenase, NiFe-hydrogenase large subunit 2
[Thermococcus onnurineus NA1]
Length = 426
Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats.
Identities = 103/394 (26%), Positives = 168/394 (42%), Gaps = 31/394 (7%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
I FGP HP + IL LDGE + VD +G RG + + + ++Q + +R+
Sbjct: 11 IPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGLQWIAYRRNYVQIMYLAERICG 70
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ + H Y AVE+ GIE+P R + IR + E+ R+ SHLLN+ D+G T
Sbjct: 71 ICSFSHNHTYTRAVEEAAGIEVPERAEYIRAIIGELERVHSHLLNLGVLGHDIGYDTVLH 130
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
+ RE++M E SG+R++ + GGV +DI + I + S + I ++
Sbjct: 131 LTWLARERVMDVLEAISGNRVNYSMVTIGGVRRDIDEKGKRLILDMIKYYRSIMPQIEEV 190
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI- 249
+ + R + + A G G R SG D R S+ Y +L +
Sbjct: 191 FLHDPTIEARLRDCAVISKRVALEQGAVGPTARASGLKVDARWSERLGVYPDLGVKPVMP 250
Query: 250 ------GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
HGD +DR VR+ E+ +S+ ++ ++++ G + + +
Sbjct: 251 QDVTGEKPHGDVFDRAAVRIGEIYQSLDMLEHALDQM----PEGKIKTFPKDNILVAKLK 306
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLIS-DGGNKPYRCKIRAPGY 362
+ GE EAP+GE Y+ G +KP R K R P +
Sbjct: 307 IMV-------------------DGEGIGRYEAPRGELVHYVRGKKGSDKPLRWKPREPTF 347
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L A+ G Q+AD + S+D DR
Sbjct: 348 PNLFAVAKGVTGDQVADFVLAVASIDPCLSCTDR 381
>gi|182415926|ref|YP_001820992.1| NADH dehydrogenase (quinone) [Opitutus terrae PB90-1]
gi|177843140|gb|ACB77392.1| NADH dehydrogenase (quinone) [Opitutus terrae PB90-1]
Length = 358
Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats.
Identities = 106/389 (27%), Positives = 173/389 (44%), Gaps = 33/389 (8%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
I FGPQHP + L L ++ E V P IG +HRG E+L+E K F++ V +R
Sbjct: 3 RTIIPFGPQHPVLPEPVHLDLVVEDERVVEARPSIGFIHRGLERLVEKKDFVEFVYVAER 62
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ + Y +E+++ I +P R + +R ++ E R+ SHLL + A +G
Sbjct: 63 ICGICSFIHGQTYCQGIEEIMRIAVPPRARYLRTIWGEFSRLHSHLLWLGLMADAIGFEN 122
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
+ + RE+++ E +G R+ + GGV +DIP + + I + + + +
Sbjct: 123 LFMHSWRVREQVLKIIEATTGGRVIFGVCKIGGVRRDIPADAIPGILDELTAIEAGMRRL 182
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+D +R + R +G + +DA G G +R SG A D+R Y + EL +
Sbjct: 183 ADTFLRDRSVQDRLRGVGVLSRDDAHALGCVGPTLRASGVAQDMR-HLGYAAFGELPVEP 241
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
GD Y R VR E+ +SV +IR+ L V+ +
Sbjct: 242 VTRLDGDSYARCAVRCEELFQSVDLIRRAFAALPAGEIAVKVTGN--------------- 286
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
P GE A E P+GE +L +DG R ++R P +A+L A
Sbjct: 287 -----------------PSGEFIARTEQPRGEVVYHLKADGSRNLQRFRVRTPTFANLPA 329
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
M L G +LADV ++ ++D +R
Sbjct: 330 MVKLLPGCELADVPVLVLTIDPCISCTER 358
>gi|210631899|ref|ZP_03297111.1| hypothetical protein COLSTE_01001 [Collinsella stercoris DSM 13279]
gi|210159824|gb|EEA90795.1| hypothetical protein COLSTE_01001 [Collinsella stercoris DSM 13279]
Length = 364
Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats.
Identities = 102/387 (26%), Positives = 165/387 (42%), Gaps = 28/387 (7%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I FGPQHP + L L ++ E V P IG +HRG EKL+E + + Q V +R+
Sbjct: 6 VIPFGPQHPVLPEPVHLDLVVEDEHVIEAIPQIGFVHRGLEKLVEKRDYNQFVYIAERVC 65
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + YA A EKLLGIE+P R + +R + E+ R+ SHLL + A G +
Sbjct: 66 GICSFGHGYGYASATEKLLGIEVPRRAEYLRAILEELSRVHSHLLWLGLLADAFGFESLF 125
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ RE ++ ++ G R+ + GG+ DI ++ + D +I D
Sbjct: 126 NHCWRLRETVLDIFQETCGGRIILSICIVGGMAHDIDDAMLCGVCDKLDGIQRDYREIVD 185
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + + R +G + EDA G +GSG D+R + F+ I
Sbjct: 186 TMLNDSSVRSRLEGVGAISFEDALELSMVGPFAKGSGVEHDMRTTGFGAYGDLEHFEPII 245
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GDCY R VR E+ +S+ II++ V ++ G
Sbjct: 246 ATEGDCYARCKVRCQEVFQSIAIIKELVAKIPHDGIGG---------------------- 283
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
K + G+ + +E P+GE Y+ +G R ++R P +L M
Sbjct: 284 ------KPAAKVLPPENGQAHVLIEQPRGEAFYYVRGNGTKYLDRFRLRTPTSQNLAGMV 337
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVDR 396
+G +ADV I+ ++D +R
Sbjct: 338 RAMQGVDVADVPMIILTIDPCISCTER 364
>gi|188492803|ref|ZP_03000073.1| hydrogenase-4, G subunit [Escherichia coli 53638]
gi|188488002|gb|EDU63105.1| hydrogenase-4, G subunit [Escherichia coli 53638]
Length = 533
Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats.
Identities = 102/398 (25%), Positives = 163/398 (40%), Gaps = 50/398 (12%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGNSDARVIPVGPLHITSDEPGHFPLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E +GSR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A DLR PY
Sbjct: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYAD 397
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 398 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 442
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 443 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 485
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 486 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523
>gi|218681071|ref|ZP_03528968.1| NADH dehydrogenase subunit D [Rhizobium etli CIAT 894]
Length = 276
Score = 307 bits (786), Expect = 3e-81, Method: Composition-based stats.
Identities = 226/276 (81%), Positives = 254/276 (92%)
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAY RPGGVHQD+P +LV+DIG WCD F
Sbjct: 1 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYVRPGGVHQDLPEQLVQDIGDWCDPF 60
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
AL+DI +LLTGNRIFKQRNV+IG V LED W WGFSGVM+RGSGAAWDLR++QPYECY
Sbjct: 61 LKALDDIDNLLTGNRIFKQRNVDIGVVSLEDCWAWGFSGVMVRGSGAAWDLRRAQPYECY 120
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
S+L+FDIPIGK+GD YDRYL+RM+EMR+SV+I++QCVNRLL K GP S+ D K+VPPK
Sbjct: 121 SDLEFDIPIGKNGDNYDRYLIRMIEMRQSVRIMKQCVNRLLSDAKTGPYSSIDGKVVPPK 180
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MKRSME+LIHHFKLYTEGYHVP GEVYAAVEAPKGEFGVYL+SDG NKPYRCKIRAP
Sbjct: 181 RGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYLVSDGTNKPYRCKIRAP 240
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GYAHLQAM+F+C+GHQLADV+A+LGSLDIVFGEVDR
Sbjct: 241 GYAHLQAMDFMCRGHQLADVAAVLGSLDIVFGEVDR 276
>gi|257077081|ref|ZP_05571442.1| NADH dehydrogenase subunit D [Ferroplasma acidarmanus fer1]
Length = 369
Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats.
Identities = 137/388 (35%), Positives = 209/388 (53%), Gaps = 25/388 (6%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
+N GP HP+ HG+ R ++L+ E VE VD IG LHR EK+ E + YFDR+
Sbjct: 7 IELNVGPVHPSTHGIYRFRVKLNEETVEDVDITIGYLHRNAEKICELSYYANNTIYFDRM 66
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
DY+ MN E AY A E L+G+E+P R Q IR++ +E+ RI + ++ + +D+G LTP
Sbjct: 67 DYIDAMNMELAYLRAAETLMGMEVPERAQWIRMIMAELSRIAARMVGIGALGLDLGMLTP 126
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
F EREK+ + ASG R Y GGV+QD ++E+I + F L +I
Sbjct: 127 FFHTFHEREKIQNIFVEASGGRQEVNYMSIGGVYQDFNDTIIEEIKEFISGFKGKLEEIV 186
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
+ + +F QRN G ++ E A +G +G M+R SG A+D+RK PY Y +++FD+P
Sbjct: 187 KMYLDSEVFWQRNQGTGILEPEVALDYGVTGPMLRASGIAYDVRKDSPYLFYDKVNFDVP 246
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
+ D R+L++ E+R+S+KII QC+ +L P + ++
Sbjct: 247 VTNTKDNLGRFLLKAEELRQSIKIIEQCLAKLPDGPFFNPKAKKSAMLLLKG-------- 298
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
G+V+ VE+ GE+GV++ DGG KPYR R+P + +L +
Sbjct: 299 -----------------QGDVFTRVESESGEYGVFIRGDGGLKPYRIHARSPSFKNLAVV 341
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +G +AD+ A + S D V GEVDR
Sbjct: 342 PVMARGGLIADLIATIASTDAVAGEVDR 369
>gi|18977806|ref|NP_579163.1| mbh12 membrane bound hydrogenase alpha (NADH dehydrogenase)
[Pyrococcus furiosus DSM 3638]
gi|18893555|gb|AAL81558.1| mbh12 membrane bound hydrogenase alpha (NADH dehydrogenase)
[Pyrococcus furiosus DSM 3638]
Length = 427
Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats.
Identities = 105/394 (26%), Positives = 170/394 (43%), Gaps = 31/394 (7%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
I FGP HP + I+ LDGE + VD +G RG + + + ++Q + +R+
Sbjct: 10 IPFGPIHPGLEEPEKFIITLDGERIVNVDVKLGYNLRGVQWIGMRRNYVQIMYLAERMCG 69
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ + H Y AVE++ GIE+P R + IRV+ E+ RI SHLLN+ D+G T
Sbjct: 70 ICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIVGELERIHSHLLNLGVVGHDIGYDTVLH 129
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
+ RE++M E SG+R++ + GGV +DI + I + L I D+
Sbjct: 130 LTWLARERVMDVLEAVSGNRVNYSMVTIGGVRRDIGEKQKRLILDMIKYYREVLPQIEDV 189
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI- 249
+ + R ++ V + A G G RGSG D R S+ Y +L
Sbjct: 190 FLHDSTIEARLRDVAVVPKKLAIEMGAVGPTARGSGIKEDSRWSEQLGVYPDLGIKPVTP 249
Query: 250 ------GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
GD YDR VR+ E+ S+ ++ ++++ G + + +
Sbjct: 250 EDVTGEKARGDVYDRMAVRIGELWMSLDLLEHALDQM----PEGKIKTFPKDNILVAKLK 305
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLIS-DGGNKPYRCKIRAPGY 362
+ GE EAP+GE Y+ G + P R K R P +
Sbjct: 306 LLG-------------------DGEGIGRYEAPRGELVHYVRGQKGRDGPVRWKPREPTF 346
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L + +G++LAD+ + S+D DR
Sbjct: 347 PNLFTIAKALEGNELADLVVAIASIDPCLSCTDR 380
>gi|332157669|ref|YP_004422948.1| CO-induced hydrogenase related, subunit H [Pyrococcus sp. NA2]
gi|331033132|gb|AEC50944.1| CO-induced hydrogenase related, subunit H [Pyrococcus sp. NA2]
Length = 426
Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats.
Identities = 109/394 (27%), Positives = 174/394 (44%), Gaps = 31/394 (7%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
I FGP HP + IL LDGE + VD +G RG + + + ++Q + +R+
Sbjct: 10 IPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICG 69
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ + H Y AVE++ GIE+P R + IRV+ E+ RI SHLLN+ D+G T
Sbjct: 70 ICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVIGHDIGYDTVLH 129
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
+ RE++M E SG+R++ + GGV +DI + I + + I D+
Sbjct: 130 LTWLARERVMDVLEAISGNRVNYSMMTIGGVRRDIEEKHKRLILDMIKYYREIMPQIEDV 189
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI- 249
+ + R + T+ + A G G RGSG D R S+ Y +L +
Sbjct: 190 FLHDSTIEARLRDCATIPRKLAIEMGAVGPTGRGSGVKDDARWSEKLGVYPDLGIKPVMP 249
Query: 250 ------GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
GD YDR VR+ E+ +S+ ++ ++++ G + V +
Sbjct: 250 EDVTGEKARGDVYDRVAVRIGEIWQSLDLLEHALDQM----PEGKIKTFPKDNVLVAKLK 305
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLIS-DGGNKPYRCKIRAPGY 362
+ GE EAP+GE Y+ G + P R K+R P +
Sbjct: 306 LLG-------------------DGEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTF 346
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L A+ +G+QLADV + S+D DR
Sbjct: 347 PNLFAIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
>gi|307595390|ref|YP_003901707.1| NADH dehydrogenase (quinone) [Vulcanisaeta distributa DSM 14429]
gi|307550591|gb|ADN50656.1| NADH dehydrogenase (quinone) [Vulcanisaeta distributa DSM 14429]
Length = 425
Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats.
Identities = 131/398 (32%), Positives = 204/398 (51%), Gaps = 11/398 (2%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ +S + + GPQHP + G +R+IL L G+ + P G +HRG EKL ET+ ++
Sbjct: 36 EAYRSDEYLVFIGPQHPGS-GHMRIILRLKGDYIVDAIPDPGYVHRGVEKLAETRLYIHI 94
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+P +R N + Y+ VEKL +++P R Q IRV+ +E+ RI +HL + A+
Sbjct: 95 LPLIERPTIQDSANFDLGYSRVVEKLADLDVPKRAQYIRVILAELSRIATHLYDTGILAV 154
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
+G T +W F R+ + + R +G+R +Y PGGV D+ PE++ + +
Sbjct: 155 FIGHSTGYMWAFGLRDVINEAFIRITGTRTTLSYTVPGGVRWDVKPEVLNFVYELTNYLE 214
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+ D+ + N + R +G + E+A +G G +R SG +D+RK +PYE Y+
Sbjct: 215 RKMRDMESIFVKNPVTIHRLKEVGVLTKEEAIKYGLVGPFLRASGVEYDVRKVEPYEVYN 274
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGP--VSASDPKIVPP 299
E ++DIP+ GD Y R+LVR+ E+R+S+KIIRQ V + + +S PK P
Sbjct: 275 EFEWDIPVADDGDSYSRFLVRVEEIRQSIKIIRQAVKNIPDTPIISEKLLSRIPPKDRPQ 334
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG-GNKPYRCKIR 358
D++ + G GE EA +G LISDG N PYR ++
Sbjct: 335 AAKDIRTFL-------TKTHVGLTPGAGEATTLTEASRGLLLFTLISDGHSNVPYRLRMV 387
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
P + L+ KG++LADV AI GS E DR
Sbjct: 388 TPSWLLLRGFMEALKGYRLADVPAIYGSFGYFPPEADR 425
>gi|260845119|ref|YP_003222897.1| hydrogenase 4, subunit HyfG [Escherichia coli O103:H2 str. 12009]
gi|257760266|dbj|BAI31763.1| hydrogenase 4, subunit HyfG [Escherichia coli O103:H2 str. 12009]
Length = 555
Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats.
Identities = 102/398 (25%), Positives = 163/398 (40%), Gaps = 50/398 (12%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + + L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGNSDAQVIPVGPLHITSDELGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E GSR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A DLR PY
Sbjct: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYAD 397
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 398 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 442
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 443 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 485
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 486 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523
>gi|83591656|ref|YP_425408.1| NADH-ubiquinone oxidoreductase [Rhodospirillum rubrum ATCC 11170]
gi|83574570|gb|ABC21121.1| NADH-ubiquinone oxidoreductase [Rhodospirillum rubrum ATCC 11170]
Length = 561
Score = 306 bits (783), Expect = 5e-81, Method: Composition-based stats.
Identities = 109/393 (27%), Positives = 165/393 (41%), Gaps = 32/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIET-KTFLQAVP 63
+S++ I+ GP P L +GE + D HRG EKL +T + Q
Sbjct: 171 ESKATIISVGPFFPTLDEPAYFRLFCEGEEIIGSDYRGFFSHRGIEKLSDTVLDYNQVPF 230
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+R+ + Y +AVE GIEIP R + IR + E+ R+ SHLL + +
Sbjct: 231 MAERVCGICGFVHSACYCMAVEDAAGIEIPPRAKYIRSIMMELERLHSHLLWLGLAGHYL 290
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G T + + RE +M E +G+R GGV +D+ + + I
Sbjct: 291 GFDTVLMQSWRIREPIMWLVEEITGNRKTYGMNLVGGVRRDLDSAICDKIMAAVTKIGIE 350
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
++ + G+ K R V +G + EDA G G R SG D R PY + +L
Sbjct: 351 CEELISAVAGDESLKMRMVKVGVLSHEDARGICVVGPTARASGVHIDARADYPYAAFPDL 410
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DF + GD + R LVR+ E+R SV +I+Q + +L +
Sbjct: 411 DFKPSFHEGGDIWARTLVRVDEVRSSVDLIKQMITKLPEGEIMAGFGPIPAWR------- 463
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E Y EAP+GE Y+ + N+PYR ++RA Y
Sbjct: 464 ------------------------EGYGIAEAPRGECVHYVQTGKDNRPYRWRVRAATYP 499
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
LQA+ + KG + D I+GS+D F +R
Sbjct: 500 QLQAVPLMLKGMSIGDFPIIIGSIDPCFSCTER 532
>gi|323944707|gb|EGB40774.1| respiratory-chain NADH dehydrogenase [Escherichia coli H120]
Length = 555
Score = 306 bits (783), Expect = 5e-81, Method: Composition-based stats.
Identities = 102/398 (25%), Positives = 163/398 (40%), Gaps = 50/398 (12%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + + L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGNSDAQVIPVGPLHITSDELGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E GSR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A DLR PY
Sbjct: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYAD 397
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 398 YGNIPKTLFTFTGGDVFSRMMVRVKETFDSLAMLEFALDNMPDTP--------------- 442
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 443 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 485
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 486 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523
>gi|325969612|ref|YP_004245804.1| NADH-quinone oxidoreductase subunit D [Vulcanisaeta moutnovskia
768-28]
gi|323708815|gb|ADY02302.1| NADH-quinone oxidoreductase subunit D [Vulcanisaeta moutnovskia
768-28]
Length = 425
Score = 306 bits (783), Expect = 6e-81, Method: Composition-based stats.
Identities = 134/398 (33%), Positives = 206/398 (51%), Gaps = 11/398 (2%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ +S + + GPQHP + G +R+IL L G+ V P G +HRG EKL ET+ ++
Sbjct: 36 EAYRSDEYLVFIGPQHPGS-GHMRIILRLKGDYVIDAIPDPGYVHRGVEKLAETRLYIHV 94
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+P +R N + Y+ AVEKL +++P R Q IRV+ +E+ RI +HL + A+
Sbjct: 95 IPLIERPTIQDSANFDLGYSRAVEKLADLDVPKRAQYIRVILAELSRIATHLYDTGILAV 154
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
+G T +W F R+ + + R +G+R +Y PGGV D+ PE++ + +
Sbjct: 155 FIGHSTGYMWAFGLRDVINEAFIRITGARTTLSYTVPGGVRWDVKPEVLNFVYELTNYLE 214
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+ND+ + N + R +G + E+A +G G +R SG +D+RK +PYE Y+
Sbjct: 215 RKMNDMGSIFVKNPVTIHRLKEVGVLTKEEAIKYGLVGPFLRASGVEYDVRKVEPYEVYN 274
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGP--VSASDPKIVPP 299
E ++DIP+ GD Y R+LVR+ E+R+S+KIIRQ V + + +S PK P
Sbjct: 275 EFEWDIPVADEGDSYSRFLVRVEEIRQSIKIIRQAVKNIPDTPIISEKLLSRIPPKDRPQ 334
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG-GNKPYRCKIR 358
D++ + G GE EA +G LISDG N PYR ++
Sbjct: 335 AAKDIRTFL-------TKTHVGLTPSAGEATTLTEASRGLLLFTLISDGHSNVPYRLRMV 387
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
P + L+ KG++LADV AI GS E DR
Sbjct: 388 TPSWLLLRGFMESLKGYRLADVPAIYGSFGYFPPEADR 425
>gi|193064709|ref|ZP_03045787.1| hydrogenase-4, G subunit [Escherichia coli E22]
gi|260869177|ref|YP_003235579.1| hydrogenase 4, subunit HyfG [Escherichia coli O111:H- str. 11128]
gi|192927592|gb|EDV82208.1| hydrogenase-4, G subunit [Escherichia coli E22]
gi|257765533|dbj|BAI37028.1| hydrogenase 4, subunit HyfG [Escherichia coli O111:H- str. 11128]
gi|323159339|gb|EFZ45324.1| hydrogenase-4 component G [Escherichia coli E128010]
gi|323177393|gb|EFZ62981.1| hydrogenase-4 component G [Escherichia coli 1180]
Length = 555
Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats.
Identities = 102/398 (25%), Positives = 163/398 (40%), Gaps = 50/398 (12%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + + L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGNSDAQVIPVGPLHITSDELGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E GSR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A DLR PY
Sbjct: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYAD 397
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 398 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 442
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 443 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 485
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 486 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523
>gi|194427378|ref|ZP_03059928.1| hydrogenase-4, G subunit [Escherichia coli B171]
gi|194414699|gb|EDX30971.1| hydrogenase-4, G subunit [Escherichia coli B171]
Length = 555
Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats.
Identities = 102/398 (25%), Positives = 163/398 (40%), Gaps = 50/398 (12%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + + L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGNSDAQVIPVGPLHITSDELGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E GSR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A DLR PY
Sbjct: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYAD 397
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 398 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 442
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 443 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 485
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 486 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523
>gi|90407579|ref|ZP_01215760.1| hydrogenase-4 component G [Psychromonas sp. CNPT3]
gi|90311282|gb|EAS39386.1| hydrogenase-4 component G [Psychromonas sp. CNPT3]
Length = 577
Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats.
Identities = 109/391 (27%), Positives = 170/391 (43%), Gaps = 36/391 (9%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVPYFDRL 68
I GP H + L +DGE + D + +HRG EKL ET+ + + DR+
Sbjct: 187 IIPLGPLHITSDEPGHFRLFVDGEDIIDADYRMFYVHRGMEKLAETRMGYNEVAFLTDRV 246
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+ Y +VE LGIE+P R ++IR + E+ R+ S++LNV + VG T
Sbjct: 247 CGICGFTHSVGYTNSVENALGIEVPPRAKMIRTVLLEVERLHSNMLNVGLSSHFVGFDTG 306
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
+ F REK M+ E +G+R GGV +DI E D+
Sbjct: 307 FMQFFRVREKTMLLAELLTGARKTYGLNLIGGVRRDIQKEHRLKGIKLIREIRKEFTDLV 366
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQ--PYECYSELDFD 246
++L QR IG ++ E A + G M+RGSG A D+R++ E Y+++ +
Sbjct: 367 EMLLSTPNIDQRLKGIGRLEPEIARNFSVVGPMVRGSGFARDVRRTHGDSVEAYADMPME 426
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
I D R LVR+ E+ +S + + LG GP
Sbjct: 427 IQTLNTCDVEARLLVRIKELLDSFNM----IEYGLGNLPEGP------------------ 464
Query: 307 SMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
L TEG+ P EAP+GE + ++ K +R + RA YA+
Sbjct: 465 ----------LLTEGFTYKPFQFALGFTEAPRGENVHWSMTGDNQKLFRWRCRAATYANW 514
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ ++ +G+ ++D I+GSLD + DR
Sbjct: 515 PTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 545
>gi|149194130|ref|ZP_01871228.1| HYDROGENASE 4 SUBUNIT [Caminibacter mediatlanticus TB-2]
gi|149136083|gb|EDM24561.1| HYDROGENASE 4 SUBUNIT [Caminibacter mediatlanticus TB-2]
Length = 579
Score = 305 bits (782), Expect = 7e-81, Method: Composition-based stats.
Identities = 97/387 (25%), Positives = 160/387 (41%), Gaps = 30/387 (7%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVPYFDRLD 69
+ +GP H + L +DGE + D + HRG EKL E + + Q +R+
Sbjct: 189 VPWGPLHITSDEPGHFRLFVDGETIIDADYRLYYQHRGMEKLAENRMNYDQMGFLAERVC 248
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ N A AVE+ I +P R Q IRV+ E+ R+ SHLLN+ G +T
Sbjct: 249 GICGFNHAIACIEAVERASNIPVPRRAQFIRVICLELERLHSHLLNMGLACEVTGNVTAF 308
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ F RE M + +G R GGV +DI +++ + L + +
Sbjct: 309 MHLFRIREYTMELAQLITGGRKTYGNVMVGGVRRDITATEIKEAKVLLNKVEKYLKEAWE 368
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + +R +G + + A + G +RGSG D R P++ + E+ F++ +
Sbjct: 369 AIMEDDDQVERWRGVGRLDPKVARDFSPVGPNMRGSGFKRDTRYDHPFDVFDEIKFEVAV 428
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
D R VR E+ E++ IIRQC + G
Sbjct: 429 DYGCDVLSREKVRYKEVMEAISIIRQCFELMSGGPI------------------------ 464
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
F E P EAP+GE +++ K YR + RA Y + ++
Sbjct: 465 -----FIKPDEYLIKPGNFALGNTEAPRGENIHWVMQGSAQKVYRWRCRAATYNNWPSLR 519
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVDR 396
F +G+ ++D + I+ SLD + +R
Sbjct: 520 FQFRGNDISDAALIVCSLDPCYSCTER 546
>gi|260856582|ref|YP_003230473.1| hydrogenase 4, subunit HyfG [Escherichia coli O26:H11 str. 11368]
gi|257755231|dbj|BAI26733.1| hydrogenase 4, subunit HyfG [Escherichia coli O26:H11 str. 11368]
Length = 555
Score = 304 bits (780), Expect = 1e-80, Method: Composition-based stats.
Identities = 102/398 (25%), Positives = 163/398 (40%), Gaps = 50/398 (12%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + + L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGNSDAQVIPVGPLHITSDELGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E GSR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A DLR PY
Sbjct: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYAD 397
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 398 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 442
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 443 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 485
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 486 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523
>gi|58700075|ref|ZP_00374615.1| NADH dehydrogenase I, D subunit [Wolbachia endosymbiont of
Drosophila ananassae]
gi|58533408|gb|EAL57867.1| NADH dehydrogenase I, D subunit [Wolbachia endosymbiont of
Drosophila ananassae]
Length = 272
Score = 304 bits (780), Expect = 1e-80, Method: Composition-based stats.
Identities = 176/276 (63%), Positives = 225/276 (81%), Gaps = 4/276 (1%)
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+DVGA+TP LW FEEREK++ FYERASG+R HAAY RPGG+ D+P +L+EDI + + F
Sbjct: 1 LDVGAMTPLLWLFEEREKILEFYERASGARFHAAYIRPGGIAADVPEDLIEDIAKFIEQF 60
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P ++D+ +LLT NRI+KQR V I + ++ A WGFSG M+R +G AWDLRKSQPYE Y
Sbjct: 61 PKYIDDVDELLTENRIWKQRTVGISEISIKQALDWGFSGPMLRAAGLAWDLRKSQPYEIY 120
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+LDFDIPIG++GDCYDRYLVRM E+R+S+ +++QC+ ++ G + D KI PP
Sbjct: 121 DQLDFDIPIGQNGDCYDRYLVRMAEIRQSISLVKQCIEKM----PEGQIKTEDRKISPPS 176
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
RA+MK+SME+LIHHFKLY+EGYHVP GE YA VEAPKGEFGVY++SDG N+PYRC+IRAP
Sbjct: 177 RAEMKKSMEALIHHFKLYSEGYHVPEGEAYAVVEAPKGEFGVYIVSDGTNRPYRCRIRAP 236
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+AHLQA++F+ KGH LADV+AI+GSLDIVFGE+DR
Sbjct: 237 GFAHLQALDFMAKGHMLADVAAIIGSLDIVFGEIDR 272
>gi|268680485|ref|YP_003304916.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Sulfurospirillum
deleyianum DSM 6946]
gi|268618516|gb|ACZ12881.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Sulfurospirillum
deleyianum DSM 6946]
Length = 579
Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats.
Identities = 102/387 (26%), Positives = 166/387 (42%), Gaps = 31/387 (8%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVPYFDRLD 69
+ GP H A L DG+ + D + HRG EKL E + + Q +R+
Sbjct: 188 VPLGPLHITADEPGHFRLFCDGDTIIDADYRLFYQHRGMEKLAENRMNYDQMGYLAERVC 247
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ A A EK + +EIP R Q IRV+ SEI R+ SHLLN+ G
Sbjct: 248 GICGYAHSIACIEAAEKAINLEIPARAQAIRVICSEIERLHSHLLNIGLACEVTGNYNAF 307
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ F RE M E +G R GG+ +D+ +++ + ++++ D
Sbjct: 308 MHIFRIREYSMKLAELVTGGRKTYGNVVMGGLRRDMTGVEIKESLKILKIIETQVDEVWD 367
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ ++ +R +G + + A + G IRGSG D R PY+ + +++FD+ +
Sbjct: 368 AIMDDQRQMKRWKGVGILDKQVARDFSAVGPNIRGSGIKRDTRYDHPYDFFKQIEFDVAV 427
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
+ GD Y R +VR ME++ SV IIRQC + +
Sbjct: 428 VEGGDVYAREMVRYMELKSSVSIIRQCFELMPQTAIIVDPKFHVK--------------- 472
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
P A VEAP+GE +++ K +R + RA Y + ++
Sbjct: 473 ---------------PENYALAYVEAPRGENVHWIMQGSAQKVFRWRCRAATYNNWPSLR 517
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVDR 396
F +G+ +AD + I+ SLD + +R
Sbjct: 518 FQFRGNTIADAALIVCSLDPCYSCTER 544
>gi|239618412|ref|YP_002941734.1| NADH dehydrogenase (quinone) [Kosmotoga olearia TBF 19.5.1]
gi|239507243|gb|ACR80730.1| NADH dehydrogenase (quinone) [Kosmotoga olearia TBF 19.5.1]
Length = 368
Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats.
Identities = 118/392 (30%), Positives = 200/392 (51%), Gaps = 26/392 (6%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ + GP HP HG + + ++G+ V + G LHRG EKL+E + + Q +
Sbjct: 2 GKEVKLFIGPNHPGMHGNSSVHIYVEGDTVVKARLVPGFLHRGFEKLMERRNWFQNLALI 61
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
R+ P E +A+ VE L GIE+P R IR++ E+ R+ +HL+ + G
Sbjct: 62 PRICVPEPDINEMVFAMGVETLAGIEVPERAHWIRMIILELARMAAHLMAMGGIGGATGL 121
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
P W +R++++ +E+ +G+R++ Y PGGV +D+P + E+I + F S
Sbjct: 122 YAMPQWTLADRDRILDIFEKITGARIYHMYIIPGGVRKDLPEGIEEEIEALLNYFESRRT 181
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ +LL NR+ R + + E+A G +GV +R +G +D+RK PY Y++++F
Sbjct: 182 EYENLLLKNRVIHTRTKGLAVLTKEEALKIGVTGVGLRATGVPYDIRKVDPYARYADVEF 241
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
D+P GD Y R+ ++ +E +S++IIRQC+ ++ VS
Sbjct: 242 DVPTATEGDAYARFSLKYLEFLQSIRIIRQCLKKMPKGPVNVRVSRGSALR--------- 292
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH- 364
+ VP G+VY+ +E +GE+G ++SDGG KPYR +R +
Sbjct: 293 ----------------WRVPAGKVYSHIECSRGEYGYLIVSDGGEKPYRVHVRGASFPQG 336
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
L +E L G ++ DV+ LG++D E+DR
Sbjct: 337 LYGIEKLLPGTRIEDVALWLGTMDFCPPEIDR 368
>gi|325295366|ref|YP_004281880.1| NADH dehydrogenase (quinone) [Desulfurobacterium thermolithotrophum
DSM 11699]
gi|325065814|gb|ADY73821.1| NADH dehydrogenase (quinone) [Desulfurobacterium thermolithotrophum
DSM 11699]
Length = 388
Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats.
Identities = 132/393 (33%), Positives = 200/393 (50%), Gaps = 33/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ + +N+G QHPA+ G +RL + +DG+ V ++DP IG + R EKL+E ++++ A+
Sbjct: 28 QEKLLQLNWGVQHPAS-GPMRLKVWIDGDEVVKIDPDIGYVFRLLEKLVEYRSWINAIVN 86
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
+R+ ++ Y++ EK+ GIEIP + IR + E GRI+SHLL + + +G
Sbjct: 87 VERICFMDDFGTMTGYSITAEKIAGIEIPKKANYIRTILCEGGRIVSHLLGLGSFVGIMG 146
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS-A 183
TP W REK + +E SG R+ + PGGV + + ++ + +
Sbjct: 147 VNTPMQWALIAREKFLDSFEIYSGQRIATSSIVPGGVRYEPTKKFIDKMLEAINYLEKEF 206
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ N K R+ +G + E A G +G +R SG A D+RK PY Y EL
Sbjct: 207 IPRYEEVFIDNPTLKMRSKGVGVIPKEKAIKIGLAGPALRASGIASDIRKDYPYAAYGEL 266
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DF++ K GD Y RY V E++ESVKIIRQ ++ L
Sbjct: 267 DFNVVTKKDGDSYARYCVLFEELKESVKIIRQAIDGLPEGEY------------------ 308
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+P GE Y VE +G FG +L+SDGG PYR K+RAP +A
Sbjct: 309 -------------KVRFPIKIPPGEAYVNVEWARGCFGFHLVSDGGTGPYRLKMRAPSFA 355
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L AM + KG +LADV I SL + G++DR
Sbjct: 356 NLWAMPEMIKGVKLADVPVIFASLYMCHGDIDR 388
>gi|324501371|gb|ADY40613.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 [Ascaris
suum]
Length = 390
Score = 303 bits (777), Expect = 3e-80, Method: Composition-based stats.
Identities = 154/288 (53%), Positives = 212/288 (73%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ +K + +NFGPQHPAAHGVLRL+L+L+GE++ + PHIGLLHRGTEKL+E KT+ Q
Sbjct: 101 LREKALENMILNFGPQHPAAHGVLRLVLKLEGEVIIKAMPHIGLLHRGTEKLMEHKTYTQ 160
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+P+ DRLDYV + E A+ALA+EKLLGIE+P R + IR L++E+ RI +H VTT A
Sbjct: 161 CMPFMDRLDYVTMLCSEQAFALAIEKLLGIEVPPRAKWIRTLFAELNRIANHAFGVTTHA 220
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+D+GA+TP W FEEREKL F ER SG+RMH YFRPGGV D+P L++DI W + F
Sbjct: 221 LDIGAMTPLFWLFEEREKLFEFNERVSGARMHINYFRPGGVSYDLPLGLLDDIYDWAEKF 280
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P ++++ D+LT NRI+K R ++IG V DA +G+SGVM+R SG WD+RK+ PY+ Y
Sbjct: 281 PERIDELEDMLTDNRIWKARTIDIGLVSAADALNFGYSGVMLRSSGVKWDVRKATPYDAY 340
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGP 288
+++FD+P+G GDCYDRYL R+ EMR+S++I+ QC+N++
Sbjct: 341 DQVEFDVPVGTKGDCYDRYLCRVEEMRQSLRIVHQCLNKMPAWRGQSR 388
>gi|323156090|gb|EFZ42249.1| hydrogenase-4 component G [Escherichia coli EPECa14]
Length = 463
Score = 303 bits (777), Expect = 3e-80, Method: Composition-based stats.
Identities = 102/398 (25%), Positives = 163/398 (40%), Gaps = 50/398 (12%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + + L +DGE + D + +HRG EKL ET+ +
Sbjct: 82 INEGNSDAQVIPVGPLHITSDELGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 141
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 142 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 201
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E GSR GGV +DI E
Sbjct: 202 CHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 261
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A DLR PY
Sbjct: 262 MRADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYAD 305
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 306 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 350
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 351 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 393
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 394 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 431
>gi|147920957|ref|YP_685235.1| [NiFe]-hydrogenase, large subunit (EchE-like) [uncultured
methanogenic archaeon RC-I]
gi|110620631|emb|CAJ35909.1| [NiFe]-hydrogenase, large subunit (EchE-like) [uncultured
methanogenic archaeon RC-I]
Length = 486
Score = 303 bits (776), Expect = 4e-80, Method: Composition-based stats.
Identities = 108/387 (27%), Positives = 168/387 (43%), Gaps = 30/387 (7%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
TI +GP HPA + ++ E+V++ D +G HR KL+E + + + + +R+
Sbjct: 113 TIPYGPYHPAFIESNYFKMAVEDEVVKKADLKLGFNHRSIIKLMERRDYYKDIYLAERVC 172
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + ++ LAVE + + +P R +IR + E+ RI SHL+ + VG T
Sbjct: 173 GLCNAHHALSFCLAVENIGQVTVPKRADIIRTMICEMERIQSHLMAIGILGDLVGYKTML 232
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ RE + E SG R+ GGV +DI P + S + + D
Sbjct: 233 MQFLRIREDIQDSLELVSGQRVTHGLITLGGVRRDITPAQSNFVKRKLASLKKGVQTLYD 292
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ N + R N+G + E+A G G RGSG D+RK+ PY Y LD+DI
Sbjct: 293 EMLSNNVLIGRLKNVGVLPPEEAVRLGAVGPTARGSGQRLDVRKNTPYAYYENLDWDIVT 352
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
D R V+M E S+ I+ QC+ +L ++ +E
Sbjct: 353 DNGCDSLARVEVKMREALVSISIVEQCLEKLSTVPP-----------------EIITKLE 395
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
L P E E P+GE ++ S+G N P +IR P + M
Sbjct: 396 EL-------------PCAEALGKTEPPRGELLYHVASNGTNTPEFVRIRVPTFMTAYIML 442
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVDR 396
L G +ADV AI+GS+D + DR
Sbjct: 443 KLLHGSYVADVPAIMGSIDPCYSCTDR 469
>gi|218888272|ref|YP_002437593.1| NADH dehydrogenase (quinone) [Desulfovibrio vulgaris str. 'Miyazaki
F']
gi|218759226|gb|ACL10125.1| NADH dehydrogenase (quinone) [Desulfovibrio vulgaris str. 'Miyazaki
F']
Length = 377
Score = 303 bits (776), Expect = 4e-80, Method: Composition-based stats.
Identities = 114/388 (29%), Positives = 176/388 (45%), Gaps = 32/388 (8%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
FT+ GP H A + + ++GE V+RVD G +HRG E L + Q + +R+
Sbjct: 22 FTLPVGPLHVALEEPMYFRVSVEGETVKRVDITAGHVHRGMEALALRRNLFQNIVLTERV 81
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+ + Y +AVE L GI +P R + +R + EI RI SHL NV A +G +
Sbjct: 82 CSLCSNSHPFTYCMAVENLAGIVVPERARYLRSMAEEIKRIASHLFNVAILAHIIGFKSL 141
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
+ E RE + E G+RM A GGV ++ +L+ + D + +I
Sbjct: 142 FMHVMEVREIMQDIKETVYGNRMDLAANCIGGVKYNVDADLLTFLTRNLDRVQKHVEEIY 201
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
++ + + + R V +G + EDA + G + RGSG A D+RK P+ YS L FD+
Sbjct: 202 NIYRNDPMVRGRTVGVGVLSPEDAVEYAVVGPVARGSGLAVDIRKDVPHAAYSRLAFDVI 261
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
D + R LVR+ E ES+ ++RQC L G +
Sbjct: 262 TETGCDVHSRALVRLREALESISLVRQCARDLPGGD------------------------ 297
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
+P GE A EAP+GE +L +DG + P R K R P Y + A+
Sbjct: 298 --------TVARLPEIPAGEAVARSEAPRGELIYFLRTDGTDVPNRLKWRVPSYMNWDAL 349
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +++DV I+ S+D +R
Sbjct: 350 GVMMHDCKVSDVPLIVNSIDPCISCTER 377
>gi|320532542|ref|ZP_08033352.1| NADH dehydrogenase subunit D [Actinomyces sp. oral taxon 171 str.
F0337]
gi|320135247|gb|EFW27385.1| NADH dehydrogenase subunit D [Actinomyces sp. oral taxon 171 str.
F0337]
Length = 427
Score = 303 bits (775), Expect = 4e-80, Method: Composition-based stats.
Identities = 151/373 (40%), Positives = 206/373 (55%), Gaps = 23/373 (6%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
D+ ++ +N GP HP+ HGVLRL+LE DGE+V V G LH G EK +E +T++Q
Sbjct: 45 DRLRNDRIVLNMGPVHPSTHGVLRLVLEADGEVVTEVRVGTGYLHTGIEKNMEYRTWVQG 104
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ R+DYVAP QE YALAVEKLLGI +IP + + RVL E+ RI SH++ V T
Sbjct: 105 ETFVTRMDYVAPFFQEVGYALAVEKLLGITDDIPEKATVTRVLLMELNRIASHVVAVGTG 164
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
++G T F RE ++ +E SG RM+ AY RPGG+ QDIP E +
Sbjct: 165 GNELGGTTLMTIAFRCRENILKAFEMVSGLRMNHAYIRPGGLAQDIPEGFTEFVRSVMPD 224
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
++++ LL N I K R + +G + L G +G +R +G DLR+S PY
Sbjct: 225 MKKDIHELELLLLENPILKSRFIGVGEISLAGGLALGLTGPCLRAAGYPLDLRRSNPYCG 284
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRL-----LGKNKVGPVSASDP 294
Y DF +P + DCY+R +R+ E ES+KI+ QC++RL G + +DP
Sbjct: 285 YETYDFRVPTYRVSDCYNRLRIRLDEAYESLKIVSQCLDRLDEIAARGDDPSNTTMVADP 344
Query: 295 KIVPPK----------------RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
I P R M SMESLIHHFKL T+G+ VP G+VY VE KG
Sbjct: 345 TIAWPARMSIATDGQGQSLEHVREIMGSSMESLIHHFKLVTQGFRVPAGQVYQTVEHAKG 404
Query: 339 EFGVYLISDGGNK 351
GV+ +SDGG +
Sbjct: 405 ILGVHAVSDGGTR 417
>gi|46580696|ref|YP_011504.1| carbon monoxide-induced hydrogenase CooH [Desulfovibrio vulgaris
str. Hildenborough]
gi|46450115|gb|AAS96764.1| carbon monoxide-induced hydrogenase CooH, putative [Desulfovibrio
vulgaris str. Hildenborough]
gi|311234415|gb|ADP87269.1| NADH dehydrogenase (quinone) [Desulfovibrio vulgaris RCH1]
Length = 366
Score = 303 bits (775), Expect = 4e-80, Method: Composition-based stats.
Identities = 119/391 (30%), Positives = 178/391 (45%), Gaps = 32/391 (8%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
++++T+ GP H A + L++DGEIV V+ G +HRG E L + Q +
Sbjct: 8 TQTWTLPVGPLHVALEEPMYFKLDVDGEIVRNVEITAGHVHRGMEALAMRRNLFQNIVLT 67
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
+R+ + + Y +AVE L GIE+P R +RV+ EI R SHL NV A +G
Sbjct: 68 ERVCSLCSNSHPFTYCMAVEHLAGIEVPARADHLRVVAEEIKRTASHLFNVAILAHIIGF 127
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ + E RE + E G+RM A GGV D+ EL+ + D
Sbjct: 128 KSLFMHVMEVREIMQDIKETVYGNRMDLAANCIGGVKYDVDAELLAMLLAGLDKVERNAR 187
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+I + + + R IG + ++A +G G + RGSG A D+R+ PY Y +L F
Sbjct: 188 EIYRIYASDPMVTGRTTGIGVLPPDEARRFGVVGPVARGSGLAVDVRRDVPYAAYPQLSF 247
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
D+ + D R LVR+ E+ ES+ IIRQCV L M
Sbjct: 248 DVITEEGCDVRARALVRLREVFESISIIRQCVATLPEG-------------------AMT 288
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
M +P G+ A EAP+GE YL +DG + P R K R P Y +
Sbjct: 289 VIM-------------PEIPAGQSVARSEAPRGELMYYLRTDGTDIPNRLKWRVPSYMNW 335
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A+ + + +AD+ I+ S+D +R
Sbjct: 336 DALGVMMRDANVADIPLIVNSIDPCISCTER 366
>gi|284162674|ref|YP_003401297.1| NADH-quinone oxidoreductase subunit beta [Archaeoglobus profundus
DSM 5631]
gi|284012671|gb|ADB58624.1| NADH-quinone oxidoreductase, B subunit [Archaeoglobus profundus DSM
5631]
Length = 709
Score = 302 bits (774), Expect = 5e-80, Method: Composition-based stats.
Identities = 118/393 (30%), Positives = 187/393 (47%), Gaps = 30/393 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K + + GPQHP + G +RLI++LDG+I++ V P G +HRG EK+ E++ +++ +P
Sbjct: 346 KGDEYILVVGPQHPGS-GHMRLIVKLDGDIIKDVIPDPGYVHRGVEKIAESRIYIKNIPL 404
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
+R N + Y A+E+ LGIE+ R + IR + +E+ RI +HL + ++ +G
Sbjct: 405 VERPCITDFANYDICYVKAIEEALGIEVSERAKYIRTILAELCRIGTHLYDAGILSIFLG 464
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
T +W F RE + +G+R+ ++ PGGV D+ E + + + L
Sbjct: 465 HSTGFMWAFGLREFVCEALTILTGARVTGSFIVPGGVRWDVSDEKLRRVREIVLAMRRRL 524
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ N R N+G + +DA G G +R S D R YE Y +D
Sbjct: 525 EKFEKMFVKNPTVVARLENVGILSKKDAKELGIVGPFLRASNVRHDWRLKG-YEAYDCVD 583
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
+D+ + GD Y R LVR+ E+ +S+KII Q V L G K+
Sbjct: 584 WDVVTAEEGDSYARLLVRVEEINQSIKIIDQLVRDL----PSGETKVDMWKLT------- 632
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG-GNKPYRCKIRAPGYA 363
+P+GE + VE +G + ++SDG PYR +I P +
Sbjct: 633 ----------------DLVLPLGEFVSCVEGARGTIYMSIVSDGESTTPYRFRIVTPSWY 676
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L+ CKG +LAD+ AI GS E DR
Sbjct: 677 NLRGFVEACKGERLADLQAIYGSFGYFPPEADR 709
>gi|315231249|ref|YP_004071685.1| membrane bound hydrogenase NiFe-hydrogenase large subunit 2
[Thermococcus barophilus MP]
gi|315184277|gb|ADT84462.1| membrane bound hydrogenase NiFe-hydrogenase large subunit 2
[Thermococcus barophilus MP]
Length = 428
Score = 302 bits (774), Expect = 5e-80, Method: Composition-based stats.
Identities = 110/404 (27%), Positives = 180/404 (44%), Gaps = 32/404 (7%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M++K I GP HPA + I+ LDGE + VD +G RG E + + ++Q
Sbjct: 1 MNEKIEYWVKIPIGPIHPALEEPEKFIITLDGERIINVDVKLGYNLRGLEWIAMRRNWIQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ +R+ + + H YA AVE++ GIE+P R + IRV+ E+ RI SHLLN+ A
Sbjct: 61 VLYLAERICGICSFSHNHTYARAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVVA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+G T + RE++M E G+R++ A GGV +DI I +
Sbjct: 121 HTIGYDTVLHLSWLARERVMDILEDIGGNRVNYAGNMIGGVRRDIKDRHKRAILEMIQYY 180
Query: 181 P-SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ + ++ + + R + G + A + G RGSG D+R ++
Sbjct: 181 RQEVMPKVEEIFLYDPTVEARLRDSGVIPKRVAIEYSAQGPTARGSGIRKDVRYNEKLGV 240
Query: 240 YSELDFDIPIGK------HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASD 293
Y +L K GD +DR +VR+ E+ S++II + ++++ +
Sbjct: 241 YPDLGVKPVTPKEFTGVVKGDVFDRMVVRVGEIWNSMEIIERALDQMPEGKIKA-FPKDN 299
Query: 294 PKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLIS-DGGNKP 352
+V K+A+ GE EAP+GE Y+ + G + P
Sbjct: 300 LILVKLKKAE-----------------------GEGIGRYEAPRGELIHYVRAEKGKDGP 336
Query: 353 YRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ K+R P + +L A+ G QLADV + S+D DR
Sbjct: 337 AKWKMREPTFPNLFAVARALVGEQLADVPVAIASIDPCLSCTDR 380
>gi|150021106|ref|YP_001306460.1| NADH dehydrogenase subunit D [Thermosipho melanesiensis BI429]
gi|218534468|sp|A6LMC4|NUOD_THEM4 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|149793627|gb|ABR31075.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429]
Length = 367
Score = 302 bits (774), Expect = 6e-80, Method: Composition-based stats.
Identities = 122/390 (31%), Positives = 197/390 (50%), Gaps = 26/390 (6%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
+ FGP HP HG + + ++G+ V + P G LHRG EKL+E + + Q + R
Sbjct: 3 EVKLFFGPNHPGMHGNFSVHMYVEGDTVVKARPLPGFLHRGFEKLMERRLWYQNLALIPR 62
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ P E YALAVEK+ I++P R Q IR++ E+ RI +HL + + +G T
Sbjct: 63 ICVPEPDINELCYALAVEKIAKIDVPERAQWIRMIVLELARIANHLWSFSGIGGPIGLYT 122
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
WG +R++++ +E +G+R++ Y PGGV +D+ P++ + I D S L D
Sbjct: 123 GSFWGTADRDRILDIFENLTGARVYHMYIVPGGVRKDLTPKIEKMILETLDYIESRLPDY 182
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
L+ NRI R I + E A G +GV +R +G +D+RK PY Y ++DF++
Sbjct: 183 EKLILKNRIVHTRLKGIAKLDRETALEMGVTGVGLRATGVPYDIRKVDPYLFYDKVDFEV 242
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
P GD + R ++ E+ +S+KI++Q + ++ P+S
Sbjct: 243 PFSTDGDAFARVYLKFREIFQSIKIVKQALEKMPVGKVNTPISEGSALR----------- 291
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY-AHLQ 366
+ VP G+ Y +E+ +GE+G Y++SDGG KPYR +R Y
Sbjct: 292 --------------FRVPKGQAYVHIESTRGEYGYYMVSDGGEKPYRVVVRGASYPQTFI 337
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+E G ++ DV L ++D+ EVDR
Sbjct: 338 GVEKYLPGTRIEDVPIWLSTMDVCAPEVDR 367
>gi|52550196|gb|AAU84045.1| F420H2-quinone oxidoreductase 45 kD subunit [uncultured archaeon
GZfos36D8]
Length = 439
Score = 302 bits (774), Expect = 6e-80, Method: Composition-based stats.
Identities = 116/396 (29%), Positives = 199/396 (50%), Gaps = 9/396 (2%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ +K+ F GP H + G LR ++ + G+I++ V P G +HR EK+ E + ++Q
Sbjct: 52 EAEKNDEFVAFIGPHHSGS-GHLRWVMRMKGDIIKDVIPDPGYVHRSMEKIAENRLYIQN 110
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
VP +R + P+N Y A+E LGIE+P R + IR + +E+ RI + ++ +
Sbjct: 111 VPLTERPNISDPINMNLGYVRAIENALGIEVPERAKYIRTIMAELSRIGAFFYDMGIFPL 170
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
+G T ++ F RE ++ R +GSR ++ PGG+ +DIP ++++ + +
Sbjct: 171 FMGHSTGFMYSFAIREMVLELMVRMTGSRCTPSFIIPGGIRRDIPDDVLDRTRKFTTAIH 230
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
L ++ N + R +G + E+A G G +R SG +D+RK++PYE Y
Sbjct: 231 KRLKKYENIFVYNPVLISRMKEVGVLTREEAIRCGIVGPFLRASGVEYDVRKAEPYEVYD 290
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+LD++ G GDC R R+ EM++SV+I+RQ V+ + + G +S
Sbjct: 291 KLDWEATTGDAGDCLGRIFGRLEEMKQSVEIVRQAVDAVQEMPRGGVIS-------EEIL 343
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG-GNKPYRCKIRAP 360
D K + + + + +P GE + EA +G +ISDG N PYR +I P
Sbjct: 344 GDYKEASDDIRGYLYNVYGDLVLPKGEWTSVTEAARGTVLYSIISDGESNVPYRVRIITP 403
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +L+ + KG ++AD + S E DR
Sbjct: 404 CWMNLRGIIEASKGERVADFWTVYASFGYFPPEADR 439
>gi|89271541|emb|CAI39186.1| NADH dehydrogenase subunit 7 [Euplotes minuta]
Length = 382
Score = 302 bits (774), Expect = 6e-80, Method: Composition-based stats.
Identities = 172/382 (45%), Positives = 234/382 (61%), Gaps = 12/382 (3%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
+HGVLR +L+L+GE + D +IG LHRGTEKLIE +T+L+++PYFDRLDYV+ M+QEHA
Sbjct: 1 SHGVLRFVLQLEGEYIRHADANIGFLHRGTEKLIEQRTYLKSLPYFDRLDYVSMMSQEHA 60
Query: 80 YALAVEKLLGI-EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREK 138
Y LA+E LLG +R L+ E+ R+++H L ++T ++DVG ++P W FEERE+
Sbjct: 61 YCLAIENLLGSSTFTSFFVQVRALFDELTRLMNHFLGISTHSLDVGNMSPAFWAFEERER 120
Query: 139 LMVFYERASGSRMHAAYFRPGGVHQDIPP-ELVEDIGCWCDSFPSALNDISDLLTGNRIF 197
LM FYER SG+RMHAA++RP + + D+ + ++ ++ ++ +L N I+
Sbjct: 121 LMEFYERVSGARMHAAFYRPNDLDWTGLNYQFFIDLLFFLNNTYKSITEMFVILATNSIW 180
Query: 198 KQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLR--KSQPYECYSELDFDIPIGKHGDC 255
+ R V IG V + SGV+ R +G DLR K+ Y Y L +GK GDC
Sbjct: 181 RSRLVRIGVVDNAQVPLFAASGVVSRSAGFKKDLRILKTSTYSYYWFLKLRSFLGKMGDC 240
Query: 256 YDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASD--------PKIVPPKRADMKRS 307
YDR+++R+ EM ESV II Q V+ LL + + S
Sbjct: 241 YDRFIIRIREMLESVFIIYQIVSNLLVVFESTTALPFWYNTESYVSATFTKSQFNKKSTS 300
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
ME+LI HFK Y+EG VP G VY +VEAPKGEFGV LISDG +KP+RCKIR P Y HLQ
Sbjct: 301 MEALITHFKHYSEGIKVPAGLVYQSVEAPKGEFGVSLISDGSSKPFRCKIRTPAYHHLQF 360
Query: 368 MEFLCKGHQLADVSAILGSLDI 389
M +GH AD+ ILGS DI
Sbjct: 361 MSSQIRGHFFADMITILGSQDI 382
>gi|313904890|ref|ZP_07838262.1| NADH-ubiquinone oxidoreductase chain 49kDa [Eubacterium
cellulosolvens 6]
gi|313470323|gb|EFR65653.1| NADH-ubiquinone oxidoreductase chain 49kDa [Eubacterium
cellulosolvens 6]
Length = 359
Score = 302 bits (773), Expect = 7e-80, Method: Composition-based stats.
Identities = 106/387 (27%), Positives = 177/387 (45%), Gaps = 33/387 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ FGPQHP + L L L+ E V P++G +HRG E L++ + F Q + +R
Sbjct: 6 IVPFGPQHPVLPEPVHLDLVLEDEKVIEAIPNVGFVHRGLESLVDKRDFNQMMYVIERTC 65
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ Y +E ++ +E+P R + +RV+++E+GRI SHLL + A G
Sbjct: 66 GICSFGHGMGYVETIEGIMNVEVPDRAKFLRVIWAELGRIHSHLLWMGLMADAFGFENLF 125
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ REK++ +E +G R+ + + GGV +DI PE+++ I D +
Sbjct: 126 YSCWRVREKILDLHEMTAGGRVIFSVNKVGGVIKDITPEMMKAILTTLDEVEEETKILQK 185
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + R +G + + A G G + R SG A D R + YE Y +LD + I
Sbjct: 186 TFLYDYTVESRLKGVGVLTKQQAHDLGCCGPVARASGIANDYRLTG-YEAYGQLDLEPVI 244
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
G +GD YDR VR+ E+ +S+ ++RQ + ++ PV +
Sbjct: 245 GVNGDSYDRCDVRIREVFQSIDLLRQAIAKIPEGELSVPVKGN----------------- 287
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
P GE + +E P+GE Y + G R ++R P +A+L +
Sbjct: 288 ---------------PDGEHFVRIEQPRGEAFYYTKASGKKYVDRFRLRTPTFANLAGLT 332
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVDR 396
KG LADV ++ ++D +R
Sbjct: 333 ESLKGCDLADVPILIVTIDPCISCTER 359
>gi|265755016|ref|ZP_06089930.1| NADH-quinone oxidoreductase subunit C/D [Bacteroides sp. 3_1_33FAA]
gi|263234627|gb|EEZ20206.1| NADH-quinone oxidoreductase subunit C/D [Bacteroides sp. 3_1_33FAA]
Length = 483
Score = 302 bits (773), Expect = 7e-80, Method: Composition-based stats.
Identities = 135/355 (38%), Positives = 190/355 (53%), Gaps = 29/355 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ IN GPQHPA HGVLR + L+GEI++++D H G +HRG EK+ E+ T+ Q +
Sbjct: 157 DEDEYIINIGPQHPATHGVLRFRVSLEGEIIKKLDVHCGYIHRGIEKMCESLTYPQTLAL 216
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DRLDY+ HA + +E+ +G+E+ R Q IR + E+ RI SHLL + MD+G
Sbjct: 217 TDRLDYLGAHQNRHALCMCIEQAMGVEVSERVQYIRTIMDELQRIDSHLLFFSCLCMDMG 276
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
ALT +GF +REK++ +E +G R+ Y GGV DI P+ V+ + + L
Sbjct: 277 ALTAFFYGFRDREKILDIFEATTGGRLIQNYNTIGGVQADIAPDFVQKVKEFIAYLRPML 336
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ ++ TGN I ++R +G + EDA +G +G R SG A D+RK PY Y ++D
Sbjct: 337 KEYHEVFTGNVIAQERLKGVGVLSREDAISFGATGGTGRASGWACDVRKRHPYAMYGKID 396
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F + GDC+ RY+VRM E+ ES+ II Q ++ + N M
Sbjct: 397 FREIVHTEGDCFARYMVRMEEILESMNIIEQLIDNIPEGNYQ---------------EKM 441
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
K VP G YAAVE +GEFGVYL S G PYR K RA
Sbjct: 442 K--------------PIIRVPEGNYYAAVEGSRGEFGVYLESHGDKFPYRMKFRA 482
>gi|297616848|ref|YP_003702007.1| NADH dehydrogenase (quinone) [Syntrophothermus lipocalidus DSM
12680]
gi|297144685|gb|ADI01442.1| NADH dehydrogenase (quinone) [Syntrophothermus lipocalidus DSM
12680]
Length = 359
Score = 302 bits (773), Expect = 8e-80, Method: Composition-based stats.
Identities = 107/389 (27%), Positives = 172/389 (44%), Gaps = 33/389 (8%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
S I FGPQHP L+L L+++ E V V P +G HRG EK E ++ + +R
Sbjct: 4 STIIPFGPQHPVLIEPLQLALKVEDERVVEVRPALGYTHRGLEKGAELNDVVRNIFMAER 63
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ + Y +E+LL +E P R + IR++ +E+ RI SHLL + A +G +
Sbjct: 64 VCGICSFIHSWCYCACIEELLNVESPPRAEFIRLVSAELTRIHSHLLYLGLLADGLGFES 123
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
+ + RE+++ E SG R+ GGV +DI ++V I + L +
Sbjct: 124 LFMQFWRVRERVLDLMEAISGGRVIMGNCTIGGVRKDIDADMVRAIFKEVNEVERDLVPL 183
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ + + K+R V+ G + EDA +G G + R SG D+R Y +DF++
Sbjct: 184 TRAMLNDYTVKKRTVSKGILSKEDAVKFGAVGPVARASGVRTDVRLLGE-GPYKYVDFEV 242
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
+ K GD Y R V + E+ S+ +IRQ + +L
Sbjct: 243 VLDKDGDAYARTSVHVREVFVSLDLIRQALFKLPAGGIKTEWKGRV-------------- 288
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
GEV +E P+GE Y+ G R K+R P +A++
Sbjct: 289 ------------------QGEVIKRMEQPRGEMMYYIRGSGNRNLDRFKVRTPTFANIPP 330
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + G +LADV I+ S+D +R
Sbjct: 331 LLEMLPGCELADVPVIVISIDPCIACTER 359
>gi|296121584|ref|YP_003629362.1| NADH dehydrogenase (quinone) [Planctomyces limnophilus DSM 3776]
gi|296013924|gb|ADG67163.1| NADH dehydrogenase (quinone) [Planctomyces limnophilus DSM 3776]
Length = 416
Score = 302 bits (773), Expect = 9e-80, Method: Composition-based stats.
Identities = 150/424 (35%), Positives = 216/424 (50%), Gaps = 54/424 (12%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGVLRL+L DGEIV V PH+G LHR EK+ E Q VPY
Sbjct: 15 RTDEMLVNMGPQHPSTHGVLRLVLRTDGEIVHEVIPHLGYLHRCAEKIGEHLAPPQWVPY 74
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR+DY+A MN ++L VEKL+ P + QLIRV +E+ RI SHLL + +D+G
Sbjct: 75 TDRMDYLAAMNMNLGFSLTVEKLMSQVAPPKAQLIRVFVAELNRIASHLLGMGAYGLDLG 134
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP----------------- 167
+ TP L+GF ERE ++ E G+R+ +Y PGGV D+P
Sbjct: 135 SFTPFLYGFREREIILDLLEEVCGARLTYSYVTPGGVTHDLPEAIPIPPGLAMLTGRPAG 194
Query: 168 ---ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRG 224
V+ + + D ++D LLT N IF QR +G + E A +G SG ++RG
Sbjct: 195 ATISWVDAVILFLDWLGPRIDDYHTLLTENHIFVQRTAGLGVLTREKAISYGCSGPVLRG 254
Query: 225 SGAAWDLRKSQ---PYECYSELDFDIPIGKH---------GDCYDRYLVRMMEMRESVKI 272
SG +DLR+ Y + +FDIP GD + R+ VRM+E+ +S++I
Sbjct: 255 SGVEFDLRRHGDKIYTSLYEKFEFDIPTAPFRNAPREVIVGDNWCRFYVRMLEVTQSMRI 314
Query: 273 IRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAA 332
+RQ + + H Y +P EVY
Sbjct: 315 LRQAADLWTIGGVS----------------------QDPAGHKVPYRLTTKLPAAEVYLE 352
Query: 333 VEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFG 392
E P+G+ G Y+I +G +P R + ++ + +L + LC+G LAD+ +I GSLDIV G
Sbjct: 353 TECPRGQMGFYVIGNGAAEPLRTRAKSSSFCNLSVISELCQGVLLADIPSIAGSLDIVMG 412
Query: 393 EVDR 396
E+DR
Sbjct: 413 EIDR 416
>gi|88603828|ref|YP_504006.1| NADH dehydrogenase (ubiquinone) [Methanospirillum hungatei JF-1]
gi|88189290|gb|ABD42287.1| Membrane bound hydrogenase subunit mbhL [Methanospirillum hungatei
JF-1]
Length = 409
Score = 301 bits (772), Expect = 9e-80, Method: Composition-based stats.
Identities = 107/400 (26%), Positives = 187/400 (46%), Gaps = 31/400 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+K + + GP HPA + +++GE++E+VD G HRG E + + +Q +
Sbjct: 3 QKKAPYELPIGPIHPALKEPINFTFQMNGEVIEKVDFAPGRAHRGIEWMGMRRNPVQILH 62
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + ++ +A AVE++ IE+P R +R + +E RI SH+L A ++
Sbjct: 63 LCDRICGICGVHHALVFAQAVEQIADIEVPDRAYYVRTIIAEFERIQSHILWAGVAAHEL 122
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G T ++ RE+ + E +G+R++ GG +DI ++ + +
Sbjct: 123 GFDTLFYLAWQIREESVDVIEYITGNRVNYGIMMLGGTRRDITADMFPRLEQALQYYEGL 182
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L + +L ++ R + G + A G R SG A D+R PY Y +L
Sbjct: 183 LEKMVNLFLNDKTIAMRCKDTGILTKRRALELATVGPTSRASGLAMDVRIDSPYAAYGDL 242
Query: 244 DFDIPI------GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIV 297
DFDI + +GD YDR +VR+ E+++S+ IIRQC+ ++ +
Sbjct: 243 DFDIVLPDVYNSEGNGDVYDRIIVRIFEIKQSIDIIRQCMKQMPEGPVL----------- 291
Query: 298 PPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNK-PYRCK 356
+ L+ + K + GE +A VEAP+GE Y+ +G + P K
Sbjct: 292 ------AEEKYAKLLMNLKKAS-------GEAFARVEAPRGEDMHYVRMNGKQEAPEMWK 338
Query: 357 IRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++A Y++ A + +G Q+AD+ I+ S+D DR
Sbjct: 339 VKASTYSNQMAWVEILQGEQIADIPIIVASIDPCMSCTDR 378
>gi|34558137|ref|NP_907952.1| hydrogenase 4 subunit [Wolinella succinogenes DSM 1740]
gi|34483855|emb|CAE10852.1| HYDROGENASE 4 SUBUNIT [Wolinella succinogenes]
Length = 579
Score = 301 bits (772), Expect = 1e-79, Method: Composition-based stats.
Identities = 98/388 (25%), Positives = 166/388 (42%), Gaps = 33/388 (8%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVPYFDRLD 69
+ GP H A L DG+ + D + HRG EKL E + + Q +R+
Sbjct: 188 VPLGPLHITADEPGHFRLFCDGDTIIDADYRLFYQHRGMEKLAENRMNYDQMGYLAERVC 247
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ A A EK + ++IP+R Q IR++ EI R+ SHLLN+ G
Sbjct: 248 GICGYAHAIACIEAAEKAINLQIPLRAQAIRIVCLEIERLHSHLLNIGLACEVTGNYNAF 307
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ F RE M E +G R GG+ +D+ +++ + + ++ D
Sbjct: 308 MHIFRIREYSMKLAELVTGGRKTYGNVVMGGLRRDMTGTEIKESLKILQIIETQVEEVWD 367
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ ++ R +G + + A + G IRG G D R PY+ +++++F++
Sbjct: 368 AVMDDKRQISRWKGVGILDKQVARDFSPVGPNIRGCGIKRDTRYDHPYDFFNQIEFEVAT 427
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
+ GD + R +VR ME++ SV IIRQC + +
Sbjct: 428 AQGGDVFAREMVRYMELKSSVSIIRQCFELMPQTPIM----------------------- 464
Query: 310 SLIHHFKLYTEGYHV-PVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
+HV P A VEAP+G+ +++ K YR + RA Y + ++
Sbjct: 465 --------IDPTFHVQPENFALAYVEAPRGDNVHWIMQGSAQKVYRWRCRAATYNNWPSL 516
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVDR 396
F +G+ +AD + I+ SLD + +R
Sbjct: 517 RFQFRGNTIADAALIVCSLDPCYSCTER 544
>gi|89271543|emb|CAI39187.1| NADH dehydrogenase subunit 7 [Moneuplotes crassus]
Length = 382
Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats.
Identities = 171/382 (44%), Positives = 234/382 (61%), Gaps = 12/382 (3%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
+HGVLR +L+L+GE + D +IG LHRGTEKLIE +T+L+++PYFDRLDYV+ M+QEHA
Sbjct: 1 SHGVLRFVLQLEGEYIRHADANIGFLHRGTEKLIEQRTYLKSLPYFDRLDYVSMMSQEHA 60
Query: 80 YALAVEKLLGI-EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREK 138
Y LA+E LLG +R L+ E+ R+++H L ++T ++DVG ++P W FEERE+
Sbjct: 61 YCLAIENLLGSSTFTSFFVQVRALFDELTRLMNHFLGISTHSLDVGNMSPAFWAFEERER 120
Query: 139 LMVFYERASGSRMHAAYFRPGGVHQDIPP-ELVEDIGCWCDSFPSALNDISDLLTGNRIF 197
LM FYER SG+RMHAA++RP + + D+ + ++ ++ ++ +L N I+
Sbjct: 121 LMEFYERVSGARMHAAFYRPNDLDWTGLNYQFFIDLLFFLNNTYKSITEMFVILATNNIW 180
Query: 198 KQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLR--KSQPYECYSELDFDIPIGKHGDC 255
+ R V IG V + SGV+ R +G DLR K+ Y Y L +GK GDC
Sbjct: 181 RSRLVRIGVVDNAQVPLFAASGVVSRSAGFKKDLRILKTSTYSYYWFLKLRSFLGKMGDC 240
Query: 256 YDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASD--------PKIVPPKRADMKRS 307
YDR+++R+ EM ESV II Q ++ LL + + S
Sbjct: 241 YDRFIIRIREMLESVFIIYQIISNLLVVFESTTALPFWYNTESYVSATFTKSQFNKKSTS 300
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
ME+LI HFK Y+EG VP G VY +VEAPKGEFGV LISDG +KP+RCKIR P Y HLQ
Sbjct: 301 MEALITHFKHYSEGIKVPAGLVYQSVEAPKGEFGVSLISDGSSKPFRCKIRTPAYHHLQF 360
Query: 368 MEFLCKGHQLADVSAILGSLDI 389
M +GH AD+ ILGS DI
Sbjct: 361 MSSQIRGHFFADMITILGSQDI 382
>gi|268324502|emb|CBH38090.1| F420H2-quinone oxidoreductase, subunit BCD fusion [uncultured
archaeon]
Length = 772
Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats.
Identities = 113/393 (28%), Positives = 189/393 (48%), Gaps = 10/393 (2%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ GP H + G LR+ + G+I+ P G +HR EK+ E K ++Q VP
Sbjct: 389 DKDEIVVPIGPHHAGS-GHLRVTFRIKGDIIVDAIPEPGFVHRSMEKIAENKLYIQNVPL 447
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
F+RL P+N Y +E LG+E+P R Q +R + +E+ RI + + ++ G
Sbjct: 448 FERLAINDPVNMNLGYVRTLENALGLEVPERAQYLRTIMAELSRIEAFYYDAGIFSLFFG 507
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
T ++ RE ++ + +GSR ++ PGG+ +DI ++++ + +
Sbjct: 508 HTTGFMYAMAIREMVIEVLMKMTGSRSGPSFLVPGGMRRDIADDVLKVTDNLTFAIHKRM 567
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
D+ N + R +G + DA G G +R SG +DLRK PYE Y +L+
Sbjct: 568 KKFEDIFVYNPVTIARAKGVGVLTKADAIRCGMVGPFLRASGVNYDLRKIAPYEAYDKLN 627
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
+++ G GDC R+L R+ E++ESV+II+Q V+ K+ GP+ + D +
Sbjct: 628 WEVTTGDDGDCLGRFLGRLAEIKESVRIIKQAVD--AVKSIKGPILSDDV------LGEY 679
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG-GNKPYRCKIRAPGYA 363
K + + +F +P GE E +G ++SDG N PYR ++ +P +
Sbjct: 680 KEAANDIKGNFFRVFGNLVLPKGEWTTVTEVARGTLLFSIMSDGESNVPYRVRVISPCWM 739
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L+ KG + AD A+ GS E DR
Sbjct: 740 NLRGFMEALKGERYADFWAVYGSFGYFPPEADR 772
>gi|257460515|ref|ZP_05625616.1| hydrogenase-4 component G [Campylobacter gracilis RM3268]
gi|257441846|gb|EEV16988.1| hydrogenase-4 component G [Campylobacter gracilis RM3268]
Length = 578
Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats.
Identities = 92/387 (23%), Positives = 168/387 (43%), Gaps = 31/387 (8%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVPYFDRLD 69
+ GP H + L DG+ + D + HRG EKL E + + Q +R+
Sbjct: 188 VPLGPLHVTSDEPGHFRLFCDGDEIIDADYRLFYQHRGMEKLAENRMNYDQMGYLAERVC 247
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ A A EK + +EIP+R Q IRV+ EI R+ SHLLN+ G
Sbjct: 248 GICGYAHAIACIEAAEKAIKLEIPLRAQAIRVICLEIERLHSHLLNIGLACEVTGNYNAF 307
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ F RE M + +G R GG+ +D+ + + +++I D
Sbjct: 308 MHIFRVREYSMELAQLVTGGRKTYGNVIMGGLRRDMTDNEIRKSIEIINKLDVQISEIWD 367
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ ++ R +G + + A + G +R SG D R PY+ +++++F++ +
Sbjct: 368 AVMEDKRQIGRWKGVGVLDRKVARDFSPVGPNMRASGFKRDNRYDHPYDFFNKIEFEVAV 427
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD + R +VR E+++S+ IIRQC++++ P+ ++ P+ +
Sbjct: 428 EHGGDVFSREVVRYKELKQSIHIIRQCLHQM----PQTPIMIDPQTMIRPENYALGHD-- 481
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
EAP+GE +++ K YR + RA Y + ++
Sbjct: 482 ------------------------EAPRGENVHWIMQGNAQKVYRWRCRAATYNNWPSLR 517
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVDR 396
F +G+ ++D + I+ S+D + +R
Sbjct: 518 FQFRGNNISDAALIVCSMDPCYSCTER 544
>gi|171185125|ref|YP_001794044.1| NADH dehydrogenase subunit D [Thermoproteus neutrophilus V24Sta]
gi|170934337|gb|ACB39598.1| NADH dehydrogenase (quinone) [Thermoproteus neutrophilus V24Sta]
Length = 402
Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats.
Identities = 128/386 (33%), Positives = 202/386 (52%), Gaps = 8/386 (2%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
I +GPQHP++ G R I+E+DG+IV V P G +HR EKL ET+ ++Q +P F+RL
Sbjct: 25 IFWGPQHPSS-GHTRFIVEVDGDIVVNVTPDPGYVHRTMEKLGETRHWIQNIPLFERLSL 83
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+N AY++AVEKL +++ R Q +RV+ E+ RI +HL ++ A+ +G+ T +
Sbjct: 84 PDAINVTWAYSMAVEKLAKLDVSPRAQYLRVIMGELSRISTHLYDLGLHAIMIGSSTGFM 143
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
WGF RE L+ + A+GSR ++ PGGV P E + + +++ +
Sbjct: 144 WGFGLRELLVQLWAMATGSRTTPSWVVPGGVRTAPPDAFYEQTRGFLEYLEKKVDEFVRV 203
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
+ N + R ++G + EDA +G R SG WD R+ Y Y EL++++ +
Sbjct: 204 VVKNPVGYYRLKDVGYLSREDAARLMATGPAARASGIEWDARRVYKYGVYDELEWNVCVE 263
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
GD R +VR+ E+RESVKIIRQ ++R+ + + V + +PPK +
Sbjct: 264 DGGDSLARAMVRICEIRESVKIIRQALDRVPREGPL--VGDAVLHRLPPKHKERANEHIK 321
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
L F +P E E +G + ++ DG KPYR +I P + +++AM
Sbjct: 322 LGAFF-----TTTLPQAEGLGVSEGGRGRYFFHVFGDGTEKPYRVRISTPSWQNVRAMVK 376
Query: 371 LCKGHQLADVSAILGSLDIVFGEVDR 396
G +L D+ AI GS E DR
Sbjct: 377 AFVGSRLMDLPAIYGSFGYFPPEQDR 402
>gi|307299702|ref|ZP_07579496.1| NADH dehydrogenase (quinone) [Thermotogales bacterium mesG1.Ag.4.2]
gi|306914629|gb|EFN45021.1| NADH dehydrogenase (quinone) [Thermotogales bacterium mesG1.Ag.4.2]
Length = 370
Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats.
Identities = 121/394 (30%), Positives = 200/394 (50%), Gaps = 26/394 (6%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K S+ + GP HP HG + L ++G+ V R G LHRG EKL+E + ++Q +
Sbjct: 2 KMSKEVKLFLGPNHPGMHGNSSVHLYVEGDTVVRSRLVPGFLHRGFEKLMERRGWMQNLA 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
R+ P E YA+AVE L G E+P R IR++ E+ RI SHL+ +
Sbjct: 62 LIPRICVPEPDINEMVYAMAVEALTGTEVPERAHWIRMIILELARIASHLMALGGVGGST 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G T W +R++++ +E+ +G+R++ Y PGGV +D+P + +I + D S
Sbjct: 122 GLYTISHWTLADRDRILDIFEKITGARIYHMYIVPGGVRKDLPEGIESEIVEFLDYIESR 181
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
++ +LL NRI + R + + E+A G +GV +R +G +D+RK PY Y +
Sbjct: 182 SDEFENLLLKNRIIRTRTEGLALLTREEALEIGVTGVGLRATGLPYDIRKIDPYAKYDSV 241
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
FDIP GD + R+ ++ EM +S++I+RQ + ++ +S+
Sbjct: 242 AFDIPTATEGDAFARFTLKYYEMMQSIRILRQVLEKMPEGPVNAKISSGSALR------- 294
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ VP G VY +E+ +GE+G +++SDGG +PYR +R +
Sbjct: 295 ------------------WRVPEGTVYTHIESSRGEYGYFVVSDGGERPYRINVRGASFP 336
Query: 364 H-LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
L +E L G ++ DV+ L ++D E+DR
Sbjct: 337 QGLYGVEKLLAGTRIEDVALWLTTMDFCPPEIDR 370
>gi|254479473|ref|ZP_05092799.1| Respiratory-chain NADH dehydrogenase, 49 Kd subunit subfamily
[Carboxydibrachium pacificum DSM 12653]
gi|214034596|gb|EEB75344.1| Respiratory-chain NADH dehydrogenase, 49 Kd subunit subfamily
[Carboxydibrachium pacificum DSM 12653]
Length = 335
Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats.
Identities = 111/367 (30%), Positives = 171/367 (46%), Gaps = 32/367 (8%)
Query: 30 LDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLG 89
++ E V P G +HRG E L++ + F Q V D + + Y AVEKL+G
Sbjct: 1 VEDEKVVEAYPAFGYVHRGLELLVKKRDFNQMVYVVDHICGICSAIHGETYCQAVEKLIG 60
Query: 90 IEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGS 149
I++P R + +RV+++EI RI SHLL A G + + REK+M E +G+
Sbjct: 61 IDVPERAKFLRVIWAEIHRIHSHLLWFGLLADAFGFENLFMLSWRIREKVMDILEATAGN 120
Query: 150 RMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKL 209
R+ + GGV +DI E + + L +I ++ N K+R V IG +
Sbjct: 121 RVVISVNIVGGVRRDIDSEQAKWVLAQLKEVEEGLKEIEKIVRDNYTLKKRTVGIGVLSK 180
Query: 210 EDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRES 269
E+A+ G G +RGSG D R Y Y LDF+ + K GD Y R LVR+ EM +S
Sbjct: 181 EEAYMLGAVGPTLRGSGVPIDTRTLG-YAAYKYLDFEPVVEKDGDTYARTLVRLREMFQS 239
Query: 270 VKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEV 329
+ ++RQ ++++ V ++P GEV
Sbjct: 240 IDLVRQAISKMPEGEINVKVK-------------------------------PNLPAGEV 268
Query: 330 YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDI 389
E P+GE Y+ S+GG R +IR P +A+L A+ + G LADV ++ ++D
Sbjct: 269 IERAEQPRGEVFYYIKSNGGKYLDRLRIRTPTFANLAALLHMLPGCTLADVPVLVLTIDP 328
Query: 390 VFGEVDR 396
+R
Sbjct: 329 CISCTER 335
>gi|118576846|ref|YP_876589.1| NADH-ubiquinone oxidoreductase, subunit D [Cenarchaeum symbiosum A]
gi|118195367|gb|ABK78285.1| NADH-ubiquinone oxidoreductase, subunit D [Cenarchaeum symbiosum A]
Length = 379
Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats.
Identities = 125/396 (31%), Positives = 207/396 (52%), Gaps = 27/396 (6%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
++K R T+N GPQHP + G +RL++++DG+ + DP G +HRG EK+ E + F+
Sbjct: 11 IEKADDRIMTLNVGPQHPGS-GHMRLVVKIDGDYIVSCDPDPGYVHRGEEKMAEYRNFVL 69
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+P+ +R N + Y LA E ++G+E+P R + +RV+ SE+ + + +
Sbjct: 70 NIPHLERPVIHDSCNILYPYCLAAEDIIGVEVPERAKYVRVIASELNKCIYIQYWLAIYG 129
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+ +G T +W +RE L+ E+ +G+R+ AYF PGGV D+P + + F
Sbjct: 130 IFLGHSTMFMWPAGDRELLIDLMEKLTGARVTHAYFVPGGVRNDLPANFEDVCLRQVNYF 189
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ + +D+ N I K R V G + +DA +G +G ++R SG +DLRK +PY+ Y
Sbjct: 190 EKRIKEYADIFYDNPILKARTVGTGVLSRQDAVRFGTTGSVLRASGVDFDLRKREPYDAY 249
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
E+DF+ P+ K GD Y R V ++M ES +IIR ++++ KV +PK
Sbjct: 250 EEMDFETPVLKEGDSYARSKVPWLDMMESCRIIRDALSKMPKSGKVRTKLKPNPKG---- 305
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+P EVY VE+ +G G Y++SD +PYR K+ P
Sbjct: 306 ----------------------KLPHEEVYRRVESGRGSLGCYIVSDRKPEPYRIKLSVP 343
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +L + L +G +L ++ A+ SL+ E DR
Sbjct: 344 SFRNLICLPNLLRGEKLGNMPAVYWSLNYWPVEADR 379
>gi|147919460|ref|YP_686800.1| hydrogenase, large subunit-like protein (HycE-like) [uncultured
methanogenic archaeon RC-I]
gi|110622196|emb|CAJ37474.1| hydrogenase, large subunit-like protein (HycE-like) [uncultured
methanogenic archaeon RC-I]
Length = 524
Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats.
Identities = 109/388 (28%), Positives = 173/388 (44%), Gaps = 33/388 (8%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
F I GP H + GE V ++ +G +H+G EK+ E+ T+ + V +R
Sbjct: 168 FEIPVGPVHAGVIEPGHFRFSVAGEPVLMLEIRMGYVHKGIEKISESMTYDKGVFLSERT 227
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
M AY AVE+L GIE+P R + IR ++ E+ RI +HL +V ++D
Sbjct: 228 SGDNGMAHSTAYCQAVEQLAGIEVPDRARYIRTVFLEMERIYNHLGDVGGISLDTAYNVG 287
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
+ RE+++ E +GSR+ + + GGV QD+ E +E I D
Sbjct: 288 AQHAYILRERMLQLNECITGSRLLRSVNKIGGVRQDLTREDIEKIRTAIIKAKLDFKDFV 347
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
DL+ R G + LE A G R SG + D+R+ PY YS+L+F +
Sbjct: 348 DLVNRQTSILDRTETTGKLPLEAAVSLNIVGPGARASGVSRDVRRDHPYAAYSDLNFAVH 407
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
I K GD R V++ E+ ES+ II Q ++RL
Sbjct: 408 IRKEGDVNARMQVKIGEIYESMSIIEQALDRLPAG------------------------- 442
Query: 309 ESLIHHFKLYTEGYHVPVGE-VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
K+ ++P G + VEAP+GE +++S ++P+R KIR P + + A
Sbjct: 443 -------KIRAATGNIPQGRVGISLVEAPRGELLHWILSGENDRPFRHKIRDPSFCNWLA 495
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVD 395
ME G+ + D + S ++ + D
Sbjct: 496 MEIATPGNIVPDFPLVNKSFNLSYSGND 523
>gi|255322775|ref|ZP_05363917.1| hydrogenase-4 component G [Campylobacter showae RM3277]
gi|255300117|gb|EET79392.1| hydrogenase-4 component G [Campylobacter showae RM3277]
Length = 578
Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats.
Identities = 91/387 (23%), Positives = 163/387 (42%), Gaps = 31/387 (8%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVPYFDRLD 69
+ GP H + L DG+ + D + HRG EKL E + + Q +R+
Sbjct: 188 VPLGPLHVTSDEPGHFRLFCDGDEIIDADYRLFYQHRGMEKLAENRMNYDQMGYLAERVC 247
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ A A E+ + +EIP+R Q IRV+ EI R+ SHLLN+ G
Sbjct: 248 GICGYAHAIACIEAAERAIKLEIPLRAQAIRVICLEIERLHSHLLNIGLACEVTGNYNAF 307
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ F RE M + +G R GG+ +D+ + + + +I D
Sbjct: 308 MHIFRVREYSMELAQLVTGGRKTYGNVIMGGLRRDMTDNEIRQGLAIINKLDVQITEIWD 367
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ ++ R +G + + A + G +RGSG D R PY+ + ++F++ +
Sbjct: 368 AVMEDKRQLGRWKGVGVLDKQVARDFSPVGPNMRGSGFKRDNRYDHPYDFFKHIEFEVAV 427
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD + R +VR E+++S+ IIRQC + P+ ++ P+ +
Sbjct: 428 EHGGDVFSREVVRYKELKQSIHIIRQCFELM----PQTPIMIDPVTMIKPENFALGHD-- 481
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
EAP+GE +++ K +R + RA Y + ++
Sbjct: 482 ------------------------EAPRGENVHWIMQGSAQKVFRWRCRAATYNNWPSLR 517
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +G+ ++D + I+ SLD + +R
Sbjct: 518 YQFRGNNISDAALIVCSLDPCYSCTER 544
>gi|288961345|ref|YP_003451684.1| NADH dehydrogenase I chain D [Azospirillum sp. B510]
gi|288913653|dbj|BAI75140.1| NADH dehydrogenase I chain D [Azospirillum sp. B510]
Length = 359
Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats.
Identities = 113/389 (29%), Positives = 176/389 (45%), Gaps = 31/389 (7%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
++ GP HPA ++ ++ GE+++ +G RG E L + + +++ + +R
Sbjct: 2 PYSFPLGPYHPALEEPFKVKVQCRGEVIDSATVEVGFSFRGIELLAQKRNWVEVITLIER 61
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ + + +A E + GIE+P R IR + +E+ R+ SHLL A D+G +
Sbjct: 62 VCGICSNTHAMTFCMAAETIAGIEVPRRAAHIRTIIAELERLHSHLLWAGVGAEDIGFHS 121
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
+ F RE +M E SG+R++ GGVH+DIP + + +
Sbjct: 122 LFMEVFTLRELVMDTLEAISGNRVNYGMNCIGGVHRDIPDP-KQHLPALDRLATGLAEIV 180
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
TGN R +G + E A W G + R SG D+RK QPY Y+ L F
Sbjct: 181 IPTFTGNPTALARTRGVGRLSREQAVEWAVVGPVARASGLDIDVRKDQPYLSYAGLGFAS 240
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
+ GD R +VR +EM ES+++IR+ + L R+
Sbjct: 241 VMRPEGDVLARVVVRALEMVESIRLIREALLSLPAGP--------------------LRA 280
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
E L +PVGE EAP+GE Y+ S+GG P R KIR P + ++ A
Sbjct: 281 TEGL----------PEIPVGEASIRTEAPRGEAFYYVASEGGPTPSRVKIRTPSFVNIPA 330
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+E + G LAD+S I S+D DR
Sbjct: 331 IEAMVVGQPLADLSIIQASVDPCISCTDR 359
>gi|256827155|ref|YP_003151114.1| ech hydrogenase subunit E [Cryptobacterium curtum DSM 15641]
gi|256583298|gb|ACU94432.1| ech hydrogenase subunit E [Cryptobacterium curtum DSM 15641]
Length = 362
Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats.
Identities = 108/392 (27%), Positives = 172/392 (43%), Gaps = 32/392 (8%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+S I FGPQHP L L L ++ E V P IG +HRG E+L ETK + Q +
Sbjct: 2 GKSTVIPFGPQHPVLPEPLHLDLVVEDETVVEAIPQIGFIHRGLERLTETKDYNQFIYVA 61
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
+R+ + YA +E L+GIE+P R Q +RV+ E+ RI SH+L + A G
Sbjct: 62 ERICGICAFGHSMGYAETIEHLMGIEVPPRAQYLRVIMHEMSRIHSHVLWLGLAADAFGF 121
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ + + RE+++ +E +G R+ + GG+ +D +++ + + +
Sbjct: 122 ESLFMHCWRLRERVLDLFEAMTGGRVIFSANLVGGMVRDQDAQILATVKERLEGIKADYQ 181
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
ISD + K R V +G + EDA W +G R S D R + +F
Sbjct: 182 QISDTFLKDSSVKGRLVGVGYISPEDAAAWSMTGPFARASAVNNDARCKGSAAYAALPNF 241
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ + GDCY R VR+ E+ +S+ II Q ++ + + V S
Sbjct: 242 EPILSHDGDCYARVEVRIREVLQSIDIICQLIDTIPAGEVLTKVKGS------------- 288
Query: 306 RSMESLIHHFKLYTEGYHVPVG-EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
G + A+E P+GE Y +G R ++R P A+
Sbjct: 289 ------------------PAAGSQACHALEQPRGECYYYASGNGTKFLSRMRMRTPTSAN 330
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
L M KG LADV+ I+ ++D +R
Sbjct: 331 LAGMAMALKGCDLADVNMIVLTIDPCISCSER 362
>gi|11499418|ref|NP_070657.1| NADH dehydrogenase subunit D [Archaeoglobus fulgidus DSM 4304]
gi|2648715|gb|AAB89420.1| F420H2:quinone oxidoreductase, 45 kDa subunit (nuoD) [Archaeoglobus
fulgidus DSM 4304]
Length = 413
Score = 299 bits (767), Expect = 4e-79, Method: Composition-based stats.
Identities = 120/396 (30%), Positives = 198/396 (50%), Gaps = 16/396 (4%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
D +S F + GPQHP + G +RLI+ + G+I++ V P G +HR EKL E + ++Q
Sbjct: 33 DTYRSDDFLVLVGPQHPGS-GHMRLIVRVRGDIIQEVIPDPGYVHRSMEKLAENRLYIQN 91
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+P +R + N Y A+E+ L IE+P R + +R + +E+GR+ +HL + A+
Sbjct: 92 IPLVERPAIMDAPNFNLGYVRAIEEALDIEVPERAKFLRTMLAELGRVGTHLYDAAILAV 151
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
+G T ++ F RE + R +G+R +++ PGGV +D ++ I +
Sbjct: 152 FLGHTTGFMYPFGLRELICEALVRLTGARFTSSFIIPGGVRRDADDATLKWIYDMTLAME 211
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
L + N R ++G + E+A +G G +R SG +D+RK +PYE Y
Sbjct: 212 RRLKSFERIFINNPTVIARLQDVGVLSKEEAIKYGVVGPFLRASGVEYDVRKVEPYEAYD 271
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+L +++P+ GD Y R+LVR+ E+ +S+ IIRQC+ + +
Sbjct: 272 DLTWEMPVSDAGDGYARFLVRVNEVGQSLSIIRQCIKEMPEGRVIS-------------- 317
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG-GNKPYRCKIRAP 360
+ + + + F +P GE E +G +ISDG N PYR +I +P
Sbjct: 318 EQVAENEKDIRGSFFDSLSNIVLPSGEYTTLTEGARGTIIYSIISDGESNVPYRLRIVSP 377
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ +L+ KG +LAD+ AI GS E DR
Sbjct: 378 GWLYLRGFMESMKGERLADLQAIYGSFGYFPPEADR 413
>gi|157165393|ref|YP_001466171.1| DNA-3-methyladenine glycosylase I [Campylobacter concisus 13826]
gi|112801569|gb|EAT98913.1| hydrogenase-4 component G [Campylobacter concisus 13826]
Length = 578
Score = 299 bits (766), Expect = 5e-79, Method: Composition-based stats.
Identities = 92/387 (23%), Positives = 164/387 (42%), Gaps = 31/387 (8%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVPYFDRLD 69
+ GP H + L DG+ + D + HRG EKL E + + Q +R+
Sbjct: 188 VPLGPLHVTSDEPGHFRLFCDGDEIIDADYRLFYQHRGMEKLAENRMNYDQMGYLAERVC 247
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ A A EK + +EIP+R Q IRV+ EI R+ SHLLN+ G
Sbjct: 248 GICGYAHAIACIEAAEKAIKLEIPLRAQAIRVICLEIERLHSHLLNIGLACEVTGNYNAF 307
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ F RE M + +G R GG+ +D+ ++ + +++I D
Sbjct: 308 MHIFRVREYSMELAQLVTGGRKTYGNVVMGGLRRDMTNHEIKKGLEIINKLDIQISEIWD 367
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ ++ R +G + + A + G +RGSG D R PY+ + +++F++ +
Sbjct: 368 AVLEDKRQIGRWKGVGILDRQIARDFSPVGPNMRGSGFKRDNRYDHPYDFFKQIEFEVAV 427
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
D + R +VR E++ S+ IIRQC + P+ ++ P+ +
Sbjct: 428 EHGCDVFAREMVRYKELKSSIHIIRQCFEMM----PQTPIMIDPVTMIKPENFALGHD-- 481
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
EAP+GE +++ K YR + RA Y + ++
Sbjct: 482 ------------------------EAPRGENVHWIMQGSAQKVYRWRCRAATYNNWPSLR 517
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +G+ ++D + I+ SLD + +R
Sbjct: 518 YQFRGNNISDAALIVCSLDPCYSCTER 544
>gi|332157676|ref|YP_004422955.1| NADH dehydrogenase subunit D [Pyrococcus sp. NA2]
gi|331033139|gb|AEC50951.1| NADH dehydrogenase subunit D [Pyrococcus sp. NA2]
Length = 391
Score = 298 bits (764), Expect = 8e-79, Method: Composition-based stats.
Identities = 134/394 (34%), Positives = 204/394 (51%), Gaps = 26/394 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ + FGPQH A +IL++DG V + + G LHRG EKL E + + +
Sbjct: 22 DKDTYELFFGPQHMAT-ENFSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIAL 80
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
R+ P E Y++AV++++G E+P R Q IR L E+ R+ ++L + + +G
Sbjct: 81 LLRICVPEPDVPEAIYSMAVDEIIGWEVPERAQWIRTLVLELARVSAYLFWIMGLSFKLG 140
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIP-PELVEDIGCWCDSFPSA 183
T W RE++M +E +G+R++ Y PGGV +DIP + + + + S
Sbjct: 141 VYTAGQWAAAYRERIMRIFEELTGARVYHIYTIPGGVRRDIPGDKWLRQVKDTVEYIKSK 200
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L D +L+ N I +R IG + + A G +G +R +G A+D+RK PY Y EL
Sbjct: 201 LPDFDNLVFENYITYRRMEGIGVMDKKFALSEGVTGPNLRATGVAYDVRKDDPYLLYPEL 260
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DF++P K GD R L+R E+ + + II Q + GP DP++ R
Sbjct: 261 DFEVPTLKEGDALARALIRRYELEQDLYIIEQLLEMGP---PSGPYKVEDPRLKNLPR-- 315
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ VP G+ +A VEA KG+FG Y++SDGGNKPYR IR P A
Sbjct: 316 ------------------FKVPPGDAFAHVEATKGDFGAYVVSDGGNKPYRVHIRGPSIA 357
Query: 364 H-LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H ++ +E L G ++ADV IL SLD ++DR
Sbjct: 358 HGIRVLEQLLVGARIADVPVILMSLDNCPPDIDR 391
>gi|255513405|gb|EET89671.1| NADH dehydrogenase (quinone) [Candidatus Micrarchaeum acidiphilum
ARMAN-2]
Length = 387
Score = 298 bits (764), Expect = 9e-79, Method: Composition-based stats.
Identities = 140/389 (35%), Positives = 211/389 (54%), Gaps = 28/389 (7%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
IN GP HP+ HGVLRL++++DG+ +E + HIG LHRG EKL+E + ++Q+ Y ++L
Sbjct: 26 MRINVGPIHPSTHGVLRLLVDVDGDTIENMTCHIGFLHRGVEKLMENRMYMQSPSYTEKL 85
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-ALT 127
DYVAP+ + Y VE L E+ + RV+ E RI SHL + D+G T
Sbjct: 86 DYVAPLGWDDLYVHTVELALQKEVKETAKYARVIIMEFQRIASHLFFIGALCNDIGQMFT 145
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
+W F ER+ ++ F E SGSRM R GG+ + +P + + + +
Sbjct: 146 MFMWAFRERDAVLKFLEDISGSRMFYVNMRVGGLMRPLPDDFYDRAYKLTEYIEYKVKGY 205
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
D++ N IF +R IGT+ ++A +G SG +R SG +D+RK PY Y L F +
Sbjct: 206 KDVIDDNSIFMERTKGIGTISKKEAIDFGLSGPNLRASGVEYDVRKEYPYYAYDRLKFKV 265
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
P GD Y RY +R E+ ES+KIIRQ ++++ N V V I P + D+
Sbjct: 266 PTSNAGDGYARYKMRYEEIFESIKIIRQALDKMPRDNDV--VGLPIKLIGPEAKPDI--- 320
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
+I+H +L P+GE +Y++ D KPYR ++R+P + L A
Sbjct: 321 ---VINHHEL------------------PRGEGIIYMVPD-KQKPYRIRLRSPVFISLSA 358
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+E +CKG + AD+ +I G+LD+V EVDR
Sbjct: 359 LEHICKGAKFADLFSIAGTLDVVMAEVDR 387
>gi|257064038|ref|YP_003143710.1| ech hydrogenase subunit E [Slackia heliotrinireducens DSM 20476]
gi|256791691|gb|ACV22361.1| ech hydrogenase subunit E [Slackia heliotrinireducens DSM 20476]
Length = 362
Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats.
Identities = 107/391 (27%), Positives = 167/391 (42%), Gaps = 30/391 (7%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
++ I FGPQHP L L L + E V V P IG +HRG EKL+E K Q +
Sbjct: 2 GKATVIPFGPQHPVLPEPLHLDLVVQDEKVIEVIPQIGFIHRGLEKLVEKKDIHQFIYVA 61
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
+R+ + YA VEKL+G+E+P R + +RV+ E+ RI SHLL + A G
Sbjct: 62 ERICGICSFGHSLGYAETVEKLMGVEVPRRAEYLRVILHELSRIHSHLLWLGLAADAFGF 121
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ + RE+++ +E +G R+ + + GGV +DI E ++ I D S
Sbjct: 122 EALFMHSWRIRERVLDIFEATTGGRVILSAVQIGGVIRDIDDEELKQISATLDGMRSEYA 181
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
++ + + R VN+G + A G R S +D R +F
Sbjct: 182 ELMATFLNDTSVRSRLVNVGRLTQTQAEDLCMVGPFARASNVKFDCRMLGNGAYGELENF 241
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ GDCY R VR E+ +S+ II++ + ++ K+ PP A
Sbjct: 242 QPILDDEGDCYARVRVRCKEVIQSIDIIQELIAKIPHDGIG-----ERSKLTPPDGAQAA 296
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
+ E P+GE Y +G R ++R P +L
Sbjct: 297 NVL-------------------------EQPRGECYYYARGNGSKNLERMRMRTPTSQNL 331
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ C+G +LADV IL ++D +R
Sbjct: 332 AGLVAACEGAELADVPNILLTIDPCISCTER 362
>gi|120602012|ref|YP_966412.1| NADH dehydrogenase (ubiquinone) [Desulfovibrio vulgaris DP4]
gi|120562241|gb|ABM27985.1| NADH dehydrogenase (ubiquinone) [Desulfovibrio vulgaris DP4]
Length = 366
Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats.
Identities = 116/386 (30%), Positives = 172/386 (44%), Gaps = 32/386 (8%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
+ GP H A + L++DGEIV V+ G +HRG E L + Q + +R+
Sbjct: 13 LPVGPLHVALEEPMYFKLDVDGEIVRNVEITAGHVHRGMEALAMRRNLFQNIVLTERVCS 72
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ + Y +AVE L GIE+P R +RV+ EI R SHL NV A +G + +
Sbjct: 73 LCSNSHPFTYCMAVEHLAGIEVPARANHLRVVAEEIKRTASHLFNVAILAHIIGFKSLFM 132
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
E RE + E G+RM A GGV D+ EL+ + D +I +
Sbjct: 133 HVMEVREIMQDIKETVYGNRMDLAANCIGGVKYDVDAELLAMLLAGLDKVERNAREIYRI 192
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
+ + R IG + ++A +G G + RGSG A D+R+ PY Y +L FD+
Sbjct: 193 YASDPMVTGRTTGIGVLPPDEARRFGVVGPVARGSGLAVDVRRDVPYAAYPQLSFDVITE 252
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
+ D R LVR+ E+ ES+ IIRQCV L +
Sbjct: 253 EGCDVRARALVRLREVFESISIIRQCVATLPEGAMTVIM--------------------- 291
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
+P G+ A EAP+GE YL +DG + P R K R P Y + A+
Sbjct: 292 -----------PEIPAGQSVARSEAPRGELMYYLRTDGTDIPNRLKWRVPSYMNWDALGV 340
Query: 371 LCKGHQLADVSAILGSLDIVFGEVDR 396
+ + +AD+ I+ S+D +R
Sbjct: 341 MMRDANVADIPLIVNSIDPCISCTER 366
>gi|296272275|ref|YP_003654906.1| NADH dehydrogenase [Arcobacter nitrofigilis DSM 7299]
gi|296096450|gb|ADG92400.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Arcobacter
nitrofigilis DSM 7299]
Length = 579
Score = 298 bits (762), Expect = 1e-78, Method: Composition-based stats.
Identities = 97/387 (25%), Positives = 161/387 (41%), Gaps = 31/387 (8%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVPYFDRLD 69
+ GP H + L DG+ + D + HRG EKL E + + Q +R+
Sbjct: 189 VPLGPLHITSDEPGHFRLYCDGDTIIDADYRLFYQHRGMEKLAENRMNYDQMGYLAERVC 248
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ A EK +G+EIP+R Q +RV+ EI R+ SHLLN+ G +
Sbjct: 249 GICGYAHAIGCIEAAEKAIGLEIPLRAQAMRVICLEIERLHSHLLNIGLACEVTGNVNAF 308
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ F RE M + +G R GG+ +D+ ++ + ++ D
Sbjct: 309 MHIFRIREFSMELAQLVTGGRKTYGNVVMGGLRRDMTGTEIKKSLELLEIIEVQTKEVWD 368
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ ++ +R +G + + A + G IRG G D R PY+ ++LDF+IP
Sbjct: 369 AVMDDKNQVERWKGVGLLDKQVARDFSPVGPNIRGCGFKRDSRYDHPYDFLTQLDFEIPT 428
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
D + R VR E+ ESV IIRQC + G ++ P
Sbjct: 429 EDGCDVFARETVRYRELLESVSIIRQCFEMMPGGLT----------VIKP---------- 468
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
+ P EAP+GE +++ K +R + RA Y + ++
Sbjct: 469 ----------QTMIKPGAYAIGNDEAPRGENIHWIMHGNAQKVFRWRCRAATYNNWTSLR 518
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +G+ +AD + I+ SLD + +R
Sbjct: 519 YQFRGNTIADAALIVCSLDPCYSCTER 545
>gi|18977814|ref|NP_579171.1| NADH dehydrogenase subunit D [Pyrococcus furiosus DSM 3638]
gi|18893565|gb|AAL81566.1| NADH dehydrogenase subunit [Pyrococcus furiosus DSM 3638]
Length = 391
Score = 298 bits (762), Expect = 1e-78, Method: Composition-based stats.
Identities = 139/394 (35%), Positives = 207/394 (52%), Gaps = 26/394 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ + FGPQH A +IL++DG V + + G LHRG EKL E + + +
Sbjct: 22 DKDTYELFFGPQHMAT-ENFSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIAL 80
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
R+ P E Y++AV++++G E+P R Q IR L E+ R+ ++L + + +G
Sbjct: 81 LLRICVPEPDVPEAIYSMAVDEIIGWEVPERAQWIRTLVLEMARVTAYLFWIMGLSFKLG 140
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIP-PELVEDIGCWCDSFPSA 183
T W RE+ M +E+ +G+R++ Y PGGV +DIP + + + +
Sbjct: 141 VYTAGQWAAAYRERFMALFEQLTGARVYHIYTIPGGVRRDIPGDKWLRQVRDTVEYLKDK 200
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L D ++L N I +R IG + + A G +G +R +G A+D+RKS PY Y EL
Sbjct: 201 LKDFDNVLFENYITYKRLEGIGVMDKKFALEEGVTGPNLRATGVAYDVRKSDPYLLYPEL 260
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DF+IP+ K GD R LVR E+ + + II Q ++ GP DPK+ R
Sbjct: 261 DFEIPVLKEGDALARVLVRRYELEQDLYIIEQLLDMGP---PSGPYKVQDPKLKNLPR-- 315
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ VP GE +A VEA KG+FG Y++SDGG+KPYR IR P A
Sbjct: 316 ------------------FKVPPGEAFAHVEATKGDFGAYVVSDGGHKPYRVHIRGPSIA 357
Query: 364 H-LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H ++ +E L G +LADV AIL SLD ++DR
Sbjct: 358 HGVRVLEQLLVGARLADVPAILMSLDNCPPDIDR 391
>gi|294102251|ref|YP_003554109.1| NADH dehydrogenase (quinone) [Aminobacterium colombiense DSM 12261]
gi|293617231|gb|ADE57385.1| NADH dehydrogenase (quinone) [Aminobacterium colombiense DSM 12261]
Length = 412
Score = 298 bits (762), Expect = 1e-78, Method: Composition-based stats.
Identities = 104/403 (25%), Positives = 183/403 (45%), Gaps = 31/403 (7%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M K++++ + GP H + L+LDGE + G +HRG E + + +Q
Sbjct: 1 MASGKTQTYKVPIGPVHVGLKEPITAWLDLDGEKIVDARVRPGAIHRGIEFMARERNPIQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ +R+ + + A+ AVE I++P R Q IR L E+ R+ SH L
Sbjct: 61 IIYLAERICGICSFSHITAFLRAVEDAAQIQVPPRAQYIRALVLELERVHSHALWAGVAC 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+G + G REK+M E +G+R++ GGV D+ PE V I +
Sbjct: 121 YSIGFDSAFHLGMVLREKVMDVLESYTGNRVNYGVGTVGGVRWDLTPETVRVIKEMIQFY 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L D++T + + R N+G + E+A + G R SG DLR S PYE Y
Sbjct: 181 RDELGAFYDVVTEDPVAHARMRNVGILTYEEAMRYCALGPTARASGVRCDLRWSSPYEAY 240
Query: 241 SELDFDIPIGK------HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDP 294
++LD + + +GD +DR+LVR++E+ +S+ I+ + + L +
Sbjct: 241 ADLDVKPVVPQDYFGKAYGDVFDRFLVRVLELYQSLDILEKIIEGLPEGDI--------- 291
Query: 295 KIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGN-KPY 353
+ + +++ GE ++++EAP+G+ + GG Y
Sbjct: 292 -VFEKSLVKVLNILKAA--------------DGEGWSSIEAPRGDDTHVVQLKGGQENVY 336
Query: 354 RCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
K+RAP Y++ + + + ++LAD I+ S+D ++R
Sbjct: 337 WWKVRAPTYSNAVSWPIMFRNNELADAPLIINSIDPCISCMER 379
>gi|242399277|ref|YP_002994701.1| Membrane-bound hydrogenase MBH 1, subunit Mbh1L (NiFe hydrogenase
catalytic subunit) [Thermococcus sibiricus MM 739]
gi|242265670|gb|ACS90352.1| Membrane-bound hydrogenase MBH 1, subunit Mbh1L (NiFe hydrogenase
catalytic subunit) [Thermococcus sibiricus MM 739]
Length = 430
Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats.
Identities = 105/394 (26%), Positives = 173/394 (43%), Gaps = 32/394 (8%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
I GP HPA + I+ LDGE + VD +G RG E + + ++Q + +R+
Sbjct: 11 IPIGPIHPALEEPEKFIITLDGERIIHVDIKLGYNLRGLEWIAMRRNYIQLLYLVERICG 70
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ + H Y AVE++ GIE+P R + IR + E+ RI SHLLN+ +G T
Sbjct: 71 ICSFSHNHTYTRAVEEMAGIEVPERAEYIRAIIGELERIHSHLLNLGVVGHAIGYDTVLH 130
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN-DISD 189
+ RE++M E G+R++ A GGV +DI + I + + + +
Sbjct: 131 LSWLARERVMDILEAIGGNRVNYAMNTIGGVRRDIEEKHKRMILDMIKHYREEVMPKVEE 190
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + + R + G + A + G RGSG D+R ++ Y EL
Sbjct: 191 IFLYDPTVEARLRDAGVIPKRIALEYSAQGPTARGSGIKKDVRYNERLGVYPELGIKPIT 250
Query: 250 GK------HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
K GD +DR +VR+ E+ +S++II + +++ S + + K+A+
Sbjct: 251 PKEFTGVIKGDVFDRMVVRVGELWQSMEIIEKAFDQMPEGKIK-TFSKDNVTLTKLKKAE 309
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISD-GGNKPYRCKIRAPGY 362
G EAP+GE Y+ ++ G + P + K R P +
Sbjct: 310 -----------------------GAGIGRYEAPRGETIHYVRANPGTDTPAKWKAREPTF 346
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L A+ G QLADV + S+D DR
Sbjct: 347 PNLFAVARALVGEQLADVPVAIASIDPCLSCTDR 380
>gi|147919861|ref|YP_686388.1| ech hydrogenase, subunit E [uncultured methanogenic archaeon RC-I]
gi|110621784|emb|CAJ37062.1| Ech hydrogenase, subunit E [uncultured methanogenic archaeon RC-I]
Length = 359
Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats.
Identities = 116/387 (29%), Positives = 184/387 (47%), Gaps = 31/387 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
T+ FGPQHP +RL L LDGE+V+ V+ G +HRG EK E + +A +R+
Sbjct: 4 TVQFGPQHPVWIEPIRLKLALDGELVKDVELEAGYVHRGLEKKFEW-DYNKAAYLAERVC 62
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + + LAVE + +EIP R +IR + E+ R+ SHLL + +G
Sbjct: 63 GICTQHHSTCFCLAVESTMKLEIPRRAAVIRNIMLELERLHSHLLAIGLTLEAIGFENLF 122
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ F RE ++ +ER +G+R+ GGV ++I PE+ ++I +CD+ D+ D
Sbjct: 123 MLCFRNREIVLDVFERTTGNRVLHGINLVGGVTRNIGPEMAQEIMDFCDTIEKRCRDLED 182
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
++ +R K R +G + + A + G + RGSG +D+R PY Y EL +
Sbjct: 183 MIVHSRTIKDRMKGVGILSKQTALDYSVVGPIARGSGIPYDVRIDAPYLLYGELKMKHVV 242
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
+ D + R +VR+ E+ +S+ +IRQ V L G
Sbjct: 243 EEGCDVWARSIVRVRELFQSIDLIRQLVPMLEGLP------------------------- 277
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
+ + +P G+ +A VE P+GE ++ + R K+R YA+ A+
Sbjct: 278 -----DDILAKSKTMPDGDGFARVEPPRGELFYFVRGKKSKELDRVKVRTSTYANGPALI 332
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVDR 396
+ KG QLADV I S D G DR
Sbjct: 333 PVIKGCQLADVGPITISYDPCIGCFDR 359
>gi|154175503|ref|YP_001407623.1| phage integrase family site specific recombinase [Campylobacter
curvus 525.92]
gi|112802279|gb|EAT99623.1| site-specific recombinase, phage integrase family [Campylobacter
curvus 525.92]
Length = 578
Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats.
Identities = 94/387 (24%), Positives = 160/387 (41%), Gaps = 31/387 (8%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVPYFDRLD 69
+ GP H + L DG+ + D + HRG EKL E + + Q +R+
Sbjct: 188 VPLGPLHVTSDEPGHFRLFCDGDEIIDADYRLFYQHRGMEKLAENRMNYDQMGYLAERVC 247
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ A A EK + +EIP+R Q IRV+ EI R+ SHLLN+ G
Sbjct: 248 GICGYAHAIACIEAAEKAIKLEIPLRAQAIRVICLEIERLHSHLLNIGLACEVTGNYNAF 307
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ F RE M + +G R GG+ +D+ ++ + +++I D
Sbjct: 308 MHIFRVREYSMELAQLVTGGRKTYGNVIMGGLRRDMTNHEIKKGIEIINKLDVQISEIWD 367
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ ++ R +G + A + G +RGSG D R PY+ + +++F++ +
Sbjct: 368 AVMEDKRQIGRWRGVGILDRNIARDFSPVGPNMRGSGFKRDNRYDHPYDFFKQIEFEVAV 427
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
D R +VR E+++S+ IIRQC + DPK
Sbjct: 428 EHGCDVLSREIVRYKELKQSIHIIRQCFEMMPQTPI-----MIDPK-------------- 468
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
P EAP+GE +++ K YR + RA Y + ++
Sbjct: 469 -----------TMIKPENFALGHDEAPRGENVHWIMQGSAQKVYRWRCRAATYNNWPSLR 517
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +G+ ++D + I+ SLD + +R
Sbjct: 518 YQFRGNNISDAALIVCSLDPCYSCTER 544
>gi|153874572|ref|ZP_02002740.1| NADH-ubiquinone oxidoreductase subunit [Beggiatoa sp. PS]
gi|152068964|gb|EDN67260.1| NADH-ubiquinone oxidoreductase subunit [Beggiatoa sp. PS]
Length = 380
Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats.
Identities = 139/392 (35%), Positives = 199/392 (50%), Gaps = 26/392 (6%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
S + + FGP HP G L + L G+ V V G LHRG EK++E + ++Q V
Sbjct: 14 SHEYELYFGPNHPGIEGNYALKVRLSGDEVVGVKADAGYLHRGFEKIMEERLWIQNVALV 73
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
R+ P E YA AVE L G+E+P R Q IRV+ E+ RI +HL + G
Sbjct: 74 PRICVPDPPPMEETYARAVEMLGGLEVPERAQWIRVMMLEMSRIAAHLFIAGGTSATTGQ 133
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ WG +R+ ++ +E +G+R++ + PGGV +DIP ++ +G D + L
Sbjct: 134 YSNMFWGIADRDLILDLFEELTGARIYNMFITPGGVRRDIPDGFLDRLGQVLDFLEARLP 193
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ DL N +F +R IG + E A WG +G +R G +D+R++ PY Y +LDF
Sbjct: 194 EYDDLFFDNPVFHRRAEGIGKMTQEQALAWGVTGPNLRACGLPFDVRRNDPYLVYEQLDF 253
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
DIP GD DR VR E+ ES KI+RQ + RL GP+ P +
Sbjct: 254 DIPTETGGDVLDRIRVRRSEIIESTKILRQVIQRLPH--VKGPIRCHLPNPLA------- 304
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
++VP G+ YA EA KGE G Y +S GG KP+R +R P H
Sbjct: 305 ----------------WNVPEGDAYARTEAQKGELGFYAVSTGGTKPWRVHVRGPSCMHA 348
Query: 366 -QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Q +E LC G ++ D++ I+ SLD EVDR
Sbjct: 349 VQVLEKLCLGARIEDIAMIMFSLDACPPEVDR 380
>gi|167044396|gb|ABZ09073.1| putative Respiratory-chain NADH dehydrogenase, 49 Kd subunit
[uncultured marine crenarchaeote HF4000_APKG6D3]
Length = 384
Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats.
Identities = 125/396 (31%), Positives = 200/396 (50%), Gaps = 29/396 (7%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
++K R T+N GPQHP + G +R+IL++DG+ + DP G +HRG EK+ E + ++
Sbjct: 18 LEKVDDRIMTLNVGPQHPGS-GHMRIILKVDGDYIVHCDPDPGYVHRGEEKMAEYRNYIT 76
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+P+ +R N + Y L VE+LLG+E+P R + IRV+ +E+ R + +
Sbjct: 77 NIPHLERPVIHDSCNILYPYCLGVEELLGLEVPERAKYIRVIAAELNRCVYTQYWLAIYG 136
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+ +G T +W +RE ++ ++ +G+R+ +YF PGGV DIPP + + F
Sbjct: 137 IFLGHSTMFMWPMGDRELVIDLLDKMTGARVTHSYFVPGGVRNDIPPNFEDVCLRQVNYF 196
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L + +D+ N I R + G + EDA G +G ++R SG +D+RK +PY+ Y
Sbjct: 197 EKRLKEYADMFYDNPILISRTKDTGILSREDAIKLGTTGSVLRASGVDFDIRKKEPYDVY 256
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
ELDF + K GD Y R + ++M ES +IIR + ++ V +PK
Sbjct: 257 EELDFQTNVLKEGDSYARSKIPWLDMFESCRIIRDALKKMPKSGSVRVKLKPNPKGG--- 313
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
EVY VE+ +G G+++IS G +PYR KI
Sbjct: 314 -------------------------DTEVYRRVESGRGSLGMHIISRGKPQPYRLKISVG 348
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +L AM L G L ++ A+ SL+ E DR
Sbjct: 349 SFRNLIAMPHLLTGEMLGNMPAVYWSLNYWPVEADR 384
>gi|55378738|ref|YP_136588.1| NADH dehydrogenase I chain C D [Haloarcula marismortui ATCC 43049]
gi|55231463|gb|AAV46882.1| NADH dehydrogenase I chain C D [Haloarcula marismortui ATCC 43049]
Length = 545
Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats.
Identities = 152/398 (38%), Positives = 207/398 (52%), Gaps = 32/398 (8%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFL-QAVPYF 65
+ IN GP HP+ HGVL L ++LDGE V VDP IG +HR E++ + T+ Q +PY
Sbjct: 172 ETMHINMGPHHPSTHGVLHLNVQLDGEQVAAVDPDIGYIHRCEEQMCQQGTYRHQIMPYP 231
Query: 66 DRLD-YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV- 123
DR D A + E AYA A E L IE+P Q+IR + E+ RILSH+L V T A+DV
Sbjct: 232 DRWDWGGAGLLNEWAYARAAEALADIEVPAYAQVIRTMGGELSRILSHMLAVATYALDVV 291
Query: 124 -GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP---ELVEDIGCWCDS 179
WG +RE + E +G R+ Y R GGV D+P E I + D
Sbjct: 292 GEFTATFQWGVRDRELVQDILEDLTGQRLMFNYLRLGGVAWDLPEPREAFFEKIRAFLDD 351
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
P L + D+LT N I + R ++ G + E A +G +G + R SG +DLR+ PY
Sbjct: 352 LPHKLTEYHDMLTSNEILQLRTIDTGHLSAETAKAYGCTGPVARASGVDYDLRRDDPYGY 411
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y ELD+ + + GD + R LVR+ E+ ES KII QCV+ L
Sbjct: 412 YDELDWSVVTEQGGDNFSRLLVRLREVEESAKIIGQCVDLL------------------- 452
Query: 300 KRADMKRSMESLIHHFKLYTEGYHV-PVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
+ E P E+Y AVEA KGE G+Y+ SDG P R KIR
Sbjct: 453 -----EDWPEDDREIQANVPRTLRPDPDTEIYRAVEAAKGELGIYIRSDGTETPARFKIR 507
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
P ++H+QA+ + +G + D+ A +GSLD + GEVDR
Sbjct: 508 GPSFSHVQALSEMARGEYVPDLVATIGSLDTIMGEVDR 545
>gi|282165310|ref|YP_003357695.1| putative [NiFe]-hydrogenase large subunit [Methanocella paludicola
SANAE]
gi|282157624|dbj|BAI62712.1| putative [NiFe]-hydrogenase large subunit [Methanocella paludicola
SANAE]
Length = 530
Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats.
Identities = 113/386 (29%), Positives = 175/386 (45%), Gaps = 30/386 (7%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
I +GP HPA L + ++ E+V++VD +G HR KL+E + + + + +R+
Sbjct: 147 IPYGPYHPAFIESNFLKMSVEDEVVKKVDLKLGFNHRSVIKLMERRDYYKDIFLAERICG 206
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ ++A +VE + I+IP + +L R L E+ RI SHLL V G T +
Sbjct: 207 FCNSHHALSFARSVEDIASIDIPPKAKLARTLLCEMERIQSHLLAVGLIGDLTGFRTMLM 266
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
RE++ E SG R+ GG+ +DI P + I ++ + D
Sbjct: 267 HSLRVREEMQDSLEVVSGQRVTHGLITIGGIRRDITPAQADFILNKLRIMKKSVPEFFDQ 326
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
N + R N+G + LE++ G G RGSG D+RK+ PYE Y ++D+DI
Sbjct: 327 ALSNDVLVGRLENVGVLSLENSVKLGAVGPTARGSGLRIDVRKNSPYEAYEDVDWDIVTE 386
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
GD R V+M E+ S+ I QC ++ K P A
Sbjct: 387 NGGDSLARMKVKMREVLMSMHIAEQCCEKI--------------KTAPAGLA-------- 424
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
T+ +P GE + E P+GE ++ S+G N P +IR P + M
Sbjct: 425 --------TKVNELPCGEAISKSEPPRGELLYHVASNGTNTPDFVRIRVPTFLTAHIMLR 476
Query: 371 LCKGHQLADVSAILGSLDIVFGEVDR 396
L +G + DV AI+GS+D F DR
Sbjct: 477 LIQGGWVGDVPAIIGSIDPCFSCTDR 502
>gi|149194386|ref|ZP_01871483.1| Ech hydrogenase, subunit EchE, putative [Caminibacter
mediatlanticus TB-2]
gi|149135561|gb|EDM24040.1| Ech hydrogenase, subunit EchE, putative [Caminibacter
mediatlanticus TB-2]
Length = 363
Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats.
Identities = 107/392 (27%), Positives = 163/392 (41%), Gaps = 33/392 (8%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETK-TFLQAVPY 64
+ FG QH A + + + E++ VD +G +HRG EK TK F
Sbjct: 4 GNKVIVPFGSQHIALPEPVSFLFTTENEVITDVDVDVGYVHRGIEKAAITKFEFTNVAYL 63
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
R+ + Y +EKLLG E+P R + IR+L +E+ RI SH+L A VG
Sbjct: 64 LTRICGFCSITHASGYHHGIEKLLGAEVPKRAEYIRMLVTELDRIHSHILANGHVAEVVG 123
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
+ REK M E +G+R+ ++ GGV +D+ PE+VE++ +
Sbjct: 124 YENLFMQSVRYREKAMELLELITGNRIQYDIYKIGGVRKDLTPEIVEEVKKKLTKLKDEM 183
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
I D + F + I + + A + G + R SG D RK PY Y E+
Sbjct: 184 LKIYDFYDTDYTFGLKTKGISYISYDMAKEYNAVGPIARASGVDTDARKEFPYLPYDEIG 243
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F++ GD + R +VR E+ S+ + + V+ L V
Sbjct: 244 FEVQTMSEGDVWARNMVRQKEVLHSIDLCLRIVDNLPEGEISTKVKGR------------ 291
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GEVY +EAP+GE Y+ +G R +IR P YA+
Sbjct: 292 --------------------PKGEVYVRIEAPRGECFYYIKGNGTKILERVRIRVPTYAN 331
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + L G + +D AI+ S D R
Sbjct: 332 IPVLRELFVGEKYSDAQAIVLSFDPCMSCTAR 363
>gi|220905147|ref|YP_002480459.1| NADH dehydrogenase (quinone) [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219869446|gb|ACL49781.1| NADH dehydrogenase (quinone) [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 360
Score = 296 bits (757), Expect = 5e-78, Method: Composition-based stats.
Identities = 112/391 (28%), Positives = 181/391 (46%), Gaps = 32/391 (8%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ +FT+ GP H A + L +DGE V V+ G +HRG E + + ++ V
Sbjct: 2 TSTFTMPLGPVHVALEEPVYFHLTVDGETVRHVELTSGHVHRGMEAMATQRNLVKNVTLT 61
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
+R+ + + Y++ VE +LGI IP R + +RV+ EI RI SHL N QA +G
Sbjct: 62 ERVCSLCSNSHSFTYSMVVENVLGITIPDRARYLRVVAEEIKRIASHLFNTAIQAHIIGF 121
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ + E RE + E G+RM+ A GGV ++ EL++ + D ++
Sbjct: 122 KSLFMHVMEVREMMQDLKETVYGNRMNLAANCIGGVKYNVNAELLDYMRKMLDKVEPQVD 181
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+I ++ N + R +G + EDA G G + RGSG D+RK PY Y +++F
Sbjct: 182 EIREIYDTNSMVLARTKGLGVLPKEDAIRLGVVGPVARGSGLQLDVRKDSPYAAYPDVEF 241
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ + G + R +VRM E+ ES IIRQC+ R+ P+
Sbjct: 242 KTIVEQSGCIHARTMVRMHEVLESFSIIRQCIARMPEGEVTAPMRQ-------------- 287
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
+ E A EAP+GE Y+ ++ + P R K R P Y +
Sbjct: 288 ------------------IRTAEACARSEAPRGEVFYYIRTNETDIPSRLKWRVPSYMNW 329
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+A+ + + ++ADV+ I S+D +R
Sbjct: 330 EALGVMMRDCKVADVALITNSIDPCVSCTER 360
>gi|217077744|ref|YP_002335462.1| NADH dehydrogenase subunit D [Thermosipho africanus TCF52B]
gi|217037599|gb|ACJ76121.1| NADH-ubiquinone oxidoreductase 49 kda subunit [Thermosipho
africanus TCF52B]
Length = 367
Score = 296 bits (757), Expect = 5e-78, Method: Composition-based stats.
Identities = 128/390 (32%), Positives = 204/390 (52%), Gaps = 26/390 (6%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
+ FGP HP HG + L ++G+ V R P G LHRG EKL+E + + Q + R
Sbjct: 3 EVKLFFGPNHPGMHGNFSVHLYVEGDTVIRARPMPGFLHRGFEKLMERRLWYQNLALIPR 62
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ P E YALAVEKL +E+P R Q IR++ E+ RI HL+++ +G T
Sbjct: 63 ICVPEPDINEVVYALAVEKLANVEVPERAQWIRMIVLELARIAVHLMSMAGIGGPIGLYT 122
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
P WG +R++++ +E +G+R++ Y PGGV +D+ P++ + I + D S L +
Sbjct: 123 GPYWGVADRDRILDIFENLTGARIYHMYIIPGGVRKDMTPKVQDMIVKFLDYLESRLPEF 182
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+L+ NRI + R I + E A+ G +G+ +R +G +D+RK PY Y +++F++
Sbjct: 183 ENLIFKNRIVQTRLKGIALLDRETAFEMGVTGIGLRATGIPYDIRKIDPYLFYDKVEFEV 242
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
P GD + R ++ E+ +S++IIRQC+ ++ P+S +
Sbjct: 243 PTATEGDAFSRVYLKFKEIPQSIRIIRQCLEKMPEGKINVPISEGNALR----------- 291
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY-AHLQ 366
Y VP G VY +EA +GE+G Y++SDGG KPYR +R Y L
Sbjct: 292 --------------YRVPKGSVYVHIEASRGEYGYYVVSDGGEKPYRIVVRGASYPQTLY 337
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+E G ++ DV L ++ + EVDR
Sbjct: 338 GIEKYLPGTRIEDVPIWLDTMGVCSPEVDR 367
>gi|327400430|ref|YP_004341269.1| NADH dehydrogenase (quinone) [Archaeoglobus veneficus SNP6]
gi|327315938|gb|AEA46554.1| NADH dehydrogenase (quinone) [Archaeoglobus veneficus SNP6]
Length = 434
Score = 296 bits (757), Expect = 5e-78, Method: Composition-based stats.
Identities = 124/406 (30%), Positives = 198/406 (48%), Gaps = 12/406 (2%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ F I GPQH + G +R+I+ L G+++ P G +HRG EKL E + ++Q
Sbjct: 30 ETYNKDEFVIFVGPQHGGS-GHMRIIVRLKGDVITEAIPDPGYVHRGMEKLAENRLYIQN 88
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+P F+R + N Y A+E+ L IE+P R + IR + +E+ RI +HL + A+
Sbjct: 89 IPLFERPAIMDCANFNLGYVRAIEQALDIEVPERARYIRTILAELCRIGTHLYDAGILAV 148
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
+G T +W F RE + R G+R+ A+Y PGGV DI ++E I
Sbjct: 149 FLGHTTGFMWPFAMRELICEALMRICGARVTASYIIPGGVRNDIDRGVLEYIREVTFFIE 208
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
D + N + R ++ + ++A +G G +R SG +D+R +PYE Y
Sbjct: 209 KKARDFERVFIKNPVTIARMKDVAVISKKEAIKYGLVGPFLRASGVEYDVRAVEPYEAYD 268
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSAS--------- 292
EL +D+ +G GD Y R+LVR+ E+ +S+ IIRQ V+ L + +SA
Sbjct: 269 ELSWDVVVGDDGDSYSRFLVRVNEITQSINIIRQAVSALRSMPEGNVISADVSGKKKKAK 328
Query: 293 -DPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG-GN 350
+ + K+ ++ + F +P GE EA +G ++SDG
Sbjct: 329 AKEGEEGEEGKEEKKGLDDVKGAFFRLYGRLTLPSGEYTTLTEAARGTVLYTIVSDGQST 388
Query: 351 KPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
PYR ++ PG+ +L+ KG +LAD+ A+ GS E DR
Sbjct: 389 MPYRLRLVTPGWLYLKGFMESLKGCRLADLQAVYGSFGYFPPEADR 434
>gi|91202884|emb|CAJ72523.1| similar to membrane-bound [NiFe]-hydrogenase-3, large subunit
(chain E) [Candidatus Kuenenia stuttgartiensis]
Length = 531
Score = 295 bits (755), Expect = 8e-78, Method: Composition-based stats.
Identities = 104/388 (26%), Positives = 164/388 (42%), Gaps = 32/388 (8%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
F I GP H G+ + +D + H+GTEK+ ET + +A+ +R+
Sbjct: 174 FEIPVGPIHAGVIEPGHFRFSAVGDSIFYLDAKLFFTHKGTEKIFETMPYTKALFLAERI 233
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
V + Y A+EK+ IEIP R + IR + E+ RI +H+ +V L
Sbjct: 234 CGVCAASHATGYCQAIEKVAEIEIPPRARFIRTIVMELERIYNHIGDVGNICAGTAFLLG 293
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
GF RE L E +G+R GGV DI +L + I + D++
Sbjct: 294 IAHGFRIREYLQQLNETITGNRYLRGMLAIGGVRFDINDDLEKHILSLLNHVKKDFKDLT 353
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
++ + R G + E A G G GV R SG D R + PY Y E+DFDIP
Sbjct: 354 KMMFKSSSLLDRLETTGRLSEEIARGLGVVGVAARASGIVQDTRVNHPYAAYEEVDFDIP 413
Query: 249 I-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
+ GD R VR+ E+ +S+ II QC ++ P+
Sbjct: 414 VFHYEGDVLARIRVRVDEVYQSIYIIEQCFEKMRPGPLKTPIKEL--------------- 458
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
P + + VE+P+GE ++++ GNK +R K+R+P + + A
Sbjct: 459 ----------------PPYKQALSYVESPRGENIYWIMTAPGNKLFRYKVRSPSFCNWPA 502
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ F G+ + D I S ++ + D
Sbjct: 503 IPFAVPGNIVPDFPLINKSFELCYSCTD 530
>gi|219670290|ref|YP_002460725.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Desulfitobacterium
hafniense DCB-2]
gi|219540550|gb|ACL22289.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Desulfitobacterium
hafniense DCB-2]
Length = 551
Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats.
Identities = 88/395 (22%), Positives = 164/395 (41%), Gaps = 22/395 (5%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ + +F I GP H + GE V +D + H+G EKL+E K +
Sbjct: 179 EAEGEGTFEIPVGPVHAGIIEPGHFRFQTIGETVLHLDAQLFYTHKGIEKLLEGKDLEEG 238
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+ +R+ V ++ AY AVEKL G+E+P R + +E+ R+ +H+ ++
Sbjct: 239 LKIVERVCGVCAVSHALAYCEAVEKLKGMEVPRWILGWRTVLAELERLYNHVGDIGNLCA 298
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VG + +E+L + G R PGGV + E +
Sbjct: 299 GVGFALGNGNALQNKEQLQRLNHQLFGHRFLRGNITPGGVKKIPQREERAYLQRRLAELE 358
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+ L+ + F+QR + G + + A G +G R SG + D R+ + Y
Sbjct: 359 QDFEEWLPLILEHDGFRQRAITTGVLSKQSALDLGVTGPAARASGISQDWRERHAHLLYE 418
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
EL + + + GD + R +VR+ E+++S ++ + + +
Sbjct: 419 ELKVEPQVEQEGDVWSRLMVRVREVKQSFALLAELLEGDF------------------LQ 460
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+++ +L + Y + E+P+G ++L+ D K YRC+IR+
Sbjct: 461 DTVEQGGSALNGSEPFSPQPYSF----AWGCAESPRGTDVIWLMLDDEGKIYRCRIRSAS 516
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YA+ A+ +G+ + D I S ++ + DR
Sbjct: 517 YANWAAVPLAVQGNIVPDFPLINKSFELCYSCCDR 551
>gi|325294931|ref|YP_004281445.1| NADH dehydrogenase (quinone) [Desulfurobacterium thermolithotrophum
DSM 11699]
gi|325065379|gb|ADY73386.1| NADH dehydrogenase (quinone) [Desulfurobacterium thermolithotrophum
DSM 11699]
Length = 361
Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats.
Identities = 103/392 (26%), Positives = 165/392 (42%), Gaps = 33/392 (8%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETK-TFLQAVPY 64
TI FG QH A +R + + + E + V+ +G +HRG EK TK + Q
Sbjct: 2 GNRITIPFGSQHVALPEPIRFVFQTENEKIVDVEVDVGYVHRGIEKACMTKFKYTQVGYV 61
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
R+ + ++ Y AVE+L+ IE+P + +R+L SE+ R+ SHLL + A G
Sbjct: 62 VARVCGLCAISHTLGYVTAVERLMEIEVPKKALYLRLLVSELDRVHSHLLAMGHLAEVAG 121
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
+ F +RE +M E +G+R+ Y GGV++D+ E+ ++
Sbjct: 122 YENLFMHTFRDRELVMELQELVTGNRIQFDYATVGGVNRDLSLEVERELREKLKDLQERC 181
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ D+ + K R IG + E A G R SG A D R Y + E+
Sbjct: 182 LWLKDVFENDYTIKLRWKGIGVITPEMARELNVVGPPARASGLATDARNEFNYLPFKEVG 241
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
+ + K GD Y R +VR E S+++I ++ + + PV
Sbjct: 242 YKLITMKDGDIYARNMVRAEETLNSLEMIFNLLDGMPEGDIKVPVKG------------- 288
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
+P GE + +EAP+GE YL R +I+ P +++
Sbjct: 289 -------------------LPEGEAFVRIEAPRGELFYYLKGSKKLILDRLRIKVPTFSN 329
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ M+ L G ADV A + S D R
Sbjct: 330 IPVMKELFIGMDYADVPATVISFDPCLSCTAR 361
>gi|315231235|ref|YP_004071671.1| NADH-ubiquinone oxidoreductase subunit [Thermococcus barophilus MP]
gi|315184263|gb|ADT84448.1| NADH-ubiquinone oxidoreductase subunit [Thermococcus barophilus MP]
Length = 409
Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats.
Identities = 103/394 (26%), Positives = 183/394 (46%), Gaps = 30/394 (7%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
+ I GP HPA +R+ E++GE + RVD G HRG E + + +Q + +R+
Sbjct: 6 YYIPIGPIHPALKEPIRVEAEVEGEKIVRVDVKRGFAHRGIEYMGMKRNAIQTLYLSERI 65
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+ ++ +A+ + EK LGIE P R Q IR + +E+ RI SH+L + A ++G +
Sbjct: 66 CGICSISHPYAFVVTAEKALGIEAPPRAQYIRPIIAELERIHSHILWLGVIAHEMGFDSL 125
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
W ++ REK++ E +G+R++ + + GGV +D+ ++ I + +
Sbjct: 126 LFWTWKGREKVLDLLELLTGNRINYSVYMIGGVRRDLKESHIKAIKDAITYYWKFTEQMK 185
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
+++ + ++K R + + E A G + R +G D+R+ PY+ Y+++D
Sbjct: 186 EIILSDPVYKARTRGVAQLSKEMALKLNVVGPVARAAGIRMDIRQDMPYDAYADIDVRAV 245
Query: 249 I------GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+ GD YD +VR+ E+ +S+ II CV+ L +
Sbjct: 246 VPQDIVGEAKGDAYDITMVRIYEIEQSLDIIEYCVDNLPEGKILA--------------- 290
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
I ++ GE A EAP+GE YL DG + P K+ AP Y
Sbjct: 291 ---------IPNYPALLAKIRRTKGEAIGAHEAPRGEVVHYLKFDGRDGPSVWKVIAPSY 341
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ + L G ++AD+ ++ +D DR
Sbjct: 342 NNINSWAPLLLGAEVADIPIVVAYIDPCMCCNDR 375
>gi|326565200|gb|EGE15386.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Moraxella
catarrhalis 103P14B1]
Length = 522
Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats.
Identities = 124/332 (37%), Positives = 183/332 (55%), Gaps = 4/332 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+AHG RL+L+LDGE + P IG HRG EK+ E +T+ +P
Sbjct: 194 RDEDFMFLNIGPNHPSAHGAFRLVLQLDGEEIVDCIPDIGYHHRGAEKMAERQTWHSFIP 253
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ + E Y +AVEKL GI P R +IR++ SE RI ++LL T D
Sbjct: 254 YTDRIDYLGGVMNELPYIMAVEKLAGISTPERANIIRIMMSEFFRITNNLLYWGTFIQDA 313
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP + F +R+K E +G RMH A+FR GG D+P + + D P
Sbjct: 314 GGMTPVFYMFADRQKAYDVIEAVTGYRMHPAWFRIGGTAHDLPNGWQRLVREFLDWMPKR 373
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ N + K R N+ + A WG +G +R +G +DLRK++PY Y
Sbjct: 374 IDEYVKATMTNSVLKGRTQNVAQYDAKHALAWGVTGAGLRATGIEFDLRKARPYLGYENF 433
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FD+P+ +GD YDR LV++ E+R+S++II QC+N + G A P VPP +
Sbjct: 434 EFDVPVFYNGDAYDRCLVKIEEIRQSLRIIEQCLNNM----PSGAYKADHPLAVPPPKDK 489
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEA 335
+ +E+LI+HF + G +P GE VE
Sbjct: 490 TLKDIETLINHFVSVSWGPVMPAGESACMVEG 521
>gi|319790464|ref|YP_004152097.1| NADH dehydrogenase (quinone) [Thermovibrio ammonificans HB-1]
gi|317114966|gb|ADU97456.1| NADH dehydrogenase (quinone) [Thermovibrio ammonificans HB-1]
Length = 389
Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats.
Identities = 135/393 (34%), Positives = 197/393 (50%), Gaps = 33/393 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ + +N+G QHPA+ G +RL + +DG+ V +VDP IG + R EKL+E +T++ A+
Sbjct: 29 QEKLLQLNWGVQHPAS-GPMRLKVWVDGDEVVKVDPDIGYVLRLLEKLVEYRTWINAIVN 87
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
+R ++ Y++A EK+ G+E+P + +R + E GRI+SHL+ + + +G
Sbjct: 88 VERACFIDNFGTMTGYSIAAEKIAGVEVPKKADYVRTILCEGGRIVSHLIGLGSFIGVLG 147
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS-A 183
TP W REK + +E +G R+ + PGGV + + +E + D
Sbjct: 148 VHTPMQWALIAREKFLDAFEVYAGQRIATSSIVPGGVRYEPTGKFIEKMITAVDFLEKEF 207
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ N K R+ +G V E A G +G +R SG D+RK PY Y EL
Sbjct: 208 IPRFGEVFIDNPTLKIRSQGVGVVPREKAVELGLAGPALRASGIPSDIRKDYPYAAYGEL 267
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DF + + GDCY RYLV E+ ES KIIRQ + G P
Sbjct: 268 DFKVVTKEEGDCYARYLVIWEELIESAKIIRQAIEGF----PEGEYRTKFP--------- 314
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
VP GE Y VE +G FG +LISDGG PYR K+RAP +A
Sbjct: 315 ------------------VKVPAGEAYVNVEWARGCFGFHLISDGGTGPYRLKMRAPSFA 356
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L AM + K +LADV I SL I G++DR
Sbjct: 357 NLWAMPEMMKNVKLADVPVIFASLYICHGDIDR 389
>gi|303325629|ref|ZP_07356072.1| carbon monoxide-induced hydrogenase, large subunit [Desulfovibrio
sp. 3_1_syn3]
gi|302863545|gb|EFL86476.1| carbon monoxide-induced hydrogenase, large subunit [Desulfovibrio
sp. 3_1_syn3]
Length = 360
Score = 293 bits (750), Expect = 4e-77, Method: Composition-based stats.
Identities = 113/391 (28%), Positives = 181/391 (46%), Gaps = 32/391 (8%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
S +FT+ GP H A + L ++GE V V+ G +HRG E + + ++
Sbjct: 2 SSTFTMPLGPVHVALEEPVYFRLTVEGETVRNVELTSGHVHRGMEAMATQRNLIKNTTLT 61
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
+R+ + + Y ++VE +LGI IP R + +RVL EI R+ SHL N QA +G
Sbjct: 62 ERVCSLCSNSHSFTYCMSVENVLGITIPERARYLRVLAEEIKRVASHLFNTAIQAHIIGF 121
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ + E RE + E G+RM+ A GGV D+ ++++ I A++
Sbjct: 122 KSLFMHVMEVREMMQDVKETVYGNRMNLASNCIGGVKCDVERDMLDYILGMIAKVEPAVD 181
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+I ++ N + R +G + EDA G G + RGSG D+RK PY Y EL+F
Sbjct: 182 EIREIYDTNGLVLARTKGLGLLPKEDAVRLGVVGPVARGSGVVIDVRKDSPYAAYPELNF 241
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
D+ + + R +VR+ E+ ES K+IRQC R+ P+
Sbjct: 242 DMVTSEGCCIHSRTMVRLNEIFESFKLIRQCCERVPDGPVTAPMRQ-------------- 287
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
+ E A EAP+GE Y+ ++G + P R K R P Y +
Sbjct: 288 ------------------IRTAEACARSEAPRGEVFYYIRTNGTDMPARLKWRVPSYMNW 329
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+A+ + + ++ADV+ I S+D +R
Sbjct: 330 EALGVMMRDCKVADVALITNSIDPCVSCTER 360
>gi|215428604|ref|ZP_03426523.1| NADH dehydrogenase subunit D [Mycobacterium tuberculosis T92]
gi|289751826|ref|ZP_06511204.1| NADH dehydrogenase subunit I D nuoD [Mycobacterium tuberculosis
T92]
gi|289692413|gb|EFD59842.1| NADH dehydrogenase subunit I D nuoD [Mycobacterium tuberculosis
T92]
Length = 424
Score = 293 bits (750), Expect = 4e-77, Method: Composition-based stats.
Identities = 143/342 (41%), Positives = 193/342 (56%), Gaps = 22/342 (6%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+N GPQHP+ HGVLRLILE++GE V IG LH G EK +E + + Q V +
Sbjct: 36 GERIVVNMGPQHPSTHGVLRLILEIEGETVVEARCGIGYLHTGIEKNLEYRYWTQGVTFV 95
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
R+DY++P E AY L VEKLLGI EIP R +IRVL E+ RI SHL+ + T M++
Sbjct: 96 TRMDYLSPFFNETAYCLGVEKLLGITDEIPERVNVIRVLMMELNRISSHLVALATGGMEL 155
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+TP GF RE ++ +E+ +G RM++AY RPGGV QD+PP +I
Sbjct: 156 GAMTPMFVGFRAREIVLTLFEKITGLRMNSAYIRPGGVAQDLPPNAATEIAEALKQLRQP 215
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L ++ +LL N I+K R +G + L G +G ++R +G DLRKS+PY Y
Sbjct: 216 LREMGELLNENAIWKARTQGVGYLDLTGCMALGITGPILRSTGLPHDLRKSEPYCGYQHY 275
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK--- 300
+FD+ D Y RY++R+ EM ES+KI+ QC+++L GP SD K+ P
Sbjct: 276 EFDVITDDSCDAYGRYMIRVKEMWESMKIVEQCLDKLR----PGPTMISDRKLAWPADLQ 331
Query: 301 -------------RADMKRSMESLIHHFKLYTEGYHVPVGEV 329
M SME+LIHHFKL TEG VP G
Sbjct: 332 VGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRVPAGPG 373
>gi|326559971|gb|EGE10369.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Moraxella
catarrhalis 46P47B1]
Length = 522
Score = 293 bits (749), Expect = 4e-77, Method: Composition-based stats.
Identities = 124/332 (37%), Positives = 183/332 (55%), Gaps = 4/332 (1%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+AHG RL+L+LDGE + P IG HRG EK+ E +T+ +P
Sbjct: 194 RDEDFMFLNIGPNHPSAHGAFRLVLQLDGEEIVDCIPDIGYHHRGAEKMAERQTWHSFIP 253
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ + E Y +AVEKL GI P R +IR++ SE RI ++LL T D
Sbjct: 254 YTDRIDYLGGVMNELPYIMAVEKLAGIITPERANIIRIMMSEFFRITNNLLYWGTFIQDA 313
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +TP + F +R+K E +G RMH A+FR GG D+P + + D P
Sbjct: 314 GGMTPVFYMFADRQKAYDVIEAVTGYRMHPAWFRIGGTAHDLPNGWQRLVREFLDWMPKR 373
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++ N + K R N+ + A WG +G +R +G +DLRK++PY Y
Sbjct: 374 IDEYVKATMTNSVLKGRTQNVAQYDAKHALAWGVTGAGLRATGIEFDLRKARPYLGYENF 433
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+FD+P+ +GD YDR LV++ E+R+S++II QC+N + G A P VPP +
Sbjct: 434 EFDVPVFYNGDAYDRCLVKIEEIRQSLRIIEQCLNNM----PSGAYKAEHPLAVPPPKER 489
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEA 335
+ +E+LI+HF + G +P GE VE
Sbjct: 490 TLQDIETLINHFVSVSWGPVMPAGESACMVEG 521
>gi|90425973|ref|YP_534343.1| NADH dehydrogenase (ubiquinone) [Rhodopseudomonas palustris BisB18]
gi|90107987|gb|ABD90024.1| ech hydrogenase subunit E [Rhodopseudomonas palustris BisB18]
Length = 361
Score = 293 bits (749), Expect = 5e-77, Method: Composition-based stats.
Identities = 110/392 (28%), Positives = 175/392 (44%), Gaps = 34/392 (8%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+SF + GP H + + ++++GE V ++ G +HRG E L + Q + +
Sbjct: 2 KSFNMPVGPLHVSLEEPMYFRIDVEGEKVAGLEITAGHVHRGIEYLTAKRNIYQNLALIE 61
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+ + + AY +A+E + GIE+P R Q +RV EI R+ SH+ NV A VG
Sbjct: 62 RVCSLCSNSHPEAYCMALETIAGIEVPERAQYLRVFADEIKRVASHMFNVAILAHVVGFE 121
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS-ALN 185
+ + E RE + E G+RM A GGV DI I D LN
Sbjct: 122 SLFMHVMEAREIMQDTKETVFGNRMDLAANIIGGVKYDIDATQSAYIISQLDRLEPLLLN 181
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+I + N + R IG + E +G G + RG+G +D+R + PY Y +D
Sbjct: 182 EIIPVYETNATIQSRTRGIGRISREHCIEYGLMGPVARGAGHGYDVRTAAPYAVYDRMDV 241
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL-GKNKVGPVSASDPKIVPPKRADM 304
++ GD + R +VR+ E+ S++++RQC+ L G GP+
Sbjct: 242 EVITYPDGDVWSRAMVRLKEVAASIRLLRQCLRDLPDGATDAGPLPF------------- 288
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
+P GE VEAP+GE Y+ +DG + P R K R P Y +
Sbjct: 289 -------------------IPAGEAVTKVEAPRGELVYYVNTDGTDIPARVKWRVPSYMN 329
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + G ++D+ I+ S+D +R
Sbjct: 330 WDVLHLMMVGEGISDIPLIVNSIDPCISCTER 361
>gi|254167383|ref|ZP_04874235.1| Respiratory-chain NADH dehydrogenase, 49 Kd subunit domain protein
[Aciduliprofundum boonei T469]
gi|197623646|gb|EDY36209.1| Respiratory-chain NADH dehydrogenase, 49 Kd subunit domain protein
[Aciduliprofundum boonei T469]
Length = 414
Score = 293 bits (749), Expect = 5e-77, Method: Composition-based stats.
Identities = 112/396 (28%), Positives = 176/396 (44%), Gaps = 32/396 (8%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVPYFDR 67
++I GP HPA H + L ++++GE + VD +HRG E + + +Q++ +R
Sbjct: 6 YSIPIGPLHPAIHEPITLKIDVEGERIVGVDVFCSQVHRGIEWIGMNRNNPIQSIYLAER 65
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ + + AVE GI P R IR + +E+ RI SHLL A ++G T
Sbjct: 66 VCGICNICHPFCMVQAVEDAAGITPPERADYIRTIMAELERIHSHLLWAGVAAHEIGFDT 125
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
+ + REK+M E SG+R+ A GGV +DI E I + I
Sbjct: 126 VFHYTWALREKVMDLIEYLSGNRVTKAIMMIGGVRRDISEEGKRKIKEGMQYYLEKFAKI 185
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
D+ + + R ++G + EDA G + R SG D+R+ PY Y++
Sbjct: 186 EDIYLNDPTIRMRTRDVGILTREDALRLCAVGPVARASGVPKDVRQDFPYGAYADYGVKA 245
Query: 248 PI------GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
HGD +DR +VR++E+++SV+II+ V+ L GP+ A +
Sbjct: 246 ITPDMYNGETHGDVFDRIIVRLLEVKQSVEIIKWAVDNL----PQGPILAEKNLVRLKLL 301
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPY-RCKIRAP 360
GE VEAP+GE Y+ + G +PY KIRAP
Sbjct: 302 LKKA--------------------EGEGIGRVEAPRGEDIHYVRLEKGKEPYLSWKIRAP 341
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Y ++ + G Q+ADV + S D ++R
Sbjct: 342 TYNNVLPWIPMLLGGQIADVPIVAASTDPCMSCLNR 377
>gi|14520922|ref|NP_126397.1| NADH dehydrogenase subunit D [Pyrococcus abyssi GE5]
gi|5458139|emb|CAB49628.1| nuoD NADH dehydrognease I, subunit D [Pyrococcus abyssi GE5]
Length = 394
Score = 292 bits (748), Expect = 6e-77, Method: Composition-based stats.
Identities = 129/394 (32%), Positives = 202/394 (51%), Gaps = 26/394 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ ++ + FGPQH A +IL++DG V + + G LHRG EKL E + + +
Sbjct: 25 EKDTYELFFGPQHMAT-ENFSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIAL 83
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
R+ E Y+LAV++++G E+P R Q IR E+ R+ ++L + + +G
Sbjct: 84 LLRICVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLG 143
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIP-PELVEDIGCWCDSFPSA 183
T W RE+LM +E +G+R++ Y PGGV +DIP + + + + S
Sbjct: 144 VYTAGQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSK 203
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L D +L+ N I +R IG + + A G +G +R +G A+D+RK PY Y EL
Sbjct: 204 LPDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPEL 263
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DF++P + GD R LVR E+ + + I+ Q + GP DP++ R
Sbjct: 264 DFEVPTLREGDALARALVRRYELEQDLYILEQLLEMGP---PSGPYKVEDPRLKNLPR-- 318
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ VP G+ +A VE+ KG+FG Y++SDG +KPYR +R P A
Sbjct: 319 ------------------FKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIA 360
Query: 364 H-LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H ++ +E L G ++ADV IL SLD ++DR
Sbjct: 361 HGIRVLEQLLVGARIADVPVILMSLDNCPPDIDR 394
>gi|296415316|ref|XP_002837336.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295633200|emb|CAZ81527.1| unnamed protein product [Tuber melanosporum]
Length = 279
Score = 292 bits (748), Expect = 6e-77, Method: Composition-based stats.
Identities = 164/283 (57%), Positives = 214/283 (75%), Gaps = 4/283 (1%)
Query: 114 LNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDI 173
++V + AMDVGALTP LWGFEEREKLM FYER SG+R+HAAY RPGGVHQD+P L++DI
Sbjct: 1 MSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDLPVGLLDDI 60
Query: 174 GCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRK 233
W F +++ +LLT NRI+ R +G V +A + F+GVM+RGSG AWD+RK
Sbjct: 61 YQWATQFGDRIDETEELLTDNRIWIARTKGVGVVSAAEAINYSFTGVMLRGSGVAWDIRK 120
Query: 234 SQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASD 293
S PY+ Y ++DFD+P+G+ GDCYDRYL RM E R+S++II QC+N++ GP+ D
Sbjct: 121 SAPYDAYGQVDFDVPVGQAGDCYDRYLCRMEEFRQSLRIIHQCLNKM----PPGPIRVED 176
Query: 294 PKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPY 353
KI PP R MK +ME+LIHHF LYT+GY VP GE Y+A+EAPKGE GV+++SDG +PY
Sbjct: 177 YKISPPPRVAMKENMEALIHHFLLYTKGYAVPPGETYSAIEAPKGEMGVFVVSDGSERPY 236
Query: 354 RCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
RCKIRAPG+AHL + + + +GH LAD AI+G++D+VFGEVDR
Sbjct: 237 RCKIRAPGFAHLGSFDQISRGHLLADAVAIIGTMDLVFGEVDR 279
>gi|282163193|ref|YP_003355578.1| [NiFe]-hydrogenase large subunit [Methanocella paludicola SANAE]
gi|282155507|dbj|BAI60595.1| [NiFe]-hydrogenase large subunit [Methanocella paludicola SANAE]
Length = 359
Score = 292 bits (748), Expect = 7e-77, Method: Composition-based stats.
Identities = 118/389 (30%), Positives = 184/389 (47%), Gaps = 31/389 (7%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
I FGPQHP LRL L LDGEIV + G +H+G EK E + + +R
Sbjct: 2 RTVIQFGPQHPVWIEPLRLKLSLDGEIVRDAELEAGYVHKGLEKKFEW-DYNKGAYLSER 60
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ + + Y +AVE +G+EIP R +IR + E+ R+ SHLL + +G
Sbjct: 61 VCAICTQHHSTCYCMAVEGTMGLEIPRRAAIIRTIMLELERLHSHLLAIGLTLESIGFEN 120
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
+ F RE ++ +ER++G+R+ GGV ++I PE+ ++I +CD+ +D+
Sbjct: 121 MFMLCFRNREMVLDVFERSTGNRVLHGINIVGGVIRNIGPEMAKEISDFCDAMEKKCHDL 180
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
++ + +QR +G + + A G + RGS +D+R + PY Y E+
Sbjct: 181 ESMIVNSYTIRQRMQGVGVMSEKLAKDLCVVGPVARGSNVPYDVRHAYPYLLYKEVKVTP 240
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
K GDC+ R LVR+ E+ +S++IIRQC+ L G
Sbjct: 241 VTEKDGDCWARSLVRVRELFQSIEIIRQCLPLLEGTP----------------------- 277
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
+L+ + +P GE +A EAP+GE Y+ + R KIR YA+
Sbjct: 278 -------DELFAKSKTLPDGEYFARDEAPRGELFYYVRGKKSKELDRVKIRTSTYANGIG 330
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ L +G LADV I + D G DR
Sbjct: 331 IVPLIRGSHLADVGLITITFDPCIGCFDR 359
>gi|332295486|ref|YP_004437409.1| NADH dehydrogenase (quinone) [Thermodesulfobium narugense DSM
14796]
gi|332178589|gb|AEE14278.1| NADH dehydrogenase (quinone) [Thermodesulfobium narugense DSM
14796]
Length = 365
Score = 292 bits (748), Expect = 7e-77, Method: Composition-based stats.
Identities = 104/398 (26%), Positives = 175/398 (43%), Gaps = 35/398 (8%)
Query: 1 MDKKKSRS-FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFL 59
M + + + F++ GP H A LE +G ++ +G +HR E L TK F
Sbjct: 1 MSENEIKRGFSLPIGPIHIALEEPATYTLEAEGSKIKSATIDLGHVHRSIEYLSATKNFW 60
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
Q +P +R+ + M+ A+ AVEKL + +P R + +R + SE+ RI SHLL
Sbjct: 61 QVIPLVERVCGIUSMSHPMAWVQAVEKLGNVSVPPRARCLRTIVSELERIHSHLLWAGIA 120
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
A +G ++ + REK+ E +G R + ++ GG+ +DI +E I
Sbjct: 121 AHIIGFISVFYLIWNSREKVKDLMEITTGHRANYSFNTIGGIRRDITD--LEPIYKILSE 178
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRK-SQPYE 238
D++ ++ + R +G + EDA + G R SG D+RK +P
Sbjct: 179 VEEDCKSFIDIVMNDKTIELRTKGVGVLTKEDAITYSVVGPTARASGIPQDIRKVDEPGA 238
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
Y +D+ + + D + R VR++E+ ES+ IIR+ + + +
Sbjct: 239 AYDLIDWKVIVSDGCDVFARVEVRLLEILESIHIIREILKIIPEGPIAKEIR-------- 290
Query: 299 PKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
+P G EAP+GE L+SDG + P+R KIR
Sbjct: 291 -----------------------PIIPEGTAIGRHEAPRGEDVHILVSDGSDVPFRHKIR 327
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AP + +L A+ + + LA+ + I+ S+D R
Sbjct: 328 APSFVNLPALSAMLPNNDLANATLIVASVDPCLSCTQR 365
>gi|161527787|ref|YP_001581613.1| NADH dehydrogenase [Nitrosopumilus maritimus SCM1]
gi|160339088|gb|ABX12175.1| NADH dehydrogenase (quinone) [Nitrosopumilus maritimus SCM1]
Length = 378
Score = 292 bits (748), Expect = 7e-77, Method: Composition-based stats.
Identities = 122/396 (30%), Positives = 197/396 (49%), Gaps = 28/396 (7%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ K R T+N GPQHP + G +R+++++DG+ + DP G +HRG EK+ E + ++
Sbjct: 11 LKKVDERIMTLNVGPQHPGS-GHMRIVVQIDGDYIVACDPDPGYVHRGEEKMAEYRNYIT 69
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
VP+ +R N + Y L E++LGIE+P R + +RV+ SE+ R + + +
Sbjct: 70 NVPHLERPVIHDSCNVLYPYVLGAEEILGIEVPERAKYVRVICSELNRCIYTMYWLAIYG 129
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+ +G T +W +RE L+ E+ SG+R+ A+F PGGV D+P + + F
Sbjct: 130 IFLGHSTMFMWPAGDRELLIDLMEKVSGARVTHAHFIPGGVRNDLPANFEDVCLRQVNYF 189
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ + + + N I R + G + E+A +G +G ++R SG +DLR PY+ Y
Sbjct: 190 EKRIKEYAAVFYDNPILISRTQDTGVLSRENAIRYGTTGSVLRASGVDYDLRVKAPYDVY 249
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
ELD + K GD Y R V ++M ES IIRQ + ++ V +PK P
Sbjct: 250 DELDVHTNVLKEGDSYARSKVPWLDMMESCNIIRQALQKMPKSGSVRTKLKPNPKTKGPA 309
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
VY VE+ +G G Y++SDG +PYR K+ P
Sbjct: 310 ---------------------------TVYKRVESGRGSLGCYIVSDGKTEPYRVKMSVP 342
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +L AM L G +L ++ ++ SL+ E DR
Sbjct: 343 SFRNLLAMPNLLIGEKLGNMPSVYWSLNYWPVEADR 378
>gi|254166848|ref|ZP_04873702.1| Respiratory-chain NADH dehydrogenase, 49 Kd subunit domain protein
[Aciduliprofundum boonei T469]
gi|289596352|ref|YP_003483048.1| NADH dehydrogenase (quinone) [Aciduliprofundum boonei T469]
gi|197624458|gb|EDY37019.1| Respiratory-chain NADH dehydrogenase, 49 Kd subunit domain protein
[Aciduliprofundum boonei T469]
gi|289534139|gb|ADD08486.1| NADH dehydrogenase (quinone) [Aciduliprofundum boonei T469]
Length = 414
Score = 292 bits (747), Expect = 7e-77, Method: Composition-based stats.
Identities = 112/396 (28%), Positives = 176/396 (44%), Gaps = 32/396 (8%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVPYFDR 67
++I GP HPA H + L ++++GE + VD +HRG E + + +Q++ +R
Sbjct: 6 YSIPIGPLHPAIHEPITLKIDVEGERIVGVDVFCSQVHRGIEWIGMNRNNPIQSIYLAER 65
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ + + AVE GI P R IR + +E+ RI SHLL A ++G T
Sbjct: 66 VCGICNICHPFCMVQAVEDAAGISPPERADYIRTIMAELERIHSHLLWAGVAAHEIGFDT 125
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
+ + REK+M E SG+R+ A GGV +DI E I + I
Sbjct: 126 VFHYTWALREKVMDLIEYLSGNRVTKAIMMIGGVRRDISEEGKRKIKEGMQYYMEKFAKI 185
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
D+ + + R ++G + EDA G + R SG D+R+ PY Y++
Sbjct: 186 EDIYLNDPTIRMRTRDVGILTREDALKLCAVGPVARASGVPKDVRQDFPYGAYADYGVKA 245
Query: 248 PI------GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
HGD +DR +VR++E+++SV+II+ V+ L GP+ A +
Sbjct: 246 ITPDMYNGETHGDVFDRIIVRLLEVKQSVEIIKWAVDNL----PQGPILAEKNLVRLKLL 301
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPY-RCKIRAP 360
GE VEAP+GE Y+ + G +PY KIRAP
Sbjct: 302 LKKA--------------------EGEGIGRVEAPRGEDIHYVRLEKGKEPYLSWKIRAP 341
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Y ++ + G Q+ADV + S D ++R
Sbjct: 342 TYNNVLPWIPMLLGGQIADVPIVAASTDPCMSCLNR 377
>gi|197116469|ref|YP_002136896.1| carbon monoxide-induced hydrogenase large subunit [Geobacter
bemidjiensis Bem]
gi|197085829|gb|ACH37100.1| carbon monoxide-induced hydrogenase, large subunit [Geobacter
bemidjiensis Bem]
Length = 359
Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats.
Identities = 107/387 (27%), Positives = 168/387 (43%), Gaps = 31/387 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP A + ++L+G+ V +D G +HRG E L+ + Q + +RL
Sbjct: 4 VIELGPHQLALEEPMYFRVKLEGDRVAGLDVQPGQVHRGMEHLVMRRNLYQNITLLERLC 63
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + + A+E++ G+ IP R + +R + EI RI SHL QA +G
Sbjct: 64 SLCSNSHPSTFCSAIEEVAGVAIPERAEYLRAVADEIKRIASHLFCCAVQANLIGQTALF 123
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
E RE + E G+RM A GGV D+ P+ + ++ + L+++
Sbjct: 124 RRAMEVREIMQRSKEAIYGNRMDLAANCIGGVRYDLTPDAAMYLARQMEAMKAPLDELYL 183
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
N R +G + +A G + R G +D+RK PY Y L+F +
Sbjct: 184 QFQNNPAIMARTAGVGVLPRLEAIECAVVGPVARACGIDYDVRKKSPYGAYDRLEFSTSL 243
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
+ GD R LVR+ E R+SV +I QC+ L+ P AD+
Sbjct: 244 QQAGDVRARNLVRLAEARQSVSLIEQCLAGLVPG---------------PLCADLL---- 284
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
+P GE A EAP+GE YL +DG + P R K R P Y + A++
Sbjct: 285 ------------PEIPAGEAVAKSEAPRGELVYYLRTDGTDFPLRLKWRVPSYMNWDALK 332
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVDR 396
+ G +A++ I+ S+D DR
Sbjct: 333 VMLHGEPVANIPLIVNSIDPCIACTDR 359
>gi|149193851|ref|ZP_01870949.1| carbon monoxide-induced hydrogenase, large subunit [Caminibacter
mediatlanticus TB-2]
gi|149135804|gb|EDM24282.1| carbon monoxide-induced hydrogenase, large subunit [Caminibacter
mediatlanticus TB-2]
Length = 358
Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats.
Identities = 113/387 (29%), Positives = 175/387 (45%), Gaps = 33/387 (8%)
Query: 11 INFGPQHPAAHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
IN GP + + L++D EIV V+ G +HRG E L K F Q + +RL
Sbjct: 4 INIGPFLASLEEPIYFKLDVDDNEIVRDVEIVNGFVHRGLEALTMQKNFFQNLILTERLC 63
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ N +Y LA+EK+ IE+ R +RV+ E+ RI S++ N++ A V
Sbjct: 64 ALCSNNHPFSYCLALEKIAEIEVSKRADYLRVIADEVKRIASNMFNLSMLAHLVHDYELM 123
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ RE + E G+RM + GGV ++ + E I + ++ + +
Sbjct: 124 RDTMDTREIMQDVKETIWGNRMDLSAVTIGGVKYNLDKQKSEFILNSLEKIEPLVDKLFE 183
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
N ++ IG + + A +G SG + RGSG D+R PY Y EL+ + +
Sbjct: 184 RFC-NSEKIKKTKGIGVLTKQQALEFGVSGPVARGSGINNDVRVKAPYAAYDELEVRVDL 242
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD Y R VR +++ ++KI++ +N L
Sbjct: 243 ESDGDVYSRMKVRWYDIKNAIKILKNAINNLPSGP------------------------- 277
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
IH K H+P GE EAP+GE Y+ +DGG KP R + R P Y + QA+E
Sbjct: 278 --IHLEKR----PHIPAGEATVRTEAPRGELIYYVKTDGGQKPKRMRWRVPTYMNFQALE 331
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVDR 396
+ KG++ +DV IL S+D DR
Sbjct: 332 EMIKGNRASDVVLILNSIDPCVSCTDR 358
>gi|288560654|ref|YP_003424140.1| energy-converting hydrogenase A subunit O EhaO [Methanobrevibacter
ruminantium M1]
gi|288543364|gb|ADC47248.1| energy-converting hydrogenase A subunit O EhaO [Methanobrevibacter
ruminantium M1]
Length = 375
Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats.
Identities = 97/390 (24%), Positives = 153/390 (39%), Gaps = 37/390 (9%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
+ GP HP LRL L+ GE V + + G +HRG EK++E KT+ + + +R+
Sbjct: 1 MILPIGPIHPGLKEPLRLKLQTQGEKVIKAEIDYGYVHRGIEKIMEGKTWQKCIYLSERI 60
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+ +A +E + G++ P+R Q +RV+ +EI RI SHLL +T + T
Sbjct: 61 CGICSYEHTQTFAETLEGISGVQAPLRAQYLRVITNEIDRIQSHLLANSTFFKTLDHETL 120
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
+ RE M E +G+R++ + GGV D I +
Sbjct: 121 FMHVLALREYAMDSLELLTGNRVNLGWNVVGGVRMDADERHFNAILENMKKIEDGFDRHV 180
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
L I R +G + E+A G + R SG DLR+ Y DF
Sbjct: 181 ALFEEAPIVALRAKGVGVMTKEEAIKGHAVGPIGRASGIKHDLREEH-YTYKDHFDFKPI 239
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
K GD Y R L R+ E+ +S+ ++RQ + + + PV
Sbjct: 240 WRKEGDNYARTLNRLYEVEQSIDLVRQAIENMPKGDIRTPV------------------- 280
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL-QA 367
+P G EAP+GE ++G R IR P ++
Sbjct: 281 --------------DIPSGYGEWRNEAPRGEVRYMAETNGD-LIKRISIRTPSIMNIDSC 325
Query: 368 MEFLCKG-HQLADVSAILGSLDIVFGEVDR 396
++ K +AD + S D +R
Sbjct: 326 ARYMLKDVATVADAVSTYASSDPCIACTER 355
>gi|240102771|ref|YP_002959080.1| NADH dehydrogenase subunit D [Thermococcus gammatolerans EJ3]
gi|239910325|gb|ACS33216.1| membrane bound oxidoreductase, MbxL subunit (MbxL) [Thermococcus
gammatolerans EJ3]
Length = 394
Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats.
Identities = 128/392 (32%), Positives = 198/392 (50%), Gaps = 26/392 (6%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
++ + FGPQH A +IL++DG VER + G LHRG EKL E + + +
Sbjct: 27 DTYELFFGPQHMAT-ENFSIILKMDGNRVERAIVNPGFLHRGFEKLAEGRPYFTNIALLL 85
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+ E+ Y++AV++++G E+P R IR E+ R+ + + + ++G
Sbjct: 86 RICVPESDVPENIYSMAVDEIVGWEVPERAIWIRTTVLEMARLSAWMFWIMGFGNEIGLY 145
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIP-PELVEDIGCWCDSFPSALN 185
T W RE+LM +E +G R++ Y PGGV +DIP + + + S L
Sbjct: 146 TAGQWAAAYRERLMRLFEELTGGRVYHIYTVPGGVRRDIPGDRWLRQLRDTVEYIKSKLK 205
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
D ++L N I +R +G + + A +G +R G +D+RK PY Y ELDF
Sbjct: 206 DFDEILFDNYITFERTEGVGVMDKKFALKHAVTGPNLRAVGVPYDVRKDDPYYLYPELDF 265
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
++P+ K GD R LVR E+ + + I+ Q ++ GP DPK+ R
Sbjct: 266 EVPVLKEGDSLARVLVRRYEIEQDLYILEQLLDMGP---PSGPYMVQDPKLKNLPR---- 318
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH- 364
+ VP G+ YA VE+ KG+FG Y++SDG +KPYR +R P +H
Sbjct: 319 ----------------FKVPAGDAYAHVESTKGDFGAYVVSDGTHKPYRVHVRGPSQSHG 362
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +E L KG +LADV IL +LD ++DR
Sbjct: 363 VTVLEELLKGARLADVPVILKTLDNCPPDIDR 394
>gi|282856069|ref|ZP_06265355.1| hydrogenase-4 component G [Pyramidobacter piscolens W5455]
gi|282586090|gb|EFB91372.1| hydrogenase-4 component G [Pyramidobacter piscolens W5455]
Length = 413
Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats.
Identities = 101/398 (25%), Positives = 184/398 (46%), Gaps = 31/398 (7%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
++++ + GP H + L+++GE + G +HRG E + + +Q +
Sbjct: 3 TKTYKLPIGPAHVGLKEPVTAWLDIEGERIVDATVRPGAIHRGIEFMSRERNPVQVIFLA 62
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
+R+ + + AYA AVE +E+P+RGQ IR L E+ R+ SH+L ++ +G
Sbjct: 63 ERICGICSFSHSIAYAKAVEDAAKVEVPVRGQYIRSLVLELERVHSHILWLSVACYSIGF 122
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ G REK+M E +G+R++ A GGV D+ P++ + + S +
Sbjct: 123 DSAFHLGMALREKVMDVLEALTGNRVNYAVTAIGGVRWDVTPKVDRVVRDMIAYYRSEFH 182
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ D + + + K R ++G + DA G RGSG D+R+S PY+ Y ++
Sbjct: 183 EYYDAVINDPVVKARLRDVGVLPTGDAVRLDALGPTSRGSGVRADVRESSPYDAYCDIPV 242
Query: 246 DIPI------GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
+ HGD DR+LVR++E+ +S+ ++ ++ L GP++A +
Sbjct: 243 KAIVPQDYFGEVHGDVLDRFLVRLLEVYQSLDLLESILDGL----PEGPITAFPKPVAGL 298
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISD-GGNKPYRCKIR 358
+ G Y +EAP+G+ + G + K+R
Sbjct: 299 AKLKAAG--------------------GFGYGCIEAPRGDVTHVVELKAGDENVFMWKVR 338
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AP YA+ QA + G+++AD + I+ S+D ++R
Sbjct: 339 APTYANAQAWPLMFIGNEIADAALIINSIDPCISCMER 376
>gi|315427040|dbj|BAJ48657.1| NADH dehydrogenase I subunit D [Candidatus Caldiarchaeum
subterraneum]
Length = 405
Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats.
Identities = 145/413 (35%), Positives = 206/413 (49%), Gaps = 56/413 (13%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
+++GPQHP G RLI+ + G+ V +P G +HRG EKL E KT++ +P+ +R
Sbjct: 22 MSYGPQHPGT-GHFRLIITVLGDTVLEAEPDPGFVHRGEEKLAEYKTWITNIPHLERPVI 80
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ ++ Y LAVEKL+GIE P R + +RV+ +E+ RI SHL + +G T L
Sbjct: 81 LDSAGIQYPYVLAVEKLMGIEAPERAKYLRVIMAELQRIASHLYWFALYGVFLGNSTMFL 140
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIP------------------------ 166
W F +RE L+ G R+ +YF PGGV D+P
Sbjct: 141 WCFGDREYLVDLTSLIGGQRITHSYFEPGGVRNDMPSRVPQDLLKEFNRYYRMVMGRDLP 200
Query: 167 ---PELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIR 223
+L + I C+ F L+D DL N +F R N+G +K EDA G G +R
Sbjct: 201 GDADQLRKYITYVCECFDKRLDDYWDLFFNNELFISRTRNVGILKPEDAIKLGVVGTTLR 260
Query: 224 GSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGK 283
SG +D R + PY+ YS+L F+IPIG+ GDCYDR +V EMRES +II Q +
Sbjct: 261 ASGIKFDNRVNNPYDAYSQLKFEIPIGERGDCYDRAIVGFKEMRESCRIISQAAEMMPD- 319
Query: 284 NKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVY 343
GPV I VP GE A EA +GE Y
Sbjct: 320 ---GPVKVKQHPI------------------------NIRVPAGEAVARTEAARGEMMYY 352
Query: 344 LISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ S+GG+KPYR KI P + + A+++L +G ++A++ I SL+ E DR
Sbjct: 353 IRSEGGDKPYRVKISTPSFRLIPAIKYLLRGEEIANIPPIYWSLNYWPVEADR 405
>gi|89895861|ref|YP_519348.1| formate hydrogenlyase subunit 5 precursor [Desulfitobacterium
hafniense Y51]
gi|89335309|dbj|BAE84904.1| formate hydrogenlyase subunit 5 precursor [Desulfitobacterium
hafniense Y51]
Length = 554
Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats.
Identities = 88/395 (22%), Positives = 164/395 (41%), Gaps = 22/395 (5%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ + +F I GP H + GE V +D + H+G EKL+E K +
Sbjct: 182 EAEGEGTFEIPVGPVHAGIIEPGHFRFQTIGETVLHLDAQLFYTHKGIEKLLEGKDLEEG 241
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+ +R+ V ++ AY AVEKL G+E+P R + +E+ R+ +H+ ++
Sbjct: 242 LKIVERVCGVCAVSHALAYCEAVEKLKGMEVPRWILGWRTVLAELERLYNHVGDIGNLCA 301
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VG + + +E+L + G R PGGV + E +
Sbjct: 302 GVGFALGNVNALQNKEQLQRLNHQLFGHRFLRGNITPGGVKKIPQGEERAYLQRRLAELE 361
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+ L+ + F+QR + G + + A G +G R SG + D R+ + Y
Sbjct: 362 QDFEEWLPLIQEHDGFRQRAITTGVLSKQSALDLGVTGPAARASGISQDWRERHAHLLYE 421
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
EL + + + GD + R +VR+ E+++S ++ + + +
Sbjct: 422 ELKMEPQVEQEGDVWSRLMVRVREVKQSFALLAELLEGDF------------------LQ 463
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+++ L + Y + E+P+G ++L+ D K YRC+IR+
Sbjct: 464 DTVEQGDFDLNGSGAFSPQPYSF----AWGCAESPRGTDVIWLMLDDEGKIYRCRIRSAS 519
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YA+ A+ +G+ + D I S ++ + DR
Sbjct: 520 YANWAAVPLAVQGNIVPDFPLINKSFELCYSCCDR 554
>gi|254171822|ref|ZP_04878498.1| NADH dehydrogenase delta subunit [Thermococcus sp. AM4]
gi|214033718|gb|EEB74544.1| NADH dehydrogenase delta subunit [Thermococcus sp. AM4]
Length = 394
Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats.
Identities = 127/392 (32%), Positives = 198/392 (50%), Gaps = 26/392 (6%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
++ + FGPQH A +IL++DG VE+ + G LHRG EKL E + + +
Sbjct: 27 DTYELFFGPQHMAT-ENFSIILKMDGNRVEKAIVNPGFLHRGFEKLAEQRPYFTNIALLL 85
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+ E+ Y++AV++++G E+P R IR E+ R+ + + + ++G
Sbjct: 86 RICVPESDVPENIYSMAVDEIIGWEVPERAIWIRTTVLEMARVSAWMFWIMGFGNEIGLY 145
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIP-PELVEDIGCWCDSFPSALN 185
T W RE+ M +E +G R++ Y PGGV +DIP + + + + S L
Sbjct: 146 TAGQWAAAYRERFMRLFEELTGGRVYHIYTVPGGVRRDIPGDKWLRQLRDTVEYVKSKLK 205
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
D ++L N I +R +G + + A +G +R G +D+RK PY Y ELDF
Sbjct: 206 DFDEILFDNYITFERTEGVGVMDKKFALKHAVTGPNLRAVGVPYDVRKDDPYYLYPELDF 265
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
++P+ K GD R LVR E+ + + I+ Q ++ GP DPK+ R
Sbjct: 266 EVPVLKEGDSLARVLVRRYELEQDLYILEQLLDMGP---PSGPYMVKDPKLKNLPR---- 318
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH- 364
+ VP G+ YA VE+ KG+FG Y++SDG +KPYR IR P +H
Sbjct: 319 ----------------FKVPAGDAYAHVESTKGDFGAYVVSDGSHKPYRVHIRGPSQSHG 362
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +E L KG +LADV IL +LD ++DR
Sbjct: 363 VTVLEELLKGARLADVPVILKTLDNCPPDIDR 394
>gi|14591237|ref|NP_143314.1| NADH dehydrogenase subunit D [Pyrococcus horikoshii OT3]
gi|3257871|dbj|BAA30554.1| 394aa long hypothetical NADH-ubiquinone oxidoreductase subunit
[Pyrococcus horikoshii OT3]
Length = 394
Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats.
Identities = 130/392 (33%), Positives = 204/392 (52%), Gaps = 26/392 (6%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
++ + FGPQH A +IL++DG V + + G LHRG EKL E + + +
Sbjct: 27 DTYELFFGPQHMAT-ENFSIILKMDGNRVVKAIANPGFLHRGFEKLAEFRPWYTNIALLL 85
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+ E Y++AV++++G E+P R Q IR L E+ R+ ++L + + +G
Sbjct: 86 RICVPESDVPEAIYSMAVDEIIGWEVPERAQWIRTLVLELARVSAYLFWIMGLSFKLGVY 145
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIP-PELVEDIGCWCDSFPSALN 185
T W RE++M +E +G+R++ + PGGV +DIP + + + + S L
Sbjct: 146 TAGQWAAAYRERIMRIFEELTGARVYHIFTIPGGVRRDIPGDKWLRQVRDTVEYIRSKLP 205
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
D ++L N I +R IG + + A G +G +R +G A+D+RK PY YSE++F
Sbjct: 206 DFDNILFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLFYSEVEF 265
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
++P K GD R LVR E+ + + II Q + GP DP++ R
Sbjct: 266 EVPTLKEGDALARALVRRYELEQDLYIIEQLLEMGP---PSGPYKVEDPRLKNLPR---- 318
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH- 364
+ VP G+ +A VE+ KG+FG Y++SDGGNKPYR +R P AH
Sbjct: 319 ----------------FKVPAGDAFAHVESTKGDFGAYVVSDGGNKPYRVHVRGPSIAHG 362
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ +E L G ++ADV IL SLD ++DR
Sbjct: 363 IRVLEKLLVGARIADVPIILMSLDNCPPDIDR 394
>gi|139439381|ref|ZP_01772822.1| Hypothetical protein COLAER_01841 [Collinsella aerofaciens ATCC
25986]
gi|133775160|gb|EBA38980.1| Hypothetical protein COLAER_01841 [Collinsella aerofaciens ATCC
25986]
Length = 362
Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats.
Identities = 102/387 (26%), Positives = 159/387 (41%), Gaps = 30/387 (7%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I FGPQHP L L L ++ + V P IG +HRG EKL E + Q +R+
Sbjct: 6 VIPFGPQHPVLPEPLHLDLVIEDDRVIEAIPQIGFVHRGLEKLTERRDMHQFGYIAERIC 65
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + + YA A E++L IE+P R Q IR + E+ RI SHLL + A G
Sbjct: 66 GICAVGHSYGYASACERMLDIEVPGRAQYIRTILHELSRIHSHLLWLGLLADAFGFEALF 125
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ RE+++ +E G R+ + GG+ DI + I D+ +
Sbjct: 126 YRSWTLREQILKIFESTCGGRVILSINEIGGLKHDIEDSELAGIVQTLDAMRPDYEALVH 185
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ +R +G + +DA G R SG +D R F+ +
Sbjct: 186 TFLDDNSCGERLHGVGVISKKDALELSMVGPFGRASGVDYDARMFGDGAYADLAAFEPIV 245
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GDCY R VR E+ +++ IIR+ V ++ G K+ P A
Sbjct: 246 ATDGDCYARCQVRCAEVTQAMDIIRELVGKIPHDGIGGR-----TKLTPADGAR------ 294
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
GEV +E P+GE Y+ +G R ++R P +L +
Sbjct: 295 -----------------GEVV--IEQPRGEAYYYVRGNGTKNLDRFRVRTPTSQNLAGLT 335
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVDR 396
+G LA+V I+ ++D +R
Sbjct: 336 HALQGVLLANVPMIILTIDPCISCTER 362
>gi|154250403|ref|YP_001411228.1| NADH dehydrogenase subunit D [Fervidobacterium nodosum Rt17-B1]
gi|154154339|gb|ABS61571.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1]
Length = 367
Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats.
Identities = 119/390 (30%), Positives = 191/390 (48%), Gaps = 26/390 (6%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
+ FGP HP HG + + ++G+IV + P G LHRG EKL+E + + Q + R
Sbjct: 3 EVKLFFGPNHPGMHGNFSVHMYVEGDIVVKARPLPGFLHRGFEKLMERRLWYQNLALIPR 62
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ P E YA+A+EK+ +E+P R Q IR+L E+ RI +HL + +G T
Sbjct: 63 ICVPEPDINEACYAMAIEKIAKVEVPERAQWIRMLVLELARIANHLWSFGGIGGALGMYT 122
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
W +R++++ +E +G+R++ Y PGGV +D+ P L + I D L +
Sbjct: 123 SMFWSVSDRDRVLDIFEELTGARIYHMYIIPGGVRKDLTPGLEDKIRKLMDYIEEKLPEY 182
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ NRI R I + E G +G+ +R +G +D+RK PY Y +++FDI
Sbjct: 183 ETFILKNRILHTRLKGIAKIDTETCLKIGVTGIGLRATGVPYDIRKVDPYLFYDKVEFDI 242
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
P GD Y R ++ E+R+S++IIRQ + ++ +S + +
Sbjct: 243 PTATEGDAYARISLKPKEIRQSIRIIRQILEKMPTGPVNVRISDGNGLRI---------- 292
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH-LQ 366
VP G YA VE+ +GE+G ++SDGG PYR +R Y L
Sbjct: 293 ---------------RVPKGMAYARVESTRGEYGYLVVSDGGETPYRVAVRGASYPQGLY 337
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+E G ++ DV L ++ + E+DR
Sbjct: 338 GVEHFLPGTRIDDVPIWLDTMGVCAPEIDR 367
>gi|126460648|ref|YP_001056926.1| NADH dehydrogenase (ubiquinone) [Pyrobaculum calidifontis JCM
11548]
gi|126250369|gb|ABO09460.1| NADH dehydrogenase (ubiquinone) [Pyrobaculum calidifontis JCM
11548]
Length = 406
Score = 289 bits (741), Expect = 4e-76, Method: Composition-based stats.
Identities = 119/390 (30%), Positives = 187/390 (47%), Gaps = 11/390 (2%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
R + GPQHP + G +RL L LDG+I+ V P G +HRG EKL E + + +P +
Sbjct: 28 RGLVLVVGPQHPGS-GHMRLFLVLDGDIIVDVVPDPGFVHRGVEKLAENRPYWTLIPLVE 86
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
+ + MN + LA+EK LG+E P R Q +R++ +E+ RI +HL ++ + +G
Sbjct: 87 KASIMDSMNITYPAVLALEKALGLEPPPRAQYLRLIMAELSRIRTHLYDLALLGIFLGHS 146
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
T +WGF ++ + + +G+R +Y PGGV +D PE + + L D
Sbjct: 147 TAFMWGFALQDLFAEVFAKITGARTTISYPAPGGVRRDFKPEHIALVERLLAKVEKKLGD 206
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
L N + K R +G + + A G G RGSG +D+R + PY+ Y E+DF+
Sbjct: 207 FKTLFLDNPVTKARLEGVGVLDAKAAAEVGAVGPFARGSGIDFDVRSAYPYDAYREIDFE 266
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ K GD R + R E+ S+ ++RQ + G V + P+
Sbjct: 267 PVVEKAGDALARVMARWREVYASIDLVRQALR----SLPEGDVVDQALLVKNPEHRR--- 319
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
E + +YT Y GE EA +G V++ + G + YR + P + +L+
Sbjct: 320 --EGMSGILGVYTYLY-PEPGEHMGMAEASRGLAYVHIFATGTQRLYRMRFVTPSWRNLR 376
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AM K +LAD+ AI S E DR
Sbjct: 377 AMIEAMKDQRLADMPAIYMSFGYFPPEADR 406
>gi|325288318|ref|YP_004264499.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Syntrophobotulus
glycolicus DSM 8271]
gi|324963719|gb|ADY54498.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Syntrophobotulus
glycolicus DSM 8271]
Length = 529
Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats.
Identities = 93/388 (23%), Positives = 157/388 (40%), Gaps = 31/388 (7%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
+ GP H GE V ++ + HRG EK+ E KT Q + +R+
Sbjct: 173 MQVPVGPIHAGIIEPGHFRFSTVGEKVLNLEAQLFYTHRGMEKISEGKTSRQGLLIAERI 232
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+ AY LA EKL G +P R IR + E+ R+ +H+ +V VG
Sbjct: 233 CGACSFSHSTAYCLAWEKLSGTRVPERALYIRTIGVELERLYNHIGDVGNICAGVGLAFG 292
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
+ G +E++ ERA GSR PGGV +D+ EDI D +++
Sbjct: 293 TMQGARLKEEMQQLNERACGSRFLRGINIPGGVRKDLDTGSREDILITLDKVEIEFKEVT 352
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
++L N + R N G ++ A G R +G D R+ P+ Y +L F +P
Sbjct: 353 EILLANDSYLDRTQNTGILQKALARDLHAVGPAARSAGVDEDTRRDLPHLVYPKLSFRVP 412
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
+ + GD R +R+ E+ +S+ +IRQ ++ + ++ +
Sbjct: 413 VYQEGDVLARVRIRVEEVFQSIGMIRQALDLMPPGELAAEMNQA---------------- 456
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
P E+ +GE +++DG N+ YR +R+ Y + +
Sbjct: 457 ---------------PPYSYAIGMTESARGENVHLIMTDGKNRLYRHMVRSASYCNWAVL 501
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ + D I S ++ + DR
Sbjct: 502 PSTVPGNIVPDFPLINKSFELCYSCFDR 529
>gi|224372678|ref|YP_002607050.1| Ech Hydrogenase, Subunit [Nautilia profundicola AmH]
gi|223588473|gb|ACM92209.1| Ech Hydrogenase, Subunit [Nautilia profundicola AmH]
Length = 361
Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats.
Identities = 98/392 (25%), Positives = 158/392 (40%), Gaps = 33/392 (8%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETK-TFLQAVPY 64
+ FG QH A + + E E++ V +IG +HRG EK T+ + Q
Sbjct: 2 GNKIIVPFGSQHVALPEPVSFLFETQNEVITDVTVNIGYVHRGIEKAAITRFEYTQLPYL 61
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
R+ + + AY +EKLLGIE + +R+L E+ RI SH+L A VG
Sbjct: 62 VARVCGLCSITHAGAYTHGIEKLLGIETNKKIDYLRMLVVELDRIHSHMLANGHVAEVVG 121
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
+ F RE +M ER +G+R+ Y GGV +D E + + +
Sbjct: 122 YENLFMQTFRYREDVMDILERITGNRVQYDYQIIGGVARDFDKETEDFAREKLLTLKANT 181
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ + + F + +GT+ E A + +G + R SG D R Y + E+
Sbjct: 182 EKLIEFFENDYTFALKTKGVGTISKEMAEKFNAAGPIARASGLETDARAEYDYLPFEEVG 241
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
+ + GD + R +VR E+ S+++ ++ + V
Sbjct: 242 YKLQTRTEGDVWARNMVRFDEIMNSIEMCLNILDGIPEGEHRVKVKGR------------ 289
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
P GE + VEAP+GE YL + R +IR P YA+
Sbjct: 290 --------------------PDGETFVRVEAPRGECFYYLKGNKTKVLERVRIRVPTYAN 329
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ ++ L G + +D AI+ S D R
Sbjct: 330 IPVLKELFVGEKYSDAQAIVLSFDPCMSCTAR 361
>gi|329765842|ref|ZP_08257408.1| NADH dehydrogenase (quinone) [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|329137685|gb|EGG41955.1| NADH dehydrogenase (quinone) [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 378
Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats.
Identities = 121/400 (30%), Positives = 200/400 (50%), Gaps = 36/400 (9%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ K R T+N GPQHP + G +R+I+++DG+ + DP G +HRG EK+ E + ++
Sbjct: 11 LQKVDERIMTLNVGPQHPGS-GHMRIIVQIDGDFIVACDPDPGYVHRGEEKMAEYRNYIT 69
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+P+ +R N + Y L VE++LGIE+P R + +RV+ SE+ R + + +
Sbjct: 70 NIPHLERPVIHDSCNVLYPYVLGVEEILGIEVPERAKYVRVIASELNRCIYTMYWLAIYG 129
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+ +G T +W +RE L+ E+ +G+R+ A+F PGGV D+PP + + F
Sbjct: 130 IFLGHSTMFMWPAGDRELLIDLMEKMTGARVTHAHFVPGGVRNDLPPNFEDVCLRQVNYF 189
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ + + + N I R + G + +DA G +G ++R SG +DLRK +PY+ Y
Sbjct: 190 EKRIKEYAAIFYDNPILIARTKDTGILSRQDAIRLGTTGSVLRASGVDYDLRKKEPYDVY 249
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
ELD + K GD Y R V ++M ES IIRQ + ++ V +
Sbjct: 250 DELDVHTNVMKEGDSYARSKVPWLDMLESCNIIRQALQKMPKSGSVRVKLKPN------- 302
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEV----YAAVEAPKGEFGVYLISDGGNKPYRCK 356
P G+ Y VE+ +G G Y++SDG +PYR K
Sbjct: 303 ------------------------PKGKGLDTVYKRVESGRGSLGCYIVSDGKPEPYRVK 338
Query: 357 IRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + +L A+ +L KG +L ++ ++ SL+ E DR
Sbjct: 339 MSVGSFRNLIALPYLLKGEKLGNMPSVYWSLNYWPVEADR 378
>gi|57641150|ref|YP_183628.1| NADH dehydrogenase subunit D [Thermococcus kodakarensis KOD1]
gi|57159474|dbj|BAD85404.1| membrane bound hydrogenase, NiFe-hydrogenase large subunit 2
[Thermococcus kodakarensis KOD1]
Length = 394
Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats.
Identities = 123/394 (31%), Positives = 196/394 (49%), Gaps = 26/394 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ + FGPQH A +IL++DG VE+ + G LHRG EKL E + + +
Sbjct: 25 DKDTYELFFGPQHMAT-ENFSIILKMDGNRVEKAIVNPGFLHRGFEKLAEQRPYFTNIAL 83
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
R+ E+ Y++AV++++G E+P R IR + E+ R+ + + + ++G
Sbjct: 84 LLRICVPESDVPENIYSMAVDEIVGWEVPERAIWIRTVVLEMARLSAWMFWIMGFGNEIG 143
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIP-PELVEDIGCWCDSFPSA 183
T W RE+ M YE +G R++ Y PGGV +DIP + + + +
Sbjct: 144 LYTAGQWAAAYRERFMRLYEELTGGRVYHIYTVPGGVRRDIPGDKWLRQLRDTVEYLKGK 203
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L D ++L N I +R +G + + A +G +R G +D+RK PY Y +L
Sbjct: 204 LKDFDEILFDNYIMFERTEGVGVMDKKFALKHAVTGPNLRAVGVPYDVRKDDPYYLYDQL 263
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DF++P+ K GD R LVR EM + + I+ Q ++ GP D ++ R
Sbjct: 264 DFEVPVLKEGDSLARVLVRRYEMEQDLYILEQLLDMGP---PSGPYMVQDARLKALPR-- 318
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ P GE YA VE+ KG+FG +++SDG +KPYR +R P +
Sbjct: 319 ------------------FKPPAGEAYAHVESTKGDFGAFVVSDGTHKPYRVHVRGPSQS 360
Query: 364 H-LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H + +E L KG +LADV IL +LD ++DR
Sbjct: 361 HGVTVLEELLKGARLADVPVILKTLDNCPPDIDR 394
>gi|242399263|ref|YP_002994687.1| Membrane-bound hydrogenase MBH 2, subunit Mbh2L (NiFe hydrogenase
catalytic subunit) [Thermococcus sibiricus MM 739]
gi|242265656|gb|ACS90338.1| Membrane-bound hydrogenase MBH 2, subunit Mbh2L (NiFe hydrogenase
catalytic subunit) [Thermococcus sibiricus MM 739]
Length = 412
Score = 289 bits (739), Expect = 7e-76, Method: Composition-based stats.
Identities = 97/396 (24%), Positives = 180/396 (45%), Gaps = 31/396 (7%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
++ + GP HPA +R+ E++GE + +VD G HRG E + + +Q + +R
Sbjct: 5 TYYVPIGPIHPALKEPIRVEAEVEGEKIVKVDVKRGFAHRGIEYMGMKRNAIQTLYLSER 64
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ + ++ +A+ + EK LGIE P R Q IR + +E+ RI SH+L + A ++G +
Sbjct: 65 ICGICSISHPYAFVIGSEKALGIEAPPRAQYIRTIIAELERIHSHILWLGVIAHEIGFDS 124
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
W ++ REK++ E +G+R++ + + GGV +D+ + + + +
Sbjct: 125 LLFWTWKGREKVLDILEAITGNRINYSMYMIGGVRRDLKESHIRVLKDMITYYWEFTEHM 184
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
++ + ++K R + V + A G R +G D+R+ PY+ Y+++D
Sbjct: 185 KEVFLSDPVYKARTRGVAQVSKDVALKLNLVGPTARAAGLRMDIRQDIPYDAYADIDVKA 244
Query: 248 PI------GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ GD YD +VR+ E+ +S+ II C++ L + P
Sbjct: 245 VVPQDIVGEARGDAYDVTMVRIYEIEQSLDIIEYCIDNLPEGKI----------LAIPNY 294
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGG-NKPYRCKIRAP 360
+ + GE A EAP+GE Y DG + P K+ AP
Sbjct: 295 IALLNKI--------------KKTEGEGIGAHEAPRGEVVHYFRYDGTRDGPAVWKVIAP 340
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Y ++ + + G ++AD+ ++ +D DR
Sbjct: 341 SYNNINSWGYCLLGAEVADIPVVVAYIDPCMCCNDR 376
>gi|212704284|ref|ZP_03312412.1| hypothetical protein DESPIG_02339 [Desulfovibrio piger ATCC 29098]
gi|212672246|gb|EEB32729.1| hypothetical protein DESPIG_02339 [Desulfovibrio piger ATCC 29098]
Length = 362
Score = 288 bits (738), Expect = 8e-76, Method: Composition-based stats.
Identities = 116/393 (29%), Positives = 182/393 (46%), Gaps = 32/393 (8%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K +F + GP H A + L ++GE + +V+ G +HRG E L + ++ V
Sbjct: 2 SKLTTFNMPLGPVHVALEEPVYFNLTVEGETIRKVELTSGHVHRGMEALATQRNLIKNVT 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+R+ + + Y++AVE +LG+EIP+R +RVL EI R+ SHL N QA +
Sbjct: 62 LTERVCSLCSNSHSFTYSMAVENVLGMEIPVRAHYLRVLAEEIKRVASHLFNTAIQAHII 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + E RE + E G+RM+ A GGV D+PP+++ I D A
Sbjct: 122 GFKSLFMHVMEVREMMQDVKETVYGNRMNLASNCIGGVKCDVPPDMLTYILGMVDKVEPA 181
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+++I ++ N + R +G + EDA G G + RGSG A D+RK PY Y +L
Sbjct: 182 VDEIREIYATNAMVLGRTKGLGLLPREDALRLGVVGPVARGSGIAIDVRKDSPYAAYPDL 241
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+F + R +VR+ E+ ES K+IRQC R+ P+
Sbjct: 242 EFKSITHDGCCIHSRTMVRLDEIFESFKLIRQCCERMPEGPHCVPMRQIHT--------- 292
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E A EAP+GE Y+ ++G + P R K R P Y
Sbjct: 293 -----------------------AEACARSEAPRGEVFYYIRTNGTDIPARLKWRVPSYM 329
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +A+ + + +ADV+ I S+D +R
Sbjct: 330 NWEALGVMMRDCAVADVALITNSIDPCVSCTER 362
>gi|315230618|ref|YP_004071054.1| NADH-ubiquinone oxidoreductase subunit D [Thermococcus barophilus
MP]
gi|315183646|gb|ADT83831.1| NADH-ubiquinone oxidoreductase chain D [Thermococcus barophilus MP]
Length = 391
Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats.
Identities = 131/394 (33%), Positives = 203/394 (51%), Gaps = 26/394 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ + FGPQH A +IL++DG V + + G LHRG EKL E + + +
Sbjct: 22 DKDTYELFFGPQHMAT-ENFSIILKMDGHRVVKAIANPGFLHRGFEKLAELRPWYTNIAL 80
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
R+ P E Y++AVE+++G E+P R Q IR + E+ R+ ++L A +G
Sbjct: 81 LLRICVPEPDVPEMIYSMAVEEIMGWEVPERAQWIRTVVLEMARVSAYLFWTMGMAFKLG 140
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIP-PELVEDIGCWCDSFPSA 183
T W RE+ M +E +G+R++ Y PGGV +DIP + + + + S
Sbjct: 141 VYTAGQWAAAYRERFMALFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYVKSK 200
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L D L+ N I +R IG + + A G +G +R +G +D+R++ PY Y EL
Sbjct: 201 LPDFDHLIFENYITFRRMEGIGVMDKKFALEEGVTGPNLRATGVPYDVRRADPYLLYPEL 260
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DF++P+ K GD R L+R E+ + + I+ Q + GP DP++ R
Sbjct: 261 DFEVPVLKEGDALSRALIRRYELEQDLYILEQLLEMGP---PSGPYKIQDPRLKNLPR-- 315
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ VP G+ +A VE+ KG+FG Y++SDGGNKPYR +IR P A
Sbjct: 316 ------------------FKVPAGDAFAHVESTKGDFGAYVVSDGGNKPYRVQIRGPSIA 357
Query: 364 H-LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H ++ +E L G ++ADV IL SLD ++DR
Sbjct: 358 HGIRVLEQLLVGARIADVPVILVSLDNCPPDIDR 391
>gi|255566332|ref|XP_002524152.1| NADH-plastoquinone oxidoreductase 49 kD subunit, putative [Ricinus
communis]
gi|223536570|gb|EEF38215.1| NADH-plastoquinone oxidoreductase 49 kD subunit, putative [Ricinus
communis]
Length = 332
Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats.
Identities = 133/340 (39%), Positives = 182/340 (53%), Gaps = 8/340 (2%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
GP HP+ H VLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +PY R DY+A
Sbjct: 1 MGPHHPSMH-VLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLA 59
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWG 132
M E E L I++P R IRV+ E+ RI SHLL + +GA TP +
Sbjct: 60 TMFTEAITVNGPELLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMAVIGAQTPFFYI 119
Query: 133 FEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLT 192
F ERE +E A+ RM YFR GGV D+P ++ +CD F + + + L+T
Sbjct: 120 FRERELGYDLFEAATSMRMMHNYFRIGGVAADLPHGWIDKCLDFCDYFLTGITEYQKLIT 179
Query: 193 GNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKH 252
N IF +R +G V E+A WG SG M+R S WDL + YECY E D+++ K
Sbjct: 180 RNPIFLERFEGVGIVGAEEAINWGLSGPMLRASRVQWDLCQVDHYECYDEFDWEVQWQKE 239
Query: 253 GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLI 312
GD RYLVR+ EM ES+KII+Q + + G GP + + D + +
Sbjct: 240 GDSLARYLVRIGEMMESIKIIQQVLEGIPG----GPYENLETRRFER---DPEWNNFEYQ 292
Query: 313 HHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKP 352
K + + +P E+Y VEAPKGE ++LI D P
Sbjct: 293 FISKKTSPTFELPKQEIYVRVEAPKGELEIFLIGDQSGFP 332
>gi|221126978|ref|XP_002167534.1| PREDICTED: similar to predicted protein, partial [Hydra
magnipapillata]
Length = 262
Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats.
Identities = 164/264 (62%), Positives = 209/264 (79%), Gaps = 4/264 (1%)
Query: 133 FEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLT 192
F+++E+LM FYERASG+R+HAAY RPGGV DIP L++DI + F ++++ ++LT
Sbjct: 3 FDKKEELMEFYERASGARLHAAYVRPGGVALDIPIGLLDDIWHFMSKFGQRIDELEEMLT 62
Query: 193 GNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKH 252
NRI+KQR V+IG V E+A +G SGVM+RGSG WDLRKSQPY+ Y +++FD+PIGK+
Sbjct: 63 HNRIWKQRLVDIGVVSTENALSYGMSGVMLRGSGFKWDLRKSQPYDAYDKVEFDVPIGKN 122
Query: 253 GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLI 312
GDCYDRYL R+ EMR+SV+I+ QC+N++ G V D KI PPKRA+MK SME+LI
Sbjct: 123 GDCYDRYLCRVEEMRQSVRIVEQCLNKM----PPGEVRIDDAKISPPKRAEMKESMEALI 178
Query: 313 HHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLC 372
HHFKLYTEGY VP GE Y A+EAPKGE GVYL+SDG NKPYRCKIRAPG+ HL +++++
Sbjct: 179 HHFKLYTEGYSVPPGETYTAIEAPKGEMGVYLVSDGSNKPYRCKIRAPGFYHLASIDYMS 238
Query: 373 KGHQLADVSAILGSLDIVFGEVDR 396
KGH LADV AI+G+ DIVFGEVDR
Sbjct: 239 KGHMLADVVAIIGTQDIVFGEVDR 262
>gi|220929109|ref|YP_002506018.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Clostridium
cellulolyticum H10]
gi|219999437|gb|ACL76038.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Clostridium
cellulolyticum H10]
Length = 530
Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats.
Identities = 91/388 (23%), Positives = 162/388 (41%), Gaps = 31/388 (7%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
F + GP H + GE + ++ + +HRG EKL E + +++ + + +R+
Sbjct: 172 FEVPVGPVHAGIIEPGHFRFSVAGEPIINLEAKLYYVHRGLEKLCENQHYMKVLLFSERI 231
Query: 69 DYVAPMNQEHAYALAVEKLLGIE-IPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
A+ A+EKL GI IP R RVL++E+ RI HL ++ +D +
Sbjct: 232 SGDETFTNSLAFCQAIEKLNGITYIPERAVYSRVLFAELERICGHLGDIQGLCVDTAYIF 291
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
P R + + E+ +GSR +PGG+ +D + I + +
Sbjct: 292 PSGQFAMMRRWIQLLNEQLTGSRFLRNTNKPGGLRRDFVRSNEKIILECINKLDKEFKET 351
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
++ N +F R + G ++ A G R SG D+RK PY YS+L F++
Sbjct: 352 VAIIKNNGMFIDRVEHTGILENSIAVDLNVVGPGGRASGVKTDVRKEFPYAAYSKLKFNV 411
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
P + D R V++ E+ ES+ II+Q + ++ + V
Sbjct: 412 PEHSNCDVNCRMNVKIEEVIESINIIKQVLEKMPEEGPVSV------------------- 452
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
I K Y+ + E+P+GE ++++ N +R K+R P + + A
Sbjct: 453 ---DIGELKPYSY--------AFGMTESPRGENLHFVMTGENNTIFRYKVRTPSFCNWPA 501
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ + L D I S ++ + D
Sbjct: 502 LCHAVNTNTLTDFPLINKSFNLSYAGND 529
>gi|212223634|ref|YP_002306870.1| NADH dehydrogenase subunit D [Thermococcus onnurineus NA1]
gi|212008591|gb|ACJ15973.1| nuoD NADH dehydrogenase I, subunit D [Thermococcus onnurineus NA1]
Length = 391
Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats.
Identities = 128/394 (32%), Positives = 206/394 (52%), Gaps = 26/394 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ + FGPQH A +IL++DG V + + G LHRG EKL E + + +
Sbjct: 22 DKDTYELFFGPQHMAT-ENFSIILKMDGHRVVKAIANPGFLHRGFEKLAEYRPWHTNIAL 80
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
R+ P E Y++AV++++G E+P R Q IR E+ R+ ++L + + +G
Sbjct: 81 LLRICVPEPDVPEAIYSMAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLG 140
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIP-PELVEDIGCWCDSFPSA 183
T W RE+LM +E+ +G+R++ Y PGGV +DIP + + + + S
Sbjct: 141 VYTAGQWAAAYRERLMALFEQLTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIRSK 200
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L+D +L+ N + +R IG + + A G +G +R +G +D+R++ PY Y EL
Sbjct: 201 LSDFDNLVFENYVAHRRLEGIGVMDKKFALAEGVTGPNLRATGVPYDVRRADPYLLYPEL 260
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DF++P+ K GD R L+R E+ + + I+ Q + GP DPK+ R
Sbjct: 261 DFEVPVLKEGDALARALIRRFELEQDLYILDQLLEMGP---PSGPYKVEDPKLKNLPR-- 315
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ VP G+ +A VE+ KG+FG Y++SDG +KPYR +IR P A
Sbjct: 316 ------------------FKVPAGDAFAHVESTKGDFGAYVVSDGKHKPYRVQIRGPSIA 357
Query: 364 H-LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H ++ +E L G ++ADV IL SLD ++DR
Sbjct: 358 HGVRVLEQLLVGARIADVPVILMSLDNCPPDIDR 391
>gi|15643972|ref|NP_229021.1| NADH dehydrogenase subunit D [Thermotoga maritima MSB8]
gi|170289383|ref|YP_001739621.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2]
gi|4981769|gb|AAD36291.1|AE001778_12 NADH dehydrogenase, 49 kDa subunit, putative [Thermotoga maritima
MSB8]
gi|170176886|gb|ACB09938.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2]
Length = 368
Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats.
Identities = 125/390 (32%), Positives = 202/390 (51%), Gaps = 25/390 (6%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
+ FGP HP HG + + ++G+IV++ P G LHRG EKL+E + + + R
Sbjct: 3 ETKLFFGPNHPGMHGNFSVHMYVEGDIVKKARPVPGFLHRGFEKLMERRYWYSNISLIPR 62
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ P E YA+A+EK+ +E+P R Q IR++ E+ RI +H+ V +G T
Sbjct: 63 ICVPEPDINEICYAMAIEKIAKVEVPERAQWIRMIVLELARIANHIWTVGGIGGPLGLYT 122
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
WG +R++++ +E SG+R++ Y PGGV +++ P++ E I D S L D
Sbjct: 123 ASHWGVADRDRILDIFEALSGARVYHMYIIPGGVRKNMTPKIEEMIWKTLDYIESRLPDY 182
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+L+ NRI R + E A G +GV +R +G +D+RK PY Y ++F++
Sbjct: 183 ENLIFKNRIVHSRLRGRLILTREQAVEMGVTGVGLRATGVEYDIRKVDPYLFYDRVEFEV 242
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
P GD + R ++ E+ +S+KIIRQ + ++ ++V VP R + R
Sbjct: 243 PTATDGDAFSRVYLKFKEIPQSIKIIRQALEKMPQADRVN---------VPIGRGNGLRR 293
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH-LQ 366
+ VP G YA VE+ +GE+G +++SDG NKPYR +R Y L
Sbjct: 294 I---------------VPKGMAYAHVESTRGEYGFFVVSDGKNKPYRVAVRGASYPQGLY 338
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+E G ++ DV L ++D+ E+DR
Sbjct: 339 GIEKYLPGTRIEDVPIWLATMDVCAPEIDR 368
>gi|222100329|ref|YP_002534897.1| NADH dehydrogenase [Thermotoga neapolitana DSM 4359]
gi|221572719|gb|ACM23531.1| NADH dehydrogenase [Thermotoga neapolitana DSM 4359]
Length = 368
Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats.
Identities = 122/390 (31%), Positives = 199/390 (51%), Gaps = 25/390 (6%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
+ FGP HP HG + + ++G+IV++ P G LHRG EKL+E + + + R
Sbjct: 3 ETKLFFGPNHPGMHGNFSVHMYVEGDIVKKARPVPGFLHRGFEKLMERRYWYSNISLIPR 62
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ P E YA+AVEK+ IE+P R Q IR++ E+ RI +H+ V +G T
Sbjct: 63 ICVPEPDINEICYAMAVEKIAKIEVPERAQWIRMIVLELARIANHIWTVGGIGGPLGLYT 122
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
WG +R++++ +E +G+R++ Y GGV +++ P++ + I D S L D
Sbjct: 123 ASYWGVADRDRILDIFEALTGARIYHMYIIIGGVRKNMTPKVEDMIWKTLDYIESRLPDY 182
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+L+ NRI R + E A G +GV +R +G +D+RK PY Y ++F++
Sbjct: 183 ENLIFKNRIVHSRLRGRLILTREQAMEMGVTGVGLRATGVEYDIRKVDPYLFYDRVEFEV 242
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
P GD + R ++ E+ +S+KIIRQ + ++ ++V VP + R
Sbjct: 243 PTATEGDAFSRVYLKFKEIPQSIKIIRQALEKMPQSDRVN---------VPAGKGSGLRR 293
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH-LQ 366
+P G YA VE+ +GE+G +++SDG NKPYR +R Y L
Sbjct: 294 ---------------VIPKGMAYAHVESTRGEYGFFVVSDGKNKPYRVAVRGASYPQGLY 338
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+E G ++ DV L ++D+ E+DR
Sbjct: 339 GIEKYLPGTRIEDVPIWLATMDVCAPEIDR 368
>gi|118581193|ref|YP_902443.1| NADH dehydrogenase (ubiquinone), 30 kDa subunit [Pelobacter
propionicus DSM 2379]
gi|118581201|ref|YP_902451.1| NADH dehydrogenase (ubiquinone), 30 kDa subunit [Pelobacter
propionicus DSM 2379]
gi|118503903|gb|ABL00386.1| NADH dehydrogenase subunit C [Pelobacter propionicus DSM 2379]
gi|118503911|gb|ABL00394.1| NADH dehydrogenase subunit C [Pelobacter propionicus DSM 2379]
Length = 557
Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats.
Identities = 105/388 (27%), Positives = 164/388 (42%), Gaps = 33/388 (8%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIET-KTFLQAVPYFDRLD 69
+ FGP HP L +DGE V + ++HRG EKL E+ + +R+
Sbjct: 173 VPFGPFHPTLDEPEHFRLYVDGEFVRGCEYRGFMVHRGIEKLSESVLGYNDVPMMAERIC 232
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ A+ AVE G+ +P R + IR + EI R+ SH + V VG T
Sbjct: 233 GICGCVHSLAFCQAVENGAGVIVPPRAEFIRTIMLEIERLHSHPMWVGLACHLVGFDTLF 292
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ + RE +M E+ +G+R GGV D PEL+ + D S +
Sbjct: 293 MQAWRIREPIMWLAEKITGNRKTYGLGIIGGVRWDFTPELIAETRAVLDKLESEWRQVVA 352
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
++ ++ R +G G G + RG G D R+ PY Y +DF +
Sbjct: 353 AVSKDKNIMARTSGVGMADKALCKEMGLVGPVARGGGVDIDARRDHPYAAYDRVDFKVIT 412
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
D + R +VRM+E+ ES+ IIRQC +++ V +
Sbjct: 413 HNTADVWGRVVVRMLEVFESINIIRQCFDKMPQGPLVADI-------------------- 452
Query: 310 SLIHHFKLYTEGYHVPVGE-VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
+P G Y ++EAP+GE + I+ N+P R + RAP Y +LQ +
Sbjct: 453 -----------TTELPAGRVGYTSIEAPRGESHHFAITGDDNRPRRWRARAPTYQNLQGI 501
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ K ++AD+ LG +D DR
Sbjct: 502 PAMIKDQRIADMQISLGGIDPCMSCTDR 529
>gi|269215529|ref|ZP_06159383.1| carbon monoxide-induced hydrogenase, large subunit [Slackia exigua
ATCC 700122]
gi|269131016|gb|EEZ62091.1| carbon monoxide-induced hydrogenase, large subunit [Slackia exigua
ATCC 700122]
Length = 362
Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats.
Identities = 101/392 (25%), Positives = 163/392 (41%), Gaps = 32/392 (8%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
++ I FGPQHP L L L ++ E V P IG +HRG EKL+++ + V
Sbjct: 2 GKATVIPFGPQHPVLPEPLHLDLVVEDEHVIEAIPQIGFIHRGLEKLVDSHDIHKFVYVA 61
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
+R+ + Y VEK +G+EIP R + +RV+ E+ R+ SHLL + A G
Sbjct: 62 ERICGICSFGHSLGYVETVEKAMGLEIPKRAEYLRVIMHELSRMHSHLLWMGLAADAFGF 121
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ + + RE+++ ++ +G R+ +Y GGV+ DI ++ I +
Sbjct: 122 ESLFMHTWRLRERVLDIFQETTGGRVILSYVNVGGVNSDIDGTVLSTIITRLEGIKDEYR 181
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
++ + + K R V IG + +DA G R S A+D R DF
Sbjct: 182 EVLNTFLKDSSVKSRLVGIGHLSRDDAAATSMVGPFGRASNIAYDARMLGSGAYGDLEDF 241
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ GDCY R VR +E+ +S+ II + + ++
Sbjct: 242 QPILDDQGDCYARVKVRGLEVLQSIDIIEELIAKIP------------------------ 277
Query: 306 RSMESLIHHFKLYTEGYHVPVG-EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
H G E +E P+GE Y +G R ++R P +
Sbjct: 278 -------HDGIGERTKLRPADGVEAVNLLEQPRGECFYYARGNGSKNLDRMRMRTPTTQN 330
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
L M +G LADV I+ ++D +R
Sbjct: 331 LAGMVKALEGSDLADVPNIILTIDPCISCSER 362
>gi|289522405|ref|ZP_06439259.1| carbon monoxide-induced hydrogenase, large subunit [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289504241|gb|EFD25405.1| carbon monoxide-induced hydrogenase, large subunit [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 411
Score = 286 bits (731), Expect = 6e-75, Method: Composition-based stats.
Identities = 106/403 (26%), Positives = 183/403 (45%), Gaps = 31/403 (7%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + +++TI GP H + L++DGE + V G +HRG E + + +Q
Sbjct: 1 MAIGEGKTYTIPIGPVHVGLKEPITAWLQVDGERIVDVRIRPGAIHRGIEYMARERNPIQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ +R+ + ++ AVE I +P R + IR + E+ RI SH+L
Sbjct: 61 VIYLAERICGICSFAHIISFVRAVEDAASIPVPPRAKYIRTILLELERIHSHILWAGVAC 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
G + G REK+M E +G+R++ GGV +DI ++ E I + +
Sbjct: 121 YTFGYDSAFNLGMLLREKVMDVLEAMTGNRVNYGVGTIGGVRRDITFQVAEAIKEMVEYY 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ + +T + I K R N+G + +DA + G R SG DLR S PYE Y
Sbjct: 181 KREFSYFYNAVTEDPIVKARMRNVGVLSEKDAVRYCAVGPTARASGLRVDLRWSSPYEAY 240
Query: 241 SELDFDIPIGK------HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDP 294
+L + + + GD +DR+ VR+ME+ +S++II QC++ L GP+
Sbjct: 241 EDLKVEPIVPQDYFGNAQGDVFDRFFVRVMEVYQSLEIIEQCMDGL----PEGPIMH--- 293
Query: 295 KIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLI-SDGGNKPY 353
PK A + +++ G +++EAP+G+ + +
Sbjct: 294 ---EPKPAKLLNLLKTA--------------DGVGQSSIEAPRGDDTHVIKLTQAQENVT 336
Query: 354 RCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
K+RAP YA+ + + K ++AD I+ S+D ++R
Sbjct: 337 WWKVRAPTYANAMSWPIMFKDQEIADAPLIINSIDPCISCMER 379
>gi|288575151|ref|ZP_06393508.1| NADH-ubiquinone oxidoreductase chain 49kDa [Dethiosulfovibrio
peptidovorans DSM 11002]
gi|288570892|gb|EFC92449.1| NADH-ubiquinone oxidoreductase chain 49kDa [Dethiosulfovibrio
peptidovorans DSM 11002]
Length = 413
Score = 285 bits (730), Expect = 8e-75, Method: Composition-based stats.
Identities = 98/400 (24%), Positives = 173/400 (43%), Gaps = 31/400 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+++++ + GP H + L+++GE ++ G +HRG E + + +Q +
Sbjct: 2 SETKTYKLPIGPVHVGLKEPITAWLDIEGEHIKDAVIRPGAIHRGVEFMARERNPIQVIY 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+R+ + + A+ AVE IE+PIR Q IR + E+ RI SH+L +
Sbjct: 62 LAERVCGICSFSHAIAFVKAVEDAAQIEVPIRAQYIRSMVLELERIHSHILWSGVACYTI 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + G REK+M E SG+R++ A GGV D+ P +V + + +
Sbjct: 122 GFDSAFHLGMMLREKVMDVLEALSGNRVNYAVTTVGGVRWDVTPAVVRTVMDMIHYYRNE 181
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + + K R ++G + E A + G RGSG D+R S PY+ Y ++
Sbjct: 182 FASFYEAAINDPVVKARLRDVGVLTTEQAIKYCALGPTSRGSGVRADVRWSAPYDAYCDI 241
Query: 244 DFDIPI------GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIV 297
+ + HGD YDR+LVR+ E+ +S+ I+ + + L + + V
Sbjct: 242 HVEPVVPQDYTGEVHGDVYDRFLVRVYEVLQSLDILEKIMEGLPEGSITFEPKVNKLLTV 301
Query: 298 PPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGN-KPYRCK 356
K G Y +EAP+G+ + K
Sbjct: 302 LKKA------------------------EGVGYGCIEAPRGDDTHAVGLKAQQENVQWWK 337
Query: 357 IRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+RAP Y++ + + K ++LAD I+ S+D ++R
Sbjct: 338 VRAPTYSNAVSWPLMFKDNELADAPLIINSIDPCISCMER 377
>gi|124027082|ref|YP_001012402.1| NADH dehydrogenase subunit D [Hyperthermus butylicus DSM 5456]
gi|123977776|gb|ABM80057.1| NADH-quinone oxidoreductase chain 4 [Hyperthermus butylicus DSM
5456]
Length = 402
Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats.
Identities = 129/390 (33%), Positives = 191/390 (48%), Gaps = 8/390 (2%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
R + GPQHPA+ G +RLI+ LDG+ + RVDP IG +HR EKL E + +++ V +
Sbjct: 21 RLVELYIGPQHPAS-GHMRLIVYLDGDRIVRVDPDIGYVHRTMEKLSEIREWVRIVGLVE 79
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+ + N + AVEKLLGIE P R + +R + E+ RI SHL + + +
Sbjct: 80 RMTIIDSCNVTLPFVEAVEKLLGIEPPPRARYLRTILCEVNRIASHLYGLGLGGIFLNHS 139
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
T +W F +RE + +G+R+ Y PGGV +D+P ++ L +
Sbjct: 140 TMFMWAFGDREVFIHLATLLTGARLTHTYAIPGGVRRDLPQVFRDEFEKAKRYMLRRLKE 199
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
D+ N + + R N+G + A G +G +R SG +D R + Y YSELDF
Sbjct: 200 YEDIFVKNPVVRGRLENVGVLPKHKAIELGVTGPNLRASGVVYDARLTG-YAAYSELDFT 258
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+G+ GD +R LVR+ E++ S+ +I Q + RL K+VPP +MK
Sbjct: 259 PVVGEAGDALERILVRVEEIKVSLDLIEQALKRLPEGPF---FHERFAKMVPP---NMKH 312
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
E GE+ E GE Y++S G KPYR +I P + ++
Sbjct: 313 WFEKGRVKLPGGYVRLRPARGEILTRAEMGHGEITYYIVSKGEFKPYRVRIITPSFRNVI 372
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
L GH L D+ AI GS+D E DR
Sbjct: 373 LFMTLPVGHTLMDLPAIYGSIDYFPPESDR 402
>gi|282163148|ref|YP_003355533.1| Ech hydrogenase subunit E [Methanocella paludicola SANAE]
gi|282155462|dbj|BAI60550.1| Ech hydrogenase subunit E [Methanocella paludicola SANAE]
Length = 360
Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats.
Identities = 116/390 (29%), Positives = 183/390 (46%), Gaps = 32/390 (8%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
TI FGPQHP LRL L DGE+++ VD G +HRG EK E + +A +R
Sbjct: 2 RTTIQFGPQHPVWIEPLRLKLTTDGELIKDVDLEAGYVHRGLEKKFEW-DYNKAAYLSER 60
Query: 68 LDYVAPMNQEHAYALAVE-KLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
+ + + + L VE + G+E+P R +IR + E+ R+ SH L + +G
Sbjct: 61 VCAICTQHHSTCFCLGVEGTMAGLELPRRAAIIRTIMLELERLHSHFLAIGLTLEAIGFE 120
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
+ F RE+++ +ER +G+R+ GGV ++I PE+ ++I +CD ++
Sbjct: 121 NMFMLCFRHREQVLDVFERTTGNRVLHGINIVGGVTRNIGPEMAKEILDFCDDIEKRAHE 180
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
I ++ + KQR +G + + A G G + RGS +D+R + P+ Y E+
Sbjct: 181 IERIIVSSYTIKQRMQGVGVMTEKMAKELGVVGPVARGSNVPYDVRHAAPHLLYREVKVT 240
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ K GDC+ R LVR+ E+ +S+ +IRQ V L G
Sbjct: 241 PIVEKDGDCWARSLVRVRELFQSIDLIRQLVPLLDGTP---------------------- 278
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+L+ + +P GE A VEAP+GE Y+ + R K+R Y +
Sbjct: 279 --------DELFAKSKAMPEGENIARVEAPRGELFYYVRGKKSKELDRVKVRTSTYGNGL 330
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ L KG +ADV I + D G DR
Sbjct: 331 GIAPLIKGSHIADVGLITITFDPCIGCFDR 360
>gi|301061300|ref|ZP_07202082.1| respiratory-chain NADH dehydrogenase, 49 Kd subunit [delta
proteobacterium NaphS2]
gi|300444619|gb|EFK08602.1| respiratory-chain NADH dehydrogenase, 49 Kd subunit [delta
proteobacterium NaphS2]
Length = 315
Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats.
Identities = 128/319 (40%), Positives = 190/319 (59%), Gaps = 4/319 (1%)
Query: 78 HAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEERE 137
+Y L+VE L GI++P R Q IR++ +E RI +HL+ + A DVGA++P + +RE
Sbjct: 1 MSYVLSVENLAGIKVPDRAQFIRIMLAEFFRISNHLMWLGELAHDVGAMSPIFYTVTDRE 60
Query: 138 KLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIF 197
K+M ER +G+R+H A+FR GG+ D+P + + FP + LLT N IF
Sbjct: 61 KIMDIIERITGARLHPAWFRLGGLAADLPEGWEAPVRDFIRVFPKRIRAYESLLTKNPIF 120
Query: 198 KQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYD 257
+ R V +G + EDA G +G ++RGSG WD+RK+ PY Y DF++P GD Y
Sbjct: 121 RGRTVGVGHLSREDAISRGITGPVLRGSGLNWDVRKNMPYSGYEVFDFEVPCFSEGDAYA 180
Query: 258 RYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKL 317
RY VRM EMR+S++II Q + + GP D + V P++ + + +E+LIHHF
Sbjct: 181 RYRVRMEEMRQSLRIIEQAADNM----PSGPYITEDYRYVTPRKDETLKDIETLIHHFIN 236
Query: 318 YTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQL 377
+ G +P GE Y E+ +GE G Y++SDGG YR +IR P +AH+QAM + G +
Sbjct: 237 VSRGPKIPKGESYRTTESARGEQGYYVVSDGGTTAYRMRIRTPDFAHIQAMPLMAVGGSI 296
Query: 378 ADVSAILGSLDIVFGEVDR 396
+D+ I+GS+D V + DR
Sbjct: 297 SDLIPIIGSVDYVMPDTDR 315
>gi|146739155|gb|ABQ42614.1| HycE [Enterobacter aerogenes]
Length = 522
Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats.
Identities = 92/376 (24%), Positives = 159/376 (42%), Gaps = 32/376 (8%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVPYF 65
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 178 KNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLS 237
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DR+ + AY +VE +GI +P R Q+IR + E+ R+ SHLLN+ G
Sbjct: 238 DRVCGICGFAHSTAYTTSVENAMGIVVPERAQMIRAILLEVERLHSHLLNLGLACHFTGF 297
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ + F RE M E +G+R GG+ +D+ E + +
Sbjct: 298 DSGFMQFFRVRETSMKMAEILTGARKTYGMNLIGGIRRDLLKEDMIQTRALAQQMRRDVQ 357
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
++ D+L +QR V IG + + A + G M+R SG A D R P+ Y L
Sbjct: 358 ELVDMLLSTPNMEQRTVGIGRLDPQIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPM 417
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
++ + D R VR+ E+ ++ +I ++ L G GP++ +P + A
Sbjct: 418 EVHSEQGCDVISRLKVRINEVYTALNMIDFGLDNLPG----GPLAVEGFTYIPHRFAL-- 471
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
EAP+G+ + ++ K YR + RA YA+
Sbjct: 472 -------------------------GFSEAPRGDDIHWSMTGDNQKLYRWRCRAATYANW 506
Query: 366 QAMEFLCKGHQLADVS 381
+ ++ +G+ ++D
Sbjct: 507 PTLRYMLRGNTVSDAP 522
>gi|242399879|ref|YP_002995304.1| Membrane-bound NADP+-reducing complex MBX, subunit MbxL
(dehydrogenase subunit) [Thermococcus sibiricus MM 739]
gi|242266273|gb|ACS90955.1| Membrane-bound NADP+-reducing complex MBX, subunit MbxL
(dehydrogenase subunit) [Thermococcus sibiricus MM 739]
Length = 391
Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats.
Identities = 132/394 (33%), Positives = 200/394 (50%), Gaps = 26/394 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ ++ + FGPQH A LIL+LDG V + + G LHRG EKL E + + +
Sbjct: 22 EKDTYELFFGPQHMAT-ENYSLILKLDGHRVVKAIANPGFLHRGFEKLAELRPWYTNIAL 80
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
R+ P E Y++AV++L+G E+P R Q IR + E+ R+ S+L + +G
Sbjct: 81 LLRVCVPEPDVPEAVYSMAVDELVGWEVPERAQWIRTVVLEMARVTSYLFWTMGLSFKLG 140
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIP-PELVEDIGCWCDSFPSA 183
T W RE+ M +E+ +G+R++ Y PGGV +DIP + + + +
Sbjct: 141 VYTAGQWAAAYRERFMALFEQLTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYLKDK 200
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L D ++L N I R IG + + A G +G +R +G D+R+ PY Y EL
Sbjct: 201 LKDFDNILFQNYITYNRLEGIGVMDKKFALAEGVTGPNLRATGVKADVRRLDPYLLYPEL 260
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DF++P+ K GD R LVR E+ + + I+ Q + GP DPK+ R
Sbjct: 261 DFEVPVLKEGDSLARALVRRFEIEQDLYILEQLLEMGP---PDGPYKVEDPKLKALPR-- 315
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ VP G+ YA VEA G+FG Y++SDGGNKPYR +IR P +
Sbjct: 316 ------------------FKVPAGDAYAHVEATGGDFGAYVVSDGGNKPYRVQIRGPSIS 357
Query: 364 H-LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H ++ +E L G ++ADV IL +L ++DR
Sbjct: 358 HGIRVIEQLLVGARIADVPVILMTLGNCPPDIDR 391
>gi|145592316|ref|YP_001154318.1| NADH dehydrogenase subunit D [Pyrobaculum arsenaticum DSM 13514]
gi|145284084|gb|ABP51666.1| NADH dehydrogenase (ubiquinone) [Pyrobaculum arsenaticum DSM 13514]
Length = 407
Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats.
Identities = 126/394 (31%), Positives = 200/394 (50%), Gaps = 8/394 (2%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ K R I +GPQHP++ G R I+E+DG+IV V P G +HR EKL ET+ ++Q +
Sbjct: 22 EGKRRILDIFWGPQHPSS-GHTRFIVEVDGDIVVNVTPDPGYVHRTMEKLGETRHWIQNI 80
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P F+RL +N AYA+AVE++ +++ R Q +RV+ +E+ RI +HL ++ A+
Sbjct: 81 PLFERLSLPDAINVTWAYAMAVERVAKLDVSPRAQYLRVIMAELSRISTHLYDLGLHAIM 140
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+G+ T +WGF RE L+ + SGSR + PGGV P E + D
Sbjct: 141 IGSSTGFMWGFGLRELLVQLWAMVSGSRTTPTWVLPGGVRTAPPDAFYEQTKGFLDYLEK 200
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+++ L+ N + R ++G + EDA +G RGSG WD R+ Y Y E
Sbjct: 201 KIDEFVRLVVKNPVGYYRLKDVGYLSKEDAARLMATGPGARGSGIDWDARRVYKYGIYDE 260
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++D+ + GD R +VR+ E+++S KIIRQ ++R+ + V + +PPK+
Sbjct: 261 FEWDVCVEDAGDSLARTMVRICEIQQSAKIIRQALDRVPKDGPL--VGEAVLHRIPPKQR 318
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ + L + +G + ++ DG KPYR +I P +
Sbjct: 319 EKANEIIRLGALYTTMLPQGEGVGVTEGG-----RGRYFFHVFGDGTEKPYRVRISTPSW 373
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L+AM G +L D+ AI GS E DR
Sbjct: 374 QNLRAMIRAFIGARLMDLPAIYGSFGYFPPEQDR 407
>gi|254168068|ref|ZP_04874916.1| Respiratory-chain NADH dehydrogenase, 49 Kd subunit domain protein
[Aciduliprofundum boonei T469]
gi|254168104|ref|ZP_04874951.1| Respiratory-chain NADH dehydrogenase, 49 Kd subunit domain protein
[Aciduliprofundum boonei T469]
gi|289596052|ref|YP_003482748.1| NADH dehydrogenase (quinone) [Aciduliprofundum boonei T469]
gi|197622870|gb|EDY35438.1| Respiratory-chain NADH dehydrogenase, 49 Kd subunit domain protein
[Aciduliprofundum boonei T469]
gi|197623111|gb|EDY35678.1| Respiratory-chain NADH dehydrogenase, 49 Kd subunit domain protein
[Aciduliprofundum boonei T469]
gi|289533839|gb|ADD08186.1| NADH dehydrogenase (quinone) [Aciduliprofundum boonei T469]
Length = 375
Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats.
Identities = 131/402 (32%), Positives = 200/402 (49%), Gaps = 40/402 (9%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+ F + GPQHP G L +DG+ + + + H G LHRG EKL+E +T+ V
Sbjct: 2 KEFELFIGPQHPGITGNFMYHLWVDGDTIVKAEAHPGYLHRGFEKLMEKRTWQMNVALIP 61
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+ P E YA+AVE L+ +IP R + IR + E+ R+ SHLL + A +G
Sbjct: 62 RICVPEPDVNEAVYAMAVESLMDWDIPERAKYIRTIVLEMARLSSHLLTLGGYAGAIGLY 121
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
T W +R+ L+ +E+ +G+R++ + PGGV D+P + + + S L
Sbjct: 122 TVGQWTIGDRDYLLDLFEQLTGARVYHIFIFPGGVRWDLPDGFLRKLEKVLNYLESRLEF 181
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
LL N +F +R ++G V + A WG +G +R G +D+RK PY Y +LDF+
Sbjct: 182 YDKLLFANEVFFRRAPDVGVVPKDKAIEWGITGPNLRACGYEYDVRKVDPYAAYPDLDFE 241
Query: 247 IPI----------GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKI 296
IP G DCY R +VR +E+ +S++I+RQ + ++
Sbjct: 242 IPHYPKFGDFEVLGHGCDCYSRMIVRRLEIEQSIRILRQVIKKIPDGP------------ 289
Query: 297 VPPKRADMKRSMESLIHHFKLYTE-GYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRC 355
H KL + VP G YA VE+ KGE+G ++ISDGG PYR
Sbjct: 290 ----------------HTLKLPNPIAWKVPAGYAYARVESSKGEYGYFVISDGGKMPYRV 333
Query: 356 KIRAPGYAH-LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+R P Y H + E + KG +AD S + SLD+ +++R
Sbjct: 334 HVRGPSYTHGINVTETIAKGLNIADFSQTIFSLDVCAPDIER 375
>gi|326202174|ref|ZP_08192044.1| NADH dehydrogenase (quinone) [Clostridium papyrosolvens DSM 2782]
gi|325987969|gb|EGD48795.1| NADH dehydrogenase (quinone) [Clostridium papyrosolvens DSM 2782]
Length = 530
Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats.
Identities = 93/388 (23%), Positives = 164/388 (42%), Gaps = 31/388 (7%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
F + GP H + GE + ++ + +HRG EKL E + +++A+ + +R+
Sbjct: 172 FEVPVGPVHAGIIEPGHFRFSVAGEPIINLEAKLYYVHRGLEKLCENQHYMKALLFSERI 231
Query: 69 DYVAPMNQEHAYALAVEKLLGIE-IPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
A+ A+EKL GI IP R RV+++E+ RI HL +++ +D +
Sbjct: 232 SGDETFTNSLAFCHAIEKLNGITYIPERAAYSRVIFAELERICGHLGDISGLCVDTAYIF 291
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
P R + + E+ +GSR +PGG+ +D + I + +
Sbjct: 292 PSGQLGMMRRWIQLLNEQLTGSRFLRNTNKPGGLRRDFIRNNEKIILECINKLDKEFRET 351
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
++ N +F R + G + A G R SG D+RK PY+ YS+L F+I
Sbjct: 352 VAIIKNNGMFIDRVEHTGILANSIAADLNVVGPAGRASGLKTDVRKEFPYDAYSKLKFNI 411
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
P + D R V++ E+ ES+ II+Q + ++
Sbjct: 412 PEHGNCDVNCRMNVKIEEVMESINIIKQALGKMPE------------------------- 446
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
E L+H G P + E+P+GE ++++ N +R K+R P + + A
Sbjct: 447 -EGLVH----VDIGELKPYSYGFGMTESPRGENIHFVMTGENNTIFRYKVRTPSFCNWPA 501
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ + L D I S ++ + D
Sbjct: 502 LCHAVNTNTLTDFPLINKSFNLSYAGND 529
>gi|119871845|ref|YP_929852.1| NADH dehydrogenase (ubiquinone) [Pyrobaculum islandicum DSM 4184]
gi|119673253|gb|ABL87509.1| NADH dehydrogenase (ubiquinone) [Pyrobaculum islandicum DSM 4184]
Length = 407
Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats.
Identities = 117/394 (29%), Positives = 187/394 (47%), Gaps = 11/394 (2%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++ R + GPQHP + G +RL + LDG+I++ V P G +HRG EKL E + + +
Sbjct: 25 RRGERGLVVVVGPQHPGS-GHMRLFVVLDGDIIKEVVPDPGFVHRGMEKLAENRPYWTLI 83
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P ++ + MN LA+EK LG+E P R + +R L +E+ RI +HL ++ +
Sbjct: 84 PLVEKASIMDSMNITLPITLALEKALGLEPPPRAKYLRTLMAELSRIRTHLYDLALLGIF 143
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+G T +W F + + + +G+R AY PGGV +D+ E +E +
Sbjct: 144 LGHSTAFMWSFALMDLYAEVFAKITGARTTVAYPVPGGVRRDVKREHLEAVERLLKKTEE 203
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L D+ + N + K R +G + + A G G R +G +D+RK PY+ Y E
Sbjct: 204 KLRDLKTIFLDNPVTKARLEGVGVIDAKRAAELGVVGPFARAAGIDYDIRKIYPYDAYPE 263
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++F+I K GD R +VR E+ ES+KI+RQ + L G V P+
Sbjct: 264 IEFEIATEKEGDALARVIVRWREIYESIKIVRQIIKEL----PQGDVIDEALLFKNPEYR 319
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
I + GE A EA +G ++L + G + YR + P +
Sbjct: 320 R------EGIGGVLGVYTYIYPEPGEYAAVAEAARGTTYIHLWTTGAQRVYRMRYVTPSW 373
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+L+AM KG +LA++ + S E DR
Sbjct: 374 RNLKAMAEAMKGERLANMPTVYMSFGYFPPEADR 407
>gi|327286118|ref|XP_003227778.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial-like [Anolis carolinensis]
Length = 322
Score = 282 bits (723), Expect = 4e-74, Method: Composition-based stats.
Identities = 156/260 (60%), Positives = 202/260 (77%), Gaps = 4/260 (1%)
Query: 137 EKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRI 196
+++ FYER SG+RMHAAY RPGGVHQD+P L++DI + +F ++++ ++LT NRI
Sbjct: 67 QQMFEFYERVSGARMHAAYVRPGGVHQDMPLGLMDDIYEFVKNFSIRIDEVEEMLTNNRI 126
Query: 197 FKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCY 256
+K R V+IG V E+A +GFSGVM+RGSG WDLRKSQPY+ Y +++FD+PIG GDCY
Sbjct: 127 WKNRTVDIGVVTSEEALNYGFSGVMLRGSGIQWDLRKSQPYDVYDQVEFDVPIGSRGDCY 186
Query: 257 DRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFK 316
DRYL R+ EMR+S++II Q +N++ G V D KI PPKRA+MK SME+LIHHFK
Sbjct: 187 DRYLCRVEEMRQSLRIIVQALNKM----PEGEVKVDDAKISPPKRAEMKTSMEALIHHFK 242
Query: 317 LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQ 376
LYTEGY VP G Y A+EAPKGEFGVYL+SDG ++PYRCKI+APG+AHL ++ + +GH
Sbjct: 243 LYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSQGHM 302
Query: 377 LADVSAILGSLDIVFGEVDR 396
LADV AI+G+ DIVFGEVDR
Sbjct: 303 LADVVAIIGTQDIVFGEVDR 322
>gi|20093159|ref|NP_619234.1| hydrogenase-3, subunit E (HycE homolog) [Methanosarcina acetivorans
C2A]
gi|19918501|gb|AAM07714.1| hydrogenase-3, subunit E (HycE-like protein) [Methanosarcina
acetivorans C2A]
Length = 545
Score = 282 bits (723), Expect = 4e-74, Method: Composition-based stats.
Identities = 91/387 (23%), Positives = 158/387 (40%), Gaps = 18/387 (4%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
+ I GP H + GE + ++ + HRG EKL E K+ + V + +
Sbjct: 176 YQIPVGPVHAGIIEPGHFRFSVIGEPIFSLEIRLFYKHRGIEKLAEGKSPSECVALAEAV 235
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
M + +AVE+ GI +P R + +R + E+ RI S L ++ A+DVG
Sbjct: 236 SGDESMANATGFCMAVEQACGISVPERAERLRAIMLELERIYSLLGDLAGMAVDVGFALV 295
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
RE++ E+ +GSR GG+ +DIP ++++ + + F A
Sbjct: 296 ASPFSILREEVFRQNEKLTGSRFLRGITVLGGLKKDIPDSALKELPAFLEKFSRAFESAY 355
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
D + R G +K E +G + R SG D R +PY Y + +
Sbjct: 356 DRAMSSSSLIDRFATTGVIKKELVSPLNLTGPLARASGCPADTRIDRPYGAYRDFAPEPS 415
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
+ K GD R+ ++ E+R SV +I + L + + R + +
Sbjct: 416 VRKRGDVLSRFEIKADEIRASVNLILRLTENLPQEP-----------VFAENREEAENIG 464
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
++ + GY + A VEA +G+ ++ R K+R Y + QA+
Sbjct: 465 QNSGKNGSSGVTGYSL------ALVEAARGQNLHWVYLK-NGLIDRYKVRTASYCNWQAI 517
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVD 395
E G+ + D I SL++ + D
Sbjct: 518 EHAVIGNIVPDFPLINKSLNLSYAGTD 544
>gi|296242762|ref|YP_003650249.1| NADH dehydrogenase [Thermosphaera aggregans DSM 11486]
gi|296095346|gb|ADG91297.1| NADH dehydrogenase (quinone) [Thermosphaera aggregans DSM 11486]
Length = 367
Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats.
Identities = 123/390 (31%), Positives = 191/390 (48%), Gaps = 33/390 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ FGPQHP A G + L LDG+ V + + G LHRG EK++E +T+ V R
Sbjct: 8 VVYFGPQHPGAPGNIAYKLWLDGDRVVKAEVIPGFLHRGFEKMMENRTWEMNVAMSYRFC 67
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
P + E AY+LAVE + +EIP + +R++ +E+GRI SHL VG TP
Sbjct: 68 VEDPDHLEIAYSLAVEDIYRVEIPENAKWLRMIQAEMGRIASHLFWSHFIGGSVGLRTPA 127
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
W RE+++ ++ R SG R++ + PGG+ +P ED D D+ +
Sbjct: 128 YWAVVAREEILKWFARVSGHRVYHNFSVPGGIRYAVPENFKEDTMRVVDFVEEKALDVEE 187
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
GN +FK R +G + E+A G +G ++R SG +DLR PY Y ++ F++P+
Sbjct: 188 AFLGNNVFKARLKGVGKLTGEEALNLGVTGPVLRASGVKYDLRLKAPYLNYDKVKFEVPV 247
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD YDR +VR E+ ES+ II+Q + +
Sbjct: 248 TNSGDSYDRAVVRFKEIHESLSIIKQALEEFKPGEPLR---------------------- 285
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL-QAM 368
G P+GE A VE+ +GE+ ++++S GG KPYR ++R+ L +
Sbjct: 286 --------VKLGLTAPIGEGVARVESARGEYMIHIVSQGGRKPYRVRLRSMSMPLLTTVV 337
Query: 369 EFLC--KGHQLADVSAILGSLDIVFGEVDR 396
+ + + +AD IL SLD ++DR
Sbjct: 338 DHIISKEEVTIADFPVILASLDPCAPDLDR 367
>gi|319789458|ref|YP_004151091.1| NADH dehydrogenase (quinone) [Thermovibrio ammonificans HB-1]
gi|317113960|gb|ADU96450.1| NADH dehydrogenase (quinone) [Thermovibrio ammonificans HB-1]
Length = 361
Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats.
Identities = 105/392 (26%), Positives = 167/392 (42%), Gaps = 33/392 (8%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETK-TFLQAVPY 64
+ T+ FG QH A +R + + + E + VD +G +HRG EK TK +LQ
Sbjct: 2 GKRITVPFGSQHVALPEPVRFVFQTENEKIVDVDVDVGYVHRGIEKACMTKFKYLQVGYV 61
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
R+ + ++ Y AVE+L+ +E+P + +R++ SE+ RI SHLL + A G
Sbjct: 62 VARVCGLCAISHTLGYVTAVERLMKVEVPKKALYLRLIVSELDRIHSHLLAMGHTAEVAG 121
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
+ F RE +M E +G+R+ + PGGV++D+ E+ +I
Sbjct: 122 YENLFMQTFRYRELVMEILELLTGNRVQFDFAAPGGVNRDLTREVEIEIRRKLKELKEHC 181
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ D+ + R IG V E A G R +G A D R Y + E+
Sbjct: 182 LWLKDVYENDFSLSLRWKGIGVVTPEMATEMNVVGPPARAAGLATDARAEFNYLPFEEVG 241
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F + + G Y+R L+R +E+ S++++ + L PV
Sbjct: 242 FKLITLEGGSIYERNLLRALEVLNSIEMVENALEGLPEGEIKVPVKG------------- 288
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
VP GE + VEAP+GE Y+ + R +IR P +A+
Sbjct: 289 -------------------VPEGEYFVRVEAPRGELFYYIKASKKMVLDRLRIRVPTFAN 329
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ M+ L G ADV A + S D R
Sbjct: 330 IPVMKELFIGMDYADVPATVISFDPCLSCTAR 361
>gi|320176268|gb|EFW51329.1| Hydrogenase-4 component G [Shigella dysenteriae CDC 74-1112]
Length = 525
Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats.
Identities = 100/378 (26%), Positives = 159/378 (42%), Gaps = 34/378 (8%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLTETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E + SR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLTRSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR +IG + + A + G +IRGSG A DLR PY
Sbjct: 354 MRADVSELVEMLLATPNMEQRTQDIGILDRQIARDYSPVGPLIRGSGFARDLRFDHPYAD 413
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 414 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 458
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 459 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 501
Query: 359 APGYAHLQAMEFLCKGHQ 376
A YA+ + ++ +G
Sbjct: 502 AATYANWPVLRYMLRGQY 519
>gi|126459130|ref|YP_001055408.1| NADH dehydrogenase subunit D [Pyrobaculum calidifontis JCM 11548]
gi|126248851|gb|ABO07942.1| NADH dehydrogenase (ubiquinone) [Pyrobaculum calidifontis JCM
11548]
Length = 405
Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats.
Identities = 122/386 (31%), Positives = 195/386 (50%), Gaps = 8/386 (2%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
I +GPQHP++ G R I+E+DG+IV V P G +HR EKL ET+ ++Q +P F+RL
Sbjct: 28 IFWGPQHPSS-GHTRFIVEVDGDIVVNVTPDPGYVHRTMEKLGETRHWIQNIPLFERLSL 86
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+N AYA+A+E+L G+++ R Q +RV+ E+ RI +HL ++ A+ +G+ T +
Sbjct: 87 PDAINVTWAYAMAIERLAGLDVSPRAQYLRVIMGELSRISTHLYDLGLHAIMIGSSTGFM 146
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
W + RE L+ + SGSR + PGGV P E + +++ +
Sbjct: 147 WAYGLRELLVQLWAMVSGSRTTPTWVLPGGVRTAPPDAFYEQTRGFLQYLEKKIDEFVRV 206
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
+ N + R ++G + EDA +G RGSG WD R+ Y Y E ++D+ +
Sbjct: 207 VIKNPVGYYRLKDVGYLSKEDAARLMATGPGARGSGIDWDARRVYRYGIYDEFEWDVCVE 266
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
GD R +VR+ E+ +S +IIRQ ++R + V S +PPK+ + +
Sbjct: 267 DGGDSLARAMVRICEIMQSARIIRQALDRAPRDGPL--VGESVAHRIPPKQREKVNELVR 324
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
L F + +G + +++ DG KPYR +I P + +L+AM
Sbjct: 325 LQALFTMMLPQGEGTGITEGG-----RGRYYFHVLGDGSEKPYRVRISTPSWQNLRAMIK 379
Query: 371 LCKGHQLADVSAILGSLDIVFGEVDR 396
G +L D+ AI GS E DR
Sbjct: 380 AFIGARLMDLPAIYGSFGYFPPEQDR 405
>gi|21227165|ref|NP_633087.1| formate hydrogenlyase subunit 5 [Methanosarcina mazei Go1]
gi|20905500|gb|AAM30759.1| Formate hydrogenlyase subunit 5 precursor [Methanosarcina mazei
Go1]
Length = 530
Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats.
Identities = 97/387 (25%), Positives = 165/387 (42%), Gaps = 22/387 (5%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
+ I GP H + GE + ++ + HRG EKL E K + V + +
Sbjct: 165 YQIPVGPVHAGIIEPGHFRFSVIGEPIFSLEIRLFYKHRGIEKLAEGKNPSECVALAEAV 224
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
M + +AVE++ GI++P R + +R + E+ RI S L ++ A+DVG
Sbjct: 225 SGDESMANAAGFCMAVEQVCGIKVPERAERLRAVMLELERIYSLLGDLAGMAVDVGFALV 284
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
F RE++ E+ +GSR PGG+ +DIP +++I + F +
Sbjct: 285 ASPFFILREEVFRLNEKLTGSRFLRGITFPGGLKKDIPESALKEIPEFLGKFSRSFESAY 344
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
+ T + R V G +K E +G + R SG++ D R +PY Y +
Sbjct: 345 NRATSSSSLIDRFVTTGVIKKELISPLNLTGPIARASGSSSDTRLDRPYGAYRNFTPEHC 404
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
+ K GD + R+ ++ E+R +V +I + +L P A+ S
Sbjct: 405 LRKKGDVFSRFEIKASEIRAAVGLILRLTEKLPQG---------------PVLAENSGSG 449
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
ES T GY + + VEAP+G+ ++ R K+R + + QA+
Sbjct: 450 ESAGEINISGTTGYSL------SLVEAPRGQNLHWVYLK-NGIVDRYKVRTASFCNWQAI 502
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVD 395
E G+ + D I SL++ + D
Sbjct: 503 EHAVLGNIVPDFPLINKSLNLSYAGTD 529
>gi|218884265|ref|YP_002428647.1| NADH-ubiquinone oxidoreductase, chain 49 kDa [Desulfurococcus
kamchatkensis 1221n]
gi|218765881|gb|ACL11280.1| NADH-ubiquinone oxidoreductase, chain 49 kDa [Desulfurococcus
kamchatkensis 1221n]
Length = 373
Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats.
Identities = 133/395 (33%), Positives = 200/395 (50%), Gaps = 33/395 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K R I FGPQHP A G + L LDGE V V+ G LHRG EK++E +T+ V
Sbjct: 9 KGRLVEIYFGPQHPGAPGNIAFKLTLDGERVVNVETIPGFLHRGFEKMMENRTWEMNVVL 68
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
R P E AYA+AVEK+ G+EIP + IR++ +E RI SHL G
Sbjct: 69 SYRFCVEDPDPLEIAYAMAVEKIHGVEIPENAKYIRMIQAEFSRIASHLFWSHFIGGSTG 128
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
TP W RE+++ ++ R +G R++ PGGV +P VED + +
Sbjct: 129 LRTPAYWALVAREEILKWFARFAGHRVYHNISVPGGVRYPLPKSFVEDTLRLTNFVEEKV 188
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
D+ L N IF+ R +G + ++A G +G ++R +G +DLRK PY Y ++
Sbjct: 189 RDVEAALLKNNIFRDRTRGVGRLSSKEALELGVTGPVLRAAGLPYDLRKVTPYLNYDKIQ 248
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F++PI ++GD YDR ++R E+ ES+KIIR+ V R+ + G + P PP
Sbjct: 249 FEVPIVQNGDAYDRSVLRFREIYESLKIIRESVKRI---DPEGGLRVKLPLTAPP----- 300
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
GE A VE+ +GE+ +++IS GG KPYR ++++
Sbjct: 301 ----------------------GEGIARVESARGEYMIHIISTGGRKPYRVRLKSMSLPL 338
Query: 365 L-QAMEFLCKG--HQLADVSAILGSLDIVFGEVDR 396
+ +E++ K +AD +L SLD ++DR
Sbjct: 339 MTTVVEYIVKRDEVTIADFPILLASLDPCAPDIDR 373
>gi|258514105|ref|YP_003190327.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Desulfotomaculum
acetoxidans DSM 771]
gi|257777810|gb|ACV61704.1| Hydrogenase, large subunit-like protein [Desulfotomaculum
acetoxidans DSM 771]
Length = 525
Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats.
Identities = 97/388 (25%), Positives = 156/388 (40%), Gaps = 33/388 (8%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
+ + GP H GE V + + HRG EK E K FL AV +R+
Sbjct: 171 YQVPVGPVHAGIIEPGHFRFFTFGEDVINLQAQLFYTHRGIEKTAEGKHFLDAVLVAERV 230
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
V + +YA A+E L GI P+R + IR + E+ R+ +H+ ++ +G
Sbjct: 231 CGVCSASHAVSYAQAIESLAGINAPLRARYIRTVLLEMERLYNHVGDIGNMCAGIGFSFG 290
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
G E +E+LM + +G R PGGV D+ + E IG D+ L +++
Sbjct: 291 ISRGAELKERLMRMNMKLAGHRYLRGTVVPGGVKIDL--KDTEGIGRALDTVKRELKELT 348
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
D + ++ R G + + A G +G R SG DLR+ PY Y + F +P
Sbjct: 349 DTMLSSQSLLDRMQTTGVLPTDAARDLGATGPAARASGVNRDLRREFPYAAYRRVSFQVP 408
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
I GD Y R + R+ E +S IIRQ N L P++ P
Sbjct: 409 IQHEGDVYCRLIQRIEESEQSFDIIRQVFNNLPAGELQAPITYLQPYHT----------- 457
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
E+ +G +++S N YR +R+ + + +
Sbjct: 458 --------------------AVGYTESARGANVHWVMSGPDNTVYRYMVRSASHCNWPVV 497
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ + D I S ++ + +DR
Sbjct: 498 PLCLPGNIVPDFPLINKSFELCYACLDR 525
>gi|320101196|ref|YP_004176788.1| membrane bound protein complex subunit MbxL [Desulfurococcus
mucosus DSM 2162]
gi|319753548|gb|ADV65306.1| Membrane bound protein complex subunit mbxL [Desulfurococcus
mucosus DSM 2162]
Length = 368
Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats.
Identities = 130/395 (32%), Positives = 199/395 (50%), Gaps = 33/395 (8%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ R I FGPQHP A G + L LDGE V + + G LHRG EK++E +T+ V
Sbjct: 4 RGRLTEIYFGPQHPGAPGNIGFKLLLDGERVVKAEAIPGFLHRGFEKMMENRTWEMNVVL 63
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
R P E AY++A+EK+ ++IP + +R++ +E RI SHL VG
Sbjct: 64 SYRFCVEDPDPLEIAYSMALEKIHRVDIPENAKYLRMIQAEFSRIASHLFWSHFIGGSVG 123
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
TP W RE+++ ++ R SG R++ PGGV +P VED D +
Sbjct: 124 LRTPAYWAVAAREEILKWFARLSGHRVYHNISVPGGVRYPLPDSFVEDTLRVADFVEERV 183
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
D+ L GN++FK R +G + +A G +G ++R +G +DLR++ PY Y ++
Sbjct: 184 RDVEAALLGNKVFKDRTKGLGKLTAREALELGATGPVLRATGLPYDLRRANPYLNYGKVG 243
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
FDIP G GD YDR +VR E+ ES++IIR+ V R+ + P+ P PP
Sbjct: 244 FDIPTGSAGDSYDRSMVRFREIYESLRIIRESVKRI---DPEAPLRVKLPLTAPP----- 295
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
GE A VE +GE+ ++++S GG KPYR ++R+
Sbjct: 296 ----------------------GEGVARVETARGEYMIHIVSTGGRKPYRVRLRSMSMPL 333
Query: 365 L-QAMEFLC--KGHQLADVSAILGSLDIVFGEVDR 396
L +E++ + +AD +L S+D ++DR
Sbjct: 334 LTTVIEYIVSREEVTIADFPVLLASMDPCTPDLDR 368
>gi|312880263|ref|ZP_07740063.1| nickel-dependent hydrogenase large subunit [Aminomonas paucivorans
DSM 12260]
gi|310783554|gb|EFQ23952.1| nickel-dependent hydrogenase large subunit [Aminomonas paucivorans
DSM 12260]
Length = 416
Score = 279 bits (713), Expect = 7e-73, Method: Composition-based stats.
Identities = 98/401 (24%), Positives = 172/401 (42%), Gaps = 31/401 (7%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K ++++ + GP H + L++DGE + G +HRG E + + +Q +
Sbjct: 4 KSHTKTYRVPIGPVHVGLKEPITAWLDVDGERIVDATIRPGAIHRGIEFMARERNPIQVI 63
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
+R+ + A+ AVE I +P R Q IR L E+ R+ SH+L
Sbjct: 64 YLAERICGICSFTHIVAFVRAVEDAAKIPVPPRAQYIRSLVLELERVHSHILWAGVACYT 123
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+G + G + REK+M E +G+R++ GGV +D+ P + + I +
Sbjct: 124 LGFDSAFHLGMQLREKVMDVLEAFTGNRVNYGIGTVGGVRRDVTPGVGKAIQEMLSFYRR 183
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
D++T + + + R ++GT+ EDA + G +RGSG D+R + PYE Y +
Sbjct: 184 EFRVFYDIVTEDLVARARMRDVGTLAPEDAVKYCTLGPTLRGSGHRVDVRWNAPYEAYQD 243
Query: 243 ------LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKI 296
+ D GD +DR+LVR+ E+ +S++I + +L GP+ +
Sbjct: 244 LVVQPVVPQDTMGEVRGDVFDRFLVRVHEVYQSLEI----LETILAGLPEGPLVWEPKLV 299
Query: 297 VPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISD-GGNKPYRC 355
G + +E P+G+ + G
Sbjct: 300 KLLAYL--------------------KQADGTGWGCIEGPRGDDTHVVRLKAGEENVNWW 339
Query: 356 KIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
K+RAP Y++ A + + LAD S I+ S+D ++R
Sbjct: 340 KVRAPTYSNAVAWPLMFRNQDLADASLIINSVDPCISCMER 380
>gi|327312051|ref|YP_004338948.1| NADH-quinone oxidoreductase subunit D [Thermoproteus uzoniensis
768-20]
gi|326948530|gb|AEA13636.1| NADH-quinone oxidoreductase, subunit D [Thermoproteus uzoniensis
768-20]
Length = 408
Score = 278 bits (712), Expect = 9e-73, Method: Composition-based stats.
Identities = 118/390 (30%), Positives = 198/390 (50%), Gaps = 8/390 (2%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
R+ + FGPQHP + G +R +ELDG+I+ + P G +HR EKL ET+ F+ +P F+
Sbjct: 27 RTLELLFGPQHPTS-GHIRFFVELDGDIIVDIRPDPGFVHRTMEKLGETRHFMMNIPLFE 85
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RL +N AY++AVE++LG ++ R + +R L+ E+ RI HL ++ A+ +G+
Sbjct: 86 RLSLPDAINVTWAYSMAVERMLGYDVSERAEYLRTLFGEMSRISVHLYDLALHAIMIGSS 145
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
T ++GF R+ L + A+G+R + PGGV + P E + + D +++
Sbjct: 146 TGFMYGFGLRDLLTNLWAIATGARTTPTWVLPGGVRRAPPKVFYERLAGFLDFLERKMDE 205
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
L+ N + R ++G + DA + +G RGSG WD R+ PY Y +++++
Sbjct: 206 FYRLVVKNPVGYYRLKDVGYLSKSDAAAYLATGPGARGSGVDWDARRDLPYGMYKQVEWE 265
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ + GD R LVR+ E+RES KIIRQ + + + V + +PPK +M
Sbjct: 266 VKVRDEGDSLARTLVRIDEVRESAKIIRQLLKSMPMDGPL--VGHNATHKIPPKEREMLN 323
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+ + ++ T E E +G + + G + +R +I P + +L+
Sbjct: 324 EIVRMSGYYVTTTNL-----AEGTGVTEGGRGRYFFQVFGSGTERLFRVRISTPSWQNLR 378
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
A G +L D+ AI GS E DR
Sbjct: 379 AFMKATVGARLMDLPAIYGSFGFFPPEADR 408
>gi|182414280|ref|YP_001819346.1| NADH dehydrogenase (quinone) [Opitutus terrae PB90-1]
gi|177841494|gb|ACB75746.1| NADH dehydrogenase (quinone) [Opitutus terrae PB90-1]
Length = 531
Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats.
Identities = 89/388 (22%), Positives = 161/388 (41%), Gaps = 31/388 (7%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
F + GP H + + GE V + + +H+GTEKL E+ V + +
Sbjct: 175 FQVPVGPVHAGVIEPGHFLFSVAGEPVLYLQLRMFYVHKGTEKLFESLPITHGVRLAESI 234
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+ A+ A+E+ G+ P RG+ +R L E+ RI +H+ ++ DV +T
Sbjct: 235 SGDSAFAHATAFCHAIERAAGVAAPPRGRALRTLCLELERISNHVADIGAICTDVAFVTA 294
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
+ +E+++ + E+ +G+R+ GGV D ++ + + D+ D+
Sbjct: 295 QMHALRLKEQVLRWNEQLTGNRLLRGMACLGGVRFDFDSAQLDALAAFVDTLEQQFKDLV 354
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
+L+ + + R G + A G G+ R SG DLR+ P + Y ++ F +P
Sbjct: 355 ELIRSHSGTRDRLETTGVLAPAVARDLGIVGIAGRASGIDHDLRRDCPTDFYDQVQFTVP 414
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
+ GD R +VR E+ +S+ IIRQ + ++ G PV
Sbjct: 415 VFTEGDVQRRMVVRREELFQSLGIIRQVLAKMPGGAIATPV------------------- 455
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
G VE +GE ++ + GN+ RCKI+ P + A+
Sbjct: 456 ------------GDVPADRIALGYVEGWRGEIFHWVHTAPGNRLARCKIKDPSLQNWPAL 503
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ + D + S ++ + DR
Sbjct: 504 SEAILGNIIPDFPVVNKSFNLSYSGTDR 531
>gi|167045510|gb|ABZ10163.1| putative Respiratory-chain NADH dehydrogenase, 49 Kd subunit
[uncultured marine microorganism HF4000_APKG10H11]
Length = 363
Score = 276 bits (705), Expect = 6e-72, Method: Composition-based stats.
Identities = 129/390 (33%), Positives = 190/390 (48%), Gaps = 34/390 (8%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
T+N+GPQHP G R+I+ +DG++ +P IG HRG EKL+E + FL +P +R
Sbjct: 6 VTLNWGPQHPVT-GHFRMIMTIDGDLCVGAEPTIGYTHRGIEKLLENRQFLVGIPMIERF 64
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+ +Y AVE L+ E P R Q +R + SEI R+ SHL N+ + +G TP
Sbjct: 65 NMTDTAPMSLSYTKAVESLMDFEAPPRAQYLRTIISEICRLSSHLYNLALYTVALGMYTP 124
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA-LNDI 187
+W +RE + E SG R+ Y PGGV++D+PP+ F + L D
Sbjct: 125 FMWAIGDREHFLKLGEILSGVRLAYNYPIPGGVYKDMPPDFPHQATKTIKYFRNRLLKDY 184
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ K R ++G + E+A WG +G ++R SG D+RK +PY Y+E+DFD+
Sbjct: 185 KKFIYDTTAVKSRGEDVGIMSKEEALKWGVTGPVLRASGVKKDMRKVEPYGAYNEVDFDV 244
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
GD + R LVR EM +S+ I+ QC+ + + V
Sbjct: 245 ITKNEGDSHARMLVRYEEMEQSLNILEQCIKDIPAGDYFTKVR----------------- 287
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGG-NKPYRCKIRAPGYAHLQ 366
VP GE + VEA +GE GVYL + N PYR K P + +
Sbjct: 288 --------------PAVPAGETFTRVEAARGEVGVYLFNKETRNMPYRTKFSNPSFKNGY 333
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ L G +AD +AI S+D+ E+DR
Sbjct: 334 VLPKLFVGSVIADCAAIYHSIDVWALEMDR 363
>gi|66773823|sp|Q5DUX5|NDUS2_NYCOV RecName: Full=NADH-ubiquinone oxidoreductase 49 kDa subunit;
AltName: Full=NADH dehydrogenase subunit 7
gi|60416553|emb|CAI38863.1| NADH dehydrogenase subunit 7 [Nyctotherus ovalis]
Length = 412
Score = 275 bits (704), Expect = 8e-72, Method: Composition-based stats.
Identities = 152/399 (38%), Positives = 231/399 (57%), Gaps = 10/399 (2%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
D + R +NFGPQHPA+HGVLRL++ + GE+V ++DPHIG LHRGTE+L+E +++ A
Sbjct: 20 DSTRFRILILNFGPQHPASHGVLRLVIVIIGEVVTKLDPHIGFLHRGTERLVEEHSYMNA 79
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKL-LGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ DRLDY + Q HAY LAVE+ + IR QL+R ++ E+ RIL+HLL++ T A
Sbjct: 80 AVFMDRLDYTTVLTQTHAYCLAVEQALAKSRLCIRTQLLRTIFDELSRILNHLLSIATHA 139
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGG-VHQDIPPELVEDIGCWCDS 179
+D+G + W FE+RE++M YE SG+RMH A + P + + EL+ I + +
Sbjct: 140 LDIGTMAMLFWAFEDRERIMELYEYISGARMHTALYYPNQTLDHILTNELLAKILIFSRN 199
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLR--KSQPY 237
+I L NR+++ R IG V E + SG + R +G D+R ++ Y
Sbjct: 200 SEKTYTEIYIALYNNRVWRLRLCGIGVVSTEISTSTTISGPVARSTGLQLDMRSGENYQY 259
Query: 238 ECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIV 297
Y+ L I +G GD +DR+++R+ E+ ES ++I + L + +
Sbjct: 260 GYYASLTLRIFLGISGDSFDRFIIRLRELFESTRLIYNSLIELSAYINISVYNMCSYSNN 319
Query: 298 PPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKI 357
P + +ESLI F+ Y + + V VE+ KG FG+ L ++ N+PYR I
Sbjct: 320 PHLK------IESLIELFRYSLGEYLLNISLVSGFVESGKGIFGIMLAANNTNRPYRLYI 373
Query: 358 RAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
R+P Y HLQ + L GH +AD++ +LGS+D+VFGEVDR
Sbjct: 374 RSPAYMHLQLLPKLGAGHHIADLATLLGSIDVVFGEVDR 412
>gi|297619187|ref|YP_003707292.1| NADH dehydrogenase (ubiquinone) [Methanococcus voltae A3]
gi|297378164|gb|ADI36319.1| NADH dehydrogenase (ubiquinone) [Methanococcus voltae A3]
Length = 381
Score = 275 bits (704), Expect = 8e-72, Method: Composition-based stats.
Identities = 99/389 (25%), Positives = 156/389 (40%), Gaps = 29/389 (7%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H RL L +D EI++ + IG+ HRG E+L+E +A +++
Sbjct: 5 EIAIGPVHSTMLEPHRLRLFIDDEIIKDAELTIGVNHRGIERLMEGLPVEKACILTEKIC 64
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + E I +P R Q IRV+ E+ R+ SH L +G T
Sbjct: 65 GICSHIHLWSSVRLTEIASKIYVPERAQHIRVIIEELERLHSHTLLFGHAFEILGHETMS 124
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPG--GVHQDIPPELVEDIGCWCDSFPSALNDI 187
+ F RE +M + SGSR+H + G DI E I D + ++ I
Sbjct: 125 MRCFMTREPVMQIFFEISGSRVHYSCPIIGGIRPRCDITEEQCRKILPKLDEYEENISAI 184
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
D + + + R ++G + + A + G RGS D+RK Y +FD
Sbjct: 185 IDRVLNDPLLVSRMKDVGVLDRKTAAKFHAVGPTARGSNVKSDMRKMGWVPEYDVYEFDE 244
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
+ D R VR E+ ES+KIIRQ + L K+ + S+ ++
Sbjct: 245 ILFDGCDVLSRIAVRGFEILESIKIIRQAIGFLTDKSLSPEIYNSNYEL----------- 293
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
E + EA +G+ D + +IR P +L A
Sbjct: 294 ------------EEFKPIE----CYTEAQRGQQYYSYGVDADGRVRHARIRTPTATNLGA 337
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
ME + +G+ ++D I+ S D F DR
Sbjct: 338 MEEIVRGYHVSDAELIIASCDPCFTCTDR 366
>gi|18312731|ref|NP_559398.1| NADH dehydrogenase subunit D [Pyrobaculum aerophilum str. IM2]
gi|18160210|gb|AAL63580.1| NADH-ubiquinone oxidoreductase subunit [Pyrobaculum aerophilum str.
IM2]
Length = 430
Score = 275 bits (703), Expect = 9e-72, Method: Composition-based stats.
Identities = 122/386 (31%), Positives = 195/386 (50%), Gaps = 8/386 (2%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
I +GPQHP++ G R I+E+DG++V V P G +HR EKL ET+ ++Q +P F+RL
Sbjct: 53 IFWGPQHPSS-GHTRFIIEVDGDVVVNVTPDPGYVHRTMEKLGETRHWIQNIPLFERLSL 111
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+N AYALA+E+L ++ R Q +RV+ E+ RI +HL ++ A+ +G+ T +
Sbjct: 112 PDAINVTWAYALAIERLAKYDVSPRAQYLRVIMGELSRISTHLYDLGLHAIMIGSSTGFM 171
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
W + RE L+ + ASGSR + PGGV P E + D +++ +
Sbjct: 172 WAYGLRELLVQLWAMASGSRTTPTWVLPGGVRTAPPDAFYEQTRGFLDYLEKKVDEFMRV 231
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
+ N + R ++G + EDA +G RGSG WD R++ Y Y E ++++ +
Sbjct: 232 VVKNPVGYYRLKDVGYLSKEDAARLMATGPGARGSGIEWDARRAYKYGVYDEFEWEVCVE 291
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
GD R +VR+ E+R+S +IIRQ ++R+ + V + +PPK+ + +
Sbjct: 292 DGGDALARTMVRICEIRQSARIIRQALDRVPRDGPL--VGEALLHRIPPKQREKANELIR 349
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
L F +G + + DG KPYR +I P + +L+AM
Sbjct: 350 LGALFTTMLPQGEGVGVTEGG-----RGRYYFQVFGDGTEKPYRVRISTPSWQNLRAMIR 404
Query: 371 LCKGHQLADVSAILGSLDIVFGEVDR 396
G +L D+ AI GS E DR
Sbjct: 405 AFIGARLMDLPAIYGSFGYFPPEQDR 430
>gi|45358716|ref|NP_988273.1| energy conserving hydrogenase B large subunit [Methanococcus
maripaludis S2]
gi|45047582|emb|CAF30709.1| energy conserving hydrogenase B large subunit [Methanococcus
maripaludis S2]
Length = 375
Score = 275 bits (703), Expect = 9e-72, Method: Composition-based stats.
Identities = 107/389 (27%), Positives = 158/389 (40%), Gaps = 30/389 (7%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H RL L ++ EIV+ + IG+ HRG E+L+E +A +++
Sbjct: 5 EIAIGPVHSTMLEPHRLRLFIEDEIVKDAELTIGVNHRGVERLMEGLPVEKACILCEKIC 64
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + A VE IEIP R IR++ E+ R+ SH L +G T
Sbjct: 65 GICSHIHLWSAARLVEIGCNIEIPERANHIRIIVEELERLHSHTLLFGHAFEILGHETMS 124
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPG--GVHQDIPPELVEDIGCWCDSFPSALNDI 187
+ F RE +M + SGSR+H + G +I + I + LN
Sbjct: 125 MRCFMLREPIMQVFFEISGSRVHYSCPIIGGIRPRCNISETQIPHILDKISKYEEGLNKF 184
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ + + + R ++G + + A + G RGS D+RK Y DFD
Sbjct: 185 LERMLNDPMIISRVKDVGVMDRKTAAKFHAVGPTARGSNVKSDMRKWGWVPEYDPYDFDE 244
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
+ GD + R VR E ESVKIIRQ ++ L + D +I P
Sbjct: 245 ILFDSGDVFARLAVRFYECLESVKIIRQALDALKDTS--------DKRIYNPNYE----- 291
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
+H FK EA +GE D + KIR P +L A
Sbjct: 292 ----LHEFKPIN-----------CYTEAQRGEQYYSYGLDDEGLVRQAKIRTPTATNLGA 336
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
ME + KG+ ++D I+ S D F DR
Sbjct: 337 MEDIVKGYHVSDAELIIASCDPCFTCTDR 365
>gi|156937335|ref|YP_001435131.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Ignicoccus hospitalis
KIN4/I]
gi|156566319|gb|ABU81724.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Ignicoccus hospitalis
KIN4/I]
Length = 540
Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats.
Identities = 132/398 (33%), Positives = 199/398 (50%), Gaps = 30/398 (7%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ + GPQHPA HG + +L L GEIVE V P +G +HRG E + E K +L+ +P
Sbjct: 167 REDLTYVYVGPQHPATHGPVGFLLGLKGEIVEDVIPRLGYVHRGVEWIYEQKEYLKVIPL 226
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
DR Y+ + E Y +A+E+++ +++ R QL+R+L +E+ RI SHLL + + A +V
Sbjct: 227 LDRQCYIDGIGWEWPYVMALEEIMDVKVDRRAQLLRILAAELSRIQSHLLYIGSFAENVN 286
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
LT W +RE + E +G RM Y RPGGV D+P + F
Sbjct: 287 HLTAFAWTVRDREVFINLLEMLTGQRMTFNYLRPGGVAFDLPQGFKDVYEKVVARFHKHF 346
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE-L 243
+ + N R + V EDA +G+SG +R SG AWDLR ++PY Y + +
Sbjct: 347 EKLIETTLDNPTVAMRAEGVAQVSAEDAIKYGWSGPNLRASGVAWDLRINKPYGGYDDGI 406
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DF+ +G GD DR LVR E+R+S+KIIRQ + R
Sbjct: 407 DFEGAVGSVGDNLDRMLVRFEEIRQSLKIIRQVL-----------------------REL 443
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGG-----NKPYRCKIR 358
+R L H K + G Y ++P+GE G+ L+++ +P+R +R
Sbjct: 444 TERGQNELGTHLKRV-PPFPRKPGIAYGYHDSPRGENGILLVANPSDPKWRTRPWRVHMR 502
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+P + H ++++L KG L D A SLD E+DR
Sbjct: 503 SPVFVHTMSLKYLGKGLLLQDFLAFYISLDTCVAEMDR 540
>gi|134045478|ref|YP_001096964.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Methanococcus
maripaludis C5]
gi|132663103|gb|ABO34749.1| membrane-bound hydrogenase subunit ehbN [Methanococcus maripaludis
C5]
Length = 375
Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats.
Identities = 103/389 (26%), Positives = 156/389 (40%), Gaps = 30/389 (7%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H RL L ++ EIV+ + IG+ HRG E+L+E +A +++
Sbjct: 5 EIAIGPVHSTMLEPHRLRLFIEDEIVKDAELTIGVNHRGVERLMEGLPVEKACILCEKIC 64
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + A E IE+P R IR++ E+ R+ SH L +G T
Sbjct: 65 GICSHIHLWSAARVAEIGCNIEVPERANHIRIIVEELERLHSHTLLFGHAFEILGHETMS 124
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPG--GVHQDIPPELVEDIGCWCDSFPSALNDI 187
+ F RE +M + SGSR+H + G +I + I + L
Sbjct: 125 MRCFMLREPIMQVFFEISGSRVHYSCPIIGGIRPRCNISETQISHIHDKISQYEEGLTKF 184
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ + + + R ++G + + A + G RGS D+RK Y DFD
Sbjct: 185 IERMLNDPMIISRVKDVGVMDRKTAAKFHAVGPTARGSNVKSDMRKWGWVPEYDPYDFDE 244
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
+ GD + R VR E ESVKIIRQ ++ L + D +I P
Sbjct: 245 ILFDSGDVFARLAVRFYECLESVKIIRQALDALKDTS--------DKRIYNPNYE----- 291
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
++ FK EA +GE D + KIR P +L A
Sbjct: 292 ----LNEFKPIN-----------CYTEAQRGEQYYSYGLDDEGLVRQAKIRTPTATNLGA 336
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
ME + KG+ ++D I+ S D F DR
Sbjct: 337 MEDIVKGYHVSDAELIIASCDPCFTCTDR 365
>gi|145592466|ref|YP_001154468.1| NADH dehydrogenase (ubiquinone) [Pyrobaculum arsenaticum DSM 13514]
gi|145284234|gb|ABP51816.1| NADH dehydrogenase (ubiquinone) [Pyrobaculum arsenaticum DSM 13514]
Length = 406
Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats.
Identities = 113/390 (28%), Positives = 188/390 (48%), Gaps = 11/390 (2%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
R T+ GPQHP + G +R+ L LDG+++ P G +HRG EKL E + + +P +
Sbjct: 28 RGLTLVVGPQHPGS-GHMRIFLVLDGDVIVDAFPDPGFVHRGIEKLAENRPYWTLIPLVE 86
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
+ + N + LA+EK L +E P R + +R++ +E+ RI +HL ++ + +G
Sbjct: 87 KASIMDSANIIYPLVLALEKSLALEPPPRAKYLRLIMAELTRIRTHLYDLALLGIFLGHS 146
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
T +WGF ++ + + + +G+R AY PGGV +D P+ VE + + LND
Sbjct: 147 TAFMWGFALQDLIAEVFAKIAGARTTTAYLVPGGVRRDFKPDHVELVERLLRKVEAKLND 206
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+L N + + R +G + + G G R SG +D+R++ PY+ Y+EL ++
Sbjct: 207 FKNLFLDNPVTRARLEGVGVLDAKRVAELGVVGPFARASGVDFDVRRAYPYDAYAELGYE 266
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ K GD + R VR E+R S++++R+ + L G V S P+
Sbjct: 267 PVVDKAGDAWARTWVRWEEVRRSIELVRRALREL----PQGDVIDSALLFKNPEYRR--- 319
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
I + GE EA +G L + G + YR + P + +L+
Sbjct: 320 ---EGISGVMGVYTYMYPEPGEWLGVAEATRGLALAQLWASGLQRVYRMRFVTPSWRNLR 376
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
AM KG +LAD+ A+ S E DR
Sbjct: 377 AMIEAMKGERLADMPAVYMSFGYFPPEADR 406
>gi|303244383|ref|ZP_07330719.1| nickel-dependent hydrogenase large subunit [Methanothermococcus
okinawensis IH1]
gi|302485278|gb|EFL48206.1| nickel-dependent hydrogenase large subunit [Methanothermococcus
okinawensis IH1]
Length = 373
Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats.
Identities = 98/389 (25%), Positives = 154/389 (39%), Gaps = 31/389 (7%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H A RL L ++ EIV+ + IG+ HRG E+L+E +A +++
Sbjct: 5 EIAIGPIHSAILEPHRLRLFIEDEIVKDAELTIGVNHRGIERLMEGLPPEKACILTEKIC 64
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ VE IE+P R IRV+ E+ R+ SH L +G T
Sbjct: 65 GICSHIHLWNSVRVVETGSNIEVPERANYIRVIVEELERLHSHTLVFGHAFEILGHETMS 124
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIP--PELVEDIGCWCDSFPSALNDI 187
+ F RE +M SGSR+H + GG+ + + + + L +
Sbjct: 125 MRAFMLREPVMQMLFDISGSRVHYSCPIIGGIRPRCNIKDSQISGLIERIEKYEENLKKL 184
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+D + + R +IG + + A + G R S D+RK Y +FD
Sbjct: 185 ADRTINDPMLVSRMKDIGIMDRKVAAKYHAVGPTARASNVKSDMRKMGYAPEYDPFEFDE 244
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
+ GD R +VR+ E ESVKI++Q + L + + +I K D+
Sbjct: 245 ILLDDGDVLARIIVRIYECLESVKILKQALKELPNLPEK--FYNPNYEITEFKPIDIYN- 301
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
EA +G+ DG + K+R P +L
Sbjct: 302 --------------------------EAQRGQVYHSYGVDGEGRVRHSKVRTPTATNLAC 335
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
ME + KG+ ++D I+ S D F DR
Sbjct: 336 MEKILKGYHVSDAELIIASCDPCFTCTDR 364
>gi|268679824|ref|YP_003304255.1| NADH dehydrogenase (quinone) [Sulfurospirillum deleyianum DSM 6946]
gi|268617855|gb|ACZ12220.1| NADH dehydrogenase (quinone) [Sulfurospirillum deleyianum DSM 6946]
Length = 362
Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats.
Identities = 108/386 (27%), Positives = 163/386 (42%), Gaps = 33/386 (8%)
Query: 13 FGPQHPAAHGVLRLILE--LDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
GP A + + DG+ ++ V+ G +HRG E ++ K FLQ + +++
Sbjct: 8 LGPFDVALEEPVYFNITPNADGKTIQSVEMINGFVHRGMESIVLRKNFLQNLIITEKVCG 67
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ N Y +AVEKL I IP R +RV+ E R+ SHL NV A + T
Sbjct: 68 LCSNNHPFTYCMAVEKLSHITIPKRAAYLRVIADETKRVASHLFNVAMLAHLLKRHTLMG 127
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
E RE E+ G+RM + GGV D+ E + + +AL I +
Sbjct: 128 SLLEAREHFQDIKEQIWGNRMDLSANVIGGVKYDLNSEKIAFMKEKMVLTRTALEAIVHI 187
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
+ K+R +G + E A G G + R SG D+R PY Y L F +
Sbjct: 188 FETDESLKKRIQGVGVLPHEKALSLGVVGPVARASGVNNDVRFCAPYAVYDALSFKVITR 247
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
GD Y R +VR+ E+ ES+ ++ Q + L V +
Sbjct: 248 SEGDVYARAMVRLYEIFESMSLLEQAFDALPEGEIALHVKS------------------- 288
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
V GE + EAP+GE YL S+G KP R K R P Y + +A++
Sbjct: 289 ------------VVQKGEATSRSEAPRGELMYYLKSNGSQKPERMKWRVPSYMNWEALKV 336
Query: 371 LCKGHQLADVSAILGSLDIVFGEVDR 396
+ K + + DV+ I S+D +R
Sbjct: 337 MLKDNAIEDVALIFNSIDPCISCSER 362
>gi|160902351|ref|YP_001567932.1| NADH dehydrogenase subunit D [Petrotoga mobilis SJ95]
gi|160359995|gb|ABX31609.1| NADH dehydrogenase (quinone) [Petrotoga mobilis SJ95]
Length = 369
Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats.
Identities = 118/392 (30%), Positives = 201/392 (51%), Gaps = 26/392 (6%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+ + GP HP HG + + +DG+ + R P G+LHRG EKL+E + ++ +
Sbjct: 2 KELKLYLGPNHPGMHGNFSVHMYVDGDTIVRARPMPGMLHRGFEKLMERRLWMNNLALIP 61
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+ P E YA+A+E+L GIE+P + IR++ E+ RI +HL+++ VG
Sbjct: 62 RICVPEPDINEMVYAMAIEELTGIEVPEKAHWIRMIILELARIANHLMSLGGIGGPVGLY 121
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
T P WG +R+ ++ +E +G+R++ Y PGGV +D+ E +E I + D + L +
Sbjct: 122 TGPNWGLADRDLILDIFEEITGARIYHMYIVPGGVRKDLREETIEKIKSFLDYLENRLPE 181
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG-VMIRGSGAAWDLRKSQPYECYSELDF 245
DL+ N +F++R + + E W G +G M G A+D+RK PY Y +++F
Sbjct: 182 YEDLILKNSLFQRRTKDKLLLPAEVVWELGVTGIGMRSAVGEAYDIRKVDPYARYDQVEF 241
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+P + D Y R + +E +S+KIIRQ + ++ K KV ++ +
Sbjct: 242 YVPTANYSDGYTRVYFKYLETYQSIKIIRQVLEKMPQKGKVWNKISNGSALR-------- 293
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH- 364
+ VP G+VY VE +GE+G Y++S+G +KPYR +R Y
Sbjct: 294 ----------------WRVPKGQVYTHVECARGEYGYYMVSEGEDKPYRVAVRGASYPQG 337
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
L +E G ++ D + + ++ + E+DR
Sbjct: 338 LLGVEKYLPGTRIEDAALWMDTMGVCPPEIDR 369
>gi|150402327|ref|YP_001329621.1| NADH-ubiquinone oxidoreductase chain 49kDa [Methanococcus
maripaludis C7]
gi|150033357|gb|ABR65470.1| NADH-ubiquinone oxidoreductase chain 49kDa [Methanococcus
maripaludis C7]
Length = 375
Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats.
Identities = 108/389 (27%), Positives = 157/389 (40%), Gaps = 30/389 (7%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H RL L ++ EIV+ + IG+ HRG E+L+E +A +++
Sbjct: 5 EIAIGPVHSTMLEPHRLRLFIEDEIVKDAELTIGVNHRGVERLMEGLPVEKACILCEKIC 64
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + A E IEIP R IR++ E+ R+ SH L +G T
Sbjct: 65 GICSHIHLWSAARLAEIGCNIEIPERANHIRIIVEELERLHSHTLLFGHAFEILGHETMS 124
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPG--GVHQDIPPELVEDIGCWCDSFPSALNDI 187
+ F RE +M + SGSR+H + G +I + I + LN
Sbjct: 125 MRCFMLREPIMQVFFEISGSRVHYSCPIIGGIRPRCNISDTQIPHILEKVSKYEEGLNKF 184
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ + + + R ++G + + A + G RGS D+RK Y DFD
Sbjct: 185 IERMLNDPMIISRVKDVGVMDRKTAAKFHAVGPTARGSNVKSDMRKWGWVPEYDPYDFDE 244
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
+ GD + R VR E ESVKII+Q VN L D +I P
Sbjct: 245 ILFDSGDVFARLAVRFYECLESVKIIKQAVNALKDTA--------DKRIYNPNYE----- 291
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
+H FK EA +GE DG + KIR P +L A
Sbjct: 292 ----LHEFKPIN-----------CYTEAQRGEQYYSYGLDGEGLVRQAKIRTPTATNLGA 336
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
ME + KG+ ++D I+ S D F DR
Sbjct: 337 MEDIVKGYHVSDAELIIASCDPCFTCTDR 365
>gi|109629808|gb|ABG35126.1| NADH dehydrogenase subunit 7 [labyrinthulid quahog parasite QPX]
Length = 289
Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats.
Identities = 169/293 (57%), Positives = 217/293 (74%), Gaps = 4/293 (1%)
Query: 51 KLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRIL 110
KLIE KT+LQ +PYFDRLDYV+ + QEH Y+LA+E LL I++PIR Q IRV++ EI RIL
Sbjct: 1 KLIEYKTYLQGLPYFDRLDYVSMIAQEHTYSLAIESLLEIQVPIRAQYIRVIFLEITRIL 60
Query: 111 SHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELV 170
+HLL V+ A+D GA+TP WGFEEREKL+ FYER SG+R+HAAY RP GV D+P L+
Sbjct: 61 NHLLAVSCHALDTGAITPFFWGFEEREKLIEFYERVSGARIHAAYIRPCGVSFDLPKGLL 120
Query: 171 EDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWD 230
+DI +C+ F L++ +LLT NRI++QR V+IG V ++A WGFSGVM+RGSG WD
Sbjct: 121 DDIYHFCNQFKVCLDEFEELLTYNRIWRQRLVDIGIVSAKEAKAWGFSGVMLRGSGLCWD 180
Query: 231 LRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVS 290
+RK++ YE Y +L F+IP+G +GDC+DRYLVR+ EMRES+ II QC+N GPV
Sbjct: 181 IRKNEAYEVYKKLSFNIPVGTNGDCFDRYLVRIEEMRESLCIIFQCIN----IIPEGPVQ 236
Query: 291 ASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVY 343
+ D K + +K S+E LIHHFK TEG+ VP GEVY A EAPKGEFGV+
Sbjct: 237 SHDLKYRKVGKTIIKNSIEGLIHHFKYSTEGFSVPSGEVYCATEAPKGEFGVF 289
>gi|209964718|ref|YP_002297633.1| hydrogenase-4 component G [Rhodospirillum centenum SW]
gi|209958184|gb|ACI98820.1| hydrogenase-4 component G [Rhodospirillum centenum SW]
Length = 510
Score = 272 bits (697), Expect = 5e-71, Method: Composition-based stats.
Identities = 99/385 (25%), Positives = 160/385 (41%), Gaps = 31/385 (8%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
I GP H GE V R++ +G +H+GTE+L+ + +A R+
Sbjct: 156 IPVGPVHAGIIEPGHFRFSCQGETVVRLEERLGYVHKGTERLMRGRLPEEAARLAGRISG 215
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ + A+ALAVE LG+E+P R +L+R L +E+ R+ +HL ++ D
Sbjct: 216 DSTVAYALAFALAVEAALGLEVPPRARLLRALMAELERLANHLNDIGAICNDAAFALMLA 275
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
G RE++M + G R PGG+ D+ E + D+ P + ++ L
Sbjct: 276 EGSTLRERVMRTADTCFGHRFMMDRIVPGGIAVDLKEEGRAALYDMLDAVPRVVRQLAAL 335
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
G R V G V A +G G + R S A D R+S Y Y +L+FD+P
Sbjct: 336 YDGTSSLLDRTVGTGIVSPALAHRFGAGGPVGRASSRAADARRSPGYAPYPDLEFDVPTL 395
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
HGD R L+R E+ +S+++IRQ + RL + + P
Sbjct: 396 PHGDVNARILIRFAEVEQSIRLIRQILKRLEPGP---------ARALLPAPEQ------- 439
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
E A VE+ +G+ +L G + R +R P + +E
Sbjct: 440 ---------------PAEGMALVESFRGDVLCWLRLGAGGRIERAHLRDPSWFQWPLLEA 484
Query: 371 LCKGHQLADVSAILGSLDIVFGEVD 395
+G+ +AD S + + D
Sbjct: 485 AIEGNIVADFPICNKSFNCSYSGHD 509
>gi|148642372|ref|YP_001272885.1| [NiFe]-hydrogenase-3-type complex, large subunit/NADH:quinone
oxidoreductase (complex I), subunit 49K/NdhH/NuoD
[Methanobrevibacter smithii ATCC 35061]
gi|222444425|ref|ZP_03606940.1| hypothetical protein METSMIALI_00036 [Methanobrevibacter smithii
DSM 2375]
gi|261351025|ref|ZP_05976442.1| carbon monoxide-induced hydrogenase [Methanobrevibacter smithii DSM
2374]
gi|148551389|gb|ABQ86517.1| [NiFe]-hydrogenase-3-type complex, large subunit/NADH:quinone
oxidoreductase (complex I), subunit 49K/NdhH/NuoD
[Methanobrevibacter smithii ATCC 35061]
gi|222433990|gb|EEE41155.1| hypothetical protein METSMIALI_00036 [Methanobrevibacter smithii
DSM 2375]
gi|288860365|gb|EFC92663.1| carbon monoxide-induced hydrogenase [Methanobrevibacter smithii DSM
2374]
Length = 374
Score = 272 bits (697), Expect = 5e-71, Method: Composition-based stats.
Identities = 94/390 (24%), Positives = 161/390 (41%), Gaps = 37/390 (9%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
+ GP HP +RL L+ +GE V + + G +HRG EK+IE KT+ + + +R+
Sbjct: 1 MILPIGPIHPYLKEPIRLKLQTEGERVVKAEIEYGYVHRGIEKIIEGKTWQKGIYLAERV 60
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+ ++A +E++ G+ P+R Q +RV+ +E+ RI SHLL +T + T
Sbjct: 61 CGICSYEHTQSFAETIERISGVYAPLRAQFLRVITNELDRIQSHLLGNSTFFKSIDHETL 120
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
+ + RE M E +G+R++ + GGV D + I + +
Sbjct: 121 YMQSLDIREYAMDSIELLTGNRVNMGWNVVGGVKMDADERHFKPILDNLKIIEERIPRLR 180
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
++ R+ N+G + ++A G + RGSG DLR+ Y DF
Sbjct: 181 EIYAEGPAIGMRSRNVGVMTKKEAIKGKAVGPIGRGSGLKHDLREDH-YTYNDHFDFKTI 239
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
K GD Y R L R+ E+ E + +IRQ + + + PV
Sbjct: 240 WRKEGDNYARTLNRIDEIPECISLIRQAIENMPKGDIRVPV------------------- 280
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL-QA 367
+ G EAP+GE + ++G IR P +++
Sbjct: 281 --------------DIKSGYAEWRNEAPRGEVSYMIETNGN-LIKHISIRTPSISNMDSC 325
Query: 368 MEFLCKG-HQLADVSAILGSLDIVFGEVDR 396
+++ K +AD + S D +R
Sbjct: 326 AKYMIKDVATVADAVSTYASSDPCVACAER 355
>gi|327310885|ref|YP_004337782.1| NADH-quinone oxidoreductase subunits B and D [Thermoproteus
uzoniensis 768-20]
gi|326947364|gb|AEA12470.1| NADH-quinone oxidoreductase subunits B and D [Thermoproteus
uzoniensis 768-20]
Length = 561
Score = 272 bits (696), Expect = 7e-71, Method: Composition-based stats.
Identities = 112/390 (28%), Positives = 179/390 (45%), Gaps = 11/390 (2%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
R + GPQHP + G +RL + +DG+++ V P G +HRG EKL E + F P +
Sbjct: 183 RGLVLVVGPQHPGS-GHMRLFVVVDGDVIADVKPDPGFVHRGVEKLAERRPFWTVPPLVE 241
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
++ + N Y AVE+ LG+E P R + +R L +E+GRI +HL ++ + +G
Sbjct: 242 KVSIMDSTNAILPYVHAVERALGLEPPPRAKALRSLMAELGRIRTHLYDLALHGIFIGHS 301
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
T +WGF + + R +G+R +AY PGGV +D+ + + + + L D
Sbjct: 302 TAFMWGFGMGDMIAEVQARVTGARTTSAYPIPGGVRRDLTTDGRQAVERLLAKLKARLPD 361
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
L N + + R +G + A G G RGSG +D R + PY+ Y +
Sbjct: 362 FEKLFLKNPVVRMRLEGVGVLDARKAASLGAVGPAARGSGIDYDARTASPYDGYELVRPR 421
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ + K GD R VR E+ S++ I + + L G + + P
Sbjct: 422 VVVEKGGDAMARTSVRWGEIWASIEYIEEALRALPD----GDILDEALLELSPNFRR--- 474
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
E + F + T+ GE + E +G VY+ + G R + P + +L+
Sbjct: 475 --EGVAGIFGVLTQ-LRPEPGEYHGLAEMARGTAYVYISATGSQYLRRVRFVTPSWRNLR 531
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
M KGH+LAD+ AI S E DR
Sbjct: 532 PMAEAMKGHRLADLPAIYMSFGYFPPEADR 561
>gi|261402605|ref|YP_003246829.1| carbon monoxide dehydrogenase, hydrogenase subunit CooH (CooH)
[Methanocaldococcus vulcanius M7]
gi|261369598|gb|ACX72347.1| carbon monoxide dehydrogenase, hydrogenase subunit CooH (CooH)
[Methanocaldococcus vulcanius M7]
Length = 376
Score = 272 bits (696), Expect = 7e-71, Method: Composition-based stats.
Identities = 98/388 (25%), Positives = 165/388 (42%), Gaps = 33/388 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
T+ GP HP LR+ L LDGE + +G +HRG EK++E K + + +R+
Sbjct: 3 TVPIGPIHPVLKEPLRIKLVLDGEKPVDAEIEMGYVHRGIEKIMEGKHCHKGIHLAERVC 62
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ +A +E + IEIP + + +RV+ E+ RI SHL+ + + T
Sbjct: 63 GICSYIHTMTFAECIEHISKIEIPDKARYLRVITCELERIHSHLIASAVYNLSIEHETLA 122
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+W RE +M E SG+R++ +Y GGV +DI E++++I D F + +I +
Sbjct: 123 MWLLNVREIVMDLMEMISGNRINMSYNVIGGVRRDINREMMDEIYKKLDEFEEEIKNIIE 182
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + R+ +IG + + G + R SG + + Y ELDF
Sbjct: 183 VFETGPLIALRSKDIGILPYHEVMRTRAVGPVCRASGLP-ESDWRLRHATYQELDFKPVW 241
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD + R +VR E+ ESV++IR+ + + V A
Sbjct: 242 RTEGDNFARMMVRHEEVLESVRLIRKALEYYEECSGDIRVKA------------------ 283
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
+ G+ EA +GE + G R IR P +L+A +
Sbjct: 284 -------------EIKGGKGVWKNEAHRGEVTYKMEITDGGIIKRIMIRTPTVMNLEAYK 330
Query: 370 FLCKGHQ-LADVSAILGSLDIVFGEVDR 396
++ K +AD + S+D +R
Sbjct: 331 YMLKTCPTVADAVSTYTSIDPCISCTER 358
>gi|323141863|ref|ZP_08076724.1| respiratory-chain NADH dehydrogenase, 30 Kd subunit
[Phascolarctobacterium sp. YIT 12067]
gi|322413610|gb|EFY04468.1| respiratory-chain NADH dehydrogenase, 30 Kd subunit
[Phascolarctobacterium sp. YIT 12067]
Length = 502
Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats.
Identities = 96/388 (24%), Positives = 162/388 (41%), Gaps = 26/388 (6%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
F + GP H GE + ++D + HRG EK +E T ++A+P +R+
Sbjct: 141 FEVPVGPIHAGIIEPGHFRFSQAGEAMLQLDAKLFFTHRGIEKAVEGLTPMEALPIVERI 200
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+ ++ AVEK E+P R LIR L +E+ R+ +H+ + VG
Sbjct: 201 CGACSVANTLSFCQAVEKCSEAEVPYRAWLIRTLAAEMERLYNHVGDTGNICAGVGFSPV 260
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
G +E LM E +G+R PGGV D+ ++E+I + D+
Sbjct: 261 ISMGARLKEYLMQLNEMLAGNRFLRGLIIPGGVQYDVTDAMLEEIEEVLREVEAVYADMV 320
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
++ F R G V+ E A+ GV R SG+ D RK Y Y ELDF++
Sbjct: 321 HIMWEQANFVNRIRTTGRVRPETAFDLAMVGVGARASGSTRDSRKDIGYGIYDELDFEVI 380
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
GD R VR+ E+ +S+K++RQ +++L + + A +
Sbjct: 381 TETAGDVEARIKVRIGEVAQSLKLVRQLISKL-------------RRNAETQLAVELGEL 427
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
+ HF + E+ +G+ L+ D + R +R+ Y + A+
Sbjct: 428 QQEEGHF-------------TWGISESARGDNLHCLLLDKEGRIDRLFVRSASYPNWPAL 474
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVDR 396
+G + D I S ++ + +DR
Sbjct: 475 TVAVQGDIIPDFPLINKSFELCYACIDR 502
>gi|159905901|ref|YP_001549563.1| NADH-ubiquinone oxidoreductase chain 49kDa [Methanococcus
maripaludis C6]
gi|159887394|gb|ABX02331.1| NADH-ubiquinone oxidoreductase chain 49kDa [Methanococcus
maripaludis C6]
Length = 375
Score = 272 bits (695), Expect = 8e-71, Method: Composition-based stats.
Identities = 107/389 (27%), Positives = 156/389 (40%), Gaps = 30/389 (7%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H RL L ++ EIV+ + IG+ HRG E+L+E +A +++
Sbjct: 5 EIAIGPVHSTMLEPHRLRLFIEDEIVKDAELTIGVNHRGVERLMEGLPVEKACILCEKIC 64
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + A E IEIP R IR++ E+ R+ SH L +G T
Sbjct: 65 GICSHIHLWSAARLAEIGCNIEIPERANHIRIIVEELERLHSHTLLFGHAFEILGHETMS 124
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPG--GVHQDIPPELVEDIGCWCDSFPSALNDI 187
+ F RE +M + SGSR+H + G +I + I + LN
Sbjct: 125 MRCFMLREPIMQVFFEISGSRVHYSCPIIGGIRPRCNISDTQIPHILEKVSKYEEGLNKF 184
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ + + + R ++G + + A + G RGS D+RK Y DFD
Sbjct: 185 IERMLNDPMIISRVKDVGVMDRKTAAKFHAVGPTARGSNVKSDMRKWGWVPEYDPYDFDE 244
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
+ GD + R VR E ESVKII+Q VN L D +I P
Sbjct: 245 ILFDSGDVFARLAVRFYECLESVKIIKQAVNALKDTA--------DKRIYNPNYE----- 291
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
+H FK EA +GE D + KIR P +L A
Sbjct: 292 ----LHEFKPIN-----------CYTEAQRGEQYYSYGLDDEGLVRQAKIRTPTATNLGA 336
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
ME + KG+ ++D I+ S D F DR
Sbjct: 337 MEDIVKGYHVSDAELIIASCDPCFTCTDR 365
>gi|254459439|ref|ZP_05072858.1| donor-ubiquinone reductase I, putative [Campylobacterales bacterium
GD 1]
gi|207083849|gb|EDZ61142.1| donor-ubiquinone reductase I, putative [Campylobacterales bacterium
GD 1]
Length = 362
Score = 272 bits (695), Expect = 8e-71, Method: Composition-based stats.
Identities = 97/389 (24%), Positives = 160/389 (41%), Gaps = 33/389 (8%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF- 65
++ I G QH + +R E + E + VD +G +HRG EK TK AV Y
Sbjct: 4 KTINIPIGSQHISLLEPVRFKFECENEKIIGVDSDVGFVHRGIEKACTTKFKFDAVGYVV 63
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
R+ + + +Y ++EKLL E+ + + +R+L E+ RI SH+L ++ + G
Sbjct: 64 ARVCGLCAITHSLSYTASIEKLLEAEVSQKAKYLRILLLELDRIHSHMLCLSHTCENAGF 123
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ +RE +M E +G+R+ Y GGV++D+ E+ + I +
Sbjct: 124 EAMFMRIMGDREDIMEIQELLTGNRIQFDYISIGGVNRDLSLEMSKKISKKLKLVEQKVL 183
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
D T N + IG + L++A+ + G + R SG D+R Y ++E+ +
Sbjct: 184 GYIDEFTNNWSLSLKFKGIGALSLDEAFRFNAIGPLARASGMNVDVRNEIDYLPFNEVGY 243
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
I GD R +VR+ E+ S+++ + L V
Sbjct: 244 KIQTHSDGDINARNVVRLNEILNSIEMCENILAGLPEGEIFTKVKGK------------- 290
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
P GE EAP+GE Y+ +G R +I+ P +A +
Sbjct: 291 -------------------PNGEAIVRFEAPRGELMYYVKGNGKAMLERVRIKTPTFASI 331
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEV 394
A + G AD AIL S D
Sbjct: 332 PAFSHIFVGENYADAPAILASFDPCLSCT 360
>gi|45359025|ref|NP_988582.1| energy conserving hydrogenase A large subunit [Methanococcus
maripaludis S2]
gi|45047900|emb|CAF31018.1| energy conserving hydrogenase A large subunit [Methanococcus
maripaludis S2]
Length = 375
Score = 272 bits (695), Expect = 8e-71, Method: Composition-based stats.
Identities = 94/389 (24%), Positives = 166/389 (42%), Gaps = 35/389 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ GP HP LR+ L ++GE V+ + +G +HRG E+++E K +L+ + +R+
Sbjct: 3 VVPIGPIHPILKEPLRIKLLVEGENVKGAEIDMGYVHRGIERIMEGKHYLKCIHLSERVC 62
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ ++A +E + IE+P + + +RV+ E+ RI SHL+ + + T
Sbjct: 63 GICSYIHTQSFAECIENMCDIEVPEKAKYLRVITCELERIHSHLIAAAVYNLTIEHETLG 122
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+W RE +M E +G+R++ + GGV D+ E+++ I D F + +I +
Sbjct: 123 IWMLNVRESIMDLLELITGNRVNMGFNVVGGVRLDLNKEILDKIHKKIDEFEEDVKNIIE 182
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAW-DLRKSQPYECYSELDFDIP 248
+ + R+ +IG + ++ +G + R SG D R E Y L+F
Sbjct: 183 VFETGPLIGMRSKHIGKIGYKEIMKTRAAGPVARASGIPESDWRIRH--ETYKALNFKPD 240
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
GD Y R +VR E+ SV++IR+ + + +
Sbjct: 241 WRNEGDNYARMMVRHDEVLTSVELIRRALEHYAESSGIVRNK------------------ 282
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
GE Y EA +GE + G R IR P +L+A
Sbjct: 283 -----------AEIRATEGEWY--NEAHRGEVYYKIAITDGGLIKRIIIRTPTVMNLEAY 329
Query: 369 EFLCKGHQ-LADVSAILGSLDIVFGEVDR 396
+++ K +AD A S+D +R
Sbjct: 330 KYMIKDCPTIADAVATYTSIDPCVSCTER 358
>gi|256374475|ref|YP_003098135.1| NADH dehydrogenase (quinone) [Actinosynnema mirum DSM 43827]
gi|255918778|gb|ACU34289.1| NADH dehydrogenase (quinone) [Actinosynnema mirum DSM 43827]
Length = 358
Score = 272 bits (695), Expect = 9e-71, Method: Composition-based stats.
Identities = 122/388 (31%), Positives = 184/388 (47%), Gaps = 49/388 (12%)
Query: 10 TINFGPQHPAAHGVLRLILEL-DGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
++ GP HP+AHG RL L + D E++ +P +G LHRG EKL E + + Q + +R
Sbjct: 19 VVDLGPLHPSAHGAYRLRLTVRDDEVITSAEPLVGHLHRGAEKLFEVRDYRQVLTLANRH 78
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
D++A E A ALAVE++ G+++P R Q +R L E+ R+++HL+ + V A
Sbjct: 79 DWLAAFCNELAVALAVERMTGMDVPPRAQWLRALLCELNRVMAHLVFLAPLTDPVAAA-- 136
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
RE + E ASG R+H R GG+ +D+P E + D+
Sbjct: 137 -----RGREAVQAVLEEASGGRIHFMANRIGGLREDVPAGWAERVAGALDAVEV------ 185
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
+G + DA G +G + R SG DLR+ P Y ELD
Sbjct: 186 ------PEVPTGLAGLGVLSRADALARGVTGPIGRASGVDLDLRRDDPLPAYRELDVRPS 239
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
+ GD + R + ++ ++V + R+C+ RL G GPV+ PK V
Sbjct: 240 VRDGGDAHARVACMVDDLAQAVALARECLRRLPG----GPVNLRLPKAV----------- 284
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
P G VY VEAP G GV+L S G P+R K+R P + ++QA+
Sbjct: 285 --------------KAPEGSVYTRVEAPLGVSGVHLASRGEKTPWRLKLRTPSFNNVQAL 330
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVDR 396
L G +A + +LGS +V G++DR
Sbjct: 331 SALLPGTPVAQLPLVLGSFAVVVGDIDR 358
>gi|150399225|ref|YP_001322992.1| NADH dehydrogenase (quinone) [Methanococcus vannielii SB]
gi|150011928|gb|ABR54380.1| NADH dehydrogenase (quinone) [Methanococcus vannielii SB]
Length = 375
Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats.
Identities = 103/389 (26%), Positives = 157/389 (40%), Gaps = 30/389 (7%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H RL L ++ EIV+ + IG+ HRG E+L+E +A +++
Sbjct: 5 EIAIGPVHATMLEPHRLRLFIEDEIVKDAELTIGVNHRGVERLMEGLPVEKACILCEKIC 64
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + A VE IE+P R IR++ E+ R+ SH L +G T
Sbjct: 65 GICSHIHLWSAARVVEIGCKIEVPERANHIRLIVEELERLHSHTLLFGHAFEILGHETMS 124
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPG--GVHQDIPPELVEDIGCWCDSFPSALNDI 187
+ F RE +M + SG+R+H + G +I + I + + L +
Sbjct: 125 MRSFMLREPIMQLFFEISGNRVHYSCPIIGGVRPRCNISDSQIPVILDRIEKYEEGLTKL 184
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ + + R NIG + + A + G RGS D+RK Y +FD
Sbjct: 185 INRTLNDPMIVSRVKNIGILDRKTAAKFHAVGPTARGSNIKSDVRKMGYVPEYDPYEFDE 244
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
+ GD R VR E ES+KII+Q +N L D +I P
Sbjct: 245 ILLDGGDVLSRVAVRFYECFESIKIIKQAINMLKD--------CKDNRIYNPNYE----- 291
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
+H FK EA +GE D + + K+R P +L A
Sbjct: 292 ----LHKFKPID-----------CYTEAQRGEQYYSYGLDDEGQVRQAKVRTPTATNLGA 336
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
ME + KG+ ++D I+ S D F DR
Sbjct: 337 MEEIVKGYHVSDAELIIASCDPCFTCTDR 365
>gi|313683181|ref|YP_004060919.1| ech hydrogenase subunit e [Sulfuricurvum kujiense DSM 16994]
gi|313156041|gb|ADR34719.1| ech hydrogenase subunit E [Sulfuricurvum kujiense DSM 16994]
Length = 361
Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats.
Identities = 103/390 (26%), Positives = 166/390 (42%), Gaps = 35/390 (8%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFL--QAVPY 64
++ I G QH + +R E + E + VD +G +HRG E L T++F Q
Sbjct: 3 KTVQIPLGSQHISLLEPIRFKFECENEKIIGVDADVGFVHRGVE-LACTRSFEFKQVGYV 61
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
R+ + + +Y LA EKLLG E R + +R+L E+ RI SH+L + A + G
Sbjct: 62 VARVCGLCAITHSLSYTLAAEKLLGYEANDRIKYLRMLMVELDRIHSHMLCLAHTAENAG 121
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
+ +RE +M E SG+R+ Y GGV++D+ PEL + +
Sbjct: 122 FEALFMQIMSDRELVMEVQEAISGNRVQFDYISIGGVNRDLTPELSALVHKNLTLLSEKV 181
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ + L N + +G + LEDA+ + G + R +G A D+R Y L
Sbjct: 182 DMLIGLFENNWSLSLKYKGVGVLSLEDAYTYNALGPLARAAGLATDVRAETNDFPYEALG 241
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
+ + + GD + R VR+ E+ S+++ R ++ L
Sbjct: 242 YKMILESTGDIHARNFVRLREIVNSIEMCRNIIDNLPSGEIQ------------------ 283
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
+ P GE VEAP+GE + +G N R +I+ P ++
Sbjct: 284 --------------EKAKGKPNGEAVVRVEAPRGELFYLVRGNGQNMLERVRIKTPTFSA 329
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEV 394
+ AM + KG + AD AIL S D
Sbjct: 330 IPAMMEVFKGAEYADAPAILASFDPCMSCT 359
>gi|15669216|ref|NP_248021.1| formate hydrogenlyase subunit 5 [Methanocaldococcus jannaschii DSM
2661]
gi|42559931|sp|Q58433|Y1027_METJA RecName: Full=Uncharacterized protein MJ1027
gi|1499869|gb|AAB99031.1| formate hydrogenlyase, subunit 5 [Methanocaldococcus jannaschii DSM
2661]
Length = 377
Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats.
Identities = 93/389 (23%), Positives = 147/389 (37%), Gaps = 31/389 (7%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP HP RL L ++ EI++ + IG+ +RG E ++E + +++
Sbjct: 9 EIAIGPVHPTMLEPHRLRLFIEDEIIKEAELVIGVNYRGIELIMEGLPPEKISILSEKIC 68
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ E+ IE+P R + IR + E+ R+ SH+L +G T
Sbjct: 69 GICSHIHVWCNVTVTERGCDIEVPERAEYIRAIVEELERLHSHMLLFGHAFEVLGFETMA 128
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIP--PELVEDIGCWCDSFPSALNDI 187
F RE +M +G R + GG+ + + + F L +
Sbjct: 129 FRAFMIREPIMQILGEITGGRAQYSCPIIGGIRPRCNIKESKIPALLERLEKFEENLKKL 188
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ + + R ++G + + A G RGSG D+RK Y +F+
Sbjct: 189 LERTVNDPMIMSRIKDVGVLDKKTAKKLHALGPTARGSGIHSDMRKMGQVPVYDNFEFEE 248
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
+ GD + R VR E ESVKIIRQ + L D +I P
Sbjct: 249 IVFDDGDVFSRLAVRFYECFESVKIIRQGLKDLPNL---------DKRIYNPNYE----- 294
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
+ FK EA +G+ D + + KIR P +L
Sbjct: 295 ----LKEFKPID-----------VYNEAQRGQVYYSYGLDENGRVRQVKIRTPTATNLAC 339
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
ME + GH ++D I+ S D F DR
Sbjct: 340 MEAILPGHHVSDAELIIASCDPCFTCTDR 368
>gi|297493926|gb|ADI40685.1| NADH dehydrogenase Fe-S protein 2 [Miniopterus schreibersii]
Length = 292
Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats.
Identities = 159/251 (63%), Positives = 202/251 (80%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
+ T+NFGPQHPAAHGVLRL++EL GE+V + DPHIGLLHRGTEKLIE KT+LQA+PYFDR
Sbjct: 42 NLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDR 101
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
LDYV+ M E AY+LAVEKLL I+ P R Q IRV++ EI R+L+H++ VTT A+D+GA+T
Sbjct: 102 LDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVMFGEITRLLNHIMAVTTHALDIGAMT 161
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
P W FEEREK+ FYER SG+RMHAAY RPGGVHQD+P L++DI + +F ++++
Sbjct: 162 PFFWMFEEREKMFEFYERVSGARMHAAYVRPGGVHQDLPLGLMDDIYQFSKNFSLRIDEV 221
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
++LT NRI++ R V+IG V EDA +GFSGVM+RGSG WDLRK+QPY+ Y ++DFD+
Sbjct: 222 EEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVDFDV 281
Query: 248 PIGKHGDCYDR 258
PIG GDCYDR
Sbjct: 282 PIGSRGDCYDR 292
>gi|126465553|ref|YP_001040662.1| membrane bound protein complex subunit mbxL [Staphylothermus
marinus F1]
gi|126014376|gb|ABN69754.1| Membrane bound protein complex subunit mbxL [Staphylothermus
marinus F1]
Length = 375
Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats.
Identities = 128/404 (31%), Positives = 197/404 (48%), Gaps = 41/404 (10%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K++ T+ GPQHP A G + L LDGE V +D G LHRG EK++E + + +
Sbjct: 2 SKAKVLTVFLGPQHPGAPGNVGFKLLLDGERVLDIDLIPGFLHRGFEKMMEYRRWDMDLV 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
R+ P + E Y A+E++ GIE P + + +RV+ +E R+ SHLL + A +
Sbjct: 62 MSARICVEDPDHIELTYTHAMEQIFGIEPPEKAKYVRVIVAEFSRLASHLLWMMYFAGPI 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
A W RE+++ +++ SG R++ Y PGGV DIP + E
Sbjct: 122 AARYATSWAIAAREEILKWFDYVSGHRIYHHYIFPGGVRWDIPSDFKEKTLKVLKVIKPL 181
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
++DI D + IF++R ++G +K DA G +G +RGSG +DLRK Y+ Y E+
Sbjct: 182 IDDIRDGFFYHPIFEKRARDMGRLKPGDAIRLGATGPTLRGSGVKFDLRKVLKYDAYGEI 241
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DF+IP G++GD YDR LVR+ EM S++IIRQ V ++ +
Sbjct: 242 DFEIPSGEYGDSYDRALVRLREMYISMEIIRQAVEKMPTEGPYR---------------- 285
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGN--------KPYRC 355
Y +P GE VE+ +GEF +++ PYR
Sbjct: 286 --------------YRLPATIPAGEGIGRVESARGEFLAHILQRPPGARRYSKPLSPYRI 331
Query: 356 KIRAPGYAHL-QAMEFLCKGH--QLADVSAILGSLDIVFGEVDR 396
K R P AHL ++ + +AD+ ++GS D ++DR
Sbjct: 332 KFRGPTMAHLTTVLKHIVHNEEITIADLPVLIGSFDPCPPDIDR 375
>gi|256810098|ref|YP_003127467.1| NADH dehydrogenase (ubiquinone), 30 kDa subunit [Methanocaldococcus
fervens AG86]
gi|256793298|gb|ACV23967.1| NADH dehydrogenase (ubiquinone), 30 kDa subunit [Methanocaldococcus
fervens AG86]
Length = 374
Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats.
Identities = 89/389 (22%), Positives = 150/389 (38%), Gaps = 31/389 (7%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP HP RL L ++ EI++ + IG+ +RG E ++E + +++
Sbjct: 6 EIAIGPVHPTMLEPHRLRLFIEDEIIKDAELTIGVNYRGIELIMEGLPPEKISILSEKIC 65
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + E+ IE+P R IR + E+ R+ SH+L +G T
Sbjct: 66 GICSHIHVWTNVMVTERGCDIEVPERADYIRAIVEELERLHSHMLLFGHAFEVLGFETMA 125
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPG--GVHQDIPPELVEDIGCWCDSFPSALNDI 187
F RE +M +G R + G +I + + + F L +
Sbjct: 126 FRAFMIREPIMQILGEITGGRAQYSCPIIGGIRPRCNINESKIPGLLERLEKFEENLKKL 185
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ + + R ++G + + A G RGSG D+RK Y +F+
Sbjct: 186 LERTVNDPMIMARIKDVGVLDKKTAKKLHAVGPTARGSGIHSDMRKMGQVPVYDNFEFEE 245
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
+ GD + R VR E ES+KIIRQ + L +K + + ++ P K ++
Sbjct: 246 ILFDDGDVFSRLAVRFYECFESIKIIRQGLKELPNLDKK--IYNPNYELKPFKPINVYN- 302
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
EA +G+ D + + K+R P +L
Sbjct: 303 --------------------------EAQRGQVYYSYGLDENGRVRQAKVRTPTATNLAC 336
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
ME + GH ++D I+ S D F DR
Sbjct: 337 MEAILPGHHVSDAELIIASCDPCFTCTDR 365
>gi|225629592|ref|ZP_03787611.1| NADH dehydrogenase I, D subunit [Wolbachia endosymbiont of
Muscidifurax uniraptor]
gi|225591554|gb|EEH12575.1| NADH dehydrogenase I, D subunit [Wolbachia endosymbiont of
Muscidifurax uniraptor]
Length = 249
Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats.
Identities = 161/244 (65%), Positives = 203/244 (83%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
++ +NFGPQHPAAHGVLRL+LE+DGE++ER DPHIGLLHRGTEKLIE KT+LQA+PYFD
Sbjct: 5 KTMMLNFGPQHPAAHGVLRLVLEMDGEVIERADPHIGLLHRGTEKLIEHKTYLQALPYFD 64
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYV+PM+QEHAY+L VEKLL E+PIR + +RVL+ E+ RIL+HLLNV++QA+DVGA+
Sbjct: 65 RLDYVSPMSQEHAYSLCVEKLLQCEVPIRAKYLRVLFCELTRILNHLLNVSSQALDVGAM 124
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP LW FEEREK++ FYERASG+R HAAY RPGG+ D+P +L+EDI + + FP ++D
Sbjct: 125 TPLLWLFEEREKILEFYERASGARFHAAYIRPGGIAADVPEDLIEDIAKFIEQFPKYIDD 184
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ +LLT NRI+KQR V I + ++ A WGFSG M+R +G AWDLRKSQPYE Y +LDFD
Sbjct: 185 VDELLTENRIWKQRTVGISAISIKQALDWGFSGPMLRAAGLAWDLRKSQPYEIYDQLDFD 244
Query: 247 IPIG 250
IPI
Sbjct: 245 IPIA 248
>gi|150402631|ref|YP_001329925.1| NADH dehydrogenase (quinone) [Methanococcus maripaludis C7]
gi|150033661|gb|ABR65774.1| NADH dehydrogenase (quinone) [Methanococcus maripaludis C7]
Length = 375
Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats.
Identities = 94/389 (24%), Positives = 165/389 (42%), Gaps = 35/389 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ GP HP LR+ L ++GE V+ + +G +HRG E+++E K +L+ + +R+
Sbjct: 3 VVPIGPIHPILKEPLRIKLLVEGENVKGAEIDMGYVHRGIERIMEGKHYLKCIHLSERVC 62
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ ++A +E + IE+P + + +RV+ E+ RI SHL+ + + T
Sbjct: 63 GICSYIHTQSFAECIENMCKIEVPDKAKYLRVITCELERIHSHLIAAAVYNLTIEHETMG 122
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+W RE M E +G+R++ + GGV D+ E+++ I D F + +I +
Sbjct: 123 IWLLNVRETAMDLLELITGNRVNMGFNVVGGVRLDLNKEILDTIHKKIDEFEEDVKNIIE 182
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAW-DLRKSQPYECYSELDFDIP 248
+ R+ +IG + ++ +G + R SG D R E Y L+F
Sbjct: 183 AFETGPLIAMRSKHIGKIGYKEIMKTRAAGPVARASGIPESDWRIRH--ETYQALNFKPD 240
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
GD Y R +VR E+ SV++IR+ + + + +
Sbjct: 241 WRDEGDNYARMMVRHDEVLTSVELIRRALEQYTECSGIVRNK------------------ 282
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
GE Y EA +GE + G R IR P +L+A
Sbjct: 283 -----------AEIRATEGEWY--NEAHRGEVYYKIAITDGGLIKRIIIRTPTVMNLEAY 329
Query: 369 EFLCKGHQ-LADVSAILGSLDIVFGEVDR 396
+++ K +AD A S+D +R
Sbjct: 330 KYMIKDCPTIADAVATYTSIDPCVSCTER 358
>gi|258593564|emb|CBE69905.1| Hydrogenase, large subunit-like protein (HycE-like) [NC10 bacterium
'Dutch sediment']
Length = 527
Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats.
Identities = 81/387 (20%), Positives = 152/387 (39%), Gaps = 33/387 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H ++GE + ++ + +H+G E+L ET ++ V +R+
Sbjct: 172 EITVGPVHAGIIEPGHFRFSVEGETIVNLESRLYFVHKGIERLFETVPLIRGVELAERIS 231
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + A+ A+E L ++IP R +RV E+ R+ +H+ +V D G
Sbjct: 232 GDSSVAHALAFCQALESLTALQIPPRAAYLRVALLELERLYNHIADVGAICTDTGFAVAN 291
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
RE ++ R +G R+ GGV D E + D S +++ +
Sbjct: 292 THAMRIREDILRLNARLAGHRLLRGTLIAGGVRCDFTAEQIADARETVRRAVSDFDEVVE 351
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ N + R G + + A G R SG D R+ P+ Y++L +P+
Sbjct: 352 IALNNGLVLDRLHGTGHLSNQTARELQVVGPAARASGIDRDARRDHPFAAYADLPPHVPV 411
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD + R +VR+ E RE+ +I + + + P+
Sbjct: 412 YSEGDVWARLMVRVEEAREAAHLIMRALGEIPEGKVSAPL-------------------- 451
Query: 310 SLIHHFKLYTEGYHVPVG-EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
+P G + VE +G +L++ N+ R KI+ P +A+ A+
Sbjct: 452 ------------PALPAGASGFGLVEGWRGPIWHWLVAGEQNRLTRAKIKDPSFANWPAL 499
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVD 395
+ + + D + S ++ + D
Sbjct: 500 HYAILKNIVPDFPLVNKSFNLSYAGND 526
>gi|15668694|ref|NP_247493.1| carbon monoxide dehydrogenase hydrogenase subunit CooH
[Methanocaldococcus jannaschii DSM 2661]
gi|42559928|sp|Q57935|Y515_METJA RecName: Full=Uncharacterized protein MJ0515
gi|1591218|gb|AAB98504.1| carbon monoxide dehydrogenase, hydrogenase subunit CooH (cooH)
[Methanocaldococcus jannaschii DSM 2661]
Length = 380
Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats.
Identities = 101/393 (25%), Positives = 167/393 (42%), Gaps = 34/393 (8%)
Query: 6 SRSF-TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
S + TI GP HP LR+ L LDGE + +G +HRG EK++E K + +
Sbjct: 2 SENMATIPIGPIHPVLKEPLRIKLVLDGEKPVDAEIEMGYVHRGIEKIMEGKHCHKGIHL 61
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
+R+ + +A +E + IEIP + + +RV+ E+ RI SHL+ + +
Sbjct: 62 AERVCGICSYVHTMTFAECIEHISKIEIPDKAKYLRVVTCELERIHSHLIASAVYNLSIE 121
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
T +W RE +M E +G+R++ Y GGV +DI E++++I D F L
Sbjct: 122 HETLAMWLLNVREIIMDLMEMITGNRVNMGYNVIGGVRRDINREMMDEIYKKLDIFEDEL 181
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+I ++ + R+ IG + + G + RGSG + + Y EL
Sbjct: 182 KNIIEVFETGPLIALRSKEIGILPYHEVMRTRAVGPICRGSGLP-ESDWRLRHSTYQELK 240
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
F + GD + R +VR E+ ESV++IR+ + + V A
Sbjct: 241 FKPVWREEGDNFARMMVRHEEIIESVRLIREALEHYEECSGDIRVKA------------- 287
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
+ G+ EAP+GE + G R IR P +
Sbjct: 288 ------------------EIKGGKGEWRNEAPRGEVTYRMEITDGGIIKRIMIRTPTVMN 329
Query: 365 LQAMEFLCKGHQ-LADVSAILGSLDIVFGEVDR 396
L+A +++ K +AD + S+D +R
Sbjct: 330 LEAYKYMLKTCPTVADAVSAYTSIDPCVSCTER 362
>gi|289191769|ref|YP_003457710.1| NADH-ubiquinone oxidoreductase chain 49kDa [Methanocaldococcus sp.
FS406-22]
gi|288938219|gb|ADC68974.1| NADH-ubiquinone oxidoreductase chain 49kDa [Methanocaldococcus sp.
FS406-22]
Length = 377
Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats.
Identities = 100/388 (25%), Positives = 164/388 (42%), Gaps = 33/388 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
TI GP HP LR+ L LDGE + +G +HRG EK++E K + + +R+
Sbjct: 3 TIPIGPIHPVLKEPLRIKLVLDGERPVDAEIEMGYVHRGIEKIMEGKHCHKGIYLAERVC 62
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ +A +E + IEIP + + +RV+ E+ RI SHL+ + + T
Sbjct: 63 GICSYVHTMTFAECIEHISKIEIPDKAKYLRVVTCELERIHSHLIASAVYNLSIEHETLA 122
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+W RE +M E +G+R++ Y GGV +DI E++ +I D F L +I +
Sbjct: 123 MWLLNVREIIMDLMEMITGNRVNMGYNVIGGVRRDINREMMNEIYKKLDIFEEELKNIIE 182
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + R+ IG + + G + RGSG + + Y EL F
Sbjct: 183 VFETGPLIALRSKGIGILPYHEVMRTRAVGPVCRGSGLP-ESDWRLRHSTYQELKFKPVW 241
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
+ GD + R +VR E+ ESV++IR+ + + V A
Sbjct: 242 REEGDNFARMMVRHEEVIESVRLIRKALELYEECSGDIRVKA------------------ 283
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
+ G+ EAP+GE + G R IR P +L+A +
Sbjct: 284 -------------EIKGGKGEWRNEAPRGEVTYRMEITDGGIIKRIMIRTPTVMNLEAYK 330
Query: 370 FLCKGHQ-LADVSAILGSLDIVFGEVDR 396
++ K +AD + S+D +R
Sbjct: 331 YMLKTCPTVADAISAYTSIDPCVSCTER 358
>gi|256810300|ref|YP_003127669.1| NADH dehydrogenase (quinone) [Methanocaldococcus fervens AG86]
gi|256793500|gb|ACV24169.1| NADH dehydrogenase (quinone) [Methanocaldococcus fervens AG86]
Length = 377
Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats.
Identities = 100/389 (25%), Positives = 167/389 (42%), Gaps = 35/389 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
T+ GP HP LR+ L LDGE + +G +HRG E+++E K + + +R+
Sbjct: 3 TVPIGPIHPVLKEPLRIKLVLDGEKPVDAEIEMGYVHRGIERIMEGKHCHKGIYLSERVC 62
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ +A +E + IEIP + + +RV+ E+ RI SHL+ + + T
Sbjct: 63 GICSYVHTMTFAECIENISKIEIPDKAKYLRVVTCELERIHSHLIASAVYNLAIEHETLA 122
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+W RE +M E +G+R++ Y GGV +DI E++++I D F + +I +
Sbjct: 123 MWLLNAREIIMDLMEMITGNRVNMGYNVIGGVRRDINREMMDEIYKKLDIFEEEIKNIIE 182
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAW-DLRKSQPYECYSELDFDIP 248
+ + R+ I + G + RGSG D R P Y EL F
Sbjct: 183 VFETGPLIALRSKGIAVLPYHKIMRTRAVGPVCRGSGLPESDWRLRHPT--YQELKFKPV 240
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
+ GD + R +VR E+ ES+++IR+ + + V RA++K
Sbjct: 241 WREEGDNFARMMVRHEEIFESIRLIREALEHYEECSGDVRV-----------RAEIKG-- 287
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
G+ EAP+GE + G R IR P +L+A
Sbjct: 288 ------------------GKGEWRNEAPRGEVTYKMEITDGGIIKRIMIRTPTVMNLEAY 329
Query: 369 EFLCKGHQ-LADVSAILGSLDIVFGEVDR 396
+++ K +AD + S+D +R
Sbjct: 330 KYMLKTCPTVADALSAYTSIDPCVSCTER 358
>gi|134045162|ref|YP_001096648.1| NADH dehydrogenase (ubiquinone) [Methanococcus maripaludis C5]
gi|132662787|gb|ABO34433.1| membrane-bound hydrogenase subunit ehaO [Methanococcus maripaludis
C5]
Length = 376
Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats.
Identities = 94/389 (24%), Positives = 165/389 (42%), Gaps = 35/389 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ GP HP LR+ L ++GE V+ + +G +HRG E+++E K +L+ + +R+
Sbjct: 3 VVPIGPIHPILKEPLRIKLLVEGENVKGAEIDMGYVHRGIERIMEGKHYLKCIHLSERVC 62
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ ++A +E + IE+P + + +RV+ E+ RI SHL+ + + T
Sbjct: 63 GICSYIHTQSFAECIENMCKIEVPDKAKYLRVITCELERIHSHLIAAAVYNLTIEHETIG 122
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+W RE M E +G+R++ + GGV D+ E+++ I D F + +I +
Sbjct: 123 IWLLNVRETSMDLLELITGNRVNMGFNVVGGVRLDLNKEILDTIHKKIDEFEEDVKNIIE 182
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAW-DLRKSQPYECYSELDFDIP 248
+ R+ +IG + ++ +G + R SG D R E Y L+F
Sbjct: 183 AFETGPLIALRSKHIGNIGYKEIMKTRAAGPVARASGIPESDWRIRH--ETYQALNFKPD 240
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
GD Y R +VR E+ SV++IR+ + + + +
Sbjct: 241 WRDEGDNYARMMVRHDEVLTSVELIRRALEQYAECSGIVRNK------------------ 282
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
GE Y EA +GE + G R IR P +L+A
Sbjct: 283 -----------AEIRATEGEWY--NEAHRGEVYYKIAITDGGLIKRIIIRTPTVMNLEAY 329
Query: 369 EFLCKGHQ-LADVSAILGSLDIVFGEVDR 396
+++ K +AD A S+D +R
Sbjct: 330 KYMIKDCPTIADAVATYTSIDPCVSCTER 358
>gi|296109960|ref|YP_003616909.1| hypothetical protein Metin_1295 [Methanocaldococcus infernus ME]
gi|295434774|gb|ADG13945.1| hypothetical protein Metin_1295 [Methanocaldococcus infernus ME]
Length = 373
Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats.
Identities = 104/391 (26%), Positives = 174/391 (44%), Gaps = 39/391 (9%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
TI GP HPA +R+ L L+GE V+ +G HRG EK++E K +A+ +R+
Sbjct: 3 TIPIGPIHPALKEPMRIKLVLEGERPVDVELEMGYAHRGIEKIMEGKHCHKAIHLAERVC 62
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ H +A VEK+ IE+P + + +RV+ E+ RI SHLL ++T + + T
Sbjct: 63 GICSNVHTHTFAQCVEKISKIEVPDKAKYLRVVIYELERIHSHLLAISTYCLAIEHETLG 122
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
LW RE +M +E +G+R++ ++ GGV +DI E+ E+I +S + ++ +
Sbjct: 123 LWLLNIREPIMDLFELITGNRINLSFNVIGGVRKDITKEMAEEIIDKINSIKEDVENVMN 182
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA---AWDLRKSQPYECYSELDFD 246
+ R+ IG +K +D G + R SG W LRK + Y EL F
Sbjct: 183 AFEKAPLVGLRSKGIGVLKYKDIMKTRAVGPIARASGLPESDWRLRK----KIYKELKFK 238
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ K GD + R +VR E+ ES++++ + + L + V A
Sbjct: 239 VKWRKEGDNFARTMVRFEEILESIRLVEKALEHYLECSGDYRVRA--------------- 283
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+ GE EA +GE + G + IR P + +
Sbjct: 284 ----------------EIKAGEGEVRNEAHRGEVLYQMAITSGGIVKKINIRTPSVMNFE 327
Query: 367 AMEFLCKGHQ-LADVSAILGSLDIVFGEVDR 396
+ +++ K +AD A + D +R
Sbjct: 328 SYKYMIKTCPTVADAVATYVTTDPCVACAER 358
>gi|289193110|ref|YP_003459051.1| NADH-ubiquinone oxidoreductase chain 49kDa [Methanocaldococcus sp.
FS406-22]
gi|288939560|gb|ADC70315.1| NADH-ubiquinone oxidoreductase chain 49kDa [Methanocaldococcus sp.
FS406-22]
Length = 374
Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats.
Identities = 90/389 (23%), Positives = 150/389 (38%), Gaps = 31/389 (7%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP HP RL L ++ EI++ + IG+ +RG E ++E + +++
Sbjct: 6 EIAIGPVHPTMLEPHRLRLFIEDEIIKEAELTIGVNYRGIELIMEGLPPEKISILSEKIC 65
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ E+ IE+P R + IR + E+ R+ SH+L +G T
Sbjct: 66 GICSHIHVWCNVTVTERGCDIEVPERAEYIRAIVEELERLHSHMLLFGHAFEVLGFETMA 125
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPG--GVHQDIPPELVEDIGCWCDSFPSALNDI 187
F RE +M +G R + G +I + + + F L +
Sbjct: 126 FRAFMIREPIMQILGEITGGRAQYSCPIIGGIRPRCNINESKIPALLERLEKFEENLKKL 185
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ + + R ++G + + A G RGSG D+RK Y +F+
Sbjct: 186 LERTVNDPMIMARIKDVGVLDKKTAKKLHAVGPTARGSGIHSDMRKMGQVPVYDNFEFEE 245
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
+ GD + R VR E ESVKII+Q + L +K + + ++ P K ++
Sbjct: 246 ILFDDGDVFSRLAVRFYECFESVKIIKQGLKILPELDKK--IYNPNYELKPFKPINIYN- 302
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
EA +G+ D + + KIR P +L
Sbjct: 303 --------------------------EAQRGQVYYSYGLDEHGRVRQVKIRTPTATNLAC 336
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
ME + GH ++D I+ S D F DR
Sbjct: 337 MEAILPGHHVSDAELIIASCDPCFTCTDR 365
>gi|154150666|ref|YP_001404284.1| NADH dehydrogenase (ubiquinone), 30 kDa subunit [Candidatus
Methanoregula boonei 6A8]
gi|153999218|gb|ABS55641.1| NADH dehydrogenase (ubiquinone), 30 kDa subunit [Methanoregula
boonei 6A8]
Length = 526
Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats.
Identities = 90/387 (23%), Positives = 144/387 (37%), Gaps = 34/387 (8%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
+ + GP H + GE V ++ + HRG EKL E K V + +
Sbjct: 173 YQVPVGPVHAGIIEPGHFRFSVIGETVFNLEIRLFYTHRGIEKLAEGKDPAACVRVAEAV 232
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+A+E+L GI +P R IR + E RI SHL +++ DV
Sbjct: 233 SGDESAANATGLCMAIERLSGITVPDRAWHIRTVLCESERICSHLGDLSGMLTDVAFALG 292
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
RE+ E+ SGSR PGG+ +DIP E + + F
Sbjct: 293 ASHFAVLREEFFREQEKLSGSRFLRGMILPGGISRDIPVETLARYREFLARFAKEFRAGL 352
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
++ R G ++ +G + R SG+ D+R PY Y
Sbjct: 353 AIVLSTPSVIDRFTQTGIIRKPLLGPLNITGPVARASGSGRDVRVDSPYGMYDRFIPVPH 412
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
GD R+ V+ E+ +S+ +I + + + GPV ++D
Sbjct: 413 PLNDGDVLARFTVKAAEVLDSLSLIEKVIAGM----PEGPVISADG-------------- 454
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
V G A VE P+GE ++ + +R K+R Y + A+
Sbjct: 455 ---------------VGDGAALALVEGPRGENLCWVEIRE-GRVFRYKVRTASYCNWLAI 498
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVD 395
E G+ +AD I SL++ + D
Sbjct: 499 EHAAPGNIIADFPVINKSLNLSYAGTD 525
>gi|159905594|ref|YP_001549256.1| NADH dehydrogenase (quinone) [Methanococcus maripaludis C6]
gi|159887087|gb|ABX02024.1| NADH dehydrogenase (quinone) [Methanococcus maripaludis C6]
Length = 375
Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats.
Identities = 95/389 (24%), Positives = 164/389 (42%), Gaps = 35/389 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ GP HP LR+ L ++GE V+ + +G +HRG E+++E K +L+ + +R+
Sbjct: 3 VVPIGPIHPILKEPLRIKLLVEGENVKGAEIDMGYVHRGIERIMEGKHYLKCIHLSERVC 62
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ ++A +E + IE P + + +RV+ E+ RI SHL+ + + T
Sbjct: 63 GICSYIHTQSFAECIENMCKIEAPDKAKYLRVITCELERIHSHLIAAAVYNLTIEHETIG 122
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+W RE +M E +G+R++ + GGV D+ E+++ I D F + +I +
Sbjct: 123 IWLLNVRETVMDLLELITGNRVNMGFNVVGGVRLDLNKEILDTIHKKIDEFEEDVKNIIE 182
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAW-DLRKSQPYECYSELDFDIP 248
+ R+ +IG + ++ +G + R SG D R E Y L+F
Sbjct: 183 AFETGPLIALRSKHIGNIGYKEIMKTRAAGPVARASGIPESDWRIRH--ETYQALNFKPD 240
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
GD Y R +VR E+ SV++IR+ + + V
Sbjct: 241 WRDDGDNYARMMVRHDEVLTSVELIRRALELYAESSGVVRNK------------------ 282
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
GE Y EA +GE + G R IR P +L+A
Sbjct: 283 -----------AEIRATEGEWY--NEAHRGEVYYKIAITDGGLIKRIIIRTPTVMNLEAY 329
Query: 369 EFLCKGHQ-LADVSAILGSLDIVFGEVDR 396
+++ K +AD A S+D +R
Sbjct: 330 KYMIKDCPTIADAVATYTSIDPCVSCTER 358
>gi|256113335|ref|ZP_05454197.1| NADH dehydrogenase subunit D [Brucella melitensis bv. 3 str. Ether]
gi|265994745|ref|ZP_06107302.1| NADH-quinone oxidoreductase subunit D [Brucella melitensis bv. 3
str. Ether]
gi|262765858|gb|EEZ11647.1| NADH-quinone oxidoreductase subunit D [Brucella melitensis bv. 3
str. Ether]
Length = 245
Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats.
Identities = 202/245 (82%), Positives = 225/245 (91%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + + R+F INFGPQHPAAHGVLRL+LELDGE+VERVDPHIGLLHRGTEKL+E KT+LQ
Sbjct: 1 MAETQVRNFNINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLMEAKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVPY DRLDYVAPMNQEHAYALAVE+LL IE+P RGQLIRVLYSEIGRIL+HLLNVTTQA
Sbjct: 61 AVPYLDRLDYVAPMNQEHAYALAVERLLDIEVPKRGQLIRVLYSEIGRILNHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREK+MVFYERA G+RMHAAYFRPGGVHQD+P +L+EDIG W D F
Sbjct: 121 MDVGALTPPLWGFEEREKVMVFYERACGARMHAAYFRPGGVHQDLPDQLIEDIGKWIDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ L ++ DL+T NRIFKQRNV+IG VKLEDAW WGFSGVM+RGSGAAWDLRKSQPYECY
Sbjct: 181 FTTLKNLDDLITPNRIFKQRNVDIGVVKLEDAWAWGFSGVMVRGSGAAWDLRKSQPYECY 240
Query: 241 SELDF 245
SE++F
Sbjct: 241 SEMEF 245
>gi|297526161|ref|YP_003668185.1| NADH dehydrogenase (quinone) [Staphylothermus hellenicus DSM 12710]
gi|297255077|gb|ADI31286.1| NADH dehydrogenase (quinone) [Staphylothermus hellenicus DSM 12710]
Length = 375
Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats.
Identities = 126/404 (31%), Positives = 199/404 (49%), Gaps = 41/404 (10%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K+R T+ GPQHP A G + L LDGE V +D G LHRG EK++E + + +
Sbjct: 2 SKARVLTVFLGPQHPGAPGNVGFKLLLDGERVLDIDLIPGFLHRGFEKMMEYRRWDMDLV 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
R+ P + E Y A+E++ GIE P + + +RV+ +E R+ +HLL + A +
Sbjct: 62 LSARVCVEDPDHVELTYTHAMEQIFGIEPPEKAKYVRVIVAEFSRLANHLLWMMHFAGPI 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
A W RE+++ +++ +G R++ Y PGG+ +IP + E
Sbjct: 122 AARYATSWAIAAREEILKWFDYVAGHRVYHHYIFPGGIRWNIPSDFKEKTLKVLKVIKPL 181
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
++D+ D + IF++R ++G +K DA G +G +RGSG +DLRK+ Y+ Y E+
Sbjct: 182 IDDLRDGFFYHPIFEKRARDMGRLKPGDAIRLGATGPTLRGSGVKFDLRKALKYDAYGEI 241
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DF+IP G++GD YDR LVR+ EM S++IIRQ V ++ GP P +
Sbjct: 242 DFEIPTGEYGDSYDRALVRLREMYISMEIIRQAVEKMPT---EGPYRYRLPAAI------ 292
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGN--------KPYRC 355
P GE VE+ +GEF +++ PYR
Sbjct: 293 ---------------------PTGEGIGRVESARGEFLAHILQRPPGAHRYSKPLNPYRI 331
Query: 356 KIRAPGYAHL-QAMEFLCKGH--QLADVSAILGSLDIVFGEVDR 396
K R P AHL ++ + +AD+ ++GS D ++DR
Sbjct: 332 KFRGPTMAHLTTVLKHIVHNEEITVADLPVLIGSFDPCAPDIDR 375
>gi|58042484|gb|AAW63682.1| NADH dehydrogenase subunit 7 [Eichhornia crassipes]
Length = 288
Score = 266 bits (679), Expect = 7e-69, Method: Composition-based stats.
Identities = 167/292 (57%), Positives = 212/292 (72%), Gaps = 4/292 (1%)
Query: 19 AAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
AAHGV R +LE++GE+VER +PHIG LHRGTEKLIE KT+LQA+PY DR DYV+ M QEH
Sbjct: 1 AAHGVSRSVLEMNGEVVERAEPHIGSLHRGTEKLIEYKTYLQALPYSDRSDYVSTMAQEH 60
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREK 138
A++ AVE+LL E+P+R Q IRVL+ EI RI +H L TT AMDVGA TP LW FEEREK
Sbjct: 61 AHSSAVERLLNCEVPLRAQYIRVLFREITRISNHSLASTTHAMDVGASTPFLWAFEEREK 120
Query: 139 LMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFK 198
L+ FYER G+RMHA++ RPGGV QD+P L DI F S ++++ ++ TGNRI+K
Sbjct: 121 LLEFYERVPGARMHASFIRPGGVAQDLPLGLCRDIDSSTQQFASRIDELEEMSTGNRIWK 180
Query: 199 QRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDR 258
QR V+IGTV + A WGFSGVM+RG G WD R++ PY+ + + D D+P+G GD YDR
Sbjct: 181 QRLVDIGTVTAQQAKDWGFSGVMLRGRGVCWDSRRAAPYDVHDQSDPDVPVGTRGDRYDR 240
Query: 259 YLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
Y +R+ EMR+SV+II QC N++ G + A D K+ PP R MK SMES
Sbjct: 241 YCIRIEEMRQSVRIIVQCPNQM----PSGMIKADDRKLCPPSRGRMKLSMES 288
>gi|291191992|gb|ADD83069.1| hydrogenase 3 large subunit [Enterobacter cloacae]
Length = 480
Score = 265 bits (678), Expect = 8e-69, Method: Composition-based stats.
Identities = 91/366 (24%), Positives = 150/366 (40%), Gaps = 34/366 (9%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVPYF 65
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 143 KNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLS 202
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
DR+ + AY +VE +GI +P R Q+IR + E+ R+ SHLLN+ VG
Sbjct: 203 DRVCGICGFAHSTAYTTSVENGMGIVVPERAQMIRAILLEVERLHSHLLNLGLACHFVGF 262
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ + F RE M E +G+R GG+ +D+ + + +
Sbjct: 263 DSGFMQFFRVREASMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRDVQ 322
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 323 ELVDMLLSTPNIEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPM 382
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ + D R VR+ E+ ++ +I ++ L G
Sbjct: 383 TVHSEQGCDVISRLKVRINEVFTALNMIDFGLDNLPGGP--------------------- 421
Query: 306 RSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
L EG+ +P EAP+G+ + ++ K YR + RA YA+
Sbjct: 422 -----------LMVEGFTYIPNRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYAN 470
Query: 365 LQAMEF 370
+ +
Sbjct: 471 WPTLRY 476
>gi|307265394|ref|ZP_07546950.1| NADH dehydrogenase (quinone) [Thermoanaerobacter wiegelii Rt8.B1]
gi|326390321|ref|ZP_08211880.1| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus JW
200]
gi|306919508|gb|EFN49726.1| NADH dehydrogenase (quinone) [Thermoanaerobacter wiegelii Rt8.B1]
gi|325993598|gb|EGD52031.1| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus JW
200]
Length = 382
Score = 265 bits (678), Expect = 9e-69, Method: Composition-based stats.
Identities = 123/398 (30%), Positives = 188/398 (47%), Gaps = 34/398 (8%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+K + + FGP HP HG +LE+ G + +V P+ G LHRG EKL+E K ++Q
Sbjct: 14 EKDNLTVYELFFGPNHPGMHGNFGYVLEMIGTEIVKVRPNAGHLHRGFEKLMEQKLWVQN 73
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+ R+ P E AY A+EK+L ++IP R + +R + E+ R+ S L+ + A
Sbjct: 74 IALVPRICVADPDPNEVAYCTAIEKILRVDIPDRAKFLRTITLEMSRLSSFLMGMGALAA 133
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
VG T +R+ ++ +E +G+R++ + PGGV D+P VE + D
Sbjct: 134 AVGLYTAMNIMTADRDLILDLFEWLTGARVYHMFSIPGGVRNDLPDGFVERLYKVLDHLE 193
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
L + LL N I +R +G V EDA +G +G +R SG +D+R PY Y
Sbjct: 194 KRLIEYDKLLFENPIIHKRLKGLGYVSKEDAVKYGLTGPNLRASGNPYDVRVDDPYAAYP 253
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
LD + + GD R + +E E++ +IR+ + +
Sbjct: 254 YLDVRVITQEGGDALTRAIQIRLEFEETINLIRRALKTMP-------------------- 293
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
E I VP GE YA VE+ KGEFG Y++SDGG KPYR +R P
Sbjct: 294 -------EGEIRLNLGNLSALKVPKGEAYAKVESSKGEFGYYVVSDGGMKPYRVAVRGPS 346
Query: 362 YAHLQA----MEFLCKGHQLADVSAILGSLDIVFGEVD 395
L A + ++ DV+A + SL I ++D
Sbjct: 347 ---LPAGLLLAQKHLPKMKIDDVAAWMASLAICPPDID 381
>gi|303243650|ref|ZP_07329991.1| nickel-dependent hydrogenase large subunit [Methanothermococcus
okinawensis IH1]
gi|302485892|gb|EFL48815.1| nickel-dependent hydrogenase large subunit [Methanothermococcus
okinawensis IH1]
Length = 376
Score = 265 bits (678), Expect = 9e-69, Method: Composition-based stats.
Identities = 89/390 (22%), Positives = 159/390 (40%), Gaps = 37/390 (9%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ GP +P +R+ L ++GE V + +G +HRG EK++E K +L+ + +R+
Sbjct: 3 VVPIGPINPVLKEPVRIKLVVEGERVVGSEIEMGYVHRGIEKIMEGKHYLKGIYLSERVC 62
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ +A +E + IE+P + + +RV+ +E+ RI SHL+ M + T
Sbjct: 63 GICSYIHTQTFAECIEYISNIEVPDKARYLRVITTELERIHSHLIAAAVYDMSIEHETLA 122
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+W RE +M E SG+R++ + GGV DI E+++ I D + +I +
Sbjct: 123 MWCLNAREHVMDLLEMISGNRVNTGFNVIGGVRLDINKEIIDKIYKKVDELEEDVKNILE 182
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + R IG + ++ G + R S + + Y EL F
Sbjct: 183 VFKTGPLINLRGKGIGVLGYKEIMKTRAVGPVARASALP-ESDWRLRHSTYKELKFKPVW 241
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD R +VR E+ S+ +IR+ + + + +AD+K
Sbjct: 242 EDGGDNSARMMVRHEEVMASIGLIRKALELYEESSGGVRI-----------KADVKG--- 287
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAV--EAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
Y EA +GE + G R IR P +L+A
Sbjct: 288 -------------------GYGEWKNEAHRGEVYYKIAITDGGLIKRIMIRTPTVMNLEA 328
Query: 368 MEFLCKGHQ-LADVSAILGSLDIVFGEVDR 396
+++ K ++D S+D +R
Sbjct: 329 YKYMLKTCPTVSDAVTTYTSIDPCVSCTER 358
>gi|150400740|ref|YP_001324506.1| NADH dehydrogenase (quinone) [Methanococcus aeolicus Nankai-3]
gi|150013443|gb|ABR55894.1| NADH dehydrogenase (quinone) [Methanococcus aeolicus Nankai-3]
Length = 374
Score = 265 bits (678), Expect = 9e-69, Method: Composition-based stats.
Identities = 103/389 (26%), Positives = 151/389 (38%), Gaps = 31/389 (7%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H A RL L ++ EI++ + IG+ HRG E+L+E +A +++
Sbjct: 5 EIAIGPIHSAILEPHRLRLFIEDEIIKDAELTIGVNHRGIERLMEGLPPEKATILTEKIC 64
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + E IE+P R IRV+ E+ R+ SH L +G T
Sbjct: 65 GICSHIHLWSAVRVCEIGSDIEVPERANHIRVIVEELERLHSHTLLFGHAFEILGHETMS 124
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPG--GVHQDIPPELVEDIGCWCDSFPSALNDI 187
+ F RE +M SGSR+ + G DI + + + ALN I
Sbjct: 125 MRAFMLREPIMQTLFDISGSRVQYSCPIIGGIRPRCDIKDSQISAYLERMEKYEDALNKI 184
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ + R +IG + + A + G RGSG D+RK Y +FD
Sbjct: 185 IGRTINDPLLVSRMKDIGVLDRKTAAKYHALGPTARGSGIKSDMRKMGYVPEYDCFEFDE 244
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
I GD Y R VR E ESVKII+Q + L + K P
Sbjct: 245 IILDDGDVYARVAVRFYECIESVKIIKQALKELPSLPE---------KFYNPNYE----- 290
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
I FK EA +G+ D + + K+R P +L
Sbjct: 291 ----IKEFKPID-----------CYTEAQRGQQYYTYGVDNEGRVRQAKVRTPTATNLAC 335
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
ME + K + ++D I+ S D F DR
Sbjct: 336 MEEVLKDYHVSDAELIVASCDPCFTCTDR 364
>gi|213610190|ref|ZP_03370016.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Typhi str. E98-2068]
Length = 514
Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats.
Identities = 114/309 (36%), Positives = 175/309 (56%), Gaps = 5/309 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +
Sbjct: 210 TDNEDFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 269
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 270 PYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQD 329
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + + P
Sbjct: 330 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLEWMPK 389
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R+ + ++A WG +G +R +G +D+RK +PY Y
Sbjct: 390 RLDSYEKAALRNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKWRPYSGYEN 449
Query: 243 LDFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF++P+ G DCY R ++++ E+R+S++I++QC++ + GP A P PP +
Sbjct: 450 FDFEVPVGGGVSDCYTRVMLKVEELRQSLRILQQCLDNM----PEGPFKADHPLTTPPPK 505
Query: 302 ADMKRSMES 310
+ +E+
Sbjct: 506 ERTLQHIET 514
>gi|261402757|ref|YP_003246981.1| formate hydrogenlyase, subunit 5 [Methanocaldococcus vulcanius M7]
gi|261369750|gb|ACX72499.1| formate hydrogenlyase, subunit 5 [Methanocaldococcus vulcanius M7]
Length = 373
Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats.
Identities = 94/389 (24%), Positives = 147/389 (37%), Gaps = 31/389 (7%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP HP RL L ++ EI++ + IG+ +RG E ++E + +++
Sbjct: 6 EIAIGPVHPTMLEPHRLRLFIEDEIIKEAELVIGVNYRGIELIMEGLPPEKISIISEKIC 65
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ E+ IE+P R + IR + E R+ SH+L +G T
Sbjct: 66 GICSHIHVWCNVTVAERGSEIEVPERAEYIRAIVEEYERLHSHMLLFGHAFEVLGFETMA 125
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPG--GVHQDIPPELVEDIGCWCDSFPSALNDI 187
F RE +M + +G R + G +I ++ + + F L +
Sbjct: 126 FRAFMIREPIMQMLKEITGGRAQNSCPIIGGIRPRCNIRDSMIPSLLERLEKFEEKLKKL 185
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ + + R ++G + + A G RGSG D+RK Y +F+
Sbjct: 186 LERTVNDPMIMSRIKDVGVLDKKTAKKLHALGPTARGSGVHSDMRKMGQVPIYDNFEFEE 245
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
+ GD + R VR E ESVKII+Q +N L D KI P
Sbjct: 246 ILFDDGDVFSRLAVRFYECLESVKIIKQGLNDL---------KTLDNKIYNPNYE----- 291
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
I FK EA +G+ D + KIR P +L
Sbjct: 292 ----IKEFKPID-----------VYNEAQRGQVYYSYGVDENGRVRHVKIRTPTATNLAC 336
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
ME + H ++D I+ S D F DR
Sbjct: 337 MEAILPDHHISDAELIIASCDPCFTCTDR 365
>gi|20093901|ref|NP_613748.1| Ni,Fe-hydrogenase III large subunit [Methanopyrus kandleri AV19]
gi|19886842|gb|AAM01678.1| Ni,Fe-hydrogenase III large subunit [Methanopyrus kandleri AV19]
Length = 409
Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats.
Identities = 95/388 (24%), Positives = 152/388 (39%), Gaps = 37/388 (9%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
+ GP HP LR+ L + GE V +G HRG EK++E + +A +R+
Sbjct: 29 VPVGPNHPILKEPLRIKLAVRGEEVVDCKVEMGYCHRGIEKIMEGMPWQKAAFLAERVCG 88
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ + VEKL + RG +RVL E+ RI SHL+ + T +
Sbjct: 89 ICSHAHNMCFIGGVEKLAEGDPAPRGLFLRVLVQELDRIQSHLIANAAYFYSIEHETMFV 148
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
W RE+++ E +G+R+ + GGV D+ + + ++ D+ + +
Sbjct: 149 WNMNTRERVLDCIEEITGNRILTGWNVVGGVRMDVTEDQLNNVLETLDAIRDDVITYRRI 208
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAW-DLRKSQPYECYSELDFDIPI 249
+ K R+ +G + + + G R SG D+R +P Y EL F
Sbjct: 209 AKNDPFIKLRSRGVGVITKDHIRKYRVVGPQARASGVPESDMRLQEP--VYPELGFKPVY 266
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
K GD R LVR E +S+++I + V+ L +
Sbjct: 267 RKEGDNLARILVRYDECLQSIELIERIVDELPEGRHRREL-------------------- 306
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
V G V VEAP+GE + G R IR P +++ +E
Sbjct: 307 -------------EVNAGHVDNRVEAPRGELVYDMELAPGGVVKRVTIRTPSVPNIRVLE 353
Query: 370 FLCKGHQ-LADVSAILGSLDIVFGEVDR 396
+ G +AD A SLD +R
Sbjct: 354 AIAPGSPSIADAVATYASLDPCVACNER 381
>gi|297620124|ref|YP_003708229.1| NADH-ubiquinone oxidoreductase chain 49kDa [Methanococcus voltae
A3]
gi|297379101|gb|ADI37256.1| NADH-ubiquinone oxidoreductase chain 49kDa [Methanococcus voltae
A3]
Length = 376
Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats.
Identities = 89/388 (22%), Positives = 169/388 (43%), Gaps = 33/388 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP HP LR+ L ++GE V+ + +G +HRG E+++E K++++ + +R+
Sbjct: 3 VIPIGPIHPILKEPLRIKLLVEGENVKGAEIDMGYVHRGIERIMEGKSYMKGIHLSERVC 62
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ +A +E + I+ P + +RV+ +E+ RI SHL+ + + T
Sbjct: 63 GICSYIHTQTFAECIEHMCNIDTPEKAGHLRVITTELERIHSHLIAAAVYNLTIEHETIA 122
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+W RE +M E +G+R++ Y GGV D+ ++++ + D F +N+I +
Sbjct: 123 MWMLNAREIVMNLLELITGNRVNMGYNVVGGVRLDLKKDIIDQVYKELDLFEDDMNNIIE 182
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + + R+ +IG + ++ +G + R SG + + Y + +F
Sbjct: 183 VFRSGPMIRLRSKDIGRLGYKELMKTRAAGPVARASGIP-ESDWRLRSDLYGQYNFKPCW 241
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD + R +VR E+ S+ +IRQ ++ + GP+
Sbjct: 242 RSEGDNFARMMVRHEEIMVSIDLIRQALDMY--QKCSGPIRTK----------------- 282
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
++IH E EA +GE + G R IR P +L+A +
Sbjct: 283 AIIH------------ATEGEYRNEAHRGEVYYKMAITEGGLIKRIIIRTPTVMNLEAYK 330
Query: 370 FLCKGHQ-LADVSAILGSLDIVFGEVDR 396
++ K + D A S+D +R
Sbjct: 331 YMLKTCPTVPDAVATYTSIDPCISCTER 358
>gi|307825299|ref|ZP_07655519.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Methylobacter
tundripaludum SV96]
gi|307733755|gb|EFO04612.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Methylobacter
tundripaludum SV96]
Length = 524
Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats.
Identities = 87/389 (22%), Positives = 148/389 (38%), Gaps = 33/389 (8%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
++ I GP H + GE++ ++ +G +H+G EK+ E + R
Sbjct: 167 TYEIPVGPVHAGIIEPGHFRFQAVGELILNLEERLGYVHKGIEKIAEGREPESLARLAGR 226
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ + A A+E+ G+ IP R LIR + +E RI +H+ ++ DV +
Sbjct: 227 VSGDTTVGHCWAACRAMEQTAGVIIPPRAALIRGILAERERIANHMGDIGAICNDVAFVF 286
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
+ RE + G R+ PGGV D+ E I L ++
Sbjct: 287 AQMQFTRLRELWLRTNATVFGHRLLMDKIVPGGVACDLSGESCALIKKEITELRKELAEV 346
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
L N + R G + + A +G G + R SG D+R+ PY Y ++ +
Sbjct: 347 ILALDLNSSLEDRLYTAGFLSEQTAAAFGTLGYVGRASGQDKDVRRDTPYAPYDQVTVKV 406
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
+ GD R VR E+R +++++ + ++RL+
Sbjct: 407 ALETQGDIASRLWVRYKEIRAALRLLEEFIDRLVAG------------------------ 442
Query: 308 MESLIHHFKLYTEGYHVPVG-EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+L +E G E VE +GE Y+ D NK R R P +
Sbjct: 443 --------ELCSEWRTPAAGSEGLGIVEGWRGEIISYIRFDADNKIARFYPRDPSQLNWP 494
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVD 395
A+E L + + D SL+ + D
Sbjct: 495 ALEKLVLNNIVPDFPVCNKSLNGSYSGND 523
>gi|67968342|dbj|BAE00242.1| NADH dehydrogenase subunit 7 [Selaginella uncinata]
Length = 393
Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats.
Identities = 133/396 (33%), Positives = 182/396 (45%), Gaps = 9/396 (2%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
++ + ++ GP HP HGV R I DGE +P G HRG EK E +T +Q
Sbjct: 5 TERGNTTVVSTGPHHPPMHGVPRPIANSDGENAIDREPVSGYSHRGMEKTAENRTIVQHP 64
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P+ R DY A E A E+ + I+ P R R++ E+ RI H + D
Sbjct: 65 PHVTRRDYSATTPTEAVTVNAPERSIDIQAPKRASHTRIIMPELSRIAPHSSWLGPFMAD 124
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+GA TP ERE + E A+G RM + R GG D P V+ CD P
Sbjct: 125 IGAQTPFSRIPREREMVYDPSEAATGMRMTHNHSRAGGAAVDSPYGRVDKRLDPCDYSPP 184
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+++ +T N IF +R +G E+A WG SG M R GA D R+ +EC+ E
Sbjct: 185 RVDEHERPITRNPIFSKRVEGVGIASGEEAINWGSSGPMPRAPGARRDPRRVDHHECHDE 244
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
D K GD R+LVR+ EMRE +Q GP S+ + +
Sbjct: 245 SDRRGVRQKEGDPLARHLVRIGEMREPAGTTQQA----SRLTPGGPYENSEAR---RLKM 297
Query: 303 DMKRSMESLIHHF--KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ + + F K + P E Y VEAPKGE G+ + D P+RCKIR P
Sbjct: 298 NSMEDWNNFEYRFISKKPSPTSRPPEREHYVRVEAPKGESGISSMGDDSTSPWRCKIRPP 357
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G + Q + +G + AD I GS+DI GEVDR
Sbjct: 358 GSINPQILPQPVEGMKSADTMTIPGSIDITTGEVDR 393
>gi|150399524|ref|YP_001323291.1| NADH dehydrogenase (quinone) [Methanococcus vannielii SB]
gi|150012227|gb|ABR54679.1| NADH dehydrogenase (quinone) [Methanococcus vannielii SB]
Length = 378
Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats.
Identities = 96/388 (24%), Positives = 170/388 (43%), Gaps = 33/388 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ GP HP +R+ L ++GE V+ + +G +HRG E+++E K +L+ + +R+
Sbjct: 6 VVPIGPIHPVLKEPIRIKLLVEGENVKGAELDMGYVHRGIERIMEGKHYLKGIHLAERVC 65
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ +A +E + I+ P + + +RV+ E+ R+ SHL+ + + T
Sbjct: 66 GICSYIHTQTFAECIENMCNIKAPEKAEYLRVVTCELERLHSHLIAAAVYNLAIEHETIG 125
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+W RE +M E +G+R++ + GGV D+ EL++ I D F + +I +
Sbjct: 126 IWMLNARETIMDLLESITGNRVNMGFNVVGGVRLDLNKELLDSIYKKLDEFEDDIVNIVE 185
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ R+ +IGT+ ++ +G + R SG + +E Y L+F
Sbjct: 186 AFQNGPLIGMRSKHIGTIGYKEIMKTRAAGPVARASGIP-ESDWRLRHETYQALNFKPDW 244
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD Y R +VR EM S+K+IR+ + L G V +A++K S
Sbjct: 245 RNEGDNYARMMVRHDEMITSIKLIRRALE--LYSECSGHVRT---------KAEIKGS-- 291
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
EG EA +GE + G R IR P +L+A +
Sbjct: 292 ----------EGEWKN--------EAHRGEVYYKIAITDGGLIKRIIIRTPTVMNLEAYK 333
Query: 370 FLCKGHQ-LADVSAILGSLDIVFGEVDR 396
++ K ++D A S+D +R
Sbjct: 334 YMLKTCPTISDAVATYTSIDPCVSCTER 361
>gi|171186235|ref|YP_001795154.1| NADH dehydrogenase (quinone) [Thermoproteus neutrophilus V24Sta]
gi|170935447|gb|ACB40708.1| NADH dehydrogenase (quinone) [Thermoproteus neutrophilus V24Sta]
Length = 407
Score = 262 bits (671), Expect = 4e-68, Method: Composition-based stats.
Identities = 114/391 (29%), Positives = 181/391 (46%), Gaps = 13/391 (3%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
R + GPQHP + G +RL + LDG+I++ V P G +HRG EKL E + + +P +
Sbjct: 29 RGLVVVVGPQHPGS-GHMRLFVVLDGDIIKEVVPDPGFVHRGVEKLAENRPYWTLIPLVE 87
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
+ + MN LA+EK LG+E P R + +R +E+ RI +HL ++ + +G
Sbjct: 88 KASIMDSMNITLPITLALEKALGLEPPPRAKYLRTAMAELSRIRTHLYDLALLGIFLGHS 147
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
T +WGF + + + +G+R AY PGGV +D+ E +E + L D
Sbjct: 148 TAFMWGFALMDLYAEVFAKITGARTTVAYPVPGGVRRDVKREHIEAVEKLLRKTEEKLRD 207
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ N + K R +G V + A G G R +G D+RK+ PY+ Y ELDF+
Sbjct: 208 FKTVFLDNPVTKARLEGVGVVDAKRAAELGVVGPFARAAGIDHDVRKAAPYDAYPELDFE 267
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKV-GPVSASDPKIVPPKRADMK 305
+ K GD R LVR EM S+ I+RQ + L + + + +P+ +
Sbjct: 268 VVTEKAGDAMARVLVRWREMYVSMDIVRQALKNLPEGDVIDQALLFKNPEYRREGMGGVL 327
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
+ Y G Y ++L + G + YR + P + +L
Sbjct: 328 GVYTYMYPEPGEYAAVAEAARGATY-----------IHLWTTGTQRVYRMRYVTPSWRNL 376
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+AM +G +LAD+ A+ S E DR
Sbjct: 377 KAMAEAMRGERLADMPAVYMSFGYFPPEADR 407
>gi|150400804|ref|YP_001324570.1| NADH-ubiquinone oxidoreductase chain 49kDa [Methanococcus aeolicus
Nankai-3]
gi|150013507|gb|ABR55958.1| NADH-ubiquinone oxidoreductase chain 49kDa [Methanococcus aeolicus
Nankai-3]
Length = 378
Score = 262 bits (671), Expect = 5e-68, Method: Composition-based stats.
Identities = 93/389 (23%), Positives = 154/389 (39%), Gaps = 35/389 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ GP HP +RL L ++GE V + +G +HRG E+++E K L+ + +R+
Sbjct: 3 VVPVGPIHPVLKEPIRLKLIVEGEKVIGSELEMGYVHRGIERIMEGKHHLKGIHLAERVC 62
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + +A +E IEIP + + +R++ E+ RI SHL+ + + T
Sbjct: 63 GICSYIHTYTFAECIENYSKIEIPDKAKYLRLITCELERIHSHLIASAVYNISIEHETLA 122
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+WG RE +M E +G+R++ Y GGV DI E+++ I + L ++
Sbjct: 123 MWGLSAREHVMDLLEMITGNRVNMGYNLVGGVRADINKEMIDKIHKKLNELREDLKNLVS 182
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAA-WDLRKSQPYECYSELDFDIP 248
+ R IG +K D G + R S D R P Y EL F
Sbjct: 183 AFETGPLIGLRGKGIGVLKYADIMKTRAVGPVARASALPECDWRLRHP--VYKELKFKPV 240
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
+ GD + R VR E+ S+ +I Q + + V
Sbjct: 241 WFEDGDNHARMAVRHHEVLSSIDLIEQAIELYNECSGRVRVK------------------ 282
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
+ GE EA +GE + + R IR P +L+AM
Sbjct: 283 -------------PEIKGGEGEWRNEAHRGEVCYKIATTNNGLIKRIMIRTPTVMNLEAM 329
Query: 369 EFLCKGHQ-LADVSAILGSLDIVFGEVDR 396
+ + K ++D S+D +R
Sbjct: 330 KIMFKTCPTISDAVTTYTSIDPCISCTER 358
>gi|304314559|ref|YP_003849706.1| energy-converting hydrogenase A, subunit O [Methanothermobacter
marburgensis str. Marburg]
gi|5734541|emb|CAB52770.1| hydrogenase large subunit [Methanothermobacter thermautotrophicus]
gi|302588018|gb|ADL58393.1| energy-converting hydrogenase A, subunit O [Methanothermobacter
marburgensis str. Marburg]
Length = 370
Score = 262 bits (669), Expect = 8e-68, Method: Composition-based stats.
Identities = 90/390 (23%), Positives = 158/390 (40%), Gaps = 37/390 (9%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
+ GP HP +RL ++ GE V + + G +HRG E+++ KT+ +A+ +R+
Sbjct: 1 MILPLGPMHPGYKEPIRLKVKTRGEKVLKAEIEYGYVHRGIERVMRNKTWQKAIYLSERV 60
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+ +A A E + +E P R Q +R L +E+ RI SHL+ +T + T
Sbjct: 61 CGICSYIHTQTFAEAFEAISEVEAPPRAQFLRALTNELDRIQSHLIANSTYFKALDHETM 120
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
++ RE +M E +G+R++ + GGV D + + I +
Sbjct: 121 FMYMLALREPVMDAIELLTGNRVNMGWNVVGGVRMDASEDHLSRIREIIVDLEREFDRYV 180
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
++ + R+ ++G + E+A G + R SG +D R+ P LDF
Sbjct: 181 EMFEHGPLIGLRSRDVGYMSREEAEKARAVGPIGRASGIRYDFREDHPT-YRDHLDFRTI 239
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
GD + R + R E+R S+ +I+Q ++ + GPV
Sbjct: 240 WRDEGDNFARVMNRFDEIRVSIDLIKQVIDSI----PSGPVRRK---------------- 279
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA- 367
V G EAP+GE + ++G IR P ++ A
Sbjct: 280 -------------VDVKAGYGEWRNEAPRGEVAYMIETNGN-LIKNISIRTPSIMNIDAC 325
Query: 368 MEFLCKG-HQLADVSAILGSLDIVFGEVDR 396
+++ + +AD A S D +R
Sbjct: 326 AKYMLRDVATVADAVATYASADPCIACAER 355
>gi|325959024|ref|YP_004290490.1| NADH dehydrogenase (quinone) [Methanobacterium sp. AL-21]
gi|325330456|gb|ADZ09518.1| NADH dehydrogenase (quinone) [Methanobacterium sp. AL-21]
Length = 381
Score = 262 bits (669), Expect = 8e-68, Method: Composition-based stats.
Identities = 90/391 (23%), Positives = 160/391 (40%), Gaps = 38/391 (9%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
+ GP HP LRL L+ GE V + G +HRG E++++ KT+ + + +R+
Sbjct: 1 MILPIGPVHPGLKEPLRLKLKTRGEKVLSAEIDYGYIHRGIERIMQGKTWQKGIFLSERV 60
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+ +A EK+ G P+R Q +RVL +E+ RI SHLL +T V T
Sbjct: 61 CGICSYVHTQTFAETFEKIAGEYAPLRAQYLRVLTNELDRIQSHLLANSTYFKAVEHETL 120
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
++ RE +M E +G+R++ + GGV DI ++ I + +
Sbjct: 121 FMYMLALREPVMDAIELLTGNRVNMGWNVVGGVKMDIKQTHMDQIMQIMNKLETDYGRYV 180
Query: 189 DLLTGNR-IFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ + R+ ++G + E+A G + R SG D+R+ + D+++
Sbjct: 181 QIYEDGPLVGGLRSKDVGVMTREEAIMARAVGPIGRASGLEHDVREQH-HTYKDNFDWNV 239
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
K GD + R + R E+ ES+ +I+Q +N + +
Sbjct: 240 VWRKEGDNFARTMNRFNEVWESISLIKQVINNIPEGD----------------------- 276
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
+ +P G EAP+GE + ++G IR P ++ A
Sbjct: 277 ----------VRKKIDIPAGVAEWRNEAPRGEVTYSIETNGN-LIKNISIRTPSIMNIDA 325
Query: 368 -MEFLCKGHQ-LADVSAILGSLDIVFGEVDR 396
+++ +AD A + D +R
Sbjct: 326 CAKYMLNDVPTVADAVATYATSDPCIACAER 356
>gi|15678426|ref|NP_275541.1| formate hydrogenlyase, subunit 5 [Methanothermobacter
thermautotrophicus str. Delta H]
gi|2621460|gb|AAB84904.1| formate hydrogenlyase, subunit 5 [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 370
Score = 262 bits (669), Expect = 9e-68, Method: Composition-based stats.
Identities = 88/390 (22%), Positives = 154/390 (39%), Gaps = 37/390 (9%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
+ GP HP +RL ++ GE V + + G +HRG E+++ KT+ +A+ +R+
Sbjct: 1 MILPLGPMHPGYKEPIRLKVKTRGEKVLKAEIEYGYVHRGIERVMRNKTWQKAIYLSERV 60
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+ +A A E + +E P R Q +R L +E+ RI SHL+ +T + T
Sbjct: 61 CGICSYIHTQTFAEAFEAISEVEAPPRAQFLRALTNELDRIQSHLIANSTYFKALDHETM 120
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
++ RE +M E +G+R++ + GGV D + I +
Sbjct: 121 FMYMLALREPVMDAIELLTGNRVNMGWNVVGGVRMDASESHLSMIREIIVDLEREFDRYV 180
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
++ + R+ +G + E+A G + R SG +D R+ P LDF
Sbjct: 181 EMFEHGPLIGLRSREVGYMSQEEAEKARAVGPIGRASGIRYDFREDHPT-YRDHLDFRTI 239
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
GD + R + R E+R S+ +I+Q ++ + G
Sbjct: 240 WRDDGDNFARVMNRFDEIRVSIDLIKQVIDDMPGGP------------------------ 275
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA- 367
V G EAP+GE + ++G IR P ++ A
Sbjct: 276 ---------VRTKVDVKAGYGEWRNEAPRGEVAYMIETNGN-LIKNISIRTPSIMNIDAC 325
Query: 368 MEFLCKG-HQLADVSAILGSLDIVFGEVDR 396
+++ + +AD A S D +R
Sbjct: 326 AKYMLRDVATVADAVATYASADPCIACAER 355
>gi|297517327|ref|ZP_06935713.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli OP50]
Length = 512
Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats.
Identities = 115/307 (37%), Positives = 173/307 (56%), Gaps = 5/307 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP+AHG R++L+LDGE + P IG HRG EK+ E +++ +
Sbjct: 210 TENEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 269
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 270 PYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQD 329
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 330 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPK 389
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L N I K R+ + ++A WG +G +R +G +D+RK++PY Y
Sbjct: 390 RLASYEKAALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYEN 449
Query: 243 LDFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF+IP+ G DCY R ++++ E+R+S++I+ QC+N + GP A P PP +
Sbjct: 450 FDFEIPVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNM----PEGPFKADHPLTTPPPK 505
Query: 302 ADMKRSM 308
+ +
Sbjct: 506 ERTLQHI 512
>gi|323254450|gb|EGA38265.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008282]
Length = 511
Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats.
Identities = 113/305 (37%), Positives = 172/305 (56%), Gaps = 5/305 (1%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +
Sbjct: 210 TDNEDFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 269
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GI +P R +IRV+ SE+ RI SHLL ++T D
Sbjct: 270 PYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQD 329
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + + P
Sbjct: 330 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLEWMPK 389
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R+ + ++A WG +G +R +G +D+RK +PY Y
Sbjct: 390 RLDSYEKAALRNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKWRPYSGYEN 449
Query: 243 LDFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
DF++P+ G DCY R ++++ E+R+S++I++QC++ + GP A P PP +
Sbjct: 450 FDFEVPVGGGVSDCYTRVMLKVEELRQSLRILQQCLDNM----PEGPFKADHPLTTPPPK 505
Query: 302 ADMKR 306
+
Sbjct: 506 ERTLQ 510
>gi|149195033|ref|ZP_01872125.1| NADH dehydrogenase subunit D [Caminibacter mediatlanticus TB-2]
gi|149134746|gb|EDM23230.1| NADH dehydrogenase subunit D [Caminibacter mediatlanticus TB-2]
Length = 557
Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats.
Identities = 115/392 (29%), Positives = 191/392 (48%), Gaps = 25/392 (6%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
+++GP HPA+ G +RL + +GE +E+V+P IG + R E L E K F+ + +R
Sbjct: 188 RTVLHWGPTHPAS-GPIRLKVFTNGENIEKVEPDIGYVWRALENLSERKDFIGTIVAVER 246
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ ++ N Y+ AVE++ G EI + +RV+ EIGRI+SHL+++ +G T
Sbjct: 247 ICFMDNPNPMICYSQAVEEIAGKEITEFAKYMRVILGEIGRIVSHLISMGNFFGTMGLQT 306
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP--ELVEDIGCWCDSFPSALN 185
+W + RE + E SG+R+ A PGGV + +I + +
Sbjct: 307 FLMWCLDVREYFLDVLEDYSGARIATACIEPGGVRYPLNDYKAWFSEIQKAIEKWEKTKP 366
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
DI D+ N + R N G LED + +G + R SGA D+R +PY Y +L+
Sbjct: 367 DIEDIFLKNPLMTVRAKNTGVFSLEDVEEYFLTGPVARASGAKIDVRIDEPYAAYDKLEI 426
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
D ++GD DR + E+ +S+ +I+Q + ++ + G + +V R
Sbjct: 427 DYVTCENGDARDRLYIIYKEINQSIDLIKQAMKKIKEGIEAGEMDPKKDHLVKMPR---- 482
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISD-GGNKPYRCKIRAPGYAH 364
+P GE + +E +GE ++L++ PYR KI+AP H
Sbjct: 483 -----------------RMPEGEAVSRIEWARGEILMHLVTMPKSTSPYRLKIKAPSVNH 525
Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+E L GH L+D+ + GS+ I G++DR
Sbjct: 526 TMMLEKLLPGHTLSDIPLLYGSMHICQGDLDR 557
>gi|297567776|ref|YP_003686747.1| hypothetical protein Mesil_3430 [Meiothermus silvanus DSM 9946]
gi|296852225|gb|ADH65239.1| hypothetical protein Mesil_3430 [Meiothermus silvanus DSM 9946]
Length = 513
Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats.
Identities = 89/386 (23%), Positives = 140/386 (36%), Gaps = 32/386 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ GP H + GE + ++ +G HRG E+L + K+ QA+ +R
Sbjct: 159 EVPVGPVHAGIIEPGHFRFSVLGERILHLEVRLGYQHRGVEQLFQGKSLEQALLLAER-A 217
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
P+ A+ AVE LG+E+P R +R + E+ R+ HL ++ D+G
Sbjct: 218 GGEPVAHALAFCQAVEAALGVEVPPRAYRLRRVLLELERLFGHLGHLAGLFTDIGYAYAA 277
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ R L ER +G R GGV DI PE ++ +
Sbjct: 278 TQVGKVRALLQGQLERLTGHRYGRNALTVGGVGFDIDPETQVEVRGALAKLAAEAETHLA 337
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + R +GT+ A G G R G DLR+ F +
Sbjct: 338 AALKHPMVLDRLRYVGTLTQAQARWLGLVGPAARACGLGRDLRQDD----ALYQTFTPVV 393
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD R V E+R+ ++R LG G V+
Sbjct: 394 RSGGDVLARAQVYAEELRQGFVY----LDRFLGALPQGEVA------------------- 430
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
+ E Y+ VEA +GE ++ G + R KI P + + +A+E
Sbjct: 431 ---NGPTTPRVDPVPATAEAYSRVEAGRGELFYWVRLRGN-RVERVKIVDPSFKNWRALE 486
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
+G L D I S D+ + D
Sbjct: 487 LAVRGMGLPDFPIINKSFDLSYAGCD 512
>gi|186470859|ref|YP_001862177.1| NADH-ubiquinone oxidoreductase chain 49kDa [Burkholderia phymatum
STM815]
gi|184197168|gb|ACC75131.1| NADH-ubiquinone oxidoreductase chain 49kDa [Burkholderia phymatum
STM815]
Length = 524
Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats.
Identities = 86/386 (22%), Positives = 138/386 (35%), Gaps = 31/386 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H + GE V R++ +G HRG E+L E L R+
Sbjct: 169 EIAVGPIHAGIIEPGHFRFSVVGEKVLRLEERLGYTHRGIERLFERTPLLTGHRLAGRIA 228
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ AY +AVE+ L I +P R Q +R + E R+ +HL ++ D G
Sbjct: 229 GDTTVAFSWAYCMAVERALNIFVPPRAQWLRAVLLERERVANHLGDLGALGNDAGFAFGL 288
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+E + + G R PGG+ +DI + V C+ A+ +
Sbjct: 289 AQFSRMKEDWLRVNDGMFGHRYLMDQIVPGGMARDIAGQFVGAAIEQCERTEDAVRAMQR 348
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + R G + A + G+ R SG D+R PY+ Y E+ +
Sbjct: 349 IYDEQSGLQDRFTGAGKLTANVAAHFSVCGLAARASGLGIDVRVDHPYDPYHEVQPHMMS 408
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD R VR E+ ES+++I ++ L V PV
Sbjct: 409 DSRGDVAARVAVRFNEVYESLRLIGVLLDGLPDGAVVAPVETGR---------------- 452
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
P VE +G+ V + + RC P + + A+E
Sbjct: 453 ---------------PASHGVGWVEGWRGDVFVAIETGENGTISRCHCHDPSWQNWPALE 497
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
G+ + D I S ++ + D
Sbjct: 498 HAIIGNIVPDFPLINKSFNLNYAGHD 523
>gi|297567575|ref|YP_003686546.1| hypothetical protein Mesil_3217 [Meiothermus silvanus DSM 9946]
gi|296852024|gb|ADH65038.1| hypothetical protein Mesil_3217 [Meiothermus silvanus DSM 9946]
Length = 513
Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats.
Identities = 89/386 (23%), Positives = 140/386 (36%), Gaps = 32/386 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ GP H + GE + ++ +G HRG E+L + K+ QA+ +R
Sbjct: 159 EVPVGPVHAGIIEPGHFRFSVLGERILHLEVRLGYQHRGVEQLFQGKSLEQALLLAER-A 217
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
P+ A+ AVE LG+E+P R +R + E+ R+ HL ++ D+G
Sbjct: 218 GGEPVAHALAFCQAVEAALGVEVPPRAYRLRRVLLELERLFGHLGHLAGLFTDIGYAYAA 277
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ R L ER +G R GGV DI PE ++ +
Sbjct: 278 TQVGKVRALLQGQLERLTGHRYGRNALTVGGVGFDIDPETQVEVRGALAKLAAEAETHLA 337
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + R +GT+ A G G R G DLR+ F +
Sbjct: 338 AALKHPMVLDRLRYVGTLTQAQARWLGLVGPAARACGMGRDLRQDD----ALYQTFTPVV 393
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD R V E+R+ ++R LG G V+
Sbjct: 394 RSGGDVLARAQVYAEELRQGFVY----LDRFLGALPQGEVA------------------- 430
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
+ E Y+ VEA +GE ++ G + R KI P + + +A+E
Sbjct: 431 ---NGPTTPRVDPVPATAEAYSRVEAGRGELFYWVRLRGN-RVERVKIVDPSFKNWRALE 486
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
+G L D I S D+ + D
Sbjct: 487 LAVRGMGLPDFPIINKSFDLSYAGCD 512
>gi|68171753|ref|ZP_00545101.1| NADH dehydrogenase [Ehrlichia chaffeensis str. Sapulpa]
gi|67998821|gb|EAM85525.1| NADH dehydrogenase [Ehrlichia chaffeensis str. Sapulpa]
Length = 219
Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats.
Identities = 145/223 (65%), Positives = 180/223 (80%), Gaps = 4/223 (1%)
Query: 174 GCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRK 233
+ +FP ++D+ +LLT NRI+KQRNV+IG V E A WGFSG M+R G WDLRK
Sbjct: 1 MKFIKTFPKFIDDVDELLTENRIWKQRNVDIGIVSKEQALDWGFSGPMLRACGIPWDLRK 60
Query: 234 SQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASD 293
SQPYE Y +L+F+IPIGK GDCYDRYLVRM E+R+S+K++ QC+NRL GP+ D
Sbjct: 61 SQPYEIYEDLEFEIPIGKKGDCYDRYLVRMAEIRQSIKLLEQCLNRLPN----GPIKTDD 116
Query: 294 PKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPY 353
KI PPKR++MK SME+LIHHFKLY+EGY VP+GE Y AVEAPKGEFGVY++SDG NKPY
Sbjct: 117 RKIAPPKRSEMKESMEALIHHFKLYSEGYSVPIGETYMAVEAPKGEFGVYIVSDGTNKPY 176
Query: 354 RCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
RC+IRAPG+AHLQA++ + KGH LAD++AI+GSLDIVFGE+DR
Sbjct: 177 RCRIRAPGFAHLQAIDMMAKGHMLADLTAIIGSLDIVFGEIDR 219
>gi|218659147|ref|ZP_03515077.1| NADH dehydrogenase subunit D [Rhizobium etli IE4771]
Length = 220
Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats.
Identities = 173/220 (78%), Positives = 196/220 (89%)
Query: 177 CDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQP 236
SF I +LLTGNRIFKQRNV+IG V LED W WGFSGVM+RGSGAAWDLR++QP
Sbjct: 1 MRSFLKGAGGIDNLLTGNRIFKQRNVDIGVVSLEDCWAWGFSGVMVRGSGAAWDLRRAQP 60
Query: 237 YECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKI 296
YECYS+L+FDIPIGK+GD YDRYL+RM+EMRESV+I++QCVNRLL K GP S+ D K+
Sbjct: 61 YECYSDLEFDIPIGKNGDNYDRYLIRMIEMRESVRIMKQCVNRLLSDAKTGPFSSIDGKV 120
Query: 297 VPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCK 356
VPPKR +MKRSME+LIHHFKLYTEGYHVP GEVYAAVEAPKGEFGVYL+SDG NKPYRCK
Sbjct: 121 VPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYLVSDGSNKPYRCK 180
Query: 357 IRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
IRAPGYAHLQAM+F+C+GHQLADV+A+LGSLDIVFGEVDR
Sbjct: 181 IRAPGYAHLQAMDFMCRGHQLADVAAVLGSLDIVFGEVDR 220
>gi|269969015|gb|ACZ54737.1| CG1970-PA-like protein [Nasonia longicornis]
gi|269969017|gb|ACZ54738.1| CG1970-PA-like protein [Nasonia longicornis]
gi|269969019|gb|ACZ54739.1| CG1970-PA-like protein [Nasonia longicornis]
gi|269969021|gb|ACZ54740.1| CG1970-PA-like protein [Nasonia longicornis]
gi|269969023|gb|ACZ54741.1| CG1970-PA-like protein [Nasonia longicornis]
gi|269969025|gb|ACZ54742.1| CG1970-PA-like protein [Nasonia longicornis]
gi|269969027|gb|ACZ54743.1| CG1970-PA-like protein [Nasonia longicornis]
gi|269969029|gb|ACZ54744.1| CG1970-PA-like protein [Nasonia longicornis]
gi|269969031|gb|ACZ54745.1| CG1970-PA-like protein [Nasonia longicornis]
gi|269969033|gb|ACZ54746.1| CG1970-PA-like protein [Nasonia longicornis]
gi|269969035|gb|ACZ54747.1| CG1970-PA-like protein [Nasonia longicornis]
gi|269969037|gb|ACZ54748.1| CG1970-PA-like protein [Nasonia longicornis]
gi|269969039|gb|ACZ54749.1| CG1970-PA-like protein [Nasonia longicornis]
gi|269969041|gb|ACZ54750.1| CG1970-PA-like protein [Nasonia longicornis]
gi|269969043|gb|ACZ54751.1| CG1970-PA-like protein [Nasonia longicornis]
gi|269969045|gb|ACZ54752.1| CG1970-PA-like protein [Nasonia longicornis]
gi|269969047|gb|ACZ54753.1| CG1970-PA-like protein [Nasonia longicornis]
Length = 259
Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats.
Identities = 147/261 (56%), Positives = 189/261 (72%), Gaps = 4/261 (1%)
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GAL+P W FEEREK+ F+ERASG+RMHA Y RPGGV D+P L++DI + F
Sbjct: 1 GALSPFFWVFEEREKIYEFHERASGARMHACYVRPGGVAVDLPLGLLDDIHDFVGKFSER 60
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
++++ DLLT NRI+KQR V IG + E+A +G SG+MIR G WDLRKS PY+ Y +
Sbjct: 61 MDEVEDLLTENRIWKQRTVGIGVLSAEEALNYGCSGMMIRACGIKWDLRKSMPYDAYDCV 120
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DFD+P+ +GD YDRYLVRM EMR+S++II QC+N++ G V D KI PP RA+
Sbjct: 121 DFDVPVAWNGDTYDRYLVRMHEMRQSLRIIEQCLNQMPA----GEVRVDDLKISPPPRAE 176
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK SME+LIHHFKL++EGYHVP G Y AVEAPKGEFGVYL+SDG ++PYR ++RAP +
Sbjct: 177 MKLSMEALIHHFKLFSEGYHVPPGATYTAVEAPKGEFGVYLVSDGSSRPYRVRVRAPSFP 236
Query: 364 HLQAMEFLCKGHQLADVSAIL 384
HL ++ L G LADV ++L
Sbjct: 237 HLALLKKLAPGLMLADVVSVL 257
>gi|224373441|ref|YP_002607813.1| NADH-ubiquinone oxidoreductase [Nautilia profundicola AmH]
gi|223589725|gb|ACM93461.1| NADH-ubiquinone oxidoreductase [Nautilia profundicola AmH]
Length = 549
Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats.
Identities = 109/395 (27%), Positives = 189/395 (47%), Gaps = 25/395 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ +N+GP HPA+ G +RL + +GE +E+++P IG + R E L E K F+ +
Sbjct: 177 EGSRTVLNWGPTHPAS-GPIRLKVYTNGENIEKIEPDIGYVWRALEHLAERKDFIGTIVA 235
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
+R+ ++ N Y+ AVE++ G EI + +RV+ E GRI SHL+++ +G
Sbjct: 236 VERICFMDNPNPMICYSQAVEEIAGKEITEFAKYMRVILGETGRIASHLISLGGFFGTMG 295
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP--ELVEDIGCWCDSFPS 182
T +W + RE + E SG+R+ A PGGV + E I F
Sbjct: 296 LHTFMMWCLDIREYFLDVLEDYSGARIATACVEPGGVRYPLNDYKAWFEGINKAIKKFED 355
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
DI+D+ N + R G L+D + +G + R SGA D+R +PY Y +
Sbjct: 356 TKADITDIFMKNPLMNTRAKGNGVFTLDDVAEYYLAGPIARASGAKIDVRIDEPYAAYDK 415
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
L+ + ++GD DR + E+ +++ +I+Q + ++ + G + +V +
Sbjct: 416 LEMEYATCENGDARDRLYIIFKELEQAMDLIKQAMAKIEEGIEAGEMDPKKDHLVKMPK- 474
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG-GNKPYRCKIRAPG 361
+P GE + +E +GE ++L++ PYR KI+AP
Sbjct: 475 --------------------RMPAGEAVSRIEWARGEILMHLVTQEKSTSPYRLKIKAPS 514
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
H ++ L +G L+D+ + GS+ I G++DR
Sbjct: 515 VNHTMMLDKLLRGKTLSDIPLLYGSMHICQGDLDR 549
>gi|307696879|gb|ADN85892.1| NADH-ubiquinone oxidoreductase subunit 7 [Nyctotherus ovalis]
Length = 390
Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats.
Identities = 149/394 (37%), Positives = 212/394 (53%), Gaps = 15/394 (3%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+ +NFGPQHPA+HGVLRLI+ L GE V +DP+IG LHRGTEKL+E + LQA + D
Sbjct: 8 KQMILNFGPQHPASHGVLRLIITLMGEYVYEIDPNIGFLHRGTEKLLELQPLLQASVFMD 67
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIR-GQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
RLDY + + Q HAY + E++L + +L+R L E RIL+HLL++ T A+D+G
Sbjct: 68 RLDYTSVLTQTHAYCMCAERILACSLADNDTRLLRTLLDEFSRILNHLLSLATHALDIGT 127
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGG-VHQDIPPELVEDIGCWCDSFPSAL 184
+ W FE+RE++M +E SG+RMH A + PG + + E +
Sbjct: 128 MATLFWAFEDRERIMELFEYVSGARMHLALYTPGQSLGMIVSREFFIRCAIIIKNMQKTF 187
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLR--KSQPYECYSE 242
++ L NR+++ R VNIG + SG + R +G DLR S Y YS
Sbjct: 188 TELYVALYNNRVWRLRLVNIGIATSALVQQFCLSGPVARSAGVLLDLRLAVSSDYGSYSN 247
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
G HGD Y RYL+R+ E ES +II + +L + + I R
Sbjct: 248 HKVVSFFGTHGDSYCRYLLRLREPFESTRIIYGILPQLSEQTYCITKCCKNNAIF--NRN 305
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ + S H + + VEA KG FG+ + ++ + PYR I +P Y
Sbjct: 306 SLFDCLPSGTHDVTTDSNT---------SFVEAGKGIFGITITTNNNSVPYRVGIHSPAY 356
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQA+ L GHQ+AD++ +LG+LDIVFGEVDR
Sbjct: 357 KHLQALGALLSGHQIADIATLLGTLDIVFGEVDR 390
>gi|298566641|gb|ADI86441.1| NADH-plastoquinone oxidoreductase subunit 7 [Pharus latifolius]
Length = 260
Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats.
Identities = 107/255 (41%), Positives = 144/255 (56%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y R DY+A M E A E L I++P R IRV+ E+ RI SHLL + D+
Sbjct: 66 YVTRWDYLATMFTEAITVNAPEFLENIQVPQRASYIRVIMLELSRIASHLLWLGPFMADL 125
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA TP + F ERE + +E +G RM YFR GGV D+P ++ +CD F
Sbjct: 126 GAQTPFFYIFRERELIYDLFEAVTGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLQG 185
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L+T N IF +R +G + E+A WG SG M+R SG WDLRK YE Y++
Sbjct: 186 VVEYQKLITHNPIFLERVEGVGFISGEEATNWGLSGPMLRASGIQWDLRKVDRYESYNQF 245
Query: 244 DFDIPIGKHGDCYDR 258
D++I K GD R
Sbjct: 246 DWEIQWXKEGDSLAR 260
>gi|299132788|ref|ZP_07025983.1| NADH dehydrogenase (quinone) [Afipia sp. 1NLS2]
gi|298592925|gb|EFI53125.1| NADH dehydrogenase (quinone) [Afipia sp. 1NLS2]
Length = 513
Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats.
Identities = 91/385 (23%), Positives = 151/385 (39%), Gaps = 29/385 (7%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
+ GP H + DGE V R++ +G H+G E L++ +A R
Sbjct: 157 LPVGPVHAGIIEPGHFRISADGETVVRIEERLGYTHKGIESLLQGADLERAARLACRCSG 216
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ + A+A AVE LG PIR +R L +E+ R+ +HL +V D G
Sbjct: 217 DSTVAYGLAFARAVEAALGWMPPIRAAWLRALMAELERLANHLGDVGAICNDGGFAIMLA 276
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
RE+++ G R+ PGGV DI P I + +L
Sbjct: 277 HCSVLREQVLREAVACFGHRLMMDRIVPGGVAADIDPAGAARIAALMADIRRRFQRLVEL 336
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
+ R V G ++ A + G + R SG D R+ Y Y EL+F+IP+
Sbjct: 337 YNTTASLQDRTVGTGILQPALAAQFAAGGFVGRASGRRCDARRWPGYAPYDELEFEIPVL 396
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
+ GD R +R+ E+ +S+++I Q + +L GP+ + + +
Sbjct: 397 EEGDVNARLWIRVREVEQSIRLIEQILAKLPD----GPIRTENSSSLASAAS-------- 444
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
E A VE +G+ ++ D + RC +R P + +E
Sbjct: 445 -----------------EGMAIVEGFRGDILAWVRIDATGRIERCHLRDPSWFQWPLLEA 487
Query: 371 LCKGHQLADVSAILGSLDIVFGEVD 395
+G+ +AD S + + D
Sbjct: 488 AIEGNIVADFPICNKSFNCSYSGHD 512
>gi|289805466|ref|ZP_06536095.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Typhi str. AG3]
Length = 294
Score = 259 bits (662), Expect = 6e-67, Method: Composition-based stats.
Identities = 105/296 (35%), Positives = 164/296 (55%), Gaps = 5/296 (1%)
Query: 102 LYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGV 161
+ SE+ RI SHLL ++T DVGA+TP + F +R+K+ E +G RMH A+FR GGV
Sbjct: 3 MLSELFRINSHLLYISTFIQDVGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGV 62
Query: 162 HQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVM 221
D+P + + + P L+ N I K R+ + ++A WG +G
Sbjct: 63 AHDLPRGWDRLLREFLEWMPKRLDSYEKAALRNTILKGRSQGVAAYGAKEALEWGTTGAG 122
Query: 222 IRGSGAAWDLRKSQPYECYSELDFDIPIGK-HGDCYDRYLVRMMEMRESVKIIRQCVNRL 280
+R +G +D+RK +PY Y DF++P+G DCY R ++++ E+R+S++I++QC++ +
Sbjct: 123 LRATGIDFDVRKWRPYSGYENFDFEVPVGGGVSDCYTRVMLKVEELRQSLRILQQCLDNM 182
Query: 281 LGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEF 340
GP A P PP + + +E+LI HF + G +P E + VEA KG
Sbjct: 183 ----PEGPFKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPAQESFQMVEATKGIN 238
Query: 341 GVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YL SDG YR ++R P +AHLQ + +G ++D+ LGS+D V +VDR
Sbjct: 239 SYYLTSDGSTMSYRTRVRTPSFAHLQQIPSAIRGSLVSDLIVYLGSIDFVMSDVDR 294
>gi|269968979|gb|ACZ54719.1| CG1970-PA-like protein [Nasonia vitripennis]
gi|269968981|gb|ACZ54720.1| CG1970-PA-like protein [Nasonia vitripennis]
gi|269968983|gb|ACZ54721.1| CG1970-PA-like protein [Nasonia vitripennis]
gi|269968985|gb|ACZ54722.1| CG1970-PA-like protein [Nasonia vitripennis]
gi|269968987|gb|ACZ54723.1| CG1970-PA-like protein [Nasonia vitripennis]
gi|269968989|gb|ACZ54724.1| CG1970-PA-like protein [Nasonia vitripennis]
gi|269968991|gb|ACZ54725.1| CG1970-PA-like protein [Nasonia vitripennis]
gi|269968993|gb|ACZ54726.1| CG1970-PA-like protein [Nasonia vitripennis]
gi|269968995|gb|ACZ54727.1| CG1970-PA-like protein [Nasonia vitripennis]
gi|269968997|gb|ACZ54728.1| CG1970-PA-like protein [Nasonia vitripennis]
gi|269968999|gb|ACZ54729.1| CG1970-PA-like protein [Nasonia vitripennis]
gi|269969001|gb|ACZ54730.1| CG1970-PA-like protein [Nasonia vitripennis]
gi|269969003|gb|ACZ54731.1| CG1970-PA-like protein [Nasonia vitripennis]
gi|269969005|gb|ACZ54732.1| CG1970-PA-like protein [Nasonia vitripennis]
gi|269969007|gb|ACZ54733.1| CG1970-PA-like protein [Nasonia vitripennis]
gi|269969009|gb|ACZ54734.1| CG1970-PA-like protein [Nasonia vitripennis]
gi|269969011|gb|ACZ54735.1| CG1970-PA-like protein [Nasonia vitripennis]
gi|269969013|gb|ACZ54736.1| CG1970-PA-like protein [Nasonia vitripennis]
Length = 259
Score = 259 bits (661), Expect = 7e-67, Method: Composition-based stats.
Identities = 148/261 (56%), Positives = 190/261 (72%), Gaps = 4/261 (1%)
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GAL+P W FEEREK+ F+ERASG+RMHA Y RPGGV D+P L++DI + F
Sbjct: 1 GALSPFFWVFEEREKIYEFHERASGARMHACYVRPGGVAVDLPLGLLDDIHDFVAKFSER 60
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
++++ DLLT NRI+KQR V IG + E+A +G SG+MIR G WDLRKS PY+ Y +
Sbjct: 61 MDEVEDLLTENRIWKQRTVGIGVLSAEEALNYGCSGMMIRACGIKWDLRKSMPYDAYDCV 120
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DFD+P+ +GD YDRYLVRM EMR+S++II QC+N++ G V D KI PP RA+
Sbjct: 121 DFDVPVAWNGDTYDRYLVRMHEMRQSLRIIEQCLNQMPA----GEVRVDDFKISPPPRAE 176
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK SME+LIHHFKL++EGYHVP G Y AVEAPKGEFGVYL+SDG ++PYR ++RAPG+
Sbjct: 177 MKLSMEALIHHFKLFSEGYHVPPGATYTAVEAPKGEFGVYLVSDGSSRPYRLRVRAPGFP 236
Query: 364 HLQAMEFLCKGHQLADVSAIL 384
HL ++ L G LADV ++L
Sbjct: 237 HLALLKKLAPGLMLADVVSVL 257
>gi|269969049|gb|ACZ54754.1| CG1970-PA-like protein [Nasonia giraulti]
gi|269969051|gb|ACZ54755.1| CG1970-PA-like protein [Nasonia giraulti]
gi|269969053|gb|ACZ54756.1| CG1970-PA-like protein [Nasonia giraulti]
gi|269969055|gb|ACZ54757.1| CG1970-PA-like protein [Nasonia giraulti]
gi|269969057|gb|ACZ54758.1| CG1970-PA-like protein [Nasonia giraulti]
gi|269969059|gb|ACZ54759.1| CG1970-PA-like protein [Nasonia giraulti]
gi|269969061|gb|ACZ54760.1| CG1970-PA-like protein [Nasonia giraulti]
gi|269969063|gb|ACZ54761.1| CG1970-PA-like protein [Nasonia giraulti]
gi|269969065|gb|ACZ54762.1| CG1970-PA-like protein [Nasonia giraulti]
gi|269969067|gb|ACZ54763.1| CG1970-PA-like protein [Nasonia giraulti]
gi|269969069|gb|ACZ54764.1| CG1970-PA-like protein [Nasonia giraulti]
gi|269969071|gb|ACZ54765.1| CG1970-PA-like protein [Nasonia giraulti]
gi|269969073|gb|ACZ54766.1| CG1970-PA-like protein [Nasonia giraulti]
gi|269969075|gb|ACZ54767.1| CG1970-PA-like protein [Nasonia giraulti]
Length = 259
Score = 258 bits (660), Expect = 1e-66, Method: Composition-based stats.
Identities = 146/261 (55%), Positives = 189/261 (72%), Gaps = 4/261 (1%)
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GAL+P W FEEREK+ F+ER SG+RMHA Y RPGGV D+P L++DI + F
Sbjct: 1 GALSPFFWVFEEREKIYEFHERVSGARMHACYVRPGGVAVDLPLGLLDDIHDFVGKFSER 60
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
++++ DLLT NRI+KQR V IG + E+A +G SG+MIR G WDLRKS PY+ Y +
Sbjct: 61 MDEVEDLLTENRIWKQRTVGIGVLSAEEALNYGCSGMMIRACGIKWDLRKSMPYDAYDCV 120
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DFD+P+ +GD YDRYLVRM EMR+S++II QC+N++ G V D KI PP RA+
Sbjct: 121 DFDVPVAWNGDTYDRYLVRMHEMRQSLRIIEQCLNQMPA----GEVRVDDLKISPPPRAE 176
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK SME+LIHHFKL++EGYHVP G Y +VEAPKGEFGVYL+SDG ++PYR ++RAPG+
Sbjct: 177 MKLSMEALIHHFKLFSEGYHVPPGATYTSVEAPKGEFGVYLVSDGSSRPYRVRVRAPGFP 236
Query: 364 HLQAMEFLCKGHQLADVSAIL 384
HL ++ L G LADV ++L
Sbjct: 237 HLALLKKLAPGLMLADVVSVL 257
>gi|260575430|ref|ZP_05843429.1| putative formate hydrogenlyase subunit 5 precursor [Rhodobacter sp.
SW2]
gi|259022350|gb|EEW25647.1| putative formate hydrogenlyase subunit 5 precursor [Rhodobacter sp.
SW2]
Length = 503
Score = 257 bits (658), Expect = 2e-66, Method: Composition-based stats.
Identities = 89/385 (23%), Positives = 156/385 (40%), Gaps = 31/385 (8%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
+ GP H + GE V R++ +G +H+G L+ + + V R
Sbjct: 149 VAVGPVHAGIIEPGHFRFTVQGETVVRLEERLGYVHKGIGSLMHGASLARGVELAGRTSG 208
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ + A++ A E LG ++P R +R L +E+ R+ +HL +V D
Sbjct: 209 DSTVAYAWAFSQAAEAALGAQVPARALWLRALMAELERLANHLGDVGAVCNDAAFALMLA 268
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
RE+++ + A G RM PGGV +D+ V + A + L
Sbjct: 269 HCSVLREQVLRACDAAFGHRMMRDGILPGGVSRDLDAAGVAGLRALVAGIAKAFPPLVAL 328
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
+ R V+ G + + A +G G + R SG +D R++ PY Y +L+F +P
Sbjct: 329 FDDTTSLQDRVVSTGKLVPDLARRFGAGGHVGRASGRNFDTRRNLPYAPYDQLEFKVPGR 388
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
GD R R+ E+ +S+ ++ Q ++RL GP+ A P + +
Sbjct: 389 SDGDVAARVWQRIDEVFQSLALVTQILDRLPD----GPIYAEPPAVGEQR---------- 434
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
E VE+ +G+ V+L D + RC +R P + +E
Sbjct: 435 -----------------EGLGLVESFRGDVLVWLTLDAQGRVLRCHMRDPSWFQWPLLEA 477
Query: 371 LCKGHQLADVSAILGSLDIVFGEVD 395
+ +G+ +AD S + + D
Sbjct: 478 VIEGNIIADFPLCNKSFNCSYSGHD 502
>gi|117925496|ref|YP_866113.1| NADH dehydrogenase subunit D [Magnetococcus sp. MC-1]
gi|117609252|gb|ABK44707.1| Membrane bound protein complex subunit mbxL [Magnetococcus sp.
MC-1]
Length = 391
Score = 257 bits (658), Expect = 2e-66, Method: Composition-based stats.
Identities = 125/384 (32%), Positives = 193/384 (50%), Gaps = 27/384 (7%)
Query: 14 GPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAP 73
GPQHP G + + L L G+ + H+G LHRG EKL+E +TF+Q P R+ P
Sbjct: 34 GPQHPGITGNMSVELTLCGDEIVDAKTHVGYLHRGFEKLMERRTFIQCFPIVCRVCVPEP 93
Query: 74 MNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGF 133
E+ YA AVE+L GIE P R + IR L E+GRI S+L+ + Q+ G W
Sbjct: 94 DFNEYCYAAAVEELAGIECPERARWIRTLILEMGRINSYLMYLGGQSGAFGMGVIGQWTT 153
Query: 134 EEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTG 193
R+ ++ +E +G+R++ + PGGV +P + + S + D+ D+L
Sbjct: 154 YIRDLMLDRFEELTGARIYHMFILPGGVRDGLPEGFEQRMEETLRELESTMKDVRDVLFH 213
Query: 194 NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHG 253
N +FK+R+V +G + +G +G R +G A D+R QPY Y EL ++ +GK
Sbjct: 214 NAVFKKRSVGVGVIDPAWLEPYGVTGPNARAAGVAKDVRIDQPYLVYPELSYEAIVGKDS 273
Query: 254 DCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIH 313
D Y R VR ++ +SV +IRQ + R+ GPV A P ++
Sbjct: 274 DIYTRADVRYRDLLQSVDLIRQILARMP---HEGPVMAKLPNVL---------------- 314
Query: 314 HFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA-MEFLC 372
+ +P GE Y E +GE+G Y+++DG P R +R P Y H A +E +
Sbjct: 315 -------HWKIPQGETYIRGECSRGEYGYYVVTDGSGYPRRINVRGPSYTHAVALLEHMI 367
Query: 373 KGHQLADVSAILGSLDIVFGEVDR 396
++DV+ ++ SL EV+R
Sbjct: 368 INQNISDVAGLMVSLHTYPPEVER 391
>gi|302039527|ref|YP_003799849.1| putative formate hydrogenlyase large subunit [Candidatus Nitrospira
defluvii]
gi|300607591|emb|CBK43924.1| putative Formate hydrogenlyase, large subunit [Candidatus
Nitrospira defluvii]
Length = 530
Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats.
Identities = 93/388 (23%), Positives = 162/388 (41%), Gaps = 32/388 (8%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
F + GP H + GE + +++ HRG EKL E + +AVP +R+
Sbjct: 173 FEVPVGPIHAGIIEPGHFRFSVAGEPIMQLEVRHFWKHRGVEKLFEQQQLTEAVPLSERV 232
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+ AY AVE L G+E+ R + +R L+ E+ R+ +H+ +V D
Sbjct: 233 SGDTSVGHSLAYCQAVEMLQGVEVSPRARYLRTLFLELERLHNHIGDVGAICNDTAYALA 292
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
+E+LM +R +GSR GGV D+ + + ++ +DI
Sbjct: 293 HAHCGRMKEQLMQLNDRLTGSRFLRGVNCVGGVALDLSGLQLAQVEVELNALEQDFSDIE 352
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
++ N +R N G + AW GV+ R SG DLR+ +P+ Y L +
Sbjct: 353 KIVFANASLTERLENTGILTEGIAWDHAVIGVVGRASGIDRDLRRDRPFAAYDVLQPRVA 412
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL-GKNKVGPVSASDPKIVPPKRADMKRS 307
+ ++GD R VR+ E+ ES+++IR+ L G+ P+
Sbjct: 413 LYRYGDVRARMRVRLDEIHESIRLIREVRRGLPLGRLVSRPMHQPQ-------------- 458
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
P +AVE +GE +++ + +RCK+R P + + A
Sbjct: 459 -----------------PGAWALSAVEGWRGEILYVVMAGDAGRIHRCKVRDPSFVNWPA 501
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVD 395
+++ G+ + D I S ++ + D
Sbjct: 502 IQWAALGNIVPDFPLINKSFNLSYAGND 529
>gi|296109016|ref|YP_003615965.1| hypothetical protein Metin_0331 [Methanocaldococcus infernus ME]
gi|295433830|gb|ADG13001.1| hypothetical protein Metin_0331 [Methanocaldococcus infernus ME]
Length = 377
Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats.
Identities = 93/387 (24%), Positives = 147/387 (37%), Gaps = 29/387 (7%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP HPA RL L ++ EI+ + IG +RG E ++E + +++
Sbjct: 3 EIAIGPVHPAMLEPHRLRLFIEDEIIRDAELTIGSNYRGIELIMEGLPPEKITNLAEKVC 62
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ EK I++PI+G+ IR + E R+ SHLL +G T
Sbjct: 63 GICSHIHVWTCVRVAEKGCSIDVPIKGEYIRAIVEEFERLHSHLLLFAHMYEVLGFETMA 122
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
F RE ++ E +G R+ + GGV + + D + + +
Sbjct: 123 YRAFMIREHVLKALEYITGGRVQYSCPVIGGVRPRCNIKKTFWLEEKLDFLEEGIKKLLN 182
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + R +G + E A + +G R SG + DLRK Y+ +F+ +
Sbjct: 183 RTIKDPMILARTKEVGYLDKETAIKYHATGPTARASGLSCDLRKRDYMPIYNNFEFEEIV 242
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD R LVR E ES+KI+RQ + + + P
Sbjct: 243 LDDGDILARLLVRFYECFESIKILRQALEDIKEMEDRVYNPNYTLREFKPL--------- 293
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
I+H EAP+G D + + IR P +L ME
Sbjct: 294 -DIYH-------------------EAPRGVVLYGYGLDENWRVRQVLIRTPSLTNLATME 333
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVDR 396
+ GH ++D I+ S D F DR
Sbjct: 334 AILPGHHVSDAEPIIVSCDPCFTCTDR 360
>gi|226327882|ref|ZP_03803400.1| hypothetical protein PROPEN_01763 [Proteus penneri ATCC 35198]
gi|225203586|gb|EEG85940.1| hypothetical protein PROPEN_01763 [Proteus penneri ATCC 35198]
Length = 387
Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats.
Identities = 108/278 (38%), Positives = 168/278 (60%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +N GP HP++HG R+IL+LDGE + P +G HRG EK+ E +++ +
Sbjct: 99 TENEDFMFLNLGPNHPSSHGAFRIILQLDGEEIVDCVPDVGYHHRGAEKMGERQSWHSYI 158
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DR++Y+ E Y LAVEKL GIE+P R ++IRV+ SE+ RI SHLL ++T D
Sbjct: 159 PYTDRIEYLGGCVNEMPYVLAVEKLAGIEVPERVKVIRVMLSELFRINSHLLYISTFIQD 218
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA+TP + F +R+K+ E +G RMH A+FR GGV D+P + + D P
Sbjct: 219 VGAMTPVFFAFTDRQKVYNIVEAITGFRMHPAWFRIGGVAHDLPRGWERLLREFLDWMPK 278
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ N I K R + + + ++A WG +G +R +G +D+RK +PY Y
Sbjct: 279 RLDSYVKAALQNSILKGRTIGVASYNAKEALEWGVTGAGLRATGVEFDVRKWRPYSGYEN 338
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRL 280
+F+IP+ +GDCYDR ++++ E+R+S++I+ QC ++
Sbjct: 339 FEFEIPVASNGDCYDRVMLKVEELRQSLRILEQCYKKI 376
>gi|152992440|ref|YP_001358161.1| NADH-quinone oxidoreductase, chain D [Sulfurovum sp. NBC37-1]
gi|151424301|dbj|BAF71804.1| NADH-quinone oxidoreductase, chain D [Sulfurovum sp. NBC37-1]
Length = 547
Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats.
Identities = 111/395 (28%), Positives = 190/395 (48%), Gaps = 23/395 (5%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+S +N+GP HPA+ G +RL + DGE + +DP IG + R E L+ K F+ A+
Sbjct: 175 DTESSETVLNWGPTHPAS-GPIRLRIHCDGEEIISIDPDIGYVWRALEHLVTKKDFVGAI 233
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
+RL ++ +N Y +AVE++ G EI + +RVL E+ R+ SH + + +
Sbjct: 234 VAVERLCFMDNINSMTGYCMAVEEIAGTEITEFAKWMRVLLGEVARVSSHFMGLGGFFNN 293
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+G T LW + RE + F E SG+R+ A PGGV + +++++ D F +
Sbjct: 294 LGLHTLGLWNMDVREYFLDFLESYSGARIATAAIEPGGVRYGLDMAMLDELQKALDKFDA 353
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ D + N K R +G + E+ +G G++ R SG D+R +PY Y +
Sbjct: 354 TVEDTYMIFVNNPTMKMRAKEVGILTDEEVEAYGLCGIVARASGVRTDIRIDEPYAAYDQ 413
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
++ + + G DR+ V E+++S+ II+Q R+ G + + +V +
Sbjct: 414 VEMEYVTKEGGAAVDRFTVIFEELKQSIDIIKQAKKRIEEGVASGEFNPTKDHMVKVPK- 472
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGE-FGVYLISDGGNKPYRCKIRAPG 361
+P GE + VE +GE ++ + PYR K++AP
Sbjct: 473 --------------------KLPKGEALSRVEWARGEVLMHFVTEEKAKSPYRLKMKAPS 512
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ H + L G L+DV + GSL + G++DR
Sbjct: 513 FNHTMMLNHLLAGETLSDVPLVFGSLYVCQGDLDR 547
>gi|260462449|ref|ZP_05810656.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Mesorhizobium
opportunistum WSM2075]
gi|259031645|gb|EEW32914.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Mesorhizobium
opportunistum WSM2075]
Length = 505
Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats.
Identities = 89/385 (23%), Positives = 149/385 (38%), Gaps = 31/385 (8%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
I GP H GE V R++ +G H+G E L+ A R
Sbjct: 151 IPVGPVHAGIIEPGHFRFTASGETVVRLEERLGYAHKGIEGLMAGSDIDHAAKLAGRTSG 210
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ + A+A AVE LG+E+P R +R L +E+ R+ +HL ++ D
Sbjct: 211 DSTVAYSLAFARAVEAALGVEVPPRAIWLRALMAELERLANHLGDIGAICNDAAFALMHA 270
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
RE+++ + A G R+ PGGV ++ + + + DL
Sbjct: 271 HCGVLRERVLRASDAAFGHRLMRDRIVPGGVATNLSDDGTTAVWSLIAEIRQRFPALVDL 330
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
+ R V G +K+E A + G + R SG +D R+S Y Y L+FD+P+
Sbjct: 331 YDNTASLQDRTVATGRLKVELARQYRAGGYVGRASGRDFDARRSLAYPPYDTLNFDVPLL 390
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
+ GD R +R+ E+ +S+ ++ Q + +L GP+ + P
Sbjct: 391 QEGDVNARVWIRIREVEQSLSLVEQILRQLPD----GPIRVDVSRTGGPH---------- 436
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
E A VE +G+ +L RC +R P + +E
Sbjct: 437 -----------------EGMALVEGFRGDILAWLRIGKTGLIERCHLRDPSWFQWPLLEA 479
Query: 371 LCKGHQLADVSAILGSLDIVFGEVD 395
+G+ +AD S + + D
Sbjct: 480 AIEGNIVADFPLCNKSFNCSYSGHD 504
>gi|148643123|ref|YP_001273636.1| energy-converting hydrogenase B, subunit N, EhbN
[Methanobrevibacter smithii ATCC 35061]
gi|222445360|ref|ZP_03607875.1| hypothetical protein METSMIALI_00988 [Methanobrevibacter smithii
DSM 2375]
gi|261350079|ref|ZP_05975496.1| formate hydrogenlyase, subunit 5 [Methanobrevibacter smithii DSM
2374]
gi|148552140|gb|ABQ87268.1| energy-converting hydrogenase B, subunit N, EhbN
[Methanobrevibacter smithii ATCC 35061]
gi|222434925|gb|EEE42090.1| hypothetical protein METSMIALI_00988 [Methanobrevibacter smithii
DSM 2375]
gi|288860865|gb|EFC93163.1| formate hydrogenlyase, subunit 5 [Methanobrevibacter smithii DSM
2374]
Length = 375
Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats.
Identities = 105/402 (26%), Positives = 158/402 (39%), Gaps = 40/402 (9%)
Query: 1 MDKK----KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETK 56
MD+K K I G HPAA R+ L ++ EIV+ + IG+ HRG E+++E
Sbjct: 1 MDEKIPNSKIIETEIPMGTVHPAALEPYRVRLFVEDEIVQEAEITIGVNHRGVERIMEGL 60
Query: 57 TFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNV 116
+A +++ + E L IEIP R IR++ E+ R+ SH L +
Sbjct: 61 PVEKANALTEKICGICSNAHVWNSVRTAELGLDIEIPERASYIRIIVGELERLHSHFLYL 120
Query: 117 TTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDI--PPELVEDIG 174
+ T + F RE +M G+R+ GGV + +E +
Sbjct: 121 AHGCEVLAHETFSMRVFYLREIVMELLNMIGGNRVQYGCSVIGGVRPRCELDSKRLERLA 180
Query: 175 CWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKS 234
D+ L D + T + I R IG + + A SG +R +G +DLR +
Sbjct: 181 NDMDALEEGLTDFVNRFTSDSILMSRITGIGVLPQKQAIKLDVSGPSLRATGVVYDLRTT 240
Query: 235 QPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDP 294
Y DF+I + GD ++R +E ES+KIIRQ V L GPV D
Sbjct: 241 M--SEYDPFDFNIITQEDGDVKSNLMMRALESFESIKIIRQAVKNL----PEGPVVTHDW 294
Query: 295 KIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYR 354
K D+ S +E P+G +
Sbjct: 295 ---EMKDTDIIES------------------------RIEVPRGTLYHSYAL-ESGRVRH 326
Query: 355 CKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
IR P A++ AM++ C G Q+ D + D F DR
Sbjct: 327 SIIRTPSMANIGAMQYACIGDQITDAQLCIVQCDPCFTCTDR 368
>gi|58042486|gb|AAW63683.1| NADH dehydrogenase subunit 7 [Liriodendron tulipifera]
Length = 287
Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats.
Identities = 163/291 (56%), Positives = 208/291 (71%), Gaps = 4/291 (1%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
AHGV R +LE++GE+VER +PHIG LHRGTEKLIE K+FLQA+PY DR DYV+ M QEHA
Sbjct: 1 AHGVSRSVLEMNGEVVERAEPHIGSLHRGTEKLIEYKSFLQALPYSDRSDYVSTMAQEHA 60
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKL 139
++ AVE+LL E+P+R Q IRVL+ EI RI +H L TT AMDVGA TP LW EEREKL
Sbjct: 61 HSSAVERLLNCEVPLRAQYIRVLFREITRISNHSLASTTHAMDVGASTPFLWASEEREKL 120
Query: 140 MVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQ 199
+ F+ER G+RMHA++ RPGGV QD+P DI F S +++ ++ TGNRI+KQ
Sbjct: 121 LEFHERVPGARMHASFIRPGGVAQDLPLGSCRDIDSSTQQFASRIDESEEMSTGNRIWKQ 180
Query: 200 RNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRY 259
R V+IGTV + A WGFSGVM+RG G WD R++ PY+ + + D D+P+G GD YDRY
Sbjct: 181 RLVDIGTVTAQQAKDWGFSGVMLRGRGVCWDSRRAAPYDVHDQSDPDVPVGTRGDRYDRY 240
Query: 260 LVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
+R+ EMR+SV+II QC N++ G + A D K+ PP R MK SMES
Sbjct: 241 CIRIEEMRQSVRIIVQCPNQM----PSGMIKADDRKLCPPSRCRMKLSMES 287
>gi|15679249|ref|NP_276366.1| formate hydrogenlyase, subunit 5 [Methanothermobacter
thermautotrophicus str. Delta H]
gi|2622350|gb|AAB85727.1| formate hydrogenlyase, subunit 5 [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 381
Score = 256 bits (655), Expect = 4e-66, Method: Composition-based stats.
Identities = 98/396 (24%), Positives = 159/396 (40%), Gaps = 36/396 (9%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K++ I GP H AA R+ L ++ EIV + +G+ HRG E+++E +A
Sbjct: 7 KEEIIETEIAMGPVHSAAIEPYRVRLFVEDEIVRDAEITVGVNHRGIERIMEGLPVEKAN 66
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
+++ + L EK LG+EIP R IR++ E+ R+ SHLL +
Sbjct: 67 SLTEKVCGICSGVHLWNSVLVAEKGLGVEIPERASYIRIIIGELERLHSHLLYLAHGNEV 126
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG--GVHQDIPPELVEDIGCWCDSF 180
+G T + F RE +M G+R+ G D+ V+ I D
Sbjct: 127 LGHETFSMRLFYIRETVMELLRLIGGNRVQYGVPIIGGIRPRADLDEMKVQRIREGIDLI 186
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ ++ T + + R + + +DA +G +R +G D+R+ P CY
Sbjct: 187 EEKVEAFAERFTSDPMIMSRITGVCPISRKDALRLHVTGPTLRATGVDLDIRREMP--CY 244
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+F++ GD L+R++E+ ESVKIIRQ + L G
Sbjct: 245 DPFEFEVITQDEGDVRANLLMRVLEIFESVKIIRQALRDLPGGKV--------------- 289
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ RS E + VEAP+G + IR P
Sbjct: 290 ---VDRSWEMQDTGIIK-------------SYVEAPRGRLYHSYAI-EDGRVRGSVIRTP 332
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+++ AM++ C GH + D + D F DR
Sbjct: 333 SMSNIGAMQYACIGHHITDAQLGIVQCDPCFTCTDR 368
>gi|289549192|ref|YP_003474180.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Thermocrinis albus
DSM 14484]
gi|289182809|gb|ADC90053.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Thermocrinis albus
DSM 14484]
Length = 500
Score = 256 bits (654), Expect = 5e-66, Method: Composition-based stats.
Identities = 87/383 (22%), Positives = 148/383 (38%), Gaps = 31/383 (8%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
GP H L GE + +++ HRG EK+ E K + + R+
Sbjct: 148 VGPIHAGIIEPGHFRFSLQGEAILQLEIRHFWKHRGVEKVAEGKDIEETLRLVQRISGDN 207
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWG 132
+N AY AVEKL+G++ R + +RV+ +E+ R+ +H+ ++ MD+GA
Sbjct: 208 AVNIGIAYLEAVEKLVGVDPHSRVKYLRVIVAELERVWNHVRDLGWLFMDIGATFVAYNL 267
Query: 133 FEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLT 192
F +EKL+ F + + R R G V I + E+I + +I +
Sbjct: 268 FSLQEKLLRFNKALTRHRFMFDILRVGDVKVSIDSTIAEEIKRILKEVKKEVEEIDTFVD 327
Query: 193 GNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKH 252
K R G + + A GV R SG D R PY Y ++ +I +
Sbjct: 328 KTPSVKDRWETTGRIFRKTALELALCGVCARASGVPRDTRLELPYLAYRDVGVNICTHED 387
Query: 253 GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLI 312
GD R VR+ E+ ES++++ ++ L
Sbjct: 388 GDVMARAKVRIDEVHESIRLVETLLDNLPAYQGSNTTFQ--------------------- 426
Query: 313 HHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLC 372
K Y E P+G +++ D K YR K P + + A+++
Sbjct: 427 --IKPYEWS--------VGMAETPRGNAFFFVMLDEEGKIYRMKYVDPSFRNWPAIQYAV 476
Query: 373 KGHQLADVSAILGSLDIVFGEVD 395
G +AD + S+++ + D
Sbjct: 477 LGDIIADFPLVNKSMNLSYAGND 499
>gi|154319506|ref|XP_001559070.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor [Botryotinia fuckeliana B05.10]
gi|150855892|gb|EDN31084.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor [Botryotinia fuckeliana B05.10]
Length = 313
Score = 256 bits (654), Expect = 5e-66, Method: Composition-based stats.
Identities = 145/232 (62%), Positives = 180/232 (77%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
++K+K R +T+NFGPQHPAAHGVLRLILEL+GE + R DPH+GLLHRGTEKLIE KT++Q
Sbjct: 82 VEKRKIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRSDPHVGLLHRGTEKLIEYKTYIQ 141
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+ M E ++LAVEKLL +EIP R + IR L+ EI RIL+HL++V + A
Sbjct: 142 ALPYFDRLDYVSMMTNEQCFSLAVEKLLNVEIPERAKWIRTLFGEITRILNHLMSVLSHA 201
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTP LWGFEEREKLM FYER SG+R+HAAY RPGGVHQDIP L++DI W F
Sbjct: 202 MDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPVGLLDDIYQWATQF 261
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLR 232
+++ +LLT NRI+ R +G V DA F+GVM+RGSG +D+R
Sbjct: 262 GDRIDETEELLTDNRIWIGRTKGVGVVSAADALNLSFTGVMLRGSGVPFDVR 313
>gi|288561257|ref|YP_003424743.1| energy-converting hydrogenase B subunit N EhbN [Methanobrevibacter
ruminantium M1]
gi|288543967|gb|ADC47851.1| energy-converting hydrogenase B subunit N EhbN [Methanobrevibacter
ruminantium M1]
Length = 391
Score = 256 bits (653), Expect = 6e-66, Method: Composition-based stats.
Identities = 91/403 (22%), Positives = 155/403 (38%), Gaps = 41/403 (10%)
Query: 1 MDKKKSR-----SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIET 55
M++KK++ I G HPAA R+ ++ EI++ + IG+ HRG E+++E
Sbjct: 1 MEEKKAKKQEIIETEIQMGTVHPAALEPYRVRFFVEDEIIKDAEITIGVNHRGIERVMEG 60
Query: 56 KTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLN 115
+A +++ + + EK LG+E+P R IRV+ E+ R+ SHLL
Sbjct: 61 LPVEKANMLTEKICGICSNSHTWNSVRTAEKGLGVEVPDRAVYIRVIVGELERLHSHLLY 120
Query: 116 VTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDI--PPELVEDI 173
+ + T + F RE +M G+R+ GGV ++ I
Sbjct: 121 LGHGCETLAHETFSMRVFYIRETIMDLLAMIGGNRVQYGCSIIGGVRPRCELDDNRIQRI 180
Query: 174 GCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRK 233
D + D ++ + + R G + E A SG +R +G DLR
Sbjct: 181 LDGMDLVEKNVLDFANRFVKDSVVASRISGTGYIPQEQALKLAVSGPTLRATGVKRDLRT 240
Query: 234 SQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASD 293
Y D+DI D + L+R+ E+ E++KI+RQ + L
Sbjct: 241 DMY--EYDNFDYDIITQDTCDVQAQLLMRVFEIFEAIKIVRQAIRDLPEG---------- 288
Query: 294 PKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPY 353
KI + + + +E P+G +
Sbjct: 289 -KITDRSWEMIDTDLIE--------------------SYIEVPRGTLYHSYAI-EDGRVR 326
Query: 354 RCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
C IR P +++ AM++ C + + D + D F DR
Sbjct: 327 HCIIRTPSMSNIGAMQYACIDNHITDGQLCIVQCDPCFTCSDR 369
>gi|182679429|ref|YP_001833575.1| NADH dehydrogenase (quinone) [Beijerinckia indica subsp. indica
ATCC 9039]
gi|182635312|gb|ACB96086.1| NADH dehydrogenase (quinone) [Beijerinckia indica subsp. indica
ATCC 9039]
Length = 492
Score = 256 bits (653), Expect = 6e-66, Method: Composition-based stats.
Identities = 99/385 (25%), Positives = 153/385 (39%), Gaps = 30/385 (7%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
I GP H GE V R++ +G H+G E L+ + QA R
Sbjct: 137 IPVGPVHAGIIEPGHFRFNAAGETVVRLEERLGYTHKGIESLMAGASLDQAARLAGRTSG 196
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ + +A+ALAVE LGIEI R +R L +E+ R+ +HL ++ D
Sbjct: 197 DSTVAYAYAFALAVEAALGIEISARAIYLRALMAELERLANHLGDIGAICNDAAFALMLA 256
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
RE+++ +A G R+ PGGV D+ P V DI + + +L
Sbjct: 257 HCGVLRERVLRVAAKAFGHRLMMDCIIPGGVSVDLAPAGVSDIRHLLATIRGVFPALVEL 316
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
+ R V G V A +G G + R SG A+D R+ Y Y L FD+P+
Sbjct: 317 YDETASLQDRTVGTGIVPPSLARQFGAGGYIGRASGRAFDTRRHLAYPPYDTLTFDVPVL 376
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
GD R +R+ E+ +S+ +I Q ++RL R ++ + E
Sbjct: 377 NEGDVNARVWIRIREVEQSLSLIDQILDRLPADG--------------LLRTEVGGAGER 422
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
E A VE +G+ V + G RC +R P + +E
Sbjct: 423 R----------------EGLALVEGFRGDVLVSVRLSGEGSIERCHLRDPSWFQWPLLEA 466
Query: 371 LCKGHQLADVSAILGSLDIVFGEVD 395
KG+ +AD S + + D
Sbjct: 467 AIKGNIVADFPLCNKSFNCSYSGHD 491
>gi|188996638|ref|YP_001930889.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit
[Sulfurihydrogenibium sp. YO3AOP1]
gi|188931705|gb|ACD66335.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit
[Sulfurihydrogenibium sp. YO3AOP1]
Length = 524
Score = 256 bits (653), Expect = 6e-66, Method: Composition-based stats.
Identities = 90/388 (23%), Positives = 153/388 (39%), Gaps = 33/388 (8%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
F I GP H L GE + +++ HRG EKL E KT + + ++
Sbjct: 168 FNILVGPIHAGIIEPGHFRFSLAGEHILQLEIRHFWKHRGVEKLAEGKTAEEVLEIVPKV 227
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
AY A+EKL EIP R + IRVL++E+ R++ +L +V DV
Sbjct: 228 SGDHSYAHTLAYVQAIEKLSNTEIPKRAKYIRVLFAELERLMCNLNDVAWLFQDVAYSFG 287
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
F +E++M + +G+R + + GGV D+ E + I
Sbjct: 288 AQGMFILKEEVMRLNKALTGNRFNKNVLKIGGVSVDLNQEKINLIIDKLGYITDKFEFYK 347
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
++ + R G + E G R S D+RK PY Y +L F
Sbjct: 348 KIIFDSASILDRFETTGRILYETVKELSCIGYTARASDLKSDIRKEHPYLIYDKLTFTSQ 407
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
+ GDC+ R R+ ++ +S+ II++ ++ L
Sbjct: 408 TFEEGDCFARLKCRLSDIEDSISIIKEVLSDLPDG------------------------- 442
Query: 309 ESLIHHFKLYTEGYHVPVGEVY-AAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
+++T+ +P E +G ++ +D K R KIR P + + QA
Sbjct: 443 -------EIFTQSNPLPANRWTLGYSEGQRGNIMYFVKTDKEGKIDRLKIRDPSFNNWQA 495
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVD 395
+++ G +AD + SL++ + D
Sbjct: 496 IQWAVLGDIVADFPLVNKSLNLSYAGTD 523
>gi|57233682|ref|YP_182268.1| hydrogenase, group 4, HycE subunit, putative [Dehalococcoides
ethenogenes 195]
gi|57224130|gb|AAW39187.1| hydrogenase, group 4, HycE subunit, putative [Dehalococcoides
ethenogenes 195]
Length = 526
Score = 255 bits (652), Expect = 7e-66, Method: Composition-based stats.
Identities = 96/387 (24%), Positives = 153/387 (39%), Gaps = 34/387 (8%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
+ + GP H GE V ++ + HRG EKL + + + +
Sbjct: 173 YEVGVGPVHAGIIEPGHFRFSAIGEPVLNLEIRLFYKHRGLEKLAVGRDIDFGLKIAESV 232
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+AY+ AVE + + P R + +R++ E+ R+ SHL +++ DV
Sbjct: 233 SGDESAANTYAYSSAVEHICSVRPPRRAEQLRLILLEMERLYSHLSDLSGMLTDVAYPVG 292
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
RE+LM + +R SGSR PGG+ +DIP +V ++ + F N
Sbjct: 293 AAALMALREELMRWNKRLSGSRFLKGIITPGGLLRDIPAGIVNELADYLRVFEGRFNQQV 352
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
+ R G + +GV R SGA D R +QPY YSEL F+ P
Sbjct: 353 EKALAKTSVVDRFETTGIINNRLLVPLNITGVAARASGADIDTRLNQPYGLYSELAFEPP 412
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
+ GD R+ VR+ E++ S+ +I Q +RL + P+
Sbjct: 413 VLPEGDVMARFKVRVSEVQTSLGLILQTASRLSAGEYIVPL------------------- 453
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
G VE+P+G+ +L K R K+R Y + QA+
Sbjct: 454 --------------KPQNGYSLVLVESPRGQSLHWLWLR-DGKIERYKVRTASYCNWQAI 498
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVD 395
E G + D I SL++ + D
Sbjct: 499 EHAVLGDIIPDFPLINKSLNLSYAGTD 525
>gi|307353349|ref|YP_003894400.1| NADH-ubiquinone oxidoreductase subunit 49kDa [Methanoplanus
petrolearius DSM 11571]
gi|307156582|gb|ADN35962.1| NADH-ubiquinone oxidoreductase chain 49kDa [Methanoplanus
petrolearius DSM 11571]
Length = 361
Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats.
Identities = 97/395 (24%), Positives = 162/395 (41%), Gaps = 37/395 (9%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
KK ++ GP HP R+ E GE V + +G + +G EK++ + + + +
Sbjct: 2 KKIVDVSLPIGPVHPVFKEPARIKCETMGERVLSAEVELGYVKKGIEKIMCGRPWQEVMF 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+R+ + + + VE++ IE R +RV+ +E+ R+ SH+L + +
Sbjct: 62 LAERICGICSVIHNMVFIETVERVSAIEPSPRAAYLRVIANELDRMQSHILANYSYCYTI 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
T ++ RE +M E +G+R+ AY PGGV D PE V + S
Sbjct: 122 EHETLAMYLLNIRETVMDQIELLTGARVTCAYIIPGGVRFDFRPEEVAKLRAALLKIESD 181
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + R+ R+ ++G + E+A G R SG D R + P Y L
Sbjct: 182 VKRFQGMFANGRMISLRSKSVGILTPEEARIAHAVGPTARASGLRIDERLNHPT--YKLL 239
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DF+ + D Y R ++R E+ +S+ IIR+C++ L G
Sbjct: 240 DFEPIVRDECDNYARVMIRFQEVMQSIAIIRRCLDELPGG-------------------- 279
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
LI + G V G EAP+GE L +D + I P
Sbjct: 280 -------LIRNGGEVGAGSFVWKG------EAPRGELTYDLKTDEFGRIIEIAIMTPSIM 326
Query: 364 HLQAMEF-LCKG-HQLADVSAILGSLDIVFGEVDR 396
+++A + KG AD++A S D +R
Sbjct: 327 NIEACGHYMLKGIDSAADITATFISSDPCIACNER 361
>gi|46201313|ref|ZP_00055272.2| COG3261: Ni,Fe-hydrogenase III large subunit [Magnetospirillum
magnetotacticum MS-1]
Length = 505
Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats.
Identities = 91/385 (23%), Positives = 146/385 (37%), Gaps = 33/385 (8%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
I GP H GE V R++ +G H+G E L++ +A R+
Sbjct: 153 IPVGPVHAGVIEPGHFRFHCQGEAVVRLEERLGYQHKGIEGLLQGAPLDKAQRIAARVSG 212
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ + A+A AVE G E+P R +R L +E+ R+ +H+ ++ D
Sbjct: 213 DSTVAYSLAFARAVEAATGCEVPPRAHWVRGLMAEMERVANHVFDIGAVCNDAAFAVMLS 272
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
REK++ + G R++ PGGV +D+ E E + F L L
Sbjct: 273 HMGVLREKILRANDALFGHRLNMDRIVPGGVDRDLSEEGAEALKHLLYGFGKMLAKGYKL 332
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
R V+ G V+ +G G + R SG D R++ Y Y +LD +P+
Sbjct: 333 YENTPSLSDRTVSTGIVQTSLIHRFGAGGFVGRASGRGQDTRETPSYPPYDKLDMTVPVL 392
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
GD R LVR E +ES+ +I + ++ + PV
Sbjct: 393 TEGDVNARVLVRFAEAKESLHLINRILHEMPEGAFRVPVPEV------------------ 434
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
GE VE+ +GE V+L G+ RC P + +E
Sbjct: 435 ---------------AGEGLGVVESFRGEVVVWLRISAGHVVERCHTHDPSWFQWPLLEA 479
Query: 371 LCKGHQLADVSAILGSLDIVFGEVD 395
+G+ +AD S + + D
Sbjct: 480 AIEGNIVADFPLCNKSFNCSYSGHD 504
>gi|90422452|ref|YP_530822.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Rhodopseudomonas
palustris BisB18]
gi|90104466|gb|ABD86503.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Rhodopseudomonas
palustris BisB18]
Length = 502
Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats.
Identities = 92/385 (23%), Positives = 152/385 (39%), Gaps = 32/385 (8%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
+ GP H GE V R++ +G +H+G E L+ + Q R+
Sbjct: 149 VAVGPVHAGIIEPGHFRFTASGETVVRLEQRLGYVHKGIEGLMGGASLQQGAKLAGRVSG 208
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ + AY+ A E L +++P R +R L +E+ R+ +HL ++ D
Sbjct: 209 DSTVAYSFAYSRAAEAALELKVPERAVWLRALMAELERLANHLGDIGAICNDAAFALMLA 268
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
RE ++ A G R+ PGGV D+ + ++ I S + +L
Sbjct: 269 HCGVLRENVLRAAAIAFGHRLMRDLIVPGGVRGDLSVDGLKAIEAALVSIRHQFPALIEL 328
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
+ R V G V E +G G + RGSG A+D R+ Y Y +L FD+P+
Sbjct: 329 YDDTASLQDRTVGTGVVSSELVEQYGAGGFVGRGSGRAFDTRRKLCYPPYGQLRFDVPVL 388
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
GD R VR+ E+ +S+ +I Q +++L G G + S P I +
Sbjct: 389 PEGDVNARIWVRIREVEQSMAMIDQILDKLPG----GELLTSVPAIAEDR---------- 434
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
E VE +G+ V+L RC +R P + +E
Sbjct: 435 -----------------EGLGLVEGFRGDVLVWLRLR-DGVITRCHLRDPSWFQWPLLEA 476
Query: 371 LCKGHQLADVSAILGSLDIVFGEVD 395
+G+ +AD S + + D
Sbjct: 477 AIEGNIVADFPLCNKSFNCSYSGPD 501
>gi|307353198|ref|YP_003894249.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Methanoplanus
petrolearius DSM 11571]
gi|307156431|gb|ADN35811.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Methanoplanus
petrolearius DSM 11571]
Length = 517
Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats.
Identities = 80/387 (20%), Positives = 142/387 (36%), Gaps = 32/387 (8%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
+ + GP H + GE + ++ + LHRG EKL E K + + + +
Sbjct: 162 YEVAVGPVHAGIIEPGHFRFSVIGEAIFNLETRLYYLHRGIEKLAEGKKPAECLKIAESI 221
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+ + LA EK+ GI +R + +R + E+ RI S L + DV
Sbjct: 222 SGDESVANAVCFCLAAEKIAGIRPSLRAETLRGIALEMERICSLLSDCAGMLTDVAYPVG 281
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
+E+ M + G R Y GGV D+ + + + D ++ +
Sbjct: 282 ASRFMALKEECMRMNRKLFGHRFIRDYITIGGVSGDVGSTDLLLLESFADRIGESVKEAY 341
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
D + R G ++ +G R SG+ D+R PY Y+ +P
Sbjct: 342 DSAINSSSVIDRLATTGIIRQSLIRPLNLTGPAARSSGSRRDVRTDYPYGIYNHHTPVVP 401
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
GD R++ + E++ S + + + G+ G + S P I
Sbjct: 402 SHDAGDVLSRFMQKAEEIQASARF----IKGITGEMPAGEIKTSGPDIYD---------- 447
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
G +A VE +G+ YL K +R K+R + + ++
Sbjct: 448 -----------------DGCAFAMVEGARGQNLHYLEIR-DGKIWRYKVRTASFTNWLSI 489
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVD 395
E G+ + D I SL++ + D
Sbjct: 490 EHAVIGNIVPDFPVINKSLNLSYAGND 516
>gi|301167469|emb|CBW27052.1| putative NADH dehydrogenase I chain C/D [Bacteriovorax marinus SJ]
Length = 536
Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats.
Identities = 113/387 (29%), Positives = 184/387 (47%), Gaps = 24/387 (6%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
TI+ GP HP G +++ E++G+ + R + +G LHRG EK E + + Q ++L+
Sbjct: 174 TISIGPIHPEFKGSMKMNFEVEGDFILRSNFEVGYLHRGIEKTCEQRIYAQIPSLIEKLN 233
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + + AVE+L I+IP + + IR++ E R+ H + + G
Sbjct: 234 FFSSAANSVGWCKAVEELSQIDIPDKAKAIRMVLCEFARVSDHAQCLASMVKSTGIFEGV 293
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ K+ + +GS + GG++ ++P + D S S N++S
Sbjct: 294 QICRKISNKVANLFSALNGSTKGSYLNSIGGLNFELPVGWINDCLDELKSILSLSNELSM 353
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
L +K+R + +A G SG +R G +D+RK PY Y ++DFDIP+
Sbjct: 354 HLNRADFWKERLQ-TAPLNAYEAIDLGVSGPNLRSCGVNYDIRKVSPYYFYEDVDFDIPL 412
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
G +GD YDR+LVR+ E+R+S++II Q ++ L
Sbjct: 413 GINGDSYDRFLVRVEEIRQSLRIISQVLDSLPAGQVRVDKEYLQCN-------------- 458
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
T + V +Y+ +EA GE G Y+ SDG N PYR KI+AP ++ QA
Sbjct: 459 ---------TLNFKVQEKSIYSMIEAVNGELGFYIESDGSNCPYRVKIKAPSFSSAQAFS 509
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVDR 396
+ G +L D L S++IV GE+DR
Sbjct: 510 RMLPGTRLEDCMVSLSSMNIVLGELDR 536
>gi|296161107|ref|ZP_06843917.1| putative formate hydrogenlyase subunit [Burkholderia sp. Ch1-1]
gi|295888630|gb|EFG68438.1| putative formate hydrogenlyase subunit [Burkholderia sp. Ch1-1]
Length = 515
Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats.
Identities = 87/386 (22%), Positives = 138/386 (35%), Gaps = 31/386 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H + GE V R++ +G HRG EKL E L R+
Sbjct: 160 EIAVGPIHAGVIEPGHFRFSVVGEKVLRLEERLGYAHRGIEKLFERTPLLMGHRLAGRIA 219
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ AY +AVE+ L IP R Q +R L E RI +HL ++ D G
Sbjct: 220 GDTTVAFSWAYCMAVERALDGRIPPRAQWLRALMLERERIANHLGDLGALGNDAGFAYGL 279
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+E + + A G R PGGV DI + + C+ + + +
Sbjct: 280 AQFSRLKEDWLRVNDEAFGHRYLMDRIVPGGVSTDIDVRFITAMQTQCERIDTEVRVMQR 339
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + R G + + A + G++ R SG D+R PY Y E+ +
Sbjct: 340 IYEDQSGLQDRFAGSGILSADVAEHFSVCGLVGRASGRKSDVRVDHPYAPYHEVPVQMVS 399
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD R VR E+ ES+++I + L D+ ++E
Sbjct: 400 DGRGDVAARVAVRFGEIYESIQLILTLLAGLPEG-------------------DVIAALE 440
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
+E +G+ V L + RC P + + A+E
Sbjct: 441 QRES------------PARGVGWIEGWRGDVFVALQTGADGTLSRCHCHDPSWQNWPALE 488
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
G+ + D I S ++ + D
Sbjct: 489 HAIIGNIVPDFPLINKSFNLNYAGHD 514
>gi|91779763|ref|YP_554971.1| putative formate hydrogenlyase subunit [Burkholderia xenovorans
LB400]
gi|91692423|gb|ABE35621.1| putative formate hydrogenlyase subunit [Burkholderia xenovorans
LB400]
Length = 515
Score = 252 bits (645), Expect = 5e-65, Method: Composition-based stats.
Identities = 88/386 (22%), Positives = 138/386 (35%), Gaps = 31/386 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H + GE V R++ G HRG EKL E L R+
Sbjct: 160 EIAVGPIHAGVIEPGHFRFSVVGEKVLRLEERFGYAHRGIEKLFERTPLLLGYRLAGRIA 219
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ AY +AVE+ L IP R Q +R L E RI +HL ++ D G
Sbjct: 220 GDTTVAFSWAYCMAVERALDGRIPPRAQWLRALLLERERIANHLGDLGALGNDAGFAYGL 279
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+E + ++A G R PGGV +DI + I C+ + + +
Sbjct: 280 AQFSRLKEDWLRVNDQAFGHRYLMDRIVPGGVSKDIDSRFITAIQTQCERIDTEVRVMQR 339
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + R G + E A + G++ R S D+R PY Y E+ +
Sbjct: 340 IYEDQSGLQDRFAGSGILSAEVAEHFSVCGLVARASSRKTDVRVDHPYAPYHEVPVQMVS 399
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD R VR E+ ES+++I+ + L + V +
Sbjct: 400 DARGDVAARVAVRFGEIYESIRLIQTLLAGLPEGDIVTVLEQRGS--------------- 444
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
+E +G+ V L + G RC P + + A+E
Sbjct: 445 ----------------PARGVGWIEGWRGDVFVALETGAGGTLSRCHCHDPSWQNWPALE 488
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
G+ + D I S ++ + D
Sbjct: 489 HAIIGNIVPDFPLINKSFNLNYAGHD 514
>gi|207108299|ref|ZP_03242461.1| NADH dehydrogenase subunit D [Helicobacter pylori HPKX_438_CA4C1]
Length = 278
Score = 252 bits (645), Expect = 5e-65, Method: Composition-based stats.
Identities = 116/261 (44%), Positives = 164/261 (62%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ +NFGPQHP++HG LRLILEL+GE + + P IG LHRG EKL E T+ + +
Sbjct: 18 EHDDNQMILNFGPQHPSSHGQLRLILELEGEKIIKATPEIGYLHRGCEKLGENMTYNEYM 77
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DRLDY + + +AYA AVE LL +EIP R Q+IR + E+ R++SH+ ++ A+D
Sbjct: 78 PTTDRLDYTSSTSNNYAYAYAVETLLNLEIPRRAQVIRTILLELNRMISHIFFISVHALD 137
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
VGA++ L+ F+ RE + E G+R+ R GGV D+PP +E + +
Sbjct: 138 VGAMSVFLYAFKTREYGLDLMEDYCGARLTHNAIRIGGVPLDLPPNWLEGLKKFLGEMRE 197
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
I LL NRI++ R N+G V + A WG SG+M+RG+G A+D+RK +PYE Y E
Sbjct: 198 CKKLIQGLLDKNRIWRMRLENVGVVTPKMAQSWGMSGIMLRGTGIAYDIRKEEPYELYKE 257
Query: 243 LDFDIPIGKHGDCYDRYLVRM 263
LDFD+P+G +GD YDRY + M
Sbjct: 258 LDFDVPVGNYGDSYDRYCLYM 278
>gi|58042466|gb|AAW63673.1| NADH dehydrogenase subunit 7 [Amborella trichopoda]
Length = 285
Score = 252 bits (645), Expect = 5e-65, Method: Composition-based stats.
Identities = 162/289 (56%), Positives = 206/289 (71%), Gaps = 4/289 (1%)
Query: 22 GVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYA 81
GV R +LE++GE+VER +PHIG LHRGTEKLIE KT+LQA+PYFDR DYV+ M QEHA++
Sbjct: 1 GVSRSVLEMNGEVVERAEPHIGSLHRGTEKLIEYKTYLQALPYFDRSDYVSTMAQEHAHS 60
Query: 82 LAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMV 141
AVE+LL E+P+R Q IRV + EI RI +H L TT AMDVGA TP LW EEREKL+
Sbjct: 61 SAVERLLNCEVPLRAQYIRVSFREITRISNHSLASTTHAMDVGASTPSLWASEEREKLLE 120
Query: 142 FYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRN 201
FYER G+RMHA++ RPGGV QD+P DI F S +++ ++ TGNRI+KQR
Sbjct: 121 FYERVPGARMHASFIRPGGVAQDLPLGSCRDIDSSTQQFASRIDESEEMSTGNRIWKQRL 180
Query: 202 VNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLV 261
V+IGTV + A WGFSGVM+RG G WD R++ PY+ + + D D+P+G GD YDRY +
Sbjct: 181 VDIGTVTAQQAKDWGFSGVMLRGRGVCWDSRRAAPYDVHDQSDPDVPVGTRGDRYDRYCI 240
Query: 262 RMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
R+ EMR+SV+II QC N++ G + A D K+ PP R MK SMES
Sbjct: 241 RIEEMRQSVRIIVQCPNQM----PSGMIKADDRKLCPPSRCRMKLSMES 285
>gi|154244128|ref|YP_001415086.1| NADH-ubiquinone oxidoreductase chain 49kDa [Xanthobacter
autotrophicus Py2]
gi|154158213|gb|ABS65429.1| NADH-ubiquinone oxidoreductase chain 49kDa [Xanthobacter
autotrophicus Py2]
Length = 501
Score = 252 bits (645), Expect = 5e-65, Method: Composition-based stats.
Identities = 89/385 (23%), Positives = 150/385 (38%), Gaps = 33/385 (8%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
I GP H GE V R++ +G +H+G E+L+ QA R
Sbjct: 149 IPVGPVHAGIIEPGHFRFSCYGETVVRLEARLGYVHKGIERLMAGADVAQAARLAGRQSG 208
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ + A++ AVE G+ +P R +R + +E+ R+ +HL ++ D
Sbjct: 209 DSTVAYALAFSRAVEAARGVGVPARAHALRGVMAELERLANHLGDIGAICNDAAFALMLA 268
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
REK++ RA G R+ PGGV D+ + V I +A + +L
Sbjct: 269 HCGVLREKVLRVCARAFGHRLMMDGVIPGGVAGDLARDGVSAIRVLVSEVRAAFPALVEL 328
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
+ R V G + + +G G + R SG +D R++ Y Y L F++ +
Sbjct: 329 YDNTASLQDRTVGTGFTRPDYVRQFGAGGFVGRASGRPFDARRALAYPPYDRLPFEVVVR 388
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
GD R VR+ E+ +S+ + + RLL GPV+ P
Sbjct: 389 SEGDVNARIWVRIREVEQSLGL----IVRLLDTLPDGPVAVEVPAG-------------- 430
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
GE A VE +G+ ++ + + R +R P + +E
Sbjct: 431 ---------------PGEGLAVVEGFRGDVLAFVALEADGRVRRAHLRDPSWFQWPLLET 475
Query: 371 LCKGHQLADVSAILGSLDIVFGEVD 395
+G+ +AD S + + VD
Sbjct: 476 AIEGNIVADFPLCNKSFNCSYSGVD 500
>gi|91786822|ref|YP_547774.1| NADH-ubiquinone oxidoreductase subunit 49kDa [Polaromonas sp.
JS666]
gi|91696047|gb|ABE42876.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Polaromonas sp. JS666]
Length = 516
Score = 252 bits (645), Expect = 6e-65, Method: Composition-based stats.
Identities = 87/386 (22%), Positives = 139/386 (36%), Gaps = 31/386 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H + GE V R++ H+G H+G E+ T ++ R+
Sbjct: 161 EIAVGPVHAGIIEPGHFRFSVVGEKVLRLEEHLGYTHKGIERRFTELTPIEGHRLAGRVS 220
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + AY +A+E G IP R +R L E R+ +HL ++ D
Sbjct: 221 GDSTVAYAWAYCMALESAWGSRIPARATWLRALMLERERVANHLGDLGALGNDAALAFGL 280
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
RE + A G R PGGV D+ P +++ + CD + +
Sbjct: 281 AQFSRLREDWQRLSKEAFGHRFMMDAVVPGGVAVDLAPPMLDRLRKQCDDIERDVRALKV 340
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + + R + G V + A G +G+ R SG DLR + Y + +
Sbjct: 341 VYDEHAGLQDRLLTTGRVTPQLAAQLGLTGLAGRASGQTADLRCDHEWAPYDRFEVAMAT 400
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
++GD R VR E ES+++IR L G + PP M
Sbjct: 401 HRNGDVAARVTVRFEETFESLRLIRAICAGLPGDATHVDLR-------PPAVPTM----- 448
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
VE +GE V L G + RC P + + +E
Sbjct: 449 -------------------GAGWVEGWRGEVFVALEIGGDGRVVRCHCHDPSWQNWPVLE 489
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
G+ + D I S ++ + D
Sbjct: 490 HAIIGNIVPDFPLINKSFNLSYSGHD 515
>gi|302879582|ref|YP_003848146.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Gallionella
capsiferriformans ES-2]
gi|302582371|gb|ADL56382.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Gallionella
capsiferriformans ES-2]
Length = 514
Score = 252 bits (644), Expect = 7e-65, Method: Composition-based stats.
Identities = 86/386 (22%), Positives = 141/386 (36%), Gaps = 30/386 (7%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H + GE V R++ +G H+G EK E+++ Q R+
Sbjct: 158 EIPVGPVHAGIIEPGHFRFSVVGEKVLRLEERLGYTHKGIEKRFESRSLSQGAKLAGRVS 217
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + AYA+A E + P R +R L+ E RI +HL ++ DV
Sbjct: 218 GDSTVAYAWAYAMAAECIADKTPPDRALWLRALFLERERIANHLGDLGYLGNDVAFSFGF 277
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ +E+++ G R PGGV D+ + + C + +
Sbjct: 278 AQFWILKEQVLRHNAALFGHRYLMDVVVPGGVSADLDEAGKKVLIDECTMLEHEVRLLRR 337
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
L + + R + G V + A G G+ R S AWD+R Y LD +
Sbjct: 338 LYEEHAGVQDRFIGTGRVAPKLAAQLGVCGLAGRASSQAWDMRAQFACAPYDMLDVQMAT 397
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
++GD R VR E+ ES+++ R+ + LLG + S P
Sbjct: 398 HQNGDVAARVNVRFDELLESLRLQREIMANLLGAGDLAYPLTSLPA-------------- 443
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
G VE +GE V + +D R P + + +E
Sbjct: 444 ----------------NGFGIGMVEGWRGEVMVAIHTDAAGNLDRVHPHDPSWQNWPVLE 487
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
G+ + D I S ++ + D
Sbjct: 488 HAIIGNIVPDFPLINKSFNLSYSGCD 513
>gi|325958031|ref|YP_004289497.1| NADH dehydrogenase (quinone) [Methanobacterium sp. AL-21]
gi|325329463|gb|ADZ08525.1| NADH dehydrogenase (quinone) [Methanobacterium sp. AL-21]
Length = 377
Score = 252 bits (644), Expect = 8e-65, Method: Composition-based stats.
Identities = 87/398 (21%), Positives = 152/398 (38%), Gaps = 36/398 (9%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ +K + GP H AA R+ L ++ E+V+ + +G+ HRG E+++E +
Sbjct: 7 ITEKNVIETEVTMGPVHSAAIEPYRVRLFVEDEMVKDAEITVGVNHRGIERIMEGLPVEK 66
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A +++ + + L EK +GI++P R Q IRV+ E+ R+ SHLL +
Sbjct: 67 ANSLTEKICGICSNSHIWNSVLVAEKAIGIDVPERAQYIRVIMEELERLHSHLLYLAHGN 126
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDI--PPELVEDIGCWCD 178
+G T + F RE +M G+R+ GGV ++ I D
Sbjct: 127 EVLGHETFAMRIFYIRETVMELLRMIGGNRVQYGASIIGGVRPRCELDAMRIQKISEGMD 186
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
+ D +D + + R +G + + A SG +R +G D+R E
Sbjct: 187 IIEEKILDFADRFVSDPMIMSRITGVGVLTRKQAIELAASGPTLRSTGVETDVRTEM--E 244
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
Y DF++ GD L+R++E+ E++ IIRQ + L +
Sbjct: 245 AYEPFDFNVITQDDGDVKSNLLMRVLEIPEAINIIRQAIKHLPDGKITNRSWDMQDAPIT 304
Query: 299 PKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
+E P+G+ + +R
Sbjct: 305 KSY-------------------------------IEVPRGKLYHSYAL-EDGRVRNSIVR 332
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
P ++ AM++ GH + D + D F DR
Sbjct: 333 TPSITNIGAMQYAAVGHHITDAQLAIVQCDPCFTCTDR 370
>gi|289433304|ref|YP_003463177.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Dehalococcoides sp.
GT]
gi|288947024|gb|ADC74721.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Dehalococcoides sp.
GT]
Length = 526
Score = 252 bits (643), Expect = 9e-65, Method: Composition-based stats.
Identities = 94/387 (24%), Positives = 152/387 (39%), Gaps = 34/387 (8%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
+ + GP H GE + ++ + HRG EKL K + + +
Sbjct: 173 YEVGVGPVHAGIIEPGHFRFSAIGEPILNLEVRLFYTHRGLEKLAMGKDIDFGLKIAEGI 232
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+AY+ AVE + P R + +R++ E+ R+ SHL +++ DVG
Sbjct: 233 SGDESAANTYAYSSAVEHICSSRPPRRAEQLRLILLEMERLYSHLADLSGMLTDVGYPVG 292
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
RE+LM + +R +GSR PGG+ +DIP EL+ ++ + +F ++
Sbjct: 293 AASLSALREELMRWNKRLTGSRFLKGIIAPGGLLKDIPGELITELADYLYAFEDRFSEQV 352
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
+ R G V +GV R SG A D R +QPY Y EL F +P
Sbjct: 353 EKALAKTSVVDRFETTGIVNNRLLIPLNITGVTARASGEAIDTRLNQPYGFYPELSFKLP 412
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
+ GD R+ VR+ E++ S+ +I + +L
Sbjct: 413 VLPEGDVMARFRVRLSEVQTSLGLILKTAAKLSAGE------------------------ 448
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
Y G VE+P+G+ +L K R K+R Y + QA+
Sbjct: 449 ---------YAIPLKPVNGYSLVLVESPRGQSLHWLWLR-DGKIERYKVRTASYCNWQAI 498
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVD 395
E G + D I SL++ + D
Sbjct: 499 EHAVLGDIIPDFPLINKSLNLSYAGTD 525
>gi|83309306|ref|YP_419570.1| Ni,Fe-hydrogenase III large subunit [Magnetospirillum magneticum
AMB-1]
gi|82944147|dbj|BAE49011.1| Ni,Fe-hydrogenase III large subunit [Magnetospirillum magneticum
AMB-1]
Length = 505
Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats.
Identities = 92/385 (23%), Positives = 148/385 (38%), Gaps = 33/385 (8%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
I GP H GE V R++ +G H+G E L++ +A R+
Sbjct: 153 IPVGPVHAGVIEPGHFRFHCQGEAVVRLEQRLGYQHKGIEGLLQGAPLDKAARIVARVSG 212
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ + A+A AVE G E+P R +R + +E+ R+ +H+ ++ D
Sbjct: 213 DSTVAYSLAFARAVEAATGCEVPARAHWLRGVMAEMERVANHVFDIGAVCNDAAFAVMLS 272
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
REK++ + G R++ PGGV D+ E VE + F L L
Sbjct: 273 HMGVLREKVLRANDVLFGHRLNMDRIVPGGVSLDLSDEGVEALKHLLYGFGKLLEQGYQL 332
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
R V+ G V+ +G G + R SG D R++ Y Y +LD +P+
Sbjct: 333 YENTPSLSDRTVSTGIVQTSLIHRFGAGGFVGRASGRGHDARETPSYPPYDKLDMTVPVL 392
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
GD R LVR E +ES+ + +NR+L + G V P++
Sbjct: 393 TEGDVNARVLVRFAEAKESLHL----INRMLHEMPEGAVRVPLPEV-------------- 434
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
GE E+ +GE V+L + RC P + +E
Sbjct: 435 ---------------AGEGMGVAESFRGEVVVWLRLGADHVVERCHPHDPSWFQWPLLEA 479
Query: 371 LCKGHQLADVSAILGSLDIVFGEVD 395
+G+ +AD S + + D
Sbjct: 480 AIEGNIVADFPLCNKSFNCSYSGHD 504
>gi|53804773|ref|YP_113608.1| hydrogenase subunit [Methylococcus capsulatus str. Bath]
gi|53758534|gb|AAU92825.1| hydrogenase subunit [Methylococcus capsulatus str. Bath]
Length = 527
Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats.
Identities = 88/387 (22%), Positives = 136/387 (35%), Gaps = 33/387 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H GE V ++ +G +H+G EKL + R+
Sbjct: 172 EIPVGPVHAGIIEPGHFRFLALGETVLNLEERLGYVHKGIEKLAVGRDPEGLARLAGRVS 231
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ A A+E G+ P R +R ++ E R+ +HL ++ D
Sbjct: 232 GDTTVGHAWAACQAMEHAAGVAPPERALWLRAIFIERERVANHLNDIGAICNDTAFAFGH 291
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
RE + R G R+ PGGV D+P E + + S L ++
Sbjct: 292 SQFSRLRELWLRDNLRWFGHRLLMDRIVPGGVAVDLPAEATSAMPAAMAALRSELEELKP 351
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+L + IF+ R V G + G G + R G D+R+ P+ Y L
Sbjct: 352 ILDESTIFQDRVVGAGVLSERIVRELGCLGYVARACGIGRDVRERAPHAPYDRLGVKAVT 411
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD R VR E+ S+ I+ QC+ R+ + GP+ A
Sbjct: 412 RGDGDVAARLYVRYEELLASLDILDQCLRRI----EPGPLRADWR--------------- 452
Query: 310 SLIHHFKLYTEGYHVPV-GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
P E VE +GE Y+ DG R R P + A+
Sbjct: 453 -------------TPPANAEGLGLVEGWRGEIATYVRFDGAGSIVRFFPRDPSVFNWPAL 499
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVD 395
E L G+ + D S++ + D
Sbjct: 500 EKLILGNIVPDFPLCNKSVNGSYSGHD 526
>gi|73749344|ref|YP_308583.1| hydrogenase, group 4, HycE subunit [Dehalococcoides sp. CBDB1]
gi|73661060|emb|CAI83667.1| hydrogenase, group 4, HycE subunit [Dehalococcoides sp. CBDB1]
Length = 526
Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats.
Identities = 94/387 (24%), Positives = 152/387 (39%), Gaps = 34/387 (8%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
+ + GP H GE + ++ + HRG EKL K + + +
Sbjct: 173 YEVGVGPVHAGIIEPGHFRFSAIGEPILNLEVRLFYTHRGLEKLAMGKDIDFGLKIAEGI 232
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+AY+ AVE + P R + +R++ E+ R+ SHL +++ DVG
Sbjct: 233 SGDESAANTYAYSSAVEHICSSRPPRRAEQLRLILLEMERLYSHLADLSGMLTDVGYPVG 292
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
RE+LM + +R +GSR PGG+ +DIP EL+ ++ + +F ++
Sbjct: 293 AASLSALREELMRWNKRLTGSRFLKGIIAPGGLLKDIPGELITELADYLYAFEGRFSEQV 352
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
+ R G V +GV R SG A D R +QPY Y EL F +P
Sbjct: 353 EKALAKTSVVDRFETTGIVNNRLLIPLNITGVTARASGEAIDTRLNQPYGFYPELSFKLP 412
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
+ GD R+ VR+ E++ S+ +I + +L
Sbjct: 413 VLPEGDVMARFRVRLSEVQTSLGLILKTAAKLSAGE------------------------ 448
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
Y G VE+P+G+ +L K R K+R Y + QA+
Sbjct: 449 ---------YAIPLKPVNGYSLVLVESPRGQSLHWLWLR-DGKIERYKVRTASYCNWQAI 498
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVD 395
E G + D I SL++ + D
Sbjct: 499 EHAVLGDIIPDFPLINKSLNLSYAGTD 525
>gi|288818461|ref|YP_003432809.1| NADH dehydrogenase/hydrogenase large subunit [Hydrogenobacter
thermophilus TK-6]
gi|288787861|dbj|BAI69608.1| NADH dehydrogenase/hydrogenase large subunit [Hydrogenobacter
thermophilus TK-6]
gi|308752051|gb|ADO45534.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Hydrogenobacter
thermophilus TK-6]
Length = 494
Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats.
Identities = 92/383 (24%), Positives = 150/383 (39%), Gaps = 32/383 (8%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
GP H L GE + +++ HRG EK+ E K +A+ R+
Sbjct: 143 VGPIHAGIIEPGHFRFSLAGEAILQLEIRHFWKHRGVEKVCEGKNPEEALRIVSRISGDN 202
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWG 132
+N AY AVE LLGI++ R +R + +E+ RI +H+ ++ MD+G P
Sbjct: 203 AVNISLAYLNAVETLLGIKLSQRVSYLRCVLAELERIWNHVRDLGWLFMDIGFPLPAQHL 262
Query: 133 FEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLT 192
F +E+LM + +G R F GGV+ I E I ++
Sbjct: 263 FSIQEQLMRLNKVITGHRFMFDAFSIGGVNVKIEDEEKRLIDKMLTLVEKETKEVERFAI 322
Query: 193 GNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKH 252
+ R G + + A GV R SG D R PY Y + D ++PI +
Sbjct: 323 ETPSVRDRFETTGRIFRKTAMELSLCGVCARASGLKRDTRVELPYLAYKDFDVNVPISEQ 382
Query: 253 GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLI 312
GD R+++R+ E+ +SV +IR + L N E
Sbjct: 383 GDVMARFMIRVEEIYQSVNLIRGFLENLPNDN-----------------------AEKQN 419
Query: 313 HHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLC 372
F Y+ E P+G +++ D YR K P + + A+++
Sbjct: 420 LLFP-YSWS--------VGNAETPRGNAFFFVMLDEKGNIYRLKYTDPSFRNWPAIQYAV 470
Query: 373 KGHQLADVSAILGSLDIVFGEVD 395
G +AD + S+++ + D
Sbjct: 471 LGDIIADFPLVNKSMNLSYSGND 493
>gi|304315371|ref|YP_003850518.1| energy-converting hydrogenase B, subunit N [Methanothermobacter
marburgensis str. Marburg]
gi|302588830|gb|ADL59205.1| energy-converting hydrogenase B, subunit N [Methanothermobacter
marburgensis str. Marburg]
Length = 376
Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats.
Identities = 94/396 (23%), Positives = 152/396 (38%), Gaps = 36/396 (9%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K++ I G H AA R+ L ++ EIV + +G+ HRG E+++E +A
Sbjct: 4 KREIIETEITMGTVHSAAIEPYRVRLFVEDEIVRDAEITVGVNHRGIERIMEGLPVEKAN 63
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
+++ + L EK LG+EIP R IR++ E+ RI SHLL +
Sbjct: 64 SLTEKVCGICSGVHLWNSVLVAEKGLGVEIPERASYIRIIVGELERIHSHLLYLAHGNEV 123
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG--GVHQDIPPELVEDIGCWCDSF 180
+G T + F RE +M G+R+ G D+ + I D
Sbjct: 124 LGHETFSMRLFYIRETVMELLRLIGGNRVQYGVPIIGGIRPRADLDEMKTQRISEGMDFI 183
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ ++ T + + R + + +DA +G +R +G +DLR P CY
Sbjct: 184 EEKVEAFAERFTSDPMVMSRITGVCPISRKDALRLHVTGPTLRATGVEFDLRTEMP--CY 241
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+FD+ GD L+R++E+ ES+ IIRQ + L V +
Sbjct: 242 DPFEFDVITQDGGDVRANLLMRVLEIFESINIIRQALRDLPDGRVVDRNWEMQDTGIVKS 301
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
VEAP+G + IR P
Sbjct: 302 Y-------------------------------VEAPRGRLYHSYAI-EDGRVRGSIIRTP 329
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+++ AM++ C GH + D + D F DR
Sbjct: 330 SMSNIGAMQYACIGHHITDAQLGIVQCDPCFTCTDR 365
>gi|189218529|ref|YP_001939170.1| formate hydrogenlyase subunit 5 [Methylacidiphilum infernorum V4]
gi|189185387|gb|ACD82572.1| Formate hydrogenlyase subunit 5 [Methylacidiphilum infernorum V4]
Length = 535
Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats.
Identities = 86/385 (22%), Positives = 152/385 (39%), Gaps = 32/385 (8%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
+ GP H + GEIV R++ +G H+G E L + + + R+
Sbjct: 182 VPVGPVHAGIIEPGHFRFTMSGEIVVRMEERLGYTHKGIESLFSGASIDKGMEIAGRISG 241
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ + + YALAVE+ LGI P R + IR L +E+ R+ +H +V D
Sbjct: 242 DSTVAYAYGYALAVEEALGISPPPRAEWIRALMAELERMANHFGDVGAICNDAAFPRILS 301
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
REK++ + G R+ GGV +D+ E + I ++ + + D
Sbjct: 302 RCALLREKILRCAQSCFGHRLMRDKIVVGGVKEDLNAEGLSRIRELLETIKEEVVCLKDF 361
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
+ R V G + A +G G + R SG +D RK+ Y+ Y L F++P+
Sbjct: 362 YDSKNSLQDRTVGTGVLDRRLAELFGAGGFIGRASGRNFDSRKAFAYKPYDSLSFEVPVL 421
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
+ GD R +R++E+ +SVK++ Q + + + +
Sbjct: 422 EDGDVNARVWIRILEIEQSVKLLEQILEGMPPGSICAERIGGEG---------------- 465
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
G+ + VE+ +G+ ++ K RC R P + +E
Sbjct: 466 ---------------SGKGLSVVESFRGDILTWIEIY-NGKIIRCHPRDPSWFQWPLLEK 509
Query: 371 LCKGHQLADVSAILGSLDIVFGEVD 395
+ G +AD S + + D
Sbjct: 510 VIVGGVIADFPLCNKSFNCSYSGHD 534
>gi|88603079|ref|YP_503257.1| NADH dehydrogenase (ubiquinone), 30 kDa subunit [Methanospirillum
hungatei JF-1]
gi|88188541|gb|ABD41538.1| NADH dehydrogenase (ubiquinone), 30 kDa subunit [Methanospirillum
hungatei JF-1]
Length = 519
Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats.
Identities = 84/392 (21%), Positives = 142/392 (36%), Gaps = 34/392 (8%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ + + + GP H + GE + ++ +G LHRG EK E + + V
Sbjct: 161 EGTGVYQVPVGPVHAGIIEPGHFRFSVIGEDILNLEIRLGYLHRGIEKRAEGCSPEKGVR 220
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+ + + YA+AVE++L +++P R +R + E+ R S L ++ DV
Sbjct: 221 IAESVSGDESVANACCYAMAVEQILSVQVPPRAVWLRAYFLELERSWSLLSDLAGMVTDV 280
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
T RE + ER +GSR GG+ DIP +L+ ++
Sbjct: 281 AFSTAASRLLILRETVQRVCERLTGSRFLKGIIGIGGISHDIPDDLLVEVTDTLMKVRVD 340
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L I + R G V+ SG + R SG A D+R PY Y
Sbjct: 341 LEGILSWVLSVPSVIDRFSTTGVVREPLIDPLALSGPVARASGRALDVRSDHPYGLYETH 400
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
GD R+ ++ E+ S+ I + V ++
Sbjct: 401 PIPPLTRMTGDVLGRFALKGDEVLASLAYITELVRQIPKGP------------------- 441
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
Y V G+ AAVE+P+G Y+ R + +
Sbjct: 442 --------------VQAEYEVCDGDALAAVESPRGRNLCYVRIC-DGSIDRFALSTASFC 486
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ A+E G+ + D I S+++ + D
Sbjct: 487 NWMALEHAVLGNIVPDFPVINKSMNLSYAGTD 518
>gi|308271020|emb|CBX27630.1| hypothetical protein N47_H24520 [uncultured Desulfobacterium sp.]
Length = 513
Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats.
Identities = 85/389 (21%), Positives = 141/389 (36%), Gaps = 31/389 (7%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
S + GP H GE V ++ +G HRG E+ + + + Y +
Sbjct: 155 ESHEVAVGPVHAGVIEPGHFRFLCHGETVYHLEISLGYQHRGIERALNGGPGPRTIHYME 214
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
L + AY AVE L G+ R + IR L +E+ RI +H+ ++ A DVG L
Sbjct: 215 TLAGDTTIGHATAYCRAVEALSGMITSPRAEAIRALAAELERIANHIGDLGALAGDVGFL 274
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
+ R ++ G+R RP GV D+ EL+ + ++ +
Sbjct: 275 PTMSYCGRIRGDVLNLTALLCGNRFGRGLIRPSGVAWDLDGELITKLLNGLNAVDKDATE 334
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+L+ R GT+ E A G GV R G D+R+ PY Y
Sbjct: 335 AVELMFDTPSVLARFEGTGTISPETAIEIGLVGVAARACGLDCDVRREFPYGMYRFAQVY 394
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
GDC+ R VR +E++ S++ IRQ + L ++ P + M
Sbjct: 395 PCTWSTGDCFARAYVRWLEIKASLEFIRQQLFELPDGFIAHDIT--------PMKERMLT 446
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+ VE +GE +D K+ P + +
Sbjct: 447 -----------------------VSMVEGWRGEICHVAATDDKGHFLFYKVVDPSFYNWF 483
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ + Q++D S ++ + D
Sbjct: 484 GLALALRNQQISDFPLCNKSFNLSYCGHD 512
>gi|84490225|ref|YP_448457.1| EhbN [Methanosphaera stadtmanae DSM 3091]
gi|84373544|gb|ABC57814.1| EhbN [Methanosphaera stadtmanae DSM 3091]
Length = 383
Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats.
Identities = 94/396 (23%), Positives = 154/396 (38%), Gaps = 36/396 (9%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+++ IN G HPAA R+ L ++ EIV+ + +GL HRG E+++E +A
Sbjct: 15 ERQVFETEINMGTVHPAALEPYRVRLFVEDEIVKDAEITVGLNHRGIERIMEGLPVEKAN 74
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
+++ + + E LGIEIP R +RVL E+ R+ SH+L + +
Sbjct: 75 ALTEKVCGICSNGHIYNSCRVGEGALGIEIPERAVYLRVLAEELERLHSHMLYLGHGSEV 134
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFR--PGGVHQDIPPELVEDIGCWCDSF 180
+ T + F RE +M G+R+ D+ + + + D
Sbjct: 135 LCHETFAMRIFYIRESVMDLLYMMGGNRVQYGISVLGGVRPRADLNLKEQQRVLDTMDYI 194
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ D ++ + + R G + + A +G +R +G +D R Y
Sbjct: 195 DEKVADFAERFIADPMVMHRITGTGELSQKQALDLHVTGPSLRATGYEYDFRTEM--FEY 252
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+FDI GD L+R E+ ES KIIRQ + L GP+ D +V
Sbjct: 253 EPFEFDIITQDGGDVRANILMRATEIFESTKIIRQVIKNL----PKGPIVTRDWDLVD-- 306
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ Y + +E P+G K IR P
Sbjct: 307 ------------------SPVYK-------SYIEVPRGVCYHSY-GLEDGKVRHSIIRTP 340
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+++ AM+ C GH + D + S D F DR
Sbjct: 341 SMSNIGAMQESCIGHPIQDAQLAIVSCDPCFTCTDR 376
>gi|147669954|ref|YP_001214772.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Dehalococcoides sp.
BAV1]
gi|146270902|gb|ABQ17894.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Dehalococcoides sp.
BAV1]
Length = 526
Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats.
Identities = 96/387 (24%), Positives = 156/387 (40%), Gaps = 34/387 (8%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
+ + GP H GE + ++ + HRG EKL K + + +
Sbjct: 173 YEVGVGPVHAGIIEPGHFRFSAIGEPILNLEVRLFYTHRGLEKLAMGKDIDFGLKIAEGI 232
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+AY+ AVE + P R + +R++ E+ R+ SHL +++ DVG
Sbjct: 233 SGDESAANTYAYSSAVEHICSSRPPRRAEQLRLILLEMERLYSHLADLSGMLTDVGYPVG 292
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
RE+LM + +R +GSR PGG+ +DIP EL+ ++ + +F ++
Sbjct: 293 AASLSALREELMRWNKRLTGSRFLKGIIAPGGLLKDIPGELITELADYLYAFEGRFSEQV 352
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
+ R G V +GV R SG A D R +QPY Y EL F +P
Sbjct: 353 EKALAKTSVVDRFETTGIVNNRLLIPLNITGVTARASGEAIDTRLNQPYGFYPELSFKLP 412
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
+ GD R+ VR+ E++ S+ +I + +L P+ +
Sbjct: 413 VLPEGDVMARFRVRLSEVQTSLGLILKTAAKLSAGEYAIPLKPVNGY------------- 459
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
SLI VE+P+G+ +L K R K+R Y + QA+
Sbjct: 460 -SLI-------------------LVESPRGQSLHWLWLR-DGKIERYKVRTASYCNWQAI 498
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVD 395
E G + D I SL++ + D
Sbjct: 499 EHAVLGDIIPDFPLINKSLNLSYAGTD 525
>gi|5734565|emb|CAB52791.1| hydrogenase large subunit [Methanothermobacter thermautotrophicus]
Length = 376
Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats.
Identities = 94/396 (23%), Positives = 152/396 (38%), Gaps = 36/396 (9%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K++ I G H AA R+ L ++ EIV + +G+ HRG E+++E +A
Sbjct: 4 KREIIETEITMGTVHSAAIEPYRVRLFVEDEIVRDAEITVGVNHRGIERIMEGLPVEKAN 63
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
+++ + L EK LG+EIP R IR++ E+ RI SHLL +
Sbjct: 64 SLTEKVCGICSGVHLWNSILVAEKGLGVEIPERASYIRIIVGELERIHSHLLYLAHGNEV 123
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG--GVHQDIPPELVEDIGCWCDSF 180
+G T + F RE +M G+R+ G D+ + I D
Sbjct: 124 LGHETFSMRLFYIRETVMELLRLIGGNRVQYGVPIIGGIRPRADLDEMKTQRISEGMDFI 183
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ ++ T + + R + + +DA +G +R +G +DLR P CY
Sbjct: 184 EEKVEAFAERFTSDPMVMSRITGVCPISRKDALRLHVTGPTLRATGVEFDLRTEMP--CY 241
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+FD+ GD L+R++E+ ES+ IIRQ + L V +
Sbjct: 242 DPFEFDVITQDGGDVRANLLMRVLEIFESINIIRQALRDLPDGRVVDRNWEMQDTGIVKS 301
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
VEAP+G + IR P
Sbjct: 302 Y-------------------------------VEAPRGRLYHSYAI-EDGRVRGSIIRTP 329
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+++ AM++ C GH + D + D F DR
Sbjct: 330 SMSNIGAMQYACIGHHITDAQLGIVQCDPCFTCTDR 365
>gi|167616029|ref|ZP_02384664.1| hydrogenase-3, subunit E [Burkholderia thailandensis Bt4]
Length = 559
Score = 249 bits (637), Expect = 5e-64, Method: Composition-based stats.
Identities = 90/386 (23%), Positives = 142/386 (36%), Gaps = 8/386 (2%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H + GE V R++ +G HRG E+L+E L R+
Sbjct: 181 EIAVGPIHAGVIEPGHFRFSVVGEKVLRLEERLGYAHRGIERLLERADALAGSRLAARIA 240
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + AY +A+E+ + I +P R +R L E R+ +HL ++ D G
Sbjct: 241 GDSTVAFTWAYCMALEQAMKIRVPDRALRLRALLLERERVANHLGDLGALGNDAGFAVGL 300
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+E + +R G R PGGV D+ + E I CD + +
Sbjct: 301 AHFSRLKEDWLRLSDRIFGHRHLMDRIVPGGVRHDLSADDAEAIVAQCDRIEHEVRAMQT 360
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + R G + A +G G++ R SG D+R Y + D+
Sbjct: 361 IYDDQSGLQDRLAGTGLLTARTAAHFGVCGLVARASGQPRDVRADHRLAPYDAVPIDVAS 420
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD R VR E ES+++IR + L G V+ + P A
Sbjct: 421 DARGDVAARVAVRFAETYESMRVIRALLAGLPGDGIAAEVALAANVPSNPAGAA------ 474
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
H + + VE +G V L D RC P + + A+E
Sbjct: 475 --EAHGEGHAGNAAPEARRGVGWVEGWRGPVLVALELDARGGVARCHCHDPSWHNWPALE 532
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
G+ +AD I S ++ + D
Sbjct: 533 HAIIGNIVADFPLINKSFNLNYAGHD 558
>gi|161075801|gb|ABX56648.1| putative formate hydrogenlyase [Methylacidiphilum infernorum V4]
Length = 508
Score = 249 bits (637), Expect = 5e-64, Method: Composition-based stats.
Identities = 86/385 (22%), Positives = 152/385 (39%), Gaps = 32/385 (8%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
+ GP H + GEIV R++ +G H+G E L + + + R+
Sbjct: 155 VPVGPVHAGIIEPGHFRFTMSGEIVVRMEERLGYTHKGIESLFSGASIDKGMEIAGRISG 214
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ + + YALAVE+ LGI P R + IR L +E+ R+ +H +V D
Sbjct: 215 DSTVAYAYGYALAVEEALGISPPPRAEWIRALMAELERMANHFGDVGAICNDAAFPRILS 274
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
REK++ + G R+ GGV +D+ E + I ++ + + D
Sbjct: 275 RCALLREKILRCAQSCFGHRLMRDKIVVGGVKEDLNAEGLSRIRELLETIKEEVVCLKDF 334
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
+ R V G + A +G G + R SG +D RK+ Y+ Y L F++P+
Sbjct: 335 YDSKNSLQDRTVGTGVLDRRLAELFGAGGFIGRASGRNFDSRKAFAYKPYDSLSFEVPVL 394
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
+ GD R +R++E+ +SVK++ Q + + + +
Sbjct: 395 EDGDVNARVWIRILEIEQSVKLLEQILEGMPPGSICAERIGGEG---------------- 438
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
G+ + VE+ +G+ ++ K RC R P + +E
Sbjct: 439 ---------------SGKGLSVVESFRGDILTWIEIY-NGKIIRCHPRDPSWFQWPLLEK 482
Query: 371 LCKGHQLADVSAILGSLDIVFGEVD 395
+ G +AD S + + D
Sbjct: 483 VIVGGVIADFPLCNKSFNCSYSGHD 507
>gi|124485397|ref|YP_001030013.1| ribosomal-protein-alanine acetyltransferase [Methanocorpusculum
labreanum Z]
gi|124362938|gb|ABN06746.1| NADH dehydrogenase (quinone) [Methanocorpusculum labreanum Z]
Length = 361
Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats.
Identities = 86/395 (21%), Positives = 158/395 (40%), Gaps = 37/395 (9%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
KK ++ GP HP R+ E GE V + +G + +G EK++ + + + +
Sbjct: 2 KKVVDVSLPVGPIHPCFKEPCRIKCETRGERVVTTEVELGYVKKGIEKIMIGRPWQETIF 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+R+ + + A+EK+ GI +P R +L+R++ +E+ RI SHLL + +
Sbjct: 62 LAERVCGICSVVHNTVIVEALEKISGITVPRRAELLRLILNELDRIQSHLLANYSYCYTI 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
T ++ RE M E +G+R+ +AY PGGV +D+ + I +
Sbjct: 122 EHETLGMYLLNLRETAMDSIEMMTGTRVMSAYVVPGGVREDLSADDAAKILEATYHIETE 181
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L + + R+ IG + +EDA G G R +G D RK P Y E+
Sbjct: 182 LKRFVKMFETGPMIGLRSRGIGVLSMEDALASGVVGPTARATGLPRDARKDDP--LYLEM 239
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+ + D Y R ++R E+ +S+ + + + + G +
Sbjct: 240 GWHMITRTESDNYARIMLRFEELFQSLTL----IRNGIAALEPGKIRN------------ 283
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
G + G + +EAP+G+ + D + I+ P
Sbjct: 284 -----------------GGRMKAGRIKHTIEAPRGDLTYDIEIDDAGQVVFVSIQTPSIP 326
Query: 364 HLQAMEFLCKGHQ--LADVSAILGSLDIVFGEVDR 396
+++ + ADV++ S D +R
Sbjct: 327 NIEVATHAMMKNLASAADVTSTFISADPCIACAER 361
>gi|257142584|ref|ZP_05590846.1| hydrogenase-3, subunit E [Burkholderia thailandensis E264]
Length = 546
Score = 249 bits (636), Expect = 6e-64, Method: Composition-based stats.
Identities = 90/386 (23%), Positives = 142/386 (36%), Gaps = 8/386 (2%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H + GE V R++ +G HRG E+L+E L R+
Sbjct: 168 EIAVGPIHAGVIEPGHFRFSVVGEKVLRLEERLGYAHRGIERLLERADALAGSRLAARIA 227
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + AY +A+E+ + I +P R +R L E R+ +HL ++ D G
Sbjct: 228 GDSTVAFTWAYCMALEQAMKIRVPDRALRLRALLLERERVANHLGDLGALGNDAGFAVGL 287
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+E + +R G R PGGV D+ + E I CD + +
Sbjct: 288 AHFSRLKEDWLRLSDRIFGHRHLMDRIVPGGVRHDLSADDAEAIVAQCDRIEHEVRAMQT 347
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + R G + A +G G++ R SG D+R Y + D+
Sbjct: 348 IYDDQSGLQDRLAGTGLLTARTAAHFGVCGLVARASGQPRDVRADHRLAPYDAVPIDVAS 407
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD R VR E ES+++IR + L G V+ + P A
Sbjct: 408 DARGDVAARVAVRFAETYESMRVIRALLAGLPGDGIAAEVALAANVPSNPAGAA------ 461
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
H + + VE +G V L D RC P + + A+E
Sbjct: 462 --EAHGEGHAGNAAPEARRGIGWVEGWRGPVLVALELDARGGVARCHCHDPSWHNWPALE 519
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
G+ +AD I S ++ + D
Sbjct: 520 HAIIGNIVADFPLINKSFNLNYAGHD 545
>gi|126179132|ref|YP_001047097.1| NADH dehydrogenase (ubiquinone) [Methanoculleus marisnigri JR1]
gi|125861926|gb|ABN57115.1| membrane-bound hydrogenase subunit ehaO [Methanoculleus marisnigri
JR1]
Length = 362
Score = 249 bits (636), Expect = 6e-64, Method: Composition-based stats.
Identities = 95/396 (23%), Positives = 160/396 (40%), Gaps = 38/396 (9%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
KK+ +I GP HP +RL E GE V + + +G + +G E+++ + + + +
Sbjct: 2 KKTVDVSIPLGPMHPCWKEPVRLKCETAGERVLKTELELGYMKKGIERIMRGRPWQEVMF 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+R+ + + + +E++ I +P R +RV+ +E+ R+ SH+L + +
Sbjct: 62 LAERVCGICSVVHNMVFIETMEEISDIPVPPRAAYLRVVVNELDRMASHILANFSYCYTI 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
T ++ RE ++ ER +GSR++ AY PGGV D+ PE +
Sbjct: 122 EHETLAMYLLNIRETVLDNLERITGSRINTAYMIPGGVRFDLLPEDAAALLADLAKVEEE 181
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA-AWDLRKSQPYECYSE 242
+ + + R+ IG + E+A G R SG DLR P Y E
Sbjct: 182 MKRYVRIFETGPLIALRSKGIGYMSREEAIRAHTVGPTARASGVEDSDLRLRHPT--YRE 239
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
L F GD + R +VR E+ +S+ +IR+CV L G
Sbjct: 240 LGFTQITRTEGDNFARVMVRFQEVFQSIDLIRKCVETLPEGPIRG--------------- 284
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
G GE A EAP+GE + +D + IR P
Sbjct: 285 ------------------GGLCKAGEASYAGEAPRGELTYTIKTDEYGRVVDIAIRTPSI 326
Query: 363 AHLQAMEFLCK--GHQLADVSAILGSLDIVFGEVDR 396
+++A +ADV++ S D +R
Sbjct: 327 MNIEACAHSMIVDAASIADVTSTFISSDPCIACNER 362
>gi|83717987|ref|YP_439461.1| hydrogenase-3 subunit E [Burkholderia thailandensis E264]
gi|83651812|gb|ABC35876.1| hydrogenase-3, subunit E [Burkholderia thailandensis E264]
Length = 559
Score = 249 bits (635), Expect = 7e-64, Method: Composition-based stats.
Identities = 90/386 (23%), Positives = 142/386 (36%), Gaps = 8/386 (2%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H + GE V R++ +G HRG E+L+E L R+
Sbjct: 181 EIAVGPIHAGVIEPGHFRFSVVGEKVLRLEERLGYAHRGIERLLERADALAGSRLAARIA 240
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + AY +A+E+ + I +P R +R L E R+ +HL ++ D G
Sbjct: 241 GDSTVAFTWAYCMALEQAMKIRVPDRALRLRALLLERERVANHLGDLGALGNDAGFAVGL 300
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+E + +R G R PGGV D+ + E I CD + +
Sbjct: 301 AHFSRLKEDWLRLSDRIFGHRHLMDRIVPGGVRHDLSADDAEAIVAQCDRIEHEVRAMQT 360
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + R G + A +G G++ R SG D+R Y + D+
Sbjct: 361 IYDDQSGLQDRLAGTGLLTARTAAHFGVCGLVARASGQPRDVRADHRLAPYDAVPIDVAS 420
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD R VR E ES+++IR + L G V+ + P A
Sbjct: 421 DARGDVAARVAVRFAETYESMRVIRALLAGLPGDGIAAEVALAANVPSNPAGAA------ 474
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
H + + VE +G V L D RC P + + A+E
Sbjct: 475 --EAHGEGHAGNAAPEARRGIGWVEGWRGPVLVALELDARGGVARCHCHDPSWHNWPALE 532
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
G+ +AD I S ++ + D
Sbjct: 533 HAIIGNIVADFPLINKSFNLNYAGHD 558
>gi|158425980|ref|YP_001527272.1| NADH-ubiquinone oxidoreductase [Azorhizobium caulinodans ORS 571]
gi|158332869|dbj|BAF90354.1| NADH-ubiquinone oxidoreductase [Azorhizobium caulinodans ORS 571]
Length = 504
Score = 249 bits (635), Expect = 8e-64, Method: Composition-based stats.
Identities = 87/386 (22%), Positives = 151/386 (39%), Gaps = 30/386 (7%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ GP H +GE V R++ +G +HRG E L+ + +A R+
Sbjct: 148 EVAVGPVHAGIIEPGHFRFTANGEAVVRLEERLGYVHRGIEGLMRGASLERAATLAGRVS 207
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + A+A AVE L +E P R + +R L +E+ R+ +H ++ D
Sbjct: 208 GDSTVAYALAFAGAVEAALEMEAPPRARWLRGLMAELERLANHFGDIGAVCNDAAFARML 267
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
RE+++ E A G RM PGGV D+ P + ++ SAL ++
Sbjct: 268 APCAVLREQVLRASEAAFGQRMMRDLVVPGGVLIDLAPRGEGRLRSLVETARSALPELLA 327
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
L G + R V G + + +G G + R SG +D+R++ PY Y L FD+ +
Sbjct: 328 LYDGTASLQDRTVGTGIAQPDLVRRFGCGGFVGRASGRGFDVRRTLPYAPYDALRFDVAV 387
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
+ GD R +R E ES+ +I Q ++ + +
Sbjct: 388 LEAGDVDARVRIRFSEAEESLSLITQMLSNMPDGGDLSSPLPQSGAAR------------ 435
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
E A VE +G+ ++ D + +R P + +E
Sbjct: 436 ------------------EGVALVEGFRGDVFAFVRLDAAGRVAHAHLRDPSWFQWPVLE 477
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
+ +G+ +AD S + + D
Sbjct: 478 AVIEGNIIADFPLCNKSFNCSYAGHD 503
>gi|322420680|ref|YP_004199903.1| NADH-ubiquinone oxidoreductase chain 49kDa [Geobacter sp. M18]
gi|320127067|gb|ADW14627.1| NADH-ubiquinone oxidoreductase chain 49kDa [Geobacter sp. M18]
Length = 503
Score = 248 bits (634), Expect = 9e-64, Method: Composition-based stats.
Identities = 83/386 (21%), Positives = 140/386 (36%), Gaps = 31/386 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ GP H + GE V ++ +G HRG E++++ + + + +
Sbjct: 148 EVAVGPVHAGIIEPGHFRFQCFGEEVMHLEISLGYQHRGVERMMQGRPGERMRKLMETVA 207
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ AYA+ VE L +P R Q +R + E+ R+ +H ++ + DVG L
Sbjct: 208 GDTSIGHGTAYAMIVEALSDTRVPARAQAVRGIALELERLANHTGDMGAISGDVGYLPTA 267
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ R + GSR PGGV D+ + + + + + D
Sbjct: 268 SFCGRIRGDFLNMTAGICGSRFGRDLVVPGGVRFDLGSQGAQQLSDRIKVARDEVQNAVD 327
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
LL R G V + A G G R SG D+R+ P+ YS +
Sbjct: 328 LLWDTPSVLARLEGTGVVSEQSATDLGLVGPAARASGLNRDIRRDHPFGIYSMSLIPVET 387
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
K GD Y R LVR +EM +S+ I + +++L G P +
Sbjct: 388 AKTGDVYARTLVRWLEMEKSLDFIEEQLSQLPGVAVRNPAGQVAGDRL------------ 435
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
A E +GE ++D R KI P + + +
Sbjct: 436 -------------------AVALTEGWRGEICHVALTDEQGLFQRYKITDPSFHNWSGLA 476
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
+G Q++D S ++ + D
Sbjct: 477 LALRGGQISDFPLCNKSFNLSYCGFD 502
>gi|58042491|gb|AAW63686.1| NADH dehydrogenase subunit 7 [Berberis bealei]
Length = 282
Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats.
Identities = 159/286 (55%), Positives = 204/286 (71%), Gaps = 4/286 (1%)
Query: 25 RLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAV 84
R +LE++GE+VER +PHIG LHRGTEKLIE KT+LQA+PY DR DYV+ M QEHA++ AV
Sbjct: 1 RSVLEMNGEVVERAEPHIGSLHRGTEKLIEYKTYLQALPYSDRSDYVSTMAQEHAHSSAV 60
Query: 85 EKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYE 144
E+LL E+P+R Q IRV + EI RI +H L TT AMDVGA TP LW EEREKL+ F+E
Sbjct: 61 ERLLNCEVPLRAQYIRVSFREITRISNHSLASTTHAMDVGASTPSLWASEEREKLLEFHE 120
Query: 145 RASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNI 204
R G+RMHA++ RPGGV QD+P L DI F S +++ ++ TGNRI+KQR V+I
Sbjct: 121 RVPGARMHASFIRPGGVAQDLPLGLCRDIDSSTQQFASRIDESEEMSTGNRIWKQRLVDI 180
Query: 205 GTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMM 264
GTV + A WGFSGVM+RG G WD R++ PY+ + + D D+P+G GD YDRY +R+
Sbjct: 181 GTVTAQQAKDWGFSGVMLRGRGVCWDSRRAAPYDVHDQSDPDVPVGTRGDRYDRYCIRIE 240
Query: 265 EMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
EMR+SV+II QC N++ G + A D K+ PP R MK SMES
Sbjct: 241 EMRQSVRIIVQCPNQM----PSGMIKADDRKLCPPSRCRMKLSMES 282
>gi|78223794|ref|YP_385541.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Geobacter
metallireducens GS-15]
gi|78195049|gb|ABB32816.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Geobacter
metallireducens GS-15]
Length = 506
Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats.
Identities = 81/386 (20%), Positives = 138/386 (35%), Gaps = 31/386 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ GP H + GE V ++ +G HRG E + + + +
Sbjct: 151 EVAVGPVHAGIIEPGHFRFQCHGEEVFHLEISLGYQHRGIEAGLAGGPHPRTLQVMETAA 210
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ AY + +E L GI+ P R +++R + E+ R+ +H ++ A DVG L
Sbjct: 211 GDTTIGHGQAYCMIMESLGGIKAPPRAEVLRGIALELERLANHTGDLGAIAGDVGYLPTS 270
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ R + GSR PGG D+ P L +D+ L + +
Sbjct: 271 SFCGRIRGDFLNMTAVLCGSRFGRGLLVPGGTIFDLTPGLRDDLLKRLAEARRDLTNAIE 330
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
LL + R GT+ E A G G R G D+R P+ Y +
Sbjct: 331 LLWSSPSVMGRLEGTGTLTREQALELGLVGPAARACGIKRDVRLDYPFGIYRMTHLPVAT 390
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
HGD R ++R +E ++S+ I + + +L G P +
Sbjct: 391 VFHGDVCARTMIRWLEAQKSMDFIEEQLRQLPGGG-------HRVATAPCAGGRL----- 438
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
A E +GE ++D + R KI P + + Q +
Sbjct: 439 -------------------AVALTEGWRGEICHVAVTDDAGRFSRYKIVDPSFHNWQGLA 479
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
+G Q++D S ++ + D
Sbjct: 480 LALRGQQISDFPLCNKSFNLSYCGFD 505
>gi|224370959|ref|YP_002605123.1| HyfG [Desulfobacterium autotrophicum HRM2]
gi|223693676|gb|ACN16959.1| HyfG [Desulfobacterium autotrophicum HRM2]
Length = 503
Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats.
Identities = 89/386 (23%), Positives = 139/386 (36%), Gaps = 30/386 (7%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ GP H + GE V ++ +G HRG E ++ + + YF+ L
Sbjct: 147 EVAVGPVHAGIIEPGHFRFQCHGETVYHLEISLGYQHRGVEPALKDGPDKRTLHYFETLA 206
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ A +E L GI++P RGQ IR + +E+ RI +H+ ++ + DVG L
Sbjct: 207 GDTSIGHGTAGCCMIEALAGIDVPPRGQAIRAIAAELERIANHIGDLGAISGDVGFLPTM 266
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ R + G+R PGG DI ++ D + + +
Sbjct: 267 SYCGRIRGDALNLTAMICGNRFGRGLVIPGGTAWDITHAQTGELLRRLDEIHADAHSAIE 326
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
L+ R N G V + A G G+ R SG D+R S PYE Y +
Sbjct: 327 LMLNTPSVLARLENTGQVPTQTAREIGLVGLAARASGLKQDVRTSHPYENYRLTPLPVIT 386
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
K GDC R +R E++ S K IR + L G
Sbjct: 387 RKTGDCLARAQIRWGEIQASFKFIRTLLADLPGGEVANLW-------------------- 426
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
EG P VE +GE +D K KI P + + +
Sbjct: 427 ----------EGKLPPQKMATILVEGWRGEICHTAATDSAGKFSFYKIVDPSFHNWFGVS 476
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
+ Q++D S ++ + D
Sbjct: 477 LALRNQQISDFPLCNKSFNLSYCGHD 502
>gi|218672654|ref|ZP_03522323.1| NADH dehydrogenase subunit D [Rhizobium etli GR56]
Length = 201
Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats.
Identities = 163/200 (81%), Positives = 185/200 (92%)
Query: 197 FKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCY 256
FKQRNV+IG V LED W WGFSGVM+RGSGAAWDLR++QPYECYS+L+FDIPIGK+GD Y
Sbjct: 2 FKQRNVDIGVVSLEDCWAWGFSGVMVRGSGAAWDLRRAQPYECYSDLEFDIPIGKNGDNY 61
Query: 257 DRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFK 316
DRYL+RM+EMRESV+I++QCVNRLL K GP S+ D K+VPPKR +MKRSME+LIHHFK
Sbjct: 62 DRYLIRMIEMRESVRIMKQCVNRLLSDAKTGPFSSIDGKVVPPKRGEMKRSMEALIHHFK 121
Query: 317 LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQ 376
LYTEGYHVP GEVYAAVEAPKGEFGVYL+SDG NKPYRCKIRAPGYAHLQAM+F+C+GHQ
Sbjct: 122 LYTEGYHVPAGEVYAAVEAPKGEFGVYLVSDGSNKPYRCKIRAPGYAHLQAMDFMCRGHQ 181
Query: 377 LADVSAILGSLDIVFGEVDR 396
LADV+A+LGSLDIVFGEVDR
Sbjct: 182 LADVAAVLGSLDIVFGEVDR 201
>gi|198283918|ref|YP_002220239.1| NADH-ubiquinone oxidoreductase chain 49kDa [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218665490|ref|YP_002426552.1| hydrogenase-4, G subunit [Acidithiobacillus ferrooxidans ATCC
23270]
gi|198248439|gb|ACH84032.1| NADH-ubiquinone oxidoreductase chain 49kDa [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218517703|gb|ACK78289.1| hydrogenase-4, G subunit [Acidithiobacillus ferrooxidans ATCC
23270]
Length = 515
Score = 247 bits (632), Expect = 2e-63, Method: Composition-based stats.
Identities = 86/386 (22%), Positives = 144/386 (37%), Gaps = 32/386 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H ++ GE + ++ G H+G E+L++ R+
Sbjct: 161 EIPVGPIHAGIIEPGHFRFQVLGEEILHLEERFGYTHKGVERLLQGLDVDAGARLAGRIS 220
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + +YA AVE++ +++P R Q +R L E R+ +HL ++ D G
Sbjct: 221 GDSTVAYAWSYAQAVEQIAAMQVPERAQWLRALCLERERLANHLGDIGALGNDAGLAFAL 280
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+E L+ + G R PGGV D+ V + + +A+ + +
Sbjct: 281 TQFQALKEDLLRENQCYIGHRYLMDRVLPGGVGFDLTAVAVAALRSAGQALGTAVARLQE 340
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+L + + R V +G + E A G GV R SG WD R P Y ++ +
Sbjct: 341 ILAEHGGLRDRVVRLGVISPERAAHLGLMGVAGRASGQPWDQRIQFPQPPYDQIQVRMTT 400
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD R VR +E+ ES+++ + + +L G N P D
Sbjct: 401 ATEGDVAARMAVRFLEIFESLRLQEEILRKLPGGNVRQPPDLRDAT-------------- 446
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
GE VE +GE +L RC + P + A+E
Sbjct: 447 -----------------GEGVGWVEGWRGEVFFWLRL-EQGHIRRCHPQDPSWTLWPALE 488
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
+AD I S ++ + D
Sbjct: 489 EAVLRDIVADFPLINKSFNLSYSGHD 514
>gi|167577904|ref|ZP_02370778.1| hydrogenase-3, subunit E [Burkholderia thailandensis TXDOH]
Length = 559
Score = 247 bits (632), Expect = 2e-63, Method: Composition-based stats.
Identities = 91/386 (23%), Positives = 141/386 (36%), Gaps = 8/386 (2%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H + GE V R++ +G HRG E+L+E L R+
Sbjct: 181 EIAVGPIHAGVIEPGHFRFSVVGEKVLRLEERLGYAHRGIERLLERADALAGSRLAARIA 240
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + AY +A+E+ + I +P R +R L E R+ +HL ++ D G
Sbjct: 241 GDSTVAFTWAYCIALEQAMKIRVPDRALRLRALLLERERVANHLGDLGALGNDAGFAVGL 300
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+E + +R G R PGGV DI + E I CD + +
Sbjct: 301 AHFSRLKEDWLRLSDRIFGHRHLMDRIVPGGVRHDISADDAEAIVAQCDRIEHEVRAMQT 360
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + R G + A +G G++ R SG D+R Y + D+
Sbjct: 361 IYDDQSGLQDRLAGTGLLTARTAAHFGVCGLVARASGQPRDVRADHRLAPYDAVPIDVAS 420
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD R VR E ES++ IR + L G V+ + P A
Sbjct: 421 DARGDVAARVAVRFAETYESMRAIRALLAGLPGDGIAAEVTLAANVPSNPAGAA------ 474
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
H + + VE +G V L D RC P + + A+E
Sbjct: 475 --EAHGEGHAGDAAPEARRGIGWVEGWRGPVLVALELDAHGGVARCHCHDPSWHNWPALE 532
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
G+ +AD I S ++ + D
Sbjct: 533 HAIIGNIVADFPLINKSFNLNYAGHD 558
>gi|211948047|gb|ACJ13746.1| HyqG [Azorhizobium caulinodans ORS 571]
Length = 504
Score = 247 bits (632), Expect = 2e-63, Method: Composition-based stats.
Identities = 87/386 (22%), Positives = 151/386 (39%), Gaps = 30/386 (7%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ GP H +GE V R++ +G +HRG E L+ + +A R+
Sbjct: 148 EVAVGPVHAGIIEPGHFRFTANGEAVVRLEERLGYVHRGIEGLMRGASLERAATLAGRVS 207
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + A+A AVE L +E P R + +R L +E+ R+ +H ++ D
Sbjct: 208 GDSTVAYALAFAGAVEAALEMEAPPRARWLRGLMAELERLANHFGDIGAVCNDAAFARML 267
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
RE+++ E A G RM PGGV D+ P + ++ SAL ++
Sbjct: 268 APCEVLREQMLRASEAAFGQRMMRDLVVPGGVLIDLAPRGEGRLRSLVETARSALPELLA 327
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
L G + R V G + + +G G + R SG +D+R++ PY Y L FD+ +
Sbjct: 328 LYDGTASLQDRTVGTGIAQPDLVRRFGCGGFVGRASGRGFDVRRTLPYAPYDALRFDVAV 387
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
+ GD R +R E ES+ +I Q ++ + +
Sbjct: 388 LEAGDVDARVRIRFSEAEESLSLITQMLSNMPDGGDLSSPLPQSGAAR------------ 435
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
E A VE +G+ ++ D + +R P + +E
Sbjct: 436 ------------------EGVALVEGFRGDVFAFVRLDAAGRVAHAHLRDPSWFQWPVLE 477
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
+ +G+ +AD S + + D
Sbjct: 478 AVIEGNIIADFPLCNKSFNCSYAGHD 503
>gi|27381454|ref|NP_772983.1| hydrogenlyase component [Bradyrhizobium japonicum USDA 110]
gi|27354622|dbj|BAC51608.1| blr6343 [Bradyrhizobium japonicum USDA 110]
Length = 503
Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats.
Identities = 88/385 (22%), Positives = 149/385 (38%), Gaps = 32/385 (8%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
+ GP H GE V R++ +G H+G E L+ +AV R+
Sbjct: 150 VAVGPVHAGIIEPGHFRFTASGETVARLEQRLGYTHKGIEGLMTGANLERAVQLAGRVSG 209
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ + A++ A E L + +P R +R L +E+ R+ +HL ++ D
Sbjct: 210 DSTVAYAFAFSRAAEAALQLVVPDRAAWLRALLAELERLANHLGDIGAICNDASFTLMHA 269
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
RE ++ + A G R+ PGGV +D+ E E I + + +L
Sbjct: 270 LCGVLRESILRASDTAFGHRLMRDIIVPGGVTRDLTEEGREIIRTTLHTIRLRFPALVEL 329
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
+ R V+ G +K A + G + R SG ++D R++ Y Y L FD+P+
Sbjct: 330 YDNTASLQDRTVDTGVLKAALARQYAVGGYVGRASGRSFDARRTLVYAPYDALRFDVPVL 389
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
GD R +R+ E+ +S+ +I Q ++RL
Sbjct: 390 NEGDVNARVWIRVREVEQSLLLIDQILDRLPDGPLGTH---------------------- 427
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
G+ E A VE +G+ V+L K RC +R P + +E
Sbjct: 428 ---------AGHRREAREGMAIVEGFRGDVLVWLRLR-DGKVERCHLRDPSWFQWPLLEA 477
Query: 371 LCKGHQLADVSAILGSLDIVFGEVD 395
+G+ +AD S + + D
Sbjct: 478 AIEGNIIADFPLCNKSFNCSYSGHD 502
>gi|91780243|ref|YP_555450.1| putative NADH-ubiquinone oxidoreductase subunit [Burkholderia
xenovorans LB400]
gi|91692903|gb|ABE36100.1| Putative NADH-ubiquinone oxidoreductase subunit [Burkholderia
xenovorans LB400]
Length = 522
Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats.
Identities = 86/386 (22%), Positives = 145/386 (37%), Gaps = 31/386 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H + GE V R++ +G HRG EKL + +L R+
Sbjct: 167 EIAVGPIHAGVIEPGHFRFSVVGEKVLRLEERLGYAHRGIEKLFQRTPWLLGQRLAARIA 226
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + AY +AVE+ + IP R Q +R L E RI +HL ++ D G
Sbjct: 227 GDSTVAFSWAYCMAVERAFEVRIPPRAQWLRALLLERERIANHLGDLGALGNDAGFAYGL 286
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+E + ++ G R PGG+ D+ P + + C+ + + +
Sbjct: 287 AAFSRLKEDWLRVNDQCFGHRYLMDRIAPGGMATDLDPRCIPAMLTQCEQIDAEVRAMQA 346
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + R G V + A +G G++ R SG D+R PY Y E+
Sbjct: 347 IYDDQSGLQDRFAGAGIVSAKVAEHFGVCGLVGRASGRKIDVRVDHPYAPYHEVQVRAVS 406
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD R VR E+ ES++++R ++ L G + V PV +
Sbjct: 407 DDRGDVAARVAVRFNEIYESLRLLRALLSDLPGGHVVTPVEHAGA--------------- 451
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
+E +G+ + + + RC P + + A+E
Sbjct: 452 ----------------PSCGVGWIEGWRGDVFIAVETGADGTLLRCHCHDPSWHNWPALE 495
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
G+ +AD I S ++ + D
Sbjct: 496 HAIIGNIVADFPLINKSFNLNYAGHD 521
>gi|195953676|ref|YP_002121966.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Hydrogenobaculum
sp. Y04AAS1]
gi|195933288|gb|ACG57988.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Hydrogenobaculum
sp. Y04AAS1]
Length = 478
Score = 246 bits (627), Expect = 7e-63, Method: Composition-based stats.
Identities = 82/388 (21%), Positives = 137/388 (35%), Gaps = 38/388 (9%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
SF I GP H L GE + +++ H+G EKL E KT + + +R
Sbjct: 128 SFKILVGPIHAGIIEPGHFRFTLIGEPILKLEIRHFYKHKGIEKLSEGKTPEEGLKLSER 187
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ + A+ AVEK+ I+IP + + IR + E+ R++ +L + DVG
Sbjct: 188 ISGDHSVAHSLAFVKAVEKIYDIDIPPKARYIRAILLELERLMCNLNDFAFIFQDVGYSF 247
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
F +E LM E +G+R + + GGV +++ I
Sbjct: 248 GAQKVFALKEMLMRLNETLTGNRFNRNIIKIGGVSKELDTN---AIKEVLGLLEKEYLKY 304
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
L + +R G + E A G + + S +D R + Y L
Sbjct: 305 KKLFLNSSTVLERTDTTGRIFYETAKKHAALGYVAKASNIFFDTRAILEKDLYGSL-VKA 363
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
+ GD R VR ++ ES II+ + + + +
Sbjct: 364 FKLEKGDVSARVKVRFNDIEESSNIIKTFIENMPLGDIAKNI------------------ 405
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
GE + E +G +L R KIR P + +
Sbjct: 406 ---------------EPKDGEAFGYEEGQRGNITHFLRI-EQGLISRWKIRDPSFHNWPI 449
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVD 395
++ G +AD I SL++ + D
Sbjct: 450 IQKAVLGDIIADFPLINKSLNLSYAGND 477
>gi|222054797|ref|YP_002537159.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Geobacter sp.
FRC-32]
gi|221564086|gb|ACM20058.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Geobacter sp.
FRC-32]
Length = 507
Score = 245 bits (626), Expect = 8e-63, Method: Composition-based stats.
Identities = 78/388 (20%), Positives = 138/388 (35%), Gaps = 35/388 (9%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ GP H + GE V ++ +G HRG E + + + + +
Sbjct: 152 EVAVGPVHAGVIEPGHFRFQCHGEEVFHLEIALGYQHRGIEAALIGGPKPRTLYEMETIA 211
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ A+ + +E L I +P + +++R + E+ R+ +H ++ A D G L
Sbjct: 212 GDTTVGHAWAHCMILESLANIHLPAKAEVLRGIGLELERLANHTGDLGAIAGDTGYLPTS 271
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ R + GSR RPGG D + +++ S L + D
Sbjct: 272 SYCGRIRGDFLNMSAILCGSRFSRGLIRPGGTGFDCSRKQSDELLQRLASARKDLTNAVD 331
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
L+ R GTV E A +G R G A D R+ P+ Y +
Sbjct: 332 LIWATPSVLARLEATGTVSRETAKELALTGPAARACGIATDTRQDFPFGIYQMSQIPVVT 391
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
+ GD Y R LVR +E +S++ + + + +L +
Sbjct: 392 ARSGDVYGRTLVRWLEAEKSLEFLEEQLRQLPSGRHATHMG------------------- 432
Query: 310 SLIHHFKLYTEGYHVPVGE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
P GE A E +GE ++D + R KI P + +
Sbjct: 433 --------------APAGERLAVALTEGWRGEVCHVALTDESGRFSRYKIVDPSFHNWPG 478
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ +G Q++D S ++ + D
Sbjct: 479 LAMALRGQQISDFPLCNKSFNLSYCGFD 506
>gi|119718684|ref|YP_925649.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Nocardioides sp.
JS614]
gi|119539345|gb|ABL83962.1| NADH dehydrogenase subunit C [Nocardioides sp. JS614]
Length = 391
Score = 245 bits (626), Expect = 9e-63, Method: Composition-based stats.
Identities = 86/395 (21%), Positives = 142/395 (35%), Gaps = 37/395 (9%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
++ + + I GP H + GE + R+ + +HRG EKL E +
Sbjct: 33 LEVEGDGVYEIPVGPVHAGMIEPGHFRFSVIGETILRLKARLWFVHRGVEKLFEGRRPED 92
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AV +R+ + A+A AVE LGIE+P R +L R L E+ R+ +H ++ A
Sbjct: 93 AVELAERISGDTAVGHTTAFATAVEDALGIEVPERDRLGRALLLELERMHNHAADLGALA 152
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
DVG RE L+ + +G R+ GG D P+ ++
Sbjct: 153 NDVGYGIVNTHALRIRESLLRLNKATTGHRLLRGGVGIGGTRIDALPD-----PAALEAV 207
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ + +++++ GN + R + E A G G + R SG D R+ P+
Sbjct: 208 AAEVAELAEITLGNSTVRDRFTGTAVLAAESARDLGTLGYVARASGIDRDARRDHPFVDL 267
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+ F + + GD RY VR+ E+ S + V RL V
Sbjct: 268 GDR-FHVVVETGGDVLARYRVRVREIAVSAAVAGDLVRRLSSGTGV-------------- 312
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ G VE +G + D + R KI P
Sbjct: 313 -----------------DSHTSAPGGGHGLGLVEGWRGTIAHRVEIDPSGRLSRVKIVDP 355
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ + A+ + D S + + D
Sbjct: 356 SFFNWPALPIALADTIVPDFPLANKSFNQSYAGND 390
>gi|303247449|ref|ZP_07333721.1| putative hydrogenase-4 component G [Desulfovibrio fructosovorans
JJ]
gi|302491145|gb|EFL51037.1| putative hydrogenase-4 component G [Desulfovibrio fructosovorans
JJ]
Length = 494
Score = 245 bits (626), Expect = 9e-63, Method: Composition-based stats.
Identities = 82/386 (21%), Positives = 138/386 (35%), Gaps = 30/386 (7%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ GP H + GE V ++ +G HRG E+L+ ++ + +
Sbjct: 138 EVAVGPVHAGIIEPGHFRFQCAGENVLHLEISLGYQHRGVERLLVGGPDIRTPHLVETVA 197
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ A+A VE L G + RG+ I L E+ R+ +H ++ + DVG L
Sbjct: 198 GDTTIGHALAHAAVVESLTGRDATPRGRWIARLALELERLANHTGDLGALSGDVGFLPTM 257
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ R + G+R RPGG D+ E ++ ++ A +
Sbjct: 258 SYCGRIRGDFLNMTALFCGNRFGRGIVRPGGAAVDLDEEARVELAKRLEAGRRAAFGACE 317
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
LL + R G + A G G R G + D R++ P D + +
Sbjct: 318 LLFASSTVLARFEGTGRLTATTAQELGLVGPPARACGLSRDARRTFPLPGTDPKDIPLSL 377
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD Y R LVR +E+ S+ +++ L GPV P +PP R
Sbjct: 378 HDFGDVYARALVRRLELETSLDF----LDKALADPPTGPVGRPMPDGLPPDRL------- 426
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
VE +GE ++ + KI P Y + +
Sbjct: 427 -------------------AVGIVEGWRGEVHHVAVTGPDGRFAAYKIIDPSYHNWFGLA 467
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
+G Q++D S ++ + D
Sbjct: 468 VALRGQQISDFPLCNKSFNLSYCGHD 493
>gi|240169559|ref|ZP_04748218.1| formate hydrogenase HycE [Mycobacterium kansasii ATCC 12478]
Length = 490
Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats.
Identities = 91/390 (23%), Positives = 138/390 (35%), Gaps = 42/390 (10%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV---PYF 65
+ I GP H + GE V R+ + +HRG EKL E + L A+
Sbjct: 139 YEIPVGPVHAGLIEPGHFRFSVIGESVLRLKARLWFVHRGIEKLFEGRNALGAMGSVELA 198
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
+R+ + AY+LAVE+ LG+ P +R L E+ R+ +H ++ A DVG
Sbjct: 199 ERISGDSAAAHSLAYSLAVEEALGLTAPEHVHRLRALLVELERLYNHATDLGALANDVGF 258
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
RE+L+ R +G R+ RPGGV PE + +
Sbjct: 259 ALANAHAQRVRERLLRINRRVTGHRLLRGAIRPGGVVLQELPE-----PDELRALAHEVA 313
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ISDL N + R + + +DA G G + R SG A D R P + L
Sbjct: 314 EISDLTLRNTVVYDRFADTAVLTRDDAHTVGCLGYVARASGIATDSRLDHPT---TTLPV 370
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
G GD RY +R E SV + + G + +
Sbjct: 371 TAVPGSGGDVLARYTIRRDEFAASVALACTLIEDHRGSLRSNASLTAT------------ 418
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
P VE +G + D + RCKI P + +
Sbjct: 419 -------------------PGNSGVGIVEGWRGTVVHRVEVDESGRITRCKIVDPSWFNW 459
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
A+ + D S ++ + D
Sbjct: 460 PALPVAMADTIVPDFPLANKSFNLSYAGND 489
>gi|253699703|ref|YP_003020892.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Geobacter sp. M21]
gi|251774553|gb|ACT17134.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Geobacter sp. M21]
Length = 503
Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats.
Identities = 90/386 (23%), Positives = 150/386 (38%), Gaps = 31/386 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ GP H + GE V ++ +G HR E+++ + L+ + + +
Sbjct: 148 EVAVGPVHAGIIEPGHFRFQCFGEEVMHLEISLGYQHRAVERMVLGRPGLRTLKCMETVA 207
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ AYA+ VE L +P + + IR + E+ R+ +H ++ A DVG L
Sbjct: 208 GDTTIGHGTAYAMVVEALSKARVPAKAEAIRGIALELERLANHTGDLGAIAGDVGYLPTA 267
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ R + GSR PGGV D+ EL E + D + + +
Sbjct: 268 SFCGRIRGDFLNMSAELCGSRFGRGLLTPGGVQFDVGRELAEKLRKRIDVARREVTNAVE 327
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
LL + R G V +DA G G R SG D+R+ P+ Y+ +
Sbjct: 328 LLWDSPSVMGRLEGTGVVSEKDALDLGLVGPAARASGLNRDIRRDHPFGIYNVTQLPVET 387
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
K GD Y R LVR +E+ +S+ I + + +L G + IV P + M
Sbjct: 388 AKGGDVYARTLVRWLEIEKSLHFIEEQLAQLPGGS-----------IVAPATQVGENRM- 435
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
A VE +GE ++DG + R KI P + + +
Sbjct: 436 -------------------ALALVEGWRGELCHVALTDGNGEFRRYKITDPSFHNWSGLA 476
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
+G Q++D S ++ + D
Sbjct: 477 MALRGGQISDFPLCNKSFNLSYCGFD 502
>gi|113868176|ref|YP_726665.1| formate hydrogenlyase subunit 5 [Ralstonia eutropha H16]
gi|113526952|emb|CAJ93297.1| formate hydrogenlyase subunit 5 [Ralstonia eutropha H16]
Length = 516
Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats.
Identities = 86/386 (22%), Positives = 136/386 (35%), Gaps = 31/386 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H + GE V R++ H+G H+G E+ + R+
Sbjct: 161 EIAVGPVHAGIIEPGHFRFSVVGEKVLRLEEHLGYTHKGIERRFTELAPPEGYRLAGRVS 220
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + AY +A+E P R +R L E R+ +HL ++ D G
Sbjct: 221 GDSTVAYAWAYCMALESAWRCAPPPRADWLRALMLERERVANHLGDLGALGNDAGLAFGL 280
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
RE A G R+ PGGV QD+ P + E + C + +
Sbjct: 281 AQFSRLREDWQRLSAEAFGHRLMMDAVVPGGVAQDLAPAMAERLEQQCGHIEREVRVLRA 340
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + + R + G V + A G +G+ R SG A DLR + Y + +
Sbjct: 341 VYDEHAGLQDRFLGAGCVTPQLAARLGLTGLAGRASGCAADLRCDHAWRPYDSVAVKMAT 400
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
+ GD R VR E+ ES+++IR L +IVP A
Sbjct: 401 HRGGDVAARVAVRFDEVLESLRLIRAICAGLPEGA---------TRIVPQAPAG------ 445
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
VE +GE V L ++ RC P + + +E
Sbjct: 446 ----------------AAIGVGWVEGWRGEVLVALDLADDSRILRCHCHDPSWQNWPVLE 489
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
G+ + D I S ++ + D
Sbjct: 490 HAIIGNIVPDFPLINKSFNLSYSGHD 515
>gi|183981673|ref|YP_001849964.1| formate hydrogenase HycE [Mycobacterium marinum M]
gi|183174999|gb|ACC40109.1| formate hydrogenase HycE [Mycobacterium marinum M]
Length = 498
Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats.
Identities = 94/390 (24%), Positives = 146/390 (37%), Gaps = 38/390 (9%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTF---LQAVPYF 65
+ I GP H + GE + R+ + +HRG EKL E + +AV
Sbjct: 143 YEIPVGPVHAGLIEPGHFRFSVIGESILRLKARLWFVHRGVEKLFEGRNALGAREAVELA 202
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
+R+ + A+ LAVE LG+++P +R L E+ R+ +H+ ++ A DVG
Sbjct: 203 ERISGDSSAAHSLAHCLAVEDALGLDVPEPVHRLRALLVELERLYNHVTDLGALANDVGF 262
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
RE+++ R +G R+ A PGGV P+ E + + +
Sbjct: 263 ALANAHAQGIRERVLRINRRVTGHRLLRAAMAPGGVVLQELPDPAE-----LHAVAAEVA 317
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+IS+L N + R + EDA G G + R SG A D R P EL
Sbjct: 318 EISELTLRNSVVYDRFAETAVLHSEDARALGCLGYVARASGIATDARLDHPTA---ELPV 374
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
GD RY +R E SV + V G+ + PP A+
Sbjct: 375 TAVAAGGGDVLARYTIRRDEFAASVALACHLVENHHGRT----------RFAPPPAANGA 424
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
RS + VE +G + DG + RCKI P + +
Sbjct: 425 RSAVTS-----------------GVGIVEGWRGAVLHRVEVDGAGRITRCKIVDPSWFNW 467
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
A+ + D S ++ + D
Sbjct: 468 PALPVAMADTIVPDFPLANKSFNLSYAGND 497
>gi|197119558|ref|YP_002139985.1| Ech-hydrogenase-like complex large subunit [Geobacter bemidjiensis
Bem]
gi|197088918|gb|ACH40189.1| Ech-hydrogenase-related complex, large subunit [Geobacter
bemidjiensis Bem]
Length = 503
Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats.
Identities = 90/386 (23%), Positives = 152/386 (39%), Gaps = 31/386 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ GP H + GE V ++ +G HR E+++ + L+ + + +
Sbjct: 148 EVAVGPVHAGIIEPGHFRFQCFGEEVMHLEISLGYQHRAVERMVLGRPGLRTLKCMETVA 207
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ AYA+ VE L G +P + + IR + E+ R+ +H ++ A DVG L
Sbjct: 208 GDTTIGHGTAYAMVVEALCGARVPAKAEAIRGIALELERLANHTGDLGAIAGDVGYLPTA 267
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ R + GSR PGGV D+ EL + + D + + +
Sbjct: 268 SFCGRIRGDFLNMSAELCGSRFGRGLVTPGGVQFDVGRELADKLRKRIDVARREVTNAVE 327
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
LL + R G V +DA G G R SG D+R+ P+ Y+ +
Sbjct: 328 LLWDSPSVMGRLEGTGVVSEKDALDLGLVGPAARASGLNRDIRRDHPFGIYNVTQLPVET 387
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
K GD Y R LVR +E+ +S+ I + + +L G + V P A + +
Sbjct: 388 AKGGDVYARTLVRWLEIEKSLHFIEEQLAQLPGGSIVSPT------------AQLGENRM 435
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
+L A VE +GE ++DG R KI P + + +
Sbjct: 436 AL-------------------ALVEGWRGEVCHVALTDGSGDFQRYKITDPSFHNWSGLA 476
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
+G Q++D S ++ + D
Sbjct: 477 MALRGGQISDFPLCNKSFNLSYCGFD 502
>gi|297517940|ref|ZP_06936326.1| hydrogenase 4, subunit [Escherichia coli OP50]
Length = 486
Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats.
Identities = 91/361 (25%), Positives = 141/361 (39%), Gaps = 50/361 (13%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H + L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E GSR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ ++++ ++L +QR IG + + A DLR PY
Sbjct: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYAD 397
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 398 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------- 442
Query: 300 KRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
L TEG+ P VEAP+GE + + K +R + R
Sbjct: 443 -----------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 485
Query: 359 A 359
A
Sbjct: 486 A 486
>gi|89902057|ref|YP_524528.1| NADH-ubiquinone oxidoreductase subunit 49kDa [Rhodoferax
ferrireducens T118]
gi|89346794|gb|ABD70997.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Rhodoferax
ferrireducens T118]
Length = 519
Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats.
Identities = 82/389 (21%), Positives = 135/389 (34%), Gaps = 34/389 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H + GE V R++ +G H+G E+ + L A R+
Sbjct: 161 EIAVGPVHAGIIEPGHFRFSVVGEKVLRLEQRLGYTHKGIEQRMTQLDPLLAYRLAGRVS 220
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + Y +A+E +P R +R L E R+ +HL ++ D
Sbjct: 221 GDSTVAYAWGYCMALESASACAVPPRALWMRALMLERERVANHLGDLGALGNDAAFAFGL 280
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
RE + + G R+ PGGV DI ++ + CD+ + +
Sbjct: 281 AQFSRLREDWLRLSKEMFGHRLMMDCVLPGGVTHDIHGAHIDQLTRQCDAVEREVRTLRS 340
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + + R + G V A G +G+ R S AWDLR Y L +
Sbjct: 341 IYEEHAGLQDRFMTTGRVTPALAAQLGLTGLAGRASAQAWDLRCDHAAAPYDVLQVKMAT 400
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
+GD R VR E+ ES+++IRQ + L ++
Sbjct: 401 HSNGDVAARVSVRFDEVFESMRLIRQILAGLPAGPLRQDIALPG---------------- 444
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG---GNKPYRCKIRAPGYAHLQ 366
VE +GE V L G + RC + P + +
Sbjct: 445 ---------------QASRGAGWVEGWRGEIFVALELSGASSDQRIRRCHLHDPSWQNWP 489
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+E G+ + D I S ++ + D
Sbjct: 490 VLEHAVMGNIVPDFPLINKSFNLSYSGHD 518
>gi|220918886|ref|YP_002494190.1| NADH-ubiquinone oxidoreductase chain 49kDa [Anaeromyxobacter
dehalogenans 2CP-1]
gi|219956740|gb|ACL67124.1| NADH-ubiquinone oxidoreductase chain 49kDa [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 521
Score = 243 bits (620), Expect = 5e-62, Method: Composition-based stats.
Identities = 79/386 (20%), Positives = 140/386 (36%), Gaps = 31/386 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ GP H + GE V ++ +G HRG E+L+ +++ + +
Sbjct: 166 EVAVGPVHAGIIEPGHFRFQCHGERVFHLEIVLGYQHRGVERLLRGGPDRRSMALAESIA 225
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ AYA AVE L G+ R +R + E+ RI +H+ ++ A DVG L
Sbjct: 226 GDTAVGHGLAYAKAVESLAGVAPTARAMSLRGIGLELERIANHVGDLGALAGDVGFLPTA 285
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ R + + G+R + PGGV D+ E + + +
Sbjct: 286 SYCGALRAEFLNAVAEICGNRFGRSLVCPGGVKHDLDAEAARALAARVRAAWEKTRRAAS 345
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
L+ + + R GTV A G G R SG D+R+ + Y +
Sbjct: 346 LMFESPSVRARFEGTGTVPTALAQALGMVGPAARASGVDRDVRRDHAFGIYRFSHVAVTT 405
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
++GD R L+R++E SV+ + + RL G
Sbjct: 406 AENGDVLARALIRLLEAERSVEFVLDQLERLPGGP------------------------- 440
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
G P V + VE +GE ++D + K++ P + + +
Sbjct: 441 ------SRTAPGPLAPGALVVSMVEGWRGEIAHVAVTDAQGRLEAYKVKDPSFHNWFGLA 494
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
+ Q++D S ++ + D
Sbjct: 495 MALRDGQISDFPLCNKSFNLSYAGHD 520
>gi|86748389|ref|YP_484885.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Rhodopseudomonas
palustris HaA2]
gi|86571417|gb|ABD05974.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Rhodopseudomonas
palustris HaA2]
Length = 503
Score = 242 bits (619), Expect = 5e-62, Method: Composition-based stats.
Identities = 82/385 (21%), Positives = 147/385 (38%), Gaps = 32/385 (8%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
+ GP H + GE V R++ +G +H+G + LI A R+
Sbjct: 150 VAVGPVHAGIIEPGHFRFTVSGETVVRLEQRLGYVHKGIDGLIAGADLASAARLAGRVSG 209
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ + A++ AVE I +P R +R L +E+ R+ +HL ++ D
Sbjct: 210 DSTVAYALAFSRAVEAAAEIVVPARAVWLRALVAELERLANHLGDIGAVCNDAAFAIMLA 269
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
RE ++ + A G R+ PGGV +D+ + + L + +L
Sbjct: 270 QFGVLREHVLRAADAAFGHRLMRDVVMPGGVARDLDDNGKAAFRDALAAVRAKLPALIEL 329
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
+ R V+ G ++ A + G + R SG +D R++ Y Y +L FD+P+
Sbjct: 330 YDSTASLQDRTVSTGILRPALADQYAAGGFVGRASGRGFDARRTLAYAPYHQLRFDVPVL 389
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
GD R +R+ E+ +S+ ++ Q ++RL
Sbjct: 390 TEGDVDARIWIRIREVEQSLSLVDQILDRLPRGEI------------------------- 424
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
E A +E +G+ V+L RC +R P + +E
Sbjct: 425 ------RVAPELPDQACEGLALIEGFRGDILVWLRL-QDGVVARCHLRDPSWFQWPLLEA 477
Query: 371 LCKGHQLADVSAILGSLDIVFGEVD 395
+ +G+ +AD S + + VD
Sbjct: 478 VIEGNIIADFPLCNKSFNCSYSGVD 502
>gi|88603353|ref|YP_503531.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Methanospirillum
hungatei JF-1]
gi|88188815|gb|ABD41812.1| membrane-bound hydrogenase subunit ehaO [Methanospirillum hungatei
JF-1]
Length = 361
Score = 242 bits (619), Expect = 5e-62, Method: Composition-based stats.
Identities = 90/395 (22%), Positives = 153/395 (38%), Gaps = 37/395 (9%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
KK+ +I GP HP R+ E GE V + +G + +G E+++ + + + +
Sbjct: 2 KKTVDVSIPLGPVHPIFKEPCRIKCETFGEQVLAAEVELGYMKKGIERIMVGRPWQEVMF 61
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+R+ + + + +EK+ G+ +P R +RVL +E+ R+ SHL+ + +
Sbjct: 62 LAERVCGICSVIHNFVFIETMEKISGVTVPDRAAYLRVLANELDRMQSHLIANFSYCYTI 121
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
T ++ RE +M E +G+R+ AY PGGV D E + I D
Sbjct: 122 EHETIGMYLLNIRETVMDMLEYLTGARVTCAYIVPGGVRFDPDNEDLTRIMTAMDDVERE 181
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + R+ IG + E A G R G D R P Y L
Sbjct: 182 TRRYMSMFESGPLIGLRSKGIGVMTREQAELIHAVGPTARACGITTDCRSDHPT--YQRL 239
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+F + GD Y R ++R E+ +SV +IR + L G + +
Sbjct: 240 NFSPLVRTEGDNYARVMLRFQEILQSVDLIRTIIRTLPEGKIRGGGTIGRGETTHKG--- 296
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
EAP+GE + SD + I+ P
Sbjct: 297 ------------------------------EAPRGELTYRIKSDTHGRVQEISIQTPSIM 326
Query: 364 HLQA-MEFLCKG-HQLADVSAILGSLDIVFGEVDR 396
+++A ++ G +ADV+A S D +R
Sbjct: 327 NIEACARYMIPGVTSVADVTAAYISSDPCVACTER 361
>gi|153006623|ref|YP_001380948.1| NADH-ubiquinone oxidoreductase chain 49kDa [Anaeromyxobacter sp.
Fw109-5]
gi|152030196|gb|ABS27964.1| NADH-ubiquinone oxidoreductase chain 49kDa [Anaeromyxobacter sp.
Fw109-5]
Length = 515
Score = 242 bits (619), Expect = 6e-62, Method: Composition-based stats.
Identities = 74/386 (19%), Positives = 133/386 (34%), Gaps = 31/386 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ GP H + GE V ++ +G HRG E ++ +++ + +
Sbjct: 160 EVAVGPVHAGIIEPGHFRFQCHGEQVFHLEIVLGYQHRGIEPMLAGGPDRRSLALVESIA 219
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ A+ A+E L G P R +R + E+ R+ +H+ ++ A DVG L
Sbjct: 220 GDTVVGHGLAHVKALESLAGRPPPARAMALRGVALELERLANHVGDLGALAGDVGFLPTA 279
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ R + + G+R PGGV D+ + +
Sbjct: 280 SYCGALRAEFLNATAEICGNRFGRGLLVPGGVRFDLEEPAALALAERVRRAWDQTRRAAG 339
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
L + R GTV E A G G R SG D+R+ + Y + +
Sbjct: 340 LFFEAPSARARLEGTGTVSRETARALGLVGPAARASGVDRDVRRDHAFGIYRFVHVPVVT 399
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD + R +R++E S + L P A P+ +
Sbjct: 400 ADTGDVFARAWIRLLECERSAAFAVSQLESLPESGVREPAGALAPRSL------------ 447
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
V + VE +GE ++D + R K++ P + + +
Sbjct: 448 -------------------VVSMVEGWRGEIAHVAVTDEHGRLARYKVKDPSFHNWLGLA 488
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
+G Q++D S ++ + D
Sbjct: 489 MALRGGQISDFPLCNKSFNLSYAGHD 514
>gi|218460352|ref|ZP_03500443.1| NADH dehydrogenase subunit D [Rhizobium etli Kim 5]
Length = 224
Score = 242 bits (618), Expect = 8e-62, Method: Composition-based stats.
Identities = 196/224 (87%), Positives = 208/224 (92%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + R+F INFGPQHPAAHGVLRL+LELDGEIVERVDPHIGLLHRGTEKLIETKT+LQ
Sbjct: 1 MTEHNVRNFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIETKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVPYFDRLDYVAPMNQEHAYALAVEKLLGI+IPIRGQLIRVLYSEIGRILSHLLNVTTQA
Sbjct: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIDIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAY RPGGVHQD+P +LV+DIG WCD F
Sbjct: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYVRPGGVHQDLPEKLVQDIGDWCDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRG 224
AL+DI +LLTGNRIFKQRNV+IG V LED W WGFSGVM+RG
Sbjct: 181 LKALDDIDNLLTGNRIFKQRNVDIGVVSLEDCWAWGFSGVMVRG 224
>gi|134283388|ref|ZP_01770088.1| putative hydrogenase subunit [Burkholderia pseudomallei 305]
gi|134245137|gb|EBA45231.1| putative hydrogenase subunit [Burkholderia pseudomallei 305]
Length = 574
Score = 242 bits (617), Expect = 9e-62, Method: Composition-based stats.
Identities = 91/386 (23%), Positives = 140/386 (36%), Gaps = 4/386 (1%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H + GE V R++ +G HRG E+L E L R+
Sbjct: 192 EIAVGPIHAGVIEPGHFRFSVVGEKVLRLEERLGYAHRGVERLFERADALAGSRLAARIA 251
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + AY +A+E+ L I +P R +R L E R+ +HL ++ D G
Sbjct: 252 GDSTVAFAWAYCMALEQALRIRVPDRALRLRALLLERERVANHLGDLGALGNDAGFAVGL 311
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+E + +R G R PGGV +DI + I CD + +
Sbjct: 312 AHFSRLKEDWLRMQDRIFGHRYLMDAIVPGGVARDIAADDAAAIVAQCDRIEREVRAMQT 371
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + R G + + +G G+ R SG D+R Y L D+
Sbjct: 372 IYDDQSGLQDRFAGTGRLDAQAVAHFGVCGLAARASGQPRDVRADHRLAPYDALRIDVSR 431
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD R VR E ES++ IR + L ++ P RAD + E
Sbjct: 432 DARGDVAARVAVRFAETYESMRAIRALLADLPDDGLAAEIAPGA--TAPGARADAGGACE 489
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
+ G +E +G V L D RC P + + A+E
Sbjct: 490 GKEGGDAAFCPGDARR--RGIGWIEGWRGPVFVALELDARGAVARCHCHDPSWHNWPALE 547
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
G+ +AD I S ++ + D
Sbjct: 548 HAIIGNIVADFPLINKSFNLNYAGHD 573
>gi|312113081|ref|YP_004010677.1| NADH-ubiquinone oxidoreductase chain 49kDa [Rhodomicrobium
vannielii ATCC 17100]
gi|311218210|gb|ADP69578.1| NADH-ubiquinone oxidoreductase chain 49kDa [Rhodomicrobium
vannielii ATCC 17100]
Length = 504
Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats.
Identities = 90/385 (23%), Positives = 150/385 (38%), Gaps = 32/385 (8%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
I GP H +GE V R++ +G +H+G E L + + +A R+
Sbjct: 151 IPVGPVHAGIIEPGHFRFTANGETVARLEARLGYVHKGVEALAQGASIEKAAKLAARMSG 210
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ + A++ AVE LG EIP R Q++R + +E+ R+ H+ +V D
Sbjct: 211 DSTVAYSFAFSRAVEAALGWEIPPRAQILRGVMAELERLSHHVSDVGGICNDAAVAVLLA 270
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
RE ++ G RM PGGV +DI I + + +
Sbjct: 271 RCSLIREDILRTQAALFGHRMMMDAIVPGGVARDIDAAGATAILALLERIEIGFHRVVRA 330
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
+ + R G V+L+ + G + R G A+D R S PY Y+ + F +P
Sbjct: 331 YDQSPSIQNRTHGTGIVQLDFIRQFAAGGFVGRAGGRAFDARASFPYPPYNAVAFKVPTR 390
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
+ D R +R+ E+ ES IIRQ + +L + GP+ A+ P P
Sbjct: 391 EESDVDARIWIRIEEIAESAGIIRQLLAKL----EDGPIHAAPPPFQP------------ 434
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
G A VEA +G+ + + + ++ R + +E
Sbjct: 435 ----------------GAGAALVEAFRGDLFLAVRIEDESRIAHMHARDASWFQWPLLET 478
Query: 371 LCKGHQLADVSAILGSLDIVFGEVD 395
G+ +AD S + + VD
Sbjct: 479 AIDGNIVADFPLCNKSFNCSYSGVD 503
>gi|124515570|gb|EAY57080.1| putative hydrogenase-3 subunit (HycE) [Leptospirillum rubarum]
Length = 496
Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats.
Identities = 76/386 (19%), Positives = 127/386 (32%), Gaps = 31/386 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H ++ GE V R++ +G H+G L+ + R+
Sbjct: 141 EIPVGPVHAGIIEPGHFRFQVVGEKVLRMEERLGYTHKGIRGLLAHRPVGDVTRLSSRIS 200
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + + A+A AVE P R +R + E RI +HL ++ D G
Sbjct: 201 GDSAVAFQWAWAQAVECATQTSPPERAVWLRAILLERERIANHLGDLGALGNDAGFAFGL 260
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ +E L+ + G R PGGV D + + ++ +
Sbjct: 261 VQFGRLKEDLLRTNGQIFGHRYLMDTICPGGVAVDPGDGALSRLRSELPRLQEEIHVLKT 320
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + + R G + A WG GV+ R SG DLR P Y + +
Sbjct: 321 IYDEHGGLQDRFAGTGVLDPLLAGAWGLGGVVGRASGQLLDLRHDHPVRPYDIERVPVAL 380
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
K GD R VR E+R S+ + + +
Sbjct: 381 AKRGDVGARVQVRFQEIRHSLAFLESVLASFPPGPARRGLVCRS---------------- 424
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
P E + +E +GE ++ D P + A+E
Sbjct: 425 ---------------PKAEGFGWIEGFRGEVLAWVRLDRDGNVEDAHFHDPSWLLWPALE 469
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
G+ +AD I S ++ + D
Sbjct: 470 RAVPGNLVADFPLINKSFNLSYSGHD 495
>gi|296446946|ref|ZP_06888881.1| NADH-ubiquinone oxidoreductase chain 49kDa [Methylosinus
trichosporium OB3b]
gi|296255513|gb|EFH02605.1| NADH-ubiquinone oxidoreductase chain 49kDa [Methylosinus
trichosporium OB3b]
Length = 511
Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats.
Identities = 84/385 (21%), Positives = 145/385 (37%), Gaps = 30/385 (7%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
I GP H +GE+V R++ +G H+G E L+ T + R+
Sbjct: 156 IPVGPVHAGIIEPGHFRFTANGELVVRLEERLGYTHKGVETLMAGATLARGARLAGRVSG 215
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ + A+A AVE L +++P R +R L +E+ R+ +H ++ D
Sbjct: 216 DSTVAYAIAFAGAVESALEMKVPRRAVYLRALMAELERLANHFGDIGAICNDAAFALMNA 275
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
RE+ + + G R+ GGV D+ P + + + + + +L
Sbjct: 276 HCGVVRERFLRANRQCFGHRLLMDRVTIGGVTADVTPGAQNQLRKLVEETKALVPRLIEL 335
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
+ R V G E +G GV+ R SG A+D R++ Y Y EL F +
Sbjct: 336 FGDTTSLQDRTVGTGHASSELVSKFGCGGVVGRASGRAFDARRTPGYAPYEELSFTLGAS 395
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
GD R VR E+R S+ ++ Q ++ L G P M+
Sbjct: 396 TEGDVDARVWVRFDEVRSSLSLVEQILDILPGG--------EWKNEAVPAPGAMR----- 442
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
E A VE +G+ ++ RC++R P + +E
Sbjct: 443 -----------------EGVALVEGFRGDILAWVRIGADGMLERCQLRDPSWFQWPLLEA 485
Query: 371 LCKGHQLADVSAILGSLDIVFGEVD 395
+ + +AD + S + + D
Sbjct: 486 AIERNIVADFPLLNKSFNCSYSGTD 510
>gi|206601798|gb|EDZ38281.1| Putative NADH-ubiquinone oxidoreductase, 49 kDa subunit
[Leptospirillum sp. Group II '5-way CG']
Length = 499
Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats.
Identities = 76/386 (19%), Positives = 127/386 (32%), Gaps = 31/386 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H ++ GE V R++ +G H+G L+ + R+
Sbjct: 144 EIPVGPVHAGIIEPGHFRFQVVGEKVLRMEERLGYTHKGIRGLLAHRPVGDVTRLSSRIS 203
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + + A+A AVE P R +R + E RI +HL ++ D G
Sbjct: 204 GDSAVAFQWAWAQAVECATQTSPPERAVWLRAILLERERIANHLGDLGALGNDAGFAFGL 263
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ +E L+ + G R PGGV D + + ++ +
Sbjct: 264 VQFGRLKEDLLRTNGQIFGHRYLMDTICPGGVAVDPGDGALSRLRSELPRLQEEIHVLKT 323
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + + R G + A WG GV+ R SG DLR P Y + +
Sbjct: 324 IYDEHGGLQDRFAGTGVLDPLLAGAWGLGGVVGRASGQLLDLRHDHPVRPYDIERVPVAL 383
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
K GD R VR E+R S+ + + +
Sbjct: 384 AKRGDVGARVQVRFQEIRHSLAFLESVLASFPPGPARRGLVCRS---------------- 427
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
P E + +E +GE ++ D P + A+E
Sbjct: 428 ---------------PKAEGFGWIEGFRGEVLAWVRLDRDGNVEDAHFHDPSWLLWPALE 472
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
G+ +AD I S ++ + D
Sbjct: 473 RAVPGNLVADFPLINKSFNLSYSGHD 498
>gi|148262961|ref|YP_001229667.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Geobacter
uraniireducens Rf4]
gi|146396461|gb|ABQ25094.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Geobacter
uraniireducens Rf4]
Length = 507
Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats.
Identities = 89/388 (22%), Positives = 140/388 (36%), Gaps = 35/388 (9%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ GP H + GE V ++ +G HRG E + + V +
Sbjct: 152 EVAVGPVHAGVIEPGHFRFQCHGEEVFHLEIALGFQHRGIEAGLIGGPQTKTVYQMETGA 211
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + AY L +E L G IP +G +IR + E+ R+ +H ++ A D G L
Sbjct: 212 GDSTVAHTWAYCLILEALAGRRIPAKGGVIRGIALELERLANHTGDLGAIAGDTGYLPTS 271
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ R + GSR RPGG D + +D+ + + L + D
Sbjct: 272 SFCGRIRGDFLNMSAVLCGSRFSRGLLRPGGSGFDCSQKQADDLLQRLAAARADLFNAVD 331
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
L+ R N GTV + A +G R G A D+R+ PY Y +
Sbjct: 332 LMWTTPSVLARLENTGTVSVGTARELALTGPPARACGMAMDVRQDFPYGIYQMSQIPVVT 391
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
K GD Y R LVR +E +S+ + + + +L
Sbjct: 392 AKSGDVYARTLVRWLEAEKSLDFLEEQLRQLPSGP------------------------- 426
Query: 310 SLIHHFKLYTEGYHVPVGE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
Y G P GE A E +GE I+D R KI P + +
Sbjct: 427 --------YRNGIASPAGEHIAVALTEGWRGEVCHVAITDKAGHFSRYKIVDPSFHNWPG 478
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ +G Q++D S ++ + D
Sbjct: 479 LAMALRGQQISDFPLCNKSFNLSYCGFD 506
>gi|39995849|ref|NP_951800.1| NAD-dependent dehydrogenase subunit [Geobacter sulfurreducens PCA]
gi|39982613|gb|AAR34073.1| NAD-dependent dehydrogenase subunit [Geobacter sulfurreducens PCA]
Length = 505
Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats.
Identities = 84/392 (21%), Positives = 141/392 (35%), Gaps = 31/392 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ + GP H + GE V ++ +G +RG E+ + +
Sbjct: 144 EGDEVHEVAVGPVHAGIIEPGHFRFQCHGEEVFHLEISLGYQYRGIEQGLMGGPDPRTPF 203
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+ + + AY +A+E L G +P R + +R + E+ R+ +H ++ A DV
Sbjct: 204 RMETIAGDTTIGHMQAYCMALEALAGTRVPARAEALRGIALELERLANHTGDLGAIAGDV 263
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G L + R + GSR RPGGV D+ P +D+ D+ S
Sbjct: 264 GYLPTASFCGRIRGDFLNMSAVLCGSRFGRGLVRPGGVLFDLGPAERDDLLARLDAAQSD 323
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L ++L R N GTV + A G G R G D+R+ PY Y
Sbjct: 324 LQGAVEILWDAPSVMSRLENTGTVPADTARELGLVGPAARACGLNRDVRRDHPYGIYRMA 383
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+ HGD R VR +E +S+ IR+ + +L G + P +
Sbjct: 384 QIPVVTAHHGDVCARSTVRWLEAGKSLDFIREQLKQLPGGGCRNEAGSLQPDRI------ 437
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
A E +GE I+ + R K+ P +
Sbjct: 438 -------------------------AVALTEGWRGEVCHVAITGADGRFLRYKVTDPSFH 472
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ + +G Q++D S ++ + D
Sbjct: 473 NWPGLAMALRGEQISDFPLCNKSFNLSYCGFD 504
>gi|75762933|ref|ZP_00742737.1| NADH-quinone oxidoreductase chain D [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74489575|gb|EAO52987.1| NADH-quinone oxidoreductase chain D [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 282
Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats.
Identities = 118/309 (38%), Positives = 166/309 (53%), Gaps = 28/309 (9%)
Query: 87 LLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERA 146
++G+EIP R + +RVL E+GR SHL+ T +D+GA++P L+ F ERE ++
Sbjct: 1 MMGLEIPERAEYLRVLAMELGRFASHLVWWGTNLLDIGAVSPFLYAFREREMIINLLNEL 60
Query: 147 SGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGT 206
G+R+ Y R GGV D P +E + + L DL++GN IF R +G
Sbjct: 61 CGARLTFNYMRVGGVKWDAPDGWIEKVEEFVPYMREQLAGYHDLVSGNEIFLNRVKGVGI 120
Query: 207 VKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEM 266
E+A + SG +R +G WDLRK +PY Y DFDIP+G GD +DRY+ RM E+
Sbjct: 121 YSAEEAISYSLSGANLRCTGVNWDLRKDEPYSIYDRFDFDIPVGSVGDAWDRYVCRMQEI 180
Query: 267 RESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV 326
ES+KI+ Q V + K G V A PKI+ P
Sbjct: 181 EESLKIVEQAVQQFP---KDGAVLAKVPKII-------------------------KAPK 212
Query: 327 GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGS 386
GE + +E+P+GE G Y+ SDG +PYR K R P + +LQ + L KG +A++ ILG
Sbjct: 213 GEAFVRIESPRGEIGCYIASDGKKEPYRLKFRRPSFYNLQILPKLLKGENIANLITILGG 272
Query: 387 LDIVFGEVD 395
+DIV GEVD
Sbjct: 273 VDIVLGEVD 281
>gi|298504861|gb|ADI83584.1| Ech-hydrogenase-related complex, large subunit [Geobacter
sulfurreducens KN400]
Length = 505
Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats.
Identities = 84/392 (21%), Positives = 141/392 (35%), Gaps = 31/392 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ + GP H + GE V ++ +G +RG E+ + +
Sbjct: 144 EGDEVHEVAVGPVHAGIIEPGHFRFQCHGEEVFHLEISLGYQYRGIEQGLMGGPDPRTPF 203
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+ + + AY +A+E L G +P R + +R + E+ R+ +H ++ A DV
Sbjct: 204 RMETIAGDTTIGHMQAYCMALEALAGTRVPARAEALRGIALELERLANHTGDLGAIAGDV 263
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G L + R + GSR RPGGV D+ P +D+ D+ S
Sbjct: 264 GYLPTASFCGRIRGDFLNMSAVLCGSRFGRGLVRPGGVLFDLGPAERDDLLARLDAVQSD 323
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L ++L R N GTV + A G G R G D+R+ PY Y
Sbjct: 324 LQGAVEILWDAPSVMSRLENTGTVPADTARELGLVGPAARACGLNRDVRRDHPYGIYRMA 383
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+ HGD R VR +E +S+ IR+ + +L G + P +
Sbjct: 384 QIPVVTAHHGDVCARSTVRWLEAGKSLDFIREQLKQLPGGGCRNEAGSLQPDRI------ 437
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
A E +GE I+ + R K+ P +
Sbjct: 438 -------------------------AVALTEGWRGEVCHVAITGADGRFLRYKVTDPSFY 472
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ + +G Q++D S ++ + D
Sbjct: 473 NWPGLAMALRGEQISDFPLCNKSFNLSYCGFD 504
>gi|197124106|ref|YP_002136057.1| NADH-ubiquinone oxidoreductase chain 49kDa [Anaeromyxobacter sp. K]
gi|196173955|gb|ACG74928.1| NADH-ubiquinone oxidoreductase chain 49kDa [Anaeromyxobacter sp. K]
Length = 521
Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats.
Identities = 78/386 (20%), Positives = 140/386 (36%), Gaps = 31/386 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ GP H + GE V ++ +G HRG E+L+ +++ + +
Sbjct: 166 EVAVGPVHAGIIEPGHFRFQCHGERVFHLEIVLGYQHRGVERLLRGGPDRRSMALAESIA 225
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ AYA AVE L G+ R +R + E+ R+ +H+ ++ A DVG L
Sbjct: 226 GDTAVGHGLAYAKAVESLAGVAPTARAMSLRGIGLELERVANHVGDLGALAGDVGFLPTA 285
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ R + + G+R + PGGV D+ E + + +
Sbjct: 286 SYCGALRAEFLNAVAEICGNRFGRSLVCPGGVKHDLDAEAARALAARVRAAWEKTRRAAS 345
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
L+ + + R GTV A G G R SG D+R+ + Y +
Sbjct: 346 LMFESPSVRARFEGTGTVPTALAQALGMVGPAARASGVDRDVRRDHAFGIYRFSHVAVTT 405
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
++GD R L+R++E SV+ + + RL G
Sbjct: 406 AENGDVLARALIRLLESERSVEFVLDQLERLPGGP------------------------- 440
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
G P V + VE +GE ++D + K++ P + + +
Sbjct: 441 ------SRTVPGPLAPGALVVSMVEGWRGEIAHVAVTDAQGRLEAYKVKDPSFHNWFGLA 494
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
+ Q++D S ++ + D
Sbjct: 495 MALRDGQISDFPLCNKSFNLSYAGHD 520
>gi|116255493|ref|YP_771326.1| putative formate hydrogenlyase subunit 5 precursor [Rhizobium
leguminosarum bv. viciae 3841]
gi|115260141|emb|CAK03242.1| putative formate hydrogenlyase subunit 5 precursor [Rhizobium
leguminosarum bv. viciae 3841]
Length = 504
Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats.
Identities = 85/385 (22%), Positives = 153/385 (39%), Gaps = 31/385 (8%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
I GP H +GE V R++ +G +H+G E L+ + L+ R
Sbjct: 150 IPVGPVHAGIIEPGHFRFTANGETVVRLEERLGYVHKGIEALMVGRDLLRGAQLAGRTSG 209
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ + +A+A A E G+ +P R +R L +E+ R+ +HL ++ D
Sbjct: 210 DSTVAYAYAFAQAAEAATGLVVPPRALWLRALMAELERLANHLGDIGAICNDAAFPLMLA 269
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
RE+++ + A G R+ PGGV ++ + + D L + +L
Sbjct: 270 HCGVLRERVLRASDTAFGHRLMRDRILPGGVAVNLGDDGRAILKALLDEIHRKLPALVEL 329
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
+ R V G ++ E A +G G + R SG +D R + Y Y +L F++P+
Sbjct: 330 YDNTASLQDRTVGTGRLRCELARQYGAGGYVGRASGRGFDARDALRYPPYDQLSFEVPVL 389
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
GD R +R+ E+ +S+ ++ Q ++RL V + +
Sbjct: 390 NEGDVNARVWIRIREVEQSLSLLSQIIDRLPDGPIVRDIPFINESR-------------- 435
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
E A VE +G+ V+L ++ RC +R P + +E
Sbjct: 436 -----------------EGMALVEGFRGDVLVWLRLTRESRIERCHLRDPSWFQWPLLEA 478
Query: 371 LCKGHQLADVSAILGSLDIVFGEVD 395
+G+ +AD S + + D
Sbjct: 479 AIEGNIVADFPLCNKSFNCSYSGHD 503
>gi|86160077|ref|YP_466862.1| NADH-ubiquinone oxidoreductase subunit 49kDa [Anaeromyxobacter
dehalogenans 2CP-C]
gi|85776588|gb|ABC83425.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 521
Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats.
Identities = 81/386 (20%), Positives = 143/386 (37%), Gaps = 31/386 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ GP H + GE V ++ +G HRG E+L+ +++ + +
Sbjct: 166 EVAVGPVHAGIIEPGHFRFQCHGERVFHLEIVLGYQHRGVERLLRGGPDRRSMALAESIA 225
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ AYA A+E L G+ R +R + E+ R+ +H+ ++ A DVG L
Sbjct: 226 GDTAVGHGLAYAKAIESLAGVAPTARAMSLRGIGLELERVANHVGDLGALAGDVGFLPTA 285
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ R + + G+R + PGGV D+ E + + +
Sbjct: 286 SYCGALRAEFLNAVAEICGNRFGRSLVCPGGVKHDLDAEAARALAARVRAAWEKTRRAAS 345
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
L+ + + R GTV A G G R SG D+R+ + Y +
Sbjct: 346 LMFESPSVRARFEGTGTVPTALAQELGMVGPAARASGVDRDVRRDHAFGIYRFSHVAVTT 405
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
++GD R L+R++E SV+ + + RL G P RA
Sbjct: 406 AENGDVLARALIRLLESERSVEFVLDQLERLPGG---------------PSRAA------ 444
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
G P V + VE +GE ++D K K++ P + + +
Sbjct: 445 ----------PGPLAPGALVVSMVEGWRGEIAHVAVTDARGKLDAYKVKDPSFHNWFGLA 494
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
+ Q++D S ++ + D
Sbjct: 495 MALRDGQISDFPLCNKSFNLSYAGHD 520
>gi|167922747|ref|ZP_02509838.1| putative hydrogenase subunit [Burkholderia pseudomallei BCC215]
Length = 567
Score = 240 bits (612), Expect = 4e-61, Method: Composition-based stats.
Identities = 92/386 (23%), Positives = 141/386 (36%), Gaps = 4/386 (1%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H + GE V R++ +G HRG E+L E L R+
Sbjct: 185 EIAVGPIHAGVIEPGHFRFSVVGEKVLRLEERLGYAHRGVERLFERADALAGSRLAARIA 244
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + AY +A+E+ L I +P R +R L E R+ +HL ++ D G
Sbjct: 245 GDSTVAFAWAYCMALEQALRIRVPDRALRLRALLLERERVANHLGDLGALGNDAGFAVGL 304
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+E + +R G R PGGV +DI + I CD + +
Sbjct: 305 AHFSRLKEDWLRMQDRIFGHRYLMDAIVPGGVARDIAADDAAAIVAQCDRIEREVRAMQT 364
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + R G + + +G G+ R SG D+R Y L D+
Sbjct: 365 IYDDQSGLQDRFAGTGRLDAQAVAHFGVCGLAARASGQPRDVRADHRLAPYDALRIDVSR 424
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD R VR E ES++ IR + L ++ VP RAD + E
Sbjct: 425 DARGDVAARVAVRFAETYESMRAIRALLADLPDDGLAAEIAPGA--TVPGARADAGGTGE 482
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
+ G +E +G V L D RC P + + A+E
Sbjct: 483 GEEGGDAAFCPGDARR--RGIGWIEGWRGPVFVALELDARGAVARCHCHDPSWHNWPALE 540
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
G+ +AD I S ++ + D
Sbjct: 541 HAIIGNIVADFPLINKSFNLNYAGHD 566
>gi|76819355|ref|YP_335266.1| hydrogenase subunit [Burkholderia pseudomallei 1710b]
gi|76583828|gb|ABA53302.1| hydrogenase subunit [Burkholderia pseudomallei 1710b]
Length = 567
Score = 239 bits (611), Expect = 5e-61, Method: Composition-based stats.
Identities = 92/386 (23%), Positives = 141/386 (36%), Gaps = 4/386 (1%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H + GE V R++ +G HRG E+L E L R+
Sbjct: 185 EIAVGPIHAGVIEPGHFRFSVVGEKVLRLEERLGYAHRGVERLFERADALAGSRLAARIA 244
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + AY +A+E+ L I +P R +R L E R+ +HL ++ D G
Sbjct: 245 GDSTVAFAWAYCMALEQALRIRVPDRALRLRALLLERERVANHLGDLGALGNDAGFAVGL 304
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+E + +R G R PGGV +DI + I CD + +
Sbjct: 305 AHFSRLKEDWLRMQDRIFGHRYLMDAIVPGGVARDIAADDAAAIVAQCDRIEREVRAMQT 364
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + R G + + +G G+ R SG D+R Y L D+
Sbjct: 365 IYDDQSGLQDRFAGTGRLDAQAVAHFGVCGLAARASGQPRDVRADHRLAPYDALRIDVSR 424
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD R VR E ES++ IR + L ++ VP RAD + E
Sbjct: 425 DARGDVAARVAVRFAETYESMRAIRALLADLPDDGLAAEIAPGA--TVPGARADAGGACE 482
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
+ G +E +G V L D RC P + + A+E
Sbjct: 483 GEEGGDAAFCPGDARR--RGIGWIEGWRGPVFVALELDARGAVARCHCHDPSWHNWPALE 540
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
G+ +AD I S ++ + D
Sbjct: 541 HAIIGNIVADFPLINKSFNLNYAGHD 566
>gi|94313589|ref|YP_586798.1| hydrogenase 4 subunit G [Cupriavidus metallidurans CH34]
gi|93357441|gb|ABF11529.1| Hydrogenase-4 component G [Cupriavidus metallidurans CH34]
Length = 514
Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats.
Identities = 82/386 (21%), Positives = 135/386 (34%), Gaps = 31/386 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ GP H + GE V R++ +G H+G E+ + R+
Sbjct: 159 EVAVGPVHAGIIEPGHFRFSVVGEKVLRLEERLGYTHKGIERRFTELAPEEGYRLAGRVS 218
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + AY +A+E + +P R +R L E R+ +HL ++ D G
Sbjct: 219 GDSTVAYAWAYCMALESACRMTLPARAACLRALMLERERVANHLGDLGALGNDAGLAFGL 278
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
RE + G R+ PGGV D +E +G CD L+ +
Sbjct: 279 AQFSRLREDWQRLSGQVFGHRLMMDVVVPGGVAIDTSAPALERLGRQCDEIERELHVLRA 338
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + + R G + + A G +G+ R SG A DLR + Y L +
Sbjct: 339 IYDEHAGLQDRFRGTGQITPQLAARLGLTGLAGRASGQAVDLRCDVAWLSYETLAVRMAT 398
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD R VR E+ ES+++IR L G + + +
Sbjct: 399 QNVGDVAARVAVRFDEVIESLRLIRALCTGLPEGEIRGELRLPSVRAI------------ 446
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
VE +GE V L ++ RC P + + A+E
Sbjct: 447 -------------------GAGWVEGWRGEVLVALELGADDRVLRCHCHDPSWQNWPALE 487
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
G+ + D I S ++ + D
Sbjct: 488 HAIIGNIVPDFPLINKSFNLSYAGHD 513
>gi|254193393|ref|ZP_04899827.1| putative hydrogenase subunit [Burkholderia pseudomallei S13]
gi|169650146|gb|EDS82839.1| putative hydrogenase subunit [Burkholderia pseudomallei S13]
Length = 574
Score = 239 bits (610), Expect = 6e-61, Method: Composition-based stats.
Identities = 92/386 (23%), Positives = 141/386 (36%), Gaps = 4/386 (1%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H + GE V R++ +G HRG E+L E L R+
Sbjct: 192 EIAVGPIHAGVIEPGHFRFSVVGEKVLRLEERLGYAHRGVERLFERADALAGSRLAARIA 251
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + AY +A+E+ L I +P R +R L E R+ +HL ++ D G
Sbjct: 252 GDSTVAFAWAYCMALEQALRIRVPDRALRLRALLLERERVANHLGDLGALGNDAGFAVGL 311
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+E + +R G R PGGV +DI + I CD + +
Sbjct: 312 AHFSRLKEDWLRMQDRIFGHRYLMDAIVPGGVARDIAADDAAAIVAQCDRIEREVRAMQT 371
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + R G + + +G G+ R SG D+R Y L D+
Sbjct: 372 IYDDQSGLQDRFAGTGRLDAQAVAHFGVCGLAARASGQPRDVRADHRLAPYDALRIDVSR 431
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD R VR E ES++ IR + L ++ VP RAD + E
Sbjct: 432 DARGDVAARVAVRFAETYESMRAIRALLADLPDDGLAAEIAPGA--TVPGARADAGGACE 489
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
+ G +E +G V L D RC P + + A+E
Sbjct: 490 GEEGGDAAFCPGDARR--RGIGWIEGWRGPVFVALELDARGAVARCHCHDPSWHNWPALE 547
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
G+ +AD I S ++ + D
Sbjct: 548 HAIIGNIVADFPLINKSFNLNYAGHD 573
>gi|291334205|gb|ADD93872.1| hypothetical protein [uncultured marine bacterium
MedDCM-OCT-S08-C1340]
Length = 259
Score = 239 bits (610), Expect = 6e-61, Method: Composition-based stats.
Identities = 132/252 (52%), Positives = 170/252 (67%), Gaps = 25/252 (9%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
++FT+NFGPQHPAAHGVLRLILE+DGE++ DPHIGLLHR TEKL E+K + Q + Y D
Sbjct: 5 KNFTMNFGPQHPAAHGVLRLILEMDGEVIRSADPHIGLLHRATEKLAESKPYNQNIGYMD 64
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYV+ M EHAY LA+EKLL +E+P+R Q IRV++ EI RIL+HLL + A+D+GA+
Sbjct: 65 RLDYVSMMCNEHAYVLAIEKLLKLEVPVRAQYIRVMFDEITRILNHLLWLGAHALDIGAM 124
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP------------------- 167
+ L+ F ERE LM YE SG+RMHA Y+RPGGV +D+P
Sbjct: 125 SVFLYAFREREDLMDCYEAVSGTRMHATYYRPGGVAKDLPNVMPKFMLNKNQNLEQIETL 184
Query: 168 ------ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVM 221
L++ I + D FP +++ +LLT NRI+KQR V IG V E A GF+G M
Sbjct: 185 NYNREGTLLDFIDSFVDRFPKNVDEYENLLTENRIWKQRTVGIGVVSPERAIDLGFTGPM 244
Query: 222 IRGSGAAWDLRK 233
+RGSG +WDLRK
Sbjct: 245 LRGSGVSWDLRK 256
>gi|126456901|ref|YP_001075562.1| putative hydrogenase subunit [Burkholderia pseudomallei 1106a]
gi|242312238|ref|ZP_04811255.1| putative hydrogenase subunit [Burkholderia pseudomallei 1106b]
gi|254190229|ref|ZP_04896738.1| putative hydrogenase subunit [Burkholderia pseudomallei Pasteur
52237]
gi|254265027|ref|ZP_04955892.1| putative hydrogenase subunit [Burkholderia pseudomallei 1710a]
gi|126230669|gb|ABN94082.1| putative hydrogenase subunit [Burkholderia pseudomallei 1106a]
gi|157937906|gb|EDO93576.1| putative hydrogenase subunit [Burkholderia pseudomallei Pasteur
52237]
gi|242135477|gb|EES21880.1| putative hydrogenase subunit [Burkholderia pseudomallei 1106b]
gi|254216029|gb|EET05414.1| putative hydrogenase subunit [Burkholderia pseudomallei 1710a]
Length = 574
Score = 239 bits (610), Expect = 6e-61, Method: Composition-based stats.
Identities = 92/386 (23%), Positives = 141/386 (36%), Gaps = 4/386 (1%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H + GE V R++ +G HRG E+L E L R+
Sbjct: 192 EIAVGPIHAGVIEPGHFRFSVVGEKVLRLEERLGYAHRGVERLFERADALAGSRLAARIA 251
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + AY +A+E+ L I +P R +R L E R+ +HL ++ D G
Sbjct: 252 GDSTVAFAWAYCMALEQALRIRVPDRALRLRALLLERERVANHLGDLGALGNDAGFAVGL 311
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+E + +R G R PGGV +DI + I CD + +
Sbjct: 312 AHFSRLKEDWLRMQDRIFGHRYLMDAIVPGGVARDIAADDAAAIVAQCDRIEREVRAMQT 371
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + R G + + +G G+ R SG D+R Y L D+
Sbjct: 372 IYDDQSGLQDRFAGTGRLDAQAVAHFGVCGLAARASGQPRDVRADHRLAPYDALRIDVSR 431
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD R VR E ES++ IR + L ++ VP RAD + E
Sbjct: 432 DARGDVAARVAVRFAETYESMRAIRALLADLPDDGLAAEIAPGA--TVPGARADAGGACE 489
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
+ G +E +G V L D RC P + + A+E
Sbjct: 490 GEEGGDAAFCPGDARR--RGIGWIEGWRGPVFVALELDARGAVARCHCHDPSWHNWPALE 547
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
G+ +AD I S ++ + D
Sbjct: 548 HAIIGNIVADFPLINKSFNLNYAGHD 573
>gi|53722171|ref|YP_111156.1| formate hydrogenlyase/hydrogenase/NADH dehydrogenase subunit
[Burkholderia pseudomallei K96243]
gi|52212585|emb|CAH38611.1| putative formate hydrogenlyase/hydrogenase/NADH dehydrogenase
subunit [Burkholderia pseudomallei K96243]
Length = 551
Score = 239 bits (609), Expect = 9e-61, Method: Composition-based stats.
Identities = 92/386 (23%), Positives = 140/386 (36%), Gaps = 4/386 (1%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H + GE V R++ +G HRG E+L E L R+
Sbjct: 169 EIAVGPIHAGVIEPGHFRFSVVGEKVLRLEERLGYAHRGVERLFERADALAGSRLAARIA 228
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + AY +A+E+ L I +P R +R L E R+ +HL ++ D G
Sbjct: 229 GDSTVAFAWAYCMALEQALRIRVPDRALRLRALLLERERVANHLGDLGALGNDAGFAVGL 288
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+E + +R G R PGGV +DI I CD + +
Sbjct: 289 AHFSRLKEDWLRMQDRIFGHRYLMDAIVPGGVARDIAAGDAAAIVAQCDRIEREVRAMQT 348
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + R G + + +G G+ R SG D+R Y L D+
Sbjct: 349 IYDDQSGLQDRFAGTGRLDAQAVAHFGVCGLAARASGQPRDVRADHRLAPYDALRIDVSR 408
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD R VR E ES++ IR + L ++ VP RAD + E
Sbjct: 409 DARGDVAARVAVRFAETYESMRAIRALLADLPDDGLAAEIAPGA--TVPGARADAGGACE 466
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
+ G +E +G V L D RC P + + A+E
Sbjct: 467 GEEGGDAAFCPGDARR--RGIGWIEGWRGPVFVALELDARGAVARCHCHDPSWHNWPALE 524
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
G+ +AD I S ++ + D
Sbjct: 525 HAIIGNIVADFPLINKSFNLNYAGHD 550
>gi|89271539|emb|CAI39185.1| NADH dehydrogenase subunit 7 [Nyctotherus ovalis]
Length = 362
Score = 238 bits (608), Expect = 9e-61, Method: Composition-based stats.
Identities = 126/374 (33%), Positives = 198/374 (52%), Gaps = 16/374 (4%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
+HGVLRL++ L GE + +DP+IG LHRG+E+L++ ++ ++DRLDY + + Q H+
Sbjct: 1 SHGVLRLVITLAGEYISNIDPNIGFLHRGSERLLQERSLQACAVFYDRLDYTSVLTQTHS 60
Query: 80 YALAVE-KLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREK 138
Y + VE L + + R + E+ RIL+HLL++ T A+D+G + W FEERE+
Sbjct: 61 YCITVESMLYSNHTSLSTRRFRTVLDELSRILNHLLSIATHALDIGTMATLFWAFEERER 120
Query: 139 LMVFYERASGSRMHAAYFRPGG-VHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIF 197
+M +E SG+RMH A + PG + + + A+ +I L NR++
Sbjct: 121 IMEIFEYISGARMHVALYVPGQELQTLQTDVFILKTVLLLKNLQKAITEIYITLYNNRVW 180
Query: 198 KQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKS--QPYECYSELDFDIPIGKHGDC 255
+ R +G + G SG ++R +G DLR Y Y+ ++ I + GD
Sbjct: 181 RLRLTGVGVITARSGILCGISGPVLRSTGIPHDLRILNLCNYGVYNNINTTIYVANMGDS 240
Query: 256 YDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHF 315
+DR+L+R+ E+ S II Q + L N ++ K ++SLI F
Sbjct: 241 FDRFLIRIRELYNSSYIIYQILAELDMYNNTYVNNSIRFK------------LQSLITLF 288
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGH 375
+ G VEA KGEFG +I++ NKPYR IR+P + HLQ + L GH
Sbjct: 289 SVIGGDDRASSGIYTGFVEAGKGEFGTTIIANDTNKPYRVYIRSPAFNHLQILPLLAHGH 348
Query: 376 QLADVSAILGSLDI 389
Q+AD++ +LG+LDI
Sbjct: 349 QIADIATLLGTLDI 362
>gi|254300488|ref|ZP_04967934.1| putative hydrogenase subunit [Burkholderia pseudomallei 406e]
gi|157810214|gb|EDO87384.1| putative hydrogenase subunit [Burkholderia pseudomallei 406e]
Length = 565
Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats.
Identities = 92/386 (23%), Positives = 141/386 (36%), Gaps = 4/386 (1%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H + GE V R++ +G HRG E+L E L R+
Sbjct: 183 EIAVGPIHAGVIEPGHFRFSVVGEKVLRLEERLGYAHRGVERLFERADALAGSRLAARIA 242
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + AY +A+E+ L I +P R +R L E R+ +HL ++ D G
Sbjct: 243 GDSTVAFAWAYCMALEQALRIRVPDRALRLRALLLERERVANHLGDLGALGNDAGFAVGL 302
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+E + +R G R PGGV +DI + I CD + +
Sbjct: 303 AHFSRLKEDWLRMQDRIFGHRYLMDAIVPGGVARDIAADDAAAIVAQCDRIEREVRAMQT 362
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + R G + + +G G+ R SG D+R Y L D+
Sbjct: 363 IYDDQSGLQDRFAGTGRLDAQAVAHFGVCGLAARASGQPRDVRADHRLAPYDALRIDVSR 422
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD R VR E ES++ IR + L ++ VP RAD + E
Sbjct: 423 DARGDVAARVAVRFAETYESMRAIRALLADLPDDGLAAEIAPGA--TVPGARADAGGACE 480
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
+ G +E +G V L D RC P + + A+E
Sbjct: 481 GEEGGDAAFCPGDARR--RGIGWIEGWRGPVFVALELDARGAVARCHCHDPSWHNWPALE 538
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
G+ +AD I S ++ + D
Sbjct: 539 HAIIGNIVADFPLINKSFNLNYAGHD 564
>gi|51244895|ref|YP_064779.1| hydrogenase, component E-formate hydrogenlyase subunit 5
[Desulfotalea psychrophila LSv54]
gi|50875932|emb|CAG35772.1| related to hydrogenase, component E-formate hydrogenlyase subunit 5
[Desulfotalea psychrophila LSv54]
Length = 509
Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats.
Identities = 87/386 (22%), Positives = 149/386 (38%), Gaps = 29/386 (7%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ GP H + GE V ++ +G HRG EK++ T + + +
Sbjct: 152 EVAVGPVHAGIIEPGHFRFQCAGEEVLHLEIQLGYQHRGIEKMLPTLPQKRFPIICESIA 211
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + A+E L GI + ++IR E+ RI +H+ ++ A D P
Sbjct: 212 GDTSIGHGLSMCQAIEGLAGISVDRGAKIIRTTALELERICNHIGDLGALAGDAAFNPPA 271
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ R + + + SG+R RPGGV + E + I + +I D
Sbjct: 272 AYFGRIRGEFLNLLQVLSGNRFGKGLVRPGGVTHIMREEQRKLIREKLLEVTGEIENICD 331
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
L+ + R + GTV+ E A G G R SG A+D+R S P ECY EL +
Sbjct: 332 LIFSAHTVQARFEHTGTVQHEMAKDLGLVGYSGRASGIAYDVRNSFPTECYRELPANENR 391
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
+GD R +VR+ E+ S+K+I + +N V D +
Sbjct: 392 VTNGDVNSRGMVRVEEIMHSLKLINILIEE--SENTASEVHMQDQILA------------ 437
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
P + E +GE +++D K R KI+ P + + +
Sbjct: 438 ---------------PNAFIITLNEGWRGEISHCILTDKKGKVQRYKIKDPSFHNWTGLA 482
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
+ +++D S ++ + D
Sbjct: 483 MSLRNQEISDFPLCNKSFNLSYCGFD 508
>gi|167839775|ref|ZP_02466459.1| hydrogenase-3, subunit E [Burkholderia thailandensis MSMB43]
Length = 562
Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats.
Identities = 89/386 (23%), Positives = 140/386 (36%), Gaps = 4/386 (1%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H + GE V R++ +G HRG E+L E L R+
Sbjct: 180 EIAVGPIHAGVIEPGHFRFSVVGEKVLRLEERLGYAHRGVERLFERADALAGGRLAARIA 239
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + AY +A+E+ L + +P R +R L E R+ +HL ++ D G
Sbjct: 240 GDSTVAFTWAYCMALEQALKVRVPDRALRLRALLLERERVANHLGDLGALGNDAGFAVGL 299
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+E + +R G R PGGV +D+ + I CD + +
Sbjct: 300 AHFSRLKEDWLRLNDRIFGHRYLMDRIAPGGVERDVAADDAAAIVAQCDRIEGEVRTMQS 359
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + R G + A +G G++ R SG A D+R Y + D+
Sbjct: 360 IYDDQSGLQDRFAGTGRLTARTAAHFGVCGLVARASGQARDVRGDHRLAPYDAVPIDVVS 419
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD R VR E ES++ IR + L G V+ + P A+
Sbjct: 420 DARGDVAARVAVRFAETYESMRAIRALLAGLPGDGIAAEVALAANVPGNPADAEGAEDAG 479
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
+ VE +G V L D RC P + + A+E
Sbjct: 480 DGRGAGSAADDARR----RGIGWVEGWRGPVLVALELDARGAVARCHCHDPSWHNWPALE 535
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
G+ +AD I S ++ + D
Sbjct: 536 HAIIGNIVADFPLINKSFNLNYAGHD 561
>gi|115522981|ref|YP_779892.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Rhodopseudomonas
palustris BisA53]
gi|115516928|gb|ABJ04912.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Rhodopseudomonas
palustris BisA53]
Length = 502
Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats.
Identities = 87/385 (22%), Positives = 154/385 (40%), Gaps = 32/385 (8%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
I GP H +GE V R++ +G +H+G E L+ ++ ++
Sbjct: 149 IAVGPVHAGIIEPGHFRFTANGETVVRLEQRLGYVHKGIEGLMAGADLVRGAELAGKVSG 208
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ + +A+A A E L I+ P R +R L +E+ R+ +HL ++ D
Sbjct: 209 DSTVAYGYAFARAAEAALEIDAPPRAVWLRALCAELERLANHLGDIGGICNDAAFALMLA 268
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
RE ++ ++A G R+ PGGV +D+ I + ++ +L
Sbjct: 269 HCSVLRETVLRAADKAFGHRLMRGVIVPGGVARDLDDTGKGTIRQAVKTIRQRFPELVEL 328
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
+ R V G + A + G + RGSG A+D R+ Y Y L F++P+
Sbjct: 329 YDETASLQDRTVATGNLSAVLAEQYAVGGYVGRGSGRAFDTRRKLAYPPYDRLRFEVPVL 388
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
GD R +R+ E+ +S+ +I Q + L + + P+ PP+ +
Sbjct: 389 TEGDVNARVWIRIREVEQSLSLIDQLLADLPKSDWLAPL--------PPRAEAV------ 434
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
E A VE +G+ V+L + RC +R P + +E
Sbjct: 435 -----------------EGMAVVEGFRGDVLVWLRL-AAGRIERCHLRDPSWFQWPLLEA 476
Query: 371 LCKGHQLADVSAILGSLDIVFGEVD 395
+G+ +AD S + + VD
Sbjct: 477 AIEGNIVADFPICNKSFNCSYSGVD 501
>gi|242016266|ref|XP_002428750.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, putative [Pediculus
humanus corporis]
gi|212513435|gb|EEB16012.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, putative [Pediculus
humanus corporis]
Length = 369
Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats.
Identities = 131/217 (60%), Positives = 164/217 (75%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ ++ +NFGPQHPAAHGVLRLILEL GE V + DPHIGLLHRGTEKLIE KT+ QA+P
Sbjct: 82 TEIQNVVLNFGPQHPAAHGVLRLILELRGERVAKCDPHIGLLHRGTEKLIEYKTYTQALP 141
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
YFDRLDYV+ M E Y+LAVEKLL IE+P+R + IR +++E+ RIL+HL+ + T +DV
Sbjct: 142 YFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYIRTMFAELTRILNHLMGIGTHILDV 201
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GALTP W FEEREKLM FYER SG+RMHAAY RPGGV QD+P L++DI + F S
Sbjct: 202 GALTPFFWFFEEREKLMEFYERVSGARMHAAYIRPGGVSQDLPLGLMDDIHQFLTKFGSI 261
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGV 220
L+D+ D+LT NRI+ R NIG + EDA +G++
Sbjct: 262 LDDVDDVLTNNRIWVDRTQNIGVISAEDALNYGYTVP 298
Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats.
Identities = 53/76 (69%), Positives = 64/76 (84%)
Query: 321 GYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADV 380
GY VP G Y A+EAPKGEFGVYL+SDG +KPYRCKI+APG+AHL A++ + KG LAD+
Sbjct: 294 GYTVPPGATYTAIEAPKGEFGVYLVSDGSSKPYRCKIKAPGFAHLAALDKIGKGLFLADI 353
Query: 381 SAILGSLDIVFGEVDR 396
AI+G+LDIVFGEVDR
Sbjct: 354 VAIIGTLDIVFGEVDR 369
>gi|323139191|ref|ZP_08074247.1| NADH-ubiquinone oxidoreductase chain 49kDa [Methylocystis sp. ATCC
49242]
gi|322395574|gb|EFX98119.1| NADH-ubiquinone oxidoreductase chain 49kDa [Methylocystis sp. ATCC
49242]
Length = 505
Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats.
Identities = 92/385 (23%), Positives = 153/385 (39%), Gaps = 31/385 (8%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
I GP H +GE+V R++ +G +H+G ++L+ + +A R+
Sbjct: 151 IPVGPVHAGIIEPGHFRFSANGEVVVRLEERLGFVHKGVDQLMAGASIDRAARLAARVSG 210
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ + A+A AVE LGIE P R +R L +E+ R+ +H+ ++ D
Sbjct: 211 DSTVAYSLAFAQAVEAALGIEPPPRAIYLRALMAELERLANHIGDIGAICNDASFSLMHA 270
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
REK++ + G R+ PGG+ D+ + V + DS SAL + +
Sbjct: 271 HCGVVREKVLRASKTCFGHRLMMDRIAPGGIVTDLAEDGVTSLRVLIDSISSALPQLITV 330
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
+ R V+ G + A + G + R SG ++D RK+ Y Y L F+
Sbjct: 331 YGDTTSLQDRTVSTGVLSNNLAAQYACGGFVGRASGRSFDARKAIGYAPYPALSFETGAS 390
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
GD R VR E++ S++II Q +++L V SD I
Sbjct: 391 TDGDVDARVWVRFDEVKASLQIIEQILDQLPSGPINVNVGPSDDSIC------------- 437
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
E A VE +G+ ++ G R +R P + +E
Sbjct: 438 -----------------EGAALVEGFRGDILAWVRISG-GVVERSHLRDPSWFQWPLLEA 479
Query: 371 LCKGHQLADVSAILGSLDIVFGEVD 395
KG+ +AD S + + D
Sbjct: 480 AIKGNIVADFPLCNKSFNCSYSGHD 504
>gi|270308817|ref|YP_003330875.1| hydrogenase, HycE subunit [Dehalococcoides sp. VS]
gi|270154709|gb|ACZ62547.1| hydrogenase, HycE subunit [Dehalococcoides sp. VS]
Length = 526
Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats.
Identities = 97/387 (25%), Positives = 149/387 (38%), Gaps = 34/387 (8%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
+ + GP H GE + ++ + HRG EKL K + + +
Sbjct: 173 YEVGVGPVHAGIIEPGHFRFSAIGEPILNLEVRLFYTHRGLEKLAMGKDIDFGLKIAESV 232
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+AY+ AVE + I P R + +R++ E+ R+ SHL +++ DV
Sbjct: 233 SGDESAANAYAYSAAVEHISSIRPPRRAEQLRLILLEMERLYSHLSDLSGMLTDVAYPVG 292
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
RE LM + +R SGSR PGG+ +DIP +V ++ + F N
Sbjct: 293 AAALMALREDLMRWNKRLSGSRFLKGMITPGGLLRDIPTGIVNELVDYLRVFEVRFNQQV 352
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
+ R G + GV R SGA D R +QPY Y EL F+ P
Sbjct: 353 EKALAKTSVVDRFETTGIIDNRLLVPLNIIGVAARASGADIDTRLNQPYGLYPELMFEPP 412
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
+ GD R+ VR+ E++ S+ +IRQ +RL
Sbjct: 413 VLPEGDVMARFKVRVSEVQTSLGLIRQTASRLSAGE------------------------ 448
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
Y G VE+P+G+ +L K R K+R Y + QA+
Sbjct: 449 ---------YIVQLKPQNGYSLVLVESPRGQSLHWLWLR-DGKIERYKVRTASYCNWQAI 498
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVD 395
E G + D I SL++ + D
Sbjct: 499 EHAVLGDIIPDFPLINKSLNLSYAGTD 525
>gi|332088690|gb|EGI93803.1| formate hydrogenlyase subunit 5 [Shigella dysenteriae 155-74]
Length = 483
Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats.
Identities = 81/339 (23%), Positives = 136/339 (40%), Gaps = 32/339 (9%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ + +
Sbjct: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 355
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+ Y L
Sbjct: 356 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
++ + D R VR+ E+ ++ + ++ L GP+ +P + A
Sbjct: 416 PMEVHSEQGCDVISRLKVRINEVYTALNM----IDYGLDNLPGGPLMVEGFTYIPHRFAL 471
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGV 342
EAP+G+
Sbjct: 472 ---------------------------GFAEAPRGDDIH 483
>gi|237510059|ref|ZP_04522774.1| hydrogenase-4, G subunit [Burkholderia pseudomallei MSHR346]
gi|235002264|gb|EEP51688.1| hydrogenase-4, G subunit [Burkholderia pseudomallei MSHR346]
Length = 574
Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats.
Identities = 92/386 (23%), Positives = 140/386 (36%), Gaps = 4/386 (1%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H + GE V R++ +G HRG E+L E L R+
Sbjct: 192 EIAVGPIHAGVIEPGHFRFSVVGEKVLRLEERLGYAHRGVERLFERADALAGSRLAARIA 251
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + AY +A+E+ L I +P R +R L E R+ +HL ++ D G
Sbjct: 252 GDSTVAFAWAYCMALEQALRIRVPDRALRLRALLLERERVANHLGDLGALGNDAGFAVGL 311
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+E + +R G R PGGV DI + I CD + +
Sbjct: 312 AHFSRLKEDWLRMQDRIFGHRYLMDAIVPGGVAHDIAADDAAAIVAQCDRIEREVRAMQT 371
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + R G + + +G G+ R SG D+R Y L D+
Sbjct: 372 IYDDQSGLQDRFAGTGRLDAQAVAHFGVCGLAARASGQPRDVRADHRLAPYDALRIDVSR 431
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD R VR E ES++ IR + L ++ VP RAD + E
Sbjct: 432 DARGDVAARVAVRFAETYESMRAIRALLADLPDDGLAAEIAPGAN--VPGARADAGEAGE 489
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
+ G +E +G V L D RC P + + A+E
Sbjct: 490 GEEGGDAAFCPGDARR--RGIGWIEGWRGPVFVALELDARGAVARCHCHDPSWHNWPALE 547
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
G+ +AD I S ++ + D
Sbjct: 548 HAIIGNIVADFPLINKSFNLNYAGHD 573
>gi|300820849|ref|ZP_07100999.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
119-7]
gi|300526602|gb|EFK47671.1| respiratory-chain NADH dehydrogenase, subunit [Escherichia coli MS
119-7]
Length = 326
Score = 236 bits (603), Expect = 4e-60, Method: Composition-based stats.
Identities = 84/340 (24%), Positives = 134/340 (39%), Gaps = 49/340 (14%)
Query: 58 FLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVT 117
+ + DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 3 YNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLG 62
Query: 118 TQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWC 177
VG T + F REK M E GSR GGV +DI E
Sbjct: 63 LSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLV 122
Query: 178 DSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPY 237
+ ++++ ++L +QR IG + + A DLR PY
Sbjct: 123 REMRADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPY 166
Query: 238 ECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIV 297
Y + + GD + R +VR+ E +S+ ++ ++ +
Sbjct: 167 ADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP------------- 213
Query: 298 PPKRADMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCK 356
L TEG+ P VEAP+GE + + K +R +
Sbjct: 214 -------------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWR 254
Query: 357 IRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
RA YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 255 CRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 294
>gi|209515025|ref|ZP_03263894.1| putative formate hydrogenlyase subunit [Burkholderia sp. H160]
gi|209504651|gb|EEA04638.1| putative formate hydrogenlyase subunit [Burkholderia sp. H160]
Length = 519
Score = 236 bits (603), Expect = 4e-60, Method: Composition-based stats.
Identities = 78/386 (20%), Positives = 135/386 (34%), Gaps = 31/386 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H + GE V R++ +G HRG E+L E + R+
Sbjct: 164 EIAVGPIHAGIIEPGHFRFSVVGEKVLRLEERLGYAHRGVERLFERTPASRGHRVAARIA 223
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + A+ +A+E+ G + R +R L E R+ +HL ++ D G
Sbjct: 224 GDSTVAFSWAFCMALEQANGTILSKRALYLRALLLERERVANHLGDLGALGNDAGFGFGL 283
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+E + R G R PGGV D+ P + C+ ++ +
Sbjct: 284 AQFSRLKEDWIRLNARIFGHRYLMDRIVPGGVALDVRPVDAAVLAEQCEDIEREVHVMRK 343
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + R + G + +G G+ R SG +D+R + Y ++
Sbjct: 344 VYEDQSGLQDRFLGTGKLTAAVVEHFGVRGMAARASGHTFDVRANLRPAPYDDITVKAVS 403
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD R VR E+ ES+++IR + V V+ +
Sbjct: 404 DARGDVAARVAVRFAEIDESLRLIRALLADFPDGPIVVGVTPATA--------------- 448
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
+ VE +G+ V L G+ RC P + + A+E
Sbjct: 449 ----------------PAQGVGWVEGWRGDVFVALDIAAGDVIARCHCHDPSWQNWPALE 492
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
G+ + D I S ++ + D
Sbjct: 493 HAIIGNIVPDFPLINKSFNLNYAGHD 518
>gi|217418919|ref|ZP_03450426.1| putative hydrogenase subunit [Burkholderia pseudomallei 576]
gi|217398223|gb|EEC38238.1| putative hydrogenase subunit [Burkholderia pseudomallei 576]
Length = 580
Score = 236 bits (603), Expect = 4e-60, Method: Composition-based stats.
Identities = 92/386 (23%), Positives = 141/386 (36%), Gaps = 4/386 (1%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H + GE V R++ +G HRG E+L E L R+
Sbjct: 198 EIAVGPIHAGVIEPGHFRFSVVGEKVLRLEERLGYAHRGVERLFERADALAGSRLAARIA 257
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + AY +A+E+ L I +P R +R L E R+ +HL ++ D G
Sbjct: 258 GDSTVAFAWAYCMALEQALRIRVPDRALRLRALLLERERVANHLGDLGALGNDAGFAVGL 317
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+E + +R G R PGGV +DI + I CD + +
Sbjct: 318 AHFSRLKEDWLRMQDRIFGHRYLMDAIVPGGVARDIAADDAAAIVAQCDRIEREVRAMQT 377
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + R G + + +G G+ R SG D+R Y L D+
Sbjct: 378 IYDDQSGLQDRFAGTGRLDAQAVAHFGVCGLAARASGQPRDVRADHRLAPYDALRIDVSR 437
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD R VR E ES++ IR + L ++ VP RAD + E
Sbjct: 438 DARGDVAARVAVRFAETYESMRAIRALLADLPDDGLAAEIAPGA--TVPGARADAGGAGE 495
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
+ G +E +G V L D RC P + + A+E
Sbjct: 496 GEEGGDAAFCPGDARR--RGIGWIEGWRGPVFVALELDARGAVARCHCHDPSWHNWPALE 553
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
G+ +AD I S ++ + D
Sbjct: 554 HAIIGNIVADFPLINKSFNLNYAGHD 579
>gi|167914903|ref|ZP_02501994.1| putative hydrogenase subunit [Burkholderia pseudomallei 112]
Length = 570
Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats.
Identities = 92/386 (23%), Positives = 141/386 (36%), Gaps = 4/386 (1%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H + GE V R++ +G HRG E+L E L R+
Sbjct: 188 EIAVGPIHAGVIEPGHFRFSVVGEKVLRLEERLGYAHRGVERLFERADALAGSRLAARIA 247
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + AY +A+E+ L I +P R +R L E R+ +HL ++ D G
Sbjct: 248 GDSTVAFAWAYCMALEQALRIRVPDRALRLRALLLERERVANHLGDLGALGNDAGFAVGL 307
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+E + +R G R PGGV +DI + I CD + +
Sbjct: 308 AHFSRLKEDWLRMQDRIFGHRYLMDAIVPGGVARDIAADDAAAIVAQCDRIEREVRAMQT 367
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + R G + + +G G+ R SG D+R Y L D+
Sbjct: 368 IYDDQSGLQDRFAGTGRLDAQAVAHFGVCGLAARASGQPRDVRADHRLAPYDALRIDVSR 427
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD R VR E ES++ IR + L ++ VP RAD + E
Sbjct: 428 DARGDVAARVAVRFAETYESMRAIRALLADLPDDGLAAEIAPGA--TVPGARADAGGAGE 485
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
+ G +E +G V L D RC P + + A+E
Sbjct: 486 GEEGGDAAFCPGDARR--RGIGWIEGWRGPVFVALELDARGAVARCHCHDPSWHNWPALE 543
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
G+ +AD I S ++ + D
Sbjct: 544 HAIIGNIVADFPLINKSFNLNYAGHD 569
>gi|78221592|ref|YP_383339.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Geobacter
metallireducens GS-15]
gi|78192847|gb|ABB30614.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Geobacter
metallireducens GS-15]
Length = 502
Score = 235 bits (601), Expect = 7e-60, Method: Composition-based stats.
Identities = 78/386 (20%), Positives = 134/386 (34%), Gaps = 31/386 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ GP H + GE V ++ +G HRG E+ I + + + +
Sbjct: 147 EVAVGPVHAGIIEPGHFRFQCHGEEVFSLEIALGYQHRGVEEGILKGPHPKTLFQMETIA 206
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ AYA+ +E L G R ++IR + E+ R+ +H ++ A DV L
Sbjct: 207 GDTTIGHTLAYAMVMEALGGTVPSARAEIIRAISLELERLANHTGDLGALAGDVAYLPTA 266
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ R + GSR RPGGV D+ ++ + L +
Sbjct: 267 SFCGRIRGDFLNMTAHICGSRFGRGIVRPGGVGFDVGERQAGELLDRLAAASDDLENAVG 326
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
LL + R G V E A G G R G D+R+ P+ Y + +
Sbjct: 327 LLWDTQSVMARFEGTGKVSQETAREIGLVGPAARACGIDRDVRRDTPFGIYGVSPVAVAV 386
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
++GD + R VR E S+ + + + +L V +
Sbjct: 387 EENGDVFARAHVRWREAEASLHFVAEQLRQLPAGPPVTNTATPA---------------- 430
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
P A E +GE I+DG + R K+ P + + +
Sbjct: 431 ---------------PDSVAVALTEGWRGEICHVAITDGTGRFARYKVVDPSFHNWTGLA 475
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
+ Q++D S ++ + D
Sbjct: 476 LALRNQQISDFPLCNKSFNLSYCGFD 501
>gi|126442362|ref|YP_001062609.1| putative hydrogenase subunit [Burkholderia pseudomallei 668]
gi|126221853|gb|ABN85358.1| putative hydrogenase subunit [Burkholderia pseudomallei 668]
Length = 574
Score = 235 bits (601), Expect = 7e-60, Method: Composition-based stats.
Identities = 92/386 (23%), Positives = 141/386 (36%), Gaps = 4/386 (1%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H + GE V R++ +G HRG E+L E L R+
Sbjct: 192 EIAVGPIHAGVIEPGHFRFSVVGEKVLRLEERLGYAHRGVERLFERADALAGSRLAARIA 251
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + AY +A+E+ L I +P R +R L E R+ +HL ++ D G
Sbjct: 252 GDSTVAFAWAYCMALEQALRIRVPDRALRLRALLLERERVANHLGDLGALGNDAGFAVGL 311
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+E + +R G R PGGV +DI + I CD + +
Sbjct: 312 AHFSRLKEDWLRMQDRIFGHRYLMDAIVPGGVARDIAADDAAAIVAQCDRIEREVRAMQT 371
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + R G + + +G G+ R SG D+R Y L D+
Sbjct: 372 IYDDQSGLQDRFAGTGRLDAQAVAHFGVCGLAARASGQPRDVRADHRLAPYDALRIDVSR 431
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD R VR E ES++ IR + L ++ VP RAD + E
Sbjct: 432 DARGDVAARVAVRFAETYESMRAIRALLADLPDDGLAAEIAPGAN--VPGARADAGGAGE 489
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
+ G +E +G V L D RC P + + A+E
Sbjct: 490 GEEGGDAAFCPGDARR--RGIGWIEGWRGPVFVALELDARGAVARCHCHDPSWHNWPALE 547
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
G+ +AD I S ++ + D
Sbjct: 548 HAIIGNIVADFPLINKSFNLNYAGHD 573
>gi|291615015|ref|YP_003525172.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Sideroxydans
lithotrophicus ES-1]
gi|291585127|gb|ADE12785.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Sideroxydans
lithotrophicus ES-1]
Length = 516
Score = 235 bits (600), Expect = 8e-60, Method: Composition-based stats.
Identities = 84/386 (21%), Positives = 140/386 (36%), Gaps = 30/386 (7%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H + GE V R++ +G +H+G EK E+ + Q R+
Sbjct: 160 EIPVGPVHAGIIEPGHFRFSIIGERVLRLEERLGYVHKGIEKRFESMSLQQGAKLAGRVS 219
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + AYA+A E + + P R +R L E R+ +HL ++ DV
Sbjct: 220 GDSTVAYAWAYAMAAESIAKVTPPSRALWMRALLLERERVANHLGDLGYLGNDVALAFGF 279
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ +E+++ G R PGGV + E I C + +
Sbjct: 280 AQFWILKEQVLRNNAALFGHRYLMDTIAPGGVAVTLSAEGKRVIEAECAMLEQQVRILRG 339
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + + R + G V + A G G+ R S AWD R Y +LD +
Sbjct: 340 IYDEHAGVQDRFIGTGVVTPKLAAQLGLCGLAGRASAQAWDARVQFACAPYDKLDVQMST 399
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
++GD R +VR E+ ES+++ R+ + L E
Sbjct: 400 YRNGDVASRAIVRFGELFESLRLQREILVNL------------------------IHEDE 435
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
+ KL P G VE +GE V + +D R P + + +E
Sbjct: 436 APAALAKL------PPNGFGIGMVEGWRGEVMVAIHTDAQGNLTRVHPHDPSWQNWPLLE 489
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
+ + D I S ++ + D
Sbjct: 490 HAIIDNIVPDFPLINKSFNLSYSGQD 515
>gi|256072246|ref|XP_002572447.1| NADH-ubiquinone oxidoreductase [Schistosoma mansoni]
gi|238657606|emb|CAZ28678.1| NADH-ubiquinone oxidoreductase fe-s protein 2 (ndufs2), putative
[Schistosoma mansoni]
Length = 538
Score = 235 bits (600), Expect = 9e-60, Method: Composition-based stats.
Identities = 123/226 (54%), Positives = 159/226 (70%), Gaps = 5/226 (2%)
Query: 161 VHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGV 220
+ D L+ + ISDLL N I+ R ++G V EDA GFSGV
Sbjct: 104 IRLDPHIGLLHRGTEKLIEY-KTYTQISDLLFDNPIWITRTKDVGIVSAEDALDLGFSGV 162
Query: 221 MIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRL 280
M+RGSG WDLRK+QPY+ Y ++DFD+P+G HGDCYDR++VRM EMR+S++I+ QC+N++
Sbjct: 163 MLRGSGIKWDLRKTQPYDAYEDMDFDVPVGVHGDCYDRFIVRMEEMRQSLRIMEQCLNKM 222
Query: 281 LGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEF 340
G + D KI PPKRA+MK SME+LIHHFKL++EGY VP G Y AVEAPKGEF
Sbjct: 223 ----PKGEIKVDDAKICPPKRAEMKSSMEALIHHFKLFSEGYLVPPGSTYTAVEAPKGEF 278
Query: 341 GVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGS 386
GVYL+SDG NKPYRCKI+APG+AH+ A++ LC+G L DV A++ S
Sbjct: 279 GVYLVSDGTNKPYRCKIKAPGFAHMAAIDKLCRGFMLPDVVAVIVS 324
Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats.
Identities = 42/58 (72%), Positives = 50/58 (86%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
++ +S +NFGPQHPAAHGVLRLI+ELDGE + R+DPHIGLLHRGTEKLIE KT+ Q
Sbjct: 72 QEVQSVHLNFGPQHPAAHGVLRLIMELDGEKIIRLDPHIGLLHRGTEKLIEYKTYTQI 129
>gi|325145237|gb|EGC67516.1| NADH:ubiquinone dehydrogenase iron-sulfur protein 2, precursor
[Neisseria meningitidis M01-240013]
Length = 196
Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats.
Identities = 130/198 (65%), Positives = 152/198 (76%), Gaps = 2/198 (1%)
Query: 199 QRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDR 258
QR V IG V E A GF+GVM+RGSG WD+RK+QPYE Y ++DFDIP+G +GDCYDR
Sbjct: 1 QRTVGIGVVSPERAMQKGFTGVMLRGSGVEWDVRKTQPYEVYDKMDFDIPVGVNGDCYDR 60
Query: 259 YLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLY 318
YL RM EMR+SV+II+QC L + GPV ++ K PPKR +MK ME LIHHFKL+
Sbjct: 61 YLCRMEEMRQSVRIIKQCSEWL--RVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLF 118
Query: 319 TEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLA 378
TEG HVP GE Y AVE PKGEFGVY+ISDG NKPYR KIRAPG+AHLQ M+ + KGH LA
Sbjct: 119 TEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLA 178
Query: 379 DVSAILGSLDIVFGEVDR 396
DV AI+G+ DIVFGEVDR
Sbjct: 179 DVVAIIGTQDIVFGEVDR 196
>gi|331694633|ref|YP_004330872.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Pseudonocardia
dioxanivorans CB1190]
gi|326949322|gb|AEA23019.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Pseudonocardia
dioxanivorans CB1190]
Length = 504
Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats.
Identities = 75/388 (19%), Positives = 128/388 (32%), Gaps = 38/388 (9%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
+ I GP H + GE + ++ + +HRG EKL+E + A+ R
Sbjct: 153 YEIPVGPVHAGMIEPGHFRFSVVGETILKLKARLWFVHRGLEKLVEGRCPADALEIAQRA 212
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+ A+ A+E LGI++ + +R + E+ R+ +H+ ++ DVG
Sbjct: 213 SGDTTVGHGVAFCQAIEDALGIDVGPQAHRLRAVLLELERLYNHVNDLGALCNDVGHGVL 272
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
RE+L+ ++ +G R+ PGG P+ + + +I+
Sbjct: 273 NAHAQRVRERLLRLNDQVTGHRLLRGAVVPGGAAVVALPD-----PAVLARVAADVAEIA 327
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
DL G+ + R + + A G G + R SG A D R P EL
Sbjct: 328 DLALGHSVVHDRFAGTAVLTRDQAAELGTLGYVARASGLAVDARHDHPVL-LDELPRAEY 386
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
GD R+ VR E + A +
Sbjct: 387 SCTGGDVLARFQVRREE-------------------------------IDLAVATIAALA 415
Query: 309 ESLIHHFKLYTEGYHVPVGE-VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
E L G VE +G + R KI P + + A
Sbjct: 416 ERLDGPDHRVDPRDRPGSGRSGVGIVEGWRGTITHRVELADDGTLRRLKIVDPSFFNWPA 475
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ + D + S ++ + D
Sbjct: 476 LPVALADTIVPDFPLVNKSFNLSYAGND 503
>gi|226200202|ref|ZP_03795747.1| putative hydrogenase subunit [Burkholderia pseudomallei Pakistan 9]
gi|225927710|gb|EEH23752.1| putative hydrogenase subunit [Burkholderia pseudomallei Pakistan 9]
Length = 574
Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats.
Identities = 91/386 (23%), Positives = 140/386 (36%), Gaps = 4/386 (1%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H + GE V R++ +G HRG E+L E L R+
Sbjct: 192 EIAVGPIHAGVIEPGHFRFSVVGEKVLRLEERLGYAHRGVERLFERADALAGSRLAARIA 251
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + AY +A+E+ L I +P R +R L E R+ +HL ++ D G
Sbjct: 252 GDSTVAFAWAYCMALEQALRIRVPDRALRLRALLLERERVANHLGDLGALGNDAGFAVGL 311
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+E + +R G R PGGV +DI + I CD + +
Sbjct: 312 AHFSRLKEDWLRMQDRIFGHRYLMDAIVPGGVARDIAADDAAAIVAQCDRIEREVRAMQT 371
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + R G + + +G G+ R SG D+R Y L D+
Sbjct: 372 IYDDQSGLQDRFAGTGRLDAQAVAHFGVCGLAARASGQPRDVRADHRLAPYDALRIDVSR 431
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD R VR E ES++ IR + L ++ V RAD + E
Sbjct: 432 DARGDVAARVAVRFAETYESMRAIRALLADLPDDGLAAEIAPGAN--VSGARADAGGAGE 489
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
+ G +E +G V L D RC P + + A+E
Sbjct: 490 GEEGGDAAFCPGDARR--RGIGWIEGWRGPVFVALELDARGAVARCHCHDPSWHNWPALE 547
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
G+ +AD I S ++ + D
Sbjct: 548 HAIIGNIVADFPLINKSFNLNYAGHD 573
>gi|258653159|ref|YP_003202315.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Nakamurella
multipartita DSM 44233]
gi|258556384|gb|ACV79326.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Nakamurella
multipartita DSM 44233]
Length = 506
Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats.
Identities = 80/389 (20%), Positives = 134/389 (34%), Gaps = 35/389 (8%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
+ I GP H G + GE V + + +HRG EKL + V +R+
Sbjct: 150 YEIPVGPVHAGMIGPGHFRFSVVGETVLNLKARLWFVHRGLEKLFAGRAVAAGVELAERV 209
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+ AY AVE G+ + Q IR + E+ R+ +H+ ++ A DVG
Sbjct: 210 SGDTTVGHALAYVRAVEDASGVTLDPAAQRIRAILLELERLYNHIGDIGALANDVGHGIL 269
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
RE+L+ + +G R+ GGV + P+ E + + ++
Sbjct: 270 NNHALRIRERLLRINDAVTGHRLMRGAIVVGGVRVRVLPDAGE-----LAAVAADCAEVV 324
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC--YSELDFD 246
DL G+ + + R + A G G + R SG A D R P Y +
Sbjct: 325 DLALGHSVVRDRFTGTAMLSHRQAVDLGTLGYVARASGVAVDARFDHPVPGLVYDPAERL 384
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
GD R+LVR E++ SV++I + + V S +
Sbjct: 385 STHPTDGDVASRFLVRAQEIQSSVRMI-AALAGQVDTTAPREVGGSTSSAAGVRA----- 438
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
VE +G + D + R +I P + +
Sbjct: 439 ----------------------GVGIVEGWRGTIVHRVELDADGRLTRVRIVDPSFFNWP 476
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVD 395
A+ + D S ++ + D
Sbjct: 477 ALPLAMADTIVPDFPLANKSFNLSYAGND 505
>gi|212704382|ref|ZP_03312510.1| hypothetical protein DESPIG_02437 [Desulfovibrio piger ATCC 29098]
gi|212672103|gb|EEB32586.1| hypothetical protein DESPIG_02437 [Desulfovibrio piger ATCC 29098]
Length = 520
Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats.
Identities = 86/389 (22%), Positives = 148/389 (38%), Gaps = 22/389 (5%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ GP H + GE V ++ +G HRG EK++ L+ + +
Sbjct: 150 EVAVGPVHAGIIEPGHFRFQCYGENVLNLEISLGFQHRGVEKMLAGGPHLRDAALMECVA 209
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ AY++ +E+L G+ +P+R QL+R + E R+ +H ++ A D G L
Sbjct: 210 GDTSVGHCTAYSVVLERLAGVSVPLRAQLLRRMGLEFERLANHTGDLGAIAGDTGFLPTS 269
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
W R + G+R PGGV+ D+ P + + + D
Sbjct: 270 SWNGRIRGDFLNMTAEICGNRFGRGLVCPGGVNWDLDPAACRGLLDRLRAGWRDVKGAVD 329
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
++ + R G V L A +G GV R G D R+ P D DI
Sbjct: 330 VMFASPSVLDRLTGTGCVSLRTAEDFGMVGVAARACGLPRDARRHAPLSRLPLEDTDIRT 389
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIR---QCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ GD R VR +E+ +SV+++ Q + RL + K+ + P +
Sbjct: 390 AQGGDVLGRATVRRLEVADSVRLVEADLQHLARLGEEEKLREGESDAALWRAPMPEALPG 449
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
M + A VE +GE ++D + KI P + +
Sbjct: 450 GMLA-------------------VAQVEGWRGELCHVAVTDAEGRFGVYKIYDPSWHNWS 490
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+E +G Q++D S ++ + D
Sbjct: 491 GLEMALRGEQISDFPLCNKSFNLSYCGHD 519
>gi|283853522|ref|ZP_06370763.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Desulfovibrio sp.
FW1012B]
gi|283571103|gb|EFC19122.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Desulfovibrio sp.
FW1012B]
Length = 494
Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats.
Identities = 83/386 (21%), Positives = 137/386 (35%), Gaps = 30/386 (7%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ GP H + GE V ++ +G HRG E ++ + V + +
Sbjct: 138 EVAVGPVHAGIIEPGHFRFQCFGEEVFHLEISLGFQHRGIEAMLAGGPDPRTVHFMETAA 197
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ A+A +E L G P RG+ I E+ R+ +H ++ A DVG L
Sbjct: 198 GDTSIGHSLAHAAVIEALSGRTAPPRGRAIGRAALELERLANHTGDLGALAGDVGFLPTL 257
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ R + G+R RPGG D+ L+ + ++ A ++
Sbjct: 258 SYCGRIRGDFLNMTALLCGNRFGRGLVRPGGTAFDVDTGLLRVLAGRLEAARRAAFGAAE 317
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
LL + R G + E A G G R G A D R++ P D + +
Sbjct: 318 LLFASSTVLARFEGTGKLTAEKALDLGLVGPPARACGLARDARRTFPQPGAGARDIALSL 377
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD Y R LVR +EM S+ ++ LL GP P +PP R
Sbjct: 378 HDFGDVYARGLVRRLEMEASLDF----LDGLLADLPDGPTRELLPGRLPPGRL------- 426
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
+E +GE ++ + KI P + + +
Sbjct: 427 -------------------AVGLIEGWRGEIRHVAVTGPDGRFLAYKIIDPSFHNWFGLA 467
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
+G Q++D S ++ + D
Sbjct: 468 QALRGQQISDFPLCNKSFNLSYCGHD 493
>gi|269128896|ref|YP_003302266.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Thermomonospora
curvata DSM 43183]
gi|268313854|gb|ACZ00229.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Thermomonospora
curvata DSM 43183]
Length = 486
Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats.
Identities = 76/387 (19%), Positives = 130/387 (33%), Gaps = 39/387 (10%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
+ I GP H + GE + ++ + +H+G EKL E + + +R+
Sbjct: 138 YEIPVGPVHAGLIEPGHFRFSVVGESILKLKARLWFVHKGIEKLFEGRAPEAGLELAERI 197
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+ AY AVE L + +P + IR L E+ RI +H+ ++ DV
Sbjct: 198 SGDTSVGHALAYCQAVESALEMAVPPQAARIRALLLELERIYNHVTDLGALCNDVAHGIL 257
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
RE L+ ++ +G R+ GG P+ + + +I
Sbjct: 258 NAHAGRVRESLLRINDQVTGHRLLRGGVVVGGARLRALPD-----TDALRAIGEDVAEIV 312
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
L G+ + R + + A G G + R SG D R+ + F
Sbjct: 313 ALALGHSVVLDRFAGTAVLSTQAARDLGTLGYVARASGLDVDARRD------TLEGFTPV 366
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
+ GD R+ VR E+ S+KII L
Sbjct: 367 VRTSGDVLARFQVRAEEIAASIKIITDLAGELDAA------------------------- 401
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
L H L ++ G E +G + D R K+ P + + A+
Sbjct: 402 -DLDHVAPLPSDVLGPAAG--VGIAEGWRGTIVHRVQLDAAGALARVKVVDPSFFNWPAL 458
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVD 395
G + D + S ++ + D
Sbjct: 459 PVALSGAIVPDFPLVNKSFNLSYAGND 485
>gi|221198811|ref|ZP_03571856.1| putative hydrogenase-4, G subunit [Burkholderia multivorans CGD2M]
gi|221205072|ref|ZP_03578088.1| putative hydrogenase-4, G subunit [Burkholderia multivorans CGD2]
gi|221174863|gb|EEE07294.1| putative hydrogenase-4, G subunit [Burkholderia multivorans CGD2]
gi|221181262|gb|EEE13664.1| putative hydrogenase-4, G subunit [Burkholderia multivorans CGD2M]
Length = 496
Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats.
Identities = 81/386 (20%), Positives = 141/386 (36%), Gaps = 31/386 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H + GE V R++ +G +HRG E+L E R+
Sbjct: 141 EIAVGPIHAGIIEPGYFRFSVVGEKVLRLEERLGYVHRGVERLFERTAASNGHRVAGRIA 200
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + AY +A+E+ G +P R ++R + E RI +HL ++ D G
Sbjct: 201 GDSTVAFSWAYCMALEQACGTAVPPRALILRAVLLERERIANHLGDLGALGNDAGFAFGL 260
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+E + + G R PGG+ DI + + C+ A++ +
Sbjct: 261 AQFSRLKENWIRTNDGVFGHRYLMDRIVPGGLAVDIDLQDAAILAEQCERIARAVHVMRK 320
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + R + G + + +G G+ R SG +D+R + Y L
Sbjct: 321 IYEDQSGLQDRFLGTGRLNADVVAHFGVRGMAARASGQTFDVRANLRPAPYHNLAVQAAS 380
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD R VR E+ ES+++I + + L GP++ + P
Sbjct: 381 DARGDVAARVAVRFAEIDESLRLITELLANL----PEGPIATAVVPAAAPSG-------- 428
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
VE +G+ V L + G+ RC P + + A+E
Sbjct: 429 -------------------GIGWVEGWRGDVFVALETASGDAIARCHCHDPSWQNWPALE 469
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
G+ + D I S ++ + D
Sbjct: 470 HAIIGNIVPDFPLINKSFNLNYAGHD 495
>gi|167565805|ref|ZP_02358721.1| hydrogenase-3, subunit E [Burkholderia oklahomensis EO147]
Length = 540
Score = 232 bits (593), Expect = 5e-59, Method: Composition-based stats.
Identities = 85/386 (22%), Positives = 140/386 (36%), Gaps = 11/386 (2%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H + GE V R++ +G HRG E+L E L R+
Sbjct: 165 EIAVGPIHAGVIEPGHFRFSVVGEKVLRLEERLGYAHRGVERLFERADALAGSRLAARIA 224
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + AY +A+E+ + + +P R +R L E R+ +HL ++ D G
Sbjct: 225 GDSTVTFTWAYCMALEQAMKVRVPDRALRLRALLLERERVANHLGDLGALGNDAGFAVGL 284
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+E + +R G R PGGV +DI + + CD + + +
Sbjct: 285 AQFSRLKEDWLRLNDRIFGHRYLMDRIVPGGVERDIAADDAAALVAQCDRIEAEVRAMQT 344
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + R G + + A +G G+ R SG A D R Y + D+
Sbjct: 345 IYDDQSGLQDRFAGTGRLTAQTAAHFGVCGLAARASGKARDARVDHRLAPYDAVPVDVVS 404
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
+ GD R VR E ES++ IR + L G PV++ P + +
Sbjct: 405 DERGDVAARVAVRFAETYESMRAIRALLADLPGDGIAAPVASVASVANAPSGSGDAGAAG 464
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
+ +E +G V L RC P + + A+E
Sbjct: 465 RGADDARRG-----------VGWIEGWRGPVLVALELGAHGGVARCHCHDPSWHNWPALE 513
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
G+ + D I S ++ + D
Sbjct: 514 HAIIGNIVPDFPLINKSFNLNYAGHD 539
>gi|74006140|ref|XP_860220.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein
2 (predicted) isoform 3 [Canis familiaris]
Length = 178
Score = 232 bits (592), Expect = 7e-59, Method: Composition-based stats.
Identities = 117/179 (65%), Positives = 144/179 (80%), Gaps = 4/179 (2%)
Query: 218 SGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCV 277
SGVM+RGSG WDLRK+QPY+ Y ++DFD+PIG GDCYDRYL R+ EMR+S++II QC+
Sbjct: 4 SGVMLRGSGIQWDLRKTQPYDVYDQVDFDVPIGSRGDCYDRYLCRVEEMRQSLRIIEQCL 63
Query: 278 NRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPK 337
N++ G + D K+ PPKRA+MK SMESLIHHFKLYTEGY VP G Y A+EAPK
Sbjct: 64 NKM----PPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPK 119
Query: 338 GEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GEFGVYL+SDG ++PYRCKI+APG+AHL ++ + KGH LADV AI+G+ DIVFGEVDR
Sbjct: 120 GEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 178
>gi|320101918|ref|YP_004177509.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Isosphaera pallida
ATCC 43644]
gi|319749200|gb|ADV60960.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Isosphaera pallida
ATCC 43644]
Length = 508
Score = 232 bits (592), Expect = 8e-59, Method: Composition-based stats.
Identities = 78/392 (19%), Positives = 131/392 (33%), Gaps = 31/392 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ S + + GP H + GE V ++ +G HRG E+ + + +
Sbjct: 147 EGSEAHEVAVGPVHAGIIEPGHFRFQCHGEEVLHLEIALGYQHRGIERRLVNGPDKRTIV 206
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y + L + AY AVE L G+ P R +R + E+ R+ +H ++ A DV
Sbjct: 207 YMETLAGDTTIAHTTAYCQAVEALAGLTPPPRAHALRGVALELERLANHTGDLGALAGDV 266
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G L + R + GSR RPGGV D P +
Sbjct: 267 GFLPTASYCGRLRGDFLNTTAELCGSRFGRGLVRPGGVAFDADPPRATRMAERVAVAIRD 326
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
LN LL + + R G V A G G R G D+R P +
Sbjct: 327 LNGAH-LLWNSVTVQARFEGTGVVSQRAALEVGLVGPAARACGVERDVRYDFPTGIWQYT 385
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+ + + GD + R +R +E+ S + + L P
Sbjct: 386 HIPVAVLQTGDVFARAYIRALEIERSAAFVGFQLANLPEGPVRRPCELRLA--------- 436
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
P V + VE +GE +++ + K+ P +
Sbjct: 437 ---------------------PDSLVVSLVEGWRGEVCHVALTNADGRFSAYKVVDPSFH 475
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ + + Q++D S ++ + D
Sbjct: 476 NWFGLTLALRNQQISDFPLCNKSFNLSYCGHD 507
>gi|189425611|ref|YP_001952788.1| NADH-ubiquinone oxidoreductase chain 49kDa [Geobacter lovleyi SZ]
gi|189421870|gb|ACD96268.1| NADH-ubiquinone oxidoreductase chain 49kDa [Geobacter lovleyi SZ]
Length = 506
Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats.
Identities = 75/386 (19%), Positives = 127/386 (32%), Gaps = 31/386 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ GP H + GE V ++ +G HRG E+L+ Q + + +
Sbjct: 151 EVAVGPVHAGVIEPGHFRFQCHGEQVFHLEISLGYQHRGIEQLLLNGPHPQTLRQMEAIA 210
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ AY + +E L P +R + E+ R+ +H ++ A DVG L
Sbjct: 211 GDTSIGHGLAYCMVLESLSKSHPPATAHALRGIALELERLANHTGDLGAIAGDVGYLPTA 270
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ R + GSR +PGG + E++ + + L +
Sbjct: 271 SFCGRIRGDFLNMSAFICGSRFGRGLLKPGGTVFGLDQAQREELQNRLATGRAELTSAIE 330
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
LL R G V E A G G R G D+R P+ Y I
Sbjct: 331 LLWNTPSVMSRLEGTGVVSAESAVEMGLVGPAARACGLKRDVRSDYPFGIYRMAQVPIAT 390
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
HGD R VR E ++S+ + + +L + +
Sbjct: 391 AHHGDVCSRSSVRWEECQKSLDFCVEQLRQLPKGAHAAELKPLQGDQL------------ 438
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
A E +GE I+D + + KI P + + Q +
Sbjct: 439 -------------------TVALTEGWRGEICHLAITDSAGRFRQYKITDPSFHNWQGLA 479
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
+ Q++D S ++ + D
Sbjct: 480 MALRNEQISDFPLCNKSFNLSYCGFD 505
>gi|78042990|ref|YP_360377.1| [Ni/Fe] hydrogenase large subunit [Carboxydothermus
hydrogenoformans Z-2901]
gi|77995105|gb|ABB14004.1| [Ni/Fe] hydrogenase, large subunit [Carboxydothermus
hydrogenoformans Z-2901]
Length = 475
Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats.
Identities = 65/449 (14%), Positives = 130/449 (28%), Gaps = 76/449 (16%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L++ + +DG V G+L+RG E ++ + A R+ V P A
Sbjct: 13 IEGHLKIEVMVDGGKVVDAK-SSGVLYRGIETILVGRDPRDAQQITQRICGVCPTAHATA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG--------------- 124
++ GI+ P G+++R L ++ H+L+ +
Sbjct: 72 ATFNLDNAFGIQPPKNGRILRNLIFGADHLMDHILHFYHLSALDYVKGPDASPFIPRYEG 131
Query: 125 -----------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDI 173
+ + + R+K G H PGG +++ + + +
Sbjct: 132 DYRLPAAVNQKVVEHYIQALDIRKKAHEMAAIFGGKMPHTVGIVPGGSSENVDAQKIINF 191
Query: 174 GCWCDSFPSALN--DISDLLTGNRIFKQRNV---------NIGTVKLEDAWGWGFSGVMI 222
S ++ I D+LT +K + G+ ++ F I
Sbjct: 192 RSRLKELISFIDNVYIPDVLTIAEYYKDYFDIGRGCQNLMSYGSFPQKEDGSERFFKAGI 251
Query: 223 RGSG---------------AAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMR 267
+G +W + + P + +
Sbjct: 252 YINGQEQELNPEKITEHLKYSWFDDANSQKHPREGVTAPKPGKDGAYSWMKAPRYDGHPM 311
Query: 268 ESVKIIRQCVN-----RLLGKNKVGPVSASDPKIVPPKR--ADMKRSMESLIHHFKLYTE 320
E + R + R LG+ + + + R M+ + L +T
Sbjct: 312 EVGPLARMWIAGEKKIRGLGEKAFSVLGRHLARALETSRIAHAMEEWINELEPGKPTHTP 371
Query: 321 GYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFL 371
E EAP+G G ++ K + P + L +E
Sbjct: 372 FEIPKESEGMGLTEAPRGALGHWIKIK-NYKIANYQAVVPTTWNASPRDDNGVLGPIEQA 430
Query: 372 CKGHQLAD------VSAILGSLDIVFGEV 394
G + D V+ ++ + D
Sbjct: 431 LIGTPVRDPENPIEVARVVRAFDPCLACA 459
>gi|255021536|ref|ZP_05293579.1| Ni,Fe-hydrogenase III large subunit [Acidithiobacillus caldus ATCC
51756]
gi|254968924|gb|EET26443.1| Ni,Fe-hydrogenase III large subunit [Acidithiobacillus caldus ATCC
51756]
Length = 527
Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats.
Identities = 85/386 (22%), Positives = 138/386 (35%), Gaps = 32/386 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H GE + +++ +G H+G E+L + A+ R+
Sbjct: 173 EIPVGPVHAGTIEPGHFRFTCLGEQIVQLEERLGYCHKGIERLFVGQPPDAALRLAGRVS 232
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + +YA+AVE + IE+ R +R L E R+ +HL ++ D G
Sbjct: 233 GDSSVAYAWSYAMAVESVAEIELSQRALALRGLCLERERLANHLGDLGALGNDAGLAFAL 292
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+E+L+ G R + GGV D+ ++ I ++ L +
Sbjct: 293 TQLLAIKEELLRENAEIFGHRYLMDVVQLGGVAVDLDGRALQHIEQSSKAWRRRLETLDL 352
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
LL + + R V G + E A WG +G+ R SG AWDLR Y +I +
Sbjct: 353 LLQEHAGLRDRLVATGPITAERAAYWGMAGLSGRASGQAWDLRTHFAPPPYDRYPMEISL 412
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
+ GD R+ VR E+ ++ V L G + + A
Sbjct: 413 ARRGDVAARWAVRFAEVFRCLRWQENVVANLPGGSPRVALKAF----------------- 455
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
GE E +GE V L RC P ++ +E
Sbjct: 456 --------------PKDGEGLGICEGWRGEVFVALRL-EDGHIARCHPHDPSWSLWPVLE 500
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
+AD I S ++ + D
Sbjct: 501 EAVCQDIVADFPLINKSFNLSYSGQD 526
>gi|295699056|ref|YP_003606949.1| formate hydrogenlyase subunit [Burkholderia sp. CCGE1002]
gi|295438269|gb|ADG17438.1| putative formate hydrogenlyase subunit [Burkholderia sp. CCGE1002]
Length = 520
Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats.
Identities = 76/386 (19%), Positives = 135/386 (34%), Gaps = 30/386 (7%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H + GE V R++ +G +HRG E+L E R+
Sbjct: 164 EIAVGPIHAGTIEPGHFRFSVVGEKVLRLEERLGYVHRGVERLFERTPASHGHRVAARIA 223
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + A+++A+E+ G ++ R +R L E R+ +HL ++ D G
Sbjct: 224 GDSTVAFAWAFSMALEQASGTQLSKRALYLRALLLERERVANHLGDLGALGNDAGFGFGL 283
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+E + R G R PGGV D+ + + C+ ++ +
Sbjct: 284 AQFSRLKEDWIRTNARLFGHRYLMDRIVPGGVSVDVRGDDAAVLTRQCERIEREVHVMRK 343
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + R + G + +G G+ R SG +D+R + Y ++ +
Sbjct: 344 VYEDQSGLQDRFLGTGRLTPAVVEHFGVRGMAARASGRIFDVRANLRAAPYDDIAVNAIG 403
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD R VR E+ ES+++IR + L
Sbjct: 404 DARGDVAARVAVRFAEIDESLRLIRTLLTNLPDDGPAVVAMRPATA-------------- 449
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
+ VE +G+ V L G+ RC P + + A+E
Sbjct: 450 ----------------PAQGVGWVEGWRGDVFVALDLAPGDVIGRCHCHDPSWQNWPALE 493
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
G+ + D I S ++ + D
Sbjct: 494 HAIIGNIVPDFPLINKSFNLNYAGHD 519
>gi|167589518|ref|ZP_02381906.1| putative formate hydrogenlyase subunit [Burkholderia ubonensis Bu]
Length = 519
Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats.
Identities = 79/386 (20%), Positives = 137/386 (35%), Gaps = 31/386 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H + GE V R++ +G +HRG E+L E + R+
Sbjct: 164 EIAVGPIHAGIIEPGHFRFSVVGEKVLRLEERLGYVHRGVERLFERTPASRGQRVAARIA 223
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + AY +A+E+ G+ +P R +R L E R+ +HL ++ D G
Sbjct: 224 GDSTVAFSWAYCMALEQACGVVLPKRALRLRALLLERERVANHLGDLGALGNDAGFGFGL 283
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+E + R G R PGGV D+ E + C+ ++ +
Sbjct: 284 AQFSRLKEHWIRENARTFGHRYLMDRIVPGGVAVDVRAEDAAVLAAQCERIERDVHVMRK 343
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + R + G + +G G+ R SG +D+R + Y +
Sbjct: 344 IYDDQSGLQDRFLGTGRLDATVVEHFGVRGMAARASGQTFDVRANLRPAPYDDFAVVAAS 403
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD R VR E+ ES+++IR + L ++ +
Sbjct: 404 DVRGDVAARVAVRFAEIDESLRVIRALLADLPEGPAAVDMTPAAA--------------- 448
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
+ VE +G+ V L G+ RC P + + A+E
Sbjct: 449 ----------------PAQGVGWVEGWRGDVFVALELAPGDVIARCHCHDPSWQNWPALE 492
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
G+ + D I S ++ + D
Sbjct: 493 HAIIGNIVPDFPLINKSFNLNYAGHD 518
>gi|118578782|ref|YP_900032.1| NADH-ubiquinone oxidoreductase subunit 49kDa [Pelobacter
propionicus DSM 2379]
gi|118501492|gb|ABK97974.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Pelobacter propionicus
DSM 2379]
Length = 504
Score = 230 bits (588), Expect = 2e-58, Method: Composition-based stats.
Identities = 76/392 (19%), Positives = 134/392 (34%), Gaps = 31/392 (7%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ + GP H + GE V ++ +G HRG E+ + + +
Sbjct: 143 EGDEVHEVAVGPVHAGIIEPGHFRFQCHGEEVFHLEIALGFQHRGIERALIGGPSPRTMH 202
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+ + + A+ + +E L + P R + +R + E+ R+ +H ++ A DV
Sbjct: 203 QMEAVAGDTSIGHGQAFCMNMEALGAVFAPPRAEAVRGVALELERLANHTGDLGAIAGDV 262
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G L + R + GSR RPGG+ D E+ + +
Sbjct: 263 GYLPTSSFCGRIRGDFLNMTALLCGSRFGRGLLRPGGLGYDCDAEIAQSVLERLHIARRE 322
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ +LL R N G + E A G G R D+R+ P+ +
Sbjct: 323 VTQAINLLWDTPSVMARLENTGQLSAEVAREIGLVGPAARACDVNRDVRRDHPFGIFRMS 382
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+ GD Y R LVR +EM+ S+ + L G K+ P +
Sbjct: 383 QIPVVTAASGDVYGRALVRWLEMQRSLDF----IEEQLQHLPRGGFRNQPTKVAPDRC-- 436
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
A E +GE ++DG + R KI P +
Sbjct: 437 -------------------------AVALTEGWRGEICHTALTDGEGRFQRYKITDPSFH 471
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ + + Q++D S ++ + D
Sbjct: 472 NWTGLALALRNQQISDFPLCNKSFNLSYCGFD 503
>gi|147678037|ref|YP_001212252.1| Ni,Fe-hydrogenase I large subunit [Pelotomaculum thermopropionicum
SI]
gi|146274134|dbj|BAF59883.1| Ni,Fe-hydrogenase I large subunit [Pelotomaculum thermopropionicum
SI]
Length = 482
Score = 230 bits (588), Expect = 2e-58, Method: Composition-based stats.
Identities = 68/454 (14%), Positives = 127/454 (27%), Gaps = 81/454 (17%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L++ +E++ V G L RG E ++ + A Y R+ V P+
Sbjct: 13 IEGHLKIEVEVENNKVIDAK-TSGTLFRGLEIILRGRDPRDACHYVQRICGVCPIAHGLT 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG--------------- 124
L ++ G++ P G+++R L + SH+L+
Sbjct: 72 SILCLDDAFGVKPPANGRIVRNLIQGANYLQSHILHFYHLTALDYVKGPDTAPFIPRYEG 131
Query: 125 -----------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDI 173
A+ + R+K H + GGV + + PE +
Sbjct: 132 DYRLPKEVNDKAVEHYIQALTMRKKAQEMLAVFGAKMPHVTAYTAGGVTEQVTPEKIAQF 191
Query: 174 GCWCDSFPSALNDIS-------------DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGV 220
+ S ++++ D K G ++ G + +
Sbjct: 192 KNYLQEITSFIDNVYIPDVLAVAGVYGDDWFAIGTGCKNMLAYGGFRLTDEDDPDGQAQL 251
Query: 221 MIRGS---GAAWDLRKSQ-----PYECYSEL----------DFDIPIGKHGDCYDRYLVR 262
RG G + K + Y Y + P K + +
Sbjct: 252 FKRGRYTQGQYASVDKMKITEEVKYSWYEDSTTGKYPGEGATVPAPDKKGAYSWLKAPRY 311
Query: 263 MMEMRESVKIIRQCVNRLLGKNKVGPVSA-----SDPKIVPPK--RADMKRSMESLIHHF 315
E + RQ V + +G + + + M + L+
Sbjct: 312 EGLPHEVGPLARQWVGKQKDVVNLGEKAFSVLGRHFARAIEASQVAHAMAEWLNQLVPGQ 371
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------Q 366
YT G EAP+G G +++ K + P +
Sbjct: 372 PTYTPFNVPKEGAGVGLHEAPRGALGHWIVIK-DYKIENYQAVVPTTWNGGPRDDKGQPG 430
Query: 367 AMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
+E G + D + I+ S D
Sbjct: 431 PIEQALIGAPVKDPNNPIELVRIVRSFDPCIACA 464
>gi|296166646|ref|ZP_06849072.1| hydrogenase-4, G subunit [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295897981|gb|EFG77561.1| hydrogenase-4, G subunit [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length = 491
Score = 230 bits (588), Expect = 2e-58, Method: Composition-based stats.
Identities = 86/389 (22%), Positives = 132/389 (33%), Gaps = 43/389 (11%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
+ I GP H + GE V R+ + +HRG EKL E + AV +R+
Sbjct: 143 YEIPVGPVHAGLIEPGHFRFSVAGETVLRLKARLWFVHRGVEKLFEGRPPNGAVELAERV 202
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
A+ LA+E LG+E+P +R L E+ R+ +H ++ A DVG
Sbjct: 203 SGDTSAGHALAHCLAIEDALGVELPDEVHRLRALLVELERLYNHAADLGALANDVGFGIA 262
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
RE+L+ +G R+ RPG V P++ S + L +I+
Sbjct: 263 HAHTQRIRERLLRLNADVTGHRLLRGALRPGAVAVRALPDVAA-----LQSVAADLAEIT 317
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
+L N + R + +DA G G + R SG D R P L
Sbjct: 318 ELTLRNTVVYDRFAGTAVLHEDDARALGCLGYVARASGVRTDARLEHPTTA---LPVTEV 374
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
GD RY +R E S +++R
Sbjct: 375 RAAAGDVLARYTLRRDEFAASTELVRHLTE------------------------------ 404
Query: 309 ESLIHHFKLYTEGYHVP--VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
L + Y E P VE +G + D + R KI P + +
Sbjct: 405 --LHYGPTEYAETMPAPGAARSGIGIVEGWRGTIVHRVEIDA-GRISRAKIVDPSWFNWP 461
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVD 395
A+ + D S + + D
Sbjct: 462 ALPVAMADTIVPDFPLANKSFNQSYAGND 490
>gi|119943792|gb|ABM06163.1| NADH dehydrogenase subunit 7 [Harpanthus flotovianus]
Length = 226
Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats.
Identities = 150/226 (66%), Positives = 184/226 (81%)
Query: 24 LRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALA 83
LRL+LE++GE+VER +PHIGLLHRGTEKLIE KT+LQA+PYFDRLDYV+ M QEHAY LA
Sbjct: 1 LRLVLEMNGEVVERSEPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCQEHAYTLA 60
Query: 84 VEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFY 143
VEKLL +E+PIR Q IRVL+SEI R+L+HLL +TT AMDVGALTP LW FEEREKLM FY
Sbjct: 61 VEKLLNVEVPIRAQYIRVLFSEITRLLNHLLALTTHAMDVGALTPFLWAFEEREKLMEFY 120
Query: 144 ERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVN 203
ER SG+RMHAAY RPGGV QD+P L EDI + F S ++++ ++LT NRI+K+R V+
Sbjct: 121 ERVSGARMHAAYIRPGGVSQDLPMGLSEDIFLFXQQFASRIDEMEEMLTNNRIWKERLVD 180
Query: 204 IGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
IG V +A WGFSGVM+RGSG WDLRK+ PY+ Y ++ FD+P+
Sbjct: 181 IGVVTASEAMDWGFSGVMMRGSGIKWDLRKASPYDVYDKMIFDVPV 226
>gi|320355286|ref|YP_004196625.1| hydrogenase, component E-formate hydrogenlyase subunit 5
[Desulfobulbus propionicus DSM 2032]
gi|320123788|gb|ADW19334.1| hydrogenase, component E-formate hydrogenlyase subunit 5
[Desulfobulbus propionicus DSM 2032]
Length = 503
Score = 229 bits (585), Expect = 5e-58, Method: Composition-based stats.
Identities = 78/386 (20%), Positives = 141/386 (36%), Gaps = 29/386 (7%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ GP H + GE V ++ +G HRG E ++ T + + +
Sbjct: 146 EVGVGPVHAGIIEPGHFRFQCAGEEVLHLEIQLGYQHRGLEPMLTTVPRKRLPILCEAIA 205
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ A+E L G+ + + +R + E+ RI +H+ ++ + DV P
Sbjct: 206 GDTTIGHTLCCCQAIESLAGLSVEPGARTVRTIALELERIANHIGDLGALSGDVAFNPPA 265
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ R + + G+R + RPGGV Q + E + I + + D
Sbjct: 266 AYFGRIRGEFLNLLLTLCGNRFGKSLIRPGGVTQPMATEQRQIIRAKIKELRKEIIQVCD 325
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
LL R + GTV + A G G R SG +D+R+ P E Y+EL +
Sbjct: 326 LLFSAHTVLARFEDTGTVIRKVADQLGLVGYCGRASGLEYDVREFFPTERYAELPANSNR 385
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
+GD Y R +VR E+ ++ +I +
Sbjct: 386 VTNGDVYSRAMVRREEILHALGLIETLLAEQEEP-------------------------- 419
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
H + EG P V E +GE +++D R K++ P + + +
Sbjct: 420 ---HRPVCWQEGDLAPASFVVTLNEGWRGEVSHCVLTDAHGNILRYKVKDPSFHNWTGLA 476
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
+ +++D S ++ + D
Sbjct: 477 MALRNQEISDFPLCNKSFNLSYCGFD 502
>gi|261885789|ref|ZP_06009828.1| hydrogenase-4 component G [Campylobacter fetus subsp. venerealis
str. Azul-94]
Length = 478
Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats.
Identities = 75/276 (27%), Positives = 124/276 (44%), Gaps = 1/276 (0%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETK-TFLQAVPYFDRLD 69
I GP H A L DG+ + D + HRG EKL E + + Q +R+
Sbjct: 191 IPLGPLHITADEPGHFRLYCDGDTIVDADYRLFYQHRGMEKLAENRLNYNQMSYLAERVC 250
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ A AVE+ +G+EI R Q IR++ SEI R+ S+LLN+ G T
Sbjct: 251 GICGFAHSIACVEAVERGIGLEISRRAQAIRIMSSEIERMHSNLLNLGLACEVTGNYTAF 310
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ F RE + + +G R GGV +DI ++ + + L++I
Sbjct: 311 MHIFRVREYTLELAQLITGGRKTYGTIVIGGVRRDITLNEIKQSYEILEKIGTQLDEIWQ 370
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
++ ++ R IG + + A + G +RGSG D R Y Y EL+ +
Sbjct: 371 VVMEDKRQIGRWKGIGILDKQVARDFSPVGPNVRGSGFKRDTRYDHTYGFYKELELTPNV 430
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNK 285
GD R LVR + ++++++++QC++ + G
Sbjct: 431 QFDGDVLSRELVRYNDCKQALRLVKQCLDIMPGGAI 466
>gi|950561|gb|AAA74515.1| NADH dehydrogenase subunit 7 [Leishmania tarentolae]
Length = 398
Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats.
Identities = 135/388 (34%), Positives = 194/388 (50%), Gaps = 20/388 (5%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
FGPQHPAAHGVL +L L GE + +D IG LHRGTEKL E KT Q +PYFDRLDYV+
Sbjct: 27 FGPQHPAAHGVLCCLLYLSGEFITYIDVIIGYLHRGTEKLCEYKTVEQCLPYFDRLDYVS 86
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWG 132
+ EH +L E +L + IR +R+L E R + LL + MD+G+L+P LW
Sbjct: 87 VVCNEHLLSLCFEYMLRCCLAIRCAFMRLLMCEFTRCFNGLLCCSCMVMDIGSLSPMLWS 146
Query: 133 FEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLT 192
FEER+KLM F++ G RMH A+ G+ D ++ + C S L+ L
Sbjct: 147 FEERDKLMTFFDLCCGCRMHLAFMCLLGLLDDFVFGFIDFLLMLCISCLFVLDLYDLLFV 206
Query: 193 GNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKH 252
GNR+ R + + D SG + R G WD+R YE Y L FD
Sbjct: 207 GNRLLYLRLRGLAFFDIFDLCFNSISGCLSRSLGMVWDVRLYSCYELYFMLVFDYCFCYL 266
Query: 253 GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLI 312
GD +DR +R+ +MR S+ + +QC + + ++E++I
Sbjct: 267 GDAFDRLFLRLFDMRMSILLCKQCFFVGFFVFGFVCLFDYMY---------VDVTIETII 317
Query: 313 HHFKLYTEGYHVPVGEVYAAVEAPKGE----FGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
F Y+ + G +A VE PKGE R +IR + H+ +
Sbjct: 318 SLF--YSLWCCILPGCSFANVEHPKGEYSLFLCFLY-----GFISRLRIRCADFVHICLL 370
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ + +G L D+ A++G++D+VFG VDR
Sbjct: 371 DVMMRGFMLHDLVAVIGNVDVVFGSVDR 398
>gi|56477806|ref|YP_159395.1| subunit of formate hydrogenlyase-like membrane complex, related to
large subunit of hydrogenase [Aromatoleum aromaticum
EbN1]
gi|56313849|emb|CAI08494.1| subunit of formate hydrogenlyase-like membrane complex, related to
large subunit of hydrogenases [Aromatoleum aromaticum
EbN1]
Length = 551
Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats.
Identities = 84/380 (22%), Positives = 135/380 (35%), Gaps = 32/380 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H + GE V R++ G H+G E+ + R+
Sbjct: 197 EIAVGPVHAGTIEPGHFRFSVVGEKVLRLEERFGYTHKGIERRFMGMDIDEGARLAGRVS 256
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + AYA+A E G+ +P R +R L E R+ +HL ++ D
Sbjct: 257 GDSTVAYAWAYAMAAESAAGVAVPERAAWLRALLLERERVANHLGDLGALGNDAAFGFAL 316
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
RE + A G R+ RPGGV +D+ + + + + ++ D
Sbjct: 317 AQFSRLREDWLRANFEAFGHRLLMDCIRPGGVARDLDAAAAAQLRRDAVALVAEVAELKD 376
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + + R V G V E A G +G+ R SG DLR P+ Y +L
Sbjct: 377 IYDEHAGLQDRFVTTGRVAPELAARLGLTGLAGRASGQVADLRVDFPWPPYDKLAVTAST 436
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
+GD R VR E ES+++I + L PV+ D
Sbjct: 437 QFNGDVAARVAVRFDECFESLRLIDALLAALPDGPLDAPVAIRD---------------- 480
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
+E +GE V L +D + RC P + + +E
Sbjct: 481 ----------------AASGAGWIEGWRGEIFVALETDARGRIARCHCHDPSWQNWPVIE 524
Query: 370 FLCKGHQLADVSAILGSLDI 389
+ +AD I S ++
Sbjct: 525 HASIDNIVADFPLINKSFNL 544
>gi|294338743|emb|CAZ87075.1| putative NADH-ubiquinone oxidoreductase, chain 49kDa [Thiomonas sp.
3As]
Length = 508
Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats.
Identities = 93/386 (24%), Positives = 148/386 (38%), Gaps = 31/386 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ GP H + + GE + R++ +G H+G EK E T V RL
Sbjct: 153 EVAVGPVHAGVIEPGQWRFSIVGEKILRLEERLGFTHKGVEKRFEGMTLHDGVRLAARLS 212
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + AY +A E L G++ P R +R L E R+ +HL ++ A D G
Sbjct: 213 GDSAVANAWAYCMACETLAGVQPPPRALHLRALLLERERLANHLGDIGAIANDGGFGFAL 272
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+E ++ RA G+R +PGGV D+ + V + + + D
Sbjct: 273 AQFGRLKEDVLRLNARAFGARYPMDAVQPGGVGLDLDADAVAMLHNQGVLLGGEVRRLKD 332
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+L + + R G V E A G G+ R SG A DLR + + Y+ L +
Sbjct: 333 ILDQHEGLQDRFKTTGRVLPELAARLGMIGLAGRASGQALDLRTAAGFAPYAALGVEAAQ 392
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
+ GD R VR E+ S+++ + L G G V A P+ V P
Sbjct: 393 AQEGDVGARVAVRFAEVFTSLRLCGDLLASLPG----GSVRAQWPETVAP---------- 438
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
G VE +G + L +D + RC P + + A+E
Sbjct: 439 -----------------GLALGLVEGWRGPQCIALEADSQGRIARCHPHDPSWQNWPAIE 481
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
+ G + D I S ++ + D
Sbjct: 482 WAVIGDIVPDFPLINKSFNLSYSGHD 507
>gi|220904048|ref|YP_002479360.1| NAD-dependent dehydrogenase subunit [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
gi|219868347|gb|ACL48682.1| NAD-dependent dehydrogenase subunit [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 565
Score = 226 bits (577), Expect = 4e-57, Method: Composition-based stats.
Identities = 75/386 (19%), Positives = 137/386 (35%), Gaps = 3/386 (0%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ GP H + GE V ++ +G HRG E +I + + +
Sbjct: 182 EVAVGPVHAGIIEPGHFRFQCYGENVLHLEIALGYQHRGLEAMITQGPAGRRLHLLECAA 241
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + A+ + +E++ G + R QL+R + E+ R+ +H ++ A D G L
Sbjct: 242 GDSTVAHATAHCVLLERMTGQQPDERAQLLRRIGLELERLANHTGDLGAIAGDTGFLPTA 301
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
W R + G+R RPGGV D+ P D+ + D
Sbjct: 302 SWNGRIRGDFLNITASLCGNRFGRGLLRPGGVAYDLAPSECADMLARVRAAWHDARGSVD 361
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
++ + R + G V+ A G GV R G D R P +
Sbjct: 362 VMLDAVTVRNRLADTGMVEPATARELGLVGVAARACGLDVDARFHMPLSDLPCEGCAPRL 421
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD R LVR E+ +S++++ + RL + +
Sbjct: 422 EITGDVMARTLVRSRELDDSLRLLEFDLARLGALP---HTKNAATAESTVSAPATAAATN 478
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
+ + + P A VE +GE ++D + K+ P + + +
Sbjct: 479 TSGTAAEAASFDALPPDTLAVALVEGWRGEVCHVGLTDSRGRLLVYKVVDPSFHNWAGLA 538
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
+G+Q++D S ++ + D
Sbjct: 539 MALRGNQISDFPLCNKSFNLSYCGHD 564
>gi|74272679|gb|ABA01135.1| mitochondrial NADH:ubiquinone oxidoreductase 49kD subunit 7
[Chlamydomonas incerta]
Length = 277
Score = 226 bits (577), Expect = 4e-57, Method: Composition-based stats.
Identities = 129/202 (63%), Positives = 160/202 (79%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ K +FT+NFGPQHPAAHGVLRL+LE+ GEI+ R DPHIGLLHRGTEKL+E KT+LQ
Sbjct: 76 LAPAKVNNFTLNFGPQHPAAHGVLRLVLEMQGEIIMRADPHIGLLHRGTEKLLEYKTYLQ 135
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+PYFDRLDYV+ M EH+Y LA+E+LL + +P+RGQ IRVL+SEI R+L+HLL +T +
Sbjct: 136 GLPYFDRLDYVSMMCMEHSYVLAIEQLLNLSVPLRGQYIRVLFSEITRVLNHLLAITCHS 195
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTP LW FEEREKL FYER SG+RMHA YFR GGV QD+P L+ D+ W F
Sbjct: 196 MDVGALTPFLWAFEEREKLFEFYERVSGARMHAGYFRVGGVSQDLPIGLLRDVYDWARQF 255
Query: 181 PSALNDISDLLTGNRIFKQRNV 202
L+++ +LLTGNRI+K+R V
Sbjct: 256 GLRLDEMEELLTGNRIWKERTV 277
>gi|308446401|ref|XP_003087171.1| hypothetical protein CRE_22765 [Caenorhabditis remanei]
gi|308260392|gb|EFP04345.1| hypothetical protein CRE_22765 [Caenorhabditis remanei]
Length = 237
Score = 226 bits (576), Expect = 5e-57, Method: Composition-based stats.
Identities = 93/237 (39%), Positives = 132/237 (55%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
+N GP HP+AHG R+IL+LDGE V+ P IG HRG EK+ E +T+ +PY DR+
Sbjct: 1 MFLNLGPNHPSAHGAFRVILQLDGEEVKDCVPDIGYHHRGVEKMAERQTWHSFIPYTDRV 60
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
DY+ Q Y + VE+L GI +P R Q IRV+ SE+ RI +HLL + T D G +TP
Sbjct: 61 DYLGGCAQNMPYVMGVEQLAGITVPDRAQCIRVMMSELFRINNHLLYIGTAIQDAGGMTP 120
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
+ F +R+K+ E +G RMH A+FR GG D+P + I + P L +
Sbjct: 121 VFYMFADRQKIYDAIEAITGFRMHPAWFRIGGTAHDLPNNWQKLIREILEWMPKRLKEYH 180
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
N +F R N+ + A WG +G +R +G +D+RK +PY Y +L F
Sbjct: 181 TAALKNSVFVGRTRNVAQYDAKSALAWGVTGTGLRATGIDFDVRKYRPYSGYEKLRF 237
>gi|239905428|ref|YP_002952167.1| putative hydrogenase-4 component G [Desulfovibrio magneticus RS-1]
gi|239795292|dbj|BAH74281.1| putative hydrogenase-4 component G [Desulfovibrio magneticus RS-1]
Length = 494
Score = 226 bits (576), Expect = 5e-57, Method: Composition-based stats.
Identities = 78/386 (20%), Positives = 132/386 (34%), Gaps = 30/386 (7%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ GP H + GE V ++ +G HRG E + + V + + L
Sbjct: 138 EVAVGPVHAGIIEPGHFRFQCSGEDVYHLEISLGFQHRGIEARLIGGPDKRTVHFMETLA 197
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ A+A VE L +P RG+ I + E+ R+ +H ++ A DVG
Sbjct: 198 GDTTIGHSLAHAALVEALTETAVPARGRAIARIALELERLANHTGDLGAMAGDVGYQPTM 257
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ R + G+R RPGGV D+ ++ ++ + A ++
Sbjct: 258 AYCGRIRGDFLNLTGLVCGNRFGRGLVRPGGVAFDLDKPIIRELLSRLELTRRAAFGAAE 317
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
LL + R G V E A G G R G D R + P D + +
Sbjct: 318 LLFLSSTTLARFEGTGRVSAETAREIGLVGPPARACGLPRDARHAFPLPGAGPKDIPMQL 377
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
G Y R LVR +EM S+ I + GPV + ++P
Sbjct: 378 HDFGGVYARALVRRLEMEASLDFIHDAL----IGLPEGPVRQTPAGVLPGGMV------- 426
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
E +GE ++ + K+ P + + +
Sbjct: 427 -------------------AVGLTEGWRGEICHVAVTGDDGRFAAYKVVDPSFHNWFGLA 467
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
+G Q++D S ++ + D
Sbjct: 468 VALRGQQISDFPLCNKSFNLSYCGHD 493
>gi|317126121|ref|YP_004100233.1| NADH dehydrogenase subunit C [Intrasporangium calvum DSM 43043]
gi|315590209|gb|ADU49506.1| NADH dehydrogenase subunit C [Intrasporangium calvum DSM 43043]
Length = 516
Score = 225 bits (575), Expect = 6e-57, Method: Composition-based stats.
Identities = 78/389 (20%), Positives = 137/389 (35%), Gaps = 40/389 (10%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
+ I GP H + GE + ++ + +HRG EK E +T +A+P +R+
Sbjct: 165 YEIPVGPIHAGLIEPGHFRFSVVGETILKLKARLWFVHRGIEKHAEGRTVSEALPLMERV 224
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+ A++LAVE+ L +P QLIR + E+ R+ +H+ ++ DVG
Sbjct: 225 AGDTSVGHALAFSLAVEEALDWAVPAPAQLIRAVLLELERLYNHITDIGALCNDVGQGLL 284
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
RE+L+ +G R+ PGG P D + + I
Sbjct: 285 NAHALTLRERLLRLNAETTGHRLLRGAIVPGGARLQTLP-----TAAAIDHIDAEADRIV 339
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
L G+ + + R + + + A G G + R SG D R P+ + +
Sbjct: 340 TLALGHSVVRDRFTDTAVLPTDQARDLGTLGYVARASGLRIDARHDHPF-TEATTRAQLV 398
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
GD R+L+R E S +++ + + G + K+ P
Sbjct: 399 TKSEGDVMARFLMRAEEFHASALLVKDLLALVGGGDVP------LGKLSPI--------- 443
Query: 309 ESLIHHFKLYTEGYHVPVGE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
G+ VE +G + R KI P + +
Sbjct: 444 -----------------AGQTSGVGLVEGWRGTIAHRIELAPDKTIRRLKIVDPSFLNWP 486
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVD 395
A+ + D S ++ + D
Sbjct: 487 AVPVSLTDTIVPDFPLTNKSFNLSYAGND 515
>gi|89902049|ref|YP_524520.1| NADH-ubiquinone oxidoreductase subunit 49kDa [Rhodoferax
ferrireducens T118]
gi|89346786|gb|ABD70989.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Rhodoferax
ferrireducens T118]
Length = 498
Score = 225 bits (575), Expect = 7e-57, Method: Composition-based stats.
Identities = 82/387 (21%), Positives = 143/387 (36%), Gaps = 28/387 (7%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ GP H + GE V ++ +G HRG E L+ + Q P + +
Sbjct: 138 EVGVGPIHASVIEPGHFRFMCLGENVHHLEIQLGYQHRGVEGLLLRRPVWQLTPLVESIC 197
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + Y A+E + + Q R + E+ RI HL + A D+ L
Sbjct: 198 GDSAVAYAWGYGAALELMSNQPVAPAIQASRAIALEMERIAMHLATLGGMATDIAFLQGG 257
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
R ++ +R G+R + RPG + + L +D+ +F I+
Sbjct: 258 ATYGRLRTAIINASQRVCGNRFGRGWIRPGQA-KPLSEALQQDLTRTLRAFAPDFTQINQ 316
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
L+ R + R GTV + A G +G + R SG A D R P Y +
Sbjct: 317 LMLAARSVQARLHGTGTVSQQAALDLGLTGPVARASGVALDHRTQWPGAAYGHAPLPMVT 376
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCV-NRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
GDC+ R +RM E+ S+ + Q + + L ++ G +S P +
Sbjct: 377 EPDGDCWARMRLRMREVDASLAWLLQLLGDTTLNLSQAGQAQSSTPAAL---------QA 427
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
E+L + VE +G L + + K++ P A+ +
Sbjct: 428 EALC-----------------VSLVEGTRGPVLQVLETSAKGELRHYKVQDPSTANWFGL 470
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVD 395
F + + ++D S D+ + D
Sbjct: 471 AFAMRDNAISDFPICNKSFDLSYCGND 497
>gi|321466994|gb|EFX77986.1| hypothetical protein DAPPUDRAFT_305286 [Daphnia pulex]
Length = 229
Score = 225 bits (575), Expect = 7e-57, Method: Composition-based stats.
Identities = 120/220 (54%), Positives = 161/220 (73%), Gaps = 5/220 (2%)
Query: 177 CDSFPSALNDISDLLTGNRI-FKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQ 235
F + ++ + +KQR V+IG V EDA +GFSGVM+RGSG WDLRK+Q
Sbjct: 13 LTPFFWLFEEREKIMEFSECIWKQRTVDIGIVSAEDALHYGFSGVMLRGSGIKWDLRKTQ 72
Query: 236 PYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPK 295
PY+ Y ++FD+P+G GD YDRYL R+ EMRES+ II QC+N++ G V D K
Sbjct: 73 PYDAYDLVEFDVPVGLKGDYYDRYLCRVEEMRESLHIIDQCLNKMPA----GEVRVDDAK 128
Query: 296 IVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRC 355
I+ PKR++M+ SME+LIHHFKL+T+GY+VP G Y AVE PKGEFGVYL+SDG ++PYRC
Sbjct: 129 IMAPKRSEMETSMEALIHHFKLFTQGYNVPPGATYTAVENPKGEFGVYLVSDGSSRPYRC 188
Query: 356 KIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
KI+APG+AHL A+E + + H LAD+ AI+G+LD++FGE+D
Sbjct: 189 KIKAPGFAHLAALEKVGRNHMLADIVAIIGTLDVIFGEID 228
>gi|255525492|ref|ZP_05392429.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Clostridium
carboxidivorans P7]
gi|296188575|ref|ZP_06856963.1| respiratory-chain NADH dehydrogenase, 49 Kd subunit [Clostridium
carboxidivorans P7]
gi|255510857|gb|EET87160.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Clostridium
carboxidivorans P7]
gi|296046839|gb|EFG86285.1| respiratory-chain NADH dehydrogenase, 49 Kd subunit [Clostridium
carboxidivorans P7]
Length = 526
Score = 225 bits (574), Expect = 8e-57, Method: Composition-based stats.
Identities = 96/387 (24%), Positives = 161/387 (41%), Gaps = 30/387 (7%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
+ I+ GP H + GE +E ++ + HRG EK+ E + F+R+
Sbjct: 169 YQISVGPVHAGIIEPGHFRFSVIGEAIENLELRLNYKHRGIEKICENVDASKLNLVFERM 228
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+ +YAL VEKLL + P + +RV+ E+ RI + L +++ +D+G P
Sbjct: 229 ACESSAAYAESYALLVEKLLSYDTPQEIKALRVVLLELERIYNFLGDISGICVDIGFSYP 288
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
E++ ER +GSR P G++ D E +EDI + ++ I
Sbjct: 289 AKRFGAFGEQIHKLCERITGSRFMRNVIIPCGINIDFTKEHIEDIKKTLNGMKKRMDKII 348
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
++ + F R N G V+ + A +G+ R SG +D+RKS PYE Y L +
Sbjct: 349 EITLDSVSFLDRVENTGIVRNKTAKKLYMTGITGRASGINYDVRKSFPYEIYGILKKNNN 408
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
+ G ++RY +++ E+ ++ I ++ + + +K
Sbjct: 409 TLEIGGVFERYKLKIKEIYDAYNFIFASLDFI-------------------NKDILKTKT 449
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
E FKL E E AAVE KGE VY NK R + P + +
Sbjct: 450 E-----FKLVEET------EALAAVETVKGELIVYGKVGKDNKFNRIYFKTPSVTNWNGL 498
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVD 395
+ G + D S ++ + E D
Sbjct: 499 TYAVLGEIVPDFPLCNKSFNMSYSEND 525
>gi|221045342|dbj|BAH14348.1| unnamed protein product [Homo sapiens]
Length = 231
Score = 225 bits (574), Expect = 9e-57, Method: Composition-based stats.
Identities = 142/231 (61%), Positives = 182/231 (78%)
Query: 28 LELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKL 87
+EL GE+V + DPHIGLLHRGTEKLIE KT+LQA+PYFDRLDYV+ M E AY+LAVEKL
Sbjct: 1 MELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKL 60
Query: 88 LGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERAS 147
L I P R Q IRVL+ EI R+L+H++ VTT A+D+GA+TP W FEEREK+ FYER S
Sbjct: 61 LNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVS 120
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTV 207
G+RMHAAY RPGGVHQD+P L++DI + +F L+++ +LLT NRI++ R ++IG V
Sbjct: 121 GARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIGVV 180
Query: 208 KLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDR 258
E+A +GFSGVM+RGSG WDLRK+QPY+ Y +++FD+P+G GDCYDR
Sbjct: 181 TAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDR 231
>gi|114775565|ref|ZP_01451133.1| hydrogenase subunit [Mariprofundus ferrooxydans PV-1]
gi|114553676|gb|EAU56057.1| hydrogenase subunit [Mariprofundus ferrooxydans PV-1]
Length = 532
Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats.
Identities = 80/387 (20%), Positives = 147/387 (37%), Gaps = 31/387 (8%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
+ I GP H GE + ++ +G +H+G E+ +++K+ + + R+
Sbjct: 176 YEIPVGPVHAGIIEPGHFRFLAVGEHILNMEERLGYVHKGIERAMQSKSAEEGLKVASRI 235
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+ + A+A A E I++P R IR + E RI +H+ ++ D
Sbjct: 236 SGDSTVAHAWAFAQACEYAGQIDVPRRASFIRAILCERERIANHIGDIGAVCNDAAFAFM 295
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
RE + + G R+ PGGV D+ + + + + + +
Sbjct: 296 LHQMHRLREDMARLHLELFGHRLLMNTLIPGGVLVDLGERAIGLLREQTLAIANEVEHLR 355
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
+ + + R + G V +EDA G G + R SG D R + Y Y EL+ ++P
Sbjct: 356 AIYADHPSIQGRVIGSGMVPVEDAQDIGLLGYVGRASGHYPDERIEEAYAPYDELEVNVP 415
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
GK GD R VR E+ ES ++I + + ++ V +P +
Sbjct: 416 QGKLGDVATRVWVRFEEIAESSRLISELLEKMPEGPIVANWLPPEPGVS----------- 464
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
+AA+E +GE ++ G + RC +R P + +
Sbjct: 465 --------------------GFAAIEGWRGEIAAWVRFGEGGQIDRCFVRDPSVINWLGL 504
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVD 395
E + + D S + + D
Sbjct: 505 ELAVREVPVPDFPLNNKSFNCSYSGND 531
>gi|91978314|ref|YP_570973.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Rhodopseudomonas
palustris BisB5]
gi|91684770|gb|ABE41072.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Rhodopseudomonas
palustris BisB5]
Length = 503
Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats.
Identities = 89/385 (23%), Positives = 152/385 (39%), Gaps = 32/385 (8%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
+ GP H + GE V R++ +G +H+G + L+ +A R+
Sbjct: 150 VAVGPVHAGIIEPGHFRFTVSGETVVRLEQRLGYVHKGIDGLLAGAELSRAARLAGRVSG 209
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ + A+A AVE I P R +R L +E+ R+ +HL ++ D
Sbjct: 210 DSTVAYALAFARAVEAAAEIAAPARAVWLRALVAELERLANHLGDIGAICNDAAFALMLA 269
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
RE ++ + A G R+ PGGV +D+ I + + L ++ +L
Sbjct: 270 QFGVLRENVLRAADAAFGHRLMRDVVTPGGVTRDLDATGTAAIRKALAAVHNKLPELIEL 329
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
+ R V G +K A + G + R SG A+D R++ Y Y EL F+IP+
Sbjct: 330 YDRTASLQDRTVGTGILKASLADQYAAGGFVGRASGRAFDARRTLGYAPYDELRFEIPVR 389
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
GD R +R+ E+ +S+ ++ Q ++RL G +
Sbjct: 390 TEGDVDARIWIRISEVEQSLALVDQILDRLPGGDIC------------------------ 425
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
V E A VE +G+ V+L RC +R P + +E
Sbjct: 426 -------VAPALPEQVCEGLALVEGFRGDILVWLRLR-DGVVERCHLRDPSWFQWPLLEA 477
Query: 371 LCKGHQLADVSAILGSLDIVFGEVD 395
+ +G+ +AD S + + VD
Sbjct: 478 VIEGNIIADFPLCNKSFNCSYSGVD 502
>gi|225164840|ref|ZP_03727064.1| NADH-ubiquinone oxidoreductase chain 49kDa [Opitutaceae bacterium
TAV2]
gi|224800550|gb|EEG18922.1| NADH-ubiquinone oxidoreductase chain 49kDa [Opitutaceae bacterium
TAV2]
Length = 511
Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats.
Identities = 78/389 (20%), Positives = 133/389 (34%), Gaps = 32/389 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ GP H + GE V ++ +G HRG E+ + L + + +
Sbjct: 151 EVAVGPVHAGIIEPGHFRFQCAGEEVLHLEIALGYQHRGVEEALAGGPHLATMVQMETVA 210
Query: 70 YVAPMNQEHAYALAVEKLL---GIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
+ A+A +E L E P+R Q +R++ E+ R+ +H ++ A DV L
Sbjct: 211 GDTTIAHATAHATLLETLGTSGAGEAPLRAQWVRLIALELERLANHTGDLGALAGDVAFL 270
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
+ R + G+R RPGG D+ + + + +
Sbjct: 271 PTMSACGKIRGDFLNLTALICGNRFGRGLVRPGGCRHDLDTTRTALLAERLRAALADVEQ 330
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ L + R N+GTV A G G R G D+R P +
Sbjct: 331 AAAWLWDASAVRARFENVGTVFPRQAQETGLVGPAARACGLVRDVRYDHPAGWHRFAQAP 390
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ + GD + R VR +E++ S Q V L GP+ P
Sbjct: 391 VAVWPGGDVFARARVRWLEIQRSG----QLVLEQLEAPAEGPIRDEAPL----------- 435
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
P A VE +GE ++D + R KI P + +
Sbjct: 436 --------------PPPAPDTLAVALVEGWRGEVCHVALTDAAGRFRRYKIVDPSFHNWT 481
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ +G ++D S ++ + D
Sbjct: 482 GLALALRGQAISDFPICNKSFNLSYCGFD 510
>gi|296134787|ref|YP_003642029.1| subunit of formate hydrogenlyase-like membrane complex, large
subunit of hydrogenase-like protein [Thiomonas
intermedia K12]
gi|295794909|gb|ADG29699.1| subunit of formate hydrogenlyase-like membrane complex, large
subunit of hydrogenase-like protein [Thiomonas
intermedia K12]
Length = 508
Score = 223 bits (569), Expect = 4e-56, Method: Composition-based stats.
Identities = 91/386 (23%), Positives = 146/386 (37%), Gaps = 31/386 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ GP H + + GE + R++ G H+G EK E T V RL
Sbjct: 153 EVAVGPVHAGVIEPGQWRFSIVGEKILRLEERFGFTHKGVEKRFEGMTLHDGVRLAARLS 212
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + +Y +A E L G++ P R +R L E R+ +HL ++ A D G
Sbjct: 213 GDSAVANAWSYCMACETLAGVQPPPRALHLRALLLERERLANHLGDIGAIANDGGFGFAL 272
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+E ++ RA G+R +PGGV D+ + V + + + D
Sbjct: 273 AQFGRLKEDVLRLNARAFGARYPMDAVQPGGVGLDLDADAVAMLHNQGVLLGGEVRRLKD 332
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+L + + R G V E A G G+ R SG A DLR + + Y+ L +
Sbjct: 333 ILDQHEGLQDRFKTTGRVLPELAARLGMVGLAGRASGQALDLRTAAGFAPYAALGVEAAQ 392
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
+ GD R VR E+ S+++ + L G G V A P+ V P
Sbjct: 393 AQEGDVGARVAVRFAEVFTSLRLCGDLLASLPG----GNVRAEWPETVAP---------- 438
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
G VE +G + L +D + RC P + + +E
Sbjct: 439 -----------------GLALGLVEGWRGPQCIALEADSQGRIARCHPHDPSWQNWPTIE 481
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
+ G + D I S ++ + D
Sbjct: 482 WAVIGDIVPDFPLINKSFNLSYSGHD 507
>gi|1171858|sp|P21301|NDUS2_TRYBB RecName: Full=NADH-ubiquinone oxidoreductase 49 kDa subunit
homolog; AltName: Full=NADH dehydrogenase subunit 7
homolog
Length = 386
Score = 222 bits (565), Expect = 9e-56, Method: Composition-based stats.
Identities = 132/387 (34%), Positives = 191/387 (49%), Gaps = 18/387 (4%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
FGPQHPAAHGVL +L GE + +D IG LHRGTEKL E K+ Q +PYFDRLDYV+
Sbjct: 15 FGPQHPAAHGVLCCLLYFCGEFIVYIDCIIGYLHRGTEKLCEYKSVEQCLPYFDRLDYVS 74
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWG 132
EH +L E +L + +R +R+L E R + LL ++ +D+G L+P LW
Sbjct: 75 VCCNEHLLSLCFEYMLRCCLSLRCAFMRLLIVEFTRSFNGLLCISCMVLDLGCLSPLLWS 134
Query: 133 FEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLT 192
FEER+KLM F++ G RMH A+ G+ D V+ + S ++ L
Sbjct: 135 FEERDKLMTFFDLCCGCRMHLAFMVLLGILDDFVFGFVDFLLLLIISCLFVMDCYDLLFV 194
Query: 193 GNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKH 252
GNR+F R + L D SGV+ R G WD R YE Y +D
Sbjct: 195 GNRLFYLRLRGLSFFDLYDLVFNSLSGVLSRSLGMVWDCRLFSCYELYFMFCYDYCFCFI 254
Query: 253 GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLI 312
GD +DR +R+ +MR S+ I +QC + + ++E++I
Sbjct: 255 GDAFDRLFLRLFDMRMSLLICKQCFFVGFFVFGFVCLFDYLYCDI---------TIETII 305
Query: 313 HHFKLYTEGYHVPVGEVYAAVEAPKGE---FGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
F Y+ G +A VE PKGE + + R ++R + H+ ++
Sbjct: 306 MLF--YSLWCCCLPGISFACVEHPKGEYCLLLCFCV----GLCSRLRLRCADFLHICLLD 359
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVDR 396
+G L D+ A+LG++D+VFG VDR
Sbjct: 360 VCLRGFLLHDLVAVLGNIDVVFGSVDR 386
>gi|167572899|ref|ZP_02365773.1| hydrogenase-3, subunit E [Burkholderia oklahomensis C6786]
Length = 546
Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats.
Identities = 85/386 (22%), Positives = 139/386 (36%), Gaps = 5/386 (1%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H + GE V R++ +G HRG E+L E L R+
Sbjct: 165 EIAVGPIHAGVIEPGHFRFSVVGEKVLRLEERLGYAHRGVERLFERADALAGSRLAARIA 224
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + AY +A+E+ + + +P R +R L E R+ +HL ++ D G
Sbjct: 225 GDSTVAFTWAYCMALEQAMKVRVPDRALRLRALLLERERVANHLGDLGALGNDAGFAVGL 284
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+E + +R G R PGGV +DI + + CD + + +
Sbjct: 285 AQFSRLKEDWLRLNDRIFGHRYLMDRIVPGGVERDIAADDAAALVAQCDRIEAEVRAMQT 344
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + R G + + A +G G+ R SG A D R Y + D+
Sbjct: 345 IYDDQSGLQDRFAGTGRLTAQTAAHFGVCGLAARASGKARDARVDHRLAPYDVVPVDVVS 404
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD R VR E ES++ IR + L G PV++ A+
Sbjct: 405 DPRGDVAARVAVRFAETYESMRAIRALLADLPGDGIAAPVASVASVASVASVANAPSGSG 464
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
+ + +E +G V L RC P + + A+E
Sbjct: 465 DAGAAGRGADDARRG-----VGWIEGWRGPVLVALELGAQGGVARCHCHDPSWHNWPALE 519
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
G+ + D I S ++ + D
Sbjct: 520 HAIIGNIVPDFPLINKSFNLNYAGHD 545
>gi|303243874|ref|ZP_07330214.1| hydrogenase, component E-formate hydrogenlyase subunit 5-like
protein [Methanothermococcus okinawensis IH1]
gi|302485810|gb|EFL48734.1| hydrogenase, component E-formate hydrogenlyase subunit 5-like
protein [Methanothermococcus okinawensis IH1]
Length = 518
Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats.
Identities = 75/395 (18%), Positives = 132/395 (33%), Gaps = 25/395 (6%)
Query: 3 KKKSRSF-TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ K + GP H GE + ++ G HRG EK +
Sbjct: 146 EVKGEEIHQVAVGPVHAGIIEPGHFRFNCIGEKILNLEMVHGYQHRGIEKQLMNCKKNIL 205
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
P + + + ++ A+E L R L EI RI +H+ + A
Sbjct: 206 PPLIESVAGDTVIGNSICFSEAIEGLCDYNTDEHLLNYRRLLLEIERIANHIGTLGGLAG 265
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D G L + R + + G+R + RP G + + + ++ ++
Sbjct: 266 DAGYLPTAAYYGRIRGDFLNMFVLICGNRFGRSSVRPFGAPFKLDDDKIIELIKRFETLK 325
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC-Y 240
+ D+ +L+ N R G V + A G G R SG +D+RKS
Sbjct: 326 KEVIDVGNLMLDNPEVLGRFDYTGMVDTKTAKLIGMVGPAGRASGINYDVRKSFSNAKDI 385
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+ +I + K G R E S+ + + + +D
Sbjct: 386 YDRGIEIVVRKDGAVSSRAKTYFKETINSIDFCIGLLKVADFQINNSSNNNTD------- 438
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ES I P + EA +GE +I+D + R KI+ P
Sbjct: 439 -------IESEIALK---------PNSFIVTMEEAWRGELSHCIITDENGRIIRYKIKDP 482
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ + A+E + + D S ++ + D
Sbjct: 483 SFHNWNALELAVRNEGIYDFPLCNKSFNLSYCGFD 517
>gi|169831204|ref|YP_001717186.1| nickel-dependent hydrogenase, large subunit [Candidatus
Desulforudis audaxviator MP104C]
gi|169638048|gb|ACA59554.1| nickel-dependent hydrogenase, large subunit [Candidatus
Desulforudis audaxviator MP104C]
Length = 485
Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats.
Identities = 72/453 (15%), Positives = 128/453 (28%), Gaps = 80/453 (17%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L++ +ELDG V GLL RG E +++ + A R+ V P++ +
Sbjct: 15 IEGHLKIEVELDGNRVHDA-WSTGLLFRGLEIILKGRDPRDAQHITQRICGVUPISHGIS 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA-------------- 125
L ++ GI P G+++R L I SH+L+ A
Sbjct: 74 SVLCLDDAFGIIPPKNGRILRNLIQGANLIQSHILHFYHLAALDYVKGPETAPFVPRYEG 133
Query: 126 ------------LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDI 173
+ + R K H F PGGV + E VE
Sbjct: 134 DYRLPPDVTAVVVGHYIQALAMRRKAHEMAAIFGAKIPHTTVFIPGGVTSTVTAEQVEAY 193
Query: 174 GCWCDSFPSALN------------DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS--- 218
S ++ D + K ++ G +
Sbjct: 194 AQKLRELISFIDNVYIPDVLAVAGAYEDWFSVGVGTKNLLSYGAYPLTDEKDPNGKNLFF 253
Query: 219 --GVMIRGSG-------------AAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRM 263
GV GS +W K+ + + G + +
Sbjct: 254 TRGVYAGGSFMPMSADHIREHVTHSWYESKAGGKHPFEGETVPAVDKRGGYSWIKAPRYE 313
Query: 264 MEMRESVKIIRQCVNRLLGKNKVGP-----VSASDPKIVPPKR--ADMKRSMESLIHHFK 316
E + RQ V R +G + + + + M +E L
Sbjct: 314 SYSCEVGALARQWVGRDPQVIGLGDKAFSVMGRHFARAIETTKVAHAMLGWLEELEPGQP 373
Query: 317 LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QA 367
+ + + EAP+G G ++ + + P ++
Sbjct: 374 AFRPHDVPEKAKGFGLTEAPRGALGHWIEI-ENHVIKNYQAVVPSTWNIGPRDDKGVRGP 432
Query: 368 MEFLCKGHQLAD------VSAILGSLDIVFGEV 394
+E G ++AD + I+ + D
Sbjct: 433 LEEALVGTEVADPDNPIELVRIVRAFDPCIACA 465
>gi|297616576|ref|YP_003701735.1| nickel-dependent hydrogenase large subunit [Syntrophothermus
lipocalidus DSM 12680]
gi|297144413|gb|ADI01170.1| nickel-dependent hydrogenase large subunit [Syntrophothermus
lipocalidus DSM 12680]
Length = 480
Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats.
Identities = 66/453 (14%), Positives = 120/453 (26%), Gaps = 80/453 (17%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L++ +E+DG V G + RG E +++ + + R+ V P++ A
Sbjct: 13 IEGHLKIEVEIDGGKVVDAR-TSGTMFRGMELIMQGRDPRDSSQIMQRICGVCPVSHGTA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG--------------- 124
+LA++ GIE P G++IR L I SH+L+ A
Sbjct: 72 ASLALDDAFGIEAPDNGRIIRNLILGSNYIQSHILHFFHLAALDYVKGPDVPPFVPRYQA 131
Query: 125 -----------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDI 173
A+ + + R K G H GG + + + +
Sbjct: 132 DYRLPDAVNKQAVDNYIKALDMRRKAQEMLAIWGGKMPHQQGIVVGGATEQPDTQKIVEF 191
Query: 174 GCWCDSFPSALN------------DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVM 221
++ SD R G +
Sbjct: 192 KWRLAELIDFIDNVYVPTVKAVAEAYSDWFDIGRGCMNLLAYGGMPLEQGKDHVKKEKFF 251
Query: 222 IRGSGAAWDLRKSQP--------YECYSELDF----------DIPIGKHGDCYDRYLVRM 263
G+ + R P Y Y + P + + +
Sbjct: 252 PSGTYIRREYRPFDPSLVAEEVKYSWYKDDTGGKKPTEAVVTPDPKKEGAYSWLKAPRYN 311
Query: 264 MEMRESVKIIRQCVNRLLGKNKVGP-----VSASDPKIVPPKR--ADMKRSMESLIHHFK 316
+ E + R + ++ +G + + + M + L
Sbjct: 312 GIVMEVGPLARMWIKKVKEVTDLGEKAFSVMGRHFARAIECSLVAHAMDEWVLQLEPGKP 371
Query: 317 LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------A 367
+ T EAP+G G + + P +
Sbjct: 372 VATPYEIPGEAYGMGLTEAPRGALGHWHHIK-HQRTAVYNAVVPTTWNASPRDGLNQRGP 430
Query: 368 MEFLCKGHQLAD------VSAILGSLDIVFGEV 394
ME +AD ++ S D FG
Sbjct: 431 MEQALIDTPVADPNNPVEPVRVVRSFDPCFGCA 463
>gi|118463072|ref|YP_884227.1| hydrogenase-4, G subunit, putative [Mycobacterium avium 104]
gi|118164359|gb|ABK65256.1| hydrogenase-4, G subunit, putative [Mycobacterium avium 104]
Length = 492
Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats.
Identities = 85/387 (21%), Positives = 131/387 (33%), Gaps = 38/387 (9%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
+ I GP H + GE V R+ + +HRG E+L + AV +R+
Sbjct: 143 YEIPVGPVHAGLIEPGHFRFSVVGETVLRLKARLWFVHRGLEQLFHGRIASGAVDLAERV 202
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
A++LAVE LGI +P +R L E+ R+ +H ++ A DVG
Sbjct: 203 SGDTSAAHALAHSLAVEDALGIVVPNNVHRLRALLIELERLYNHAADLGALANDVGFALA 262
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
RE+L+ +G R+ RPGGV P+ + S + L +++
Sbjct: 263 NAHALRIREELLRINAAVTGHRLLRGAIRPGGVTLHALPDARQ-----LRSIAADLAEVA 317
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
+L GN + R + +DA G G + R SG D R P L
Sbjct: 318 ELTLGNSVIYDRFAGTAILPADDACAMGCLGYVARASGIRTDARVEHPSVA---LPVTEI 374
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
GD RY VR E S + G
Sbjct: 375 TQSAGDVLARYTVRRDEFAASTTLATYLAESHTG-------------------------- 408
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
+L +H G VE +G + + R KI P + + A+
Sbjct: 409 -TLDYHTPTPVVGG---PRSGVGIVEGWRGTIVHRVEIAADCRITRAKIVDPSWFNWPAL 464
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVD 395
+ D S ++ + D
Sbjct: 465 PVAMADTIVPDFPLTNKSFNLSYAGND 491
>gi|195573885|ref|XP_002104922.1| GD21215 [Drosophila simulans]
gi|194200849|gb|EDX14425.1| GD21215 [Drosophila simulans]
Length = 194
Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats.
Identities = 111/198 (56%), Positives = 142/198 (71%), Gaps = 4/198 (2%)
Query: 199 QRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDR 258
RN+ IG + DA +G +G ++R +G WDLRK QPY+ Y E+DFD+ +G +GDCYDR
Sbjct: 1 MRNIGIGVISAHDALNYGCTGPVLRATGVKWDLRKQQPYDAYDEIDFDVVVGSNGDCYDR 60
Query: 259 YLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLY 318
YLVRM EMRESV II+QC++ + G + D KI PP+R+ MK ME LIHHFK +
Sbjct: 61 YLVRMREMRESVNIIKQCIDSM----PPGEIKVDDLKICPPQRSKMKEGMEDLIHHFKHF 116
Query: 319 TEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLA 378
++G+ VP G+ Y AVE+PKGEFG +LISDG ++PYRCKIR YAHL M + H LA
Sbjct: 117 SQGFRVPPGQTYCAVESPKGEFGAFLISDGSSRPYRCKIRPASYAHLALMAKMAPAHLLA 176
Query: 379 DVSAILGSLDIVFGEVDR 396
DV AI+GSLDIVFGE+DR
Sbjct: 177 DVVAIIGSLDIVFGEIDR 194
>gi|260893628|ref|YP_003239725.1| nickel-dependent hydrogenase large subunit [Ammonifex degensii KC4]
gi|260865769|gb|ACX52875.1| nickel-dependent hydrogenase large subunit [Ammonifex degensii KC4]
Length = 481
Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats.
Identities = 64/456 (14%), Positives = 122/456 (26%), Gaps = 87/456 (19%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L++ +E+ V G L RG E +++ + A R+ V P++ A
Sbjct: 13 IEGHLKIEVEVANGKVVNA-WSSGTLFRGIEIILKGRDPRDAQHITQRICGVCPLSHGIA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA-------------- 125
L ++ ++P G++IR L ++SH+L+ T A
Sbjct: 72 SVLCLDDAFKAQVPPNGRIIRNLIQGANWLMSHILHFYTLAALDYVKGPDTPPFVPRFKG 131
Query: 126 ------------LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDI 173
+ L + R K H F PGGV + + E +E
Sbjct: 132 DYRLPPKVNEVLVQHYLEALDARRKAHEMLAVFGAKAPHPTVFIPGGVTEAVTAERIEKF 191
Query: 174 GCWCDSFPSALND-ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAA---- 228
+ + ++ + + +IG G + G A
Sbjct: 192 RTYLEELIRFIDQTYVPDVKIVAEYYSDYWDIG----RGCRNMLAYGAFPQADGQAGRRD 247
Query: 229 -------WDLRKSQP-----------YECY----------SELDFDIPIGKHGDCYDRYL 260
+ K P Y Y P + +
Sbjct: 248 LFFKPGVYTNGKFAPFDPQKIVEDVKYSWYANDTSRLPPARGETVPQPRKAGAYSWLKAP 307
Query: 261 VRMMEMRESVKIIRQCVNRLLGKNKVGPVSA-----SDPKIVPPKR--ADMKRSMESLIH 313
E + R +N+ +G + + + R M + L
Sbjct: 308 RYNGLPHEVGPLARSWINQAPEIVSLGERAFSVLGRHYARALECSRLAHAMLDWLNQLKV 367
Query: 314 HFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ------- 366
+Y EA +G G ++ + + P +
Sbjct: 368 GEPVYLPAQVPEEAHGMGLTEAARGALGHWIEIK-NYRIANYQAVVPTTWNASPRDDRGQ 426
Query: 367 --AMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
+E G + D ++ ++ S D
Sbjct: 427 PGPIEQALIGTPVQDPENPIEITRVVRSFDPCLACA 462
>gi|294666774|ref|ZP_06732008.1| NADH dehydrogenase delta subunit [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292603435|gb|EFF46852.1| NADH dehydrogenase delta subunit [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 297
Score = 219 bits (559), Expect = 6e-55, Method: Composition-based stats.
Identities = 120/241 (49%), Positives = 162/241 (67%), Gaps = 25/241 (10%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K++ R++T+NFGPQHPAAHGVLRLILE+DGE V R DPHIGLLHRGTEKL E+K F Q+V
Sbjct: 19 KQEIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHRGTEKLAESKPFNQSV 78
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
PY DRLDYV+ M EHAY A+E L+GIE P R Q IR ++ EI RI +HL+ V + A+D
Sbjct: 79 PYMDRLDYVSMMCNEHAYVRAIESLMGIEAPERAQYIRTMFDEITRIKNHLMWVGSNALD 138
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE-------------- 168
+GA+ L+ F ERE+LM YE SG+RMHAAY+RPGGV++D+P
Sbjct: 139 LGAMAVMLYAFREREELMDVYEAVSGARMHAAYYRPGGVYRDLPDRMPQYKESRWHKGGA 198
Query: 169 -----------LVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF 217
+++ + + ++FP+ +++ LLT NRI+KQR V++G + + A WG
Sbjct: 199 LKKRNAGREGTMLDFLEEFTNTFPARVDEYETLLTDNRIWKQRTVDVGIISPDLARAWGH 258
Query: 218 S 218
Sbjct: 259 D 259
>gi|294340394|emb|CAZ88775.1| putative NADH dehydrogenase [Thiomonas sp. 3As]
Length = 532
Score = 219 bits (558), Expect = 6e-55, Method: Composition-based stats.
Identities = 94/387 (24%), Positives = 154/387 (39%), Gaps = 33/387 (8%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
+ FGP + + GE + P + HR E E T +R+
Sbjct: 178 LPFGPVRADIVESAQFLFFYIGEGILHYHPRLFYKHRAMEGRFEGATLATGAVLAERVSG 237
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ + A+A AVE +G P R + +RV+ +E+ R+ +HL + +
Sbjct: 238 IDSVAHALAFAQAVEGAMGWRPPPRARYLRVVLAELERLYNHLHYLGHLSKTTTLKVGET 297
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
G E++ R +GSR PGG+ +D+ ++ DS ++
Sbjct: 298 EGHLLEERVKQINGRLTGSRFLRGLITPGGLRRDLDISGLDK---ALDSVNDEIDRYLQR 354
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
L R R + G ++ + A+ G G + R S DLR+ PY Y ++ F +P+
Sbjct: 355 LENTRSHLDRLMTTGRLERQVAFDQGACGPIERASNLDRDLRRDHPYANYEKVRFSVPVQ 414
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
+ GD + R LVRM E+RES+ IIRQ + G+ K G V D ME
Sbjct: 415 QGGDAHARSLVRMEEIRESLAIIRQTI----GRTKPGEVLRFDV-------------MED 457
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLI-SDGGNKPYRCKIRAPGYAHLQAME 369
P GE VEA +G + S+ + R KI+ P +++ +
Sbjct: 458 AD------------PQGEGLGWVEATRGGLLYAVHLSEDRTRLQRVKIKEPSFSNWRVFP 505
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVDR 396
F + + D + S + DR
Sbjct: 506 FTVEDSNMMDYAINEASFGLSIAGADR 532
>gi|150401364|ref|YP_001325130.1| hydrogenase, component E-formate hydrogenlyase subunit 5-like
protein [Methanococcus aeolicus Nankai-3]
gi|150014067|gb|ABR56518.1| hydrogenase, component E-formate hydrogenlyase subunit 5-like
protein [Methanococcus aeolicus Nankai-3]
Length = 518
Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats.
Identities = 73/388 (18%), Positives = 129/388 (33%), Gaps = 27/388 (6%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
+ GP H GE + ++ G HRG EK I + +
Sbjct: 154 VAVGPVHAGIIEPGHFRFNCIGETILSLEIQHGYQHRGIEKQILNCKKEVLPLIIESIAG 213
Query: 71 VAPMNQEHAYALAVEKL--LGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+ ++ A+E L E R L EI RI +H+ + A DVG +
Sbjct: 214 DTVIGNSICFSEAIEWLSNCNYEANEPLYNYRRLLLEIERIANHIGTMGGLAGDVGYIPT 273
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
+ R + + G+R + RP G + + ++++ + + D+
Sbjct: 274 ASYYGRIRGDFLNMFVLICGNRFGRSSVRPFGAPFKLSDDHIKELIKRFEQLKKEVIDVG 333
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
+L+ N R G V + A G G R SG +D+RKS
Sbjct: 334 NLMLDNPEVLGRFDYTGIVDTKTAKLIGLVGPAGRASGIKYDVRKSFSKAKNIYNRGIGL 393
Query: 249 I-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
+ K G R E +S++ + + + S
Sbjct: 394 VARKDGAVSSRAKTYFYETLDSIEFCIELLK--------------------VADFQINDS 433
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
+ L K + P + EA +GE +I+D R KI+ P + + A
Sbjct: 434 ADKLEKIEKTVLK----PNSFIITMEEAWRGELSHCIITDENGNIIRYKIKDPSFHNWTA 489
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVD 395
+E + + + D S ++ + D
Sbjct: 490 LELVVRNEGIYDFPLCNKSFNLSYCGFD 517
>gi|152990464|ref|YP_001356186.1| Ni-Fe hydrogenase, large subunit HycE [Nitratiruptor sp. SB155-2]
gi|151422325|dbj|BAF69829.1| Ni-Fe hydrogenase, large subunit HycE [Nitratiruptor sp. SB155-2]
Length = 454
Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats.
Identities = 73/387 (18%), Positives = 128/387 (33%), Gaps = 44/387 (11%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
F + GP H +GE + ++ +RG EK++E K A +R+
Sbjct: 111 FQVGVGPIHAGIIEPGHFHFSQEGESILHLEVRHFYKYRGIEKIVERKDPKDAWHIVERI 170
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+ + AY + + Q + E+ RI HL+++ D G
Sbjct: 171 SGNESIAYQLAYLDLLRQASKQGENENIQKYGSILLELERIAHHLVDLGFIPNDAGFGAA 230
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
+ E + + R R D + + + ++
Sbjct: 231 LAYSSMLAEDTRRVLKTLTNHRFGFGAIRGVARKFDQNA-----LHSFLNDLEKKMDFFE 285
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
+ R G + + A + GV+ R SG D R+ Y E F I
Sbjct: 286 KWIIEIPSLWDRLDTTGKLSQKKALKYSTLGVVARASGIHIDRREV---PFYKEHGFSIQ 342
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
+ GD R+ VR+ E++ S++IIR ++ + +
Sbjct: 343 TQESGDVAARFKVRLQEVKNSIQIIRNLLDFQED-------------------EVVLNAF 383
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
E GE +A E+ GE +YL K R R P + + QA+
Sbjct: 384 ED----------------GEYFAFTESSLGEVMLYLKIK-DQKIDRFFARDPSFINWQAL 426
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVD 395
+ + +AD I S D+ + D
Sbjct: 427 HLMMPKNIIADFPLINKSCDLSYAGSD 453
>gi|256830387|ref|YP_003159115.1| NADH-ubiquinone oxidoreductase chain 49kDa [Desulfomicrobium
baculatum DSM 4028]
gi|256579563|gb|ACU90699.1| NADH-ubiquinone oxidoreductase chain 49kDa [Desulfomicrobium
baculatum DSM 4028]
Length = 493
Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats.
Identities = 74/386 (19%), Positives = 134/386 (34%), Gaps = 31/386 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ GP H + GE V ++ +G HRG E ++ + + +
Sbjct: 138 EVAVGPVHAGVIEPGHFRFQCAGEEVLHLEIALGYQHRGIEDALQNGPHPATMNQIETVA 197
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ A+A +E L G+E P+R Q +R + E+ R+ +H ++ AMDV L
Sbjct: 198 GDTTIAHATAHASVLEALGGVETPLRAQWLRAMALELERLANHTGDMGALAMDVAFLPTS 257
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ R + G+R RPGG D+ E ++ + + + +
Sbjct: 258 AACGKIRGDFLNLTALLCGNRFGRGLIRPGGCRHDLEEERLKTLTERLKAHMADVEQAMA 317
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ R N+G V A G G R G D+R P + + +
Sbjct: 318 WFWDAASVRVRFRNVGVVHPSQATDIGLVGPAARACGLVRDVRFDHPAGWHRFSHSPVAV 377
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD + R VR +E++ S + + + PV +P +
Sbjct: 378 WPSGDIFARARVRSLEIQRSGRYLFDQLA--------APVDGDITAALPAPQ-------- 421
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
P A VE +GE ++D + KI P + + +
Sbjct: 422 ---------------PESLAVALVEGWRGEVCHVALTDYFGRFRSYKITDPSFHNWTGLA 466
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
+G ++D S ++ + D
Sbjct: 467 LSLRGTAVSDFPICNKSFNLSYCGFD 492
>gi|289552338|ref|ZP_06441548.1| formate hydrogenase hycE [Mycobacterium tuberculosis KZN 605]
gi|298527479|ref|ZP_07014888.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|308375061|ref|ZP_07667939.1| formate hydrogenase hycE [Mycobacterium tuberculosis SUMu007]
gi|308376302|ref|ZP_07668249.1| formate hydrogenase hycE [Mycobacterium tuberculosis SUMu008]
gi|289436970|gb|EFD19463.1| formate hydrogenase hycE [Mycobacterium tuberculosis KZN 605]
gi|298497273|gb|EFI32567.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|308347623|gb|EFP36474.1| formate hydrogenase hycE [Mycobacterium tuberculosis SUMu007]
gi|308351564|gb|EFP40415.1| formate hydrogenase hycE [Mycobacterium tuberculosis SUMu008]
gi|328456794|gb|AEB02217.1| formate hydrogenase hycE [Mycobacterium tuberculosis KZN 4207]
Length = 491
Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats.
Identities = 83/387 (21%), Positives = 129/387 (33%), Gaps = 38/387 (9%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
+ I GP H + GE + R+ + +HRG EKL + AV +R+
Sbjct: 142 YEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHRGIEKLFHGRPATAAVDLAERI 201
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
A++LA+E LGIE+P +R L E+ R+ +H ++ A DVG
Sbjct: 202 SGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVELERLYNHAADLGALANDVGYSLA 261
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
RE L+ +G R+ R GGV P+ E + L +++
Sbjct: 262 NAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRALPDTDE-----LAALAVDLAEVA 316
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
L N + R + +DA G G + R SG D R P L
Sbjct: 317 TLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDARVEHPTIV---LPITEI 373
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
GD RY VR E S + + V + GP+ +
Sbjct: 374 GAPDGDVLARYTVRRDEFAASAALAQHIVE-----SHTGPIEYAA--------------- 413
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
T VE +G + D + R K+ P + + A+
Sbjct: 414 ----------TLHPVGAPSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPAL 463
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVD 395
+ D S + + D
Sbjct: 464 PVAMADTIVPDFPLANKSFNQSYAGND 490
>gi|326403594|ref|YP_004283676.1| putative NADH-ubiquinone oxidoreductase [Acidiphilium multivorum
AIU301]
gi|325050456|dbj|BAJ80794.1| putative NADH-ubiquinone oxidoreductase [Acidiphilium multivorum
AIU301]
Length = 477
Score = 217 bits (553), Expect = 3e-54, Method: Composition-based stats.
Identities = 87/387 (22%), Positives = 145/387 (37%), Gaps = 36/387 (9%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
I GP H ++GE + R++ +G H+GT L+ T A R+
Sbjct: 124 IPVGPIHAGTIEPGHFRFTVNGETIVRLEARLGYTHKGTLGLMRGATPDAASRLAGRVSG 183
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ + A+A AVE LG+ +P R ++R + +E+ R+ +H + D G
Sbjct: 184 DSTVAYAWAFARAVEAALGVVVPKRASVLRGVMAELERLANHAGDFGAICNDAGFPLINA 243
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
RE ++ E G R+ PGGV D+ P + S+ + +L
Sbjct: 244 HAGALRETILRQAEACFGHRLMMDRIVPGGVAADLAPASAASLLAELPSWRGRFERLVEL 303
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
+ R V G + + A G G + R +G +D R+ PY Y D+P
Sbjct: 304 YGKTASLQDRVVGAGRLAPDLARRLGCGGYVGRAAGQDFDARRDAPYPPYDRHAPDVPAL 363
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
GD R +R+ E+R SV +I + + G G + AS P+
Sbjct: 364 AAGDVDARVRIRIAEIRASVALIGELL----GDLPEGDIRASRPE--------------- 404
Query: 311 LIHHFKLYTEGYHVPVGEVYAA--VEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
GE + VE +G+ + G +R P + A+
Sbjct: 405 --------------NGGEAFGCALVEGFRGDVFAAVRLRGA-VVADAFMRDPSWFFWPAL 449
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVD 395
E +G+ +AD S + + D
Sbjct: 450 EAAIEGNIVADFPLCNKSFNAAYSGCD 476
>gi|255021730|ref|ZP_05293770.1| NADH dehydrogenase (ubiquinone), 30 kDa subunit [Acidithiobacillus
caldus ATCC 51756]
gi|254968870|gb|EET26392.1| NADH dehydrogenase (ubiquinone), 30 kDa subunit [Acidithiobacillus
caldus ATCC 51756]
Length = 466
Score = 217 bits (553), Expect = 3e-54, Method: Composition-based stats.
Identities = 89/399 (22%), Positives = 145/399 (36%), Gaps = 40/399 (10%)
Query: 1 MDKKKSRSFT-INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFL 59
M + + + +GP GE + P + HRG E +
Sbjct: 105 MPEVQGDQVQDLYWGPIRADVVETGEFHYSYIGEAILHYHPRLFFKHRGLEARFVGQQAD 164
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
AV +R+ V + Y AVE GIE+P R QL+RV+ +E+ R+ +H
Sbjct: 165 AAVFLAERVSGVGSVCHALTYCQAVEAAWGIEVPPRAQLLRVILAELERLYNHFHYFGLL 224
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
A GF E++ + +GSR + GG+ +D+P E + ++
Sbjct: 225 AKTTTLKVGSATGFLLEERVKQVAGQLTGSRFLRSLLTVGGLRRDLPAEHLA---SALEN 281
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
L R + G + E A+ G +G + R SG DLR+ PY
Sbjct: 282 IIDEGEAYLTRLQQTASHLDRLMGTGILSKEAAFDQGATGPVARASGLDRDLRRDHPYAA 341
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y L F +P+ GD R VR +RE++ ++ Q G + GPV
Sbjct: 342 YHHLRFAVPVRAKGDAMARSEVRAESLREAIALLVQA----SGHLQAGPVR--------- 388
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVG--EVYAAVEAPKGEFGVYLISDGGNKPYRCKI 357
+ VP G E E+P+G + + R KI
Sbjct: 389 --------------------APFAVPNGEQEGLGWTESPRGSLYYSVRIR-DGRLKRVKI 427
Query: 358 RAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++P +++ + G + D + S + DR
Sbjct: 428 KSPSFSNWRVFPLTVHGTNMMDYAINEASFGLTIAGCDR 466
>gi|15607229|ref|NP_214601.1| formate hydrogenase HycE [Mycobacterium tuberculosis H37Rv]
gi|148659849|ref|YP_001281372.1| putative formate hydrogenase HycE [Mycobacterium tuberculosis
H37Ra]
gi|148821279|ref|YP_001286033.1| formate hydrogenase hycE [Mycobacterium tuberculosis F11]
gi|167970618|ref|ZP_02552895.1| formate hydrogenase hycE [Mycobacterium tuberculosis H37Ra]
gi|215406077|ref|ZP_03418258.1| formate hydrogenase hycE [Mycobacterium tuberculosis 02_1987]
gi|215413943|ref|ZP_03422605.1| formate hydrogenase hycE [Mycobacterium tuberculosis 94_M4241A]
gi|215425286|ref|ZP_03423205.1| formate hydrogenase hycE [Mycobacterium tuberculosis T92]
gi|215433003|ref|ZP_03430922.1| formate hydrogenase hycE [Mycobacterium tuberculosis EAS054]
gi|215448365|ref|ZP_03435117.1| formate hydrogenase hycE [Mycobacterium tuberculosis T85]
gi|219555872|ref|ZP_03534948.1| formate hydrogenase hycE [Mycobacterium tuberculosis T17]
gi|253797005|ref|YP_003030006.1| formate hydrogenase hycE [Mycobacterium tuberculosis KZN 1435]
gi|254366543|ref|ZP_04982587.1| formate hydrogenase hycE [Mycobacterium tuberculosis str. Haarlem]
gi|254549019|ref|ZP_05139466.1| formate hydrogenase hycE [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|260199083|ref|ZP_05766574.1| formate hydrogenase hycE [Mycobacterium tuberculosis T46]
gi|260203231|ref|ZP_05770722.1| formate hydrogenase hycE [Mycobacterium tuberculosis K85]
gi|289441456|ref|ZP_06431200.1| formate hydrogenase hycE [Mycobacterium tuberculosis T46]
gi|289567977|ref|ZP_06448204.1| formate hydrogenase hycE [Mycobacterium tuberculosis T17]
gi|289572667|ref|ZP_06452894.1| formate hydrogenase hycE [Mycobacterium tuberculosis K85]
gi|289747854|ref|ZP_06507232.1| formate hydrogenase hycE [Mycobacterium tuberculosis 02_1987]
gi|289748555|ref|ZP_06507933.1| formate hydrogenase hycE [Mycobacterium tuberculosis T92]
gi|289756149|ref|ZP_06515527.1| formate hydrogenase hycE [Mycobacterium tuberculosis EAS054]
gi|289760186|ref|ZP_06519564.1| formate hydrogenase hycE [Mycobacterium tuberculosis T85]
gi|294995705|ref|ZP_06801396.1| formate hydrogenase hycE [Mycobacterium tuberculosis 210]
gi|297632560|ref|ZP_06950340.1| formate hydrogenase hycE [Mycobacterium tuberculosis KZN 4207]
gi|297729533|ref|ZP_06958651.1| formate hydrogenase hycE [Mycobacterium tuberculosis KZN R506]
gi|306778382|ref|ZP_07416719.1| formate hydrogenase hycE [Mycobacterium tuberculosis SUMu001]
gi|306778914|ref|ZP_07417251.1| formate hydrogenase hycE [Mycobacterium tuberculosis SUMu002]
gi|306782702|ref|ZP_07421024.1| formate hydrogenase hycE [Mycobacterium tuberculosis SUMu003]
gi|306787069|ref|ZP_07425391.1| formate hydrogenase hycE [Mycobacterium tuberculosis SUMu004]
gi|306791626|ref|ZP_07429928.1| formate hydrogenase hycE [Mycobacterium tuberculosis SUMu005]
gi|306795689|ref|ZP_07433991.1| formate hydrogenase hycE [Mycobacterium tuberculosis SUMu006]
gi|306970271|ref|ZP_07482932.1| formate hydrogenase hycE [Mycobacterium tuberculosis SUMu009]
gi|306974504|ref|ZP_07487165.1| formate hydrogenase hycE [Mycobacterium tuberculosis SUMu010]
gi|307082212|ref|ZP_07491382.1| formate hydrogenase hycE [Mycobacterium tuberculosis SUMu011]
gi|307082554|ref|ZP_07491667.1| formate hydrogenase hycE [Mycobacterium tuberculosis SUMu012]
gi|313656861|ref|ZP_07813741.1| formate hydrogenase hycE [Mycobacterium tuberculosis KZN V2475]
gi|1405757|emb|CAA98923.1| POSSIBLE FORMATE HYDROGENASE HYCE (FHL) [Mycobacterium tuberculosis
H37Rv]
gi|134152055|gb|EBA44100.1| formate hydrogenase hycE [Mycobacterium tuberculosis str. Haarlem]
gi|148504001|gb|ABQ71810.1| putative formate hydrogenase HycE [Mycobacterium tuberculosis
H37Ra]
gi|148719806|gb|ABR04431.1| formate hydrogenase hycE [Mycobacterium tuberculosis F11]
gi|253318508|gb|ACT23111.1| formate hydrogenase hycE [Mycobacterium tuberculosis KZN 1435]
gi|289414375|gb|EFD11615.1| formate hydrogenase hycE [Mycobacterium tuberculosis T46]
gi|289537098|gb|EFD41676.1| formate hydrogenase hycE [Mycobacterium tuberculosis K85]
gi|289541730|gb|EFD45379.1| formate hydrogenase hycE [Mycobacterium tuberculosis T17]
gi|289688382|gb|EFD55870.1| formate hydrogenase hycE [Mycobacterium tuberculosis 02_1987]
gi|289689142|gb|EFD56571.1| formate hydrogenase hycE [Mycobacterium tuberculosis T92]
gi|289696736|gb|EFD64165.1| formate hydrogenase hycE [Mycobacterium tuberculosis EAS054]
gi|289715750|gb|EFD79762.1| formate hydrogenase hycE [Mycobacterium tuberculosis T85]
gi|308213340|gb|EFO72739.1| formate hydrogenase hycE [Mycobacterium tuberculosis SUMu001]
gi|308328092|gb|EFP16943.1| formate hydrogenase hycE [Mycobacterium tuberculosis SUMu002]
gi|308332466|gb|EFP21317.1| formate hydrogenase hycE [Mycobacterium tuberculosis SUMu003]
gi|308336230|gb|EFP25081.1| formate hydrogenase hycE [Mycobacterium tuberculosis SUMu004]
gi|308339844|gb|EFP28695.1| formate hydrogenase hycE [Mycobacterium tuberculosis SUMu005]
gi|308343838|gb|EFP32689.1| formate hydrogenase hycE [Mycobacterium tuberculosis SUMu006]
gi|308352249|gb|EFP41100.1| formate hydrogenase hycE [Mycobacterium tuberculosis SUMu009]
gi|308356206|gb|EFP45057.1| formate hydrogenase hycE [Mycobacterium tuberculosis SUMu010]
gi|308360159|gb|EFP49010.1| formate hydrogenase hycE [Mycobacterium tuberculosis SUMu011]
gi|308367709|gb|EFP56560.1| formate hydrogenase hycE [Mycobacterium tuberculosis SUMu012]
gi|326905847|gb|EGE52780.1| formate hydrogenase hycE [Mycobacterium tuberculosis W-148]
Length = 492
Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats.
Identities = 83/387 (21%), Positives = 129/387 (33%), Gaps = 38/387 (9%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
+ I GP H + GE + R+ + +HRG EKL + AV +R+
Sbjct: 143 YEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHRGIEKLFHGRPATAAVDLAERI 202
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
A++LA+E LGIE+P +R L E+ R+ +H ++ A DVG
Sbjct: 203 SGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVELERLYNHAADLGALANDVGYSLA 262
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
RE L+ +G R+ R GGV P+ E + L +++
Sbjct: 263 NAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRALPDTDE-----LAALAVDLAEVA 317
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
L N + R + +DA G G + R SG D R P L
Sbjct: 318 TLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDARVEHPTIV---LPITEI 374
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
GD RY VR E S + + V + GP+ +
Sbjct: 375 GAPDGDVLARYTVRRDEFAASAALAQHIVE-----SHTGPIEYAA--------------- 414
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
T VE +G + D + R K+ P + + A+
Sbjct: 415 ----------TLHPVGAPSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPAL 464
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVD 395
+ D S + + D
Sbjct: 465 PVAMADTIVPDFPLANKSFNQSYAGND 491
>gi|31791265|ref|NP_853758.1| formate hydrogenase HycQ [Mycobacterium bovis AF2122/97]
gi|121636000|ref|YP_976223.1| putative formate hydrogenase hycQ (FHL) [Mycobacterium bovis BCG
str. Pasteur 1173P2]
gi|224988473|ref|YP_002643160.1| putative formate hydrogenase [Mycobacterium bovis BCG str. Tokyo
172]
gi|31616850|emb|CAD92952.1| POSSIBLE FORMATE HYDROGENASE HYCQ (FHL) [Mycobacterium bovis
AF2122/97]
gi|121491647|emb|CAL70105.1| Possible formate hydrogenase hycQ (FHL) [Mycobacterium bovis BCG
str. Pasteur 1173P2]
gi|224771586|dbj|BAH24392.1| putative formate hydrogenase [Mycobacterium bovis BCG str. Tokyo
172]
Length = 492
Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats.
Identities = 83/387 (21%), Positives = 129/387 (33%), Gaps = 38/387 (9%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
+ I GP H + GE + R+ + +HRG EKL + AV +R+
Sbjct: 143 YEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHRGIEKLFHGRPATAAVDLAERI 202
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
A++LA+E LGIE+P +R L E+ R+ +H ++ A DVG
Sbjct: 203 SGDTSAAHALAHSLAIEDALGIELPHEIHRLRALIVELERLYNHAADLGALANDVGYSLA 262
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
RE L+ +G R+ R GGV P+ E + L +++
Sbjct: 263 NAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRALPDTDE-----LAALAVDLAEVA 317
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
L N + R + +DA G G + R SG D R P L
Sbjct: 318 TLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDARVEHPTIV---LPITEI 374
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
GD RY VR E S + + V + GP+ +
Sbjct: 375 GAPDGDVLARYTVRRDEFAASAALAQHIVE-----SHTGPIEYAA--------------- 414
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
T VE +G + D + R K+ P + + A+
Sbjct: 415 ----------TLHPVGAPSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPAL 464
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVD 395
+ D S + + D
Sbjct: 465 PVAMADTIVPDFPLANKSFNQSYAGND 491
>gi|323717287|gb|EGB26493.1| hypothetical protein TMMG_00511 [Mycobacterium tuberculosis
CDC1551A]
Length = 430
Score = 216 bits (551), Expect = 4e-54, Method: Composition-based stats.
Identities = 83/387 (21%), Positives = 129/387 (33%), Gaps = 38/387 (9%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
+ I GP H + GE + R+ + +HRG EKL + AV +R+
Sbjct: 81 YEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHRGIEKLFHGRPATAAVDLAERI 140
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
A++LA+E LGIE+P +R L E+ R+ +H ++ A DVG
Sbjct: 141 SGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVELERLYNHAADLGALANDVGYSLA 200
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
RE L+ +G R+ R GGV P+ E + L +++
Sbjct: 201 NAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRALPDTDE-----LAALAVDLAEVA 255
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
L N + R + +DA G G + R SG D R P L
Sbjct: 256 TLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDARVEHPTIV---LPITEI 312
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
GD RY VR E S + + V + GP+ +
Sbjct: 313 GAPDGDVLARYTVRRDEFAASAALAQHIVE-----SHTGPIEYAA--------------- 352
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
T VE +G + D + R K+ P + + A+
Sbjct: 353 ----------TLHPVGAPSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPAL 402
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVD 395
+ D S + + D
Sbjct: 403 PVAMADTIVPDFPLANKSFNQSYAGND 429
>gi|148260402|ref|YP_001234529.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Acidiphilium cryptum
JF-5]
gi|146402083|gb|ABQ30610.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Acidiphilium cryptum
JF-5]
Length = 482
Score = 215 bits (549), Expect = 6e-54, Method: Composition-based stats.
Identities = 87/387 (22%), Positives = 146/387 (37%), Gaps = 36/387 (9%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
I GP H ++GE + R++ +G H+GT L+ T A+ R+
Sbjct: 129 IPVGPIHAGTIEPGHFRFTVNGETIVRLEARLGYTHKGTLGLMRGATPDAALRLAGRVSG 188
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ + A+A AVE LG+ +P R ++R + +E+ R+ +H + D G
Sbjct: 189 DSTVAYAWAFARAVEAALGVVVPKRASVLRGVMAELERLANHAGDFGAICNDAGFPLINA 248
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
RE ++ E G R+ PGGV D+ P + S+ + +L
Sbjct: 249 HAGALRETILRQAEACFGHRLMMDRIVPGGVAADLAPASAASLLAELPSWRGRFERLVEL 308
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
+ R V G + + A G G + R +G +D R+ PY Y D+P
Sbjct: 309 YGKTASLQDRVVAAGRLAPDLARRLGCGGYVGRAAGQDFDARRDAPYPPYDRHAPDVPAL 368
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
GD R +R+ E+R SV +I + + G G + AS P+
Sbjct: 369 AAGDVDARVRIRIAEIRASVALIGELL----GDLPEGDIRASRPESG------------- 411
Query: 311 LIHHFKLYTEGYHVPVGEVYAA--VEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
GE + VE +G+ + G +R P + A+
Sbjct: 412 ----------------GEAFGCALVEGFRGDVFAAVRLRGA-VVADAFLRDPSWFFWPAL 454
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVD 395
E +G+ +AD S + + D
Sbjct: 455 EASIEGNIVADFPLCNKSFNAAYSGCD 481
>gi|58698708|ref|ZP_00373596.1| NADH dehydrogenase I, D subunit [Wolbachia endosymbiont of
Drosophila ananassae]
gi|58534765|gb|EAL58876.1| NADH dehydrogenase I, D subunit [Wolbachia endosymbiont of
Drosophila ananassae]
Length = 204
Score = 215 bits (548), Expect = 8e-54, Method: Composition-based stats.
Identities = 123/184 (66%), Positives = 158/184 (85%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
++ +NFGPQHPAAHGVLRL+LE+DGE++ER DPHIGLLHRGTEKLIE KT+LQA+PYFD
Sbjct: 5 KTMMLNFGPQHPAAHGVLRLVLEMDGEVIERADPHIGLLHRGTEKLIEHKTYLQALPYFD 64
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYV+PM+QEHAY+L VEKLL E+PIR + +RVL+ E+ RIL+HLLNV++QA+DVGA+
Sbjct: 65 RLDYVSPMSQEHAYSLCVEKLLQCEVPIRAKYLRVLFCELTRILNHLLNVSSQALDVGAM 124
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP LW FEEREK++ FYERASG+R HAAY RPGG+ D+P +L+EDI + + FP ++D
Sbjct: 125 TPLLWLFEEREKILEFYERASGARFHAAYIRPGGIAADVPEDLIEDIAKFIEQFPKYIDD 184
Query: 187 ISDL 190
S++
Sbjct: 185 WSEM 188
>gi|260184944|ref|ZP_05762418.1| formate hydrogenase hycE [Mycobacterium tuberculosis CPHL_A]
gi|289445617|ref|ZP_06435361.1| formate hydrogenase hycE [Mycobacterium tuberculosis CPHL_A]
gi|289418575|gb|EFD15776.1| formate hydrogenase hycE [Mycobacterium tuberculosis CPHL_A]
Length = 492
Score = 215 bits (548), Expect = 9e-54, Method: Composition-based stats.
Identities = 83/387 (21%), Positives = 129/387 (33%), Gaps = 38/387 (9%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
+ I GP H + GE + R+ + +HRG EKL + AV +R+
Sbjct: 143 YEIPVGPVHSGLIEPGHFRFSVAGETIVRLKARLWFVHRGIEKLFHGRPATAAVDLAERI 202
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
A++LA+E LGIE+P +R L E+ R+ +H ++ A DVG
Sbjct: 203 SGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVELERLYNHAADLGALANDVGYSLA 262
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
RE L+ +G R+ R GGV P+ E + L +++
Sbjct: 263 NAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRALPDTDE-----LAALAVDLAEVA 317
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
L N + R + +DA G G + R SG D R P L
Sbjct: 318 TLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDARVEHPTIV---LPITEI 374
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
GD RY VR E S + + V + GP+ +
Sbjct: 375 GAPDGDVLARYTVRRDEFAASAALAQHIVE-----SHTGPIEYAA--------------- 414
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
T VE +G + D + R K+ P + + A+
Sbjct: 415 ----------TLHPVGAPSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPAL 464
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVD 395
+ D S + + D
Sbjct: 465 PVAMADTIVPDFPLANKSFNQSYAGND 491
>gi|152991859|ref|YP_001357580.1| Ni-Fe hydrogenase, large subunit HycE [Sulfurovum sp. NBC37-1]
gi|151423720|dbj|BAF71223.1| Ni-Fe hydrogenase, large subunit HycE [Sulfurovum sp. NBC37-1]
Length = 455
Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats.
Identities = 75/387 (19%), Positives = 134/387 (34%), Gaps = 44/387 (11%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
F ++ GP H GE + + +RG EK++E KT L+A P +R+
Sbjct: 112 FQVSVGPIHAGIIEPGHFHFSQAGEDMLHQEVRHFYKYRGIEKMLEGKTLLEAKPVIERI 171
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+ + A+ V + G+E+P+ + E+ RI+ HL ++ D G
Sbjct: 172 SGNESIAYQTAWRDIVCQAAGMELPLSLRKRHAFLLEMERIIHHLTDLGFIPNDAGFGAA 231
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
+ + E + +G R DI + + D +
Sbjct: 232 LAFASKLSEDARRQLQNVTGHRFGFDAIGFENKVLDISS-----LYDYLDGLQKDIAFFE 286
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
+ R G ++ D + GV+ R SG + D R Y E F+I
Sbjct: 287 TWIMDIPSLWDRFDTTGILQKADVLKYDTVGVVARASGFSLDRRSEPFYL---EHGFEIQ 343
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
+ GD R+ VR+ E++ S+ + MK +
Sbjct: 344 TEQSGDVAARFKVRLQEVKNSIVM-------------------------------MKHFL 372
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
E H + + G+ A E+ GE + + R +R P + + Q +
Sbjct: 373 EEDDTHIDI----EKIKDGDYTAFAESSLGELFMNIEIK-DGVIERFFVRDPSFMNWQTL 427
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVD 395
+ + +AD I S D+ + D
Sbjct: 428 HLMMPNNIIADFPLINKSCDLSYAGND 454
>gi|289641810|ref|ZP_06473967.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Frankia symbiont of
Datisca glomerata]
gi|289508335|gb|EFD29277.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Frankia symbiont of
Datisca glomerata]
Length = 514
Score = 214 bits (546), Expect = 2e-53, Method: Composition-based stats.
Identities = 77/387 (19%), Positives = 134/387 (34%), Gaps = 39/387 (10%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
+ I GP H + GE + ++ + +H+G EKL E + + +P +R+
Sbjct: 166 YEIPVGPVHAGLIEPGHFRFSVVGETILKLKARLWFVHKGIEKLFERRDVERGLPLAERI 225
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+ AY LAVE+ +P + R L E+ R+ +H+ ++ DVG
Sbjct: 226 SGDTAVGHALAYCLAVEEATATAVPEPARRARALLLELERLHNHVADLGALCNDVGHGIL 285
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
RE+L+ + +G R+ PGG P+ + + DI
Sbjct: 286 NAQAQRVREQLLRLNQEVTGHRLLRGGVIPGGAAVRALPD-----PARIRAIGDDIRDIV 340
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
L G+ + R + A G G + R SG D R++ P+ Y + +P
Sbjct: 341 ALALGHSTVRDRFTGAARLDGRAARDLGCLGYVARASGVRVDARQAHPFLDYGDA-LTVP 399
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
+ GD R+LVR E+ S+ + V +L G A +
Sbjct: 400 VHTSGDVLARFLVRADEIDVSLAL----VEKLAAGLTPGVTRAESGAGL----------- 444
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
G VE +G + R K+ P + + A+
Sbjct: 445 ------------------GSGVGIVEGWRGTITTRVELAPDRALARVKVVDPSFFNWPAL 486
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVD 395
+ D S ++ + D
Sbjct: 487 PIALADTIVPDFPLTNKSFNLSYAGND 513
>gi|296136160|ref|YP_003643402.1| hypothetical protein Tint_1702 [Thiomonas intermedia K12]
gi|295796282|gb|ADG31072.1| hypothetical protein Tint_1702 [Thiomonas intermedia K12]
Length = 532
Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats.
Identities = 92/387 (23%), Positives = 154/387 (39%), Gaps = 33/387 (8%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
+ FGP + + GE + P + HR E + T +R+
Sbjct: 178 LPFGPVRADIVESAQFLFFYIGEGILHYHPRLFYKHRAMEGRFQGATLATGAVLAERVSG 237
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ + A+A AVE +G P R + +RV+ +E+ R+ +HL + +
Sbjct: 238 IDSVAHALAFAQAVEGAMGWRAPPRARYLRVVLAELERLYNHLHYLGHLSKTTTLKVGEA 297
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
G E++ R +GSR PGG+ +D+ ++ DS ++
Sbjct: 298 EGHLLEERVKQINGRLTGSRFLRGLITPGGLRRDLDITGLDK---ALDSVNDEIDRYLQR 354
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
L R R + G ++ + A+ G G + R S DLR+ PY Y ++ F +P+
Sbjct: 355 LENTRSHLDRLMTTGRLERQVAFDQGACGPIERASNLDRDLRRDHPYANYEKVRFSVPVQ 414
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
+ GD + R +VRM E+RES+ IIRQ + G+ K G V D ME
Sbjct: 415 QGGDAHARSMVRMEEIRESLAIIRQTI----GRTKPGEVLRFDV-------------MED 457
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLI-SDGGNKPYRCKIRAPGYAHLQAME 369
P GE VEA +G + S+ + R KI+ P +++ +
Sbjct: 458 AD------------PQGEGLGWVEATRGGLLYAVHLSEDRTRLQRVKIKEPSFSNWRVFP 505
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVDR 396
F + + D + S + DR
Sbjct: 506 FTVEDSNMMDYAINEASFGLSIAGADR 532
>gi|218662329|ref|ZP_03518259.1| NADH-ubiquinone oxidoreductase protein, chain D [Rhizobium etli
IE4771]
Length = 210
Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats.
Identities = 98/213 (46%), Positives = 129/213 (60%), Gaps = 5/213 (2%)
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ D LL NR+F R IG + EDA G SG +R SG WD+R+ +PYE Y L
Sbjct: 1 IRDYERLLEDNRVFLNRTKGIGVISAEDAVDLGLSGPNLRASGVDWDIRRDEPYEIYDRL 60
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK-RA 302
DF++ GDCY R+ R+ EMRES+ II QC++++ G P I P +
Sbjct: 61 DFNVITRDEGDCYARWRCRVDEMRESIGIIEQCIDQM----PEGRFQIDMPTIAFPLDKD 116
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ SME+LI HF L G+ VP GEVY+A+EAPKGE G Y+ISDG KP+R K+RAP +
Sbjct: 117 RVHCSMEALIQHFDLSAYGFKVPKGEVYSAIEAPKGELGFYIISDGSPKPFRMKVRAPSF 176
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+LQA+ + LAD+ A+LGSLD V EVD
Sbjct: 177 VNLQALSGVTNARYLADMIAVLGSLDPVMAEVD 209
>gi|72055530|ref|XP_795363.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus
purpuratus]
gi|115705536|ref|XP_001203667.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus
purpuratus]
Length = 200
Score = 213 bits (543), Expect = 4e-53, Method: Composition-based stats.
Identities = 107/189 (56%), Positives = 140/189 (74%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ +K + INFGPQHPAAHGVLRL+LEL GE + R DPHIGLLHRGTEKLIE KT++Q
Sbjct: 12 IAEKDVANLVINFGPQHPAAHGVLRLVLELSGESIVRCDPHIGLLHRGTEKLIEYKTYMQ 71
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+ M E AY+LAVEK+L I +P R + IRV+ E+ RI +H++ V T A
Sbjct: 72 ALPYFDRLDYVSMMCNEQAYSLAVEKMLNITVPERAKYIRVMMGELTRIANHIMAVGTHA 131
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+D+GA+TP W FEEREK YER G+RMHAAY RPGGV QD+P ++D+ + +F
Sbjct: 132 LDIGAMTPFFWLFEEREKTFELYERVCGARMHAAYVRPGGVSQDLPLGFLDDMYDFIKNF 191
Query: 181 PSALNDISD 189
++++ +
Sbjct: 192 SIRIDELDE 200
>gi|320450491|ref|YP_004202587.1| hydrogenase-4 subunit G [Thermus scotoductus SA-01]
gi|320150660|gb|ADW22038.1| hydrogenase-4, subunit G [Thermus scotoductus SA-01]
Length = 443
Score = 213 bits (542), Expect = 4e-53, Method: Composition-based stats.
Identities = 90/386 (23%), Positives = 138/386 (35%), Gaps = 44/386 (11%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ GP H + GE + ++ +G HRG L+ K A+ +R
Sbjct: 101 EVPVGPVHAGIIEPGHFRFSVLGERIVNLEIRLGYQHRGLLSLMPGKGAEAALLLVER-A 159
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
P+ A+A A E+ LG E P R Q +R E+ R HL ++ D+G
Sbjct: 160 GSEPVAHAMAFAEAWERALGWEAPSRAQHLRRAALELERAFGHLGHLAGLFTDIGYAYGA 219
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
R L +R +G R + R GGV ++ P+ ++ L +
Sbjct: 220 TQVGRIRALLQGELDRLTGHRYGRNFLRVGGVWREGQPD-----LEAIAAYREELARLLP 274
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
L N R +G V+ +A GF G R SG DLR+ P DF +
Sbjct: 275 RLLKNPQVLDRMRYVGEVRRAEALALGFVGPTARASGVGRDLRQDDP----LYPDFTPVV 330
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
+ GD R V ES+K + + L GP++ P
Sbjct: 331 RQGGDVLSRAQVYAE---ESLKALDYAL-FFLRHLPAGPLALDPPLG------------- 373
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
GE A VEA +GE V+ + K + P + + +A+E
Sbjct: 374 ----------------EGEALARVEAGRGE-VVWFVRVEAGKVVMAEGVDPSFKNWRALE 416
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
+G L D S D+ + D
Sbjct: 417 LAVRGEGLPDFPLCNKSFDLSYAGSD 442
>gi|182414282|ref|YP_001819348.1| NADH-ubiquinone oxidoreductase chain 49kDa [Opitutus terrae PB90-1]
gi|177841496|gb|ACB75748.1| NADH-ubiquinone oxidoreductase chain 49kDa [Opitutus terrae PB90-1]
Length = 499
Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats.
Identities = 76/386 (19%), Positives = 129/386 (33%), Gaps = 31/386 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ GP H + GE V ++ +G HRG E + + +
Sbjct: 144 EVAVGPVHAGIIEPGHFRFQCAGEEVLHLEIALGYQHRGIEAALVGGPHPRTELQMQVVA 203
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
A + A+AL E L G E P+R Q +R + E+ R+ +H ++ A DV L
Sbjct: 204 GDASIAHSTAHALVSEVLAGSEAPLRAQWLRAIALELERLANHTGDLGALANDVAFLPTS 263
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ R + G+R RPGG ++ P + + + +
Sbjct: 264 SACGKIRGDFLNLTALICGNRFGRGLVRPGGCRYELDPARLGQLRERLKTALDDVEAALG 323
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
L + R ++G V E A G G R SG D+R P + + +
Sbjct: 324 WLWDAASVRARFEDVGVVSDEQAAEIGLVGPAARASGLVRDVRYDHPAGWHRFAQMPVAV 383
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD R VR +E++ S I + + V + A +
Sbjct: 384 WPGGDVLARARVRALEIQRSGAFILEQLGGAPEGELVATLDAPAADTLS----------- 432
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
A VE +GE ++D + KI P + + M
Sbjct: 433 --------------------VALVEGWRGEVCHVALTDVARRFRCYKIVDPSFHNWTGMA 472
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
+G ++D S ++ + D
Sbjct: 473 LALRGQAISDFPICNKSFNLSYCGFD 498
>gi|224372781|ref|YP_002607153.1| hydrogenase-3, subunit E [Nautilia profundicola AmH]
gi|223588597|gb|ACM92333.1| hydrogenase-3, subunit E [Nautilia profundicola AmH]
Length = 454
Score = 212 bits (539), Expect = 1e-52, Method: Composition-based stats.
Identities = 74/395 (18%), Positives = 142/395 (35%), Gaps = 46/395 (11%)
Query: 2 DKKKSRS-FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
++ + + F + GP H GE + ++ +RG EK++E K +
Sbjct: 104 EEIEGDNVFVVPVGPIHAGIIEPGHFQFSQAGEEILHLEVRHYYKYRGIEKMVEGKKVNE 163
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+R+ + + A+ + + IEIP + E+ RI+ HL ++
Sbjct: 164 IKKIVERISGNESIAYQIAFMDILSQASEIEIPNSLKQKYFTLLELERIIHHLTDLGFIP 223
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D G + + E+ + +G R ++ +++ + D
Sbjct: 224 NDAGFGAALAFMSKLTEEARRVMAKITGHRFGFGAI------KEEVEIDYQELTKFIDYL 277
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ D + R G + + A +G GV R SG D+R + Y
Sbjct: 278 KKEVEFFEDWINDIASLWDRFNTTGALSRQKAAKYGVVGVTARASGVELDVRNN---LFY 334
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+ + +GK G+ DR+ VR+ E+ S+++I+
Sbjct: 335 KNFGYKMQLGKKGEVSDRFRVRIKEVLNSIEMIKNF------------------------ 370
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ D K + +++ FK GE + VE+ GE +Y+ R +R P
Sbjct: 371 KTDKKEKL--MLNEFK---------DGEYMSFVESSIGELFMYMKIK-DGVVDRFYVRDP 418
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ + QA +AD I S D+ + D
Sbjct: 419 SHINWQAFHTTIYKDIIADFPLINKSFDLSYAGND 453
>gi|261856377|ref|YP_003263660.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Halothiobacillus
neapolitanus c2]
gi|261836846|gb|ACX96613.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Halothiobacillus
neapolitanus c2]
Length = 518
Score = 212 bits (539), Expect = 1e-52, Method: Composition-based stats.
Identities = 90/387 (23%), Positives = 148/387 (38%), Gaps = 33/387 (8%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
+ FGP + + GE + P + HR E E A +R+
Sbjct: 164 LPFGPIRADVVESAQFVFHYIGEGILHYHPRLFYKHRAMEARFEGVPISAACVLAERVSG 223
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
V + A++ A+E LG + P+R Q RV+ +E+ R+ +HL A
Sbjct: 224 VDSVAHVLAFSQAMEAALGWQAPLRAQAWRVVLAELERLYNHLQFFGHLAKTTTLKVAEA 283
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
G E++ R +GSR PGG+ +D+ + ++ + D D
Sbjct: 284 EGIWLEEQVKQINGRLTGSRFLRGVIVPGGLRRDLDAT---ALIADLNALQPQIEDYLDT 340
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
L R + R + G + + A+ G +G + R S DLR+ Y Y EL F +P
Sbjct: 341 LANTRSYLDRLLTTGVLPRQVAFDQGATGPIERASDLDRDLRRDHGYALYPELQFAVPTA 400
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
GD R VR E+R+S+ +IRQ +N+L + GP+ ++ I PP
Sbjct: 401 TEGDADARARVRDQEIRQSLHLIRQALNKL----EPGPICRTESTIDPPM---------- 446
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGN-KPYRCKIRAPGYAHLQAME 369
G EA +G + D + R KI+ P +++ +
Sbjct: 447 ---------------EGMGLGWAEAVRGGLIYAVHWDAKTERLTRVKIKEPSFSNWRVFP 491
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVDR 396
F + D + S + DR
Sbjct: 492 FTVNDSNMMDYAINEASFGLSVAGADR 518
>gi|183221788|ref|YP_001839784.1| hydrogenase-4 subunit E [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
gi|189911862|ref|YP_001963417.1| metal (Ni/Fe) hydrogenase large subunit [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167776538|gb|ABZ94839.1| Metal (Ni/Fe) hydrogenase, large subunit [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
gi|167780210|gb|ABZ98508.1| Hydrogenase-4 subunit E [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
Length = 475
Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats.
Identities = 79/395 (20%), Positives = 146/395 (36%), Gaps = 27/395 (6%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
++ GP H +DGE++ + +G RG + K Q +PY
Sbjct: 102 DGEYSHAVGPIHAGIIEPGHFRFIVDGEVIRHLTIRLGFQKRGIRDHLLHKAMNQVMPYS 161
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
+ + + A++ E L I + +L R + E+ RI H+ ++ + D+G
Sbjct: 162 EMISGDTSVGYALAFSKIYEDLYEIPVSKEIRLFRSILLELERIAVHIGDLGGISEDIGY 221
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIP---PELVEDIGCWCDSFPS 182
ER + E +G R + RPG ++ + + E +++
Sbjct: 222 YPLYGVCVTERGAALGLMEAWTGHRFGKSVVRPGRLYLNNRLNAKQAKESFKQLKNAYIK 281
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLR-KSQPYECYS 241
+ K+R G + D +GF G++ R +G DLR ++ Y ++
Sbjct: 282 KIRPQILRALSISTLKERMQGCGFISEMDVQNFGFVGMVARMAGVNEDLRIENFDYPNWN 341
Query: 242 ELD-FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
L + +GD + R +R E+ +S+ I + + + +PK+ P
Sbjct: 342 PLPLKEEHHHYNGDVWARMYIRYSEIEQSMDWIEKTMEEINWDL------LWEPKVKVPN 395
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ + G Y+AVEA +G V L D IR P
Sbjct: 396 QEIL----------------TKRTKPGFYYSAVEAWRGPLLVALQFDENGLVNNSYIRDP 439
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ A+E +G Q+AD S ++ + D
Sbjct: 440 SVLNWHALELAVRGEQVADFPLNNKSFNLSYVGFD 474
>gi|149040659|gb|EDL94616.1| rCG20129, isoform CRA_a [Rattus norvegicus]
Length = 279
Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats.
Identities = 119/190 (62%), Positives = 150/190 (78%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ +K + T+NFGPQHPAAHGVLRL+LEL GE+V + DPHIGLLHRGTEKLIE KT+LQ
Sbjct: 72 LKEKVVTNVTLNFGPQHPAAHGVLRLVLELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQ 131
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+ M E AY+LAVEKLL I+ P R Q IRVL+ EI RIL+H++ VTT A
Sbjct: 132 ALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRILNHIMAVTTHA 191
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+D+GA+TP W FEEREK+ FYER SG+RMHAAY RPGGVHQD+P L++DI + +F
Sbjct: 192 LDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYEFSKNF 251
Query: 181 PSALNDISDL 190
++++ +
Sbjct: 252 SLRIDEVEEW 261
>gi|165940634|gb|ABY75252.1| HysB [Desulfovibrio vulgaris str. 'Miyazaki F']
Length = 510
Score = 210 bits (535), Expect = 3e-52, Method: Composition-based stats.
Identities = 64/469 (13%), Positives = 122/469 (26%), Gaps = 96/469 (20%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L+ + ++ +V G ++RG E ++ + A R+ V P A
Sbjct: 27 IEGHLKAEVTVENGVVVDARLSGG-MYRGFETILRGRDPRDASQIVQRICGVCPTAHSTA 85
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG--------------- 124
+A++ +++P G+L R L + SH+L+ A
Sbjct: 86 SCMALDNAFKVKVPTNGRLTRNLTFGANYLQSHILHFYHLAALDFVQGPDSAPFVPRFAK 145
Query: 125 ------------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVED 172
A+ L E R G H GG + E + +
Sbjct: 146 PDLRLPKDINAAAVDQYLEALEVRRICHEMVAMFGGRMPHVQGQVVGGTTEIPTKEALVE 205
Query: 173 IGCWCDSFPSALN------------DISDLLTGNRIFKQRN-VNIGTVKLEDAWGWGFSG 219
+ DL + +K + G
Sbjct: 206 YAARFKKVREFVEKKYVPVAYTVGAAYKDLFKFGQGYKNCISFGAFPLNDAMTELHLKRG 265
Query: 220 VMIRGSGAAWDLRKSQPYECYSELD-------------FDIPIGKHGDCYDRYLVRMMEM 266
V I G +D + + Y YS D P + + +
Sbjct: 266 VYIDGKDQPFDPKLIKEYVKYSWFDDATTGLHFSQGKTVPAPNKAGAYSFVKAPRYNGKA 325
Query: 267 RESVKIIRQCVNRLLGKNKVGPVSASDPKI--------------------------VPPK 300
ES + R + + K+
Sbjct: 326 VESGPVARMWITNPELSPVGQKLLKDLFKLNAKRFRDLGDEAAFSVMGRHVARAEETYYM 385
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ ++R ++ + + + E EAP+G Y+ K +I +
Sbjct: 386 LSAIERWLKEVKAGEETFAAAEIPASSEGVGFTEAPRGSLVHYINIK-DQKIDNYQIVSA 444
Query: 361 GYAH---------LQAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
+ L +E G + D V+ ++ + D G
Sbjct: 445 TLWNCNPRDDSGQLGPVERALVGTPVPDISNPVNVARVIRAFDPULGCA 493
>gi|260893095|ref|YP_003239192.1| nickel-dependent hydrogenase large subunit [Ammonifex degensii KC4]
gi|260865236|gb|ACX52342.1| nickel-dependent hydrogenase large subunit [Ammonifex degensii KC4]
Length = 458
Score = 210 bits (534), Expect = 4e-52, Method: Composition-based stats.
Identities = 64/448 (14%), Positives = 124/448 (27%), Gaps = 80/448 (17%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L++ +++DG V G L RG E +++ + A R+ V P+ A
Sbjct: 13 IEGHLKIEVDVDGGKVVDAR-SSGTLFRGFEIILQGRDPRDAQHITQRICGVCPIAHSMA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG--------------- 124
A ++ E+P G++ R L I SH+L+ T A
Sbjct: 72 SARCLDDAFKAEVPTNGRITRNLIQGANYIQSHILHFYTLAALDYVKGPDVPPFVPRYEG 131
Query: 125 -----------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDI 173
A+ L R K H PGG+ + + E ++
Sbjct: 132 DYRLPPEVNKAAVEHYLEALNMRRKAQEMLAIYGAKMPHITVIIPGGITEKVTKESIDQF 191
Query: 174 GCWCDSFPSALNDIS--DLLTGNRIFKQRNV-------NIGTVKLEDAWGWGFSGVMIRG 224
+ ++++ D++ ++K + +G +
Sbjct: 192 RSYLKELIDFIDNVYVPDVIAIGEVYKDYYDIGRGYQNALAFGIFPLTDEPDPTGQKMLI 251
Query: 225 SGAAWDLRKSQP-----------YECYSEL----------DFDIPIGKHGDCYDRYLVRM 263
A+ K P Y Y P + +
Sbjct: 252 KRGAYANGKFIPVDPAKITEDVKYSWYRNDTSGLNPAEGKTEPQPRKAEAYSWIKAPRYQ 311
Query: 264 MEMRESVKIIRQCVNRLLGKNKVGP-----VSASDPKIVPPKR--ADMKRSMESLIHHFK 316
E + R VNR+ +G + + + + M ++ L
Sbjct: 312 GYPVEVGPLARMWVNRVPEVYSLGEKAFSTMGRHLARAIECRMVAHAMVEWLDQLRPGEP 371
Query: 317 LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------A 367
EAP+G G ++ + ++ + +
Sbjct: 372 TMKPCEVPREARGMGLWEAPRGAIGHWIEIK-DYRIRNYQVVSATIWNASPRDDKGQRGP 430
Query: 368 MEFLCKGHQLAD------VSAILGSLDI 389
+E G + D V ++ S D
Sbjct: 431 IEQALVGTPVKDLENPIEVVRVIRSFDP 458
>gi|162453073|ref|YP_001615440.1| NAD-dependent dehydrogenase subunit [Sorangium cellulosum 'So ce
56']
gi|161163655|emb|CAN94960.1| NAD-dependent dehydrogenase subunit [Sorangium cellulosum 'So ce
56']
Length = 495
Score = 210 bits (534), Expect = 4e-52, Method: Composition-based stats.
Identities = 84/386 (21%), Positives = 139/386 (36%), Gaps = 30/386 (7%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ GP H GE V ++ H+G HRG E+ + + P + +
Sbjct: 139 EVAVGPIHAGVIEPGSFRFMCLGEQVHHLEIHLGYQHRGVERRLLERDPRSLTPLIETIA 198
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ A+ A+E L G + I +L R + E+ R+ HL + A DVG L
Sbjct: 199 GDTSVAHAWAHCSALESLAGCRLDIEIELARAVALELERVAMHLSTLAGMAADVGFLQGA 258
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
R + R GSR RPGGV +PPE + DI D + L I+D
Sbjct: 259 TTYGRLRTTAINTMMRLCGSRFGKGALRPGGVRMRLPPEALPDIRANLDLLQADLPIIND 318
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
R + R + GT+ A G G+ R SG D R + YS + +
Sbjct: 319 CFLMARTVQHRLRSTGTLTTAQARELGLVGLAARASGIELDARHLVEHGAYSVVPIQPVV 378
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GDC+ R +R+ E+ S+ + + + P
Sbjct: 379 LPDGDCWARARIRIAEIEASLSWVSAVIALYANWERPRP--------------------- 417
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
+ G P + VE +GE + + + K++ P + +
Sbjct: 418 ---------SIGELAPDQLAISLVEGFRGEVVHCVETGAHGEVVHYKVQDPSLRNWMGLA 468
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
+G++++D S D+ + D
Sbjct: 469 LAVRGNEISDFPICNKSFDLSYCGND 494
>gi|256113340|ref|ZP_05454198.1| NADH dehydrogenase subunit D [Brucella melitensis bv. 3 str. Ether]
gi|265994746|ref|ZP_06107303.1| NADH-quinone oxidoreductase subunit D [Brucella melitensis bv. 3
str. Ether]
gi|262765859|gb|EEZ11648.1| NADH-quinone oxidoreductase subunit D [Brucella melitensis bv. 3
str. Ether]
Length = 151
Score = 209 bits (533), Expect = 4e-52, Method: Composition-based stats.
Identities = 125/151 (82%), Positives = 141/151 (93%)
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
DIP+GK+GDCYDRYL+RM EMR+S +I+RQCV+ LLGK +VGPVS +D KIVPPKR +MK
Sbjct: 1 DIPVGKNGDCYDRYLIRMEEMRQSARIMRQCVDLLLGKERVGPVSNTDHKIVPPKRGEMK 60
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
RSME+LIHHFKLYTEGYHVP GEVYAAVEAPKGEFGVYL+SDG NKPYRCK+RAPG+AHL
Sbjct: 61 RSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYLVSDGSNKPYRCKLRAPGFAHL 120
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
QAM+FLC+GH LADVSAILGSLDIVFGEVDR
Sbjct: 121 QAMDFLCRGHMLADVSAILGSLDIVFGEVDR 151
>gi|213023905|ref|ZP_03338352.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Typhi str. 404ty]
Length = 260
Score = 209 bits (532), Expect = 6e-52, Method: Composition-based stats.
Identities = 98/263 (37%), Positives = 151/263 (57%), Gaps = 5/263 (1%)
Query: 40 PHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLI 99
P IG HRG EK+ E +++ +PY DR++Y+ E Y LAVEKL GI +P R +I
Sbjct: 2 PDIGYHHRGAEKMGERQSWHSYIPYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVI 61
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
RV+ SE+ RI SHLL ++T DVGA+TP + F +R+K+ E +G RMH A+FR G
Sbjct: 62 RVMLSELFRINSHLLYISTFIQDVGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIG 121
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
GV D+P + + + P L+ N I K R+ + ++A WG +G
Sbjct: 122 GVAHDLPRGWDRLLREFLEWMPKRLDSYEKAALRNTILKGRSQGVAAYGAKEALEWGTTG 181
Query: 220 VMIRGSGAAWDLRKSQPYECYSELDFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
+R +G +D+RK +PY Y DF++P+ G DCY R ++++ E+R+S++I++QC++
Sbjct: 182 AGLRATGIDFDVRKWRPYSGYENFDFEVPVGGGVSDCYTRVMLKVEELRQSLRILQQCLD 241
Query: 279 RLLGKNKVGPVSASDPKIVPPKR 301
+ GP A P PP +
Sbjct: 242 NM----PEGPFKADHPLTTPPPK 260
>gi|311294655|gb|ADP88936.1| NADH dehydrogenase subunit 7 [Diplonema papillatum]
Length = 393
Score = 209 bits (531), Expect = 8e-52, Method: Composition-based stats.
Identities = 133/385 (34%), Positives = 199/385 (51%), Gaps = 16/385 (4%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
++FGP HPAAHGVLR +L L E + +GLLHRGTEKL+E + +Q + Y DRLDY
Sbjct: 24 LSFGPAHPAAHGVLRCVLFLRSEWITGSSMTLGLLHRGTEKLMELRHPMQTIGYMDRLDY 83
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
V+ ++ E Y +E++L +++ + GQLIRVL E+ R+ +HLLN+ A DVG L L
Sbjct: 84 VSMLSTEVCYVECLEEVLHVDVAMEGQLIRVLLQEVTRVANHLLNIACHAGDVGCLVALL 143
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
W FE+RE L SG+RMHA+ PGG I + S ++ +
Sbjct: 144 WLFEDRELLHELLATWSGARMHASSVVPGGTRCSIRSTTLVTCTELLQHLSSRMDVLLAT 203
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
+ +R++ R +G + + G G SGV++R +GA+WDLR P + YS +P+G
Sbjct: 204 VMVHRVWAARLSGVGVLTV-GVDGSGASGVLLRSAGASWDLRLIAPPQAYSCTVLSVPVG 262
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
+GD DR L+RM+E+ S ++ Q L + S + + M M +
Sbjct: 263 TYGDSMDRVLIRMLELLTSSSVVIQLTALLSTVHAGTTTSYASMGLQSVLAVFMAYRMTA 322
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
+ AVE PKGE + L + +RC++R HL +
Sbjct: 323 TTS--------------QGIHAVEGPKGELHISLTVTNSSM-WRCRVRPADLGHLLGLHA 367
Query: 371 LCKGHQLADVSAILGSLDIVFGEVD 395
L G LAD ++G++D+VFG VD
Sbjct: 368 LMLGTSLADAVMLIGTVDVVFGAVD 392
>gi|326200939|ref|ZP_08190811.1| nickel-dependent hydrogenase large subunit [Clostridium
papyrosolvens DSM 2782]
gi|325988507|gb|EGD49331.1| nickel-dependent hydrogenase large subunit [Clostridium
papyrosolvens DSM 2782]
Length = 470
Score = 209 bits (531), Expect = 8e-52, Method: Composition-based stats.
Identities = 62/459 (13%), Positives = 120/459 (26%), Gaps = 77/459 (16%)
Query: 6 SRSFTINFGPQHPAAH--GVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
++ IN P G + + +D V V GLL RG EK++E + AV
Sbjct: 2 TKRIVIN-----PVTRISGFMEIDATIDNNAVTDVKTE-GLLFRGFEKMLEGRNPFDAVY 55
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+ R+ + A +A+E +GI +G+ +R + + +H+ + +
Sbjct: 56 FTQRICGICSTAHSVAATMALESAMGIVPGEQGRYLRDILHGCEFLQNHIRHFYQYTIPD 115
Query: 124 GALTPPLWGFEEREK--------------------------LMVFYERASGSRMHAAYFR 157
P + E G H
Sbjct: 116 FVRLPDKYPLYVTEHNDFRLPEGKNENIVKNYFLSLDISRSAHEMLAVLGGKAPHNHGVF 175
Query: 158 PGGVHQDIPPELVEDIGCWCDSFPSALN-----------DISDLLTGNRIFKQRNVNIGT 206
GG+ + + I S + N ++ G
Sbjct: 176 IGGITTQATTDKIIKIKSILLSIRQFIENRMIPDAYTIAGYYKDYFKNGRGYGNLLSYGC 235
Query: 207 VKLEDAWGWGFSGVMIRGSG---------------AAWDLRKSQPYECYSELDFDIPIGK 251
G + ++ G +W ++ Y+
Sbjct: 236 FNKYTELGTLYVDPLVYTQGNISVFNPDEITQEIDYSWYKSQTNEYKPTGATAEADMDKS 295
Query: 252 HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD-MKRSMES 310
+ + E + RQ ++ + K A+ M +E+
Sbjct: 296 KAYSWVKAPRYRGIPYEVGPLARQWLSGEYRNGISTMDRTIARVLEARKIAEVMGILIEN 355
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA--- 367
LI + + E ++ +G G +L R ++ P +L A
Sbjct: 356 LIPGVSVQKQYTIPDASEGAGLIDTTRGALGHWLKI-ENGNISRYQLITPSGWNLSARGN 414
Query: 368 ------MEFLCKGHQLADV------SAILGSLDIVFGEV 394
E ++ D I+ S D
Sbjct: 415 NNLRGTAEQALMNTKITDFDNPVELGRIIRSFDPCVSCA 453
>gi|156742700|ref|YP_001432829.1| NADH-ubiquinone oxidoreductase chain 49kDa [Roseiflexus
castenholzii DSM 13941]
gi|156234028|gb|ABU58811.1| NADH-ubiquinone oxidoreductase chain 49kDa [Roseiflexus
castenholzii DSM 13941]
Length = 358
Score = 209 bits (531), Expect = 8e-52, Method: Composition-based stats.
Identities = 94/389 (24%), Positives = 148/389 (38%), Gaps = 34/389 (8%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHR-GTEKLIETKTFLQAVPYFD 66
+++ GP HPA G R +L + G+ V V+ G R E+L +
Sbjct: 2 PYSLTLGPFHPAWLGPQRFVLRIAGDRVVDVEYQSGFNERKCAERLS-RLPLPDVLHLVA 60
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+ A+ A+E+L +I R LIRV+ +E+ R SHL +G
Sbjct: 61 RICGECSFAHSLAFCQALERLYPYDIGARAALIRVVAAELERAASHLRAAGAVLAAIGMD 120
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
+ + +G R+ PGG+ +D+ +D+ + L
Sbjct: 121 QRGAHLETLSRQFREMLAQVTGGRVPPPVCAPGGLLRDLSSSDRDDLLAMLPGISTDLYR 180
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
D L R+ R + +G + A +G G M R SG D+R QPY Y+ L F
Sbjct: 181 FIDRLIDQRLLLARTIEVGMLPRTAAEQFGVRGPMARASGIRRDVRADQPYAAYAMLAFK 240
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ + GD Y R LV ++E ES K++ + L ++ V + +
Sbjct: 241 PIVQEGGDVYARLLVFLLEAYESTKLVETALQHLPAEDPVVALPHEISR----------- 289
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
G+ AAVE P+G + SDG + R +I P
Sbjct: 290 --------------------GQSSAAVEGPRGAIRYLIESDG-LRLTRVQIDTPRQCDRL 328
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ QL DV AI+ SL I +
Sbjct: 329 LARTVLSRAQLDDVMAIVASLAICVACAE 357
>gi|237800543|ref|ZP_04589004.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas syringae pv. oryzae str. 1_6]
gi|331023403|gb|EGI03460.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas syringae pv. oryzae str. 1_6]
Length = 431
Score = 209 bits (531), Expect = 9e-52, Method: Composition-based stats.
Identities = 84/227 (37%), Positives = 129/227 (56%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +P
Sbjct: 205 QNEDYMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMAERQSWHSFIP 264
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ + Y L+VEKL GI++P + +IR++ +E RI SHLL + T DV
Sbjct: 265 YTDRIDYLGGVMNNLPYVLSVEKLAGIKVPEKVDVIRIMMAEFFRITSHLLFLGTYIQDV 324
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+TP + F +R+K E +G R+H A++R GGV D+P + + + D P
Sbjct: 325 GAMTPVFFTFTDRQKAYTVIEAITGFRLHPAWYRIGGVAHDLPRGWEKLVKDFVDWLPKR 384
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWD 230
L++ + N I K R V + ++A WG +G +R +G +D
Sbjct: 385 LDEYTKAALQNSILKGRTVGVAAYNTKEALEWGVTGAGLRSTGCDFD 431
>gi|224368281|ref|YP_002602444.1| HysA [Desulfobacterium autotrophicum HRM2]
gi|223690997|gb|ACN14280.1| HysA [Desulfobacterium autotrophicum HRM2]
Length = 504
Score = 209 bits (531), Expect = 9e-52, Method: Composition-based stats.
Identities = 67/461 (14%), Positives = 124/461 (26%), Gaps = 88/461 (19%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L++ +E+ G V G + RG E ++ + A R+ V P A
Sbjct: 28 IEGHLKVEVEVKGGKVVDARC-FGGMFRGFENILTGRDPRDATQIVQRICGVCPTAHATA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP----------- 128
+LA++ G+++ G++ R L + SH+L+ A P
Sbjct: 87 SSLALDDAFGVKLTNNGRVARNLILGANFLQSHILHFYHLAALDYVNGPEVAPFIPRYKN 146
Query: 129 ----------------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVED 172
L E R+ G H GG + E ++
Sbjct: 147 NDVRLDKATNQVGVDQYLEALEIRKICHEMVALLGGKMPHVQGIVVGGTTEIPTREKLDA 206
Query: 173 IGCWCDSFPSALND------------ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGV 220
+ + + DLL +K + SGV
Sbjct: 207 YKERFKTVRKFIEERYLPLIYLLAGPYGDLLKTGTGYKNCIAFGVFPLDDAGNTLLKSGV 266
Query: 221 MIRGSGAAWDLRKSQPY-------------ECYSELDFDIPIGKHGDCYDRYLVRMMEMR 267
G ++ + Y P G + + +
Sbjct: 267 FTDGKYTDFNSDNIKEYVKHSFFADNTTGLHPSKGKTVPDPEKATGYSFIKSPRYNGKPH 326
Query: 268 ESVKIIRQCV---------NRLLGKNKVGPVSASDPKIVPPKRAD----------MKRSM 308
E + R + + LG ++ + + I+ A M+R +
Sbjct: 327 EVGPLARMWITNPELSATGQKALGVKRMRDIGDAAFSILGRHIARAEETLLVAMQMERWL 386
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL--- 365
E + + E EAP+G Y+ + +I + +
Sbjct: 387 EEAKPGLETFVAAPIPENAEGIGLTEAPRGALLHYIDIK-NSVISNYQITSATIWNANPR 445
Query: 366 ------QAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
+E G + D V ++ S D G
Sbjct: 446 DDMEQRGPIEQALIGIPVPDIDSPVNVGRLIRSFDPULGCA 486
>gi|149040660|gb|EDL94617.1| rCG20129, isoform CRA_b [Rattus norvegicus]
Length = 252
Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats.
Identities = 119/190 (62%), Positives = 150/190 (78%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ +K + T+NFGPQHPAAHGVLRL+LEL GE+V + DPHIGLLHRGTEKLIE KT+LQ
Sbjct: 45 LKEKVVTNVTLNFGPQHPAAHGVLRLVLELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQ 104
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PYFDRLDYV+ M E AY+LAVEKLL I+ P R Q IRVL+ EI RIL+H++ VTT A
Sbjct: 105 ALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRILNHIMAVTTHA 164
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+D+GA+TP W FEEREK+ FYER SG+RMHAAY RPGGVHQD+P L++DI + +F
Sbjct: 165 LDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYEFSKNF 224
Query: 181 PSALNDISDL 190
++++ +
Sbjct: 225 SLRIDEVEEW 234
>gi|251772760|gb|EES53322.1| putative hydrogenase-3 subunit (HycE) [Leptospirillum
ferrodiazotrophum]
Length = 512
Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats.
Identities = 77/384 (20%), Positives = 131/384 (34%), Gaps = 33/384 (8%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H + GE V R++ +G H+G +L + +A R+
Sbjct: 157 EIPVGPVHAGIIEPGHFRFSVVGEKVLRLETRMGYTHKGIARLFRGRNLPEAARLASRIS 216
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + A++ AVE+ L IEI + +R + E RI +HL ++ D G
Sbjct: 217 GDSAVATSLAFSKAVEEALDIEISEGVRFVRAILLERERIANHLADLGALGNDAGLAVAL 276
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
RE + G R+ PGGV + ++E + + + ++ +
Sbjct: 277 SLFHPLREAMHRINLSLFGHRLLFDSVVPGGVSTGLSGAMIETLLLENERLQAEVSLLER 336
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + + R N G + E A G GV R SG WDLR + + +
Sbjct: 337 IYADHGGLQDRFQNTGILSPEVAGRLGIGGVAGRASGQGWDLRVDHREDPVHRFAPALAL 396
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD R +R E+ ES+++ + G + +
Sbjct: 397 DHIGDVASRVRIRFFEIFESLRLTHALLTSFPGPDICATI-------------------- 436
Query: 310 SLIHHFKLYTEGYHVPV-GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
P E VE +GE ++ G I A+
Sbjct: 437 ------------PDPPAPREGAGIVEGFRGEVLGWVRILPGKILADAHIADGSPLLWHAL 484
Query: 369 EFLCKGHQLADVSAILGSLDIVFG 392
E G+ +AD I S + +
Sbjct: 485 EASVPGNLVADFPLINKSFNPSYS 508
>gi|295791969|gb|ADG28982.1| NADH-plastoquinone oxidoreductase subunit 7 [Osmundastrum
cinnamomeum]
Length = 270
Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats.
Identities = 108/275 (39%), Positives = 146/275 (53%), Gaps = 5/275 (1%)
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+PY R DY+A M E A E+L I+IP R IR++ E+ RI SHLL +
Sbjct: 1 LPYVTRWDYLATMFTEAVTVNAPERLANIQIPKRASYIRMIMPELSRIASHLLWLGPFMA 60
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
DVGA TP + F ERE + +E A+G RM YFR GGV D+P V+ C F
Sbjct: 61 DVGAQTPFFYIFREREMIYDLFEAATGMRMMHNYFRIGGVAVDLPYGWVDKCLDSCHYFL 120
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L+T N IF +R IG + E+A WG SG M+R SG WDLRK YECY
Sbjct: 121 PKVDEYEQLITNNPIFLERVEGIGVIGREEAINWGLSGPMLRASGVRWDLRKVDHYECYD 180
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
E D+ I K GD RY VR+ EMRESV II+Q + L G GP S+ + + +
Sbjct: 181 ESDWQIQWQKGGDSLARYSVRIGEMRESVGIIQQALKLLPG----GPYENSEARRLNQHK 236
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAP 336
+++ + K + + +P E Y +EAP
Sbjct: 237 -NVEWNDSDYRFIGKKSSPTFRLPKQEHYVRIEAP 270
>gi|5542158|pdb|1CC1|L Chain L, Crystal Structure Of A Reduced, Active Form Of The
Ni-Fe-Se Hydrogenase From Desulfomicrobium Baculatum
Length = 498
Score = 207 bits (528), Expect = 2e-51, Method: Composition-based stats.
Identities = 66/479 (13%), Positives = 125/479 (26%), Gaps = 108/479 (22%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L++ +E+ V G + RG E+++ + + R+ V P A
Sbjct: 22 VEGHLKIEVEVKDGKVVDAKCSGG-MFRGFEQILRGRDPRDSSQIVQRICGVCPTAHCTA 80
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP----------- 128
+A + G+++ G++ R L + SH+L+ A P
Sbjct: 81 SVMAQDDAFGVKVTTNGRITRNLIFGANYLQSHILHFYHLAALDYVKGPDVSPFVPRYAN 140
Query: 129 ------------------------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQD 164
L E R G H GG +
Sbjct: 141 ADLLTDRIKDGAKADATNTYGLNQYLKALEIRRICHEMVAMFGGRMPHVQGMVVGGATEI 200
Query: 165 IPPELVEDIGCWCDSFPSALND------------ISDLLTGNRIFKQRNVNIGTVKLEDA 212
+ V + + + +DL +K G +D
Sbjct: 201 PTADKVAEYAARFKEVQKFVIEEYLPLIYTLGSVYTDLFETGIGWKNVIA-FGVFPEDDD 259
Query: 213 WGWGFSGVMIRGSGAA--WDLRKSQPYECYSELDFDIPIGKHG--------------DCY 256
+ + G +D + + Y +S D P G H +
Sbjct: 260 YKTFLLKPGVYIDGKDEEFDSKLVKEYVGHSFFDHSAPGGLHYSVGETNPNPDKPGAYSF 319
Query: 257 DRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR--------------- 301
+ + E + R V + VG + + K+
Sbjct: 320 VKAPRYKDKPCEVGPLARMWVQN-PELSPVGQKLLKELYGIEAKKFRDLGDKAFSIMGRH 378
Query: 302 -----------ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGN 350
+++ ++ + + Y + E EAP+G YL
Sbjct: 379 VLRAEETWLTAVAVEKWLKQVQPGAETYVKSEIPDAAEGTGFTEAPRGALLHYLKIK-DK 437
Query: 351 KPYRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
K +I + + +E G + D V ++ S D G
Sbjct: 438 KIENYQIVSATLWNANPRDDMGQRGPIEEALIGVPVPDIKNPVNVGRLVRSYDPXLGCA 496
>gi|307721953|ref|YP_003893093.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Sulfurimonas
autotrophica DSM 16294]
gi|306980046|gb|ADN10081.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Sulfurimonas
autotrophica DSM 16294]
Length = 455
Score = 206 bits (525), Expect = 4e-51, Method: Composition-based stats.
Identities = 71/387 (18%), Positives = 129/387 (33%), Gaps = 44/387 (11%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
F ++ GP H GE + + +R EK++E KT L+A +R+
Sbjct: 112 FQVSVGPIHAGIIEPGHFHFSQAGEKMLHQEVRHFYKYRAVEKMLEGKTLLEAKSIIERI 171
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+ + + + ++P Q E+ RI+ HL ++ D G
Sbjct: 172 SGNESIAYQMCWRDILLHSSQQKLPQALQKRHAFLLELERIIHHLTDLGFIPNDAGFGAA 231
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
+G + E + +G R D + W DS ++
Sbjct: 232 LSFGSKLAEDARRKMKEITGHRFGFGGIDFVNKFVDT-----ASLHEWLDSMQESIEYFE 286
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
D + R G + L+ A + GV R SG A D R ++ Y + F++
Sbjct: 287 DWIIDIPSLWDRLDTTGVLPLKKAVKYDSVGVAARASGLAVDRRVNEFYLKHG---FELA 343
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
GD R+ VR+ E++ S+K++ +
Sbjct: 344 SELSGDVGARFKVRIAEVKNSLKMMHNFLEE----------------------------- 374
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
+ E V GE + E+ GE + + R +R + + Q +
Sbjct: 375 ------DETVLEPEAVKDGEYMSFTESSIGELFMAVDIK-DGVIERFFVRDASFMNWQVL 427
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVD 395
+ + +AD I S D+ + D
Sbjct: 428 HVMMRNDIIADFPLINKSCDLSYAGND 454
>gi|172045678|sp|P13065|PHSL_DESBA RecName: Full=Periplasmic [NiFeSe] hydrogenase large subunit;
AltName: Full=NiFeSe hydrogenlyase large chain
gi|7019628|gb|AAA23375.2| large hydrogenase subunit [Desulfomicrobium baculatum]
Length = 514
Score = 206 bits (525), Expect = 4e-51, Method: Composition-based stats.
Identities = 66/479 (13%), Positives = 125/479 (26%), Gaps = 108/479 (22%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L++ +E+ V G + RG E+++ + + R+ V P A
Sbjct: 23 VEGHLKIEVEVKDGKVVDAKCSGG-MFRGFEQILRGRDPRDSSQIVQRICGVCPTAHCTA 81
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP----------- 128
+A + G+++ G++ R L + SH+L+ A P
Sbjct: 82 SVMAQDDAFGVKVTTNGRITRNLIFGANYLQSHILHFYHLAALDYVKGPDVSPFVPRYAN 141
Query: 129 ------------------------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQD 164
L E R G H GG +
Sbjct: 142 ADLLTDRIKDGAKADATNTYGLNQYLKALEIRRICHEMVAMFGGRMPHVQGMVVGGATEI 201
Query: 165 IPPELVEDIGCWCDSFPSALND------------ISDLLTGNRIFKQRNVNIGTVKLEDA 212
+ V + + + +DL +K G +D
Sbjct: 202 PTADKVAEYAARFKEVQKFVIEEYLPLIYTLGSVYTDLFETGIGWKNVIA-FGVFPEDDD 260
Query: 213 WGWGFSGVMIRGSGAA--WDLRKSQPYECYSELDFDIPIGKHG--------------DCY 256
+ + G +D + + Y +S D P G H +
Sbjct: 261 YKTFLLKPGVYIDGKDEEFDSKLVKEYVGHSFFDHSAPGGLHYSVGETNPNPDKPGAYSF 320
Query: 257 DRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR--------------- 301
+ + E + R V + VG + + K+
Sbjct: 321 VKAPRYKDKPCEVGPLARMWVQN-PELSPVGQKLLKELYGIEAKKFRDLGDKAFSIMGRH 379
Query: 302 -----------ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGN 350
+++ ++ + + Y + E EAP+G YL
Sbjct: 380 VLVAEETWLTAVAVEKWLKQVQPGAETYVKSEIPDAAEGTGFTEAPRGALLHYLKIK-DK 438
Query: 351 KPYRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
K +I + + +E G + D V ++ S D G
Sbjct: 439 KIENYQIVSATLWNANPRDDMGQRGPIEEALIGVPVPDIKNPVNVGRLVRSYDPULGCA 497
>gi|296132286|ref|YP_003639533.1| nickel-dependent hydrogenase large subunit [Thermincola sp. JR]
gi|296030864|gb|ADG81632.1| nickel-dependent hydrogenase large subunit [Thermincola potens JR]
Length = 515
Score = 206 bits (524), Expect = 5e-51, Method: Composition-based stats.
Identities = 71/488 (14%), Positives = 121/488 (24%), Gaps = 115/488 (23%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + +E++G +V+ G L RG E + + K A R V P HA
Sbjct: 13 IEGHLAIEVEVEGGVVKDAKCK-GTLFRGLEIICQGKDPRDAAVLTSRSCGVCPAEHAHA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILS---HLLNVTTQAMDV------------- 123
++ G E+P G++IR L + I S H ++T
Sbjct: 72 SVQQLDMAFGAEVPDNGRIIRNLVAGSNFIASHILHFYHLTALDYLDIMAIAQYNGSDPA 131
Query: 124 --------------------------------------GALTPPLWGFEEREKLMVFYER 145
A+ + E R+K
Sbjct: 132 LLKVRDKVVALVKAGDTAPLTPRYNPDQFSVADPTVVTSAVHHYIQALEMRKKAQEMLAI 191
Query: 146 ASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN--DISDLL------TGNRIF 197
G H + GGV P+ + +N + D+L
Sbjct: 192 FGGKMPHHVTYVAGGVTIQPTPDRIAAFRSRLLELIDFINNVYLKDVLYFGTGPLKPLHD 251
Query: 198 KQRNVNIGTVKLEDAWGWGFSGVMIR-------------------GSGAAWDLRKSQPYE 238
+ G + G SG + K YE
Sbjct: 252 MKVGAGCGNFLSYGNFDLGKSGDFNNRFLKAGTIFNGDLTKVNPLDPDKIHEEVKYSWYE 311
Query: 239 -------CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCV----------NRLL 281
Y + + + E + RQ + N+L
Sbjct: 312 DTTTGKHPYEGETKPDAQKEGAYSWLKAPRYDGNPMEVGPLARQLITQEKGFMDLVNKLG 371
Query: 282 GKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFG 341
A+ M + + L + E G+ VEA +G G
Sbjct: 372 AWPSAVARHAARAWECKLIAEAMLKWVGELKPGEPVCNEKPVPEKGQGMGLVEAARGALG 431
Query: 342 VYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLAD------VSAILGS 386
+ + + ++ P + +E G + D + I+ S
Sbjct: 432 HFGVV-ENYRIKNYQLVVPTTWNCSPADDKGVKGPVEQALIGAPVPDPENPINLVRIVRS 490
Query: 387 LDIVFGEV 394
D
Sbjct: 491 FDPCIACA 498
>gi|218885377|ref|YP_002434698.1| nickel-dependent hydrogenase large subunit [Desulfovibrio vulgaris
str. 'Miyazaki F']
gi|218756331|gb|ACL07230.1| nickel-dependent hydrogenase large subunit [Desulfovibrio vulgaris
str. 'Miyazaki F']
Length = 488
Score = 206 bits (524), Expect = 6e-51, Method: Composition-based stats.
Identities = 63/464 (13%), Positives = 121/464 (26%), Gaps = 96/464 (20%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L+ + ++ +V G ++RG E ++ + A R+ V P A
Sbjct: 27 IEGHLKAEVTVENGVVVDARLSGG-MYRGFETILRGRDPRDASQIVQRICGVCPTAHSTA 85
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG--------------- 124
+A++ +++P G+L R L + SH+L+ A
Sbjct: 86 SCMALDNAFKVKVPTNGRLTRNLTFGANYLQSHILHFYHLAALDFVQGPDSAPFVPRFAK 145
Query: 125 ------------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVED 172
A+ L E R G H GG + E + +
Sbjct: 146 PDLRLPKDINAAAVDQYLEALEVRRICHEMVAMFGGRMPHVQGQVVGGTTEIPTKEALVE 205
Query: 173 IGCWCDSFPSALN------------DISDLLTGNRIFKQRN-VNIGTVKLEDAWGWGFSG 219
+ DL + +K + G
Sbjct: 206 YAARFKKVREFVEKKYVPVAYTVGAAYKDLFKFGQGYKNCISFGAFPLNDAMTELHLKRG 265
Query: 220 VMIRGSGAAWDLRKSQPYECYSELD-------------FDIPIGKHGDCYDRYLVRMMEM 266
V I G +D + + Y YS D P + + +
Sbjct: 266 VYIDGKDQPFDPKLIKEYVKYSWFDDATTGLHFSQGKTVPAPNKAGAYSFVKAPRYNGKA 325
Query: 267 RESVKIIRQCVNRLLGKNKVGPVSASDPKI--------------------------VPPK 300
ES + R + + K+
Sbjct: 326 VESGPVARMWITNPELSPVGQKLLKDLFKLNAKRFRDLGDEAAFSVMGRHVARAEETYYM 385
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ ++R ++ + + + E EAP+G Y+ K +I +
Sbjct: 386 LSAIERWLKEVKAGEETFAAAEIPASSEGVGFTEAPRGSLVHYINIK-DQKIDNYQIVSA 444
Query: 361 GYAH---------LQAMEFLCKGHQLAD------VSAILGSLDI 389
+ L +E G + D V+ ++ + D
Sbjct: 445 TLWNCNPRDDSGQLGPVERALVGTPVPDISNPVNVARVIRAFDP 488
>gi|189544397|gb|ACE07096.1| NuoD [Pseudomonas aeruginosa]
gi|189544399|gb|ACE07097.1| NuoD [Pseudomonas aeruginosa]
gi|189544401|gb|ACE07098.1| NuoD [Pseudomonas aeruginosa]
gi|189544403|gb|ACE07099.1| NuoD [Pseudomonas aeruginosa]
gi|189544407|gb|ACE07101.1| NuoD [Pseudomonas aeruginosa]
gi|189544409|gb|ACE07102.1| NuoD [Pseudomonas aeruginosa]
gi|189544411|gb|ACE07103.1| NuoD [Pseudomonas aeruginosa]
gi|189544413|gb|ACE07104.1| NuoD [Pseudomonas aeruginosa]
gi|189544415|gb|ACE07105.1| NuoD [Pseudomonas aeruginosa]
gi|189544417|gb|ACE07106.1| NuoD [Pseudomonas aeruginosa]
gi|189544419|gb|ACE07107.1| NuoD [Pseudomonas aeruginosa]
gi|189544421|gb|ACE07108.1| NuoD [Pseudomonas aeruginosa]
gi|189544423|gb|ACE07109.1| NuoD [Pseudomonas aeruginosa]
gi|189544427|gb|ACE07111.1| NuoD [Pseudomonas aeruginosa]
gi|189544429|gb|ACE07112.1| NuoD [Pseudomonas aeruginosa]
gi|189544431|gb|ACE07113.1| NuoD [Pseudomonas aeruginosa]
gi|189544433|gb|ACE07114.1| NuoD [Pseudomonas aeruginosa]
gi|189544435|gb|ACE07115.1| NuoD [Pseudomonas aeruginosa]
gi|189544437|gb|ACE07116.1| NuoD [Pseudomonas aeruginosa]
gi|189544439|gb|ACE07117.1| NuoD [Pseudomonas aeruginosa]
gi|189544441|gb|ACE07118.1| NuoD [Pseudomonas aeruginosa]
gi|189544443|gb|ACE07119.1| NuoD [Pseudomonas aeruginosa]
gi|189544445|gb|ACE07120.1| NuoD [Pseudomonas aeruginosa]
gi|189544447|gb|ACE07121.1| NuoD [Pseudomonas aeruginosa]
gi|189544449|gb|ACE07122.1| NuoD [Pseudomonas aeruginosa]
gi|189544451|gb|ACE07123.1| NuoD [Pseudomonas aeruginosa]
gi|189544455|gb|ACE07125.1| NuoD [Pseudomonas aeruginosa]
gi|189544457|gb|ACE07126.1| NuoD [Pseudomonas aeruginosa]
gi|189544459|gb|ACE07127.1| NuoD [Pseudomonas aeruginosa]
gi|189544461|gb|ACE07128.1| NuoD [Pseudomonas aeruginosa]
gi|189544463|gb|ACE07129.1| NuoD [Pseudomonas aeruginosa]
Length = 280
Score = 206 bits (524), Expect = 6e-51, Method: Composition-based stats.
Identities = 82/227 (36%), Positives = 129/227 (56%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +P
Sbjct: 53 ENEDYMFLNLGPNHPSAHGAFRIILQLDGEEIIDCVPEIGYHHRGAEKMAERQSWHSFIP 112
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ + Y L+VEKL GI++P R +IR++ +E RIL+HLL + T DV
Sbjct: 113 YTDRIDYLGGVMNNLPYVLSVEKLAGIKVPQRVDVIRIMMAEFFRILNHLLYLGTYIQDV 172
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+TP + F +R++ E +G R+H A++R GGV D+P + + + D P
Sbjct: 173 GAMTPVFFTFTDRQRAYKVVEAITGFRLHPAWYRIGGVAHDLPRGWDKLVREFLDWMPKR 232
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWD 230
L++ N I + R + + ++A WG +G +R +G +D
Sbjct: 233 LDEYETAALKNSILRGRTIGVAQYNTKEALEWGTTGAGLRATGCDFD 279
>gi|189544405|gb|ACE07100.1| NuoD [Pseudomonas aeruginosa]
Length = 279
Score = 205 bits (523), Expect = 7e-51, Method: Composition-based stats.
Identities = 82/227 (36%), Positives = 129/227 (56%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +P
Sbjct: 53 ENEDYMFLNLGPNHPSAHGAFRIILQLDGEEIIDCVPEIGYHHRGAEKMAERQSWHSFIP 112
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ + Y L+VEKL GI++P R +IR++ +E RIL+HLL + T DV
Sbjct: 113 YTDRIDYLGGVMNNLPYVLSVEKLAGIKVPQRVDVIRIMMAEFFRILNHLLYLGTYIQDV 172
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+TP + F +R++ E +G R+H A++R GGV D+P + + + D P
Sbjct: 173 GAMTPVFFTFTDRQRAYKVVEAITGFRLHPAWYRIGGVAHDLPRGWDKLVREFLDWMPKR 232
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWD 230
L++ N I + R + + ++A WG +G +R +G +D
Sbjct: 233 LDEYETAALKNSILRGRTIGVAQYNTKEALEWGTTGAGLRATGCDFD 279
>gi|148656791|ref|YP_001276996.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Roseiflexus sp. RS-1]
gi|148568901|gb|ABQ91046.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Roseiflexus sp. RS-1]
Length = 358
Score = 205 bits (522), Expect = 8e-51, Method: Composition-based stats.
Identities = 93/388 (23%), Positives = 149/388 (38%), Gaps = 32/388 (8%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
S+++ GP HPA G R IL + + V V+ G RG + + A+ R
Sbjct: 2 SYSLALGPFHPAWLGPQRFILHIADDRVVDVEYQNGFNERGCAERLPRLPLPDALHLVAR 61
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ A+ A+E++ ++ R L+RV +E+ R +HL +G
Sbjct: 62 ICGECSFAHSLAFCQAIEQVQRRKVGARAALLRVAIAELERTAAHLYTARAVLDAIGMEQ 121
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
++ +G R+ PGG+ +D+ P +++ + L
Sbjct: 122 RGAILDHFCQQSRDMLALVTGGRIPPPVCAPGGLLRDLTPVERQEVLAMLPGMSADLYRF 181
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
D L R R V +G + A +G G + R SG D+R QPY YS LD
Sbjct: 182 IDRLIDQRFLLMRTVEVGVLPRAAAEQFGVRGPLARASGIRRDVRVDQPYAAYSMLDVQP 241
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
I + GD Y R L+ ++E E VK++ + RL ++ + + P+
Sbjct: 242 IIQEGGDVYARLLLLLLEAYEGVKLVESALQRLPEEDPIVELPHELPR------------ 289
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
G+ + VE P+G L SDG + R +I P
Sbjct: 290 -------------------GQASSVVEGPRGAIRYTLESDG-VRLTRVQIDTPRQCDRLL 329
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVD 395
L QL DV AIL SL + +
Sbjct: 330 ARTLLSRAQLDDVMAILASLAVCVACAE 357
>gi|256829745|ref|YP_003158473.1| nickel-dependent hydrogenase large subunit [Desulfomicrobium
baculatum DSM 4028]
gi|256578921|gb|ACU90057.1| nickel-dependent hydrogenase large subunit [Desulfomicrobium
baculatum DSM 4028]
Length = 514
Score = 205 bits (522), Expect = 9e-51, Method: Composition-based stats.
Identities = 66/478 (13%), Positives = 123/478 (25%), Gaps = 106/478 (22%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L++ +E+ V G + RG E+++ + + R+ V P A
Sbjct: 23 VEGHLKIEVEVKDGKVVDAKCSGG-MFRGFEQILRGRDPRDSSQIVQRICGVCPTAHCTA 81
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP----------- 128
+A + G+++ G++ R L + SH+L+ A P
Sbjct: 82 SVMAQDDAFGVKVTTNGRITRNLIFGANYLQSHILHFYHLAALDYVKGPDVSPFVPRYAN 141
Query: 129 ------------------------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQD 164
L E R G H GG +
Sbjct: 142 ADLLTDRIKDGAKADATNTYGLNQYLKALEIRRICHEMVAMFGGRMPHVQGMVVGGATEI 201
Query: 165 IPPELVEDIGCWCDSFPSALND------------ISDLLTGNRIFKQRNVNIGTVKLEDA 212
+ V + + + +DL +K G +D
Sbjct: 202 PTADKVAEYAARFKEVQKFVIEEYLPLIYTLGSVYTDLFETGIGWKNVIA-FGVFPEDDD 260
Query: 213 WGWGFSGVMIRGSGAA--WDLRKSQPYECYSELDFDIPIGKHG--------------DCY 256
+ + G +D + + Y +S D P G H +
Sbjct: 261 YKTFLLKPGVYIDGKDEEFDSKLVKEYVGHSFFDHSAPGGLHYSVGETNPNPDKPGAYSF 320
Query: 257 DRYLVRMMEMRESVKIIRQCVN-----------------------RLLGKNKVGPVSASD 293
+ + E + R V R LG +
Sbjct: 321 VKAPRYKDKPCEVGPLARMWVQNPELSPVGQKLLKELYGIEAKNFRDLGDKAFSIMGRHV 380
Query: 294 PKI--VPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNK 351
+ +++ ++ + + Y + E EAP+G YL K
Sbjct: 381 ARAEETWLTAVAVEKWLKQVQPGAETYVKSEIPDAAEGTGFTEAPRGALLHYLKIK-DKK 439
Query: 352 PYRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
+I + + +E G + D V ++ S D G
Sbjct: 440 IENYQIVSATLWNANPRDDMGQRGPIEEALIGVPVPDIKNPVNVGRLVRSYDPULGCA 497
>gi|333001621|gb|EGK21189.1| hydrogenase-4 component G [Shigella flexneri VA-6]
Length = 432
Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats.
Identities = 67/225 (29%), Positives = 102/225 (45%), Gaps = 1/225 (0%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H ++ L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGNSDARVIPVGPLHITSYEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E +GSR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRG 224
S ++++ ++L +QR IG + + A + G +IR
Sbjct: 354 MRSDVSELVEMLLATPNMEQRTQGIGILDRQIARDYSPVGPLIRA 398
>gi|58042470|gb|AAW63674.1| NADH dehydrogenase subunit 7 [Eschscholzia californica]
Length = 248
Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats.
Identities = 129/264 (48%), Positives = 168/264 (63%), Gaps = 17/264 (6%)
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
TP LW EE EKL+ F+ER G+RMHA++ RPGGV QD+P DI F S + +
Sbjct: 2 TPSLWASEEPEKLLEFHERVPGARMHASFIRPGGVAQDLPLGSCRDIDSSTQQFASRIVE 61
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
++ TGNRI+KQR V+IGTV + WD R++ PY+ + + D D
Sbjct: 62 SEEMSTGNRIWKQRLVDIGTVTAQQXX-------------VCWDSRRAAPYDVHDQSDPD 108
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+P+G GD YDRY +R+ EMR+SV+II QC N++ G + A D K+ PP R MK
Sbjct: 109 VPVGTRGDRYDRYCIRIEEMRQSVRIIVQCPNQM----PSGMIKADDRKLCPPSRCRMKL 164
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
SMES IHHF+ YTEG+ VP Y AVEAPKGEFGV+L+S+G N+PYR KIRAPG AH Q
Sbjct: 165 SMESSIHHFEPYTEGFSVPAPSTYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGSAHSQ 224
Query: 367 AMEFLCKGHQLADVSAILGSLDIV 390
++ + K H ADV I+G+ DIV
Sbjct: 225 GLDSMSKHHMPADVVTIIGTQDIV 248
>gi|313650944|gb|EFS15344.1| hydrogenase-4 component G [Shigella flexneri 2a str. 2457T]
gi|332755529|gb|EGJ85893.1| hydrogenase-4 component G [Shigella flexneri K-671]
gi|332756203|gb|EGJ86554.1| hydrogenase-4 component G [Shigella flexneri 2747-71]
gi|332766294|gb|EGJ96504.1| hydrogenase 4, large subunit [Shigella flexneri 2930-71]
gi|333016354|gb|EGK35685.1| hydrogenase-4 component G [Shigella flexneri K-304]
Length = 432
Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats.
Identities = 66/225 (29%), Positives = 102/225 (45%), Gaps = 1/225 (0%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H ++ L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGNSDARVIPVGPLHITSYEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E +GSR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRG 224
+ ++++ ++L +QR IG + + A + G +IR
Sbjct: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQIARDYSPVGPLIRA 398
>gi|46580327|ref|YP_011135.1| periplasmic [NiFeSe] hydrogenase large subunit,
selenocysteine-containing [Desulfovibrio vulgaris str.
Hildenborough]
gi|46449744|gb|AAS96394.1| periplasmic [NiFeSe] hydrogenase, large subunit,
selenocysteine-containing [Desulfovibrio vulgaris str.
Hildenborough]
gi|311233693|gb|ADP86547.1| nickel-dependent hydrogenase large subunit [Desulfovibrio vulgaris
RCH1]
Length = 510
Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats.
Identities = 70/484 (14%), Positives = 129/484 (26%), Gaps = 99/484 (20%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ TI P G L+ + ++ V G ++RG E ++ + A
Sbjct: 14 TGRTTIAIDPVT-RIEGHLKAEVVVENGKVVDARLSGG-MYRGFETILRGRDPRDASQIV 71
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
R+ V P A LA+++ G ++P G++ R L + SH+L+ +
Sbjct: 72 QRICGVCPTAHSTASVLALDEAFGAKVPNNGRITRNLIFGANYLQSHILHFYHLSAQDFV 131
Query: 126 LTP---------------------------PLWGFEEREKLMVFYERASGSRMHAAYFRP 158
P + E R G H
Sbjct: 132 QGPDTAPFVPRFPKSDLRLSKELNKAGVDQYIEALEVRRICHEMVALFGGRMPHVQGQVV 191
Query: 159 GGVHQDIPPELVEDIGCWCDSFPSALN--DISDLLTGNRIFKQRNV---------NIGTV 207
GG + E + + + + + T +K +G
Sbjct: 192 GGATEIPTKEKLVEYAARFKKVRDFVEQKYVPVVYTIGSKYKDMFKVGQGFKAALCVGAF 251
Query: 208 KLEDAWGWGFSGVMIRGSGAA--WDLRKSQPYECYSEL-------------DFDIPIGKH 252
L+++ + G +D K + Y YS P
Sbjct: 252 PLDNSGKKHLFMPGVYAKGKDMPFDPSKIKEYVKYSWFAEETTGLNYKEGKTIPAPDKAG 311
Query: 253 GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD--------- 303
+ + E + R VN + VG D + K+
Sbjct: 312 AYSFVKAPRYDGLSLEVGPLARMWVNN-PELSPVGKKLLKDLFGISAKKFRDLGEEAAFS 370
Query: 304 --------------MKRSMESLIHHFKLYTEGYHVPV----GEVYAAVEAPKGEFGVYLI 345
M ++E + K + +P E EAP+G Y+
Sbjct: 371 LMGRHVARAEETYYMLGAIEGWLKEIKAGEDTVVMPAVPASAEGTGFTEAPRGSLLHYVK 430
Query: 346 SDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLADVS------AILGSLDIV 390
K +I + + A+E G + D+ ++ + D
Sbjct: 431 VKDS-KIDNYQIVSASLWNCNPRDDMGQRGAVEEALIGIPVDDIQNPVNVARLIRAFDPU 489
Query: 391 FGEV 394
G
Sbjct: 490 LGCA 493
>gi|24113815|ref|NP_708325.1| large subunit of hydrogenase 3 [Shigella flexneri 2a str. 301]
gi|24052902|gb|AAN44032.1| large subunit of hydrogenase 3 [Shigella flexneri 2a str. 301]
Length = 447
Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats.
Identities = 66/225 (29%), Positives = 102/225 (45%), Gaps = 1/225 (0%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H ++ L +DGE + D + +HRG EKL ET+ +
Sbjct: 189 INEGNSDARVIPVGPLHITSYEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 248
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 249 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 308
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E +GSR GGV +DI E
Sbjct: 309 CHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 368
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRG 224
+ ++++ ++L +QR IG + + A + G +IR
Sbjct: 369 MRADVSELVEMLLATPNMEQRTQGIGILDRQIARDYSPVGPLIRA 413
>gi|148253507|ref|YP_001238092.1| uptake hydrogenase accessory [Bradyrhizobium sp. BTAi1]
gi|146405680|gb|ABQ34186.1| uptake hydrogenase accessory [Bradyrhizobium sp. BTAi1]
Length = 479
Score = 204 bits (520), Expect = 2e-50, Method: Composition-based stats.
Identities = 72/478 (15%), Positives = 132/478 (27%), Gaps = 98/478 (20%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
I GP + G L + L+++ V R + L+RG E+++E + L A+ R+
Sbjct: 4 ITVGPFN-RVEGDLEVRLDIESGRVARAEVTAP-LYRGFEQILEGRPPLDALVIAPRICG 61
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP- 129
+ ++Q A A A+ + +G+ G L + HL + M A
Sbjct: 62 ICSVSQSIAAASALRQAMGVVPAQNGVLATNIAHAAENAADHLTHFYIFFMPDFAREAYA 121
Query: 130 --------------------LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL 169
R +L+ +G H+ F+PGG + I
Sbjct: 122 AHPWHGAAAERFTATKGSAAREALPARARLLEIMGLIAGKWPHSLAFQPGGTTRAIELGE 181
Query: 170 VEDIGCWCDSFPSALNDISD-------LLTGNRIFKQRN--------------------- 201
+ SF L + L R
Sbjct: 182 RIRLNAIAGSFRGFLERVVFADTLENVLALSTPSELDRWRDGRAGDFAHFLRLADALALA 241
Query: 202 ---VNIGTVKLEDAWGWGFSGVMIRG------------------SGAAWDLRKSQPYECY 240
G + G R + + +
Sbjct: 242 DLGKGPGLLMSFG-AYHDADGANFRAGLRASDGTISALPSDLITEDVSHAWMRETSRDPA 300
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR------LLGKNKVGPVSASDP 294
+ + + E E I RQ V+ LL + +
Sbjct: 301 ASRSVPDADKADAYSWCKAPRLAGEPVEVGAIARQAVDGQPLITALLASDGSNVRNRVIA 360
Query: 295 KIVPPKRAD--MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKP 352
+++ R ++ +++L + G VEA +G G +L GG +
Sbjct: 361 RLIETARLALSIEGWIKALRLSEPFCETSGEMTDGRFVGLVEAARGSLGHWLAV-GGGRI 419
Query: 353 YRCKIRAPGYAHLQ---------AMEFLCKGHQLAD-------VSAILGSLDIVFGEV 394
R +I AP + +E G ++ D + ++ S D
Sbjct: 420 ERYQIIAPTSWNFSPRDSDGVAGPLEQSLVGTEVGDAGARAVSIQHVVRSFDPCMVCT 477
>gi|189544425|gb|ACE07110.1| NuoD [Pseudomonas aeruginosa]
Length = 279
Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats.
Identities = 81/226 (35%), Positives = 128/226 (56%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +P
Sbjct: 53 ENEDYMFLNLGPNHPSAHGAFRIILQLDGEEIIDCVPEIGYHHRGAEKMAERQSWHSFIP 112
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ + Y L+VEKL GI++P R +IR++ +E RIL+HLL + T DV
Sbjct: 113 YTDRIDYLGGVMNNLPYVLSVEKLAGIKVPQRVDVIRIMMAEFFRILNHLLYLGTYIQDV 172
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+TP + F +R++ E +G R+H A++R GGV D+P + + + D P
Sbjct: 173 GAMTPVFFTFTDRQRAYKVVEAITGFRLHPAWYRIGGVAHDLPRGWDKLVREFLDWMPKR 232
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAW 229
L++ N I + R + + ++A WG +G +R +G +
Sbjct: 233 LDEYETAALKNSILRGRTIGVAQYNTKEALEWGTTGAGLRATGCDF 278
>gi|121533368|ref|ZP_01665196.1| nickel-dependent hydrogenase, large subunit [Thermosinus
carboxydivorans Nor1]
gi|121307927|gb|EAX48841.1| nickel-dependent hydrogenase, large subunit [Thermosinus
carboxydivorans Nor1]
Length = 467
Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats.
Identities = 69/443 (15%), Positives = 124/443 (27%), Gaps = 71/443 (16%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L++ + +DG V +G L+RG E ++ + AV R+ V P++ A
Sbjct: 12 LEGHLKIEVTVDGRQVTDAH-AVGTLYRGFEPILAGRDPRDAVFLTQRICGVCPVSHATA 70
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA-------------- 125
ALA++ + G+ +P G+L+R L + SH+++ ++
Sbjct: 71 AALALDDVTGVAVPHNGRLLRNLILGGNYLQSHIIHFYQLSLPDYVQGPDIAPFAPRYSG 130
Query: 126 ------------LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDI 173
L E R K + SG H A GGV Q+ E +
Sbjct: 131 DYRLNKETSDRLLGHYFKALEIRRKCHEMVAQFSGKMPHQASIIAGGVTQNATKERIAAY 190
Query: 174 GCWCDSFPSALN------------DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVM 221
+ +N +D R V G L+DA
Sbjct: 191 RKLLAEVAAFINNEYQEDVGVIASAYNDYFKLGRGPANFLVY-GAFPLDDAGRDFLFTPG 249
Query: 222 IRGSGAAWDLRKS---------QPYECYSELDFDIPIGKHG-----DCYDRYLVRMMEMR 267
+G L K + + + +
Sbjct: 250 AYINGKLVTLDKEKITEDVTHAWYTSAGDGKPAEAVTQDQCNKAGAYSWVKAPRYDGMVC 309
Query: 268 ESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR-SMESLIHHFKLYTEGYHVPV 326
E + R ++ + A ++ L +
Sbjct: 310 EVGPLARMWISGRYTNGVSVMDRIVARMLEAKLVAQTLPVWLDELEIGGPCEAAVEIPYM 369
Query: 327 GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQL 377
G EAP+G G +++ + + R + P + +E G +
Sbjct: 370 GVGVGLTEAPRGALGHWVVIN-NYRIERYQAVVPTTWNASPRDKAGQPGPLETALIGLPV 428
Query: 378 ------ADVSAILGSLDIVFGEV 394
DV + S D
Sbjct: 429 LDADNPLDVVRTVHSFDPCLACA 451
>gi|303239422|ref|ZP_07325949.1| nickel-dependent hydrogenase large subunit [Acetivibrio
cellulolyticus CD2]
gi|302592985|gb|EFL62706.1| nickel-dependent hydrogenase large subunit [Acetivibrio
cellulolyticus CD2]
Length = 470
Score = 203 bits (517), Expect = 4e-50, Method: Composition-based stats.
Identities = 59/459 (12%), Positives = 118/459 (25%), Gaps = 77/459 (16%)
Query: 6 SRSFTINFGPQHPAAH--GVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
++ IN P G + + ++ V V GLL RG EK++ + AV
Sbjct: 2 TKRIVIN-----PVTRISGFMEIDATIENNTVVDVKTE-GLLFRGFEKMLVGRNPFDAVY 55
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+ R+ + A LA+E +G+ +G+ +R + + +H+ + +
Sbjct: 56 FTQRICGICSTAHSMASTLALEAAMGVVPTEQGRYLRDILHGCEFLQNHIRHFYQYTIPD 115
Query: 124 GAL--------------------------TPPLWGFEEREKLMVFYERASGSRMHAAYFR 157
+ G H
Sbjct: 116 FVRLPDKYPLYVTDHNDFRLPKDKNDEIAAHYFESLDISRSAHEMLAVLGGKAPHNHGIF 175
Query: 158 PGGVHQDIPPELVEDIGCWCDSFPSAL--NDISDLLTGNRIFKQRNVNIGTV-------- 207
GG+ + + I + + + D T R + G
Sbjct: 176 VGGITTQATTDRIIKIKSILHTIQQFIISRMVPDAYTIARYYSDYYKIGGGYGNLLSYGC 235
Query: 208 ----------------KLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGK 251
+ G + +W K Y+ + +
Sbjct: 236 FNGYKELGTLYVNPLVYSQGKVNMFNPGEITEEIDYSWYQDKMDEYKPMDTVPEAEMSKR 295
Query: 252 HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR-SMES 310
G + + E + RQ ++ + K ++ +E+
Sbjct: 296 QGYSWVKAPRYNGMPYEVGPLARQWLSGEYRNGISTMDRTVARVLEAKKITEILSILIEN 355
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---- 366
LI + E ++ +G G +L D K +I P +L
Sbjct: 356 LIPGVSVQKEYAIPTSSAGGGLIDTTRGALGHWLKID-NEKLAFYQIITPSAWNLSTRGN 414
Query: 367 -----AMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
E G + + + I+ S D
Sbjct: 415 NNLRGTSEQALVGTTIQNLDNPVELGRIIRSFDPCVSCA 453
>gi|333002275|gb|EGK21839.1| hydrogenase-4 component G [Shigella flexneri K-272]
gi|333016096|gb|EGK35428.1| hydrogenase-4 component G [Shigella flexneri K-227]
Length = 432
Score = 203 bits (517), Expect = 4e-50, Method: Composition-based stats.
Identities = 64/225 (28%), Positives = 102/225 (45%), Gaps = 1/225 (0%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + + GP H ++ L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGNSDARVLPVGPLHITSYEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +VE LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 234 KVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F RE+ M E +GSR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREQSMTMAELLTGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRG 224
+ ++++ ++L +QR IG + + A + G +IR
Sbjct: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQIARDYSPVGPLIRA 398
>gi|82702797|ref|YP_412363.1| nickel-dependent hydrogenase, large subunit [Nitrosospira
multiformis ATCC 25196]
gi|82410862|gb|ABB74971.1| NAD(P)-dependent nickel-iron dehydrogenase catalytic subunit
[Nitrosospira multiformis ATCC 25196]
Length = 493
Score = 202 bits (515), Expect = 7e-50, Method: Composition-based stats.
Identities = 69/436 (15%), Positives = 128/436 (29%), Gaps = 62/436 (14%)
Query: 20 AHGVLRLILELD-GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ L LD V++ HI + RG EK I+ + + + RL + P++
Sbjct: 25 VEGHGKVTLLLDEDNRVQQARFHI-VEFRGFEKFIQGRPYTEVPVLVQRLCGICPVSHNL 83
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A + A++ ++G P +R L + SH L+ +
Sbjct: 84 AASKAMDVIVGAAPPPAADKLRRLMHMGQMLQSHALHFFHLSSPDLLFGFDAEVGKRNIA 143
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ SG R+H PGG+ +++ E + + D
Sbjct: 144 GLAMQFPDIARQGVGLRKFGQEVIRMTSGKRVHGTGVIPGGMSKNLSREDRDWLLAEIDQ 203
Query: 180 FPSALNDISDLLTGNR-IFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA----------A 228
+L+ K N G + G M G
Sbjct: 204 VVRWSQQAVNLIKRLYGEHKDFYNNFGYYRSSFMSLVREDGAMDLYHGNLRAIDDKGQTI 263
Query: 229 WDLRKSQPYECYSELDFDIPIGKH-----------GDCYDRYLVRMMEMRESVKIIRQCV 277
+D Y Y + G L R+ + +
Sbjct: 264 FDHVDYSHYGDYIHEEVKSWSYMKFPFIRSQGREEGWYRVGPLARVNNCDFIPTPLAEAE 323
Query: 278 NRLLGKNKVGPVSASDPKIVPPKRADMKRSMESL--IHHFKLYTEGYHVPVGE----VYA 331
++ + G S + + +M S E++ + H V +GE
Sbjct: 324 RKIFKEYDGGRASHATLSFHWARMIEMLHSAEAIRELLHDDDLLSDDLVNIGERQLRGVG 383
Query: 332 AVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK--------GHQLAD---- 379
+EAP+G + + + R + + QAM + G QL +
Sbjct: 384 VIEAPRGTLIHHYRINEDEQIVRANLIVATTHNNQAMNEAIRQVSLQYLDGQQLTEGLLN 443
Query: 380 -VSAILGSLDIVFGEV 394
+ + + D
Sbjct: 444 YIEVAIRAFDPCLSCA 459
>gi|189544453|gb|ACE07124.1| NuoD [Pseudomonas aeruginosa]
Length = 280
Score = 202 bits (514), Expect = 7e-50, Method: Composition-based stats.
Identities = 80/227 (35%), Positives = 127/227 (55%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +P
Sbjct: 53 ENEDYMFLNLGPNHPSAHGAFRIILQLDGEEIIDCVPEIGYHHRGAEKMAERQSWHSFIP 112
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Y DR+DY+ + Y L+VEKL GI++P R +IR++ +E RIL+HLL + T DV
Sbjct: 113 YTDRIDYLGGVMNNLPYVLSVEKLAGIKVPQRVDVIRIMMAEFFRILNHLLYLGTYIQDV 172
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
GA+TP + F +R++ E +G R+H A++R GGV D+P + + + D P
Sbjct: 173 GAMTPVFFTFTDRQRAYKVVEAITGFRLHPAWYRIGGVAHDLPRGWDKLVREFLDWMPKR 232
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWD 230
L++ N I + R + + ++A G + +R +G +D
Sbjct: 233 LDEYETAALKNSILRGRTIGVAQYNTKEALERGATDAGLRATGCDFD 279
>gi|332755129|gb|EGJ85494.1| hydrogenase-4 component G [Shigella flexneri 4343-70]
gi|333001891|gb|EGK21457.1| hydrogenase-4 component G [Shigella flexneri K-218]
Length = 432
Score = 202 bits (514), Expect = 9e-50, Method: Composition-based stats.
Identities = 65/225 (28%), Positives = 102/225 (45%), Gaps = 1/225 (0%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FL 59
+++ S + I GP H ++ L +DGE + D + +HRG EKL ET+ +
Sbjct: 174 INEGNSDARVIPVGPLHITSYEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ DR+ + AY +V+ LGIE+P R IR + E+ R+ SHLLN+
Sbjct: 234 EVTFLSDRVCGICGFAHSVAYTNSVKNALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
VG T + F REK M E +GSR GGV +DI E
Sbjct: 294 CHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRG 224
+ ++++ ++L +QR IG + + A + G +IR
Sbjct: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQIARDYSPVGPLIRA 398
>gi|51246064|ref|YP_065948.1| hydrogenase, large chain [Desulfotalea psychrophila LSv54]
gi|50877101|emb|CAG36941.1| probable hydrogenase, large chain [Desulfotalea psychrophila LSv54]
Length = 471
Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats.
Identities = 55/435 (12%), Positives = 114/435 (26%), Gaps = 62/435 (14%)
Query: 20 AHGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD E V H+ L RG EK E + + + V +R+ + P++
Sbjct: 13 IEGHGKITINLDEEGKVADARLHVTQL-RGFEKFCEGRPYTEMVSLTERICGICPISHSL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV--------------- 123
A + ++++G+ +P +R L + I SH L+ +
Sbjct: 72 ASSKTCDQIMGVRVPETATKLRRLLNCGEFIQSHSLSFFYLSSPDLLLGMGSDPAQRNIF 131
Query: 124 ----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
+ G R+ + +G R+H ++ PGGV+ + E +++
Sbjct: 132 GVLKANPAFAMDGIRLRKIGQQIIQWFAGKRIHPSWVVPGGVNAPLSAEHRDNMLSVLPE 191
Query: 180 FPSALNDISDLL-TGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSG------------ 226
+ + G M G
Sbjct: 192 ALDIIERTLTYFRQSLHKHYKEIETFANFPTYFLGLVDREGRMEHVEGKLRFIDAQGNLV 251
Query: 227 ---------AAWDLRKSQPYECYSELDFDIPIGKHGDCY----DRYLVRMMEMRESVKII 273
+ + Y + G R V
Sbjct: 252 ADQIDPACYQDYIAEAVESYSYLKSPYYKPLGYPQGIYRVGPAARLNVCDGCGTPLADRE 311
Query: 274 RQCVNRLLGKNKVGPVSASDPKIVPPKR--ADMKRSMESLIHHFKLYTEGYHVPVGEVYA 331
L + +++ + + + E
Sbjct: 312 WATFRNLGKGPLLSSFYNHYARLIEILYCIETLDQLLRDPDILSTHIRAYAQPNFSEGIG 371
Query: 332 AVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH--------LQAMEFLCKGHQLAD---- 379
VEAP+G + D + + + LQ + G ++ D
Sbjct: 372 VVEAPRGTLFHHYNVDEDGLMTKANMIVATGNNNLAMNKGVLQVAKHFITGGKITDSAIN 431
Query: 380 -VSAILGSLDIVFGE 393
+ A++ + D
Sbjct: 432 RIQAVIRAFDPCLSC 446
>gi|212702285|ref|ZP_03310413.1| hypothetical protein DESPIG_00296 [Desulfovibrio piger ATCC 29098]
gi|212674278|gb|EEB34761.1| hypothetical protein DESPIG_00296 [Desulfovibrio piger ATCC 29098]
Length = 475
Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats.
Identities = 66/464 (14%), Positives = 121/464 (26%), Gaps = 96/464 (20%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L+ + ++ V G + RG E++++ + + R+ V P + A
Sbjct: 14 IEGHLKAQVVVENGKVVDAHLTGG-MFRGFEQILKGRDPRDSTQIVQRICGVCPTSHAMA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP----------- 128
ALA E I++ G++ R L + SH+L+ A P
Sbjct: 73 SALAQEDAFNIKVTGNGRITRNLILGANYLQSHILHFYHLAALDFVAGPDTAPFVPRFAQ 132
Query: 129 ----------------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVED 172
L E R G H PGG + E + +
Sbjct: 133 PDLRLPPEANKVGVDQYLEALEVRRIAHEMVALFGGRMPHVQGIVPGGATEMPTKEALLE 192
Query: 173 IGCWCDSFPSALND------------ISDLLTGNRIFKQR-NVNIGTVKLEDAWGWGFSG 219
+ + DL + + + + +G
Sbjct: 193 YAARFKKVRQFIVEKYLPITYIVGSVYKDLFEQGQGVHGCSCFGVFPMTDDGKTHLLKAG 252
Query: 220 VMIRGSGAAWDLRKSQP---YECYSE----------LDFDIPIGKHGDCYDRYLVRMMEM 266
V + G +D +K Y Y + K + + E+
Sbjct: 253 VFLNGRDVEFDPKKITEDLKYAWYDDATTGKGADGAETNPNLDKKDAYSFVKAPRYDGEV 312
Query: 267 RESVKIIRQCVNRLL-----------------------GKNKVGPVSASDPKIVPPKR-- 301
E R V G +KV +
Sbjct: 313 IEVGPAARMWVANAPLSEVGVKMLKEKFGIEARTIRDLGWDKVFSIMGRHVARAEEALLI 372
Query: 302 -ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
++ ++ + + +T E Y EAP+G Y+ K +I +
Sbjct: 373 ANAVEGWLKEVKPDGETFTPFEIPQSAEGYGCSEAPRGSLVHYIRVK-DQKIDSYQIISA 431
Query: 361 GYAHLQ---------AMEFLCKGHQLAD------VSAILGSLDI 389
+ +E G Q+ D V + + D
Sbjct: 432 TLWNCSPRDDKGRRGPLEEALIGVQVPDINNPVNVGRTIRAFDP 475
>gi|120602294|ref|YP_966694.1| nickel-dependent hydrogenase, large subunit [Desulfovibrio vulgaris
DP4]
gi|120562523|gb|ABM28267.1| nickel-dependent hydrogenase, large subunit [Desulfovibrio vulgaris
DP4]
Length = 488
Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats.
Identities = 69/479 (14%), Positives = 128/479 (26%), Gaps = 99/479 (20%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ TI P G L+ + ++ V G ++RG E ++ + A
Sbjct: 14 TGRTTIAIDPVT-RIEGHLKAEVVVENGKVVDARLSGG-MYRGFETILRGRDPRDASQIV 71
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
R+ V P A LA+++ G ++P G++ R L + SH+L+ +
Sbjct: 72 QRICGVCPTAHSTASVLALDEAFGAKVPNNGRITRNLIFGANYLQSHILHFYHLSAQDFV 131
Query: 126 LTP---------------------------PLWGFEEREKLMVFYERASGSRMHAAYFRP 158
P + E R G H
Sbjct: 132 QGPDTAPFVPRFPKSDLRLSKELNKAGVDQYIEALEVRRICHEMVALFGGRMPHVQGQVV 191
Query: 159 GGVHQDIPPELVEDIGCWCDSFPSALN--DISDLLTGNRIFKQRNV---------NIGTV 207
GG + E + + + + + T +K +G
Sbjct: 192 GGATEIPTKEKLVEYAARFKKVRDFVEQKYVPVVYTIGSKYKDMFKVGQGFKAALCVGAF 251
Query: 208 KLEDAWGWGFSGVMIRGSGAA--WDLRKSQPYECYSEL-------------DFDIPIGKH 252
L+++ + G +D K + Y YS P
Sbjct: 252 PLDNSGKKHLFMPGVYAKGKDMPFDPSKIKEYVKYSWFAEETTGLNYKEGKTIPAPDKAG 311
Query: 253 GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD--------- 303
+ + E + R VN + VG D + K+
Sbjct: 312 AYSFVKAPRYDGLSLEVGPLARMWVNN-PELSPVGKKLLKDLFGISAKKFRDLGEEAAFS 370
Query: 304 --------------MKRSMESLIHHFKLYTEGYHVPV----GEVYAAVEAPKGEFGVYLI 345
M ++E + K + +P E EAP+G Y+
Sbjct: 371 LMGRHVARAEETYYMLGAIEGWLKEIKAGEDTVVMPAVPASAEGTGFTEAPRGSLLHYVK 430
Query: 346 SDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLADVS------AILGSLDI 389
K +I + + A+E G + D+ ++ + D
Sbjct: 431 VKDS-KIDNYQIVSASLWNCNPRDDMGQRGAVEEALIGIPVDDIQNPVNVARLIRAFDP 488
>gi|121604855|ref|YP_982184.1| nickel-dependent hydrogenase large subunit [Polaromonas
naphthalenivorans CJ2]
gi|120593824|gb|ABM37263.1| nickel-dependent hydrogenase, large subunit [Polaromonas
naphthalenivorans CJ2]
Length = 485
Score = 200 bits (510), Expect = 2e-49, Method: Composition-based stats.
Identities = 67/482 (13%), Positives = 124/482 (25%), Gaps = 104/482 (21%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
GP + G L + L++D V + ++RG E++++ K A+ Y R+ +
Sbjct: 6 VGPFN-RVEGDLEVTLDIDDGRVTSARVNAP-MYRGFEQILQGKNPHDALVYVPRICGIC 63
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLW- 131
++Q A A A+ L GI P GQ + + + HL + M
Sbjct: 64 SVSQSVACARALASLGGIAPPPNGQHVTNVMLATENLADHLTHFYLFFMPDFTRPVYARQ 123
Query: 132 --------------------GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
R++ +G H GG + +
Sbjct: 124 PWHAEALRRFAPQTGEQTRAAIAARQRWFTLLGTLAGKWPHTQSVEAGGSTRPVEAAERI 183
Query: 172 DIGCWCDSFPSALND------------------ISDLLTGNRIFKQ-------------- 199
+ F S L + D +
Sbjct: 184 RLLAKVREFRSFLERELFAAPLELITGLDSEQALWDWHAQDPWRGDFRLFLSMVQSAGLA 243
Query: 200 -------RNVNIGTVKLEDAWGWGFSGVMIRGSG---------------AAWDLRKSQPY 237
R ++ G SGV + +G AW + P
Sbjct: 244 SLGSGPGRYLSYGAYPQPGGGFEFGSGVWLASTGSLMPLDVSGIREDATHAWLSDAAGPR 303
Query: 238 ECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIV 297
+ +++ ++ E+ I RQ
Sbjct: 304 HPVEGITLPDIDKPDAYTWNKAPRLAGQVIETGAIARQLAAAHPLVLDAVRRHGGTVFTR 363
Query: 298 PPKRA--------DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGG 349
R M+ + L + G EA +G G ++++
Sbjct: 364 VLARVLELARVVPMMENWLRQLQPNAPYCVPSPAFTEGVGVGLSEAARGSLGHWVVA-SR 422
Query: 350 NKPYRCKIRAPGYAHLQ---------AMEFLCKG--------HQLADVSAILGSLDIVFG 392
+ +I AP + A+E +G ++ V I+ S D
Sbjct: 423 GRIANYQIVAPTTWNFSPRDKAGTAGALEQALEGALVQPGEATPVS-VQHIVRSFDPCMV 481
Query: 393 EV 394
Sbjct: 482 CT 483
>gi|220928501|ref|YP_002505410.1| nickel-dependent hydrogenase large subunit [Clostridium
cellulolyticum H10]
gi|219998829|gb|ACL75430.1| nickel-dependent hydrogenase large subunit [Clostridium
cellulolyticum H10]
Length = 470
Score = 200 bits (510), Expect = 2e-49, Method: Composition-based stats.
Identities = 58/441 (13%), Positives = 115/441 (26%), Gaps = 70/441 (15%)
Query: 22 GVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYA 81
G + + +D V V GLL RG EK++ + AV + R+ + A
Sbjct: 15 GFMEIDAVIDKNTVTDVKTE-GLLFRGFEKMLAGRNPFDAVYFTQRICGICSTAHSVAST 73
Query: 82 LAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL--------------- 126
LA+E + + +G+ +R + + +H+ + +
Sbjct: 74 LALETAMNVIPAEQGKYLRDILHGCEFMQNHIRHFYQYTIPDFVRLPDKYPLYVTEHNDF 133
Query: 127 -----------TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGC 175
+ G H GG+ + + I
Sbjct: 134 RIPKGKNDEIVKHYFESLDISRSAHEMLTVLGGKAPHNHGIFVGGITTQATTDKIIKIKS 193
Query: 176 WCDSFPSALNDIS--DLLTGNRIFKQRNVN---------IGTVKLEDAWGWGFSGVMIRG 224
+ + DI D T + + G + G + ++
Sbjct: 194 ILHTIRKFIADIMIPDAYTIAQYYSDYYKKGRGYGNLLSYGCFNKYNELGTLYVDPLVYT 253
Query: 225 SG---------------AAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRES 269
G +W K Y+ + + + + E
Sbjct: 254 QGKINVFNPGEITEEIDYSWYKDKMSEYKPTDTITEEDMSKSKAYSWVKAPRYSGIPYEV 313
Query: 270 VKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR-SMESLIHHFKLYTEGYHVPVGE 328
+ RQ ++ + K A++ +E+LI + E E
Sbjct: 314 GPLARQWLSGEYRNGISTMDRTIARVMETSKIAEIISILIENLIPGVTVQKEYTIPTSSE 373
Query: 329 VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA---------MEFLCKGHQLAD 379
++ +G G +L +I P +L A E + D
Sbjct: 374 GAGLIDTTRGALGHWLKIK-NGIISFYQIITPSAWNLSARGNNGMRGTAEQALMNTIIRD 432
Query: 380 V------SAILGSLDIVFGEV 394
+ I+ S D
Sbjct: 433 IDSPVELGRIIRSFDPCVSCA 453
>gi|315104929|gb|EFT76905.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL050PA2]
Length = 382
Score = 200 bits (510), Expect = 2e-49, Method: Composition-based stats.
Identities = 102/393 (25%), Positives = 156/393 (39%), Gaps = 34/393 (8%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
KK ++ G HP+ G++ + +D +++ ++G LHRG EKL E + + Q
Sbjct: 22 KKYEVTWLDLGHLHPSRPGLVTITTTVDDDVITSSQVNVGNLHRGDEKLFEARDYRQIPM 81
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
R D+ AP E A A+E +GI IP R IR L +E RI SH ++
Sbjct: 82 LASRHDWTAPFIGETGAAHAIEDAMGITIPTRVAWIRTLLAEFSRITSHFTFLSWVGHHC 141
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
E ++R SG+R+H R GG+ E +G W D
Sbjct: 142 DDAGLENAIATAIENARRIWQRCSGNRIHPMITRIGGLRIHPESEWQPTLGEWLD----D 197
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
N + L + + +G SG + R SG D R+ Y EL
Sbjct: 198 ANALVTWLRTALDATVGVRGVAVIPTNMIDRYGLSGPVSRASGVDLDTRRRT--AVYDEL 255
Query: 244 DFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+ + GD Y R + S + RQ ++RL + GP+ P +
Sbjct: 256 KWPEVVIEPRGDAYSRLATLCNDAAVSSSLCRQILDRLPNLD--GPLETRLPTTI----- 308
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
P G + +EAP G G L S G P+R +R P +
Sbjct: 309 --------------------KAPRGRTWTTIEAPWGRAGYLLESRGSTTPWRMALRTPTF 348
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
A++Q +E + G Q+ DV A + SL G++D
Sbjct: 349 ANVQVLEAVLPGTQVDDVEATIASLGWTLGDLD 381
>gi|332704234|ref|ZP_08424322.1| Cytochrome-c3 hydrogenase [Desulfovibrio africanus str. Walvis Bay]
gi|332554383|gb|EGJ51427.1| Cytochrome-c3 hydrogenase [Desulfovibrio africanus str. Walvis Bay]
Length = 477
Score = 200 bits (510), Expect = 3e-49, Method: Composition-based stats.
Identities = 65/464 (14%), Positives = 125/464 (26%), Gaps = 96/464 (20%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L+ ++++ +V G + RG E ++ + A R+ V P A
Sbjct: 16 IEGHLKAEVKVENGVVTDA-WMSGGMFRGFENILIGRDPRDATQIVQRICGVCPTAHSTA 74
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG--------------- 124
LA++ G+++ G++ R L + SH+L+ A
Sbjct: 75 SCLALDDAFGVKLTTNGRVTRNLIFGANYLQSHILHFYHLAALDYVAGPDVAPFVPRYEK 134
Query: 125 ------------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVED 172
A+ L R G H + GG + + +++
Sbjct: 135 SDLRLTPELNKVAVDQYLEALNVRLVAHEMVALFGGKMPHVSGQVVGGTTEIPSQQKLDE 194
Query: 173 IGCWCDSFPSALND------------ISDLLTGNRIFKQRN-VNIGTVKLEDAWGWGFSG 219
+ + +DLL +K + + G
Sbjct: 195 YTKRFKLVRKFIEETYVPTVYVIGKAYADLLKVGDGYKNVISFGVFPMDDSGKETLLKPG 254
Query: 220 VMIRGSGAAWDLRKSQPYECYSELDFDIPI-------------GKHGDCYDRYLVRMMEM 266
V I G A+D K + Y YS + + +
Sbjct: 255 VYINGKDVAFDPAKIKEYAKYSWFEDSCSNLHPSQGKTLPKLGKPGAYSFIKAPRYDGHP 314
Query: 267 RESVKIIRQCVNR--------------------------LLGKNKVGPVSASDPKIVPPK 300
E + R V+ L + +G A +
Sbjct: 315 VEVGPLARMWVSNPELSPMGKKQLKDLFGINANRFRDLGDLAFSIMGRHVARAEETYLVA 374
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+A +R ++ + + + E EAP+G Y+ K +I +
Sbjct: 375 KAIEERWLKEVKPGKETFVAASIPDSAEGIGFTEAPRGSLLHYVNIK-DKKIANYQIVSA 433
Query: 361 GYAHL---------QAMEFLCKGHQLAD------VSAILGSLDI 389
+ ME G + D V ++ + D
Sbjct: 434 TLWNANPRDDMGKRGPMEQALIGTPVPDAKNPVNVGRVIRAYDP 477
>gi|327334852|gb|EGE76563.1| putative NADH dehydrogenase [Propionibacterium acnes HL097PA1]
Length = 386
Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats.
Identities = 100/393 (25%), Positives = 157/393 (39%), Gaps = 34/393 (8%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
KK ++ G HP G++ + +D +++ ++G LHRG EKL E + + Q
Sbjct: 26 KKYEVTRLDLGHLHPTRSGLVTIATTVDDDVIISSQVNVGTLHRGDEKLFEVRDYRQIPM 85
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
R D+ AP E A A+E +GI IP R IR L +E RI SH ++
Sbjct: 86 LASRHDWTAPFIGETGAAHAIEDAMGITIPTRVAWIRTLLAEFSRITSHFTFLSWVGHHC 145
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
E ++R SG+R+H R GG+ E +G W D +
Sbjct: 146 DDAGLENAIATAIENARRIWQRCSGNRIHPMITRIGGLRIYPDSEWQPALGEWLDDANAL 205
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L + + + +G SG + R SG D R+ Y EL
Sbjct: 206 VTRLRTALDATVGVR----GVAVIPTNMIDRYGLSGPVSRASGIDLDTRRRT--AVYDEL 259
Query: 244 DFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+ + GD Y R + S + RQ ++RL + GP+ P +
Sbjct: 260 KWPEVVIEPRGDAYSRLATLCNDAAVSSSLCRQILDRLPSLD--GPLETRLPTAI----- 312
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
P G + +EAP G G L S G P+R +R P +
Sbjct: 313 --------------------KAPRGRTWTTIEAPWGRAGYLLESRGSTTPWRMALRTPTF 352
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
A++Q +E + G ++ DV A + SL G++D
Sbjct: 353 ANVQVLEAVLPGTRVDDVEATIASLGWTLGDLD 385
>gi|291515583|emb|CBK64793.1| Ni,Fe-hydrogenase III large subunit [Alistipes shahii WAL 8301]
Length = 507
Score = 200 bits (508), Expect = 4e-49, Method: Composition-based stats.
Identities = 79/388 (20%), Positives = 135/388 (34%), Gaps = 27/388 (6%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIET-KTFLQAVPYFDRL 68
+N GP H +GE V ++ +G HR E ET L+ + + +
Sbjct: 144 EVNVGPIHAGVIEPGAFRFICNGEQVLHLEIALGYQHRDVETAFETTANRLRQMCLAESV 203
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+ + A+A AVEKL E+P + R E+ R+ + + MDVG
Sbjct: 204 AGDSAVAHATAFARAVEKLARREVPAALECERAAALELERMAMQIADTGALCMDVGYQLG 263
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
+ R + + G+R RP G + E I + +
Sbjct: 264 QVASEALRTMTINTTQAWCGNRFGKGLIRPLGTDHPLTAEKAAMIRANVREIARRYDQVR 323
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY-SELDFDI 247
+ + R G V ++ G G R SG A D+R S P+ + L +
Sbjct: 324 RDIKSSPSLLARFEQCGIVPRDEMQRIGGVGQAARASGLARDIRTSHPWGVFAGALRHES 383
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
+ HGD R +VR E+ +S I + ++ L + G P P
Sbjct: 384 IVKTHGDVMARLMVRCREVLQSAGYIDRLLD--LHGQECGNAGHPRPDYAAPL------- 434
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
P + VE +GE L++D + +I+ P + A
Sbjct: 435 ----------------APSSLAFGLVEGWRGETCHVLLTDAEGRIAAARIKDPSLHNWLA 478
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ +G ++D S ++ + D
Sbjct: 479 LALAVRGEGISDFPICNKSFNLSYCGHD 506
>gi|297740917|emb|CBI31099.3| unnamed protein product [Vitis vinifera]
Length = 385
Score = 200 bits (508), Expect = 5e-49, Method: Composition-based stats.
Identities = 128/399 (32%), Positives = 182/399 (45%), Gaps = 27/399 (6%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ +FT N GPQHPAAHGV R +LE++GE+VER +PHIG L GTEKLIE KT+LQA+PY
Sbjct: 7 QITNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGSLQ-GTEKLIEYKTYLQALPY 65
Query: 65 FDRLDYV-APMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR + + L + + G E R +L+ I I +H ++
Sbjct: 66 SDRSEGDRGEITSRANDPLRLTECTGKE---RELGRSILWRSIRSITAH---SHDLCREI 119
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G F +L + +R G R P + + ++
Sbjct: 120 G-------AFGGTGELHLLLDRCVGQRARGTCCPPFPLCFENRLG-IQWCNVKRSCDMKT 171
Query: 184 LNDISDLL-TGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L I +GN K +G V + +I+ A+ L KS+
Sbjct: 172 LIAIWGKFPSGNNASKSEGRAVGHVTCTELVADWAF-SLIKADPLAFLLSKSRSNRACPG 230
Query: 243 LDFDIPIGKHGDCY-----DRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIV 297
+I G+ + +R S + + +RL + +
Sbjct: 231 TSNEIANGQREGSGLSRALAKLDSHSKALRVSKVLSGERWDRLYNRGS----RCKLFLSI 286
Query: 298 PPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKI 357
+ + IHHF+ YTEG+ VP Y AVEAPKGEFGV+L+S+G N+PYR KI
Sbjct: 287 AGQMTTGSSVYSTSIHHFEPYTEGFFVPAPSTYTAVEAPKGEFGVFLVSNGSNRPYRRKI 346
Query: 358 RAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
RAPG AH Q ++ + K H ADV I+G+ DIV GEVDR
Sbjct: 347 RAPGSAHSQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 385
>gi|313765267|gb|EFS36631.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL013PA1]
gi|313815364|gb|EFS53078.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL059PA1]
gi|314916080|gb|EFS79911.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL005PA4]
gi|314917001|gb|EFS80832.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL050PA1]
gi|314921277|gb|EFS85108.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL050PA3]
gi|314931061|gb|EFS94892.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL067PA1]
gi|314955069|gb|EFS99475.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL027PA1]
gi|314959109|gb|EFT03211.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL002PA1]
gi|315099472|gb|EFT71448.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL059PA2]
gi|315102023|gb|EFT73999.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL046PA1]
gi|327454546|gb|EGF01201.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL087PA3]
gi|327456617|gb|EGF03272.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL083PA2]
gi|328755601|gb|EGF69217.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL087PA1]
gi|328756928|gb|EGF70544.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL025PA2]
Length = 386
Score = 199 bits (507), Expect = 5e-49, Method: Composition-based stats.
Identities = 100/393 (25%), Positives = 157/393 (39%), Gaps = 34/393 (8%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
KK ++ G HP G++ + +D +++ ++G LHRG EKL E + + Q
Sbjct: 26 KKYEVTRLDLGHLHPTRSGLVTIATTVDDDVIISSQVNVGTLHRGDEKLFEVRDYRQIPM 85
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
R D+ AP E A A+E +GI IP R IR L +E RI SH ++
Sbjct: 86 LASRHDWTAPFIGETGAAHAIEDAMGITIPTRVAWIRTLLAEFSRITSHFTFLSWVGHHC 145
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
E ++R SG+R+H R GG+ E +G W D +
Sbjct: 146 DDAGLENAIATAIENARRIWQRCSGNRIHPMITRIGGLRIHPESEWQPALGEWLDDANAL 205
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L + + + +G SG + R SG D R+ Y EL
Sbjct: 206 VTQLRTALDATVGVR----GVAVIPTNMIDRYGLSGPVSRASGVDLDTRRRT--AVYDEL 259
Query: 244 DFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+ + GD Y R + S + RQ ++RL + GP+ P +
Sbjct: 260 KWPEVVIEPRGDAYSRLATLCNDAAVSSSLCRQILDRLPSLD--GPLETRLPTAI----- 312
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
P G + +EAP G G L S G P+R +R P +
Sbjct: 313 --------------------KAPRGRTWTTIEAPWGRAGYLLESRGSTTPWRMALRTPTF 352
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
A++Q +E + G ++ DV A + SL G++D
Sbjct: 353 ANVQVLEAVLPGTRVDDVEATIASLGWTLGDLD 385
>gi|314922422|gb|EFS86253.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL001PA1]
Length = 382
Score = 199 bits (507), Expect = 5e-49, Method: Composition-based stats.
Identities = 101/393 (25%), Positives = 156/393 (39%), Gaps = 34/393 (8%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
KK ++ G HP+ G++ + +D +++ ++G LHRG EKL E + + Q
Sbjct: 22 KKYEVTWLDLGHLHPSRPGLVTITTTVDDDVITSSQVNVGNLHRGDEKLFEARDYRQIPM 81
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
R D+ AP E A A+E +GI IP R IR L +E RI SH ++
Sbjct: 82 LASRHDWTAPFIGETGAAHAIEDAMGITIPTRVAWIRTLLAEFSRITSHFTFLSWVGHHC 141
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
E ++R SG+R+H R GG+ E +G W D
Sbjct: 142 DDAGLENAIATAIENARRIWQRCSGNRIHPMITRIGGLRIHPESEWQPTLGEWLD----D 197
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
N + L + + +G SG + R SG D R+ Y EL
Sbjct: 198 ANALVTWLRTALDATVGVRGVAVIPTNMIDRYGLSGPVSRASGVDLDTRRRT--AVYDEL 255
Query: 244 DFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+ + GD Y R + S + RQ ++RL + GP+ P +
Sbjct: 256 KWPEVVIEPRGDAYSRLATLCNDAAVSSSLCRQILDRLPNLD--GPLETRLPTTI----- 308
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
P G + +EAP G G L S G P+R +R P +
Sbjct: 309 --------------------KAPRGRTWTTIEAPWGRAGYLLESRGSTTPWRMALRTPTF 348
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
A++Q +E + G ++ DV A + SL G++D
Sbjct: 349 ANVQVLEAVLPGTRVDDVEATIASLGWTLGDLD 381
>gi|325529421|gb|EGD06342.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Burkholderia sp.
TJI49]
Length = 495
Score = 199 bits (507), Expect = 5e-49, Method: Composition-based stats.
Identities = 84/386 (21%), Positives = 137/386 (35%), Gaps = 34/386 (8%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
+ FGP + + GE + P++ L HRG EK E A +R+
Sbjct: 144 LPFGPVRADVLESAQFVFYYVGEGILYYQPNLFLKHRGMEKQFEGMECGAATLLAERVSG 203
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
V Q AY AVE +P R + RV+ +E+ RI +HL +
Sbjct: 204 VDSFAQALAYVQAVEDAAQCSVPKRAEWFRVIAAELERIYNHLHYLGHLCHTTTLKVGES 263
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
G E RA GSR PGGV +++ V + L
Sbjct: 264 QGKLLEELAKQINARACGSRFLRNLLWPGGVRRELDIYAVAKGLSCLK---PQIEAYIGL 320
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
+ R ++ + + A+ G +G + R SG DLR+ PY Y L + +
Sbjct: 321 IERTTSHLDRLISTAPLSQKLAFDQGATGPVERASGVDRDLRRDHPYAMYRTLAPAVALE 380
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
GD R VR+ E+R S+ ++ + ++ G GP+ A+ P
Sbjct: 381 AGGDACARMRVRIAELRASIDLVERAID---GVAPGGPILAACP---------------- 421
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
GE E+ +G + D + R KI++P +A+ + +
Sbjct: 422 ------------VPAAGEGLGWAESSRGTVMYAVHFDDAGRLARVKIKSPSFANWRVFQS 469
Query: 371 LCKGHQLADVSAILGSLDIVFGEVDR 396
+ D + S + R
Sbjct: 470 TVYDSNMMDYAINEASFGLTIAGCAR 495
>gi|239736661|gb|ACS13037.1| NdhH [Oryza sativa]
gi|239736663|gb|ACS13038.1| NdhH [Oryza sativa]
gi|239736665|gb|ACS13039.1| NdhH [Oryza sativa Indica Group]
gi|239736667|gb|ACS13040.1| NdhH [Oryza sativa]
gi|239736669|gb|ACS13041.1| NdhH [Oryza sativa]
gi|239736671|gb|ACS13042.1| NdhH [Oryza sativa]
gi|239736673|gb|ACS13043.1| NdhH [Oryza sativa Japonica Group]
gi|239736675|gb|ACS13044.1| NdhH [Oryza sativa]
gi|239736677|gb|ACS13045.1| NdhH [Oryza sativa]
gi|239736679|gb|ACS13046.1| NdhH [Oryza sativa]
gi|239736681|gb|ACS13047.1| NdhH [Oryza sativa]
gi|239736683|gb|ACS13048.1| NdhH [Oryza sativa]
gi|239736685|gb|ACS13049.1| NdhH [Oryza sativa]
gi|239736687|gb|ACS13050.1| NdhH [Oryza sativa]
gi|239736689|gb|ACS13051.1| NdhH [Oryza sativa]
gi|239736691|gb|ACS13052.1| NdhH [Oryza sativa]
gi|239736693|gb|ACS13053.1| NdhH [Oryza sativa]
gi|239736695|gb|ACS13054.1| NdhH [Oryza sativa]
gi|239736697|gb|ACS13055.1| NdhH [Oryza sativa]
gi|239736699|gb|ACS13056.1| NdhH [Oryza sativa]
gi|260909221|gb|ACX54198.1| NdhH [Oryza sativa Japonica Group]
gi|260909223|gb|ACX54199.1| NdhH [Oryza sativa Japonica Group]
Length = 216
Score = 199 bits (507), Expect = 5e-49, Method: Composition-based stats.
Identities = 91/221 (41%), Positives = 126/221 (57%), Gaps = 5/221 (2%)
Query: 176 WCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQ 235
+CD F + + L+T N IF +R +G + E+A WG SG M+R SG WDLRK
Sbjct: 1 FCDYFLRGVIEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVD 60
Query: 236 PYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPK 295
YE Y++ D+ + K GD RYLVR+ EMRES+KII+Q V ++ G GP + +
Sbjct: 61 LYESYNQFDWKVQWQKEGDSLARYLVRIGEMRESIKIIQQAVEKIPG----GPYENLEVR 116
Query: 296 IVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRC 355
+ E K + + + E+YA VEAPKGE G+YL+ D P+R
Sbjct: 117 RFKKAKNSEWNDFE-YRFLGKKPSPNFELSKQELYARVEAPKGELGIYLVGDDSLFPWRW 175
Query: 356 KIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
KIR PG+ +LQ + L K +LAD+ ILGS+DI+ GEVDR
Sbjct: 176 KIRPPGFINLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 216
>gi|225848709|ref|YP_002728872.1| [NiFe] hydrogenase, subunit alpha [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225644187|gb|ACN99237.1| putative [NiFe] hydrogenase, alpha subunit [Sulfurihydrogenibium
azorense Az-Fu1]
Length = 429
Score = 199 bits (506), Expect = 6e-49, Method: Composition-based stats.
Identities = 67/407 (16%), Positives = 122/407 (29%), Gaps = 32/407 (7%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L L L ++V+ V +I R E +++ K F R+ + P+ + +
Sbjct: 9 VEGEGTLKLILKDDLVQDVVLNIFEPPRFFESILKGKRFEVIPDITARICGICPVAYQMS 68
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG------------ALT 127
AVE + +++ + +R L+ I SH ++V +
Sbjct: 69 GIQAVESVFNVKVSKEVEDLRRLFYYGEWIHSHAIHVFFMHLPDFLGLSSFFEFLKLNPD 128
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
++ E G +H GG E ++ + + +I
Sbjct: 129 LSKKALFIKQTGRKILEVIGGRDVHPVTVCVGGFTHFPKDEEIKSLIPSLEKSYDYSLEI 188
Query: 188 SDLL--TGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
D L + E+ G + +G D + Y E
Sbjct: 189 LDFLSTLNFPQHLLPEDILFVSLKEEDHYPILKGKIYLSTGVGLDKDEFLKYFYEFEKPH 248
Query: 246 DIPIG-KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
K D + + S + + ++ K V PV + K + + ++
Sbjct: 249 STAKYSKTKDGKTYIVGPIARFNNSFDNLTENSKKIALKYGVKPVERNMSKTIIVRVIEI 308
Query: 305 KRSMESLIHHFKLYT------EGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
S+E I LY E Y V GE EAP+G Y + + I
Sbjct: 309 LDSIERSIELINLYQKNSLKNEKYEVSEGEGTGVSEAPRGILWHYYKINSNGLIEKANII 368
Query: 359 APGYAHLQAMEFLCKG-----------HQLADVSAILGSLDIVFGEV 394
P + ME L + ++ I+ D
Sbjct: 369 PPTSQNQSVMEELLRKNLTNKELKDESTLISYGEYIVRDFDPCISCA 415
>gi|313806409|gb|EFS44916.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL087PA2]
Length = 386
Score = 199 bits (506), Expect = 7e-49, Method: Composition-based stats.
Identities = 100/393 (25%), Positives = 158/393 (40%), Gaps = 34/393 (8%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
KK + ++ G HP G++ + +D +++ ++G LHRG EKL E + + Q
Sbjct: 26 KKYEATRLDLGHLHPTRSGLVTIATTVDDDVIISSQVNVGTLHRGDEKLFEVRDYRQIPM 85
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
R D+ AP E A A+E +GI IP R IR L +E RI SH ++
Sbjct: 86 LASRHDWTAPFIGETGAAHAIEDAMGITIPTRVAWIRTLLAEFSRITSHFTFLSWVGHHC 145
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
E ++R SG+R+H R GG+ E +G W D +
Sbjct: 146 DDAGLENAIATAIENARRIWQRCSGNRIHPMITRIGGLRIHPESEWQPALGEWLDDANAL 205
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L + + + +G SG + R SG D R+ Y EL
Sbjct: 206 VTRLRTALDATVGVR----GVAVIPTNMIDRYGLSGPVSRASGVDLDTRRRT--AVYDEL 259
Query: 244 DFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+ + GD Y R + S + RQ ++RL + GP+ P +
Sbjct: 260 KWPEVVIEPRGDAYSRLATLCNDAAVSSSLCRQILDRLPSLD--GPLETRLPTAI----- 312
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
P G + +EAP G G L S G P+R +R P +
Sbjct: 313 --------------------KAPRGRTWTTIEAPWGRAGYLLESRGSTTPWRMALRTPTF 352
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
A++Q +E + G ++ DV A + SL G++D
Sbjct: 353 ANVQVLEAVLPGTRVDDVEATIASLGWTLGDLD 385
>gi|313828676|gb|EFS66390.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL063PA2]
gi|315110055|gb|EFT82031.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL030PA2]
Length = 386
Score = 199 bits (506), Expect = 7e-49, Method: Composition-based stats.
Identities = 100/393 (25%), Positives = 157/393 (39%), Gaps = 34/393 (8%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
KK ++ G HP G++ + +D +++ ++G LHRG EKL E + + Q
Sbjct: 26 KKYEVTRLDLGHLHPTRSGLVTIATTVDDDVIISSQVNVGTLHRGDEKLFEVRDYRQIPM 85
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
R D+ AP E A A+E +GI IP R IR L +E RI SH ++
Sbjct: 86 LASRHDWTAPFIGETGAAHAIEDAMGITIPTRVAWIRTLLAEFSRITSHFTFLSWVGHHC 145
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
E ++R SG+R+H R GG+ E +G W D +
Sbjct: 146 DDARLENAIATAIENARRIWQRCSGNRIHPMITRIGGLRIHPESEWQPALGEWLDDANAL 205
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L + + + +G SG + R SG D R+ Y EL
Sbjct: 206 VTRLRTALDATVGVR----GVAVIPTNMIDRYGLSGPVSRASGVDLDTRRRT--AVYDEL 259
Query: 244 DFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+ + GD Y R + S + RQ ++RL + GP+ P +
Sbjct: 260 KWPEVVIEPRGDAYSRLATLCNDAAVSSSLCRQILDRLPSLD--GPLETRLPTAI----- 312
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
P G + +EAP G G L S G P+R +R P +
Sbjct: 313 --------------------KAPRGRTWTTIEAPWGRAGYLLESRGSTTPWRMALRTPTF 352
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
A++Q +E + G ++ DV A + SL G++D
Sbjct: 353 ANVQVLEAVLPGTRVDDVEATIASLGWTLGDLD 385
>gi|289428874|ref|ZP_06430554.1| respiratory-chain NADH dehydrogenase, 49 Kd subunit
[Propionibacterium acnes J165]
gi|295129844|ref|YP_003580507.1| respiratory-chain NADH dehydrogenase, 49 Kd subunit
[Propionibacterium acnes SK137]
gi|289157875|gb|EFD06098.1| respiratory-chain NADH dehydrogenase, 49 Kd subunit
[Propionibacterium acnes J165]
gi|291376544|gb|ADE00399.1| respiratory-chain NADH dehydrogenase, 49 Kd subunit
[Propionibacterium acnes SK137]
gi|313772818|gb|EFS38784.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL074PA1]
gi|313793160|gb|EFS41227.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL110PA1]
gi|313802751|gb|EFS43969.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL110PA2]
gi|313810958|gb|EFS48672.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL083PA1]
gi|313814543|gb|EFS52257.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL025PA1]
gi|313817437|gb|EFS55151.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL046PA2]
gi|313821976|gb|EFS59690.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL036PA1]
gi|313824128|gb|EFS61842.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL036PA2]
gi|313826495|gb|EFS64209.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL063PA1]
gi|313831724|gb|EFS69438.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL007PA1]
gi|313834395|gb|EFS72109.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL056PA1]
gi|313840414|gb|EFS78128.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL086PA1]
gi|314926552|gb|EFS90383.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL036PA3]
gi|314961383|gb|EFT05484.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL002PA2]
gi|314964573|gb|EFT08673.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL082PA1]
gi|314969671|gb|EFT13769.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL037PA1]
gi|314974736|gb|EFT18831.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL053PA1]
gi|314977067|gb|EFT21162.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL045PA1]
gi|314980274|gb|EFT24368.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL072PA2]
gi|314985449|gb|EFT29541.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL005PA1]
gi|314987358|gb|EFT31449.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL005PA2]
gi|314989101|gb|EFT33192.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL005PA3]
gi|315078411|gb|EFT50442.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL053PA2]
gi|315082121|gb|EFT54097.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL078PA1]
gi|315082736|gb|EFT54712.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL027PA2]
gi|315086094|gb|EFT58070.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL002PA3]
gi|315087679|gb|EFT59655.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL072PA1]
gi|315097283|gb|EFT69259.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL038PA1]
gi|327331347|gb|EGE73086.1| putative NADH dehydrogenase [Propionibacterium acnes HL096PA2]
gi|327333333|gb|EGE75053.1| putative NADH dehydrogenase [Propionibacterium acnes HL096PA3]
gi|327445190|gb|EGE91844.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL013PA2]
gi|327447273|gb|EGE93927.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL043PA1]
gi|327450281|gb|EGE96935.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL043PA2]
gi|327457107|gb|EGF03762.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL092PA1]
gi|328758389|gb|EGF72005.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL020PA1]
gi|328761159|gb|EGF74703.1| putative NADH dehydrogenase [Propionibacterium acnes HL099PA1]
Length = 386
Score = 199 bits (506), Expect = 7e-49, Method: Composition-based stats.
Identities = 100/393 (25%), Positives = 157/393 (39%), Gaps = 34/393 (8%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
KK ++ G HP G++ + +D +++ ++G LHRG EKL E + + Q
Sbjct: 26 KKYEVTRLDLGHLHPTRSGLVTIATTVDDDVIISSQVNVGTLHRGDEKLFEVRDYRQIPM 85
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
R D+ AP E A A+E +GI IP R IR L +E RI SH ++
Sbjct: 86 LASRHDWTAPFIGETGAAHAIEDAMGITIPTRVAWIRTLLAEFSRITSHFTFLSWVGHHC 145
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
E ++R SG+R+H R GG+ E +G W D +
Sbjct: 146 DDAGLENAIATAIENARRIWQRCSGNRIHPMITRIGGLRIHPESEWQPALGEWLDDANAL 205
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L + + + +G SG + R SG D R+ Y EL
Sbjct: 206 VTRLRTALDATVGVR----GVAVIPTNMIDRYGLSGPVSRASGVDLDTRRRT--AVYDEL 259
Query: 244 DFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+ + GD Y R + S + RQ ++RL + GP+ P +
Sbjct: 260 KWPEVVIEPRGDAYSRLATLCNDAAVSSSLCRQILDRLPSLD--GPLETRLPTAI----- 312
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
P G + +EAP G G L S G P+R +R P +
Sbjct: 313 --------------------KAPRGRTWTTIEAPWGRAGYLLESRGSTTPWRMALRTPTF 352
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
A++Q +E + G ++ DV A + SL G++D
Sbjct: 353 ANVQVLEAVLPGTRVDDVEATIASLGWTLGDLD 385
>gi|314965460|gb|EFT09559.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL082PA2]
gi|315094277|gb|EFT66253.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL060PA1]
gi|327329255|gb|EGE71015.1| putative NADH dehydrogenase [Propionibacterium acnes HL103PA1]
Length = 382
Score = 199 bits (506), Expect = 8e-49, Method: Composition-based stats.
Identities = 101/393 (25%), Positives = 156/393 (39%), Gaps = 34/393 (8%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
KK ++ G HP+ G++ + +D +++ ++G LHRG EKL E + + Q
Sbjct: 22 KKYEVTWLDLGHLHPSRPGLVTITTTVDDDVITSSQVNVGNLHRGDEKLFEARDYRQIPM 81
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
R D+ AP E A A+E +GI IP R IR L +E RI SH ++
Sbjct: 82 LASRHDWTAPFIGETGAAHAIEDAMGITIPTRVAWIRTLLAEFSRITSHFTFLSWVGHHC 141
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
E ++R SG+R+H R GG+ E +G W D
Sbjct: 142 DDAGLENAIATAIENARRIWQRCSGNRIHPMITRIGGLRIHPESEWQPTLGEWLD----D 197
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
N + L + + +G SG + R SG D R+ Y EL
Sbjct: 198 ANALVTWLRTALDATVGVRGVAVIPTNMIDRYGLSGPVSRASGVDLDTRRRT--AVYDEL 255
Query: 244 DFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+ + GD Y R + S + RQ ++RL + GP+ P +
Sbjct: 256 KWPEVVIEPRGDAYSRLATLCNDAAVSSSLCRQILDRLPNLD--GPLETRLPTTI----- 308
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
P G + +EAP G G L S G P+R +R P +
Sbjct: 309 --------------------KAPRGRTWTTIEAPWGRAGYLLESRGSTTPWRMGLRTPTF 348
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
A++Q +E + G ++ DV A + SL G++D
Sbjct: 349 ANVQVLEAVLPGTRVDDVEATIASLGWTLGDLD 381
>gi|289424546|ref|ZP_06426329.1| respiratory-chain NADH dehydrogenase, 49 Kd subunit
[Propionibacterium acnes SK187]
gi|289155243|gb|EFD03925.1| respiratory-chain NADH dehydrogenase, 49 Kd subunit
[Propionibacterium acnes SK187]
gi|332674683|gb|AEE71499.1| NADH-quinone oxidoreductase subunit D [Propionibacterium acnes 266]
Length = 396
Score = 199 bits (505), Expect = 9e-49, Method: Composition-based stats.
Identities = 100/393 (25%), Positives = 157/393 (39%), Gaps = 34/393 (8%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
KK ++ G HP G++ + +D +++ ++G LHRG EKL E + + Q
Sbjct: 36 KKYEVTRLDLGHLHPTRSGLVTIATTVDDDVIISSQVNVGTLHRGDEKLFEVRDYRQIPM 95
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
R D+ AP E A A+E +GI IP R IR L +E RI SH ++
Sbjct: 96 LASRHDWTAPFIGETGAAHAIEDAMGITIPTRVAWIRTLLAEFSRITSHFTFLSWVGHHC 155
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
E ++R SG+R+H R GG+ E +G W D +
Sbjct: 156 DDAGLENAIATAIENARRIWQRCSGNRIHPMITRIGGLRIHPESEWQPALGEWLDDANAL 215
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L + + + +G SG + R SG D R+ Y EL
Sbjct: 216 VTRLRTALDATVGVR----GVAVIPTNMIDRYGLSGPVSRASGVDLDTRRRT--AVYDEL 269
Query: 244 DFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+ + GD Y R + S + RQ ++RL + GP+ P +
Sbjct: 270 KWPEVVIEPRGDAYSRLATLCNDAAVSSSLCRQILDRLPSLD--GPLETRLPTAI----- 322
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
P G + +EAP G G L S G P+R +R P +
Sbjct: 323 --------------------KAPRGRTWTTIEAPWGRAGYLLESRGSTTPWRMALRTPTF 362
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
A++Q +E + G ++ DV A + SL G++D
Sbjct: 363 ANVQVLEAVLPGTRVDDVEATIASLGWTLGDLD 395
>gi|170758345|ref|YP_001787163.1| [Ni/Fe] hydrogenase, large subunit [Clostridium botulinum A3 str.
Loch Maree]
gi|169405334|gb|ACA53745.1| [Ni/Fe] hydrogenase, large subunit [Clostridium botulinum A3 str.
Loch Maree]
Length = 471
Score = 199 bits (505), Expect = 9e-49, Method: Composition-based stats.
Identities = 60/442 (13%), Positives = 116/442 (26%), Gaps = 71/442 (16%)
Query: 22 GVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYA 81
G L + ++++ I+ + GLL RG EK++E + L ++ + +R+ + A
Sbjct: 15 GFLEIKVKVEDNIIVDGE-TSGLLFRGFEKMLEGRPPLDSIYFTERICGICSTAHATAST 73
Query: 82 LAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL--------------- 126
LA+E L I I IR + I +HL +
Sbjct: 74 LALENALNITPSINDIYIRDMMHGFEFIQNHLRQFYCFTVPSYVNLPNIKPIYPQEYSDF 133
Query: 127 -----------TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGC 175
+ G + G H+ GGV +I + I
Sbjct: 134 RLPKKLNERTSSHYEEGIKYSRLAHEALAVLGGKVPHSHGIFVGGVTVNIDSYKLTKIQS 193
Query: 176 WCDSFPSALN------------DISDLL-TGNRIFKQRNVNIGTVKLEDAWGWGFSGVMI 222
+ ++ + GN + + + + GV+I
Sbjct: 194 ILKAIKKFVDNCMLEDMNIIAQYYPEYFNLGNTYGNFMSFGVFHNYDDKNISYVKPGVII 253
Query: 223 RGSGAAWDLRKSQPYECYSELDFDIPIGKH--------------GDCYDRYLVRMMEMRE 268
+D K YS D + + E
Sbjct: 254 NNKVENFDRDKITENIRYSWYVSDTMTENPVMNNEDTIDLKKEGAYSFVKAPRYAGFPME 313
Query: 269 SVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV-G 327
+ R + I K D+ ++ I Y++P
Sbjct: 314 VGPLARLKIAGEYTGGSSSMDRNIARVIETKKIIDILYNISEKIQLIPNNQSTYNIPDNA 373
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA---------MEFLCKGHQLA 378
Y ++ +G ++ I P ++ E G ++
Sbjct: 374 FGYGLIDTTRGALSHFIKI-ENKTIKYYNIITPTAWNISPKDSNGTRGVGEKSLIGLKID 432
Query: 379 DVS------AILGSLDIVFGEV 394
++ I+ S D
Sbjct: 433 NIEKPVEIGRIIRSFDPCISCA 454
>gi|117927936|ref|YP_872487.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Acidothermus
cellulolyticus 11B]
gi|117648399|gb|ABK52501.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Acidothermus
cellulolyticus 11B]
Length = 499
Score = 199 bits (505), Expect = 9e-49, Method: Composition-based stats.
Identities = 94/387 (24%), Positives = 145/387 (37%), Gaps = 28/387 (7%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
FTI GP + + ++E GE + V + HRG E+ E V +R+
Sbjct: 138 FTIPHGPVRSGVYESVEYLVETPGEDIPYVGIRVFAKHRGIERRFEDLDVSDGVLLAERV 197
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+ +A + A+ AVE L G+ R + +RV+++E+ RI +HL A G
Sbjct: 198 EGIASVAHALAFCHAVEDLAGVIPSPRDRSVRVIFAELERIANHLDVALKLADAAGLAVA 257
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
+E+++ A GSR PGG+ + P + D + +
Sbjct: 258 VSRFGYHKERILRLIGAACGSRFGRGVVVPGGIGCE-PAISPNALLTRLDDILREVFADA 316
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD-FDI 247
DLL F R G + A G G + R SG D R +PY+ YS+L F
Sbjct: 317 DLLMQTPSFLDRLRGTGPLDPALARRHGALGPIGRASGFDDDDRWHRPYDEYSDLPQFPA 376
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
GD R +R E+R S ++IRQ V + + A P +
Sbjct: 377 VSSGSGDALARLEIRWSEIRSSAELIRQAVAHIAALSAPTAEPADVPAAIDRI------- 429
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
G EAP+GE VY++ + RC R+ + +L
Sbjct: 430 ------------------SGRGIGWAEAPQGE-VVYVVECDDGRISRCAPRSASFHNLVL 470
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEV 394
+ G L D I S + V
Sbjct: 471 FHDVFAGDILTDFPFIEASFGLSIAGV 497
>gi|330863807|emb|CBX73902.1| formate hydrogenlyase subunit 5 [Yersinia enterocolitica W22703]
Length = 300
Score = 199 bits (505), Expect = 1e-48, Method: Composition-based stats.
Identities = 76/299 (25%), Positives = 125/299 (41%), Gaps = 31/299 (10%)
Query: 98 LIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFR 157
+IR + E+ R+ SHLLN+ VG T + F REK M E +G+R
Sbjct: 1 MIRTILLEVERLHSHLLNIGLSCHFVGFDTGFMQFFRVREKAMTIAEMLTGARKTYGLNL 60
Query: 158 PGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF 217
GGV +DI + ++++ D+L +QR + +G + + A +
Sbjct: 61 IGGVRRDILKADRIKTLQLVSEMRADISELVDMLMSTANIEQRTMGVGMLDRKIARDFSP 120
Query: 218 SGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCV 277
G MIR SG A D+R PY Y+ + ++ D + R LVR+ E +S+ + +
Sbjct: 121 VGPMIRASGYARDMRHDHPYANYANIPKELFSLDGCDVHSRLLVRVREFFDSLVM----I 176
Query: 278 NRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPK 337
L GP+ P K A EAP+
Sbjct: 177 EYGLNHMPDGPLLEEKVHYQPYKFAL---------------------------GFSEAPR 209
Query: 338 GEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GE + ++ K +R + RA YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 210 GEDVHWSMTGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 268
>gi|206901582|ref|YP_002251594.1| NAD-reducing hydrogenase HoxS beta subunit [Dictyoglomus
thermophilum H-6-12]
gi|206740685|gb|ACI19743.1| NAD-reducing hydrogenase HoxS beta subunit [Dictyoglomus
thermophilum H-6-12]
Length = 474
Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats.
Identities = 71/435 (16%), Positives = 122/435 (28%), Gaps = 62/435 (14%)
Query: 20 AHGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G R+ + L+ E VE H+ RG EK E + F + +R+ + P++
Sbjct: 13 IEGHARVTIHLNDEGKVENAFFHVD-QFRGFEKFSEGRYFAEMPVITERICGICPISHHL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A A A ++++G+EIP +L+R L I SH ++ A
Sbjct: 72 ASAKATDEIIGVEIPRTAKLLRELIHMGQIIQSHSMHFFELAGPDLILGWDADPKIRNVV 131
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
L + R+ E +G R+H + PGGV+ + P ++I D
Sbjct: 132 GLIQQNPDLALKAVKLRKFGQRIIELVAGRRIHPTFAVPGGVNSSLSPSARDEILSGIDE 191
Query: 180 FPSALNDISDLLTGN-RIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLR------ 232
+ + L K+ + G + G +
Sbjct: 192 MIGYIKEGIKLAEDFIEKNKELCDKFASFPTGYMGLVKEDGSLELYDGKIRFMDKDGNIV 251
Query: 233 ---KSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRL--------- 280
K Q Y Y + Y R +++
Sbjct: 252 KEFKPQYYLRYIGEKVEDWSYLKFPYYKPLGYPNGVYRVGPLARLNIADKISTPLANEEF 311
Query: 281 -------LGKNKVGPVSASDPKIVP--PKRADMKRSMESLIHHFKLYTEGYHVPVGEVYA 331
GK G + +++ + +E E V E
Sbjct: 312 KKFKSINNGKPVEGSIYYHYARLIETIYALERAREILEDPEVMSPNVLEVGEVTNEEGVG 371
Query: 332 AVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFL-------------CKGHQLA 378
VEAP+G + D + + + AM K L
Sbjct: 372 VVEAPRGTLIHHYWVDEKGTIEKVNLIVSTGHNNWAMSKAVEMVAKAFVDGKNLKEGMLN 431
Query: 379 DVSAILGSLDIVFGE 393
V + D
Sbjct: 432 RVEGAIRCYDPCLSC 446
>gi|302386554|ref|YP_003822376.1| nickel-dependent hydrogenase large subunit [Clostridium
saccharolyticum WM1]
gi|302197182|gb|ADL04753.1| nickel-dependent hydrogenase large subunit [Clostridium
saccharolyticum WM1]
Length = 458
Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats.
Identities = 59/430 (13%), Positives = 123/430 (28%), Gaps = 59/430 (13%)
Query: 22 GVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYA 81
G + + +++ + + G++ RG EK+++ ++ AV + R+ + A A
Sbjct: 15 GYMEIDADIENQSIVDARTK-GMMFRGFEKMLQGRSPFDAVYFTQRICGICSTAHSMASA 73
Query: 82 LAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREK--- 138
LA+E+ L I +G+ +R L + +HL + + P + +RE
Sbjct: 74 LALEEALNIVPSEQGRYLRDLLHACEFLQNHLRHFYQLTLPDYVKLPEDYPLFKREHDDF 133
Query: 139 -----------------------LMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGC 175
G H GG+ I + + I
Sbjct: 134 RLPKDINDKMVKDYFDSLEFSRNSHQMLAILGGKAPHNHGVFIGGITSPISADKIISIKS 193
Query: 176 WCDSF-----PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWD 230
+ D+ + T + G + + + + +
Sbjct: 194 ILYGIGQFITEKMIPDVYTIGTYYPEYYHMGGGYGNLLSYGCFNNYKDLGTLYVNPLVYS 253
Query: 231 LRKS-----------QPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR 279
K+ Y ++E D + + E + RQ ++
Sbjct: 254 QGKTSSFDPGLLSQEDEYAWFNENDEPDRNKPQAYSWVKAPRYDNIPYEVGPLARQWLSG 313
Query: 280 LLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP-VGEVYAAVEAPKG 338
G + K ++ +++ + E Y +P V+ +G
Sbjct: 314 EYGNGISAMDRTIARVLEAKKIVEIMQTLIDNLIPGVPMQEEYEIPLQSSGKGLVDTTRG 373
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQ----AM----EFLCKGHQLADVSA------IL 384
G +L +I P +L M E G + + A I+
Sbjct: 374 ALGHWLYI-ENRTIAFYQIITPSAWNLSTQSNGMKGTGEQALIGAPVNQLEAPVEIGRII 432
Query: 385 GSLDIVFGEV 394
S D
Sbjct: 433 RSFDPCVSCA 442
>gi|27382054|ref|NP_773583.1| HupV protein [Bradyrhizobium japonicum USDA 110]
gi|530184|gb|AAA62628.1| hupV [Bradyrhizobium japonicum USDA 110]
gi|27355224|dbj|BAC52208.1| HupV protein [Bradyrhizobium japonicum USDA 110]
Length = 479
Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats.
Identities = 75/477 (15%), Positives = 133/477 (27%), Gaps = 96/477 (20%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
I GP + G L + L+++ V R + L+RG E+++E + L A+ R+
Sbjct: 4 ITIGPFN-RVEGDLEVRLDVESGRVMRAEVTAP-LYRGFEQILEGRPPLDALALAPRICG 61
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP- 129
+ ++Q A A A+ + IE G L + HL + M A
Sbjct: 62 ICSVSQSVAAAAALRDAMSIEAAPNGLLATNIAHAAENAADHLTHFYIFFMPDFAREAYA 121
Query: 130 --------------------LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL 169
R +L+ +G H+ F+PGG + I
Sbjct: 122 AHSWHSETRERFAATRGSAARDALPARARLLETMGIIAGKWPHSLAFQPGGSTRAIDLGE 181
Query: 170 VEDIGCWCDSFPSALNDIS--------------DLLTGNRIFKQ---------------- 199
+ +F S L + D L R +
Sbjct: 182 RVRLLSITTAFRSFLERVVFADSLENVLAIASADELDSWRDGRGGDFAHFLRLADSLALT 241
Query: 200 -RNVNIGTVKLEDAWG--------WGFSGVMI---------RGSGAAWDLRKSQPYECYS 241
G + A+ G G + + +
Sbjct: 242 GLGRGTGLMMSYGAYHGVDGELFPRGLFGPCATIEPLPLTQITEDVSHAWMRDSSADPAH 301
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR------LLGKNKVGPVSASDPK 295
P + + + E I RQ V L+ ++ S +
Sbjct: 302 SSTVPDPDKPAAYSWCKAPRLSGQPIEVGAIARQTVAGQALITDLVARDGTNVRSRVIAR 361
Query: 296 IVPPKRAD--MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPY 353
++ R M++ +L +P G VEA +G G ++ +
Sbjct: 362 LIETARIALAMEQWTRALRLSEPFCNNAREIPDGSYVGLVEAARGSLGHWMAV-SQGRIE 420
Query: 354 RCKIRAPGYAHLQ---------AMEFLCKGHQLAD-------VSAILGSLDIVFGEV 394
R +I AP + +E G + D + I+ S D
Sbjct: 421 RYQIIAPTTWNFSPRDSFDVGGPLEQALVGTDVGDAGPRAVAIQHIVRSFDPCMVCT 477
>gi|169832082|ref|YP_001718064.1| hydrogen:quinone oxidoreductase [Candidatus Desulforudis
audaxviator MP104C]
gi|169638926|gb|ACA60432.1| Hydrogen:quinone oxidoreductase [Candidatus Desulforudis
audaxviator MP104C]
Length = 475
Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats.
Identities = 66/464 (14%), Positives = 125/464 (26%), Gaps = 80/464 (17%)
Query: 2 DKKKSRSFTINFGPQHPAA--HGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFL 59
+ +K + IN P G ++ + ++ V + RG E ++ +
Sbjct: 4 NTEKGQKIVIN-----PTTRTLGASQVEVRVEAGRVIHARCGA-TVFRGFELILRDRDPR 57
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
A R+ + P A + AVE L G+ P G L+R L + +H+ +
Sbjct: 58 DAAYITQRICGICPTAHAIAASFAVEDLAGVRPPHNGNLLRNLIFAGDMLQNHIRHFYLF 117
Query: 120 AMDVGALTP--------------------------PLWGFEEREKLMVFYERASGSRMHA 153
A+ P + K G H
Sbjct: 118 AVPDYVRGPECRPLVPPPTTDYRLPRAKNERLVDSYFQAIDVSRKAYEISALLGGKAPHP 177
Query: 154 AYFRPGGVHQDIPPELVEDIGCWCDSFPSALND--ISDLLTGNRIFKQRNVNIGTVKLED 211
PGG + V ++ S + + + D+ T +
Sbjct: 178 HGIIPGGSSVPVTAITVLNLLSIVKSIQKFVEERMLPDVYTLAEHYPDYFEIGVRGADFL 237
Query: 212 AWGWGFSGVMIRGSGAAW-------------DLRKSQPYECYSELDFD------------ 246
+G SG + D + + Y+ + +
Sbjct: 238 NFGLFPLDP--EASGHHFPGAAVIDGRMEAVDSGEISEHLRYTHFEGEQLAHPARGETRP 295
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
P G + + E + + V + ++ + A + R
Sbjct: 296 NPDKPGGYSWCKAPRYRGRALEGGPLAQLWVRGDYRRGVSVMDRLIARALISREVAGLMR 355
Query: 307 SMESLIHHFKLYTEGYHVPV-GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
+ + + Y VP G A +G G +L G + +I P +
Sbjct: 356 KWLTALRPGQPVFNRYQVPESGTGVGLTGAMRGGLGHWLEV-EGGRIKHYQIVTPTAWNY 414
Query: 366 Q---------AMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
+E G +AD + +L S D V
Sbjct: 415 SPHDDQGGPGPVEEALIGTPVADAKEPVEIGRVLHSFDPCMSCV 458
>gi|282853332|ref|ZP_06262669.1| respiratory-chain NADH dehydrogenase, 49 Kd subunit
[Propionibacterium acnes J139]
gi|282582785|gb|EFB88165.1| respiratory-chain NADH dehydrogenase, 49 Kd subunit
[Propionibacterium acnes J139]
Length = 382
Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats.
Identities = 101/393 (25%), Positives = 156/393 (39%), Gaps = 34/393 (8%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
KK ++ G HP+ G++ + +D +++ ++G LHRG EKL E + + Q
Sbjct: 22 KKYEVTWLDLGHLHPSRPGLVTITTTVDDDVITSSQVNVGNLHRGDEKLFEARGYRQIPM 81
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
R D+ AP E A A+E +GI IP R IR L +E RI SH ++
Sbjct: 82 LASRHDWTAPFIGETGAAHAIEDAMGITIPTRVAWIRTLLAEFSRITSHFTFLSWVGHHC 141
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
E ++R SG+R+H R GG+ E +G W D
Sbjct: 142 DDAGLENAIATAIENARRIWQRCSGNRIHPMITRIGGLRIHPESEWQPTLGEWLD----D 197
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
N + L + + +G SG + R SG D R+ Y EL
Sbjct: 198 ANALVTWLRTALDATVGVRGVAVIPTNMIDRYGLSGPVSRASGVDLDTRRRT--AVYDEL 255
Query: 244 DFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+ + GD Y R + S + RQ ++RL + GP+ P +
Sbjct: 256 KWPEVVIEPRGDAYSRLATLCNDAAVSSSLCRQILDRLPNLD--GPLETRLPTTI----- 308
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
P G + +EAP G G L S G P+R +R P +
Sbjct: 309 --------------------KAPRGRTWTTIEAPWGRAGYLLESRGSTTPWRMALRTPTF 348
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
A++Q +E + G ++ DV A + SL G++D
Sbjct: 349 ANVQVLEAVLPGTRVDDVEATIASLGWTLGDLD 381
>gi|313157346|gb|EFR56769.1| respiratory-chain NADH dehydrogenase, 49 kD subunit [Alistipes sp.
HGB5]
Length = 503
Score = 196 bits (499), Expect = 5e-48, Method: Composition-based stats.
Identities = 83/388 (21%), Positives = 143/388 (36%), Gaps = 31/388 (7%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIET-KTFLQAVPYFDRL 68
+N GP H +GE V ++ +G HRG E ET L+ + + +
Sbjct: 144 EVNVGPIHAGIIEPGAFRFICNGEQVLHLEIALGYQHRGVEHEFETTANRLRQMCLAEAV 203
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+ + +A AVEKL G R + R + E+ R+ + + MDVG
Sbjct: 204 AGDSAVTHAATFASAVEKLTGGVPSARLGVERAVALELERMAMQIADTGALCMDVGYQLG 263
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
+ R + + G+R RPGG + + E E I +++
Sbjct: 264 QVACEALRTMTINTTQAWCGNRFGKGLIRPGGTNHPLTAEKAETIRRNVAQIARRYDEVR 323
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY-SELDFDI 247
+ + R G V E+ G G R SGAA D+R + P+ + + +
Sbjct: 324 RDIKSSPTLLARFEQCGIVPREEMLRIGGVGQAARASGAARDIRATHPWGVFAGTIRHES 383
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
+ +HGD R +VR E+ +S ++RLL G + A D P +
Sbjct: 384 IVKRHGDVMARLMVRCREVLQSAGY----IDRLLADYTPGSLPAPDYAAPPAPDSL---- 435
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
+ VE +GE L++D + C+I+ P + A
Sbjct: 436 ---------------------AFGLVEGWRGETCHVLLTDAQGRIAACRIKDPSLHNWLA 474
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVD 395
+ +G ++D S ++ + D
Sbjct: 475 LALAVRGEGISDFPICNKSFNLSYCGHD 502
>gi|1773366|gb|AAB49361.1| [NiFe] hydrogenase-like protein large subunit [Alcaligenes
hydrogenophilus]
Length = 485
Score = 196 bits (498), Expect = 5e-48, Method: Composition-based stats.
Identities = 68/481 (14%), Positives = 134/481 (27%), Gaps = 102/481 (21%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
GP + G L + L++ V + + RG E+++ K + A+ Y R+ +
Sbjct: 6 VGPFN-RVEGDLEVQLDIADGQVRTAKVNAP-MFRGFEQILLGKLPMDALVYAPRICGIC 63
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT----- 127
++Q A A A+E G+ P+ GQL+ L + HL + M A
Sbjct: 64 SVSQSVAAARALEDATGVIAPLNGQLLTNLMLATENLADHLTHFYLFFMPDFARAIYASW 123
Query: 128 ----------------PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
R++ G H +PGG + +
Sbjct: 124 AWHGTVHERFAAQQGRHAKLALAARQRWFTLLGMLGGKWPHTQSIQPGGSSRAVDASERI 183
Query: 172 DIGCWCDSFPSALND------ISDLLTGNRIFKQRNVNIGTVKLEDAWGW---------- 215
+ F S L + ++ + R+ + G D +
Sbjct: 184 RLLVKVREFRSFLEQTLFGAPLEEVAALDSEQALRDWHAGAPDAGDFRLFLSLSWALGLD 243
Query: 216 -GFSGVMIRGSGAAWDLRKS-------------------------------------QPY 237
G + S A+ L + +P
Sbjct: 244 SMGPGPGLYMSNGAYPLSERGFRFAQGVWDAAAGTVSELDTAAISEDATHAFLAADGRPR 303
Query: 238 ECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL------GKNKVGPVSA 291
+ +++ + E+ I RQ V+ L + +
Sbjct: 304 HPAEGVTLPEVDKPGAYTWNKAPRLNGRVLETGAIARQMVDGHLLVRDAVARCGGVVYTR 363
Query: 292 SDPKIVPPKRA--DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGG 349
+++ M+ ++S+ ++ + EA +G G ++
Sbjct: 364 VLARLLELALIVPAMEHWIQSVRIGEPCFSPSTLPSDVDGVGLTEAARGSLGHWVSIRE- 422
Query: 350 NKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLA-D------VSAILGSLDIVFGE 393
+ +I AP + A+E G + D V I+ S D
Sbjct: 423 GRIANYQIVAPTSWNFSPRDASGTPGALEAALVGAPVMTDEQTPVAVQHIVRSFDPCMVC 482
Query: 394 V 394
Sbjct: 483 T 483
>gi|313835681|gb|EFS73395.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL037PA2]
gi|314928351|gb|EFS92182.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL044PA1]
gi|314970281|gb|EFT14379.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL037PA3]
gi|328908066|gb|EGG27825.1| respiratory-chain NADH dehydrogenase, 49 Kd subunit
[Propionibacterium sp. P08]
Length = 423
Score = 196 bits (498), Expect = 5e-48, Method: Composition-based stats.
Identities = 101/393 (25%), Positives = 163/393 (41%), Gaps = 34/393 (8%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
KK ++ G HP+ G++ + +D +++ ++G LHRG EKL E + + Q
Sbjct: 63 KKYEVTRLDLGRLHPSRPGLVTIATTVDDDLITSSQVNVGNLHRGDEKLFEVRDYRQIPM 122
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
R D+ AP E A +E+ +GI IP R IR L +E RI SHL ++
Sbjct: 123 LASRHDWTAPFIGETGAAHTIEEAMGITIPTRVTWIRTLLTEFSRITSHLTFLSWVGHHR 182
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
E ++R SG+R+H R GG+ E + W D +
Sbjct: 183 DDADLENAIATAIENARRVWQRCSGNRIHPMITRIGGLRIHPESEWQPALRVWLDEAEAL 242
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L + + + +G SG + R SG D R+ Y+EL
Sbjct: 243 VTRVRAALDSATGVR----GVAVIPANMIDSYGLSGPVSRASGVDLDARRRT--TVYNEL 296
Query: 244 DF-DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+ D+ GD + R ++ S + RQ + RL + GP+ P +
Sbjct: 297 TWPDVNTDPRGDAHARLSTLCNDVTVSSSLCRQILERLPSLD--GPLETRLPTAL----- 349
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
VP G + A+EAP G G +L S GG P+R +R P +
Sbjct: 350 --------------------KVPRGRTWTAMEAPWGRSGHFLESRGGTTPWRMALRTPTF 389
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
A++QA+E + G + V A + S+ G++D
Sbjct: 390 ANVQALETVLPGTPIDGVEATIASVGWTLGDLD 422
>gi|303238472|ref|ZP_07325006.1| nickel-dependent hydrogenase large subunit [Acetivibrio
cellulolyticus CD2]
gi|302593870|gb|EFL63584.1| nickel-dependent hydrogenase large subunit [Acetivibrio
cellulolyticus CD2]
Length = 470
Score = 196 bits (498), Expect = 6e-48, Method: Composition-based stats.
Identities = 55/441 (12%), Positives = 114/441 (25%), Gaps = 70/441 (15%)
Query: 22 GVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYA 81
G + + +D +V GLL RG E+++ + L A+ + R+ + A
Sbjct: 15 GFMEIDAAIDNNMVVDAKTK-GLLFRGFERMLNGRNPLDAIYFTQRICGICSTAHSMAST 73
Query: 82 LAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG----------------- 124
LA+E + + +G+ +R + + +H+ + ++
Sbjct: 74 LALEDAMEVVPTEQGKYLRDILHGCEFLQNHIRHFYQYSLPDFVRLPDQYPLYVADHDDF 133
Query: 125 ---------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGC 175
+ + G H GGV + V +
Sbjct: 134 RIPKGKNDEMAEHYIESLDISRSAHEMLAVLGGKVPHNHGIFVGGVTTTATADKVIKMKS 193
Query: 176 WCDSFPSALND-ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG----------VMIRG 224
+ + + NIG F G M+
Sbjct: 194 ILHKIRQFIVEKMLPDAYAIAQHYSDYYNIGGGYRNFLSYGCFCGYKEFGTLYVNPMVYI 253
Query: 225 SG---------------AAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRES 269
G +W + K Y+ + + + + E
Sbjct: 254 QGKESTFNPGKITEEINYSWYVGKKDEYKPMEIITDEDMDKNKAYSWVKAPRYNGLPCEV 313
Query: 270 VKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR-SMESLIHHFKLYTEGYHVPVGE 328
+ RQ ++ + K A++ +E+L L E E
Sbjct: 314 GPLARQWLSGDYRNGISTMDRIIARALEAKKIAEIIDVLLENLNPGISLQKEYAMPVSSE 373
Query: 329 VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLA- 378
++ +G G +L +I P +L E G +
Sbjct: 374 GAGLIDTTRGALGHWLKI-ENGTISFYQIITPSAWNLSTRGNNDIKGTAEQALIGTNIQS 432
Query: 379 -----DVSAILGSLDIVFGEV 394
++ I+ + D
Sbjct: 433 LENPVELGRIIRAFDPCISCA 453
>gi|154244299|ref|YP_001415257.1| nickel-dependent hydrogenase large subunit [Xanthobacter
autotrophicus Py2]
gi|154158384|gb|ABS65600.1| nickel-dependent hydrogenase large subunit [Xanthobacter
autotrophicus Py2]
Length = 485
Score = 196 bits (498), Expect = 6e-48, Method: Composition-based stats.
Identities = 70/484 (14%), Positives = 128/484 (26%), Gaps = 98/484 (20%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ + + GP + G L + L++ V + + L RG E+++E + A+
Sbjct: 3 TETKRLVVGPFN-RVEGDLEVRLDVADGEVRQAFVNSP-LFRGFERILEGRDPRDALVIA 60
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
R+ + ++Q HA ALA+ L GI G++ L + HL + M A
Sbjct: 61 PRICGICSVSQSHAAALALAGLEGIAPTDNGRVATNLILATENVADHLTHFHVFFMPDFA 120
Query: 126 LTPP---------------------LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQD 164
R L+ +G H +PGGV +
Sbjct: 121 RAIYEDRPWFATAARRFKAAQGESVRRALATRATLLHVMGLLAGRWPHTLAIQPGGVAKG 180
Query: 165 IPPELVEDIGCWCDSFPSALND-------------------------------------- 186
+ + + L +
Sbjct: 181 ADARDQMRLIATLGAVRADLEERLYGAPLERVAEIADVAELEAWRQAGPDGDFRLFLEIA 240
Query: 187 -ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAA-----------WDLRKS 234
DL R + E G + R G +
Sbjct: 241 ADLDLARLGRAHDRFLSYGAYALDEGRLYTGGTFANGRAKGLDPAAITEDHSFARMEGRE 300
Query: 235 QPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDP 294
P+ + F + G + + E+ RQ V + ++
Sbjct: 301 APHPPFEGSTFPDGADETGYTWCKAPRLSGLPFETGAFARQVVAGHPLARDLAAREGANV 360
Query: 295 KIVPPKR--------ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLIS 346
+ R M+ + L +G G + EA +G G +++
Sbjct: 361 RARVVGRLVETARTLIAMEGWVRQLHPGAPWCAQGAMPQSGRAFGLTEAARGALGHWMVV 420
Query: 347 DGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLAD-------VSAILGSLDIV 390
+ R +I AP + +E G + V I+ S D
Sbjct: 421 -EKGRIARYQIIAPTTWNFSPRDAVGQPGPLETALVGAPIRQGETTPVSVQHIVRSFDPC 479
Query: 391 FGEV 394
Sbjct: 480 MVCT 483
>gi|163782517|ref|ZP_02177514.1| nickel-dependent hydrogenase, large subunit [Hydrogenivirga sp.
128-5-R1-1]
gi|159882090|gb|EDP75597.1| nickel-dependent hydrogenase, large subunit [Hydrogenivirga sp.
128-5-R1-1]
Length = 419
Score = 195 bits (496), Expect = 9e-48, Method: Composition-based stats.
Identities = 61/405 (15%), Positives = 122/405 (30%), Gaps = 37/405 (9%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G+ RL + +GE V+ V I R E+L++ K Q + R+ + P+ +
Sbjct: 12 VEGLGRLSVLTEGEEVKDVRLEIFEPPRFFERLLKGKKPDQVIDTVARICGLCPVAYQLT 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA------------LT 127
A E + +++P + +R + SH ++ +
Sbjct: 72 AVEAFESIFELKVPRHIRELRRAIYCGEWVSSHSAHIFFLHLPDFYERESFLELMREKRE 131
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
G + R+ E G +H R GG ++ +E+ +S
Sbjct: 132 LLEAGLQIRKTGNSIIELLGGRHIHPVNIRVGGFYKIPSAPRIENTLAEIESALPFAEKA 191
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+L + I G + G + + + Y +L
Sbjct: 192 LELFLNFDYPEMEKERIFVSLGNHEVYPITEGSAVSSEGMNIEKNEYEEYFVEYQLPHST 251
Query: 248 PIG--------KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
+ R ++ + ++ + V L +N + A +++
Sbjct: 252 ALYSRLKDGKAYEVGALARIYNNFGKLPQDLREKVEGV--LPARNPFKSIIARIVEVIYA 309
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
R K +E Y + GE EAP+G + + I
Sbjct: 310 LREA-KHILEKFEGGEPHV--EYSIREGEGVGITEAPRGILYHRYRVNSKGEVVFANIVP 366
Query: 360 PGYAHLQAMEF-LCKGHQ---------LADVSAILGSLDIVFGEV 394
P + +AME + G + LA ++ + D
Sbjct: 367 PTSQNQRAMEEDVLLGLKTLKNGDIRVLA--EKLVRNFDPCISCA 409
>gi|254413253|ref|ZP_05027024.1| Nickel-dependent hydrogenase superfamily [Microcoleus
chthonoplastes PCC 7420]
gi|196179873|gb|EDX74866.1| Nickel-dependent hydrogenase superfamily [Microcoleus
chthonoplastes PCC 7420]
Length = 474
Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats.
Identities = 67/441 (15%), Positives = 118/441 (26%), Gaps = 74/441 (16%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD VE H+ + RG EK E + + R+ + P++
Sbjct: 13 IEGHAKISIFLDDAGEVEDARFHV-VEFRGFEKFCEGRPMWEMAGITARICGICPVSHLL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A A +K+ +++P G+ +R + + SH L+ +
Sbjct: 72 ASAKTGDKIQAVKVPPAGEKLRRMMNLGQITQSHALSFFHLSSPDFLLGWDSDPATRNVF 131
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ E ++H A+ PGGV + E I
Sbjct: 132 GLIAADPDLARSGIRLRQFGQTVIELLGAKKIHPAWAVPGGVRSPLSEEGRAWIRDRLPE 191
Query: 180 FPSALNDISDLLTG-NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA----------- 227
+ L+ L F G G GV G
Sbjct: 192 SRATLDTALGLFKQLLDKFSTEVETFGLFPSLFMGLVGKDGVWEHYDGHLRFKDSEGNMV 251
Query: 228 ------------------AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRES 269
W K Y+ D +G R + E+
Sbjct: 252 ADGLSEDDYQDFMGEAVEPWSYLKFPYYKPLGYPDGIYRVGP----LARLNICDRMGTEA 307
Query: 270 VKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVG-- 327
Q G ++V A +E L+ + ++ G
Sbjct: 308 ADRELQEFRDRAGGVATSSFFYHYARLVEILAA--LERIEQLVEDPDIVSKRTRAEAGIN 365
Query: 328 --EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFL--------CKGHQL 377
E EAP+G + D + + + AM G+++
Sbjct: 366 SLEGIGVSEAPRGTLFHHYNVDENGIIKKVNMIIATGQNNLAMNKTVAQIAKHYIHGNEI 425
Query: 378 AD-----VSAILGSLDIVFGE 393
+ V A + + D
Sbjct: 426 PEGLLNRVEAGIRAFDPCLSC 446
>gi|115523251|ref|YP_780162.1| nickel-dependent hydrogenase, large subunit [Rhodopseudomonas
palustris BisA53]
gi|115517198|gb|ABJ05182.1| nickel-dependent hydrogenase, large subunit [Rhodopseudomonas
palustris BisA53]
Length = 481
Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats.
Identities = 72/478 (15%), Positives = 126/478 (26%), Gaps = 97/478 (20%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
I GP + G L + L++ +V + L+RG E++++ + L A+ R+
Sbjct: 5 ITIGPFN-RVEGDLEVRLDIADGVVISAEVTAP-LYRGFEQILQGRAALDALTLVPRICG 62
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP- 129
+ ++Q A A+ + GI G L L HL + M A
Sbjct: 63 ICSVSQSIAAVAALRAVDGIVAAPNGVLAANLAHAAENAADHLTHFYLFFMPDFAREAYA 122
Query: 130 --------------------LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL 169
R +L+ +G H+ F+PGG + I
Sbjct: 123 ARKWHPEIVARFKAVHGSAAQQALPARARLLQIMGLLAGKWPHSLAFQPGGTTRAIDLGE 182
Query: 170 VEDIGCWCDSFPSALN--------DISDLLTGNRIFKQRNVNIG---------------- 205
+ F L D L ++ G
Sbjct: 183 RVQLLSVIADFRVFLETTLFADKLDNVLALDSVDALQRWRDGRGGDFARFLALADDLDLG 242
Query: 206 -----TVKLEDAWGWGFSGVMIRGSGA--------------------AWDLRKSQPYECY 240
+ L + +G + +G A +
Sbjct: 243 AQGRLALPLMSVGAYHGAGRPLFAAGVFDPSSAKLHGFDPASITEDVAHAWMRDTSRRPA 302
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR------LLGKNKVGPVSASDP 294
G + + E + RQ V+ LL + +
Sbjct: 303 EAETSPDADKVAGYSWCKAPRLDGRPAEVGALARQAVDGDPLIRDLLKQGGPSVKTRVIA 362
Query: 295 KIVPPKR--ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKP 352
+++ R A M+ G VEA +G G ++ K
Sbjct: 363 RLIETARLAAAMQNWARQFDLQKPFLDRIVRRGEGAGIGLVEAARGSLGHWIELFDD-KI 421
Query: 353 YRCKIRAPGYAHLQ---------AMEFLCKGHQLAD-------VSAILGSLDIVFGEV 394
R +I AP + +E G Q+ D V ++ S D
Sbjct: 422 RRYQIIAPTTWNFSPRDRDGVAGPLEQALVGTQVGDEGAASVAVQHVVRSFDPCMVCT 479
>gi|284449406|pdb|2WPN|B Chain B, Structure Of The Oxidised, As-Isolated Nifese Hydrogenase
From D. Vulgaris Hildenborough
Length = 482
Score = 194 bits (494), Expect = 2e-47, Method: Composition-based stats.
Identities = 66/465 (14%), Positives = 124/465 (26%), Gaps = 98/465 (21%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L+ + ++ V G ++RG E ++ + A R+ V P A
Sbjct: 13 IEGHLKAEVVVENGKVVDARLSGG-MYRGFETILRGRDPRDASQIVQRIXGVCPTAHSTA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP----------- 128
LA+++ G ++P G++ R L + SH+L+ + P
Sbjct: 72 SVLALDEAFGAKVPNNGRITRNLIFGANYLQSHILHFYHLSAQDFVQGPDTAPFVPRFPK 131
Query: 129 ----------------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVED 172
+ E R G H GG + E + +
Sbjct: 132 SDLRLSKELNKAGVDQYIEALEVRRICHEMVALFGGRMPHVQGQVVGGATEIPTKEKLVE 191
Query: 173 IGCWCDSFPSALN--DISDLLTGNRIFKQRNV---------NIGTVKLEDAWGWGFSGVM 221
+ + + T +K +G L+++
Sbjct: 192 YAARFKKVRDFVEQKYVPVVYTIGSKYKDMFKVGQGFKAALCVGAFPLDNSGKKHLFMPG 251
Query: 222 IRGSGAA--WDLRKSQPYECYSEL-------------DFDIPIGKHGDCYDRYLVRMMEM 266
+ G +D K + Y YS P + +
Sbjct: 252 VYAKGKDMPFDPSKIKEYVKYSWFAEETTGLNYKEGKTIPAPDKAGAYSFVKAPRYDGLS 311
Query: 267 RESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD----------------------- 303
E + R VN + VG D + K+
Sbjct: 312 LEVGPLARMWVNN-PELSPVGKKLLKDLFGISAKKFRDLGEEAAFSLMGRHVARAEETYY 370
Query: 304 MKRSMESLIHHFKLYTEGYHVPV----GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
M ++E + K + +P E EAP+G Y+ K +I +
Sbjct: 371 MLGAIEGWLKEIKAGEDTVVMPAVPASAEGTGFTEAPRGSLLHYVKVKDS-KIDNYQIVS 429
Query: 360 PGYAHL---------QAMEFLCKGHQLADVS------AILGSLDI 389
+ A+E G + D+ ++ + D
Sbjct: 430 ASLWNCNPRDDMGQRGAVEEALIGIPVDDIQNPVNVARLIRAFDP 474
>gi|319957575|ref|YP_004168838.1| NADH dehydrogenase (ubiquinone) 30 kda subunit [Nitratifractor
salsuginis DSM 16511]
gi|319419979|gb|ADV47089.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Nitratifractor
salsuginis DSM 16511]
Length = 467
Score = 194 bits (494), Expect = 2e-47, Method: Composition-based stats.
Identities = 88/387 (22%), Positives = 147/387 (37%), Gaps = 34/387 (8%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
F + GP H GE + + +RG EK++E K +A P R+
Sbjct: 114 FEVAVGPIHAGIIEPGHFHFSQAGEDMLHQEVRHFYKYRGIEKMLEGKNLAEAAPIVSRI 173
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+ + A+ VE+ E+P +L L E+ RI+ H ++ D G
Sbjct: 174 SGNESVAAQSAFLHIVEESTAQELPEALRLRHALLLELERIIHHWTDLGFIPNDAGFGAA 233
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
WG E+ R + SR + +++P + +I + A+
Sbjct: 234 LAWGSARAEEARRLMARLTRSRFG-----FEALFRELPAWDLGEISSFAQRMEEAIGWFE 288
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
+ + R G +K +DA +G GVM R SG + D+R P+ Y+E F
Sbjct: 289 NWIVDIPSLWDRMDTTGILKADDAKRYGCVGVMARASGLSLDVRSDDPF--YTERGFAAA 346
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
GD R+ VR+ E++ S+ +I+ V R M++
Sbjct: 347 TETSGDVAARFKVRIAEVKSSLALIQSFV-----------------------RELMEKGA 383
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
ES L +E G + VE+ GE + + K R R P + + QA+
Sbjct: 384 ESGEDFSLLESEA---KDGFYESFVESSLGEIYMSIEI-EAGKIGRFFYRDPSFVNWQAL 439
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEVD 395
+ G+ +AD I S D+ + D
Sbjct: 440 HLMMPGNIIADFPLINKSCDLSYAGND 466
>gi|242279519|ref|YP_002991648.1| nickel-dependent hydrogenase large subunit [Desulfovibrio
salexigens DSM 2638]
gi|242122413|gb|ACS80109.1| nickel-dependent hydrogenase large subunit [Desulfovibrio
salexigens DSM 2638]
Length = 487
Score = 194 bits (494), Expect = 2e-47, Method: Composition-based stats.
Identities = 58/480 (12%), Positives = 113/480 (23%), Gaps = 98/480 (20%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K I P G L+ + + V G ++RG E ++ + A
Sbjct: 11 KDGKIKIAIDPVT-RIEGHLKAEVVVKDGKVTDAWLSGG-MYRGFENILIGRDPRDAAQL 68
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
RL V P A A++ G+++ G++ + L + SH+L+ A
Sbjct: 69 TQRLCGVCPTAHSTASTRALDDAFGVKLTTNGRVTKNLIFGANYLQSHILHFYHLAALDF 128
Query: 125 ---------------------------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFR 157
A+ + E R G H +
Sbjct: 129 VRGPGKAPFVPRFEHPDLRLDEKTNKVAVDQYVKALEIRRICHEMVALFGGKMPHVSGQV 188
Query: 158 PGGVHQDIPPELVEDIGCWCDSFPSALNDI-----------SDLLTGNRIFKQRNVNIGT 206
GG + E + + + + L + + G
Sbjct: 189 VGGATEIPTKEKLAEYASRFKQVQKFIEETYVPTVYLIGSVYKDLFKIGGGYKNAMAYGV 248
Query: 207 VKLEDAWGWGFSGVMIRGSG---------------AAWDLRKSQPYECYSELDFDIPIGK 251
++DA + G AW + K
Sbjct: 249 FPMDDAESEFLLKPGVYIDGKDAGFDQKLIKEYTKYAWYTDECSDLHPSKGKTIPDVHKK 308
Query: 252 HGDCYDRYLVRMMEMRESVKIIRQCV--------------------NRLLGKNKVGPVSA 291
+ + + E + R V ++ +
Sbjct: 309 DAYSFCKASRYNGKAVEVGPLARMWVHNPELSPMGKKQLKDLFGIEAKMFRDLGEDMAFS 368
Query: 292 SDPKIVPPKRADMK-------RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
+ V ++ + + Y + E EAP+G Y+
Sbjct: 369 LMGRHVARAEEAYMVANAIQDAWLKEVQPGEETYVKTEIPESAEGLGLTEAPRGSLLHYI 428
Query: 345 ISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLA------DVSAILGSLDI 389
++ + +E G + D+S I+ S D
Sbjct: 429 NIKDSKT-ANYQMIPATLWNSTPRDDKGHRGTIEEALVGTPVPDPKNPVDISRIIRSFDP 487
>gi|217966524|ref|YP_002352030.1| nickel-dependent hydrogenase large subunit [Dictyoglomus turgidum
DSM 6724]
gi|217335623|gb|ACK41416.1| nickel-dependent hydrogenase large subunit [Dictyoglomus turgidum
DSM 6724]
Length = 474
Score = 194 bits (494), Expect = 2e-47, Method: Composition-based stats.
Identities = 69/435 (15%), Positives = 122/435 (28%), Gaps = 62/435 (14%)
Query: 20 AHGVLRLILEL-DGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G R+ + L D VE H+ RG EK E + F + +R+ + P++
Sbjct: 13 IEGHARVTIHLNDDGKVESAFFHVD-QFRGFEKFSEGRHFSEMPVITERICGICPISHHL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV--------------- 123
A A A ++++G+EIP +L+R L I SH ++ A
Sbjct: 72 ASAKATDEIIGVEIPRTAKLLRELIHMGQIIQSHSMHFFELAGPDLILGWDADPKIRNVV 131
Query: 124 ----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
L + R+ E +G R+H + PGGV+ + P ++I D
Sbjct: 132 GLIQENPELALKAVKLRKFGQRIIELVAGRRIHPTFAVPGGVNSSLSPSARDEILSGIDE 191
Query: 180 FPSALNDISDLLTGN-RIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLR------ 232
+ + + K+ + G + G +
Sbjct: 192 MIGYIKEGIKIAEDFIEKNKELCDEFASFPTGYMGLVKEDGSLELYDGKIRFMDKDGNIL 251
Query: 233 ---KSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRL--------- 280
K Q Y Y + Y R +++
Sbjct: 252 KEFKPQYYLRYIGERVEDWTYLKFPYYKPLGYPNGVYRVGPLARLNIADKISTPLANEEF 311
Query: 281 -------LGKNKVGPVSASDPKIVP--PKRADMKRSMESLIHHFKLYTEGYHVPVGEVYA 331
GK G + +++ + +E + + V E
Sbjct: 312 KKFKSINNGKPVEGSIYYHYARLIETVYALERAREILEDPEVMSQNVLKMGEVTNEEGVG 371
Query: 332 AVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFL-------------CKGHQLA 378
VEAP+G + D + + + AM K L
Sbjct: 372 VVEAPRGTLIHHYWVDERGTIEKVNLIVSTGHNNWAMSKAVEMVAKAFVDGKNLKEGMLN 431
Query: 379 DVSAILGSLDIVFGE 393
V + D
Sbjct: 432 RVEGAIRCYDPCLSC 446
>gi|315106276|gb|EFT78252.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL030PA1]
Length = 386
Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats.
Identities = 98/393 (24%), Positives = 156/393 (39%), Gaps = 34/393 (8%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
KK ++ G HP G++ + +D +++ ++G LHRG EKL E + + Q
Sbjct: 26 KKYEVTRLDLGHLHPTRSGLVTIATTVDDDVIISSQVNVGTLHRGDEKLFEVRDYRQIPM 85
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
R D+ AP E A A+E +GI IP R IR L +E RI SH ++
Sbjct: 86 LASRHDWTAPFIGETGAAHAIEDAMGITIPTRVAWIRTLLAEFSRITSHFTFLSWVGHHC 145
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
E ++R SG+R+H R GG+ E +G W D +
Sbjct: 146 DDAGLENAIATAIENARRIWQRCSGNRIHPMITRIGGLRIHPESEWQPALGEWLDDANAL 205
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L + + + +G SG + R SG D R+ Y EL
Sbjct: 206 VTRLRTALDATVGVR----GVAVIPTNMIDRYGLSGPVSRASGVDLDTRRRT--AVYDEL 259
Query: 244 DFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+ + GD Y R + S + RQ ++RL + GP+ P + R
Sbjct: 260 KWPEVVIEPRGDAYSRLATLCNDAAVSSSLCRQILDRLPSLD--GPLETRLPTAIKAPRG 317
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
++E+L G G L S G P+R +R P +
Sbjct: 318 RTWTTIEALW-------------------------GRAGYLLESRGSTTPWRMALRTPTF 352
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
A++Q +E + G ++ DV A + SL G++D
Sbjct: 353 ANVQVLEAVLPGTRVDDVEATIASLGWTLGDLD 385
>gi|150017853|ref|YP_001310107.1| nickel-dependent hydrogenase, large subunit [Clostridium
beijerinckii NCIMB 8052]
gi|149904318|gb|ABR35151.1| nickel-dependent hydrogenase, large subunit [Clostridium
beijerinckii NCIMB 8052]
Length = 463
Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats.
Identities = 57/434 (13%), Positives = 115/434 (26%), Gaps = 63/434 (14%)
Query: 22 GVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYA 81
G L + E++G + + GLL RG EK++ ++ L AV + +R+ + A
Sbjct: 15 GFLEIKAEVEGNTIAKA-YASGLLFRGFEKMLIGRSPLDAVYFTERICGICSTAHSMAST 73
Query: 82 LAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA---------------- 125
LA+E L + + + IR + I +HL + +M
Sbjct: 74 LALEDALKVTVSLNDNYIRDILHGFEFIQNHLRHFYLLSMPSYVKISNIKLIEEQQYTDY 133
Query: 126 ----------LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGC 175
+ E G H GGV +I +E +
Sbjct: 134 RLPDKINKKIEQDYVKSIELSRLAHEGLALLGGKAPHNHGIFVGGVTVNIDAYKLEKVKS 193
Query: 176 WCDSFPSALND-----------ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRG 224
S + + + G + + +
Sbjct: 194 IIRKIESFVKNIMKEDVEIISKYYSDYFKKGQSYPYFMTYGVFDKYEDPEITYVKPGVMK 253
Query: 225 SGAAWDLR-----KSQPYECYSELDFDIPIG---KHGDCYDRYLVRMMEMRESVKIIRQC 276
+ L + Y Y + + + + + + E + R
Sbjct: 254 DNVKYPLELDKITEQIHYSWYKKDEGLEEVDLSKLDAYTFIKAPRYLGLPMEVGPLARLI 313
Query: 277 VNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV-GEVYAAVEA 335
V+ + K + + + + Y++P +
Sbjct: 314 VSGQYTNGHSCMDRNIARVLETEKIIGIMSKLIERVELRPNNQKAYNIPEKAYGAGLTDT 373
Query: 336 PKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA---------MEFLCKGHQLAD------V 380
+G G ++ D I P +L +E G +L + +
Sbjct: 374 TRGALGHWIEIDKN-VINHYNIITPTVWNLSPKDESNLPGTIEGALIGTKLNNIREPIEI 432
Query: 381 SAILGSLDIVFGEV 394
I+ S D
Sbjct: 433 GRIVRSFDPCVSCA 446
>gi|37787355|gb|AAP50523.1| Hox1H [Thiocapsa roseopersicina]
Length = 475
Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats.
Identities = 61/440 (13%), Positives = 110/440 (25%), Gaps = 69/440 (15%)
Query: 20 AHGVLRLILEL-DGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G R+ L+L D VE H+ RG EK E + + + R + P++
Sbjct: 13 IEGHARITLQLGDAGEVEDAKFHL-TQFRGFEKFCEGRPYREMPALTARTCGICPVSHVL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A A + LL + IP G+ +R + + SH L+ +
Sbjct: 72 ASNKACDHLLSVSIPPTGEKLRRIINLAQLTQSHALSFFHLSSPDLLLGWDSDPVSRNIF 131
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ E G ++H + PGGV + + E + +
Sbjct: 132 GVMRQDPALAKDGIRLRQIGQTIIETLGGKKIHPTWVVPGGVSEPLTQEKRDAMLKLIPE 191
Query: 180 FPSALNDISDLL-TGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA----------- 227
T FK + G+ G + G
Sbjct: 192 GLEIAKRTYAFFKTLVPKFKDEANHFGSQPTMFLSLVSPKGHLEHYDGFLRLKDAQGRIL 251
Query: 228 ------------------AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRES 269
+ K Y+ + + +G + +
Sbjct: 252 EDMVPPHEYERLIGEAVEDFSYMKFPYYKPHGYPNGIYRVGPLARLNNVDACGTPYADVA 311
Query: 270 VKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEV 329
+ + + M+R ++ E
Sbjct: 312 LAEFHMLQESGP-IASSFHYHYARLVEIIYALEMMERLLKDPTILDARVRARARSNRYEG 370
Query: 330 YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLAD---------- 379
EAP+G + D + + AM + Q+AD
Sbjct: 371 IGVAEAPRGILMHHYRIDDEGLITWVNLIIATGHNNLAMNQSIR--QVADAYVDGNNLQE 428
Query: 380 -----VSAILGSLDIVFGEV 394
V A++ D
Sbjct: 429 GMLNRVEAVIRCFDPCLSCA 448
>gi|124267991|ref|YP_001021995.1| HupV protein [Methylibium petroleiphilum PM1]
gi|124260766|gb|ABM95760.1| HupV protein [Methylibium petroleiphilum PM1]
Length = 485
Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats.
Identities = 69/481 (14%), Positives = 127/481 (26%), Gaps = 102/481 (21%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
GP + G L + L++ V + ++RG E+++ K A+ Y R+ +
Sbjct: 6 VGPFN-RVEGDLEVTLDIADGRVTSARVNAP-MYRGFEQILRGKNPHDALVYVPRICGIC 63
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP--- 129
++Q A A A+ L G+E+P GQ + + HL + M
Sbjct: 64 SVSQSVASARALADLGGLEMPPNGQHATNVILATENLADHLTHFYLFFMPDFTRPVYASR 123
Query: 130 ------------------LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
R++ +G H PGG + I
Sbjct: 124 AWHAEAERRFAPQTGEQTRAAIAARQRWFTLLGTLAGKWPHTQSIEPGGSTRPIEAAERV 183
Query: 172 DIGCWCDSFPSALN------------------DISDLLTGNRIFKQ-------------- 199
+ F + L ++ +
Sbjct: 184 RLLSRVREFRAFLERQLFAAPLEKVSSIASEAELWAWHAQDPWRGDFRLFLSMVKDAALE 243
Query: 200 RNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKS----------------------QPY 237
R L G G G R P
Sbjct: 244 RLGPGPGRYLSYGAYPQPDGGFELGGGVWHAQRAVLSRLDEAAIREDATHAWLADSAAPR 303
Query: 238 ECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQC------VNRLLGKNKVGPVSA 291
L +++ E+ E+ I RQ V + ++ +
Sbjct: 304 HPLDGLTLPDADKPDAYTWNKAPRLAGEVVETGAIARQLASAQPLVRDAVARHGGTVYTR 363
Query: 292 SDPKIVPPKRA--DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGG 349
+++ R M+R ++ L H G EA +G G ++++
Sbjct: 364 VLARLIELARVVPMMERWLQQLQSGESYCVPSPHFTEGVGVGLSEAARGSLGHWIVAI-R 422
Query: 350 NKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLAD-------VSAILGSLDIVFGE 393
+ +I AP + A+E +G + + V I+ S D
Sbjct: 423 GQIANYQIVAPTTWNFSPRDAAGTPGALEQALEGAPVQEGELTPVAVQHIVRSFDPCMVC 482
Query: 394 V 394
Sbjct: 483 T 483
>gi|50841765|ref|YP_054992.1| putative NADH dehydrogenase [Propionibacterium acnes KPA171202]
gi|50839367|gb|AAT82034.1| putative NADH dehydrogenase [Propionibacterium acnes KPA171202]
Length = 396
Score = 194 bits (492), Expect = 3e-47, Method: Composition-based stats.
Identities = 98/393 (24%), Positives = 156/393 (39%), Gaps = 34/393 (8%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
KK ++ G HP G++ + +D +++ ++G LHRG EKL E + + Q
Sbjct: 36 KKYEVTRLDLGHLHPTRSGLVTIATTVDDDVIISSQVNVGTLHRGDEKLFEVRDYRQIPM 95
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
R D+ AP E A A+E +GI IP R IR L +E RI SH ++
Sbjct: 96 LASRHDWTAPFIGETGAAHAIEDAMGITIPTRVAWIRTLLAEFSRITSHFTFLSWVGHHC 155
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
E ++R SG+R+H R GG+ E +G W D +
Sbjct: 156 DDAGLENAIATAIENARRIWQRCSGNRIHPMITRIGGLRIHPESEWQPALGEWLDDANAL 215
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + L + + + +G SG + R SG D R+ Y EL
Sbjct: 216 VTRLRTALDATVGVR----GVAVIPTNMIDRYGLSGPVSRASGVDLDTRRRT--AVYDEL 269
Query: 244 DFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+ + GD Y R + S + RQ ++RL + GP+ P + R
Sbjct: 270 KWPEVVIEPRGDAYSRLATLCNDAAVSSSLCRQILDRLPSLD--GPLETRLPTAIKAPRG 327
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
++E+L G G L S G P+R +R P +
Sbjct: 328 RTWTTIEALW-------------------------GRAGYLLESRGSTTPWRMALRTPTF 362
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
A++Q +E + G ++ DV A + SL G++D
Sbjct: 363 ANVQVLEAVLPGTRVDDVEATIASLGWTLGDLD 395
>gi|300087160|ref|YP_003757682.1| nickel-dependent hydrogenase large subunit [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299526893|gb|ADJ25361.1| nickel-dependent hydrogenase large subunit [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 523
Score = 194 bits (492), Expect = 3e-47, Method: Composition-based stats.
Identities = 63/497 (12%), Positives = 120/497 (24%), Gaps = 124/497 (24%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L++ + ++ +V+ G + RG E ++ A Y R+ V P +
Sbjct: 12 IEGHLKIEVVVENGVVKDAH-SSGTMFRGFEIFLKGHNPTDAQHYTQRICGVCPTSHGMT 70
Query: 80 YALAVEKLLGIE--IPIRGQLIRVLYSEIGRILS---HLLNVTTQ--------------- 119
L ++ G++ IP G++IR L I S H ++
Sbjct: 71 AVLNLDSAFGVDDKIPDNGRIIRNLIQGANYIQSHILHFYHLAALDYVDVTAVADYSGND 130
Query: 120 ------------------AMDVGALTP-------------------PLWGFEEREKLMVF 142
+G P + R
Sbjct: 131 AGLTKVQQFISRALAAGDYSMLGPFWPRYEGDYRLSKAINVKAVQDYVEALNMRRIAHEM 190
Query: 143 YERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS--DLLTGNRIFKQR 200
SG H+ GG Q + + +++ D++ +
Sbjct: 191 SAIFSGRMPHSPALVVGGATQGPTEDNIVAFRAKLTKLRKFTDEVYIPDVIAVAEAYSDH 250
Query: 201 NV-NIGTVKLEDAWGWGFSG------------VMIRGSG--------------AAWDLRK 233
GT + + G SG +
Sbjct: 251 FDQGFGTGNVLSYGVFDLDGKEKDLAKRQRFLPQGIASGLSLGTFDPQKITEDVKYGWFS 310
Query: 234 SQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRL------------- 280
S D P + + ++ E + R V L
Sbjct: 311 SGSGYPGDTDTVDDPNKTGAYTWLKAPRYGGDVYEVGPLPRVLVAYLSGDPTAQKLVNDT 370
Query: 281 ------LGKNKVGPVSASDPKIVPPKR--ADMKRSMESLIHHFKLYTEGYHVPVGEVYAA 332
+ + + K M + ++ L + +
Sbjct: 371 LAHFGAPASALFSTLGRHAARALECKMVADAMDKWLDELKPGEPVNVTADIPDSAQGMGL 430
Query: 333 VEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLAD---- 379
EAP+G G ++ K R + P + A+E G ++ D
Sbjct: 431 WEAPRGALGHWISIK-DQKIERYQCVVPSTWNCSPRDNNDQPGALEQALIGAKVKDEANP 489
Query: 380 --VSAILGSLDIVFGEV 394
V I+ + D
Sbjct: 490 FEVVRIVRAFDPCLACA 506
>gi|58700038|ref|ZP_00374589.1| NADH dehydrogenase I, D subunit [Wolbachia endosymbiont of
Drosophila ananassae]
gi|58533443|gb|EAL57891.1| NADH dehydrogenase I, D subunit [Wolbachia endosymbiont of
Drosophila ananassae]
Length = 174
Score = 194 bits (492), Expect = 3e-47, Method: Composition-based stats.
Identities = 108/176 (61%), Positives = 136/176 (77%), Gaps = 4/176 (2%)
Query: 197 FKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCY 256
+KQR V I + ++ A WGFSG M+R +G AWDLRKSQPYE Y +LDFDIPIG++GDCY
Sbjct: 2 WKQRTVGISEISIKQALDWGFSGPMLRAAGLAWDLRKSQPYEIYDQLDFDIPIGQNGDCY 61
Query: 257 DRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFK 316
DRYLVRM E+R+S+ +++QC+ ++ G + D KI PP RA+MK+SME+LIHHFK
Sbjct: 62 DRYLVRMAEIRQSISLVKQCIEKM----PEGQIKTEDRKISPPSRAEMKKSMEALIHHFK 117
Query: 317 LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLC 372
LY+EGYHVP GE YA VEAPKGEFGVY++SDG N+PYRC+IRAPG+AHL
Sbjct: 118 LYSEGYHVPEGEAYAVVEAPKGEFGVYIVSDGTNRPYRCRIRAPGFAHLHLFAKAV 173
>gi|320160665|ref|YP_004173889.1| bidirectional hydrogenase H subunit [Anaerolinea thermophila UNI-1]
gi|319994518|dbj|BAJ63289.1| bidirectional hydrogenase H subunit [Anaerolinea thermophila UNI-1]
Length = 475
Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats.
Identities = 67/438 (15%), Positives = 116/438 (26%), Gaps = 68/438 (15%)
Query: 20 AHGVLRLILEL-DGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G R+ + L D V+ H+ + RG EK ++ + F + R + P++
Sbjct: 13 IEGHARVSIFLNDDGSVKDAQVHVTQV-RGFEKFVQGRPFYEMPSLTARTCGICPVSHLI 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV--------------- 123
A A A +++L + IP +R + + I SH LN +
Sbjct: 72 ASAKACDQILSVRIPPTAISLRRILNLGQIIQSHALNFFYLSSPDLLLGMDADPAKRNIL 131
Query: 124 ----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ ER +G R+H A+ PGGV + P E I
Sbjct: 132 GVAQEHPQFARDGIRLRQFGQQVIERLAGKRIHPAWVIPGGVATPLDPSAREQILKEIPE 191
Query: 180 FPSALNDISDLLTGNRIFKQRN-VNIGTVKLEDAWGWGFSGVMIRGSGA----------- 227
S + D N Q G + G
Sbjct: 192 AKSIIQRTLDWYKKNLNAYQEYIRTFANFPSLFLGLVSKEGRLEHYHGYLRVVTARGSIL 251
Query: 228 ------------------AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRES 269
W KS Y+ +G +
Sbjct: 252 ADQLSVENYADYIGESVEPWSYLKSPYYKPLGYPGGMYRVGPLARLNIANECGTPLADQE 311
Query: 270 VKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEV 329
+ C+++ + + +++ ++ V E
Sbjct: 312 LAEF-HCLDK-GAVLSSFHYHYARLIEILYAIERIEQLLDDPDILSTNVRAHAEVNNLEG 369
Query: 330 YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME--------------FLCKGH 375
EAP+G + D + + AM L +G
Sbjct: 370 IGVSEAPRGTLIHHYKVDEHGLIQWANLIIASGHNNLAMNRGVLQAARYYVKSSQLTEG- 428
Query: 376 QLADVSAILGSLDIVFGE 393
L V A++ + D
Sbjct: 429 MLNRVEAVIRAFDPCLAC 446
>gi|291614074|ref|YP_003524231.1| nickel-dependent hydrogenase large subunit [Sideroxydans
lithotrophicus ES-1]
gi|291584186|gb|ADE11844.1| nickel-dependent hydrogenase large subunit [Sideroxydans
lithotrophicus ES-1]
Length = 495
Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats.
Identities = 69/436 (15%), Positives = 131/436 (30%), Gaps = 62/436 (14%)
Query: 20 AHGVLRLILELD-GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ L LD + V +V HI + RG EK I+ + + +A RL + P++
Sbjct: 25 VEGHGKVTLLLDENDRVHQVRLHI-VEFRGFEKFIQGRPYWEAPVMVQRLCGICPVSHHL 83
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV--------------- 123
A + A++ ++G + + +R L + SH L+
Sbjct: 84 AASKAMDMIVGATLTPTAEKVRRLMHYGQILQSHALHFFHLCSPDLLFGFDSDVAKRNIV 143
Query: 124 ----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ +G R+H PGGV++++ E + + +
Sbjct: 144 GIAAAYPDIAKQGVLLRKFGQEVIRITAGKRIHGTGSVPGGVNKNVSFEERDYLLKDIEQ 203
Query: 180 FPSALNDISDLLTG-NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSG--AAWDLR---- 232
+ D + + G K G + G A D+
Sbjct: 204 IVAWSKDAVGIARQLFEQNLDLYNDFGRFKAHTLNLVRADGALDLYHGGLRARDMEGQTL 263
Query: 233 -KSQPYECYSELDFDI--PIGKHGDCYDRYLVRMMEMRESVKIIR------------QCV 277
Y Y ++ F+ P + R L + R +
Sbjct: 264 FDHHDYGHYWDVIFEDVKPWSYMKFPFLRSLGPENGWYRVGPLTRVTQCDFIPTPLAEAQ 323
Query: 278 NRLLGKNKVGPVSASDPKIVPPKRADMKRSME--SLIHHFKLYTEGYHVPVG----EVYA 331
+ G + + + +M S E + H V G
Sbjct: 324 RQEFLAFNGGSATGATLGFHWARMIEMLHSAEVIRDLLHDPDLQGSELVSQGARQERGVG 383
Query: 332 AVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK--------GHQLAD---- 379
+EAP+G + D ++ RC + + QAM + G +L +
Sbjct: 384 VIEAPRGTLIHHYKVDDNDQIVRCNLIVSTTHNNQAMNEAIRSVARQYIDGKKLTEGLLN 443
Query: 380 -VSAILGSLDIVFGEV 394
+ + + D
Sbjct: 444 HIEVAIRAFDPCLSCA 459
>gi|302874043|ref|YP_003842676.1| nickel-dependent hydrogenase large subunit [Clostridium
cellulovorans 743B]
gi|307689703|ref|ZP_07632149.1| [Ni/Fe] hydrogenase, large subunit [Clostridium cellulovorans 743B]
gi|302576900|gb|ADL50912.1| nickel-dependent hydrogenase large subunit [Clostridium
cellulovorans 743B]
Length = 466
Score = 193 bits (490), Expect = 5e-47, Method: Composition-based stats.
Identities = 55/439 (12%), Positives = 126/439 (28%), Gaps = 69/439 (15%)
Query: 22 GVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYA 81
G L++ + ++ +V G L RG E++++ ++ L A+ + +R+ + A
Sbjct: 15 GFLQIEITIENNLVTEAKNR-GFLFRGFEEMLKGRSPLDAIYFTERICGICSTAHGFVSA 73
Query: 82 LAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG----------------- 124
+A+E L +++ G ++R + + +H+ + M
Sbjct: 74 IALEDALKVKVDENGTILREIMHGCEFLQNHIRHFYQFTMPDYAKIDAVSKDEERKYKVT 133
Query: 125 ------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
+ F+ G H GG +I + ++ +
Sbjct: 134 KDYTKIFNRHYMESFKYSRDAHKMLAILGGKAPHNHGIFVGGATINIDASRIIELKALLN 193
Query: 179 SFPSALNDI---------------------------SDLLTGNRIFKQRNVNIGTVKLED 211
+ +N + V GT+ +
Sbjct: 194 GIKTFVNTAMLPDVRAISYYYKEDFVHGHGYTNFLSYGAFDSDVHSDISYVKAGTLIDDK 253
Query: 212 AWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVK 271
+ S + S + + K + + D+ K+ + + E
Sbjct: 254 LEPFDASKISEEISHSYYSDEKEILSQGDNNWKVDVN-KKNAYTWVKAARYRNLPLEVGP 312
Query: 272 IIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV-GEVY 330
+ RQ ++ + K D+ + + E + +P +
Sbjct: 313 LARQWISGEYKNGVSTMDRTIARVLEAKKICDILDKLIDRVKLTPTVQEKWEIPDSAKGI 372
Query: 331 AAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA---------MEFLCKGHQLADV- 380
+ +G G ++ +G K I P ++ +E G + DV
Sbjct: 373 GLRDTTRGALGHWINIEGK-KIANYNIITPSGWNISPTDLMGRNGVVEKALIGTFVEDVK 431
Query: 381 -----SAILGSLDIVFGEV 394
S I+ S D
Sbjct: 432 NPYELSRIIRSFDPCVSCA 450
>gi|182678132|ref|YP_001832278.1| nickel-dependent hydrogenase large subunit [Beijerinckia indica
subsp. indica ATCC 9039]
gi|182634015|gb|ACB94789.1| nickel-dependent hydrogenase large subunit [Beijerinckia indica
subsp. indica ATCC 9039]
Length = 488
Score = 193 bits (490), Expect = 5e-47, Method: Composition-based stats.
Identities = 69/480 (14%), Positives = 128/480 (26%), Gaps = 101/480 (21%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
GP + G L + LE++ +V L RG E+++E + A+ R+ +
Sbjct: 10 VGPFN-RVEGDLEVRLEMEDGVVT-AAFVNATLFRGFERILEGRDPSDALVIAPRICGIC 67
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLW- 131
++Q HA ALA+ ++GI GQ+ + + HL + M A P
Sbjct: 68 SVSQSHAAALALAGVMGIAPARNGQIAANITLATENLADHLTHFHLFFMPDFARGPYRDR 127
Query: 132 --------------------GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
+ R L+ +G H +PGG + +
Sbjct: 128 PWFDRAEARFAALRGASVRPMMQTRALLLHVMGLIAGHWPHTLAIQPGGFSRGVDARDKI 187
Query: 172 DIGCWCDSFPSALNDISD-------LLTGNRIFKQRNVNIG------------------- 205
+ +AL + + G
Sbjct: 188 KLLAILSGVRAALEERLFGTALERVAALADPEELSAWRMHGPEGDFRLFLEIAADLHLET 247
Query: 206 -------TVKLEDAWGWGFSGVMIRGSG--------------------AAWDLRKSQPYE 238
+ G G G + SG A + +
Sbjct: 248 LGRAYDRFLCYGAYPGGGADGAPLYPSGLFAHGLEHPLDLEAIAEDHTYARMENRGLMHP 307
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL------GKNKVGPVSAS 292
+ + G + + E E+ + RQ ++ + S
Sbjct: 308 PFMGSTSPDGADEQGYSWCKAPRLSNEPCETGALARQVMDGQPLVRALVARAGGNVFSRV 367
Query: 293 DPKIVPPKR--ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGN 350
+++ R M+ ++L + G EA +G G +L
Sbjct: 368 IARLLEVARVLIQMETWTKALEPGAPWCVPAGTIGTGRAVGLTEAARGALGHWLRV-ENG 426
Query: 351 KPYRCKIRAPGYAHLQ---------AMEFLCKGHQLA-------DVSAILGSLDIVFGEV 394
+ +I AP + +E G + V I+ S D
Sbjct: 427 RIAGYQIIAPTTWNFSPRDARGLPGPLERALIGAPVQSGETTPVSVQHIVRSFDPCMACT 486
>gi|330945790|gb|EGH47198.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas syringae pv. pisi str. 1704B]
Length = 216
Score = 192 bits (489), Expect = 6e-47, Method: Composition-based stats.
Identities = 86/220 (39%), Positives = 122/220 (55%), Gaps = 4/220 (1%)
Query: 177 CDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQP 236
+ P A I N I K R V + T ++A WG +G +R +G +DLRK++P
Sbjct: 1 VEWLPEAPRRIHQGCAENSILKGRTVGVATYNTKEALEWGVTGAGLRSTGCDFDLRKARP 60
Query: 237 YECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKI 296
Y Y +F++P+ +GD YDR +VR+ EMR+S+KII QC+ + GP A P
Sbjct: 61 YSGYENFEFEVPLAANGDAYDRCMVRVEEMRQSIKIIDQCMRNM----PEGPYKADHPLT 116
Query: 297 VPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCK 356
PP + + +E+LI HF + G +P E + +EA KG YL SDGG YR +
Sbjct: 117 TPPPKERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGGTMSYRTR 176
Query: 357 IRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
IR P Y HLQ + + KG +AD+ A LGS+D V +VDR
Sbjct: 177 IRTPSYPHLQQIPSVIKGSMVADLIAYLGSIDFVMADVDR 216
>gi|167042383|gb|ABZ07110.1| putative Respiratory-chain NADH dehydrogenase, 49 Kd subunit
[uncultured marine crenarchaeote HF4000_ANIW97P9]
Length = 272
Score = 192 bits (489), Expect = 7e-47, Method: Composition-based stats.
Identities = 87/300 (29%), Positives = 140/300 (46%), Gaps = 28/300 (9%)
Query: 97 QLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYF 156
+ +RV+ SE+ R + + + +G T +W +RE ++ E+ +G+R+ +YF
Sbjct: 1 KYLRVIASELNRCVYTQYWLAIYGIFLGHSTMFMWPMGDRELVIDLLEKMTGARVTHSYF 60
Query: 157 RPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWG 216
PGGV D PP + + F L + +D+ N I R + G + EDA G
Sbjct: 61 VPGGVRNDTPPNFEDVCLRQVNYFEKRLKEYADIFYDNPILISRTKDTGILSREDAIKLG 120
Query: 217 FSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQC 276
+G ++R SG +D+RK +PY+ Y ELDF + K GD Y R + ++M ES +IIR
Sbjct: 121 TTGSVLRASGVDFDIRKKEPYDVYEELDFQTNVLKEGDSYARSKIPWLDMFESCRIIRDA 180
Query: 277 VNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAP 336
+ ++ V +PK EVY VE+
Sbjct: 181 LQKMPKSGSVRIKLKPNPKGG----------------------------DTEVYRRVESG 212
Query: 337 KGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+G G++++S G +PYR KI + +L AM L G L ++ A+ SL+ E DR
Sbjct: 213 RGSLGMHIVSRGKPQPYRLKISVGSFRNLIAMPHLLTGEMLGNMPAVYWSLNYWPVEADR 272
>gi|110589190|gb|ABG77104.1| NADH dehydrogenase I [Endoriftia persephone 'Hot96_1+Hot96_2']
Length = 270
Score = 192 bits (488), Expect = 8e-47, Method: Composition-based stats.
Identities = 127/258 (49%), Positives = 167/258 (64%), Gaps = 27/258 (10%)
Query: 81 ALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLM 140
LA+EKLLG+E+P+R Q IR ++ EI RIL+HL+ + T A+DVGA+T L+ F ERE LM
Sbjct: 1 VLAIEKLLGVEVPLRAQYIRTMFDEITRILNHLMWLGTHALDVGAMTVFLYAFREREDLM 60
Query: 141 VFYERASGSRMHAAYFRPGGVHQDIPPEL-------------------------VEDIGC 175
YE SG+RMHAAY+RPGGV++D+P ++ ++ IG
Sbjct: 61 DCYEPVSGARMHAAYYRPGGVYRDLPDQMPQYQQSQWTTGRDVGRRNEARQGSLLDFIGD 120
Query: 176 WCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQ 235
+ D FP+ +++ LLT NRI+KQR V IG V E A GF+G M+RGSG WDLRK Q
Sbjct: 121 FADRFPALVDEYETLLTDNRIWKQRTVGIGVVSPERALQLGFTGPMLRGSGVEWDLRKKQ 180
Query: 236 PYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPK 295
Y Y ++DFDIP+G GD YDRYLVR+ E+R+S +II+QCV L +N GPV D K
Sbjct: 181 SYAAYDKVDFDIPVGVTGDSYDRYLVRIEELRQSNRIIKQCVEWL--RNNPGPVMVDDHK 238
Query: 296 IVPPKRADMKRSMESLIH 313
I PP R+DMK ME L+
Sbjct: 239 IAPPSRSDMKGDMEGLMP 256
>gi|114777306|ref|ZP_01452317.1| NAD-reducing hydrogenase, beta subunit [Mariprofundus ferrooxydans
PV-1]
gi|114552451|gb|EAU54934.1| NAD-reducing hydrogenase, beta subunit [Mariprofundus ferrooxydans
PV-1]
Length = 486
Score = 192 bits (488), Expect = 8e-47, Method: Composition-based stats.
Identities = 63/441 (14%), Positives = 133/441 (30%), Gaps = 72/441 (16%)
Query: 20 AHGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ L +D E V HI + RG EK I+ + + + + RL + P++
Sbjct: 17 VEGHGKITLLMDAENRVHEARLHI-VEFRGFEKFIQGRPYGEVPTFVQRLCGICPVSHHL 75
Query: 79 AYALAVEKLLGIE-IPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV-------------- 123
A A AV++L+G++ + +R L + SH L+ +
Sbjct: 76 AAAKAVDQLVGVDALTPTSLKLRQLLHFGQTLQSHALHFFHLSSPDLLFGFGSDVAQRNI 135
Query: 124 -----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
L G + R+ SG R+H + PGG+++ + E +
Sbjct: 136 VGVIEKHPELALKGVKLRKYGQQIIAAISGKRVHGSAAVPGGMNKSLSREERNVLLAGIA 195
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSG------------ 226
+ L + N + G + G + G
Sbjct: 196 DIKQWAQEAVALNEQVHMSHPENHSFGALNTHFLGMISPKGELEIYHGGLRARDPDGGTL 255
Query: 227 -----------------AAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRES 269
W K + + + +G + ++ E+
Sbjct: 256 FDQFDYRGYQEIIREEVRPWSYMKFPYFTALGKENGWYRVGPLARVNNCDVISTPLAEEA 315
Query: 270 VKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHV---PV 326
+ R + G ++ +++ S+E L++ + V
Sbjct: 316 RQRFRAFAD---GGFVQDTLAYHWARMIETLYCA--ESIELLLNDEDISGNDLVVTGEKR 370
Query: 327 GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK--------GHQLA 378
E +EAP+G + D + + ++ QAM + G+++
Sbjct: 371 SEGIGVIEAPRGTLFHHYKIDEQGLIEKANLIVSTTSNNQAMNESVRSVANEYLDGNEIT 430
Query: 379 D-----VSAILGSLDIVFGEV 394
+ + + + D
Sbjct: 431 EGLLNHLEVAVRAYDPCLSCA 451
>gi|255525087|ref|ZP_05392032.1| nickel-dependent hydrogenase large subunit [Clostridium
carboxidivorans P7]
gi|296188503|ref|ZP_06856891.1| nickel-dependent hydrogenase [Clostridium carboxidivorans P7]
gi|255511240|gb|EET87535.1| nickel-dependent hydrogenase large subunit [Clostridium
carboxidivorans P7]
gi|296046767|gb|EFG86213.1| nickel-dependent hydrogenase [Clostridium carboxidivorans P7]
Length = 466
Score = 192 bits (488), Expect = 8e-47, Method: Composition-based stats.
Identities = 63/441 (14%), Positives = 118/441 (26%), Gaps = 73/441 (16%)
Query: 22 GVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYA 81
G L + +E++ + V G+L RG E ++E + L A+ + +R+ + +
Sbjct: 15 GPLSIEVEIEKNKIVNVK-SSGVLFRGFESMLEGRPPLDAIYFTERICGICSTAHGVVAS 73
Query: 82 LAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL--------------- 126
LA+E L ++ G +R I + + +
Sbjct: 74 LALEDALKVKPDENGVRVRDFAHGADFIQNIIRQICLFVFPDYVKIKEVPGSIDYDFRLP 133
Query: 127 --------TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVED------ 172
L E G H+ GG ++ +
Sbjct: 134 DKLTRKISEDYLKALEYSRFAHEMVAIIGGKAPHSHGVFVGGTTANLDASKIIRLKYLLE 193
Query: 173 ----------------IGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWG 216
I + + +LLT + V
Sbjct: 194 QIYEFICSDMVEDINIISAYYPEYFKMGAGTKNLLTFGLFNDLPEKELVYVYPSVYIDDK 253
Query: 217 FSG--VMIRGSGAAWDLRKSQ-----PYECYSELDFDIPIGKHGDCYDRYLVRMMEMRES 269
SG V G + K+ P E SELD P + + E+ +
Sbjct: 254 KSGLDVDAIKEGVEYSWYKNTKSNTVPSEKPSELDIKKP---GAYTFVKAPRYKGEVVQV 310
Query: 270 VKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV-GE 328
+ R ++ + + ++ + LI Y +P E
Sbjct: 311 GPLARMILSDNYKYSISTMDRLIARVLEGKLLSEKMLKLLDLITPTNAVQNQYIIPESAE 370
Query: 329 VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLAD 379
+A +G G ++ I P +L A+E G ++ +
Sbjct: 371 GKGLYDAVRGALGHWIKI-ENGVIKNYDIITPTVWNLSPKDSMLQHGAIEESLIGTEIEN 429
Query: 380 V------SAILGSLDIVFGEV 394
V I+ S D
Sbjct: 430 VKSPVEIGRIIRSFDPCISCA 450
>gi|159898164|ref|YP_001544411.1| NADH-ubiquinone oxidoreductase subunit 49kDa [Herpetosiphon
aurantiacus ATCC 23779]
gi|159891203|gb|ABX04283.1| NADH-ubiquinone oxidoreductase chain 49kDa [Herpetosiphon
aurantiacus ATCC 23779]
Length = 368
Score = 192 bits (488), Expect = 9e-47, Method: Composition-based stats.
Identities = 81/386 (20%), Positives = 138/386 (35%), Gaps = 32/386 (8%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
S+ + GP HP +R++L ++GE + V+ G +RG + + T Q +
Sbjct: 12 SYVLPLGPFHPDWQTPMRMVLRVEGEQIADVEFRDGYTNRGISERLTRTTIPQGLHLVSH 71
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ + LA+E+LL I R +R+L E+ R HL + +G
Sbjct: 72 ICAADSHAHSLGFCLALEQLLKINASERAAALRLLACEVERATVHLSTMKEVLTILGLQR 131
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
+ L + G+ Y PGGV QD+ E + +
Sbjct: 132 DAEHVQKLHHGLFEVMQHLCGTSSPPNYIVPGGVRQDLSSTEQESMALQFRRLERLMYRF 191
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
D +R +R V +G + E A +G G M R +G +D R + Y Y++
Sbjct: 192 VDRFIDHRGVLRRCVGVGVLSREAAEQFGVRGPMARAAGIGFDARIDRAYGAYAQFPPSR 251
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
+ GD Y R ++ +E ES+K+ + + L + G
Sbjct: 252 VTQERGDVYARLVIFSLEAFESLKLAIRVLANLPSGDWAGN------------------- 292
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
VP G V + +E+ +G + S+G K +I AP
Sbjct: 293 ------------APDSVPQGSVTSNIESARGTLRYTVQSNG-VKLTSVRIDAPRQFDRLI 339
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGE 393
+ G + D I+ S
Sbjct: 340 ARTILAGMNIDDAPLIIASASACTAC 365
>gi|148379800|ref|YP_001254341.1| [Ni/Fe] hydrogenase, large subunit [Clostridium botulinum A str.
ATCC 3502]
gi|153932510|ref|YP_001384097.1| [Ni/Fe] hydrogenase, large subunit [Clostridium botulinum A str.
ATCC 19397]
gi|153936652|ref|YP_001387637.1| [Ni/Fe] hydrogenase, large subunit [Clostridium botulinum A str.
Hall]
gi|168180413|ref|ZP_02615077.1| [Ni/Fe] hydrogenase, large subunit [Clostridium botulinum NCTC
2916]
gi|226949081|ref|YP_002804172.1| [Ni/Fe] hydrogenase, large subunit [Clostridium botulinum A2 str.
Kyoto]
gi|148289284|emb|CAL83380.1| hydrogenase large subunit [Clostridium botulinum A str. ATCC 3502]
gi|152928554|gb|ABS34054.1| [Ni/Fe] hydrogenase, large subunit [Clostridium botulinum A str.
ATCC 19397]
gi|152932566|gb|ABS38065.1| [Ni/Fe] hydrogenase, large subunit [Clostridium botulinum A str.
Hall]
gi|182668832|gb|EDT80810.1| [Ni/Fe] hydrogenase, large subunit [Clostridium botulinum NCTC
2916]
gi|226842391|gb|ACO85057.1| [Ni/Fe] hydrogenase, large subunit [Clostridium botulinum A2 str.
Kyoto]
gi|322806078|emb|CBZ03645.1| [Ni/Fe] hydrogenase, group 1, large subunit [Clostridium botulinum
H04402 065]
Length = 471
Score = 192 bits (488), Expect = 9e-47, Method: Composition-based stats.
Identities = 59/442 (13%), Positives = 120/442 (27%), Gaps = 71/442 (16%)
Query: 22 GVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYA 81
G L + ++++ I+ + GLL RG EK++E + L ++ + +R+ + A
Sbjct: 15 GFLEIKVKVEDNIIVDGE-TSGLLFRGFEKMLEGRPPLDSIYFTERICGICSTAHATAST 73
Query: 82 LAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL--------------- 126
LA+E L I I IR + I +HL +
Sbjct: 74 LALENALNITPSINDIYIRDMMHGFEFIQNHLRQFYCFTVPSYVNLPNIRPIYPQEYSDF 133
Query: 127 -----------TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGC 175
+ G + G H+ GGV +I + I
Sbjct: 134 RLPKKLNERISSHYEEGIKYSRLAHEALAVLGGKAPHSHGIFVGGVTVNIDSYKLTKIQS 193
Query: 176 WCDSFPSAL------------NDISDLL-TGNRIFKQRNVNIGTVKLEDAWGWGFSGVMI 222
+ + + GN + + + + GV+I
Sbjct: 194 ILKAIKKFVNIYMLEDMNIIAQYYPEYFNLGNTYGNFMSFGVFDKYKDKNISYVKPGVII 253
Query: 223 RGSGAAWDLRKSQP---YECY----------SELDFDIPIGKHG-DCYDRYLVRMMEMRE 268
+D K Y Y ++ + + K G + + E
Sbjct: 254 NNKLENFDRDKITENIRYAWYVSDTIIENPIMNNEYTVDLKKEGAYSFVKAPRYADLPME 313
Query: 269 SVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGE 328
+ R + + K ++ ++ I Y++P G
Sbjct: 314 VGPLARLKIAGEYTGGNSSMDRNIARVLETKKIINILYNISEKIQLLSNNQSAYNIPEGA 373
Query: 329 -VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA---------MEFLCKGHQLA 378
++ +G ++ I P ++ E G ++
Sbjct: 374 FGEGLIDTTRGALSHFIKI-ENKTIKYYNIITPTAWNISPKDSKGTRGVGEKSLIGSKID 432
Query: 379 DVS------AILGSLDIVFGEV 394
++ I+ S D
Sbjct: 433 NIEKPVEIGRIIRSFDPCISCA 454
>gi|90425258|ref|YP_533628.1| nickel-dependent hydrogenase, large subunit [Rhodopseudomonas
palustris BisB18]
gi|90107272|gb|ABD89309.1| nickel-dependent hydrogenase, large subunit [Rhodopseudomonas
palustris BisB18]
Length = 480
Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats.
Identities = 68/478 (14%), Positives = 122/478 (25%), Gaps = 97/478 (20%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
I GP + G L + L++D +V + L+RG E+++E + L A+ R+
Sbjct: 4 ITVGPFN-RVEGDLEVRLDIDDGVVVSAEVTAP-LYRGFEQILEGRPSLDALTLAPRICG 61
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL---- 126
+ ++Q A A+ + G+ G + HL + M A
Sbjct: 62 ICSVSQSMAAVAALRAVDGLHPAPNGLHAANIAHAAENAADHLTHFYVFFMPDFARDSYA 121
Query: 127 -----------------TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL 169
T R +L+ +G H+ F+PGG + I
Sbjct: 122 AWPWHPAVAERFTATRGTAAREVLPARARLLEIMGLIAGKWPHSLAFQPGGTTRAIGLGE 181
Query: 170 VEDIGCWCDSFPSALNDISD------------------------------LLTGNRIFKQ 199
+ F L I L + +
Sbjct: 182 RVRLLSIIADFRGFLESIVFGDDLEAVLALRSAAALESWRDGRIGDFARFLAIADDLALD 241
Query: 200 RNVNIGTVKLEDAWGWGFSGVMIRG-------------------SGAAWDLRKSQPYECY 240
+ T + G + + + E
Sbjct: 242 KLGRGATSLMSFGAYQGLEAPLFAAGLYDPATSTPRVLDIDAITEDVSHAWMRDTAAEPA 301
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
G + + E + RQ V+ + + +
Sbjct: 302 LAQTLPDADRPGGYSWCKAPRLDSRPIEVGALARQAVDGDALIRDLVRRHGPNVRTRVIA 361
Query: 301 RA--------DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKP 352
R M R + V G VEA +G G ++ G +
Sbjct: 362 RLLETARLALAMDRWARQIALDAPFLDAAARVGEGAGIGLVEAARGSLGHWIELSGD-RI 420
Query: 353 YRCKIRAPGYAHLQ---------AMEFLCKGHQL-AD------VSAILGSLDIVFGEV 394
R +I AP + +E G + A+ V ++ S D
Sbjct: 421 RRYQIIAPTTWNFSPRDADGVAGPLEQALVGTPVGAEGAASVAVQHVVRSFDPCMVCT 478
>gi|51244011|ref|YP_063895.1| cytochrome-c3 hydrogenase (NiFeSe), large subunit [Desulfotalea
psychrophila LSv54]
gi|50875048|emb|CAG34888.1| related to cytochrome-c3 hydrogenase (NiFeSe), large subunit
[Desulfotalea psychrophila LSv54]
Length = 499
Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats.
Identities = 70/487 (14%), Positives = 129/487 (26%), Gaps = 114/487 (23%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + L + V+ G + RG E++++ ++ L A R+ V P++ A
Sbjct: 13 IEGHLAVSLNVQNNRVKDAQCT-GEMVRGFEQILQGRSPLDAQQIVQRICGVCPVSHGIA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILS---HLLNVTTQAM--------------- 121
LA E+ GI++P +L R + I S H +++
Sbjct: 72 SVLAQEQAYGIQLPENARLQRNIMLASNYIQSHITHFYHLSALDFIDITAILDYKGGDAF 131
Query: 122 -------------------------------------DVGALTPPLWGFEEREKLMVFYE 144
++ AL E R
Sbjct: 132 LLAMQNWVKAELASKNLFPAAPFLPRYQGRYLKDVDFNITALRNYFIALEMRATAHQLIA 191
Query: 145 RASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND-ISDLLTGNRIFKQRNVN 203
+G H A PGG+ + + + + +N+ + L ++
Sbjct: 192 IFAGKMPHMASIVPGGITEKVTTKKIIQCKSKLAQLKGFINNSYRNDLLAITAEFPSYLS 251
Query: 204 IGTVKLEDAWGWGFSGVMIRGSGA---------------AWDLRKSQPYECY-----SEL 243
IG F + S +++ + Y E
Sbjct: 252 IGKSCGNFLSFGAFGDANLEKSPLLPAGALLQGKLEEVDDISIKEDVSFSKYSSDSGREK 311
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGP--------------- 288
P + + E E + R V + G K+
Sbjct: 312 TVPEPHKSGAYSWIKAPRYRGEAMEVGPLARLMVAQAKGNKKMQEASNAFLQKTDLSLTD 371
Query: 289 ----VSASDPKIVPPKRADMK--RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGV 342
+ + + + K ME L + E +EAP+G G
Sbjct: 372 LDSCLGRHIARFIELEVIIEKCEEWMEQLRPDQPTAVDFNIPQQAEGRGMMEAPRGALGH 431
Query: 343 YLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLAD------VSAILGSL 387
++ K R + P + +E G +AD + I+ S
Sbjct: 432 WVTI-EKQKIGRYECIVPTTWNCSPKDDKQIPGPVEQSLIGTIVADKTNPLEAARIVRSY 490
Query: 388 DIVFGEV 394
D
Sbjct: 491 DPCLACA 497
>gi|89894344|ref|YP_517831.1| Hup-type Ni,Fe-hydrogenase large subunit [Desulfitobacterium
hafniense Y51]
gi|89333792|dbj|BAE83387.1| Hup-type Ni,Fe-hydrogenase large subunit [Desulfitobacterium
hafniense Y51]
Length = 518
Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats.
Identities = 68/492 (13%), Positives = 124/492 (25%), Gaps = 119/492 (24%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L++ +E+ +V IG ++RG E L+ + A +R V + A
Sbjct: 12 IEGHLKVEVEVTNGVVTDAK-SIGTMYRGFEPLLRGRDPRDATYVTERTCGVCAGSHGWA 70
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILS---HLLNVTTQAMDVG------------ 124
+LA+++ G ++P G+LIR L + H +++
Sbjct: 71 SSLALDQAFGAKVPTGGRLIRNLMIGAMWLHDHPLHFYHLSALDYLDITAVAKYQGQDPG 130
Query: 125 ---------------------------------------ALTPPLWGFEEREKLMVFYER 145
A++ L + K
Sbjct: 131 LLRVKDKISKLIAAGDTAPLTPRYEPDAFCVNDPELVTLAVSHYLHALNMQAKAKKMSAL 190
Query: 146 ASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS--DLLTG---------- 193
+G + H + GGV E+VE L +I D+LT
Sbjct: 191 FAGKQPHQSSIVAGGVTMLPNIEVVEQFRSMLLEQIDYLENIYLQDVLTFGTGPLLPLAQ 250
Query: 194 ------------------NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQ 235
+ K G V + G K
Sbjct: 251 AGVGGGYGNFLAYGGFGLDDEGKDFLFKQGIVLDGNLSNVMPVDQSKITEGVTHAWYKDN 310
Query: 236 PY--ECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQC----------VNRLLGK 283
P Y K + + + E + R + + K
Sbjct: 311 PNGDHPYDSDTVPDLAKKDAYSFVKAPRYDGKPIEVGPLARMLVMQPQGLMDIIAKYNIK 370
Query: 284 NKVGPVSASDPKIVPPKRADMKRSMESLIHHF-----KLYTEGYHVPV-GEVYAAVEAPK 337
A+ +M + L TE ++ P G+ E P+
Sbjct: 371 PGAVARHAARAFETVILAKEMINWVNQLEAEMGKGLRIHDTEHWNPPATGQGIGLTEVPR 430
Query: 338 GEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLAD------VSA 382
G G ++ ++ P + +E G + D +
Sbjct: 431 GALGHWIKIKDHVT-ENYQMVVPTTWNFSPKDAQGNYGPLEKALIGVPIPDENNPINIVR 489
Query: 383 ILGSLDIVFGEV 394
++ S D
Sbjct: 490 VIRSYDPCLACA 501
>gi|188590480|ref|YP_001920984.1| [Ni/Fe] hydrogenase, large subunit [Clostridium botulinum E3 str.
Alaska E43]
gi|188500761|gb|ACD53897.1| [Ni/Fe] hydrogenase, large subunit [Clostridium botulinum E3 str.
Alaska E43]
Length = 471
Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats.
Identities = 62/451 (13%), Positives = 117/451 (25%), Gaps = 78/451 (17%)
Query: 22 GVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYA 81
G+L++ ++++ + G RG EK+ + + L + R+ + + A
Sbjct: 14 GLLKIEVDVENNKIVDAK-STGSQFRGFEKMFQGRPPLDIIRLAPRICGICSTSHAIAAT 72
Query: 82 LAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA---------------- 125
LA+E L I G++IR + + +HL A
Sbjct: 73 LALENALNITPDFNGKVIRDIAHGFEFLQNHLRTTYFFAFPDFVKITASNPLYKDGTDKE 132
Query: 126 -------------LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVED 172
L + + +G H GG+ I E
Sbjct: 133 LDYRLPTDITKKINEDYLEAIKYSRECHRAIAVLAGKAPHCHGIWVGGISTYIDVPEKEA 192
Query: 173 IGCWCDSFPSALN------------DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGV 220
+ + +D + + + + +
Sbjct: 193 VKYTITVVKEFIENKLLEDVKIIAQYYNDYFNMGKGYGNLMDFGLYSDYKAPIKYTEASA 252
Query: 221 MIRGSGAAWDLRKSQPYECYSELDFD--------------IPIGKHGDCYDRYLVRMMEM 266
MI G D+ YS LD P + +
Sbjct: 253 MINGKKENIDVNNITENVKYSYLDIPGGMVMPGVSSTPEANPYKQDAYSWVDAARYKNYS 312
Query: 267 RESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP- 325
E + RQ +N + K + + L+ + E + +P
Sbjct: 313 MEGGPLARQILNGYYENKISAMDRILARVLESVKICESIIGLIDLMKLGQAVQEEWKIPS 372
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQ 376
AP+G G +L S + + P +L +E G +
Sbjct: 373 KANGIGLTGAPRGALGHWL-SIENKQVSNYTLIPPSAWNLSPTDSNNIKGPVEAALIGTE 431
Query: 377 LAD------VSAILGSLDIVFGEV-----DR 396
+ D + I+ S D DR
Sbjct: 432 INDMKNPVEIGRIVRSFDPCSNCAAHVTSDR 462
>gi|219668769|ref|YP_002459204.1| hydrogen:quinone oxidoreductase [Desulfitobacterium hafniense
DCB-2]
gi|219539029|gb|ACL20768.1| Hydrogen:quinone oxidoreductase [Desulfitobacterium hafniense
DCB-2]
Length = 518
Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats.
Identities = 68/492 (13%), Positives = 124/492 (25%), Gaps = 119/492 (24%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L++ +E+ +V IG ++RG E L+ + A +R V + A
Sbjct: 12 IEGHLKVEVEVTNGVVTDAK-SIGTMYRGFEPLLRGRDPRDATYVTERTCGVCAGSHGWA 70
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILS---HLLNVTTQAMDVG------------ 124
+LA+++ G ++P G+LIR L + H +++
Sbjct: 71 SSLALDQAFGAKVPTGGRLIRNLMIGAMWLHDHPLHFYHLSALDYLDITAVAKYQGQDPG 130
Query: 125 ---------------------------------------ALTPPLWGFEEREKLMVFYER 145
A++ L + K
Sbjct: 131 LLRVKDKISKLIAAGDTAPLTPRYEPDAFCVNDPELVTLAVSHYLHALNMQAKAKKMSAL 190
Query: 146 ASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS--DLLTG---------- 193
+G + H + GGV E+VE L +I D+LT
Sbjct: 191 FAGKQPHQSSIVAGGVTMLPNIEVVEQFRSMLLEQIDYLENIYLQDVLTFGTGPLLPLAQ 250
Query: 194 ------------------NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQ 235
+ K G V + G K
Sbjct: 251 AGVGGGYGNFLAYGGFGLDDEGKDFLFKQGIVLDGNLSNVMPVDQSKITEGVTHAWYKDN 310
Query: 236 PY--ECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQC----------VNRLLGK 283
P Y K + + + E + R + + K
Sbjct: 311 PKGDHPYDSDTVPDLAKKDAYSFVKAPRYDGKPIEVGPLARMLVMQPQGLMDIIAKYNIK 370
Query: 284 NKVGPVSASDPKIVPPKRADMKRSMESLIHHF-----KLYTEGYHVPV-GEVYAAVEAPK 337
A+ +M + L TE ++ P G+ E P+
Sbjct: 371 PGAVARHAARAFETVILAKEMINWVNQLEAEMGKGLRIHDTEHWNPPATGQGIGLTEVPR 430
Query: 338 GEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLAD------VSA 382
G G ++ ++ P + +E G + D +
Sbjct: 431 GALGHWIKIKDHVT-ENYQMVVPTTWNFSPKDAQGNYGPLEKALIGVPIPDENNPINIVR 489
Query: 383 ILGSLDIVFGEV 394
++ S D
Sbjct: 490 VIRSYDPCLACA 501
>gi|57235076|ref|YP_180861.1| [Ni/Fe] hydrogenase, group 1, large subunit, putative
[Dehalococcoides ethenogenes 195]
gi|57225524|gb|AAW40581.1| [Ni/Fe] hydrogenase, group 1, large subunit, putative
[Dehalococcoides ethenogenes 195]
Length = 526
Score = 191 bits (486), Expect = 2e-46, Method: Composition-based stats.
Identities = 71/500 (14%), Positives = 131/500 (26%), Gaps = 127/500 (25%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L++ +DG V+ +G L RG E ++ + AV R+ V P +
Sbjct: 12 IEGHLKIEATVDGGEVKDAKC-VGTLFRGFEIFMKDRDPRDAVHITQRICGVCPTSHGTT 70
Query: 80 YALAVEKLLGI--EIPIRGQLIRVLYSEIGRILS---HLLNVTTQAMDV----------- 123
AL ++ G+ +IP G+++R L I S H ++
Sbjct: 71 AALNLDSAFGVADKIPNNGRILRNLIQGANYIASHIVHFYHLAALDYVDVTEVADYDGTD 130
Query: 124 -----------------------------------------GALTPPLWGFEEREKLMVF 142
A+ + G R
Sbjct: 131 PELLKVKDFIARALAAGDMSMLAPFYPRYEGDYRLPKKVAQAAVAHYVEGLNMRRLAHEM 190
Query: 143 YERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN-----DISDLLTGNRIF 197
SG H+ GGV + + + ++ + ++ D+ + +
Sbjct: 191 SAIYSGRLPHSVAVVAGGVTSHPSIDSISNFMSKLNTLRNFIDNVYIPDVIAVAESYPDY 250
Query: 198 KQRNVNIGTVKLEDAWGWGFSGVMIR----------GSGAAWDLRKSQP--------YEC 239
V G + + SG + S + R P Y
Sbjct: 251 FGIGVGCGNLLSYGVFDLEASGTNLATRQRLFTQGVVSASDLAHRTFDPSKITESIKYSW 310
Query: 240 YSELDFDIP---------IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKN------ 284
+ + P G + + E + R VN + G
Sbjct: 311 FKGDTTEYPLNEVTEPEFTKADGYSWLKAPRYDGTPYEVGPLARMVVNYVSGDPLVQQMV 370
Query: 285 -------KVGPVSASDPKIVPPKRA--------DMKRSMESLIHHFKLYTEGYHVPVGEV 329
GP + RA +M + + L + + E
Sbjct: 371 NDTLSHFGAGPAALFSTLGRHAARALECKIVADEMVKWLMELKIGEPVIADYEIPETAEG 430
Query: 330 YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLAD- 379
EAP+G G ++ +K + P + +E G ++ D
Sbjct: 431 MGLWEAPRGALGHWIKI-ENHKISNYQCVVPTTWNCSPKDNQGVYGPVEQALIGTKVRDN 489
Query: 380 -----VSAILGSLDIVFGEV 394
+ I+ S D
Sbjct: 490 DNPFELVRIVRSFDPCLACA 509
>gi|316931881|ref|YP_004106863.1| nickel-dependent hydrogenase large subunit [Rhodopseudomonas
palustris DX-1]
gi|315599595|gb|ADU42130.1| nickel-dependent hydrogenase large subunit [Rhodopseudomonas
palustris DX-1]
Length = 481
Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats.
Identities = 69/478 (14%), Positives = 121/478 (25%), Gaps = 97/478 (20%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
I GP + G L + L++DG +V + L+RG E+++ ++ + A+ R+
Sbjct: 5 ITVGPFN-RVEGDLEVRLDIDGGVVVSAEVTAP-LYRGFEQILRGRSAMDALTLVPRICG 62
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ ++Q A A A+ G+ G L L HL + M A
Sbjct: 63 ICSVSQSMAAAAALRAAGGVRPARNGVLAANLAHAAENAADHLTHFYLFFMPDFARDAYA 122
Query: 131 W---------------------GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL 169
R +L+ +G H+ F+PGG I
Sbjct: 123 ERPWHPEIAARFKAVQGSAAQAMLPARARLLQIMGLLAGKWPHSLAFQPGGTTCAIDLGE 182
Query: 170 VEDIGCWCDSFPSALNDISD------------------------------LLTGNRIFKQ 199
+ F L L + +
Sbjct: 183 RVQLLSIIGDFRDFLERTVFGDSLDNVLEVDSARALETWRDGRGGDFARFLAVADDLALH 242
Query: 200 RNVNIGTVKLEDAWGWGFS-------------------GVMIRGSGAAWDLRKSQPYECY 240
R I + G A +
Sbjct: 243 RLGRIALPLMSVGAYHGDDVPLFAAGVFDPSSAERAAFDPAAITEDVAHAWMRDTALSPM 302
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL------GKNKVGPVSASDP 294
G + + E + RQ V+ G+ +
Sbjct: 303 EADTVPDADKPAGYSWCKAPRLGGGPAEVGALARQAVDGDPLIRDCLGRFGPCVTTRVIA 362
Query: 295 KIVPPKRAD--MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKP 352
++ R M++ L G G VEA +G G ++ G +
Sbjct: 363 RLRETARLALAMQQWARQLDLAEPFLERGERGRDGSGIGLVEAARGSLGHWIELRGDS-I 421
Query: 353 YRCKIRAPGYAHLQ---------AMEFLCKGHQLAD-------VSAILGSLDIVFGEV 394
R +I AP + +E G + D + ++ S D
Sbjct: 422 RRYQIIAPTSWNFSPRDRGGFPGPLEQALVGTPVGDAGARAVTIQHVVRSFDPCMVCT 479
>gi|167946816|ref|ZP_02533890.1| NADH dehydrogenase (ubiquinone), D subunit [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 270
Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats.
Identities = 127/258 (49%), Positives = 167/258 (64%), Gaps = 27/258 (10%)
Query: 81 ALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLM 140
LA+EKLLG+E+P+R Q IR ++ EI RIL+HL+ + T A+DVGA+T L+ F ERE LM
Sbjct: 1 MLAIEKLLGVEVPLRAQYIRTMFDEITRILNHLMWLGTHALDVGAMTVFLYAFREREDLM 60
Query: 141 VFYERASGSRMHAAYFRPGGVHQDIPPEL-------------------------VEDIGC 175
YE SG+RMHAAY+RPGGV++D+P ++ ++ IG
Sbjct: 61 DCYEPVSGARMHAAYYRPGGVYRDLPDQMPQYQQSQWTTGRDVGRRNEARQGSLLDFIGD 120
Query: 176 WCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQ 235
+ D FP+ +++ LLT NRI+KQR V IG V E A GF+G M+RGSG WDLRK Q
Sbjct: 121 FADRFPALVDEYETLLTDNRIWKQRTVGIGVVSPERALQLGFTGPMLRGSGVEWDLRKKQ 180
Query: 236 PYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPK 295
Y Y ++DFDIP+G GD YDRYLVR+ E+R+S +II+QCV L +N GPV D K
Sbjct: 181 SYAAYDKVDFDIPVGVTGDSYDRYLVRIEELRQSNRIIKQCVEWL--RNNPGPVMVDDHK 238
Query: 296 IVPPKRADMKRSMESLIH 313
I PP R+DMK ME L+
Sbjct: 239 IAPPSRSDMKGDMEGLMP 256
>gi|94265737|ref|ZP_01289474.1| Nickel-dependent hydrogenase, large subunit [delta proteobacterium
MLMS-1]
gi|93453750|gb|EAT04126.1| Nickel-dependent hydrogenase, large subunit [delta proteobacterium
MLMS-1]
Length = 473
Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats.
Identities = 71/437 (16%), Positives = 124/437 (28%), Gaps = 64/437 (14%)
Query: 20 AHGVLRLILELDGEI-VERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G R+ + LD + V HI + RG E E + + R + P++ +
Sbjct: 13 IEGHARISIYLDDDGGVRDCRLHITQV-RGFEAFCEGRPLEEMPGLTSRTCGICPVSHQL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV--------------- 123
A A A ++LL ++IP L+R L + + SH L+ +
Sbjct: 72 ASAKACDQLLAVQIPPAAVLLRKLLNFGQLVQSHALSFFHLSSPDLLLGMDADPENRNIF 131
Query: 124 ----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R ER +G R+H + PGGV + + PE E I
Sbjct: 132 GLAAAFPEVARDGIALRRFGQQLIERLAGKRIHPNWVVPGGVSRPLSPENREAILAELPE 191
Query: 180 FPSALN----DISDLL----------------------TGNRIFKQ----RNVNIGTVKL 209
+ + +LL T NR+ R ++ G L
Sbjct: 192 MLAKAAGTLVRLEELLPGFSAEIAAFTPPSTSFMALAGTANRLEYYDGPLRLLDAGGQAL 251
Query: 210 EDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRES 269
+ G +I + KS Y +G + ++
Sbjct: 252 VENLPPHRYGEIIAEAVEGDSYLKSPYYRPQGPAQGVYRVGPLARLNLVANCGTPQADQA 311
Query: 270 VKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEV 329
+ R+ + + + + K E
Sbjct: 312 LGRFRELTAAKALPQSAFHYHYARLIEIIHGLERIGELLNEPEILGKRVRATAGANAPEG 371
Query: 330 YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH--------LQAMEFLCKGHQLAD-- 379
EAP+G + D K + + LQA L + Q ++
Sbjct: 372 VGICEAPRGTLIHHYGIDEEGKISAVNMIIATGNNNLAINQGLLQAARALIQNGQFSEGA 431
Query: 380 ---VSAILGSLDIVFGE 393
+ A++ D
Sbjct: 432 LNRIEALVRCYDPCLSC 448
>gi|24216976|ref|NP_714457.1| metal (Ni/Fe) hydrogenase large subunit [Leptospira interrogans
serovar Lai str. 56601]
gi|24198375|gb|AAN51475.1| metal (Ni/Fe) hydrogenase large subunit [Leptospira interrogans
serovar Lai str. 56601]
Length = 466
Score = 190 bits (484), Expect = 2e-46, Method: Composition-based stats.
Identities = 73/388 (18%), Positives = 141/388 (36%), Gaps = 34/388 (8%)
Query: 12 NFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYV 71
GP H + GE + +D +G RG LI+ K ++PY + +
Sbjct: 108 AVGPIHAGVIEPGHFRFIVKGEEIRSLDIRLGFQKRGLIDLIKGKGPKDSIPYAEAISGD 167
Query: 72 APMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLW 131
+ ++ A++ E+ I +P R++ E+ R+ +H+ ++ A D+G
Sbjct: 168 STISYAIAFSRIFEEAQNIAVPQELDFARLVLLELERVATHIGDMGAIAGDIGYYPLQGV 227
Query: 132 GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDI--PPELVEDIGCWCDSFPSALNDISD 189
+R + E +G+R PG + ++++ S + +
Sbjct: 228 CSLQRGIPLGVMEALTGNRFGRGALSPGKIFFRKGLDRNKLKELSERIRSVTEEVVGHFE 287
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQP-YECYSELDFD-I 247
G ++R + G ++ + GF G++ + +G DLR + Y S + +
Sbjct: 288 RAAGRSTNRERLQSCGVIRQKQVRHLGFIGMVEKCTGLNRDLRNLEKSYAFSSPISLELN 347
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
GD + R+ +R E++ S K + + + +L
Sbjct: 348 RDQMRGDAWARFYLRYEELKNSSKWLVEAIPKLEA------------------------- 382
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
+L F V G Y+AVE +G V L D IR + A
Sbjct: 383 --ALDLKFGKSNP---VKKGTYYSAVEGWRGPVLVSLDLDSNGTIENAYIREVSVPNWHA 437
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVD 395
+E +G + D S ++ + VD
Sbjct: 438 LELAVRGEYIGDFPLNNKSFNLSYVGVD 465
>gi|296137507|ref|YP_003644749.1| nickel-dependent hydrogenase large subunit [Thiomonas intermedia
K12]
gi|295797629|gb|ADG32419.1| nickel-dependent hydrogenase large subunit [Thiomonas intermedia
K12]
Length = 479
Score = 190 bits (484), Expect = 2e-46, Method: Composition-based stats.
Identities = 71/475 (14%), Positives = 126/475 (26%), Gaps = 96/475 (20%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
FGP + G L + +E+ G V L+RG E+++ K A+ Y R+ +
Sbjct: 6 FGPFN-RVEGDLEVQVEIAGGAV-SAAWVNSPLYRGFEQILHGKDPRDALVYTPRICGIC 63
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP--- 129
++Q A A A+ +G+ G L L + HL + M A
Sbjct: 64 SVSQSMAAAAALRAAMGVTEADNGALAANLVLACENLCDHLTHFYLFFMPDFARADYADR 123
Query: 130 ------------------LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
R + +G H+ +PGG + I P+
Sbjct: 124 PDFPAATARFKAQTGTASRDMLSARAAFLHLTGILAGKWPHSLALQPGGTSRAIEPQEKS 183
Query: 172 DIGCWCDSFPSALN--------DISDLLTGNRIFKQRNVNI------------------- 204
+ F L + L
Sbjct: 184 QLRTIVALFRRFLETTLFADRLEQVSALDSAAALYAWGQAHPQGDFAHFLRLSDALGLDR 243
Query: 205 -----------------GTVKLEDAWGWGFSGVMIRGSG-----AAWDLRKSQPYECYSE 242
G+ G S + S +W ++ P
Sbjct: 244 LGRGSGRFLSYGAYALHGSHLFAPGIWDGASKPLDANSITEDISHSWLHGQTGPMHPLHG 303
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN-----RLLGKNKVGPVSASDPKIV 297
+ + + E+ + RQ V+ R L N + +++
Sbjct: 304 CTHTSLDNPDAYTWCKAPRLNGAVMETGALARQVVDGHPLARDLASNGGNVQARVVARLL 363
Query: 298 PPKRA--DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRC 355
R M++ + +L + VEA +G G +L +
Sbjct: 364 ELARVLPAMEQWIAALQPGAPFCNTAEVPDEADGTGLVEAARGSLGHWLRIR-KGRILNY 422
Query: 356 KIRAPGYAHLQ---------AMEFLCKGHQL-ADVS------AILGSLDIVFGEV 394
+I AP + A+E G + AD ++ S D
Sbjct: 423 QIIAPTTWNFSPRDAAGTPGALEQALVGTPVSADAVSSAAIQHVVRSFDPCMVCT 477
>gi|226306891|ref|YP_002766851.1| NiFe hydrogenase alpha subunit [Rhodococcus erythropolis PR4]
gi|226186008|dbj|BAH34112.1| putative NiFe hydrogenase alpha subunit [Rhodococcus erythropolis
PR4]
Length = 434
Score = 190 bits (484), Expect = 2e-46, Method: Composition-based stats.
Identities = 55/421 (13%), Positives = 110/421 (26%), Gaps = 30/421 (7%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+ + + + G G RL + VE + +I R E + + F +
Sbjct: 4 ETNTDTTRLTLGSL-ARVEGEGRLAFTVRHGRVEAAELNIYEPPRFFESFLRGRDFREPP 62
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
R+ + P+ + + A+E+ G + +R L I SH L++
Sbjct: 63 DITSRICGICPVAYQVSACNAIEQACGAHLTQPILDLRRLLYCGEWIASHTLHIYLLHAP 122
Query: 123 VG------------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELV 170
A G ++ + G +H R GG ++ P +
Sbjct: 123 DFLGASDAIELARIARPDVERGLTLKKAGNAILDMIGGRSIHPVNVRLGGFYRTPTPSEL 182
Query: 171 EDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWD 230
+ ++ I + GV+ SG+++
Sbjct: 183 APLAEQLRWALDDALATVQWVSHFEIPDAEVDTELLALAQPGRYAIEDGVLTTTSGSSFA 242
Query: 231 LRKSQPYECYSELDFDIPIGKHGDCYDRYLVRM-MEMRESVKIIRQCVNRLLGKNKVGPV 289
+ + ++ + H D + S +
Sbjct: 243 PEEFCDHVAERQVPHSTALHAHLDGQAYLTGPLARYSLHSADLSETARQAATEAGLGTVC 302
Query: 290 SASDPKIVPPKRADMKRSMESLIHHFKLYTEG-----YHVPVGEVYAAVEAPKGEFGVYL 344
IV + E+L + Y Y EAP+G
Sbjct: 303 RNPFQSIVVRAVETVFAVDEALRLIREYYRPESPYVDMSPRAATGYGVSEAPRGVLYHLY 362
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADV-----------SAILGSLDIVFGE 393
D + R I P + A+E + A++ + + D
Sbjct: 363 QLDSEGRILRATIIPPTSQNQAAIENDLRNTLAANLTLTDAELTELCERTIRNYDPCISC 422
Query: 394 V 394
Sbjct: 423 A 423
>gi|192289563|ref|YP_001990168.1| nickel-dependent hydrogenase large subunit [Rhodopseudomonas
palustris TIE-1]
gi|192283312|gb|ACE99692.1| nickel-dependent hydrogenase large subunit [Rhodopseudomonas
palustris TIE-1]
Length = 481
Score = 190 bits (484), Expect = 3e-46, Method: Composition-based stats.
Identities = 68/478 (14%), Positives = 117/478 (24%), Gaps = 97/478 (20%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
I GP + G L + L+LD +V + L+RG E+++ ++ + A+ R+
Sbjct: 5 ITVGPFN-RVEGDLEVRLDLDDGVVRSAEVTAP-LYRGFEQILRGRSAMDALTLVPRICG 62
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP- 129
+ ++Q A A+ G+ G L L HL + M A
Sbjct: 63 ICSVSQSMAAVAALRAAGGVRPARNGVLAANLAHAAENAADHLTHFYLFFMPDFARDAYA 122
Query: 130 --------------------LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL 169
R +L+ +G H+ F+PGG I
Sbjct: 123 GRPWHPEIAARFKAVQGSAAQAMLPARARLLQIMGLLAGKWPHSLAFQPGGTTCAIDLGE 182
Query: 170 VEDIGCWCDSFPSALNDISD------------------------------LLTGNRIFKQ 199
+ F L L + +
Sbjct: 183 RVQLLSIIGDFRDFLERTMFGDSLDNVLAIDSVAALEAWRDGRGGDFARFLAVADDLALH 242
Query: 200 RNVNIGTVKLEDAWGWGFS-------------------GVMIRGSGAAWDLRKSQPYECY 240
R I + G A +
Sbjct: 243 RLGRIALPLMSFGAYHGEDAPLFAAGVLDPLSAARTSFDPAAITEDVARAWMRDTSLSPL 302
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL--GKNKVGPVSASDPKIVP 298
G + + E + RQ ++ S ++V
Sbjct: 303 EADTDPDADKPAGYSWCKAPRLAGGPAEVGALARQAIDGDPLIRDCVARFGSCVTTRVVA 362
Query: 299 PKRA------DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKP 352
R M + L G G VEA +G G ++ G +
Sbjct: 363 RLRETARLALAMHQWARQLDLAEPFLERGERGRDGTGIGLVEAARGSLGHWIELRGDS-I 421
Query: 353 YRCKIRAPGYAHLQ---------AMEFLCKGHQLAD-------VSAILGSLDIVFGEV 394
R +I AP + +E G + D + ++ S D
Sbjct: 422 RRYQIIAPTSWNFSPRDRGGVPGPLEQALVGTPVGDAGARAVTIQHVVRSFDPCMVCT 479
>gi|187779565|ref|ZP_02996038.1| hypothetical protein CLOSPO_03161 [Clostridium sporogenes ATCC
15579]
gi|187773190|gb|EDU36992.1| hypothetical protein CLOSPO_03161 [Clostridium sporogenes ATCC
15579]
Length = 471
Score = 190 bits (484), Expect = 3e-46, Method: Composition-based stats.
Identities = 59/442 (13%), Positives = 112/442 (25%), Gaps = 71/442 (16%)
Query: 22 GVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYA 81
G L + ++++ I+ + GLL RG EK++E + L A+ + +R+ +
Sbjct: 15 GFLEIKVKVEDNIIVDGE-TSGLLFRGFEKMLEGRPPLDAIYFTERICGICSTAHAMTST 73
Query: 82 LAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL--------------- 126
LA+E L I I IR + I +HL +
Sbjct: 74 LALENALNITPSINDLYIRDMMHGFEFIQNHLRQFYCFTIPSYVNLPNIKPIYPQEYSDF 133
Query: 127 -----------TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGC 175
+ G + G H GGV +I + I
Sbjct: 134 RLPKKLNERISSHYEEGIKYSRLAHEALAVLGGKAPHTHGIFVGGVTVNIDSYKLTKIQS 193
Query: 176 WCDSFPS-----ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS--------GVMI 222
+ L D++ + + G + GV+I
Sbjct: 194 ILKAIKEFVNTYMLEDMNIIAKYYSDYFNLGKTYGNFMSFGVFDNYEDKNISYVKPGVII 253
Query: 223 RGSGAAWDLRKSQPYECYSELDFDIPIGKH--------------GDCYDRYLVRMMEMRE 268
+D K Y+ D + + E
Sbjct: 254 NNKSENFDRNKITENIRYAWYVSDTITENPIMDNEYTVDLKKEGAYSFVKAPRYDGLPME 313
Query: 269 SVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV-G 327
+ R + + K D+ ++ I Y++P
Sbjct: 314 VGPLARLKIAGEYTGGNSSMDRNIARVLETKKIIDILSNISEKIQLIPNNQSVYNIPDNA 373
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA---------MEFLCKGHQLA 378
++ +G ++ I P ++ E G ++
Sbjct: 374 FGEGLIDTTRGSLSHFIKI-ENKIIKYYNIITPTAWNISPKDSNGTRGVGEKSLIGSKIN 432
Query: 379 DVS------AILGSLDIVFGEV 394
+V I+ S D
Sbjct: 433 NVEKPVEIGRIIRSFDPCISCA 454
>gi|34329629|gb|AAQ63963.1| HoxH [Arthrospira platensis FACHB440]
Length = 448
Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats.
Identities = 68/441 (15%), Positives = 120/441 (27%), Gaps = 74/441 (16%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD VE H+ + RG EK E + F + R+ + P++
Sbjct: 6 IEGHAKISIFLDDAGEVENARFHV-VEFRGFEKFCEGRPFPEMAGITARICGICPVSHLL 64
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A A +K+L ++IP G+ +R + + I SH L+ +
Sbjct: 65 ASAKTGDKILAVKIPPAGEKLRRMMNLAQIIQSHSLSFFHLSSPDFLLGWDSDPAKRNVF 124
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ E R+H A+ PGGV + E I
Sbjct: 125 GLIAADPDLARGGIRLRQFGQKIIELLGAKRIHPAWAVPGGVRFPLNEEGRTWIRERLPE 184
Query: 180 FPSALNDISDLLTG-NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA----------- 227
+ L F G G G
Sbjct: 185 SRQTIETALTLFKQLLDRFTTEVEAFGKFPSLFMGLVTKKGDWEHYDGHIRFVDSEGKIV 244
Query: 228 ------------------AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRES 269
AW K Y+ D +G + + +
Sbjct: 245 ADHLSEDDYQDYLGEAVEAWSYLKFPYYKPLGYPDGIYRVGPLARLNICSKIGVPAADKE 304
Query: 270 VKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVG-- 327
++ RQ G +++ +E L++ + + G
Sbjct: 305 LEEFRQR----AGGIATSSFYYHYARLIEILAGV--EFIEQLVNDPDIVSPRVRSDAGIN 358
Query: 328 --EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFL--------CKGHQL 377
E EAP+G + D + + + AM G+++
Sbjct: 359 QLEGIGVSEAPRGTLFHHYNVDDNGIIKKVNLIIATGQNNLAMNKTVTQIAQHYIHGNEI 418
Query: 378 AD-----VSAILGSLDIVFGE 393
A+ V A + + D
Sbjct: 419 AEGLLNRVEAGIRAFDPCLSC 439
>gi|170289946|ref|YP_001736762.1| coenzyme F420-reducing hydrogenase, alpha subunit [Candidatus
Korarchaeum cryptofilum OPF8]
gi|170174026|gb|ACB07079.1| Coenzyme F420-reducing hydrogenase, alpha subunit [Candidatus
Korarchaeum cryptofilum OPF8]
Length = 427
Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats.
Identities = 60/407 (14%), Positives = 133/407 (32%), Gaps = 33/407 (8%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G + + ++G+ V+R I R E+++ K++ + R+ + P + A
Sbjct: 12 VEGHGDIEVVVEGDAVKRAVLRIYEGPRFFERILIGKSYYEVPDITARICSICPDPYQVA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG------------ALT 127
+ A+EK +GI + + + +R L I SH L++ A+
Sbjct: 72 SSRAIEKAMGIRVDRQVEALRELQLISDVIHSHALHLFFLALPDFLGYKDAIGMAAQYPE 131
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
+ + E +G +H +PGG + E +E + +S +
Sbjct: 132 TVKLALKVKRAGNAIKEVITGRTVHGVVTKPGGYTKVPRAEDLERLRKQLESSIDGAREA 191
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG-VMIRGSGAAWDLRKSQP--------YE 238
+ + ++ + + + ++ +G+SG ++ G + K +
Sbjct: 192 IRVFSSLKMPEYSLDDNLYIAVDPGEHYGYSGEYLLVSDGTRHPVEKYMDLTNEVTVEHS 251
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
+ G L E+ + +++ +N A +++
Sbjct: 252 SAKHSSYKGSSFMTGALARLLLNEKRLYGEAKESYESLRDKIDPRNPFSNNMAQAIELLY 311
Query: 299 PKRADMKRSMESLIHHFK-LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKI 357
+ M L K GE A VEAP+G + D K +
Sbjct: 312 SVQRAMDIIDGLLDEGIKDKLMVEVKPRAGEGIAVVEAPRGLLYHHYKLDDNGKVVFANL 371
Query: 358 RAPGYAHLQAMEF----LCKGHQ-LAD------VSAILGSLDIVFGE 393
P + M+ + + L+D + ++ + D
Sbjct: 372 VTPTAQNAANMDKYLRIAVRNLKDLSDDELKLKLEMLVRAYDPCISC 418
>gi|117928227|ref|YP_872778.1| nickel-dependent hydrogenase, large subunit [Acidothermus
cellulolyticus 11B]
gi|117648690|gb|ABK52792.1| nickel-dependent hydrogenase, large subunit [Acidothermus
cellulolyticus 11B]
Length = 431
Score = 190 bits (483), Expect = 4e-46, Method: Composition-based stats.
Identities = 63/413 (15%), Positives = 117/413 (28%), Gaps = 46/413 (11%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L +E DG++V +V+ I R E L+ ++ +A R+ + P+ + +
Sbjct: 16 VEGEGALFVECDGDVVTKVELRIFEPPRFFEALLRGRSCFEAPDITARICGICPVAYQTS 75
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG------------ALT 127
AVE L G+++P +R L I SH L+V
Sbjct: 76 AVNAVESLAGVDVPESIHHLRRLLYCGEWIESHALHVYLLHAPDFLGYPDAITLARDYPD 135
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
G + + G +H R GG ++ + + + +
Sbjct: 136 IVQRGLQLKAAGNHLMRVLGGREIHPINVRVGGFYRVPSASELRALRPELEQAREIAVET 195
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
++G ++ + G + +G D + Y ++
Sbjct: 196 VRWVSGFSFPERVFEGALVALHQPDSYAIERGRIRSDTGLDIDASRYDDYFEEEQVGHST 255
Query: 248 PIGKHGDCYDRYLV-----RMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+ RYL + R+ + ++C V IV
Sbjct: 256 ALHSRLRGAGRYLCGPLARYSLNYRQLSPLAKECAREAGLGEVCRDV---FRSIVVRSVE 312
Query: 303 DMKRSMESLIHHFKLYTE-----GYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKI 357
+ E+L V G + EAP+G DG +I
Sbjct: 313 LVYACDEALRLIDIYERPEIPAVPVVVRPGTGHGVSEAPRGLLYHRYRLDGDGTILDAEI 372
Query: 358 RAPGYAHLQAMEFLCKGHQLADVSA----------------ILGSLDIVFGEV 394
P + A+E + DV + + D
Sbjct: 373 VPPTAQNQAAIE-----GDVHDVVVRYRDLDDEQLRHLCEQAIRNYDPCISCA 420
>gi|53802627|ref|YP_112653.1| NAD-reducing hydrogenase subunit beta [Methylococcus capsulatus
str. Bath]
gi|53756388|gb|AAU90679.1| NAD-reducing hydrogenase, beta subunit [Methylococcus capsulatus
str. Bath]
Length = 494
Score = 189 bits (481), Expect = 5e-46, Method: Composition-based stats.
Identities = 67/443 (15%), Positives = 142/443 (32%), Gaps = 75/443 (16%)
Query: 20 AHGVLRLILELDGEI-VERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ L LD + V + HI + RG E+ I+ + + + RL + P++
Sbjct: 25 VEGHGKVTLLLDDDDHVRQARLHI-VEFRGFERFIQGRPYWELPVLVQRLCGICPVSHHL 83
Query: 79 AYALAVEKLLGIE-IPIRGQLIRVLYSEIGRILSHLLNVTTQ---AMDVGALTPPLW--- 131
A A A+++++G++ + + +R L + SH L+ + +G +P
Sbjct: 84 AAAKAIDQIVGVDRLTPAAEKLRRLMHFGQFLQSHALHFFHLATPDLLLGFDSPAGRRNI 143
Query: 132 -------------GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
G R+ SG R+H + PGG+++ + E + + D
Sbjct: 144 FEVLKEYPDVGLEGVRMRKYGQEVIRVISGKRIHGSASIPGGMNKALTCEERDFLRQDID 203
Query: 179 SFPSALND----ISDLLTGNRIFKQRNVNI---------------------------GTV 207
+ I + NR +R I G
Sbjct: 204 EVLGWCRNALALIRRIYLANREHHERFGLIRSNFMGLIRDDGAFEIYHGGLRAKDASGRT 263
Query: 208 KLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMR 267
+ G++G ++R +W K E + + +G + +
Sbjct: 264 IFDKLDYRGYTG-ILREEVRSWSYMKFPYIEALGKENGWYRVGPLARINNCDFIPTPLAE 322
Query: 268 ESVKIIRQCVNRLLGKNKVGPVSASDPKIVP--PKRADMKRSMESLIHHF-KLYTEGYHV 324
E+ + + G G ++ +++ ++ ++ L G
Sbjct: 323 EA---RQDFLAHGAGGPVHGSLAFHWARMIETLHCAESIRELLDDPELLGTDLVVHGERR 379
Query: 325 PVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK--------GHQ 376
P E +EAP+G + D + R + + QAM + G
Sbjct: 380 P--EGIGVIEAPRGTLFHHYQVDENDLVTRANLIVSTTQNNQAMNESIRQVAAEYLDGQT 437
Query: 377 LAD-----VSAILGSLDIVFGEV 394
+ + + + + D
Sbjct: 438 ITEGLLNHIEVAIRAYDPCLSCA 460
>gi|288817815|ref|YP_003432162.1| nickel-dependent hydrogenase large subunit [Hydrogenobacter
thermophilus TK-6]
gi|288787214|dbj|BAI68961.1| nickel-dependent hydrogenase large subunit [Hydrogenobacter
thermophilus TK-6]
gi|308751413|gb|ADO44896.1| nickel-dependent hydrogenase large subunit [Hydrogenobacter
thermophilus TK-6]
Length = 421
Score = 189 bits (481), Expect = 6e-46, Method: Composition-based stats.
Identities = 68/404 (16%), Positives = 122/404 (30%), Gaps = 31/404 (7%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + LD + ++ + I R E+++ K + R+ + P+ + +
Sbjct: 11 VEGEGALDIVLDKDQIKDLKLRIYEPPRYFEEILRGKPYHFIPDVTARICGICPVAYQMS 70
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA------------LT 127
AVE GIE+P L+R L I SH +++ +
Sbjct: 71 GVQAVEDAFGIEVPEDILLLRRLMYYGEWIQSHAIHIFFLHLPDFYGVSSIAQLAKVDRE 130
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
G RE + G H GG PE + +
Sbjct: 131 LVQGGLRLREVGSKIIQMLGGRTSHPVSVTVGG--FHSLPEHPSVSCKDIEEAIDICYRL 188
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ L + NI V L D SG ++ G + ++ + Y + +
Sbjct: 189 LEKLKHLKFPHFELKNILFVSLTDEDYPILSGDILTSEGEVINKKEFKEYFVEYAVHYST 248
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVN-RLLGKNKVGPVSASDPKIVPPKRADMKR 306
Y+V + + + K + + K + + ++
Sbjct: 249 AKHARTKGGSIYVVGPLARFNNNYQKLSPLATEYAHKLPIKFPELNPYKSILIRMVEILH 308
Query: 307 SMESLIHHFKLYTEG------YHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
S+E + Y + Y V GE + EAP+G D + I P
Sbjct: 309 SLERSHQIIRDYKKPEVIKVSYQVKAGEGFGVSEAPRGILWHSYQFDQQGNILKADIVPP 368
Query: 361 GYAHLQAMEFLCKG--HQL--------ADVSAILGSLDIVFGEV 394
+ AME K +QL + ++ S D
Sbjct: 369 TSQNQDAMEHSLKERCNQLKKEESIIREEAEKLIRSFDPCISCA 412
>gi|146338749|ref|YP_001203797.1| uptake hydrogenase accessory protein HupV [Bradyrhizobium sp.
ORS278]
gi|146191555|emb|CAL75560.1| uptake hydrogenase accessory protein HupV [Bradyrhizobium sp.
ORS278]
Length = 479
Score = 189 bits (481), Expect = 6e-46, Method: Composition-based stats.
Identities = 66/477 (13%), Positives = 133/477 (27%), Gaps = 96/477 (20%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
I GP + G L + L+++ V R + L+RG E+++E + L A+ R+
Sbjct: 4 ITVGPFN-RVEGDLEVRLDIESGRVARAEVTAP-LYRGFEQILEGRPPLDALVIAPRICG 61
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP- 129
+ ++Q A A A+ + +G+ + G L + HL + M A
Sbjct: 62 ICSVSQSIAAAAALRQAMGVVVAPNGVLATNIAHAAENAADHLTHFYIFFMPDFAREAYA 121
Query: 130 --------------------LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL 169
R +L+ +G H+ F+PGG + I
Sbjct: 122 SHSWHGAAAERFTATKGSAAREALPARARLLEIMGVIAGKWPHSLAFQPGGTTRAIELGE 181
Query: 170 VEDIGCWCDSFPSALNDISD-------LLTGNRIFKQRNVN--------IGTVKLEDAWG 214
+ SF L + L R + +
Sbjct: 182 RVRLNAIVASFRGFLERVVFADKLEHVLALSTPDELDRWRDGRSGDFAQFLRIADALDLA 241
Query: 215 WGFSGVMIRGS---------------------------------GAAWDLRKSQPYECYS 241
+ +G + S + + +
Sbjct: 242 YLGAGPGLLMSFGAYRDADGARFRAGLRTPDGKIEALPSGQITEDVSHAWMRETSRDPAE 301
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR------LLGKNKVGPVSASDPK 295
+ + E E + RQ V+ LL ++ + +
Sbjct: 302 SRTEPDADKPDAYSWCKAPRLAGEPVEVGALARQAVHGQQLITALLSESGSNVRNRVIAR 361
Query: 296 IVPPKRAD--MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPY 353
++ ++ +++L + G VEA +G G +L +
Sbjct: 362 LIETAELAVSIEAWIKALRLNEPFCETSREAADGNYVGLVEAARGSLGHWLAVR-SGRIA 420
Query: 354 RCKIRAPGYAHLQ---------AMEFLCKGHQLAD-------VSAILGSLDIVFGEV 394
R +I AP + +E G ++ + + ++ S D
Sbjct: 421 RYQIIAPTSWNFSPRDARGVAGPLEQALVGTEVGEAGARAVSIQHVVRSFDPCMVCT 477
>gi|116624100|ref|YP_826256.1| nickel-dependent hydrogenase large subunit [Candidatus Solibacter
usitatus Ellin6076]
gi|116227262|gb|ABJ85971.1| nickel-dependent hydrogenase, large subunit [Candidatus Solibacter
usitatus Ellin6076]
Length = 474
Score = 189 bits (481), Expect = 6e-46, Method: Composition-based stats.
Identities = 67/440 (15%), Positives = 121/440 (27%), Gaps = 73/440 (16%)
Query: 20 AHGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD E VE H+ RG EK E + + + R+ + P++
Sbjct: 14 IEGHSKITIHLDEEGHVEEAYFHV-TQFRGFEKFCEGRPYYELPSLMARICGICPVSHLI 72
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV--------------- 123
A A A + +L + IP +R + + + SH L+ +
Sbjct: 73 ASAKACDAILAVRIPDAAIRLRRVLNLAQILQSHALSFFYLSSPDLLLGMDADPADRNIF 132
Query: 124 ----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ E +G R+H A+ PGGV + E + I
Sbjct: 133 GVLRANPAVAKDGIRLRQFGQQVIEWLAGKRIHPAWVVPGGVSNPLTAENRDRILAGIPE 192
Query: 180 FPSALNDISDLL-TGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSG------------ 226
+ D + F++ + G G + +G
Sbjct: 193 VMAIATRTLDWFKSELEGFREEIRSFANFPTLFMGLVGEDGGLEHYNGKLRLVDAGGHIV 252
Query: 227 ----------------AAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESV 270
W K+ Y+ D +G + +
Sbjct: 253 ADLPATRFPEYLAEIAHPWTYLKTSFYKPLGYPDGVYRVGPLARLNVIDGIGTPRASQEW 312
Query: 271 KIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFK----LYTEGYHVPV 326
R+ L + +++ A +E L+ H V
Sbjct: 313 AEFRE----LDRGPVLSSFYFHYARLIELLYAV--EKIEMLLTHADALDSNVRAHASVNN 366
Query: 327 GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME--------FLCKGHQLA 378
E EAP+G + D + + AM G++L
Sbjct: 367 SEGIGVSEAPRGTLMHHYKVDRDGLITWANLIIATGHNNAAMNRGVLQVARHFVHGNKLT 426
Query: 379 D-----VSAILGSLDIVFGE 393
V A++ + D
Sbjct: 427 QGMLNRVEAVIRTFDPCLSC 446
>gi|89094329|ref|ZP_01167270.1| Nickel-dependent hydrogenase, large subunit [Oceanospirillum sp.
MED92]
gi|89081388|gb|EAR60619.1| Nickel-dependent hydrogenase, large subunit [Oceanospirillum sp.
MED92]
Length = 500
Score = 189 bits (481), Expect = 6e-46, Method: Composition-based stats.
Identities = 58/476 (12%), Positives = 119/476 (25%), Gaps = 103/476 (21%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + LE+ IV IG ++RG E+++ + + A+ R+ + +A
Sbjct: 12 VEGDLEIELEIKNGIVTDARC-IGTMYRGFEQILIGRAPMDALAITPRICGICSTAHLYA 70
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA------------------- 120
LA+E + I P +R + I S
Sbjct: 71 SVLALESVSNIIPPANAIRVRNICLLSEEIQSDCRQTFLMFTPDLCHSSYSTLNDYQSIV 130
Query: 121 --MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
++ G H++Y PGGV V +
Sbjct: 131 AKFQDMQGELYQDAIRFSRDIIEIVAIFGGQWPHSSYMVPGGVTSLPDRRKVINSLAQLQ 190
Query: 179 SFPSALND------ISDL---------------------LTGNRIFKQRNVNIGTVKLED 211
+ ++D + ++G+ +
Sbjct: 191 RYTQWFEHKILGTSLADWSRITSLAELNNFTQSSDSAIAILHRFCRDMGLDSVGSGSEKM 250
Query: 212 AWGWGFSGV-----MIRGSG------------------------AAWDLRKSQPYECYSE 242
IR G D ++ +
Sbjct: 251 ISYGSLIDPENPQERIRSDGTYNYKLKKHAPLDESKITEDITSSWYHDESQTARHPMQGL 310
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR------LLGKNKVGPVSASDPKI 296
+ + ++ ++ + + V + +L +N + +I
Sbjct: 311 TQPKYDPDSEKYSWAKAPRYDKDVIQTGPLAQLAVAKDPLILDMLAQNGSSTWTRQFARI 370
Query: 297 VPPK--RADMKRSMESLIHHFKLYTEGYHV-PVGEVYAAVEAPKGEFGVYLISDGGNKPY 353
+K + SL+ T + GE +EA +G G +L K
Sbjct: 371 HRQASSLIILKDQLSSLLECLDAPTMIHCPLEDGEGVGMIEAARGSLGHWLKI-EDGKIK 429
Query: 354 RCKIRAPGYAHLQA---------MEFLCKGHQLAD------VSAILGSLDIVFGEV 394
++ P + +E G + D + ++ S D
Sbjct: 430 NFQVITPTAWNASPRDINQQPGHIEQSLIGLPMPDLDEPIEIGHVVRSHDPCLVCT 485
>gi|254168220|ref|ZP_04875066.1| Nickel-dependent hydrogenase superfamily [Aciduliprofundum boonei
T469]
gi|197622729|gb|EDY35298.1| Nickel-dependent hydrogenase superfamily [Aciduliprofundum boonei
T469]
Length = 421
Score = 189 bits (481), Expect = 6e-46, Method: Composition-based stats.
Identities = 69/404 (17%), Positives = 125/404 (30%), Gaps = 34/404 (8%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLH---RGTEKLIETKTFLQAVPYFDRLDYVAPMNQ 76
G L +E++ E ++RV I +H R E + K++ R+ + +
Sbjct: 14 IEGHANLTIEIEDENLKRV---IFGVHEGSRYFEAFMVGKSYKYLPELAGRICGICTVAH 70
Query: 77 EHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG------------ 124
E A AVE LGIEI + +R L I SH+L++ A+
Sbjct: 71 EIASVRAVEDALGIEISEEVEDLRKLMLISSHIQSHILHLYFLALPDYRNVESIIELANK 130
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
+ FE +E E G + PG V + I E +E L
Sbjct: 131 NVNLVKKAFELKEASNYMTELIGGRAVQPCTIVPGKVSKRIGKETIERYIKKMKEIYPFL 190
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA--AWDLRKSQPYECYSE 242
D ++L K + + + G + S ++
Sbjct: 191 LDTAELFLSLEYPKYERESEYVALWDGHSIPLYKGEIATLSSIFDPHQYQEHIREWVVEY 250
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+ + D L R+ R + R+ R + ++ +
Sbjct: 251 SSAKHSLIEGRDYMVGALARLNINRNLREEARELAERYGVRFPSNRIAWINLAQALENVH 310
Query: 303 DMKRSMESLIHHFKLYTEGYHVP--VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ME + + ++P GE +EAP+G + K I P
Sbjct: 311 FALEAMEIAENLKEYDPHKINIPRVSGEGVGVIEAPRGLLIHHYKIK-NGKCTYVNIITP 369
Query: 361 GYAHLQAMEFLCKGHQL-----------ADVSAILGSLDIVFGE 393
+ + +E + KG+ + I+ + D
Sbjct: 370 TAMNTENIERILKGYISQIVSKNDEYIKMEAEKIIRAYDPCISC 413
>gi|270307563|ref|YP_003329621.1| Ni/Fe hydrogenase, large subunit [Dehalococcoides sp. VS]
gi|270153455|gb|ACZ61293.1| Ni/Fe hydrogenase, large subunit [Dehalococcoides sp. VS]
Length = 526
Score = 189 bits (480), Expect = 7e-46, Method: Composition-based stats.
Identities = 71/500 (14%), Positives = 130/500 (26%), Gaps = 127/500 (25%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L++ +DG V+ +G L RG E ++ + AV R+ V P +
Sbjct: 12 IEGHLKIEATVDGGEVKDAKC-VGTLFRGFEIFMKDRDPRDAVHITQRICGVCPTSHGTT 70
Query: 80 YALAVEKLLGI--EIPIRGQLIRVLYSEIGRILS---HLLNVTTQAMDV----------- 123
AL ++ G+ +IP G+++R L I S H ++
Sbjct: 71 AALNLDSAFGVADKIPNNGRILRNLIQGANYIASHIVHFYHLAALDFVDVTEVADYDGTD 130
Query: 124 -----------------------------------------GALTPPLWGFEEREKLMVF 142
A+ + R
Sbjct: 131 PELLKVKDFIARALAAGDMSMLAPFYPRYEGDYRLPKKVAQAAVAHYVEALNMRRLAHEL 190
Query: 143 YERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN-----DISDLLTGNRIF 197
SG H+ GGV + + + ++ ++ D+ + +
Sbjct: 191 SAIYSGRMPHSVAVVAGGVTSHPSIDSISNFMSKLNTLRHFIDNVYLPDVIAVAETYPDY 250
Query: 198 KQRNVNIGTVKLEDAWGWGFSGVMIR----------GSGAAWDLRKSQP--------YEC 239
V G + + +G + S + LR P Y
Sbjct: 251 FGIGVGCGNLLSYGVFDLEANGTNLATRQRLFTQGVVSASDLKLRTFDPNKITESIKYSW 310
Query: 240 YSELDFDIP---------IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKN------ 284
+S + P G + + E + R VN + G
Sbjct: 311 FSGETNEYPLNEVTEPEFTKPDGYSWLKAPRYENTPYEVGPLARMVVNYVAGDPVVQKMV 370
Query: 285 -------KVGPVSASDPKIVPPKRA--------DMKRSMESLIHHFKLYTEGYHVPVGEV 329
GP + RA +M + L + + E
Sbjct: 371 NNTLAHFGAGPAALFSTLGRHAARALECKIVADEMVKWAMELKIGEPVCADYEIPESAEG 430
Query: 330 YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLAD- 379
EAP+G G ++ +K + P + +E G ++ D
Sbjct: 431 MGLWEAPRGALGHWIKI-ENHKISNYQCVVPSTWNCSPKDNQGVYGPVEQALVGTKVRDN 489
Query: 380 -----VSAILGSLDIVFGEV 394
+ I+ S D
Sbjct: 490 DNPFELVRIVRSFDPCLACA 509
>gi|158422220|ref|YP_001523512.1| HupV protein [Azorhizobium caulinodans ORS 571]
gi|158329109|dbj|BAF86594.1| HupV protein [Azorhizobium caulinodans ORS 571]
Length = 490
Score = 189 bits (480), Expect = 7e-46, Method: Composition-based stats.
Identities = 72/477 (15%), Positives = 134/477 (28%), Gaps = 98/477 (20%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
GP + G L + LE+ V R L RG E+++E + A+ R+ +
Sbjct: 15 VGPFN-RVEGDLEVRLEVADGAV-RAAFVSSPLFRGFERILEGRDPFDALVIAPRICGIC 72
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP--- 129
++Q A ALA+ + G+ G++ L + HL + M A
Sbjct: 73 SVSQSQAAALALAQWQGLAPTANGRIATNLLVAAENVADHLTHFHLFFMPDFARAAYADR 132
Query: 130 ------------------LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
E R LM +G H +PGGV + P
Sbjct: 133 PWFAAAEARFKAGRGTSARRLIEARATLMHVLGLLAGRWPHTLAIQPGGVTRRAEPRDQM 192
Query: 172 DIGCWCDSFPSALN------------------DISDL--------------------LTG 193
+ + + L ++ LT
Sbjct: 193 RLLATLGAVRATLEQTLYGAPLERISALADPRELEAWRALGPDGDFRLFLEIAADLDLTH 252
Query: 194 NRIFKQRNVNIGTVKLEDAWGW----GFSGVMIRGS--------GAAWDLRKSQPYECYS 241
R ++ G E+ + GV+ A ++ P+ ++
Sbjct: 253 LGRAYDRFLSFGAYPGEEGPHYPAGTFADGVLGGVDEAAIAEDHTFARMEDRAAPHHPFA 312
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL------GKNKVGPVSASDPK 295
+ G + + + E+ + RQ ++ S +
Sbjct: 313 GSTIPDGFDETGYTWCKAPRLAGQPFETGALARQFMDGQPLARALVAAGGGNVFSRVIGR 372
Query: 296 IVPPKR--ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPY 353
++ R M+ + +L G + G EA +G G ++ +
Sbjct: 373 LIETARTLIAMEGWVRALEPAEPWCAHGTNPSEGRGAGLTEAARGALGHWMEVR-NGRIA 431
Query: 354 RCKIRAPGYAHLQ---------AMEFLCKGHQLAD-------VSAILGSLDIVFGEV 394
R +I AP + +E G + + V I+ S D
Sbjct: 432 RYQIIAPTTWNFSPRDAAGVPGPLEAALVGAPVQEGETTPLSVQHIVRSFDPCMVCT 488
>gi|153938437|ref|YP_001391095.1| [Ni/Fe] hydrogenase, large subunit [Clostridium botulinum F str.
Langeland]
gi|152934333|gb|ABS39831.1| [Ni/Fe] hydrogenase, large subunit [Clostridium botulinum F str.
Langeland]
Length = 471
Score = 189 bits (479), Expect = 8e-46, Method: Composition-based stats.
Identities = 57/442 (12%), Positives = 115/442 (26%), Gaps = 71/442 (16%)
Query: 22 GVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYA 81
G L + ++++ I+ + GLL RG EK++E + L ++ + +R+ + A
Sbjct: 15 GFLEIKVKVEDNIIIDGE-TSGLLFRGFEKMLEGRPPLDSIYFTERICGICSTAHATAST 73
Query: 82 LAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL--------------- 126
LA+E L I I IR + I +HL +
Sbjct: 74 LALENALNITPSINDIYIRDMMHGFEFIQNHLRQFYCFTVPSYVNLPNIRPIYPQEYSDF 133
Query: 127 -----------TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGC 175
+ G + G H+ GGV +I + I
Sbjct: 134 RLPKKLNERISSHYEEGIKYSRLAHEALAVLGGKAPHSHGIFVGGVTVNIDSYKLTKIQS 193
Query: 176 WCDSFPSAL------------NDISDLL-TGNRIFKQRNVNIGTVKLEDAWGWGFSGVMI 222
+ + + GN + + + + GV+I
Sbjct: 194 ILKAIKKFVNIYMLEDMNIIAQYYPEYFNLGNTYGNFMSFGVFDKYKDKNISYVKPGVII 253
Query: 223 RGSGAAWDLRKSQPYECYSELDFDIPIGKH--------------GDCYDRYLVRMMEMRE 268
+D K Y+ D I + + E
Sbjct: 254 NNKVENFDRDKITENIRYAWYVSDTIIENPIVNNEYTVDLKKEGAYSFVKAPRYADLPME 313
Query: 269 SVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV-G 327
+ R + + K ++ ++ I Y++P
Sbjct: 314 VGPLARLKIAGEYTGGNSSMDRNIARVLETKKIINILYNISEKIQLLSNNQSAYNIPESA 373
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA---------MEFLCKGHQLA 378
++ +G ++ I P ++ E G ++
Sbjct: 374 FGEGLIDTTRGALSHFIKI-ENKTIKYYNIITPTAWNISPKDSNGIRGVGEKSLIGSKID 432
Query: 379 DVS------AILGSLDIVFGEV 394
++ I+ S D
Sbjct: 433 NIEKPVEIGRIIRSFDPCISCA 454
>gi|312136953|ref|YP_004004290.1| f420-non-reducing hydrogenase subunit a [Methanothermus fervidus
DSM 2088]
gi|41017303|sp|Q49179|MVHA_METFE RecName: Full=F420-non-reducing hydrogenase subunit A; AltName:
Full=Methyl viologen-reducing hydrogenase subunit alpha;
Short=MVH subunit A
gi|149805|gb|AAA72832.1| methyl viologen-reducing hydrogenase large subunit (mvhA)
[Methanothermus fervidus]
gi|311224672|gb|ADP77528.1| F420-non-reducing hydrogenase subunit A [Methanothermus fervidus
DSM 2088]
Length = 472
Score = 189 bits (479), Expect = 9e-46, Method: Composition-based stats.
Identities = 63/437 (14%), Positives = 115/437 (26%), Gaps = 64/437 (14%)
Query: 20 AHGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ ++LD E V+ H+ + RG EK ++ + +A R+ + +
Sbjct: 12 IEGHAKITVQLDEEGNVKDTRFHV-MEFRGFEKFLQGRRIEEAPRIVPRICGICQVQHHL 70
Query: 79 AYALAVEKLLGIEI---PIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG----------- 124
A A AV+ G E P +R + + + SH L+ A
Sbjct: 71 ASAKAVDACFGFEPEDIPETAYKMREIMNWASYVHSHGLHFYFLAAPDFIGGKDRETRNI 130
Query: 125 ------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
+ E R+ G +H F PGG+ ++ E E +
Sbjct: 131 FKIIQDSPDVAKQAIELRKNAQDIVAATGGRAIHPVSFIPGGITTELDKETQEKLLKKAK 190
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKS---- 234
+L V G +G G K+
Sbjct: 191 RNVEIAESTLELAIPIFEDNMDLVESLGTIETYHMGLVKNGTWDVYDGVVRVKDKNGENF 250
Query: 235 -----QPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVG-- 287
Y Y R S +++
Sbjct: 251 AEFGPDEYTKYIAEHVKPYSWLKFPYLKELGYPDGVYRVSPLSRLNVADKMPDAAPKAQE 310
Query: 288 --------------PVSASDPKIVPPKRAD--MKRSMESLIHHFKLYTEGYHVPVGEVYA 331
P+ +++ A M +E + K++ + GE
Sbjct: 311 YFKEFRNKFGYAQQPLLYHWARLIEMLAAAECMASVLEEDLSGKKIHGKLER-QEGEGVG 369
Query: 332 AVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLC---------KGHQLAD--- 379
VEAP+G + D + + + AME G + D
Sbjct: 370 IVEAPRGTLIHHYACDKNGIITKANLIVATVQNNPAMEMGIQKVAKERIKPGVDVDDKIY 429
Query: 380 --VSAILGSLDIVFGEV 394
+ ++ + D
Sbjct: 430 NLMEMVIRAYDPCLSCA 446
>gi|147668906|ref|YP_001213724.1| nickel-dependent hydrogenase, large subunit [Dehalococcoides sp.
BAV1]
gi|146269854|gb|ABQ16846.1| nickel-dependent hydrogenase, large subunit [Dehalococcoides sp.
BAV1]
Length = 526
Score = 189 bits (479), Expect = 9e-46, Method: Composition-based stats.
Identities = 66/500 (13%), Positives = 125/500 (25%), Gaps = 127/500 (25%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L++ +DG V+ +G L RG E ++ + AV R+ V P +
Sbjct: 12 IEGHLKIEATVDGGEVKDAKC-VGTLFRGFEIFMKDRDPRDAVHITQRICGVCPTSHGTT 70
Query: 80 YALAVEKLLGI--EIPIRGQLIRVLYSEIGRILS---HLLNVTTQAMDV----------- 123
AL ++ G+ +IP G+++R L I S H ++
Sbjct: 71 AALNLDAAFGVADKIPNNGRILRNLIQGANYIASHIVHFYHLAALDYVDVTEVADYDGTD 130
Query: 124 -----------------------------------------GALTPPLWGFEEREKLMVF 142
A+ + R
Sbjct: 131 PELLKVKDFIARALAAGDMSMLAPFYPRYEGDYRLPKKVAQAAVAHYVEALNMRRLAHEL 190
Query: 143 YERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN-----DISDLLTGNRIF 197
SG H+ GGV + + ++ ++ D+ + +
Sbjct: 191 SAIYSGRMPHSVAVVAGGVTSHPSIDSISSFMSKLNTLRHFIDNVYLPDVIAVAETYPDY 250
Query: 198 KQRNVNIGTVKLEDAWGWGFSG--------------------------VMIRGSGAAWDL 231
V G + + +G +
Sbjct: 251 FGIGVGCGNLLSYGVFDLEANGTNLATRQRLFTQGTVSASDLTLHTFDPNKITEDIKYGW 310
Query: 232 RKSQ-PYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKN------ 284
K + +E+ G + + E + R VN + G
Sbjct: 311 FKGETNEYPLNEVTEPDHTKAEGYSWLKAPRYENTPYEVGPLARMVVNYVAGDPVVQKMV 370
Query: 285 -------KVGPVSASDPKIVPPKRA--------DMKRSMESLIHHFKLYTEGYHVPVGEV 329
GP + RA +M + + L + + E
Sbjct: 371 NDTLAHFGAGPAALFSTLGRHAARALECKIVADEMVKWVMELKIGEPVCADYEIPESAEG 430
Query: 330 YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLAD- 379
EAP+G G ++ +K + P + +E G ++ D
Sbjct: 431 MGLWEAPRGALGHWIKI-ENHKISNYQCVVPSTWNCSPKDGQGVNGPVEQALIGTKVRDN 489
Query: 380 -----VSAILGSLDIVFGEV 394
+ I+ S D
Sbjct: 490 DNPFELVRIVRSFDPCLACA 509
>gi|45659240|ref|YP_003326.1| hydrogenase subunit [Leptospira interrogans serovar Copenhageni
str. Fiocruz L1-130]
gi|45602486|gb|AAS71963.1| hydrogenase subunit [Leptospira interrogans serovar Copenhageni
str. Fiocruz L1-130]
Length = 466
Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats.
Identities = 73/388 (18%), Positives = 141/388 (36%), Gaps = 34/388 (8%)
Query: 12 NFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYV 71
GP H + GE + +D +G RG LI+ K ++PY + +
Sbjct: 108 AVGPIHAGVIEPGHFRFIVKGEEIRSLDIRLGFQKRGLIDLIKGKGPKDSIPYAEAISGD 167
Query: 72 APMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLW 131
+ ++ A++ E+ I +P R++ E+ R+ +H+ ++ A D+G
Sbjct: 168 STISYAIAFSRIFEEAQNIAVPQELDFARLVLLELERVATHIGDMGAIAGDIGYYPLQGV 227
Query: 132 GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDI--PPELVEDIGCWCDSFPSALNDISD 189
+R + E +G+R PG + ++++ S + +
Sbjct: 228 CSLQRGIPLGVMEALTGNRFGRGALSPGKIFFRKGLDRNKLKELSERIRSVTEEVVGHFE 287
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQP-YECYSELDFD-I 247
G ++R + G ++ + GF G++ + +G DLR + Y S + +
Sbjct: 288 RAAGRSTNRERLQSCGVIRQKQVRHLGFIGMVEKCTGLNRDLRNLEKSYAFSSPISLELN 347
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
GD + R+ +R E++ S K + + + +L
Sbjct: 348 RDQMRGDAWARFYLRYEELKNSSKWLVEAIPKLEA------------------------- 382
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
+L F V G Y+AVE +G V L D IR + A
Sbjct: 383 --ALDLKFGKSNP---VKKGMYYSAVEGWRGPVLVSLDLDSNGTIENTYIREVSVPNWHA 437
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVD 395
+E +G + D S ++ + VD
Sbjct: 438 LELAVRGEYIGDFPLNNKSFNLSYVGVD 465
>gi|289432091|ref|YP_003461964.1| nickel-dependent hydrogenase large subunit [Dehalococcoides sp. GT]
gi|288945811|gb|ADC73508.1| nickel-dependent hydrogenase large subunit [Dehalococcoides sp. GT]
Length = 526
Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats.
Identities = 66/500 (13%), Positives = 125/500 (25%), Gaps = 127/500 (25%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L++ +DG V+ +G L RG E ++ + AV R+ V P +
Sbjct: 12 IEGHLKIEATVDGGEVKDAKC-VGTLFRGFEIFMKDRDPRDAVHITQRICGVCPTSHGTT 70
Query: 80 YALAVEKLLGI--EIPIRGQLIRVLYSEIGRILS---HLLNVTTQAMDV----------- 123
AL ++ G+ +IP G+++R L I S H ++
Sbjct: 71 AALNLDAAFGVADKIPNNGRILRNLIQGANYIASHIVHFYHLAALDYVDVTEVADYDGTD 130
Query: 124 -----------------------------------------GALTPPLWGFEEREKLMVF 142
A+ + R
Sbjct: 131 PELLKVKDFISRALAAGDMSMLAPFYPRYEGDYRLPKKVAQAAVAHYVEALNMRRLAHEL 190
Query: 143 YERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN-----DISDLLTGNRIF 197
SG H+ GGV + + ++ ++ D+ + +
Sbjct: 191 SAIYSGRMPHSVAVVAGGVTSHPSIDSISSFMSKLNTLRHFIDNVYLPDVIAVAETYPDY 250
Query: 198 KQRNVNIGTVKLEDAWGWGFSG--------------------------VMIRGSGAAWDL 231
V G + + +G +
Sbjct: 251 FGIGVGCGNLLSYGVFDLEANGTNLATRQRLFTQGTVSASDLTLHTFDPNKITEDIKYGW 310
Query: 232 RKSQ-PYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKN------ 284
K + +E+ G + + E + R VN + G
Sbjct: 311 FKGETNEYPLNEVTEPDHTKAEGYSWLKAPRYENTPYEVGPLARMVVNYVAGDPVVQKMV 370
Query: 285 -------KVGPVSASDPKIVPPKRA--------DMKRSMESLIHHFKLYTEGYHVPVGEV 329
GP + RA +M + + L + + E
Sbjct: 371 NDTLAHFGAGPAALFSTLGRHAARALECKIVADEMVKWVMELKIGEPVCADYEIPESAEG 430
Query: 330 YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLAD- 379
EAP+G G ++ +K + P + +E G ++ D
Sbjct: 431 MGLWEAPRGALGHWIKI-ENHKISNYQCVVPTTWNCSPKDGQGVYGPVEQALIGTKVRDN 489
Query: 380 -----VSAILGSLDIVFGEV 394
+ I+ S D
Sbjct: 490 DNPFELVRIVRSFDPCLACA 509
>gi|94266317|ref|ZP_01290019.1| Nickel-dependent hydrogenase, large subunit [delta proteobacterium
MLMS-1]
gi|93453071|gb|EAT03550.1| Nickel-dependent hydrogenase, large subunit [delta proteobacterium
MLMS-1]
Length = 473
Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats.
Identities = 71/437 (16%), Positives = 124/437 (28%), Gaps = 64/437 (14%)
Query: 20 AHGVLRLILELDGEI-VERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G R+ + LD + V HI + RG E E + + R + P++ +
Sbjct: 13 IEGHARISIYLDDDGGVRDCRLHITQV-RGFEAFCEGRPLEEMPGLTSRTCGICPVSHQL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV--------------- 123
A A A ++LL ++IP L+R L + + SH L+ +
Sbjct: 72 ASAKACDQLLAVQIPPAAVLLRKLLNFGQLVQSHALSFFHLSSPDLLLGMDADPENRNIF 131
Query: 124 ----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R ER +G R+H + PGGV + + PE E I
Sbjct: 132 GLAAAFPEVARDGIALRRFGQQLIERLAGQRIHPNWVVPGGVSRPLSPENREAILAELPE 191
Query: 180 FPSALN----DISDLL----------------------TGNRIFKQ----RNVNIGTVKL 209
+ + +LL T NR+ R ++ G L
Sbjct: 192 MLAKAAGTLVRLEELLPGFSAEIAAFTPPSTSFMALAGTANRLEYYDGPLRLLDAGGQAL 251
Query: 210 EDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRES 269
+ G +I + KS Y +G + ++
Sbjct: 252 VENLPPHRYGEIIAEAVEGDSYLKSPYYRPQGPAQGVYRVGPLARLNLVANCGTPQADQA 311
Query: 270 VKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEV 329
+ R+ + + + + K E
Sbjct: 312 LGRFRELTAAKALPQSAFHYHYARLIEIIHGLERIGELLHEPEILGKRVRATAGANAPEG 371
Query: 330 YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH--------LQAMEFLCKGHQLAD-- 379
EAP+G + D K + + LQA L + Q ++
Sbjct: 372 VGICEAPRGTLIHHYGIDEEGKISAVNMIIATGNNNLAINQGLLQAARALIQNGQFSEGA 431
Query: 380 ---VSAILGSLDIVFGE 393
+ A++ D
Sbjct: 432 LNRIEALVRCYDPCLSC 448
>gi|198283183|ref|YP_002219504.1| nickel-dependent hydrogenase large subunit [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|198247704|gb|ACH83297.1| nickel-dependent hydrogenase large subunit [Acidithiobacillus
ferrooxidans ATCC 53993]
Length = 432
Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats.
Identities = 54/410 (13%), Positives = 114/410 (27%), Gaps = 30/410 (7%)
Query: 15 PQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPM 74
P G L LE+ ++ + I R EK +E + + + R+ + P+
Sbjct: 12 PVLARVEGEGALDLEVHDGRIQTLRLRIFEPPRLFEKFLEGREYQEIPDMVARICGICPV 71
Query: 75 NQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG---------- 124
+ + A+E + G + +R ++ I SH L++ A
Sbjct: 72 AYQMSAVHAIEGIFGQAPGPWVRAMRRVFYCGEWIQSHSLHIHLLAAPDFLGYSSASEMA 131
Query: 125 --ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
G + G +H R GG H+ + +
Sbjct: 132 RAHPDIVRRGLALQALGNEIIRFFGGRSVHPVGARVGGFHRAPSRAEAAVLREQVRAALP 191
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ + + G ++ G + + + +
Sbjct: 192 GAEALVAWTAALNLPDDPQDFVSVALRHPDEYPMNEGRIVSSDGLDIPIADYESHFREHQ 251
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+ D + + + ++ + V LG+ + S + + + A
Sbjct: 252 EPHSTALYAALDGRPYLVGPLARLNLNLDRLHMPVREALGRTGIAFPSRNMFHSIVARAA 311
Query: 303 DMKRSMESLIHHFKLYTEGY------HVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCK 356
++ ++ + YTE VG Y EAP+G D + +
Sbjct: 312 EIHYALLETSRLLEDYTEPEAPFVPAVPRVGIGYGCTEAPRGLLWHRYDLDAAGQVLHAR 371
Query: 357 IRAPGYAHLQAMEFLCK-----------GHQL-ADVSAILGSLDIVFGEV 394
I P + ME + G L ++ + D
Sbjct: 372 IVPPTSQNQARMEADLRHSLETLGLDRDGETLRQQAEMVIRNYDPCISCA 421
>gi|71908502|ref|YP_286089.1| nickel-dependent hydrogenase, large subunit [Dechloromonas
aromatica RCB]
gi|71848123|gb|AAZ47619.1| Nickel-dependent hydrogenase, large subunit [Dechloromonas
aromatica RCB]
Length = 505
Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats.
Identities = 71/481 (14%), Positives = 123/481 (25%), Gaps = 108/481 (22%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L L+L+ +V IG L+RG E+++ + ++ R+ + +A
Sbjct: 13 VEGDLEFQLDLEDGVVVDARC-IGTLYRGFEQIMIGRAPRDSLVITPRICGICGTAHLYA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP---------- 129
LA+E++ GI P +R L + S L
Sbjct: 72 ATLALEQIAGITPPAHAVHVRNLCLMAETLQSDLRQTFLFFTPDFCNPIYGSHPLATELS 131
Query: 130 -----------LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
+ +L+ G H+ Y PGG+ Q + D
Sbjct: 132 EAFAPLKGSVVRGCLKSTRELVGIVAIFGGQWPHSTYMLPGGISQPANNRRLLDSRDTLA 191
Query: 179 SFPSALN------DISDLL----------------TGNRIFKQRNVNIGTVKLEDAWGWG 216
S D+ + L T NR G G
Sbjct: 192 SVREWFEQTVIGGDLDEWLALDSGAALFRWLAASPTRNRSASGLFTRFARDIGLHQLGSG 251
Query: 217 F-----SGVMIRGSG----------------------------AAWDLRKSQPYECYSEL 243
GV R G P +
Sbjct: 252 TGHLLSYGVNHRPDGSGSELPAGFFNADTQQVEPLDHLQINEHVRHSWFLDYPGGKHPWQ 311
Query: 244 DFDIPIGKHG---DCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
IP + G + + + ++ + + + + +
Sbjct: 312 GETIPNHQPGTDRYTWAKAPRYGNRVVQTGPLAELRIAGDPLITDLLTSEGDNTWLRQFA 371
Query: 301 RAD-----------MKRSMESLIHHFKLYTEGYHV-PVGEVYAAVEAPKGEFGVYLISDG 348
R +S+++L++ G V P GE Y VEA +G G +L
Sbjct: 372 RLRRAGWLLNSMAGTIKSLKALVNEPHFIDPGIDVWPNGESYGMVEAARGALGHWLSIK- 430
Query: 349 GNKPYRCKIRAPGYAHLQA---------MEFLCKGHQLAD------VSAILGSLDIVFGE 393
+ +I P + E G + D + I+ S D
Sbjct: 431 NGVIEKYQIVTPTAWNASPRDSSGQHGHWERSIIGLTVPDPENPVEIGHIVRSHDPCLVC 490
Query: 394 V 394
Sbjct: 491 T 491
>gi|170757099|ref|YP_001781388.1| [Ni/Fe] hydrogenase, large subunit [Clostridium botulinum B1 str.
Okra]
gi|169122311|gb|ACA46147.1| [Ni/Fe] hydrogenase, large subunit [Clostridium botulinum B1 str.
Okra]
Length = 471
Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats.
Identities = 57/442 (12%), Positives = 113/442 (25%), Gaps = 71/442 (16%)
Query: 22 GVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYA 81
G L + + ++ I+ + GLL RG EK++E + L ++ + +R+ + A
Sbjct: 15 GFLEIKVIVEDNIIIDGE-TSGLLFRGFEKMLEGRPPLDSIYFTERICGICSTAHATAST 73
Query: 82 LAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL--------------- 126
LA+E L I I IR + I +HL +
Sbjct: 74 LALENALNITPSINDIYIRDMMHGFEFIQNHLRQFYCFTVPSYVNLPNIRPIYPQEYSDF 133
Query: 127 -----------TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGC 175
+ G + G H+ GGV +I + I
Sbjct: 134 RLPKKLNERISSHYEEGIKYSRLAHEALAVLGGKAPHSHGIFVGGVTVNIDSYKLTKIQS 193
Query: 176 ------------WCDSFPSALNDISDLL-TGNRIFKQRNVNIGTVKLEDAWGWGFSGVMI 222
+ + GN + + + + GV+I
Sbjct: 194 ILKTIKKFVNIYMLEDMNIIAQYYPEYFNLGNTYGNFMSFGVFDKYKDKNISYVKPGVII 253
Query: 223 RGSGAAWDLRKSQPYECYSELDFDIPIGKH--------------GDCYDRYLVRMMEMRE 268
+D K Y+ D I + + E
Sbjct: 254 NNKVENFDRDKITENIRYAWYVSDTIIENPIVNNEYTVDLKKEGAYSFVKAPRYDGLPME 313
Query: 269 SVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV-G 327
+ R + + K ++ ++ I Y++P
Sbjct: 314 VGPLARLKIAGEYTGGNSSMDRNIARVLETKKIINILYNISEKIQLLSNNQSAYNIPESA 373
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA---------MEFLCKGHQLA 378
++ +G ++ I P ++ E G ++
Sbjct: 374 FGEGLIDTTRGALSHFIKI-ENKTIKYYNIITPTAWNISPKDSKGTRGVGEKSLIGSKID 432
Query: 379 DVS------AILGSLDIVFGEV 394
++ I+ S D
Sbjct: 433 NIEKPVEIGRIIRSFDPCISCA 454
>gi|54295302|ref|YP_127717.1| hypothetical protein lpl2387 [Legionella pneumophila str. Lens]
gi|53755134|emb|CAH16627.1| hypothetical protein lpl2387 [Legionella pneumophila str. Lens]
Length = 430
Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats.
Identities = 55/435 (12%), Positives = 122/435 (28%), Gaps = 51/435 (11%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ +IN P G L L + ++ + I R EK +E +++ + + +
Sbjct: 2 GKDISINV-PILARVEGEGALELCIRDSKIDTLKLKIYEPPRLFEKFLEGRSYNEVLDFV 60
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG- 124
R+ + P+ + + A+E+ + + +R L+ + SH L+V A+
Sbjct: 61 ARICGICPVAYQMSATQAIEQCFNLSPTPWVRDMRRLFYCGEWLESHSLHVYFLALPDFL 120
Query: 125 -----------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDI 173
G + + G +H GG ++ ++ I
Sbjct: 121 GFQSAPEMARKYPEEVKCGLRIQAFGNDLIKLLGGRSVHPVGACVGGFYKAPSHSQIKLI 180
Query: 174 GCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRK 233
S + L + + G ++ G +
Sbjct: 181 LDKAKDRVSDCEALIAWLASLSLPDNSHDFTSVSLYHPTEYPMNEGRIVSDRGLNISKEE 240
Query: 234 SQPYECYSELDFDIPIG-------KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKV 286
Y +D+ + R + + ++ Q +N
Sbjct: 241 FDSYFKEHHVDYSNALHCLLQNKPYLVGPLARINNCFGHLPVPIHLLLQSLN------IQ 294
Query: 287 GPVSASDPKIVPPKRADMKRSMESLIHHF-----KLYTEGYHVPVGEVYAAVEAPKGEFG 341
P I+ +E++ + + GE EAP+G
Sbjct: 295 FPSRNMCHSIIARAVEMYYCVLEAIRILEQYDLPEQSSPEIKPQAGEGAGCTEAPRGMLW 354
Query: 342 VYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLA-------DV-----SAILGSLDI 389
+ + D + + +I P + +E K + + I+ + D
Sbjct: 355 QHYVFDETGQVLQARIVPPTSQNQARIEEDLKHSLIQFGLNQEEEALRYFSEMIIRNYDP 414
Query: 390 VFGE--------VDR 396
+DR
Sbjct: 415 CISCSTHFLNLKIDR 429
>gi|220934312|ref|YP_002513211.1| nickel-dependent hydrogenase large subunit [Thioalkalivibrio sp.
HL-EbGR7]
gi|219995622|gb|ACL72224.1| nickel-dependent hydrogenase large subunit [Thioalkalivibrio sp.
HL-EbGR7]
Length = 431
Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats.
Identities = 65/422 (15%), Positives = 119/422 (28%), Gaps = 34/422 (8%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
++R+ +N G L + +GE V V I R E + + F +A
Sbjct: 2 SQTRTIEVN---ALARVEGEGALYVRTEGERVAEVKLRIYEPPRFFEGFLIGRDFREAPD 58
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
R+ + P+ + + A+E++ G+ + + +R L I SH L+V +
Sbjct: 59 ITARICGICPVAYQMGASQAIEQVCGVSLDPALEDLRRLIYCGEWIESHGLHVFMLHLPD 118
Query: 124 G------------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
++ G +H + GG ++ P
Sbjct: 119 FLGYPDGITMARDHPELVRNALRIKKIGNALMRLVGGREVHPVNLKVGGFYRAPTPAEAA 178
Query: 172 DIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDL 231
+ A + D L G + G + SG +
Sbjct: 179 ALREDLAWGLEASAEALDFLAGLDFPDFEMDYEFVSLVHPDEYPILHGRLGSTSGIDAPV 238
Query: 232 RKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIR--QCVNRLLGKNKVGPV 289
+ + + H R R ++ R L K +G V
Sbjct: 239 EDYDRIFTETHVIHSNALHSHLSETGRPACLGPLARFALNRERLTPRAAALAEKAGLGAV 298
Query: 290 SASDPKIVPPKRADMKRSMESLIHHFKLYTEGYH------VPVGEVYAAVEAPKGEFGVY 343
+ K + + ++ + E + Y G Y A EAP+G
Sbjct: 299 CRNPFKSILVRMVEIAFAFEEALRLVDAYQAPARPAVDMTPRAGTGYGATEAPRGICYHR 358
Query: 344 LISDGGNKPYRCKIRAPGYAHLQAMEFLCKG-----HQLAD------VSAILGSLDIVFG 392
D KI AP + ++E G L D ++ + D
Sbjct: 359 YTLDEAGIIRDAKIVAPTSVNQPSIEADLHGFVQDNLDLPDDQLRHRCEQVIRNYDPCIS 418
Query: 393 EV 394
Sbjct: 419 CA 420
>gi|73748064|ref|YP_307303.1| Ni/Fe hydrogenase large subunit [Dehalococcoides sp. CBDB1]
gi|73659780|emb|CAI82387.1| Ni/Fe hydrogenase large subunit [Dehalococcoides sp. CBDB1]
Length = 526
Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats.
Identities = 66/500 (13%), Positives = 125/500 (25%), Gaps = 127/500 (25%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L++ +DG V+ +G L RG E ++ + AV R+ V P +
Sbjct: 12 IEGHLKIEATVDGGEVKDAKC-VGTLFRGFEIFMKDRDPRDAVHITQRICGVCPTSHGTT 70
Query: 80 YALAVEKLLGI--EIPIRGQLIRVLYSEIGRILS---HLLNVTTQAMDV----------- 123
AL ++ G+ +IP G+++R L I S H ++
Sbjct: 71 AALNLDAAFGVADKIPNNGRILRNLIQGANYIASHIVHFYHLAALDYVDVTEVADYDGTD 130
Query: 124 -----------------------------------------GALTPPLWGFEEREKLMVF 142
A+ + R
Sbjct: 131 PELLKVKDFISRALAAGDMSMLAPFYPRYEGDYRLPKKVAQAAVAHYVEALNMRRLAHEL 190
Query: 143 YERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN-----DISDLLTGNRIF 197
SG H+ GGV + + ++ ++ D+ + +
Sbjct: 191 SAIYSGRMPHSVAVVAGGVTSHPSIDSISSFMSKLNTLRHFIDNVYLPDVIAVAETYPDY 250
Query: 198 KQRNVNIGTVKLEDAWGWGFSG--------------------------VMIRGSGAAWDL 231
V G + + +G +
Sbjct: 251 FGIGVGCGNLLSYGVFDLEANGTNLATRQRLFTQGTVSASDLTLHTFDPNKITEDIKYGW 310
Query: 232 RKSQ-PYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR----------- 279
K + +E+ G + + E + R VN
Sbjct: 311 FKGETNEYPLNEVTEPDHTKAEGYSWLKAPRYENTPYEVGPLARMVVNYVAGDPVVQKMV 370
Query: 280 --LLGKNKVGPVSASDPKIVPPKRA--------DMKRSMESLIHHFKLYTEGYHVPVGEV 329
+L GP + RA +M + + L + + E
Sbjct: 371 NDILAHFGAGPAALFSTLGRHAARALECKIVADEMVKWVMELKIGEPVCADYEIPESAEG 430
Query: 330 YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLAD- 379
EAP+G G ++ +K + P + +E G ++ D
Sbjct: 431 MGLWEAPRGALGHWIKI-ENHKISNYQCVVPTTWNCSPKDGQGVYGPVEQALIGTKVRDN 489
Query: 380 -----VSAILGSLDIVFGEV 394
+ I+ S D
Sbjct: 490 DNPFELVRIVRSFDPCLACA 509
>gi|66361138|pdb|1YQ9|H Chain H, Structure Of The Unready Oxidized Form Of [nife]
Hydrogenase
gi|66361140|pdb|1YQ9|I Chain I, Structure Of The Unready Oxidized Form Of [nife]
Hydrogenase
Length = 536
Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats.
Identities = 71/519 (13%), Positives = 130/519 (25%), Gaps = 147/519 (28%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E++G ++ + L RG E +++ + A + R V A
Sbjct: 17 IEGHLRIEVEVEGGKIKNA-WSMSTLFRGLEMILKGRDPRDAQHFTQRACGVCTYVHALA 75
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV------GALTPPLWGF 133
AV+ +G++IP L+R L + HL++ P
Sbjct: 76 SVRAVDNCVGVKIPENATLMRNLTMGAQYMHDHLVHFYHLHALDWVNVANALNADPAKAA 135
Query: 134 EE------REKLMVFYERASGS-------------------RMHAAYFRPGGVHQDIPPE 168
R+ + H AY P V
Sbjct: 136 RLANDLSPRKTTTESLKAVQAKVKALVESGQLGIFTNAYFLGGHPAYVLPAEVDLIATAH 195
Query: 169 LVEDIGCWCDSFPSALND------------------------------------------ 186
+E + + +
Sbjct: 196 YLEALRVQVKAARAMAIFGAKNPHTQFTVVGGCTNYDSLRPERIAEFRKLYKEVREFIEQ 255
Query: 187 -ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGS-----GAAWD---------- 230
L F + IG G + S G W
Sbjct: 256 VYITDLLAVAGFYKNWAGIGKTSNFLTCGEFPTDEYDLNSRYTPQGVIWGNDLSKVDDFN 315
Query: 231 ---LRKSQPYECYSELD------------FDIPIGKHGDCYDRYLVRMMEMRESVKI--- 272
+ + Y Y D + G+ + + E E +
Sbjct: 316 PDLIEEHVKYSWYEGADAHHPYKGVTKPKWTEFHGEDRYSWMKAPRYKGEAFEVGPLASV 375
Query: 273 ----------IRQCVNRLLGKNKVGPVSASDPKIVPPKRA--------DMKRSMESLIHH 314
+ V+ +L VGP + R +++ ++ L +
Sbjct: 376 LVAYAKKHEPTVKAVDLVLKTLGVGPEALFSTLGRTAARGIQCLTAAQEVEVWLDKLEAN 435
Query: 315 FK-----LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH----- 364
K LYT+ + + V AP+G +++ G K ++ P +
Sbjct: 436 VKAGKDDLYTDWQYPTESQGVGFVNAPRGMLSHWIVQRG-GKIENFQLVVPSTWNLGPRC 494
Query: 365 ----LQAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
L A+E G +AD + + S D
Sbjct: 495 AEGKLSAVEQALIGTPIADPKRPVEILRTVHSYDPCIAC 533
>gi|218441069|ref|YP_002379398.1| nickel-dependent hydrogenase large subunit [Cyanothece sp. PCC
7424]
gi|218173797|gb|ACK72530.1| nickel-dependent hydrogenase large subunit [Cyanothece sp. PCC
7424]
Length = 474
Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats.
Identities = 69/441 (15%), Positives = 117/441 (26%), Gaps = 74/441 (16%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ L LD VE H+ + +RG EK E + + R+ + P++
Sbjct: 13 IEGHAKISLFLDDAGEVEDARFHV-VEYRGFEKFCEGRPMWEMSGITARICGICPVSHLL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A +K+L ++IP G+ +R L + SH L+ +
Sbjct: 72 CAAKTGDKILAVQIPPAGEKLRRLMNLAQITQSHALSFFHLSSPDFLLGWDSDPAKRNIF 131
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ E ++H A+ PGGV + E + I
Sbjct: 132 GLIAADPDLARSGIRLRQFGQQIIELLGAKKIHPAWAVPGGVRYPLSEEGRQWIRDRLPE 191
Query: 180 FPSALNDISDLLTG-NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA----------- 227
L +L F G G +G G
Sbjct: 192 SRDTLYTALNLFKRLLDQFDTEVKTFGDFPSLFMGLVGKNGEWEHYGGHIRFTDSEGNIV 251
Query: 228 ------------------AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRES 269
W K Y+ D +G R +
Sbjct: 252 ADNLSEDNYQDFIGESVEKWSYLKFPYYKPMGYPDGIYRVGP----LARLNICSNFGTPE 307
Query: 270 VKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVG-- 327
Q G +++ A +E LI+ + + G
Sbjct: 308 ADRELQEFRDRAGGVATSSFFYHYARLIEILGA--LERIERLINDPDIVSSRTRAEAGIN 365
Query: 328 --EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLC--------KGHQL 377
E EAP+G + D + + + AM G+++
Sbjct: 366 TLEGIGVSEAPRGTLFHHYQVDENGLIQKVNLIIATGNNNLAMNKTIGQIAKHYVHGNEI 425
Query: 378 AD-----VSAILGSLDIVFGE 393
A+ V A + D
Sbjct: 426 AEGMLNRVEAGIRCYDPCLSC 446
>gi|213400899|gb|ACJ47098.1| NADH dehydrogenase subunit D [Wolbachia endosymbiont of Dirofilaria
immitis]
Length = 208
Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats.
Identities = 123/211 (58%), Positives = 162/211 (76%), Gaps = 4/211 (1%)
Query: 102 LYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGV 161
L+ E+ RIL+HLLN+++QA+DVGA+TP LW FEEREK++ FYERASG+R HAAY RPGG+
Sbjct: 2 LFCELTRILNHLLNISSQALDVGAMTPLLWLFEEREKILEFYERASGARFHAAYIRPGGI 61
Query: 162 HQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVM 221
D+P L EDI + + FP ++DI DLLT NRI+KQR V I + ++ WGFSG M
Sbjct: 62 AADVPEGLTEDIAKFIEQFPKYIDDIDDLLTENRIWKQRTVGISEMSIKQVLDWGFSGPM 121
Query: 222 IRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL 281
+R +G AWDLRKSQPYE Y +LDFDIPIG++GDCYDRYLVRM E+R+S ++++QC+ ++
Sbjct: 122 LRAAGLAWDLRKSQPYEIYDQLDFDIPIGQNGDCYDRYLVRMEEIRQSTRLVKQCIEKM- 180
Query: 282 GKNKVGPVSASDPKIVPPKRADMKRSMESLI 312
GP+ D KI PP RA+MK+SME+LI
Sbjct: 181 ---PEGPIKTEDRKISPPPRAEMKKSMEALI 208
>gi|218666693|ref|YP_002425412.1| [NiFe] hydrogenase, alpha subunit, putative [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|218518906|gb|ACK79492.1| [NiFe] hydrogenase, alpha subunit, putative [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 422
Score = 187 bits (476), Expect = 2e-45, Method: Composition-based stats.
Identities = 54/410 (13%), Positives = 114/410 (27%), Gaps = 30/410 (7%)
Query: 15 PQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPM 74
P G L LE+ ++ + I R EK +E + + + R+ + P+
Sbjct: 2 PVLARVEGEGALDLEVHDGRIQTLRLRIFEPPRLFEKFLEGREYQEIPDMVARICGICPV 61
Query: 75 NQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG---------- 124
+ + A+E + G + +R ++ I SH L++ A
Sbjct: 62 AYQMSAVHAIEGIFGQAPGPWVRAMRRVFYCGEWIQSHSLHIHLLAAPDFLGYSSASEMA 121
Query: 125 --ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
G + G +H R GG H+ + +
Sbjct: 122 RAHPDIVRRGLALQALGNEIIRFFGGRSVHPVGARVGGFHRAPSRAEAAVLREQVRAALP 181
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ + + G ++ G + + + +
Sbjct: 182 GAEALVAWTAALNLPDDPQDFVSVALRHPDEYPMNEGRIVSSDGLDIPIADYESHFREHQ 241
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+ D + + + ++ + V LG+ + S + + + A
Sbjct: 242 EPHSTALYAALDGRPYLVGPLARLNLNLDRLHMPVREALGRTGIAFPSRNMFHSIVARAA 301
Query: 303 DMKRSMESLIHHFKLYTEGY------HVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCK 356
++ ++ + YTE VG Y EAP+G D + +
Sbjct: 302 EIHYALLETSRLLEDYTEPEAPFVPAVPRVGIGYGCTEAPRGLLWHRYDLDAAGQVLHAR 361
Query: 357 IRAPGYAHLQAMEFLCK-----------GHQL-ADVSAILGSLDIVFGEV 394
I P + ME + G L ++ + D
Sbjct: 362 IVPPTSQNQARMEADLRHSLETLGLDRDGETLRQQAEMVIRNYDPCISCA 411
>gi|61224818|gb|AAX40740.1| HupV [Thiocapsa roseopersicina]
Length = 481
Score = 187 bits (476), Expect = 2e-45, Method: Composition-based stats.
Identities = 65/481 (13%), Positives = 128/481 (26%), Gaps = 100/481 (20%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
T+ GP + G L + LE+ V + + L+RG E++++ K + R+
Sbjct: 3 TLTLGPFN-RVEGDLEVQLEVTDGRVRKARVNSP-LYRGFEQILQGKDPRDTLVITPRIC 60
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ ++Q A A A+ G+ +P G+L L + HL + M A
Sbjct: 61 GICSVSQSVAAAYALADAAGVAMPPNGELATNLILACENLADHLTHFYLFFMPDFARPVY 120
Query: 130 ----LWG-----------------FEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE 168
+ R M +G H+ +PGG + + +
Sbjct: 121 ADRPWYADTEMRFRALSGSAAGVVLPARAHFMHLMGLLAGKWPHSLSLQPGGTAKPVQAQ 180
Query: 169 LVEDIGCWCDSFPSALND------------------ISDLLTGNRIFKQRNVNI------ 204
+ +F L + + +
Sbjct: 181 ERIRLLAILGAFRRFLERETFGDPLETLVALDSASALDAWAARDPGRGDLRRFLQIADDL 240
Query: 205 --------------------GTVKLEDAWGWGFSGV------MIRGSGAAWDLRKSQPYE 238
G +L W +G I + + P
Sbjct: 241 GLARLGRATDRFMSYSAYPSGGDRLFRTGLWADTGPQPLDIASIAEDPSHSWMVGGDPLH 300
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
+ + + + + E + RQ ++ + S + +
Sbjct: 301 PADGVTIPDAEKANAYSWCKAPRLAGGVIEVGALARQLIDGHPLIRDLVSESGGNVRNRV 360
Query: 299 PKRA--------DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGN 350
R M+ ++++ + VEA +G G +L
Sbjct: 361 IARLLELARVLMAMEDWVKAIAPGEPFCEQTAIPDEAIGVGLVEAARGSLGHWLTIR-RG 419
Query: 351 KPYRCKIRAPGYAHLQ---------AMEFLCKG--------HQLADVSAILGSLDIVFGE 393
+ +I AP + A+E G +A V I+ S D
Sbjct: 420 RVLNYQIIAPTTWNFSPRDAAGVPGALEQALVGAEVRPGETTPVA-VQHIVRSFDPCMVC 478
Query: 394 V 394
Sbjct: 479 T 479
>gi|47177025|ref|YP_015636.1| HoxV [Oligotropha carboxidovorans OM5]
gi|47115416|emb|CAG28469.1| HoxV [Oligotropha carboxidovorans OM5]
Length = 484
Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats.
Identities = 70/475 (14%), Positives = 124/475 (26%), Gaps = 97/475 (20%)
Query: 14 GPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAP 73
GP + G L + L+++G V R L RG E+++E K A+ R+ +
Sbjct: 11 GPFN-RVEGDLEIRLDINGSAV-RAAYVNSPLFRGFEQILEGKDPRDALTIVPRICGICS 68
Query: 74 MNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP---- 129
++Q A A A+ GI P G+ I + I HL + M A
Sbjct: 69 VSQSMAAAHALAAAEGIAPPPNGERIAAIIHAAENIADHLTHFHIFFMADFARAIYAGES 128
Query: 130 -----------------LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVED 172
R L+ +G H +PGG +
Sbjct: 129 WYGMASEQFRAKNGSSVQDAMNARASLLHIMGLLAGKWPHTLSVQPGGATKAPDQRDRVR 188
Query: 173 IGCWCDSFPSALND-----------ISDLLTGNRIFKQRNVNIGTVKLEDAWGW------ 215
+ F + D L R + G+++L
Sbjct: 189 LLAIIRQFKDWIEKSIFAAPVERILAIDSLESLRAYHAEAPQHGSLRLFLTICDTLELGS 248
Query: 216 GFSGVMIRGSGAAWDLR-------------KSQPY-------------------ECYSEL 243
G S A+ + K P +
Sbjct: 249 MGLGPKRFMSYGAYPMDGRHLLPPGIWLNGKIMPVDTGLIAEDLTSAWMNGETAHPFEGR 308
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR-- 301
+G + + + E R + + A++ + R
Sbjct: 309 TLPDETMANGYSWCKAPRMAGQTVEVGAFARMLIADHPLAQGLLQDGAANVRARVVGRLF 368
Query: 302 ------ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRC 355
M++ ++ G +V EA +G G +L+ +
Sbjct: 369 EIASTVLAMEQWAADIVPGEPAMVHGRIPQSAKVEGLTEAARGSLGHWLVV-EKGRIASY 427
Query: 356 KIRAPGYAHLQ---------AMEFLCKGHQLAD-------VSAILGSLDIVFGEV 394
+I AP + +E +G + V I+ S D
Sbjct: 428 QIIAPTTWNFSPRDQAGTPGPVEQALRGAPVRHGEETPVSVQHIVRSFDPCMVCT 482
>gi|257053169|ref|YP_003131002.1| nickel-dependent hydrogenase large subunit [Halorhabdus utahensis
DSM 12940]
gi|256691932|gb|ACV12269.1| nickel-dependent hydrogenase large subunit [Halorhabdus utahensis
DSM 12940]
Length = 472
Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats.
Identities = 60/438 (13%), Positives = 117/438 (26%), Gaps = 68/438 (15%)
Query: 20 AHGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD E VE H+ RG E+ +E + + R+ + P++ +
Sbjct: 13 VEGHGKITIHLDDEGSVEDAQFHV-TEFRGFEEFVEGRPIWEMPEITARICGICPVSHQL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV--------------- 123
A A A + ++ ++P +R L + SH L+ +
Sbjct: 72 AAAKAADDVMDADVPESAHKLRELMHMGQVLQSHALSFFYLSSPDLVLGYDADPADRNIE 131
Query: 124 ----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G + R ++H + GGV + E ED+
Sbjct: 132 GVLAENPQLAERGIDLRSFGQNVIAALGEKKVHPDFAVAGGVSNTLDREDGEDLLEESQP 191
Query: 180 FPSALNDISDLLTG-NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSG------------ 226
+ + DLL ++ T G + G
Sbjct: 192 LAGYVRETIDLLKDIFEEMDDDTLDYATYPTGYMGLVTEEGGLEHYDGDIRLVDESGDQL 251
Query: 227 ----------------AAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESV 270
W K Y+ D +G VR + E
Sbjct: 252 EEIDDGAYRDIIAERSKEWSYLKFPYYKDRGFEDGQYRVGPLARLNAVDDVRTPQAHE-- 309
Query: 271 KIIRQCVNRLLGKNKVGPVSASDPKIVPPKR--ADMKRSMESLIHHFKLYTEGYHVPVGE 328
+ ++ G +++ ++ +E + + G
Sbjct: 310 -EWVEFMDAAEGAVHERSTYYHWARLIEMLYCVERIQELLEDDDVYDGITNIPTKPKAGT 368
Query: 329 VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM--------EFLCKGHQLAD- 379
+EAP+G D G K + AM E G ++ +
Sbjct: 369 GVGVIEAPRGTLIHEYTIDDGGKVENANFIVATTHNNGAMNKGVTSAAETFIDGPEIPEG 428
Query: 380 ----VSAILGSLDIVFGE 393
+ +++ D
Sbjct: 429 ILNKMESVIRCYDPCLSC 446
>gi|218244986|ref|YP_002370357.1| nickel-dependent hydrogenase large subunit [Cyanothece sp. PCC
8801]
gi|218165464|gb|ACK64201.1| nickel-dependent hydrogenase large subunit [Cyanothece sp. PCC
8801]
Length = 474
Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats.
Identities = 72/441 (16%), Positives = 118/441 (26%), Gaps = 74/441 (16%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD VE H+ + +RG EK E + + R+ + P++
Sbjct: 13 IEGHAKISIFLDDSGSVEDARFHV-VEYRGFEKFCEGRPMWEMAGITARICGICPVSHLL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A A +K+L + IP + +R L + SH L+ +
Sbjct: 72 ASAKTGDKILAVAIPPAAEKLRRLMNLAQITQSHALSFFHLSSPDFLLGWDSDPAKRNVF 131
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ E ++HAA+ PGGV + E + I
Sbjct: 132 GLIEANPELARSGIRLRQFGQQIIELLGAKKIHAAWTVPGGVRSPLSEEGRQWIRDRLPE 191
Query: 180 FPSALNDISDLLTG-NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA----------- 227
+ LN +L F G G G G
Sbjct: 192 SRATLNIALNLFKDLLDQFSTEVTTFGKFPSLFMGLVGEDGSWEHYGGHIRFTDSQGNIV 251
Query: 228 ------------------AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRES 269
W K Y+ D +G E
Sbjct: 252 ADHLNEDNYKDFIGESVEKWTYLKFPYYKPLGYPDGIYRVGPLARLNICTHFGTPEADRE 311
Query: 270 VKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVG-- 327
++ RQ V S + +E LI + ++ G
Sbjct: 312 LQEYRQ------RAGGVATSSFFYHYARLLEILASLEHIERLIDDPDIVSKHTRAKAGIN 365
Query: 328 --EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFL--------CKGHQL 377
E EAP+G + D + + + AM +G+QL
Sbjct: 366 ALEGIGVSEAPRGTLFHHYQVDENGLIKKVNLIIATGNNNLAMNQTVAQIAKHYIQGNQL 425
Query: 378 AD-----VSAILGSLDIVFGE 393
+ V A + D
Sbjct: 426 TEGMLNRVEAGIRCYDPCLSC 446
>gi|78357178|ref|YP_388627.1| periplasmic (NiFeSe) hydrogenase large subunit,
selenocysteine-containing [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
gi|78219583|gb|ABB38932.1| periplasmic (NiFeSe) hydrogenase, large subunit,
selenocysteine-containing [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
Length = 488
Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats.
Identities = 62/442 (14%), Positives = 116/442 (26%), Gaps = 97/442 (21%)
Query: 43 GLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVL 102
G + RG E ++ + A R+ V P A +A++K G+++ G+L R L
Sbjct: 49 GGMFRGFENILRGRDPRDASQIVQRICGVCPTAHSTASVMALDKAFGVKVTTNGRLTRNL 108
Query: 103 YSEIGRILSHLLNVTTQAMDVG---------------------------ALTPPLWGFEE 135
+ SH+L+ A A+ L E
Sbjct: 109 ILGANYMQSHILHFYHLAALDFVQGPETAPFVPRFKNPDLRLPSAVNQVAVDQYLEALEV 168
Query: 136 REKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND--------- 186
R G H GG + E + + + +
Sbjct: 169 RRICHEMVAIFGGRMPHVQGQVVGGTTEIPTKEALVEYAARFKKVRKFVEEKYVPVVYLV 228
Query: 187 ---ISDLLTGNRIFKQRNV-NIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
DL + +K + + E GV + G +D R + Y YS
Sbjct: 229 GSVYKDLFAFGQGYKNCVAFGVFPLNDEGTEFALKPGVYMDGEDKPFDARLIKEYVKYSW 288
Query: 243 LDF-------------DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPV 289
D P + + + E + R V + +G
Sbjct: 289 FDDSTTGLHYTEGQTIPDPEKPGAYSFVKAPRYNGKPCEVGPLARMWVAN-PELSPMGQK 347
Query: 290 SASDPKIVPPKRAD---------------------------MKRSMESLIHHFKLYTEGY 322
+ + KR ++R ++ ++ + Y
Sbjct: 348 MLKEHYGIDAKRFRDIGAEAAFSLMGRHVARAEETWLTTNYIERWLKEVVPGAETYVPSE 407
Query: 323 HVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCK 373
E EAP+G Y+ +I + + +E
Sbjct: 408 IPEQAEGTGFTEAPRGSLLHYIDIKDS-VISNYQIVSATLWNCNPRDDMGNRGPVEEALI 466
Query: 374 GHQLADVS------AILGSLDI 389
G + D+ ++ + D
Sbjct: 467 GTPVPDLENPVNIARLIRAFDP 488
>gi|288960804|ref|YP_003451144.1| nickel-dependent hydrogenase large subunit [Azospirillum sp. B510]
gi|288913112|dbj|BAI74600.1| nickel-dependent hydrogenase large subunit [Azospirillum sp. B510]
Length = 487
Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats.
Identities = 80/490 (16%), Positives = 135/490 (27%), Gaps = 101/490 (20%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M++ +R + GP + G L + LE+ G V L RG E+++E + +
Sbjct: 1 MNEAPNRRLIV--GPFN-RVEGDLEIRLEISGARV-SAAYVNAPLFRGFERILEGRDPMD 56
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+ R+ + ++Q HA ALA+ +G+EIP G L L + + HL +
Sbjct: 57 ALVVAPRICGICSVSQSHAAALALAGAMGVEIPRNGLLATNLMTATETVADHLTHFHLFF 116
Query: 121 MDVGALTPPLW---------------------GFEEREKLMVFYERASGSRMHAAYFRPG 159
M A R L G H +PG
Sbjct: 117 MPDFARPAYRARPWFDRAEARLKAGQGSAVRGATAARAALFHVLGILGGKWPHTLTLQPG 176
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALNDISD-------LLTGNRIFKQRNVNIGTVKLE-- 210
GV + I + F L D L +R G
Sbjct: 177 GVTRAIDGRDRVRLLATIRGFRRFLEDSLFGAPLARVLALAEPEELERWRLSGPAGDFRL 236
Query: 211 ----------------------DAWGWGFSGVMIRGSGAAWDLRK--------------- 233
G G + G D R
Sbjct: 237 FLEIAEDLDLAHLGRAYGRFLSHGAYAGPEGGHLYRRGTFADGRDAPFDPDLVAEHHRFS 296
Query: 234 -----SQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL------G 282
+P+ ++ + + G + + E+ I RQ VN
Sbjct: 297 RMAGQDRPHPPFAGSTVPDGLDEIGYSWCKAPRLAGLPYETGAIARQLVNGDPLIRALVA 356
Query: 283 KNKVGPVSASDPKIVPPKR--ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEF 340
++ S +++ R M+ + ++ E EA +G
Sbjct: 357 RDGGSVRSRVVARLLELARTTDAMEGWLRAVEPAAPWCVSAEVPDHAEAVGLTEAARGAL 416
Query: 341 GVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLAD-------VSAIL 384
G +L + +I AP + +E G + + V I+
Sbjct: 417 GHWLKL-ERGRIAGYQIIAPTTWNFSPRDLHDVPGPLEQALVGAPVQEGEPTPLSVQHIV 475
Query: 385 GSLDIVFGEV 394
S D
Sbjct: 476 RSFDPCMVCT 485
>gi|83312495|ref|YP_422759.1| NAD-reducing hydrogenase moiety large subunit [Magnetospirillum
magneticum AMB-1]
gi|82947336|dbj|BAE52200.1| NAD-reducing hydrogenase hydrogenase moiety large subunit
[Magnetospirillum magneticum AMB-1]
Length = 496
Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats.
Identities = 70/439 (15%), Positives = 128/439 (29%), Gaps = 67/439 (15%)
Query: 20 AHGVLRLILELDGEI-VERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD V +V HI + RG EK IE + + + RL + P++
Sbjct: 27 VEGHGKVTILLDDNNQVHQVRLHI-VEFRGFEKFIEGRPYWEVPVLVQRLCGICPVSHHL 85
Query: 79 AYALAVEKL-LGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV-------------- 123
A + A++ + G + + IR L + SH L+ +
Sbjct: 86 AASKAMDMIVNGGILTPTAEKIRRLMHYGQMLQSHALHFFHLSSPDLLFGFDSDVAKRNI 145
Query: 124 -----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
G R+ SG R+H PGGV++ + E + + D
Sbjct: 146 VGVAAANPDVAKMGVLLRKFGQEVIRVTSGKRVHGTGSVPGGVNKSLTAEERDYLLKDSD 205
Query: 179 SFPSALNDISDLLTG-NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSG----------A 227
+ D ++ G +R G V G + G
Sbjct: 206 QMIAWSRDAVRIIKGLHRSNPALYDAFGAVPSTMMSLVDDKGALDFYHGALRARDKDGEV 265
Query: 228 AWDLRKSQPY--------ECYSELDFDIPI-------GKHGDCYDRYLVRMMEM-RESVK 271
+D Q Y + +S + F R ++ +
Sbjct: 266 IFDQVSYQGYNTLLTEGVKSWSYMKFPYITTLGEEKGWYKVGPLARIQNCDSIPTPQAEE 325
Query: 272 IIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM---KRSMESLIHHFKLYTEGYHVPVGE 328
+ V K G + +++ A ++ I L EG GE
Sbjct: 326 ERVEFVAHGGAKPMHGSLGFHWARMIEMLCAAETIKDLLLDPDIMGADLMAEG--PRRGE 383
Query: 329 VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK--------GHQLAD- 379
+EAP+G + D + + + AM + GH++ +
Sbjct: 384 GIGVIEAPRGTLFHHYRVDDNDLVTYANLIVSTTNNNTAMNVAVRDVAKNYLQGHEITEG 443
Query: 380 ----VSAILGSLDIVFGEV 394
+ + D
Sbjct: 444 LLNHIEVAIRCFDPCLSCA 462
>gi|52842675|ref|YP_096474.1| cytochrome c3 hydrogenase alpha chain [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
gi|52629786|gb|AAU28527.1| cytochrome c3 hydrogenase alpha chain [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
Length = 430
Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats.
Identities = 55/430 (12%), Positives = 121/430 (28%), Gaps = 41/430 (9%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ +IN P G L L + +E + I R EK +E +++ + + +
Sbjct: 2 GKDISINV-PILARVEGEGALELCIRDSKIETLKLKIYEPPRLFEKFLEGRSYNEVLDFV 60
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG- 124
R+ + P+ + + A+E+ + + +R L+ + SH L+V A+
Sbjct: 61 ARICGICPVAYQMSATQAIEQCFNLSPTPWVRDMRRLFYCGEWLESHSLHVYFLALPDFL 120
Query: 125 -----------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDI 173
G + + G +H GG ++ ++ I
Sbjct: 121 GFQSAPEMARKYPEEVKCGLRIQAFGNDLIKLLGGRSVHPVGACVGGFYKAPSHPQIKLI 180
Query: 174 GCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRK 233
S + L + + G ++ G +
Sbjct: 181 LDKAKERISDCEALIHWLASLSLPDNSHDFTSVSLYHPTEYPMNEGRIVSDRGLNITKEE 240
Query: 234 SQPYECYSELDFDIPIG-------KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKV 286
Y +D+ + R + + ++ Q +N +
Sbjct: 241 FDAYFKEHHVDYSNALHCLLQNKPYLVGPLARINNCFGHLPAPIHLLLQSLNIQFPSRNM 300
Query: 287 GPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLIS 346
+ + + R +E + GE EAP+G + +
Sbjct: 301 CHSIIARAVEMYYCVLEAIRILEQYD-LPEQSRPEIKPQAGEGAGCTEAPRGMLWQHYVF 359
Query: 347 DGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLA-------DVSA-----ILGSLDIVFGE- 393
D + + +I P + +E K + + I+ + D
Sbjct: 360 DETGQVLQARIVPPTSQNQARIEEDLKHSLIQFGLNQEEEAIRYFSEMIIRNYDPCISCS 419
Query: 394 -------VDR 396
+DR
Sbjct: 420 THFLNLKIDR 429
>gi|296131884|ref|YP_003639131.1| nickel-dependent hydrogenase large subunit [Thermincola sp. JR]
gi|296030462|gb|ADG81230.1| nickel-dependent hydrogenase large subunit [Thermincola potens JR]
Length = 468
Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats.
Identities = 59/438 (13%), Positives = 110/438 (25%), Gaps = 72/438 (16%)
Query: 26 LILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVE 85
+ + +D + G+ RG E ++ + A R+ + A +LA+E
Sbjct: 19 IEITVDNGKIIDAK-SSGIYFRGLELILIGRDPRDAAYLTQRICGICSSVHALAASLALE 77
Query: 86 KLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA------------------------- 120
L IE+P G L+R L + +H+ +
Sbjct: 78 DALDIEVPPNGILMRNLTFGADLLQNHIRHFYLLGIADWVEGPDFPPFVPRYRRDFRLSK 137
Query: 121 -MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
+ + FE K G H PGG +++
Sbjct: 138 KDNERIFKHYMEHFEYARKCHEMVTLVGGKVPHQHGIVPGGHTVRPTMDMIYKFSSMLHE 197
Query: 180 FPSA-----LNDISDLLTGNRIFKQRNVNI--------GTVKLEDAWGWGFSGVMIRGSG 226
+ D+ + + + V + + G++ RG
Sbjct: 198 VSEFISNKLIPDMETIAETYSDYYKLGVGVKNLMAFGNFQIPKMRDKWVVPFGIVRRGKI 257
Query: 227 AAWD------------LRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIR 274
D R +P + + E E +
Sbjct: 258 EPVDLTKIKEYVTFSWYRDKEPTHPDRGSTVPEADKNAAYSWCKAPRYEDEPVEVGPLAH 317
Query: 275 QCVNRLLGKNKVGPVSASDPKIVPPKRAD-MKRSMESLIHHFKLYTEGYHVPVGE--VYA 331
+ + A+ MK +E L +Y Y +P GE
Sbjct: 318 MWMMGEYRHGISTMDRLMARYLELKIVAELMKGWLEELNPDLPVYQP-YEIPGGEHIGVG 376
Query: 332 AVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLAD--- 379
A +G G ++ + +I P + +E G + D
Sbjct: 377 LTGAMRGALGHWVRV-ENKRISHYQIITPSAWNCSPRDGTGTYGPIEQALIGTPVEDIHQ 435
Query: 380 ---VSAILGSLDIVFGEV 394
V I + D
Sbjct: 436 PIEVGRIARAFDPCLACA 453
>gi|121533906|ref|ZP_01665732.1| nickel-dependent hydrogenase, large subunit [Thermosinus
carboxydivorans Nor1]
gi|121307417|gb|EAX48333.1| nickel-dependent hydrogenase, large subunit [Thermosinus
carboxydivorans Nor1]
Length = 488
Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats.
Identities = 54/444 (12%), Positives = 108/444 (24%), Gaps = 72/444 (16%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGL-LHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
H +R+ +++ G V IG L RG E ++ + A + R+ +
Sbjct: 12 IHEPIRVEVDVQGGRVVDAW--IGACLFRGVELMLTGRDVRDAPLFVQRICGICSSAHAV 69
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA------------- 125
A A A+ ++ GQ + L + +HL + +
Sbjct: 70 AAAQALASACRVQPTPAGQYLINLLMAADFLQNHLRHFYLLVLPDYVTGPDSAPFFPRTK 129
Query: 126 -------------LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVED 172
+ + H P GV + E +
Sbjct: 130 GDFRLPKKLNDELFGHVRPALDLAARAHEMMALFGAKAPHQQTIMPTGVTERANAERLMA 189
Query: 173 IGCWCDSFPSALN--DISDLLTGNRIFKQRN---VNIGTVKLEDAWGWGFSGVMIRGSG- 226
G + ++D+LT ++ G + +G G
Sbjct: 190 YGAILQEIKEWVEKVYLADVLTIAEYYQDYFTIGRGYGHFLSYGGFPEPGTGQPAFPVGL 249
Query: 227 --------------------AAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEM 266
W + P + +
Sbjct: 250 VENGGLPQPLDLTRITEHIHHGWYQDDQESRHPIEGRTAAAPDKSAAYSWCKAPRYGRLP 309
Query: 267 RESVKIIRQCVNRLLGKNKVGPVS-ASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP 325
E+ + R ++ + + + + + + P
Sbjct: 310 AETGPLARAWISGEYRRGISVMDRLIARAREALKICRLAQEWLARIAPGAPTLAPYTLPP 369
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQ 376
GE +EA +G G +L K +I P + +E G
Sbjct: 370 RGEGVGLLEAMRGALGHWLRF-EEGKISHYQIVTPTAWNFSPRDNLGQRGPVEEALIGTP 428
Query: 377 LA------DVSAILGSLDIVFGEV 394
+A +V ++ S D F
Sbjct: 429 IAAPESLIEVGRVIRSFDPCFTCA 452
>gi|148360080|ref|YP_001251287.1| cytochrome c3 hydrogenase subnit alpha [Legionella pneumophila str.
Corby]
gi|296108099|ref|YP_003619800.1| hydA cytochrome c3 hydrogenase alpha chain [Legionella pneumophila
2300/99 Alcoy]
gi|148281853|gb|ABQ55941.1| cytochrome c3 hydrogenase alpha chain [Legionella pneumophila str.
Corby]
gi|295650001|gb|ADG25848.1| hydA cytochrome c3 hydrogenase alpha chain [Legionella pneumophila
2300/99 Alcoy]
Length = 430
Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats.
Identities = 54/430 (12%), Positives = 121/430 (28%), Gaps = 41/430 (9%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ +IN P G L L + +E + I R EK +E +++ + + +
Sbjct: 2 GKDISINV-PILARVEGEGALELCIRDSKIETLKLKIYEPPRLFEKFLEGRSYNEVLDFV 60
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG- 124
R+ + P+ + + A+E+ + + +R L+ + SH L+V A+
Sbjct: 61 ARICGICPVAYQMSATQAIEQCFNLSPTPWVRDMRRLFYCGEWLESHSLHVYFLALPDFL 120
Query: 125 -----------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDI 173
G + + G +H GG ++ ++ I
Sbjct: 121 GFQSAPEMARKYPEEVKCGLRIQAFGNDLIKLLGGRSVHPVGACVGGFYKAPSHPQIKLI 180
Query: 174 GCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRK 233
S + L + + G ++ G +
Sbjct: 181 LEKAKERISDCEALIHWLASLSLPDNSHDFTSVSLYHPTEYPMNEGRIVSDRGLNITKEE 240
Query: 234 SQPYECYSELDFDIPIG-------KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKV 286
Y +D+ + R + + ++ Q +N +
Sbjct: 241 FDAYFKEHHVDYSNALHCLLQNKPYLVGPLARINNCFGHLPAPIHLLLQSLNLQFPSRNM 300
Query: 287 GPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLIS 346
+ + + R +E + GE EAP+G + +
Sbjct: 301 CHSIIARAVEMYYCVLEAIRILEQYD-LPEQSRPEIKPQAGEGAGCTEAPRGMLWQHYVF 359
Query: 347 DGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLA-------DVSA-----ILGSLDIVFGE- 393
D + + +I P + +E + + + I+ + D
Sbjct: 360 DETGQVLQARIVPPTSQNQARIEEDLEHSLIQFGLNQEEEAIRYFSEMIIRNYDPCISCS 419
Query: 394 -------VDR 396
+DR
Sbjct: 420 THFLNLKIDR 429
>gi|38637689|ref|NP_942663.1| regulatory [NiFe] hydrogenase large subunit [Ralstonia eutropha
H16]
gi|1773360|gb|AAB49365.1| [NiFe] hydrogenase-like protein large subunit [Ralstonia eutropha
H16]
gi|32527027|gb|AAP85777.1| regulatory [NiFe] hydrogenase large subunit [Ralstonia eutropha
H16]
Length = 485
Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats.
Identities = 71/482 (14%), Positives = 131/482 (27%), Gaps = 104/482 (21%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
GP + G L + LE+ V + ++RG E+++ + L A+ Y R+ +
Sbjct: 6 VGPFN-RVEGDLEVNLEVASGRVCSARVNA-TMYRGLEQILLHRHPLDALVYAPRVCGIC 63
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------- 124
++Q A + A+ L G+ +P G L L + HL + M
Sbjct: 64 SVSQSVAASRALADLAGVTVPANGMLAMNLMLATENLADHLTHFYLFFMPDFTREIYAGR 123
Query: 125 -------------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
R++ G H +PGG + I
Sbjct: 124 PWHTDATARFSPTHGKHHRLAIAARQRWFTLMGTLGGKWPHTESVQPGGSSRAIDAAERV 183
Query: 172 DIGCWCDSFPSALND------ISDLLTGNRIFKQRNVN---------------------- 203
+ F L + D++ + +
Sbjct: 184 RLLGRVREFRCFLEQTLYAAPLEDVVALDSEVALWRWHAQAPQAGDLRCFLTIAQDAALD 243
Query: 204 -----------IGTVKLEDAWGWGFSGVMIRGSGA---------------AWDLRKSQPY 237
G + GV G AW + +
Sbjct: 244 QMGPGPGTYLSYGAYPQPEGGFCFAQGVWRSAQGRLDALDLAAISEDATSAWLVDQGGAR 303
Query: 238 ECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQC------VNRLLGKNKVGPVSA 291
+ L P +++ + E+ I RQ V + + +
Sbjct: 304 HPANGLTAPAPDKVGAYTWNKAPRLAGAVLETGAIARQLAGAQPLVRDAVARCGATVYTR 363
Query: 292 SDPKIVPPKRAD--MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGG 349
++V R M+ ++SL + + G EA +G G + +S
Sbjct: 364 VLARLVELARVVPLMEDWLQSLEIGAPYWASAHLPDQGAGVGLTEAARGSLGHW-VSVRD 422
Query: 350 NKPYRCKIRAPGYAHLQ---------AMEFLCKG--------HQLADVSAILGSLDIVFG 392
+ +I AP + A+E +G +A V I+ S D
Sbjct: 423 GRIDNYQIVAPTSWNFSPRDIAGQPGAVEKALEGAPVLQGETTPVA-VQHIVRSFDPCMV 481
Query: 393 EV 394
Sbjct: 482 CT 483
>gi|320354170|ref|YP_004195509.1| NAD(P)-dependent nickel-iron dehydrogenase catalytic subunit
[Desulfobulbus propionicus DSM 2032]
gi|320122672|gb|ADW18218.1| NAD(P)-dependent nickel-iron dehydrogenase catalytic subunit
[Desulfobulbus propionicus DSM 2032]
Length = 475
Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats.
Identities = 64/439 (14%), Positives = 119/439 (27%), Gaps = 70/439 (15%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G R+ L LD V+ + RG EK +E + F + R + P++ E
Sbjct: 13 IEGHARIQLFLDDAGQVQNARFQV-TQFRGFEKFVEGRPFFEMPSLTARTCGICPISHEL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A A A ++LL + IP + +R + + I SH L+ +
Sbjct: 72 ASAKACDQLLAVAIPETAKQLRRVLNLGQIIQSHALSYFYLSAPDFLLGMDHPPASRNFF 131
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ ER +G R+H A+ PGGV + +++ +
Sbjct: 132 GLAAAHPQFARDGIRLRQFGQQVIERLAGRRIHPAWVVPGGVRSPLDERARDELLREIPT 191
Query: 180 FPSALNDISDLLTGN-RIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSG------------ 226
+ D + ++ G + G
Sbjct: 192 VKTLALDHLHRFKQSLEQHEEYIQIFAHFPSLFLGLTDRDGNLEHYDGGMRIIDPTGALV 251
Query: 227 -----------------AAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRES 269
W K Y+ + +G +
Sbjct: 252 VDHLAPSRYREVIDEAVEPWTFLKFPYYKPQGYPEGMYRVGPLARLNLAARCGTELADQE 311
Query: 270 VKIIRQCVNRLLGKNKVGPVSASDPKIVP--PKRADMKRSMESLIHHFKLYTEGYHVPVG 327
+ R V+ L +G A +++ +++ + V
Sbjct: 312 LLQFRSLVDGL----HLGSFYAHYARLIEVVYAIEMIEKLLSDRAILDSTVRAVAGVNKC 367
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH--------LQAMEFLCKG----- 374
E EAP+G + + + + LQA G
Sbjct: 368 EGIGVTEAPRGTLIHHYRVNDDGLLEWANLIIATGHNNLAMNRGILQAARRYLDGVTPRE 427
Query: 375 HQLADVSAILGSLDIVFGE 393
L + A++ + D
Sbjct: 428 GLLNRIEAVIRAFDPCLAC 446
>gi|89893541|ref|YP_517028.1| Hup-type Ni,Fe-hydrogenase large subunit [Desulfitobacterium
hafniense Y51]
gi|89332989|dbj|BAE82584.1| Hup-type Ni,Fe-hydrogenase large subunit [Desulfitobacterium
hafniense Y51]
Length = 478
Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats.
Identities = 56/439 (12%), Positives = 119/439 (27%), Gaps = 68/439 (15%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
H + + L+ +++ L+RG E+++E + Y R+ + A
Sbjct: 26 IHNPMLVEAYLENGVIQDAFISD-TLYRGFEQILEGRPAFDMPYYTQRICGICSSVHAVA 84
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL------------- 126
A AVE+ LG+ +P G + R L + +H+ + +M
Sbjct: 85 AAFAVEQALGMTVPSNGLIQRNLIMGSDFLQNHIRHFYLMSMPDYFKGPDIPPFTPHLEG 144
Query: 127 -------------TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDI 173
E + G H PGG + + +
Sbjct: 145 DIRFNTEENQRMTEHYFKAVEISRDAHAAFGVFGGKAPHGHGIVPGGCTMHVDADKINRF 204
Query: 174 GCWCDSFPS-----ALNDISDLLTGNRIFKQRNVN------IGTVKLEDAWGWGFSGVMI 222
+ + D+ L+ + +G D GV++
Sbjct: 205 RGYLIQILEFINNFMIPDMEFLVERYPEYVHLGKGNGNFLSVGGFTQPDGGTLFPHGVVL 264
Query: 223 RGSGAAWDLR------------KSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESV 270
+D R + P + G + + E
Sbjct: 265 EDKHQPFDDRLILEEVTTAWYKPTPPAHPWQGTTEPDKNQPQGYTWVKAPRYQGHALEVG 324
Query: 271 KIIRQCVNRLLGKNKVGPVSASDPKIVPPKR--ADMKRSMESLIHHFKLYTEGYHVPVGE 328
+ R + + G + +++ K+ +E L+ + G
Sbjct: 325 PLARAVIAK-EKIIGYGTLGRHWSRVMETKKIAEAAMIWLERLVPGAETLNTKVQQESGM 383
Query: 329 VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFL---------CKGHQL-- 377
VEA +G G ++ + +I P + + + +G +
Sbjct: 384 GIGYVEAMRGTLGHWIKI-EKGRVKHYQIITPSTWNFSSRDEAGNCSVGELSIRGLTIKH 442
Query: 378 ---ADVSAILGSLDIVFGE 393
+ ++ S D F
Sbjct: 443 PELKEAGRVIRSFDPCFSC 461
>gi|257058010|ref|YP_003135898.1| nickel-dependent hydrogenase large subunit [Cyanothece sp. PCC
8802]
gi|256588176|gb|ACU99062.1| nickel-dependent hydrogenase large subunit [Cyanothece sp. PCC
8802]
Length = 474
Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats.
Identities = 71/441 (16%), Positives = 118/441 (26%), Gaps = 74/441 (16%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD V+ H+ + +RG EK E + + R+ + P++
Sbjct: 13 IEGHAKISIFLDDSGSVQDARFHV-VEYRGFEKFCEGRPMWEMAGITARICGICPVSHLL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A A +K+L + IP + +R L + SH L+ +
Sbjct: 72 ASAKTGDKILAVAIPPAAEKLRRLMNLAQITQSHALSFFHLSSPDFLLGWDSDPAKRNVF 131
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ E ++HAA+ PGGV + E + I
Sbjct: 132 GLIEANPELARSGIRLRQFGQQIIELLGAKKIHAAWTVPGGVRSPLSEEGRQWIRDRLPE 191
Query: 180 FPSALNDISDLLTG-NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA----------- 227
+ LN +L F G G G G
Sbjct: 192 SRATLNIALNLFKDLLDQFSTEVTTFGKFPSLFMGLVGEDGSWEHYGGHIRFTDSQGNIV 251
Query: 228 ------------------AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRES 269
W K Y+ D +G E
Sbjct: 252 ADHLNEDNYKDFIGESVEKWTYLKFPYYKPLGYPDGIYRVGPLARLNICTHFGTPEADRE 311
Query: 270 VKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVG-- 327
++ RQ V S + +E LI + ++ G
Sbjct: 312 LQEYRQ------RAGGVATSSFFYHYARLLEILASLEHIERLIDDPDIVSKHTRAKAGIN 365
Query: 328 --EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFL--------CKGHQL 377
E EAP+G + D + + + AM +G+QL
Sbjct: 366 ALEGIGVSEAPRGTLFHHYQVDENGLIKKVNLIIATGNNNLAMNQTVAQIAKHYIQGNQL 425
Query: 378 AD-----VSAILGSLDIVFGE 393
+ V A + D
Sbjct: 426 TEGMLNRVEAGIRCYDPCLSC 446
>gi|91975641|ref|YP_568300.1| nickel-dependent hydrogenase, large subunit [Rhodopseudomonas
palustris BisB5]
gi|91682097|gb|ABE38399.1| nickel-dependent hydrogenase, large subunit [Rhodopseudomonas
palustris BisB5]
Length = 481
Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats.
Identities = 72/479 (15%), Positives = 125/479 (26%), Gaps = 99/479 (20%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
+ GP + G L + L++DG +V + L+RG E+++ + L A+ R+
Sbjct: 5 VTVGPFN-RVEGDLEVRLDIDGGVVTSAEVTAP-LYRGFEQILRGRPALDALTLAPRICG 62
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP- 129
+ ++Q A A A+ + G G L L HL + M A
Sbjct: 63 ICSVSQSLAAAAALRAVDGFRAADNGVLAANLAHAAENAADHLTHFYLFFMPDFARDAYA 122
Query: 130 --------------------LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL 169
R +L+ +G H+ F+PGG + I
Sbjct: 123 ARPWHPDIATRFKAVQGSAAQQMLPARARLLQIMGLLAGKWPHSLAFQPGGTTRAIDLGE 182
Query: 170 VEDIGCWCDSFPSALNDISD-------LLTGNRIFKQRNVN------------------- 203
+ L I L + +R +
Sbjct: 183 RVQLLSIIGDLRDVLERIVFADSLDNVLALDSAAALERWRDGRGGDFARFLALADDLALD 242
Query: 204 -IGTVKLEDAWGWGFSG----------------------VMIRGSGAAWDLRKSQPYECY 240
+G + L + G A +
Sbjct: 243 RLGRIALPLMSYGAYHGGDAPLFAAGVFDPATAQAHPLDPNDISEDVARAWMRDTSLRPS 302
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR------LLGKNKVGPVSASDP 294
+ G + + E + RQ V+ LL +
Sbjct: 303 EAETDPDADKQAGYSWCKAPRLAGRPVEVGALARQAVDGDPLIRDLLARQGPNVSVRVIA 362
Query: 295 KIVPPKR--ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLI-SDGGNK 351
+++ R A M L G +EA +G G ++ SD
Sbjct: 363 RLIETARLAAAMHDWARRLDLRAPFLERAERRGEGAGIGLIEAARGSLGHWIELSDDN-- 420
Query: 352 PYRCKIRAPGYAHLQ---------AMEFLCKGHQLAD-------VSAILGSLDIVFGEV 394
R +I AP + +E G + D + I+ S D
Sbjct: 421 IRRYQIIAPTTWNFSPRDRDGVAGPLEQALAGTAVGDEGARSVAIQHIVRSFDPCMVCT 479
>gi|187934620|ref|YP_001886200.1| [Ni/Fe] hydrogenase, large subunit [Clostridium botulinum B str.
Eklund 17B]
gi|187722773|gb|ACD23994.1| [Ni/Fe] hydrogenase, large subunit [Clostridium botulinum B str.
Eklund 17B]
Length = 471
Score = 186 bits (473), Expect = 4e-45, Method: Composition-based stats.
Identities = 60/451 (13%), Positives = 114/451 (25%), Gaps = 78/451 (17%)
Query: 22 GVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYA 81
G+L++ ++++ + G RG EK+ + + L + R+ + + A
Sbjct: 14 GLLKIEVDVENNKIVDAK-STGSQFRGFEKMFQGRPPLDIIRLAPRICGICSTSHAIAAT 72
Query: 82 LAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA---------------- 125
LA+E L I G++IR + + +HL A
Sbjct: 73 LALENALNITPDFNGKVIRDIAHGFEFLQNHLRTTYFFAFPDFVKITASNPLYKDGTDKE 132
Query: 126 -------------LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQ--DIPPEL- 169
L + + +G H GG+ D+P +
Sbjct: 133 LDYRLPEDITKKINEDYLEAVKYSRECHRAIAVLAGKAPHCHGIWVGGISTYIDVPEKES 192
Query: 170 --------VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGW------ 215
E I + + ++ G A
Sbjct: 193 VKYTITVVKEFIENKLLEDVKIIAQYYNDYFNMGKGYGNLMDFGLYSDYKAPIKYTEASA 252
Query: 216 GFSGVMIRGSGAAWDLRKSQPY---------ECYSELDFDIPIGKHGDCYDRYLVRMMEM 266
+G Y S P + +
Sbjct: 253 MINGKKENIDVNNITENVKYSYLDIPGGMVMPGVSSTPEPNPYKQDAYSWVDAARYKNYS 312
Query: 267 RESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV 326
E + RQ +N + K + + L+ + E + +P
Sbjct: 313 MEGGPLARQILNGYYENKISAMDRILARVLESVKICESIIGLIDLMKLGQAVQEEWQIPS 372
Query: 327 GE-VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQ 376
+ AP+G G +L S + + P +L +E G +
Sbjct: 373 KVNGIGLIGAPRGALGHWL-SIENKQVSNYTLIPPSAWNLSPTDSNNIKGPVEAALIGTE 431
Query: 377 LAD------VSAILGSLDIVFGEV-----DR 396
+ D + I+ S D DR
Sbjct: 432 INDMKNPVEIGRIVRSFDPCSNCAAHVTSDR 462
>gi|116332384|ref|YP_802102.1| metal (Ni/Fe) hydrogenase, large subunit [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
gi|116126073|gb|ABJ77344.1| Metal (Ni/Fe) hydrogenase, large subunit [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
Length = 469
Score = 186 bits (473), Expect = 4e-45, Method: Composition-based stats.
Identities = 74/388 (19%), Positives = 139/388 (35%), Gaps = 31/388 (7%)
Query: 12 NFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYV 71
GP H + GE + +D +G RG LI+ K + PY + +
Sbjct: 108 AVGPIHAGVIEPGHFRFIVKGEEIRNLDIRLGFQKRGLIDLIKGKGSKDSFPYAEAISGD 167
Query: 72 APMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLW 131
+ + A++ E+ I +P R+++ E+ RI +H+ ++ A DVG
Sbjct: 168 STIAYAIAFSRIFEEAQKIAVPQELDFARLVFLELERIATHIGDMGAIAGDVGYYPLQGV 227
Query: 132 GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDI--PPELVEDIGCWCDSFPSALNDISD 189
+R + E +G+R PG + E + ++ S + + +
Sbjct: 228 CSLQRGVPLGVMEALTGNRFGRGALSPGKIVLRKGLNREKLNELAERIRSVTADVVAHFE 287
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQP-YECYSELDFD-I 247
++R + G ++ + GF G++ + +G + DLR + Y S + +
Sbjct: 288 RAANVSTNRERLQSCGIIRQKQVRHLGFIGMVEKCTGLSRDLRSLEKSYMFSSPISLELN 347
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
GD + R+ +R E++ S K + + +L
Sbjct: 348 RDHMKGDAWARFYLRCEELKNSGKWLIDAIPKLEA------------------------- 382
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
+ F V G Y+AVE +G V L D IR + A
Sbjct: 383 --AFSLKFGKVPSKSSVKKGTYYSAVEGWRGPVLVSLDLDATGSIENAYIREVSVPNWHA 440
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVD 395
+E +G + D S ++ + VD
Sbjct: 441 LELAVRGEYIGDFPLNNKSFNLSYVGVD 468
>gi|218780124|ref|YP_002431442.1| nickel-dependent hydrogenase large subunit [Desulfatibacillum
alkenivorans AK-01]
gi|218761508|gb|ACL03974.1| Regulatory H2-sensing hydrogenase, HupV [Desulfatibacillum
alkenivorans AK-01]
Length = 506
Score = 186 bits (473), Expect = 4e-45, Method: Composition-based stats.
Identities = 62/485 (12%), Positives = 132/485 (27%), Gaps = 112/485 (23%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L++ LE DG + G ++RG E +++ + L + R+ + + +A
Sbjct: 14 VEGDLKVHLEYDGNKIYDA-FSAGTMYRGFENIMKERGPLDGLVITPRICGICTTSHLYA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWG------- 132
A A++ + +P +R + ++ + + + T Q M
Sbjct: 73 AAKALDMISQAVVPDNATRVRNITLIAEQLQNDVRHHTMQFMVDATNPVYENAPFYEEAI 132
Query: 133 --------------FEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
+ ++++ G H+++ PGGV +
Sbjct: 133 ERYTPIRGSSIVSAIQSTKRVLEIVSILGGQWPHSSFMVPGGVVSVPGANDIMQCKYVLR 192
Query: 179 SFPSA------------------LNDISDLLTGNRIFK---------------------- 198
F S D+ D L +
Sbjct: 193 RFKSWYEKQILGCTCEEWNQVQSARDLEDWLESSPSRYSSDLGFYLRFGREAGLDRLGKG 252
Query: 199 ----------QRNVNIGTVKLEDAWGWGFSGVMIRGSG-------------AAWDLRKSQ 235
G L + +G + G +W
Sbjct: 253 TENFISYGFLDMPRKTGVKSLGSTGYYFPAGFVSSGMVRQVNQHEIKEDISHSWFTNDET 312
Query: 236 PYECYSELDFDIPIGKHG--DCYDRYLVRMMEMRESVKIIRQ------CVNRLLGKNKVG 287
Y + G G + + E+ + + ++ ++
Sbjct: 313 ELHPYEGVTIPYATGSEGRRYSWAKAPRYDGHPAETGPLAQMMALQHPLFTNMVNQSAPS 372
Query: 288 PVSASDPKIVPPKRAD--MKRSMESL-IHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
S +IV P M + ++ + +T + G+ + VEAP+G G ++
Sbjct: 373 VFSRQLARIVRPALTISVMDQWLDEIAETDEPFFTPYNDIKNGQGHGMVEAPRGSLGHWV 432
Query: 345 ISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQL--ADVS----AILGSLDI 389
I + R ++ +P + L E G + + I+ S D
Sbjct: 433 II-EDGRIKRYQVISPTTWNASPRDANGQLGPWERALAGTAIKNPNAPIEVDHIVRSFDP 491
Query: 390 VFGEV 394
Sbjct: 492 CLVCT 496
>gi|193214063|ref|YP_001995262.1| nickel-dependent hydrogenase large subunit [Chloroherpeton
thalassium ATCC 35110]
gi|193087540|gb|ACF12815.1| nickel-dependent hydrogenase large subunit [Chloroherpeton
thalassium ATCC 35110]
Length = 424
Score = 186 bits (472), Expect = 5e-45, Method: Composition-based stats.
Identities = 49/408 (12%), Positives = 109/408 (26%), Gaps = 35/408 (8%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G + +++ + + R E ++ + A R+ + + A
Sbjct: 15 VEGHGNIHVKVKDGKLVDAKWAVVETPRFFEAMVRGLSHDLAPVLTARICGICSIGHALA 74
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG------------ALT 127
AVE+ + ++IP + +R+L + SH+L+V
Sbjct: 75 SLRAVERAMDVQIPKTAKKLRLLAKHGETLQSHILHVFFLVAPDFYNVGSVIPIVAQHPD 134
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
+ + +G H GG+ + + + + + +
Sbjct: 135 VAGLAVRLKGLANDLCDLVAGRTTHPVSLAVGGLTKAPSKDDLAKMKIAIEERLPDMLAT 194
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA-----AWDLRKSQPYECYSE 242
DL ++ G +I G + ++ +S
Sbjct: 195 IDLFASLKMPAFVRETEFVSLKGVNEYPWIGGDLISTDGVVKPEDDYLAMTNEYVVDFST 254
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
F K R+ RL + ++ V
Sbjct: 255 SKFTKLSRDAFAAGALARFNNNHHFLHEKA-REAAERLGLRAVNHNPFMNNVAQVVESYH 313
Query: 303 DMKRSME----SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
M S+E L K Y G+ AVE P+G +D +
Sbjct: 314 VMLESIEMIQALLDSDLKDIRADYKPTAGKGVGAVEVPRGILYHCYETDDSGIIKKANCI 373
Query: 359 APGYAHLQAM---------EFLCKG---HQLADV-SAILGSLDIVFGE 393
P + + + + +G +++ + ++ + D
Sbjct: 374 IPTTQNNANIHYDLPELVNQEMARGKDENEIEKLCEMLVRTYDPCISC 421
>gi|329914777|ref|ZP_08276170.1| nickel-dependent hydrogenase, large subunit [Oxalobacteraceae
bacterium IMCC9480]
gi|327545049|gb|EGF30360.1| nickel-dependent hydrogenase, large subunit [Oxalobacteraceae
bacterium IMCC9480]
Length = 485
Score = 186 bits (472), Expect = 5e-45, Method: Composition-based stats.
Identities = 71/482 (14%), Positives = 134/482 (27%), Gaps = 104/482 (21%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
GP + G L + LE+ V+ + ++RG E+++ K + A+ Y R+ +
Sbjct: 6 VGPFN-RVEGDLEVQLEVVDGHVQSARVNAP-MYRGFEQILLGKPAMDALVYVPRICGIC 63
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP--- 129
++Q A A A+ LG+ GQL+ + + HL + M A
Sbjct: 64 SVSQSVAAARALADALGVTPAANGQLVTNVMLATENLADHLTHFYLFFMPDFARAAYAQQ 123
Query: 130 ------LWGFEERE------------KLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
F +E + G H +PGG + + P
Sbjct: 124 PWHAEVQRRFAAQEGAHARLALAARQRWFTLLGTLGGKWPHTHAIQPGGSSRAVDPGERI 183
Query: 172 DIGCWCDSFPSALND------ISDLLTGNRIFKQRNVN------------IGTVKLEDAW 213
+ F + L + + + R+ + T+ +
Sbjct: 184 RLLAKVREFRAFLEQTLFAAPLEQIAALDSEAALRHWHASAAPEQGDLRLFLTLAWQTGL 243
Query: 214 GWGFSGVMIRGSG------------------------------------AAWDLRKSQPY 237
G + S AW P
Sbjct: 244 DRMGPGPGLYMSNGSYPDANGLLFARGLWDAATGQVAPLDTIGITEDATHAWLADAGGPL 303
Query: 238 ECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL------GKNKVGPVSA 291
+ +++ + E+ + RQ V+ + +
Sbjct: 304 HPAHGMTLPDIDKPDAYTWNKAPRLAGRVLETGALARQLVDGHPLIRDAAARCGGTVYTR 363
Query: 292 SDPKIVPPKRA--DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGG 349
+++ M+R ++SL + G G+ EA +G G + +S
Sbjct: 364 VLARLLELALVVPAMERWIKSLQVDAPYFAAGPMADSGDGMGLTEAARGSLGHW-VSIRN 422
Query: 350 NKPYRCKIRAPGYAHLQ---------AMEFLCKG--------HQLADVSAILGSLDIVFG 392
K +I AP + A+E G +A V I+ S D
Sbjct: 423 GKLANYQIIAPTSWNFSPRDATGVPGALEAALVGAEVNPGEDTPVA-VQHIVRSFDPCMV 481
Query: 393 EV 394
Sbjct: 482 CT 483
>gi|134291360|ref|YP_001115129.1| nickel-dependent hydrogenase, large subunit [Burkholderia
vietnamiensis G4]
gi|134134549|gb|ABO58874.1| nickel-dependent hydrogenase, large subunit [Burkholderia
vietnamiensis G4]
Length = 485
Score = 186 bits (472), Expect = 5e-45, Method: Composition-based stats.
Identities = 66/482 (13%), Positives = 123/482 (25%), Gaps = 104/482 (21%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
GP + G L + +E+ V + + RG E+++ + L A+ Y R+ +
Sbjct: 6 IGPFN-RVEGDLEVRIEVVDGRVSDAHVNA-TMFRGFEQILLDRDPLDALVYVPRICGIC 63
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP--- 129
++Q A A A+ L G+ GQ+ L + HL + M
Sbjct: 64 SVSQGVAAARALADLAGVTPAPNGQIATNLMLAAENLADHLSHFYLFFMPDFVRPVYAAR 123
Query: 130 ------------------LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
R++ + G H +PGG + I
Sbjct: 124 AWHAEAVSRFTPYQGERHRASLAARQRWLRLMGTLGGKWPHTGSIQPGGSARAIDNAERI 183
Query: 172 DIGCWCDSFPSALNDI--------------------------------SDLLTGNRIFKQ 199
+ + F L ++ L + +
Sbjct: 184 RLLGFIGEFRQFLEEVLFDAPLEEIAQLDSEAALAAWRARGERRGDLRFFLTLADDLGLD 243
Query: 200 RNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQP----------------------Y 237
R + L G G RK
Sbjct: 244 RLGAGPDLYLSYGAYPQPDGAHAFRGGVWDAQRKQADALDLDAITEDATHAWLDDAGGAR 303
Query: 238 ECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL------GKNKVGPVSA 291
++ L +++ + E+ I RQ + + +
Sbjct: 304 HPFAGLTEPRADKPGAYTWNKAPRLNGAVLETGAIARQLADGHPLIADAVARCGGSVYTR 363
Query: 292 SDPKIVPPKRA--DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGG 349
+++ R M++ + +L G EA +G G +L
Sbjct: 364 VLARLLELARVVPMMEQWVRALAPGMPYCAAFALPDEGRAVGLNEAARGSLGHWLAVK-D 422
Query: 350 NKPYRCKIRAPGYAHLQ---------AMEFLCKG--------HQLADVSAILGSLDIVFG 392
+ +I AP + A+E G +A V I+ S D
Sbjct: 423 GRIANYQIIAPTSWNFSPRDAGGRPGALEAALIGAPVEPGETTPVA-VQHIVRSFDPCMV 481
Query: 393 EV 394
Sbjct: 482 CT 483
>gi|116326950|ref|YP_796670.1| metal (Ni/Fe) hydrogenase, large subunit [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
gi|116119694|gb|ABJ77737.1| Metal (Ni/Fe) hydrogenase, large subunit [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
Length = 469
Score = 186 bits (472), Expect = 6e-45, Method: Composition-based stats.
Identities = 74/388 (19%), Positives = 138/388 (35%), Gaps = 31/388 (7%)
Query: 12 NFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYV 71
GP H + GE + +D +G RG LI+ K + PY + +
Sbjct: 108 AVGPIHAGVIEPGHFRFIVKGEEIRNLDIRLGFQKRGLIDLIKGKGSKDSFPYAEAISGD 167
Query: 72 APMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLW 131
+ + A++ E+ I +P R++ E+ RI +H+ ++ A DVG
Sbjct: 168 STIAYAIAFSRIFEEAQKIAVPQELDFARLVLLELERIATHIGDMGAIAGDVGYYPLQGV 227
Query: 132 GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDI--PPELVEDIGCWCDSFPSALNDISD 189
+R + E +G+R PG + E + ++ S + + +
Sbjct: 228 CSLQRGVPLGVMEALTGNRFGRGALSPGKIVLRKGLNREKLNELAERIRSVTADVVAHFE 287
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQP-YECYSELDFD-I 247
++R + G ++ + GF G++ + +G + DLR + Y S + +
Sbjct: 288 RAANVSTNRERLQSCGIIRQKQVRHLGFIGMVEKCTGLSRDLRSLEKSYMFSSPISLELN 347
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
GD + R+ +R E++ S K + + +L
Sbjct: 348 RDHMKGDAWARFYLRCEELKNSGKWLIDAIPKLEA------------------------- 382
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
+ F V G Y+AVE +G V L D IR + A
Sbjct: 383 --AFSLKFGKVPSKSSVKKGTYYSAVEGWRGPVLVSLDLDATGSIENAYIREVSVPNWHA 440
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVD 395
+E +G + D S ++ + VD
Sbjct: 441 LELAVRGEYIGDFPLNNKSFNLSYVGVD 468
>gi|119489270|ref|ZP_01622077.1| hydrogenase large subunit [Lyngbya sp. PCC 8106]
gi|119454744|gb|EAW35889.1| hydrogenase large subunit [Lyngbya sp. PCC 8106]
Length = 476
Score = 186 bits (472), Expect = 6e-45, Method: Composition-based stats.
Identities = 64/442 (14%), Positives = 123/442 (27%), Gaps = 74/442 (16%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD VE H+ + RG EK E + + R+ + P++
Sbjct: 13 IEGHAKISVYLDDAGEVENARFHV-VEFRGFEKFCEGRPMFEMAGITARICGICPVSHLL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A A +K+L +++P G+ +R + + SH L+ +
Sbjct: 72 ASAKTGDKILAVQVPPAGEKLRRMMNLAQLTQSHALSFFHLSSPDFLIGWDSDPAKRNIF 131
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ E ++HAA+ PGGV + E I
Sbjct: 132 GLIASDPDLARGGIRLRQFGQTVIELLGAKKIHAAWAVPGGVRSPLSEEGRTWIRERLPE 191
Query: 180 FPSALNDISDLLTG--NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA---------- 227
+ + DL + F G +G G
Sbjct: 192 SKTTAENALDLFKNLLDSHFTDEVDAFGKFPSLFMSLVAENGNWEHYGGHLRFIDSDGII 251
Query: 228 -------------------AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRE 268
+W K Y+ + +G + E
Sbjct: 252 VADNLSEDDYQEFLGEAVESWSYLKFPYYKPLGYPNGMYRVGPLARLNVCDRIGT---PE 308
Query: 269 SVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVG- 327
+ + +R+ +R G+ +++ +E L++ + + G
Sbjct: 309 ADRELREFRDRAGGRVATSSFFYHYARLIEIIAC--LEEIERLVNDPDIVSSRVRANAGI 366
Query: 328 ---EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFL--------CKGHQ 376
E EAP+G + D + + + AM G
Sbjct: 367 NNLEGIGVSEAPRGTLFHHYNVDENGLIQKVNLIIATGQNNLAMNKTVTQIAKHYIHGQD 426
Query: 377 LAD-----VSAILGSLDIVFGE 393
+ + V A + + D
Sbjct: 427 IPEGLLNRVEAGIRAFDPCLSC 448
>gi|54298468|ref|YP_124837.1| hypothetical protein lpp2532 [Legionella pneumophila str. Paris]
gi|53752253|emb|CAH13685.1| hypothetical protein lpp2532 [Legionella pneumophila str. Paris]
Length = 430
Score = 186 bits (472), Expect = 6e-45, Method: Composition-based stats.
Identities = 54/421 (12%), Positives = 118/421 (28%), Gaps = 37/421 (8%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ +IN P G L L + +E + I R EK +E +++ + + +
Sbjct: 2 GKDISINV-PILARVEGEGALELCIRDSKIETLKLKIYEPPRLFEKFLEGRSYNEVLDFV 60
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG- 124
R+ + P+ + + A+E+ + + +R L+ + SH L+V A+
Sbjct: 61 ARICGICPVAYQMSATQAIEQCFNLSPTPWVRDMRRLFYCGEWLESHSLHVYFLALPDFL 120
Query: 125 -----------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDI 173
G + + G +H GG ++ ++ I
Sbjct: 121 GFQSAPEMARKYPEEVKCGLRIQAFGNDLIKLLGGRSVHPVGACVGGFYKAPSHPQIKLI 180
Query: 174 GCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRK 233
S + L + + G ++ G +
Sbjct: 181 LEKAKERISDCEALIHWLASLSLPDNSHDFTSVSLYHPTEYPMNEGRIVSDRGLNITKEE 240
Query: 234 SQPYECYSELDFDIPIG-------KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKV 286
Y +D+ + R + + ++ Q +N +
Sbjct: 241 FDAYFKEHHVDYSNALHCLLQNKPYLVGPLARINNCFGHLPAPIHLLLQSLN---IQFPS 297
Query: 287 GPVSASDPKIVPPKRADMKRSMESLI--HHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
+ S + S+ L + GE EAP+G +
Sbjct: 298 RNMCHSIIARAVEMYYCVLESIRILEQYDLPEQSRPEIKPQAGEGAGCTEAPRGMLWQHY 357
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLA-------DVSA-----ILGSLDIVFG 392
+ D + + +I P + +E K + + I+ + D
Sbjct: 358 VFDETGQVLQARIVPPTSQNQARIEEDLKHSLIQFGLNQEEEAIRYFSEMIIRNYDPCIS 417
Query: 393 E 393
Sbjct: 418 C 418
>gi|114763660|ref|ZP_01443054.1| hydrogenase large subunit [Pelagibaca bermudensis HTCC2601]
gi|114543661|gb|EAU46674.1| hydrogenase large subunit [Roseovarius sp. HTCC2601]
Length = 476
Score = 186 bits (472), Expect = 6e-45, Method: Composition-based stats.
Identities = 65/470 (13%), Positives = 124/470 (26%), Gaps = 91/470 (19%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
GP + G L + L++ V + L RG E +++ K A+ R+ +
Sbjct: 8 VGPFN-RVEGDLEIRLDVTDGRVSEARANSP-LFRGFEMMLQGKAPSDALTLTPRICGIC 65
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP--- 129
++Q A ALA+ G+ +P +G+L + + + H+ + M A
Sbjct: 66 SISQSAAAALALADAGGVTMPPQGRLAAAILHGVENLCDHISHFALFFMPDFARPVYAGR 125
Query: 130 ------------------LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
E R +L G H +PGGV +
Sbjct: 126 TWHDRAVARYTAQQGSAVRPLIEARAQLFHIVGLLGGKWPHTLAIQPGGVTRAPDARDRI 185
Query: 172 DIGCWCDSFPSALN--------DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG---- 219
I + L + L ++ + E + G G
Sbjct: 186 RIQTTLRAARRVLERELFGGSLEAFAALGSVSGYEGWAGGDVALFSEISADLGLDGIGVG 245
Query: 220 VMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHG-------------------------- 253
S A+ L + + D + G
Sbjct: 246 PKRYLSCGAYPLAEGRVTGAGVWEDGSVSAFDPGEIVEDVSHAWMLGEAAHPAQGATLPD 305
Query: 254 -------DCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA---- 302
+ + E + RQ ++ + + +I
Sbjct: 306 EDMAEPSYSWCKAPRLGGRTVEVGALARQVLDGHPLALALAGEGSVRARIAGRLLEIART 365
Query: 303 --DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
++ +L + G VEA +G G ++ + R +I AP
Sbjct: 366 VLWLEDWAAALDPGAVFMDPAPALREGSGVGLVEAARGALGHWITV-EKGRITRYQIVAP 424
Query: 361 GYAHLQ---------AMEFLCKGHQLAD-------VSAILGSLDIVFGEV 394
+ +E G + + V ++ S D
Sbjct: 425 TTWNFSPRDAGGVPGPVEAALVGAPVGEGETTPVMVQHVVRSFDPCMVCT 474
>gi|307611325|emb|CBX00986.1| hypothetical protein LPW_26881 [Legionella pneumophila 130b]
Length = 430
Score = 186 bits (472), Expect = 6e-45, Method: Composition-based stats.
Identities = 54/435 (12%), Positives = 121/435 (27%), Gaps = 51/435 (11%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ +IN P G L L + ++ + I R EK +E +++ + + +
Sbjct: 2 GKDISINV-PILARVEGEGALELCIRDSKIDTLKLKIYEPPRLFEKFLEGRSYNEVLDFV 60
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG- 124
R+ + P+ + + A+E+ + + +R L+ + SH L+V A+
Sbjct: 61 ARICGICPVAYQMSATQAIEQCFNLSPTPWVRDMRRLFYCGEWLESHSLHVYFLALPDFL 120
Query: 125 -----------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDI 173
G + + G +H GG ++ ++ I
Sbjct: 121 GFQSAPEMARKYPEEVKCGLRIQAFGNDLIKLLGGRSVHPVGACVGGFYKAPSHSQIKLI 180
Query: 174 GCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRK 233
S + L + + G ++ G +
Sbjct: 181 LDKAKDRVSDCEALIAWLASLSLPDNSHDFTSVSLYHPTEYPMNEGRIVSDRGLNISKEE 240
Query: 234 SQPYECYSELDFDIPIG-------KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKV 286
Y +D+ + R + + ++ Q + +
Sbjct: 241 FDSYFKEYHVDYSNALHCLLQNKPYLVGPLARINNCFGHLPVPIHLLLQSL------SIQ 294
Query: 287 GPVSASDPKIVPPKRADMKRSMESLIHHF-----KLYTEGYHVPVGEVYAAVEAPKGEFG 341
P I+ +E++ + GE EAP+G
Sbjct: 295 FPSRNMCHSIIARAVEMYYCVLEAIRILEQYDLPEQSRPEIKPQAGEGAGCTEAPRGMLW 354
Query: 342 VYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLA-------DVSA-----ILGSLDI 389
+ + D + + +I P + +E K + + I+ + D
Sbjct: 355 QHYVFDETGQVLQARIVPPTSQNQARIEEDLKHSLIQFGLNQEEEAIRYFSEMIIRNYDP 414
Query: 390 VFGE--------VDR 396
+DR
Sbjct: 415 CISCSTHFLNLKIDR 429
>gi|58042482|gb|AAW63681.1| NADH dehydrogenase subunit 7 [Philodendron hederaceum var.
oxycardium]
Length = 194
Score = 186 bits (472), Expect = 6e-45, Method: Composition-based stats.
Identities = 118/194 (60%), Positives = 146/194 (75%)
Query: 31 DGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGI 90
+GE+VER +PHIG LHRGTEKLIE KT+LQA+PY DR DYV+ M QEHA++ AVE+LL
Sbjct: 1 NGEVVERAEPHIGSLHRGTEKLIEYKTYLQALPYSDRSDYVSTMAQEHAHSSAVERLLNC 60
Query: 91 EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSR 150
E+P+R Q IRVL+ EI RI +H L TT AMDVGA TP LW EEREKL+ FYER G+R
Sbjct: 61 EVPLRAQYIRVLFREITRISNHSLASTTHAMDVGASTPFLWASEEREKLLEFYERVPGAR 120
Query: 151 MHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLE 210
MHA++ RPGGV QD+P L DI F S ++++ ++ TGNRI+KQR V+IGTV +
Sbjct: 121 MHASFIRPGGVAQDLPLGLCRDIDSSTQQFASRIDELEEMSTGNRIWKQRLVDIGTVTAQ 180
Query: 211 DAWGWGFSGVMIRG 224
A WGFSGVM+RG
Sbjct: 181 QAKDWGFSGVMLRG 194
>gi|83311041|ref|YP_421305.1| uptake hydrogenase [Magnetospirillum magneticum AMB-1]
gi|82945882|dbj|BAE50746.1| uptake hydrogenase [Magnetospirillum magneticum AMB-1]
Length = 481
Score = 185 bits (471), Expect = 7e-45, Method: Composition-based stats.
Identities = 65/474 (13%), Positives = 121/474 (25%), Gaps = 96/474 (20%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
GP + G L + L++ V + L+RG E+++ + A+ R+ +
Sbjct: 10 VGPFN-RVEGDLEVTLDVQDGRVAEARVNAP-LYRGFEQILLGRPPSDALVIAPRICGIC 67
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV--------- 123
++Q A A A+ L +P G L L HL +
Sbjct: 68 SVSQSVASARALAGLGPAAMPENGTLATNLILACENAADHLTHFMLFFAPDLARSCYGGR 127
Query: 124 ------------GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
G R + + +G H+ +PGGV + + P
Sbjct: 128 PWFAAARRRFAAGDGECARALLPARARFLHLMGLLAGKWPHSLALQPGGVTKAVDPGEKI 187
Query: 172 DIGCWCDSFPSALN------------------DISDLLTGNRIFKQRNVNIGTVKLEDAW 213
+ F AL + + + +
Sbjct: 188 RLLSILAEFREALETHLFADSLEAIAALDGLPALDAWADAAPPEAGDFRLFLHIARDLDF 247
Query: 214 GWGFSGVMIRGS---------------------------GAAWDLRKSQPYECYSELDFD 246
+G S A +
Sbjct: 248 TGLGAGPGRFISSGSFGLFAPGVWAQGASTPFDPAQVSEDHAHSWMEGAILAPAVGKTIP 307
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL------GKNKVGPVSASD-PKIVPP 299
P G + + ++ E + RQ V+ G V +++
Sbjct: 308 APDKPEGYSWCKAPRLDGQVAEVGALARQVVDGHPLARALNAARPGGSVHDRVVARLLEL 367
Query: 300 KRA--DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKI 357
R M+ + ++ + G VEA +G G +L + + +I
Sbjct: 368 ARLIPAMESWIRAIRPAEPFCAPPSPLGEGAAVGLVEAARGTLGHWLGLH-NGRIAQYQI 426
Query: 358 RAPGYAHLQ---------AMEFLCKG--------HQLADVSAILGSLDIVFGEV 394
AP + A+E G +A V ++ S D
Sbjct: 427 VAPTTWNFSPRDAQGNPGALEIALAGAPVLPGETTPVA-VQHVVRSFDPCMVCT 479
>gi|288553284|ref|YP_003425219.1| [Ni/Fe] hydrogenase large subunit [Bacillus pseudofirmus OF4]
gi|288544444|gb|ADC48327.1| [Ni/Fe] hydrogenase, large subunit [Bacillus pseudofirmus OF4]
Length = 473
Score = 185 bits (471), Expect = 8e-45, Method: Composition-based stats.
Identities = 58/445 (13%), Positives = 112/445 (25%), Gaps = 74/445 (16%)
Query: 22 GVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYA 81
G + + + ++ V G L RG E+++ ++ AV + R+ + A +
Sbjct: 15 GFMEIDVYIENNRVVDAKTK-GHLFRGFEQMLVGRSPFDAVYFTQRICGICSAAHSIASS 73
Query: 82 LAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL--------------- 126
LA+E L I +G+ +R + + +H+ + +
Sbjct: 74 LALEDALNIHPLEQGRYLRDIIHCCEFLQNHVRHFYQYTVPDYVKLESNSLFNTDHHDFR 133
Query: 127 ----------TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCW 176
E G H GG+ E V +
Sbjct: 134 LPKQINDRISRHYFESLEYSRLAHQMLAILGGKAPHNHGVFIGGITTQATAENVVKLDDS 193
Query: 177 CDSF-----PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGS------ 225
+ D D+ + + G + A+ +
Sbjct: 194 LQKISRFINDKMIPDAYDIAAYYSDYYRLGGGYGNLLTYGAFNNYKDLGTLYVDPLISKM 253
Query: 226 -------------------GAAWDLRKSQPYECYSEL-DFDIPIGKHGDCYDRYLVRMME 265
+W + Y SE+ + D+ + + + +
Sbjct: 254 NANNNLVEPFQEKNIKEKIDYSWYKASNAAYRPDSEMAEPDMEMNEKAYSWVKAPRYEGL 313
Query: 266 MRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK-RADMKRSMESLIHHFKLYTEGYHV 324
E + R ++ + K MK + S+I + L
Sbjct: 314 PFEVGPLARLILSGEYQNGISAMDRTLARALEAKKICEIMKELLHSVIPNVDLQKAYEIP 373
Query: 325 PVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGH 375
V+ +G G +L K +I P E G
Sbjct: 374 EQASGRGLVDTIRGALGHWLKV-ENKKISFYQIITPSTWDFSTKDDLGYRGVAEEALIGT 432
Query: 376 QLAD------VSAILGSLDIVFGEV 394
+ D V IL S D
Sbjct: 433 PINDPNNPAEVGRILRSFDPCMSCA 457
>gi|213400897|gb|ACJ47097.1| NADH dehydrogenase subunit D [Wolbachia endosymbiont of Tribolium
confusum]
Length = 208
Score = 185 bits (471), Expect = 8e-45, Method: Composition-based stats.
Identities = 121/211 (57%), Positives = 163/211 (77%), Gaps = 4/211 (1%)
Query: 102 LYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGV 161
L+ E+ RIL+HLLN+++QA+DVGA+TP LW FEEREK++ FYERASG+R HAAY RPGG+
Sbjct: 2 LFCELTRILNHLLNISSQALDVGAMTPLLWLFEEREKILEFYERASGARFHAAYIRPGGL 61
Query: 162 HQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVM 221
DIP L+EDI + + FP ++D+ +LLT NRI+KQR V I + ++ A WGFSG M
Sbjct: 62 AADIPEGLIEDIAEFIEQFPKYIDDVDELLTENRIWKQRTVGISEISIKQALDWGFSGPM 121
Query: 222 IRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL 281
+R +G AWDLRKSQPYE Y +LDFDIP+G++GDCYDRYLVRM E+R+S+ +++QC+ ++
Sbjct: 122 LRAAGLAWDLRKSQPYEIYDQLDFDIPVGQNGDCYDRYLVRMAEIRQSISLVKQCIEKM- 180
Query: 282 GKNKVGPVSASDPKIVPPKRADMKRSMESLI 312
GP+ D KI PP RA+MK SME++I
Sbjct: 181 ---PEGPIKTEDRKISPPPRAEMKESMEAMI 208
>gi|46392528|gb|AAS91024.1| HupV [Azorhizobium caulinodans ORS 571]
Length = 490
Score = 185 bits (471), Expect = 8e-45, Method: Composition-based stats.
Identities = 72/477 (15%), Positives = 134/477 (28%), Gaps = 98/477 (20%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
GP + G L + LE+ V R L RG E+++E + A+ R+ +
Sbjct: 15 VGPFN-RVEGDLEVRLEVADGAV-RAAFVSSPLFRGFERILEGRDPFDALVIAPRICGIC 72
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP--- 129
++Q A ALA+ + G+ G++ L + HL + M A
Sbjct: 73 SVSQSQAAALALAQWQGLAPTANGRIATNLLVAAENVADHLTHFHLFFMPDFARAAYADR 132
Query: 130 ------------------LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
E R LM +G H +PGGV + P
Sbjct: 133 PWFAAAEARFKAGRGTSARRLIEARATLMHVLGLLAGRWPHTLAIQPGGVTRRAEPRDQM 192
Query: 172 DIGCWCDSFPSALN------------------DISDL--------------------LTG 193
+ + + L ++ LT
Sbjct: 193 RLLATLGAVRATLEQTLYGAPLERISALADPRELEAWRALGPDGDFRLFLEIAADLDLTH 252
Query: 194 NRIFKQRNVNIGTVKLEDAWGW----GFSGVMIRGS--------GAAWDLRKSQPYECYS 241
R ++ G E+ + GV+ A ++ P+ ++
Sbjct: 253 LGRAYDRFLSFGAYPGEEGPHYPAGTFADGVLGGVDEAAIAEDHTFARMEDRAAPHHPFA 312
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL------GKNKVGPVSASDPK 295
+ G + + + E+ + RQ ++ S +
Sbjct: 313 GSTIPDGFDETGYTWCKAPRLAGQPFETGALARQFMDGQPLARALVAAGGGNVFSRVIGR 372
Query: 296 IVPPKR--ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPY 353
++ R M+ + +L G + G EA +G G ++ +
Sbjct: 373 LIETARTLIAMEGWVRALEPAEPWCAHGTNPSEGRGAGLTEAARGALGHWMEVR-NGRIA 431
Query: 354 RCKIRAPGYAHLQ---------AMEFLCKGHQLAD-------VSAILGSLDIVFGEV 394
R +I AP + +E G + + V I+ S D
Sbjct: 432 RYQIIAPTTWNFSPRDAAGVPGPLEAALVGAPVQEGETTPLFVHHIVRSFDPCMVCT 488
>gi|213621461|ref|ZP_03374244.1| formate hydrogenlyase subunit 5 [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 330
Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats.
Identities = 50/190 (26%), Positives = 84/190 (44%), Gaps = 1/190 (0%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 140 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 199
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 200 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 259
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ E +
Sbjct: 260 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKEDMIQTRQLAQQMRRD 319
Query: 184 LNDISDLLTG 193
+ ++ D+L
Sbjct: 320 VQELVDMLLS 329
>gi|213400915|gb|ACJ47106.1| NADH dehydrogenase subunit D [Wolbachia endosymbiont of
Cordylochernes scorpioides]
Length = 208
Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats.
Identities = 123/211 (58%), Positives = 162/211 (76%), Gaps = 4/211 (1%)
Query: 102 LYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGV 161
L+ E+ RIL+HLLN+++QA+DVGA+TP LW FEEREK++ FYERASG+R HAAY RPGGV
Sbjct: 2 LFCELTRILNHLLNISSQALDVGAMTPLLWLFEEREKILEFYERASGARFHAAYIRPGGV 61
Query: 162 HQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVM 221
D+P L+EDI + + FP ++D+ +LLT NRI+KQR V I + ++ A WGFSG M
Sbjct: 62 AADVPEGLIEDIAKFIEQFPKYIDDVDELLTENRIWKQRTVGISEISVKQALDWGFSGPM 121
Query: 222 IRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL 281
+R +G AWDLRKSQPYE Y +LDFDIP+G++GDCYDRYLVRM E+R+SV +++QC+ ++
Sbjct: 122 LRAAGLAWDLRKSQPYEVYDQLDFDIPVGQNGDCYDRYLVRMAEIRQSVGLVKQCIEKI- 180
Query: 282 GKNKVGPVSASDPKIVPPKRADMKRSMESLI 312
G V D KI PP RA+MK SME+LI
Sbjct: 181 ---PEGLVKTEDRKISPPPRAEMKESMEALI 208
>gi|156305133|ref|XP_001617526.1| hypothetical protein NEMVEDRAFT_v1g157401 [Nematostella vectensis]
gi|156194353|gb|EDO25426.1| predicted protein [Nematostella vectensis]
Length = 150
Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats.
Identities = 94/153 (61%), Positives = 123/153 (80%), Gaps = 4/153 (2%)
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
DF IP+G++GDCYDRYL+R+ EMR+S+ I++QC+ + K G V D KI PP RA+
Sbjct: 2 DFQIPVGRNGDCYDRYLLRVEEMRQSLIIVQQCLVNI----KPGLVKVDDKKITPPSRAN 57
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
MK SMESLIHHFKLYTEGY +PV Y+ VEAPKGEFG+Y++SDG NKPYRC+I+APG+
Sbjct: 58 MKFSMESLIHHFKLYTEGYSLPVASSYSVVEAPKGEFGLYIVSDGTNKPYRCRIKAPGFL 117
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HLQ+++++ KGH +ADV I+G+ DIVFGE+DR
Sbjct: 118 HLQSLDYMSKGHMIADVVTIVGTQDIVFGEIDR 150
>gi|18767373|gb|AAL79339.1|AC099402_3 Putative NADH dehydrogenase 49kDa protein [Oryza sativa]
gi|21327373|gb|AAM48278.1|AC122148_31 Putative NADH dehydrogenase 49kDa protein [Oryza sativa Japonica
Group]
gi|31431494|gb|AAP53267.1| NAD, putative [Oryza sativa Japonica Group]
Length = 352
Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats.
Identities = 85/203 (41%), Positives = 116/203 (57%), Gaps = 5/203 (2%)
Query: 193 GNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKH 252
N IF +R +G + E+A WG SG M+R SG WDLRK YE Y++ D+ + K
Sbjct: 154 RNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDLYESYNQFDWKVQWQKE 213
Query: 253 GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLI 312
GD RYLVR+ EMRES+KII+Q V ++ G GP + + + E
Sbjct: 214 GDSLARYLVRIGEMRESIKIIQQAVEKIPG----GPYENLEVRCFKKAKNSEWNDFE-YR 268
Query: 313 HHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLC 372
K + + + E+YA VEAPKGE G+YL+ D P+R KIR PG+ +LQ + L
Sbjct: 269 FLGKKPSPNFELSKQELYARVEAPKGELGIYLVGDDSLFPWRWKIRPPGFINLQILPQLV 328
Query: 373 KGHQLADVSAILGSLDIVFGEVD 395
K +LAD+ ILGS+DI+ GEVD
Sbjct: 329 KKMKLADIMTILGSIDIIMGEVD 351
>gi|289595758|ref|YP_003482454.1| nickel-dependent hydrogenase large subunit [Aciduliprofundum boonei
T469]
gi|289533545|gb|ADD07892.1| nickel-dependent hydrogenase large subunit [Aciduliprofundum boonei
T469]
Length = 421
Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats.
Identities = 68/404 (16%), Positives = 123/404 (30%), Gaps = 34/404 (8%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLH---RGTEKLIETKTFLQAVPYFDRLDYVAPMNQ 76
G L +E++ E ++RV I +H R E + K++ R+ + +
Sbjct: 14 IEGHANLTIEIEDENLKRV---IFGVHEGSRYFEAFMVGKSYKYLPELAGRICGICTVAH 70
Query: 77 EHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG------------ 124
E A AVE LGIEI + +R L I SH+L++ A+
Sbjct: 71 EIASVRAVEDALGIEISEEVEDLRKLMLISSHIQSHILHLYFLALPDYRNVESIIELANK 130
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
+ FE +E E G + PG V + I E +E L
Sbjct: 131 NVNLVKKAFELKEASNYMTELIGGRAVQPCTIVPGKVSKRIGKETIERYIKKMKDIYPFL 190
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA--AWDLRKSQPYECYSE 242
D ++L K + + + G + S ++
Sbjct: 191 LDTAELFLSLEYPKYERESEYVALWDGHSIPLYKGEIATLSSIFDPHQYQEHIREWVVEY 250
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+ D L R+ R + R+ R + ++ +
Sbjct: 251 SSAKHSLIDGRDYMVGALARLNINRNLREEARELAERYGVRFPSNRIAWINLAQALENVY 310
Query: 303 DMKRSMESLIHHFKLYTEGYHVP--VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
++E + + ++P GE +EAP+G + K I P
Sbjct: 311 FALEAIEIAENLKEYDPHKINIPRVSGEGVGVIEAPRGLLIHHYKIK-NGKCTYVNIITP 369
Query: 361 GYAHLQAMEFLCKGHQL-----------ADVSAILGSLDIVFGE 393
+ + +E KG+ + I+ + D
Sbjct: 370 TAMNTENVERNLKGYISQIVSKNDEYIKMEAEKIIRAYDPCISC 413
>gi|74317281|ref|YP_315021.1| hypothetical protein Tbd_1263 [Thiobacillus denitrificans ATCC
25259]
gi|74056776|gb|AAZ97216.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC
25259]
Length = 433
Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats.
Identities = 48/405 (11%), Positives = 102/405 (25%), Gaps = 30/405 (7%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L L ++ + + I R EK +E + + + R+ + P+ +
Sbjct: 18 VEGEGALDLGIEAGRITEMRLRIFEPPRFFEKFLEGRHYSEIPDMVARICGICPVAYQVT 77
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA------------LT 127
A A+E+L +E+ + +R ++ I SH L++ A
Sbjct: 78 AAQALERLFAVELSPWARAMRRVFYCGEWIQSHSLHIHLLAAPDFFGCSSAIELARIAPD 137
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
G + + +H R GG H + I + + +
Sbjct: 138 AVRRGLRLQRLGNDLIDLFGARSVHPVGLRVGGFHAAPTRAQIAAIRANLHAALADAEAL 197
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ + + +G + G A + +
Sbjct: 198 VRWAAEIAVPRDAQAFVSVALRHPQAYPIEAGDIHADDGLAIGVDDFEQNFHEHHAPHST 257
Query: 248 PIGKHGDCYDRYLVRMME-MRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ + + ++ Q V P ++ +
Sbjct: 258 ALYSAYRGQPYLVGPLARLNLNHDRLPAQIVALAAECGIALPSRNVFDSLLARAIEILLA 317
Query: 307 SMESLIHHFKLYTE-----GYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
E+ G A EAP+G D + +I P
Sbjct: 318 VHEAHALLADYREPDSPWTPVTPRAGIAVGATEAPRGPLWHRYEIDADGRVVSARIVPPT 377
Query: 362 YAHLQAMEFLCK------GHQLAD------VSAILGSLDIVFGEV 394
+ +E + G D ++ + D
Sbjct: 378 SQNQARIEEDLRLSLEALGLDQPDDALRLHCEKVIRNYDPCISCA 422
>gi|317052168|ref|YP_004113284.1| nickel-dependent hydrogenase large subunit [Desulfurispirillum
indicum S5]
gi|316947252|gb|ADU66728.1| nickel-dependent hydrogenase large subunit [Desulfurispirillum
indicum S5]
Length = 476
Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats.
Identities = 59/438 (13%), Positives = 117/438 (26%), Gaps = 65/438 (14%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ L+LD V H+ RG EK ++F + R+ + P++
Sbjct: 13 IEGHAKITLQLDDAGAVADARFHV-TEFRGFEKFCIGRSFQEMPGITARICGICPVSHTL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTT-------------------Q 119
A A A + +LG+ IP +L+R L + + SH L+
Sbjct: 72 ASAKAGDAILGVRIPPAAKLLRRLMNWAQIVQSHALSFFHLSGPDLLLGMESDPATRNIF 131
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
+ G R+ +H A+ PGGV + + + I
Sbjct: 132 GLMESHTDLARDGIRLRQFGQELIRLLGDRSVHPAWAIPGGVREPLSSSGRDTIARDLPE 191
Query: 180 FPSALNDISDLLTG-NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSG------------ 226
+L + G G +G + G
Sbjct: 192 ALLIATRALELGNKVLERHGREAAAYGNFDSMFLGMVGENGALEHYDGNLRLIDSSGKNV 251
Query: 227 ----------------AAWDLRKSQPYEC--YSELDFDIPIGKHGDCYDRYLVRMMEMRE 268
W K Y+ Y + +G
Sbjct: 252 EECDPARFLPLIGEGEEVWTYLKFPYYKPAGYEQDRGMYRVGPLARLNVADFASTPLADR 311
Query: 269 SVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGE 328
++ RQ + + + +++++E+ + + V E
Sbjct: 312 ELRRFRQWGKGGRPVLQSFLYHQARLIEILHALESIQQALENPVLGEEHVRSHASVNHEE 371
Query: 329 VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFL--------CKGHQLAD- 379
EAP+G + D + + +AM +G ++ +
Sbjct: 372 GIGVTEAPRGTLFHHYKVDENGLLTHVNLIIATGQNNRAMNRTVLQIAQAELRGQEITEG 431
Query: 380 ----VSAILGSLDIVFGE 393
+ + + D
Sbjct: 432 LLNRIEHGIRAYDPCLSC 449
>gi|289522159|ref|ZP_06439013.1| NAD-reducing hydrogenase, beta subunit [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289503995|gb|EFD25159.1| NAD-reducing hydrogenase, beta subunit [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 477
Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats.
Identities = 60/454 (13%), Positives = 128/454 (28%), Gaps = 74/454 (16%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELD--GEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ + + P G ++ + LD GE V+ H+ +RG E + + F +
Sbjct: 4 TEVYKLEINPVT-RIEGHGKITVMLDEAGE-VKEARFHV-TQYRGFEVFTKGRDFREMPV 60
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
R+ + P++ A A A + +LG+ I +R L + SH L+ +
Sbjct: 61 ITPRICGICPVSHHLASAKACDDILGVTITPAAHKLRELMHMGQIVQSHALSFFHLSSPD 120
Query: 124 G-------------------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQD 164
G R+ + G ++H + PGGV++
Sbjct: 121 ILLGFDAPVKIRNVVGLAERYPELAKKGILLRKFGQEIIKTLGGKKVHPWHSIPGGVNRS 180
Query: 165 IPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRG 224
+ P+ ++I S + L+ G + G G +
Sbjct: 181 LTPQERDNIAAQIPEMKSIALEAIKLIKGYLEEGKEEAKEFATVETAYMGLVRDGNLELY 240
Query: 225 SG----------------------------AAWDLRKSQPYECYSELDFDIPIGKHGDCY 256
G W K Y+ +G
Sbjct: 241 DGNIRIKAPRGRILDEFDPKDYLKYIGEHVEPWSYLKFPFYKSLGFPHGSYRVGPLARLN 300
Query: 257 DRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFK 316
+ + + + +Q + + + P + + +E L+ +
Sbjct: 301 AADNIDTPQASKEYALYKQITD-----DGIVPYTLYYHYARLIEALYGIERIEQLLSDPE 355
Query: 317 LYTEGYHVPVG----EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFL- 371
+ + V E +EAP+G + + + + + AM
Sbjct: 356 ITSSDLRVTSKEMNPEGVGVIEAPRGTLIHHYWVNESGVITKVNLIVATGHNNYAMNKGV 415
Query: 372 -------CKGHQLAD-----VSAILGSLDIVFGE 393
KG + + + ++ + D
Sbjct: 416 EAVAKKFIKGRDIPEGVFNRLEHVIRAYDPCLSC 449
>gi|213400901|gb|ACJ47099.1| NADH dehydrogenase subunit D [Wolbachia endosymbiont of Onchocerca
volvulus]
Length = 204
Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats.
Identities = 122/208 (58%), Positives = 160/208 (76%), Gaps = 4/208 (1%)
Query: 105 EIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQD 164
E+ RIL+HLLN+++QA+DVGA+TP LW FEEREK++ FYERASG+R HAAY RPGG+ D
Sbjct: 1 ELTRILNHLLNISSQALDVGAMTPLLWLFEEREKILEFYERASGARFHAAYIRPGGIAAD 60
Query: 165 IPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRG 224
+P L+EDI + + FP ++D+ DLLT NRI+KQR V I + ++ WGFSG M+R
Sbjct: 61 VPEGLIEDIAKFIEQFPKYIDDVDDLLTENRIWKQRTVGISKMSIKQVLDWGFSGPMLRA 120
Query: 225 SGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKN 284
+G AWDLRKSQPYE Y +LDFDIPIG++GDCYDRYLVRM E+R+S +++QC+ ++
Sbjct: 121 AGLAWDLRKSQPYEVYDQLDFDIPIGRNGDCYDRYLVRMEEIRQSTSLVKQCIEKMPR-- 178
Query: 285 KVGPVSASDPKIVPPKRADMKRSMESLI 312
GPV D KI PP RA+MK+SME+LI
Sbjct: 179 --GPVKTEDRKISPPPRAEMKKSMEALI 204
>gi|1943536|pdb|1FRV|B Chain B, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
gi|1943538|pdb|1FRV|D Chain D, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
Length = 536
Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats.
Identities = 71/519 (13%), Positives = 129/519 (24%), Gaps = 147/519 (28%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E++G ++ + L RG E +++ + A + R V A
Sbjct: 17 IEGHLRIEVEVEGGKIKNA-WSMSTLFRGLEMILKGRDPRDAQHFTQRACGVCTYVHALA 75
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV------GALTPPLWGF 133
AV+ +G++IP L+R L + HL++ P
Sbjct: 76 SVRAVDNCVGVKIPENATLMRNLTMGAQYMHDHLVHFYHLHALDWVNVANALNADPAKAA 135
Query: 134 EE------REKLMVFYERASGS-------------------RMHAAYFRPGGVHQDIPPE 168
R+ + H AY P V
Sbjct: 136 RLANDLSPRKTTTESLKAVQAKVKALVESGQLGIFTNAYFLGGHPAYVLPAEVDLIATAH 195
Query: 169 LVEDIGCWCDSFPSALND------------------------------------------ 186
+E + + +
Sbjct: 196 YLEALRVQVKAARAMAIFGAKNPHTQFTVVGGCTNYDSLRPERIAEFRKLYKEVREFIEQ 255
Query: 187 -ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGS-----GAAWD---------- 230
L F + IG G + S G W
Sbjct: 256 VYITDLLAVAGFYKNWAGIGKTSNFLTCGEFPTDEYDLNSRYTPQGVIWGNDLSKVDDFN 315
Query: 231 ---LRKSQPYECYSELD------------FDIPIGKHGDCYDRYLVRMMEMRESVKI--- 272
+ + Y Y D + G+ + + E E +
Sbjct: 316 PDLIEEHVKYSWYEGADAHHPYKGVTKPKWTEFHGEDRYSWMKAPRYKGEAFEVGPLASV 375
Query: 273 ----------IRQCVNRLLGKNKVGPVSASDPKIVPPKRA--------DMKRSMESLIHH 314
+ V+ +L VGP + R +++ ++ L +
Sbjct: 376 LVAYAKKHEPTVKAVDLVLKTLGVGPEALFSTLGRTAARGIQCLTAAQEVEVWLDKLEAN 435
Query: 315 FK-----LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH----- 364
K LYT+ + + V AP+G +++ G K + P +
Sbjct: 436 VKAGKDDLYTDWQYPTESQGVGFVNAPRGMLSHWIVQRG-GKIENFQHVVPSTWNLGPRC 494
Query: 365 ----LQAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
L A+E G +AD + + S D
Sbjct: 495 AERKLSAVEQALIGTPIADPKRPVEILRTVHSYDPCIAC 533
>gi|6466828|gb|AAF13047.1|AF157641_3 putative Ni/Fe hydrogenase large subunit precursor
[Desulfitobacterium dehalogenans]
Length = 516
Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats.
Identities = 64/491 (13%), Positives = 123/491 (25%), Gaps = 119/491 (24%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L++ +E+ +V IG + RG ++++ A +R V A
Sbjct: 12 IEGHLKVEVEVTNGVVTDAR-SIGTMFRGL-NAVKSRDPRDATYVTERTCGVCASAHGWA 69
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG--------------- 124
+L ++ G ++P G++IR L + + L+ +
Sbjct: 70 SSLCLDDAFGAKVPAGGRIIRNLITSAMWLHDAALHFYHLSALDFLDITAVAKYQGQDPG 129
Query: 125 --------------------------------------ALTPPLWGFEEREKLMVFYERA 146
A++ L + + K
Sbjct: 130 LLRVKEKIGKLIAAGTAPLTPRYEPDEYCVNDPELVTLAVSHYLKALDMQAKAKKMSALF 189
Query: 147 SGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN--DISDLLTG----------- 193
+G + H + GGV E+VE L + D+LT
Sbjct: 190 AGKQPHQSSIVVGGVTMLPNIEVVEQYRSLLLEQIDFLENVYLQDVLTFGTGPLLPLAQA 249
Query: 194 -----------------NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQP 236
+ K + G + D G + K P
Sbjct: 250 GVGGGYNNFLSFGGFGLDDEKKNFFLPAGVIMDGDLSKVMAVDQSKVTEGVTYAWYKDSP 309
Query: 237 Y--ECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCV----------NRLLGKN 284
Y K + + + E + R V + K
Sbjct: 310 KGDHPYDSDTVPDIKRKDAYSFVKAPRYDGKPVEVGNLARMLVMQPKPFMDIVAKYSIKP 369
Query: 285 KVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGY-----HVPV-GEVYAAVEAPKG 338
V A+ +M +L +E + P G+ E P+G
Sbjct: 370 GVVARHAARAYEAVILAKEMLNWCNALEAEIGKVSEFTIPSIGNPPATGQGVGLTEVPRG 429
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLAD------VSAI 383
G ++ ++ P + +E G + D + +
Sbjct: 430 ALGHWIKIKDHKT-ENYQMVVPTTWNFSPKDAQGNYGPLEKALIGVPVPDENNPINIVRV 488
Query: 384 LGSLDIVFGEV 394
+ SL+
Sbjct: 489 VRSLNPCLACA 499
>gi|130103|sp|P12944|PHNL_DESGI RecName: Full=Periplasmic [NiFe] hydrogenase large subunit;
AltName: Full=NiFe hydrogenlyase large chain; Flags:
Precursor
Length = 551
Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats.
Identities = 71/519 (13%), Positives = 129/519 (24%), Gaps = 147/519 (28%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E++G ++ + L RG E +++ + A + R V A
Sbjct: 17 IEGHLRIEVEVEGGKIKNA-WSMSTLFRGLEMILKGRDPRDAQHFTQRACGVCTYVHALA 75
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV------GALTPPLWGF 133
AV+ +G++IP L+R L + HL++ P
Sbjct: 76 SVRAVDNCVGVKIPENATLMRNLTMGAQYMHDHLVHFYHLHALDWVNVANALNADPAKAA 135
Query: 134 EE------REKLMVFYERASGS-------------------RMHAAYFRPGGVHQDIPPE 168
R+ + H AY P V
Sbjct: 136 RLANDLSPRKTTTESLKAVQAKVKALVESGQLGIFTNAYFLGGHPAYVLPAEVDLIATAH 195
Query: 169 LVEDIGCWCDSFPSALND------------------------------------------ 186
+E + + +
Sbjct: 196 YLEALRVQVKAARAMAIFGAKNPHTQFTVVGGCTNYDSLRPERIAEFRKLYKEVREFIEQ 255
Query: 187 -ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGS-----GAAWD---------- 230
L F + IG G + S G W
Sbjct: 256 VYITDLLAVAGFYKNWAGIGKTSNFLTCGEFPTDEYDLNSRYTPQGVIWGNDLSKVDDFN 315
Query: 231 ---LRKSQPYECYSELD------------FDIPIGKHGDCYDRYLVRMMEMRESVKI--- 272
+ + Y Y D + G+ + + E E +
Sbjct: 316 PDLIEEHVKYSWYEGADAHHPYKGVTKPKWTEFHGEDRYSWMKAPRYKGEAFEVGPLASV 375
Query: 273 ----------IRQCVNRLLGKNKVGPVSASDPKIVPPKRA--------DMKRSMESLIHH 314
+ V+ +L VGP + R +++ ++ L +
Sbjct: 376 LVAYAKKHEPTVKAVDLVLKTLGVGPEALFSTLGRTAARGIQCLTAAQEVEVWLDKLEAN 435
Query: 315 FK-----LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH----- 364
K LYT+ + + V AP+G +++ G K + P +
Sbjct: 436 VKAGKDDLYTDWQYPTESQGVGFVNAPRGMLSHWIVQRG-GKIENFQHVVPSTWNLGPRC 494
Query: 365 ----LQAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
L A+E G +AD + + S D
Sbjct: 495 AERKLSAVEQALIGTPIADPKRPVEILRTVHSYDPCIAC 533
>gi|119900097|ref|YP_935310.1| ferredoxin hydrogenase large subunit [Azoarcus sp. BH72]
gi|119672510|emb|CAL96424.1| probable ferredoxin hydrogenase, large subunit [Azoarcus sp. BH72]
Length = 483
Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats.
Identities = 69/481 (14%), Positives = 126/481 (26%), Gaps = 100/481 (20%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
I GP + G L + L++ V + L RG E+++ K A+ + R+
Sbjct: 4 IVVGPFN-RVEGDLEVTLDVADGRVAAARVNSP-LFRGFEQILVGKDPRDALVFVPRICG 61
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ ++Q A A A+ +G+ +P G+ L + H + M A
Sbjct: 62 ICSVSQSAAAAAALRAAMGLAVPDNGRHAANLVLATENLADHFTHFYLFFMPDFARDAYA 121
Query: 131 ---------------------WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL 169
R M +G H +PGG + +
Sbjct: 122 GRPWFEAARARFKAVEGSATADALPARAAFMHTLGLLAGKWPHTLSLQPGGSARAVSAAE 181
Query: 170 VEDIGCWCDSFPSALN--------------------------------DISDLLTGNRIF 197
+ F L D L
Sbjct: 182 KIRLYALLREFRGWLERRLFGDSLEAIAALDSMAALEAWATARAPGASDFRLFLEIAADL 241
Query: 198 KQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAW--------------------DLRKSQPY 237
+ R T +G + + G LR P
Sbjct: 242 ELRRAGRATDVYLSYGAYGDADDALFARGVWRPGSATTALDAGAIVEDVSHAWLRDEAPR 301
Query: 238 ECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR--LLGKNKVGPVSASDPK 295
+ + + E+ E + RQ V+ LL + G + +
Sbjct: 302 HPLQGHTWPDADKAGAYSWCKAPRLGGEVVECGALARQLVDGQPLLRELVTGEGGSVFAR 361
Query: 296 IVPPKRA------DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGG 349
++ M+ + ++ +G + VEA +G G +L
Sbjct: 362 VLGRLLEFARVLPAMETWVRAIEPGAPFCAQGELPDDAQGVGLVEAARGALGHWLTVR-H 420
Query: 350 NKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLAD-------VSAILGSLDIVFGE 393
+ +I AP + A+E G +A+ V ++ S D
Sbjct: 421 GRIVGYQIIAPTTWNFSPRDAAGTPGALEQALVGLPMAEDGSVPALVQHVVRSFDPCMVC 480
Query: 394 V 394
Sbjct: 481 T 481
>gi|34329627|gb|AAQ63962.1| HoxH [Spirulina subsalsa FACHB351]
Length = 448
Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats.
Identities = 69/441 (15%), Positives = 122/441 (27%), Gaps = 74/441 (16%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD VE H+ + +RG EK E + F + R+ + P++
Sbjct: 6 IEGHAKISIYLDDAGEVEDARFHV-VEYRGFEKFCEGRPFTEMAGITARICGICPVSHLL 64
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A A +KLL +++ + G+ +R L + SH L+ +
Sbjct: 65 AAAKTGDKLLAVKVSVAGEKLRRLMNLGQFTQSHALSFFHLSSPDFLLGWDSDPATRNVF 124
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ E+ ++HAA+ PGGV + E I
Sbjct: 125 GLIAADPDLARAGIRLRQFGQTIIEKLGARKIHAAWAVPGGVRSPLSEEGRTWIRERLPE 184
Query: 180 FPSALNDISDLLTG-NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA----------- 227
L +L F G G +G G
Sbjct: 185 SFETLYTALNLFKQLLDRFTTETEEFGKFPSLFMGLVGKNGEWEHYGGHLRFRDSEGTII 244
Query: 228 ------------------AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRES 269
W K Y+ D +G R V E+
Sbjct: 245 ADHLSEDDYHSFIGEAVEPWSYLKFPYYKPLGYPDGIYRVGP----LARLNVCDHIGTEA 300
Query: 270 VKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVG-- 327
+ + G +++ A ++ L+ + +E G
Sbjct: 301 ADRELREMRDRAGGLPTSSFFYHYARLIEILAA--LEKIQQLMDDPDVVSERVRAQAGIN 358
Query: 328 --EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFL--------CKGHQL 377
E EAP+G + D + + + AM G+++
Sbjct: 359 ELEGVGVSEAPRGTLFHHYKVDENGLIQKVNLIIATGQNNLAMNKTVTQIAKHYIHGNEI 418
Query: 378 AD-----VSAILGSLDIVFGE 393
+ V A + D
Sbjct: 419 PEGLLNRVEAGIRCFDPCLSC 439
>gi|288941585|ref|YP_003443825.1| nickel-dependent hydrogenase large subunit [Allochromatium vinosum
DSM 180]
gi|288896957|gb|ADC62793.1| nickel-dependent hydrogenase large subunit [Allochromatium vinosum
DSM 180]
Length = 474
Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats.
Identities = 60/440 (13%), Positives = 113/440 (25%), Gaps = 69/440 (15%)
Query: 20 AHGVLRLILEL-DGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G R+ L+L + +E H+ RG EK E + + + R + P++
Sbjct: 13 IEGHARITLQLGEDGRLEDARFHL-TQFRGFEKFCEGRPYREMPALTARTCGICPVSHII 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A A + LL ++IP G+ +R + + + SH L+ +
Sbjct: 72 ASNKACDHLLAVDIPPTGEKLRRVMNLAQIVQSHALSFFHLSSPDLLLGWDSDPATRNIF 131
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ E G ++H + PGGV + + E E +
Sbjct: 132 GVMRQNPELARDGIRLRQIGQTIIETLGGKKIHPTWVVPGGVSEPLSVEKRESMLRLLPE 191
Query: 180 FPSALNDISDLL-TGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA----------- 227
T FK + GT G + G
Sbjct: 192 GLEIAKRTYAFYKTLVPKFKDEATHFGTQPTLFLSLVTPQGHLEHYDGVLRVKDAQGRIL 251
Query: 228 ------------------AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRES 269
+ K Y+ +G + +
Sbjct: 252 EDQVPPEEYGRLIGEAVEDFSYMKFPYYKPQGYPQGIYRVGPLARLNNVQACGTPYADVA 311
Query: 270 VKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR--ADMKRSMESLIHHFKLYTEGYHVPVG 327
+ + V ++V ++R ++
Sbjct: 312 LAEFHMLQD---SGPIVSSFHYHYARLVEIIYGLEMIERLLKDPAILDTRVRARARSNRY 368
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK--------GHQLAD 379
E EAP+G + D + + AM + G+ + +
Sbjct: 369 EGIGVAEAPRGTLMHHYRIDDDGLITWLNLVIATGHNNLAMNQSIREVAEAYVDGNAIEE 428
Query: 380 -----VSAILGSLDIVFGEV 394
V A++ D
Sbjct: 429 GMLNRVEAVIRCYDPCLSCA 448
>gi|294102536|ref|YP_003554394.1| nickel-dependent hydrogenase large subunit [Aminobacterium
colombiense DSM 12261]
gi|293617516|gb|ADE57670.1| nickel-dependent hydrogenase large subunit [Aminobacterium
colombiense DSM 12261]
Length = 477
Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats.
Identities = 66/459 (14%), Positives = 126/459 (27%), Gaps = 76/459 (16%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELD--GEIVERVDPHIGLLHRGTEKLIETKTF 58
M +K+++ +N P G ++ + L+ GE V H+ RG E + + F
Sbjct: 1 MCAEKAKTIVVN--PV-SRIEGHGKITVTLNEKGE-VHDARFHV-TQFRGFEAFTQGRDF 55
Query: 59 LQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTT 118
+ R+ + P++ A A A + +LG+ I +R L I SH L+
Sbjct: 56 REMPVITPRICGICPVSHHLASAKACDAILGVTITPTAHKLRELMHMGQFIQSHALSFFH 115
Query: 119 QAMDV-------------------GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
+ + G R+ + G ++H + PG
Sbjct: 116 LSSPDLLFGFDADPAIRNVAGLVAKFPDLAVMGVTMRKFGQEVIKTLGGKKVHPWHSIPG 175
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
GV++ + E E I L DL+ + G G
Sbjct: 176 GVNRSLKKEERETILAGIPKIKEDLRKALDLIKNYLAEHGDDAKEFATLETSYLGLVREG 235
Query: 220 VMIRGSGA----------------------------AWDLRKSQPYECYSELDFDIPIGK 251
+ G W K Y +G
Sbjct: 236 NLELYDGRIRLRGPRGRITDEFNSEEYVNFIGEHVEPWSYLKFPFYRPLEFPHGSYRVGP 295
Query: 252 HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESL 311
G + E + R+ + + +++ A ME L
Sbjct: 296 LGRVNACDTISTPEASAELAAFRKLTD---DGIVHYTMYYHYARLIEIMYAI--ERMEEL 350
Query: 312 IHHFKLYTEGYHVPVG----EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
+H + + E +EAP+G + + + + + A
Sbjct: 351 LHDEDIVGSELRITSNSLQPEGIGVIEAPRGTLIHHYQVNEKGAITKVNLIVATGHNNYA 410
Query: 368 MEFLCK--------GHQLAD-----VSAILGSLDIVFGE 393
M + G + + + ++ D
Sbjct: 411 MNKGVELVAKKYIHGESVEEGVLNRMEHVIRCYDPCLSC 449
>gi|189347575|ref|YP_001944104.1| nickel-dependent hydrogenase large subunit [Chlorobium limicola DSM
245]
gi|189341722|gb|ACD91125.1| nickel-dependent hydrogenase large subunit [Chlorobium limicola DSM
245]
Length = 424
Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats.
Identities = 58/411 (14%), Positives = 114/411 (27%), Gaps = 41/411 (9%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G + + + G + + R E +++ + + R+ + ++ A
Sbjct: 15 VEGHGNIRITVSGGKLLEARWAVVETPRFFEVMVKGMSAERVPFLTSRICGICSISHALA 74
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT------------ 127
A+E+ + I P + R+L + SH L++ A A T
Sbjct: 75 SIRALERAMLIAPPPAAETTRLLAMHGETLQSHALHLFFLAAPDFAGTSGVLPLLESQPE 134
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
G +E +G H GG+ + ++ + SAL
Sbjct: 135 LVRAGLGLKELGNEISAVTTGRCTHPVSLVVGGLSKAPDKIRLQQLLDMIGERKSALGIA 194
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA-----AWDLRKSQPYECYSE 242
D I + A G ++ G + ++ +S
Sbjct: 195 CDFFGTLDIPRFERETEFISLHNGATYPFIGGDLLSTDGVRKEENDYLPMTNEYVAEFST 254
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
F + + + L P + ++V
Sbjct: 255 SKFTRCSRESSAAGALARFNNNSGFLHPEAKKAAEKLGLRPICHNPFMCNITQLVE--CV 312
Query: 303 DMKRSMESLIH-----HFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKI 357
+ E+LI + G AVEAP+G ++ +D K +
Sbjct: 313 HILYDAETLIQKLLDTDLSDIRTPFAPKAGIATGAVEAPRGILYHHMETDEEGKVVKADC 372
Query: 358 RAPGYAH-------LQAMEFLC--KG------HQLADVSAILGSLDIVFGE 393
P + LQA+ +G +LA ++ S D
Sbjct: 373 IIPTTQNNANIHNDLQALARQAFEEGKNDREIEKLA--EMLVRSYDPCISC 421
>gi|254431485|ref|ZP_05045188.1| F420-non reducing hydrogenase, subunit alpha [Cyanobium sp. PCC
7001]
gi|197625938|gb|EDY38497.1| F420-non reducing hydrogenase, subunit alpha [Cyanobium sp. PCC
7001]
Length = 486
Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats.
Identities = 65/451 (14%), Positives = 123/451 (27%), Gaps = 82/451 (18%)
Query: 20 AHGVLRLILELD-GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ L LD + H+ + +RG E E + F + R+ + P++
Sbjct: 13 IEGHAKITLHLDASGRLADARFHV-VEYRGFETFCEGRPFTEMAGITARICGICPVSHLL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A A +KLL ++ P + +R + + SH L+ +
Sbjct: 72 AAAKTGDKLLAVQPPPAARKLRRMLNLAQLCQSHALSFFHLSSPDFLLGWESDPARRNVF 131
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ E G ++H+A+ PGGV + E I
Sbjct: 132 GLMAADPELARAGIRLRQFGQQVLELLGGRKIHSAWAVPGGVRTPLSDEARAWILERLPE 191
Query: 180 FP---SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAA-------- 228
+ +I L + ++++ T + G G R
Sbjct: 192 AKATTAKALEIYKRLLDGPLQREQS----TFGDFPSLFMGLVGPGGRWECIDGLIRFVDS 247
Query: 229 ------------------------WDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMM 264
W K Y+ + +G +
Sbjct: 248 AGAVVADGLSEDDYASYLGEAVESWSYLKFPYYKPLGYPEGIYRVGPLARLNVCEQIGTP 307
Query: 265 EMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHV 324
++ RQ ++ S + + +E L+ L T+
Sbjct: 308 WADRELQEFRQRSGTAASGGRIVTSSFAYHHARLVEIVACLEGIEKLVADDSLMTDRIRA 367
Query: 325 PVG----EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM------------ 368
E EAP+G + D R + + AM
Sbjct: 368 RASLNANEAVGVSEAPRGTLFHHYRVDDDGLITRVNLIIATGQNNLAMNRTVAQIAREFI 427
Query: 369 -EFLCKGHQLAD-----VSAILGSLDIVFGE 393
E + +G ++ + V A + D
Sbjct: 428 PEPVAEGAEIPEPLLNRVEAGIRCFDPCLSC 458
>gi|194334728|ref|YP_002016588.1| nickel-dependent hydrogenase large subunit [Prosthecochloris
aestuarii DSM 271]
gi|194312546|gb|ACF46941.1| nickel-dependent hydrogenase large subunit [Prosthecochloris
aestuarii DSM 271]
Length = 425
Score = 183 bits (466), Expect = 3e-44, Method: Composition-based stats.
Identities = 53/412 (12%), Positives = 108/412 (26%), Gaps = 34/412 (8%)
Query: 16 QHPA-AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPM 74
H G + + + + + R E ++ + + R+ + +
Sbjct: 11 HHITRVEGHGNIHITIRDGKLIDAQWAVVETPRFFEVMVRGLSAERVPFLTSRICGICSI 70
Query: 75 NQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG---------- 124
+ A ++E+ + I P +R L + SH L++ A+
Sbjct: 71 SHALASIRSLERAMQIAPPPAAVRLRQLAMHGETLQSHALHIFFLAVPDFVNTPNVLPLI 130
Query: 125 --ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
G + E +G H GG+ + + +E + +
Sbjct: 131 ETHPEIVQAGLRMKAAGNAISEIVTGRCTHPVSLVLGGLSKAPDRQALEGLKKQLEQVLP 190
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
L+ + T I G ++ G D +
Sbjct: 191 DLDLTAQFCTTLSIPDFVRETEFVSLQNGENYPAIGGDLVSTDGVCRDENDYLAMTNEYK 250
Query: 243 LDFDI--PIGKHGDCY-DRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
DF + + L R + ++ Q RL G V +
Sbjct: 251 PDFTTTKFTRLSRESFAAGALARFNNNYDLLRPEAQNAARLFGLEPVTHNPFMNNIAQLV 310
Query: 300 KRADMKRSMESLIHH-----FKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYR 354
+ + +LI + + G AVEAP+G ++ D K R
Sbjct: 311 ECYHIVNDAIALIEELLDAPLEKVKTAWKPKAGAATGAVEAPRGILYHHMEVDEKGKVVR 370
Query: 355 CKIRAPGYAHLQAMEF---LCKGHQLAD----------VSAILGSLDIVFGE 393
P + + L++ ++ S D
Sbjct: 371 GDCIIPTTQNNANIHHDLAALAKQALSEGKNDKEIQLLCEMLVRSYDPCISC 422
>gi|213400903|gb|ACJ47100.1| NADH dehydrogenase subunit D [Wolbachia endosymbiont of
Litomosoides sigmodontis]
Length = 208
Score = 183 bits (466), Expect = 3e-44, Method: Composition-based stats.
Identities = 122/211 (57%), Positives = 163/211 (77%), Gaps = 4/211 (1%)
Query: 102 LYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGV 161
L+ E+ RIL+HLLN+++QA+DVGA+TP LW FEEREK++ FYERASG+R HAAY RPGGV
Sbjct: 2 LFCELTRILNHLLNISSQALDVGAMTPLLWLFEEREKILEFYERASGARFHAAYIRPGGV 61
Query: 162 HQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVM 221
D+P L+EDI + + FP ++D+ +LLT NRI+KQR V I + ++ A WGFSG M
Sbjct: 62 AADVPEGLIEDIAEFIEHFPKYIDDVDELLTENRIWKQRTVGISEISIKQALDWGFSGPM 121
Query: 222 IRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL 281
+R +G AWDLRKSQPYE Y +LDFDIPIG++GDCY+RYLVRM E+R+S+ +++QC+ ++
Sbjct: 122 LRATGLAWDLRKSQPYEIYDQLDFDIPIGQNGDCYNRYLVRMEEIRQSISLVKQCIEKM- 180
Query: 282 GKNKVGPVSASDPKIVPPKRADMKRSMESLI 312
GPV + KI PP R +MKRSME+LI
Sbjct: 181 ---PKGPVKTENRKISPPPRTEMKRSMEALI 208
>gi|213400909|gb|ACJ47103.1| NADH dehydrogenase subunit D [Wolbachia endosymbiont of
Zootermopsis angusticollis]
Length = 208
Score = 183 bits (466), Expect = 3e-44, Method: Composition-based stats.
Identities = 122/211 (57%), Positives = 162/211 (76%), Gaps = 4/211 (1%)
Query: 102 LYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGV 161
L+ E+ RIL+HLLNV++QA+DVGA+TP LW FEEREK++ FYERASG+R HAAY RPGG+
Sbjct: 2 LFCELTRILNHLLNVSSQALDVGAMTPLLWLFEEREKILEFYERASGARFHAAYIRPGGI 61
Query: 162 HQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVM 221
D+P L+ED+ + + FP ++D+++LLT NRI+KQR V I + + A WGFSG M
Sbjct: 62 AADVPEGLIEDVAKFIEQFPKYIDDVNELLTENRIWKQRTVGISEISVAQALDWGFSGPM 121
Query: 222 IRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL 281
+R +G AWDLRKSQPYE Y +LDFDIPIG++GDCYDRYLVRM E+R+S+ +++QC+ +L
Sbjct: 122 LRAAGLAWDLRKSQPYEIYDQLDFDIPIGQNGDCYDRYLVRMAEIRQSINLVKQCIEKL- 180
Query: 282 GKNKVGPVSASDPKIVPPKRADMKRSMESLI 312
GP+ D KI PP R +MK SME+LI
Sbjct: 181 ---PEGPIKTEDRKISPPPREEMKISMEALI 208
>gi|119357954|ref|YP_912598.1| nickel-dependent hydrogenase, large subunit [Chlorobium
phaeobacteroides DSM 266]
gi|119355303|gb|ABL66174.1| nickel-dependent hydrogenase, large subunit [Chlorobium
phaeobacteroides DSM 266]
Length = 424
Score = 183 bits (466), Expect = 3e-44, Method: Composition-based stats.
Identities = 55/408 (13%), Positives = 112/408 (27%), Gaps = 35/408 (8%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +++ ++ + + R E +++ + + R+ + ++ A
Sbjct: 15 VEGHGNILIRVEKGQLVEARWDVVETPRFFEVMLKGMSAERVPFLTSRICGICSISHALA 74
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP----------- 128
A+E+ + + P + +R+L + SH L++ A A TP
Sbjct: 75 SIRALERAMQVTPPPTAEAVRLLAMHGETLQSHALHLFFLAAPDFAGTPSVLPLMESNPE 134
Query: 129 -PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
G +E +G H GG+ + ++ + +AL
Sbjct: 135 LVKAGLAIKELGNEISTVTAGRCTHPVSLVAGGISKAPDSNNLQRLLGMISERKAALVLA 194
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA----AWDLRKSQPYECYSEL 243
D I + A G + G LR + Y
Sbjct: 195 CDFFASLDIPRFERETEFISLYNGATYPFIGGDLCSTDGVREEENNYLRMTNEYLAEP-S 253
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
L R E + + LG + +
Sbjct: 254 TSKFTRCSRESSAAGALARFNNNSEFLHPEAKKAAERLGLRPISHNPFMCNIAQLVECVH 313
Query: 304 MKRSMESLIH-----HFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
+ E+LI G AVEAP+G ++ +D + +
Sbjct: 314 ILYDAETLIRKLLDMDLLEIRSVVKPKAGSATGAVEAPRGILYHHMETDEEGRIVKANCI 373
Query: 359 APGYAHL------------QAMEFLCKGHQLADVS-AILGSLDIVFGE 393
P + QA+E ++ ++ ++ S D
Sbjct: 374 IPTTQNNANIHHDLGALARQALEEGKNDQEIEKLATMLVRSYDPCISC 421
>gi|213400891|gb|ACJ47094.1| NADH dehydrogenase subunit D [Wolbachia endosymbiont of Nasonia
vitripennis]
Length = 208
Score = 183 bits (466), Expect = 3e-44, Method: Composition-based stats.
Identities = 122/211 (57%), Positives = 164/211 (77%), Gaps = 4/211 (1%)
Query: 102 LYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGV 161
L+ E+ RIL+HLLNV++QA+DVGA+TP LW FEEREK++ FYERASG+R HAAY RPGG+
Sbjct: 2 LFCELTRILNHLLNVSSQALDVGAMTPLLWLFEEREKILEFYERASGARFHAAYIRPGGI 61
Query: 162 HQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVM 221
D+P +L+EDI + + FP ++D+ +LLT NRI+KQR V I + ++ A WGFSG M
Sbjct: 62 AADVPEDLIEDIAKFIEQFPKYIDDVDELLTENRIWKQRTVGISAISIKQALDWGFSGPM 121
Query: 222 IRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL 281
+R +G AWDLRKSQPYE Y +LDFDIPIG++GDCYDRYLVRM E+R+S+ +++QC+ ++
Sbjct: 122 LRAAGLAWDLRKSQPYEIYDQLDFDIPIGQNGDCYDRYLVRMAEIRQSISLVKQCIEKM- 180
Query: 282 GKNKVGPVSASDPKIVPPKRADMKRSMESLI 312
G + D KI PP RA+MK+SME+LI
Sbjct: 181 ---PEGQIKTEDRKISPPSRAEMKKSMEALI 208
>gi|317485957|ref|ZP_07944812.1| nickel-dependent hydrogenase [Bilophila wadsworthia 3_1_6]
gi|316922730|gb|EFV43961.1| nickel-dependent hydrogenase [Bilophila wadsworthia 3_1_6]
Length = 479
Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats.
Identities = 68/482 (14%), Positives = 122/482 (25%), Gaps = 96/482 (19%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + TI P G L+ + ++ V G ++RG E ++ +
Sbjct: 1 MAEATQTKTTIAIDPVT-RIEGHLKAEVVVENGKVVDAKLTGG-MYRGFESILRGRHPRD 58
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A R+ V P A ++A+EK G +P G+ R L + SH+L+ A
Sbjct: 59 AAQIVQRICGVCPTAHATAASIALEKASGTAVPSNGRATRNLILGANYLQSHILHFYHLA 118
Query: 121 MDVGALTP---------------------------PLWGFEEREKLMVFYERASGSRMHA 153
P + E R G H
Sbjct: 119 GQDFIQGPDTAPFMPRYAKPDLRLPPAINAVGVDQYVEALEVRAVCHEMVALFGGRMPHV 178
Query: 154 AYFRPGGVHQDIPPELVEDIGCWCDSFPSALND-----------ISDLLTGNRIFKQRNV 202
GG + E + + + + L + +
Sbjct: 179 HGILAGGAAEIPTKEKLVEYAARFKKVRKFVEEKYLPVVYLVGSQYKDLGAFGQGYRNAL 238
Query: 203 NIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI------------- 249
+G L+D G + E F
Sbjct: 239 CVGVFPLDDEGKEFVFKAGAYQDGKDMPFDVKRVTEDVKFSWFADSTSGKPFTKGENVLE 298
Query: 250 --GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNK------------------VGPV 289
K + + + + E + R VN +G
Sbjct: 299 VDKKGAYSFVKAPLYNGKPMEVGPLARMWVNNKPISPIGQKLFKEYFGLDVKNFRDMGED 358
Query: 290 SASDPKIVPPKRAD----MKRSMESLIHHFKLYTEGYHVP---VGEVYAAVEAPKGEFGV 342
A RA+ M +E + + E + +P E + EAP+G
Sbjct: 359 LAFSLLGRHVARAEESYLMLDVVERFLKEVRPDEETFSMPVMKDSEGFGFTEAPRGSLMH 418
Query: 343 YLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLADVS------AILGSL 387
+ K +I + + A+E G + D+ ++ +
Sbjct: 419 FTKVR-NGKIDNYQIVSATLWNCAPRNDTGMRGALEEALIGVPVPDIENPVNIARLIRAF 477
Query: 388 DI 389
D
Sbjct: 478 DP 479
>gi|149174240|ref|ZP_01852867.1| nickel-dependent hydrogenase, large subunit [Planctomyces maris DSM
8797]
gi|148846785|gb|EDL61121.1| nickel-dependent hydrogenase, large subunit [Planctomyces maris DSM
8797]
Length = 430
Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats.
Identities = 61/416 (14%), Positives = 118/416 (28%), Gaps = 39/416 (9%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + + GE +E V I R E L+ + A R+ + P+ + +
Sbjct: 14 VEGEGGLFIRMSGETIEEVRLEIYEPPRLFEALLRGRPLEDAPDITARICGICPVAYQMS 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG------------ALT 127
A+E L + + + +R L I SH L++
Sbjct: 74 SVHALEAALKVTVSPEIRRLRRLLYCGEWIESHGLHMHLLHAPDFLGFESGLEMAKQFPD 133
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
G ++ + G +H GG ++ + + + +A +
Sbjct: 134 EVNRGLRLKKHGNQLVDLLGGRAIHPVNVCVGGFYRIPRRNEFQKLIPDFEWGLNAAKET 193
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ L G + + GVM G D+ + + ++
Sbjct: 194 TRWLAGFDFPEMESDCDFVSLSHPDEYPMNEGVMKSSLGDVIDVEQYEEEFEERQVPHST 253
Query: 248 PIGKHGDCYDRYLVRMMEMRESVK---IIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
+ R + R ++ + Q I+ +
Sbjct: 254 ALQAFRKSTGRPYLLGPLSRINLNRNQLFPQARKLADEIGWESVCRNPHKAIIARGLEIV 313
Query: 305 KRSMESL-----IHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
E+L H E Y G +A EAP+G D K I
Sbjct: 314 HAYEEALSILRDQHPAGKPRESYSPQAGTGKSATEAPRGTLYHRYDIDDQGKIVEACIVP 373
Query: 360 PGYAHLQAMEFLCK-------GHQLADVSA----ILGSLDIVFGE--------VDR 396
P + +E K G++ A+++ ++ + D +DR
Sbjct: 374 PTSQNQAQIEVDLKHVVAESIGNEEAELARKCENLVRAYDPCISCSTHFLKVTIDR 429
>gi|213400889|gb|ACJ47093.1| NADH dehydrogenase subunit D [Wolbachia endosymbiont of Nasonia
longicornis]
Length = 208
Score = 183 bits (464), Expect = 5e-44, Method: Composition-based stats.
Identities = 122/211 (57%), Positives = 164/211 (77%), Gaps = 4/211 (1%)
Query: 102 LYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGV 161
L+ E+ RIL+HLLNV++QA+DVGA+TP LW FEEREK++ FYERASG+R HAAY RPGG+
Sbjct: 2 LFCELTRILNHLLNVSSQALDVGAMTPLLWLFEEREKILEFYERASGARFHAAYIRPGGI 61
Query: 162 HQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVM 221
D+P +L+EDI + + FP ++D+ +LLT NRI+KQR V I + ++ A WGFSG M
Sbjct: 62 AADVPEDLIEDIAKFIEQFPKYIDDVDELLTENRIWKQRTVGISEISIKQALDWGFSGPM 121
Query: 222 IRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL 281
+R +G AWDLRKSQPYE Y +LDFDIPIG++GDCYDRYLVRM E+R+S+ +++QC+ ++
Sbjct: 122 LRAAGLAWDLRKSQPYEIYDQLDFDIPIGQNGDCYDRYLVRMAEIRQSISLVKQCIEKM- 180
Query: 282 GKNKVGPVSASDPKIVPPKRADMKRSMESLI 312
G + D KI PP RA+MK+SME+LI
Sbjct: 181 ---PEGQIKTEDRKISPPSRAEMKKSMEALI 208
>gi|302878802|ref|YP_003847366.1| nickel-dependent hydrogenase large subunit [Gallionella
capsiferriformans ES-2]
gi|302581591|gb|ADL55602.1| nickel-dependent hydrogenase large subunit [Gallionella
capsiferriformans ES-2]
Length = 493
Score = 183 bits (464), Expect = 5e-44, Method: Composition-based stats.
Identities = 62/440 (14%), Positives = 129/440 (29%), Gaps = 69/440 (15%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD + +V HI + RG EK I+ + + + RL + P++ +
Sbjct: 24 VEGHGKVTILLDDKNKIHQVRLHI-VEFRGFEKFIQGRPYWEVPVMVQRLCGICPVSHQL 82
Query: 79 AYALAVEKLLGIE-IPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV-------------- 123
A + A++ ++G + + +R L + SH L+
Sbjct: 83 AASKALDAIVGAKHPTPTAEKMRRLMHYGQILQSHALHFFHLCSPDLLFGFDSDISKRNI 142
Query: 124 -----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
G R+ A+G R+H PGGV++ + +++
Sbjct: 143 LGIAEKYPETAKRGILLRKFGQEVIRHAAGKRIHGTGSVPGGVNKSLSIAERDELLKDIY 202
Query: 179 SFPSALNDISDLLTGNRIFKQRNVN-IGTVKLEDAWGWGFSGVMIRG------------- 224
S + L+ N G + G G +
Sbjct: 203 QMVSWSREAVHLVKELHHKNPELYNSFGAFRANYMSMVGMDGSLDLYHGRLRARDDNGNI 262
Query: 225 --SGAAWDLR--------KSQPYECYSE---LDFDIPIGKHGDCYDRYLVRMMEMRESVK 271
G ++ K+ Y + + + + G + +
Sbjct: 263 LFDGVDYNHYSELIAEEVKNWSYMKFPYLKSMGAEKGWYRVGPLSRVQNCDFISTPLAEI 322
Query: 272 IIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGE--- 328
R+ + P+ +++ A M + H T + GE
Sbjct: 323 ERREFMAYSGVMPMHAPLGYHWARMIEMLHAA---EMIKDLLHDDDITGSDLMVTGERGF 379
Query: 329 -VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK--------GHQLAD 379
+EAP+G + D + C + + QAM + GH++ +
Sbjct: 380 EGVGVIEAPRGTLIHHYRVDENDLITMCNLIVSTTHNNQAMNEAVRRVAQQYLHGHEITE 439
Query: 380 -----VSAILGSLDIVFGEV 394
+ + + D
Sbjct: 440 GLLNHIEVAIRAFDPCLSCA 459
>gi|46201842|ref|ZP_00054236.2| COG0374: Ni,Fe-hydrogenase I large subunit [Magnetospirillum
magnetotacticum MS-1]
Length = 481
Score = 183 bits (464), Expect = 5e-44, Method: Composition-based stats.
Identities = 70/474 (14%), Positives = 124/474 (26%), Gaps = 96/474 (20%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
GP + G L + L++ V + L+RG E+++ + + R+ +
Sbjct: 10 VGPFN-RVEGDLEVTLDIQDGAVAEARVNAP-LYRGFEQILLGRPAADCLVIAPRICGIC 67
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLW- 131
++Q A A A+ L +P G L L HL + A +
Sbjct: 68 SVSQSVAAARALADLGQASMPDNGSLATNLILACENAADHLTHFMLFFAPDLARSCYSEH 127
Query: 132 --------------------GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
R + + +G H+ +PGGV + I P
Sbjct: 128 PWFQTARRRFAAGDGECARTLLPARARFLHLMGLLAGKWPHSLALQPGGVTKGIDPGEKI 187
Query: 172 DIGCWCDSFPSALNDI-------------------------------SDLLTGNRIFKQR 200
+ F AL L
Sbjct: 188 RLLSILAEFREALETHLFADSLESIAALNGIAALEAWADAAPFDRGDFRLFLHIARHLNF 247
Query: 201 NV---NIGTVKLEDAWGWGFSGVMIRG-----------SGAAWDLRKSQPYECYSELDFD 246
G ++G GV R A + +
Sbjct: 248 TGLGSGPGRFISSGSFGLFAPGVWDRDALTVFDPTQVTEDHAHSWMEGTTASPSAGKTIP 307
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL------GKNKVGPVSAS-DPKIVPP 299
P G + + ++ E + RQ V+ G V +++
Sbjct: 308 SPDKPEGYSWCKAPRLAGQVAEVGALARQMVDGHPLIRDLIKTRPGGSVQDRVVARLLEL 367
Query: 300 KRA--DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKI 357
R M+ + ++ + G VEA +G G ++ DG + +I
Sbjct: 368 ARLIPAMETWIRAIRPAEPFCFPPTDLGDGPGTGLVEAARGTLGHWIGLDG-GRIAHYQI 426
Query: 358 RAPGYAHLQ---------AMEFLCKG--------HQLADVSAILGSLDIVFGEV 394
AP + A+E G +A V ++ S D
Sbjct: 427 IAPTTWNFSPRDAQGNPGALEMALAGTPVLPGETTPVA-VQHVVRSFDPCMVCT 479
>gi|213584133|ref|ZP_03365959.1| formate hydrogenlyase subunit 5 [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
Length = 248
Score = 183 bits (464), Expect = 5e-44, Method: Composition-based stats.
Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 1/188 (0%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 61 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 120
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 121 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 180
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G + + F RE M E +G+R GG+ +D+ E +
Sbjct: 181 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKEDMIQTRQLAQQMRRD 240
Query: 184 LNDISDLL 191
+ ++ D+L
Sbjct: 241 VQELVDML 248
>gi|46202098|ref|ZP_00053777.2| COG3259: Coenzyme F420-reducing hydrogenase, alpha subunit
[Magnetospirillum magnetotacticum MS-1]
Length = 495
Score = 183 bits (464), Expect = 6e-44, Method: Composition-based stats.
Identities = 68/439 (15%), Positives = 132/439 (30%), Gaps = 67/439 (15%)
Query: 20 AHGVLRLILELDGEI-VERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD + V +V HI + RG EK IE + + + RL + P++
Sbjct: 23 VEGHGKVTILLDDDNQVHQVRLHI-VEFRGFEKFIEGRPYWEVPVLVQRLCGICPVSHHL 81
Query: 79 AYALAVEKL-LGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV-------------- 123
A + A++ + G + + IR L + SH L+ +
Sbjct: 82 AASKAMDMIVNGGILTPTAEKIRRLMHYGQMLQSHALHFFHLSSPDLLFGFDSDVAKRNI 141
Query: 124 -----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
G R+ SG R+H PGGV++ + E + + D
Sbjct: 142 VGVAAANPDVAKMGVLLRKFGQEVIRVTSGKRVHGTGSVPGGVNKSLTIEERDYLLKDID 201
Query: 179 SFPSALNDISDLLTG-NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSG----------A 227
+ D ++ G ++ G V G + G
Sbjct: 202 QMIAWSRDAVGIIKGLHKSNPALYDVFGAVPSTMMSLVDDKGDLDFYHGALRARDKDGEV 261
Query: 228 AWDLRKSQPY--------ECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIR----- 274
+D Q Y + +S + F + + + ++ +I
Sbjct: 262 IFDQVSYQGYNTLLTEGVKSWSYMKFPYITALGDEKGWYKVGPLARIQNCDRIPTPHAEA 321
Query: 275 ---QCVNRLLGKNKVGPVSASDPKIVPPKRADM---KRSMESLIHHFKLYTEGYHVPVGE 328
+ V K G + +++ A ++S I L EG E
Sbjct: 322 ERAEFVAYGGAKPMHGSLGFHWARMIEMLCAAETIKDLLLDSDIMGADLMAEGPRRE--E 379
Query: 329 VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK--------GHQLAD- 379
+EAP+G + + + + + AM + GH++ +
Sbjct: 380 GIGVIEAPRGTLFHHYRVNEDDLVTYANLIVSTTNNNTAMNVAVRDVAKNYLTGHEITEG 439
Query: 380 ----VSAILGSLDIVFGEV 394
+ + D
Sbjct: 440 LLNHIEVAIRCFDPCLSCA 458
>gi|71906621|ref|YP_284208.1| nickel-dependent hydrogenase, large subunit [Dechloromonas
aromatica RCB]
gi|71846242|gb|AAZ45738.1| NAD(P)-dependent nickel-iron dehydrogenase catalytic subunit
[Dechloromonas aromatica RCB]
Length = 487
Score = 182 bits (463), Expect = 6e-44, Method: Composition-based stats.
Identities = 66/453 (14%), Positives = 130/453 (28%), Gaps = 75/453 (16%)
Query: 16 QHPAA------------HGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
QHP G ++ + LD V +V HI + RG EK I+ + + +
Sbjct: 9 QHPETLRRVAIDPVSRVEGHGKVTILLDDQNKVHQVRLHI-VEFRGFEKFIQGRPYWEVP 67
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIE-IPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
RL + P++ A + A++ ++G + + + +R L + SH L+
Sbjct: 68 VMVQRLCGICPVSHHLAASKALDIIVGAKKLTPAAEKLRRLMHYGQMLQSHALHFFHLCS 127
Query: 122 DV-------------------GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVH 162
G R+ +G R+H PGGV+
Sbjct: 128 PDLLFGFDSDVTKRNIVGVAAAHPETAKRGVLLRKFGQEVIRVTAGKRVHGTGAVPGGVN 187
Query: 163 QDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVN-IGTVKLEDAWGWGFSGVM 221
+ + +++ D L+ N G + G +G +
Sbjct: 188 KSLTIAERDELLKDIYHIVQWSRDAVHLIQKVHTQDPGLYNSFGIFRSNFMSIVGHNGDL 247
Query: 222 IRGSG----------AAWDLRKSQPYECYSELDFDIPIGK-----------HGDCYDRYL 260
G +D Q Y+ Y E + HG L
Sbjct: 248 DFYHGTLRARDDNGKIIFDGVDYQQYDKYIEEEVRPWSYMKFPFFKSIGKEHGWYKVGPL 307
Query: 261 VRMMEMRE-----SVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA-DMKRSMESLIHH 314
R+ + + ++ V+ G P++ +++ A ++ + +
Sbjct: 308 ARVQNCNQISTPFAEHERKEFVDYAGGSPLHAPLAYHWTRMIEMLHAAEVIKELLHDDDL 367
Query: 315 FKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKG 374
E +EAP+G + D + + + QAM +
Sbjct: 368 LSDNLMVEGERQMEGVGVIEAPRGTLFHHYRVDENDLITMANLIVSTTNNNQAMNEAIRH 427
Query: 375 -------------HQLADVSAILGSLDIVFGEV 394
L + + + D
Sbjct: 428 VARRYLHGREVTEGLLNHIEVAIRAFDPCLSCA 460
>gi|144900804|emb|CAM77668.1| Nickel-dependent hydrogenase, large subunit [Magnetospirillum
gryphiswaldense MSR-1]
Length = 430
Score = 182 bits (463), Expect = 6e-44, Method: Composition-based stats.
Identities = 58/405 (14%), Positives = 119/405 (29%), Gaps = 30/405 (7%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L +++ I++ + I R E + + F + R+ + P+
Sbjct: 15 VEGEGSLHVKIRDGIIKELHFGIFEPPRFFEAFLRGRDFREVPDITARICGICPIAYLMG 74
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG------------ALT 127
+ A+E +LGI++ + +R L I SH L+V T
Sbjct: 75 ASQAMEDILGIQVTKPIRDLRRLVYCGEWIESHALHVYMLHAPDFLGLADALELAKVDRT 134
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
++ E G +H R GG ++ + +
Sbjct: 135 LVEKALRLKKIGNEILETIGGRAIHPVGLRVGGFYKAPSKRHLRALEENLKWAVETSIAT 194
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
L+ G + G +I SG + + + + + +
Sbjct: 195 VKLVGGFDFPDIQQDYNFMALHHADEYAIHEGRLITSSGLDFPVSQFLDHIEEEHVSWSN 254
Query: 248 P-IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
GK D ++ + + + + +GPV + + + + ++ +
Sbjct: 255 ALHGKPKDGLAHHVGPLARYNLNYAQLGKTAKAAAKAAGLGPVVKNPFQSIVVRAVELVQ 314
Query: 307 SMESLIHHFKLYTEG------YHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
E + + YTE V GE + EAP+G +I P
Sbjct: 315 VCEDALKIVQNYTEPDAPYVDAPVKAGEGHGCTEAPRGICYHRYRIHADGSVQDARIVPP 374
Query: 361 GYAHLQAMEFLCKG------HQLAD-----VSAILGSLDIVFGEV 394
+ + ME + H+ D + + D
Sbjct: 375 TAQNQKVMELDLRKVVQANLHKSDDEIKWRAEQAIRNYDPCISCA 419
>gi|323139689|ref|ZP_08074730.1| nickel-dependent hydrogenase large subunit [Methylocystis sp. ATCC
49242]
gi|322395068|gb|EFX97628.1| nickel-dependent hydrogenase large subunit [Methylocystis sp. ATCC
49242]
Length = 430
Score = 182 bits (463), Expect = 7e-44, Method: Composition-based stats.
Identities = 59/418 (14%), Positives = 116/418 (27%), Gaps = 43/418 (10%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + + V+R + I R E + + F + R+ + P+ + +
Sbjct: 14 VEGEGGLKVVVRDGKVQRAELKIFEPPRFFEAFLRGRDFAEVPDIVARICGICPVAYQMS 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG------------ALT 127
A+E LLG+ + + +R L I SH L++
Sbjct: 74 GVHALENLLGVTVDGPLRELRRLLYCGEWIESHTLHIYMLHAPDFLGYEGSIDMARDHGD 133
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
G + ++ + G +H R GG H+ + + A +
Sbjct: 134 VVRRGLQLKKAGNDILKLLGGREIHPINVRVGGFHRAPRKRELLPLAEKLKWARDAALET 193
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ + G ++ G + + +
Sbjct: 194 VRWTSTFDFPDRERDYTFVSLRHPQEYPFNEGRIVSNRGLDIPATEYDEHFEERHEEHST 253
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIR-------QCVNRLLGKNKVGPVSASDPKIVP-- 298
+ + R S+ R V LG P + + +
Sbjct: 254 ALHSRLRDNGDAYLVGPLARYSLNYDRLSPLAKQAAVEAGLGVICRNPFRSIVIRAIEVL 313
Query: 299 PKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
+ R +E+ + + E Y G YAA EAP+G + + +I
Sbjct: 314 YACDEALRIIENYDQPDRAFVE-YEPRAGVGYAATEAPRGLLYHRYRLEADGEIADAQIV 372
Query: 359 APGYAHLQAMEFLC---KGHQLADVS---------AILGSLDIVFGE--------VDR 396
P + ++E G L D+ + + D +DR
Sbjct: 373 PPTSQNQPSVEEDLTDFVGSFL-DLPKEELRHRCEQTVRNYDPCISCATHFLRLDIDR 429
>gi|217970651|ref|YP_002355885.1| nickel-dependent hydrogenase large subunit [Thauera sp. MZ1T]
gi|217507978|gb|ACK54989.1| nickel-dependent hydrogenase large subunit [Thauera sp. MZ1T]
Length = 488
Score = 182 bits (462), Expect = 8e-44, Method: Composition-based stats.
Identities = 65/441 (14%), Positives = 133/441 (30%), Gaps = 71/441 (16%)
Query: 20 AHGVLRLILELD-GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD V +V HI + RG E+ I+ + + + RL + P++
Sbjct: 26 VEGHGKVTILLDEDNKVHQVRLHI-VEFRGFERFIQGRPYWEVPVMVQRLCGICPVSHHL 84
Query: 79 AYALAVEKLLG-IEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG------------- 124
A + A++ ++G + +R L + SH L+ +
Sbjct: 85 AASKALDLVVGAARVTPTADKMRRLMHYGQILQSHALHFFHLSSPDLLFGFGSELGRRNI 144
Query: 125 ------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
G R+ +G R+H PGGV++ + + + +
Sbjct: 145 VGVAQQYPDIAKKGILLRKFGQEVIRLTAGKRVHGTGAVPGGVNRALSADERKLLLADAY 204
Query: 179 SFPSALNDISDLLTG-NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA----AWDLRK 233
+ D ++ ++ + + GTV+ G + G D R
Sbjct: 205 QMIAWSRDAVRIIKELHQQDRALYDHFGTVRSSFMGLVAPDGSLDLYHGVLRARDADGRI 264
Query: 234 SQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKI--------------------- 272
Y D I Y ++ E+
Sbjct: 265 LFDQVDYQTYDRLITEEVKPWSYMKFPYFTSMGPEAGWYKVGPLARVQNCDSIPTPFAEH 324
Query: 273 -IRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHF-----KLYTEGYHVPV 326
R+ V GK G ++ +++ A +++ L+H +L T G
Sbjct: 325 ERRELVAYAGGKPLHGSLAFHWARMIEMLFAA--ETIKDLLHDDDLSGTELMTSGERRR- 381
Query: 327 GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK--------GHQLA 378
E +EAP+G + + + + QAM + G ++
Sbjct: 382 -EGVGVIEAPRGTLFHHYQVGDDDLVTMANLIVSTTNNNQAMNTAVREVAKQYLHGQEIT 440
Query: 379 D-----VSAILGSLDIVFGEV 394
+ + + + D
Sbjct: 441 EGLLNHIEVAIRAFDPCLSCA 461
>gi|182677503|ref|YP_001831649.1| nickel-dependent hydrogenase large subunit [Beijerinckia indica
subsp. indica ATCC 9039]
gi|182633386|gb|ACB94160.1| nickel-dependent hydrogenase large subunit [Beijerinckia indica
subsp. indica ATCC 9039]
Length = 429
Score = 182 bits (462), Expect = 8e-44, Method: Composition-based stats.
Identities = 52/406 (12%), Positives = 105/406 (25%), Gaps = 34/406 (8%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L +E+ V I R E + + + + R+ + P+ + +
Sbjct: 14 VEGEGALDIEVHDGRVTSARLRIFEPPRFFEAFLRGRGYAETPDLVARICGICPIAYQMS 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP----------- 128
A+E G+ + + + +R L I SH L++ P
Sbjct: 74 AVHAIENAFGVTVSGQLRALRRLIYCGEWIESHALHIVMLHAPDFLGFPDGIRMASEQGD 133
Query: 129 -PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
G ++ G +H + GG ++ +E IG + + +
Sbjct: 134 AVRNGLALKKTGNALMRLMGGREIHPVNVKTGGFYRVPSRAELEPIGESLERARALAVGL 193
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
++ G ++ G D+ + ++
Sbjct: 194 VRWVSSFPFPDYERDYEFVALRHPDEYPFNEGRLVSNRGIDIDIADYETEFEERQVAHST 253
Query: 248 P----IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+ G L R + + Q + R G V I+
Sbjct: 254 ALHALTRRRGAYLVGPLARYALNFDRLPASVQALARGAGLPPVC--KNPFQSIIVRALEI 311
Query: 304 MKRSMESLIHHFKLYTE-----GYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
+ E+L G + EAP+G R +I
Sbjct: 312 VYACEEALKLIAAYEPPECAAVTVMPRAGTGFGCTEAPRGLLWHRYEFAPDGTIERARIV 371
Query: 359 APGYAHLQAMEF--LCKGHQL----ADVSA-----ILGSLDIVFGE 393
P + ++E + DV + + D
Sbjct: 372 PPTSQNQPSIEADLAAVASMILDQPDDVIRARCEQAIRNYDPCISC 417
>gi|20093618|ref|NP_613465.1| coenzyme F420-reducing hydrogenase, alpha subunit [Methanopyrus
kandleri AV19]
gi|19886484|gb|AAM01395.1| Coenzyme F420-reducing hydrogenase, alpha subunit [Methanopyrus
kandleri AV19]
Length = 434
Score = 182 bits (462), Expect = 8e-44, Method: Composition-based stats.
Identities = 67/420 (15%), Positives = 116/420 (27%), Gaps = 67/420 (15%)
Query: 16 QHPAA--HGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAP 73
HP G +I+E++ V V + L RG EK ++ + R+ +
Sbjct: 6 IHPLTRVEGHGEVIIEVEDGEVTDVKFAV-LAVRGFEKFVQGRPAEDVPYIVSRICGICQ 64
Query: 74 MNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA-------- 125
A AV+ E P G IR L I SH L+ A
Sbjct: 65 TAHHLAACKAVDACFDAEPPEGGHKIRWLMHIGNMIHSHALHFYFLAAPDYVVGPDADPL 124
Query: 126 -----------LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIG 174
E R E G +H PGGV + PE +D+
Sbjct: 125 QRNVVKIVKDDPEVGKIAIELRRYGQDIVEATGGKAIHPVTGIPGGVSSPVDPESRDDLL 184
Query: 175 CWCDSFPSALND--------ISDLLTGNR--IFKQRNVNIGTVKLEDAWGWGFSGVMIRG 224
+ + I + L R +G ++
Sbjct: 185 NRAEEMIEMAYEGAKVGIEAIKETLEEYREKHDIDLLETLGNIETYHMGLVSDGDKHEFY 244
Query: 225 SG----------------------------AAWDLRKSQPYECYSELDFDIPIGKHGDCY 256
G + K + D +G
Sbjct: 245 DGEVKVVDPNGEEVTRFEPQEYQDVIAERTIEYSYVKHPYLKDVGYPDGIYRVGPGARLN 304
Query: 257 DRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP--PKRADMKRSME-SLIH 313
++ +E + + V+ G+ ++ + ++V + K +E +I
Sbjct: 305 VCSEMKTERAQE---LYEEYVDEF-GECVNYSLTINWARLVELVAACEEAKMLLEDDVIT 360
Query: 314 HFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK 373
E Y GE VEAP+G + ++D + + ++ A+E K
Sbjct: 361 EEDECKEDYEPKAGEGVGIVEAPRGTLIHHYVTDDEGRVKEANLIVATTHNVPAIELALK 420
>gi|300087831|ref|YP_003758353.1| nickel-dependent hydrogenase large subunit [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299527564|gb|ADJ26032.1| nickel-dependent hydrogenase large subunit [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 480
Score = 182 bits (462), Expect = 9e-44, Method: Composition-based stats.
Identities = 55/442 (12%), Positives = 109/442 (24%), Gaps = 68/442 (15%)
Query: 20 AHGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ ++LD + V ++ L RG E+ + + R+ V P +
Sbjct: 12 IEGGAKITIKLDDDGNVADTQVNVLEL-RGFERFCVGRPVEEMPRITTRICGVCPWSHHL 70
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A A A + + G+ P G+ +R L + I + H+L+
Sbjct: 71 ASAKACDAVFGVTPPPAGRKLRELCNSIAYMEEHILHFYFLGGGDFIMGPDADYAVRNVF 130
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
+ R E +G +H PGG + + E + + +
Sbjct: 131 GIAQKLPDVARNVVKVRHMCAHMLEIIAGKSIHPTAAVPGGFSKPLTEEERKKLIPMAEE 190
Query: 180 FPSALNDISDLLTGN--RIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPY 237
D N + +G +K G M G + Y
Sbjct: 191 AFELAKFSIDYAKKNIFPAYIDAVKTVGVIKTGFLGTVKDDGTMDLYDGKLRMMDPEGNY 250
Query: 238 ECYSELDFDIPIGKHGDCYDRYLVR---------MMEMRESVKIIRQCVNRL-------- 280
E + D+ I +H + + M S + R+
Sbjct: 251 EEFEAKDYLDYITEHVEPWSYVKFPYNKKWGEFSMDPDNPSGIYRVNTLARMNVSDKLST 310
Query: 281 -------------LGKNKVGPVSASDPKIVPPKR--ADMKRSMESLIHHFKLYTEGYHVP 325
G+ + +++ +
Sbjct: 311 PLAQAELEEFRETFGRPAQATLLFHWARLIEILYNAEKTLELLNDPEITDTNTRVPVTPR 370
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK---GHQLAD--- 379
EAP+G +D + + + K + D
Sbjct: 371 AARGVGCTEAPRGTLIHDYTTDENGLVTSANLIVATCQNNAPINMSVKQAAKMLIKDGKY 430
Query: 380 -------VSAILGSLDIVFGEV 394
V + + D
Sbjct: 431 DQGILNTVEMTIRAYDPCLSCA 452
>gi|83310213|ref|YP_420477.1| Ni,Fe-hydrogenase I large subunit [Magnetospirillum magneticum
AMB-1]
gi|82945054|dbj|BAE49918.1| Ni,Fe-hydrogenase I large subunit [Magnetospirillum magneticum
AMB-1]
Length = 512
Score = 182 bits (462), Expect = 9e-44, Method: Composition-based stats.
Identities = 66/484 (13%), Positives = 126/484 (26%), Gaps = 113/484 (23%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L L LE+ +V G + RG E+L+ + L + R+ +
Sbjct: 14 VEGDLELRLEIADGMVVDA-WSAGTMFRGFERLLIGRGALDGLVVTPRICGICSTTHLMT 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL--------- 130
A A++ + G ++P G +R L + S + + A
Sbjct: 73 AAKALDAVAGAKVPDNGVRLRNLALMAEHVQSDVRQGILMFLVDFANPAYRAQPLYDEAV 132
Query: 131 ------------WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
E + ++ G H+++ PGG+ P + D
Sbjct: 133 RRYAPLAGEAVAEAVRETKHVVEIIAIIGGQWPHSSFMVPGGLSYAPPVAELLQCRHVLD 192
Query: 179 SFPSA------------------LNDISDLLTGNRIFKQRNVNI---------------- 204
F L + L + + +V
Sbjct: 193 GFRGWYERRILGCSLDRWRAVDSLEALDLWLEESAAHRDSDVGFLLRFGRTIGLDRLGGG 252
Query: 205 -------GTVKLEDAWGWGFSGVMIRGSGAAW-------------DLRKSQPYECYSE-- 242
G++ L G + SG A + + Y Y
Sbjct: 253 HGNFLSCGSLDLPAETAARGVGGHLVPSGFARGAVVEGFDPAAIAEHVAASWYAAYEGGR 312
Query: 243 -------LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR------LLGKNKVGPV 289
+ + + + E+ + V LL + +
Sbjct: 313 HPAEGETEPYASGEEGRRYSWVKAARYLGTPAETGPFAERIVAGDPLFTDLLRRQGPNAL 372
Query: 290 SASDPKIVPPK--RADMKRSMESLIH---HFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
+ ++ P M + +I H G +P G ++A +G G ++
Sbjct: 373 ARELARLTRPATLLPAMALWLGEVIASGGHDIYADPGP-IPDGAGIGMIQAARGALGHWI 431
Query: 345 ISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLAD------VSAILGSLDI 389
+ R +I P + E G +AD V ++ S D
Sbjct: 432 AIK-DGRIERYQIITPTVWNGSPRDSGGVRGPWEEALIGTPVADADNPVEVGHVIRSFDP 490
Query: 390 VFGE 393
Sbjct: 491 CLVC 494
>gi|41018391|sp|Q00407|VHUA_METVO RecName: Full=F420-non-reducing hydrogenase vhu subunit A
gi|1747408|emb|CAA43510.1| methylviologen-reducing hydrogenase subunit [Methanococcus voltae
PS]
Length = 420
Score = 182 bits (462), Expect = 9e-44, Method: Composition-based stats.
Identities = 63/400 (15%), Positives = 118/400 (29%), Gaps = 47/400 (11%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ ++LD V HI L RG E+ + + + R+ +
Sbjct: 12 LEGHGKVTIKLDDSGKPADVKLHITAL-RGFEQFVIGRPAEEVPRIVPRICGICQTAHHL 70
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A AV+ G +IP + R L I SH L+ A
Sbjct: 71 ASVKAVDAAWGAQIPSAAEKQRELMHLGNMIHSHALHFYYLAAPDFVLGPDADPAIRNIV 130
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
A R E G +H PGG+ + + E +++ D+
Sbjct: 131 GVIDAAPEVAKKAIAMRRVGQSMVEATGGKPIHPVTGIPGGLSKSMSEEKRDELLAEIDT 190
Query: 180 FPSALNDISDLL---------TGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWD 230
D DL+ T N + +G VK +G + + G+
Sbjct: 191 MIQYGQDGLDLMKSLNEKYLDTINSLGVIDTWYLGLVKDGKHNFYGDTLRFVSPDGSEKM 250
Query: 231 LRKSQPY----------ECYSELDFDIPIGKHGDCYDRYLVRMMEMRESV-----KIIRQ 275
K Y Y + ++ +G Y + M+ + +S+ + R+
Sbjct: 251 EFKPAEYLDYLGEHVVEHSYVKYPYNKKVGYPEGLYRVGPLAMINVCDSMSTPLAEEARK 310
Query: 276 CVNRLLGKNKVGPVSASDPKIVPP--KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAV 333
G+ ++ + +++ K +E G V
Sbjct: 311 EFAETFGRPANQSIAYNQARLIELLSACERAKELLEDPEIVSTDVKAEVEPKAGNGVGVV 370
Query: 334 EAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK 373
AP+G +D + + ++ ME +
Sbjct: 371 YAPRGTLFHNYETDDNGIVTKANMIVATTHNVPTMEKAIQ 410
>gi|290955599|ref|YP_003486781.1| nickel-binding protein [Streptomyces scabiei 87.22]
gi|260645125|emb|CBG68211.1| putative nickel-binding protein [Streptomyces scabiei 87.22]
Length = 427
Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats.
Identities = 55/415 (13%), Positives = 113/415 (27%), Gaps = 41/415 (9%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L L + +V I R E + + + + R+ + P+ + +
Sbjct: 1 MEGEGALRLSVHDGMVREARLDIYEPPRFFEAFLRGRAYTEPPDITARVCGICPVAYQMS 60
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG------------ALT 127
AVE G+ + + +R L I SH L+V
Sbjct: 61 ACAAVEDACGVTVDQGIRELRRLLYCGEWIESHTLHVYLLHAPDFLGRASAIELARTHRA 120
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
G ++ E G +H R GG H+ + + +
Sbjct: 121 EVERGLRLKKAGNSVMELLGGRAVHPVNVRLGGFHRAPTRSELRPLAEELRKALDDALET 180
Query: 188 SDLLTGNRIFKQRNVN--IGTVKLEDAWGWGFSGVMIRGSG--AAWDLRKSQPYECYSEL 243
+ G + R + G + ++R G ++ +R + +++
Sbjct: 181 VRWVAGFEFPEARVDADLFALAAPDTYAVEGGTPTVLRSDGTLRSFPVRDFTGHVTETQV 240
Query: 244 DFDIPIGKHGD-----CYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
+ D + S + LG + G V + + +
Sbjct: 241 PHSTALHARLDGRRHLTGALARFAVGGRLLSPVALEAARAAGLGDPREGAVCRNPFRTIL 300
Query: 299 PKRADMKRSMESLIHHFKLYTEGYH------VPVGEVYAAVEAPKGEFGVYLISDGGNKP 352
+ ++ ++E + + Y G + A EAP+G D
Sbjct: 301 VRAVEVVYAVEEALRIIEAYEPPPRPYTEVPPAAGVGHGATEAPRGLLYHRYTIDADGIL 360
Query: 353 YRCKIRAPGYAHLQAME--------FLCKGHQLADVSAI------LGSLDIVFGE 393
++ P + A+E G D + + D
Sbjct: 361 TDARLVPPTAQNQGAIEDDLLRVAQDAITGGDPDDAELTALCERAIRNHDPCISC 415
>gi|213400907|gb|ACJ47102.1| NADH dehydrogenase subunit D [Wolbachia endosymbiont of Coptotermes
acinaciformis]
Length = 208
Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats.
Identities = 122/211 (57%), Positives = 160/211 (75%), Gaps = 4/211 (1%)
Query: 102 LYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGV 161
L+ E+ RIL+HLLN+++QA+DVGA+TP LW FEEREK++ FYERASG+R HA Y RPGGV
Sbjct: 2 LFCELTRILNHLLNISSQALDVGAMTPLLWLFEEREKILAFYERASGARFHATYIRPGGV 61
Query: 162 HQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVM 221
DIP L+EDI + + FP ++D+ LLT NRI+KQR V I + ++ A WGFSG M
Sbjct: 62 AADIPEGLIEDIAKFIEQFPQYIDDVDGLLTENRIWKQRTVGISEISIKQALDWGFSGPM 121
Query: 222 IRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL 281
+R +G AWDLRKSQPYE Y +LDFDIPIG++GDCYDRYLVRM E+R+S+ +++QC+ ++
Sbjct: 122 LRAAGLAWDLRKSQPYEIYDQLDFDIPIGQNGDCYDRYLVRMAEIRQSISLVKQCIEKM- 180
Query: 282 GKNKVGPVSASDPKIVPPKRADMKRSMESLI 312
G V D K+ PP RA+MK SME+LI
Sbjct: 181 ---PEGSVKTEDRKVSPPPRAEMKTSMEALI 208
>gi|302342433|ref|YP_003806962.1| cytochrome-c3 hydrogenase [Desulfarculus baarsii DSM 2075]
gi|301639046|gb|ADK84368.1| Cytochrome-c3 hydrogenase [Desulfarculus baarsii DSM 2075]
Length = 500
Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats.
Identities = 76/488 (15%), Positives = 127/488 (26%), Gaps = 115/488 (23%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + LELDG V G + RG E ++ + L A R+ V P++ A
Sbjct: 13 IEGHLGIRLELDGGKVASAYCA-GEMFRGFENILRGRDPLDAQQITQRICGVCPISHGLA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILS---HLLNVTTQAM--------------- 121
LA E++ + G + R L I S H ++
Sbjct: 72 SILAQEQIYNPALTPNGVIARNLILGANYIQSHLIHFYQLSALDFVDVTAILGYHGADPA 131
Query: 122 -------------------------------------DVGALTPPLWGFEEREKLMVFYE 144
+VGAL L + R
Sbjct: 132 LNDLRDWVSGQRKAGAISPGAPFLPRYAGHYIQDAGLNVGALKHYLQALDMRALAHQAVA 191
Query: 145 RASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN-----DISDLLTGNRIFKQ 199
+G HA PGGV + + + + D ++ DI + T + Q
Sbjct: 192 IWAGKVPHATALAPGGVTEQVSAKKIAAYAAIIDQLRVFIDTAYLPDILAVATAFPEYFQ 251
Query: 200 RNVNIGTVKLEDAWGW--GFSGVMIRGSGA---------------AWDLRKSQPYECYSE 242
G + GF R S
Sbjct: 252 HGAGPGDFMAYGVFPQEDGFLLPAGRVSHGQAASLDLTKITEQTTHSLFSSPSGLHPTKG 311
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKI-------------IRQCVNRLLGKNKVGP- 288
P + + +E + +R+ V++LLG P
Sbjct: 312 QTIPAPRKSGAYSWLKAPRYDNRPQEVGPLARILVAYQAGQAQVREMVDQLLGALGRQPA 371
Query: 289 -----VSASDPKIVPPKR--ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFG 341
+ + + K R + L Y + G +EAP+G G
Sbjct: 372 ELNSAMGRHAARAIECKLVAEACARWINQLKPGEPTYADFDVPASGAGAGLIEAPRGALG 431
Query: 342 VYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLAD------VSAILGS 386
++ + + P + +E +G +AD + I+ S
Sbjct: 432 HWIEI-ADYRIANYQCVVPTTWNCSPRDDAGVPGPVESSLEGLPVADPQNPLEAARIVRS 490
Query: 387 LDIVFGEV 394
D
Sbjct: 491 FDPCLACA 498
>gi|213400911|gb|ACJ47104.1| NADH dehydrogenase subunit D [Wolbachia endosymbiont of
Zootermopsis nevadensis]
Length = 205
Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats.
Identities = 121/209 (57%), Positives = 160/209 (76%), Gaps = 4/209 (1%)
Query: 104 SEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQ 163
E+ RIL+HLLNV++QA+DVGA+TP LW FEEREK++ FYERASG+R HAAY RPGG+
Sbjct: 1 CELTRILNHLLNVSSQALDVGAMTPLLWLFEEREKILEFYERASGARFHAAYIRPGGIAA 60
Query: 164 DIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIR 223
D+P L+ED+ + + FP ++D+++LLT NRI+KQR V I + + A WGFSG M+R
Sbjct: 61 DVPEGLIEDVAKFIEQFPKYIDDVNELLTENRIWKQRTVGISEISVAQALDWGFSGPMLR 120
Query: 224 GSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGK 283
+G AWDLRKSQPYE Y +LDFDIPIG++GDCYDRYLVRM E+R+S+ +++QC+ +L
Sbjct: 121 AAGLAWDLRKSQPYEIYDQLDFDIPIGQNGDCYDRYLVRMAEIRQSINLVKQCIEKL--- 177
Query: 284 NKVGPVSASDPKIVPPKRADMKRSMESLI 312
GP+ D KI PP R +MK SME+LI
Sbjct: 178 -PEGPIKTEDRKISPPPREEMKISMEALI 205
>gi|219666869|ref|YP_002457304.1| nickel-dependent hydrogenase large subunit [Desulfitobacterium
hafniense DCB-2]
gi|219537129|gb|ACL18868.1| nickel-dependent hydrogenase large subunit [Desulfitobacterium
hafniense DCB-2]
Length = 465
Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats.
Identities = 56/439 (12%), Positives = 120/439 (27%), Gaps = 68/439 (15%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
H + + L+ +++ L+RG E+++E + Y R+ + A
Sbjct: 13 IHNPMLVEAYLENGVIQEAFISD-TLYRGFEQILEGRPAFDMPYYTQRICGICSSVHAVA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL------------- 126
A AVE+ LG+ +P G + R L + +H+ + +M
Sbjct: 72 AAFAVEQALGMTVPSNGLIQRNLIMGSDFLQNHIRHFYLMSMPDYFKGPDIPPFTPHLEG 131
Query: 127 -------------TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDI 173
E + G H PGG + + +
Sbjct: 132 DIRFNTEENQRMTEHYFQAVEISRDAHAAFGVFGGKAPHGHGIVPGGCTMHVDADKINRY 191
Query: 174 GCWCDSFPS-----ALNDISDLLTGNRIFKQRNVN------IGTVKLEDAWGWGFSGVMI 222
+ + DI L+ + +G D G+++
Sbjct: 192 RGYLIKILEFINNVMIPDIELLVKRYPEYVHLGKGNGSFLSVGGFTQPDGGTLFPHGIVL 251
Query: 223 RGSGAAWDLR------------KSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESV 270
+D R + P + + G + + E
Sbjct: 252 EDKHQPFDDRLILEEVTTSWYKPTPPAHPWQGITEPDKSQPQGYTWVKAPRYQGHALEVG 311
Query: 271 KIIRQCVNRLLGKNKVGPVSASDPKIVPPKR--ADMKRSMESLIHHFKLYTEGYHVPVGE 328
+ R + + G + +++ K+ +E L+ + G
Sbjct: 312 PLARAVIAK-EKIIGYGTLGRHWSRVMETKKIAEAAMIWLERLVPGAETLNTKVQQESGM 370
Query: 329 VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFL---------CKGHQL-- 377
VEA +G G ++ + +I P + + + +G +
Sbjct: 371 GIGYVEAMRGTLGHWVKI-EKGRVKHYQIITPSTWNFSSRDEAGNCSVGELSIRGLTIKH 429
Query: 378 ---ADVSAILGSLDIVFGE 393
+ ++ S D F
Sbjct: 430 PELKEAGRVIRSFDPCFSC 448
>gi|307153303|ref|YP_003888687.1| nickel-dependent hydrogenase large subunit [Cyanothece sp. PCC
7822]
gi|306983531|gb|ADN15412.1| nickel-dependent hydrogenase large subunit [Cyanothece sp. PCC
7822]
Length = 474
Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats.
Identities = 62/435 (14%), Positives = 114/435 (26%), Gaps = 62/435 (14%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD VE H+ + +RG EK E + + R+ + P++
Sbjct: 13 IEGHAKISIFLDDAGEVEDARFHV-VEYRGFEKFCEGRPMWEMSGITARICGICPVSHLL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A +K+L ++IP G+ +R L + SH L+ +
Sbjct: 72 CAAKTGDKILAVQIPPAGEKLRRLMNLAQITQSHALSFFHLSSPDFLLGWDSDPAQRNVF 131
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ E ++H A+ PGGV + E + I
Sbjct: 132 GLIAADPDLARSGIRLRQFGQQVIELLGAKKIHPAWAVPGGVRHPLSEEGRQWIRDRLPE 191
Query: 180 FPSALNDISDLLTG-NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAW--------- 229
L +L + G G +G G
Sbjct: 192 SRDTLYVALNLFKRLLDNLETEVKTFGEFPSLFMGLVGKNGEWEHYGGHIRFTDSQGNIV 251
Query: 230 --------------DLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQ 275
+ + Y + + + + + R+
Sbjct: 252 ADNLSEDNYQDFIGESVEKWSYLKFPYYKPMGYPDGIYRVGPLARLNICSHFGTPEADRE 311
Query: 276 CVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVG----EVYA 331
V S + +E L+ + + G E
Sbjct: 312 LQEYRDRAGGVATSSFFYHYARLIEILGALERIERLVEDPDIISPRTRAEAGINNLEGIG 371
Query: 332 AVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFL--------CKGHQLAD---- 379
EAP+G + + D + + + AM G Q+A+
Sbjct: 372 VSEAPRGTLFHHYLVDENGLIQKVNLIIATGNNNLAMNKTVTQIAKHYIHGDQIAEGMLN 431
Query: 380 -VSAILGSLDIVFGE 393
V A + D
Sbjct: 432 RVEAGIRCYDPCLSC 446
>gi|261402832|ref|YP_003247056.1| nickel-dependent hydrogenase large subunit [Methanocaldococcus
vulcanius M7]
gi|261369825|gb|ACX72574.1| nickel-dependent hydrogenase large subunit [Methanocaldococcus
vulcanius M7]
Length = 479
Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats.
Identities = 60/439 (13%), Positives = 127/439 (28%), Gaps = 68/439 (15%)
Query: 20 AHGVLRLILELD-GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + D +++V H+ + RG EK +E + A Y R+ + ++
Sbjct: 13 VEGHGKITISFDENGNLDKVHFHVVEV-RGFEKFLEGRYIEDAPIYTPRICGICQVSHHL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV--------------- 123
A A AV+ + ++IP +L+R L + I SH L+ A
Sbjct: 72 ASAKAVDMIFNVKIPETAELLRNLMHQGATIHSHALHFYFLAAPDLMFPTTDDILKRNIL 131
Query: 124 ----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
E R+ + G +H A GG + + E + + D
Sbjct: 132 GIAKEHPEVVKEAIELRKIGQTIVKTVGGRAIHPATAVVGGQSKPLTEEERDKLLKLSDR 191
Query: 180 FPSALNDISDL-----------------LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMI 222
++ + N + G +
Sbjct: 192 AIELAEKSIEIGKKLIENIKENNLLDIGYFESYHMGMVNKGTHELYDGMLRVVNPKGKVE 251
Query: 223 RG----SGAAWDLRKSQPYE----CYSELDFDIPIGKHGDCYDRYLVRMMEM-RESVKII 273
+ + +PY Y + + R V + K
Sbjct: 252 YEFNPKDYLQYIAEEVRPYSYLKFPYLKDKGPEDGIYRVNSLSRLNVSDKMATPLAQKYY 311
Query: 274 RQCVNRLLGKNKVGPVSASDPKIVPP--KRADMKRSMESLIHHFKLYTEGYHVPVGEVYA 331
++ ++ GK P+ + +++ +K +E+ + GE
Sbjct: 312 KEFIDTF-GKPCHYPILFNYARLIEILSSAEKVKELLENDKIVDTDIRAEPNEITGEGVG 370
Query: 332 AVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLAD------------ 379
VEAP+G + +D + + AM+ + ++A+
Sbjct: 371 CVEAPRGTLIHHFKTDEQGIITDVNLIVATVQNNPAMDIGVR--KVAEKYIKNPEDAKPN 428
Query: 380 ----VSAILGSLDIVFGEV 394
+ ++ + D
Sbjct: 429 VLNYMEMVIRAYDPCLSCA 447
>gi|213400893|gb|ACJ47095.1| NADH dehydrogenase subunit D [Wolbachia endosymbiont of
Armadillidium vulgare]
Length = 208
Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats.
Identities = 123/211 (58%), Positives = 161/211 (76%), Gaps = 4/211 (1%)
Query: 102 LYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGV 161
L+ E+ RIL+HLLNV++QA+DVGA+TP LW FEEREK++ FYERASG+R HAAY RPGGV
Sbjct: 2 LFCELTRILNHLLNVSSQALDVGAMTPLLWLFEEREKILEFYERASGARFHAAYIRPGGV 61
Query: 162 HQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVM 221
DIP L+EDI + + FP ++D+ +LLT NRI+KQR V I + ++ A WGFSG M
Sbjct: 62 AADIPEGLIEDIAKFIEQFPKYIDDVDELLTENRIWKQRTVGISEISIKQALDWGFSGPM 121
Query: 222 IRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL 281
+R +G AWDLRKSQ YE Y LDFDIPIG++GDCYDRYLVRM E+R+S+ +++QC+ ++
Sbjct: 122 LRAAGLAWDLRKSQSYEIYDWLDFDIPIGQNGDCYDRYLVRMAEIRQSISLVKQCIEKM- 180
Query: 282 GKNKVGPVSASDPKIVPPKRADMKRSMESLI 312
GP+ D KI PP RA+MK SME++I
Sbjct: 181 ---PEGPIKTEDRKISPPPRAEMKTSMEAMI 208
>gi|297619791|ref|YP_003707896.1| nickel-dependent hydrogenase large subunit [Methanococcus voltae
A3]
gi|297378768|gb|ADI36923.1| nickel-dependent hydrogenase large subunit [Methanococcus voltae
A3]
Length = 420
Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats.
Identities = 63/400 (15%), Positives = 116/400 (29%), Gaps = 47/400 (11%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ ++LD V HI L RG E+ + + + R+ +
Sbjct: 12 LEGHGKVTIKLDDSGKPTDVKLHITAL-RGFEQFVIGRPAEEVPRIVPRICGICQTAHHL 70
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A AV+ G +IP + R L I SH L+ A
Sbjct: 71 ASVKAVDAAWGAQIPSAAEKQRELMHIGNMIHSHALHFYYLAAPDFVLGPDADPAIRNVI 130
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
A R E G +H PGG+ + + E +++ D+
Sbjct: 131 GVIDAAPEVAKKAIALRRVGQSMVEATGGKAIHPVTAIPGGLSKSLSEEKRDELLAEIDT 190
Query: 180 FPSALNDISDLL---------TGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWD 230
D DL+ T N + +G VK +G + + G+
Sbjct: 191 MIQYGQDGLDLMKSLNEKYLDTINTLGVIDTWYLGLVKDGKHNFYGDTLRFVSPDGSEKI 250
Query: 231 LRKSQPY----------ECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVK-----IIRQ 275
K Y Y + ++ +G Y + M+ +S+ R+
Sbjct: 251 DFKPADYLDYLAEHVVEHNYVKYPYNKKVGYPEGLYRVGPLAMINACDSMPTPLAEEARK 310
Query: 276 CVNRLLGKNKVGPVSASDPKIVPP--KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAV 333
G+ ++ + +++ K +E G V
Sbjct: 311 EFAETFGRPANQSIAYNQARLIELLSACERAKELLEDPEIVSTDVKAEVEPKAGNGVGVV 370
Query: 334 EAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK 373
AP+G +D + + ++ ME +
Sbjct: 371 YAPRGTLFHNYETDDNGIVTKANMIVATTHNVPTMEKAIQ 410
>gi|149040661|gb|EDL94618.1| rCG20129, isoform CRA_c [Rattus norvegicus]
Length = 127
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 83/131 (63%), Positives = 104/131 (79%), Gaps = 4/131 (3%)
Query: 266 MRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP 325
MR+S++II QC+N++ G + D K+ PPKRA+MK SMESLIHHFKLYTEGY VP
Sbjct: 1 MRQSLRIIEQCLNKM----PPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVP 56
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILG 385
G Y A+EAPKGEFGVYL+SDG ++PYRCKI+APG+AHL ++ + KGH LADV AI+G
Sbjct: 57 PGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIG 116
Query: 386 SLDIVFGEVDR 396
+ DIVFGE+DR
Sbjct: 117 TQDIVFGEIDR 127
>gi|78188226|ref|YP_378564.1| hydrogenase/sulfur reductase, alpha subunit [Chlorobium
chlorochromatii CaD3]
gi|78170425|gb|ABB27521.1| hydrogenase/sulfur reductase, alpha subunit [Chlorobium
chlorochromatii CaD3]
Length = 426
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 64/421 (15%), Positives = 113/421 (26%), Gaps = 36/421 (8%)
Query: 7 RSFTINFGPQHPA-AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
R+ IN H G + + + + I R E +++ + QA
Sbjct: 5 RNLDINI--HHLTRVEGHANIHIHVKNGELVEAQWAIIETPRFFEVMLKGMSAEQAPFLT 62
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG- 124
R+ + ++ A A+E+ + I P +++R L + SH L++ A+
Sbjct: 63 SRICGICSISHSLANIRALERAMQITPPPLAEVVRRLAMHGETLQSHALHLFFLAVPDFA 122
Query: 125 -----------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDI 173
G + +E A+G H GG+ + + ++++
Sbjct: 123 GLPSVLPLMESHPQVVRAGLQLKELGNSISIAAAGRATHPVSLVLGGITKAPELQQLKEL 182
Query: 174 GCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRK 233
AL I G ++ G D
Sbjct: 183 LTMTQERKLALAQAVTFFEELHIPNFTRETEFISLCNGVTYPAIGGQLVSSDGITRDEND 242
Query: 234 SQPYECYSELDFDIPIGK---HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVS 290
DF L R + Q V G V
Sbjct: 243 YLLMTNEYTRDFSTSKFTRLSRNSSAAGALARFNNNYHLLHPNAQAVAARFGLQPVCHNP 302
Query: 291 ASDPKIVPPKRADMKRSMESLIH-----HFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLI 345
+ + + E LI + Y G AVEAP+G Y+
Sbjct: 303 FMNNIAQLVECVHILEDAEELIGMVMDMKGEETKCHYTPQAGAATGAVEAPRGILYHYME 362
Query: 346 SDGGNKPYRCKIRAPGYAH-------LQAM-EFLCK-----GHQLADVSAILGSLDIVFG 392
++ R P + LQA+ L + G ++ S D
Sbjct: 363 TNDEGMVVRADCIIPTTQNNGNIYDDLQALAAELLREGKCDGEIQLQCEMLVRSYDPCIS 422
Query: 393 E 393
Sbjct: 423 C 423
>gi|260428748|ref|ZP_05782725.1| hydrogen:quinone oxidoreductase [Citreicella sp. SE45]
gi|260419371|gb|EEX12624.1| hydrogen:quinone oxidoreductase [Citreicella sp. SE45]
Length = 476
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 69/470 (14%), Positives = 131/470 (27%), Gaps = 91/470 (19%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
GP + G L + L++ V + L RG E ++ K A+ R+ +
Sbjct: 8 VGPFN-RVEGDLEIRLDVRDGRVTAAYANSP-LFRGFEMMMLGKDPRDALTVTPRICGIC 65
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP--- 129
++Q A ALA+ ++ G +P +G L + + + HL + M A
Sbjct: 66 SISQSKAAALALGQVSGASMPPQGALAAAILHGVENLCDHLSHFALFFMPDFARPGYAGR 125
Query: 130 ------------------LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
E R +L G H +PGGV +
Sbjct: 126 AWHDRAVARYTAQEGSAVRPLIEARARLFHIVGLLGGKWPHTLAIQPGGVTRAPDARDRI 185
Query: 172 DIGCWCDSFPSALND-----ISDLLTGNRIFKQRNVNIGT-------VKLEDAWGWGFSG 219
I + L + + + G + + + G G
Sbjct: 186 RIQTTLRAARRVLEFELFGGALEAFSALSSIEALEGWAGGDVALFSEISADLSLGTLGVG 245
Query: 220 VMIRGSGAA-------------WDLRKSQPYECYSELDFDIPIGKHG------------- 253
S A W+ + P++ + ++ G
Sbjct: 246 PQRYLSCGAYPLAEGRVTKAGVWEDGRVDPFDPAAIVEDVSHAWMLGEGAHPSQGVTVPD 305
Query: 254 -------DCYDRYLVRMMEMRESVKIIRQCVNRLLGK----NKVGPVSASDPKIVPPKR- 301
+ + E + RQ V+ + G + +++ R
Sbjct: 306 EDMAAPAYSWCKAPRLGGRPVEVGALARQVVDGHPLALALAAEGGVRARIAGRLLEIARL 365
Query: 302 -ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
++ +L + G G VEA +G G ++ S G + +I AP
Sbjct: 366 VIWLEAWAAALDPSARFMDTGPAPRDGAGVGLVEAARGTLGHWI-SCAGGRVGGYQIVAP 424
Query: 361 GYAHLQ---------AMEFLCKGHQLAD-------VSAILGSLDIVFGEV 394
+ +E G + + V ++ S D
Sbjct: 425 TTWNFSPRDGGGVPGPVEAALIGAPVGEDERTPVAVQHVVRSFDPCMVCT 474
>gi|171058143|ref|YP_001790492.1| nickel-dependent hydrogenase large subunit [Leptothrix cholodnii
SP-6]
gi|170775588|gb|ACB33727.1| nickel-dependent hydrogenase large subunit [Leptothrix cholodnii
SP-6]
Length = 504
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 63/442 (14%), Positives = 126/442 (28%), Gaps = 73/442 (16%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD V++V HI + RG EK IE + + + RL + P++
Sbjct: 25 VEGHGKVTILLDDHNRVQQVRLHI-VEFRGFEKFIEGRPYWEVPVMVQRLCGICPVSHHL 83
Query: 79 AYALAVEKLLGIEIPIR-GQLIRVLYSEIGRILSHLLNVTTQAMDV-------------- 123
A A A++ +LG + R + IR L + SH L+ +
Sbjct: 84 AAAKAMDVVLGTQPITRSAEKIRRLMHYGQTMQSHALHFFHLSSPDLLFGFDSAVNLRNI 143
Query: 124 -----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
G R+ +G R+H PGG+++ + + + +
Sbjct: 144 VGVVQAHPDVAKKGVLLRKFGQEVIRVTAGKRVHGTGAIPGGMNKHVSRADRDMLRRDVE 203
Query: 179 SFPSALNDISDLLTG-NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA---------- 227
D + + + G+ + G M G
Sbjct: 204 QMIEWAQDAVTIAKQLHAQNPALYDSFGSFRSNMLSLVRADGAMDLYDGVLRARDAAGQI 263
Query: 228 -------------------AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRE 268
W K +G + +
Sbjct: 264 IIDGASDQSYLDLIEEEVRPWTYMKFPHLRSLGREAGWYRVGPLARVQNCDFIPSPLAE- 322
Query: 269 SVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR-ADMKRSM--ESLIHHFKLYTEGYHVP 325
R+ ++ G+ ++ +++ ++ R + + I L G
Sbjct: 323 --AERREFIDWGKGEPIHATLAYHWARMIEVLHSVEVIRDLLDDPDILGGDLMATGTRR- 379
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK--------GHQL 377
GE +EAP+G + + C + + QAM + G +L
Sbjct: 380 -GEGVGIIEAPRGTLIHHYKVGDDDLVTLCNLIVSTTHNNQAMNEAVRSVARQYLDGQEL 438
Query: 378 AD-----VSAILGSLDIVFGEV 394
+ + + + D
Sbjct: 439 TEGLLNHIEVAIRAYDPCLSCA 460
>gi|317486280|ref|ZP_07945112.1| nickel-dependent hydrogenase [Bilophila wadsworthia 3_1_6]
gi|316922450|gb|EFV43704.1| nickel-dependent hydrogenase [Bilophila wadsworthia 3_1_6]
Length = 474
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 60/463 (12%), Positives = 122/463 (26%), Gaps = 95/463 (20%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L++ ++++ V G + RG E ++ + A R+ V P+ A
Sbjct: 14 LEGHLKVEVQVEDGKVADA-WITGGMFRGFEAILRGRNPRDASQIVQRICGVCPVAHATA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP----------- 128
+LA+E + G+E+P G++ R L + S++L+ P
Sbjct: 73 SSLAIEAVCGVEVPENGRIARNLMLAGNYLQSNILHFYHLGGQDYFHGPDTVPFIPRYRN 132
Query: 129 ----------------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVED 172
+ E R+ G H GG Q E + +
Sbjct: 133 PDLRLSEEQNTLAMDEYIEALEVRQVCHQLVALFGGRMPHLQGILGGGAAQIPDRETILE 192
Query: 173 IGCWCDSFPSALN------------DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGV 220
+ D+ +K + + +G
Sbjct: 193 YAARMKQVRKFVENRYLPLVYTIASRYMDMFEMAHGYKNALCVGVFPLAKKGEQFFNAGA 252
Query: 221 MIRGSGAAWDLRKSQPYECYSELDF-------------DIPIGKHGDCYDRYLVRMMEMR 267
I G +D + YS + + + + +
Sbjct: 253 YINGRDEPFDGNRILEDVRYSWFEPAPSGTPLQKSESNPQVDKEGAYSFIKAPLYAGHRV 312
Query: 268 ESVKIIRQCVN-----------------------RLLGKNKVGPVSASDPKIVPPKR--- 301
E + R +N R +G++ + + V
Sbjct: 313 EVGPLARMWINDKPLSPIGQRFFADMFGVRAETFRQIGEDPAFSIMGRNVARVEEVYQTL 372
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
++ + L + + GE EAP+G Y+ + A
Sbjct: 373 GMIEYWLHELEPGAQTFALPEVPQAGEGIGFTEAPRGALCHYMRVK-NGVIDDYAVVAAS 431
Query: 362 YAHLQ---------AMEFLCKGHQLA------DVSAILGSLDI 389
+ A+E G + +V ++ + D
Sbjct: 432 MWNCSPRDDAGKRGAVEEALIGVPVPEVDSPVNVGRVIRAYDP 474
>gi|3420957|gb|AAC32033.1| HupV [Rhodobacter capsulatus]
Length = 476
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 79/469 (16%), Positives = 133/469 (28%), Gaps = 90/469 (19%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
GP + G L + L+L G V + L+RG E+++E + A+ R+ +
Sbjct: 9 VGPFN-RVEGDLEVHLDLAGGRVAAARVNSP-LYRGFERMLEGRAPSDALTLTPRICGIC 66
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP--- 129
++Q A A A+ +G+ +G + L + + HL++ M
Sbjct: 67 SISQSAAAARALGAAMGLAPTDQGAWLAALIHAVENVSDHLVHFNLFFMPDFTRPCYAAR 126
Query: 130 ------------------LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
R LM +G H +PGGV + P +
Sbjct: 127 PWYPRAVAPFAAIEGQAGRAAIAARSGLMHILGLMAGKWPHTLALQPGGVTRTPGPRDIL 186
Query: 172 DIGCWCDSFPSALND---------------ISDLLTGNRIFKQRNVNIGTVKLEDAWGWG 216
I F L ++DLL +R V I D G G
Sbjct: 187 RIQTELRMFRKHLETQVFGGRLEDFVVLASVADLLRWDRGDAGLFVEIAADLDLDRLGRG 246
Query: 217 F-----SGVMIRGSGAAWDLRKSQ-------------------PYECYSELDFDIPIGKH 252
G G + Q + FD
Sbjct: 247 AGRYLSFGAYPLAEGHGFAPGLWQAGAVTAPDMAAIAEDLSHAWMLGGTAHPFDGVTRPD 306
Query: 253 ------GDCYDRYLVRMMEMRESVKIIRQCVNRLL---GKNKVGPVSASDPKIVPPKRAD 303
+ + + E + RQ ++ G ++ +++ R
Sbjct: 307 ETMREGAYSWCKAPRLGGQPVEVGALARQLIDGHPLAVDLAGGGVLARVAGRLLELARTQ 366
Query: 304 --MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
M+ +L +G G VEA +G G +L G K +I AP
Sbjct: 367 LLMETWAAALDPGAVFMVQGRMPETGAGAGLVEAARGSLGHWLRI-EGGKIASYQIIAPT 425
Query: 362 YAHLQ---------AMEFLCKGHQLA---D----VSAILGSLDIVFGEV 394
+ +E G +A D V ++ S D
Sbjct: 426 TWNFSPRDSAGVPGPLEAALVGAPVAPGEDSPVAVQHVVRSFDPCMVCT 474
>gi|220908063|ref|YP_002483374.1| Coenzyme F420 hydrogenase [Cyanothece sp. PCC 7425]
gi|219864674|gb|ACL45013.1| Coenzyme F420 hydrogenase [Cyanothece sp. PCC 7425]
Length = 433
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 57/411 (13%), Positives = 112/411 (27%), Gaps = 46/411 (11%)
Query: 28 LELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKL 87
+++ V V I R E + + + +A R+ + P+ + A+E +
Sbjct: 22 VQIRDNRVREVKLKIFEPPRFFEAFLRGRQYSEAPDITSRICGICPIAYMMSAVQAMEDI 81
Query: 88 LGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG------------ALTPPLWGFEE 135
LG+ + + +R L I SH L++ G
Sbjct: 82 LGVAVAGGMRDLRRLLYCGEWIESHALHIFMLHAPDFLGYDSVIAMAGDYPDLVQRGLRL 141
Query: 136 REKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNR 195
++ G +H R GG ++ + + + + +A + +
Sbjct: 142 KKIGNQIISLIGGRAIHPINVRVGGFYKLPSRQDLHSLVADLEWAVAAAAETVRWVAAFP 201
Query: 196 IFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG----- 250
G ++ G + Q Y+ E
Sbjct: 202 FPDFAPDYEFVALHHGEEYPMNQGRLVSNKGLDIPI--HQFYDQIEEQHRPHSTALQAQL 259
Query: 251 -KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
+ G+ + L R E + Q V + +G + I+ M + E
Sbjct: 260 KERGNYFLGPLARFNLNFEQLTPRTQAVAQSVGMTPLC--RNPFKSIIARSLEVMFAAEE 317
Query: 310 SLIHHFKLYTEG-----YHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
+L Y V G + EAP+G Y D +I P +
Sbjct: 318 ALRLIDSYIPPAQSVVDYTVRAGCGHGCTEAPRGSLYHYYQIDQQGDILAAQIAPPTAQN 377
Query: 365 LQAMEFLC-----------KGHQLADVSAILGSLDIVFGE--------VDR 396
+E + + ++ + D VDR
Sbjct: 378 QSTIEQDLWQFVEEHIDLPENQLRSQCEQVIRNYDPCISCSTHFLKLEVDR 428
>gi|294676322|ref|YP_003576937.1| uptake hydrogenase large subunit [Rhodobacter capsulatus SB 1003]
gi|294475142|gb|ADE84530.1| uptake hydrogenase, large subunit [Rhodobacter capsulatus SB 1003]
Length = 476
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 79/469 (16%), Positives = 133/469 (28%), Gaps = 90/469 (19%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
GP + G L + L+L G V + L+RG E+++E + A+ R+ +
Sbjct: 9 VGPFN-RVEGDLEVHLDLAGGRVAAARVNSP-LYRGFERMLEGRAPSDALTLTPRICGIC 66
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP--- 129
++Q A A A+ +G+ +G + L + + HL++ M
Sbjct: 67 SISQSAAAARALGAAMGLAPTDQGAWLAALIHAVENVSDHLVHFNLFFMPDFTRPCYAAR 126
Query: 130 ------------------LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
R LM +G H +PGGV + P +
Sbjct: 127 PWYPRAVARFAAIEGQAGRAAIAARSGLMHILGLMAGKWPHTLALQPGGVTRTPGPRDIL 186
Query: 172 DIGCWCDSFPSALND---------------ISDLLTGNRIFKQRNVNIGTVKLEDAWGWG 216
I F L ++DLL +R V I D G G
Sbjct: 187 RIQTELRMFRKHLETQVFGGRLEDFVVLASVADLLRWDRGDAGLFVEIAADLDLDRLGRG 246
Query: 217 F-----SGVMIRGSGAAWDLRKSQ-------------------PYECYSELDFDIPIGKH 252
G G + Q + FD
Sbjct: 247 AGRYLSFGAYPLAEGHGFAPGLWQAGAVTAPDMAAIAEDLSHAWMLGGTAHPFDGVTRPD 306
Query: 253 ------GDCYDRYLVRMMEMRESVKIIRQCVNRLL---GKNKVGPVSASDPKIVPPKRAD 303
+ + + E + RQ ++ G ++ +++ R
Sbjct: 307 ETMREGAYSWCKAPRLGGQPVEVGALARQLIDGHPLAVDLAGGGVLARVAGRLLELARTQ 366
Query: 304 --MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
M+ +L +G G VEA +G G +L G K +I AP
Sbjct: 367 LLMETWAAALDPGAVFMVQGRMPETGAGAGLVEAARGSLGHWLRI-EGGKIASYQIIAPT 425
Query: 362 YAHLQ---------AMEFLCKGHQLA---D----VSAILGSLDIVFGEV 394
+ +E G +A D V ++ S D
Sbjct: 426 TWNFSPRDSAGVPGPLEAALVGAPVAPGEDSPVAVQHVVRSFDPCMVCT 474
>gi|288940546|ref|YP_003442786.1| nickel-dependent hydrogenase large subunit [Allochromatium vinosum
DSM 180]
gi|288895918|gb|ADC61754.1| nickel-dependent hydrogenase large subunit [Allochromatium vinosum
DSM 180]
Length = 428
Score = 180 bits (458), Expect = 2e-43, Method: Composition-based stats.
Identities = 55/412 (13%), Positives = 117/412 (28%), Gaps = 36/412 (8%)
Query: 16 QHPA-AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPM 74
H G +++++ ++++ D I R E ++ + +L A R+ + +
Sbjct: 9 HHVTRVEGHGNIVVDVQNGVLKQCDLQIVETPRFFEAMLRGRPYLDASHLTSRICGICAV 68
Query: 75 NQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG---------- 124
A A E+ LG+ + L+R L + SH+L++
Sbjct: 69 GHATASLRATEQALGVTPSPQTTLLRKLNFHGEILDSHILHIYMLVAPDYLGVGSVIPLA 128
Query: 125 --ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
A L ++ G H GG E + ++ + +
Sbjct: 129 QSAPDVVLRALRMKQLAGDLCAAICGRHTHPISMTVGGFTHFPSLETLRELRARLVASRA 188
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQ------- 235
+ +LL G + + GV+ G WDL +
Sbjct: 189 DCDATIELLAGLDFPRFERDTEYVALHKGEEYCFIDGVIDSSDGGRWDLEDYRLITNETI 248
Query: 236 -PYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDP 294
P+ G R+ + ++ + + + ++A+
Sbjct: 249 VPHSSAKHTRHQRDSYMVG-ALARFNINHDKLHPRARAAAEALGLAPKVINPYLIAAAQA 307
Query: 295 KIVPPKRADMKRSMESLIHHFKLYTEGYHVPV--GEVYAAVEAPKGEFGVYLISDGGNKP 352
V D ++ L+ + E GE A E P+G +
Sbjct: 308 VEVVHCTEDAILLIDQLLEMGIRHEEPAAPTRLTGEGVGAAEVPRGTLFHHYQI-EDGAI 366
Query: 353 YRCKIRAPGYAHLQAMEFLCKGH--QLAD---------VSAILGSLDIVFGE 393
P +L +E + + D + ++ + D
Sbjct: 367 VGANCVIPTGQNLANIELDMRALVPTILDRSQEDITLALEMLVRAYDPCISC 418
>gi|225850245|ref|YP_002730479.1| nickel-dependent hydrogenase, large subunit [Persephonella marina
EX-H1]
gi|225646185|gb|ACO04371.1| nickel-dependent hydrogenase, large subunit [Persephonella marina
EX-H1]
Length = 428
Score = 180 bits (458), Expect = 2e-43, Method: Composition-based stats.
Identities = 59/406 (14%), Positives = 122/406 (30%), Gaps = 34/406 (8%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G + L + ++ V +I R E +++ K + + + R+ + P+ + +
Sbjct: 11 VEGEGSISLFYENGTLKDVKLNIFEPPRFIEGILKGKEYYRIIDVTSRICGICPVAYQIS 70
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA------------LT 127
A+E G+++ + +R LY I SH ++V +
Sbjct: 71 GVQAIEDAFGLKVSSEIEKLRRLYYFGEWIQSHAVHVFFLHLPDFLNKGSVFEVGKDSPE 130
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
G + ++ G H GG + + ++ I +
Sbjct: 131 FLKIGTIIKNAGSEIIQKIGGRVSHPVSISVGGFTKFADDDSLKSIIPLLEKALDLSVYA 190
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ +I + LE+ G ++ G + E D
Sbjct: 191 LKRFSEFNFPDNEIPDIHFLSLEEEEYPILKGDIVSNKGLRLTKEEFDN--VIKEYQVDH 248
Query: 248 PIGKHGDCYDRYLVRMMEMRESV----KIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
K Y R L + + K+ + + P+ + K + + +
Sbjct: 249 STAKRAKLYGRDLYIVGPISRFNNSYEKLSYMALKSSKDIDLYPPIK-NSFKTILIRMVE 307
Query: 304 MKRSMESLIHHFKLYTEG------YHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKI 357
+ S+E I K Y + Y V G Y EAP+G D K + I
Sbjct: 308 IIHSLERSIDLIKDYRKESLKNADYTVKEGTGYGVSEAPRGILWHKYSFDSEGKIKKADI 367
Query: 358 RAPGYAHLQAMEFLCKGHQ-----LADV----SAILGSLDIVFGEV 394
P + ME + + ++ ++ + D
Sbjct: 368 VPPTSQNQDIMEVSVRNMIMNRENIEEILKTGEKVIRNFDPCISCA 413
>gi|21674706|ref|NP_662771.1| hydrogenase/sulfur reductase, alpha subunit [Chlorobium tepidum
TLS]
gi|21647914|gb|AAM73113.1| hydrogenase/sulfur reductase, alpha subunit [Chlorobium tepidum
TLS]
Length = 424
Score = 180 bits (458), Expect = 3e-43, Method: Composition-based stats.
Identities = 56/414 (13%), Positives = 113/414 (27%), Gaps = 38/414 (9%)
Query: 16 QH-PAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPM 74
H P G + + + + + R E +++ + + R+ + +
Sbjct: 10 HHLPRVEGHGDIRISVRDGKLVDAKWAVVETPRFFEVMVKGLSAERVPFLTSRICGICSI 69
Query: 75 NQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP------ 128
+ A ++E+ + I P ++IR+L + SH L++ A TP
Sbjct: 70 SHSLASIRSLERAMQITPPETARIIRLLAMHGETLQSHALHLFFLAAPDFMGTPSVVPLM 129
Query: 129 ------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
G +E +G H GGV + + + +I
Sbjct: 130 QSHPEVVEAGLLLKELGNELSIATTGRATHPVSLVLGGVSKAPAKQRLAEIKQMIADRKP 189
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKS-----QPY 237
L+ +D R+ + + G ++ G D +
Sbjct: 190 MLDRATDFFMTLRVPEFVRETEFISLHDGKSYPYIGGNLVSTDGVKRDENDYLAMTNEYT 249
Query: 238 ECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIV 297
+S F + + + L P + ++V
Sbjct: 250 VDFSTSKFTRLSRESSAAGALARFNNNYAQLHPRAKEAAAAFGLEPVCHNPFMNNIAQLV 309
Query: 298 PPKR---ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYR 354
+ L + Y G AVEAP+G Y+ +D K +
Sbjct: 310 ECHHLVADAEELIDRLLDDDLRNIKADYKPRAGAATGAVEAPRGVLYHYMETDESGKVVK 369
Query: 355 CKIRAPGYAHLQAMEFLCKGHQLAD---------------VSAILGSLDIVFGE 393
P + + + H LA+ ++ S D
Sbjct: 370 GDCIIPTTQNNANIHYDL--HALAEQSLAQGMGEKEVEKLCEMLVRSYDPCISC 421
>gi|257092622|ref|YP_003166263.1| nickel-dependent hydrogenase large subunit [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257045146|gb|ACV34334.1| nickel-dependent hydrogenase large subunit [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
Length = 490
Score = 180 bits (458), Expect = 3e-43, Method: Composition-based stats.
Identities = 61/437 (13%), Positives = 130/437 (29%), Gaps = 63/437 (14%)
Query: 20 AHGVLRLILELD-GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ L LD + V++V HI + RG EK I+ + + + RL + P++
Sbjct: 29 VEGHGKVTLLLDENDEVQQVRLHI-VEFRGFEKFIQGRPYWEVPVMVQRLCGICPVSHHL 87
Query: 79 AYALAVEKLLGIE-IPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV-------------- 123
A A A++ ++G + + + +R L + SH L+ +
Sbjct: 88 AAAKALDHVVGADRLTPSAEKLRRLMHYGQILQSHALHFFHLSSPDLLFGFDSEAGRRNI 147
Query: 124 -----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
G R+ +G R+H PGGV++ + + +
Sbjct: 148 VGVAAAHPDVARQGVLLRKFGQEVIRLTAGKRIHGTGAIPGGVNRALTRAERDGLLADIY 207
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNI-GTVKLEDAWGWGFSGVMIRGSG----------- 226
L+ ++ G G GV+ G
Sbjct: 208 PIIGWSRQAVQLVKRLHTSDPALYDVFGRFPSNILSLVGADGVLDFYDGRLRARDADGKI 267
Query: 227 -------AAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKII---RQC 276
+ + + +S + F + + ++ I +
Sbjct: 268 IVDGVHVKDYHELIREEVKPWSYMKFPFLTALGPRDGWYKVGPLARVQNCASIPSPLAEA 327
Query: 277 VNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIH--HFKLYTEGYHVPVG----EVY 330
R ++ G + + + +M + E++ H H + + G +
Sbjct: 328 ERREFMEHGQGKLIHAPLAYHWARMIEMLHAAETIKHLLHDDDLSGSELITSGSRSRDGV 387
Query: 331 AAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK--------GHQLAD--- 379
+EAP+G + + C + + Q M + G QL++
Sbjct: 388 GVIEAPRGTLIHHYRVGDDDLVTMCNLIVSTTHNNQPMNEAIRRVARRYLNGRQLSEGLL 447
Query: 380 --VSAILGSLDIVFGEV 394
+ + D
Sbjct: 448 NHIEVAIRCFDPCLSCA 464
>gi|254442784|ref|ZP_05056260.1| Nickel-dependent hydrogenase superfamily [Verrucomicrobiae
bacterium DG1235]
gi|198257092|gb|EDY81400.1| Nickel-dependent hydrogenase superfamily [Verrucomicrobiae
bacterium DG1235]
Length = 440
Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats.
Identities = 52/409 (12%), Positives = 112/409 (27%), Gaps = 40/409 (9%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G + +++ GE VE V I R E + + F +A R+ + P+ + +
Sbjct: 24 VEGEGAMDIKIRGEKVEDVKLKIFEPPRFFEAFLRGRRFEEAPDITARICGICPVAYQMS 83
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG------------ALT 127
A+E+ LG+ + + + +R L I SH+L++
Sbjct: 84 SCHAIEQALGVTVDGQLRALRRLLYCGEWIESHVLHIYMLHAPDFLGYPDAVTLAKDYPD 143
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
++ G +H + GG ++ ++ + +
Sbjct: 144 VVKKALLLKKIGNELVTLLGGREIHPINVKVGGFYRVPDKAELKAFLPRLEEALPIAQET 203
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
G G ++ G + + ++
Sbjct: 204 VAFAGGLPFPDFEPEYEFVSLRHPDEYPFNEGRIVSSKGIDIPTSEFFDHFQEKHVEHST 263
Query: 248 PIG----KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+ + G L R + + Q + G + + K + + +
Sbjct: 264 SLHGLIRERGSYLVGPLARYSLNFDKLTPTAQQAAKDAGLAETCS---NPFKSIVVRSVE 320
Query: 304 MKRSMESLIHHFKLY------TEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKI 357
++E I + Y + G + EAP+G D I
Sbjct: 321 TLWAIEEAIKIIESYERSTESSVPCPPRAGVGHGCTEAPRGILYHQYEIDEHGFIKNAII 380
Query: 358 RAPGYAHLQAMEFLC-------KGHQLAD------VSAILGSLDIVFGE 393
P + + +E G L+D + + D
Sbjct: 381 VPPTSQNQKRIEEDLFEFVSENIG--LSDESLQWKCEQAIRNYDPCISC 427
>gi|304315262|ref|YP_003850409.1| F420-non-reducing hydrogenase, subunit A [Methanothermobacter
marburgensis str. Marburg]
gi|313104134|sp|P60227|MVHA_METTM RecName: Full=F420-non-reducing hydrogenase subunit A; AltName:
Full=Methyl viologen-reducing hydrogenase subunit alpha;
Short=MVH subunit A
gi|302588721|gb|ADL59096.1| F420-non-reducing hydrogenase, subunit A [Methanothermobacter
marburgensis str. Marburg]
Length = 472
Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats.
Identities = 64/436 (14%), Positives = 113/436 (25%), Gaps = 62/436 (14%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD VE H+ + RG EK ++ + +A R+ + +
Sbjct: 12 IEGHAKITVHLDDAGNVEDTRLHV-MEFRGFEKFLQGRPIEEAPRIVPRICGICDVQHHL 70
Query: 79 AYALAVEKLLGIEIP---IRGQLIRVLYSEIGRILSHLLNVTTQAMDVG----------- 124
A A AV+ G E +R + + + SH L+ A
Sbjct: 71 AAAKAVDACFGFEPDDVLPAAYKMREIMNWGSYMHSHGLHFYFLAAPDFIAGKDRKTRNV 130
Query: 125 ------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
A L E R+ + G +H PGG+ ++ E +D+
Sbjct: 131 FQIIKDAPDVALQAIELRKNALEIVRATGGRPIHPTSSTPGGISTELDDETQKDLLQKAQ 190
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKS---- 234
+L VN G +GV G K
Sbjct: 191 RNVELAEATLELAVPIFEENIDLVNSLGNIETYHTGLVKNGVWDVYDGIVRIKDKEGNLF 250
Query: 235 ----------------QPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
+PY G L R+ + + +
Sbjct: 251 REFKPADYADTIAEHVKPYSWLKFPYIKDLGYPDGVYRVSPLSRLNVADKMPDAAPKAQD 310
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP------VGEVYAA 332
+ + ++ E + G P G+
Sbjct: 311 YFKEFQDKFGYAQQTLLYHWARLIEVLACAECAADALEGDLSGEKFPDSLERQAGDGVGI 370
Query: 333 VEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLC---------KGHQLAD---- 379
VEAP+G + D + I + AME G ++ D
Sbjct: 371 VEAPRGTLTHHYTCDENGLITKANIVVATIQNNPAMEMGIQKVAQDYIKPGVEVDDKIFN 430
Query: 380 -VSAILGSLDIVFGEV 394
+ ++ + D
Sbjct: 431 LMEMVIRAYDPCLSCA 446
>gi|84489137|ref|YP_447369.1| MvhA [Methanosphaera stadtmanae DSM 3091]
gi|84372456|gb|ABC56726.1| MvhA [Methanosphaera stadtmanae DSM 3091]
Length = 476
Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats.
Identities = 61/440 (13%), Positives = 121/440 (27%), Gaps = 66/440 (15%)
Query: 20 AHGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ ++LD E V+ H+ + RG EK ++ + + R+ + +
Sbjct: 12 IEGHAKITVDLDEEGNVKDTKLHV-MEFRGFEKFLQGRPIEEVPRIVPRICGICDVQHHL 70
Query: 79 AYALAVEKLLGI---EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG----------- 124
A A A +++ G EI +R + + + SH L+ +
Sbjct: 71 AAAKACDQVFGYNDDEILPAAYKMREIMNWASVMHSHTLSFYFLSAPDFIGGKDRKTRNV 130
Query: 125 ------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
A R G +H PGG+ ++ E +D
Sbjct: 131 FQIIKDAPELAKKALALRRNSQDIVTAIGGRPIHQVSNTPGGITTELTDEEQKDNLVKAQ 190
Query: 179 SFPSALNDISD----LLTGNRIFKQ-----RNVNIGTVKLEDAWGWGFSGVMIRGS---- 225
D D + N + + G V +D ++G +
Sbjct: 191 EALELSLDTWDAAQPIFEENMDLIKTLGNVETYHCGLVDKKDGSWDMYNGNVRMTDKKGD 250
Query: 226 ---------GAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQC 276
+ +PY G L R+ + +
Sbjct: 251 IYAEFGSQDYTDYMAEGVKPYSWLKFPYIKELGYPEGIYRVAPLSRINVCTKMPDAAERA 310
Query: 277 VNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP--------VGE 328
+ L K + P + ++ + E + + G P G+
Sbjct: 311 QDYLNEFRKDFGYAQEPLLFHPARLIELVAASELAVDGLEGDLSGEKRPGAIDRSQITGK 370
Query: 329 VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLC---------KGHQLAD 379
VEA +G + +D + I + AME G ++ D
Sbjct: 371 GVGIVEASRGTLTHHYETDENGLVTKANIVVATVQNNPAMEMGIQQVAKNYIKPGVEVDD 430
Query: 380 -----VSAILGSLDIVFGEV 394
+ ++ + D
Sbjct: 431 KIFNLMEMVIRAYDPCLSCA 450
>gi|89894846|ref|YP_518333.1| Ni,Fe-hydrogenase large subunit [Desulfitobacterium hafniense Y51]
gi|219669289|ref|YP_002459724.1| nickel-dependent hydrogenase large subunit [Desulfitobacterium
hafniense DCB-2]
gi|89334294|dbj|BAE83889.1| Ni,Fe-hydrogenase large subunit [Desulfitobacterium hafniense Y51]
gi|219539549|gb|ACL21288.1| nickel-dependent hydrogenase large subunit [Desulfitobacterium
hafniense DCB-2]
Length = 517
Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats.
Identities = 69/493 (13%), Positives = 129/493 (26%), Gaps = 120/493 (24%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E++ +V G + RG E++++ + AV +R+ V +
Sbjct: 13 VEGHLRIEVEIENNVVTNA-WAQGTMFRGIEQILQGRDPRDAVYITERVCGVCMASHGWT 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILS---HLLNVTTQAMDV------------- 123
A+A+E G +P QLIR L + + H +++
Sbjct: 72 SAMAIEDAQGANVPRAAQLIRNLIAGSLWLHDHPLHFYHLSALDYLDVLAVNHYQGNVAE 131
Query: 124 --------------------------------------GALTPPLWGFEEREKLMVFYER 145
AL L + + K
Sbjct: 132 LLAVKNKIMSLVTAGDTAPLTPRYQPDSYSVRDPEIVTTALAHYLEALKIQGKAKKMSAV 191
Query: 146 ASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN-------------------- 185
G + H + GGV E +E + S
Sbjct: 192 LGGKQPHQSSIVVGGVTIYPRKEQLEAFRTLLNEVVSFAELTYVPDVVSFCTGPLLELGK 251
Query: 186 -----------DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKS 234
+ ++ I S A+ ++
Sbjct: 252 AGVGAGPGGYIAYGGFPMDDSGIEKLFKGGFISSEAPGVVEALDMSRITESVASAWYKEG 311
Query: 235 QPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLG--------KNKV 286
+P ++ K + + E E + R V + G K
Sbjct: 312 EPAHPWAGETVIDFDKKGAYTFIKSPRYKGETAEVGPLARMLVMQHSGLLDLMGRYGIKP 371
Query: 287 GPVSASDPKI--VPPKRADMKRSMESLI--------HHFKLYTEGYHVPV-GEVYAAVEA 335
G V+ + M R ++ L ++ + P G+ A EA
Sbjct: 372 GAVARHLARAQETLLITKSMYRWLDDLETLLGSKTVRPDIHDSKHWDPPAQGQGAALNEA 431
Query: 336 PKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQL-AD----VS 381
P+G G +L D + ++ P ++ +E G + D V
Sbjct: 432 PRGALGHWLKID-QHVISNYQMVVPTTWNISPRDEKNIPGPVEQALIGVPVDPDNPVNVV 490
Query: 382 AILGSLDIVFGEV 394
++ S D
Sbjct: 491 RVIRSFDPCLACA 503
>gi|110597814|ref|ZP_01386097.1| Nickel-dependent hydrogenase, large subunit [Chlorobium
ferrooxidans DSM 13031]
gi|110340539|gb|EAT59022.1| Nickel-dependent hydrogenase, large subunit [Chlorobium
ferrooxidans DSM 13031]
Length = 424
Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats.
Identities = 52/423 (12%), Positives = 113/423 (26%), Gaps = 40/423 (9%)
Query: 7 RSFTINFGPQHPA-AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
R +TI H G + + + + + R E +++ + +
Sbjct: 3 RDYTIAI--HHLTRVEGHANITITVRDGQLMEARWAVVETPRFFEVMLKGMSAERVPFLT 60
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG- 124
R+ + ++ A A+E+ + I P + R+L + SH L++ A
Sbjct: 61 SRICGICSISHALASIRALERAMHILPPAVAEKTRLLAMHGETLQSHALHLFFLAAPDFA 120
Query: 125 -----------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDI 173
G + +E +G H GG+ + + +
Sbjct: 121 GTASILPLMESHPDIVRAGLQLKELGNEISRVTTGRCTHPVSLVVGGLSKAPDKTQLAAL 180
Query: 174 GCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRK 233
L I G ++ G D
Sbjct: 181 QKMIRERKPLLETACAFFRTLAIPDFSRETEFISLANGVSYPSIGGHLVSSDGVERDEND 240
Query: 234 S-----QPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGP 288
+ + +S F + + ++ + L P
Sbjct: 241 YLLMTNEYTKEFSTSKFTRLSRETSAAGALARFNNSSAFLHPEALKAAESFGLRPVCHNP 300
Query: 289 VSASDPKIVP--PKRADMKRSMESLIHHFKL-YTEGYHVPVGEVYAAVEAPKGEFGVYLI 345
+ ++V D + ++SL+ ++ G AVEAP+G ++
Sbjct: 301 FMNNIAQLVECVHILEDAELLIDSLLDSELTAVKTPWNPQAGSATGAVEAPRGILYHHME 360
Query: 346 SDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLAD---------------VSAILGSLDIV 390
+D + R P + ++ K +A+ ++ S D
Sbjct: 361 TDSEGRVVRADCIIPTTQNNANIDLDLK--AIAEWALEKGKNDREIEKLCEMVVRSYDPC 418
Query: 391 FGE 393
Sbjct: 419 ISC 421
>gi|296109200|ref|YP_003616149.1| coenzyme F420 hydrogenase, subunit alpha [Methanocaldococcus
infernus ME]
gi|295434014|gb|ADG13185.1| coenzyme F420 hydrogenase, subunit alpha [Methanocaldococcus
infernus ME]
Length = 381
Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats.
Identities = 72/380 (18%), Positives = 125/380 (32%), Gaps = 22/380 (5%)
Query: 21 HGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAY 80
G +LILE+DGEIV++ RG E +++ K A R+ + A
Sbjct: 13 EGHSKLILEVDGEIVKKAYFINTTPIRGFETIVKGKPVEFAPIAVMRICGICQTTHGIAS 72
Query: 81 ALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV-----GALTPPLWGFEE 135
A+E +GIE+P G L+R L R+ SH L+ D + +
Sbjct: 73 CEAIEHAMGIEVPEDGLLLRELVGLGNRMHSHPLHHLLTLDDFVKSEEEKIELIKLIQKM 132
Query: 136 REKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD---LLT 192
R+ + G +H GG+ +I I F + + L
Sbjct: 133 RKVGQYIVDVVGGEGIHPPNIVIGGMRNNITERAKSKIYYALKEFEKDAKVLYEKYVELV 192
Query: 193 GNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKH 252
N + + ++G+ + G R + D+ + P Y +
Sbjct: 193 ENFLEETGIPDLGSHEFSYLATHTTYGD--RYAINWDDVTEILPQRYYDNKEVGTSTSIM 250
Query: 253 GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS---ME 309
Y V + R +++ +G G + + R+ ++
Sbjct: 251 IPLYGGVPVEVG--------PRARLSKFMGFKVKGNALEINIARAQENLGAVYRAFDILD 302
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
L H K Y G EAP+G + + K +I A + +E
Sbjct: 303 ELNIHGKT-RADYEYKEGVGIGVHEAPRGTNVHMVETSKDGKVKAYRITAASTWNFPVVE 361
Query: 370 FLCKGHQLADVSAILGSLDI 389
+G+ IL + DI
Sbjct: 362 KAIEGYPYKYAEVILRAYDI 381
>gi|1419379|emb|CAA56464.1| hydrogenase large alpha subunit [Acetomicrobium flavidum]
Length = 475
Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats.
Identities = 57/439 (12%), Positives = 118/439 (26%), Gaps = 71/439 (16%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD V H+ +RG E + F + R+ + P++
Sbjct: 15 IEGHGKITVMLDESGHVRETRFHV-TQYRGFEVFTHGRDFREMPVITPRICGICPVSHHL 73
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A A A +++LG+ I +R L + SH L+ +
Sbjct: 74 ASAKACDEILGVTITPAAHKLRELMHMGQIVQSHALSFFHLSSPDILLGFDAPVKIRNVA 133
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ + G ++H + PGGV++ + P+ + I
Sbjct: 134 GLVDRYPELAKKGIMLRKFGQEIIKTLGGKKIHPWHSIPGGVNRSLTPQERDAIAAQLPE 193
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSG------------- 226
S + L+ + G G + G
Sbjct: 194 MKSIAMEAIKLIKDYLQEGGEELKEFPTLDTAYMGLVRDGYLELYDGEVRIKAPRGRILD 253
Query: 227 ---------------AAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVK 271
W K Y+ +G V E
Sbjct: 254 QFDPKDYLDHIGEHVEPWSYLKFPFYKALGFPHGSYRVGPLARLNAADAVSTPEAS---- 309
Query: 272 IIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVG---- 327
+ + +G++ + P + + +E L+ + + V
Sbjct: 310 -KEFALYKEMGEDGIVPYTLYYHYARLIEALYGLERIEQLLADPDITSSDLRVTSKEINP 368
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK--------GHQLAD 379
E +EAP+G + + + + + AM + G + +
Sbjct: 369 EGIGVIEAPRGTLIHHYQVNESGVITKVNLIVATGHNNFAMNKGVEMVAKKYITGTNVPE 428
Query: 380 -----VSAILGSLDIVFGE 393
+ ++ + D
Sbjct: 429 GVFNRLEHVIRAYDPCLSC 447
>gi|16330683|ref|NP_441411.1| hydrogenase large subunit [Synechocystis sp. PCC 6803]
gi|1653175|dbj|BAA18091.1| hydrogenase large subunit [Synechocystis sp. PCC 6803]
gi|1771720|emb|CAA66212.1| hydrogenase subunit [Synechocystis sp. PCC 6803]
Length = 474
Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats.
Identities = 60/439 (13%), Positives = 116/439 (26%), Gaps = 70/439 (15%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + L+ V+ V H+ + +RG EK E + + R+ + P++
Sbjct: 13 IEGHAKISIFLNDQGNVDDVRFHV-VEYRGFEKFCEGRPMWEMAGITARICGICPVSHLL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A +KLL ++IP G+ +R L + SH L+ +
Sbjct: 72 CAAKTGDKLLAVQIPPAGEKLRRLMNLGQITQSHALSFFHLSSPDFLLGWDSDPATRNVF 131
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ E ++H+A+ PGGV + E + I
Sbjct: 132 GLIAADPDLARAGIRLRQFGQTVIELLGAKKIHSAWSVPGGVRSPLSEEGRQWIVDRLPE 191
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA------------ 227
+ +L + + + + G G
Sbjct: 192 AKETVYLALNLFKN--MLDRFQTEVAEFGKFPSLFMGLVGKNNEWEHYGGSLRFTDSEGN 249
Query: 228 --------------------AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMR 267
W K Y+ D +G + + E
Sbjct: 250 IVADNLSEDNYADFIGESVEKWSYLKFPYYKSLGYPDGIYRVGPLARLNVCHHIGTPEAD 309
Query: 268 ESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVG 327
+ ++ RQ + + ++ M K +
Sbjct: 310 QELEEYRQ--RAGGVATSSFFYHYARLVEILACLEAIELLMADPDILSKNCRAKAEINCT 367
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFL--------CKGHQLAD 379
E EAP+G + D + + + AM + H + +
Sbjct: 368 EAVGVSEAPRGTLFHHYKIDEDGLIKKVNLIIATGNNNLAMNKTVAQIAKHYIRNHDVQE 427
Query: 380 -----VSAILGSLDIVFGE 393
V A + D
Sbjct: 428 GFLNRVEAGIRCYDPCLSC 446
>gi|73748453|ref|YP_307692.1| hydrogenase, group 3, VhuA subunit [Dehalococcoides sp. CBDB1]
gi|147669233|ref|YP_001214051.1| F420-non-reducing hydrogenase subunit A [Dehalococcoides sp. BAV1]
gi|289432500|ref|YP_003462373.1| nickel-dependent hydrogenase large subunit [Dehalococcoides sp. GT]
gi|73660169|emb|CAI82776.1| hydrogenase, group 3, VhuA subunit [Dehalococcoides sp. CBDB1]
gi|146270181|gb|ABQ17173.1| F420-non-reducing hydrogenase subunit A [Dehalococcoides sp. BAV1]
gi|288946220|gb|ADC73917.1| nickel-dependent hydrogenase large subunit [Dehalococcoides sp. GT]
Length = 479
Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats.
Identities = 57/441 (12%), Positives = 111/441 (25%), Gaps = 68/441 (15%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++++ LD V HI L RG EK + + R+ V P++
Sbjct: 12 IEGAAKVVISLDDSGNVSDARMHIIEL-RGFEKFCIGRPVEEMPRITPRICGVCPLSHHL 70
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV--------------- 123
A A + + G+ P G+ +R L + + H+L+ A
Sbjct: 71 CSAKACDSVFGVTPPSAGRKLRELANATAYLEEHILHFFFLAGADLVMGPGENYSMRNVF 130
Query: 124 ----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
R + G +H GG + + E +
Sbjct: 131 GIAQKMPELGQKVIRSRHLASKMLDYLLGKDIHPVAAVAGGFSKPLTETEREKMMEMAKE 190
Query: 180 FPSALNDISDLLTGNRIFKQRN--VNIGTVKLEDAWGWGFSGVMIRGSGAAWDLR---KS 234
N K IG +K +G + + G +R K
Sbjct: 191 LLEFSKFSIAYAKENLFSKYEGLIKEIGVIKTGFLGTVDKNGALNQYDGNLRLMRPDGKF 250
Query: 235 QPYECYSELDF-DIPIGKHGDCYDRYLVRMM-----------------------EMRESV 270
+ LD + Y + R +
Sbjct: 251 TEFAPKDYLDHITERVEDWSYAKFPYAKELGEFNMDLDNPSGIFRVNTLARINACDRIAT 310
Query: 271 KIIRQCVNRL---LGKNKVGPVSASDPKIVPPKR--ADMKRSMESLIHHFKLYTEGYHVP 325
+ ++ + G+ + + +++ + +
Sbjct: 311 PLAQKELEEFRAKFGRPAQQSLLFNWARLIELLYNAERVIELLSDPEITSTNTRVPVTPK 370
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF--------LCKG--- 374
G VEAP+G +D + + A+ L KG
Sbjct: 371 AGRGVGCVEAPRGTLIHDYTTDENGLVTDANLVVATVMNNAAINMSVKQAAQTLIKGGKY 430
Query: 375 --HQLADVSAILGSLDIVFGE 393
L ++ ++ + D
Sbjct: 431 NETILDEIEMVIRAYDPCLSC 451
>gi|270307975|ref|YP_003330033.1| nickel-dependent hydrogenase, group 3, large subunit
[Dehalococcoides sp. VS]
gi|270153867|gb|ACZ61705.1| nickel-dependent hydrogenase, group 3, large subunit
[Dehalococcoides sp. VS]
Length = 479
Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats.
Identities = 57/441 (12%), Positives = 112/441 (25%), Gaps = 68/441 (15%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++++ LD V HI L RG EK + + R+ V P++
Sbjct: 12 IEGAAKVVINLDNSGNVSDARMHIIEL-RGFEKFCIGRPVEEMPRITPRICGVCPLSHHL 70
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV--------------- 123
A A + + G+ P G+ +R L + + H+L+ A
Sbjct: 71 CSAKACDNVFGVTPPSAGRKLRELANAAAYLEEHILHFFFLAGADLVMGPGENYSMRNVF 130
Query: 124 ----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
R + G +H GG + + E +
Sbjct: 131 GIAQKMPELGQKVIRSRHLASKMLDYLLGKDIHPVAAVAGGFSKPLTETEREKMMEMAKE 190
Query: 180 FPSALNDISDLLTGN--RIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLR---KS 234
N ++ IG +K +G + + G +R K
Sbjct: 191 LLEFSKFSIAYAKENLFSKYESLIKEIGVIKTGFLGTVDKNGALNQYDGNLRLMRPDGKF 250
Query: 235 QPYECYSELDF-DIPIGKHGDCYDRYLVRMMEMRE-----SVKIIRQCVNRL-------- 280
+ LD + Y + E S + + R+
Sbjct: 251 TEFSPKDYLDHITERVEDWSYAKFPYAKELGEFNMDLDNPSGILRVNTLARINVCDRIAT 310
Query: 281 -------------LGKNKVGPVSASDPKIVPPKR--ADMKRSMESLIHHFKLYTEGYHVP 325
G+ + + +++ + +
Sbjct: 311 PLAQKELEEFRAKFGRPAQQSLLFNWARLIELLYNAERVIELLSDPEITSTNTRVPVTPK 370
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF--------LCKG--- 374
G +EAP+G +D + + A+ L KG
Sbjct: 371 AGRGVGCIEAPRGTLIHDYTTDDNGLVTDANLVVATVFNNAAINMSVKQAAQTLIKGGKY 430
Query: 375 --HQLADVSAILGSLDIVFGE 393
L ++ ++ + D
Sbjct: 431 DETILDEIEMVIRAYDPCLSC 451
>gi|20093706|ref|NP_613553.1| coenzyme F420-reducing hydrogenase, alpha subunit [Methanopyrus
kandleri AV19]
gi|19886594|gb|AAM01483.1| Coenzyme F420-reducing hydrogenase, alpha subunit [Methanopyrus
kandleri AV19]
Length = 482
Score = 179 bits (455), Expect = 5e-43, Method: Composition-based stats.
Identities = 67/452 (14%), Positives = 119/452 (26%), Gaps = 69/452 (15%)
Query: 8 SFTINFGPQHPAAHGVLRLILELD-GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N P G ++++E D ++ H+ + RG EK +E + A
Sbjct: 9 EMVVNVEPVT-RVEGHGKIVVEFDEDGNLKDARFHVVEV-RGFEKFLEGRPIEDAPILTP 66
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV--- 123
R+ + + A A A +++ G+E P + +R L + SH L+ A
Sbjct: 67 RICGICQVAHHLASAKAADEVFGVEPPEPARKLRELMHHAATVHSHALHFYFLAAPDLVK 126
Query: 124 ----------------GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP 167
E R+ E G +H PGGV + +
Sbjct: 127 PEEEDPMKRHVLALARENPEVVKCAIELRKIGQTIVEAVGGKPIHPVTAVPGGVSKPLEE 186
Query: 168 ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF-SGVMIRGSG 226
+ E++ S DL + + LE GV G
Sbjct: 187 DRREELLELARSAVELAERTVDLAEELTRRLEEEGLLELGYLESYHMGMVSDGVHELYDG 246
Query: 227 A--------------------AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEM 266
+PY + G L R+
Sbjct: 247 VIRVVDPEGNVDREFEPSEYLDHIAEAVRPYSYLKFPYLRDKGEEEGLYRVNTLSRLNVC 306
Query: 267 RESVKIIRQC----VNRLLGKNKVGPVSASDPKIVPP--KRADMKRSMESLIHHFKLYTE 320
Q + GK P+ + + +E E
Sbjct: 307 DRMATPRAQGRYEELVDEYGKPCHHPMLYHYARTIELLSSAERCVELLEDDEITGDDVRE 366
Query: 321 GYHVPV--GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLA 378
GE VEAP+G + +D + + AM+ K ++A
Sbjct: 367 EVDPDDVTGEGIGCVEAPRGTLIHHFKTDEEGLITEVNLIVATVQNNPAMDLGVK--KVA 424
Query: 379 D----------------VSAILGSLDIVFGEV 394
+ + ++ + D
Sbjct: 425 EEYLRSPEDASPEVLNRMEMVIRAYDPCLSCA 456
>gi|126656039|ref|ZP_01727423.1| hydrogenase large subunit [Cyanothece sp. CCY0110]
gi|126622319|gb|EAZ93025.1| hydrogenase large subunit [Cyanothece sp. CCY0110]
Length = 474
Score = 179 bits (455), Expect = 5e-43, Method: Composition-based stats.
Identities = 66/442 (14%), Positives = 119/442 (26%), Gaps = 76/442 (17%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD V+ H+ + +RG EK E + + R+ + P++
Sbjct: 13 IEGHAKISIFLDDKGKVDDARFHV-VEYRGFEKFCEGRPMWEMAGITARICGICPVSHLL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A A +K+L ++IP + +R L + SH L+ +
Sbjct: 72 ASAKTGDKILAVKIPTAAEKLRRLMNLAQITQSHALSFFHLSSPDFLLGWDSDPSKRNIF 131
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ E ++HAA+ PGGV + E + I
Sbjct: 132 GLIASDPELAKSGIRLRQFGQTIIELLGAKKIHAAWTVPGGVRSPLSEEGKQWIIERLPE 191
Query: 180 FPSALNDISDLLTG-NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA----------- 227
N+ L G F+ G G G+ G
Sbjct: 192 AYETANNALSLFKGLLDRFETEIKTFGDFPSLFMGLVGEDGLWEHYGGHIRFTDSEGNIV 251
Query: 228 ------------------AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRES 269
W K Y+ +G + +
Sbjct: 252 ADNLKEEDYKDFIGESVEKWSYLKFPYYKPLGYPQGIYRVGPLARVNICSRFGTEKADQE 311
Query: 270 VKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVG-- 327
++ R +R G + +E LI+ + ++ G
Sbjct: 312 LEEFR---DRAGGVATSSFFYHYARLVEIIGC---LERIERLINDPDVLSKHTRAKAGIN 365
Query: 328 --EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF--------------L 371
E EAP+G + + + + + AM +
Sbjct: 366 NLEGIGVSEAPRGTLFHHYNVNENGLIQKVNLIIATGNNNLAMNQTVAQIAKYYVKGNAM 425
Query: 372 CKGHQLADVSAILGSLDIVFGE 393
+G L V A + D
Sbjct: 426 TEG-MLNRVEAGIRCYDPCLSC 446
>gi|240171841|ref|ZP_04750500.1| coenzyme F420-reducing hydrogenase, alpha subunit [Mycobacterium
kansasii ATCC 12478]
Length = 430
Score = 179 bits (455), Expect = 5e-43, Method: Composition-based stats.
Identities = 56/417 (13%), Positives = 115/417 (27%), Gaps = 30/417 (7%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ + T++ G G L + L ++ V +I R E + + + +
Sbjct: 3 TDNRTLSVGTLT-RVEGEGALHVTLKDGALDSVQLNIYEPPRFFEAFLRGRAYTEPPDLT 61
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
R+ + P+ + + A+E+ G+E+ +R L I SH+L+V
Sbjct: 62 ARICGICPVAYQVSACNAIEQTCGVEVDPELVALRRLLYCGEWIHSHVLHVYLLHAPDFL 121
Query: 126 LTP------------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDI 173
P G ++ + G +H R GG + + +
Sbjct: 122 GCPDVIALARDQRAAVERGLRLKKAGNKLMDFIGGRSIHPINVRLGGFYSVPDRSQLAPL 181
Query: 174 GCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRK 233
+ ++G + + +G + R +G ++ + +
Sbjct: 182 AELLRRALDDALATVEWVSGFDFPDLELDHEMLAVSQPGQYAIENGAIARSAGPSFPVAE 241
Query: 234 SQPYECYSELDFDIPIGKHGDCYDRYLVRM-MEMRESVKIIRQCVNRLLGKNKVGPVSAS 292
+ S++ + D + S + G
Sbjct: 242 FTGHVHESQVPHSTALHATLDGGRYLTGPLARYCLNSSALSPIAGEAAAAAGLSGECRNP 301
Query: 293 DPKIVPPKRADMKRSMESLIHHFKLYTE-----GYHVPVGEVYAAVEAPKGEFGVYLISD 347
IV + E+L V G + EAP+G D
Sbjct: 302 FRSIVVRAVEVVYAIEEALRIIDGYQRPSRPFVEVPVRAGVGHGVSEAPRGLLYHRYEID 361
Query: 348 GGNKPYRCKIRAPGYAHLQAME-----FLCKGHQLADV------SAILGSLDIVFGE 393
I P + A+E + LAD ++ + D
Sbjct: 362 DDGLISAATIIPPTSQNQAAIENDLARVVSANLALADAELTTLCERVIRNYDPCISC 418
>gi|257092373|ref|YP_003166014.1| nickel-dependent hydrogenase large subunit [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257044897|gb|ACV34085.1| nickel-dependent hydrogenase large subunit [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
Length = 486
Score = 179 bits (455), Expect = 6e-43, Method: Composition-based stats.
Identities = 68/483 (14%), Positives = 127/483 (26%), Gaps = 102/483 (21%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
+ GP + G L + L++ V L+RG E ++ K L A+ R+
Sbjct: 5 LTIGPFN-RVEGDLEVTLDIADGRVASAQVSS-SLYRGFEHILLAKHPLDALVIVPRICG 62
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ ++Q A A A+ G+++P G+L L + HL + M A
Sbjct: 63 ICSVSQSAAAATALAAAAGVDMPPNGRLASNLILACENLADHLTHFYLFFMPDFARAAYR 122
Query: 131 -----------------WGFEE----REKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL 169
E R L+ +G H+ +PGG + +
Sbjct: 123 GCSWHATTERRFQATVGEALREVLPARADLLRLMGYLAGKWPHSLALQPGGTTRAVTATE 182
Query: 170 VEDIGCWCDSFPSAL------------------NDISDLLTGNRIFKQRNVNIG------ 205
+ F + L ++++ G R + I
Sbjct: 183 KVRLLVVLREFRAFLSSTVFGDALENVAAIGSADELAAWAEGRPGDLPRFLEIAGDLDLA 242
Query: 206 --------TVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKH----- 252
+ G G + G R+ E +
Sbjct: 243 RCGRASDTFLSYGAYAHGGRDGQPLFARGVWHGQRRPFEEPLIREDVTHAWLHGDRPLHP 302
Query: 253 -----------------GDCYDRYLVRMMEMRESVKIIRQCVNRLL------GKNKVGPV 289
+ + + E+ + RQ V +
Sbjct: 303 RQGETRPLTGEFADKASAYTWCKAPRYDGRIVETGALARQMVAGQPLVRALVAAEGGSVL 362
Query: 290 SASDPKIVPPKRA--DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISD 347
+ +++ M+ + +L VEA +G G +L
Sbjct: 363 ARVVARLLELALVVPAMEGWVRALTPGEAFCHAWQLPDQASGVGLVEAARGSLGHWLRI- 421
Query: 348 GGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLAD-------VSAILGSLDIVF 391
G K +I AP + A+E G + + V ++ S D
Sbjct: 422 EGGKIAGYQIIAPTTWNFSPRDAAGVPGALEQALVGLPVGEDERVPLAVQHVVRSFDPCM 481
Query: 392 GEV 394
Sbjct: 482 VCT 484
>gi|46981404|gb|AAT07678.1| bidirectional hydrogenase large subunit [Lyngbya majuscula CCAP
1446/4]
Length = 476
Score = 179 bits (455), Expect = 6e-43, Method: Composition-based stats.
Identities = 62/442 (14%), Positives = 123/442 (27%), Gaps = 74/442 (16%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD VE H+ + RG EK E + + R+ + P++
Sbjct: 13 IEGHAKISVYLDDAGEVENARFHV-VEFRGFEKFCEGRPMFEMAGITARICGICPVSHLL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A A +K+L +++P G+ +R + + SH L+ +
Sbjct: 72 ASAKTGDKILAVQVPPAGEKLRRMMNLAQLTQSHALSFFHLSSPDFLIGWDSDPAKRNVF 131
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ E ++HAA+ PGGV + E I
Sbjct: 132 GLIESDPDLARSGIRLRQFGQTIIEILGAKKIHAAWAVPGGVRSPLSEEGRTWIKDRLPE 191
Query: 180 FPSALNDISDLLTG--NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA---------- 227
+ + L + F G +G G
Sbjct: 192 SKTTAENALVLFKDLLDSHFTDEVDAFGKFPSLFMSLVAENGNWEHYGGHLRFIDSDGNI 251
Query: 228 -------------------AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRE 268
W K Y+ + +G + E
Sbjct: 252 VADHLSEDHYQEFLGEAVENWSYLKFPYYKPLGYPNGIYRVGPLARLNTCDRIGT---PE 308
Query: 269 SVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVG- 327
+ + +++ +R G+ +++ +E L++ + + G
Sbjct: 309 ANRELQEFRDRAGGRVATSSFFYHYARLIEIIAC--LEEIEHLVNDPDVVSSRVRATAGI 366
Query: 328 ---EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFL--------CKGHQ 376
E EAP+G + D + + + AM G++
Sbjct: 367 NNLEAIGVSEAPRGTLFHHYNVDENGLIEKVNLIIATGQNNLAMNKTVTQIAKHYIHGNE 426
Query: 377 LAD-----VSAILGSLDIVFGE 393
+ + V A + + D
Sbjct: 427 IPEGLLNRVEAGIRAYDPCLSC 448
>gi|296131799|ref|YP_003639046.1| nickel-dependent hydrogenase large subunit [Thermincola sp. JR]
gi|296030377|gb|ADG81145.1| nickel-dependent hydrogenase large subunit [Thermincola potens JR]
Length = 519
Score = 179 bits (455), Expect = 6e-43, Method: Composition-based stats.
Identities = 73/492 (14%), Positives = 131/492 (26%), Gaps = 119/492 (24%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E++ +V+ G + RG E L++ K A +R+ V +
Sbjct: 13 IEGHLRVEVEIENGVVKDA-WSSGTMFRGWEVLLQGKDPRDATYVTERVCGVCAGSHGWG 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILS------HL-------------------- 113
+LA++ G ++P G+++R L + HL
Sbjct: 72 SSLALDDAFGAQVPDAGRILRNLMLGAMWLHDHPLHFYHLCALDYIDVMAVANYKGNDPG 131
Query: 114 ----------------------------LNVTTQAMDVGALTPPLWGFEEREKLMVFYER 145
V + A++ L E + K
Sbjct: 132 LLAVKDKIVKLVQAGDAAPLTPRYEPDQYCVNDPELATVAVSHYLKALEMQAKAKKMSAL 191
Query: 146 ASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS----------------- 188
G + H + GGV P+LV L +I
Sbjct: 192 FGGKQPHQSSIIVGGVTCYPNPQLVAQFRSLLMEQIEYLENIYYKDVIAFGTGPLLPLAQ 251
Query: 189 --------DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ L + K S VM + K Y
Sbjct: 252 SGLGGGKPNYLAFGGFPQDSEGKDLFFKRGLILNGNLSQVMEVDIDKITEEAKYAWYAVE 311
Query: 241 S------ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKN--------KV 286
+ + E+ E + R V + K
Sbjct: 312 EPLTPLKGNTEHKLDKPDAYSFIKAPRYDGEILEVGPLARMMVMQPKAFMDLVEKYKIKP 371
Query: 287 GPVSASDPKIVP-----PKRADMKRSMESLIHHFK---LYTEGYHVPV-GEVYAAVEAPK 337
G V+ + V K + +ESL++ + T + VP + +EAP+
Sbjct: 372 GVVARHAARAVETIMLAHKMVEWLDELESLMNRGEVRIHDTAHWEVPESAQGAGLLEAPR 431
Query: 338 GEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLAD------VSA 382
G Y+ K ++ P +L +E G + D ++
Sbjct: 432 GALAHYIDIK-DKKVANYQMVVPSTWNLSPRDNKGNRGPVEEALIGVPVPDPKNPINLAR 490
Query: 383 ILGSLDIVFGEV 394
++ S D
Sbjct: 491 VIRSFDPCISCA 502
>gi|193211988|ref|YP_001997941.1| nickel-dependent hydrogenase large subunit [Chlorobaculum parvum
NCIB 8327]
gi|193085465|gb|ACF10741.1| nickel-dependent hydrogenase large subunit [Chlorobaculum parvum
NCIB 8327]
Length = 424
Score = 179 bits (455), Expect = 6e-43, Method: Composition-based stats.
Identities = 59/413 (14%), Positives = 115/413 (27%), Gaps = 36/413 (8%)
Query: 16 QH-PAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPM 74
H P G + + + + + R E +++ + + R+ + +
Sbjct: 10 HHLPRVEGHGDIRISVRDGKLVDAKWAVVETPRFFEVMVKGLSAERVPFLTSRICGICSI 69
Query: 75 NQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP------ 128
+ A ++E+ + I P ++IR+L + SH L++ A A TP
Sbjct: 70 SHSLASIRSLERAMQITPPETARIIRLLAMHGETLQSHALHLFFLAAPDFAGTPSAVPLL 129
Query: 129 ------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
G +E +G H GGV + + + +I
Sbjct: 130 QSHPEVVEAGLMLKELGNELSIATTGRATHPVSLVLGGVSKAPSKQRLAEIKQMIVDRKP 189
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKS----QPYE 238
L+ ++ I + G ++ G D Y
Sbjct: 190 MLDKATEFFKTLTIPDFVRETEFISLFDGESYPYIGGDLVTTDGVRRDENDYLAMTNEYT 249
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
+ + L R + + + G V +
Sbjct: 250 VEFATTKFTKVSRES-SAAGALARFNNNYDLLHPQAKAAAEAFGLKPVCHNPFMNNVAQL 308
Query: 299 PKRADMKRSMESLIHHFKLYT-----EGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPY 353
+ + E +I Y G AVEAP+G Y+ +D K
Sbjct: 309 VECHHLVADAEEIIDCLLDDDLRDIKADYKPRAGAATGAVEAPRGVLYHYMETDENGKVV 368
Query: 354 RCKIRAPGYAH-------LQAM-EFLC---KGHQ-LADV-SAILGSLDIVFGE 393
+ P + L A+ E KG + + + ++ S D
Sbjct: 369 KGDCIIPTTQNNANIHYDLHALAEQALAQGKGEKEVEKLCEMLVRSYDPCISC 421
>gi|172037230|ref|YP_001803731.1| hydrogenase large subunit [Cyanothece sp. ATCC 51142]
gi|171698684|gb|ACB51665.1| hydrogenase large subunit [Cyanothece sp. ATCC 51142]
Length = 474
Score = 179 bits (454), Expect = 7e-43, Method: Composition-based stats.
Identities = 66/442 (14%), Positives = 116/442 (26%), Gaps = 76/442 (17%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD V+ H+ + +RG EK E + + R+ + P++
Sbjct: 13 IEGHAKISIFLDDNGQVDDARFHV-VEYRGFEKFCEGRPMWEMAGITARICGICPVSHLL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A A +K+L ++IP + +R L + SH L+ +
Sbjct: 72 ASAKTGDKILAVKIPQPAEKLRRLMNLAQITQSHALSFFHLSSPDFLLGWDSDPAKRNIF 131
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ E ++HAA+ PGGV + + + I
Sbjct: 132 GLIASDPELAKSGIRLRQFGQTIIELLGAKKIHAAWSVPGGVRSPLSKDSQQWIKERLPE 191
Query: 180 FPSALNDISDLLTG-NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA----------- 227
N+ L F+ G G G+ G
Sbjct: 192 AYETANNALSLFKKLLDRFETEVKTFGDFPSLFMGLVGEDGLWEHYGGHLRFSDSQGNIV 251
Query: 228 ------------------AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRES 269
W K Y+ +G R + E
Sbjct: 252 ADHLKEEDYQDFIGESVEKWSYLKFPYYKPLGYPQGIYRVGP----LARLNICSHFGTEK 307
Query: 270 VKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVG-- 327
+ G ++V +E L++ L + G
Sbjct: 308 ADQELEEFRNRAGGVATSSFFYHYARLVEIIGC--LERIERLMNDPDLLSTNTRAKAGIN 365
Query: 328 --EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF--------------L 371
E EAP+G + D + + + AM +
Sbjct: 366 NLEGIGVSEAPRGTLFHHYNVDENGLIKKVNLIIATGNNNLAMNKTVTQIAKHYVKGNAM 425
Query: 372 CKGHQLADVSAILGSLDIVFGE 393
+G L V A + D
Sbjct: 426 TEG-MLNRVEAGIRCYDPCLSC 446
>gi|34329623|gb|AAQ63960.1| HoxH [Arthrospira platensis FACHB439]
Length = 450
Score = 179 bits (454), Expect = 7e-43, Method: Composition-based stats.
Identities = 61/442 (13%), Positives = 119/442 (26%), Gaps = 74/442 (16%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD VE H+ + RG EK E + + R+ + P++
Sbjct: 6 IEGHAKISIYLDDAGEVEDARFHV-VEFRGFEKFCEGRPMFEMAGITARICGICPVSHLL 64
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A A +K+L +++P G+ +R + + SH L+ +
Sbjct: 65 AAAKTGDKILAVKVPPAGEKLRRMMNLAQLTQSHALSFFHLSSPDFLLGWDSDPAKRNVF 124
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ E ++HAA+ PGGV + + +E I
Sbjct: 125 GLIAADPDLARAGIRLRQFGQTVIELLGARKIHAAWAVPGGVRSPLSQDGLEWIKDRLPE 184
Query: 180 FPSALND----------------------ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF 217
L G + G
Sbjct: 185 ARQTTELALNLLKRLLDSNLASEVDIFGKFPSLFMGLVAPNGNWEHYGGHLRFIDSDGNI 244
Query: 218 SGVMIRGSGA---------AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRE 268
+ W K Y+ D +G + +
Sbjct: 245 VADGLSEDNYQDYLGEAVENWSYLKFPYYKPLGYPDGIYRVGPLARLNVCDQIGTTDADR 304
Query: 269 SVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVG- 327
++ R +R G+ ++V ++E+L+ + + G
Sbjct: 305 ELREFR---DRAGGRVATSSFFYHYARLVEIMACI--EAIEALVEDPDITSPRVRADAGI 359
Query: 328 ---EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFL--------CKGHQ 376
E EAP+G + + + + + AM G++
Sbjct: 360 NNLEGVGVSEAPRGTLFHHYKVNENGLIEKVNLIIATGQNNLAMNKTVTQIAKHYIHGNE 419
Query: 377 LAD-----VSAILGSLDIVFGE 393
+ + V A + D
Sbjct: 420 IPEGLLNRVEAGIRCFDPCLSC 441
>gi|88811668|ref|ZP_01126922.1| hypothetical protein NB231_04665 [Nitrococcus mobilis Nb-231]
gi|88791059|gb|EAR22172.1| hypothetical protein NB231_04665 [Nitrococcus mobilis Nb-231]
Length = 429
Score = 179 bits (454), Expect = 7e-43, Method: Composition-based stats.
Identities = 59/416 (14%), Positives = 119/416 (28%), Gaps = 40/416 (9%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + + +V + I R E L+ + F +A R+ + P+ + +
Sbjct: 14 VEGEGALRVTVRDGVVRAAELRIFEPPRFFEALLRGRAFAEAPDITARICGICPVAYQMS 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG------------ALT 127
A+E LG+ + + +R L I SH L++
Sbjct: 74 AVHAMENALGVHVDGPLRELRRLLYCGEWIESHALHIYLLHAPDFLGYAGAIDMARDHPE 133
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
G ++ G +H R GG ++ + + + A +
Sbjct: 134 TVRRGLALKKVGNAVMSLLGGREVHPINVRVGGFYRTPTRQELAPLAENLRRARDAALET 193
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
G G ++ G + + + +
Sbjct: 194 VRWTAGFDFPDCNRDYELVALRHPQEYPFNEGRIVSNRGLDISVAEYNRHFVEEHIAHST 253
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIR--QCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ + YLV R S+ R + +GP + + + + ++
Sbjct: 254 ALHSRLRERNSYLV-GPLARYSLNYDRLSPLAREAATEAGLGPSCTNPFQSIIVRSVEVL 312
Query: 306 RSMESLIHHFKLYTEGY------HVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
+ + + + Y E G +A EAP+G +G +I
Sbjct: 313 YACDEALRIIECYEEPERAAVELRPCAGVGCSATEAPRGLLFHRYRLNGDGTIAEAQIVP 372
Query: 360 PGYAHLQAMEFLCK---G--HQLADVSA------ILGSLDIVFGE--------VDR 396
P + ++E K G +L D + + + D VDR
Sbjct: 373 PTAQNQPSIEEDLKTFIGDWLELPDAALRERCEQTVRNYDPCISCATHFLNLEVDR 428
>gi|114329050|ref|YP_746207.1| formate hydrogenlyase subunit 5 [Granulibacter bethesdensis
CGDNIH1]
gi|114317224|gb|ABI63284.1| formate hydrogenlyase subunit 5 [Granulibacter bethesdensis
CGDNIH1]
Length = 517
Score = 179 bits (454), Expect = 8e-43, Method: Composition-based stats.
Identities = 85/386 (22%), Positives = 134/386 (34%), Gaps = 35/386 (9%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
GP HP +L L L G ++ + + +G HRG + L+ K A+ R+ A
Sbjct: 163 IGPVHPLMREPAQLRLHLHGTLIRQAEWRLGYTHRGIQWLMRGKPLRDAIRIAARITGDA 222
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWG 132
+ A+A A E L +E P R L+R L +E+ R HL + A GA T
Sbjct: 223 ALAHGLAFARAAEAALRLEPPPRALLLRGLMNELERCAVHLHVLAATASAAGADTYAAKL 282
Query: 133 FEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVED--IGCWCDSFPSALNDISDL 190
RE+L+ + A G+RM PGGV D+ + + + P +
Sbjct: 283 SAWRERLLRAIQEAFGNRMMIDLLIPGGVLTDLLDGTALETVLQALARTMPELIEGYETA 342
Query: 191 L-TGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ DA G R SG DLR + +
Sbjct: 343 ASLSGHGLCACLRGCAVLSGSDAVSLAVPGPAGRASGRPHDLRTTWQQAP--HGTVHRLV 400
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
++GD R VR+ E++ES+++ + VGP++ P
Sbjct: 401 LENGDADARMRVRLAEIQESLRLALLFLE----SLPVGPIANPMPIGTGNA--------- 447
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
GE Y VE+ +G +L G P + + A+E
Sbjct: 448 ----------------SGEGYGGVESARGACWHWLRI-EGGMVVSAHAADPSWRLIPAIE 490
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVD 395
G + + L S + D
Sbjct: 491 AALPGTDIDRLGVALASFALSPAGAD 516
>gi|89902879|ref|YP_525350.1| hydrogen:quinone oxidoreductase [Rhodoferax ferrireducens T118]
gi|89347616|gb|ABD71819.1| Hydrogen:quinone oxidoreductase [Rhodoferax ferrireducens T118]
Length = 496
Score = 178 bits (453), Expect = 9e-43, Method: Composition-based stats.
Identities = 66/492 (13%), Positives = 123/492 (25%), Gaps = 113/492 (22%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
GP + G L + LE+ V + + RG E ++ + + A+ R+ +
Sbjct: 6 LGPFN-RVEGDLEVQLEVTDGRVTEARVNAP-MFRGFELILNGRDPMDALSIAPRICGIC 63
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG--ALTPPL 130
++Q A A A+ G+ +P G L HL + M A+
Sbjct: 64 SVSQSVAAAKALADASGVVVPPNGMHAINLMLACENFADHLTHFYLFFMPDFTRAVYAAR 123
Query: 131 WGFEEREK-------------------------LMVFYERASGSRMHAAYFRPGGVHQDI 165
F E E+ G H PGG + I
Sbjct: 124 PWFREAERRFAALAGSTSNGGLRSRAALAARARWFELIGTLGGKWPHTGAVLPGGTSRAI 183
Query: 166 PPELVEDIGCWCDSFPSALNDI-----------------------------SDLLTGNRI 196
+ + L L
Sbjct: 184 ETTERIRLLARVREMRAFLEQTLFGTALEEVATLDSLAALQRWRARAAGSDMALFLDLAE 243
Query: 197 F------------------KQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQP-- 236
R + G+ + + + D R +
Sbjct: 244 ATQLTNLGPGPGRYLSYGAYARFEGGHALARGVWDAALQQGLPLDPTQISEDARHAWYAE 303
Query: 237 ------YECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLG------KN 284
+ L P +++ ++ E+ I RQ V+ +
Sbjct: 304 STSAQALHPMAGLTQPEPDKPGAYSWNKAPRLGSQVVETGAIARQLVDGQPLIRAAVLAH 363
Query: 285 KVGPVSASDPKIVPPKRAD--MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGV 342
+ +++ R M++ + +L H + + EA +G G
Sbjct: 364 GGTVYTRVLARLLEMARILPLMEQWLLALQPHAPFHAVQAQPEQAQGIGLTEAARGALGH 423
Query: 343 YLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLAD-----------VSA 382
+L + +I AP + A+E G +L + V
Sbjct: 424 WLRI-ENGRIAHYQIVAPTSWNFSPRDAAGTPGALEAALVGARLDNAIEGAGGQSVAVQH 482
Query: 383 ILGSLDIVFGEV 394
I+ S D
Sbjct: 483 IVRSFDPCMVCT 494
>gi|209525018|ref|ZP_03273562.1| nickel-dependent hydrogenase large subunit [Arthrospira maxima
CS-328]
gi|209494427|gb|EDZ94738.1| nickel-dependent hydrogenase large subunit [Arthrospira maxima
CS-328]
Length = 476
Score = 178 bits (453), Expect = 9e-43, Method: Composition-based stats.
Identities = 61/442 (13%), Positives = 119/442 (26%), Gaps = 74/442 (16%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD VE H+ + RG EK E + + R+ + P++
Sbjct: 13 IEGHAKISIYLDDAGEVEDARFHV-VEFRGFEKFCEGRPMFEMAGITARICGICPVSHLL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A A +K+L +++P G+ +R + + SH L+ +
Sbjct: 72 AAAKTGDKILAVKVPPAGEKLRRMMNLAQLTQSHALSFFHLSSPDFLLGWDSDPAKRNVF 131
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ E ++HAA+ PGGV + + +E I
Sbjct: 132 GLIAADPDLARAGIRLRQFGQTVIELLGARKIHAAWAVPGGVRSPLSQDGLEWIKDRLPE 191
Query: 180 FPSALND----------------------ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF 217
L G + G
Sbjct: 192 ARQTTELALNLLKRLLDSNLASEVDIFGKFPSLFMGLVAPNGNWEHYGGHLRFIDSDGNI 251
Query: 218 SGVMIRGSGA---------AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRE 268
+ W K Y+ D +G + +
Sbjct: 252 VADGLSEDNYQDYLGEAVENWSYLKFPYYKPLGYPDGIYRVGPLARLNVCDQIGTTDADR 311
Query: 269 SVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVG- 327
++ R +R G+ ++V ++E+L+ + + G
Sbjct: 312 ELREFR---DRAGGRVATSSFFYHYARLVEIMACI--EAIEALVEDPDITSPRVRADAGI 366
Query: 328 ---EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFL--------CKGHQ 376
E EAP+G + + + + + AM G++
Sbjct: 367 NNLEGVGVSEAPRGTLFHHYKVNENGLIEKVNLIIATGQNNLAMNKTVTQIAKHYIHGNE 426
Query: 377 LAD-----VSAILGSLDIVFGE 393
+ + V A + D
Sbjct: 427 IPEGLLNRVEAGIRCFDPCLSC 448
>gi|326402828|ref|YP_004282909.1| putative NADH-ubiquinone oxidoreductase [Acidiphilium multivorum
AIU301]
gi|325049689|dbj|BAJ80027.1| putative NADH-ubiquinone oxidoreductase [Acidiphilium multivorum
AIU301]
Length = 478
Score = 178 bits (453), Expect = 9e-43, Method: Composition-based stats.
Identities = 77/389 (19%), Positives = 136/389 (34%), Gaps = 37/389 (9%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ FGP GE + PH+ L HRG E +T + +R+
Sbjct: 125 VLPFGPVRAGVVESAEFSFFYVGEAILHYVPHLFLKHRGMEDRFVDQTPETGLVLAERVS 184
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
V + AYA A+E + +P R + RV+ +E+ R+ +HL + A
Sbjct: 185 GVGSVAHALAYAQAMEAAAQVAVPGRARYQRVIVAELERLYNHLHYLGHLADTTTLKVAH 244
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
G E++ R +GSR PGG+ + VE + D+ + +
Sbjct: 245 AEGALLAERVKQIGARVTGSRFLRGVIAPGGLRR---ELRVEGLAGALDALRAPIRRYIA 301
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD--FDI 247
L + R G + E A+ G +G + R SG DLR+ Y Y + D +
Sbjct: 302 RLDASESHFDRLATTGVLPREVAFDQGATGPVARASGLDRDLRRDHAYAAYDDPDLALAV 361
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
G GD + R VR+ E+ ++ +I + + G + +
Sbjct: 362 ATGTDGDAHARARVRIAEIENALLMIERAIALTPGGAIRVACAPAAGAEA---------- 411
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
E+P+G + + R KI++P +++ +
Sbjct: 412 ----------------------MGWAESPRGTLIYAVHVGPDGRLARVKIKSPSFSNWRV 449
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ G + D + S + R
Sbjct: 450 FPYTVHGTNMMDYAINEASFGLTIAGCAR 478
>gi|282165444|ref|YP_003357829.1| F420-non-reducing hydrogenase subunit A [Methanocella paludicola
SANAE]
gi|282157758|dbj|BAI62846.1| F420-non-reducing hydrogenase subunit A [Methanocella paludicola
SANAE]
Length = 470
Score = 178 bits (453), Expect = 9e-43, Method: Composition-based stats.
Identities = 53/434 (12%), Positives = 115/434 (26%), Gaps = 60/434 (13%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ ++++ V +I + RG EK ++ + +A ++ + P++
Sbjct: 13 IEGHAQITIDVEDSGKVSDARLNIMEV-RGFEKFLQGRPVEEAPRTVTQICGICPVSHHL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A A AV++ G ++R L I SH L+ A
Sbjct: 72 AAAKAVDQCFGAGTAPTATMLRELMQMGQFIHSHSLHFYFLAAPDFVFGPDADPKQRNVF 131
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
+ + R+ E G ++ + PGG+ + + + V+ +
Sbjct: 132 GIIAANPDLAVQAVKFRKIGQQIVEATGGRSINPVTYVPGGITKGLTKDDVDRLLPMAKQ 191
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSG------------- 226
L V + G +G + G
Sbjct: 192 AVEYSKATLALAKPIFNQYIDAVKLLGDADSMHLGLVKNGNLELYDGTVRLLGKDGSIVK 251
Query: 227 -------AAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRES----VKIIRQ 275
+ P+ + ++G L R+ + Q
Sbjct: 252 EFADKDYLQYIAEYVYPHSYMKAPYWKDMGWENGMYRVSPLSRINVCDQIDTPLANAELQ 311
Query: 276 CVNRLLGKNKVGPVSASDPKIVPPKRADMK--RSMESLIHHFKLYTEGYHVPVGEVYAAV 333
+ G+ + +++ A K + K +
Sbjct: 312 EFRKAFGRPAQKTLLYHYARLIELLYASEKAVELLSDPKITGKELRVPVKARAATGVGII 371
Query: 334 EAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQ-------------LADV 380
EAP+G +D + I + +A+ K L +
Sbjct: 372 EAPRGTLIHDYDTDDKGFITKANIIVATAHNNKAINVGLKNTAQKIINTPTPAEGVLNRM 431
Query: 381 SAILGSLDIVFGEV 394
++ + D F
Sbjct: 432 EMVIRAYDPCFSCA 445
>gi|219849351|ref|YP_002463784.1| nickel-dependent hydrogenase large subunit [Chloroflexus aggregans
DSM 9485]
gi|219543610|gb|ACL25348.1| nickel-dependent hydrogenase large subunit [Chloroflexus aggregans
DSM 9485]
Length = 473
Score = 178 bits (453), Expect = 1e-42, Method: Composition-based stats.
Identities = 72/439 (16%), Positives = 116/439 (26%), Gaps = 70/439 (15%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD V H+ RG E+ + F + R+ + P++
Sbjct: 13 IEGHAKISIHLDDNGNVAETRFHV-TEFRGFERFCIGRPFWEMPGITARICGICPVSHLL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA------------- 125
A A + LL ++IP + +R L + I SH L+ +
Sbjct: 72 ASARTGDALLAVQIPPAAEKLRRLMNLGQIIQSHSLSFFHLSGPDLMLGFDSEPTQRNIF 131
Query: 126 ------LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ E G ++H A+ PGGV + + I
Sbjct: 132 GLIAAEPDVARKGIRLRQFGQEVIELLGGRKIHPAWAVPGGVRSGLTESSRDRIRSAVPE 191
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ D L QR V V G G R LR
Sbjct: 192 MLTIALDAMARLKRLTEQYQREVTTFGVFPSLYL--GMVGPGGRWMHYGGKLRIIDHTGK 249
Query: 240 YSELDFDI------------PIGKHGDCYDRYLVRMMEMRESVKIIR------------- 274
D D P Y R M + R
Sbjct: 250 MLIDDLDPIDYRDVIGEAVEPWSYLKFPYIRAFGYPQGMYRVGPLARLNVCASIGTPRAD 309
Query: 275 ---QCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVG---- 327
Q + +G G +++ +E LI L + G
Sbjct: 310 AELQELREQVGPVIEGSFYYHHARLIE--IIAALEHIEMLIEDDDLLSPNLRADAGVNRY 367
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM---------EFLCKGH--- 375
E EAP+G + D + + A+ ++C G
Sbjct: 368 EAVGVSEAPRGTLFHHYRVDEKGLITDVNLIIATGQNNLAINRTVGQIAQNYICNGQFDE 427
Query: 376 -QLADVSAILGSLDIVFGE 393
L + A + + D
Sbjct: 428 GILNRIEAGVRAYDPCLSC 446
>gi|270159417|ref|ZP_06188073.1| putative (NiFe) hydrogenase alpha subunit [Legionella longbeachae
D-4968]
gi|289165772|ref|YP_003455910.1| coenzyme F420-reducing hydrogenase, alpha subunit [Legionella
longbeachae NSW150]
gi|269987756|gb|EEZ94011.1| putative (NiFe) hydrogenase alpha subunit [Legionella longbeachae
D-4968]
gi|288858945|emb|CBJ12871.1| putative coenzyme F420-reducing hydrogenase, alpha subunit
[Legionella longbeachae NSW150]
Length = 430
Score = 178 bits (453), Expect = 1e-42, Method: Composition-based stats.
Identities = 51/424 (12%), Positives = 115/424 (27%), Gaps = 43/424 (10%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
S + +IN P G L LE+ + + + I R EK +E +++ +
Sbjct: 2 SNTISINV-PILARVEGEGALELEIRNQQITALQLKIYEPPRLFEKFLEGRSYTDVLDLV 60
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG- 124
R+ + P+ + A+E I + +R L+ + SH +++ A+
Sbjct: 61 ARICGICPVAYQMTSTQAIEHCFAITASPWVREMRRLFYCGEWLESHSMHIHFLALPDFL 120
Query: 125 -----------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDI 173
G + + G +H GG ++ P ++ +
Sbjct: 121 GFKSAPEMAKHYPEELRRGMRLQAFGNDLIKLFGGRSVHPVGACVGGFYKAPNPSEIKLL 180
Query: 174 GCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRK 233
+ + L + G ++ G +
Sbjct: 181 LEQAKARVEDGEALIRWLATFSFPDNTHDFTCVSLYHPTEYPFNEGRLVSNHGLNISIDD 240
Query: 234 SQPYECYSELDFDIPIG-------KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKV 286
Y ++ + + R + + ++ Q +
Sbjct: 241 FDSYFKEKQVPYSTALHCLLQNKPYLVGPLARVNNCFGHLPAPIHLLLQDLK---INFPS 297
Query: 287 GPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV--GEVYAAVEAPKGEFGVYL 344
+ S + ++ L H+ V G + EAP+G +
Sbjct: 298 YNMYYSIIARAIEIYFCILEAIRILEHYETPKEAHPKVTPCTGIGFGCTEAPRGTLWQHF 357
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLA----------DV-----SAILGSLDI 389
D +I P + +E + ++ D+ I+ + D
Sbjct: 358 EFDTQGHVKNARIVPPTSQNQARIEEDLR---ISLNQFGLDKDEDLLRSYSEMIIRNYDP 414
Query: 390 VFGE 393
Sbjct: 415 CISC 418
>gi|288574750|ref|ZP_06393107.1| nickel-dependent hydrogenase large subunit [Dethiosulfovibrio
peptidovorans DSM 11002]
gi|288570491|gb|EFC92048.1| nickel-dependent hydrogenase large subunit [Dethiosulfovibrio
peptidovorans DSM 11002]
Length = 476
Score = 178 bits (453), Expect = 1e-42, Method: Composition-based stats.
Identities = 70/455 (15%), Positives = 127/455 (27%), Gaps = 74/455 (16%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K+ ++ +N P G ++ + LD V+ H+ RG E + + F +
Sbjct: 3 KERKTIVVN--PIT-RIEGHGKITVYLDDSGNVDETRFHV-TQFRGFEAFCKGRDFREMP 58
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
R+ + P++ A A A + +LG+ I +R L + SH L+ +
Sbjct: 59 VITPRICGICPVSHHLASAKACDAILGVTITPTAHKLRELMHMGQIVQSHALSFFHLSSP 118
Query: 123 V-------------------GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQ 163
G R+ + G ++H + PGGV++
Sbjct: 119 DLLFGFDADPAVRHVGGVARDFPELAKRGILMRKFGQELIKTLGGKKIHPWHSIPGGVNR 178
Query: 164 DIPPELVEDIGCWCDSFPSALNDISDL----LTGNRIFKQRNVNI---------GTVKLE 210
I E + A+ D +L L N ++ + G
Sbjct: 179 SIKVEERDLFLKGLPEQKEAIKDTIELIRKYLEDNGEEAKKFATLKSSYLGLVKGGKLEL 238
Query: 211 DAWGWGFSGVMIRGSG---------------AAWDLRKSQPYECYSELDFDIPIGKHGDC 255
G R + W K Y +G G
Sbjct: 239 FDGDIRLRGPRGRITDEFPDVEYLEHIGEHVEPWSYLKFPFYRSLGFPQGSYRVGPLGRV 298
Query: 256 YDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHF 315
E + +K R+ LG++ + + + ME L+
Sbjct: 299 NACDDFATPEASKELKRFRE-----LGEDGMVHYTMYTHYARLMEVLYALERMEELLLDE 353
Query: 316 KLYTEGYHV-PVG---EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME-- 369
+ V G E +EAP+G + D + + AM
Sbjct: 354 DITGSDLRVSSKGLQPEGIGVIEAPRGTLIHHYQVDEVGSVKAVNLIVATGHNNYAMNKG 413
Query: 370 -FLCKGHQL--ADV--------SAILGSLDIVFGE 393
+ + ADV ++ D
Sbjct: 414 VEMVAKEFIHGADVKEGALNRMEHVIRCYDPCLSC 448
>gi|318041120|ref|ZP_07973076.1| nickel-dependent hydrogenase large subunit [Synechococcus sp.
CB0101]
Length = 491
Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats.
Identities = 76/463 (16%), Positives = 129/463 (27%), Gaps = 85/463 (18%)
Query: 15 PQHPAA------------------HGVLRLILELD-GEIVERVDPHIGLLHRGTEKLIET 55
P HPA G ++ + LD VE H+ +RG EK E
Sbjct: 2 PSHPATDANQPPRRTITIDPVTRIEGHAKISIHLDASGAVETARFHV-TEYRGFEKFCEG 60
Query: 56 KTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLN 115
+ F + R+ + P++ A A +K+L ++IP + +R L + SH L+
Sbjct: 61 RPFTEMAGITARICGICPVSHLLAAAATGDKILAVQIPSAAEKLRRLMNLAQLTQSHALS 120
Query: 116 VTTQAMDVG-------------------ALTPPLWGFEEREKLMVFYERASGSRMHAAYF 156
+ G R+ E G ++HAA+
Sbjct: 121 FFHLSSPDFLLGWDSDPEQRNIFGLIAANPELARGGIRLRQFGQGVIEALGGRKIHAAWA 180
Query: 157 RPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLL--TGNRIFKQRNVNIGTVKLEDAWG 214
PGGV + E + I + L + ++ G
Sbjct: 181 VPGGVRSPMSIETRDQIRQGLPEAFAIAEQGLALFKQLLDGQLREELDLFGQFPSLFLGL 240
Query: 215 WGFSGVMIRGSGAAW--------------DLRKSQPYEC----------YSELDFDIPIG 250
G SG D K Y Y + + +G
Sbjct: 241 VNRDGHWEHSSGRHCAGIRVMASDGRVVADGLKEDDYATFLAEAVEPWSYLKFPYFKALG 300
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM---KRS 307
Y + + + E + R L + + G V + + ++
Sbjct: 301 PEAGSYRVGPLARLNLCERIGTERADQELLELRQRGGRVVTASFLYHLARLIEIVACLEQ 360
Query: 308 MESLIHHFKLYTEGYHVPVG----EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
ME L+ ++ G E EAP+G + D R +
Sbjct: 361 MEQLLDDPEITATHVRARAGVNCHEAVGVSEAPRGTLLHHYRVDTNGLIERVNLIIATGQ 420
Query: 364 HLQAME--------FLCKGHQLAD-----VSAILGSLDIVFGE 393
+ AM G L++ V A + D
Sbjct: 421 NNGAMNRTVTQIARHYIDGQHLSEGLLNRVEAGIRCFDPCLSC 463
>gi|289191702|ref|YP_003457643.1| nickel-dependent hydrogenase large subunit [Methanocaldococcus sp.
FS406-22]
gi|288938152|gb|ADC68907.1| nickel-dependent hydrogenase large subunit [Methanocaldococcus sp.
FS406-22]
Length = 472
Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats.
Identities = 67/440 (15%), Positives = 127/440 (28%), Gaps = 70/440 (15%)
Query: 20 AHGVLRLILELD-GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + D +++V H+ + RG EK +E + A Y R+ + +
Sbjct: 12 VEGHGKITISFDENGNLDKVHFHVVEV-RGFEKFLEGRYIEDAPIYTPRICGICQVAHHL 70
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV--------------- 123
A A AV+++ G++IP +L+R L + I SH L+ A
Sbjct: 71 ASAKAVDEVFGVKIPETAELLRNLMHQGATIHSHALHFYFLAAPDLMFPTTDDVLRRNIL 130
Query: 124 ----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
E R+ + G +H GG + + E +++ +
Sbjct: 131 GIAKEHPEIVKEAIELRKIGQTIVKVVGGRAIHPVTAVVGGQSKPLKEEERDELLKLSER 190
Query: 180 FPSALNDISDL---LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSG---AAWDLRK 233
++ L N G GV G K
Sbjct: 191 AIELSEKSIEIGKKLLENLKENDLLDIG--YFESYHLGMVNDGVHELYDGTLRVINPKGK 248
Query: 234 SQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRL------------- 280
+ SE I G Y ++ + E ++RL
Sbjct: 249 VEYEFEPSEYLNYIAEGVKPYSYLKFPYLKDKGPEEGIYRVNTLSRLNVADKMATPLAQK 308
Query: 281 --------LGKNKVGPVSASDPKIVPP--KRADMKRSMESLIHHFKLYTEGYHVPVGEVY 330
GK P+ +++ +K +E+ VGE
Sbjct: 309 YYEEFIKEFGKPCHYPMLFHYARLIELLSSAEKVKELLENDKIVDTDIRAEPEDIVGEGV 368
Query: 331 AAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLAD----------- 379
VEAP+G + +D + + AM+ + ++A+
Sbjct: 369 GCVEAPRGTLIHHFKTDEDGIITEANLIVATVQNNPAMDIGVR--KVAEKYIKSPEDATP 426
Query: 380 -----VSAILGSLDIVFGEV 394
+ ++ + D
Sbjct: 427 QVLNYMEMVIRAYDPCLSCA 446
>gi|300432250|gb|ADK12981.1| NiFe hydrogenase large subunit [Thiocapsa roseopersicina]
Length = 494
Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats.
Identities = 67/437 (15%), Positives = 128/437 (29%), Gaps = 63/437 (14%)
Query: 20 AHGVLRLILELD-GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ L LD + V++ HI + RG EK I+ + + + RL + P++
Sbjct: 25 VEGHGKVTLLLDEDDHVKQARLHI-VEFRGFEKFIQGRPYWELPVLVQRLCGICPVSHHL 83
Query: 79 AYALAVEKLLGIE-IPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV-------------- 123
A A A ++L+G++ + + +R L + SH L+ +
Sbjct: 84 AAAKACDRLIGVDRLTPTAEKVRRLMHLGQVLQSHALHFFHLSSPDLLFGIDDAVAHRNI 143
Query: 124 -----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
+ G R+ SG R+H PGGV++++ E + + D
Sbjct: 144 VGVIRDHPEIAMEGVLLRKFGQEVIRVTSGKRVHGTGALPGGVNKNVSLEERDFLLADID 203
Query: 179 SFPSALNDISDLLTGNRIFK-QRNVNIGTVKLEDAWGWGFSGVMIRGSGA---------- 227
L+ + + + V G G
Sbjct: 204 RIVDWAEKGVQLIKRIILTRADFHYRFANVDANTLSLVSPDGGFELYDGGLRARGPQGET 263
Query: 228 AWDLRKSQPYEC----------YSELDFDIPIGK-HGDCYDRYLVRMMEMRESVKIIRQC 276
+D Q Y Y + F + +G G L R+ + +
Sbjct: 264 LFDHADDQGYAELLHEEIKSWSYMKFPFIVALGPEKGWYRVGPLARVNNCERFHTPLAEQ 323
Query: 277 VNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHH--FKLYTEGYHVPVGE----VY 330
+ G + + ++ E++ GE
Sbjct: 324 ERQDFAAAGEGRPLQAALTTHWARMIELLHCAEAIRELLADPDLQGTDLRREGELQTTGI 383
Query: 331 AAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK--------GHQLAD--- 379
+EAP+G + D R + + QAM + GH L +
Sbjct: 384 GVLEAPRGTLFHHYEIDSDGLVTRANLIVSTTNNNQAMNESIRRVAADDLDGHALTEPLL 443
Query: 380 --VSAILGSLDIVFGEV 394
+ + + D
Sbjct: 444 NRIEVAIRAYDPCLSCA 460
>gi|300088378|ref|YP_003758900.1| nickel-dependent hydrogenase large subunit [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299528111|gb|ADJ26579.1| nickel-dependent hydrogenase large subunit [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 536
Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats.
Identities = 73/510 (14%), Positives = 131/510 (25%), Gaps = 137/510 (26%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E++ ++ G + RG EK+++ + A R+ V A
Sbjct: 12 IEGHLRIEVEVENGVITDA-WSAGTMARGWEKILQGRDPWDAPYVTSRVCGVCEGVHTIA 70
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILS---HLLNVTTQAMDVGA----------- 125
A+E GIE+ G+L+R L+S + H ++
Sbjct: 71 SNQAIEDAFGIELTEAGRLMRNLFSAGYYVHDHFIHFYVLSALDFLDIMAIASYEGSDPG 130
Query: 126 ----------------------------------------LTPPLWGFEEREKLMVFYER 145
++ L E + K
Sbjct: 131 LLAVKSKIVGLVSAGDTSPFTPRYTPDEFSVNDPETVTTLVSHYLKAIELKAKSQKMLSY 190
Query: 146 ASGSRMHAAYFRPGGVHQDIPPELVEDIGC-WCDSFPSALNDISDLL------------- 191
+G + H PGG E+++D+ W + N +
Sbjct: 191 LTGIQPHPNALMPGGCTATPSVEVLQDLRKLWQEQADFVNNVYVPDVMAVGYGPLLPLAA 250
Query: 192 -----TGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA------------------A 228
T + G +G S M RG
Sbjct: 251 SGFGATNGNYLAFPMLPQGGSASAGDISFGGSNPMFRGGVVKANGERASRTDISNLTVED 310
Query: 229 WDLRKSQPYECYSELDFDIPIG---------------KHGDCYDRYLVRMMEMRESVKII 273
D + YS D+ + + + + E E +
Sbjct: 311 VDYSQITESVTYSWYDYPAGVDALHPSEGVTDFNLQKQDAYSFLKAPRYNAETMEVGPLA 370
Query: 274 R-------QCVNRLLGKNKVGPVSASDPK------IVPPKRADMKRSME-SLIHHFKLYT 319
R + V+ + G V+ + I+ A + R +E L
Sbjct: 371 RGMVNQFPELVDFFNAGGREGVVARHLSRAVISKQIINDGLAWIDRLIEMRLAGPLVGMN 430
Query: 320 EGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEF 370
E G +AP+G G ++ D + ++ P + E
Sbjct: 431 EKPVPKTGRGMGVWDAPRGALGHWIEVD-NWRIKNYQMVVPSTWNAGPRDENGVKGPYEQ 489
Query: 371 LCKGHQLAD------VSAILGSLDIVFGEV 394
G + D V I+ S D
Sbjct: 490 ALIGAPVPDLDNPINVVRIIRSFDPCIACA 519
>gi|147920871|ref|YP_685322.1| coenzyme F420-non-reducing hydrogenase (methyl viologen-reducing
hydrogenase), alpha subunit [uncultured methanogenic
archaeon RC-I]
gi|110620718|emb|CAJ35996.1| coenzyme F420-non-reducing hydrogenase (methyl viologen-reducing
hydrogenase), alpha subunit [uncultured methanogenic
archaeon RC-I]
Length = 471
Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats.
Identities = 61/434 (14%), Positives = 124/434 (28%), Gaps = 60/434 (13%)
Query: 20 AHGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ +++D +I + RG EK ++ + +A ++ + P++
Sbjct: 13 IEGHAQITIDVDDNNKATDARLNIMEI-RGFEKFLQGRAVEEAPRIVTQICGICPVSHHL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP---------- 128
A A AV++ G+E P ++R L I SH L+ TP
Sbjct: 72 AAAKAVDECFGVEAPQTANMLRELMQYGQYIHSHSLHFYFLGAPDFVFTPDGNPTQRNVF 131
Query: 129 ---------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
R+ E +G ++ + PGG+ + + V+ +
Sbjct: 132 GIVGANPALATEAVMFRKIGQQIVEATAGRSINPVTYIPGGISKGLTQADVDRLLPMAKQ 191
Query: 180 --------------FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAW--GWGFSGVMIR 223
+ D LL V G ++L D G G +I+
Sbjct: 192 AVTYAQNALALAKPIFNQYIDAIKLLGEAESMHMGLVKNGNLELYDGMLRLQGKDGSIIK 251
Query: 224 G----SGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRES----VKIIRQ 275
+ P+ + ++G L R+ + Q
Sbjct: 252 EFKPQDYLQYISEYVYPHSYMKAPYWKEMGWENGMYRVSPLSRINVCDQIDTPLANAELQ 311
Query: 276 CVNRLLGKNKVGPVSASDPKIVPPKRADMK--RSMESLIHHFKLYTEGYHVPVGEVYAAV 333
+ G+ + +++ A K + + K +
Sbjct: 312 EFRKAFGRPAQMTLLYHYARLIELLYASEKAVELLSNKAITGKELRVPVKARAATGVGVI 371
Query: 334 EAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGH-------------QLADV 380
EAP+G +D + I + +A+ K L +
Sbjct: 372 EAPRGTLIHDYDTDEKGMITKANIIVATAHNNKAINLGLKNTAQKIINSPTPEEGILNRM 431
Query: 381 SAILGSLDIVFGEV 394
++ + D F
Sbjct: 432 EMVIRAYDPCFSCA 445
>gi|315426447|dbj|BAJ48085.1| nickel-dependent hydrogenase large subunit [Candidatus
Caldiarchaeum subterraneum]
gi|315426459|dbj|BAJ48092.1| nickel-dependent hydrogenase large subunit [Candidatus
Caldiarchaeum subterraneum]
Length = 428
Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats.
Identities = 51/407 (12%), Positives = 116/407 (28%), Gaps = 34/407 (8%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L +++ G+ V V I R E + + + A R+ + P+ + +
Sbjct: 13 VEGEGALYVKVRGDEVVDVKFKIFEPPRLFEAFLIGRMYYDAPDITARICGICPVAYQMS 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEERE-- 137
A+E L G+ + + +R L I SH+L+ +R
Sbjct: 73 SIHAMENLFGVVVEPAVRELRRLLYCGEWIESHMLHAFLLHAPDFLGYDDALKMAKRHPD 132
Query: 138 ----------KLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
R G +H GG ++ + ++ ++
Sbjct: 133 VVKKALKAKKIGNDVVARLGGREIHPVSACVGGFYRVPSKRELAELRPSLIEGLKITEEL 192
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ + G + G ++ G + + + + ++
Sbjct: 193 LEWVAGLEFPEFEQDYEFVALRHPDEYPMNEGRIMSNKGLDITVDQYENHFAEEQVPHSN 252
Query: 248 PIGKHGDCY-DRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ + + + + ++ + L + P + K + + A+
Sbjct: 253 ALHSYIIGRGAYMVGPLSRINLNIDKLHDLTKTALERIGFKPPCRNPFKSIIARVAETLY 312
Query: 307 SMESLIHHFKLYTEGYH------VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ E + Y+E V G EAP+G D + KI P
Sbjct: 313 AFEEALRIVDTYSEPRVARVELSVRAGRGCGCTEAPRGILYHRYDVDEHGRILSAKIVPP 372
Query: 361 GYAHLQAMEFLCKGHQLA-------------DVSAILGSLDIVFGEV 394
+ +++E + +LA + + D
Sbjct: 373 TAQNQKSIEEDLR--KLAPKIIKLPRSQAVWRFEQAIRNYDPCISCA 417
>gi|268318132|ref|YP_003291851.1| nickel-dependent hydrogenase large subunit [Rhodothermus marinus
DSM 4252]
gi|262335666|gb|ACY49463.1| nickel-dependent hydrogenase large subunit [Rhodothermus marinus
DSM 4252]
Length = 433
Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats.
Identities = 54/408 (13%), Positives = 106/408 (25%), Gaps = 40/408 (9%)
Query: 28 LELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKL 87
+ + V V I R E + ++FL+A R+ + P+ + + A+E
Sbjct: 26 VRIRNNQVTDVRLRIYEPPRFFEAFLRGRSFLEAPDITARICGICPVAYQMSACTAMENA 85
Query: 88 LGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG------------ALTPPLWGFEE 135
G+E+ +L+R L I SH L+V G +
Sbjct: 86 CGVEVNGPLRLLRRLLYCGEWIESHTLHVFMLHAPDFLGYESALEMARDYPDRVQQGLQL 145
Query: 136 REKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNR 195
++ G +H R GG ++ P+ + + D + G
Sbjct: 146 KKIGNELMRVIGGREIHPINVRVGGFYRAPRPDELRALVEPLRWARETAYDTVRWVAGFE 205
Query: 196 IFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKH--- 252
D G ++ G + + + +
Sbjct: 206 FPDFEQDYEFVALRRDDEYAILDGRLVSNRGLDIPIAAFNDHIEEEHVPHSNALHARIRG 265
Query: 253 ---GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKI--VPPKRADMKRS 307
+ R S P + + + + R
Sbjct: 266 RGAYLVGPLARFNLNFDRLSPLAQEAAREVGFLPECRNPFKSIIARAVEILYACDEALRL 325
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
+E+ + + E + EAP+G + D +I P + +
Sbjct: 326 IEAYEPPEQPFVEVP-PRAATGHGCTEAPRGILYHRYVIDDEGTILEAQIVPPTSQNQRR 384
Query: 368 MEFLC-----KGHQLAD------VSAILGSLDIVFGE--------VDR 396
+E + L D + + D VDR
Sbjct: 385 IEEDLRAFVARALTLPDDELQWRCEQAIRNYDPCISCATHFLKLEVDR 432
>gi|312113760|ref|YP_004011356.1| nickel-dependent hydrogenase large subunit [Rhodomicrobium
vannielii ATCC 17100]
gi|311218889|gb|ADP70257.1| nickel-dependent hydrogenase large subunit [Rhodomicrobium
vannielii ATCC 17100]
Length = 485
Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats.
Identities = 64/482 (13%), Positives = 118/482 (24%), Gaps = 104/482 (21%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
GP + G L + L+++ + + L+RG E+++ K A+ Y R+ +
Sbjct: 6 VGPFN-RVEGDLEIRLDVEDGRIAAAYVNSP-LYRGFEQILVGKAPADALVYVPRICGIC 63
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP--- 129
++Q A A A+ G+ P G ++ + + HL + M A
Sbjct: 64 SVSQSIAAAAALANSQGLTPPENGTHLQNIILAAENVADHLTHFYLFFMPDFAREIYAGE 123
Query: 130 -----------------LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVED 172
R + +G H +PGG + I
Sbjct: 124 PWAKAAARFRAMGGDAQREFLPARAAFLRIMGLLAGHWPHTLGLQPGGTTRAIGRAEQTR 183
Query: 173 IGCWCDSFPSALNDIS---------------------------------DLLTGNRI--- 196
+ L
Sbjct: 184 LLGHIAGLRRFLEATFYGDALEAVGALDSADALDAWAAEGAAEASGGDFRAFLAFSRDAG 243
Query: 197 -------------FKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQ------PY 237
F ++N G W G G + A R P
Sbjct: 244 LEALGPGPGLYISFGAYSLNGGHAFAHGVWQGGAVGPLRWEDIAEDHARAWMVRAAEGPR 303
Query: 238 ECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIV 297
+ + + + E+ RQ ++ + S S+ +
Sbjct: 304 PPSRGITLPDADAADAYSWCKAPRLGGRVAETGAFARQLIDGQPLVTSLAARSGSNARNR 363
Query: 298 PPKRAD--------MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGG 349
RA ++ ++ +EA +G G +L
Sbjct: 364 MIARAVEVARLVLLLESWAAAIRPDEPFCLATPMPEEAHGIGMIEAARGSLGHWLDIR-K 422
Query: 350 NKPYRCKIRAPGYAHLQ---------AMEFLCKG--------HQLADVSAILGSLDIVFG 392
+ + +I AP + A E G +A V I+ S D
Sbjct: 423 GRIFNYQIIAPTTWNFSPRDGGGQPGACEAALVGAPVRRGETTPIA-VQHIVRSFDPCMV 481
Query: 393 EV 394
Sbjct: 482 CT 483
>gi|148259620|ref|YP_001233747.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Acidiphilium cryptum
JF-5]
gi|146401301|gb|ABQ29828.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Acidiphilium cryptum
JF-5]
Length = 476
Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats.
Identities = 77/389 (19%), Positives = 136/389 (34%), Gaps = 37/389 (9%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ FGP GE + PH+ L HRG E +T + +R+
Sbjct: 123 VLPFGPVRAGVVESAEFSFFYVGEAILHYVPHLFLKHRGMEDRFVDQTPETGLVLAERVS 182
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
V + AYA A+E + +P R + RV+ +E+ R+ +HL + A
Sbjct: 183 GVGSVAHALAYAQAMEAAAQVAVPGRARYQRVIVAELERLYNHLHYLGHLADTTTLKVAH 242
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
G E++ R +GSR PGG+ + VE + D+ + +
Sbjct: 243 AEGALLAERVKQIGARVTGSRFLRGVIAPGGLRR---ELRVEGLAGALDALRAPIRRYIA 299
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD--FDI 247
L + R G + E A+ G +G + R SG DLR+ Y Y + D +
Sbjct: 300 RLDASESHFDRLATTGVLPREVAFDQGATGPVARASGLDRDLRRDHAYAAYDDPDLALAV 359
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
G GD + R VR+ E+ ++ +I + + G + +
Sbjct: 360 ATGTDGDAHARARVRIAEIENALLMIVRAIALTPGGAIRVACAPAAGAEA---------- 409
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
E+P+G + + R KI++P +++ +
Sbjct: 410 ----------------------MGWAESPRGTLIYAVHVGPDGRLARVKIKSPSFSNWRV 447
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ G + D + S + R
Sbjct: 448 FPYTVHGTNMMDYAINEASFGLTIAGCAR 476
>gi|119944966|ref|YP_942646.1| nickel-dependent hydrogenase, large subunit [Psychromonas
ingrahamii 37]
gi|119863570|gb|ABM03047.1| nickel-dependent hydrogenase, large subunit [Psychromonas
ingrahamii 37]
Length = 499
Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats.
Identities = 56/439 (12%), Positives = 129/439 (29%), Gaps = 67/439 (15%)
Query: 20 AHGVLRLILELDGEI-VERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ L +D +++ HI RG E+ I+ + + + RL + P++
Sbjct: 29 VEGHGKVTLLVDDNNQIQQCRLHIAE-FRGFERFIQGRPYWEIPILVQRLCGICPVSHHI 87
Query: 79 AYALAVEKLLGI-EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG------------- 124
A A++ + G+ E+ +R+L + SH L+
Sbjct: 88 AAGKAIDMISGVTELTESAYKLRLLLHYGQTLQSHALHFFHLCSPDFLFGFESELAGRNI 147
Query: 125 ------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
L G + R+ G R+H PGG+++ + E + +
Sbjct: 148 VGVIQKHPELALQGVKLRKYGQEVIRVICGKRIHGTGCIPGGMNKPLSREDKHYLLGDTE 207
Query: 179 SFPSALNDIS----DLLTGNRIFKQRNVNIGTVKLEDAWGWG-------------FSGVM 221
+ D N F + + + L G SG +
Sbjct: 208 QIIAWAECAVKTARDCYLANEPFHKNFAGLRSNYLSLVGDKGELNLYHGKLRLKDASGNL 267
Query: 222 IRG--SGAAWDLRKSQPYECYSELDFDIP-------IGKHGDCYDRYLVRMMEMRESVKI 272
+ + + + ++ + F R ++
Sbjct: 268 LFDKQDYCDYQNLIQEEVKSWTYMKFPFIKTMGKESGWYRTGPLARVNNCDYIPTPLAEM 327
Query: 273 IRQ-CVNRLLGKNKVGPVSASDPKIVPP--KRADMKRSM-ESLIHHFKLYTEGYHVPVGE 328
RQ V + ++ +++ +K+ + + +I L +G E
Sbjct: 328 ARQEFVAYGGKEPVHSTLAYHWARMIEVLFSAEKIKQLLFDPMITGKDLIVQGKR--QSE 385
Query: 329 VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK--------GHQLA-- 378
VEAP+G + + + + + A+ + G +++
Sbjct: 386 GIGVVEAPRGTLIHHYQVGEDDLITKANLIVATTHNNTALNESIRIVCTQQINGREISEK 445
Query: 379 ---DVSAILGSLDIVFGEV 394
++ + + D
Sbjct: 446 VLNNIEVAIRAYDPCLSCA 464
>gi|260430127|ref|ZP_05784102.1| putative [NiFe] hydrogenase alpha subunit containing protein
[Citreicella sp. SE45]
gi|260419050|gb|EEX12305.1| putative [NiFe] hydrogenase alpha subunit containing protein
[Citreicella sp. SE45]
Length = 429
Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats.
Identities = 59/405 (14%), Positives = 116/405 (28%), Gaps = 30/405 (7%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L ++L G+ +E ++ I R E L+ + A R+ + P+ +
Sbjct: 14 VEGEGALYVKLRGQEIETLEFRIFEPPRFFEALLRGRPATDAPDITSRICGICPVAYVMS 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP----------- 128
+ AVE+ LGI IP + +R L I SH+L+ P
Sbjct: 74 ASQAVEQALGIAIPAEIRALRRLIYCGEWIQSHVLHAAMLHAPDFLGLPDAMEIARAEPG 133
Query: 129 -PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
++ E G +H R GG ++ + + + + A D+
Sbjct: 134 LVRTALRLKKLGNTLMEVIGGRAVHPVNTRVGGFYRAPDADRIAALVPELEWGAGAARDM 193
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ + G + G + S++
Sbjct: 194 ALAFARFEFPDDAADYTFVSLVNPDEYPILEGRIGSNRGLDIGIDAFSGSVRESQVAHSN 253
Query: 248 PIGKH-GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM-K 305
+ H D + + + + + R + +GPV + K + + ++
Sbjct: 254 ALHAHLADGTPYMVGPLARYANNHDRLPEACRRTAREAGLGPVERNPFKSILVRMIEVQF 313
Query: 306 RSMESLIHHFKLYTEGYHV-----PVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+E+L G + EAP+G + D I P
Sbjct: 314 ACLEALRLVRSYVAPAPARVEAPQRAGAGFGCTEAPRGICHHSYVLDDDGTLVSASIVPP 373
Query: 361 GYAHLQAMEFLCKGHQLA------DVSA-----ILGSLDIVFGEV 394
+ +E L+ D + + D
Sbjct: 374 TSQNQPQIEADLARVVLSSLDLDDDALRQRCEQTIRNYDPCISCA 418
>gi|282895626|ref|ZP_06303751.1| Nickel-dependent hydrogenase, large subunit [Raphidiopsis brookii
D9]
gi|281199320|gb|EFA74185.1| Nickel-dependent hydrogenase, large subunit [Raphidiopsis brookii
D9]
Length = 482
Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats.
Identities = 69/444 (15%), Positives = 121/444 (27%), Gaps = 71/444 (15%)
Query: 20 AHGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD E V+ H+ RG EK + F + R+ + P++
Sbjct: 12 IEGHAKISIYLDDEGHVDDARFHV-TEFRGFEKFCVGRPFPEMPGITARICGICPVSHLL 70
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A A +K+L + IP +R L + I SH L+ +
Sbjct: 71 ASAKTGDKILSVTIPEVATKLRRLMNLGQIIQSHALSFFHLSAPDLLLGMDSEPAKRNVF 130
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ E G ++H A+ PGGV + E I
Sbjct: 131 GLIGVDPELARGGIRLRQFGQEIIELLGGKKIHPAWAVPGGVSDPLTTENRSHIQNRIPE 190
Query: 180 FPSALNDISDLLTG-NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAW--------- 229
S + + L +++ G G+ G
Sbjct: 191 AKSTVLNAIALFKKLLENYQKEAQTFGNFPSLFMGLVTPQGLWETYDGHLRFVDSGGNIV 250
Query: 230 -DLRKSQPYECY--SELDFDIPIGKHGDCYDRYLVRMMEMR-ESVKIIRQCVNRL----- 280
D ++ Y + + D + Y R +S + RL
Sbjct: 251 ADKLEADNYHEFIGEAVQEDSYLKSPYYRPLGYPDSKDHCRLDSGMYRVGPLARLNICSQ 310
Query: 281 ------------LGKNKVGPVSASDPKIVPPKRADMK--RSMESLIHHFKLYTEGYHVPV 326
G V +S + +E L+ + +
Sbjct: 311 IGTPLADQELREFRTYGSGTVKSSFFYHYARLIEILASVEHIEILLDDPDILSTRLRAAA 370
Query: 327 G----EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME--------FLCKG 374
G E EAP+G + D + + + AM +G
Sbjct: 371 GINRLEAVGVSEAPRGTLFHHYRIDENGLIQKVNLIIATGQNNLAMNRTVAQIARHFIQG 430
Query: 375 HQLAD-----VSAILGSLDIVFGE 393
Q+ + V A + + D
Sbjct: 431 SQIQEGMLNRVEAGIRAFDPCLSC 454
>gi|116750142|ref|YP_846829.1| nickel-dependent hydrogenase large subunit [Syntrophobacter
fumaroxidans MPOB]
gi|116699206|gb|ABK18394.1| nickel-dependent hydrogenase, large subunit [Syntrophobacter
fumaroxidans MPOB]
Length = 479
Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats.
Identities = 61/441 (13%), Positives = 109/441 (24%), Gaps = 69/441 (15%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ ++LD V H+ + RG EK +T+ + R+ + P++
Sbjct: 13 IEGHGKIRIQLDDAGQVADAKFHV-VEFRGFEKFCVGRTYPEMPGITMRICGICPISHML 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD---------------- 122
A A A + + G+ IP +R L + SH L+ +
Sbjct: 72 ASAKACDAIAGVRIPPAANKLRRLINHAQYTQSHALSFFHLSAPDLLLGMESEPATRNVV 131
Query: 123 ---VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
+ A G R+ +H A+ PGGV + + E V+ I
Sbjct: 132 GLILKAPDLARKGIRLRQFGQEIIRMIGTKSVHPAWAVPGGVREALSAENVQKIKAMLPE 191
Query: 180 FPSALNDISDLLTGN-RIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA----------- 227
DLL N F G + G + G
Sbjct: 192 AFQTTEIALDLLKDNYDKFSAEVKTYGDFPSKFIGLVTPEGGLEHYDGLLRVMDSDGRII 251
Query: 228 ------------------AWDLRKSQPYEC--YSELDFDIPIGKHGDCYDRYLVRMMEMR 267
W K Y+ Y +G
Sbjct: 252 EPGLHNDRYREIIAEAVEDWSYLKFPYYKPGGYGTDAGLYRVGPLARLNICDFAGTPRAD 311
Query: 268 ESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVG 327
++ R+ + + + + +E
Sbjct: 312 RELRQFRRLGDGGRVVTSSFHSHYARLIEIMFSLEKIAELVEDPDLIGGRLRHYGGANEE 371
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME---------------FLC 372
+ +EAP+G D + + + QAM +
Sbjct: 372 KGVGIMEAPRGTLFHEYDVDEDGIIKKVNLIVATGNNNQAMNKTVLQIARAYMNGKKEIT 431
Query: 373 KGHQLADVSAILGSLDIVFGE 393
+G V + D
Sbjct: 432 EGLM-NRVEHGIRLYDPCLSC 451
>gi|326385677|ref|ZP_08207307.1| nickel-dependent hydrogenase, large subunit [Novosphingobium
nitrogenifigens DSM 19370]
gi|326209835|gb|EGD60622.1| nickel-dependent hydrogenase, large subunit [Novosphingobium
nitrogenifigens DSM 19370]
Length = 488
Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats.
Identities = 66/482 (13%), Positives = 124/482 (25%), Gaps = 104/482 (21%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
GP + G L + L+L G+ VE L+RG E ++ + + A+ Y R+ +
Sbjct: 9 VGPFN-RVEGDLEVRLDLAGDHVEAARVTSP-LYRGFEAMLVGRPAMDALVYAPRICGIC 66
Query: 73 PMNQEHAYALAV-----EKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL- 126
++Q A A A+ L +P G L + + HL + M A
Sbjct: 67 SVSQSVAAARALAGVRPTGLERRPLPANGAHATNLVHAVENLADHLTHFYLFFMPDFARA 126
Query: 127 --------------------TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIP 166
T + R LM +G H +PGG + I
Sbjct: 127 TYAEEPWHAGAAERFTALKGTAAVQVLPARAGLMNLMGILAGKWPHTLSIQPGGSTRAIT 186
Query: 167 PELVEDIGCWCDSFPSAL------------------NDISDLLTGNRIFKQRNVNIG--- 205
+ F + + + G+ R V I
Sbjct: 187 RAEQARLRLMIAGFRAFCETHLFAAPLEQVATLAHRDALYAWAEGSSGDFARFVMISRAL 246
Query: 206 ---------TVKLEDAWGWGFSGVM-------------------IRGSGAAWDLRKSQPY 237
+ G + + + +
Sbjct: 247 DLARLGRTSLRHIAFGAYPSEDGPLFPRGMFDAGIGTAAHLPLSAITEDVSHAWYRGESG 306
Query: 238 ECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL------GKNKVGPVSA 291
+ + + E + RQ V + +
Sbjct: 307 TPGKAAPVPDMGNPDAYSWCKAPRLDGRVAEVGALSRQLVAGHPLLRDMVAREGASVEAR 366
Query: 292 SDPKIVPPKRA--DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGG 349
+++ M++ + ++ + G+ EA +G G +L DG
Sbjct: 367 VVARVIEIALVTMAMEQWIAAIDPQAPFQDTSPRLETGDSMGLTEAARGSLGHWLRLDG- 425
Query: 350 NKPYRCKIRAPGYAHLQ---------AMEFLCKGHQL--------ADVSAILGSLDIVFG 392
+ +I AP + +E G + A V ++ S D
Sbjct: 426 GRITHYQIIAPTTWNFSPRDAAGTPGPLEQALVGAPIRPGETEPVA-VQHVVRSFDPCMV 484
Query: 393 EV 394
Sbjct: 485 CT 486
>gi|148657642|ref|YP_001277847.1| nickel-dependent hydrogenase large subunit [Roseiflexus sp. RS-1]
gi|148569752|gb|ABQ91897.1| nickel-dependent hydrogenase, large subunit [Roseiflexus sp. RS-1]
Length = 474
Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats.
Identities = 60/437 (13%), Positives = 107/437 (24%), Gaps = 66/437 (15%)
Query: 20 AHGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD + V H+ RG E+ E + F + R+ + P++
Sbjct: 13 IEGHAKISIHLDDDGNVAEARFHV-TEFRGFERFCEGRPFWEMPGITARICGICPVSHLL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV--------------- 123
A A A + +L + IP + +R L + + SH L+ +
Sbjct: 72 ASAKAGDAILSVVIPPAAEKLRRLMNLGQIVQSHALSFFHLSAPDLLLGFDSDPATRNVF 131
Query: 124 ----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
T G R+ GS++H A+ PGGV I
Sbjct: 132 GLMAADPTLARAGIRLRQLGQDIIALLGGSKIHPAWAVPGGVRSAPTAAQRAGIIERLPE 191
Query: 180 FPSALNDISDLLTG-NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA----------- 227
+ + D G G +G G
Sbjct: 192 ARATVLDALRRFKALLDTHADEVATFGNFPSLFLGLVGPNGEWEHYDGRLRVVDSGGAII 251
Query: 228 ------------------AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRES 269
W K Y +G + +
Sbjct: 252 ADQVDPSRYRDIIAEAIEPWSYLKMPYYRPRGYPGGMYRVGPLARLNICTRIGTLLADAE 311
Query: 270 VKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEV 329
+ +RQ + + + ++ V E
Sbjct: 312 LGEMRQ--RAGGIATSSFYYHYARLIEILAALERISLILDDPDLDSPRLRAEAGVNRFEG 369
Query: 330 YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME--------FLCKGHQLAD-- 379
EAP+G + D R + + AM G ++ +
Sbjct: 370 VGVSEAPRGTLFHHYTVDAHGLIQRVNLIIATGHNNLAMNRTIAQIARHFVHGDRIGEGA 429
Query: 380 ---VSAILGSLDIVFGE 393
V A + + D
Sbjct: 430 LNRVEAGIRAYDPCLSC 446
>gi|15679145|ref|NP_276262.1| methyl viologen-reducing hydrogenase, alpha subunit
[Methanothermobacter thermautotrophicus str. Delta H]
gi|41017306|sp|Q50783|MVHA_METTH RecName: Full=F420-non-reducing hydrogenase subunit A; AltName:
Full=Methyl viologen-reducing hydrogenase subunit alpha;
Short=MVH subunit A
gi|2622238|gb|AAB85623.1| methyl viologen-reducing hydrogenase, alpha subunit
[Methanothermobacter thermautotrophicus str. Delta H]
Length = 472
Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats.
Identities = 68/436 (15%), Positives = 119/436 (27%), Gaps = 62/436 (14%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD VE H+ + RG EK ++ + +A R+ + +
Sbjct: 12 IEGHAKITVHLDDAGNVEDTRLHV-MEFRGFEKFLQGRPIEEAPRIVPRICGICDVQHHL 70
Query: 79 AYALAVEKLLGIEIP---IRGQLIRVLYSEIGRILSHLLNVTTQAMDVG----------- 124
A A AV+ G E +R + + + SH L+ A
Sbjct: 71 AAAKAVDACFGFEPEDVLPAAYKMREIMNWGSYMHSHGLHFYFLAAPDFIAGKDRKTRNV 130
Query: 125 ------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
A L E R+ + G +H PGG+ ++ E +D+
Sbjct: 131 FQIIKDAPDIALQAIELRKNALELVRATGGRPIHPTSSTPGGISTELDDETQKDLLKKAQ 190
Query: 179 SFPSALNDISDLL---------TGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAW 229
+L N + + G VK + + G +
Sbjct: 191 RNVELAEATLELAVPIFEENIDLVNSLGNIETYHTGLVKDGVWDVYDGIVRIKDKEGNMF 250
Query: 230 DLRKSQPYE--------CYSELDFDIP--IGKHGDCY-----DRYLVRMMEMRESVKIIR 274
K Y YS L F +G Y R V + K
Sbjct: 251 REFKPADYADTIAEHVKPYSWLKFPYIKDLGYPDGVYRVSPLSRLNVADKMPDAAPKAQE 310
Query: 275 QC--VNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAA 332
G + + I A+ + + + G+
Sbjct: 311 HFKEFRENFGYAQQTLLYHWARLIELLACAECAADALEGDLSGEKFPDSLERQAGDGVGI 370
Query: 333 VEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLC---------KGHQLAD---- 379
VEAP+G + D + I + AME G ++ D
Sbjct: 371 VEAPRGTLTHHYTCDENGLITKANIVVATIQNNPAMEMGIQKVAQDYIKPGVEVDDKIFN 430
Query: 380 -VSAILGSLDIVFGEV 394
+ ++ + D
Sbjct: 431 LMEMVIRAYDPCLSCA 446
>gi|37362773|gb|AAQ91344.1| HoxH [Arthrospira platensis FACHB791]
Length = 450
Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats.
Identities = 61/442 (13%), Positives = 118/442 (26%), Gaps = 74/442 (16%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD VE H+ + RG EK E + + R+ + P++
Sbjct: 6 IEGHAKISIYLDDAGEVEDARFHV-VKFRGFEKFCEGRPMFEMAGITARICGICPVSHLL 64
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A A +K+L +++P G+ +R + + SH L+ +
Sbjct: 65 AAAKTGDKILAVQVPPAGEKLRRMMNLAQLTQSHALSFFHLSSPDFLLGWDSDPAKRNVF 124
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ E ++HAA+ PGGV + E +E I
Sbjct: 125 GLIAADPDLARAGIRLRQFGQTVIELLGARKIHAAWAVPGGVRSPLSQEGLEWIKDRLPE 184
Query: 180 FPSALND----------------------ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF 217
L G + G
Sbjct: 185 ARQTTELALNLLKRLLDSDLASEVDIFGKFPSLFMGLVAPNGNWEHYGGHLRFIDSDGNI 244
Query: 218 SGVMIRGSGA---------AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRE 268
+ W K Y+ D +G + +
Sbjct: 245 VADGLSEDNYQDYLGEAVENWSYLKFPYYKPLGYPDGIYRVGPLARLNVCDQIGTPDADR 304
Query: 269 SVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVG- 327
++ R +R + ++V ++E+L+ + + G
Sbjct: 305 ELREFR---DRAGSRVATSSFFYHYARLVEIMACI--EAIEALVEDPDITSSRVRADAGI 359
Query: 328 ---EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFL--------CKGHQ 376
E EAP+G + + + + + AM G++
Sbjct: 360 NNLEGVGVSEAPRGTLFHHYKVNENGLIQKVNLIIATGQNNLAMNKTVTQIAKHYIHGNE 419
Query: 377 LAD-----VSAILGSLDIVFGE 393
+ + V A + D
Sbjct: 420 IPEGLLNRVEAGIRCFDPCLSC 441
>gi|149733|gb|AAB02351.1| mvhA [Methanothermobacter thermautotrophicus]
Length = 472
Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats.
Identities = 68/436 (15%), Positives = 119/436 (27%), Gaps = 62/436 (14%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD VE H+ + RG EK ++ + +A R+ + +
Sbjct: 12 IEGHAKITVRLDDAGNVEDTRLHV-MEFRGFEKFLQGRPIEEAPRIVPRICGICDVQHHL 70
Query: 79 AYALAVEKLLGIEIP---IRGQLIRVLYSEIGRILSHLLNVTTQAMDVG----------- 124
A A AV+ G E +R + + + SH L+ A
Sbjct: 71 AAAKAVDACFGFEPEDVLPAAYKMREIMNWGSYMHSHGLHFYFLAAPDFIAGKDRKTRNV 130
Query: 125 ------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
A L E R+ + G +H PGG+ ++ E +D+
Sbjct: 131 FQIIKDAPDIALQAIELRKNALELVRATGGRPIHPTSSTPGGISTELDDETQKDLLKKAQ 190
Query: 179 SFPSALNDISDLL---------TGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAW 229
+L N + + G VK + + G +
Sbjct: 191 RNVELAEATLELAVPIFEENIDLVNSLGNIETYHTGLVKDGVWDVYDGIVRIKDKEGNMF 250
Query: 230 DLRKSQPYE--------CYSELDFDIP--IGKHGDCY-----DRYLVRMMEMRESVKIIR 274
K Y YS L F +G Y R V + K
Sbjct: 251 REFKPADYADTIAEHVTPYSWLKFPYIKDLGYPDGVYRVSPLSRLNVADKMPDAAPKAQE 310
Query: 275 QC--VNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAA 332
G + + I A+ + + + G+
Sbjct: 311 HFKEFRENFGYAQQTLLYHWARLIELLACAECAADALEGDLSGEKFPDSLERQAGDGVGI 370
Query: 333 VEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLC---------KGHQLAD---- 379
VEAP+G + D + I + AME G ++ D
Sbjct: 371 VEAPRGTLTHHYTCDENGLITKANIVVATIQNNPAMEMGIQKVAQDYIKPGVEVDDKIFN 430
Query: 380 -VSAILGSLDIVFGEV 394
+ ++ + D
Sbjct: 431 LMEMVIRAYDPCLSCA 446
>gi|116750955|ref|YP_847642.1| nickel-dependent hydrogenase large subunit [Syntrophobacter
fumaroxidans MPOB]
gi|116700019|gb|ABK19207.1| nickel-dependent hydrogenase, large subunit [Syntrophobacter
fumaroxidans MPOB]
Length = 469
Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats.
Identities = 67/449 (14%), Positives = 119/449 (26%), Gaps = 71/449 (15%)
Query: 10 TINFGPQHPAAHGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
IN P G R+ + LD E V HI + RG EK IE + + R+
Sbjct: 23 VINIQPVT-RIEGHARIAVHLDDEGNVADARVHIMSM-RGFEKFIEGRPAEEVPRIVTRI 80
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA--- 125
+ P A + AV+ G +P G+ +R L + I +L+ A
Sbjct: 81 CGICPWQHHVASSKAVDGCFGASVPSAGRKLRELMQVMAHINDKILHFFFLAAPDFLLGS 140
Query: 126 ----------------LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL 169
+ R + ER +G +H PGG + +
Sbjct: 141 DSEYSVRNIMGIAEKSPKLAEKVVQMRYLGQMMMERFAGKAIHPVAVVPGGFSKPMVESE 200
Query: 170 VEDIGCWCDSFPSALNDISDLLTG--NRIFKQRNVNIGTVKLEDAWGWG-FSGVMIRGSG 226
+++ D IG + G + G
Sbjct: 201 RQELLAGSRQQLEFARYAMDFAKSRVFSATDPTTKRIGDITTGFLGTVSPADGSLNLYEG 260
Query: 227 AAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVK----------IIRQC 276
+R + +S ++ IG+H + + C
Sbjct: 261 LLRLMRPDGSFHEFSSREYADFIGEHVEPWSYGKFPFAHAWGEGFSMDLEQPRGVYRTNC 320
Query: 277 VNRL---------------------LGKNKVGPVSASDPKIVP--PKRADMKRSMESLIH 313
+ R+ G+ + +++ + +ES
Sbjct: 321 LARINVADRIDTPLAQAELVEFRSEFGRPAQSTMLYHRARMIELLHACEKVVELLESPDI 380
Query: 314 HFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK 373
+ G VEAP+G +D R + +L + K
Sbjct: 381 TDPRVRDEVWPRAGRGVGCVEAPRGTLIHDYSTDESGCITRANLIVGTTHNLAPINMSVK 440
Query: 374 ---------GH----QLADVSAILGSLDI 389
G+ L V + + D
Sbjct: 441 KAARDLIQNGNVDEGLLNRVEMAVRAYDP 469
>gi|313673512|ref|YP_004051623.1| nad(p)-dependent nickel-iron dehydrogenase catalytic subunit
[Calditerrivibrio nitroreducens DSM 19672]
gi|312940268|gb|ADR19460.1| NAD(P)-dependent nickel-iron dehydrogenase catalytic subunit
[Calditerrivibrio nitroreducens DSM 19672]
Length = 470
Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats.
Identities = 65/439 (14%), Positives = 121/439 (27%), Gaps = 72/439 (16%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G R+ + LD V H+ +RG EKL E + F + R + P++
Sbjct: 12 IEGHARISIHLDDSGEVVDARFHV-TQYRGFEKLCEGRPFTEMPRLMARTCGICPVSHLI 70
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD---VGALTPPLW---- 131
A + A ++++G+++P G IR + + + SH L+ + +G P
Sbjct: 71 AASKACDEIMGVKVPRAGVNIRKIINYAQILQSHALSFFYLSSPDLLLGMDAPVEERNIA 130
Query: 132 ------------GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ + E+ R+H Y PGGV + + ++I
Sbjct: 131 GVLNRKKDFVENGIFLRKFGQMLIEKLGRKRIHPDYIVPGGVESPVEESIKDEIIENAKL 190
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSG------------A 227
D + + + G + G
Sbjct: 191 CIDKTLYTIDTFRSILPDFEEEIRYFSNIPTYHMAISKGGELEHYDGDILIIDPDGEIEL 250
Query: 228 AWDLRKSQPY------------ECY----SELDFDIPIGKHGDCYDRYLVRMMEMRESVK 271
+ + Y Y D +G +
Sbjct: 251 RFRPEEYHNYISERVEGFSYLKSPYLKTIGYPDGIYRVGPLSRLNVAEKCGTEVADRELS 310
Query: 272 IIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVG---- 327
I R+ R+ ++V + L++ + G
Sbjct: 311 IYREFAGRISNAA----FLNHYARLVEIIFCA--EKIIELLYDNSTFDNHTKANAGVNIE 364
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH--------LQAMEFLCKGHQLAD 379
E EAP+G + D + + LQA + KG + +
Sbjct: 365 EGVGVSEAPRGTLIHHYKVDRNGIVQWANLIIATGHNNLAMNKGILQAAKRFVKGDDVKE 424
Query: 380 -----VSAILGSLDIVFGE 393
V A++ D
Sbjct: 425 GFLNRVEAVIRCYDPCLSC 443
>gi|260576156|ref|ZP_05844149.1| nickel-dependent hydrogenase large subunit [Rhodobacter sp. SW2]
gi|259021636|gb|EEW24939.1| nickel-dependent hydrogenase large subunit [Rhodobacter sp. SW2]
Length = 469
Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats.
Identities = 77/464 (16%), Positives = 137/464 (29%), Gaps = 86/464 (18%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
GP + G L + L+LD V + L+RG E+++E + + A+ R+ +
Sbjct: 8 VGPFN-RVEGDLEIRLDLDQGRVAAAYVNAP-LYRGFERMLEGRDPMDALTLTPRICGIC 65
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV-------GA 125
++Q A A A+ +G+E +G + L + HL + M G
Sbjct: 66 SISQSAAAARALGSAMGLEPTPQGAAMAALIHMVENASDHLTHFNLFFMPDFTRPAYAGH 125
Query: 126 LTPPL--------------WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
G E R +LM +G H +PGGV + P
Sbjct: 126 AWHAQAVARFTAMQGSAQRAGIEARAELMHILGLMAGKWPHTLAIQPGGVTRAPGPRDKV 185
Query: 172 DIGCWCDSFPSALN--------DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIR 223
I F L + + + + L A G +G M R
Sbjct: 186 RIAATLRGFRRYLETVVFGGPLEAFAGMQTVAELMAWDRGDAGLFLRIAGDLGLAG-MGR 244
Query: 224 GSGAA------------WD----------LRKSQPYECYSELDFDIPIGK---------H 252
G+G WD +R+ + +G+
Sbjct: 245 GAGRYMSFGGHGFAAGLWDGGMQALDLGGIREDLSHSWMLGEGLHPSVGQTLPDEDMAEP 304
Query: 253 GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA------DMKR 306
G + + E+ + RQ ++ + ++ M+
Sbjct: 305 GYSWCKAPRLAGRTVETGALARQVIDGHPLARDLARDGGVLARVTGRLLELARLPGMMEA 364
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
++ + G VG VEA +G G +L + +I AP +
Sbjct: 365 VAAAIDTGAQFLAAGKLPQVGTGVGLVEAARGALGHWLRI-EKGRTAGYQIIAPTTWNFS 423
Query: 367 ---------AMEFLCKGHQLAD-------VSAILGSLDIVFGEV 394
+E G ++ + V I+ S D
Sbjct: 424 PRDAAGVPGPVEAALVGAEVREGETSPLSVQHIVRSFDPCMVCT 467
>gi|309791456|ref|ZP_07685961.1| nickel-dependent hydrogenase large subunit [Oscillochloris
trichoides DG6]
gi|308226492|gb|EFO80215.1| nickel-dependent hydrogenase large subunit [Oscillochloris
trichoides DG6]
Length = 473
Score = 177 bits (448), Expect = 3e-42, Method: Composition-based stats.
Identities = 65/441 (14%), Positives = 120/441 (27%), Gaps = 74/441 (16%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD V H+ RG E+ E + F + R+ + P++
Sbjct: 13 IEGHAKISIYLDDMGEVSDARFHV-TEFRGFERFCEGRPFWEMPAITARICGICPVSHLL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A A A + +L ++IP +R + + + SH L+ +
Sbjct: 72 ASAKAGDGILAVDIPPAADKLRRMMNLAQIVQSHALSFFHLSGPDFILGFDSDPATRNVF 131
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ E G ++H A+ PGGV +P + + I
Sbjct: 132 GLIAANPELARSGIRLRQFGQEVIEHLGGRKIHPAWAVPGGVRSGLPDQARQAIREKLPE 191
Query: 180 FPSALNDISDLL-TGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSG------------ 226
S + T ++ + GT + G G
Sbjct: 192 AFSITRAAIGHMKTFLDTYRDEAASFGTFESLFMGLVADDGTWEHYGGALRVVDATGAIL 251
Query: 227 -----------------AAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRES 269
W K Y+ D +G + +
Sbjct: 252 EDHVEARRYAEIIGEAVEPWSYLKFPYYQPRGYPDGMYRVGPLARINVCRSFGTPQADDE 311
Query: 270 VKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVG-- 327
+ +RQ G ++V A + L+ L + G
Sbjct: 312 LIELRQR----GGATIKSSFFYHYARLVEILGA--LERIARLLDDPDLASRRLRADAGVN 365
Query: 328 --EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFL--------CKGHQL 377
E EAP+G + D + + + AM +G+ +
Sbjct: 366 RLESVGISEAPRGSLIHHYKVDEHGLITQVNLIIATGQNNLAMNRTVAQIARRFVRGNTI 425
Query: 378 AD-----VSAILGSLDIVFGE 393
+ V A + + D
Sbjct: 426 PEGMLNRVEAGIRAFDPCLSC 446
>gi|15606172|ref|NP_213549.1| hydrogenase large subunit [Aquifex aeolicus VF5]
gi|2983358|gb|AAC06945.1| hydrogenase large subunit [Aquifex aeolicus VF5]
Length = 416
Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats.
Identities = 65/422 (15%), Positives = 131/422 (31%), Gaps = 64/422 (15%)
Query: 25 RLILE-LDGE----------IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAP 73
+L+L ++GE +++ RG EK++ + F+ A+ R+ +
Sbjct: 5 KLVLTRVEGEASLNLVWERGVIKDAKIS-FYSTRGIEKVLRERPFMDALVINPRICGICG 63
Query: 74 MNQEHAYALAVEKLLGI-EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA------- 125
A A+E +GI EIP + ++ R++ + +H+ M
Sbjct: 64 HAHLIATVRAIENAIGIKEIPEKAKITRLVTQITEMVQNHVKWFYLFVMPDFLKFKESLS 123
Query: 126 ------LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
+ +++ G H++Y PGG+ + V
Sbjct: 124 QFEPFKGERWKRAVQFSSQIVKIIALFGGQWPHSSYAVPGGITSNFSEREVLKALNLVKE 183
Query: 180 ----FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQ 235
F +++ +L N + ++IG A+ SG + +K +
Sbjct: 184 GKTFFEKNVSEDLELFL-NLCEEFNLLSIGK-----AYNRFLSGGGLAYCFNP-SYKKGK 236
Query: 236 PYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPK 295
C + + + + E+ + R+ +++ K+
Sbjct: 237 GKVCKFNVRYVQELEAADYSKANPVRYKGLPYETGPLARELISKNPLVLKLYKNYGDSYA 296
Query: 296 IVPPKR-ADMKRSMESLIHHFKLYTEGYHVP----------VGEVYAAVEAPKGEFGVYL 344
+ R A++K +E L K P GE + VEA +G +
Sbjct: 297 VRVAARLAEIKDLLEILEKLLKELMNHLEEPSCLWEDRSDESGEGFGVVEAARGTLIHRV 356
Query: 345 ISDGGNKPYRCKIRAPGYAHLQA--------MEFLCKGHQLAD----VSAILGSLDIVFG 392
+ K K+ P +L E G D +L S D+
Sbjct: 357 VI-EKGKIKDYKVITPSQWNLGPRCKKYLGVAEKAIVGL---DSELKAQMVLRSFDLCSV 412
Query: 393 EV 394
Sbjct: 413 CT 414
>gi|91780574|ref|YP_555781.1| putative nickel-dependent hydrogenase, large subunit [Burkholderia
xenovorans LB400]
gi|91693234|gb|ABE36431.1| NAD(P)-dependent nickel-iron dehydrogenase catalytic subunit
[Burkholderia xenovorans LB400]
Length = 504
Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats.
Identities = 60/438 (13%), Positives = 129/438 (29%), Gaps = 65/438 (14%)
Query: 20 AHGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD + V++V HI + RG EK IE + + + RL + P++ +
Sbjct: 25 VEGHGKVTILLDEQQRVQQVRLHI-VEFRGFEKFIEGRPYWEVPVMVQRLCGICPVSHQL 83
Query: 79 AYALAVEKLLGIE-IPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV-------------- 123
A + A+++++G + + IR L + SH L+ A
Sbjct: 84 AASKAMDRVVGARPVTRSAEKIRRLMHYGQVMQSHALHFFYLASPDLLFGFDSEVDLRNI 143
Query: 124 -----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
G R+ SG R+H PGG+++ + + + D
Sbjct: 144 VGVAQAYPDIAKQGILLRKFGQELIRATSGKRIHGTGSIPGGMNRYVSQADRDMLYRDVD 203
Query: 179 SFPSALNDISDLLTG-NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA---------- 227
D D+ + + G+ + G M G
Sbjct: 204 QMTGWAADAVDIAKQLHAQNPALYDSFGSFRSNMLSLVRADGAMDLYDGVLRARDADGGI 263
Query: 228 --------AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKII------ 273
+ + ++ + F D + + ++ I
Sbjct: 264 IFDGASDQDYMSLIEEETRPWTYMKFPHLRSLGRDTGWYRVGPLARVQNCDFIPSPLAEA 323
Query: 274 --RQCVNRLLGKNKVGPVSASDPKIVP--PKRADMKRSMESLIHHFKLYTEGYHVPVGEV 329
++ V+ G ++ +++ +K ++ G
Sbjct: 324 QRKEFVDWGKGSPVHATLAYHWARMIEVLHAVEVIKDLLDDPDILQGELMASGERRAG-G 382
Query: 330 YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK--------GHQLAD-- 379
+EAP+G + + C + + QAM + G +L +
Sbjct: 383 VGIIEAPRGTLIHDYRVNADDLVTHCNLIVSTTHNNQAMNEAVRSVAREYLDGQRLTEGL 442
Query: 380 ---VSAILGSLDIVFGEV 394
+ + + D
Sbjct: 443 LNRIEIAIRAFDPCLSCA 460
>gi|296446748|ref|ZP_06888687.1| nickel-dependent hydrogenase large subunit [Methylosinus
trichosporium OB3b]
gi|296255751|gb|EFH02839.1| nickel-dependent hydrogenase large subunit [Methylosinus
trichosporium OB3b]
Length = 483
Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats.
Identities = 70/482 (14%), Positives = 115/482 (23%), Gaps = 102/482 (21%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
I GP + G L L L++D +V L+RG E+L+ + A+ R+
Sbjct: 4 IVVGPFN-RVEGDLELTLDIDDGVVREARVAA-SLYRGFEQLLLGRPAEDALVIAPRVCG 61
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP- 129
+ ++Q A A + G + L I HL + M A
Sbjct: 62 ICSVSQSLAAAAVLRGAQNAAPARNGLIATNLAHAAENIADHLTHFYVFFMPDFARAAYA 121
Query: 130 --------------------LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL 169
R +L+ +G H+ FRPGGV + +
Sbjct: 122 ARSWHETAQTRFRAVSGAALREALPARARLLETMGLIAGKWPHSLAFRPGGVTRALALGD 181
Query: 170 VEDIGCWCDSFPSALN-----------------DISDLLTGNRIFKQRNVNIGTVKLEDA 212
+ F + D D + +
Sbjct: 182 EMRLVALLADFRGFIERTLFAAPIEAVIELASGDALDRFAHGAGAAGDFAAFVRIARDLR 241
Query: 213 WGWGFSGVMIRGSGAAWDLRKSQPY----------------------------------E 238
G + S A+ + +
Sbjct: 242 LEQIGRGPGLLMSAGAYLGSDGHHFPAGLLDAATGALRAPPLHAIEEDVSHSFMRDTAGD 301
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL---GKNKVGPVSASDPK 295
+ + E + RQ V S +
Sbjct: 302 PARAETVPDIHRPGAYSFAKAPRLEGRAVEVGALARQAVAGHPLIRDLLAPQGASNVFAR 361
Query: 296 IVPPKRA------DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGG 349
IV M L T + G VEA +G G + S
Sbjct: 362 IVARLLEIALLTQAMDGWTRDLRRSEPFCTPDTPLRDGAFAGFVEAARGALGHWA-SYAN 420
Query: 350 NKPYRCKIRAPGYAHLQ---------AMEFLCKG--------HQLADVSAILGSLDIVFG 392
+ R +I AP + +EF +G +A + I+ S D
Sbjct: 421 GEIARYQIIAPTTWNFSPRDASGRPGPLEFALQGLDVGAEGASSVA-LQHIVRSFDPCMV 479
Query: 393 EV 394
Sbjct: 480 CT 481
>gi|71909570|ref|YP_287157.1| nickel-dependent hydrogenase, large subunit [Dechloromonas
aromatica RCB]
gi|71849191|gb|AAZ48687.1| Nickel-dependent hydrogenase, large subunit [Dechloromonas
aromatica RCB]
Length = 472
Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats.
Identities = 69/469 (14%), Positives = 124/469 (26%), Gaps = 91/469 (19%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
GP + G L + L+++ ++ + L RG E+++ + L A+ R+ +
Sbjct: 6 VGPFN-RVEGDLEISLDVENGRIQSAQVNSP-LFRGFEQIMVGRAPLDALAIVPRICGIC 63
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL-- 130
+ Q A A A+ +GI G L R L + HL + M A
Sbjct: 64 SVAQSAAAASALADAMGIAPTPNGLLARHLIQSTENLADHLTHFYLFFMPDFARPAYAGR 123
Query: 131 -------------------WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
R + +G H +PGG + I
Sbjct: 124 HWHGAVAQRFAAVKGDATAEVLSARASFLKLMGFLAGRWPHTLAIQPGGSTRAITAGERI 183
Query: 172 DIGCWCDSF------------------------------------PSALNDISDL-LTGN 194
+ F P+ L+ +DL L
Sbjct: 184 RLLALLREFRSFLEKRLFGDSLATVSQLASKDQLLAWAAGRAGDFPAFLDAATDLGLDRM 243
Query: 195 RIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKS-------QPYECYSELDFDI 247
++ G L A W G A D + QP
Sbjct: 244 GSAYDAFLSYGAYDLFPAGTW-QGGQAAAFDPVAIDEDTTSAWLAAGQPRHPAQGETVVD 302
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL------GKNKVGPVSASDPKIVPPKR 301
+ + + E + RQ + ++ ++ +++
Sbjct: 303 AGKPAAYTWCKAPRYASQPYEVGALARQVIAGHPLALDLVQRDGASVMARVVARLLELAL 362
Query: 302 A--DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
M+ + +L G VEA +G G +L + R +I A
Sbjct: 363 VLPAMEGWVLALQPGEAFCAHGDMPDDATGTGLVEAARGSLGHWLSIK-RGRIERYQIIA 421
Query: 360 PGYAHLQ---------AMEFLCKGHQLAD-----VSAILGSLDIVFGEV 394
P + +E G + V ++ S D
Sbjct: 422 PTTWNFSPRDGNALPGPLEQALVGLPAGEGAPPTVQHVVRSFDPCMVCT 470
>gi|320160376|ref|YP_004173600.1| bidirectional hydrogenase H subunit [Anaerolinea thermophila UNI-1]
gi|319994229|dbj|BAJ63000.1| bidirectional hydrogenase H subunit [Anaerolinea thermophila UNI-1]
Length = 474
Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats.
Identities = 71/439 (16%), Positives = 134/439 (30%), Gaps = 71/439 (16%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLH----RGTEKLIETKTFLQAVPYFDRLDYVAPM 74
G ++ + LD V R +H RG EK E + + R+ + P+
Sbjct: 14 IEGHAKVTIHLDEAGKVRRA-----YMHVNEFRGFEKFCEGRMVFEMPYITPRICGICPV 68
Query: 75 NQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV----------- 123
+ A + A + +LG P L+R L + SH ++ A
Sbjct: 69 SHHLAASKAADIVLGCPPPRPASLLRELMHMGQIVQSHGMHFFELAGPDLLLGFDADPAI 128
Query: 124 --------GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGC 175
+ + R+ G R+H + PGGV++ + P ++I
Sbjct: 129 RNVIGVAQMNTELAVRAVQLRKWGQSIIAILGGKRVHPNFSVPGGVNKALSPAERDEILA 188
Query: 176 WCDS----FPSALNDISDLLTGNRIFKQRNV-----NIGTVKLED--------AWGWGFS 218
D + + I D N ++ +G + E+ G
Sbjct: 189 GLDESIATIQTGIQIIRDWAEANMEDIRKFAVFPTGYLGLITPENGLELYDGEIRLIGQD 248
Query: 219 GV-MIRGSGAAWDLRKSQPYECYSELDFDIP--IGKHGDCYDRYLVRMMEMRESV--KII 273
GV + R S + ++ E +S L F +G Y + + + E + +
Sbjct: 249 GVQLERFSAQHYLDYIAEHVESWSYLKFPYYKKLGWPNGVYRVGPLGRLNIAEKIDTPLA 308
Query: 274 RQCVNRLLGKNKVGPV----SASDPKIVPP--KRADMKRSMESLIHHFKLYTEGYHVPVG 327
Q R N PV +++ ++ ++ G
Sbjct: 309 NQEFKRFKALNPGKPVENTLYYHYARMIECLFAAERVRFLLDDPDILSTDILNTRKEVKG 368
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLC-------------KG 374
E +EAP+G + +D + + + + AM +G
Sbjct: 369 EGVGVIEAPRGTLLHHYWTDQNGQIKKVNLIVSTGHNNWAMSEAVDQVAKTYITGPVTEG 428
Query: 375 HQLADVSAILGSLDIVFGE 393
L V A + + D
Sbjct: 429 -MLNRVEAAIRAYDPCLSC 446
>gi|284050508|ref|ZP_06380718.1| nickel-dependent hydrogenase large subunit [Arthrospira platensis
str. Paraca]
Length = 476
Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats.
Identities = 61/442 (13%), Positives = 118/442 (26%), Gaps = 74/442 (16%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD VE H+ + RG EK E + + R+ + P++
Sbjct: 13 IEGHAKISIYLDDAGEVEDARFHV-VEFRGFEKFCEGRPMFEMAGITARICGICPVSHLL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A A +K+L +++P G+ +R + + SH L+ +
Sbjct: 72 AAAKTGDKILAVQVPPAGEKLRRMMNLAQLTQSHALSFFHLSSPDFLLGWDSDPAKRNVF 131
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ E ++HAA+ PGGV + E +E I
Sbjct: 132 GLIAADPDLARAGIRLRQFGQTVIELLGARKIHAAWAVPGGVRSPLSQEGLEWIKDRLPE 191
Query: 180 FPSALND----------------------ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF 217
L G + G
Sbjct: 192 ARQTTELALNLLKRLLDSDLASEVDIFGKFPSLFMGLVAPNGNWEHYGGHLRFIDSDGNI 251
Query: 218 SGVMIRGSGA---------AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRE 268
+ W K Y+ D +G + +
Sbjct: 252 VADGLSEDNYQDYLGEAVENWSYLKFPYYKPLGYPDGIYRVGPLARLNVCDQIGTPDADR 311
Query: 269 SVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVG- 327
++ R +R + ++V ++E+L+ + + G
Sbjct: 312 ELREFR---DRAGSRVATSSFFYHYARLVEIMACI--EAIEALVEDPDITSSRVRADAGI 366
Query: 328 ---EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFL--------CKGHQ 376
E EAP+G + + + + + AM G++
Sbjct: 367 NNLEGVGVSEAPRGTLFHHYKVNENGLIEKVNLIIATGQNNLAMNKTVTQIAKHYIHGNE 426
Query: 377 LAD-----VSAILGSLDIVFGE 393
+ + V A + D
Sbjct: 427 IPEGLLNRVEAGIRCFDPCLSC 448
>gi|325958128|ref|YP_004289594.1| Hydrogen dehydrogenase [Methanobacterium sp. AL-21]
gi|325329560|gb|ADZ08622.1| Hydrogen dehydrogenase [Methanobacterium sp. AL-21]
Length = 470
Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats.
Identities = 65/435 (14%), Positives = 117/435 (26%), Gaps = 62/435 (14%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD VE H+ + RG EK ++ + + R+ + +
Sbjct: 12 IEGHAKITVHLDDAGNVEETRLHV-MEFRGFEKFLQGRPVEEVPRIVPRICGICDVQHHL 70
Query: 79 AYALAVEKLLGI---EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG----------- 124
A A A ++ G EI +R L + + SH L+ A
Sbjct: 71 AAAKASDQCYGFKDDEILPAAYKMRELMNWGSFMHSHALHFYFLAAPDFIAGKDRKTRNV 130
Query: 125 ------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
A L E R+ + + G +H PGG+ ++ E D+
Sbjct: 131 FQIIKDAPDVALQAIELRKNALDIVKATGGRSIHPTSSTPGGISTELDAETQADLLKKAQ 190
Query: 179 SFPSALNDISDL----LTGNRIFKQ-----RNVNIGTVKLEDAWGWGFSGVMIRGSGA-- 227
DL N + + G V + M G
Sbjct: 191 RNVELAQATFDLAKPIFEENLELVETLGAVETYHTGLVNKGVWDVYNGDVRMKDKEGKIY 250
Query: 228 ---------AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESV-KIIRQCV 277
+ K +PY G L R+ + I +
Sbjct: 251 AEFGSENYLDYMAEKVKPYSWLKFPYIKDLGYPEGIYRVAPLSRLNVADKMPSPIAQDAF 310
Query: 278 NRLLGKNK--VGPVSASDPKIVP--PKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAV 333
P+ +++ ++E + K GE V
Sbjct: 311 KEFKETFGYAQQPLLFHWARLIELIAAAEMAADALEGDLSGEKFPGP-IERQAGEGVGIV 369
Query: 334 EAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLC---------KGHQLAD----- 379
EA +G + +D + I + AME G ++ D
Sbjct: 370 EAARGTLTHHYQTDEDGLVTKANIVVATIQNNPAMEMGIQKVAKDYIKPGVEVDDKIFNL 429
Query: 380 VSAILGSLDIVFGEV 394
+ ++ + D
Sbjct: 430 MEMVIRAYDPCLSCA 444
>gi|159027101|emb|CAO89286.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 474
Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats.
Identities = 66/441 (14%), Positives = 116/441 (26%), Gaps = 74/441 (16%)
Query: 20 AHGVLRLILELD-GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD G V+ V H+ + +RG EK E + + R+ + P++
Sbjct: 13 IEGHAKISIFLDDGGEVDDVRFHV-VEYRGFEKFCEGRPMWEMAGITARICGICPVSHLL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A +K+L ++IP G+ +R L + SH L+ +
Sbjct: 72 CAAKTGDKILAVQIPPAGEKLRRLMNLGQLTQSHALSFFHLSSPDFLLGWESDPAKRNVF 131
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ E ++H A+ PGGV + E + I
Sbjct: 132 GLIAADPDLARAGIRLRQFGQKVIELLGAKKIHPAWSVPGGVRSPLSEEGRQWIKERLPE 191
Query: 180 FPSALNDISD---------------------LLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
+ L + L G + + G
Sbjct: 192 SKATLYTALNLFKGLLDNLTTEIAAFGNFPSLFMGLVGKRDEWEHYGGHIRFTDSQGNIV 251
Query: 219 GVMIRGSGA---------AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRES 269
+ W K Y+ + +G R V E
Sbjct: 252 ADNLSEDNYRDYIGESVEKWSYLKFPYYKPLGYPNGIYRVGP----LARLNVCSHFGTEG 307
Query: 270 VKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVG-- 327
I + V S + +E LI + ++ G
Sbjct: 308 ADI--ELREYRHRVGGVATSSFYYHYARLVEILACLEQIERLIDDPDIVSQRCRAEAGIN 365
Query: 328 --EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK--------GHQL 377
+ EAP+G D + + AM K G ++
Sbjct: 366 NLQGVGVSEAPRGTLFHDYKVDENGLIETVNLIIATGNNNLAMNQTVKQIAQHYIHGGEI 425
Query: 378 AD-----VSAILGSLDIVFGE 393
+ V A + D
Sbjct: 426 PEAMLNRVEAGIRCYDPCLSC 446
>gi|57234566|ref|YP_181357.1| hydrogenase, group 3, VhuA subunit, putative [Dehalococcoides
ethenogenes 195]
gi|57225014|gb|AAW40071.1| hydrogenase, group 3, VhuA subunit, putative [Dehalococcoides
ethenogenes 195]
Length = 479
Score = 176 bits (447), Expect = 4e-42, Method: Composition-based stats.
Identities = 58/444 (13%), Positives = 113/444 (25%), Gaps = 74/444 (16%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++++ LD V HI L RG EK + + R+ V P++
Sbjct: 12 IEGAAKVVINLDDNGNVSDARMHIIEL-RGFEKFCIGRPVEEMPRITPRICGVCPLSHHL 70
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV--------------- 123
A A + + G+ P G+ +R L + + H+L+ A
Sbjct: 71 CSAKACDNVFGVTPPSAGRKLRELANAAAYMEEHILHFFFLAGADLVMGPGENYSMRNVF 130
Query: 124 ----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
R + G +H GG + + E +
Sbjct: 131 GIAQKMPELGQKVIRSRHLASKLLDYLLGKDIHPVAAVAGGFSKPLTETEREKMMEMAKE 190
Query: 180 FPSALNDISDLLTGNRI--FKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPY 237
N ++ IG +K +G + + G LR P
Sbjct: 191 LLEFAKFSIAYAKENLFGKYEDLIKEIGVIKTGFLGTVDKNGALNQYDGH---LRLMHPD 247
Query: 238 ECYSELDFDIPIGKHG-----DCYDRYL-------VRMMEMRESVKIIRQCVNRL----- 280
++E D + Y ++ M S + + R+
Sbjct: 248 GKFTEFDPKDYLDHITERVEDWSYAKFPYAKELGEFNMDLDNPSGILRVNTLARINVCER 307
Query: 281 ----------------LGKNKVGPVSASDPKIVPPKR--ADMKRSMESLIHHFKLYTEGY 322
G+ + + +++ +
Sbjct: 308 IATPLAQKELEEFRSKFGRPAQQSLLFNWARLIELLYNAERAVELLSDPEITSTNTRVPV 367
Query: 323 HVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF--------LCKG 374
G +EAP+G +D + + A+ L KG
Sbjct: 368 TPKAGRGVGCIEAPRGTLIHDYTTDENGLVTDANLLVATVMNNAAINMSVKQAAQTLIKG 427
Query: 375 -----HQLADVSAILGSLDIVFGE 393
L ++ ++ + D
Sbjct: 428 GKYDETILDEIEMVIRAYDPCLSC 451
>gi|119897706|ref|YP_932919.1| hydrogen dehydrogenase subunit beta [Azoarcus sp. BH72]
gi|119670119|emb|CAL94032.1| probable hydrogen dehydrogenase, beta subunit [Azoarcus sp. BH72]
Length = 487
Score = 176 bits (447), Expect = 4e-42, Method: Composition-based stats.
Identities = 60/442 (13%), Positives = 120/442 (27%), Gaps = 73/442 (16%)
Query: 20 AHGVLRLILELD-GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ L LD V HI + RG E ++ + + + RL + P++
Sbjct: 25 VEGHGKVTLLLDADGEVCEARLHI-VEFRGFEVFVQGRPYWEVPVIVQRLCGICPVSHHL 83
Query: 79 AYALAVEKLLGIE-IPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV-------------- 123
A A++ ++G +P +R L + SH L+ A
Sbjct: 84 AACKALDHVVGAAPVPASADRLRRLMHYGQILQSHALHFFHLASPDLLFGFDAEPARRNI 143
Query: 124 -----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
G R+ +G R+H PGG+++ + P + D
Sbjct: 144 LAVAAAYPEIARQGVMLRKFGQEVIRATAGKRIHGTGAVPGGMNRHLAPADHALLLAGID 203
Query: 179 SFPSALNDISDLLTG-NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSG----------- 226
+ +L+ + + GTV G G + G
Sbjct: 204 EVLTWCRGAVELVRRLHDADAAFYDSFGTVASGFMSLVGEGGGLEFYDGTLRFRDADGQI 263
Query: 227 ------------------AAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRE 268
W K +G + + E
Sbjct: 264 VRDGVADRDYHRVLREAVKPWSYMKFPYLAERGPEQGWYKVGPLARVQNCDFIPTPLA-E 322
Query: 269 SVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYH---VP 325
S + R ++ G+ P++ +++ A + L+ L
Sbjct: 323 SER--RAFLDYGGGRPLHAPLAYHWARMIEMLHAA--ELIRDLLEDPALLAGPLTAAGPR 378
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK---GHQLAD--- 379
E +EAP+G + + C + + +AM + ++
Sbjct: 379 ASEGVGVIEAPRGTLIHHYRVGEDDLVTMCNLIVSTTHNNEAMNAAVRAVARQTVSKQTL 438
Query: 380 -------VSAILGSLDIVFGEV 394
+ + + D
Sbjct: 439 TEAALNSIEVAIRAFDPCLSCA 460
>gi|297619111|ref|YP_003707216.1| nickel-dependent hydrogenase large subunit [Methanococcus voltae
A3]
gi|297378088|gb|ADI36243.1| nickel-dependent hydrogenase large subunit [Methanococcus voltae
A3]
Length = 473
Score = 176 bits (447), Expect = 4e-42, Method: Composition-based stats.
Identities = 64/438 (14%), Positives = 132/438 (30%), Gaps = 64/438 (14%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ L D +++V+ H+ + RG EK +E + A + R+ + ++
Sbjct: 12 VEGHGKVTLSFDDSGKLDKVNFHVVEV-RGFEKFLEGRYIEDAPVFTPRICGICQVSHNL 70
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV--------------- 123
A A AV+ + G++IP ++R L + + SH L+ A
Sbjct: 71 ASAKAVDNIFGVKIPKTADMLRNLMQQASNVHSHALHFGMLAAPDLMFPTTDDALKRNLL 130
Query: 124 ----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
+ R+ ++ G +H GG + + E +++ D+
Sbjct: 131 GIAAENMDMVKDSIAMRKVGQTVIQKVGGRAIHPVTAIVGGQSKALSEEERDELLTLSDN 190
Query: 180 FPSALNDISDL---LTGNRIFKQRNV-------NIGTVKLEDAWGWGFSGVMIRGSG--- 226
++ + N K ++G V + + ++ G
Sbjct: 191 LVETAERTLNVGKQMMENLKEKDLMDLGYFESYHMGLVNKGAQDIYEGNIRVVNSEGKTE 250
Query: 227 AAWDLRKSQPY-----ECYSELDFDIPIG---------KHGDCYDRYLVRMMEMRESVKI 272
+D + Y YS L F + R V +
Sbjct: 251 YEFDPSEYMNYISEGVRPYSYLKFPYLTEKGDGEGKGAYRVNTLSRLNVCDKMPTPLAQK 310
Query: 273 IRQCVNRLLGKNKVGPVSASDPKIVPP--KRADMKRSMESLIHHFKLYTEGYHVPVGEVY 330
+ + GK P+ +++ +++ +E + VGE
Sbjct: 311 YYEKFVQTYGKPAHQPMLFHYARLIELLSSSELIRKFLEDDKIVDTDVRAEANDIVGEGV 370
Query: 331 AAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM--------------EFLCKGHQ 376
VEAP+G + +D + + AM K H
Sbjct: 371 GCVEAPRGTLIHHFKTDDRGIINDANLVVATVQNNPAMDIGVQKVAQKYIKTPEDAKPHI 430
Query: 377 LADVSAILGSLDIVFGEV 394
L + ++ + D
Sbjct: 431 LNYMEMVIRAYDPCLSCA 448
>gi|89091972|ref|ZP_01164927.1| hypothetical protein MED92_07391 [Oceanospirillum sp. MED92]
gi|89083707|gb|EAR62924.1| hypothetical protein MED92_07391 [Oceanospirillum sp. MED92]
Length = 428
Score = 176 bits (447), Expect = 5e-42, Method: Composition-based stats.
Identities = 60/404 (14%), Positives = 122/404 (30%), Gaps = 34/404 (8%)
Query: 21 HGVLRLILELDGEIVERV-DPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L L + E I R EK +E + + + R+ + P+ + +
Sbjct: 19 EGALHLKIT---EGALDALQFKIYEPPRFFEKFLEGRHYTEVPDIVARICGICPVAYQVS 75
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA------------LT 127
A+E L + + +R L I SH L++ A+
Sbjct: 76 AVNALESLFQAPLTPWIKQMRRLLYCGEWIQSHSLHIHLLALPDYFSEESVLGLAAKEPE 135
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
GF +E G +H + GG H+ E +++ + +
Sbjct: 136 VVKRGFAIQEAGNRLIRFLGGRSVHPVGLKVGGFHRAPSAEEAKELLEFLQERLPEAVAL 195
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
++ + G ++ + + +V L +G++ G + + + S+
Sbjct: 196 AEWVAGIKLPEDEQEFV-SVALSTEQFAIEAGLLRNSQGLQITEDQYEAHFTESQSPHST 254
Query: 248 PIGKHGDCYDR---YLVRMMEMRESVKII-RQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+ D D L R+ + + + +NRL + S
Sbjct: 255 ALWSLMDGQDYLVGPLARLNLNHDCLPAFLKTLLNRLGDPFPSRNMFHSMLARAIEICVV 314
Query: 304 MKRSMESLI-HHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ ++ L + + + V G + EAP+G D KI P
Sbjct: 315 LHEAISILQSYQPDTPSAEFSVRAGAGFGWSEAPRGLLWHRYTVDEQGIITAAKIVPPTS 374
Query: 363 AHLQAMEFLCK------GHQLADVSA------ILGSLDIVFGEV 394
+ +E + G AD ++ + D
Sbjct: 375 QNQARIERDLEKSLTAFGLDKADELLRLHSEKVVRNYDPCISCA 418
>gi|262275763|ref|ZP_06053572.1| nickel-dependent hydrogenase large subunit [Grimontia hollisae CIP
101886]
gi|262219571|gb|EEY70887.1| nickel-dependent hydrogenase large subunit [Grimontia hollisae CIP
101886]
Length = 502
Score = 176 bits (447), Expect = 5e-42, Method: Composition-based stats.
Identities = 60/480 (12%), Positives = 120/480 (25%), Gaps = 109/480 (22%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L L+++ +V IG+++RG E+++ +T A R+ + +A
Sbjct: 13 VEGDLEFELDVEDGVVVDARC-IGVMYRGFEQIMIGRTPRDAAVITPRVCGICGTAHLYA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL--------- 130
LA+E++ GI P IR L I + + + T
Sbjct: 72 ATLALEQVWGIAPPPNATRIRNLCLLTESIQNDIRQSFLMFLVDFCHTAYQNHPLYNDII 131
Query: 131 ------------WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
+ + G H++Y PGGV + +
Sbjct: 132 DAFAPFKGKYHLDALAQSRDAVGIVALFGGQWPHSSYMLPGGVVGKPSIRKIIESRDIIA 191
Query: 179 SFPSALNDIS--------------------------------DLLTGNRIFK-------- 198
+ L T
Sbjct: 192 KLARWYENAVIGDSLDNWLSLSHADAFFDGWENNGQKANSALGLFTRFSRSIGLHQIGFG 251
Query: 199 --QRNVNIGTVKLEDAWGWGFS----------GVMIRGSGAAWDLRKSQPYECYSELDFD 246
G + G + + + P +
Sbjct: 252 AGDMLSYGGVGYAKHHVMPGVYHSERGEVTPLDQSLIEEHVRYSWFRQYPGGRHPHKGET 311
Query: 247 IPIGKH---GDCYDRYLVRMMEMRESVKIIRQCVNRLL--------GKNKVGPVSASDPK 295
IP +H + + ++ ++ + ++ S +
Sbjct: 312 IPDYQHESDRYTWAKAPRYGGKVMQTGPMAELIISGDPLVSALHRKEGPSTWLRQFSRLR 371
Query: 296 IVPPKRADMKRSMESLIHHFKLYTEGYHVP------VGEVYAAVEAPKGEFGVYLISDGG 349
+ MK ++++L + L E + P G+ V+A +G G ++
Sbjct: 372 RIGFSLQQMKDTVDALADN--LGGEFFLPPRPENEIDGKGVGMVQAARGGLGHWVNIK-D 428
Query: 350 NKPYRCKIRAPGYAHLQA---------MEFLCKGHQLAD------VSAILGSLDIVFGEV 394
R +I P + E G + D V ++ S D
Sbjct: 429 GVVDRYQIITPTAWNASPKDENGTHGHWEQSVIGLSVDDLDNPLMVGHVIRSHDPCLVCT 488
>gi|315229835|ref|YP_004070271.1| sulfhydrogenase II subunit a [Thermococcus barophilus MP]
gi|315182863|gb|ADT83048.1| sulfhydrogenase II subunit a [Thermococcus barophilus MP]
Length = 416
Score = 176 bits (447), Expect = 5e-42, Method: Composition-based stats.
Identities = 60/401 (14%), Positives = 107/401 (26%), Gaps = 30/401 (7%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G + + ++ V+ I R E L + + R+ + + A
Sbjct: 12 VEGNGKAEVIIENGEVKEARVKIVEGPRFFELLTLGRYYWDVPDLEARICAICYLAHSFA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP----------- 128
L +E G+++P QL+R L + SH L++ P
Sbjct: 72 SVLGIENAFGVKVPEEIQLLRELGLIGEILESHSLHLYLLVAPDLFGYPDAIRMASKHGE 131
Query: 129 -PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
G + E G +H +PGG + + +E I CD+
Sbjct: 132 IVREGLALKAFGNYIREVIGGREIHGINVKPGGFGRYPTEDELEKIDKSCDALLRFAKRA 191
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
++ +F + R KS PY + +
Sbjct: 192 VNIFATQEVFGAVPEYHVATDGYLYGEKLIASDGERFDYFEHIEEKSLPYSFAKQSHYKG 251
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
+ G + + ++ Q +L A ++V +
Sbjct: 252 SVFMTGALSRLMVKSDRLTPIAKELFEQHKEKLSRGYVSLNNLAQAIELVYSLERAKEIV 311
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH--- 364
L H K GE VEAP+G + D I P +
Sbjct: 312 STLLDHGIKGENVPIEPKEGEGIGYVEAPRGVLIHHYRIDENGNITYSNIITPTALNHAL 371
Query: 365 --LQAMEFL----------CKGHQLADVSAILGSLDIVFGE 393
L E H+L + + + D
Sbjct: 372 MELSLYEEARKQYGTVDENFLKHKLEE---TVRAFDPCISC 409
>gi|330940384|gb|EGH43488.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas syringae pv. pisi str. 1704B]
Length = 377
Score = 176 bits (447), Expect = 5e-42, Method: Composition-based stats.
Identities = 69/170 (40%), Positives = 103/170 (60%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +PY D
Sbjct: 208 DYMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMAERQSWHSFIPYTD 267
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R+DY+ + Y L+VEKL GI++P + +IR++ +E RI SHLL + T DVGA+
Sbjct: 268 RIDYLGGVMNNLPYVLSVEKLAGIKVPEKVDVIRIMMAEFFRITSHLLFLGTYIQDVGAM 327
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCW 176
TP + F +R+K E +G R+H A++R GGV D+P + + +
Sbjct: 328 TPVFFTFTDRQKAYTVIEAITGFRLHPAWYRIGGVAHDLPRGWEKLVKDF 377
>gi|150398829|ref|YP_001322596.1| nickel-dependent hydrogenase large subunit [Methanococcus vannielii
SB]
gi|150011532|gb|ABR53984.1| nickel-dependent hydrogenase large subunit [Methanococcus vannielii
SB]
Length = 471
Score = 176 bits (446), Expect = 6e-42, Method: Composition-based stats.
Identities = 67/438 (15%), Positives = 126/438 (28%), Gaps = 66/438 (15%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ L D +E+V+ H+ + RG EK +E + A + R+ + ++
Sbjct: 12 VEGHGKVTLSFDDSGKLEKVNFHVVEV-RGFEKFLEGRYIEDAPVFTPRICGICQVSHNL 70
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP---------- 128
A A AV+ + G++IP ++R L + + SH L+ A
Sbjct: 71 ASAKAVDNVFGVKIPKTANMLRNLMQQASNVHSHALHFGMLASPDLMFPMTDDALKRNVL 130
Query: 129 ---------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
R+ ++ G +H PGG + + + E++ ++
Sbjct: 131 GVASENIEVVKDAIAMRKIGQTIIQKVGGRAIHPVTAIPGGQSKPLTEKEREELLKMSEN 190
Query: 180 FPSALNDISDL---LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSG---------- 226
L L K IG + +G G
Sbjct: 191 LVETAEKTLTLGKQLVEGLKEKDLFD-IGYFESYHMGLV-NNGAQDIYEGNIRVVNPEGK 248
Query: 227 --AAWDLRKSQPYE-----CYSELDFDIPIG-------KHGDCYDRYLVRMMEMRESVKI 272
+D + Y YS L F + R V +
Sbjct: 249 IEYEYDPSEYAKYMSEGVRPYSYLKFPYLTEKGPVDGVYRVNTLSRLNVCDKMPTPIAQK 308
Query: 273 IRQCVNRLLGKNKVGPVSASDPKIVPP--KRADMKRSMESLIHHFKLYTEGYHVPVGEVY 330
+ + GK P+ +++ +++ +E VGE
Sbjct: 309 YYEEFVKTYGKPAHHPMLFHYARLIELVSSAELVRKFLEDDTIVGTDIRVEPTDIVGEGV 368
Query: 331 AAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM--------------EFLCKGHQ 376
VEAP+G + +D + + AM K H
Sbjct: 369 GCVEAPRGTLVHHFKTDNRGIITDANLVVATVQNNPAMDIGVQKVAQKFIKSPEDAKPHV 428
Query: 377 LADVSAILGSLDIVFGEV 394
L + ++ + D
Sbjct: 429 LNYMEMVIRAYDPCLSCA 446
>gi|166364162|ref|YP_001656435.1| bidirectional hydrogenase hydrogenase subunit [Microcystis
aeruginosa NIES-843]
gi|166086535|dbj|BAG01243.1| bidirectional hydrogenase hydrogenase subunit [Microcystis
aeruginosa NIES-843]
Length = 474
Score = 176 bits (446), Expect = 6e-42, Method: Composition-based stats.
Identities = 66/441 (14%), Positives = 117/441 (26%), Gaps = 74/441 (16%)
Query: 20 AHGVLRLILELD-GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD G V+ V H+ + +RG EK E + + R+ + P++
Sbjct: 13 IEGHAKISIFLDDGGEVDDVRFHV-VEYRGFEKFCEGRPMWEMAGITARICGICPVSHLL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A +K+L ++IP G+ +R L + SH L+ +
Sbjct: 72 CAAKTGDKILAVQIPPAGEKLRRLMNLGQLTQSHALSFFHLSSPDFLLGWESDAAKRNIF 131
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ E ++H A+ PGGV + E + I
Sbjct: 132 GLIAADPDLARAGIRLRQFGQKVIELLGAKKIHPAWSVPGGVRSPLSEEGRQWIKERLPE 191
Query: 180 FPSALNDISD---------------------LLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
+ L + L G + + G
Sbjct: 192 SKATLYTALNLFKGLLDNLTTEIAAFGNFPSLFMGLVGKRDEWEHYGGHIRFTDSQGNIV 251
Query: 219 GVMIRGSGA---------AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRES 269
+ W K Y+ + +G R V E
Sbjct: 252 ADNLSEDNYRDYIGESVEKWSYLKFPYYKPLGYPNGIYRVGP----LARLNVCSHFGTEG 307
Query: 270 VKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVG-- 327
I + +G ++V +E LI + + G
Sbjct: 308 ADIELREYRHRVGGVATSSFYYHYARLVEILGC--LERIELLIDDPDIVSPRCRAEAGIN 365
Query: 328 --EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK--------GHQL 377
+ EAP+G D + + AM K G ++
Sbjct: 366 NLQGVGVSEAPRGTLFHDYKVDENGLIETVNLIIATGNNNLAMNQTVKQIAQHYIHGGEI 425
Query: 378 AD-----VSAILGSLDIVFGE 393
+ V A + D
Sbjct: 426 PEAMLNRVEAGIRCYDPCLSC 446
>gi|34329631|gb|AAQ63964.1| HoxH [Arthrospira platensis FACHB341]
Length = 457
Score = 176 bits (446), Expect = 6e-42, Method: Composition-based stats.
Identities = 61/442 (13%), Positives = 118/442 (26%), Gaps = 74/442 (16%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD VE H+ + RG EK E + + R+ + P++
Sbjct: 13 IEGHAKISIYLDDAGEVEDARFHV-VEFRGFEKFCEGRPMFEMAGITARICGICPVSHLL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A A +K+L +++P G+ +R + + SH L+ +
Sbjct: 72 AAAKTGDKILAVQVPPAGEKLRRMMNLAQLTQSHALSFFHLSSPDFLLGWDSEPAKRNVF 131
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ E ++HAA+ PGGV + E +E I
Sbjct: 132 GLIAADPDLARAGIRLRQFGQTVIELLGARKIHAAWAVPGGVRSPLSQEGLEWIKDRLPE 191
Query: 180 FPSALND----------------------ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF 217
L G + G
Sbjct: 192 ARQTTELALNLLKRLLDSDLASEVDIFGKFPSLFMGLVAPNGNWEHYGGHLRFIDSDGNI 251
Query: 218 SGVMIRGSGA---------AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRE 268
+ W K Y+ D +G + +
Sbjct: 252 VADGLSEDNYQDYLGEAVENWSYLKFPYYKPLGYPDGIYRVGPLARLNVCDQIGTPDADR 311
Query: 269 SVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVG- 327
++ R +R + ++V ++E+L+ + + G
Sbjct: 312 ELREFR---DRAGSRVATSSFFYHYARLVEIMACI--EAIEALVEDPDITSSRVRADAGI 366
Query: 328 ---EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFL--------CKGHQ 376
E EAP+G + + + + + AM G++
Sbjct: 367 NNLEGVGVSEAPRGTLFHHYKVNENGLIQKVNLIIATGQNNLAMNKTVTQIAKHYIHGNE 426
Query: 377 LAD-----VSAILGSLDIVFGE 393
+ + V A + D
Sbjct: 427 IPEGLLNRVEAGIRCFDPCLSC 448
>gi|34329625|gb|AAQ63961.1| HoxH [Arthrospira maxima FACHBSM]
Length = 450
Score = 176 bits (446), Expect = 6e-42, Method: Composition-based stats.
Identities = 61/442 (13%), Positives = 118/442 (26%), Gaps = 74/442 (16%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD VE H+ + RG EK E + + R+ + P++
Sbjct: 6 IEGHAKISIYLDDAGEVEDARFHV-VEFRGFEKFCEGRPMFEMAGITARICGICPVSHLL 64
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A A +K+L +++P G+ +R + + SH L+ +
Sbjct: 65 AAAKTGDKILAVQVPPAGEKLRRMMNLAQLTQSHALSFFHLSSPDFLLGWDSDPAKRNVF 124
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ E ++HAA+ PGGV + E +E I
Sbjct: 125 GLIAADPDLARAGIRLRQFGQTVIELLGARKIHAAWAVPGGVRSPLSQEGLEWIKDRLPE 184
Query: 180 FPSALND----------------------ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF 217
L G + G
Sbjct: 185 ARQTTELALNLLKRLLDSDLASEVDIFGKFPSLFMGLVAPNGNWEHYGGHLRFIDSDGNI 244
Query: 218 SGVMIRGSGA---------AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRE 268
+ W K Y+ D +G + +
Sbjct: 245 VADGLSEDNYQDYLGEAVENWSYLKFPYYKPLGYPDGIYRVGPLARLNVCDQIGTPDADR 304
Query: 269 SVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVG- 327
++ R +R + ++V ++E+L+ + + G
Sbjct: 305 ELREFR---DRAGSRVATSSFFYHYARLVEIMACI--EAIEALVEDPDITSSRVRADAGI 359
Query: 328 ---EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFL--------CKGHQ 376
E EAP+G + + + + + AM G++
Sbjct: 360 NNLEGVGVSEAPRGTLFHHYKVNENGLIQKVNLIIATGQNNLAMNKTVTQIAKHYIHGNE 419
Query: 377 LAD-----VSAILGSLDIVFGE 393
+ + V A + D
Sbjct: 420 IPEGLLNRVEAGIRCFDPCLSC 441
>gi|156741353|ref|YP_001431482.1| nickel-dependent hydrogenase large subunit [Roseiflexus
castenholzii DSM 13941]
gi|156232681|gb|ABU57464.1| nickel-dependent hydrogenase large subunit [Roseiflexus
castenholzii DSM 13941]
Length = 475
Score = 176 bits (446), Expect = 6e-42, Method: Composition-based stats.
Identities = 66/441 (14%), Positives = 110/441 (24%), Gaps = 74/441 (16%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD V H+ RG E+ E + F + R+ + P++
Sbjct: 15 IEGHAKISIHLDDNGEVREARFHV-TEFRGFERFCEGRPFWEMPGITARICGICPVSHLL 73
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV--------------- 123
A A A + LL + IP + +R L + + SH L+ +
Sbjct: 74 ASAKAGDALLSVTIPPAAEKLRRLMNLGQMVQSHALSFFHLSAPDLLLGFDSDPAQRNVF 133
Query: 124 ----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
T G R+ GS++H A+ PGGV DI
Sbjct: 134 GLMAADPTLARAGIRLRQFGQDIIAMLGGSKIHPAWAVPGGVRSAPTAVQRADIAQRLPE 193
Query: 180 FPSALNDISDLLTG-NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA----------- 227
+ + D G G G G
Sbjct: 194 ARATVLDALRRFKALLDTHHAEVATFGNFPSLFLGLVGPHGEWEHYDGRLRVVDAGGAII 253
Query: 228 ------------------AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRES 269
W K Y +G + +
Sbjct: 254 ADQVEPSRYRDIIAEAVEPWSYLKMPYYRARGYPAGMYRVGPLARLNICTRIGTLLADAE 313
Query: 270 VKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVG-- 327
+ +RQ + S + + L+ L + G
Sbjct: 314 LGEMRQ------RAGGIATSSFYYHYARLVEILAALERISLLLDDPDLDSLRLRAEAGLN 367
Query: 328 --EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME--------FLCKGHQL 377
E EAP+G + D + + AM KG Q+
Sbjct: 368 QFEGIGVSEAPRGTLFHHYTVDAHGLIQSVNLIIATGHNNLAMNRTIAQIARHYVKGDQI 427
Query: 378 AD-----VSAILGSLDIVFGE 393
++ V A + + D
Sbjct: 428 SEGALNRVEAGIRAYDPCLSC 448
>gi|302144052|emb|CBI23157.3| unnamed protein product [Vitis vinifera]
Length = 441
Score = 176 bits (446), Expect = 7e-42, Method: Composition-based stats.
Identities = 95/311 (30%), Positives = 137/311 (44%), Gaps = 51/311 (16%)
Query: 74 MNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGF 133
M E A A E+L I++P R IRV+ E+ RI SHLL + D+G TP + F
Sbjct: 1 MFTEAITANAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGVQTPFFYIF 60
Query: 134 EEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTG 193
ERE + +E +G RM YFR GGV D+P ++ +CD F + + + L+
Sbjct: 61 RERELVYDLFEATTGMRMMHNYFRIGGVVVDLPHGWIDKCLDFCDYFLTGVAEYQKLIMR 120
Query: 194 NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHG 253
N IF +R +G + +E+A WG SG M++ SG WDL K YECY E D+++ K G
Sbjct: 121 NPIFLERVEGVGIIGVEEAINWGLSGPMLQASGIQWDLLKVDHYECYDEFDWEVQWQKEG 180
Query: 254 DCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIH 313
D RYLVR+ EM +KII+Q + + G GP + + R E
Sbjct: 181 DSLSRYLVRIGEMMAFIKIIQQALKGIPG----GPYENLEIRCFDRARDLELNDFE---- 232
Query: 314 HFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK 373
+ + +LQ + L K
Sbjct: 233 -----------------------------------------YRFI--SFINLQILPQLVK 249
Query: 374 GHQLADVSAIL 384
+LAD+ IL
Sbjct: 250 RMKLADIMTIL 260
>gi|34329621|gb|AAQ63959.1| HoxH [Arthrospira platensis FACHBOUQDS6]
Length = 450
Score = 176 bits (446), Expect = 7e-42, Method: Composition-based stats.
Identities = 61/442 (13%), Positives = 118/442 (26%), Gaps = 74/442 (16%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD VE H+ + RG EK E + + R+ + P++
Sbjct: 6 IEGHAKISIYLDDAGEVEDARFHV-VEFRGFEKFCEGRPMFEMAGITARICGICPVSHLL 64
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A A +K+L +++P G+ +R + + SH L+ +
Sbjct: 65 AAAKTGDKILAVQVPPAGEKLRRMMNLAQLTQSHALSFFHLSSPDFLLGWDSDPAKRNVF 124
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ E ++HAA+ PGGV + E +E I
Sbjct: 125 GLIAADPDLARAGIRLRQFGQTVIELLGARKIHAAWAVPGGVRSPLSQEGLEWIKDRLPE 184
Query: 180 FPSALND----------------------ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF 217
L G + G
Sbjct: 185 ARQTTELALNLLKRLLDSDLASEVDIFGKFPSLFMGLVAPNGNWEHYGGHLRFIDSDGNI 244
Query: 218 SGVMIRGSGA---------AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRE 268
+ W K Y+ D +G + +
Sbjct: 245 VADGLSEDNYQDYLGEAVENWSYLKFPYYKPLGYPDGIYRVGPLARLNVCDQIGTPDADR 304
Query: 269 SVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVG- 327
++ R +R + ++V ++E+L+ + + G
Sbjct: 305 ELREFR---DRAGSRVATSSFFYHYARLVEIMACI--EAIEALVEDPDITSSRVRADAGI 359
Query: 328 ---EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFL--------CKGHQ 376
E EAP+G + + + + + AM G++
Sbjct: 360 NNLEGVGVSEAPRGTLFHHYKVNENGLIQKVNLIIATGQNNLAMNKTVTQIAKHYIHGNE 419
Query: 377 LAD-----VSAILGSLDIVFGE 393
+ + V A + D
Sbjct: 420 IPEGLLNRVEAGIRCFDPCLSC 441
>gi|291570287|dbj|BAI92559.1| hydrogenase subunit of the bidirectional hydrogenase [Arthrospira
platensis NIES-39]
Length = 476
Score = 175 bits (445), Expect = 7e-42, Method: Composition-based stats.
Identities = 61/442 (13%), Positives = 118/442 (26%), Gaps = 74/442 (16%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD VE H+ + RG EK E + + R+ + P++
Sbjct: 13 IEGHAKISIYLDDAGEVEDARFHV-VEFRGFEKFCEGRPMFEMAGITARICGICPVSHLL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A A +K+L +++P G+ +R + + SH L+ +
Sbjct: 72 AAAKTGDKILAVQVPPAGEKLRRMMNLAQLTQSHALSFFHLSSPDFLLGWDSDPAKRNVF 131
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ E ++HAA+ PGGV + E +E I
Sbjct: 132 GLIAADPDLARAGIRLRQFGQTVIELLGARKIHAAWAVPGGVRSPLSQEGLEWIKDRLPE 191
Query: 180 FPSALND----------------------ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF 217
L G + G
Sbjct: 192 ARQTTELALNLLKRLLDSDLASEVDIFGKFPSLFMGLVAPNGNWEHYGGHLRFIDSDGNI 251
Query: 218 SGVMIRGSGA---------AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRE 268
+ W K Y+ D +G + +
Sbjct: 252 VADGLSEDNYQDYLGEAVENWSYLKFPYYKPLGYPDGIYRVGPLARLNVCDQIGTPDADR 311
Query: 269 SVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVG- 327
++ R +R + ++V ++E+L+ + + G
Sbjct: 312 ELREFR---DRAGSRVATSSFFYHYARLVEIMACI--EAIEALVEDPDITSSRVRADAGI 366
Query: 328 ---EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFL--------CKGHQ 376
E EAP+G + + + + + AM G++
Sbjct: 367 NNLEGVGVSEAPRGTLFHHYKVNENGLIQKVNLIIATGQNNLAMNKTVTQIAKHYIHGNE 426
Query: 377 LAD-----VSAILGSLDIVFGE 393
+ + V A + D
Sbjct: 427 IPEGLLNRVEAGIRCFDPCLSC 448
>gi|189501051|ref|YP_001960521.1| nickel-dependent hydrogenase large subunit [Chlorobium
phaeobacteroides BS1]
gi|189496492|gb|ACE05040.1| nickel-dependent hydrogenase large subunit [Chlorobium
phaeobacteroides BS1]
Length = 425
Score = 175 bits (445), Expect = 8e-42, Method: Composition-based stats.
Identities = 50/407 (12%), Positives = 106/407 (26%), Gaps = 33/407 (8%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G + + + + + R E +++ + + R+ + ++ A
Sbjct: 16 VEGHGDIRISIKEGKLIDATWAVVETPRFFEVMVKGMSAQRVPFLTSRICGICSISHALA 75
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG------------ALT 127
++E+ + I P + IR+L + SH L++ A+
Sbjct: 76 SIRSLERAMEITPPDAAEKIRLLAMHGETLQSHALHLFFLAIPDFVNTPSVLPLIKSHPE 135
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
G +E +G H GGV + + + + + L
Sbjct: 136 IVQAGLRLKEAGNAISALTTGRLTHPVSLVVGGVSKAPEKKDLLALKHQLEGVLPDLEKT 195
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA-----AWDLRKSQPYECYSE 242
I G ++ G + ++ E Y+
Sbjct: 196 DAFCKTLTIPDFTRETEFVSLYNGITYPFIGGDLLSTDGIRQNENEYLTMTNEYLEEYTT 255
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR- 301
+ + L P + ++V
Sbjct: 256 SKLTKLSRESFAAGALARFNNNYAFLHPRAKEAAETFGLRPVNHNPFMNNIAQLVECHHI 315
Query: 302 -ADMKRSMESLIHHFKLYTEG-YHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
D +E L+ + + G AVEAP+G ++ D K +
Sbjct: 316 VHDAISMIEKLLDDPLDQLKTQWTPKAGAATGAVEAPRGILYHHMEVDESGKVVKGDCII 375
Query: 360 PGYAH------------LQAMEFLCKGHQLADV-SAILGSLDIVFGE 393
P + LQA+E ++ + + S D
Sbjct: 376 PTTQNNANIHLDLSALALQALEEGKNDKEIQLLCEMAVRSYDPCISC 422
>gi|289803231|ref|ZP_06533860.1| formate hydrogenlyase subunit 5 [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 344
Score = 175 bits (445), Expect = 8e-42, Method: Composition-based stats.
Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 1/167 (0%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
DR+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELV 170
G + + F RE M E +G+R GG+ +D+ E +
Sbjct: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKEDM 342
>gi|300856032|ref|YP_003781016.1| hydrogenase 1 large chain [Clostridium ljungdahlii DSM 13528]
gi|300436147|gb|ADK15914.1| hydrogenase-1 large chain [Clostridium ljungdahlii DSM 13528]
Length = 461
Score = 175 bits (445), Expect = 9e-42, Method: Composition-based stats.
Identities = 55/427 (12%), Positives = 113/427 (26%), Gaps = 61/427 (14%)
Query: 27 ILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEK 86
++++ I+ + GLL RG EK+++ + L AV + +R+ + A A A+E
Sbjct: 20 KVQVEKNIIVDAE-TSGLLFRGFEKMLKNREPLDAVYFTERICGICSTAHAVAAATALED 78
Query: 87 LLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP------------------ 128
L I+I + +R L I +H+ + + P
Sbjct: 79 ALKIKISVNDSYMRNLIHGFEFIQNHIRHFYNLTIPSYVKMPDINPLSSNQYEDYRLPYN 138
Query: 129 --------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+ + G H GGV +I P + +
Sbjct: 139 LNKKISEDYIESIKYSRLAHEGLAILGGKAPHNHGIFVGGVTINIDPYKLTKVKSIISQI 198
Query: 181 PSA-----------LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAW 229
++ + G + G + +G +
Sbjct: 199 NKFVSSVMLEDMNIISKYYADYFKMGGAYGNFMTYGIFDKYADPEISYVGPSVLINGRKY 258
Query: 230 DLRKSQPYECYSELDFDIPIGKH------GDCYDRYLVRMMEMRESVKIIRQCVNRLLGK 283
+ ++ E + G + + E + R ++
Sbjct: 259 NFNSNKITENILHTWYTSDDETINLSKETGYSFIKSPTYNGYSMEVGPLARLILSGEYTG 318
Query: 284 NKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP-VGEVYAAVEAPKGEFGV 342
+ K ++ + + I Y +P ++ +G G
Sbjct: 319 GSSCMDRNVARVLETKKILEIMQGLADRIKLIPAEQRIYQIPDKAFGAGLIDTTRGSLGH 378
Query: 343 YLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLAD------VSAILGSL 387
++ S I P + L E G ++ D V I+ S
Sbjct: 379 WI-SIEDKFIKHYNIITPTVWNMGPRNQSGALGIGEKSLVGTKIKDIKQPIEVGRIMRSF 437
Query: 388 DIVFGEV 394
D
Sbjct: 438 DPCVSCA 444
>gi|271966192|ref|YP_003340388.1| nickel-dependent hydrogenase large subunit [Streptosporangium
roseum DSM 43021]
gi|270509367|gb|ACZ87645.1| nickel-dependent hydrogenase large subunit [Streptosporangium
roseum DSM 43021]
Length = 428
Score = 175 bits (445), Expect = 9e-42, Method: Composition-based stats.
Identities = 57/405 (14%), Positives = 112/405 (27%), Gaps = 32/405 (7%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L++ G V V +I R E L+ + + R+ + P+ + +
Sbjct: 14 VEGEGSLLVRARGGRVTDVQLNIYEPPRFFEALLRGRDHTEPPDITARICGICPVAYQMS 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG------------ALT 127
A+E G E+ + +R+L I SH L++
Sbjct: 74 ACQAIEAACGTEVTGPLRDLRLLLYYGEWIESHALHICLLHAPDFLGYDSGVAMAADHRH 133
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
G ++ G +H R GG ++ + +
Sbjct: 134 LVERGLALKKAGNELVAALGGRAIHPVNVRVGGFYRVPARAELAPVAERLRRAREEALAT 193
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ + G + A SG + G + + ++
Sbjct: 194 VEWVAGFDFPDVEHDYRFLALHHPAEYAILSGTIAVSDGTGFAAADWPAHIVEEQVPHST 253
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR-LLGKNKVGPVSASDPKIVPPKRADMKR 306
+ D YLV + + R +GPV + + + + ++
Sbjct: 254 ALHARLDGTAGYLVGALARYALNGRQLSPLARSAAEAAGLGPVCRNPFRSIVVRAVEILH 313
Query: 307 SMESLIHHFKLYTE------GYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ + I + YTE G + EAP+G DG I P
Sbjct: 314 ACDEAIRIIEDYTEPQALSMPVEPRPGVGHGVSEAPRGTLYHRYRIDGAGLIAEADIVPP 373
Query: 361 GYAHLQAMEFLCKGHQLA---DVS---------AILGSLDIVFGE 393
+ +E + H + D+ + + D
Sbjct: 374 TSQNQARIEMDLR-HLIEPRLDLPEAELAALCERAVRNHDPCISC 417
>gi|45359257|ref|NP_988814.1| F420-non-reducing hydrogenase subunit alpha [Methanococcus
maripaludis S2]
gi|45048132|emb|CAF31250.1| F420-non-reducing hydrogenase subunit alpha [Methanococcus
maripaludis S2]
Length = 418
Score = 175 bits (445), Expect = 9e-42, Method: Composition-based stats.
Identities = 62/400 (15%), Positives = 115/400 (28%), Gaps = 47/400 (11%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD V HI L RG E+ + + + R+ +
Sbjct: 12 LEGHGKVSITLDDAGKPTDVKLHITAL-RGFEQFVVGRPAEEVPRIVPRICGICQTPHHL 70
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A AV+ G E+P + +R L + SH L+ A
Sbjct: 71 ASVKAVDAAWGAEVPSAAEKLRELMHLGNMMHSHALHFYYLAAPDFVLGPDSDPAARNII 130
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
A R E G +H PGGV + + E +++ D
Sbjct: 131 GVIGAAPEVAKKAIAMRRVGQSIVETIGGRAIHPVTGVPGGVSKALSEEKRDELLNEIDE 190
Query: 180 FPSALNDISDLLTG-NRIFKQRNVNIGTVKLEDAWG-----WGFSGVMIRG---SGAAWD 230
+ D L+ N + +G + F G +R G
Sbjct: 191 MIAYGQDGIALIKSLNEKYMDLAKTLGVIDTWYLGMVKDGKHNFYGDTLRFMSPDGKQTT 250
Query: 231 LRKSQPY----------ECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVK-----IIRQ 275
K Y Y + ++ +G Y + M+ + +S+ R+
Sbjct: 251 DFKPSEYLDNIGEHVVGHNYVKYPYNKKVGYPDGLYRVGPLAMLNVCDSMPTPLAEEARK 310
Query: 276 CVNRLLGKNKVGPVSASDPKIVP--PKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAV 333
GK ++ + +++ +K +E G A+
Sbjct: 311 DFADTFGKPANQSLAYNHARLIELLASCERVKELLEDSEITSTDIKAEVEPKAGNGVGAI 370
Query: 334 EAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK 373
AP+G +D + + ++ ME +
Sbjct: 371 YAPRGTLFHNYETDDKGIVVKANMIVASTHNVPTMEKAIQ 410
>gi|87303132|ref|ZP_01085930.1| NAD-reducing hydrogenase HoxS beta subunit [Synechococcus sp. WH
5701]
gi|87282299|gb|EAQ74259.1| NAD-reducing hydrogenase HoxS beta subunit [Synechococcus sp. WH
5701]
Length = 487
Score = 175 bits (445), Expect = 9e-42, Method: Composition-based stats.
Identities = 70/452 (15%), Positives = 119/452 (26%), Gaps = 83/452 (18%)
Query: 20 AHGVLRLILELD-GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ ++LD G V H+G RG E + F + R+ + P++
Sbjct: 13 IEGHAKISIQLDAGGDVTGAHFHVGE-FRGFEAFCVGRPFSEMAAITARICGICPVSHLL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A A ++LL + IP + +R L + I SH L+ +
Sbjct: 72 AAAKTGDQLLVVTIPPAAERLRRLMNLAQIIQSHALSFFHLSSPDFLLGWDSDPAQRNVF 131
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ ER G ++H A+ PGGV + P + I
Sbjct: 132 GLIAADPELARGGIRLRQFGQAVIERLGGRKIHPAWAVPGGVRSPLQPPDRDWIRSRLSE 191
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ +L + G G R LR
Sbjct: 192 AVATTRGALELFKRLLDGPLAAEA-AVFGDFPSLFIGLVGPDGRWEHYGGRLRLIDSTGA 250
Query: 240 ----------------------------YSELDFDIPIGKHGDCY-----DRYLVRMMEM 266
Y + + P+G Y R V
Sbjct: 251 LVTAELPADGLSAEQLGGLLAEAVDPSTYLKFPYYKPLGPEAGSYRVGPLARLNVCERIG 310
Query: 267 RESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV 326
E + + G+ +++ A ++E+L+ L
Sbjct: 311 HEQADRELLELRQRGGRVVTSSFLYHLARLIEILAA--LEAIEALLDDPALCDTHVRAHA 368
Query: 327 G----EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM-------------- 368
G E EAP+G + D + + +AM
Sbjct: 369 GVNAREAVGVSEAPRGTLFHHYRVDSDGLIEAVNLIIATGQNNRAMNRTITQIARQYIQA 428
Query: 369 -------EFLCKGHQLADVSAILGSLDIVFGE 393
+ +G L V A + D
Sbjct: 429 GPADAGVPEIAEG-LLNRVEAGIRCFDPCLSC 459
>gi|17228261|ref|NP_484809.1| hydrogenase large subunit [Nostoc sp. PCC 7120]
gi|17130111|dbj|BAB72723.1| hydrogenase large subunit [Nostoc sp. PCC 7120]
Length = 483
Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats.
Identities = 63/445 (14%), Positives = 120/445 (26%), Gaps = 73/445 (16%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD V H+ RG EK E + + R+ + P++
Sbjct: 13 IEGHAKISIYLDDTGQVNDARFHV-TEFRGFEKFCEGRPLWEMPGITARICGICPVSHLL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA------------- 125
A A A +++L + IP +R L + + SH L+ +
Sbjct: 72 ASAKAGDRILSVTIPPTATKLRRLMNLGQILQSHALSFFHLSAPDFLLGMDSDPQKRNIF 131
Query: 126 ------LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ E G+++H A+ PGGV + + E I
Sbjct: 132 GLIAAQPELARGGIRLRQFGQEIIEVLGGAKIHPAWAVPGGVREPLSAEGRTHIQERIPE 191
Query: 180 FPSALNDISDLLTG-NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLR-----K 233
+ D D + +++ G G+ G +
Sbjct: 192 ARTIALDALDRFKKLLKDYEKEAQTFGNFPSLFMGLVTPDGLWETYDGYIRFVDSAGNII 251
Query: 234 SQPYECYSELDF-DIPIGKHGDCYDRYLVRMMEMRE-------SVKIIRQCVNRLLGKNK 285
+ + +F + Y + + S + RL +
Sbjct: 252 ADKLDPTRYQEFIGEAVQPDSYLKSPYYRPLGYPDQHDQCRIDSGMYRVGPLARLNICSH 311
Query: 286 VGPV-------------------SASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV 326
+G S + +E L++ + +
Sbjct: 312 IGTTLADRELREFRELTSGTAKSSFFYHYARLIEILACIEHIEILLNDPDILSTRLRSEA 371
Query: 327 G----EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME------------- 369
G E EAP+G + D + + + AM
Sbjct: 372 GVNQLEGVGVSEAPRGTLFHHYQVDENGLLQKVNLIIATGQNNLAMNRTVAQIARHFIQG 431
Query: 370 -FLCKGHQLADVSAILGSLDIVFGE 393
+ +G L V A + + D
Sbjct: 432 TEILEG-MLNRVEAGIRAFDPCLSC 455
>gi|86743171|ref|YP_483571.1| nickel-dependent hydrogenase, large subunit [Frankia sp. CcI3]
gi|86570033|gb|ABD13842.1| nickel-dependent hydrogenase, large subunit [Frankia sp. CcI3]
Length = 430
Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats.
Identities = 47/405 (11%), Positives = 104/405 (25%), Gaps = 30/405 (7%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G RL++++ V+ I R E + + + + R+ + P+ + +
Sbjct: 15 VEGEGRLLIKITDGRVDEAHLKIFEPPRFFEAFLRGRAYTEPPDITARICGICPVAYQMS 74
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA------------LT 127
A+E++ + + +R L I SH L+V +
Sbjct: 75 ALAAIEQICDVTVTGPPAALRRLIYCGEWIESHALHVFLLHLPDFLGYDSALHLAQDQPA 134
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
G ++ G +H R GG ++ + ++ + D
Sbjct: 135 LVKLGLTLKKAGNTLMTVIGGRAIHPVNARVGGWYRAPRRRDLTELVGQLEQARDIARDT 194
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ + + G + +G + ++ +
Sbjct: 195 ARFTAALDFPEDELHQTFVALHQPGEYPVERGRIASTAGLDIAPADYDRHFTEEQVPWSN 254
Query: 248 PIGKHGDCYDRYLVRM--MEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ YL + ++ P I+ +
Sbjct: 255 ALHSTLAAGGSYLTGPLARFALGAERLAPAARETAAEIGLRPPERNPYRSIIVRCIEMVH 314
Query: 306 RSMESLIHHFKLYTEGY-----HVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ E+L G Y EAP+G D KI P
Sbjct: 315 AADEALRIIADYTEPDPSALEAPPRAGTGYGVTEAPRGLLYHRYTIDHNGTILDAKIVPP 374
Query: 361 GYAHLQAMEFLCKG-----HQLAD------VSAILGSLDIVFGEV 394
+ + +E +G L++ + + D
Sbjct: 375 TAQNQRPIEEDLRGVVERFMNLSEPELALRCERAIRNYDPCISCA 419
>gi|220909407|ref|YP_002484718.1| nickel-dependent hydrogenase large subunit [Cyanothece sp. PCC
7425]
gi|219866018|gb|ACL46357.1| nickel-dependent hydrogenase large subunit [Cyanothece sp. PCC
7425]
Length = 473
Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats.
Identities = 66/440 (15%), Positives = 126/440 (28%), Gaps = 71/440 (16%)
Query: 20 AHGVLRLILELD--GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQE 77
G ++ + L+ GE V+ H+ + +RG EK E + F + R+ + P++
Sbjct: 12 IEGHAKISIYLNEAGE-VDDARFHV-VEYRGFEKFCEGRPFTEMAGITARICGICPVSHL 69
Query: 78 HAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG------------- 124
A A +K+L + IP + +R L + I SH L+ +
Sbjct: 70 LAAAKTGDKILAVTIPPAAEKLRRLMNLAQLIQSHALSFFHLSSPDFLLGWESDPAQRNV 129
Query: 125 ------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
G R+ E ++HAA+ PGGV + E E I
Sbjct: 130 FGLIAADPELARAGIRLRQFGQTIIELLGARKIHAAWSVPGGVRSPLAAESREWIVERLP 189
Query: 179 SFPSALNDISDLL--TGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA--------- 227
+ ++ +L + + G G +G G
Sbjct: 190 ESFATVDLALNLFKTLLDNQLQPEINIFGEFPTLFMGLVGKNGEWEHYGGHLRFTDSQGN 249
Query: 228 --------------------AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMR 267
W K Y+ D +G + + +
Sbjct: 250 IVADHLSEDDYQDYLGEAVEPWSYLKFPYYKPLGYPDGIYRVGPLARLN---VCQTIGTP 306
Query: 268 ESVKIIRQCVNRLLGKNKVGPVSASDPKI-VPPKRADMKRSMESLIHHFKLYTEGYHVPV 326
++ + +++ +R G + I + +++ M V
Sbjct: 307 KADRELQEFRDRSNGHPTSSFLYHYARLIEILACLENVQHLMADPDILSGRVRSQGGVNC 366
Query: 327 GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK--------GHQLA 378
E EAP+G + D + + + AM G ++
Sbjct: 367 LEGVGVSEAPRGTLFHHYQVDENGLIQKVNLIIATGQNNLAMNKTVAQIAKHYIYGTEIP 426
Query: 379 D-----VSAILGSLDIVFGE 393
+ V A + D
Sbjct: 427 EGLLNRVEAGIRCFDPCLSC 446
>gi|312137252|ref|YP_004004589.1| coenzyme f420-reducing hydrogenase, alpha subunit [Methanothermus
fervidus DSM 2088]
gi|311224971|gb|ADP77827.1| coenzyme F420-reducing hydrogenase, alpha subunit [Methanothermus
fervidus DSM 2088]
Length = 408
Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats.
Identities = 64/386 (16%), Positives = 115/386 (29%), Gaps = 27/386 (6%)
Query: 21 HGVLRLILELDGEIVERVDPHIGLLH-----RGTEKLIETKTFLQAVPYFDRLDYVAPMN 75
G L++E+D E + G RG EK++ K A R+ V P+
Sbjct: 14 EGHAELVMEVDDEGIV----TKGYYFSITPVRGLEKMVLGKDPETAPVLTQRICGVCPIP 69
Query: 76 QEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVT----TQAMDVGALTPPLW 131
A A+E LGIEIP +L+R L I SH ++ +
Sbjct: 70 HTLASTEAIEDSLGIEIPETARLLRELLCAAHHINSHAIHQFLIAKDFVPEEKMKDVINS 129
Query: 132 GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLL 191
E R+ E+ G +H R GG+ ++I + LN+ + +
Sbjct: 130 ISEIRKNAQYVVEKVGGEGIHPPDVRIGGMAKNITELTRKRAYAKLKQLAPKLNEHVEQM 189
Query: 192 TGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGK 251
K +G G + + + P Y + +
Sbjct: 190 IEFIEEKGLPKGLGAHDQPTFATHPIYGDREKFDLERFT--EVMPESWYDDPEIGKRACS 247
Query: 252 HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP--KRADMKRSME 309
YD V + R + G G V+ + + A ++
Sbjct: 248 TIPLYDGRNVEVG--------PRARLVEFQGFKDKGVVAQHIARALEMKTALARALNILD 299
Query: 310 SLIHHFKLYTEGYHVPVGE-VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
L ++ + G+ +EAP+G K P ++ +
Sbjct: 300 KLNTSARVRVDYDDRGSGKLGLGVIEAPRGTDIHMAKV-ENGKIQYYNALVPTTWNIPTI 358
Query: 369 EFLCKGHQLADVSAILGSLDIVFGEV 394
+G+ ++ + D
Sbjct: 359 GQATEGYHHKYGPHVVRAYDPCLSCA 384
>gi|288931979|ref|YP_003436039.1| nickel-dependent hydrogenase large subunit [Ferroglobus placidus
DSM 10642]
gi|288894227|gb|ADC65764.1| nickel-dependent hydrogenase large subunit [Ferroglobus placidus
DSM 10642]
Length = 521
Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats.
Identities = 60/499 (12%), Positives = 127/499 (25%), Gaps = 126/499 (25%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G + L+++ +V+ + + RG E+++ + A R+ V + A
Sbjct: 11 IEGHHGVRLKVEDGVVKDAH-SLATMFRGFERIVIGRDPKDAPILLQRICGVCHNDHRLA 69
Query: 80 YALAVEKL------LGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT------ 127
A+E G +P L+R + + + H +
Sbjct: 70 SLFAIENAAKLTNEWGAGLPEPAVLLRNAIAALQFVFDHPVWAYALTGPDYCDAIHKTGL 129
Query: 128 ---------PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
+++L G H PGGV +I ++ +
Sbjct: 130 VRFDPIVGRGVKEAVLAQKRLHQAMTYIGGKVPHIMTPIPGGVSLEIDANIISKLISIVL 189
Query: 179 SFPSAL------------------------------------------NDISDLL----- 191
+ DL+
Sbjct: 190 DVKKWALGVGLGKTALEHARDVAGYVIDDVSKKLEKGVVEPPNDPEVGKGLYDLVSLILV 249
Query: 192 TGNRIFKQRNVNI------GTVKLEDAWGWGFSGVMIRGSGAAWDLR---KSQPYECYSE 242
N K G + + + SG +D R + Y Y +
Sbjct: 250 MANLGLKDMGERTPTMLAYGFLADPNGELFFPSGFFNGKELEKFDYRNIGEDVKYSYYDD 309
Query: 243 LDFDIPIGKH-------------GDCYDRYLVRMMEMRESVKIIRQC------------- 276
+G+ + + E + R
Sbjct: 310 EAGGSYVGEEDTRKLIPKYGKAGAYTWAKAPRYKGMPAEVGPLARMVAKGYRDGWEVGDP 369
Query: 277 --VNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYT-----EGYHVPVGEV 329
+ + L + + + + + +E+L+ K Y Y + G+
Sbjct: 370 LDLRKNLAGGRTASNALARNIARIQEELVLIDYLENLLLELKDYAGKKAYVKYEINDGDG 429
Query: 330 YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLA-- 378
EAP+G G ++ G K ++ AP + + +E G ++
Sbjct: 430 VGLREAPRGALGHWVKIRG-GKIENYQVIAPTTWNVSPRDSKDQMGPLEEALIGTPISES 488
Query: 379 ---DVSAILGSLDIVFGEV 394
+V ++ S D+
Sbjct: 489 DQWNVIRVIHSFDLCLACT 507
>gi|150399744|ref|YP_001323511.1| nickel-dependent hydrogenase large subunit [Methanococcus vannielii
SB]
gi|150012447|gb|ABR54899.1| nickel-dependent hydrogenase large subunit [Methanococcus vannielii
SB]
Length = 418
Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats.
Identities = 60/400 (15%), Positives = 113/400 (28%), Gaps = 47/400 (11%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD V +I L RG E+ + + + R+ +
Sbjct: 12 LEGHGKVTITLDDSGKPTDVKLNITAL-RGFEQFVVGRPAEEVPRIVPRICGICQTAHHL 70
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A AV+ G +IPI + +R L I SH L+ A
Sbjct: 71 ASVKAVDAAWGAQIPIAAEKLRELMHLGNMIHSHALHFYYLAAPDFVLGPDADPAVRNII 130
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
A R E G +H PGG + E ++I D+
Sbjct: 131 GVIGAAPEVAKKAIAMRRFGQTIVEAVGGRPIHPVTGIPGGQAKVFTEEKRDEILTEMDA 190
Query: 180 FPSALNDISDLLTG-NRIFKQRNVNIGTVKLED-----AWGWGFSGVMIRG---SGAAWD 230
+ ++ N + +G + F G +R G
Sbjct: 191 MIEFGQEGLAIMKSLNEKYLDTIKTLGVIDTWYLGLVKDGKHNFYGDTLRFMSPDGKETM 250
Query: 231 LRKSQPY----------ECYSELDFDIPIGKHGDCYDRYLVRMMEMRESV--KIIRQCVN 278
K Y Y + ++ +G Y + M+ + +S+ + +
Sbjct: 251 DFKPSEYTDYLGEHTVDHSYVKYPYNKKVGYPDGLYRVGPLAMINVCDSMATPLAEEARK 310
Query: 279 RL---LGKNKVGPVSASDPKIVPP--KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAV 333
GK ++ + +++ K+ +E G V
Sbjct: 311 EFVETFGKPANQSLAYNQARLIELLSACERTKQLLEDPEITSTDIKAEVQPKAGNGVGVV 370
Query: 334 EAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK 373
AP+G +D + + ++ ME +
Sbjct: 371 YAPRGTLFHNYETDDNGIVVKANMIVATTHNVPTMEKAIQ 410
>gi|116749651|ref|YP_846338.1| nickel-dependent hydrogenase large subunit [Syntrophobacter
fumaroxidans MPOB]
gi|116698715|gb|ABK17903.1| nickel-dependent hydrogenase, large subunit [Syntrophobacter
fumaroxidans MPOB]
Length = 482
Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats.
Identities = 61/447 (13%), Positives = 112/447 (25%), Gaps = 78/447 (17%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G R+ + L+ V+ + + RG EK + + + + P
Sbjct: 13 VEGHARVTIVLEDSGKVKDARVQVIEM-RGFEKFCVGRPVEEMPRIVTAICGICPWAHHM 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A + A + L G++IP + IR + SHLL+ A
Sbjct: 72 ASSKAADALFGVQIPETARKIREAAYSAHIVHSHLLHFFFLAAPDFLSDPGADFGVRNII 131
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
R + + PGG + + E +++
Sbjct: 132 GLAARNPDLVRRAVRARHMAQEMTGIIAANATRPDAVVPGGFSRAMSEEQRQELLPMARE 191
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDL---RKSQP 236
D Q VK E + GF G + G + R QP
Sbjct: 192 VLEFTRFAVDFAKEKVFIPQWP----QVKEEPSLATGFLGTVDANGGLNFYDGRLRLKQP 247
Query: 237 -----YECYSELDFDIPIGKHGDCYDRYLVRM----------------MEMRESVKIIRQ 275
Y+ + D+ I + + + S+ I
Sbjct: 248 GDNGNYKEFEPKDYRDFIEEQAMDWSYVKFPFVRSAGRLSLDPEDPVGVYRSNSLARINV 307
Query: 276 C--------------VNRLLGKNKVGPVSASDPKIVPPKR--ADMKRSMESLIHHFKLYT 319
C +G+ +++ +
Sbjct: 308 CDHITTPLAQQELLEFRETVGRLPQHSFLQHWARLIEALYNSERAVELLSDPEITNPNVR 367
Query: 320 EGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM--EFLCKGHQL 377
E G VEAP+G +D + + + AM + L ++
Sbjct: 368 ETVTPVAGRGVGVVEAPRGALIHDYEADDKGFITKVNLIVATTHNSAAMNIDVLMAARRI 427
Query: 378 AD-----------VSAILGSLDIVFGE 393
D V ++ + D F
Sbjct: 428 LDGGRSDEEALNKVEMVIRAYDPCFSC 454
>gi|303243537|ref|ZP_07329879.1| nickel-dependent hydrogenase large subunit [Methanothermococcus
okinawensis IH1]
gi|302486098|gb|EFL49020.1| nickel-dependent hydrogenase large subunit [Methanothermococcus
okinawensis IH1]
Length = 418
Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats.
Identities = 58/400 (14%), Positives = 116/400 (29%), Gaps = 47/400 (11%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD + V HI L RG E+ + + + R+ +
Sbjct: 12 VEGHGKVTITLDESGKPKDVKLHITAL-RGFEQFVIGRPAEEVPRIVPRICGICQTAHHL 70
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD---------------- 122
A AV+ G E+P +R L I SH L+ A
Sbjct: 71 ASVKAVDAAWGAEVPSAASKLRELMLMGNMIHSHALHFYYLAAPDLVVGPDADPAVRNII 130
Query: 123 ---VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
A R+ E+ G +H PGG+ + + E +++ D+
Sbjct: 131 GIIDKAPEVAKKAIALRKFGQTLVEKTGGRPIHPVSGIPGGISKSLKEEERDELLKEIDT 190
Query: 180 FPSALNDISDLLTG-NRIFKQRNVNIGTVKLED--------AWGWGFSGVMIRGSGAAWD 230
D DL+ N + ++G + + + + G
Sbjct: 191 VVEYAKDGIDLIKSLNEQYMDVAKSLGVIDTWYLGLVKDGKHNFYDDTLRFLSPDGKEKM 250
Query: 231 LRKSQPY----------ECYSELDFDIPIGKHGDCYDRYLVRMMEMRESV--KIIRQCVN 278
K Y Y + ++ +G Y + M+ + +S+ + +
Sbjct: 251 EFKPAEYLDYIGEHVVSHNYVKYPYNKKVGYPEGLYRVGPLAMVNVCDSMATPLAEEARK 310
Query: 279 RLL---GKNKVGPVSASDPKIVP--PKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAV 333
+ G ++ + +++ K + G V
Sbjct: 311 EFMDTFGSPANQSLAYNHARLIELLAACERAKELLNDSEITSTDTRAEVQPKAGNGVGVV 370
Query: 334 EAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK 373
EAP+G +D + + ++ ME +
Sbjct: 371 EAPRGVLIHNYETDDRGVVVKANMIVATTHNVPTMEKAIQ 410
>gi|289192301|ref|YP_003458242.1| nickel-dependent hydrogenase large subunit [Methanocaldococcus sp.
FS406-22]
gi|288938751|gb|ADC69506.1| nickel-dependent hydrogenase large subunit [Methanocaldococcus sp.
FS406-22]
Length = 418
Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats.
Identities = 56/404 (13%), Positives = 109/404 (26%), Gaps = 55/404 (13%)
Query: 20 AHGVLRLILELD-GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD + V HI L RG E+ + + + R+ +
Sbjct: 12 LEGHGKVTITLDENGKPKDVKLHITAL-RGFEQFVIGRPAEEVPRIVPRICGICQTAHHL 70
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A AV+ G+EIP + +R L I SH L+ A
Sbjct: 71 ASVKAVDAAWGVEIPEPAKKLRELMHIGNMIHSHALHFYFLAAPDFVLGPEADPAIRNIV 130
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
A R+ E G +H PGG + + E +++ D
Sbjct: 131 GVIDKAPEVAKQAIALRKFGQKIVEAVGGKAIHPVTGIPGGQAKRLTEEERDELLKDADQ 190
Query: 180 FPSALNDISDLLTG-NRIFKQRNVNIGTVKLED--------AWGWGFSGVMIRGSG---- 226
+ +L+ N + ++ +G + + + + G
Sbjct: 191 MIEYAKNGVELIKQLNEQYMEQIKTLGVIDTYYLGLVKDGKHNFYDDTLRFLSPDGKEKV 250
Query: 227 ---------------AAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVK 271
+ K Y+ D +G + E
Sbjct: 251 DFKPAEYLDYIGEHVVPHNYVKYPYYKKAGYPDGIYRVGPLAMLNVCDAMETPIAEE--- 307
Query: 272 IIRQCVNRLLGKNKVGPVSASDPKIVP--PKRADMKRSMESLIHHFKLYTEGYHVPVGEV 329
R+ + G ++ + +++ K +E G
Sbjct: 308 -YRKEFFDIFGFPANQSLAYNHARLIELVEACEKAKILLEDNDITSDDIKADVEPKAGNG 366
Query: 330 YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK 373
V AP+G +D + + ++ ME +
Sbjct: 367 VGVVYAPRGVLIHNYETDDNGIVVKANMIVATTHNVPTMEKAIQ 410
>gi|303245126|ref|ZP_07331442.1| nickel-dependent hydrogenase large subunit [Methanothermococcus
okinawensis IH1]
gi|302484509|gb|EFL47457.1| nickel-dependent hydrogenase large subunit [Methanothermococcus
okinawensis IH1]
Length = 474
Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats.
Identities = 70/443 (15%), Positives = 136/443 (30%), Gaps = 75/443 (16%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + D +++V H+ + RG EK +E + A Y R+ + +
Sbjct: 12 VEGHGKITVSFDESGNLDKVHFHVVEV-RGFEKFLEGRYIEDAPTYTPRICGICQVAHHL 70
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV--------------- 123
A A AV+K+ G++IP +L+R L + + SH L+ A
Sbjct: 71 ASAKAVDKVFGVKIPETAKLLRNLMHQGATVHSHALHFYALAAPDLMYPTTDDILKRNLL 130
Query: 124 ----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
E R+ + G +H GG + + E +++ D
Sbjct: 131 GMAKENPEVVKEAIELRKIGQTIVKTVGGRAIHPVTAVVGGQSKSLGEEERDELLKLSDR 190
Query: 180 FPSALNDISDL---LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSG---AAWDLRK 233
L L N I + ++IG + G G G K
Sbjct: 191 AIELSEKSIKLGKKLIEN-IKENDLLDIGYFES-YHAGMVNDGTHELYDGKIRVVNPKGK 248
Query: 234 SQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRL------------- 280
++ SE I G Y ++ + E ++RL
Sbjct: 249 TEYEFDPSEYSNYIAEGVKPYSYLKFPYLKDKGEEEGIYRVNTLSRLNVSDKMATPLAQK 308
Query: 281 --------LGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV-----G 327
GK P+ + +++ + ++ L+ + K+ G
Sbjct: 309 YYEEFIEEFGKPCHYPILFNYARLIELLSSA--EKIKELLENDKIVGTDIRAEPADDIVG 366
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLAD-------- 379
E VEAP+G + +D + + AM+ + ++A+
Sbjct: 367 EGVGCVEAPRGTLIHHFKTDNDGIIKDTNLVVATVQNNPAMDLGVR--KVAEKYLKKPED 424
Query: 380 --------VSAILGSLDIVFGEV 394
+ ++ + D
Sbjct: 425 ANEKILNYMEMVIRAYDPCLSCA 447
>gi|237800542|ref|ZP_04589003.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas syringae pv. oryzae str. 1_6]
gi|331023402|gb|EGI03459.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas syringae pv. oryzae str. 1_6]
Length = 168
Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats.
Identities = 70/172 (40%), Positives = 102/172 (59%), Gaps = 4/172 (2%)
Query: 225 SGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKN 284
+G +DLRK++PY Y +F++P+ +GD YDR +VR+ EMR+S+KII QC+ +
Sbjct: 1 TGCDFDLRKARPYSGYENFEFEVPLAANGDAYDRCMVRVEEMRQSIKIIDQCMRNM---- 56
Query: 285 KVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
GP A P PP + + +E+LI HF + G +P E + +EA KG YL
Sbjct: 57 PEGPYKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYL 116
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
SDGG YR +IR P + HLQ + + +G +AD+ A LGS+D V +VDR
Sbjct: 117 TSDGGTMSYRTRIRTPSFPHLQQIPSVIQGSMVADLIAYLGSIDFVMADVDR 168
>gi|298575368|ref|NP_248187.2| methylviologen-reducing hydrogenase subunit alpha
[Methanocaldococcus jannaschii DSM 2661]
gi|41018413|sp|Q58592|VHUA_METJA RecName: Full=F420-non-reducing hydrogenase vhu subunit A
gi|1591820|gb|AAB99194.1| methylviologen-reducing hydrogenase, alpha chain (vhuA)
[Methanocaldococcus jannaschii DSM 2661]
Length = 418
Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats.
Identities = 54/404 (13%), Positives = 110/404 (27%), Gaps = 55/404 (13%)
Query: 20 AHGVLRLILELD-GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD + V HI L RG E+ + + + R+ +
Sbjct: 12 LEGHGKVTITLDENGKPKDVKLHITAL-RGFEQFVVGRPAEEVPRIVPRICGICQTAHHL 70
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A A++ G+EIP + +R L I SH L+ A
Sbjct: 71 ASVKAIDAAWGVEIPEPAKKLRELMHIGNMIHSHALHFYFLAAPDFVLGPDADPAIRNIV 130
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
A R+ E G +H PGG + + E +++ D
Sbjct: 131 GVIDKAPDVAKQAIALRKFGQKIVEAVGGKAIHPVTGIPGGQAKRLTEEERDELLKDADQ 190
Query: 180 FPSALNDISDLLTG-NRIFKQRNVNIGTVKLED--------AWGWGFSGVMIRGSG---- 226
+ +L+ N + ++ +G + + + + G
Sbjct: 191 MIEYAKNGVELIKQLNEQYMEQIKTLGVIDTYYLGLVKDGKHNFYDDTLRFLSPDGKEKV 250
Query: 227 ---------------AAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVK 271
++ K Y+ + +G + E K
Sbjct: 251 EFKPEEYLNYIGEYVVPYNYVKHPYYKKVGYPEGVYRVGPLAMLNVCDEMETPLAEEYRK 310
Query: 272 IIRQCVNRLLGKNKVGPVSASDPKIVP--PKRADMKRSMESLIHHFKLYTEGYHVPVGEV 329
+ + G ++ + +++ K +E G
Sbjct: 311 EFLE----IFGFPANQSLAYNHARLIELVEACEKAKILLEDNDITSDDIKADVEPKAGNG 366
Query: 330 YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK 373
V AP+G +D + + ++ ME +
Sbjct: 367 VGVVYAPRGVLIHNYETDENGIVVKANMIVATTHNVPTMEKAIQ 410
>gi|20094367|ref|NP_614214.1| coenzyme F420-reducing hydrogenase, alpha subunit [Methanopyrus
kandleri AV19]
gi|19887432|gb|AAM02144.1| Coenzyme F420-reducing hydrogenase, alpha subunit [Methanopyrus
kandleri AV19]
Length = 416
Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats.
Identities = 63/385 (16%), Positives = 109/385 (28%), Gaps = 18/385 (4%)
Query: 21 HGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +L+L +D E VER RG E L + + R+ + A
Sbjct: 15 EGHAKLVLYVDDEGYVERAFYLNTSAVRGFEALAKGRPAEFVQVAVMRICGICQATHGTA 74
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVT-----TQAMDVGALTPPLWGFE 134
A A E+ +GIE P G+L+R L + RI SH+L+ + + +
Sbjct: 75 SAEAFERAMGIEPPKDGKLLRELCALGNRIQSHVLHQLLVLDDFVEDESEKVEAVKRIQQ 134
Query: 135 EREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTG- 193
R + G +H R GG+ ++I + + + + +
Sbjct: 135 IRRIGQYVVDVVGGEGIHPPNIRIGGMAENISEAARRKLYRRLREARELMMEQHEFMVNI 194
Query: 194 ----NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
G G R + + P E Y E ++
Sbjct: 195 VERFGDENDLDIDEFGRHDQPFLATHPTYGDPDRLD--MDRVVELLPIEYYGEEHKEVAY 252
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
G + E R + + V + + ++
Sbjct: 253 QHRGQ----IPLYDGVPVEVGPRARYILFDGVDPRGVLYIHVLRSQETLAAIDRAMTILD 308
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
L K E + G EAP+G + +I A + +E
Sbjct: 309 ELNTSGKTLAE-WEPKAGVGIGVHEAPRGTNVHIAKVNEKGIVEDYRIIAASTWNFPVVE 367
Query: 370 FLCKGHQLADVSAILGSLDIVFGEV 394
+G I+ DI
Sbjct: 368 KAIEGENEEYAEVIMRCYDIUASCA 392
>gi|31747661|gb|AAO38311.1| Lfe131p1 [Leptospirillum ferrooxidans]
Length = 222
Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats.
Identities = 87/225 (38%), Positives = 134/225 (59%), Gaps = 6/225 (2%)
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+D+GA++ + F ERE+L+ +E G+R+ + Y+R GGV D+P E + + + D+F
Sbjct: 4 LDIGAMSVFFYTFREREELLDLFEIICGARLTSNYYRVGGVDADLPKEFITRLYKFLDTF 63
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ + + LL NRI+ R NI + EDA +G SG +RGSG +DLRK +PY Y
Sbjct: 64 EKNIGEYNTLLETNRIWLARTKNIAVITGEDAINFGVSGPSLRGSGVDYDLRKYEPYGVY 123
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
++++ +P+G +GD YDRY +R+ EMRES KIIRQC++RL G + D KI P
Sbjct: 124 DQVEWSVPVGTNGDVYDRYWIRIEEMRESSKIIRQCLDRLPA----GKILTDDHKITFPD 179
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLI 345
+ + +ME+LIHHF L + E+ E P+ E G Y++
Sbjct: 180 KGKVMHNMETLIHHFLLVSRDSRFLQ-EILTGTETPR-ELGFYIV 222
>gi|51244865|ref|YP_064749.1| methylviologen-reducing hydrogenase, alpha chain [Desulfotalea
psychrophila LSv54]
gi|50875902|emb|CAG35742.1| probable methylviologen-reducing hydrogenase, alpha chain
[Desulfotalea psychrophila LSv54]
Length = 456
Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats.
Identities = 59/439 (13%), Positives = 110/439 (25%), Gaps = 70/439 (15%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD VE HI L RG EK IE + + +R+ + P
Sbjct: 19 IEGHAKIAIHLDDTGNVENAFLHIQSL-RGFEKFIEGRPAEEVPRLVNRICGICPWMHHI 77
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A AV++ + G +R L + + +L+ A
Sbjct: 78 ASNKAVDRCFDVTPTATGYKLRELCQVLAHVNDKILHFFFLAAPDFVLGPDADHSVRNVM 137
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
A + R+ + E+ +G +H GG + + E +++ +
Sbjct: 138 GVVKAAPELASKVVKMRQLGQMMLEKFAGKAIHPIAGVVGGFSKPMVEEERKELLEGART 197
Query: 180 FPSALNDISDLLTGNRIFK-------------------QRNVNIGTVKLEDAWGWGFSGV 220
D N K R + + G
Sbjct: 198 LLDFSTYALDFAINNVFSKYMDVIGELGVIKTGFLGTVDRQDGSLRLFDGNLRMMKADGS 257
Query: 221 MIRGSGAAW----------DLRKSQPYECYSELDFDIPIGKHGDCY-----DRYLVRMME 265
+ PY + FD+ +G Y R V
Sbjct: 258 FEEFQNRDYADHIGEHTVPWGYSKMPYAKFWNEGFDMSLGAPKGIYRSNTLARINVCDKI 317
Query: 266 MRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP--KRADMKRSMESLIHHFKLYTEGYH 323
+ + L G+ + +++ +E
Sbjct: 318 STPKAQAALEAFRELFGRPAQQTLLYHYARLIEMVYACERTIELLEWDGITDPHVRAEVT 377
Query: 324 VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGH---QLAD- 379
G VEAP+G +D + ++ M + + D
Sbjct: 378 PRAGRGVGVVEAPRGTLIHDYTTDDDGCVTSANLIVGTTHNIAPMNMSVRQAASSLIKDG 437
Query: 380 ---------VSAILGSLDI 389
V + + D
Sbjct: 438 KYDEGILNRVEMAVRAYDP 456
>gi|221639924|ref|YP_002526186.1| Uptake hydrogenase [Rhodobacter sphaeroides KD131]
gi|221160705|gb|ACM01685.1| Uptake hydrogenase [Rhodobacter sphaeroides KD131]
Length = 475
Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats.
Identities = 72/475 (15%), Positives = 124/475 (26%), Gaps = 100/475 (21%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
GP + G L + LE+ V + L+RG E+++E + A+ R+ +
Sbjct: 6 VGPFN-RVEGDLEVHLEVADGAVTAARVNAP-LYRGFERMLEGRDPRDALTITPRICGIC 63
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP--- 129
++Q A A A+ +G+ G+ + L + HL + M +
Sbjct: 64 SISQSVAAARALGAAMGLVPAPAGERVAALIHAVENAADHLTHFNLFFMPDFSRPAYAGR 123
Query: 130 ------------------LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
R L+ +G H +PGGV +
Sbjct: 124 SWHGRAVARFTAMEGSAQREAVAARADLLHILGLLAGKWPHTLAVQPGGVTRAPGAAERM 183
Query: 172 DIGCWCDSFPSALN--------DISDLLTGNRIFKQRNVNIGTVKLE------------- 210
I SF L + L + LE
Sbjct: 184 RILSSLRSFRRHLERTLFGGPLEAFAALETEAALLSWGRGDAGLFLEIAADLGLAGLGCG 243
Query: 211 ------DAWGWGFSGVMIRG--------------------SGAAWDLRKSQPYECYSELD 244
G S A + P E + D
Sbjct: 244 AGRYLSFGAYPLPEGPAFAAGTWQAGAPVPLDPGLIREDLSHAWMLGEAAHPSEGRTLPD 303
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNK----VGPVSASDPKIVPPK 300
+I + + + E+ + RQ V G ++ +++
Sbjct: 304 EEI--REAAYSWCKAPRLDGRPMETGALARQVVAGHPLARDLARQGGVLARVGARLLELA 361
Query: 301 RADMKRSMESLIHHFKL-----YTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRC 355
R + ME L G + VEA +G G ++ G R
Sbjct: 362 RTQIL--MEELAQGIDPAARFMVAMGPLPREAQGAGLVEAARGALGHWVRLRG-GLIERY 418
Query: 356 KIRAPGYAHLQ---------AMEFLCKGHQLA-------DVSAILGSLDIVFGEV 394
+I AP + +E G +A V ++ S D
Sbjct: 419 QIVAPTTWNFSPRDAEGVPGPLEAALVGAPVAPGETTPLSVQHVVRSFDPCMVCT 473
>gi|206889231|ref|YP_002249644.1| hydrogenase/sulfur reductase, alpha subunit [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|206741169|gb|ACI20226.1| hydrogenase/sulfur reductase, alpha subunit [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 442
Score = 173 bits (440), Expect = 3e-41, Method: Composition-based stats.
Identities = 59/417 (14%), Positives = 116/417 (27%), Gaps = 45/417 (10%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +++E+ +E I R E + ++ +A R+ + A
Sbjct: 15 VEGHGNIVVEVKDGKLEICRLEIVESPRFFEAFLRGRSIYEAPHITCRICGICSCGHTLA 74
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV------------GALT 127
A E LGI+ + L+R L ++ SH+L++
Sbjct: 75 SIQAAEDALGIKPTEQTVLLRKLLLHYEQLDSHILHIYLLVAPDLVGVPSFVPLIKSHPD 134
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
+ + + G +H GG + +E++ + +
Sbjct: 135 VVIRALRMKRLCNELCDILVGRHVHPISAVIGGFTKLPSEIDLEEMHKKLLALQKDIEVT 194
Query: 188 SDLL--TGNRIFKQRNVNIGTVKLEDAWG--WGFSG--VMIRGSGAAWDLRKSQPYECYS 241
+L F++ I V ED + +G G R S + ++ Y+
Sbjct: 195 IELFKDLKFPEFERDTEYIALVNDEDEYPLLYGDIGSTDGYRVSKYEYKNVTNEFIVPYA 254
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP--P 299
+ + + K L + P + +IV
Sbjct: 255 SAKRTKWHRESYAVGALARFNLNYEKLHPKAKEAAATLGLKPKCINPYLNTVAQIVECVH 314
Query: 300 KRADMKRSMESLIHHFKLYTEGYHV----------PVGEVYAAVEAPKGEFGVYLISDGG 349
D R +E+L Y E GE AVE P+G + D
Sbjct: 315 CVEDAIRIIETLWQKGINYDEVVVPDINEHGLLPQRAGEGVGAVEVPRGLLIHHYECDER 374
Query: 350 NKPYRCKIRAPGYAHLQAME-FLCKGHQLADVS------------AILGSLDIVFGE 393
P + +E + K + ++ ++ + D
Sbjct: 375 GIFRNANCIIPTNQNTHNIELDMLK--LVPEIINQSPEEIRLSLEMLVRAYDPCISC 429
>gi|282899674|ref|ZP_06307638.1| Nickel-dependent hydrogenase, large subunit [Cylindrospermopsis
raciborskii CS-505]
gi|281195553|gb|EFA70486.1| Nickel-dependent hydrogenase, large subunit [Cylindrospermopsis
raciborskii CS-505]
Length = 482
Score = 173 bits (440), Expect = 3e-41, Method: Composition-based stats.
Identities = 69/444 (15%), Positives = 118/444 (26%), Gaps = 71/444 (15%)
Query: 20 AHGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD E V+ H+ RG EK + F + R+ + P++
Sbjct: 12 IEGHAKISIYLDDEGHVDDARFHV-TEFRGFEKFCVGRPFAEMPGITARICGICPVSHLL 70
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A A +K+L + IP +R L + I SH L+ +
Sbjct: 71 ASAKTGDKILSVTIPEVATKLRRLMNLGQIIQSHALSFFHLSAPDLLLGMDSEPTKRNIF 130
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ E G ++H A+ PGGV + E I
Sbjct: 131 GLIGIDPELARGGIRLRQFGQEIIELLGGKKIHPAWAVPGGVSDPLTTENRTHIQNRIPE 190
Query: 180 FPSALNDISDLLTG-NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLR------ 232
S + + L +++ G G+ G +
Sbjct: 191 AKSTVLNAIALFKKLLENYQKEAQTFGNFPSLFMGLVTAQGLWETYDGHLRFVDSGGNIV 250
Query: 233 -----------------------KSQPYECYSELDFDIPIG-KHGDCYDRYLVRMMEMRE 268
KS Y D G L R+ +
Sbjct: 251 ADKLDADNYHEFIGEAVQEDSYLKSPYYRPLGYPDGKDHCRLDSGMYRVGPLARLNICSQ 310
Query: 269 SVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK--RSMESLIHHFKLYTEGYHVPV 326
+ R G V +S + +E L+ + +
Sbjct: 311 IGTPLADQELREFRSYGSGTVKSSFFYHYARLIEILASVEHIEILLDDPDILSTRLRAAA 370
Query: 327 G----EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME--------FLCKG 374
G E EAP+G + D + + + AM +G
Sbjct: 371 GINRLEAVGVSEAPRGTLFHHYRIDENGLMQKVNLIIATGQNNLAMNRTVAQIARHFIQG 430
Query: 375 HQLAD-----VSAILGSLDIVFGE 393
Q+ + V A + + D
Sbjct: 431 SQVQEGMLNRVEAGIRAFDPCLSC 454
>gi|75910857|ref|YP_325153.1| nickel-dependent hydrogenase, large subunit [Anabaena variabilis
ATCC 29413]
gi|1032481|emb|CAA55878.1| hydrogenase large subunit [Anabaena variabilis ATCC 29413]
gi|75704582|gb|ABA24258.1| NAD(P)-dependent nickel-iron dehydrogenase catalytic subunit
[Anabaena variabilis ATCC 29413]
Length = 487
Score = 173 bits (440), Expect = 3e-41, Method: Composition-based stats.
Identities = 62/444 (13%), Positives = 117/444 (26%), Gaps = 71/444 (15%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD V H+ RG EK E + + R+ + P++
Sbjct: 13 IEGHAKISIYLDDTGQVSDARFHV-TEFRGFEKFCEGRPLWEMPGITARICGICPVSHLL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV--------------- 123
A A A +++L + IP +R L + + SH L+
Sbjct: 72 ASAKAGDRILSVTIPPTATKLRRLMNLGQILQSHALSFFHLTAPDLLLGMDSDPQKRNIF 131
Query: 124 ----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ E G+++H A+ PGGV + + E I
Sbjct: 132 GLIAAQPELARGGIRLRQFGQEIIEVLGGAKIHPAWAVPGGVREPLSVEGRTHIQERIPE 191
Query: 180 FPSALNDISDLLTG-NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAW--------- 229
+ D D + +++ G G+ G
Sbjct: 192 ARTIALDALDRFKKLLKDYEKEVQTFGNFPSLFMGLVTPDGLWETYDGYIRFVDSAGNII 251
Query: 230 ----DLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNK 285
D + Q + + + +S + RL +
Sbjct: 252 ADKLDPARYQEFIGEAVQPDSYLKSPYYRPLGYPDQHDQCRIDSGMYRVGPLARLNICSH 311
Query: 286 VGPV-------------------SASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV 326
+G S + +E L+ + +
Sbjct: 312 IGTTLADRELREFRELTSGTAKSSFFYHYARLIEILACIEHIEMLLDDPDILSNRLRSEA 371
Query: 327 G----EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME--------FLCKG 374
G E EAP+G + D + + + AM +G
Sbjct: 372 GVNQLEAVGVSEAPRGTLFHHYQVDENGLLQKVNLIIATGQNNLAMNRTVAQIARHFIQG 431
Query: 375 HQLAD-----VSAILGSLDIVFGE 393
++ + V A + + D
Sbjct: 432 TEIPEGMLNRVEAGIRAFDPCLSC 455
>gi|158340828|ref|YP_001521996.1| hydrogenase large subunit HoxH [Acaryochloris marina MBIC11017]
gi|158311069|gb|ABW32682.1| hydrogenase large subunit HoxH [Acaryochloris marina MBIC11017]
Length = 494
Score = 173 bits (440), Expect = 3e-41, Method: Composition-based stats.
Identities = 62/447 (13%), Positives = 107/447 (23%), Gaps = 76/447 (17%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD V H+ RG EK E + F + R+ + P++
Sbjct: 13 IEGHAKISIYLDDAGEVTDARFHV-TEFRGFEKFCEGRPFWEMPGITPRICGICPVSHLL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTT-------------------Q 119
A A A +++L + IP + +R L + I SH L+
Sbjct: 72 ASAKAGDQILAVHIPPAAEKLRRLMNLGQIIQSHALSFFHLSSPDLLLGWESDPAQRNVF 131
Query: 120 AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
+ G R+ + G ++H A+ PGGV + + E I
Sbjct: 132 GLMAAEPDLARSGIRLRQFGQEVIQHLGGQKIHPAWAVPGGVRSALTDQGREQIRAGLLE 191
Query: 180 FPSALNDISDLLTG-NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLR------ 232
S G G+ G +
Sbjct: 192 VRSTALSTLKRFKDLLEDHASEARIFGNFPSLFMGLINPKGLWEHYQGCLRFVDSVGNII 251
Query: 233 -----------------------KSQPYECYSELD----------FDIPIGKHGDCYDRY 259
KS Y D +G
Sbjct: 252 ADHLDPSQFQSFIGEAVQTDSYLKSPYYRPLGYPDQTPGLCRLESGMYRVGPLARLNVCD 311
Query: 260 LVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYT 319
+ + ++ RQ + + +++ +E
Sbjct: 312 RMGTPLADQELQEFRQ--RGNGTVTSSFYYHYARLIEILACIERIEQQIEDPGLCQPPLR 369
Query: 320 EGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME--------FL 371
V E EAP+G + D + + AM
Sbjct: 370 AQADVNQLEGVGVSEAPRGTLFHHYQVDATGLLQSVNLIIATGQNNLAMNRTVAQIARHY 429
Query: 372 CKG-----HQLADVSAILGSLDIVFGE 393
G L V A + + D
Sbjct: 430 LHGPDIPESMLNRVEAGIRAFDPCLSC 456
>gi|81301364|ref|YP_401572.1| NAD-reducing hydrogenase HoxS beta subunit [Synechococcus elongatus
PCC 7942]
gi|81170245|gb|ABB58585.1| NAD-reducing hydrogenase HoxS beta subunit [Synechococcus elongatus
PCC 7942]
Length = 476
Score = 173 bits (440), Expect = 3e-41, Method: Composition-based stats.
Identities = 70/442 (15%), Positives = 125/442 (28%), Gaps = 75/442 (16%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD E H+ + +RG EK E + F + R+ + P++
Sbjct: 13 IEGHAKISVFLDDQGNAEAARFHV-VEYRGFEKFCEGRPFTEMAGITARICGICPVSHLL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A A +K+L ++IP + +R L + I SH L+ +
Sbjct: 72 AAAKTGDKILAVQIPPAAENLRRLINLAQIIQSHALSFFHLSSPDFLLGWDSDPARRNLF 131
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ E G ++HAA+ PGGV + E + I +
Sbjct: 132 GLIAADPETARAGIRLRQFGQQLIEWLGGRKIHAAWAVPGGVRSLLSQEGMVWIRDRLPA 191
Query: 180 FPSALNDISDLL--TGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA---------- 227
+ + D +R F++ G +G G
Sbjct: 192 ELATVRATLDRFKRLLDREFREETAVFGDFPSLFMGLVADNGDWEHYGGHLRFVDSQGRI 251
Query: 228 -------------------AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRE 268
W K Y+ + + +G R V
Sbjct: 252 IADRLREDDYASFLGEAVEPWSYLKFPYYKPWGYPEGMYRVGP----LARLNVCDRIGTA 307
Query: 269 SVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVG- 327
+ RQ + G ++V + + ++ L T G
Sbjct: 308 GAEAERQELRDRAGGTVTSSFLYHYARLVEILAS--LEKIAEMVEDPNLQTGFLRSQAGV 365
Query: 328 ---EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME--------FLCKGHQ 376
E EAP+G + D K R + + AM + +
Sbjct: 366 NCLEAIGVSEAPRGTLFHHYRVDSHGKIERVNLIIATGQNNLAMNRTVTQIAQHYIRHGE 425
Query: 377 LAD-----VSAILGSLDIVFGE 393
+ + V A + D
Sbjct: 426 VQESFLNRVEAGIRCFDPCLSC 447
>gi|150402893|ref|YP_001330187.1| nickel-dependent hydrogenase large subunit [Methanococcus
maripaludis C7]
gi|150033923|gb|ABR66036.1| nickel-dependent hydrogenase large subunit [Methanococcus
maripaludis C7]
Length = 418
Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats.
Identities = 62/400 (15%), Positives = 114/400 (28%), Gaps = 47/400 (11%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD V HI L RG E+ + + + R+ +
Sbjct: 12 LEGHGKVSITLDDSGKPTDVKLHITAL-RGFEQFVIGRPAEEVPRIVPRICGICQTPHHL 70
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A AV+ G EIP +R L + SH L+ A
Sbjct: 71 ASVKAVDAAWGAEIPSAAGKLRELMHLGNMMHSHALHFYYLAAPDFVLGPDSDPAARNII 130
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
A R E G +H PGGV + + E +++ D
Sbjct: 131 GVIGAAPEVAKKAIAMRRVGQSIVETIGGRAIHPVTGVPGGVSKALSEEKRDELLKEIDE 190
Query: 180 FPSALNDISDLLTG-NRIFKQRNVNIGTVKLED-----AWGWGFSGVMIRG---SGAAWD 230
+ + L+ N + +G + F G +R G
Sbjct: 191 MIAFGQEGVALIKALNEQYMDLAKTLGVIDTWYLGLVKDGKHNFYGDTLRFMSPDGKQIT 250
Query: 231 LRKSQPY----------ECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVK-----IIRQ 275
K Y Y + ++ +G Y + M+ + +S+ R+
Sbjct: 251 DFKPSEYLDNIGEHVVEHNYVKYPYNKKVGYPEGLYRVGPLGMINVCDSMPTPLAEEARK 310
Query: 276 CVNRLLGKNKVGPVSASDPKIVPP--KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAV 333
GK ++ + +++ +K +E G A+
Sbjct: 311 DFADTFGKPANQSLAYNHARLIELLGSCERVKELLEDSEITSTDIKAEVEPKAGNGVGAI 370
Query: 334 EAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK 373
AP+G +D + + ++ ME +
Sbjct: 371 YAPRGTLIHNYETDDKGIVVKANMIVATTHNVPTMEKAIQ 410
>gi|254498956|ref|ZP_05111659.1| cytochrome c3 hydrogenase alpha chain [Legionella drancourtii
LLAP12]
gi|254351814|gb|EET10646.1| cytochrome c3 hydrogenase alpha chain [Legionella drancourtii
LLAP12]
Length = 430
Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats.
Identities = 55/418 (13%), Positives = 121/418 (28%), Gaps = 31/418 (7%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
S++ IN P G L L + ++ + I R EK +E +++ + +
Sbjct: 2 SKNIAINV-PILTRVEGEGALELHIRNCKIKTLKLKIYEPPRLFEKFLEGRSYTDVLDFV 60
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG- 124
R+ + P+ + + A+E+ GI+ + +R L+ + SH +++ A+
Sbjct: 61 ARICGICPVAYQMSATQAIEQCFGIQPTPWVRTMRRLFYCGEWLESHSMHIHFLALPDFL 120
Query: 125 -----------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDI 173
G + + G +H GG ++ + +
Sbjct: 121 GFKSIPEMAKIYPDEVRRGMRLQALGNDLIKLLGGRSVHPVGACVGGFYKAPNCSEINIM 180
Query: 174 GCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRK 233
+ N + + G + + G ++ G + +
Sbjct: 181 LAKAKARLDDCNALIRWIAGLSLPDNCHDFTCVSLYHPTEYPLNEGRLVSDHGLNISIEE 240
Query: 234 SQPYECYSELDFDIPIG---KHGDCYDRYLVRMMEMRESVKIIRQ-CVNRLLGKNKVGPV 289
Y S++ + + ++ L R+ + I + L +
Sbjct: 241 FATYFKESQVPYSNALHCLLQNKPYLVGPLARVNNCFGHLPIEIHLLLQNLKINFPSRNM 300
Query: 290 SASDPKIVPPKRADMKRSMESLIH--HFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISD 347
S + S+ L H + VG + EAP+G D
Sbjct: 301 YHSIIARAVEIYYCVLESIHILEHYKTPQDTHPEVEPQVGIGFGCTEAPRGMLWQQFQFD 360
Query: 348 GGNKPYRCKIRAPGYAHLQAMEFLCK------------GHQLADVSAILGSLDIVFGE 393
+I P + +E + G + I+ + D
Sbjct: 361 DKGLVTSARIVPPTSQNQARIEEDLRISLEQFGLNKDEGALRSYSEMIIRNYDPCISC 418
>gi|297619114|ref|YP_003707219.1| coenzyme F420 hydrogenase subunit alpha [Methanococcus voltae A3]
gi|297378091|gb|ADI36246.1| coenzyme F420 hydrogenase, subunit alpha [Methanococcus voltae A3]
Length = 410
Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats.
Identities = 62/406 (15%), Positives = 116/406 (28%), Gaps = 33/406 (8%)
Query: 6 SRSFTINFGPQHPAA--HGVLRLILELDGEIVER------VDPHIGLLHRGTEKLIETKT 57
++ IN P G +L+L++D + + V P RG EK + K
Sbjct: 2 GKTVEIN-----PTTRHEGHTKLVLKVDDDGIVEKGNYLSVTPV-----RGFEKFLVGKP 51
Query: 58 FLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVT 117
A R + P+ + A+E GI P G L+R L ++ SH L+
Sbjct: 52 AEFAPIAVSRFCGICPIAHATSAVEAIEDACGIIPPKDGLLLRELTGLGNKMHSHPLHEF 111
Query: 118 ----TQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDI 173
+ + + R+ + G +HA + GG+ ++I P I
Sbjct: 112 LVAPDFVPENDRVEYIKRIQQMRKTGQYIVDTIGGEAIHAPNIKVGGMAKNITPSAASKI 171
Query: 174 GCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF-SGVMIRGSGAAWDLR 232
C F + + L + + +G+ + G+ D
Sbjct: 172 FYKCKEFEKLAKEQVEYLVPIFENRMLVDGTEIPEKLGYHDFGYLATDATYGNRENIDQS 231
Query: 233 KSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSAS 292
K Y Y + D+ + M R R + G ++
Sbjct: 232 KVIEYTPYDVYEKDVAVQACTTIPRYNGRLMEVGP------RARFARFHDFKEKGAMAIH 285
Query: 293 DPKIVP--PKRADMKRSMESLIHHFKLYTEGYHVPVGE--VYAAVEAPKGEFGVYLISDG 348
+ +E L + + GE EA +G D
Sbjct: 286 IARAYENVVHVKRAMEIIEELNVDGITRAKDPILGDGEKLGLGVHEAARGHNTHQASIDE 345
Query: 349 GNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEV 394
+ ++ + +G ++ + D
Sbjct: 346 KGRIKYYNAIVATTWNIPLIGKAVEGTHYKFAEHVVRAYDPCVSCA 391
>gi|328953386|ref|YP_004370720.1| Hydrogen dehydrogenase [Desulfobacca acetoxidans DSM 11109]
gi|328453710|gb|AEB09539.1| Hydrogen dehydrogenase [Desulfobacca acetoxidans DSM 11109]
Length = 427
Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats.
Identities = 54/405 (13%), Positives = 108/405 (26%), Gaps = 32/405 (7%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L L++ V I R E + + +A R+ + P+ + +
Sbjct: 13 VEGEGALKLKIKDGRVTEAKFSIFEAPRFFEGFLRGRRGDEAPDLTARICGICPVAYQMS 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG------------ALT 127
A+E +LG+ + + + +R L I SH L+V
Sbjct: 73 STHALEGILGLSVDGQLRELRRLLYCGEWIESHALHVYFLHAPDFLGYSSAIALAQDYPE 132
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
G ++ G +H R GG ++ + + + +
Sbjct: 133 IVKEGLALKKAGNDLVALLGGREIHPVNVRVGGFYRTPRVQELRALADQLQAALKIALKT 192
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ G G ++ G + + + +
Sbjct: 193 VRWVAGFDFPDAAADYEFVALRHPEEYPLCQGRLVSSRGLDISAFEYEDHFAEEHVRHST 252
Query: 248 PIGKHGDCYDRYLV----RMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP---- 299
+ H RYLV R + + + Q V R +G +
Sbjct: 253 ALQSHRIGAGRYLVGPMARFNLNFDRLTPLAQAVAREVGLTPDCRNPFQSIIVRSVELVF 312
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
+ R ++S + G A EAP+G D ++
Sbjct: 313 ACEEALRIIQSYERPDRPCLTAPW-RAGRGCAISEAPRGSLYHRYTLDEQGVILNARLVP 371
Query: 360 PGYAHLQAMEFLC-----KGHQLAD------VSAILGSLDIVFGE 393
P + +++E L D + + + D
Sbjct: 372 PTSQNQKSVEDDLSRVAEANLHLDDDRLTLILEQAIRNYDPCISC 416
>gi|194337505|ref|YP_002019299.1| nickel-dependent hydrogenase large subunit [Pelodictyon
phaeoclathratiforme BU-1]
gi|194309982|gb|ACF44682.1| nickel-dependent hydrogenase large subunit [Pelodictyon
phaeoclathratiforme BU-1]
Length = 424
Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats.
Identities = 55/423 (13%), Positives = 111/423 (26%), Gaps = 40/423 (9%)
Query: 7 RSFTINFGPQHPA-AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
R + I H + G + + + + I R E +I+ + +
Sbjct: 3 RDYAIAI--HHLSRVEGHADIRITVRKGQLVEAQWAIVETPRFFEVMIKGMSAERVPFLT 60
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG- 124
R+ + ++ A A+E+ + I P+ + R+L + SH L++
Sbjct: 61 SRICGICSISHALASIRALERAMAIAPPVAAEKTRLLAMHGETLQSHALHLFFLIAPDFA 120
Query: 125 -----------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDI 173
G + +E +G H GG+ + E + ++
Sbjct: 121 NSASVLPLMESHPDLVRAGLQLKELGNEISAITAGRCTHPVSLVVGGLSKAPDKEKLLNL 180
Query: 174 GCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRK 233
AL S + + G ++ G +
Sbjct: 181 RTMIQERKPALATASAFFRSLVMPDFTRETEFISLRNGSSYPSIGGSLVSSDGVKREEND 240
Query: 234 SQPYECYSELDFDIPIGK---HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVS 290
+DF L R + + + LG +
Sbjct: 241 YLLMTNEYTMDFSTSKFTRLSRESSVAGALARFNNNHDLLHPGAKEAAESLGLKPICHNP 300
Query: 291 ASDPKIVPPKRADMKRSMESLIHHFKLYT-----EGYHVPVGEVYAAVEAPKGEFGVYLI 345
+ + E LI+ Y G AVEAP+G ++
Sbjct: 301 FMTNIAQLVECVHILEDAEQLINSLLDMELREIKTPYVPQAGAATGAVEAPRGILYHHME 360
Query: 346 SDGGNKPYRCKIRAPGYAHLQAMEFLCKG---------------HQLADVSAILGSLDIV 390
+D K + P + + + +LA + ++ S D
Sbjct: 361 TDAAGKVVKANCIIPTTQNNGNIHHDLRALTEQGLREGKSDREIEKLA--TMLVRSYDPC 418
Query: 391 FGE 393
Sbjct: 419 ISC 421
>gi|117925782|ref|YP_866399.1| nickel-dependent hydrogenase, large subunit [Magnetococcus sp.
MC-1]
gi|117609538|gb|ABK44993.1| nickel-dependent hydrogenase, large subunit [Magnetococcus sp.
MC-1]
Length = 484
Score = 173 bits (439), Expect = 5e-41, Method: Composition-based stats.
Identities = 67/479 (13%), Positives = 115/479 (24%), Gaps = 100/479 (20%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
GP G L + +E V + L+RG E+++ K A+ Y R+ +
Sbjct: 7 LGPF-SRVEGDLEVQIERHHNRVADA-WVVSPLYRGFERMLVGKEPQDALVYVPRICGIC 64
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP--- 129
+ Q A A A+ + G+ P G+L L + HL + M A
Sbjct: 65 SVAQSAAAAQALAQAAGVRPPENGRLASQLMLAAENVADHLTHFYLFFMPDFARPIYAGQ 124
Query: 130 ------------------LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
R + G H +PGG + +
Sbjct: 125 PWYEGVLKRFKAVDGAASRVALPARASFLHLMGILGGRWPHTLALQPGGSTRGLEARDKS 184
Query: 172 DIGCWCDSFPSALND------------------ISDLLTGNRIFKQRNVNI--------- 204
+ F + L + +
Sbjct: 185 QLRGVVAGFRAFLEETLFGASLESLVALESGQSLLAWAAEQPCQNSDFRWFLQVAETLEL 244
Query: 205 -----GTVKLEDAWGWGFSGVMIRGSGA--------------------AWDLRKSQPYEC 239
G +G + +G AW +P
Sbjct: 245 AQLGRGHDGFMSYGAYGQGEEALFAAGVWQQGGLRALDPGAIREDVSHAWMHPDREPRHP 304
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
+ +G + + E + RQ V + S + +
Sbjct: 305 FEGRTLPDAEQPNGYSWCKAPRLNGLPMEVGALARQQVAGHPLVRDLVAQSGGNVRNRVI 364
Query: 300 KRA--------DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNK 351
R M+ + L E G+ VEA +G G + D +
Sbjct: 365 ARLLEIARVVLAMEGWIAQLEPRAPFGVESPLPEQGQGVGLVEAARGGLGHWYRMD-KGR 423
Query: 352 PYRCKIRAPGYAHLQ---------AMEFLCKGHQL----AD---VSAILGSLDIVFGEV 394
+I AP + +E + D V I+ S D
Sbjct: 424 LSHAQIVAPTTWNFSPRDAAGVRGPLEQALLNSPIRAGEQDPVAVQHIVRSFDPCMVCT 482
>gi|298530372|ref|ZP_07017774.1| nickel-dependent hydrogenase large subunit [Desulfonatronospira
thiodismutans ASO3-1]
gi|298509746|gb|EFI33650.1| nickel-dependent hydrogenase large subunit [Desulfonatronospira
thiodismutans ASO3-1]
Length = 518
Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats.
Identities = 64/485 (13%), Positives = 124/485 (25%), Gaps = 112/485 (23%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + ++ + G ++RG E ++ + L + R+ + ++ A
Sbjct: 17 VEGDLEIQAAIEDGCITEAR-SSGTMYRGFENMMTGRGTLDGLVITPRICGICSLSHLTA 75
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG--------------- 124
A+E + G P + +R L + + S + M
Sbjct: 76 AVEALEDISGTTPPDNARRLRNLALMVEMLQSDIRQSILMFMVDFTNEGAYASHPLSSLL 135
Query: 125 -------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWC 177
+ T + +E +L+ G H ++ PGGV + +
Sbjct: 136 MERYAPLSGTSAIQSIQETRRLLEVVAIIGGQWPHTSFMVPGGVTSSLGTPELLRCCMII 195
Query: 178 DSFPSA------------------LNDISDLLTGNRIFKQ-------------------- 199
++F S + D L +Q
Sbjct: 196 ENFQSWYEKNVLGCSISRWHQVDSAQAMLDWLEEIESHRQGDLGLFLRLAYDAGLDTMGQ 255
Query: 200 ----RNVNIGTVKLEDAWGWGFSGVM------IRGSGAAWDLR------KSQPYECYS-- 241
G E G G GS A+D PY
Sbjct: 256 GPDGFLCYGGLPLPEHTEVKGQQGQFIPAGFARHGSIQAFDPANIAEDISQCPYSQKHTS 315
Query: 242 -------ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL------GKNKVGP 288
++ + + E+ + V R +
Sbjct: 316 VHPWDSSTNPDPYAPRENSYSWIKAPRYNGHAVETGPLAEMLVRRDPLFTDLIQRQGSSV 375
Query: 289 VSASDPKIVPPKRA--DMKRSMESLI--HHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
+S ++ P R M + L K Y +P G+ ++A +G G ++
Sbjct: 376 LSRQLARLTRPARLIPAMLAWLRELSSNPQGKFYHRVKKIPDGQGAGLIQAVRGGLGHWV 435
Query: 345 ISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLAD------VSAILGSLDI 389
K +I P + A E +G + + ++ S D
Sbjct: 436 QIV-DQKIEHYQIITPSTWNGSPRDGDNNPGAWEKALEGTFIKNPENPVEAGHVVRSFDP 494
Query: 390 VFGEV 394
Sbjct: 495 CLVCA 499
>gi|218755814|ref|ZP_03534610.1| formate hydrogenase hycE [Mycobacterium tuberculosis GM 1503]
gi|289764203|ref|ZP_06523581.1| formate hydrogenase hycE [Mycobacterium tuberculosis GM 1503]
gi|289711709|gb|EFD75725.1| formate hydrogenase hycE [Mycobacterium tuberculosis GM 1503]
Length = 567
Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats.
Identities = 77/346 (22%), Positives = 116/346 (33%), Gaps = 38/346 (10%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
+ I GP H + GE + R+ + +HRG EKL + AV +R+
Sbjct: 142 YEIPVGPMHAGLIEPGHFRFSVAGETIVRLKARLWFVHRGIEKLFHGRPATAAVDLAERI 201
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
A++LA+E LGIE+P +R L E+ R+ +H ++ A DVG
Sbjct: 202 SGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVELERLYNHAADLGALANDVGYSLA 261
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
RE L+ +G R+ R GGV P+ E + L +++
Sbjct: 262 NAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRALPDTDE-----LAALAVDLAEVA 316
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
L N + R + +DA G G + R SG D R P L
Sbjct: 317 TLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDARVEHPTIV---LPITEI 373
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
GD RY VR E S + + V + GP+ +
Sbjct: 374 GAPDGDVLARYTVRRDEFAASAALAQHIVE-----SHTGPIEYAA--------------- 413
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYR 354
T VE +G + D + R
Sbjct: 414 ----------TLHPVGAPSSGIGIVEGWRGTIVHRVEIDVDGRITR 449
>gi|89902614|ref|YP_525085.1| nickel-dependent hydrogenase large subunit [Rhodoferax
ferrireducens T118]
gi|89347351|gb|ABD71554.1| nickel-dependent hydrogenase, large subunit [Rhodoferax
ferrireducens T118]
Length = 507
Score = 173 bits (438), Expect = 6e-41, Method: Composition-based stats.
Identities = 61/439 (13%), Positives = 131/439 (29%), Gaps = 67/439 (15%)
Query: 20 AHGVLRLILELD-GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ L LD V++V HI + RG E+ I+ + + + RL + P++
Sbjct: 28 VEGHGKVTLLLDANHRVQQVRLHI-VEFRGFEQFIQGRPYWEVPVMVQRLCGICPVSHHL 86
Query: 79 AYALAVEKLLG-IEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV-------------- 123
A + A ++++G + + IR L + SH L+ A
Sbjct: 87 AASKAFDRVVGALPVTPTADKIRRLMHYGQVMQSHALHFFYLAAPDLLFGFDSEVNRRNI 146
Query: 124 -----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
G R+ +G R+H + PGGV++ + P+ +
Sbjct: 147 VGVAQAHPDIARKGVLLRKFGQELIRATAGKRVHGSGSVPGGVNKHVSPQDRALLQRDVA 206
Query: 179 SFPSALNDISDLLTG-NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAA--------- 228
+ + + + + G+ + G + G
Sbjct: 207 QMIAWAQEAVLIAKQLHAQNPALYDSFGSFRSNLLSLVRMDGALDLYDGVLRARDTAGAI 266
Query: 229 -WDLRKSQPYECYSELDFDIPIGK-------------HGDCYDRYLVRMMEMRESVKIIR 274
+D Q Y E + ++ + S R
Sbjct: 267 LFDGASDQDYLGLIEEEVKPWTYMKFPFLKSLGPELGWYRVGPLARLQNCDFIPSPLAER 326
Query: 275 QCVN---RLLGKNKVGPVSASDPKIVPPK-RADMKRSM--ESLIHHFKLYTEGYHVPVGE 328
+ ++ G+ ++ ++V ++ + + + I +L G G
Sbjct: 327 ERLDFIAWGRGEPIQATLAYHWARMVEMLHCVEVIQGLLDDPDILGGELIASGPRQRGG- 385
Query: 329 VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK--------GHQLAD- 379
+EAP+G + + C + + QAM + G +L +
Sbjct: 386 -VGVIEAPRGTLFHHYEVGDDDLVTMCNLIVATTHNNQAMNEAVRSVAREYLDGRELTEG 444
Query: 380 ----VSAILGSLDIVFGEV 394
+ + + D
Sbjct: 445 LLNHIEVAIRAYDPCLSCA 463
>gi|167819737|ref|ZP_02451417.1| putative hydrogenase subunit [Burkholderia pseudomallei 91]
Length = 558
Score = 173 bits (438), Expect = 6e-41, Method: Composition-based stats.
Identities = 75/300 (25%), Positives = 113/300 (37%), Gaps = 2/300 (0%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H + GE V R++ +G HRG E+L E L R+
Sbjct: 191 EIAVGPIHAGVIEPGHFRFSVVGEKVLRLEERLGYAHRGVERLFERADALAGSRLAARIA 250
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + AY +A+E+ L I +P R +R L E R+ +HL ++ D G
Sbjct: 251 GDSTVAFAWAYCMALEQALRIRVPDRALRLRALLLERERVANHLGDLGALGNDAGFAVGL 310
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+E + +R G R PGGV +DI + I CD + +
Sbjct: 311 AHFSRLKEDWLRMQDRIFGHRYLMDAIVPGGVARDIAADDAAAIVAQCDRIEREVRAMQT 370
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + R G + + +G G+ R SG D+R Y L D+
Sbjct: 371 IYDDQSGLQDRFAGTGRLDAQAVAHFGVCGLAARASGQPRDVRADHRLAPYDALRIDVSR 430
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD R VR E ES++ IR + L ++ VP RAD + E
Sbjct: 431 DARGDVAARVAVRFAETYESMRAIRALLADLPDDGLAAEIAPGA--TVPGARADAGGACE 488
>gi|288561162|ref|YP_003424648.1| methyl viologen-reducing hydrogenase alpha subunit MvhA
[Methanobrevibacter ruminantium M1]
gi|288543872|gb|ADC47756.1| methyl viologen-reducing hydrogenase alpha subunit MvhA
[Methanobrevibacter ruminantium M1]
Length = 470
Score = 172 bits (437), Expect = 6e-41, Method: Composition-based stats.
Identities = 61/439 (13%), Positives = 121/439 (27%), Gaps = 65/439 (14%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD VE H+ + RG EK ++ + + R+ + +
Sbjct: 7 IEGHAKITVHLDEAGNVEDTRLHV-MEFRGFEKFLQGRPAEEVPRIVPRICGICDVQHHL 65
Query: 79 AYALAVEKLLGI---EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV------------ 123
A A AV+++ G +I +R L + + SH L+ A
Sbjct: 66 AAAKAVDQIYGFNDDDILPAAYKMRELMNWGSYMHSHALHFYFLAAPDLVVPNGTRKTRN 125
Query: 124 ------GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWC 177
L + R + G +H PGG+ ++ E D+
Sbjct: 126 VFQIIQDMPEVALQAIKIRRNGLDIVSATGGRPIHPTSSTPGGISTELDEETQADLLAKA 185
Query: 178 DSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS--GVMIRGSGAAWDLRKSQ 235
+L K V + + G +G K
Sbjct: 186 KENVELAQATIELAVPILEEKIDLVKTLGYFGDTRHCGIVTKDGDWDVYNGKVRIKDKDG 245
Query: 236 P-YECYSELDFDIPIGKHGDCYDRYLVRM----------------------MEMRESVKI 272
Y Y L++ + +H Y +M ++ +
Sbjct: 246 SIYTEYRNLEYKDIVAEHVKPYSWLKFPYIKELGYPEGIYRVAPLSRINVCDKMPDAAPL 305
Query: 273 IRQCVNRLLGKNK--VGPVSASDPKIVPPKR-ADMKRSMESLIHHFKLYTEGYHVPVGEV 329
+ + + P+ +++ A+M + + GE
Sbjct: 306 AQGALEDFRDRFGYAQYPLLFHWARLIELLASAEMAVDALEQDLSGDKFPDALERTAGEG 365
Query: 330 YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLC---------KGHQLAD- 379
VEA +G + +D + I + AME G ++ D
Sbjct: 366 AGIVEAARGTLIHHYTTDDEGLITQANIIVATIQNNPAMEMGIQQVAKDYIKPGVEVDDK 425
Query: 380 ----VSAILGSLDIVFGEV 394
+ ++ + D
Sbjct: 426 IFNLMEMVIRAHDPCLSCA 444
>gi|167849587|ref|ZP_02475095.1| putative hydrogenase subunit [Burkholderia pseudomallei B7210]
gi|167898185|ref|ZP_02485587.1| putative hydrogenase subunit [Burkholderia pseudomallei 7894]
Length = 552
Score = 172 bits (437), Expect = 7e-41, Method: Composition-based stats.
Identities = 75/300 (25%), Positives = 113/300 (37%), Gaps = 2/300 (0%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H + GE V R++ +G HRG E+L E L R+
Sbjct: 185 EIAVGPIHAGVIEPGHFRFSVVGEKVLRLEERLGYAHRGVERLFERADALAGSRLAARIA 244
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + AY +A+E+ L I +P R +R L E R+ +HL ++ D G
Sbjct: 245 GDSTVAFAWAYCMALEQALRIRVPDRALRLRALLLERERVANHLGDLGALGNDAGFAVGL 304
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+E + +R G R PGGV +DI + I CD + +
Sbjct: 305 AHFSRLKEDWLRMQDRIFGHRYLMDAIVPGGVARDIAADDAAAIVAQCDRIEREVRAMQT 364
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + R G + + +G G+ R SG D+R Y L D+
Sbjct: 365 IYDDQSGLQDRFAGTGRLDAQAVAHFGVCGLAARASGQPRDVRADHRLAPYDALRIDVSR 424
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
GD R VR E ES++ IR + L ++ VP RAD + E
Sbjct: 425 DARGDVAARVAVRFAETYESMRAIRALLADLPDDGLAAEIAPGA--TVPGARADAGGACE 482
>gi|323477025|gb|ADX82263.1| nickel-dependent hydrogenase, large subunit [Sulfolobus islandicus
HVE10/4]
Length = 503
Score = 172 bits (437), Expect = 8e-41, Method: Composition-based stats.
Identities = 67/489 (13%), Positives = 132/489 (26%), Gaps = 120/489 (24%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + ++ V L RG E ++ K+ L ++ R+ + + +A
Sbjct: 12 VEGDLDVEVKFKENKVVDAKIVS-RLFRGLELILRGKSPLDSLVITPRVCGICGASHLYA 70
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA-------------- 125
A A++ + E+P +R + S + L + +
Sbjct: 71 SASALDMVFNAEVPRNAIRLRNVMSMAESCQNDLRHTYFMFLIDVVNKKYQEYINFEEVL 130
Query: 126 -------LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWC- 177
+ F +K Y G H + PGGV P V+
Sbjct: 131 KRFSPITGSSYKECFRWSKKYTEVYAIFGGQWPHGSAIIPGGVTSYPLPNEVQKAISILI 190
Query: 178 ----------------DSFPSALNDISDLLTGNRIFKQ----RNVNIGTVKLEDAWGWGF 217
+ F + + DLL +K R V G G G
Sbjct: 191 DIRKNYLENVVLGGPVEQFLNTVKSYKDLLQWVEDYKDGDLSRIVEFGLEANWHKLGHG- 249
Query: 218 SGVMIRGSGAAWDLRKSQPYECY----------------------SELDFDIPIGKHGD- 254
+G+M+ ++ P Y + GD
Sbjct: 250 TGIMLSYGHLPFEEYVGSPSRKYFKPGIFFVKEKEYREFDQNNILEFVTTSYYTYSKGDE 309
Query: 255 -------------------CYDRYLVRMMEMRE----------------SVKIIRQCVNR 279
Y +M S +I +++
Sbjct: 310 IGLHPFEGETNPSILDNSKKYSLTKCFRYKMDGNLLAPEVGALAMLTVSSNPLILDIMDK 369
Query: 280 LLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGE 339
+ ++ I+ M ++ Y + V G+ + VEAP+G
Sbjct: 370 IGPNVLSRVIARLVRVIIY--NELMINELKDYEFGKPTYKKPTEVNEGKGFGLVEAPRGS 427
Query: 340 FGVYLISDGGNKPYRCKIRAPGYAHLQA---------MEFLCKGHQLADVS------AIL 384
G +++ K + ++ P ++ + G +++D++ I+
Sbjct: 428 LGHWIVVK-NGKIFNYQMVTPTQINMGPEDPKGNKSHLSLALIGTEVSDINNPIEVYHIV 486
Query: 385 GSLDIVFGE 393
S D
Sbjct: 487 RSHDPCMVC 495
>gi|114321159|ref|YP_742842.1| nickel-dependent hydrogenase, large subunit [Alkalilimnicola
ehrlichii MLHE-1]
gi|114227553|gb|ABI57352.1| nickel-dependent hydrogenase, large subunit [Alkalilimnicola
ehrlichii MLHE-1]
Length = 482
Score = 172 bits (437), Expect = 8e-41, Method: Composition-based stats.
Identities = 68/471 (14%), Positives = 124/471 (26%), Gaps = 106/471 (22%)
Query: 29 ELDGEIVERVDPHIGLLH---------RGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
++G++ +D G +H RG E+++ + L A+ + R+ + ++Q A
Sbjct: 11 RVEGDLEVTLDVRDGYVHQAWVNSPLYRGFERVLLGREPLDALVFAPRICGICSVSQSVA 70
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL--------- 130
A A+ L G ++P G LIR L + H + M A
Sbjct: 71 AASALADLAGAQMPRNGALIRNLIHAAENLADHFTHFYLFFMPDFAREDYADRTWHSAVQ 130
Query: 131 ------------WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
R + + +G H PGG + + P +
Sbjct: 131 TRFRAVRGQAPAQALPARARFLTLMGLLAGKWPHTLAIHPGGASRAVEPAERLRLLAIVR 190
Query: 179 SFPSALNDISD----------------LLTGNRIFKQRNVNIGTVKLEDAWGWGFSG--- 219
F + L R + G ++L D G
Sbjct: 191 EFRTWLERHLFGDRLECVLALESPAALEAWRARPGPAQGDFAGFLRLADDLDLVSLGRSP 250
Query: 220 ------------------VMIRGSGA---------------AWDLRKSQPYECYSELDFD 246
G AW +P +
Sbjct: 251 GGFLSYGSYPIGDETAFAPGQWVDGQVQPLNTEAIDEDLTSAWLSGPGKPAHPLHGVTEP 310
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL------GKNKVGPVSASDPKIVPPK 300
+ + + + E+ + RQ V+ ++ + +++
Sbjct: 311 VVQKADAYSWCKAPRMGGAVVETGALARQLVDGQPLIRALVAESGGNVRNRVIARLIELA 370
Query: 301 RA--DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
R M+ + SL Y + G EA +G G +L +I
Sbjct: 371 RVPPLMEHWVRSLQPGEPCYADYTLPGEGVGVGLTEAARGSLGHWLTVR-NGMISNYQII 429
Query: 359 APGYAHLQ---------AMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
AP + +E G AD V ++ S D
Sbjct: 430 APTTWNFSPRDHAGVPGPLEQALVGTPAADAGESVAVQHVVRSFDPCMVCT 480
>gi|159905362|ref|YP_001549024.1| nickel-dependent hydrogenase large subunit [Methanococcus
maripaludis C6]
gi|159886855|gb|ABX01792.1| nickel-dependent hydrogenase large subunit [Methanococcus
maripaludis C6]
Length = 418
Score = 172 bits (436), Expect = 8e-41, Method: Composition-based stats.
Identities = 61/400 (15%), Positives = 114/400 (28%), Gaps = 47/400 (11%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD V HI L RG E+ + + + R+ +
Sbjct: 12 LEGHGKVSITLDDAGKPTDVKLHITAL-RGFEQFVIGRPAEEVPRIVPRICGICQTPHHL 70
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A AV+ G E+P +R L + SH L+ A
Sbjct: 71 ASVKAVDAAWGAEVPSAAGKLRELMHLGNMMHSHALHFYYLAAPDFVLGPDSDPAARNII 130
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
A R E G +H PGGV + + E +++ D
Sbjct: 131 GVIGAAPEVAKKAIAMRRVGQAIVETVGGRAIHPVTGVPGGVSKALSEEKRDELLKEIDD 190
Query: 180 FPSALNDISDLLTG-NRIFKQRNVNIGTVKLED-----AWGWGFSGVMIRG---SGAAWD 230
+ + L+ N + +G + F G +R G
Sbjct: 191 MIAFGQEGVALIKALNEKYMDVAKTLGVIDTWYLGLVKDGKHNFYGDTLRFMSPDGKQIT 250
Query: 231 LRKSQPY----------ECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVK-----IIRQ 275
K Y Y + ++ +G Y + M+ + +S+ R+
Sbjct: 251 DFKPSEYLDNIGEHVVEHNYVKYPYNKKVGYPEGLYRVGPLGMINVCDSMPTPLAEEARK 310
Query: 276 CVNRLLGKNKVGPVSASDPKIVPP--KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAV 333
GK ++ + +++ +K +E G A+
Sbjct: 311 DFADTFGKPANQSLAYNHARLIELLGSCERVKELLEDPEITSTDIKAEVEPKAGNGVGAI 370
Query: 334 EAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK 373
AP+G +D + + ++ ME +
Sbjct: 371 YAPRGTLIHNYETDDKGIVVKANMIVATTHNVPTMEKAIQ 410
>gi|126178957|ref|YP_001046922.1| nickel-dependent hydrogenase, large subunit [Methanoculleus
marisnigri JR1]
gi|125861751|gb|ABN56940.1| F420-non-reducing hydrogenase subunit A [Methanoculleus marisnigri
JR1]
Length = 455
Score = 172 bits (436), Expect = 8e-41, Method: Composition-based stats.
Identities = 69/430 (16%), Positives = 128/430 (29%), Gaps = 58/430 (13%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G + + L+ V+ + L RG EK + + +A R+ + P
Sbjct: 12 IEGHAGVRIYLNDQGQVDSAHFQVVEL-RGFEKFLIGASIGEAPRITPRICGICPSAHHL 70
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A A A +++ G+E P G+ +R L S I SH L+ A
Sbjct: 71 AAAKATDQIFGVEPPATGKKLRELLSIGQFIHSHALHFFMLAAPDFILGHDAPAETRNVI 130
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
+ R+ E G +H + PGG+ + ++ +
Sbjct: 131 GLARHSPDLAKKAIAVRKFGQRLTEAVGGKPIHPSNALPGGMSTALTEGKRAELATMANE 190
Query: 180 FPSALNDISDL---LTGNRIFKQRNVNIGTVKLEDAWGWGFS-----------GVMIRGS 225
+ DL L + V G + + + + G + S
Sbjct: 191 ALGIAREGWDLARGLLDGVDMEFGAVTTGFLGMANNGVYSTYEGPAMMLGPDGGQLGSFS 250
Query: 226 GAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNK 285
G + + E +S L F G GD Y + + + + + + +
Sbjct: 251 GQDYTNFIEEYSEDWSYLKFARFKG--GDYYRVGPLARLNIVQKMGTEHADAALAEYRER 308
Query: 286 VGPVSASDPKIVPPKRADMKRSME---SLIHHFKLYTEGYHVPVG-----EVYAAVEAPK 337
G V+ + + + S E L+ + PVG +EAP+
Sbjct: 309 FGTVTQATLAYNLARYIEFIASCERAVQLLSDPGITGSDIRTPVGAVVNRRGVGIIEAPR 368
Query: 338 GEFGVYLISDGGNKPYRCKIRAPGYAHLQAME--------FLCKGHQLAD-----VSAIL 384
G D RC + + M+ + + L D + I+
Sbjct: 369 GTLIHDYSVDENGIIERCNLIVATCQNNYGMDRGVEDMARRVVENGALTDGAANRIEMII 428
Query: 385 GSLDIVFGEV 394
+ D
Sbjct: 429 RAYDPCISCA 438
>gi|240102126|ref|YP_002958434.1| Coenzyme F420 hydrogenase subunit alpha (frhA) [Thermococcus
gammatolerans EJ3]
gi|239909679|gb|ACS32570.1| Coenzyme F420 hydrogenase subunit alpha (frhA) [Thermococcus
gammatolerans EJ3]
Length = 393
Score = 172 bits (436), Expect = 9e-41, Method: Composition-based stats.
Identities = 62/378 (16%), Positives = 119/378 (31%), Gaps = 13/378 (3%)
Query: 22 GVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYA 81
G +LIL + +V+ RG EK++ K L AV R+ + + A +
Sbjct: 17 GEAKLILYEEDGVVQDALFIATAPVRGFEKMVVGKNPLFAVEAVMRICGLCHASHGIAAS 76
Query: 82 LAVEKLLGIEIPIRGQLIRVLYSEIGRILSH----LLNVTTQAMDVGALTPPLWGFEERE 137
A+E +G+ P G+L+R I R SH L+ + +
Sbjct: 77 EAIEHAIGVTPPRNGRLMREALGLINRAQSHALLFLMVAGDLIKEEKRNDVLFKLMDFHA 136
Query: 138 KLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIF 197
K+ + + G+ H GG+ + ++ ++ +LL I
Sbjct: 137 KISDYLLKLGGAATHPPNLTIGGMLSVPKWSVFNNLKARFKDLTASWEAAEELLIDEDIQ 196
Query: 198 KQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYD 257
+ + K + R WD S PY Y +
Sbjct: 197 TEIADELREAKRPFKYLASGFFYGDRY-NIEWDKVSSVPY--YEFRKEEAARESTTLVSF 253
Query: 258 RYLVRMMEMRESVKI-IRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFK 316
++ + I R+ + L + + + I + ++ +
Sbjct: 254 YDGEKVETGPRARMITYREFRDESLYGLHLARIEDTRLAI-----QRLGEILDEIRIEEP 308
Query: 317 LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQ 376
T G+ EAP+G Y+ + + +I P ++ ME + KG
Sbjct: 309 FRTGDITFRPGKGVGVYEAPRGTLIHYVELGEEGRVLKSRIVVPTMFNIPVMEEMAKGLS 368
Query: 377 LADVSAILGSLDIVFGEV 394
+ A++ D
Sbjct: 369 VKAAEAVMRLYDPCIPCT 386
>gi|41018388|sp|Q00404|VHCA_METVO RecName: Full=F420-non-reducing hydrogenase vhc subunit A
gi|44794|emb|CAA43506.1| vhcA [Methanococcus voltae PS]
Length = 474
Score = 172 bits (436), Expect = 9e-41, Method: Composition-based stats.
Identities = 58/439 (13%), Positives = 125/439 (28%), Gaps = 65/439 (14%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ L D +++V+ H+ + RG EK +E + A + R+ + ++
Sbjct: 12 VEGHGKVTLSFDDSGKLDKVNFHVVEV-RGFEKFLEGRYIEDAPIFTPRICGICQVSHHL 70
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV--------------- 123
A A AV+ + G++IP ++R L + + SH L+ A
Sbjct: 71 ASAKAVDNVFGVKIPETANMLRNLIHQASNVHSHALHFGMLASPDLMFPTTDDALKRNLL 130
Query: 124 ----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
+ R+ ++ G +H GG + + E +++ D+
Sbjct: 131 GVAGENMDMIKDSIAMRKVGQTIVQKVGGRAIHPVTAIVGGQSKPLTEEERDELLTLSDN 190
Query: 180 FPSALNDISDL---LTGNRIFKQRN-------VNIGTVKLEDAWGWGFSGVMIRGSGAAW 229
++ + N K ++G V + + ++ G
Sbjct: 191 LVETAERTLNVGKEMVENLKEKDLMNLGYFESYHMGLVNNGAQDIYEGNIRVVNSEGKIE 250
Query: 230 DLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIR-QCVNRLL------- 281
Y Y + + R +++
Sbjct: 251 YEFDPAEYANYITEGVRPYSYLKFLALLKRRGEGKGAYRVNTLSRLNVCDKMPTPIAQKY 310
Query: 282 --------GKNKVGPVSASDPKIVPP--KRADMKRSMESLIHHFKLYTEGYHVPV--GEV 329
GK P+ +++ +++ +E GE
Sbjct: 311 YEEFVKTYGKPAHQPMLFHYARLIELLSSSELIRKFLEDDKIVDTDVRAEVDPKNITGEG 370
Query: 330 YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM--------------EFLCKGH 375
VEAP+G + +D + + AM + K H
Sbjct: 371 VGCVEAPRGTLIHHFKTDDRGIINDTNLVVATVQNNPAMDIGVQKVAEKYIKTPEVAKPH 430
Query: 376 QLADVSAILGSLDIVFGEV 394
L + ++ + D
Sbjct: 431 ILNHMEMVIRAYDPCLSCA 449
>gi|261403599|ref|YP_003247823.1| nickel-dependent hydrogenase large subunit [Methanocaldococcus
vulcanius M7]
gi|261370592|gb|ACX73341.1| nickel-dependent hydrogenase large subunit [Methanocaldococcus
vulcanius M7]
Length = 418
Score = 172 bits (436), Expect = 1e-40, Method: Composition-based stats.
Identities = 56/400 (14%), Positives = 106/400 (26%), Gaps = 47/400 (11%)
Query: 20 AHGVLRLILELD-GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD + V HI L RG E+ + + + R+ +
Sbjct: 12 LEGHGKVTITLDEDGKPKDVKLHITAL-RGFEQFVIGRPAEEVPRIVPRICGICQTAHHL 70
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A A++ G+EIP + +R L I SH L+ A
Sbjct: 71 ASVKAIDSAWGVEIPEVAKKLRELMLVGNMIHSHALHFYFLAAPDFVLGVDADPAIRNVV 130
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
A R+ E G +H PGG + + E + + D
Sbjct: 131 GVIDKAPEVAKQAIALRKFGQSIVEAVGGKAIHPVTGIPGGQSKPLTEEERDALLKEVDQ 190
Query: 180 FPSALNDISDLLTG-NRIFKQRNVNIGTVKLED--------AWGWGFSGVMIRGSGA--- 227
+ +L+ N F + +G + + + + G
Sbjct: 191 MIEYGKNGVELIKQINEKFMDQIKTLGVIDTYYLGLVKDGKHNFYDDTLRFLSPDGKEKV 250
Query: 228 --------AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRES----VKIIRQ 275
+ PY + G L + E + R+
Sbjct: 251 EFKPEEYLDYIGEYVVPYNYVKHPYYKKVGYPEGVYRVGPLAMLNVCDEMETPLAEEYRK 310
Query: 276 CVNRLLGKNKVGPVSASDPKIVPP--KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAV 333
+ G ++ +++ K +E G V
Sbjct: 311 EFLEIFGFPANQSLAYHHARLIELLSACERAKTLLEDNSITSDDIKTDVEPKAGNGVGVV 370
Query: 334 EAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK 373
AP+G +D + + ++ ME +
Sbjct: 371 YAPRGVLIHNYETDDNGIVIKANMIVATTHNVPTMEKAIQ 410
>gi|291300953|ref|YP_003512231.1| nickel-dependent hydrogenase large subunit [Stackebrandtia
nassauensis DSM 44728]
gi|290570173|gb|ADD43138.1| nickel-dependent hydrogenase large subunit [Stackebrandtia
nassauensis DSM 44728]
Length = 432
Score = 172 bits (436), Expect = 1e-40, Method: Composition-based stats.
Identities = 58/403 (14%), Positives = 107/403 (26%), Gaps = 32/403 (7%)
Query: 21 HGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAY 80
G +R+ + G+ V V I R E L+ + + R+ + P+ + +
Sbjct: 20 EGAMRVRVT--GDTVTEVQLDIYEPPRFFEALLRGRGHTEPPDITSRICGICPVAYQMSA 77
Query: 81 ALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA------------LTP 128
A+E GI + Q +R L I SH L++
Sbjct: 78 CAAIEDACGITVDSGIQDLRRLLYCGEWISSHALHIYLLHAPDFLGYSGAVDMARDQRPV 137
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
G ++ + ER G +H R GG H+ ++ + D
Sbjct: 138 VERGLRLKQAGNMIMERLGGRAIHPVNVRIGGFHRLPTRTELDSLVAPLTRALDDALDTV 197
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
+ G + + ++ + G + S ++ LR+ + ++
Sbjct: 198 TMAAGFDFPEYECRHEWLALVDPRQRYPIDGGVPHTSQGSFPLREYTSHVVEHQVSHSTA 257
Query: 249 IGKHGDCYDRYLVRM--MEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ R L ++ I+ +
Sbjct: 258 LHARLADGSRPLTGPLARYALNHDRLSPLARQTARSAGLDSVCRNPFRSIIVRAVETVYA 317
Query: 307 SMESLIHHFKL-----YTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
E+L Y A EAP+G D I P
Sbjct: 318 VEEALRIIASYEPPPRPAVPVPPVAAIGYGATEAPRGVLFHSYTLDDSGTVLAANIVPPT 377
Query: 362 YAHLQAMEFLCKG-----HQLAD------VSAILGSLDIVFGE 393
+ AME +G L D + + D
Sbjct: 378 AQNQTAMEHDLRGFVQDHLTLDDHSLTHACEQAIRNYDPCISC 420
>gi|256810210|ref|YP_003127579.1| nickel-dependent hydrogenase large subunit [Methanocaldococcus
fervens AG86]
gi|256793410|gb|ACV24079.1| nickel-dependent hydrogenase large subunit [Methanocaldococcus
fervens AG86]
Length = 418
Score = 172 bits (436), Expect = 1e-40, Method: Composition-based stats.
Identities = 59/400 (14%), Positives = 114/400 (28%), Gaps = 47/400 (11%)
Query: 20 AHGVLRLILELD-GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD + V HI L RG E+ + + + R+ +
Sbjct: 12 LEGHGKVTITLDENGKPKDVKLHITAL-RGFEQFVVGRPAEEVPRIVPRICGICQTAHHL 70
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A AV+ G+EIP + +R L I SH L+ A
Sbjct: 71 ASVKAVDAAWGVEIPEPAKKLRELMHIGNMIHSHALHFYFLAAPDFVLGVDADPAIRNVI 130
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
A R+ E G +H PGG + + E +++ D
Sbjct: 131 GVIDKAPEAAKQAIALRKYGQKIVEAIGGKAIHPVTGIPGGQAKQLKEEERDELLKDADQ 190
Query: 180 FPSALNDISDLLTG-NRIFKQRNVNIGTVKLED--------AWGWGFSGVMIRGSGAAWD 230
+ +L+ N + ++ +G + + + + G
Sbjct: 191 MIEYAKNGIELIKQINEQYMEQIKTLGVIDTWYLGLVKGGKHNFYDDTLRFLSPDGKEKV 250
Query: 231 LRKSQPY----------ECYSELDFDIPIGKHGDCYDRYLVRMMEMRESV-----KIIRQ 275
K Y Y + F G Y + M+ + +S+ + R+
Sbjct: 251 DFKPAEYLDYIGEHVVSHNYVKYPFYKKAGYPDGIYRVGPLAMLNVCDSMETPLAEEYRK 310
Query: 276 CVNRLLGKNKVGPVSASDPKIVP--PKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAV 333
+ G ++ +++ K +E G V
Sbjct: 311 EFFDIFGFPANQSLAYHHARLIELVEACEKAKILLEDNDITSDDIKAEVEPKAGNGVGVV 370
Query: 334 EAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK 373
AP+G +D + + ++ ME +
Sbjct: 371 YAPRGVLIHNYETDENGIVVKANMIVATTHNVPTMEKAIQ 410
>gi|320353889|ref|YP_004195228.1| nickel-dependent hydrogenase large subunit [Desulfobulbus
propionicus DSM 2032]
gi|320122391|gb|ADW17937.1| nickel-dependent hydrogenase large subunit [Desulfobulbus
propionicus DSM 2032]
Length = 502
Score = 172 bits (436), Expect = 1e-40, Method: Composition-based stats.
Identities = 54/474 (11%), Positives = 120/474 (25%), Gaps = 102/474 (21%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + + ++ +V IG ++RG E ++ ++ L + R+ + + A
Sbjct: 12 VEGDLEVKVAIEDGMVTDA-WMIGTMYRGIETMLIGRSSLDGLVITPRICGICSTSHLLA 70
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKL 139
A+A+E + + G L+R + + + ++ T +E +
Sbjct: 71 AAMALEDITRTAVSRNGLLVRRIALGAETLQNDFRHLFLMFAADFTATGYGRHPLYQEMI 130
Query: 140 MVF---------------------YERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
+ G H+++ PGGV +
Sbjct: 131 QRYRPYQGSTVVATILATKKLPEIIAILGGQWPHSSFIVPGGVTSQPSAADLRQCRLLLA 190
Query: 179 SFPSALN------------------DISDLLTGNRIFKQRNVNIGTVKLED--------A 212
F + D L + +
Sbjct: 191 EFRRWYEQEVLGCSLERFAAVHNRVQLEDWLEERPEHRASELGFFLRSAFPLALEHLGGW 250
Query: 213 WGWGFSGVMIRGSGAA-------------------WDLRKSQPYECYSELD--------- 244
G +G + + + Y Y + D
Sbjct: 251 HGSFITGPPLPVDNPPSESMAGHVLHGDALNVLDQRHIAEEVRYAHYQDSDSGGHPSESE 310
Query: 245 --FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL------GKNKVGPVSASDPKI 296
+ + E+ + R + ++ +I
Sbjct: 311 THPKESAASGTYSWCKAPRYNGSPAETGALAEALTRRDPLLTDLVAGHGTSALARELARI 370
Query: 297 VPPKRA--DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYR 354
V R M+R + ++ Y G ++AP+G G ++ +G
Sbjct: 371 VRAGRLLMTMERDLRAIDPAEPFYQPTGVPANGSGLGLIQAPRGLLGHWVQLNG-GYIDH 429
Query: 355 CKIRAPGYAHLQ---------AMEFLCKGHQLAD------VSAILGSLDIVFGE 393
+I P + +E G + + V ++ S D+
Sbjct: 430 YQIVPPTTWNASPRDDRGVRGPIEEALVGTPVHNPEDPVEVGHVVRSFDLCMVC 483
>gi|225175368|ref|ZP_03729363.1| nickel-dependent hydrogenase large subunit [Dethiobacter
alkaliphilus AHT 1]
gi|225169120|gb|EEG77919.1| nickel-dependent hydrogenase large subunit [Dethiobacter
alkaliphilus AHT 1]
Length = 455
Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 51/437 (11%), Positives = 109/437 (24%), Gaps = 70/437 (16%)
Query: 26 LILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVE 85
+ + ++ V + RG E +++ + A R+ + A A+A+E
Sbjct: 19 VEVSIENGAVVDARCGVDF-FRGFELILKGRDPRDAGYLSQRICGICSAAHGTAAAMALE 77
Query: 86 KLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA-------------------- 125
I P G L+R L + H + +
Sbjct: 78 DAAQIRPPRNGALLRNLILGADFMQDHFRHFYIYGLPDYVEGPDMGPFAPGYTKGFRLSK 137
Query: 126 ------LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
+ + +G H GG +++ D
Sbjct: 138 KKNDLLMKHYQQALDIARLNHEMVTLLAGKAPHNQGLLAGGCTVPPAADILADFQSKLKK 197
Query: 180 FPSALNDIS--DLLTGNRIFKQRNV-----------NIGTVKLEDAWGWGFSGVMIRGSG 226
+ + D+ D++ + + T + + SG +I G
Sbjct: 198 VRAFIKDVMMTDMMILAETYSDYYHIGTRAADFLEFGLFTHPENNQKRYFPSGALIHGQN 257
Query: 227 AA-------------WDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKII 273
W ++ + + + E +
Sbjct: 258 KEVNSNLIAEHLRNSWYDEEAGAQHPAQGKTIPNREKSGAYSWVKAPRYDGKSVEGGPLA 317
Query: 274 RQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP-VGEVYAA 332
R + + + K AD+ + + K + + +P E
Sbjct: 318 RLWIKGDYQRGVSVMDRNMARVLETEKIADLMVQWLAELEPGKPVFKSFKMPSKAEGIGL 377
Query: 333 VEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLAD---- 379
A +G G +L + +I P + L +E G + D
Sbjct: 378 TGAMRGPLGHWLKI-EKGRIAHYQIITPTAWNFSPRDASGQLGPVEEALIGTTIEDEKEP 436
Query: 380 --VSAILGSLDIVFGEV 394
+ ++ S DI
Sbjct: 437 VEIGRVIRSFDICSACA 453
>gi|94265596|ref|ZP_01289340.1| Nickel-dependent hydrogenase, large subunit [delta proteobacterium
MLMS-1]
gi|93453875|gb|EAT04233.1| Nickel-dependent hydrogenase, large subunit [delta proteobacterium
MLMS-1]
Length = 504
Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 71/505 (14%), Positives = 116/505 (22%), Gaps = 122/505 (24%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
I+ GP G L + ++ +V G + RG E L+ + L + R+
Sbjct: 1 MKIDIGPVT-RIEGHLNVQTTVENGVVVDARCE-GEMFRGFEILLRGRDPLDSQQITQRI 58
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILS---HLLNVTTQA----- 120
V P A + A E + +P G+++ L + H +
Sbjct: 59 CGVCPYAHAIASSYAQEDAYRLSVPPNGRILHNLIQGANHLYDHLLHFYQLCALDYVDIT 118
Query: 121 -----------------------------------------------MDVGALTPPLWGF 133
++GA+ L
Sbjct: 119 AVLEYTGRDPELSKVRDWVKAEVDSGKRYPAAPFLPRLDGKYLDNRDANLGAIKNYLSAM 178
Query: 134 EEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS--ALNDISDLL 191
+K G HA PGG Q+ +L+ L I D+L
Sbjct: 179 NMEKKANQAAAIFGGRFPHATSIFPGGCTQNASIDLILAYQSLIREVRDFIHLKYIPDVL 238
Query: 192 TGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGS------------------GAAWDLRK 233
F + + ++G G G
Sbjct: 239 AVAGAFPEYWEIGQSKGGFLSYGHMPLGPARNSERLLAPGVLLGDQLSAVELGKIRQDVN 298
Query: 234 SQPYECYSELDFDIPI-------GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKV 286
Y S L G + +M E R V+ G N
Sbjct: 299 HALYSSASNLTVRDAAIVPQPDKGGEAYSWIMAPRYDGQMVEVGPAARVMVDYAQGHNPE 358
Query: 287 GP----------------------VSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHV 324
S + + E L E
Sbjct: 359 IKKLVERFAGHANISANQLNSVLGRHLSRAILAAVIADFVLAESERLDPAAPTMAELDPP 418
Query: 325 PVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGH 375
GE + EA +G Y+ K + + P + AME G
Sbjct: 419 ASGEGFGITEASRGALLHYIRI-ENYKIAKYECVVPTTWNASPRDDQGTPGAMESALIGT 477
Query: 376 QLADVS------AILGSLDIVFGEV 394
++ + I+ S D
Sbjct: 478 RVQNPEEQIESKRIVRSFDPCLACA 502
>gi|291334206|gb|ADD93873.1| hypothetical protein [uncultured marine bacterium
MedDCM-OCT-S08-C1340]
Length = 129
Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 86/131 (65%), Positives = 102/131 (77%), Gaps = 2/131 (1%)
Query: 266 MRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP 325
MRES KII+QC L + G +S+ KI PP R DMK +MESLIHHFKL++EGY VP
Sbjct: 1 MRESAKIIQQCCEWLEKDD--GQHISSNSKIAPPDRDDMKDNMESLIHHFKLFSEGYCVP 58
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILG 385
GEVY+AVEAPKGEFGVY+ISDG NKPYR KIRAPG+ HL A+ + KGH L+DV AI+G
Sbjct: 59 EGEVYSAVEAPKGEFGVYMISDGANKPYRLKIRAPGFPHLAALNEMSKGHMLSDVVAIIG 118
Query: 386 SLDIVFGEVDR 396
+ DIVFGE+DR
Sbjct: 119 TQDIVFGEIDR 129
>gi|332702529|ref|ZP_08422617.1| Hydrogen dehydrogenase [Desulfovibrio africanus str. Walvis Bay]
gi|332552678|gb|EGJ49722.1| Hydrogen dehydrogenase [Desulfovibrio africanus str. Walvis Bay]
Length = 488
Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 58/454 (12%), Positives = 122/454 (26%), Gaps = 71/454 (15%)
Query: 10 TINFGPQHPAAHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
T+N P G + + LD V ++ L RG EK + + + +R+
Sbjct: 10 TLNIAPVT-RIEGHAGIEIMLDDAGNVADARLNVMSL-RGFEKFVVGRPIEEVPRIVNRI 67
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG---- 124
+ P N A AV+ LG+ P G+ +R + I +L+ A
Sbjct: 68 CGICPWNHHLASMKAVDGCLGLTPPPTGRKLREFCQMLAYIPDKILHFYFLAAPDFVLGP 127
Query: 125 ---------------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL 169
A R K + E+ +G +H GG + + E
Sbjct: 128 DADVAVRNVVGIVGAAPELAKQVVHMRYKTQMALEKFAGKVIHPMAAVAGGFSKPMLEEE 187
Query: 170 VEDIGCWCDSFPSALNDISDLLTGN--RIFKQRNVNIGTVKLEDAWGWGF-SGVMIRGSG 226
+++ N + + +G + +G + G
Sbjct: 188 RKELLEVIKEAKEFGLFTIKFARENVFPKYLEAVKTVGVFESGYIGTVVPETGALELYDG 247
Query: 227 AAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIR------------ 274
+ + Y+ + ++ I +H + + ++ +K+
Sbjct: 248 ELRLMDRDGSYDQFKYSEYGNYIAEHTEDWSYLKFPYIKKHGGIKLDETDAKGVYRSNCL 307
Query: 275 ------------------QCVNRLLGKNKVGPVSASDPKIVPP--KRADMKRSMESL-IH 313
+ + G+ + +++ + + I
Sbjct: 308 ARINVCDQMRTPLAQKELEIFRKEFGRPAHLTLLYHWARLIELVQCCERAEELLNDPEIT 367
Query: 314 HFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME---- 369
+ + GE VEAP+G + SD + + M
Sbjct: 368 GRDIRAKNIVPKAGEGVGCVEAPRGTLIHHYKSDENGMCTFANLIVGTTHNNAGMNLSVK 427
Query: 370 ---FLCKGH------QLADVSAILGSLDIVFGEV 394
+ L V + + D
Sbjct: 428 QAAKALIKNGKYDQGILNTVELAVRAYDPUMSCA 461
>gi|167828122|ref|ZP_02459593.1| putative hydrogenase subunit [Burkholderia pseudomallei 9]
Length = 559
Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 69/282 (24%), Positives = 106/282 (37%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H + GE V R++ +G HRG E+L E L R+
Sbjct: 192 EIAVGPIHAGVIEPGHFRFSVVGEKVLRLEERLGYAHRGVERLFERADALAGSRLAARIA 251
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + AY +A+E+ L I +P R +R L E R+ +HL ++ D G
Sbjct: 252 GDSTVAFAWAYCMALEQALRIRVPDRALRLRALLLERERVANHLGDLGALGNDAGFAVGL 311
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+E + +R G R PGGV +DI + I CD + +
Sbjct: 312 AHFSRLKEDWLRMQDRIFGHRYLMDAIVPGGVARDIAADDAAAIVAQCDRIEREVRAMQT 371
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + R G + + +G G+ R SG D+R Y L D+
Sbjct: 372 IYDDQSGLQDRFAGTGRLDAQAVAHFGVCGLAARASGQPRDVRADHRLAPYDALRIDVSR 431
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSA 291
GD R VR E ES++ IR + L ++
Sbjct: 432 DARGDVAARVAVRFAETYESMRAIRALLADLPDDGLAAEIAP 473
>gi|288818316|ref|YP_003432664.1| Ni,Fe-hydrogenase large subunit [Hydrogenobacter thermophilus TK-6]
gi|152061264|dbj|BAF73683.1| Ni,Fe-hydrogenase large subunit [Hydrogenobacter thermophilus]
gi|288787716|dbj|BAI69463.1| Ni,Fe-hydrogenase large subunit [Hydrogenobacter thermophilus TK-6]
gi|308751913|gb|ADO45396.1| nickel-dependent hydrogenase large subunit [Hydrogenobacter
thermophilus TK-6]
Length = 438
Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 62/429 (14%), Positives = 122/429 (28%), Gaps = 57/429 (13%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +L L + + I RG E+++E + F+ A+ R+ + A
Sbjct: 11 VEGTAQLELVWENGRIRDARVRIPSS-RGIERVLEGRPFMDALVITPRVCGICGHAHLMA 69
Query: 80 YALAVEKLLG-IEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD----VGALTPPLWGFE 134
A+E +G + + + +L+R + + I +H+ M +G F
Sbjct: 70 CVKALEDAIGHVRLSQKAKLVRDITLMVEMIQNHIKWFYLFVMPDFIRLGEKLDEFEPFR 129
Query: 135 ERE---------KLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ + + G H++Y PGG+ + V
Sbjct: 130 GKRWKEAISVASEAIKVIAIFGGQWPHSSYAVPGGITSNFTSTDVSKALALVSRVEGFFL 189
Query: 186 DI-----SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGS-GAAWDLRKSQPYEC 239
+ + R G VKL + + + S G + P
Sbjct: 190 ESLVGMPVEAFLSLRKHGSWEGLKGDVKLFIDLCFKYGLERVGMSYGRLLTGGEVFPCIT 249
Query: 240 YSELDFDIPIGK-----------HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGP 288
+ + + + E+ + RQ ++ ++
Sbjct: 250 PGHFTGEKKLCSLNISKIREADGSPYSGAKRVRYNGMPYETGPLARQFLSGNPFVKRLHK 309
Query: 289 VSASDPKIVPPKR--------ADMKRSMESLIHHFKLYTE--GYHVPV---GEVYAAVEA 335
+ + R + +K + SL K + + P GE VEA
Sbjct: 310 MYGDSYMVRVLSRLLEVWELTSTVKEKLTSLYSFIKEPSCQIPFQKPERITGEGVGIVEA 369
Query: 336 PKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA--------MEFLCKG--HQLADVSAILG 385
+G +S R I P +L E G + + +L
Sbjct: 370 ARGTLIHR-VSIEKGVITRYHIITPSVWNLGPRCEKYLGVAEKAMIGLENPIH-AEMVLR 427
Query: 386 SLDIVFGEV 394
S D+
Sbjct: 428 SFDVCSVCT 436
>gi|307822293|ref|ZP_07652525.1| Cytochrome-c3 hydrogenase [Methylobacter tundripaludum SV96]
gi|307736859|gb|EFO07704.1| Cytochrome-c3 hydrogenase [Methylobacter tundripaludum SV96]
Length = 512
Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats.
Identities = 63/488 (12%), Positives = 120/488 (24%), Gaps = 115/488 (23%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L LEL+ V IG L+RG E+++ ++ ++ R+ + Q +A
Sbjct: 13 VEGDLDFQLELEDNKVVDARC-IGSLYRGFEQILMSRKPKDSLVITPRICGICGTAQLNA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLW-------- 131
LA+E + I +P IR L + S L + +
Sbjct: 72 AVLALEHIGRIPVPPTAIRIRNLCLMAETVQSDLRQSFMFFTADFCHSKYVDRPFYEKAR 131
Query: 132 -------------GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
E ++ G H++Y PGGV + D +
Sbjct: 132 AAFLPFKGSVHRGALEHSRHIVEIIALFGGQWPHSSYMLPGGVTTPASSRHIIDSLSILN 191
Query: 179 SFPSAL------------------NDISDLLTGNRIFKQRNVNIGTVKLEDA-WGWGFSG 219
++ LT + + T+ D G
Sbjct: 192 KLTRWFEQAIIGTDLDAWLAIQSADEFFTWLTAKDAHADSAIGLFTLMSRDIGLHNTGFG 251
Query: 220 VMIRGSGAAWD-----------------------------------------LRKSQPYE 238
S A+D QPY+
Sbjct: 252 TPHMISYGAYDDPDDAGTFPPHRKHLFRAGFLNGDTGDIEPFEQAEITEHVRYSWFQPYQ 311
Query: 239 CYSEL-----DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL--------GKNK 285
D + + ++ ++ + ++
Sbjct: 312 GGRHPFQGQTIPDYQPHSDRYTWCKAPRYQNKVVQTGPLADALIDGEPLIRSLYQAEGGN 371
Query: 286 VGPVSASDPKIVPPKRADMKRSMESLIHHF----KLYTEGYHVPVGEVYAAVEAPKGEFG 341
+ M+ ++ L + + +P GE + V A +G G
Sbjct: 372 AWLRQFARLHRTARLLHKMRETLRELAAQPNAPHMISPDEKEIPDGEGFGLVTAARGALG 431
Query: 342 VYLISDGGNKPYRCKIRAPGYAHLQA---------MEFLCKGHQLAD------VSAILGS 386
++ R ++ P + E G + D + I+ S
Sbjct: 432 HWVQIT-DGVISRYQVVTPTAWNASPKDSEGRHGHWESSLIGLTVDDPDDPVEIGHIIRS 490
Query: 387 LDIVFGEV 394
D
Sbjct: 491 HDPCLVCT 498
>gi|261350143|ref|ZP_05975560.1| NAD-reducing hydrogenase, beta subunit [Methanobrevibacter smithii
DSM 2374]
gi|288860929|gb|EFC93227.1| NAD-reducing hydrogenase, beta subunit [Methanobrevibacter smithii
DSM 2374]
Length = 474
Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats.
Identities = 64/439 (14%), Positives = 123/439 (28%), Gaps = 66/439 (15%)
Query: 20 AHGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ ++LD + V H+ + RG EK ++ + + R+ + +
Sbjct: 12 IEGHAKITVQLDDDGNVVDTRLHV-MEFRGFEKFLQGRPVEEVARIVPRICGICDVQHHL 70
Query: 79 AYALAVEKLLGIE---IPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV------------ 123
A A AV+++ G E I +R + + + SH L+ A
Sbjct: 71 AAAKAVDQIFGFEDEKILPTAYKMREIMNWGSFMHSHALHFYFLAAPDLIIPDGTRKTRN 130
Query: 124 ------GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWC 177
L E R + + G +H PGG+ ++ E +D+
Sbjct: 131 VFQIIKDQPEIALQAIELRRNGLEIVRKIGGRPIHPTSSTPGGISTELDDETQKDLLQRA 190
Query: 178 DSFPSALNDISDLLTG-NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSG-AAWDLRKSQ 235
DL ++G G GV +G
Sbjct: 191 QRNVELAQATLDLAKPIFEEKIDLINSLGYFGDTRHCGLVNDGVWDVYNGDVRIKDVDGS 250
Query: 236 PYECYSELDFDIPIGKHGDCYDRYLVRM----------------------MEMRESVKII 273
Y Y L++ + +H Y +M ++ +
Sbjct: 251 IYTEYKNLEYKDVVAEHVKPYSWLKFPYIKELGYPEGIYRVAPLSRINVADKMPDAAPLA 310
Query: 274 RQCVNRLLGKNK--VGPVSASDPKIVPPKRADMKRSMESLIHH--FKLYTEGYHVPVGEV 329
+ K P+ +++ A + + ++L + E GE
Sbjct: 311 QAAFEEFHDKFGYAQAPLLFHWARLIE-LLASAECAADALDQDLSGPKFPEELERTAGEG 369
Query: 330 YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLC---------KGHQLAD- 379
VEA +G D I + AME G ++ D
Sbjct: 370 AGIVEAARGTLIHNYACDDNGLVTEANIVVATIQNNPAMEMGIQQVAKDYIKPGVEVDDK 429
Query: 380 ----VSAILGSLDIVFGEV 394
+ ++ + D
Sbjct: 430 IFNLMEMVIRAYDPCLSCA 448
>gi|149204145|ref|ZP_01881113.1| hydrogenase large subunit [Roseovarius sp. TM1035]
gi|149142587|gb|EDM30632.1| hydrogenase large subunit [Roseovarius sp. TM1035]
Length = 476
Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats.
Identities = 68/473 (14%), Positives = 122/473 (25%), Gaps = 97/473 (20%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
GP + G L + L++ V + + RG E+++ K + A+ R+ +
Sbjct: 8 VGPFN-RVEGDLEIRLDVAEGRVRSAQVNSP-MFRGFERMLLGKGAMDALTITPRICGIC 65
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP--- 129
++Q A A A+ + G+ G+ + L + H+ + M A +
Sbjct: 66 SISQSAAAARALAQAAGVVPAPEGEKVAALLHMVENQADHMTHFNLFFMPDFARSVYAGR 125
Query: 130 ------------------LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
E R +L+ G H +PGGV +
Sbjct: 126 RWHARTVARFTAMQGSALHGALEARARLLHIVGLLGGKWPHTLAIQPGGVTRAPSLRDKL 185
Query: 172 DIGCWCDSFPSALN-------------------------DISDLLTGNRIFKQ------- 199
+ +F + L L
Sbjct: 186 RMQASLRAFRAYLEAEMFGAPLEAFIALESVAALEAWDTGDVGLFLEIAADLDLAGMGQG 245
Query: 200 ---------RNVNIGTVKLEDAWGWGFSGVMIRG------SGAAWDLRKSQPYECYSELD 244
G V W G GV+ S A P + D
Sbjct: 246 SGRYLSYGAYPSGEGPVFARGIWAGGALGVLQTAQITEDLSHAWMLGEAVHPEAGQTVPD 305
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD- 303
+ G + + E+ + RQ V+ + +IV
Sbjct: 306 --EAMRDPGYSWCKAPRLGGLGYETGALARQVVDGHPLARAMVSEGGVRARIVGRLLEIA 363
Query: 304 -----MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
M+ + + + + G VEA +G G + + +I
Sbjct: 364 RTQVGMEERLAGIDPAARFMADWAPPRDGVGEGLVEAARGALGHWCRI-EKGRIASWQII 422
Query: 359 APGYAHLQ---------AMEFLCKG--------HQLADVSAILGSLDIVFGEV 394
AP + +E G +A V I+ S D
Sbjct: 423 APTTWNFSPRDAGGVPGPLEAALVGAEVQPGEETPIA-VQHIVRSFDPCMVCT 474
>gi|229087786|ref|ZP_04219907.1| NADH dehydrogenase I subunit D [Bacillus cereus Rock3-44]
gi|228695525|gb|EEL48389.1| NADH dehydrogenase I subunit D [Bacillus cereus Rock3-44]
Length = 189
Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats.
Identities = 83/216 (38%), Positives = 112/216 (51%), Gaps = 28/216 (12%)
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
L DL++GN IF R +G EDA + SG +R +G WDLRK +PY
Sbjct: 1 MREQLKGYHDLVSGNEIFLNRVKGVGIYSAEDALSYSLSGANLRCTGVKWDLRKDEPYSI 60
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
Y DFD+P+G GD +DRY+ RM E+ ES+KII Q + GPV A PKI+
Sbjct: 61 YDRFDFDVPVGSVGDAWDRYVCRMEEIEESLKIIEQAAEQFPS---EGPVLAKVPKII-- 115
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
P GE + +E+P+GE G Y+ S+G +PYR K R
Sbjct: 116 -----------------------KAPKGEAFVRIESPRGEIGCYIASEGKKEPYRLKFRR 152
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
P + +LQ + L KG +A++ ILG +DIV GEVD
Sbjct: 153 PSFYNLQILPKLLKGENIANLITILGGVDIVLGEVD 188
>gi|167906547|ref|ZP_02493752.1| putative hydrogenase subunit [Burkholderia pseudomallei NCTC 13177]
Length = 549
Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats.
Identities = 69/282 (24%), Positives = 106/282 (37%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H + GE V R++ +G HRG E+L E L R+
Sbjct: 182 EIAVGPIHAGVIEPGHFRFSVVGEKVLRLEERLGYAHRGVERLFERADALAGSRLAARIA 241
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + AY +A+E+ L I +P R +R L E R+ +HL ++ D G
Sbjct: 242 GDSTVAFAWAYCMALEQALRIRVPDRALRLRALLLERERVANHLGDLGALGNDAGFAVGL 301
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+E + +R G R PGGV +DI + I CD + +
Sbjct: 302 AHFSRLKEDWLRMQDRIFGHRYLMDAIVPGGVARDIAADDAAAIVAQCDRIEREVRTMQT 361
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + R G + + +G G+ R SG D+R Y L D+
Sbjct: 362 IYDDQSGLQDRFAGTGRLDAQAVAHFGVCGLAARASGQPRDVRADHRLAPYDALRIDVSR 421
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSA 291
GD R VR E ES++ IR + L ++
Sbjct: 422 DARGDVAARVAVRFAETYESMRAIRALLADLPDDGLAAEIAP 463
>gi|111017055|ref|YP_700027.1| Ni-dependent hydrogenase large subunit [Rhodococcus jostii RHA1]
gi|110816585|gb|ABG91869.1| Ni-dependent hydrogenase large subunit [Rhodococcus jostii RHA1]
Length = 422
Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats.
Identities = 54/414 (13%), Positives = 107/414 (25%), Gaps = 37/414 (8%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G R+ + + E V I R E + + FL+ R+ + P+ + +
Sbjct: 8 VEGEGRVDVTVREGRAEHVTLDIYEPPRFFESFLRDRHFLEPPDITSRICGICPVAYQVS 67
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG------------ALT 127
A+E+ G+E+ + +R L I SH+L++
Sbjct: 68 ACNAIEQACGLELDDDVRDLRRLLYCGEWIASHVLHIYFLHAPDFLGLPDSIALARHDRE 127
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
G ++ + G +H R GG H+ + + +
Sbjct: 128 AVERGLSLKKAGNAILDAIGGRPIHPVNVRIGGFHRAPTAAELIPLSDQLRTALDHAVAT 187
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
++ + +D+ G + +G + + ++
Sbjct: 188 VRWVSSFDFPDIELDHDLLALHDDSRYAIEDGEIRSSTGLRCTADEFPKHVVEHQVPHST 247
Query: 248 PIGKHGDCYDRYLVRM-MEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ D + S ++ IV +
Sbjct: 248 ALHAELDGRRYLTGPLARYSLNSSRLGGVAARTAADAGLGAQCRNPYRSIVVRAVEVVYA 307
Query: 307 SMESLIHHFKLYTEGYHVPVGE-----VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
E+L + G + EAP+G D I P
Sbjct: 308 VEEALRIIDRYERPPQPFTAGSPIRTVGHGVSEAPRGLLYHRYEVDPAGLIRAATIVPPT 367
Query: 362 YAHLQAMEFLCK-----GHQLAD------VSAILGSLDIVFGE--------VDR 396
+ A+E + LAD + + D VDR
Sbjct: 368 SQNQAAIEHDLRRAVDGNLMLADDELTTLCERTIRNYDPCISCATHFLTLTVDR 421
>gi|297569389|ref|YP_003690733.1| nickel-dependent hydrogenase large subunit [Desulfurivibrio
alkaliphilus AHT2]
gi|296925304|gb|ADH86114.1| nickel-dependent hydrogenase large subunit [Desulfurivibrio
alkaliphilus AHT2]
Length = 496
Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats.
Identities = 71/456 (15%), Positives = 124/456 (27%), Gaps = 83/456 (18%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G R+ + LD +VE H+ L RG E + + R + P++
Sbjct: 13 IEGHARITITLDDRGLVEDCRLHVTQL-RGFEAFCVGRPLAEMPSLTARTCGICPVSHLL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV--------------- 123
A A A ++LL + IP +R L + + SH L+ A
Sbjct: 72 ASAKACDELLAVRIPPAAVRLRQLLNYGQLVQSHALSFFHLASPDLLLGMDAAPEQRNIF 131
Query: 124 ----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R ER +G R+H + PGGV + + E I
Sbjct: 132 GLAAARPEVAKEGIALRRFGQQLIERLAGKRIHPDWVVPGGVSRPLSRENGAAIAAELPG 191
Query: 180 FPSALNDISDLLTG-NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
A + LL G F + G +G + G L +
Sbjct: 192 MLQAAQNNLVLLQGVLENFTAEIAHFANFPSGWLALAGEAGQLEYYDGPLRLLDQQGEEL 251
Query: 239 CYSELDFDI----PIGKHGDCYDRYLVRMMEMRESV------------------KIIRQC 276
D Y + + E+ + +
Sbjct: 252 FSEADPLRYQQQLAEQSEADSYLKSPYHRPQGPEAGLYRVGPLARLNAARRCGTPLADEA 311
Query: 277 VNRLLGKNKVGPVSASDPKIVPPKRADM--KRSMESLIHHFKLYTEGYHVPVG----EVY 330
+ + GPV++S + ++ L+ +Y G E
Sbjct: 312 LAAFRELSPQGPVTSSFHYHYARLIEIIHGLEKIQQLLADDTIYDPRVRATAGANAPEGV 371
Query: 331 AAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK--------GH------- 375
EAP+G + D + + + A++ K G+
Sbjct: 372 GICEAPRGTLIHHYRIDEQGRISAVNMMIATGHNSLAIQRGLKQAARAFINGNGENDGES 431
Query: 376 -------QLAD-----------VSAILGSLDIVFGE 393
++A+ + A+L D
Sbjct: 432 GKRAESREIAENKEIREGLLNRIEAVLRCYDPCLSC 467
>gi|146279405|ref|YP_001169563.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodobacter
sphaeroides ATCC 17025]
gi|145557646|gb|ABP72258.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodobacter
sphaeroides ATCC 17025]
Length = 474
Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats.
Identities = 67/470 (14%), Positives = 126/470 (26%), Gaps = 91/470 (19%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
GP + G L + L++ V + L+RG E+++E + A+ R+ +
Sbjct: 6 VGPFN-RVEGDLEVHLDVAEGRVVSARVNAP-LYRGFERMLEGRDPRDALTITPRICGIC 63
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP--- 129
++Q A A A+ +GIE G + L + + HL + M
Sbjct: 64 SISQSMAAARALGAAMGIEPTPEGARVAALIHAVENVSDHLTHFNLFFMPDFTRPAYAGR 123
Query: 130 ------------------LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
R +LM +G H +PGGV + P
Sbjct: 124 PWHGRAVARFTAIEGSAQREAVAARAELMHILGLLAGKWPHTLAIQPGGVTRAPGPSERM 183
Query: 172 DIGCWCDSFPSA---------LNDISDLLTGNRIFKQRNVNIGTVKL-----------ED 211
I +F L + +L + + + + G
Sbjct: 184 RILASLRAFRRFLERVMIGGPLEEFVELPDKAALMRWQRGDAGLFLEIAADLGLESLGRG 243
Query: 212 AWGWGFSGVMIRGSGAAWD----LRKSQP--------------------YECYSELDFDI 247
+ G +G W R+++P + + D
Sbjct: 244 GGRYLSFGAYPLATGRIWPEGIREREARPLDLSLIREDLSHSWMLGPTAHPSAGQTLPDE 303
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
+ + + E+ + RQ V + ++ +
Sbjct: 304 EMRDPAYSWCKAPRFDGLPMETGALARQVVAGHPLALDLAREGGVLARVAARLLELARTQ 363
Query: 308 --MESLIHHFKLY-----TEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
ME L + G+ VEA +G G +L +I AP
Sbjct: 364 LVMEDLAGAIDVTARFMAAPAPVPEAGQGAGLVEAARGALGHWLSIR-NGLISTYQIVAP 422
Query: 361 GYAHLQ---------AMEFLCKGHQLAD-------VSAILGSLDIVFGEV 394
+ +E + + V ++ S D
Sbjct: 423 TTWNFSPRDAAGVPGPLEAALVDAPVREGEETPVSVQHVVRSFDPCMVCT 472
>gi|45358386|ref|NP_987943.1| coenzyme F420-non-reducing hydrogenase subunit alpha [Methanococcus
maripaludis S2]
gi|44921144|emb|CAF30379.1| coenzyme F420-non-reducing hydrogenase subunit alpha [Methanococcus
maripaludis S2]
Length = 471
Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats.
Identities = 58/436 (13%), Positives = 121/436 (27%), Gaps = 62/436 (14%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ L D +++V+ H+ + RG EK +E + A + R+ + ++
Sbjct: 12 VEGHGKVTLSFDDSGKLDKVNFHVVEV-RGFEKFLEGRYIEDAPVFTPRICGICQVSHNL 70
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFE---- 134
A A AV+ + G++IP ++R L + + SH L+ A +
Sbjct: 71 ASARAVDNVFGVKIPKTADMLRNLMQQASNVHSHALHFGMLASPDLMFPMTDDALKRNVL 130
Query: 135 ---------------EREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
R+ ++ G +H GG + + E +++ ++
Sbjct: 131 GVASENMDVVKDAISMRKIGQTIIQKVGGRAIHPVTAVVGGQSKPLTEEERDELLKMSEN 190
Query: 180 FPSALNDIS----DLLTGNRIFKQRNVNIGTVKLEDAWGWG-----------------FS 218
LL G + + G
Sbjct: 191 LVDTAERTLVVGKQLLEGLKEQDLLELGYFESYHMGMVNNGAQDIYEGKIRVVNPEGKIE 250
Query: 219 GVMIRGSGAAWDLRKSQPYE----CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIR 274
+ +PY Y + + R V +
Sbjct: 251 YEYEPSEYLNYMSEGVRPYSYLKFPYLTEKGPVDGVYRVNTLSRLNVCDRMPTPIAQKYY 310
Query: 275 QCVNRLLGKNKVGPVSASDPKIVPP--KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAA 332
+ + GK P+ +++ +++ +E VGE
Sbjct: 311 EEFVKTFGKPAHHPMLFHYARLIELISSAELIRKFLEDDAIVGTDIRVEPTDLVGEGVGC 370
Query: 333 VEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM--------------EFLCKGHQLA 378
+EAP+G + +D + + AM K H L
Sbjct: 371 LEAPRGTLVHHFKTDDKGIITDANLVVATVQNNPAMDIGVQKVAEKYIKTPEDAKPHVLN 430
Query: 379 DVSAILGSLDIVFGEV 394
+ ++ + D
Sbjct: 431 HMEMVIRAYDPCLSCA 446
>gi|77993216|dbj|BAE46796.1| bidirectional hydrogenase H subunit [Nostoc sp. PCC 7422]
Length = 482
Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats.
Identities = 60/446 (13%), Positives = 113/446 (25%), Gaps = 75/446 (16%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD V H+ RG EK E + + R+ + P++
Sbjct: 12 IEGHAKISIYLDDSGQVSDARFHV-TEFRGFEKFCEGRPLWEMPGITARICGICPVSHLL 70
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV--------------- 123
A A A +++L + IP + +R L + I SH L+ +
Sbjct: 71 ASAKAGDRILAVTIPKAAEKLRRLMNLGQIIQSHALSFFHLSAPDLLLGMDSDPEKRNVF 130
Query: 124 ----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ E+ G ++H ++ PGGV + + E I
Sbjct: 131 GLIAAEPELARGGIRLRQFGQEIIEQLGGRKIHPSWAVPGGVREPLSAEGRTHIQNRIPE 190
Query: 180 FPSALNDISDLLTG-NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA----------- 227
+ + D G +++ G G+ G
Sbjct: 191 ARTTILDALGRFKGLLNNYEKEMQTFGNFPSLFMGLVTPDGLWENYDGHIRFVDSAGNII 250
Query: 228 ------------------AWDLRKSQPYECYSELDFDIPIGKHGDCY-----DRYLVRMM 264
KS Y D Y R +
Sbjct: 251 ADKLEPTRYQEFIGEAVQPDSYLKSPYYRPLGYPDRSDYCRLDSGIYRVGPLARLNICSH 310
Query: 265 EMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHV 324
+ +++ +E ++ +
Sbjct: 311 IGTPLADAELREFRDYGKGTVTSSFFYHYARLIEILACI--ERIEIMMDDPDFLSTKLRA 368
Query: 325 PVG----EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME--------FLC 372
G E EAP+G + D + + + AM +
Sbjct: 369 KAGINQLEAVGCSEAPRGTLFHHYQVDENGLLQQVNLVIATGQNNLAMNRTVAQIARYFI 428
Query: 373 KGHQLAD-----VSAILGSLDIVFGE 393
G ++ + V A + + D
Sbjct: 429 HGSEIPEGMLNRVEAGIRAFDPCLSC 454
>gi|85857971|ref|YP_460173.1| nickel-dependent hydrogenase [Syntrophus aciditrophicus SB]
gi|85721062|gb|ABC76005.1| nickel-dependent hydrogenase [Syntrophus aciditrophicus SB]
Length = 441
Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats.
Identities = 53/415 (12%), Positives = 117/415 (28%), Gaps = 41/415 (9%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +++++ +++ + + R E ++ ++ +A R+ + A
Sbjct: 16 VEGHGNIVIDVKEGKIDKCEFQVVESPRLFEGMLRGRSIFEAQHITSRICGICSCGHSLA 75
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV------------GALT 127
A E LG+ + +R L + + SH+L+V A
Sbjct: 76 SIQAAEDALGVTPTEQTIKLRKLLLDYEFLDSHVLHVYLLAAPDVLGVPSFVPLVKTHNA 135
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
++ + G +H GG + P+ ++ + +S + +
Sbjct: 136 VVRRALRMKKLCNDVCDILVGRHVHPISAIVGGFTKLPRPKDLDAMLEMLESMRDDMAET 195
Query: 188 SDLL--TGNRIFKQRNVNIGTV--KLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
L F + +G V E G G D R++
Sbjct: 196 LALAKTLQFPDFYRETEYVGLVSDDEEYPLLMGDVGSTDGKRLGKKDYRQATNEFIDPRS 255
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNK--VGPVSASDPKIVP--P 299
L R + + + + LG P + ++V
Sbjct: 256 SAKFAKWSRDSYLVGALARFNLNSDKLHPTAKAIAEELGLKPICHNPYLNTVAQVVEIVH 315
Query: 300 KRADMKRSMESLIHHFKLYTEGYH----------VPVGEVYAAVEAPKGEFGVYLISDGG 349
++ L + Y E V G+ AVE P+G ++D
Sbjct: 316 CYEHAIDLIKDLKKNGINYDEEIVVGVNEQQKIPVRAGDGVGAVEVPRGILFHNYVTDSN 375
Query: 350 NKPYRCKIRAPGYAHLQAMEFLCKGHQ--LAD---------VSAILGSLDIVFGE 393
+ P ++ +E+ + D + ++ + D
Sbjct: 376 GIIEQANCIIPTNQNIANIEYDMMKLLPEILDQTKEEITLKMEMLVRAYDPCISC 430
>gi|199594750|gb|ACH90839.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594788|gb|ACH90858.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594798|gb|ACH90863.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|301318186|gb|ADK67008.1| NADH dehydrogenase [Stenotrophomonas rhizophila]
gi|301318220|gb|ADK67025.1| NADH dehydrogenase [Stenotrophomonas maltophilia]
gi|301318222|gb|ADK67026.1| NADH dehydrogenase [Stenotrophomonas maltophilia]
Length = 148
Score = 170 bits (432), Expect = 3e-40, Method: Composition-based stats.
Identities = 92/148 (62%), Positives = 115/148 (77%)
Query: 17 HPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQ 76
HPAAHGVLRLILE+DGE + R DPH+GLLHRGTEKL E+K F Q++ Y DRLDYV+ M
Sbjct: 1 HPAAHGVLRLILEMDGETIMRADPHVGLLHRGTEKLAESKPFNQSIGYMDRLDYVSMMCN 60
Query: 77 EHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEER 136
EHAY A+E L+GIE P R Q IR L+ EI RIL+HL+ + + A+D+GA+ L+ F ER
Sbjct: 61 EHAYVRAIETLMGIEAPERAQYIRTLFDEITRILNHLMWLGSNALDLGAMAVMLYAFRER 120
Query: 137 EKLMVFYERASGSRMHAAYFRPGGVHQD 164
E+LM YE SG+RMHAAY+RPGGV++D
Sbjct: 121 EELMDCYEAVSGARMHAAYYRPGGVYRD 148
>gi|296269831|ref|YP_003652463.1| nickel-dependent hydrogenase large subunit [Thermobispora bispora
DSM 43833]
gi|296092618|gb|ADG88570.1| nickel-dependent hydrogenase large subunit [Thermobispora bispora
DSM 43833]
Length = 428
Score = 170 bits (432), Expect = 3e-40, Method: Composition-based stats.
Identities = 52/405 (12%), Positives = 103/405 (25%), Gaps = 33/405 (8%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + + ++ I R E L+ + + R+ + P+ + +
Sbjct: 14 VEGEGGLRVRARDGRITELELTIYEPPRFFEALLRGRAHTEPPDITARICGICPIAYQMS 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG------------ALT 127
A+E G E+ + +R+L I SH L++
Sbjct: 74 ACQAIEAACGAEVTGPLRDLRLLLYYGEWIASHALHIHLLHAPDFLGYDSGIAMAADHRE 133
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
G ++ G +H R GG ++ + + +
Sbjct: 134 AVERGLALKKAGNELVAVIGGRPIHPVNVRVGGFYRVPTRKELAPVAELLRRARDDALAT 193
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ G SG + G A+ + + + ++
Sbjct: 194 VSWVAGFDFPDVELGYRFLALRHPEEYAILSGTVATSDGTAFGVAEWPEHVTEEQVPHST 253
Query: 248 PIGKHGD-----CYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP--PK 300
+ D + R S + LG P + + V
Sbjct: 254 ALHARLDGTVYLVGPLARYAVNHDRLSPLARQAAAEAGLGPVCRNPFQSIVVRAVEVVHA 313
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ R +E L Y G + A EAP+G D I P
Sbjct: 314 CDEALRILEHLEEPDAPYIP-VEPRPGVGHGATEAPRGTLYHRYRIDEAGLIAEADIVPP 372
Query: 361 GYAHLQAMEFLCKGHQL------------ADVSAILGSLDIVFGE 393
+ +E + + A ++ + D
Sbjct: 373 TAQNQSRIEADLR-ELIEPRLHLPKPELAAFCERVIRNHDPCISC 416
>gi|222445296|ref|ZP_03607811.1| hypothetical protein METSMIALI_00924 [Methanobrevibacter smithii
DSM 2375]
gi|222434861|gb|EEE42026.1| hypothetical protein METSMIALI_00924 [Methanobrevibacter smithii
DSM 2375]
Length = 474
Score = 170 bits (432), Expect = 3e-40, Method: Composition-based stats.
Identities = 64/439 (14%), Positives = 123/439 (28%), Gaps = 66/439 (15%)
Query: 20 AHGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ ++LD + V H+ + RG EK ++ + + R+ + +
Sbjct: 12 IEGHAKITVQLDDDGNVVDTRLHV-MEFRGFEKFLQGRPVEELARIVPRICGICDVQHHL 70
Query: 79 AYALAVEKLLGIE---IPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV------------ 123
A A AV+++ G E I +R + + + SH L+ A
Sbjct: 71 AAAKAVDQIFGFEDEKILPTAYKMREIMNWGSFMHSHALHFYFLAAPDLIIPDGTRKTRN 130
Query: 124 ------GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWC 177
L E R + + G +H PGG+ ++ E +D+
Sbjct: 131 VFQIIKDQPEIALQAIELRRNGLEIVRKIGGRPIHPTSSTPGGISTELDDETQKDLLQRA 190
Query: 178 DSFPSALNDISDLLTG-NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSG-AAWDLRKSQ 235
DL ++G G GV +G
Sbjct: 191 QRNVELAQATLDLAKPIFEEKIDLINSLGYFGDTRHCGLVNDGVWDVYNGDVRIKDVDGS 250
Query: 236 PYECYSELDFDIPIGKHGDCYDRYLVRM----------------------MEMRESVKII 273
Y Y L++ + +H Y +M ++ +
Sbjct: 251 IYTEYKNLEYKDVVAEHVKPYSWLKFPYIKELGYPEGIYRVAPLSRINVADKMPDAAPLA 310
Query: 274 RQCVNRLLGKNK--VGPVSASDPKIVPPKRADMKRSMESLIHH--FKLYTEGYHVPVGEV 329
+ K P+ +++ A + + ++L + E GE
Sbjct: 311 QAAFEEFHDKFGYAQAPLLFHWARLIE-LLASAECAADALDQDLSGPKFPEELERTAGEG 369
Query: 330 YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLC---------KGHQLAD- 379
VEA +G D I + AME G ++ D
Sbjct: 370 AGIVEAARGTLIHNYACDDNGLVTEANIVVATIQNNPAMEMGIQQVAKDYIKPGVEVDDK 429
Query: 380 ----VSAILGSLDIVFGEV 394
+ ++ + D
Sbjct: 430 IFNLMEMVIRAYDPCLSCA 448
>gi|134046738|ref|YP_001098223.1| F420-non-reducing hydrogenase subunit A [Methanococcus maripaludis
C5]
gi|132664363|gb|ABO36009.1| F420-non-reducing hydrogenase subunit A [Methanococcus maripaludis
C5]
Length = 418
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 61/400 (15%), Positives = 113/400 (28%), Gaps = 47/400 (11%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD V HI L RG E+ + + + R+ +
Sbjct: 12 LEGHGKVSITLDDTGKPTDVKLHITAL-RGFEQFVIGRPAEEVPRIVPRICGICQTPHHL 70
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A AV+ G EIP +R L + SH L+ A
Sbjct: 71 ASVKAVDAAWGAEIPSAAGKLRELMHLGNMMHSHALHFYYLAAPDFVLGPDSDPAARNII 130
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
R E G +H PGGV + + E +++ D
Sbjct: 131 GVIGAVPEVAKKAIAMRRVGQAIVETVGGRAIHPVTGVPGGVSKALSEEKRDELLEEIDD 190
Query: 180 FPSALNDISDLLTG-NRIFKQRNVNIGTVKLED-----AWGWGFSGVMIRG---SGAAWD 230
+ + L+ N + +G + F G +R G
Sbjct: 191 MIAFGQEGVALIKALNEKYMDVAKTLGVIDTWYLGLVKDGKHNFYGDTLRFMSPDGKQIT 250
Query: 231 LRKSQPY----------ECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVK-----IIRQ 275
K Y Y + ++ +G Y + M+ + +S+ R+
Sbjct: 251 DFKPSEYLDNIGEHVVEHNYVKYPYNKKVGYPEGLYRVGPLGMINVCDSMPTPLAEEARK 310
Query: 276 CVNRLLGKNKVGPVSASDPKIVPP--KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAV 333
GK ++ + +++ +K +E G A+
Sbjct: 311 DFADTFGKPANQSLAYNHARLIELLGSCERVKELLEDPEITSTDIKAEVEPKAGNGVGAI 370
Query: 334 EAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK 373
AP+G +D + + ++ ME +
Sbjct: 371 YAPRGTLIHNYETDDKGIVVKANMIVATTHNVPTMEKAIQ 410
>gi|126732735|ref|ZP_01748530.1| hydrogenase large subunit [Sagittula stellata E-37]
gi|126706731|gb|EBA05802.1| hydrogenase large subunit [Sagittula stellata E-37]
Length = 475
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 78/476 (16%), Positives = 133/476 (27%), Gaps = 97/476 (20%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
T+ GP + G L + LE+ V + + RG E+++ K A+ R+
Sbjct: 4 TLLVGPFN-RVEGDLEIRLEVADGRVTAAYANSP-MFRGFERMMIGKGPEDALTITPRIC 61
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ ++Q A ALA+ L G E+ G + L + +L HL + M A +
Sbjct: 62 GICSISQSAAAALALADLAGAEMAPEGARVAALLHGVENLLDHLTHFYLFFMPDFARSGY 121
Query: 130 ---------------------LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE 168
R +L G H + GGV +
Sbjct: 122 AGRAWHERVQARFLAGQGSGTRAAVAARAELFHVVGLLGGKWPHTLAIQTGGVTRAPSVR 181
Query: 169 LVEDIGCWCDSFPSALN--------DISDLLTGNRIFKQRNVNI---------------- 204
IG W F L + D L ++ +
Sbjct: 182 DKARIGAWLAGFRRFLEREVFGAPLEAFDTLADVAGLERWSTGDAGLFLEAAQDTGLAGL 241
Query: 205 -----------------GTVKLEDAWGWGFSGVMIRG------SGAAWDLRKSQPYECYS 241
G + W G G + S A + P +
Sbjct: 242 GRGPGRYMSFGAYPVPEGRLFRRGMWQDGAVGPVDETAIVEDLSHAWMLGEAAHPSAGET 301
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGK----NKVGPVSASDPKIV 297
D + + + E E + RQ V+ + G + +++
Sbjct: 302 RPD--AAMRADAYSWCKAPRLGGETVEVGALARQIVDGHPLAVALAGEGGVRARVAGRLL 359
Query: 298 PPKR--ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRC 355
R ++ + + T+ G VEA +G G +L S G +
Sbjct: 360 EIARTQIALEGLLAGIAPEKPFMTDVALPRDGSGVGLVEAARGSLGHWL-SVAGGRISSY 418
Query: 356 KIRAPGYAHLQ---------AMEFLCKG--------HQLADVSAILGSLDIVFGEV 394
+I AP + +E G LA V ++ S D
Sbjct: 419 QIVAPTTWNFSPRDGGGVPGPVEAALVGAEVLEGEDTPLA-VQHVVRSFDPCMVCT 473
>gi|224368287|ref|YP_002602450.1| MvhA [Desulfobacterium autotrophicum HRM2]
gi|223691003|gb|ACN14286.1| MvhA [Desulfobacterium autotrophicum HRM2]
Length = 449
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 64/448 (14%), Positives = 120/448 (26%), Gaps = 70/448 (15%)
Query: 10 TINFGPQHPAAHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
TIN P G + ++LD V H + RG EK +E K + R+
Sbjct: 4 TINIQPL-SRIEGHASIEIKLDDQGNVADAITHFNSI-RGFEKFVEGKPAEEVTRIVTRI 61
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG---- 124
+ P + + AV+ E+ G L+R + I +L+ A
Sbjct: 62 CGICPWHHHMSSVKAVDACFDAEVAPAGHLLRECMQNMAHINDKILHFYFLAAPDFVMGP 121
Query: 125 ---------------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL 169
A R+K + E+ +G +H PGG + +
Sbjct: 122 DADYSVRNVMGIANAAPDLARQVIRMRQKSQMMMEKFAGKVIHPIAGVPGGFSKPMNESQ 181
Query: 170 VEDIGCWCDSFPSALNDISDLLTG--NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA 227
+++ + +GT+ G + G
Sbjct: 182 RQEMVEDSKELLEFAKFSIKHAKEEIFPKYLDLVTTLGTITTGFIGTVDKDGSLNFYDGK 241
Query: 228 AWDLRKSQPYECYSELDFDIP-------IGKHGDCYDRYLVRMMEM--------RESVKI 272
+R ++ + + D+ + Y + M S +
Sbjct: 242 IRLMRPDGSFDDFEDTDYLDYISERTLDVSYGKYPYAKSWNEGFSMDLDAPKGIYRSNCL 301
Query: 273 IR-QCVNRLL---------------GKNKVGPVSASDPKIVP--PKRADMKRSMESLIHH 314
R C +++ GK + +++ + +
Sbjct: 302 ARINCCDQIPTPLAQKELEEFRKSFGKPAQHTLLYHWARLIELVYSCEKTLELLNNPAIT 361
Query: 315 FKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL--------Q 366
K G VEAP+G +D + +L Q
Sbjct: 362 GKETRCTVTPKAGRGVGHVEAPRGTLIHDYTTDENGCIKTANLIVGTTHNLAPISMSVKQ 421
Query: 367 AMEFLCKGHQLAD-----VSAILGSLDI 389
A L K Q+ + V + + D
Sbjct: 422 AANMLIKNGQVDETILNKVEMAVRAYDP 449
>gi|126462905|ref|YP_001044019.1| hydrogen:quinone oxidoreductase [Rhodobacter sphaeroides ATCC
17029]
gi|126104569|gb|ABN77247.1| Hydrogen:quinone oxidoreductase [Rhodobacter sphaeroides ATCC
17029]
Length = 475
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 71/475 (14%), Positives = 121/475 (25%), Gaps = 100/475 (21%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
GP + G L + LE+ V + L+RG E+++E + A+ R+ +
Sbjct: 6 VGPFN-RVEGDLEVHLEVADGAVTAARVNAP-LYRGFERMLEGRDPRDALTITPRICGIC 63
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP--- 129
++Q A A A+ G+ G+ + L + HL + M
Sbjct: 64 SISQSVAAARALGAATGLVPAPAGERVAALIHAVENAADHLTHFNLFFMPDFTRPAYAGR 123
Query: 130 ------------------LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
R L+ +G H +PGGV +
Sbjct: 124 SWHGRAVARFTAMEGSAQREAVAARADLLHILGLLAGKWPHTLAVQPGGVTRAPGAAERM 183
Query: 172 DIGCWCDSFPSALN--------DISDLLTGNRIFKQRNVNIGTVKLE------------- 210
I SF L + L + LE
Sbjct: 184 RILSSLRSFRRHLERTLFGGPLEAFAALETEAALLSWGRGDAGLFLEIAADLGLAGLGCG 243
Query: 211 ------DAWGWGFSGVMIRG--------------------SGAAWDLRKSQPYECYSELD 244
G S A + P E + D
Sbjct: 244 AGRYLSFGAYPLPEGPAFAAGTWQAGAPVPLDPGLIREDLSHAWMLGEAAHPSEGRTLPD 303
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNK----VGPVSASDPKIVPPK 300
+I + + + E+ + RQ V G ++ +++
Sbjct: 304 EEI--REAAYSWCKAPRLDGRPMETGALARQVVAGHPLARDLARQGGVLARVGARLLELA 361
Query: 301 RADMKRSMESLIHHFKL-----YTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRC 355
R + ME L G + VEA +G G ++ G R
Sbjct: 362 RTQIL--MEELAQGIDPAARFMVAMGPLPRDAQGAGLVEAARGALGHWVRLRG-GLIDRY 418
Query: 356 KIRAPGYAHLQ---------AMEFLCKGHQLA-------DVSAILGSLDIVFGEV 394
+I AP + +E G + V ++ S D
Sbjct: 419 QIVAPTTWNFSPRDAEGVPGPLEAALVGAPVEPGEKTPLSVQHVVRSFDPCMACT 473
>gi|170076831|ref|YP_001733469.1| hydrogenase large subunit H [Synechococcus sp. PCC 7002]
gi|22652025|gb|AAN03569.1|AF381045_6 hydrogenase large subunit H [Synechococcus sp. PCC 7002]
gi|169884500|gb|ACA98213.1| hydrogenase large subunit H [Synechococcus sp. PCC 7002]
Length = 474
Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats.
Identities = 63/440 (14%), Positives = 117/440 (26%), Gaps = 73/440 (16%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD V H+G RG EK E + F + R+ + P++
Sbjct: 13 IEGHAKISIYLDDQGEVHEARFHVGE-FRGFEKFCEGRPFWEMPALTSRICGICPVSHLI 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV--------------- 123
A + ++LL ++IP+ +R + + SH L+ +
Sbjct: 72 ASSKTGDQLLAVKIPVGAGKLRRMINLAQITQSHALSFFHLSSPDLIFGWDSDPKTRNVF 131
Query: 124 ----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ + ++H A+ PGGV + E I
Sbjct: 132 GLIAADPDLARGGIRLRKFGQDIIKILGSQKVHPAWSIPGGVRSPLTKEGQTYIKEGLPE 191
Query: 180 FPSALNDISDLLTGNRIFKQRNVNI-GTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQ--- 235
+ + + L Q V + G G SG G +
Sbjct: 192 AKNTVKNALSLFKKILDSHQEEVTVFGNFPSLYLGLIGESGAWEHYGGILRMIDSHGNIV 251
Query: 236 -------------------------PYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESV 270
PY +G + +
Sbjct: 252 GDRLDPNNYHEFLGEKLQEDSYLKSPYYKLFGETGVYRVGPLARLNICEHFGTEAADQEL 311
Query: 271 KIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVG--- 327
RQ G+ +++ + +E +I L++ G
Sbjct: 312 IEYRQR----HGRIVQASFVYHHARLIEILGS--LERIERMIDDPDLFSNRLQAEAGVNQ 365
Query: 328 -EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL--------QAMEFLCKGHQLA 378
E EAP+G + D + + + Q + G +A
Sbjct: 366 TEAVGVSEAPRGTLFHHYQVDENGLLKKINLVIATGQNNFAINRTVTQIAKHYIHGETVA 425
Query: 379 D-----VSAILGSLDIVFGE 393
+ V A + + D
Sbjct: 426 EGILNRVEAGVRNYDPCLSC 445
>gi|225174993|ref|ZP_03728990.1| nickel-dependent hydrogenase large subunit [Dethiobacter
alkaliphilus AHT 1]
gi|225169633|gb|EEG78430.1| nickel-dependent hydrogenase large subunit [Dethiobacter
alkaliphilus AHT 1]
Length = 427
Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats.
Identities = 59/404 (14%), Positives = 121/404 (29%), Gaps = 31/404 (7%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + L +E + ++ R + + + + + R+ + P++ +
Sbjct: 14 LEGEAALDVNLVNGTIESLKLNVFEPPRFFQNFLVGRKYRELPDITARICGICPVSYQMT 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG------------ALT 127
A+E +E+ + +L+R L++ I SH+L+V A
Sbjct: 74 SINAIEHAFDVEVSEQTRLLRKLFALSQFIQSHVLHVFMLAAPDFLGYESVISMAEDFPD 133
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
+ + G +H R GG E ++ ++
Sbjct: 134 EVKLALDLKRLGNDITALIGGREVHPVTPRVGGFSDLPSQEALKQAAERLEAALEGGMAA 193
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ L+ G + + G ++ +G D + + + +
Sbjct: 194 AKLVGGLSVPDMSWDFTSVALSDKKEYAVNGGRLVSDNGLDIDPADYREFLHEAHVSPSH 253
Query: 248 PI-----GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+ G V + R S K + P + D ++
Sbjct: 254 ALHSSLSGNSFLVGPLARVNLNFDRLSGKAKEAAALTGVSFPSKNPFHSVDARVAE-LVH 312
Query: 303 DMKRSMESLIHHFKLYTE--GYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
++ S+E + K E GY V G A EAP+G + I AP
Sbjct: 313 SIEESLEIIDALGKPVPEKNGYIVRPGCGAAITEAPRGILSHSYCFNELGVVEEADIVAP 372
Query: 361 GYAHLQAMEFLCKGHQ-----LAD------VSAILGSLDIVFGE 393
+++ ME + L+D + + D F
Sbjct: 373 TSRNVKNMEEGLRRFIPEHLDLSDEELTLKCEMYIRNYDPCFSC 416
>gi|134045690|ref|YP_001097176.1| coenzyme F420-reducing hydrogenase subunit alpha [Methanococcus
maripaludis C5]
gi|132663315|gb|ABO34961.1| coenzyme F420-reducing hydrogenase, alpha subunit [Methanococcus
maripaludis C5]
Length = 410
Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats.
Identities = 60/406 (14%), Positives = 116/406 (28%), Gaps = 33/406 (8%)
Query: 6 SRSFTINFGPQHPAA--HGVLRLILELDGEIVER------VDPHIGLLHRGTEKLIETKT 57
++ IN P G +L+L++D + + V P RG EK + KT
Sbjct: 2 GKTVEIN-----PTTRHEGHTKLVLKVDDDGIVEKGNYLSVTPV-----RGFEKFLVGKT 51
Query: 58 FLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVT 117
A R + P+ + A+E GI P G L+R L ++ SH L+
Sbjct: 52 AEFAPIAVSRFCGICPIAHATSSVEAIEDACGITPPKDGLLLRELTGLGNKMHSHPLHEF 111
Query: 118 ----TQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDI 173
+ + + R+ + G +HA + GG+ ++I I
Sbjct: 112 LIAPDFIPESDRVEYITRIQQMRKTGQYIVDTIGGEAIHAPNIKVGGMLKNITENAASKI 171
Query: 174 GCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF-SGVMIRGSGAAWDLR 232
C + + + L + +G+ + G+ D
Sbjct: 172 YYKCREYEKLAKEHVEYLIPIFESNMLVDGTEIPEKLGYHDFGYIATDATYGNRENIDQS 231
Query: 233 KSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSAS 292
+ Y Y + D+ + M R R G ++
Sbjct: 232 RVVEYTPYDVYEKDVAVQACTTIPRYNGRLMEVGP------RARFARFHDFKNKGAMAIH 285
Query: 293 DPKIVP--PKRADMKRSMESLIHHFKLYTEGYHVPVGE--VYAAVEAPKGEFGVYLISDG 348
+ ++ L + K + + GE EA +G D
Sbjct: 286 IARAYENVVHVKKAMEILDELDVNGKTRSNEPILGDGEKVGLGVHEAARGHNTHQAAIDA 345
Query: 349 GNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEV 394
+ ++ + +G ++ + D
Sbjct: 346 KGRITYYNAIVATTWNIPLIGKATEGTHYKFAEHVVRAYDPCVSCA 391
>gi|260893844|ref|YP_003239941.1| nickel-dependent hydrogenase large subunit [Ammonifex degensii KC4]
gi|260865985|gb|ACX53091.1| nickel-dependent hydrogenase large subunit [Ammonifex degensii KC4]
Length = 487
Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats.
Identities = 70/450 (15%), Positives = 130/450 (28%), Gaps = 77/450 (17%)
Query: 20 AHGVLRLILELD--GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQE 77
G ++ + L+ GE VE I L RG EK +E + + R+ V P
Sbjct: 12 LEGHGKIEIFLNERGE-VENAYFQIPEL-RGFEKFVEGRPAEEVPRIVSRICGVCPAAHH 69
Query: 78 HAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP-------- 129
AV+K+ G++ +R L+ I SHL + A + P
Sbjct: 70 ICAGKAVDKVFGVKPTPTAIKLRRLFYSAHYIHSHLAHFYALAAPDFVVGPEADPPVRNV 129
Query: 130 ------------LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCW- 176
+ R G H A+ PGGV + + + I W
Sbjct: 130 VGLINKVGLETGGQVIKARRLAQEIQAMLGGRATHPAFVLPGGVSKGLTEGERKQIEEWA 189
Query: 177 ---CDSFPSALNDISDLLTGNRIFKQRNVNIGT--------VKLEDAWGWGFSGVMIRGS 225
+ +L D++ N+ + + + + E + G +
Sbjct: 190 QFEVEFARFSLKLFEDVVLKNKQYLELIQSDAYRLETNYMGIVDEKNRVDFYDGEIRYVD 249
Query: 226 --GAAWDLRKSQPYEC----------YSELDFDIPIGKHGDC-------YDRYLVRMMEM 266
G K + Y Y + F +G G Y + +
Sbjct: 250 TQGREIGRYKEEEYLEHVAEHVEPWSYLKFPFLKKLGWKGFVEGPGTSIYQAAPLGRINA 309
Query: 267 RESVK-----IIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEG 321
+++K RQ G V + A+ + + +E +
Sbjct: 310 ADAMKTPLAEEERQKFFEFFGGRPVHNILATHWARLIELLQAAEELLELARDPEITSPDI 369
Query: 322 YHVP---VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK----- 373
++P GE +EAP+G + +D + + + + K
Sbjct: 370 RNIPEGVAGEGVGIIEAPRGTLTHHYKTDERGIVVKANLIVGTTNNNAPICMAVKKAAQH 429
Query: 374 ----GHQLAD-----VSAILGSLDIVFGEV 394
G + + + + D F
Sbjct: 430 LIKPGVAIKEGLLNMIEMAFRAFDPCFSCA 459
>gi|254283983|ref|ZP_04958951.1| nickel-dependent hydrogenase, large subunit [gamma proteobacterium
NOR51-B]
gi|219680186|gb|EED36535.1| nickel-dependent hydrogenase, large subunit [gamma proteobacterium
NOR51-B]
Length = 419
Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats.
Identities = 56/407 (13%), Positives = 108/407 (26%), Gaps = 34/407 (8%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L ++++ VERV+ +I R E + + F +A R+ + P+ + +
Sbjct: 1 MEGEGALHVDVNDGRVERVELNIFEPPRFFEAFLRGRDFSEAPDITARICGICPVAYQMS 60
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG------------ALT 127
A+E GI + + +R L I SH L+V +
Sbjct: 61 AVHAMEAACGISVGGALRELRRLLYCGEWIESHALHVYLLHAPDFLGYPGAVEMAQEHGS 120
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
G ++ G +H R GG ++ + + A D
Sbjct: 121 LLQQGLRLKKAGNAIISILGGREVHPINVRLGGFYRAPRRSELMALRDELSWGRDAAFDA 180
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ G ++ G D + ++
Sbjct: 181 VRWAGELVFPEFERDYEFVALRHPTEYPMNEGRIVSSRGVDIDYYEFSRVFEEFQVAHST 240
Query: 248 PIGKHGDC--------YDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
+ RY + + SV + L + P + + V
Sbjct: 241 ALHSRMRGQGAYLVGPLARYSLNFDRLPGSV--QSAALTAGLDQECRNPFKSIIVRAVEI 298
Query: 300 KRA-DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
A + + + A EAP+G + KI
Sbjct: 299 LFAFEEALRIIDCYEQPEESAVPVTPRASVGEWATEAPRGLLYHRYETSSNGSILEAKII 358
Query: 359 APGYAHLQAMEFLCK----GHQ-LAD------VSAILGSLDIVFGEV 394
P + ++E + G+ L D + + D
Sbjct: 359 PPTSQNQPSIEDDLRTVVEGNIALEDDELRSRCERSIRNYDPCISCA 405
>gi|226942598|ref|YP_002797671.1| Soluble nickel-dependent hydrogenase, large subunit, HoxH
[Azotobacter vinelandii DJ]
gi|226717525|gb|ACO76696.1| Soluble nickel-dependent hydrogenase, large subunit, HoxH
[Azotobacter vinelandii DJ]
Length = 419
Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats.
Identities = 51/412 (12%), Positives = 107/412 (25%), Gaps = 44/412 (10%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L L ++G+ V I R E + + + R+ + P+ + +
Sbjct: 4 VEGEGSLDLHIEGDRVVAARLGIFEPPRFFEAFLRGRGHAEVADMVARICGICPVAYQMS 63
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV------------GALT 127
A+E G+ + + + +R L I SH L+V G
Sbjct: 64 AVHALENAFGVRVEGQLRALRRLLYCGEWIESHALHVVMLHAPDFLGYPDAIRMAAGHGD 123
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
++ G +H R GG ++ + + D +
Sbjct: 124 RVRDALALKKAGNSIIRLLGGREIHPVNVRVGGFYRVPSRAELAPLAEELDRARDIAVGL 183
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDL--------RKSQPYEC 239
+ G G ++ G D+ + P+
Sbjct: 184 VRWVAGFPFPHIERDYEFVALRHPHEYPLNEGRLVSSRGLDIDIADYETEFEERQVPHST 243
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
RY + + E ++ L G+ +GP+ + + +
Sbjct: 244 ALHSHLKRRGAYLVGPLARYALNFDRLPEHIRA-------LAGEVGLGPLCRNPFQSIVV 296
Query: 300 KRADMKRSMESLIHHFKLYTE------GYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPY 353
+ ++ + E + Y + EAP+G
Sbjct: 297 RALEILYACEEALAIIAAYRPPDMACVPLEPRAATGFGCTEAPRGTLWHRYELSADGSVE 356
Query: 354 RCKIRAPGYAHLQAMEFLCK--GHQLAD---------VSAILGSLDIVFGEV 394
+I P + ++E + L D + + D
Sbjct: 357 AARIVPPTAQNQPSIEADLEAVATSLLDQPEEVIRRRCELSIRNHDPCISCA 408
>gi|332295191|ref|YP_004437114.1| Cytochrome-c3 hydrogenase [Thermodesulfobium narugense DSM 14796]
gi|332178294|gb|AEE13983.1| Cytochrome-c3 hydrogenase [Thermodesulfobium narugense DSM 14796]
Length = 520
Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats.
Identities = 59/493 (11%), Positives = 116/493 (23%), Gaps = 120/493 (24%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E++ +V+ G + RG E ++ + + A+ +R V M
Sbjct: 13 IEGHLRIEVEVENGVVKDA-WSSGTMARGFEAMLVGRQPMDAIYVTERSCGVCTMVHGLC 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV--------GALTPPLW 131
+ A++ G ++P G L+R L + H+ G
Sbjct: 72 SSRALDMAYGCKVPEAGILLRNLMLAALYMGDHIQIFYNLNAPDYIDITAVAGYKGNDPK 131
Query: 132 GFEEREKL----------------------------------------------MVFYER 145
++K+
Sbjct: 132 LLAIKDKIVALVKANDTAPFTPAYKGDQYTLTDPEIVTTLVSHYIQAIEARAIAQKCIAI 191
Query: 146 ASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS----------------- 188
G H A GGV E + + + ++
Sbjct: 192 FGGKSPHQAGVIQGGVTYHPNLEDLVKYKEYIAKVIDFVQNVYWKDILFLGSGPLLPVGQ 251
Query: 189 --------------DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGS--GAAWDLR 232
+ N G I S + +D
Sbjct: 252 AGLGGGYNNYLSGPEFPLDNSGKNFLWKGGVVTDGNLGAVQPLDGQKIAESVAHSWYDYS 311
Query: 233 KSQPYECYSELDFDIPIGKHG-DCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSA 291
+QP E + + K G + + + E + + +
Sbjct: 312 NNQPLLQPFEGETKFNLKKEGAYSFLKAPRYDGKPYEVGPLAWAMTVQPKEFMDIVTKLN 371
Query: 292 SDPKIVPPKRADMKRSMESLIHHFKLYTE---------------GYHVPVGEVYAAVEAP 336
P + A ++++ + K E + + VEAP
Sbjct: 372 IKPGFLARHAARAYQAVDVSKNVMKWVDELASLMGKGPLIVNDDKPTPDSAKGFGFVEAP 431
Query: 337 KGEFGVYLISDGGNKPYRCKIRAPGYAHLQA---------MEFLCKGHQLAD------VS 381
+G + + +G K + P + E G + D V
Sbjct: 432 RGFLSHWAVIEGK-KLKNYQQVVPTTWNASPRDANNVRGQYEQSLIGIPVPDPENPINVV 490
Query: 382 AILGSLDIVFGEV 394
+ S D
Sbjct: 491 RNIRSFDPCLACA 503
>gi|1617573|gb|AAB57892.1| NAD-reducing hydrogenase beta subunit [Rhodococcus opacus]
Length = 488
Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats.
Identities = 65/452 (14%), Positives = 127/452 (28%), Gaps = 79/452 (17%)
Query: 20 AHGVLRLILELDGEI-VERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD V H+ + RG EKL++ F +A R+ + ++
Sbjct: 13 IEGHGKVTVHLDDNNNVVDAHLHV-VEFRGFEKLVQGHPFWEAPMLMQRICGICFVSHHL 71
Query: 79 AYALAVEKL------LGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------- 124
A A++ + GI++ + IR L + SH +
Sbjct: 72 CGAKALDDMVGVGLKSGIDVTPTAEKIRRLGHYAQMLQSHATAYFYLIVPEMLFGMDAAP 131
Query: 125 -----------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDI 173
R+ + G RMH PGGV++++ +
Sbjct: 132 EQRNVLGLIEANPELVKRVVMLRKWGQEVIKAVFGRRMHGISSVPGGVNKNLSVAECQRF 191
Query: 174 GC------WCDSFPSALNDISDLLTG-NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSG 226
D + L + + + + V G + G
Sbjct: 192 LKGEEGLPSVDEVIEYAQEGVQLFYDFHEQNRVQVDSFANVSALSMSLVDADGNVDYYHG 251
Query: 227 ----AAWDLRKSQPYECYSELD-FDIPIGKHGDCYDRYLVRMMEMRESVK---------- 271
D Q ++ + LD F + + +L + R SV+
Sbjct: 252 KLRIIDDDKNVVQEFDYHDYLDHFSEAVEEWSYMKFPFLKALGRERGSVRVGPLGRLNVT 311
Query: 272 ------IIRQCVNRL----LGKNKVGPVSASDPKIVP--PKRADMKRSMES--LIHHFKL 317
+ ++ + R GK + + + + +K + L L
Sbjct: 312 NSLSTPLAQEALERFHAYTNGKANNMTLHTNWARAIEILHAAELIKELLNDPDLQKEQLL 371
Query: 318 YTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME-------- 369
T + GE VEAP+G + +D + + Q M
Sbjct: 372 LTPADNAWTGEGVGVVEAPRGTLLHHYRADQEGDITFANLVVATTQNNQVMNRTVRSVAE 431
Query: 370 -------FLCKGHQLADVSAILGSLDIVFGEV 394
+ +G A + + + D
Sbjct: 432 DYLGGQGEVTEGMMNA-IEVGIRAYDPCLSCA 462
>gi|292491626|ref|YP_003527065.1| nickel-dependent hydrogenase large subunit [Nitrosococcus
halophilus Nc4]
gi|291580221|gb|ADE14678.1| nickel-dependent hydrogenase large subunit [Nitrosococcus
halophilus Nc4]
Length = 428
Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats.
Identities = 49/389 (12%), Positives = 112/389 (28%), Gaps = 29/389 (7%)
Query: 34 IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIP 93
V + I R EK ++ +++ + R+ + P+ + + A+E I
Sbjct: 28 QVTDLRLRIFEPPRFFEKFLQGRSWKEVPDIVARICGICPVAYQMSATHAIESAFKATIT 87
Query: 94 IRGQLIRVLYSEIGRILSHLLNVTTQAMDVG------------ALTPPLWGFEEREKLMV 141
+ +R LY + SH L++ A G +
Sbjct: 88 PEIRALRRLYYCGEWMESHSLHIHLLAAPDFLGYPSAMAMAKDHPDEVKRGMRLQGLGNR 147
Query: 142 FYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRN 201
+ G ++ R GG ++ + ++ S + ++ +
Sbjct: 148 ILKIFGGRPVNPVGVRVGGFYRAPSRQEARELLELLQSALPNAEALVRWTASLKLPEVSR 207
Query: 202 VNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLV 261
G ++ G + + + ++ + H ++
Sbjct: 208 PAPFVSLRHPEEYPMNEGRLVSSQGLDIGAAEFEHHMVEYQVPHSTALHAHLHGQPYWVG 267
Query: 262 RMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEG 321
+ + ++ + LL + +G S + + + ++ ++ IH K Y
Sbjct: 268 PLARLNNNLDRLPPETATLLHETGIGWPSTNPYHSIIARALEVHLALLEAIHLLKHYRRP 327
Query: 322 ------YHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGH 375
G AA EAP+G D + +I P + ME +
Sbjct: 328 QQAYVAIEPRAGIGMAATEAPRGILWHRYELDAQGFVRQARIVPPTSQNQAQMEADMRAS 387
Query: 376 QLA--DV---------SAILGSLDIVFGE 393
L D + + + D
Sbjct: 388 ILESLDFDDEALRLRLESGIRNYDPCISC 416
>gi|148643059|ref|YP_001273572.1| methyl viologen-reducing hydrogenase, alpha subunit, MvhA
[Methanobrevibacter smithii ATCC 35061]
gi|148552076|gb|ABQ87204.1| methyl viologen-reducing hydrogenase, alpha subunit, MvhA
[Methanobrevibacter smithii ATCC 35061]
Length = 474
Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats.
Identities = 64/439 (14%), Positives = 123/439 (28%), Gaps = 66/439 (15%)
Query: 20 AHGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ ++LD + V H+ + RG EK ++ + + R+ + +
Sbjct: 12 IEGHAKITVQLDDDGNVVDTRLHV-MEFRGFEKFLQGRPVEELARIVPRICGICDVQHHL 70
Query: 79 AYALAVEKLLGIE---IPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV------------ 123
A A AV+++ G E I +R + + + SH L+ A
Sbjct: 71 AAAKAVDQIFGFEDEKILPTAYKMREIMNWGSFMHSHALHFYFLAAPDLIIPDGTRKTRN 130
Query: 124 ------GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWC 177
L E R + + G +H PGG+ ++ E +D+
Sbjct: 131 VFQIIKDQPEIALQAIELRRNGLEIVRKIGGRPIHPISSTPGGISTELDDETQKDLLQRA 190
Query: 178 DSFPSALNDISDLLTG-NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSG-AAWDLRKSQ 235
DL ++G G GV +G
Sbjct: 191 QRNVELAQATLDLAKPIFEEKIDLVNSLGYFGDTRHCGLVNDGVWDVYNGDVRIKDVDGS 250
Query: 236 PYECYSELDFDIPIGKHGDCYDRYLVRM----------------------MEMRESVKII 273
Y Y L++ + +H Y +M ++ +
Sbjct: 251 IYTEYKNLEYKDVVAEHVKPYSWLKFPYIKELGYPEGIYRVAPLSRINVADKMPDAAPLA 310
Query: 274 RQCVNRLLGKNK--VGPVSASDPKIVPPKRADMKRSMESLIHH--FKLYTEGYHVPVGEV 329
+ K P+ +++ A + + ++L + E GE
Sbjct: 311 QAAFEEFHDKFGYAQAPLLFHWARLIE-LLASAECAADALDQDLSGPKFPEELERTAGEG 369
Query: 330 YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLC---------KGHQLAD- 379
VEA +G D I + AME G ++ D
Sbjct: 370 AGIVEAARGTLIHNYACDDNGLVTEANIVVATIQNNPAMEMGIQQVAKDYIKPGVEVDDK 429
Query: 380 ----VSAILGSLDIVFGEV 394
+ ++ + D
Sbjct: 430 IFNLMEMVIRAYDPCLSCA 448
>gi|134045693|ref|YP_001097179.1| F420-non-reducing hydrogenase subunit A [Methanococcus maripaludis
C5]
gi|132663318|gb|ABO34964.1| F420-non-reducing hydrogenase subunit A [Methanococcus maripaludis
C5]
Length = 471
Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats.
Identities = 62/436 (14%), Positives = 126/436 (28%), Gaps = 62/436 (14%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ L D +++V+ H+ + RG EK +E + A + R+ + ++
Sbjct: 12 VEGHGKVTLSFDDSGKLDKVNFHVVEV-RGFEKFLEGRYVEDASVFTPRICGICQVSHNL 70
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFE---- 134
A A AV+ + G++IP ++R L + + SH L+ A +
Sbjct: 71 ASARAVDNVFGVKIPKTADMLRNLMQQASNVHSHALHFGMLASPDLMFPMTDDALKRNVL 130
Query: 135 ---------------EREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
R+ ++ G +H GG + + E +++ +
Sbjct: 131 GVAAENMDVVKDAISMRKIGQTIIQKVGGKAIHPVTAVVGGQSKPLTEEERDELLKMSED 190
Query: 180 FPSALNDIS----DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG------VMIRGSG--- 226
LL G + ++ G ++ G
Sbjct: 191 LVDTAERTLIVGKQLLEGLKEQDLLDLGYFESYHMGMVNNGAQDIYEGKIRVVNPEGKIE 250
Query: 227 AAWDLRKSQPYE-----CYSELDFDIPIG-------KHGDCYDRYLVRMMEMRESVKIIR 274
+D + Y YS L F + R V +
Sbjct: 251 YEYDPSEYLNYMSEGVRPYSYLKFPYLTEKGPVDGVYRVNTLSRLNVCDRMPTPIAQKYY 310
Query: 275 QCVNRLLGKNKVGPVSASDPKIVPP--KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAA 332
+ + GK P+ +++ +++ +E VGE
Sbjct: 311 EEFVKTFGKPAHQPMLFHYARLIEIVSSAELIRQFLEDDTIVGTDIRAEPTDLVGEGVGC 370
Query: 333 VEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM--------------EFLCKGHQLA 378
+EAP+G + +D + + AM K H L
Sbjct: 371 LEAPRGTLVHHFKTDDKGIITDANLVVATVQNNPAMDIGVQKVAEKYIKTPEDAKPHVLN 430
Query: 379 DVSAILGSLDIVFGEV 394
+ ++ + D
Sbjct: 431 HMEMVIRAYDPCLSCA 446
>gi|38637756|ref|NP_942730.1| NAD-reducing hydrogenase hydrogenase moiety large subunit
[Ralstonia eutropha H16]
gi|57015355|sp|P22320|HOXH_RALEH RecName: Full=NAD-reducing hydrogenase hoxS subunit beta
gi|32527094|gb|AAP85844.1| NAD-reducing hydrogenase hydrogenase moiety large subunit
[Ralstonia eutropha H16]
Length = 488
Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats.
Identities = 58/454 (12%), Positives = 124/454 (27%), Gaps = 83/454 (18%)
Query: 20 AHGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++++ LD + V H+ + RG EK ++ F +A + R+ + ++
Sbjct: 13 IEGHGKVVVHLDDDNKVVDAKLHV-VEFRGFEKFVQGHPFWEAPMFLQRICGICFVSHHL 71
Query: 79 AYALAVEKL------LGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------- 124
A A++ + GI + + +R L + SH +
Sbjct: 72 CGAKALDDMVGVGLKSGIHVTPTAEKMRRLGHYAQMLQSHTTAYFYLIVPEMLFGMDAPP 131
Query: 125 -----------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDI 173
R+ + G +MH PGGV+ ++ +
Sbjct: 132 AQRNVLGLIEANPDLVKRVVMLRKWGQEVIKAVFGKKMHGINSVPGGVNNNLSIAERDRF 191
Query: 174 GC------WCDSFPSALNDISDLLTGNRIFKQRNVNIG--------TVKLEDAWGWGFSG 219
D D L + V+ + +D + G
Sbjct: 192 LNGEEGLLSVDQVIDYAQDGLRLFYDFHQKHRAQVDSFADVPALSMCLVGDDDNVDYYHG 251
Query: 220 VMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVK-------- 271
+ +R+ ++ F + + YL + + SV+
Sbjct: 252 RLRIIDDDKHIVREFDYHDYLDH--FSEAVEEWSYMKFPYLKELGREQGSVRVGPLGRMN 309
Query: 272 --------IIRQCVNRLLGKNKVG------PVSASDPKIVPPKRADMKRSM--ESLIHHF 315
+ ++ + R K + + + +K + L
Sbjct: 310 VTKSLPTPLAQEALERFHAYTKGRTNNMTLHTNWARAIEILHAAEVVKELLHDPDLQKDQ 369
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME------ 369
+ T + GE VEAP+G + +D + + Q M
Sbjct: 370 LVLTPPPNAWTGEGVGVVEAPRGTLLHHYRADERGNITFANLVVATTQNNQVMNRTVRSV 429
Query: 370 ---------FLCKGHQLADVSAILGSLDIVFGEV 394
+ +G A + + + D
Sbjct: 430 AEDYLGGHGEITEGMMNA-IEVGIRAYDPCLSCA 462
>gi|119385817|ref|YP_916872.1| nickel-dependent hydrogenase, large subunit [Paracoccus
denitrificans PD1222]
gi|119376412|gb|ABL71176.1| nickel-dependent hydrogenase, large subunit [Paracoccus
denitrificans PD1222]
Length = 477
Score = 169 bits (429), Expect = 5e-40, Method: Composition-based stats.
Identities = 66/472 (13%), Positives = 125/472 (26%), Gaps = 94/472 (19%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
GP + G L + L++ V + L+RG E+++ K A+ R+ +
Sbjct: 8 VGPFN-RVEGDLEIRLDIAEGRVSAARINSP-LYRGFERMLPGKDPRDALTIVPRICGIC 65
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL-- 130
++Q A A A+ +G +G+ + L + + HL + M
Sbjct: 66 SISQSAAAARALAMAVGEVPEPQGERMAALIHAVENVSDHLTHFNLFFMPDFTRPQYQAR 125
Query: 131 -------------------WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
E R LM +G H +PGGV +
Sbjct: 126 GWYDRAVARFTAMEGSALKRAVEARAGLMHVLGLMAGKWPHTLAIQPGGVTRAPSERDRL 185
Query: 172 DIGCWCDSFPSALNDIS-------------------------DLLTGNRIFKQRNV-NIG 205
I +F L D L G
Sbjct: 186 RILASLTAFRRYLEDTVFGAAVEDFAALSSVPALMGWQGGDAGLFLRIAADLNLADLGCG 245
Query: 206 TVKLEDAWGWGFSGVMIRGSGAAW------------------DLRKSQPYECYSELDFDI 247
+ + + G G + + D D
Sbjct: 246 SGRYLSFGAYPLEGGHGFAPGIWDGGAQPLDIAAISEDLSHSWMLGPAAHPAQGVTDPDE 305
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL------GKNKVGPVSASDPKIVPPKR 301
+ + + E+ + RQ ++ G ++ +++ R
Sbjct: 306 DMRDTAYSWCKAPRLAGRTMETGALARQVIDGHPLALDLVRDGGGGVLARVAGRLLELAR 365
Query: 302 AD--MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
+ M+ ++ + + G VEA +G G +L G + +I A
Sbjct: 366 SQVLMEDLARGIVPEARFMAGPLKISDGIGEGLVEAARGALGHWLRI-EGGRIASYQIVA 424
Query: 360 PGYAHLQ---------AMEFLCKG--------HQLADVSAILGSLDIVFGEV 394
P + +E +G L+ V ++ S D
Sbjct: 425 PTTWNFSPRDAGGVPGPVEAALEGLVVQPGETTPLS-VQHVVRSFDPCMVCT 475
>gi|199594748|gb|ACH90838.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594800|gb|ACH90864.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594806|gb|ACH90867.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|301318198|gb|ADK67014.1| NADH dehydrogenase [Stenotrophomonas maltophilia]
gi|301318200|gb|ADK67015.1| NADH dehydrogenase [Stenotrophomonas maltophilia]
gi|301318202|gb|ADK67016.1| NADH dehydrogenase [Stenotrophomonas maltophilia]
gi|301318210|gb|ADK67020.1| NADH dehydrogenase [Stenotrophomonas maltophilia]
gi|301318218|gb|ADK67024.1| NADH dehydrogenase [Stenotrophomonas maltophilia]
Length = 148
Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats.
Identities = 91/148 (61%), Positives = 115/148 (77%)
Query: 17 HPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQ 76
HPAAHGVLRLILE+DGE + R DPH+GLLHRGTEKL E+K F Q++ Y DRLDYV+ M
Sbjct: 1 HPAAHGVLRLILEMDGETIMRADPHVGLLHRGTEKLAESKPFNQSIGYMDRLDYVSMMCN 60
Query: 77 EHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEER 136
EHAY ++E L+GIE P R Q IR L+ EI RIL+HL+ + + A+D+GA+ L+ F ER
Sbjct: 61 EHAYVRSIETLMGIEAPERAQYIRTLFDEITRILNHLMWLGSNALDLGAMAVMLYAFRER 120
Query: 137 EKLMVFYERASGSRMHAAYFRPGGVHQD 164
E+LM YE SG+RMHAAY+RPGGV++D
Sbjct: 121 EELMDCYEAVSGARMHAAYYRPGGVYRD 148
>gi|307824843|ref|ZP_07655066.1| nickel-dependent hydrogenase large subunit [Methylobacter
tundripaludum SV96]
gi|307734201|gb|EFO05055.1| nickel-dependent hydrogenase large subunit [Methylobacter
tundripaludum SV96]
Length = 499
Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats.
Identities = 59/441 (13%), Positives = 131/441 (29%), Gaps = 69/441 (15%)
Query: 20 AHGVLRLILELD-GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ L LD V++ HI + RG E+ I+ + + + RL + P++
Sbjct: 25 VEGHGKVTLLLDADNKVQQARLHI-VEFRGFERFIQGRPYWELPVLVQRLCGICPVSHHL 83
Query: 79 AYALAVEKLLGIEI---PIRGQLIRVLYSEIGRILSHLLNVTTQAMDV------------ 123
A A A+++L+GI+ P+ +R L + SH L+ +
Sbjct: 84 AAAKAIDQLVGIDPENLPVSADKLRRLLHFGQVLQSHALHFFHLSSPDLLFGFESDISKR 143
Query: 124 -------GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCW 176
+ G + R+ SG R+H GG+++ + + +
Sbjct: 144 SIVAVLSEYPEIGVQGVKLRKYGQEVIRMVSGKRIHGTGAIAGGMNKSLTKAERDYLLED 203
Query: 177 CDSFPSALNDISDLLTGNRI-FKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKS- 234
D + L+ + T++ G + G +
Sbjct: 204 IDQMITWAEGSVALIKKVHCSNLPYYDDFATIRTNYLGLTKPDGALELYHGGIRAKNEHG 263
Query: 235 ---QPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRL----------- 280
+ Y + + I Y ++ + +E + R+
Sbjct: 264 ETIMDHIDYCKYNDYIHEEVRSWTYMKFPYLLSLGQEQGWYRVGPLARVNNCDYIDTPLA 323
Query: 281 -----------LGKNKVGPVSASDPKIVP--PKRADMKRSMESL-IHHFKLYTEGYHVPV 326
++ +++ +K+ + I L +G
Sbjct: 324 EAARVEFKAHSGEAMVHSTLAFHWTRLIEVLHCAESIKQLLNDPDIMGSDLVAQGEKRY- 382
Query: 327 GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK--------GHQLA 378
E +EAP+G + D + + + ++ AM + G +L
Sbjct: 383 -EGVGVIEAPRGTLFHHYQVDENDIVTKANLIVSTTSNNMAMNESVRQVAAEYLSGRELT 441
Query: 379 -----DVSAILGSLDIVFGEV 394
++ + + D
Sbjct: 442 EPLLNNLEVAIRAYDPCLSCA 462
>gi|199594738|gb|ACH90833.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594794|gb|ACH90861.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594796|gb|ACH90862.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|301318208|gb|ADK67019.1| NADH dehydrogenase [Stenotrophomonas maltophilia]
gi|301318214|gb|ADK67022.1| NADH dehydrogenase [Stenotrophomonas maltophilia]
gi|301318224|gb|ADK67027.1| NADH dehydrogenase [Stenotrophomonas chelatiphaga]
Length = 148
Score = 169 bits (428), Expect = 7e-40, Method: Composition-based stats.
Identities = 91/148 (61%), Positives = 115/148 (77%)
Query: 17 HPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQ 76
HPAAHGVLRLILE+DGE + R DPH+GLLHRGTEKL E+K F Q++ Y DRLDYV+ M
Sbjct: 1 HPAAHGVLRLILEMDGETIMRADPHVGLLHRGTEKLAESKPFNQSIGYMDRLDYVSMMCN 60
Query: 77 EHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEER 136
EHAY A+E L+GIE P R Q IR ++ EI RIL+HL+ + + A+D+GA+ L+ F ER
Sbjct: 61 EHAYVRAIETLMGIEAPERAQYIRTMFDEITRILNHLMWLGSNALDLGAMAVMLYAFRER 120
Query: 137 EKLMVFYERASGSRMHAAYFRPGGVHQD 164
E+LM YE SG+RMHAAY+RPGGV++D
Sbjct: 121 EELMDCYEAVSGARMHAAYYRPGGVYRD 148
>gi|183983480|ref|YP_001851771.1| coenzyme F420-reducing hydrogenase, alpha subunit [Mycobacterium
marinum M]
gi|183176806|gb|ACC41916.1| coenzyme F420-reducing hydrogenase, alpha subunit [Mycobacterium
marinum M]
Length = 430
Score = 169 bits (428), Expect = 7e-40, Method: Composition-based stats.
Identities = 48/403 (11%), Positives = 110/403 (27%), Gaps = 29/403 (7%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + L ++RV+ +I R E + + + R+ + P+ + +
Sbjct: 16 VEGEGALYVSLKDGELDRVELNIYEPPRFFEAFLRGRAHTEPPDLTARICGICPVAYQVS 75
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP----------- 128
A+E G+E+ +R L I SH+L++ P
Sbjct: 76 ACNALEGACGVELDADLIELRRLLYCGEWIHSHVLHICLLHAPDFLGYPDAIAFARDERE 135
Query: 129 -PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
G ++ E G +H R GG + +
Sbjct: 136 IVERGLRLKKAGNQLMEFVGGRAIHPINVRLGGFYSVPTRSDFAPMAEQLRRALDDALAT 195
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ + G + +G + R +G + + + + ++
Sbjct: 196 VEWVAGFEFPDLEFDHEFLALTTPDRYPIENGTIARSAGPVFPVDEFTDHVVELQVPHST 255
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
+ D + + ++ + + + + + + + ++ +
Sbjct: 256 ALHATLDGGCHVTGPLARYALNSSLLTPIAAQAAARAGLSAQCRNPFRSIIVRAVEVVYA 315
Query: 308 MESLIHHFKLYTEGYHV------PVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+E + + Y G + EAP+G D I P
Sbjct: 316 IEEALRIIENYQRPARPFVEVPARAGVGHGVSEAPRGLLYHRYRIDDAGLVSAATIIPPT 375
Query: 362 YAHLQAMEFLC-----KGHQLAD------VSAILGSLDIVFGE 393
+ A+E + L D + + D
Sbjct: 376 SQNQAAIEADLARVVSENLALDDEVLTTMCERAIRNYDPCISC 418
>gi|119484424|ref|ZP_01619041.1| Nickel-dependent hydrogenase, large subunit [Lyngbya sp. PCC 8106]
gi|119457898|gb|EAW39021.1| Nickel-dependent hydrogenase, large subunit [Lyngbya sp. PCC 8106]
Length = 537
Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats.
Identities = 70/503 (13%), Positives = 122/503 (24%), Gaps = 130/503 (25%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + +++ V L RG E ++ K + R+ + +
Sbjct: 19 VEGDLDVRVDIQDGQVVNA-WTQAQLFRGFEVILRGKDPQAGLIVTPRICGICGASHLTC 77
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV---------------- 123
+ A++ E+P L R L + I SH
Sbjct: 78 ASWALDTAWETEVPRNAILARNLGQLVETIQSHPRYFYGLFAIDLTNKKYQNSPFYEEAC 137
Query: 124 -----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
G K + Y G H+++ PGGV + +
Sbjct: 138 RRFSAYTGKSYEIGVTISAKPVEIYALFGGQWPHSSFMVPGGVMCAPTLTDITRAWSILE 197
Query: 179 SFPSAL-------------------NDISDLLTGNRIF-----------------KQRNV 202
F + +D D L + + +
Sbjct: 198 YFRTNWLEPVWLGCSLERYEEIQSYDDFMDWLNESPNHLNSDLGFYWRMGLDIGLDKFGM 257
Query: 203 NIGTVKLEDAWGW----------GFSGVMIRGSGA------------AWDLRKSQPYECY 240
G G +G +I SG R++ + Y
Sbjct: 258 GTGKYMTWGYLPHEDKYQRPTIAGRNGAVIMKSGVYDSFSDTHQLMEHHFTRENTTHAWY 317
Query: 241 SELDFDIPIGKH---------------GDCYDRYLVRMMEMR-ESVKIIRQCVNRLLGKN 284
E + D+ + + R E + RQ V
Sbjct: 318 EEGNEDVHPFDRFTVPQQNNDVNFQDGAYTWGTAVKHQDFGRMEVGSLSRQLVAGGRHGE 377
Query: 285 K---------------VGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP---V 326
GP ++ + R +E + FKL Y P
Sbjct: 378 SWQHYDGFILDMFKKMGGPSVHLRQLARMHEQVKLYREVERCLREFKLRDPWYIKPTQKD 437
Query: 327 GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQL 377
G + A EA +G ++ K ++ AP ++ +E G +
Sbjct: 438 GRGWGATEASRGALCHWVEV-EDGKIKNYQVIAPSTWNIGPRDGEGIRGPIEEALIGTPI 496
Query: 378 AD------VSAILGSLDIVFGEV 394
AD V + S D
Sbjct: 497 ADKNDPVEVGHVARSFDSCLVCT 519
>gi|58042472|gb|AAW63675.1| NADH dehydrogenase subunit 7 [Laurus nobilis]
Length = 188
Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats.
Identities = 111/188 (59%), Positives = 137/188 (72%)
Query: 37 RVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRG 96
R +PHIG LHRG+EKLIE KT LQA+PY DR DYV+ M QEHA++ AVE+LL E+P+R
Sbjct: 1 RAEPHIGSLHRGSEKLIEYKTTLQALPYSDRSDYVSTMAQEHAHSSAVERLLNCEVPLRA 60
Query: 97 QLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYF 156
Q IRVL+ EI RI +H L TT AMDVGA TP LW EEREKL+ F+ER G+RMHA++
Sbjct: 61 QYIRVLFREITRISNHSLASTTHAMDVGASTPFLWASEEREKLLEFHERVPGARMHASFI 120
Query: 157 RPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWG 216
RPGGV QD+P DI F S +++ ++ TGNRI+KQR V+IGTV + A WG
Sbjct: 121 RPGGVAQDLPLGSCRDIDSSTQQFASRIDESEEMSTGNRIWKQRLVDIGTVTAQQAKDWG 180
Query: 217 FSGVMIRG 224
FSGVM+RG
Sbjct: 181 FSGVMLRG 188
>gi|312138944|ref|YP_004006280.1| nickel-dependent hydrogenase [Rhodococcus equi 103S]
gi|325673780|ref|ZP_08153471.1| Ni-dependent hydrogenase large subunit [Rhodococcus equi ATCC
33707]
gi|311888283|emb|CBH47595.1| putative nickel-dependent hydrogenase [Rhodococcus equi 103S]
gi|325555801|gb|EGD25472.1| Ni-dependent hydrogenase large subunit [Rhodococcus equi ATCC
33707]
Length = 439
Score = 168 bits (427), Expect = 9e-40, Method: Composition-based stats.
Identities = 53/404 (13%), Positives = 100/404 (24%), Gaps = 29/404 (7%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G RL + + VE I R E + + F + R+ + P+ + +
Sbjct: 25 VEGEGRLDVTVRSGAVEHARLDIYEPPRFFEAFLRGRDFREPPDITSRICGICPVAYQVS 84
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG------------ALT 127
A+E+ G + R + +R L I SH L++
Sbjct: 85 ACNALEQACGAIVDPRVRALRRLLYCGEWIASHTLHIYFLHAPDFLGVADSIELARRDRA 144
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
G ++ E G +H R GG ++ + + + D
Sbjct: 145 AVERGLALKKAGNAILETIGGRPIHPVDVRVGGFYRAPTRDELAPLARTLRRALDHALDT 204
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ G + +DA GV+ +G + + + ++
Sbjct: 205 VRWVAGFDFPDVHLDPVLAALHDDAGYAIEDGVVRTSAGDRFPAAEFGDHVRERQVPEST 264
Query: 248 PIGKHGD-CYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ D S ++ + IV
Sbjct: 265 ALHARLDGAPYLTGPLARYSLNSGQLTGAARDAASAAGLGRECRNPFRSIVVRSVEVTFA 324
Query: 307 SMESLIHHFKLYTE-----GYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
E+L + EAP+G I P
Sbjct: 325 IEEALRIIDGYERPDPPCAPVTARAATGHGVSEAPRGLLYHRYELAADGTIRSADIVPPT 384
Query: 362 YAHLQAMEFLC---KGHQ--LAD------VSAILGSLDIVFGEV 394
+ +E G L+D I+ + D
Sbjct: 385 AQNQDVIEADLTARIGEHLGLSDQELTALCERIIRNHDPCISCA 428
>gi|296109069|ref|YP_003616018.1| nickel-dependent hydrogenase large subunit [Methanocaldococcus
infernus ME]
gi|295433883|gb|ADG13054.1| nickel-dependent hydrogenase large subunit [Methanocaldococcus
infernus ME]
Length = 414
Score = 168 bits (427), Expect = 9e-40, Method: Composition-based stats.
Identities = 54/403 (13%), Positives = 107/403 (26%), Gaps = 56/403 (13%)
Query: 20 AHGVLRLILEL-DGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + + +GE R+ RG EK + + + R+ + +
Sbjct: 12 LEGHGKVTITVAEGEPEVRLHIV---ALRGFEKFVVGRPAEEVPRIVPRICGICQVPHHL 68
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA------------- 125
A A++ E+P +L+R L I SH L+ A
Sbjct: 69 AAVKAIDMAWNAEVPETAKLLRELMLLGNMIHSHALHFYFLASPDFILGVDADPSIRNIV 128
Query: 126 ------LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
R G +H PGG+ + + E +++ D+
Sbjct: 129 GVIEKEPELAKQAIALRRFGQKIVSFVGGKPIHPITGIPGGISKKLSEEERDELLKEIDT 188
Query: 180 FPSALNDISD----LLTGNRIFKQ----RNVNIGTVKLEDAWGWGFSGVMIRGSG----- 226
+ + +L N+ + +G VK + + + + G
Sbjct: 189 IIEYSKNAVEVVKSILEKNKELLKLGTIDTWYLGLVKNGEHEFYDGTLRFLSPDGKEKVE 248
Query: 227 --------------AAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKI 272
K Y+ D +G + E K
Sbjct: 249 FEAKDYLDYIGEHIVPHSYVKYPFYKKAGYPDGIYRVGPLAMLNVCDSMGTEIAEEYRKE 308
Query: 273 IRQCVNRLLGKNKVGPVSASDPKIVP--PKRADMKRSMESLIHHFKLYTEGYHVPVGEVY 330
++ +++ +K+ +E+ G
Sbjct: 309 YL----NTYEFPVKASLAYHHARMIELVAAAEKVKKLLENDKIVGDDIKAEVEPKAGWGV 364
Query: 331 AAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK 373
VEAP+G +D + + + AME K
Sbjct: 365 GIVEAPRGILIHNYETDENGIVVKGNMIVASTHNTPAMELAIK 407
>gi|170290732|ref|YP_001737548.1| coenzyme F420-reducing hydrogenase, alpha subunit [Candidatus
Korarchaeum cryptofilum OPF8]
gi|170174812|gb|ACB07865.1| Coenzyme F420-reducing hydrogenase, alpha subunit [Candidatus
Korarchaeum cryptofilum OPF8]
Length = 489
Score = 168 bits (427), Expect = 9e-40, Method: Composition-based stats.
Identities = 67/448 (14%), Positives = 121/448 (27%), Gaps = 74/448 (16%)
Query: 20 AHGVLRLILELD-GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ ++LD V+R I L RG EK + +T A R+ V P
Sbjct: 15 LEGHGKITIKLDENGNVKRALLQIPEL-RGFEKFLVGRTVEDAPQITSRICGVCPWAHHM 73
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP---------- 128
A A++ L ++ P+ +LIR + + H L+ + P
Sbjct: 74 AATKALDDLFKVDPPLTAKLIREFVYNVFMLEDHSLHFYVLGGPDFLVGPKAPKEERNLV 133
Query: 129 ----------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
R+KL + G H PGGV + + E +
Sbjct: 134 GIIRKLGADIVKNIIVTRKKLRYLEQLIGGKITHPVLGLPGGVAKPLSDEDWKLCYETTK 193
Query: 179 SFPSALNDIS----DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG----------VMIRG 224
DL+ N + + + G G ++
Sbjct: 194 EGIEFAKFAYRALKDLVLSNDEYVELMRSDIYTHRTYYMGLVDQGNNVNFYDGKIRVVDP 253
Query: 225 SGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRY-LVRMMEMRESVKIIRQCVNR---- 279
G + ++ Y + D + R ++ RES + R
Sbjct: 254 EGKEFAKFGAREYLDHIAEDVEPWSYVRFTYLRRVGWKGFIDGRESGIYSVAPLARLNAS 313
Query: 280 ------------------LLGKNKVGPVSASDPKIVPP--KRADMKRSMESLIHHFKLYT 319
+ GK ++ ++V M +E+ K
Sbjct: 314 DGMATPMANELYKEFYQAMGGKPVHNTLAFHWARVVEMVYAAERMMELIENPEIKRKEVR 373
Query: 320 EGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ--------AMEFL 371
VEAP+G + +D + + + A + L
Sbjct: 374 NIPKEKPDVGIGVVEAPRGTLIHHYETDEKGIIKKANLIVATQNNSARMVLSVEKAAKSL 433
Query: 372 CKGHQLAD-----VSAILGSLDIVFGEV 394
K ++ D V + D
Sbjct: 434 IKNGKVDDGILNMVEMAFRAYDPCHACA 461
>gi|199594672|gb|ACH90800.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594674|gb|ACH90801.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594676|gb|ACH90802.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594678|gb|ACH90803.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594680|gb|ACH90804.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594682|gb|ACH90805.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594684|gb|ACH90806.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594686|gb|ACH90807.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594688|gb|ACH90808.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594690|gb|ACH90809.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594692|gb|ACH90810.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594694|gb|ACH90811.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594696|gb|ACH90812.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594698|gb|ACH90813.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594700|gb|ACH90814.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594702|gb|ACH90815.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594704|gb|ACH90816.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594706|gb|ACH90817.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594708|gb|ACH90818.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594710|gb|ACH90819.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594712|gb|ACH90820.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594714|gb|ACH90821.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594716|gb|ACH90822.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594718|gb|ACH90823.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594720|gb|ACH90824.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594722|gb|ACH90825.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594724|gb|ACH90826.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594726|gb|ACH90827.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594728|gb|ACH90828.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594730|gb|ACH90829.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594732|gb|ACH90830.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594734|gb|ACH90831.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594736|gb|ACH90832.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594740|gb|ACH90834.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594742|gb|ACH90835.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594746|gb|ACH90837.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594752|gb|ACH90840.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594754|gb|ACH90841.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594760|gb|ACH90844.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594762|gb|ACH90845.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594764|gb|ACH90846.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594766|gb|ACH90847.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594768|gb|ACH90848.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594770|gb|ACH90849.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594772|gb|ACH90850.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594774|gb|ACH90851.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594776|gb|ACH90852.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594778|gb|ACH90853.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594780|gb|ACH90854.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594782|gb|ACH90855.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594784|gb|ACH90856.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594786|gb|ACH90857.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594790|gb|ACH90859.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594792|gb|ACH90860.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594808|gb|ACH90868.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594810|gb|ACH90869.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|301318194|gb|ADK67012.1| NADH dehydrogenase [Pseudoxanthomonas dokdonensis]
gi|301318196|gb|ADK67013.1| NADH dehydrogenase [Stenotrophomonas maltophilia]
gi|301318206|gb|ADK67018.1| NADH dehydrogenase [Stenotrophomonas maltophilia]
Length = 148
Score = 168 bits (427), Expect = 9e-40, Method: Composition-based stats.
Identities = 92/148 (62%), Positives = 115/148 (77%)
Query: 17 HPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQ 76
HPAAHGVLRLILE+DGE + R DPH+GLLHRGTEKL E+K F Q++ Y DRLDYV+ M
Sbjct: 1 HPAAHGVLRLILEMDGETIMRADPHVGLLHRGTEKLAESKPFNQSIGYMDRLDYVSMMCN 60
Query: 77 EHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEER 136
EHAY A+E L+GIE P R Q IR +Y EI RIL+HL+ + + A+D+GA+ L+ F ER
Sbjct: 61 EHAYVRAIETLMGIEAPERAQYIRTMYDEITRILNHLMWLGSNALDLGAMAVMLYAFRER 120
Query: 137 EKLMVFYERASGSRMHAAYFRPGGVHQD 164
E+LM YE SG+RMHAAY+RPGGV++D
Sbjct: 121 EELMDCYEAVSGARMHAAYYRPGGVYRD 148
>gi|87245258|gb|ABD34838.1| HupL [Lyngbya aestuarii]
Length = 537
Score = 168 bits (427), Expect = 9e-40, Method: Composition-based stats.
Identities = 70/503 (13%), Positives = 121/503 (24%), Gaps = 130/503 (25%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + +++ V L RG E ++ K + R+ + +
Sbjct: 19 VEGDLDVRVDIQDGQVVNA-WTQAQLFRGFEVILRGKDPQAGLIVTPRICGICGASHLTC 77
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV---------------- 123
+ A++ E+P L R L + I SH
Sbjct: 78 ASWALDTAWETEVPRNAILARNLGQLVETIQSHPRYFYGLFAIDLTNKKYQNSPFYEEAC 137
Query: 124 -----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
G K + Y G H+++ PGGV + +
Sbjct: 138 RRFSAYTGKSYEIGVTISAKPVEIYALFGGQWPHSSFMVPGGVMCAPTLTDITRAWSILE 197
Query: 179 SFPSAL-------------------NDISDLLTGNRIF-----------------KQRNV 202
F + +D D L + + +
Sbjct: 198 YFRTNWLEPVWLGCSLERYEEIQSYDDFMDWLNESPNHLNSDLGFYWRMGLDIGLDKFGM 257
Query: 203 NIGTVKLEDAWGW----------GFSGVMIRGSGA------------AWDLRKSQPYECY 240
G G +G +I SG R++ + Y
Sbjct: 258 GTGKYMTWGYLPHEDKYQRPTIAGRNGAVIMKSGVYDSFSDTHQLMEHHFTRENTTHAWY 317
Query: 241 SELDFDIPIGKH---------------GDCYDRYLVRMMEMR-ESVKIIRQCVNRLLGKN 284
E + D+ + + R E + RQ V
Sbjct: 318 EEGNEDVHPFDRFTVPQQNNDVNFQDGAYTWGTAVKHQDFGRMEVGSLSRQLVAGGRHGE 377
Query: 285 K---------------VGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP---V 326
GP ++ + R E + FKL Y P
Sbjct: 378 SWQHYDGFILDMFKKMGGPSVYLRQLARMHEQVKLYREAERCLREFKLRDPWYIKPTQKD 437
Query: 327 GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQL 377
G + A EA +G ++ K ++ AP ++ +E G +
Sbjct: 438 GRGWGATEASRGALCHWVEV-EDGKIKNYQVIAPSTWNIGPRDGEGIRGPIEEALIGTPI 496
Query: 378 AD------VSAILGSLDIVFGEV 394
AD V + S D
Sbjct: 497 ADKNDPVEVGHVARSFDSCLVCT 519
>gi|15004845|ref|NP_149305.1| periplasmic hydrogenase large subunit, dehydrogenase [Clostridium
acetobutylicum ATCC 824]
gi|14994457|gb|AAK76887.1|AE001438_140 Periplasmic hydrogenase large subunit, dehydrogenase [Clostridium
acetobutylicum ATCC 824]
gi|325511289|gb|ADZ22924.1| Periplasmic hydrogenase large subunit, dehydrogenase [Clostridium
acetobutylicum EA 2018]
Length = 471
Score = 168 bits (427), Expect = 9e-40, Method: Composition-based stats.
Identities = 55/437 (12%), Positives = 106/437 (24%), Gaps = 71/437 (16%)
Query: 27 ILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEK 86
+E+ ++ + GLL RG EK+++T+ L A+ + +R+ + A LA+E
Sbjct: 20 KVEVTESVITNAE-TSGLLFRGFEKMLKTRQPLDAIYFTERICGICSTAHAMASTLALED 78
Query: 87 LLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT------------------- 127
L + + I +R L + +H+ +
Sbjct: 79 ALKVSVSINDLYVRDLIHSFEFMQNHIRQFYNLTVPSYVRMSKLDPLYSNQYSDYRLPNY 138
Query: 128 -------PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVED-------- 172
L G H+ GGV I +
Sbjct: 139 ENEIISKHSLESINYSRLAHEGLALFGGKAPHSHGIFVGGVTTSIDSYKLVKAKSIISSL 198
Query: 173 ---IGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGV--MIRGSGA 227
I + + ++ G + MI
Sbjct: 199 KVFINNIMLEDMNTIAKYYSDYFNMGETYNNFMSYGLFDHYKDPEISYVSPSVMINYKKQ 258
Query: 228 AWDLRKSQP---YECY-----------SELDFDIPIGKHGDCYDRYLVRMMEMRESVKII 273
++D K + Y D K G + + E +
Sbjct: 259 SFDKNKITENILHSWYVSDTENEKPSNESADNIDLNKKQGYSFIKSPNYDGYPMEVGPLA 318
Query: 274 RQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP-VGEVYAA 332
R ++ + K + + I + Y +P
Sbjct: 319 RMILSGDYKGKSSCMDRNVARVLEAKKIISIMEKLADKIELLPNSQKTYDIPINAFGAGL 378
Query: 333 VEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA---------MEFLCKGHQLADVS-- 381
+ +G G ++ I P ++ E G +L +V
Sbjct: 379 TDTTRGALGHWIKI-ENKLIKYYNIITPTVWNMSPKNEKGAFGVGEKSLVGTKLKNVQEP 437
Query: 382 ----AILGSLDIVFGEV 394
I+ S D
Sbjct: 438 VEVGRIMRSFDPCVSCA 454
>gi|169831802|ref|YP_001717784.1| nickel-dependent hydrogenase, large subunit [Candidatus
Desulforudis audaxviator MP104C]
gi|169638646|gb|ACA60152.1| nickel-dependent hydrogenase, large subunit [Candidatus
Desulforudis audaxviator MP104C]
Length = 485
Score = 168 bits (427), Expect = 1e-39, Method: Composition-based stats.
Identities = 64/450 (14%), Positives = 123/450 (27%), Gaps = 78/450 (17%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + L+ VE + L RG EK E + Q R+ V P
Sbjct: 12 LEGHGKIEIFLNDAGGVENCYFQVPEL-RGFEKFCEGRPADQVPQIVSRICGVUPAAHHL 70
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP--------- 129
A A++ + G+E + +R LY + SH+ + A + P
Sbjct: 71 ASGKAMDMVFGVEPTPAAKKLRELYYSAHMVHSHIAHFYALAAPDFVMGPDADPAVRNVL 130
Query: 130 -----------LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
+ R G H A+ PGGV + + + + +
Sbjct: 131 GVIGKVGLEIGGEVIKHRAYGQQIQAMLGGKATHPAWTLPGGVSKGLTEDERKQVVEMAK 190
Query: 179 SFPSALNDISDLLTGNRIFKQRNVN--IGTVKLEDAWGWGFS------------------ 218
S L + Q V+ +G + + G
Sbjct: 191 SCVEFAKFSLKLFDDVVLANQAYVDLIVGDIFRLETNYMGLVDENNKINFYEGKVRVVDT 250
Query: 219 --------GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCY------DRYLVRMM 264
G A + + Y Y L G
Sbjct: 251 EGKELFKYGPREYVDYVA-EHVEPYSYLKYPYLKKFGWTGFVEGPGTAIYQAAPLGRINA 309
Query: 265 EMRESVKIIRQCVNRL---LGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEG 321
+ + ++ + LG+ ++ ++V A +R +E + +
Sbjct: 310 CDGMATPLAQEAYEKFISVLGRPTHAVLATHWARLVELMYAA-ERLLELALDEEITSPDI 368
Query: 322 YHVPVG---EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK----- 373
++P G E +EAP+G + +D + + + + K
Sbjct: 369 RNIPTGTPKEGVGIIEAPRGTLTHHYATDPNGIVVKANLIVGTTNNNAPISMAIKKAAMG 428
Query: 374 ----GHQLAD-----VSAILGSLDIVFGEV 394
G ++ + V + D F
Sbjct: 429 VIKPGVEITNGLLNMVEMAFRAYDPCFSCA 458
>gi|301318190|gb|ADK67010.1| NADH dehydrogenase [Stenotrophomonas humi]
Length = 148
Score = 168 bits (427), Expect = 1e-39, Method: Composition-based stats.
Identities = 88/148 (59%), Positives = 112/148 (75%)
Query: 17 HPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQ 76
HPAAHGVLRLILE+DGE + R DPHIGLLHR TEKL E+K + Q+V Y DRLDY + M
Sbjct: 1 HPAAHGVLRLILEMDGETIVRADPHIGLLHRATEKLAESKPYNQSVGYMDRLDYCSMMCN 60
Query: 77 EHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEER 136
EHAY A+E L+GIE P R Q IR ++ E+ RIL+HL+ + + +D+GA+ L+ F ER
Sbjct: 61 EHAYVRAIETLVGIEAPERAQYIRTMFDEVTRILNHLMWLGSNGLDLGAMAVMLYAFRER 120
Query: 137 EKLMVFYERASGSRMHAAYFRPGGVHQD 164
E+LM YE SG+RMHAAY+RPGGV++D
Sbjct: 121 EELMDCYEAVSGARMHAAYYRPGGVYRD 148
>gi|297568501|ref|YP_003689845.1| nickel-dependent hydrogenase large subunit [Desulfurivibrio
alkaliphilus AHT2]
gi|296924416|gb|ADH85226.1| nickel-dependent hydrogenase large subunit [Desulfurivibrio
alkaliphilus AHT2]
Length = 503
Score = 168 bits (427), Expect = 1e-39, Method: Composition-based stats.
Identities = 65/504 (12%), Positives = 120/504 (23%), Gaps = 121/504 (24%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
++ GP G L + ++ +V G + RG E + + L + R+
Sbjct: 1 MQVDIGPIT-RIEGHLNVKTTVENGVVTDARCE-GEMFRGFEIFLRGRDPLDSQQITQRI 58
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL-- 126
V P A + A E +++P G+++ L + +LL+
Sbjct: 59 CGVCPYAHAIASSTAQENAYRLQVPPNGRILHNLIQGANHLYDYLLHFYQLCALDYVDIT 118
Query: 127 TPPLWGFEERE------------------------------------------------- 137
+ ++RE
Sbjct: 119 AVLEYTGKDRELSKVRDWVKAEIDSGKRYPAAPFLPRLSGKYLDNRDANLGAIKNYLEAM 178
Query: 138 ----KLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN-----DIS 188
K G HA PGG Q+ +L+ ++ D+
Sbjct: 179 KMEQKANQAAAIFGGKFPHATAIFPGGCTQEARVDLIVPYQSLIREVRDFIHHKYIPDVL 238
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIR--GSGAAWD----------LRKSQP 236
+ + + G G R G +D +R+
Sbjct: 239 AVAGAFPEYWDIGRSQGGFLSYGHLPLGPEPDSRRLLAPGVMFDGQVEAVDFNQIRQDVG 298
Query: 237 YECY---------SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVG 287
Y P + + ++ E R V+ G N
Sbjct: 299 NAKYSSPSNLRVRDAAITPQPNKRDAYSWIMAPRYAGQVVEVGPAARVMVDYAQGHNPEI 358
Query: 288 PV---------------------SASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV 326
I+ AD + + + P
Sbjct: 359 KKLVDRFAGQAGIQPTQLNSVLGRHLSRAILAAVLADFLLAESQRLQPGQPTMASIDPPA 418
Query: 327 -GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQ 376
E + A EA +G Y+ K + + P + AME G +
Sbjct: 419 SAEGFGATEASRGALLHYIRI-ENYKIAKYECVVPTTWNASPRDDQGQPGAMESALIGTR 477
Query: 377 LADVS------AILGSLDIVFGEV 394
+ + I+ S D
Sbjct: 478 VNNPEEQIESKRIVRSFDPCLACA 501
>gi|73669776|ref|YP_305791.1| coenzyme F420 hydrogenase subunit alpha [Methanosarcina barkeri
str. Fusaro]
gi|2463274|emb|CAA74094.1| F420-reducing hydrogenase isoenzyme I alpha subunit [Methanosarcina
barkeri]
gi|72396938|gb|AAZ71211.1| coenzyme F420 hydrogenase, subunit alpha [Methanosarcina barkeri
str. Fusaro]
Length = 456
Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats.
Identities = 77/424 (18%), Positives = 133/424 (31%), Gaps = 51/424 (12%)
Query: 21 HGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +L L+++ E IVER D RG EKL KT Q R+ + P+ A
Sbjct: 14 EGHSKLTLKVNDEGIVERGDWLSTTPVRGIEKLAIGKTMDQVPKIASRVCGICPIAHTLA 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLN----------------VTTQAMDV 123
A+E +G EIP +L+RV+ R+ SH L+ + + +
Sbjct: 74 GIEAMEASIGCEIPKDAKLLRVILHAANRLHSHALHNILILPDFYIPDTETKINPFSKEQ 133
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS-FPS 182
+ + F RE A G +H + R GG+++++ + I
Sbjct: 134 PLRSVAVRIFRIREIAQTIGAVAGGEAIHPSNPRVGGMYRNVSSRAKQKIADLAKEGLVL 193
Query: 183 ALNDISDLLTGNRIFKQR------------NVNIGTVKLEDAWGWGFSGVMIRGSGAAWD 230
A + ++ R + R +G G WD
Sbjct: 194 AHEQMEFMIEVIRNMQDREFVEVAGKQIPLPKTLGYHNQGVMATAPMYGSSSLDEKPMWD 253
Query: 231 ---LRKSQPYECY------SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL 281
R+++P++ Y D PIG + RM Q V
Sbjct: 254 FTRWRETRPWDWYMSEETIDLEDSSYPIGGTTKVGTKVNPRMEACNTVPTYDGQPVEVGP 313
Query: 282 GK--------NKVGPVSASDPKIVPP--KRADMKRSMESLIHHFKLYTEGYHVPVGE-VY 330
+ G + + + + +E+L K+ + + G +
Sbjct: 314 RARLATFKHFTEKGTFAQHIARQMEYTDCYYTILNCLENLDTSGKVLADTIPLGNGSMGW 373
Query: 331 AAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIV 390
AA EAP+G K R ++ P + G ++ + D
Sbjct: 374 AANEAPRGTDVHLARVK-DGKVLRYEMLVPTTWNFPTCSRALTGAPWQIAEMVIRAYDPC 432
Query: 391 FGEV 394
Sbjct: 433 VSCA 436
>gi|56751564|ref|YP_172265.1| NAD-reducing hydrogenase HoxS subunit beta [Synechococcus elongatus
PCC 6301]
gi|7447181|pir||S74233 bidirectional hydrogenase chain H - Synechococcus sp. (PCC 6301)
gi|1708772|emb|CAA66383.1| hoxH [Synechococcus elongatus PCC 6301]
gi|56686523|dbj|BAD79745.1| NAD-reducing hydrogenase HoxS beta subunit [Synechococcus elongatus
PCC 6301]
Length = 476
Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats.
Identities = 65/438 (14%), Positives = 119/438 (27%), Gaps = 67/438 (15%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD E H+ + +RG EK E + F + R+ + P++
Sbjct: 13 IEGHAKISVFLDDQGNAEAARFHV-VEYRGFEKFCEGRPFTEMAGITARICGICPVSHLL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A A +K+L ++IP + +R L + I SH L+ +
Sbjct: 72 AAAKTGDKILAVQIPPAAENLRRLINLAQIIQSHALSFFHLSSPDFLLGWDSDPARRNLF 131
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ E G ++HAA+ PGGV + E + I +
Sbjct: 132 GLIAADPESARAGIRLRQFGQQLIEWLGGRKIHAAWAVPGGVRSLLSQEGMVWIRDRLPA 191
Query: 180 FPSALNDISDLL--TGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA---------- 227
+ + D +R F++ G +G G
Sbjct: 192 ELATVRATLDRFKRLLDREFREETAVFGDFPSLFMGLVADNGDWEHYGGHLRFVDSQGRI 251
Query: 228 -------------------AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRE 268
W K Y+ + + +G + R
Sbjct: 252 IADRLREDDYASFLGEAVEPWSYLKFPYYKPWGYPEGMYRVGPLARLNVCDR--IGTGRG 309
Query: 269 SVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGE 328
+ +R + + + +E V E
Sbjct: 310 GSRATGTARSRGGTVTSSFLYHYARLVEILASLEKIAEMVEDPNLQTGFLRSQAGVNCLE 369
Query: 329 VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME--------FLCKGHQLAD- 379
EAP+G + D K R + + AM + ++ +
Sbjct: 370 AIGVSEAPRGTLFHHYRVDSHGKIERVNLIIATGQNNLAMNRTVTQIAQHYIRHGEVQES 429
Query: 380 ----VSAILGSLDIVFGE 393
V A + D
Sbjct: 430 FLNRVEAGIRCFDPCLSC 447
>gi|296169066|ref|ZP_06850726.1| coenzyme F420-reducing hydrogenase, alpha subunit [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295896257|gb|EFG75918.1| coenzyme F420-reducing hydrogenase, alpha subunit [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 430
Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats.
Identities = 54/403 (13%), Positives = 103/403 (25%), Gaps = 29/403 (7%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + L ++ V +I R E + + + R+ + P+ + +
Sbjct: 16 VEGEGALHVALRDGALQSVQLNIYEPPRFFEAFLRGRAHTEPPDLTARVCGICPVAYQVS 75
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG------------ALT 127
A+E G+ + +R L I SH L++
Sbjct: 76 ACNAIEDACGVRVDEELVALRRLLYCGEWINSHALHIYLLHAPDFLGYPDIVGMARDHRE 135
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
G ++ E G +H R GG + + I
Sbjct: 136 VVERGLSLKKAGNRLMEFVGGRAIHPVNVRLGGFYSVPTRSEFKPIEEQLRRALDEAVAT 195
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ ++G + +G + R +G A+ + + S+L
Sbjct: 196 VEWVSGFEFPDLELEHEFLALTAPGVYPIENGAIARSAGPAFPVADFTDHVAESQLPHST 255
Query: 248 PIGKHGDCYD-RYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ D + + G IV +
Sbjct: 256 ALHATLDGGRHLTGPLARFSLNAAALSPIAAEAAARAGLSGECRNPFRSIVVRAVEVVYA 315
Query: 307 SMESL--IHHFKLYTEGYHV---PVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
E+L I ++ + + G + EAP+G D I P
Sbjct: 316 IEEALRIIGEYERPSRPFVPVPARAGVGHGVSEAPRGLLYHRYRIDEQGLVSDATIVPPT 375
Query: 362 YAHLQAMEFLCK-----GHQLADVSAI------LGSLDIVFGE 393
+ A+E L D + + S D
Sbjct: 376 SQNQGAIEADLADLVSDNLALDDAALTGLCEQLIRSYDPCISC 418
>gi|126436005|ref|YP_001071696.1| nickel-dependent hydrogenase, large subunit [Mycobacterium sp. JLS]
gi|126235805|gb|ABN99205.1| nickel-dependent hydrogenase, large subunit [Mycobacterium sp. JLS]
Length = 430
Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats.
Identities = 49/403 (12%), Positives = 112/403 (27%), Gaps = 29/403 (7%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + L +VE V+ +I R E + + + + R+ + P+ + +
Sbjct: 16 VEGEGALHVTLTDGVVESVELNIYEPPRFFEAFLRGRAYTEPPDITARVCGICPVAYQVS 75
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG------------ALT 127
A+E G+ + +R L I SH L++
Sbjct: 76 ACNAIEDACGVTLDPELIELRRLLYCGEWIHSHALHIYLLHAPDFLGYPDAISFAKDHRE 135
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
G ++ E+ G +H R GG + + + +
Sbjct: 136 FLERGLALKKAGNRLMEQIGGRAIHPINVRLGGFYSVPRRDELGPLAEELRRALDDALFT 195
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ + + G ++R +G A+ + + ++
Sbjct: 196 LRSVAEFDFPDVEFDHEFLALTQPDRYAIEDGAIVRSAGPAFPVADFSEHVREMQVPHST 255
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
+ D + S + + + +G + + + + ++ +
Sbjct: 256 ALHATLDGERYLTGPLARYSLSSAALSPTARQAAAQAGLGAQCRNPFRSIVVRAVEVVYA 315
Query: 308 MESLIHHFKLYTEGYHV------PVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+E + + Y G + EAP+G + P
Sbjct: 316 IEEALRIIEDYERPARPFVDVPARAGVGHGVSEAPRGLLYHRYEIGDDGLVSAATMVPPT 375
Query: 362 YAHLQAMEF----LCKGHQ-LADVSAI------LGSLDIVFGE 393
+ A+E+ L G+ L D + + D
Sbjct: 376 AQNQAAIEYEMGRLVAGNLTLDDAELTSLCERSIRNHDPCISC 418
>gi|254168390|ref|ZP_04875235.1| Nickel-dependent hydrogenase superfamily [Aciduliprofundum boonei
T469]
gi|197622671|gb|EDY35241.1| Nickel-dependent hydrogenase superfamily [Aciduliprofundum boonei
T469]
Length = 376
Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats.
Identities = 63/364 (17%), Positives = 112/364 (30%), Gaps = 23/364 (6%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLH---RGTEKLIETKTFLQAVPYFDRLDYVAPMNQ 76
G L +E++ E ++RV I +H R E + K++ R+ + +
Sbjct: 14 IEGHANLTIEIEDENLKRV---IFGVHEGSRYFEAFMVGKSYKYLPELAGRICGICTVAH 70
Query: 77 EHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG------------ 124
E A AVE LGIEI + +R L I SH+L++ A+
Sbjct: 71 EIASVRAVEDALGIEISEEVEDLRKLMLISSHIQSHILHLYFLALPDYRNVESIIELANK 130
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
+ FE +E E G + PG V + I E +E L
Sbjct: 131 NVNLVKKAFELKEASNYMTELIGGRAVQPCTIVPGKVSKRIGKETIERYIKKMKDIYPFL 190
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA--AWDLRKSQPYECYSE 242
D ++L K + + + G + S ++
Sbjct: 191 LDTAELFLSLEYPKYERESEYVALWDGHSIPLYKGEIATLSSIFDPHQYQEHIREWVVEY 250
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+ D L R+ R + R+ R + ++ +
Sbjct: 251 SSAKHSLIDGRDYMVGALARLNINRNLREEARELAERYGVRFPSNRIAWINLAQALENVY 310
Query: 303 DMKRSMESLIHHFKLYTEGYHVP--VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
++E + + ++P GE +EAP+G + K I P
Sbjct: 311 FALEAIEIAENLKEYDPHKINIPRVSGEGVGVIEAPRGLLIHHYKIK-NGKCTYVNIITP 369
Query: 361 GYAH 364
+
Sbjct: 370 TAMN 373
>gi|199594744|gb|ACH90836.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594802|gb|ACH90865.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|199594804|gb|ACH90866.1| NADH dehydrogenase ubiquinone [Stenotrophomonas maltophilia]
gi|301318204|gb|ADK67017.1| NADH dehydrogenase [Stenotrophomonas maltophilia]
gi|301318212|gb|ADK67021.1| NADH dehydrogenase [Stenotrophomonas maltophilia]
gi|301318216|gb|ADK67023.1| NADH dehydrogenase [Stenotrophomonas maltophilia]
Length = 148
Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats.
Identities = 90/148 (60%), Positives = 115/148 (77%)
Query: 17 HPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQ 76
HPAAHGVLRLILE+DGE + R DPH+GLLHRGTEKL E+K F Q++ Y DRLDYV+ M
Sbjct: 1 HPAAHGVLRLILEMDGETIMRADPHVGLLHRGTEKLAESKPFNQSIGYMDRLDYVSMMCN 60
Query: 77 EHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEER 136
EHAY ++E L+GIE P R Q IR ++ EI RIL+HL+ + + A+D+GA+ L+ F ER
Sbjct: 61 EHAYVRSIETLMGIEAPERAQYIRTMFDEITRILNHLMWLGSNALDLGAMAVMLYAFRER 120
Query: 137 EKLMVFYERASGSRMHAAYFRPGGVHQD 164
E+LM YE SG+RMHAAY+RPGGV++D
Sbjct: 121 EELMDCYEAVSGARMHAAYYRPGGVYRD 148
>gi|212224710|ref|YP_002307946.1| Coenzyme F420 hydrogenase alpha subunit [Thermococcus onnurineus
NA1]
gi|212009667|gb|ACJ17049.1| Coenzyme F420 hydrogenase alpha subunit [Thermococcus onnurineus
NA1]
Length = 392
Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats.
Identities = 65/377 (17%), Positives = 122/377 (32%), Gaps = 10/377 (2%)
Query: 22 GVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYA 81
G +L+L + V+ RG EKL+ K L AV R+ + + A +
Sbjct: 14 GEAKLVLYEENGTVQDALFIATAPIRGFEKLVVGKNPLFAVEAVMRICGLCHASHGIAMS 73
Query: 82 LAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNV----TTQAMDVGALTPPLWGFEERE 137
A+E +GI P G L+R + RI SH+L ++ +
Sbjct: 74 EAIENAIGIIPPRNGILMREALGLVNRIQSHMLEFLMVAGDLLIEEKREEVLFQLMDFHA 133
Query: 138 KLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIF 197
K+ + + G+ H GG+ + ++ +I+ LLT I
Sbjct: 134 KISDYLLKMGGAATHPPNLTVGGMFSVPKWSVFNNLKARLPKLTGQWEEIAHLLTDEDIQ 193
Query: 198 KQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYD 257
+ + K E+ + R + A + YE + +
Sbjct: 194 TEVADELREKKAENNYLVSSLFYGDRFNINAERIETMPYYEYRKDNPHS------KESTT 247
Query: 258 RYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKL 317
E E+ R V R + + + + + ++ ++S+
Sbjct: 248 LIAFYGGEKVEAGPRARMKVYREFTDSSLYGLHTARVQDTTLALIRLEEILDSIKMDEPF 307
Query: 318 YTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQL 377
T+ G+ EAP+G + + KI P ++ ME + KG +
Sbjct: 308 RTKNIVFGPGKGVGVYEAPRGTLIHLIELGDEGRVVSSKIIVPTMFNIPVMEEMAKGLSV 367
Query: 378 ADVSAILGSLDIVFGEV 394
A++ D
Sbjct: 368 KAAEAVMRLYDPCIPCT 384
>gi|150400535|ref|YP_001324301.1| nickel-dependent hydrogenase large subunit [Methanococcus aeolicus
Nankai-3]
gi|150013238|gb|ABR55689.1| nickel-dependent hydrogenase large subunit [Methanococcus aeolicus
Nankai-3]
Length = 475
Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats.
Identities = 60/417 (14%), Positives = 108/417 (25%), Gaps = 77/417 (18%)
Query: 47 RGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEI 106
RG EK +E + A R+ + ++ A A AV+++ G++IP L+R L +
Sbjct: 39 RGFEKFMEGRYVEDAPILTPRICGICQVSHHLASAKAVDEIYGVKIPETAMLLRNLMHQS 98
Query: 107 GRILSHLLNVTTQAMDV-------------------GALTPPLWGFEEREKLMVFYERAS 147
+ SH L+ A E R+
Sbjct: 99 STVHSHALHFYALAAPDLMFPTTDDILKRNLMGMAKEHPEVVKEAIELRKIGQTIVRVVG 158
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL---LTGNRIFKQRNVNI 204
G +H GG + +++ D ++ L N
Sbjct: 159 GRAIHPCTAVVGGQSISLSETKRDELLKLSDRAVELSEKSIEIGKKLIENIKNNDLLDIG 218
Query: 205 GTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI----PIGKHGDCYDRYL 260
G G G Y + G Y ++
Sbjct: 219 --YFESYHAGMVNDGTHELYDGKIRVCDSKGKTA-YEYNPSEYLNYIAEGVKPYSYLKFP 275
Query: 261 VRMMEMRESVKIIRQCVNRL---------------------LGKNKVGPVSASDPKIVPP 299
E ++RL G+ PV + +++
Sbjct: 276 YLKDLGEEEGVYRVNTLSRLNVADRMATPLAQKYYKEFIEEYGEPCHYPVLFNYARLI-- 333
Query: 300 KRADMKRSME---SLIHHFKLYTEGYHVPV-----GEVYAAVEAPKGEFGVYLISDGGNK 351
+M S E L+ + K+ GE VEAP+G + +D
Sbjct: 334 ---EMLSSAELTKKLLENDKIVDTDIKAEPSGDVVGEGVGCVEAPRGTLFHHFKTDDKGV 390
Query: 352 PYRCKIRAPGYAHLQAMEFLCKG--------------HQLADVSAILGSLDIVFGEV 394
+ + AM+ K + L + ++ + D
Sbjct: 391 ITDTNLIVATTQNNPAMDIGVKKVAEKYIKTPEDATPNILNYMEMVIRAYDPCLSCA 447
>gi|108800382|ref|YP_640579.1| nickel-dependent hydrogenase, large subunit [Mycobacterium sp. MCS]
gi|119869511|ref|YP_939463.1| nickel-dependent hydrogenase, large subunit [Mycobacterium sp. KMS]
gi|108770801|gb|ABG09523.1| nickel-dependent hydrogenase, large subunit [Mycobacterium sp. MCS]
gi|119695600|gb|ABL92673.1| nickel-dependent hydrogenase, large subunit [Mycobacterium sp. KMS]
Length = 430
Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats.
Identities = 49/403 (12%), Positives = 112/403 (27%), Gaps = 29/403 (7%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + L +VE V+ +I R E + + + + R+ + P+ + +
Sbjct: 16 VEGEGALHVTLTDGVVESVELNIYEPPRFFEAFLRGRAYTEPPDITARVCGICPVAYQVS 75
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG------------ALT 127
A+E G+ + +R L I SH L++
Sbjct: 76 ACNAIEDACGVTLDPELIELRRLLYCGEWIHSHALHIYLLHAPDFLGYPDAISFAKDHRE 135
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
G ++ E+ G +H R GG + + + +
Sbjct: 136 FLERGLALKKAGNRLMEQIGGRAIHPINVRLGGFYSVPRRDELGPLAEELRRALDDALFT 195
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ + + G ++R +G A+ + + ++
Sbjct: 196 LRSVAEFDFPDVEFDHEFLALTQPDRYAIEDGTIVRSAGPAFPVADFSEHVREMQVPHST 255
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
+ D + S + + + +G + + + + ++ +
Sbjct: 256 ALHATLDGERYLTGPLARYSLSSAALSPTARQAAAQAGLGAQCRNPFRSIVVRAVEVVYA 315
Query: 308 MESLIHHFKLYTEGYHV------PVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+E + + Y G + EAP+G + P
Sbjct: 316 IEEALRIIEDYERPARPFVDVPARAGVGHGVSEAPRGLLYHRYEIGDDGLVSAATMVPPT 375
Query: 362 YAHLQAMEF----LCKGHQ-LADVSAI------LGSLDIVFGE 393
+ A+E+ L G+ L D + + D
Sbjct: 376 AQNQAAIEYEMGRLVAGNLTLDDAELTSLCERSIRNHDPCISC 418
>gi|301318192|gb|ADK67011.1| NADH dehydrogenase [Stenotrophomonas terrae]
Length = 148
Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 88/148 (59%), Positives = 113/148 (76%)
Query: 17 HPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQ 76
HPAAHGVLRLILE+DGE + R DPHIGLLHR TEKL E+K F Q++ Y DRLDY + M
Sbjct: 1 HPAAHGVLRLILEMDGETIMRADPHIGLLHRATEKLAESKPFNQSIGYMDRLDYCSMMCN 60
Query: 77 EHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEER 136
EHAY A+E L+GIE+P R Q IR ++ E+ RIL+HL+ + + +D+GA+ L+ F ER
Sbjct: 61 EHAYVRAIETLVGIEVPERAQYIRTMFDEVTRILNHLMWLGSNGLDLGAMAVMLYAFRER 120
Query: 137 EKLMVFYERASGSRMHAAYFRPGGVHQD 164
E+LM YE SG+RMHAAY+RPGGV++D
Sbjct: 121 EELMDCYEAVSGARMHAAYYRPGGVYRD 148
>gi|94310467|ref|YP_583677.1| nickel-dependent hydrogenase, large subunit [Cupriavidus
metallidurans CH34]
gi|93354319|gb|ABF08408.1| NAD-reducing hydrogenase hoxS subunit beta [Cupriavidus
metallidurans CH34]
Length = 488
Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 62/454 (13%), Positives = 129/454 (28%), Gaps = 83/454 (18%)
Query: 20 AHGVLRLILELDGEI-VERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD + V H+ + RG EK I+ + +A + R+ + ++
Sbjct: 13 IEGHGKVTVHLDDDNNVIDAKLHV-VEFRGFEKFIQGHPYWEAPMFLQRICGICFVSHHL 71
Query: 79 AYALAVEKL------LGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------- 124
A A++ + GI++ + +R L + SH +
Sbjct: 72 CGAKALDDMVGVGLKSGIDVTPAAEKMRRLGHYAQMLQSHTTAYFYLIVPEMLFGMDAPP 131
Query: 125 -----------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDI 173
R+ + G +MH PGGV++++ + +
Sbjct: 132 EQRNVLGLIEADPELVKRVVMLRKWGQEVIKVVFGKKMHGINSVPGGVNKNLSIAERDRL 191
Query: 174 GCW------CDSFPSALNDISDLLTG-NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSG 226
D D L + + + + V + G + G
Sbjct: 192 LNGEEGLLAMDQVIDFAQDGLRLFYDFHEKHRAQVDSFADVPALNMSLVDADGNVDYYHG 251
Query: 227 ----AAWDLRKSQPYECYSELD-FDIPIGKHGDCYDRYLVRMMEMRESVK---------- 271
D + + + LD F + + YL + + SV+
Sbjct: 252 KLRIVDDDKNIVRELDYHDYLDHFSEAVEEWSYMKFPYLKDLGREKGSVRVGPLGRMNVT 311
Query: 272 ------IIRQCVNRL----LGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKL---- 317
+ ++ + R G+ + + + + A + L+H L
Sbjct: 312 KTLSTPLAQEALERFHAYTKGRANNMTLHTNWARAIEILHAA--EVIRELLHDPDLQKDQ 369
Query: 318 --YTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME------ 369
T GE VEAP+G + +D + + Q M
Sbjct: 370 LVLTPPAGAWTGEGVGVVEAPRGTLLHHYRADERGNITFANLVVATTQNNQVMNRTVRSV 429
Query: 370 ---------FLCKGHQLADVSAILGSLDIVFGEV 394
+ +G A + + + D
Sbjct: 430 AEDYLGGHGEITEGMMNA-IEVGIRAYDPCLSCA 462
>gi|332558936|ref|ZP_08413258.1| hydrogenase large subunit [Rhodobacter sphaeroides WS8N]
gi|332276648|gb|EGJ21963.1| hydrogenase large subunit [Rhodobacter sphaeroides WS8N]
Length = 475
Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 68/473 (14%), Positives = 122/473 (25%), Gaps = 96/473 (20%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
GP + G L + LE+ V + L+RG E+++E + A+ R+ +
Sbjct: 6 VGPFN-RVEGDLEVHLEVAEGAVTAARVNAP-LYRGFERMLEGRDPRDALTITPRICGIC 63
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP--- 129
++Q A A A+ +G+ G+ + L + HL + M
Sbjct: 64 SISQSVAAARALGAAMGLVPAPAGERVAALIHAVENAADHLTHFNLFFMPDFTRPAYAGR 123
Query: 130 ------------------LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
R L+ +G H +PGGV +
Sbjct: 124 SWHGRAVARFTAMEGSAQREAVAARADLLHILGLLAGKWPHTLAVQPGGVTRAPGAAERM 183
Query: 172 DIGCWCDSFPSALN--------------DISDLLTGNRIFKQ------------------ 199
I SF L + L
Sbjct: 184 RILSSLRSFRRHLERTLFGGPLEAFAALETEAALLSWSSGDAGLFLEIAADLGLAGLGCG 243
Query: 200 --RNVNIGTVK----LEDAWGWGFSG-VMIRGSGAAWDLRKSQPYECYSELDFDIPI--- 249
R ++ G A G +G + G + + +
Sbjct: 244 AGRYLSFGAYPLPEGPAFAAGTWQTGAPVPLDPGLIREDLSHAWMLGEAAHPSEGRTLPD 303
Query: 250 ---GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNK----VGPVSASDPKIVPPKRA 302
+ + + E+ + RQ V G ++ +++ R
Sbjct: 304 EEMREAAYSWCKAPRLDGRPMETGALARQVVAGHPLARDLARQGGVLARVGARLLELART 363
Query: 303 DMKRSMESLIHHFKL-----YTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKI 357
+ ME L G + VEA +G G ++ G R +I
Sbjct: 364 QIL--MEELAQGIDPAARFMVAMGPLPRDAQGAGLVEAARGALGHWVRLRG-GLIDRYQI 420
Query: 358 RAPGYAHLQ---------AMEFLCKGHQLA-------DVSAILGSLDIVFGEV 394
AP + +E G + V ++ S D
Sbjct: 421 VAPTTWNFSPRDAAGVPGPLEAALVGAPVEPGETTPLSVQHVVRSFDPCMVCT 473
>gi|147920963|ref|YP_685228.1| coenzyme F420-non-reducing hydrogenase (methyl viologen-reducing
hydrogenase), alpha subunit [uncultured methanogenic
archaeon RC-I]
gi|110620624|emb|CAJ35902.1| coenzyme F420-non-reducing hydrogenase (methyl viologen-reducing
hydrogenase), alpha subunit [uncultured methanogenic
archaeon RC-I]
Length = 467
Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 66/438 (15%), Positives = 113/438 (25%), Gaps = 62/438 (14%)
Query: 16 QHPAA--HGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
HP G + ++LD V H L RG EK +E +A R+ +
Sbjct: 6 IHPITRIEGHASVTVQLDDKGEVADAHFHATEL-RGFEKFLEGAAIEEAPRITPRICGIC 64
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------- 124
P A A AV+++ G IP +R L I SH L++ +M
Sbjct: 65 PTVHHLAAAKAVDEVFGATIPEAAYKMRELLIAGQLISSHYLHLFMLSMPDYLLEGATPA 124
Query: 125 ----------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIG 174
E R+ E A G +H PGG+ + + ++
Sbjct: 125 TRNVAGLAKANPDLARMAIEARKIGQRITEEAGGKPIHPVSAIPGGMSFSLTEQKRAELE 184
Query: 175 CWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKS 234
+ +L+ G K V V D G G G + +
Sbjct: 185 AYAKRSLEIAVAAWNLVNGEFDRKADFVKTLGVVQTDFIGMTSGGKFETYDGPIRMMDAN 244
Query: 235 --------------------QPYECYSELDFDIPIGKHG-DCYDRYLVRMMEMRESVKII 273
+PY G + R V +
Sbjct: 245 GGSLGEFQAKDYSSHIEEYAEPYSYMKFTKLKSGSGFYRVGPLARVNVADSMGYPEADKM 304
Query: 274 RQCVNRLLGKNKVGPVSASDPKIVPPKR--ADMKRSMESLIHHFKLYTEGYH-VPVGEVY 330
G+ P + +I+ ++ K +
Sbjct: 305 LAEFRAKYGRAPQQPALYNLARIIEVAAASERALALLQDRAITDKNVRNPVAGIKNTRGV 364
Query: 331 AAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME--------FLCKGHQLAD--- 379
VEA +G + + + +A++ G AD
Sbjct: 365 GIVEATRGTLIHDYTVNDKGFITSANLIVATGHNNRAIDRGVFETAKKYIHGD--ADEAT 422
Query: 380 ---VSAILGSLDIVFGEV 394
+ ++ + D
Sbjct: 423 LNKIEMLVRAYDPCVSCA 440
>gi|327401726|ref|YP_004342565.1| hydrogen dehydrogenase [Archaeoglobus veneficus SNP6]
gi|327317234|gb|AEA47850.1| Hydrogen dehydrogenase [Archaeoglobus veneficus SNP6]
Length = 481
Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 63/451 (13%), Positives = 126/451 (27%), Gaps = 73/451 (16%)
Query: 16 QHPAA--HGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
HP G ++ + LD E V+ + + RG EK E + + ++ V
Sbjct: 6 IHPNTRLEGHGKVDIILDDEGNVKDAYFQV-IEFRGFEKFCEGRHVEELPRITPKICGVC 64
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL-- 130
P A A A + + G+EIP + +R L+ SH+L+ A + +
Sbjct: 65 PGAHHMASAKACDAVFGVEIPPAAKKLRELFYCAHVAHSHILHFYVLAAPDFFIEDKMKR 124
Query: 131 ---------------WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGC 175
+ R E +G ++ PGG+ + + E ++I
Sbjct: 125 NVFGLVEVLGKELCAEILDCRVYAQRIQEIIAGHPIYPVAALPGGMAKPLSEEERKEIEE 184
Query: 176 WCDSFPSALNDISDLLTGNRIFKQRNVNI--GTVKLEDAWGWGFSGVMIR---GSGA--- 227
+ + K+ + G V + G R G
Sbjct: 185 KAKKLVDFAKKGLEFFEDVVLKKEGMEELIKGDVYAHRTYYAGMVDEKDRVNFYDGVVKV 244
Query: 228 ---------AWDLRKSQPYECYSELDFDIP-------IGKHGDC------------YDRY 259
+++R + + +G G R
Sbjct: 245 VDPDGKEFCRFEVRDYLEHIAEHVEPWSYVKFPYLKAVGWKGFVDGVDSGIYRVNSLARL 304
Query: 260 LVRMMEM-RESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR--ADMKRSMESLIHHFK 316
V + + R+ + K ++ +++ M K
Sbjct: 305 NVAEGMATPMADEAYRKMYDFFGEKPVHNILAYHWARLIEIAYAAERMYELACDEEITDK 364
Query: 317 LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFL----- 371
E E AVEAP+G + +++ + + + A+
Sbjct: 365 NVREVPKSKPSEGVGAVEAPRGTLYHHYVTNKKGVVEKVNLIVATVQNNPAINMSVKKAA 424
Query: 372 ---CKGHQLAD-----VSAILGSLDIVFGEV 394
KG ++ + V + + D
Sbjct: 425 QNFIKGGEIKEGLLNAVEMAVRAYDPCLACA 455
>gi|288931224|ref|YP_003435284.1| nickel-dependent hydrogenase large subunit [Ferroglobus placidus
DSM 10642]
gi|288893472|gb|ADC65009.1| nickel-dependent hydrogenase large subunit [Ferroglobus placidus
DSM 10642]
Length = 457
Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 59/421 (14%), Positives = 106/421 (25%), Gaps = 47/421 (11%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD VE V RG EKL+ + + +
Sbjct: 12 IEGHAKISVFLDDKNGVENVFFQA-TEFRGYEKLLLGLPMEEVPRIVSTICGICRGIHFV 70
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A A +K+ E+ + IR + I H + + +
Sbjct: 71 AALKAADKVFNAEVSEAAEKIREMLIYAHFIEDHSVTLFALGLPDYISPKERNVFGVVKK 130
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
T +R + + G MH PGG + + E I +
Sbjct: 131 LGTTAKEIIRKRSYALKIMDILGGKSMHPVAAVPGGWSKRLSEEERRKIEMFSKELVELG 190
Query: 185 NDISDLLTGNRIFKQRNV-----------NIGTVKLEDAWGWGFSG-VMIRGSGAAWD-- 230
++ ++ + G G V+ + SG ++
Sbjct: 191 KIFVSIVEKEAEKMDNLELNLNFLATSKNGEYSLYDGEEVVIGPDGKVIEKFSGENYEEH 250
Query: 231 ---LRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVG 287
Y L G D + + S + + G
Sbjct: 251 IKEKSVEWSYSKLPYLRKFGWSGLQEDKSFYVTGPLARLNVSKIPTPLAKEKAERLFESG 310
Query: 288 PVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP------VGEVYAAVEAPKGEFG 341
S + + ++ E L T V VGE VEAP+G
Sbjct: 311 KPSKNIIFNHWARAVEVLLCAEKLEELAGDKTVTGSVRGEIGKIVGEGVGVVEAPRGLLI 370
Query: 342 VYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK--------GHQLADVSAILGSLDIVFGE 393
+ +DG + + A+ K L ++ + D
Sbjct: 371 HHYKTDGRGIVKWANLIVATTQNTPAINIALKKAAKEKFSKETLETFEKVVRAFDPCMSC 430
Query: 394 V 394
Sbjct: 431 A 431
>gi|45358383|ref|NP_987940.1| coenzyme F420-reducing hydrogenase subunit alpha [Methanococcus
maripaludis S2]
gi|44921141|emb|CAF30376.1| coenzyme F420-reducing hydrogenase subunit alpha [Methanococcus
maripaludis S2]
Length = 410
Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 60/406 (14%), Positives = 115/406 (28%), Gaps = 33/406 (8%)
Query: 6 SRSFTINFGPQHPAA--HGVLRLILELDGEIVER------VDPHIGLLHRGTEKLIETKT 57
++ IN P G +L+L++D + + V P RG EK + K
Sbjct: 2 GKTVEIN-----PTTRHEGHTKLVLKVDDDGIVEKGNYLSVTPV-----RGFEKFLVGKV 51
Query: 58 FLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVT 117
A R + P+ + A+E GI P G L+R L ++ SH L+
Sbjct: 52 AEFAPIAVSRFCGICPIAHATSSVEAIEDACGITPPKDGLLLRELTGLGNKMHSHPLHEF 111
Query: 118 ----TQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDI 173
+ + E R+ + G +HA + GG+ ++I I
Sbjct: 112 LIAPDFIPEADRVEYIKRIQEMRKTGQFIVDTIGGEAIHAPNIKVGGMLKNITENAASKI 171
Query: 174 GCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF-SGVMIRGSGAAWDLR 232
C + + + L + +G+ + G+ D
Sbjct: 172 YYKCREYEKLAKEHVEYLIPIFESNMLADGTEIPEKLGYHDFGYIATDATYGNRENIDQS 231
Query: 233 KSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSAS 292
K Y Y + D+ + M R + G ++
Sbjct: 232 KVVEYTPYDVYEKDVAVQACTTIPRYNGRLMEVGP------RARFAKFHDFKNKGAMAIH 285
Query: 293 DPKIVP--PKRADMKRSMESLIHHFKLYTEGYHVPVGE--VYAAVEAPKGEFGVYLISDG 348
+ ++ L + K + + GE EA +G D
Sbjct: 286 IARAYENVVHVKRAMEIIDELDVNGKTRSNEPILGDGEKIGLGVHEAARGHNTHQAAIDA 345
Query: 349 GNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEV 394
+ ++ + +G ++ + D
Sbjct: 346 KGRITYYNAIVATTWNIPLIGKATEGTHYKFAEHVVRAYDPCVSCA 391
>gi|301318184|gb|ADK67007.1| NADH dehydrogenase [Stenotrophomonas sp. DSM 2408]
gi|301318188|gb|ADK67009.1| NADH dehydrogenase [Stenotrophomonas koreensis]
Length = 148
Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 92/148 (62%), Positives = 116/148 (78%)
Query: 17 HPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQ 76
HP+AHGVLRLILE+DGE + R DPHIGLLHRGTEKL E+K F Q++ Y DRLDY + M
Sbjct: 1 HPSAHGVLRLILEMDGETIMRADPHIGLLHRGTEKLAESKPFNQSIGYMDRLDYCSMMCN 60
Query: 77 EHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEER 136
EHAY A+E L+GIE P+R Q IR ++ EI RIL+HL+N+ T A+D+GA+ L+ F ER
Sbjct: 61 EHAYVRAIENLMGIEAPVRAQYIRTMFDEITRILNHLMNIGTGALDLGAMAVMLYAFRER 120
Query: 137 EKLMVFYERASGSRMHAAYFRPGGVHQD 164
E+LM YE SG+RMHAAY+RPGGV++D
Sbjct: 121 EELMDCYEAVSGARMHAAYYRPGGVYRD 148
>gi|213400895|gb|ACJ47096.1| NADH dehydrogenase subunit D [Wolbachia endosymbiont of Drosophila
simulans]
Length = 192
Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 112/192 (58%), Positives = 146/192 (76%), Gaps = 4/192 (2%)
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+DVGA+TP LW FEEREK++ FYERASG+R HAAY RPGG+ DIP L+EDI + + F
Sbjct: 5 LDVGAMTPLLWLFEEREKILEFYERASGARFHAAYIRPGGLAADIPEGLIEDIAKFIEQF 64
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P ++D+ DLLT NRI+KQR V I + ++ A WGFSG M+R +G AWDLRKSQPYE Y
Sbjct: 65 PKYIDDVDDLLTENRIWKQRTVGISEISIKQALDWGFSGPMLRAAGLAWDLRKSQPYEIY 124
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+LDFDIPIG++GDCYDRYLVRM E+R+S+ +++QC+ ++ GP+ D KI PP
Sbjct: 125 DQLDFDIPIGQNGDCYDRYLVRMAEIRQSISLVKQCIKKM----PEGPIKTEDRKISPPP 180
Query: 301 RADMKRSMESLI 312
RA+MK SME++I
Sbjct: 181 RAEMKESMEAVI 192
>gi|150398832|ref|YP_001322599.1| nickel-dependent hydrogenase large subunit [Methanococcus vannielii
SB]
gi|150011535|gb|ABR53987.1| nickel-dependent hydrogenase large subunit [Methanococcus vannielii
SB]
Length = 410
Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 59/407 (14%), Positives = 116/407 (28%), Gaps = 35/407 (8%)
Query: 6 SRSFTINFGPQHPAA--HGVLRLILELDGEIVER------VDPHIGLLHRGTEKLIETKT 57
++ IN P G +L+L++D E + V P RG EK + K
Sbjct: 2 GKTVEIN-----PTTRHEGHTKLVLKVDDEGIVEKGNYLSVTPV-----RGFEKFLVGKL 51
Query: 58 FLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVT 117
A R + P+ + A+E I P G L+R L ++ SH L+
Sbjct: 52 AEFAPIAVSRFCGICPIAHATSAVEAIEDACNITPPKDGLLLRELTGLGNKLHSHPLHQF 111
Query: 118 ----TQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDI 173
+ + E R+ + G +HA + GG+ ++I +
Sbjct: 112 LIAPDFIPEADRVEYIKRIQEMRKTGQYIVDVVGGEAIHAPNIKVGGMLKNITENAASKM 171
Query: 174 GCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF--SGVMIRGSGAAWDL 231
C + + + L + + +G+ + G+ +
Sbjct: 172 YYKCKEYEKLAKEQIEYLIPIFESRMLVNGTEIPEKLGYHEFGYLATDPT-YGNREKIEQ 230
Query: 232 RKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSA 291
K Y Y + D+ + M R + G ++
Sbjct: 231 NKVVEYTPYDVYEKDVAMQACTTIPTYNGRLMEVGP------RARFAKFFDFKDKGAMAI 284
Query: 292 SDPKIVPPKR--ADMKRSMESLIHHFKLYTEGYHVPVGE--VYAAVEAPKGEFGVYLISD 347
+ ++ L + K + + GE EA +G D
Sbjct: 285 HIARAYEMIVNVKRALEVLDKLDVNGKTRSSEPILGDGEKVGLGVHEAARGHNTHQAAID 344
Query: 348 GGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEV 394
G + ++ + +G ++ + D
Sbjct: 345 GKGRITYYNAIVATTWNIPLIGKATEGTHYKFAEHVVRAYDPCVSCA 391
>gi|163846763|ref|YP_001634807.1| nickel-dependent hydrogenase large subunit [Chloroflexus
aurantiacus J-10-fl]
gi|222524577|ref|YP_002569048.1| nickel-dependent hydrogenase large subunit [Chloroflexus sp.
Y-400-fl]
gi|163668052|gb|ABY34418.1| nickel-dependent hydrogenase large subunit [Chloroflexus
aurantiacus J-10-fl]
gi|222448456|gb|ACM52722.1| nickel-dependent hydrogenase large subunit [Chloroflexus sp.
Y-400-fl]
Length = 473
Score = 167 bits (424), Expect = 3e-39, Method: Composition-based stats.
Identities = 67/443 (15%), Positives = 113/443 (25%), Gaps = 78/443 (17%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD V H+ RG E+ + F + R+ + P++
Sbjct: 13 IEGHAKISIHLDDHGDVAETRFHV-TEFRGFERFCIGRPFWEMPGITARICGICPVSHLL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV--------------- 123
A A A + +L + IP + +R L + I SH L+ +
Sbjct: 72 ASARAGDGILAVLIPPAAEKLRRLMNLAQIIQSHALSFFHLSGPDLMLGFDSDPAQRNIF 131
Query: 124 ----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ E G ++H A+ PGGV + + I
Sbjct: 132 GLIAADPDVARNGIRLRQFGQEVIEMLGGRKIHPAWAVPGGVRSGLSASSRDHIRAKLPE 191
Query: 180 FPSALNDISDLLTGNRIFKQR-NVNIGTVKLEDAWGWGFSGVMIRGSGA----------- 227
+ D L QR G G G + G
Sbjct: 192 MLTIACDALGRLKQLSAKYQREIETFGVFPSLYLGMVGPGGRWMHYGGKLRVIDHTGNIL 251
Query: 228 ------------------AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRES 269
W K +G +
Sbjct: 252 IDELDPIDYRDVIGEAVEPWSYLKFPYIRALGYPQGMYRVGPLARINICTTMGAERADAE 311
Query: 270 VKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVG-- 327
++ +RQ V G G +++ ME L+ L + G
Sbjct: 312 LRELRQAV----GPVIHGSFYYHHARLIE--IIAALERMEVLVEDDDLLSTELRADAGVN 365
Query: 328 --EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLA------- 378
E EAP+G + D + + A+ Q+A
Sbjct: 366 RHEAVGVSEAPRGTLFHHYRVDEKGLITDVNLIIATGQNNLAINRTV--GQIAQSYIRHG 423
Query: 379 --D------VSAILGSLDIVFGE 393
D + A + + D
Sbjct: 424 QFDEGILNRIEAGVRAYDPCLSC 446
>gi|254426077|ref|ZP_05039794.1| Nickel-dependent hydrogenase superfamily [Synechococcus sp. PCC
7335]
gi|196188500|gb|EDX83465.1| Nickel-dependent hydrogenase superfamily [Synechococcus sp. PCC
7335]
Length = 480
Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats.
Identities = 65/448 (14%), Positives = 116/448 (25%), Gaps = 76/448 (16%)
Query: 20 AHGVLRLILELD--GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQE 77
G ++ + LD GE V H+ RG EK E + F + R+ + P++
Sbjct: 8 IEGHAKISIYLDEQGE-VSDARFHV-TEFRGFEKFCEGRPFWEMPGITARICGICPVSHL 65
Query: 78 HAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTT------------------- 118
A A A ++LL +EIP + +R L + I SH L+
Sbjct: 66 LASAKAGDRLLAVEIPPAAEKLRRLMNLGQIIQSHALSFFHLSSPDLLLGWESDPAGRNI 125
Query: 119 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
+ G R+ + + G ++H A+ PGGV + E +I
Sbjct: 126 FGLMAAEPELARGGIRLRQFGQLLIDYLGGRKIHPAWAVPGGVRSCLSAEHKAEIQSRLP 185
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNI-GTVKLEDAWGWGFSGVMIRGSGA---------- 227
+ + Q +I G G G
Sbjct: 186 EAKEIILRVLARFRRLLENLQEEAHIFGNFPSLFMGLVTADGTWEHYDGWLRFVDSGGNI 245
Query: 228 -----------AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEM---------- 266
W + Q + D R + +
Sbjct: 246 IADRLDPADYTDWIGERVQSDSYLKSPYYKPLGYPDRDDLCRLKSGLYRVGPLARLNICD 305
Query: 267 RESVKIIRQCVNRLLGKNKVGP--------VSASDPKIVPPKRADMKRSMESLIHHFKLY 318
R + Q + ++ + + ++ + +
Sbjct: 306 RIGTPLAEQELQHFRKHSESTNGIVNSSFFYHYARLIEILTCLERIECGLADADLQSERL 365
Query: 319 TEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFL---CKGH 375
V E EAP+G + D + + + AM H
Sbjct: 366 RSRADVNRLEAVGVGEAPRGTLFHHYKIDETGLLTQVNLIIATGQNNLAMNRTVAQIARH 425
Query: 376 QLAD----------VSAILGSLDIVFGE 393
+ D V A + + D
Sbjct: 426 YIHDDTIPEPVLNRVEAGIRAFDPCLSC 453
>gi|257791029|ref|YP_003181635.1| nickel-dependent hydrogenase large subunit [Eggerthella lenta DSM
2243]
gi|317488256|ref|ZP_07946823.1| nickel-dependent hydrogenase [Eggerthella sp. 1_3_56FAA]
gi|325830756|ref|ZP_08164140.1| putative membrane-bound hydrogenase 1 large subunit [Eggerthella
sp. HGA1]
gi|257474926|gb|ACV55246.1| nickel-dependent hydrogenase large subunit [Eggerthella lenta DSM
2243]
gi|316912638|gb|EFV34180.1| nickel-dependent hydrogenase [Eggerthella sp. 1_3_56FAA]
gi|325487163|gb|EGC89606.1| putative membrane-bound hydrogenase 1 large subunit [Eggerthella
sp. HGA1]
Length = 554
Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats.
Identities = 76/523 (14%), Positives = 130/523 (24%), Gaps = 150/523 (28%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E+ V G RG E ++E +T A R+ V P++ H+
Sbjct: 12 IEGHLRVEMEVTNGKVSDA-WVSGGCFRGMEMVVENRTPEDAAQIVQRICGVCPVSHAHS 70
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL------------- 126
A+A EK GI+I ++IR L + SH+L A
Sbjct: 71 SAIAAEKAYGIKISNNARIIRNLLEGAQFLHSHILWFYNLAALDYVNPLNALKADPADAY 130
Query: 127 --------TPPLWGFEEREKLMVFYE-----RASGSRM----HAAYFRPGGVHQDIPPEL 169
+ +E+L F + SG+ AY P +
Sbjct: 131 DLAQAAGTSMNSDFVALKERLANFADNGQLSIFSGNWFDAEDGTAYQLPPELDLICTAHY 190
Query: 170 VEDIGCW---------------------------------CDSFPSALNDISDLL----- 191
+E + D + ++I D +
Sbjct: 191 LEALTMQAKASQISAIIGGKMPHVMTLVPGGTAFVPTDQKLDELKALADEIYDWVESTMI 250
Query: 192 ---TGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL----- 243
+ +N G F G S + P +
Sbjct: 251 PDTLAIAPYYIDALNWGKGCGRYVAWGVFEGPGDYASYTEQMANRYLPMGVIDDKLNLSD 310
Query: 244 -DFDIPIGKHGDCYDR------------YLVRMMEMRESVKIIRQCVNRLLGKNKVG--- 287
++ G + + E +C + G
Sbjct: 311 VQENLITEYMGRSWYKGDATYTSPYFVTEPEYTEYNVEDRYTWVKCPAYDGKPYEAGGLS 370
Query: 288 PVSASDPKIVPPKRADMKRSMESLIHHFKL------------------------------ 317
V A+ + VP + +E+L ++
Sbjct: 371 RVLAAYKRNVPFVVEQVDGLLEALGAPGQIGVAQSTLGRTAVRQIETLYIAGLMKDWVAE 430
Query: 318 --------YTEGYHVPV---GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL- 365
+E + P G EAP+G S K +I P +L
Sbjct: 431 LIEALKSGDSEYFREPSTITGAGTGFWEAPRGALYHS-ESIKDGKIEGYQIIIPTTWNLA 489
Query: 366 --------QAMEFLCKGHQLADVS------AILGSLDIVFGEV 394
ME G+ + D+ + S D
Sbjct: 490 PINESGEHGPMEQALIGNPVGDIEKPINALRTVHSFDPCTACA 532
>gi|148643184|ref|YP_001273697.1| coenzyme F420-reducing hydrogenase, alpha subunit, FrhA
[Methanobrevibacter smithii ATCC 35061]
gi|148552201|gb|ABQ87329.1| coenzyme F420-reducing hydrogenase, alpha subunit, FrhA
[Methanobrevibacter smithii ATCC 35061]
Length = 405
Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats.
Identities = 60/385 (15%), Positives = 118/385 (30%), Gaps = 25/385 (6%)
Query: 21 HGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L++E+D E IV + RG EK++ K A R+ V P+ A
Sbjct: 14 EGHAELVMEVDDEGIVTKGRYLSITPVRGLEKMVAGKNPETAPVLCQRICGVCPIPHTLA 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILS----HLLNVTTQAMDVGALTPPLWGFEE 135
A++ L IE+P G+L+R + S H L + T
Sbjct: 74 SVEAIDHSLDIEVPKAGKLLRQATLAAHGVNSAAIHHFLIAPDFVPEEDFTTAVKSVSAV 133
Query: 136 REKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNR 195
R+ + + +G +H + R GG+ ++I + + +F + +L+
Sbjct: 134 RKNVQYVVDMLAGEGIHPSDIRVGGMARNITSATKDKLIDRLKAFKPDMEKHVELMKSFI 193
Query: 196 IFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDC 255
++ +G V G + + + P Y + +
Sbjct: 194 AARELPEGLGVVDAPLLASSASYGNLDEFDYDNFS--EVLPEAWYDDPEIGKK------- 244
Query: 256 YDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK--RADMKRSMESLIH 313
+ ++ + R +++ G G V+ + +E +
Sbjct: 245 -ACTTIPLINGKNVETGPRARMDKFNGFKDKGVVAQHVARAEEMLNNYNLTIDLLEQIDT 303
Query: 314 HFKLYTEGYHVPVGE-VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLC 372
+ G+ +E P+G K P ++ M
Sbjct: 304 SAPARADYDDRGTGKLGIGVIEGPRGTNVHMANVKDS-KIQFYSAIVPTTWNIPTMGPAT 362
Query: 373 KGHQL---ADVSAILGSLDIVFGEV 394
+G ADV + + D
Sbjct: 363 EGFHHKYGADV---IRAYDPCLSCA 384
>gi|298530300|ref|ZP_07017702.1| nickel-dependent hydrogenase large subunit [Desulfonatronospira
thiodismutans ASO3-1]
gi|298509674|gb|EFI33578.1| nickel-dependent hydrogenase large subunit [Desulfonatronospira
thiodismutans ASO3-1]
Length = 450
Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats.
Identities = 57/449 (12%), Positives = 121/449 (26%), Gaps = 71/449 (15%)
Query: 10 TINFGPQHPAAHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
T+N P G + + LD V H+ L RG E+ + + + +R+
Sbjct: 4 TLNIAPIT-RIEGHASVAVHLDDTGNVSDARLHVLSL-RGFEQFVLGRPVEEVPRIVNRI 61
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG---- 124
+ P A A ++ LG+E+P G+ +R L + I +L+ A
Sbjct: 62 CGICPWQHHLASNKAADECLGLELPPTGRKLRELCQMMAYIPDKILHFYFLAAPDFVLGP 121
Query: 125 ---------------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL 169
R K + E+ +G +H GG + + E
Sbjct: 122 DSDYSVRNVVGIVGANPELAKKVVHMRYKGQMMLEKFAGKVIHPIAGVVGGFSKPLKEEE 181
Query: 170 VEDIGCWCDSFPSALNDISDLLTG--NRIFKQRNVNIGTVKLEDAWGWGF-SGVMIRGSG 226
++I + +G G + G
Sbjct: 182 RKEILQGIQELKEFSLFTIKFAREEVFPKYLDAVKVLGVFPSGYLGTVRPSDGALELYDG 241
Query: 227 AAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIR------------ 274
+ ++ Y+ + ++ IG+H + + + +K+
Sbjct: 242 ELRLMDQNGEYDQFKYSEYMNYIGEHTEPWSYLKFPYAKKWGDLKLDENDPVGVYRANTL 301
Query: 275 ------------------QCVNRLLGKNKVGPVSASDPKIVPP--KRADMKRSMESL-IH 313
+ G+ + +++ + + I
Sbjct: 302 ARINVCDQMATPKAQEELDIFRKEFGRPTHLTLLYHWARLIELVQACERAEELLNDPEIT 361
Query: 314 HFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK 373
++ + GE VEAP+G + +D + + M +
Sbjct: 362 GREIRCQDIQPRAGEGVGCVEAPRGTLIHHYQTDDNGFVTMANLIVGTTHNNAPMNLSVR 421
Query: 374 ---GHQLAD----------VSAILGSLDI 389
+ D V + + D
Sbjct: 422 QAAKAVIKDGNYDQGLLNRVEMAIRAYDP 450
>gi|199594756|gb|ACH90842.1| NADH dehydrogenase ubiquinone [Stenotrophomonas nitritireducens]
gi|199594758|gb|ACH90843.1| NADH dehydrogenase ubiquinone [Stenotrophomonas acidaminiphila]
Length = 148
Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats.
Identities = 88/148 (59%), Positives = 112/148 (75%)
Query: 17 HPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQ 76
HPAAHGVLRLILE+DGE + R DPH+GLLHR TEKL E+K F Q++ Y DRLDY + M
Sbjct: 1 HPAAHGVLRLILEMDGETIMRADPHVGLLHRATEKLAESKPFNQSIGYMDRLDYCSMMCN 60
Query: 77 EHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEER 136
EHAY A+E L GIE+P R Q IR ++ EI RIL+HL+ + + +D+GA+ L+ F ER
Sbjct: 61 EHAYVRAIETLAGIEVPERAQYIRTMFDEITRILNHLMWLGSNGLDLGAMAVMLYAFRER 120
Query: 137 EKLMVFYERASGSRMHAAYFRPGGVHQD 164
E+LM YE SG+RMHAAY+RPGGV++D
Sbjct: 121 EELMDCYEAVSGARMHAAYYRPGGVYRD 148
>gi|77464061|ref|YP_353565.1| hydrogenase large subunit [Rhodobacter sphaeroides 2.4.1]
gi|77388479|gb|ABA79664.1| hydrogenase large subunit [Rhodobacter sphaeroides 2.4.1]
Length = 475
Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats.
Identities = 68/473 (14%), Positives = 121/473 (25%), Gaps = 96/473 (20%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
GP + G L + LE+ V + L+RG E+++E + A+ R+ +
Sbjct: 6 VGPFN-RVEGDLEVHLEVAEGAVTAARVNAP-LYRGFERMLEGRDPRDALTITPRICGIC 63
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP--- 129
++Q A A A+ +G+ G+ + L + HL + M
Sbjct: 64 SISQSVAAARALGAAMGLAPAPAGERVAALIHAVENAADHLTHFNLFFMPDFTRPAYAGR 123
Query: 130 ------------------LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
R L+ +G H +PGGV +
Sbjct: 124 SWHGRALARFTAMEGSAQREAVAARADLLHILGLLAGKWPHTLAVQPGGVTRAPGAAERM 183
Query: 172 DIGCWCDSFPSALN--------------DISDLLTGN--------------------RIF 197
I SF L +I L
Sbjct: 184 RILSSLRSFRRHLERTLFGGPLEAFAALEIEAALLSWGRGDAGLFLEIAADLGLAGLGCG 243
Query: 198 KQRNVNIGTV-----KLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI--- 249
R ++ G A W + G + + +
Sbjct: 244 AGRYLSFGAYPLPEGPAFAAGTWQAGAPVPLDPGLIREDLSHAWMLGEAAHPSEGRTLPD 303
Query: 250 ---GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNK----VGPVSASDPKIVPPKRA 302
+ + + E+ + RQ V G ++ +++ R
Sbjct: 304 EEMREAAYSWCKAPRLDGRPMETGALARQVVAGHPLARDLARQGGVLARVGARLLELART 363
Query: 303 DMKRSMESLIHHFKL-----YTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKI 357
+ ME L G + VEA +G G ++ G R +I
Sbjct: 364 QIL--MEELAQGIDPAARFMVAMGPLPRDAQGAGLVEAARGALGHWVRLRG-GLIDRYQI 420
Query: 358 RAPGYAHLQ---------AMEFLCKGHQLA-------DVSAILGSLDIVFGEV 394
AP + +E G + V ++ S D
Sbjct: 421 VAPTTWNFSPRDAAGVPGPLEAALVGAPVEPGETTPLSVQHVVRSFDPCMVCT 473
>gi|225850467|ref|YP_002730701.1| hydrogenase large subunit [Persephonella marina EX-H1]
gi|225645793|gb|ACO03979.1| hydrogenase large subunit [Persephonella marina EX-H1]
Length = 457
Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats.
Identities = 65/446 (14%), Positives = 121/446 (27%), Gaps = 73/446 (16%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G ++L L + ++ L RG E ++E + L A+ R+ + + A
Sbjct: 12 VEGEIQLKLIWENRRIKDAFIQN-LNFRGFEFILENRPPLDALVITPRICGICGHSHLIA 70
Query: 80 YALAVEKLLG-----IEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA--------- 125
A+E + I+I + LIR + + I +H+ M
Sbjct: 71 TVKALEDIYRKNGYSIDISYKASLIRNVTHTVEIIQNHIRWFYLFVMPDFLKLEKDKDIL 130
Query: 126 -------LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
+++ SG H +Y PGGV D + + D
Sbjct: 131 EDFTPLKGDKWKKALGISNEILKIISILSGQWPHTSYAVPGGVMSDPINTDIVEAISITD 190
Query: 179 SFPSALND------------------------------ISDLLTGNRIFKQRNVNIGTVK 208
S + +L N + K +
Sbjct: 191 SVIRFFEEEIIGTDINTYLSVESFDQFMDKINKGDLRRFIELTFKNGMEKTGRAYDRFIT 250
Query: 209 LEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRE 268
++ GV + S R + + + + + E
Sbjct: 251 VDAILPCVREGVKKKRSCKFDPSRIKEVDSHSFLTKDGTDFSRKRYSWAKAVRYDGLPME 310
Query: 269 SVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD----MKRSMESLIHHFKLYTEGYHV 324
+ + R+ V++ + + R D M +++S + Y
Sbjct: 311 TGPLARKAVSKNSLFQDLISRFGDSYLVRIWARIDEIGRMALTLKSYLLSINTKEPSYIK 370
Query: 325 P-------VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL--------QAME 369
P GE +EA +G L K + I P +L E
Sbjct: 371 PPVKIENLEGEGTGLIEAARGSLLHRLEL-EKGKIKKYTIITPTTWNLGPRCERYHSPAE 429
Query: 370 FLCKGHQLA-DVSAILGSLDIVFGEV 394
G + + IL S D+
Sbjct: 430 KAIIGLESSLKAEMILRSFDVCSVCT 455
>gi|222445415|ref|ZP_03607930.1| hypothetical protein METSMIALI_01051 [Methanobrevibacter smithii
DSM 2375]
gi|222434980|gb|EEE42145.1| hypothetical protein METSMIALI_01051 [Methanobrevibacter smithii
DSM 2375]
Length = 408
Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats.
Identities = 60/385 (15%), Positives = 118/385 (30%), Gaps = 25/385 (6%)
Query: 21 HGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L++E+D E IV + RG EK++ K A R+ V P+ A
Sbjct: 17 EGHAELVMEVDDEGIVTKGRYLSITPVRGLEKMVAGKNPETAPVLCQRICGVCPIPHTLA 76
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILS----HLLNVTTQAMDVGALTPPLWGFEE 135
A++ L IE+P G+L+R + S H L + T
Sbjct: 77 SVEAIDHSLDIEVPKAGKLLRQATLAAHGVNSAAIHHFLIAPDFVPEEDFTTAVKSVSAV 136
Query: 136 REKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNR 195
R+ + + +G +H + R GG+ ++I + + +F + +L+
Sbjct: 137 RKNVQYVVDMLAGEGIHPSDIRVGGMARNITSATKDKLIDRLKAFKPDMEKHVELMKSFI 196
Query: 196 IFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDC 255
++ +G V G + + + P Y + +
Sbjct: 197 AARELPEGLGVVDAPLLASSASYGNLDEFDYDNFS--EVLPEAWYDDPEIGKK------- 247
Query: 256 YDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK--RADMKRSMESLIH 313
+ ++ + R +++ G G V+ + +E +
Sbjct: 248 -ACTTIPLINGKNVETGPRARMDKFNGFKDKGVVAQHVARAEEMLNNYNLTIDLLEQIDT 306
Query: 314 HFKLYTEGYHVPVGE-VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLC 372
+ G+ +E P+G K P ++ M
Sbjct: 307 SAPARADYDDRGTGKLGIGVIEGPRGTNVHMANVKDS-KIQFYSAIVPTTWNIPTMGPAT 365
Query: 373 KGHQL---ADVSAILGSLDIVFGEV 394
+G ADV + + D
Sbjct: 366 EGFHHKYGADV---IRAYDPCLSCA 387
>gi|288869648|ref|ZP_05975440.2| coenzyme F420 hydrogenase, subunit alpha [Methanobrevibacter
smithii DSM 2374]
gi|288860809|gb|EFC93107.1| coenzyme F420 hydrogenase, subunit alpha [Methanobrevibacter
smithii DSM 2374]
Length = 412
Score = 167 bits (422), Expect = 3e-39, Method: Composition-based stats.
Identities = 60/385 (15%), Positives = 118/385 (30%), Gaps = 25/385 (6%)
Query: 21 HGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L++E+D E IV + RG EK++ K A R+ V P+ A
Sbjct: 21 EGHAELVMEVDDEGIVTKGRYLSITPVRGLEKMVAGKNPETAPVLCQRICGVCPIPHTLA 80
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILS----HLLNVTTQAMDVGALTPPLWGFEE 135
A++ L IE+P G+L+R + S H L + T
Sbjct: 81 SVEAIDHSLDIEVPKAGKLLRQATLAAHGVNSAAIHHFLIAPDFVPEEDFTTAVKSVSAV 140
Query: 136 REKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNR 195
R+ + + +G +H + R GG+ ++I + + +F + +L+
Sbjct: 141 RKNVQYVVDMLAGEGIHPSDIRVGGMARNITSATKDKLIDRLKAFKPDMEKHVELMKSFI 200
Query: 196 IFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDC 255
++ +G V G + + + P Y + +
Sbjct: 201 AARELPEGLGVVDAPLLASSASYGNLDEFDYDNFS--EVLPEAWYDDPEIGKK------- 251
Query: 256 YDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK--RADMKRSMESLIH 313
+ ++ + R +++ G G V+ + +E +
Sbjct: 252 -ACTTIPLINGKNVETGPRARMDKFNGFKDKGVVAQHVARAEEMLNNYNLTIDLLEQIDT 310
Query: 314 HFKLYTEGYHVPVGE-VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLC 372
+ G+ +E P+G K P ++ M
Sbjct: 311 SAPARADYDDRGTGKLGIGVIEGPRGTNVHMANVKDS-KIQFYSAIVPTTWNIPTMGPAT 369
Query: 373 KGHQL---ADVSAILGSLDIVFGEV 394
+G ADV + + D
Sbjct: 370 EGFHHKYGADV---IRAYDPCLSCA 391
>gi|218782784|ref|YP_002434102.1| nickel-dependent hydrogenase large subunit [Desulfatibacillum
alkenivorans AK-01]
gi|218764168|gb|ACL06634.1| F420-non-reducing hydrogenase, iron-sulfur subunit, MvhA
[Desulfatibacillum alkenivorans AK-01]
Length = 449
Score = 167 bits (422), Expect = 3e-39, Method: Composition-based stats.
Identities = 61/438 (13%), Positives = 101/438 (23%), Gaps = 69/438 (15%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G + +ELD V + L RG EK +E K + R+ + P
Sbjct: 13 IEGHASIGIELDDNGNVSDARVNFMSL-RGFEKFVEGKPAEELPRIVSRICGICPWMHHL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A AVE G G +R L + LL+ A
Sbjct: 72 ASTKAVEGCFGATPTPTGSRLRELMQTLAHAEDKLLHFFFLAAPDFVMGPDADYSVRNVI 131
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
R+K + +R S +H PGG + + E D+
Sbjct: 132 GIVKSNPELATQAVRMRQKAKMILDRFSKKTIHPVAGVPGGFCKPLTEEDRVDMLAQTRE 191
Query: 180 FPSALNDISDLLTG--NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA---------- 227
DL + +GT+ G + G
Sbjct: 192 IMDFALFTMDLAKNEIFPQYLDVIKELGTITTGFLGTVDKEGALNLYDGRLRLMQPSGEF 251
Query: 228 -AWDLRKSQPYECYSELDFDI----------------PIGKHGDCYDRYLVRMMEMRESV 270
+D Y + F P G L R+ +
Sbjct: 252 EEFDAADYTDYLAEKVVPFSYGKFPYARRWNEGFSLDPDNPKGIYRANTLARINVADKMA 311
Query: 271 KIIRQC----VNRLLGKNKVGPVSASDPKIVP--PKRADMKRSMESLIHHFKLYTEGYHV 324
Q G+ + +++ +E
Sbjct: 312 TPRAQAELEEFRAAFGRPAQATLLYHYARLIEEVYACERAVEILEDKEITNPDVRAHVEP 371
Query: 325 PVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGH---QLAD-- 379
G VEAP+G +D + +L + + D
Sbjct: 372 GAGRGVGCVEAPRGTLIHDYSTDENGLITSANLIVGTTHNLGPINLSVHRAAKDLIKDGV 431
Query: 380 --------VSAILGSLDI 389
+ + + D
Sbjct: 432 VTEGILNRIEMAVRAYDP 449
>gi|141950|gb|AAC06143.1| NAD-reducing hydrogenase [Ralstonia eutropha H16]
Length = 488
Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats.
Identities = 58/454 (12%), Positives = 124/454 (27%), Gaps = 83/454 (18%)
Query: 20 AHGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++++ LD + V H+ + RG EK ++ F +A + R+ + ++
Sbjct: 13 IEGHGKVVVHLDDDNKVVDAKLHV-VEFRGFEKFVQGHPFWEAPMFLQRICGICFVSHHL 71
Query: 79 AYALAVEKL------LGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------- 124
A A++ + GI + + +R L + SH +
Sbjct: 72 CGAKALDDMVGVGLKSGIHVTPTAEKMRRLGHYAQMLQSHTTAYFYLIVPEMLFGMDAPP 131
Query: 125 -----------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDI 173
R+ + G +MH PGGV+ ++ +
Sbjct: 132 AQRNVLGLIEANPDLVKRVVMLRKWGQEVIKAVFGKKMHGINSVPGGVNNNLSIAERDRF 191
Query: 174 GC------WCDSFPSALNDISDLLTGNRIFKQRNVNIG--------TVKLEDAWGWGFSG 219
D D L + V+ + +D + G
Sbjct: 192 LNGEEGLLSVDQVIDYAQDGLRLFYDFHQKHRAQVDSFADVPALSMCLVGDDDNVDYYHG 251
Query: 220 VMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVK-------- 271
+ +R+ ++ F + + YL + + SV+
Sbjct: 252 RLRIIDDDKHIVREFDYHDYLDH--FSEAVEEWSYMKFPYLKELGREQGSVRVGPLGRMN 309
Query: 272 --------IIRQCVNRLLGKNKVG------PVSASDPKIVPPKRADMKRSM--ESLIHHF 315
+ ++ + R K + + + +K + L
Sbjct: 310 VTKSLPTPLAQEALERFHAYTKGRTNNMTLHTNWARAIEILHAAEVVKELLHDPDLQKDQ 369
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME------ 369
+ T + GE VEAP+G + +D + + Q M
Sbjct: 370 LVLTPPPNAWTGEGVGVVEAPRGTLLHHYRADERGNITFANLVVATTQNHQVMNRTVRSV 429
Query: 370 ---------FLCKGHQLADVSAILGSLDIVFGEV 394
+ +G A + + + D
Sbjct: 430 AEDYLGGHGEITEGMMNA-IEVGIRAYDPCLSCA 462
>gi|284038745|ref|YP_003388675.1| nickel-dependent hydrogenase large subunit [Spirosoma linguale DSM
74]
gi|283818038|gb|ADB39876.1| nickel-dependent hydrogenase large subunit [Spirosoma linguale DSM
74]
Length = 531
Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats.
Identities = 64/512 (12%), Positives = 131/512 (25%), Gaps = 130/512 (25%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+N P G L + + ++ +V R + RG EK++E K + R+
Sbjct: 6 ELNISPV-GRVEGDLDVKVYMEDGVVTRAHTQAA-MFRGFEKIMEGKDPQAGLIVTPRIC 63
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA---- 125
+ + + + A++ +P L+R + I S A
Sbjct: 64 GICGGSHLYCASSALDTAWKTTLPPNALLLRAIGQATETIQSIPRWFYAIFATDMANKKF 123
Query: 126 -----------------LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE 168
T G + + Y G H++Y PGGV +
Sbjct: 124 ANKPLYDEVVKRFAAYVGTSFQRGVTASGRPVEVYALFGGQWPHSSYMVPGGVMCAPTLK 183
Query: 169 LVEDIGCWCDSFPSA-------------------LNDISDLLTGNRIFKQRNVNIGTVKL 209
+ + F +D+ + N + ++ +
Sbjct: 184 DITRAHAIMNQFRKDWLETLWLGCSIERYMQIKTWDDLMAWVEENDSQRNSDLGLFIRAS 243
Query: 210 -EDAWGWGFSGVMIRGSGAAWDLRKSQ----------------------PYECYSELDFD 246
E GV + + + Y + L
Sbjct: 244 LEFGLHKFGQGVGKFVAYGTYLHKDHYQKPTVEGRNAALISRSGFFDGSKYHVFDHLSIK 303
Query: 247 IPIG--KHGDCYD-----------------------------RYLVRMMEMRESVKIIRQ 275
+G + D + M E+ + R
Sbjct: 304 EHVGHAWYKDVPAAHPWDEPMPTPLQSHTLHDSNFNEKYSWSKAPRYMDMAAEAGPLARV 363
Query: 276 CVNRLLGK---------------NKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTE 320
+N +K+G + + A + ++ + L +E
Sbjct: 364 IMNANPDNLLPHQVYDPLFGDVLDKMGANVFTRTLARVHEAARLYTQIDEWLRQIDLNSE 423
Query: 321 GYHVPV---GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAM 368
Y P G+ + A EA +G ++ ++ AP ++ +
Sbjct: 424 FYIKPEERDGKGFGATEAARGALAHWIEI-ENGVIKNYQVMAPTTWNVGPNDDRGNPGPI 482
Query: 369 EFLCKGHQLAD------VSAILGSLDIVFGEV 394
E +G ++ D V + S D
Sbjct: 483 EAALEGTEIEDPHDPVEVGMVARSFDSCLVCT 514
>gi|217978884|ref|YP_002363031.1| nickel-dependent hydrogenase large subunit [Methylocella silvestris
BL2]
gi|217504260|gb|ACK51669.1| nickel-dependent hydrogenase large subunit [Methylocella silvestris
BL2]
Length = 488
Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats.
Identities = 61/438 (13%), Positives = 128/438 (29%), Gaps = 65/438 (14%)
Query: 20 AHGVLRLILELD--GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQE 77
G ++ + L+ GE VE+ HI + RG E+ I+ + + + RL + P++
Sbjct: 26 VEGHGKVTIRLNEAGE-VEQARFHI-VEFRGFERFIQGRLYWEVPVIVQRLCGICPVSHH 83
Query: 78 HAYALAVEKLLGIE-IPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV------------- 123
A++ + G++ + + +R L + S+ LN A
Sbjct: 84 LGAGKAMDAIAGVDRLTPTAEKMRRLMHYGQVLQSNALNFFHLASPDLLLGFEAPVAQRN 143
Query: 124 ------GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWC 177
W R+ G R+H PGGV+Q++ E + +
Sbjct: 144 IIGVIEAFPEVGKWAIFIRKFGQQVIAATGGRRIHPRLCIPGGVNQNLTVENRDALRKDI 203
Query: 178 DSFPSALNDISDLLTGN-RIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSG---------- 226
D + +L R + + + G G M G
Sbjct: 204 DPIIQWCGEALELHKSFIRSHETLHETFASFPSSYMSLVGADGGMDLYDGALRAIDAGGK 263
Query: 227 -----------AAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQ 275
+ + + + + + G L ++ I +
Sbjct: 264 PIFDGVPPVDYRDYLIEEVRSWSYMKFPHIRSLGREDGWYRVGPLAQLNCCAFIGTPIAE 323
Query: 276 CVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIH-HFKLYTEGYHV-----PVGEV 329
+ G + + M E++ + F +G + E
Sbjct: 324 AARKDFMALGHGGPVHATLAYHWARLIVMIHCAETIKNLLFDDDLQGTDLVVSGERRSEG 383
Query: 330 YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFL--------CKGHQLAD-- 379
A +EAP+G + D ++ + + +AM GH++ +
Sbjct: 384 VAIIEAPRGTLLHHYAVDDNDQVTAANLIVSTTHNNEAMNRSVTKVAVDDLTGHEITEGL 443
Query: 380 ---VSAILGSLDIVFGEV 394
+ + + D
Sbjct: 444 LNHIEVAIRAYDPCLSCA 461
>gi|119510364|ref|ZP_01629499.1| Nickel-dependent hydrogenase, large subunit [Nodularia spumigena
CCY9414]
gi|119465001|gb|EAW45903.1| Nickel-dependent hydrogenase, large subunit [Nodularia spumigena
CCY9414]
Length = 483
Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats.
Identities = 60/444 (13%), Positives = 114/444 (25%), Gaps = 71/444 (15%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD V H+ RG EK E + + R+ + P++
Sbjct: 13 IEGHAKISIYLDDTGQVSDARFHV-TEFRGFEKFCEGRPLWEMPGITARVCGICPVSHLL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV--------------- 123
A A A +++L + IP + +R L + I SH L+ +
Sbjct: 72 ASAKAGDRILSVTIPKAAEKLRRLMNLAQIIQSHSLSFFHLSAPDLLLGMDSDPAKRNIF 131
Query: 124 ----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ E+ G ++H ++ PGGV + + PE I
Sbjct: 132 GLIAAEPELARGGIRLRQFGQEIIEQLGGQKIHPSWAVPGGVREALSPEGRTHIQNRIPE 191
Query: 180 FPSALNDISDLLTG-NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLR------ 232
+ + + ++Q G G+ G +
Sbjct: 192 ARTTILNALSRFKELLNNYQQEAQTFGNFPSLFMGLVTPEGLWENYDGNIRFVDSAGNII 251
Query: 233 -----------------KSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQ 275
+S Y + + C + + + I Q
Sbjct: 252 ADQLDPTNYQEFIGEAVESHSYLKFPYYRPLGYPDQSDHCNLNSGIYRVGPLARLNICSQ 311
Query: 276 ---------CVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV 326
S + +E L+ L +
Sbjct: 312 IGTPLADVELREYRDRGKGTVNSSFFYHYARLIEILASIERIEILLDDPDLLSNRLRAEA 371
Query: 327 G----EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH--------LQAMEFLCKG 374
G EAP+G + D + + + Q G
Sbjct: 372 GINQLSGVGVSEAPRGTLFHHYQVDENGLMQKVNLIIATGQNNLGMNRTVAQIARHFING 431
Query: 375 HQLAD-----VSAILGSLDIVFGE 393
+++ V A + + D
Sbjct: 432 AEISQGILNRVEAGIRAFDPCLSC 455
>gi|116751371|ref|YP_848058.1| nickel-dependent hydrogenase large subunit [Syntrophobacter
fumaroxidans MPOB]
gi|116700435|gb|ABK19623.1| F420-non-reducing hydrogenase subunit A [Syntrophobacter
fumaroxidans MPOB]
Length = 449
Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats.
Identities = 57/447 (12%), Positives = 108/447 (24%), Gaps = 70/447 (15%)
Query: 11 INFGPQHPAAHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
IN P G + ++LD V+ H L RG EK +E K + +R+
Sbjct: 5 INIQPVT-RIEGHASIAIQLDDRGEVQDSRVHFMSL-RGFEKFVEGKPAEELPRIVNRIC 62
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG----- 124
+ P A AV++ G+ P G+ +R L I +L+ A
Sbjct: 63 GICPWQHHLASNKAVDRCFGVTPPPAGRKLRELMQAISHSEDKILHFYFLAAPDFVMGPD 122
Query: 125 --------------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELV 170
R + E+ +G +H GG + + E
Sbjct: 123 SDYGVRNVIGVAKAHPELAGRVVRMRYATKMILEKFAGKAIHPHAGVVGGFSRVLLEEDR 182
Query: 171 EDIGCWCDSFPSALNDISDLLTG--NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSG-- 226
+ D + ++G + G + G
Sbjct: 183 REFLGKMKEMLEFALFTIDFAKTQVFPKYLDAVASLGVINTGFIGTVDDHGALNLYDGKI 242
Query: 227 ---------AAWDLRKSQPYECYSELDFDIPIGKHGDCY----------------DRYLV 261
+D + Y + C+ L
Sbjct: 243 RLMKPDGSFVDFDPQDYLDYLGEHVEPHSYGKFPYARCWNEGFSLDPLQPRGIYRANTLA 302
Query: 262 RMMEMRESVKIIRQC----VNRLLGKNKVGPVSASDPKIVP--PKRADMKRSMESLIHHF 315
R+ + Q G+ + +++ +E
Sbjct: 303 RINVADKMATPRAQAELEEFREKFGRPAQFTLLHHWARLIEEVYACEHAIELLEDPEITD 362
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLC--- 372
G +EAP+G +D + + +L +
Sbjct: 363 PNVRAKVEPKAGRGVGCLEAPRGTLIHDYTTDSAGMVTKANMIVGTTHNLGPISLSVNQA 422
Query: 373 ------KG----HQLADVSAILGSLDI 389
+G L + + + D
Sbjct: 423 ARTLIQRGVVDETILNKIEMAVRAYDP 449
>gi|303245123|ref|ZP_07331439.1| coenzyme F420 hydrogenase, subunit alpha [Methanothermococcus
okinawensis IH1]
gi|302484506|gb|EFL47454.1| coenzyme F420 hydrogenase, subunit alpha [Methanothermococcus
okinawensis IH1]
Length = 410
Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats.
Identities = 59/405 (14%), Positives = 114/405 (28%), Gaps = 31/405 (7%)
Query: 6 SRSFTINFGPQHPAA--HGVLRLILELDGEIVER------VDPHIGLLHRGTEKLIETKT 57
++ IN P G +L+L++D E + V P RG E+ +E K
Sbjct: 2 GKTVEIN-----PTTRHEGHTKLVLKVDDEGIVEKGAYLSVTPV-----RGFERFLEGKP 51
Query: 58 FLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVT 117
A R + + A A+E GI P G L+R L ++ SH L+
Sbjct: 52 AEFAPLAVMRFCGICQSAHGISSAEAIEDACGIIPPKDGLLLRELLGIGNKMHSHPLHQF 111
Query: 118 ----TQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDI 173
+ + R+ + G +H + GG+ ++I + I
Sbjct: 112 LVSPDFVPEKDKVEFIKRVQAMRKVGQYICDVVGGEAIHPPNIKIGGMAKNITESVRSKI 171
Query: 174 GCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRK 233
C + + D L + E G+ + + R
Sbjct: 172 YYKCKKYEKLAKEQIDYLIPIFESRALADGT-----ELPEKLGYHDFGYIATHPTYGDRT 226
Query: 234 SQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASD 293
+ E K + + R + R N+ + G ++
Sbjct: 227 KIDQDNVVEYTPFDVYEKEVALQASTTIPTLNGRLAEVGPRARFNKFFDFKEKGAMAIHI 286
Query: 294 PKIVP--PKRADMKRSMESLIHHFKLYTEGYHVPVGE--VYAAVEAPKGEFGVYLISDGG 349
+ ++ L + K + + GE EA +G D
Sbjct: 287 ARAYELIVLVKRAMEIVDELNVNGKTLSNEPIIGDGEKVGLGVHEAARGHNTHQASIDKN 346
Query: 350 NKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEV 394
+ ++ + +G ++ + D
Sbjct: 347 GRITYYNAIVATTWNIPLIGKAIEGSHYKFAEHVVRAYDPCVSCA 391
>gi|213400905|gb|ACJ47101.1| NADH dehydrogenase subunit D [Wolbachia endosymbiont of
Nasutitermes nigriceps]
Length = 193
Score = 166 bits (420), Expect = 6e-39, Method: Composition-based stats.
Identities = 117/197 (59%), Positives = 152/197 (77%), Gaps = 4/197 (2%)
Query: 116 VTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGC 175
+++QAMDVGA+TP LW FEEREK++VFYERASG+R HAAY RPGGV D+P L+EDI
Sbjct: 1 ISSQAMDVGAITPLLWLFEEREKILVFYERASGARFHAAYIRPGGVAADVPEGLIEDIAK 60
Query: 176 WCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQ 235
+ + FP ++D+ +LLT NRI+KQR V I + ++ A WGFSG M+R +G AWDLRKSQ
Sbjct: 61 FIEQFPQYIDDVDELLTENRIWKQRTVGISEISIKQALDWGFSGPMLRAAGLAWDLRKSQ 120
Query: 236 PYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPK 295
PYE Y +LDFDIPIG++GDCYDRYLVRM E+R+S+ +++QC+ ++ GPV D K
Sbjct: 121 PYEIYDQLDFDIPIGQNGDCYDRYLVRMAEIRQSISLVKQCIEKM----PEGPVKTEDRK 176
Query: 296 IVPPKRADMKRSMESLI 312
I PP RA+MK SME+LI
Sbjct: 177 ISPPPRAEMKTSMEALI 193
>gi|319790091|ref|YP_004151724.1| nickel-dependent hydrogenase large subunit [Thermovibrio
ammonificans HB-1]
gi|317114593|gb|ADU97083.1| nickel-dependent hydrogenase large subunit [Thermovibrio
ammonificans HB-1]
Length = 390
Score = 165 bits (419), Expect = 7e-39, Method: Composition-based stats.
Identities = 74/387 (19%), Positives = 123/387 (31%), Gaps = 19/387 (4%)
Query: 18 PAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQE 77
P G L LE++ V+R + + RG E L+ K A R+ + +
Sbjct: 11 PLTEGHSGLFLEVENGTVKRGFYYALVPVRGFETLLVGKDATVAPVLTSRICGLCQVTHS 70
Query: 78 HAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGF---- 133
A A AVE IE+P + +L+R L R+ ++LL+ + D+ F
Sbjct: 71 IAAARAVEAACNIEVPPKAELLRELLGLAVRVYNNLLHQIVVSEDLFPQKDEQLAFIRQV 130
Query: 134 -EEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLT 192
R+ E G +H+ + GGV + I P L E + ++ L D +
Sbjct: 131 QRIRKVAGELLESIGGEIIHSPNVKVGGVAEAIEPRLQEKLLKTVEATLPLLRDSLESFK 190
Query: 193 GNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKH 252
+ + + + + + G D + Q + +P
Sbjct: 191 EGLNSLWKREGLPEELGKHSLPFFATDRFY---GKPVDFNRFQ----FKMPQELLPGELK 243
Query: 253 GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLI 312
+ + E+ R+ + G G V KR E L
Sbjct: 244 RRATNLFPFPNGRAVETGPRARKVL--FEGYKPKGGVKELHLLRALENLEAFKRIEEILS 301
Query: 313 HH---FKLYTEGYHVPVGE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
H +L GE EAP+G + D K KI P + A
Sbjct: 302 EHSFNRELLNRTAPSSDGERLGIGVHEAPRGTNIHAVKVDKSGKIIYYKIVVPTEINFSA 361
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEV 394
+ KG I+ + D
Sbjct: 362 IAEALKGAPAKAAEFIVRAYDPCIVCA 388
>gi|213400913|gb|ACJ47105.1| NADH dehydrogenase subunit D [Wolbachia endosymbiont of
Dipetalonema gracile]
Length = 188
Score = 165 bits (419), Expect = 9e-39, Method: Composition-based stats.
Identities = 112/192 (58%), Positives = 145/192 (75%), Gaps = 4/192 (2%)
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+DVGA+TP LW FEEREK++ FYERASG+R HAAY RPGG+ DIP L+EDI + + F
Sbjct: 1 LDVGAMTPLLWLFEEREKILEFYERASGARFHAAYIRPGGIAADIPEGLIEDIAKFIEQF 60
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P ++DI +LLT NRI+KQR V I + ++ WGFSG M+R +G AWDLRKSQPYE Y
Sbjct: 61 PKYIDDIDELLTENRIWKQRTVGISEMSIKQVLDWGFSGPMLRAAGLAWDLRKSQPYEIY 120
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+L+FDIPIG+ GDCYDRYLVRM E+R+S+ +++QC+ ++ GPV D KI PP
Sbjct: 121 DQLNFDIPIGRSGDCYDRYLVRMEEIRQSISLVKQCIEKM----PEGPVKTEDRKISPPP 176
Query: 301 RADMKRSMESLI 312
RA+MK+SME+LI
Sbjct: 177 RAEMKKSMEALI 188
>gi|307354848|ref|YP_003895899.1| nickel-dependent hydrogenase large subunit [Methanoplanus
petrolearius DSM 11571]
gi|307158081|gb|ADN37461.1| nickel-dependent hydrogenase large subunit [Methanoplanus
petrolearius DSM 11571]
Length = 458
Score = 165 bits (419), Expect = 9e-39, Method: Composition-based stats.
Identities = 71/442 (16%), Positives = 127/442 (28%), Gaps = 59/442 (13%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
+ TIN P G R+ + LD V+ + L RG EK + +A
Sbjct: 2 KEITIN--PVT-RIEGHARVKINLDDSGNVDNAHFEVVEL-RGFEKFMIGAAVEEAPRIT 57
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG- 124
R+ + P A A A +++ G P G+ +R L I SH L+ A
Sbjct: 58 PRICGICPTAHHIAAAKACDEIFGAAPPATGKKLRELLMVGQFIHSHSLHFFMLAAPDFL 117
Query: 125 ------------------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIP 166
A E R+ E G +H + PGGV +
Sbjct: 118 IGHDAPAAERSVLGLVKKAPDIAKKAIEVRKFGQRMTEAIGGKPIHPSTCIPGGVSHPLA 177
Query: 167 P----ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG--- 219
EL+E ++ + +L + ++ + G
Sbjct: 178 ESKRLELLEMSKKSLETAREGWSIARTILDQTDLSFGAVDTAFMGMSDNGRFSAYKGEVN 237
Query: 220 -------VMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKI 272
+ SGA + + E +S L F G L R+ ++E
Sbjct: 238 VVGKDGSPVSAFSGADYLNLIEEYSEDWSYLKFSRLKGGD-YYRVGPLARLNIVKEMGTP 296
Query: 273 IRQCV----NRLLGKNKVGPVSASDPKIVP---PKRADMKRSMESLIHHFKLYTEGYHVP 325
G+ ++ + + + ++ + I + T V
Sbjct: 297 EADAALTEYRSTFGEFTQTTLAYNMARYIEFLSCCEKAVEYLSDPSICGGDVRTPVSGVS 356
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME--------FLCKGHQL 377
VEAP+G D C + + M+ + G L
Sbjct: 357 KLRGVGIVEAPRGTLIHDYSVDEEGFITDCNLIVATCQNNFGMDRGVEDVARKVVSGGSL 416
Query: 378 AD-----VSAILGSLDIVFGEV 394
++ + ++ + D
Sbjct: 417 SESAANRIEMVIRAYDPCISCA 438
>gi|2072171|gb|AAB53705.1| bidirectional hydrogenase large subunit [Prochlorothrix hollandica]
Length = 482
Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats.
Identities = 62/440 (14%), Positives = 110/440 (25%), Gaps = 71/440 (16%)
Query: 20 AHGVLRLILELDG-EIVERV-DPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQE 77
G+ ++ + LD V+ H+ + +RG EK E + + + R+ + P++
Sbjct: 13 IEGLAKISIFLDDAGKVDDAARFHV-VEYRGFEKFCEGRAYTEMAGITARICGICPVSHL 71
Query: 78 HAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG------------- 124
A A +K+L +++PI + +R L + SH L+ +
Sbjct: 72 LAAAKTGDKILAVKVPIAAEKLRRLMNLAQLTQSHALSFFHLSSPDFLLGWDSDPARRNV 131
Query: 125 ------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
G R+ E ++HAA+ PGGV + E + I
Sbjct: 132 FGLIDANPDLARAGIRLRQFGQTIIELLGARKIHAAWTVPGGVRSPLTEESRQWILDRLP 191
Query: 179 SFPSALNDISDLL--TGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA--------- 227
+ L DL ++ K G G G
Sbjct: 192 ESFATLQTALDLFKGLLDKALKDEVGIFGEFPSLFMSLVAADGAWEHYGGHLRFVDGQGT 251
Query: 228 --------------------AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMR 267
W K Y +G + R
Sbjct: 252 IVADNLSEDNYLDFLGEGVEKWSYLKFPYYRPLGYPAGIYRVGPLARLN--TCSHIGTPR 309
Query: 268 ESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVG 327
++ + + + M V
Sbjct: 310 ADAELGEMSPRFHAPVTSSFLYHYARLIEILACLEKIHHLMADPDLLSNRCRATGGVNEL 369
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLAD-------- 379
E EAP+G + D + + + AM Q+A
Sbjct: 370 EAVGVSEAPRGTLFHHYKVDENGLIEKVNLIIATGQNNLAMNKTV--TQIAKHYPRSRYS 427
Query: 380 ------VSAILGSLDIVFGE 393
V A + D
Sbjct: 428 RSFLNRVEAGIPCYDPCLSC 447
>gi|171058032|ref|YP_001790381.1| nickel-dependent hydrogenase large subunit [Leptothrix cholodnii
SP-6]
gi|170775477|gb|ACB33616.1| nickel-dependent hydrogenase large subunit [Leptothrix cholodnii
SP-6]
Length = 509
Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats.
Identities = 60/486 (12%), Positives = 113/486 (23%), Gaps = 114/486 (23%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + + L+ +V G ++RG E+++ +T A+ R+ + +A
Sbjct: 13 VEGDLSIQVTLEDGVVVAAR-TAGTMYRGFEQILLGRTPRDAMVITPRVCGICGTAHLYA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV---------------- 123
LA+E+ +P IR L + + L
Sbjct: 72 GVLALEQAWNTPVPPNATRIRNLCLIAEGLQNDLRQTFLFFAPDLCHPRYAGDVLFEPMM 131
Query: 124 -----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
+++ G H++Y PGGV + D
Sbjct: 132 RAFEPFKGDIYRETLAMTRRVLEIVAHFGGQWPHSSYMLPGGVVTPPDTRRLIACRSVID 191
Query: 179 SFPSA------------------LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGV 220
+ + + L I G
Sbjct: 192 QLQRWYEQRIIGAGLDEWMALGSADALFEWLERPGPANAALGLITRFLRSQGMHRLGIGT 251
Query: 221 MIRGSGAAW--DLRKSQPYECY--------------------------SELDFDIPIG-- 250
S AW R PY+ + F G
Sbjct: 252 PHMISFGAWCDPQRWGPPYDAHLLPGGFYDSDSGQVQPLDPSLVTEHVRHSWFKPYEGGR 311
Query: 251 --------------KHGDCYDRYLVRMMEMRESVKIIR------QCVNRLLGKNKVGPVS 290
+ + + ++ + V L G
Sbjct: 312 HPYEGETVPDYQPDSDRYSWAKAPRYGGRVVQTGPLAELLIGGDALVRDLHATEGAGAWL 371
Query: 291 ASDPKIVPPKRA--DMKRSMESL-----IHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVY 343
++ +R ++ L HF G V G+ V A +G G +
Sbjct: 372 RQFSRVRRIGFELRQARRMLDELGAHLGEPHFVPPAPGTEV-DGQGCGLVMAARGALGHW 430
Query: 344 LISDGGNKPYRCKIRAPGYAHLQA---------MEFLCKGHQLAD------VSAILGSLD 388
+ + +I P + E G ++ D + ++ S D
Sbjct: 431 VRI-ENGVIQKYQIVTPTAWNASPRDSDGVPGHWESSLVGLKVQDPDDPIEIGHLIRSHD 489
Query: 389 IVFGEV 394
Sbjct: 490 PCLVCT 495
>gi|329912141|ref|ZP_08275698.1| NAD-reducing hydrogenase subunit HoxH [Oxalobacteraceae bacterium
IMCC9480]
gi|327545687|gb|EGF30834.1| NAD-reducing hydrogenase subunit HoxH [Oxalobacteraceae bacterium
IMCC9480]
Length = 488
Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats.
Identities = 63/457 (13%), Positives = 128/457 (28%), Gaps = 89/457 (19%)
Query: 20 AHGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ +ELD + V + + RG EK ++ + +A R+ + ++
Sbjct: 13 IEGHGKVTIELDDDNKVIDAKLLV-VEFRGFEKFVQGHPYWEAPMLLQRICGICFVSHHL 71
Query: 79 AYALAVEKLLGIE------IPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------- 124
A ++ ++G+ I + +R L ++ SH +
Sbjct: 72 CGAKVLDDMIGVGYATNNLITPTAEKMRRLGHYAQQLQSHATAYFYLIVPEMLFGMDAAP 131
Query: 125 -----------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVED- 172
R+ + G +MH PGGV+ ++ + +
Sbjct: 132 EQRNVLGLAVADPGLVKRVVMLRKWGQELIQAVLGKKMHGISSIPGGVNNNLTAAVRDRF 191
Query: 173 ---------IGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIR 223
I D L D NR+ G D +G +
Sbjct: 192 INGDATIPSIDQMLDYAQEGLQLFYDFHEKNRVLVD---TFGDAPALDMCLVDDNGDVDY 248
Query: 224 GSG----AAWDLRKSQPYECYSELD-FDIPIGKHGDCYDRYLVRMMEMRE---------- 268
G D R + + + LD F + Y ++ RE
Sbjct: 249 YHGKMRIIDNDKRIVRELDYHDYLDHFSEATEEW--SYMKFPFLKDLGREQGSVRVGPLA 306
Query: 269 --------SVKIIRQCVNRLLGKNKVG------PVSASDPKIVPPKRADMKRSMES--LI 312
S + + + + NK + + + +K+ + L
Sbjct: 307 RVNVTRSYSTPLAQVALEKFHAYNKGKSSNKTLHTNWARAIEILHSAELIKQLLNDPDLQ 366
Query: 313 HHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME--- 369
+ + + GE VEAP+G + +D + C + + Q M
Sbjct: 367 KDQLVVSATPAMWTGEGVGVVEAPRGTLLHHYRADTEGQITFCNLVVATTQNNQVMNRTV 426
Query: 370 ------------FLCKGHQLADVSAILGSLDIVFGEV 394
+ +G A + + + D
Sbjct: 427 RSVAEEYLNGKAEITEGMMNA-IEVGIRAYDPCLSCA 462
>gi|323139222|ref|ZP_08074277.1| nickel-dependent hydrogenase large subunit [Methylocystis sp. ATCC
49242]
gi|322395520|gb|EFX98066.1| nickel-dependent hydrogenase large subunit [Methylocystis sp. ATCC
49242]
Length = 483
Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats.
Identities = 65/479 (13%), Positives = 123/479 (25%), Gaps = 100/479 (20%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
GP + G L + L++ + V + L+RG E+++ + A+ R+ +
Sbjct: 6 VGPFN-RVEGDLEIALDIADDAVVSARVTVP-LYRGFEQILVGRPAPDALVIAPRICGIC 63
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP--- 129
++Q A A A+ L G+ G + L + HL + M A
Sbjct: 64 SVSQSMAAAAALRALCGLTPARNGLIAANLAHAAENMADHLTHFYLFFMPDFARAQYAQE 123
Query: 130 ------------------LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
+ R++L+ +G H+ F+PGG + I L
Sbjct: 124 SWFVDVERRFKAVSGSAGNEVLQARKRLLEIMGVLAGKWPHSLAFQPGGTTRAIDLGLKT 183
Query: 172 DIGCWCDSFPSALN-------------------------------DISDLLTGNRIFKQR 200
+ F L D L +
Sbjct: 184 QLIGVTRDFRRFLETVLFAAPLGDVLAIETPEQLENYAESSGARGDFQSFLRIAQALDLE 243
Query: 201 NVNIGTVKLEDAWGWGFSGVMIRGSGA--------------------AWDLRKSQPYECY 240
+ + L + G G A + +
Sbjct: 244 RLGVAANALLSYGAYRDDGGAFLKEGIFDPATRTLSPLDAAAIREDVAHAWMRDGSDDPA 303
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL-------GKNKVGPVSASD 293
+ + + M E + R V+ +S
Sbjct: 304 TARTEPYAEKPDAYSWAKAPRLMGRPAEVGAVARLAVHGHPLIRALLARSRGSNVLSRVT 363
Query: 294 PKIVPPKRAD--MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNK 351
+++ + ++L G+ + VEA +G G + +S K
Sbjct: 364 ARLIELAILADTAENWAKALALAEPFCVPAPADAEGQSFGLVEAARGSLGHW-MSARKGK 422
Query: 352 PYRCKIRAPGYAHLQ---------AMEFLCKGHQ-------LADVSAILGSLDIVFGEV 394
+I AP + +E G A V ++ S D
Sbjct: 423 IRNYQIIAPTTWNFSPRDARGVAGPVEQALTGSPLAGLGARAAAVQHVVRSFDPCMVCT 481
>gi|258541875|ref|YP_003187308.1| NADH-ubiquinone oxidoreductase 49kDa subunit [Acetobacter
pasteurianus IFO 3283-01]
gi|256632953|dbj|BAH98928.1| NADH-ubiquinone oxidoreductase 49kDa subunit [Acetobacter
pasteurianus IFO 3283-01]
gi|256636010|dbj|BAI01979.1| NADH-ubiquinone oxidoreductase 49kDa subunit [Acetobacter
pasteurianus IFO 3283-03]
gi|256639065|dbj|BAI05027.1| NADH-ubiquinone oxidoreductase 49kDa subunit [Acetobacter
pasteurianus IFO 3283-07]
gi|256642119|dbj|BAI08074.1| NADH-ubiquinone oxidoreductase 49kDa subunit [Acetobacter
pasteurianus IFO 3283-22]
gi|256645174|dbj|BAI11122.1| NADH-ubiquinone oxidoreductase 49kDa subunit [Acetobacter
pasteurianus IFO 3283-26]
gi|256648229|dbj|BAI14170.1| NADH-ubiquinone oxidoreductase 49kDa subunit [Acetobacter
pasteurianus IFO 3283-32]
gi|256651282|dbj|BAI17216.1| NADH-ubiquinone oxidoreductase 49kDa subunit [Acetobacter
pasteurianus IFO 3283-01-42C]
gi|256654273|dbj|BAI20200.1| NADH-ubiquinone oxidoreductase 49kDa subunit [Acetobacter
pasteurianus IFO 3283-12]
Length = 498
Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats.
Identities = 79/377 (20%), Positives = 125/377 (33%), Gaps = 35/377 (9%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
+GP L + L + + + G HRG E A R+
Sbjct: 150 WGPATGGMEPPLHVALAMQEGRIRAAETVTGYAHRGMELRWRNSRVEDACKLSARVASGQ 209
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWG 132
+ + A+ LAVE ++ +L+RV E+ RI HL + A GA
Sbjct: 210 SVAHQVAFCLAVEDACKEQVGPEIRLLRVALLELERICHHLFLLADMARLAGARLVASGC 269
Query: 133 FEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLT 192
REKL+ +GSR+ PGG+ ++ + G C+ + L
Sbjct: 270 MGLREKLIQEAAPITGSRLLMDVCVPGGLSLRHATQMGDMCGRLCEVAERDYPALLALWQ 329
Query: 193 GNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKH 252
+ IG V + G G R +G D R+ P Y + +
Sbjct: 330 EYPGLSMQLAGIGKVTADLLERVGLDGPTARAAGWDCDGRRMMP--GYEGIWRFTSGRQD 387
Query: 253 GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLI 312
G DR ++ + E+ ES++ M + S I
Sbjct: 388 GTAEDRAMLLLEEVGESLR--------------------------------MLDEVASRI 415
Query: 313 HHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLC 372
+ + E VE P G ++ + + R P A L E +
Sbjct: 416 GLTAGGSVQLSMQDSEGTGMVEGPWGGILYWVRLKE-GRVEQVFARNPSSAALLTFEAIL 474
Query: 373 KGHQLADVSAILGSLDI 389
GHQ DV+ + SLDI
Sbjct: 475 PGHQPDDVALLARSLDI 491
>gi|147919664|ref|YP_686592.1| coenzyme F420-reducing hydrogenase, alpha subunit [uncultured
methanogenic archaeon RC-I]
gi|110621988|emb|CAJ37266.1| coenzyme F420-reducing hydrogenase, alpha subunit [uncultured
methanogenic archaeon RC-I]
Length = 410
Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats.
Identities = 62/383 (16%), Positives = 122/383 (31%), Gaps = 18/383 (4%)
Query: 21 HGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G + +LE+D E IV + +L RG EK + + A R + P A
Sbjct: 14 EGHGKFVLEVDDEGIVTKGHFLSLVLVRGFEKFLVGRAMEFAPVATSRFCGLCPPTHATA 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVT-----TQAMDVGALTPPLWGFE 134
A A+E +G+ P +G L+R L + + H L + +
Sbjct: 74 SAEAIEDSIGVTPPRQGLLLRELCNLGNHLHDHPLQQILILPDFVPDAEMQKDAIIRIQK 133
Query: 135 EREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGN 194
R+ E G +H+ + R GG+ ++I + + S + + G
Sbjct: 134 MRKIGQQICEVTGGEAIHSPHIRIGGMAKNISEAARRKLLEKVREYRSIWEEQRQFMEGA 193
Query: 195 RIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGD 254
+ +G + G D+ + + Y YSE+ G+
Sbjct: 194 FDAARVPEGLGAHDMPLMATDLIYG--------RSDVFRREYYPDYSEVLPVPYYGEDIG 245
Query: 255 CYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP--PKRADMKRSMESLI 312
++ M++ R + + G N G ++ + +++ + + +E L
Sbjct: 246 VEACTIIPMIKGGPVEVGPRARLWKFRGYNAKGTMALNRARLIEITIRLDRAEEILEKLD 305
Query: 313 HHFKLYTEGYHVPVGE-VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFL 371
+ + G EAP+G + K + A+
Sbjct: 306 TRARTINQPVTKGSGRLGIGVNEAPRGTNVHMAKV-EDGRISFYKAMPATMWSIPAIGKA 364
Query: 372 CKGHQLADVSAILGSLDIVFGEV 394
+G ++ S D
Sbjct: 365 TEGFHHRWAQWVMRSYDPCISCA 387
>gi|84490090|ref|YP_448322.1| FrhA [Methanosphaera stadtmanae DSM 3091]
gi|84373409|gb|ABC57679.1| FrhA [Methanosphaera stadtmanae DSM 3091]
Length = 406
Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats.
Identities = 59/384 (15%), Positives = 108/384 (28%), Gaps = 22/384 (5%)
Query: 21 HGVLRLILELD-GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L +E+D IV RG EK++ K A R+ V P+ A
Sbjct: 14 EGHAELSMEVDENGIVTTGRYFSITPVRGIEKMVIGKRPETAPVLVQRICGVCPVTHTLA 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFE----E 135
A++ L IE+P G+++R + I SH ++ A D +
Sbjct: 74 SVEAIDDSLKIEVPQAGRILREMCLNAHMINSHAIHHFLVAPDFVPDNQYKEVVKNISTI 133
Query: 136 REKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNR 195
R+ + G +H + R GG+ +I I L + + + G
Sbjct: 134 RKNAQYVEDTVGGEGIHPSDIRIGGMAHNITKNTKNKIKTRISGMMKLLEEHVETMAGLI 193
Query: 196 IFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDC 255
K +G G S ++ + P Y D
Sbjct: 194 EDKDFPDKLGAHNQPVFASDNTYGSKNNLS--INEIEEILPSSWYDLPDIGERACSQIPL 251
Query: 256 YDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP--KRADMKRSMESLIH 313
Y +V R ++ +VG + + + ++ L
Sbjct: 252 YKGNVVETG--------PRARASKFRKFKEVGVKAQHLARAQEMINSAEKILELVDKLDT 303
Query: 314 HFKLYTEGYHVPVGE---VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
++ + G +E P+G P ++ M
Sbjct: 304 SAQVMADYTL--EGTNRLGVGVIEGPRGTNIHSAKISPEGYISYYNAIVPTTWNIPTMGL 361
Query: 371 LCKGHQLADVSAILGSLDIVFGEV 394
+G ++ + D
Sbjct: 362 ATEGFHHEYAPHVIRAYDPCLSCA 385
>gi|120405067|ref|YP_954896.1| nickel-dependent hydrogenase, large subunit [Mycobacterium
vanbaalenii PYR-1]
gi|119957885|gb|ABM14890.1| NAD(P)-dependent nickel-iron dehydrogenase catalytic subunit
[Mycobacterium vanbaalenii PYR-1]
Length = 489
Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats.
Identities = 58/452 (12%), Positives = 121/452 (26%), Gaps = 79/452 (17%)
Query: 20 AHGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD + V H+ + RG EK ++ + +A R+ + ++
Sbjct: 13 IEGHGKVTVHLDDDGNVVDARLHV-VEFRGFEKFVQGHPYWEAPMLMQRICGICFVSHHL 71
Query: 79 AYALAVEKLLG------IEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA------- 125
A ++ ++G + + + IR L + SH +
Sbjct: 72 CGAKVLDDMIGAGTAAEVRVTRTAEKIRRLGHYAQMLQSHATAYFYLVVPEMMFGMDAAP 131
Query: 126 ------------LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDI 173
R+ + G RMH PGGV +++ + +
Sbjct: 132 EQRNLLGLIEANPELMRRVIMLRKWGQEVIKTVFGRRMHGINSVPGGVDKNLSRAECDRL 191
Query: 174 GC------WCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWG--------WGFSG 219
D D L +R V+ + G
Sbjct: 192 LDGEEGLASFDDVMDYAQDGLRLFYDFHEKHRRQVDGFAKVPALNMCLVDADGNVDYYHG 251
Query: 220 VMIRGSGAAWDLRKSQPYEC------------YSELDFDIPIGKHGDCYDRYLVRMMEMR 267
+ +R+ ++ Y + F +G+ + M +
Sbjct: 252 ALRIVDENKCIVREFDYHDYLDHFSEAVEPWSYMKFPFLKDLGREEGSVRVGPLARMNVT 311
Query: 268 ESV--KIIRQCVNRLLGKNKVGPVS------ASDPKIVPPKRADMKRSMESLIHHFKL-- 317
S+ + ++ + R P + + V + + H
Sbjct: 312 NSLSTPLAQEALERFHAYTGGSPNNMTLHTNWARAIEVLHAAELIGELLRDPELHGDDLV 371
Query: 318 YTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME-------- 369
T G VGE VEAP+G + + G + + Q +
Sbjct: 372 VTPGGDAWVGEGIGVVEAPRGTLLHHYRAGVGGDITFANLIVATTHNNQVLNRTVRSVAE 431
Query: 370 -------FLCKGHQLADVSAILGSLDIVFGEV 394
+ +G A + + + D
Sbjct: 432 DYLVGHGEITEGMMNA-IEVGIRAFDPCLSCA 462
>gi|289549182|ref|YP_003474170.1| nickel-dependent hydrogenase large subunit [Thermocrinis albus DSM
14484]
gi|289182799|gb|ADC90043.1| nickel-dependent hydrogenase large subunit [Thermocrinis albus DSM
14484]
Length = 437
Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats.
Identities = 63/428 (14%), Positives = 122/428 (28%), Gaps = 56/428 (13%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +LILE + I RG E+++ + + A+ R+ + A
Sbjct: 11 VEGTAQLILEWKEGRITDAKISIPSA-RGIERVLIGRPIMDALVINPRVCGICGHAHLMA 69
Query: 80 YALAVEKLL-GIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP--------PL 130
A+E ++ +++P + QL+R + + + +H+ + + P
Sbjct: 70 TVRAIEAIIPKLKVPEKAQLLRDITLSLEILQNHIKWFYLFVLPDFTVFFPQLSPQLEPF 129
Query: 131 WGFEEREK------LMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
G R + SG H +Y PGG+ + + S
Sbjct: 130 KGSRWRSAVTQASLIGRGIALLSGQYPHNSYAVPGGITSCPGEGDIVQVLQVLRSTKDFF 189
Query: 185 NDISDLLTGNRIFKQRNVNIG-TVKLEDAWGWGFSGVMIRGS-----GAAWDLRKSQPYE 238
+ K R ++ + G + S G + + P
Sbjct: 190 LRNVVGMEEEDFLKIRQSGDWEMLRGDVGMFIQLCGDLGMMSTGVSYGTFFTGGEIFPCI 249
Query: 239 CYSELDFDIPIGK-----------HGDCYDRYLVRMMEMRESVKIIRQCVN-----RLLG 282
+ Y+ E+ + RQ +N + +
Sbjct: 250 KPGHHTGKKKVCFVNLSKITVRSSFPYSSASYVRYNGTPYETGPLARQLINSNPFVKRMY 309
Query: 283 KNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP------VGEVYAAVEAP 336
+ G V + + L ++ E VP GE + VEA
Sbjct: 310 QKYGGSYLVRVLARVLEIWEIITILEQKLKRLLEVSHERSCVPQETAHLSGEGWGVVEAA 369
Query: 337 KGEFGVYLISDGGNKPYRCKIRAPGYAHLQA--------MEFLCKG--HQLADVSAILGS 386
+G L++D +I P +L E G + + +L S
Sbjct: 370 RGTLIHRLVAD-RGTIVGYQIITPSQWNLGPRCDRFLGVAERALLGLDNPVK-AEMVLRS 427
Query: 387 LDIVFGEV 394
D+
Sbjct: 428 FDVCSVCT 435
>gi|242399498|ref|YP_002994923.1| NiFe hydrogenase II, catalytic subunit alpha [Thermococcus
sibiricus MM 739]
gi|242265892|gb|ACS90574.1| NiFe hydrogenase II, catalytic subunit alpha [Thermococcus
sibiricus MM 739]
Length = 416
Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats.
Identities = 63/402 (15%), Positives = 114/402 (28%), Gaps = 32/402 (7%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G + ++ V+ V I R E L + + R+ + ++ A
Sbjct: 12 VEGNGGAEILIENGEVKDVKVKIFEGPRFFELLTLGRHYWDVPDLEARICAICYLSHSVA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV------------GALT 127
L +E+ LG+ +P L+R L I SH L++
Sbjct: 72 SVLGIERALGVNVPEEITLLRELGLLGELIESHALHLYLLVAPDLFGYADAIRMASKHGE 131
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
G + E G +H +PGG + E +E I C++ +
Sbjct: 132 VVKEGITIKAFGNYIRELLGGREIHGINIKPGGFGRYPTIEELEQIESQCEALLRPARRV 191
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
++ + + + K+ PY + +
Sbjct: 192 VNIFAEQEPLGATVQHYIATNEYLYGDKLIAEDGEKFDYLEHIEEKTLPYSFAKQSRYKG 251
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
I G L M + + +L G VS ++ ++++
Sbjct: 252 NIFMVGALPRVMLKHDMLTPMAKHFYEEHKEKLA----SGYVSFNNLAQAIELLYALEKA 307
Query: 308 MESLIHHFKLYTEGYHVP----VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
E EG +VP GE VEAP+G + D I P
Sbjct: 308 KEVAKTLLDKGIEGENVPIEPQEGEGIGYVEAPRGVLVHHYRIDEKGNIAYSNIITPTAF 367
Query: 364 H-----LQAMEFLCKGHQLAD-------VSAILGSLDIVFGE 393
+ L E K + +D + + + D
Sbjct: 368 NHGIMELSLYEEARKRYGSSDETTFLQKLEETVRAFDPCISC 409
>gi|320353846|ref|YP_004195185.1| F420-non-reducing hydrogenase subunit A [Desulfobulbus propionicus
DSM 2032]
gi|320122348|gb|ADW17894.1| F420-non-reducing hydrogenase subunit A [Desulfobulbus propionicus
DSM 2032]
Length = 449
Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats.
Identities = 59/444 (13%), Positives = 112/444 (25%), Gaps = 71/444 (15%)
Query: 16 QHPAA--HGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
HP G R+ + LD V I L RG E+ + + + R+ +
Sbjct: 7 IHPVTRIEGHARVDIHLDEVGRVRDARVAIAAL-RGFEQFVIGRPAEEIPRIVSRICGIC 65
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP-LW 131
P A AV+ +P G L+R L + I +L+ A L P +
Sbjct: 66 PWMHHLAAVKAVDGCFAASVPPAGHLLRELCQILAHIHDKILHFFFLAAPDFVLGPGGDY 125
Query: 132 GFE------------------EREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDI 173
R+ R +G +H GG + + E +
Sbjct: 126 AVRNIMGLVKQEPELAARVVCMRQLATAMLARFAGKDIHPVAGVVGGFSKPMRKEEQAAM 185
Query: 174 GCWCDSFPSALNDISDLLTG--NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDL 231
+ D F++ ++GT+ G + G +
Sbjct: 186 RADGQHLLDFASFALDFAKTRVFARFQEELQSLGTITTGFLGTVDDQGSLRLYDGNLRLM 245
Query: 232 RKSQPYECYSELDFDIPIGKHGDCY-------------------------------DRYL 260
R + D++ + +H + + R
Sbjct: 246 RADGRSVDFPVSDYERFLAEHVESWSSAKMVYAKCWGEGFRLDPKAPQGIYRVNTLARLN 305
Query: 261 VRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP--PKRADMKRSMESLIHHFKLY 318
V + + G+ G + +++ +
Sbjct: 306 VCDQIATPRAQAELEAFRERFGRPAQGTLLYHWARLIELVHACERALELLADDRITAPQA 365
Query: 319 TEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGH--- 375
G VEAP+G +D R + ++ M
Sbjct: 366 RLPAQPAAGRGIGHVEAPRGTLIHDYTTDDNGCITRANLIVGTTHNIAPMNLSVHQAAAR 425
Query: 376 QLAD----------VSAILGSLDI 389
+AD + + + D
Sbjct: 426 LIADGEVDEEILNRIEMAIRAYDP 449
>gi|150401469|ref|YP_001325235.1| nickel-dependent hydrogenase large subunit [Methanococcus aeolicus
Nankai-3]
gi|150014172|gb|ABR56623.1| nickel-dependent hydrogenase large subunit [Methanococcus aeolicus
Nankai-3]
Length = 385
Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats.
Identities = 62/379 (16%), Positives = 109/379 (28%), Gaps = 17/379 (4%)
Query: 21 HGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +LILE++ E V + RG E +++ K A R+ + A
Sbjct: 14 EGHAKLILEVNDEGSVSKAYYPNTTPVRGFETMLKGKPASFAPIAVMRICGICQTTHGIA 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL-------TPPLWG 132
AVE +G EIP G+L+R L R+ SH L+ A D +
Sbjct: 74 SCEAVEDAIGCEIPEDGKLLRELVGLGNRMHSHPLHHLLTADDFIKPEETELKTSAITLI 133
Query: 133 FEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLT 192
R+ + + G +H GG+ +I + C + ++ D+ T
Sbjct: 134 QRMRKVGQLIVDVVGGEGIHPPNIVIGGMRTNISERAKSKLYYACKQYEKDAYEMYDVYT 193
Query: 193 GNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKH 252
+ I + D +W+ P + Y +
Sbjct: 194 MLIERYLEEIGIPDLGAHDFPYLATHTTYGDKDAISWNDVTEIPAQRYYKNKEVAQT--- 250
Query: 253 GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLI 312
+ + E R + G V + R+++ L
Sbjct: 251 --STSQIPLYGGVPVEGGPRARMV--KFGDLKAGGGVMDINIARAMENLGAAYRALDILD 306
Query: 313 HHFKLYTEGYHV--PVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
+ G EAP+ K I A + +E
Sbjct: 307 QLNINGSTKVVPEYKDGSGIGVHEAPRATNTHMAEVGKDGKIKNYNIIAASTWNFPVVEK 366
Query: 371 LCKGHQLADVSAILGSLDI 389
+ + I+ + DI
Sbjct: 367 AIEKYPHEYAEVIMRAYDI 385
>gi|254502487|ref|ZP_05114638.1| Nickel-dependent hydrogenase superfamily [Labrenzia alexandrii
DFL-11]
gi|222438558|gb|EEE45237.1| Nickel-dependent hydrogenase superfamily [Labrenzia alexandrii
DFL-11]
Length = 480
Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats.
Identities = 68/444 (15%), Positives = 132/444 (29%), Gaps = 75/444 (16%)
Query: 20 AHGVLRLILELDGEI-VERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + L+ E V+ HI + RG E+ I + + RL + P++
Sbjct: 15 VEGHGKVTIHLNSENEVDEARLHI-VEFRGFERFIRGRLMWEVPVIVQRLCGICPVSHHL 73
Query: 79 AYALAVEKLLGIE-IPIRGQLIRVLYSEIGRILSHLLNVTTQAMD---VGALTPP----- 129
A A A++ + G++ + + +R L + SH+L+ A G P
Sbjct: 74 AAAKAMDMIAGVDQLTPTAEKMRRLMHYGQVMQSHVLHFFHLAAPDLLFGFGAPAEKRNI 133
Query: 130 -----------LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
R+ E +G ++H PGG+++++P E + D
Sbjct: 134 FEVIKEQPELGKRAVLMRKYGQEIIEATAGKKIHGTGAVPGGINRNLPIERRDHFLSSID 193
Query: 179 SFPSALNDISDLLTGNRIFKQRNV---------NIGTVKLEDAWGWGFSGVMIRGSGAAW 229
+ D L + + V + V+ ED + G + S
Sbjct: 194 EMLAWAQDAVKLARDYTLEHEDLVAEFGSFPSNYMSLVREEDGALDLYHGNLRALSSTGN 253
Query: 230 DLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL-------- 281
+ PY Y E + Y ++ E + R+
Sbjct: 254 VIFDQLPYPQYHERLIEDVRSW---SYMKFPFIKELGPEVGWYRVGPLARMNTASFIDTP 310
Query: 282 --------------GKNKVGPVSASDPKIVP--PKRADMKRSMESLI-HHFKLYTEGYHV 324
G ++ +++ ++ + L G
Sbjct: 311 IADAAHKELKAVTDGHPNNSTLANHWARMIEVVHCVEKIRELLNDPDLQGNDLVMTGERR 370
Query: 325 PVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK--------GH- 375
GE +EAP+G + D ++ C + + + M K GH
Sbjct: 371 --GEGIGVIEAPRGNLIHHYQVDENDQVTYCNLIVSTTHNNEGMNRAVKDVAVKHLSGHD 428
Query: 376 -----QLADVSAILGSLDIVFGEV 394
L V + + D
Sbjct: 429 QITEGMLNHVEVAIRAYDPCLSCA 452
>gi|189425847|ref|YP_001953024.1| nickel-dependent hydrogenase large subunit [Geobacter lovleyi SZ]
gi|189422106|gb|ACD96504.1| nickel-dependent hydrogenase large subunit [Geobacter lovleyi SZ]
Length = 482
Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats.
Identities = 52/439 (11%), Positives = 105/439 (23%), Gaps = 66/439 (15%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ ++L+ V H+ RG EK +++ + +R+ + P++
Sbjct: 13 IEGHAKITIQLNDAGEVADARFHV-TEFRGFEKFCLGRSYREMPSITERICGICPVSHAL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV--------------- 123
A A A + L G+ IP + +R L + SH L+ +
Sbjct: 72 ASAKAGDMLKGVNIPPTAEKLRRLMHYAQLVQSHALSFFLLSGPDLLLGMESDPAKRNLM 131
Query: 124 ----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ +H A+ GGV + + + + I
Sbjct: 132 GLIEAQPDLARQGIRLRQFGQEVIRLLGDRAVHPAWAVSGGVREPLTADKRDWIAARLPE 191
Query: 180 FPSALNDISDL-LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSG------------ 226
+ L + + G+ G + + G
Sbjct: 192 ALATAKKALALGYDALQRLSEEADCYGSFPSLFLGLVSPDGGLEQYDGKLRLIDADGRNL 251
Query: 227 -----------------AAWDLRKSQPYEC--YSELDFDIPIGKHGDCYDRYLVRMMEMR 267
+W K Y+ + +G
Sbjct: 252 EGDLDPSRYAEFIGEAEQSWSYLKFPYYKPRGHEGEAGMYRVGPLARLNLADYAGTPLAE 311
Query: 268 ESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVG 327
+ ++ RQ + + + +
Sbjct: 312 QELRRFRQFREGGGPVLGSFYYHQARLIELLYCLERIGELLNDPHLLDSHVRSHARTNNR 371
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH--------LQAMEFLCKGHQLAD 379
VEAP+G D + + LQ + G +L +
Sbjct: 372 IGIGVVEAPRGVLFHEYHVDDDGLLSYINLIIATGQNNLAMNRTVLQIAKKYLSGSRLDE 431
Query: 380 -----VSAILGSLDIVFGE 393
V + D
Sbjct: 432 GLLNRVEHGIRCYDPCLSC 450
>gi|225848571|ref|YP_002728734.1| Ni,Fe-hydrogenase large subunit [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225643228|gb|ACN98278.1| Ni,Fe-hydrogenase large subunit [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 450
Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats.
Identities = 62/430 (14%), Positives = 122/430 (28%), Gaps = 74/430 (17%)
Query: 32 GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLL--- 88
+ + +RG E++++ K L A+ R+ + A A+E L
Sbjct: 24 NGKISDA-YVVAYNYRGFERILQGKDLLDALVINPRICGICGHAHLMATVNAIENLYKNS 82
Query: 89 --GIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG---------------ALTPPLW 131
IEI + +LI+ + + +HL +
Sbjct: 83 SIDIEITEKAKLIKQITLCSEIVQNHLKWFYLFVIPDFLNFFPSLETEKFKPFVGEKWKK 142
Query: 132 GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND----- 186
+ +++ G H +Y PGG+ + + D D + +
Sbjct: 143 ALKFSSEIVKVIAIFGGQWPHTSYAIPGGITSEPLKTDIVDALSIVDRLIKYVEEEIFGM 202
Query: 187 -ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQP--YECYSE- 242
D L + + + + G +G + G +++ + Y C +E
Sbjct: 203 SYEDYLNVKDLEEFLSKSKGGDLTTFIDFCVKTG--LDKEGQSYEHFITVSTVYPCINEG 260
Query: 243 -----------------LDFDI-PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKN 284
DF+I + G Y + ++ + R+ +
Sbjct: 261 VIKKKKCKLNLKKIKEVKDFNILYNKETGYTYANGVRYDGLPMQTGPLARRLTSETELFL 320
Query: 285 KVGPVSASDPKIVPPKRAD--------MKRSMESLIHHFKLYTEGYHVPV--GEVYAAVE 334
+ + + R D MK + + + K Y + GE + VE
Sbjct: 321 NLYRLYKDSYLVRVWARVDEILRILINMKDWLLKINVNEKSYIKPKDYKKLYGEAFGYVE 380
Query: 335 APKGEFGVYLISDGGNKPYRCKIRAPGYAHL--------QAMEFLCKGHQLAD---VSAI 383
A +G + I P +L E G L D +
Sbjct: 381 ASRGSLIHKVKV-EKGVIKSYNIITPTMWNLGSRCNKFKSPAEKAVLG--LEDPLKAQMV 437
Query: 384 LGSLDIVFGE 393
L S D+
Sbjct: 438 LRSFDVCSVC 447
>gi|254381621|ref|ZP_04996985.1| nickel-dependent hydrogenase [Streptomyces sp. Mg1]
gi|194340530|gb|EDX21496.1| nickel-dependent hydrogenase [Streptomyces sp. Mg1]
Length = 454
Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats.
Identities = 59/417 (14%), Positives = 114/417 (27%), Gaps = 49/417 (11%)
Query: 26 LILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVE 85
L L + V I R E + + + R+ + P+ + + A+E
Sbjct: 25 LHLRIHHGTVIEARLKIYEPPRFFEAFLRGRAHTEPPDLTSRICGICPVAYQMSACRAIE 84
Query: 86 KLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG------------ALTPPLWGF 133
G+ + + +R L I S L++ L G
Sbjct: 85 DACGVVVDGQAAALRRLLYCGEWIESQTLHIHMLHAPDFLGEADVIGLSRSHLGHVKRGL 144
Query: 134 EEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTG 193
++ E G +H R GG H+ P + + + D + G
Sbjct: 145 RLKQAGNAVVELLGGRAIHPVNVRLGGFHRAPTPAELRPLRERLRTALDDAWDTVRWVAG 204
Query: 194 NRIFKQRNVNIGTVKLEDAWGWGFSGV--MIRGSG----AAWDLRKSQPYECYSELDFDI 247
E+ SGV ++ G ++ LR + ++
Sbjct: 205 FEFPDAECDADLLALAEEGTYAIESGVPTVLPNDGTRPAYSFPLRDFTDHVTEEQVSHST 264
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKI-----IRQCVNRLLGKNKV------GPVSASDPKI 296
+ D + S + + LG G V + +
Sbjct: 265 ALHSRLDGRRHLTGSLARWAVSGHLLSPLALEAAREAGLGDPPSLAGAGRGGVCRNPYRS 324
Query: 297 VPPKRADMKRSMESLIHHFKLYTEGYHV------PVGEVYAAVEAPKGEFGVYLISDGGN 350
+ + ++ ++E + Y G + A EAP+G DG
Sbjct: 325 ILVRAVEVLYAVEEALRIIAEYERPARPYTEVPARAGTGHGATEAPRGLLYHRYALDGRG 384
Query: 351 KPYRCKIRAPGYAHLQAMEFLCK-----------GHQLA---DVSAILGSLDIVFGE 393
+ I AP + A+E + G ++A + + D
Sbjct: 385 RVTDACIIAPTAQNQGAIEEDLRRLVQAGLDRGEGSEVALTRLCERAVRNHDPCISC 441
>gi|222054987|ref|YP_002537349.1| nickel-dependent hydrogenase large subunit [Geobacter sp. FRC-32]
gi|221564276|gb|ACM20248.1| nickel-dependent hydrogenase large subunit [Geobacter sp. FRC-32]
Length = 425
Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats.
Identities = 70/407 (17%), Positives = 120/407 (29%), Gaps = 32/407 (7%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G + + +DG V+RV+ + R E L+ K F + R+ +
Sbjct: 13 VEGHGVVRVFMDGSHVDRVELALVEPPRLFEVLLRGKHFREIPDIICRICSLCSTIHRVT 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA------------LT 127
+AVEK GI + L R L G I SH L++ A+
Sbjct: 73 ALMAVEKAFGIIVSSETYLYRQLIVLGGHIQSHALHLFCLALPDHFNAAGFADLAKLAPD 132
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
G + E G +H + GG+ Q I + + S S
Sbjct: 133 LLKLGLRIKAVGNDIQETIGGRLIHPINVKIGGMGQHIASNDLLRLQQSLKSILSDTIRT 192
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGS-GAA---WDLRKSQPYECYSEL 243
+L + + ++D G M+ S G A D R +
Sbjct: 193 VELFSSFATPGPPLPPPVYLAVKDENAPPLFGDMLTTSTGIAVKGSDYRSALKESVNDHS 252
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+ + L R+ + + ++ K G + ++
Sbjct: 253 NGKFSHFDDTNIAVGALSRLNMNIRLTEAAGKAFDQAKKKLVNGDMWQNNLAQAIELVFA 312
Query: 304 MKRSMESLIH-----HFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
++ +ME + H T+G P GE A EAP+G + I
Sbjct: 313 VESAMEIIDSLLQTGHGHSATDGILSPKGEGTAITEAPRGVLIHSYSFNSRGYCVGADII 372
Query: 359 APGYAHLQAMEFLCK---------GHQLADV--SAILGSLDIVFGEV 394
P + A+E G Q ++ + D
Sbjct: 373 TPTAINQAAIEQDLLFLARATEGAGEQEMKFKLEMLVRAYDPCISCA 419
>gi|304315423|ref|YP_003850570.1| F420-reducing hydrogenase, subunit alpha [Methanothermobacter
marburgensis str. Marburg]
gi|302588882|gb|ADL59257.1| F420-reducing hydrogenase, subunit alpha [Methanothermobacter
marburgensis str. Marburg]
Length = 405
Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats.
Identities = 65/382 (17%), Positives = 120/382 (31%), Gaps = 19/382 (4%)
Query: 21 HGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L++E+D E IV + RG EK++ K A R+ V P+ A
Sbjct: 14 EGHAELVMEVDDEGIVTKGRYFSITPVRGLEKMVTGKAPETAPVMVQRICGVCPIPHTLA 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGF----EE 135
A++ L IE+P G+L+R L + SH ++ A D E
Sbjct: 74 SVEAIDDSLDIEVPKAGRLLRELTLAAHHVNSHAIHHFLIAPDFVPENLMADAINSVSEI 133
Query: 136 REKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNR 195
R+ + +G +H + R GG+ +I + + +N+ +L+ G
Sbjct: 134 RKNAQYVVDMVAGEGIHPSDVRIGGMADNITELARKRLYARLKQLKPKVNEHVELMIGLI 193
Query: 196 IFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDC 255
K +G G + + + P Y + +
Sbjct: 194 EDKGLPEGLGVHNQPTLASHQIYGDRTKFDLDRFT--EIMPESWYDDPEIAKRACSTIPL 251
Query: 256 YDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP--KRADMKRSMESLIH 313
YD V + R + G + G V+ + + + ++ L
Sbjct: 252 YDGRNVEVG--------PRARMVEFQGFKERGVVAQHVARALEMKTALSRAIEILDELDT 303
Query: 314 HFKLYTEGYHVPVGE-VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLC 372
+ + G+ A+EAP+G K P ++ M
Sbjct: 304 SAPVRADFDERGTGKLGIGAIEAPRGLDVHMAKV-ENGKIQFYSALVPTTWNIPTMGPAT 362
Query: 373 KGHQLADVSAILGSLDIVFGEV 394
+G ++ + D
Sbjct: 363 EGFHHEYGPHVIRAYDPCLSCA 384
>gi|317488276|ref|ZP_07946842.1| hypothetical protein HMPREF1023_00540 [Eggerthella sp. 1_3_56FAA]
gi|325830890|ref|ZP_08164274.1| Nickel-dependent hydrogenase [Eggerthella sp. HGA1]
gi|316912616|gb|EFV34159.1| hypothetical protein HMPREF1023_00540 [Eggerthella sp. 1_3_56FAA]
gi|325487297|gb|EGC89740.1| Nickel-dependent hydrogenase [Eggerthella sp. HGA1]
Length = 430
Score = 163 bits (414), Expect = 3e-38, Method: Composition-based stats.
Identities = 53/426 (12%), Positives = 112/426 (26%), Gaps = 57/426 (13%)
Query: 17 HPA-AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMN 75
H A G + + ++ V+ V+ ++ R E ++ + F + R+ + +
Sbjct: 10 HIARVEGHGNVHVVIEDGEVKTVEMNVVEPARLFESMVRGRRFEEIPYISSRICGICSSS 69
Query: 76 QEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG----------- 124
A+E++ G+E+ R + +R L + +H ++ A
Sbjct: 70 HVVTDLKAIERVFGVEVTDRTRALRELLVYGSYLQNHASHLFVFAAPDFLGMPSVFPLAQ 129
Query: 125 -ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
+ + G +H GG +I P ++ D+
Sbjct: 130 TDPELFEQALGLKALGNELCTKVGGRSIHPITAVVGGFTHEIEPAEYLELADKMDAAMDF 189
Query: 184 LNDISDLL--TGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+ DL + V+ + +G +D + Q +
Sbjct: 190 ALEAVDLFRGFEVPDIATAGDMLAMVEDDYYPVECSDQAFFLNAGIVFDANEVQEHIEEH 249
Query: 242 ELDFDIP-------IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDP 294
+ V L + P +
Sbjct: 250 AVPHSAALLARVRETQSPYFTGALARVNASWQNLGQNAKVAAAKAGLRPPEANPFMNNVA 309
Query: 295 KIVPPKRADMKRSMESLIHHFKLYTE--------------GYHVPVGEVYAAVEAPKGEF 340
+ V M++L L + + V G EAP+G
Sbjct: 310 QAV--------EIMDALDRCADLCRKLAEPGAIASSSLPVPFEVKAGRAVGFTEAPRGAL 361
Query: 341 GVYLISDGGNKPYRCKIRAPGYAHLQAMEF---LCKGHQLAD----------VSAILGSL 387
L D + I P ++ +E L +AD + ++ +
Sbjct: 362 FHDLTLDAEGRVTHASILTPTAQNVANLEADMRLLAEKLVADGAAEDVVRLEIEKLVRAY 421
Query: 388 DIVFGE 393
D
Sbjct: 422 DPCLSC 427
>gi|295696640|ref|YP_003589878.1| nickel-dependent hydrogenase large subunit [Bacillus tusciae DSM
2912]
gi|295412242|gb|ADG06734.1| nickel-dependent hydrogenase large subunit [Bacillus tusciae DSM
2912]
Length = 542
Score = 163 bits (414), Expect = 3e-38, Method: Composition-based stats.
Identities = 57/503 (11%), Positives = 126/503 (25%), Gaps = 129/503 (25%)
Query: 19 AAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
+ G L + +E++G V + RG E +++ K + R+ + + +
Sbjct: 22 SVEGDLNVKVEIEGNTVVNA-WTESTMFRGFEIILKGKDPQAGLIVTPRICGICGGSHLY 80
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD---------------- 122
A A++ E+P LIR + + S
Sbjct: 81 KAAYALDTAWHTEVPPNATLIRNIAQAAETLQSIPRWFYALFAPRLTNNNYKSASLYDEV 140
Query: 123 -----VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWC 177
A G K + Y G H+++ PGGV +
Sbjct: 141 VRRWDPFAGEHFEIGVAVSGKPVEIYAIFGGQWPHSSFMVPGGVMCAPTLSDITRSTSIL 200
Query: 178 DSFPSA-------------------LNDISDLLTGNRIFKQRNVNIGT-VKLEDAWGWGF 217
+ + +D+ L ++ + +E
Sbjct: 201 EYYKENWLEKVLLGCSVERWLENQTWDDVLKWLDEKPEHYNSDLGLFIRYSMEIGLNQYG 260
Query: 218 SGVMIR------------------------------GSGAAWDL------RKSQPYECY- 240
+G G + R+ Y Y
Sbjct: 261 AGPGRYITAGSFFHPEKYTHPVINKRNEGLIFRAGIYDGQNFHDFDQERVREDHTYSFYR 320
Query: 241 ------------SELDFDIPIGKHGDCYDRYLVRMMEMR----ESVKIIRQCVNRLLGKN 284
+D + + + + + E+ + RQ + G
Sbjct: 321 GSESLHPFDGKTDPIDPEEGQKEGKYTWAKAPRYQLHDEEISLEAGPLARQVMAGRPGAE 380
Query: 285 ----------------KVGPVSASDPKIVPPKR--ADMKRSMESLIHHFKLYTEGYHVPV 326
+ ++ + ++K+ + + + K Y + +P
Sbjct: 381 DWQDSSPLFLNIIQSIGPSVMVRVLARLHEAAKYYLNVKKWLGQIDLNEKFYVKPRELPE 440
Query: 327 GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQL 377
G + A EA +G ++ K ++ P ++ +E G L
Sbjct: 441 GRGFGATEAARGALADWIEIK-DGKIENYQVITPTAWNIGPRDRHGNRGPIETAMIGATL 499
Query: 378 AD------VSAILGSLDIVFGEV 394
+ ++ + S D
Sbjct: 500 KNPNDPVELAHVAQSYDSCLVCT 522
>gi|257791009|ref|YP_003181615.1| nickel-dependent hydrogenase large subunit [Eggerthella lenta DSM
2243]
gi|257474906|gb|ACV55226.1| nickel-dependent hydrogenase large subunit [Eggerthella lenta DSM
2243]
Length = 430
Score = 163 bits (414), Expect = 3e-38, Method: Composition-based stats.
Identities = 53/418 (12%), Positives = 112/418 (26%), Gaps = 41/418 (9%)
Query: 17 HPA-AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMN 75
H A G + + ++ V+ V+ ++ R E ++ + F + R+ + +
Sbjct: 10 HIARVEGHGNVHVVIEDGEVKTVEMNVVEPARLFESMVRGRRFEEIPYISSRICGICSSS 69
Query: 76 QEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG----------- 124
A+E++ G+E+ R + +R L + +H ++ A
Sbjct: 70 HVVTDLKAIERVFGVEVTDRTRALRELLVYGSYLQNHASHLFVFAAPDFLGMPSVFPLAQ 129
Query: 125 -ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
+ + G +H GG +I P ++ D+
Sbjct: 130 TDPELFEQALGLKALGNELCTKVGGRSIHPITAVVGGFTHEIEPAEYLELADKMDAAMDF 189
Query: 184 LNDISDLL--TGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+ DL + V+ + +G +D + Q +
Sbjct: 190 ALEAVDLFRGFEVPDIATAGDMLAMVEDDYYPVECSDQAFFLNAGIVFDANEVQEHIEEH 249
Query: 242 ELDFDIP-------IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDP 294
+ V L + P +
Sbjct: 250 AVPHSAALLARVRETQSPYFTGALARVNASWQNLGQNAKVAAAKAGLRPPEANPFMNNVA 309
Query: 295 KIVPP-----KRADMKRSMESLIHHFKLYTE-GYHVPVGEVYAAVEAPKGEFGVYLISDG 348
+ V + AD+ R + + V G EAP+G L D
Sbjct: 310 QAVEIVDALDRCADLCRKLAEPGAIASSSLPVPFEVKAGRAVGFTEAPRGALFHDLTLDA 369
Query: 349 GNKPYRCKIRAPGYAHLQAMEF---LCKGHQLAD----------VSAILGSLDIVFGE 393
+ I P ++ +E L +AD + ++ + D
Sbjct: 370 EGRVTHASILTPTAQNVANLEADMRLLAEKLVADGAAEDVVRLEIEKLVRAYDPCLSC 427
>gi|116749226|ref|YP_845913.1| hydrogen dehydrogenase [Syntrophobacter fumaroxidans MPOB]
gi|116698290|gb|ABK17478.1| Hydrogen dehydrogenase [Syntrophobacter fumaroxidans MPOB]
Length = 449
Score = 163 bits (414), Expect = 3e-38, Method: Composition-based stats.
Identities = 61/448 (13%), Positives = 109/448 (24%), Gaps = 70/448 (15%)
Query: 10 TINFGPQHPAAHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
IN P G + ++LD V H L RG EK IE K + +R+
Sbjct: 4 VINIAPIT-RIEGHASIAIKLDAKGNVADSKVHYQSL-RGFEKFIEGKPAEEVPRIVNRI 61
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG---- 124
+ P + A AV+ G+ + G+ +R L I +LN A
Sbjct: 62 CGICPWHHHTASNKAVDLCFGVTVTPAGRKLRELMQIISHGEDKILNFFFLAAPDFVMGP 121
Query: 125 ---------------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL 169
A + R K + E+ SG +H GG + +
Sbjct: 122 DADYGVRNVIGVAKAAPELATKAVQMRYKAKMILEKFSGKAIHPHAAVAGGFCKPLLEAE 181
Query: 170 VEDIGCWCDSFPSALNDISDLLTG--NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSG- 226
++ + +G + G + G
Sbjct: 182 RQEFLPQIRELLDFSLFTLGFAKAEVFPKYLDAVKVLGVINTGFIGTVDEQGALNVFGGN 241
Query: 227 ----------AAWDLRKSQPYECYSELDFDIPIGKHGDCY----------------DRYL 260
+D + Y + F + C+ L
Sbjct: 242 LRIMKPDGTFVEFDPQNYTDYIGEAVTPFSYGKYPYAKCWNEGFSLDIDNPKGIYRANCL 301
Query: 261 VRMMEMRESVKIIRQC----VNRLLGKNKVGPVSASDPKIVP--PKRADMKRSMESLIHH 314
R+ + Q G+ + +++ +E
Sbjct: 302 ARINVADKMATPRAQAELEEFRAAFGRPAQLTLLYHWARLIEDVYAYERAIELLEDPEIT 361
Query: 315 FKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK- 373
G VEAP+G +D R + +L +
Sbjct: 362 DTNVRAKVEPKAGRGVGCVEAPRGTLIHDYSTDDKGLITRANLIVGTTHNLGPIHMSVHQ 421
Query: 374 --GHQLAD----------VSAILGSLDI 389
+ D + + + D
Sbjct: 422 AARALIKDGEVNEGILNKIEMAVRAYDP 449
>gi|282165162|ref|YP_003357547.1| F420-non-reducing hydrogenase subunit A [Methanocella paludicola
SANAE]
gi|282157476|dbj|BAI62564.1| F420-non-reducing hydrogenase subunit A [Methanocella paludicola
SANAE]
Length = 469
Score = 163 bits (414), Expect = 4e-38, Method: Composition-based stats.
Identities = 68/440 (15%), Positives = 133/440 (30%), Gaps = 64/440 (14%)
Query: 16 QHP--AAHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
HP G + + LD V H L RG EK +E +A R+ +
Sbjct: 6 IHPLSRIEGHASVTINLDDKGEVADAHFHATEL-RGFEKFLEGAAVEEAPRITPRICGIC 64
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------- 124
P A A AV+++ G ++P +R L I SH L++ A+
Sbjct: 65 PTVHHLASAKAVDEIFGAQVPETALKLRRLLDMGQFIHSHALHLFLLALPDYILGPDYNP 124
Query: 125 -----------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDI 173
E R+ E G +H PGG+ + E ++
Sbjct: 125 ALRNVVGLVQANPELAKMAIEGRKIGQRITEETGGKPIHPVSAVPGGMSFALANEKRAEL 184
Query: 174 GCWCDS-----------FPSALNDISDLLTGNRIFKQRNVNIGTV------KLEDAWGWG 216
++ +DL+ N + ++ +G +
Sbjct: 185 EAMAKRSVEIARISWPVVMKMMDKYADLV--NSVGLVQSDFVGLTRNGKLEFYDGNVRAI 242
Query: 217 FSGVMIRGS--GAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEM-----RES 269
SG + G + + E YS + F +G L R+ + E+
Sbjct: 243 DSGGVQLADFPGKDYLSYIEETAEPYSYMKFTKLKKGNGFYRVGPLARVNIVDSIGTPEA 302
Query: 270 VKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM--ESLIHHFKLYTEGYHVPVG 327
K++ + + + + + I ++ S+ +S I + T V
Sbjct: 303 DKMLAEFRAKYGRVPQQSLLYHAARTIEYMAASETALSLLQDSAITDKNVRTAVTGVKNT 362
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME--------FLCKGHQLAD 379
VEA +G + + + + +A++ L G +++
Sbjct: 363 RGIGVVEATRGTLIHDYTVNDKGFITKANLIVATGHNNRAIDRAVLQSSQKLIHGDNVSE 422
Query: 380 -----VSAILGSLDIVFGEV 394
+ ++ + D
Sbjct: 423 GTLNRIEMVVRAYDPCVSCA 442
>gi|325294648|ref|YP_004281162.1| Coenzyme F420 hydrogenase [Desulfurobacterium thermolithotrophum
DSM 11699]
gi|325065096|gb|ADY73103.1| Coenzyme F420 hydrogenase [Desulfurobacterium thermolithotrophum
DSM 11699]
Length = 390
Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats.
Identities = 61/384 (15%), Positives = 124/384 (32%), Gaps = 13/384 (3%)
Query: 18 PAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQE 77
P G L L++ IV++ + + RG E L+ K + A R+ + +
Sbjct: 11 PLTEGHSGLYLDVVNGIVKKGYYYALVPIRGFETLLLDKEAVIAPVITSRVCGLCQITHS 70
Query: 78 HAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGF---- 133
A A AVE GI++P+ +L+R + RI ++LL+ + D+ + F
Sbjct: 71 IASARAVESAAGIDVPLEAELLREVLGLAVRIYNNLLHQIVISEDIFPKREERFAFIRKV 130
Query: 134 -EEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLT 192
R+ E G +HA + GG+ + + + E I C L + +
Sbjct: 131 QRIRKFTGEVLESIGGEIIHAPNIKVGGISEPLEDFVREKILASCQEVKPLLKQVFEEFK 190
Query: 193 GNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKH 252
N + N+ + + + S + P E +
Sbjct: 191 ENIDKFWQKENLEEDFGKHDLPFFATDKFYGKSIDKSKIEFKYPQELFHTSLKREITNIF 250
Query: 253 GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLI 312
+ + R+ + + V + ++ + S
Sbjct: 251 PYVDGKIVETGPRARKVL------FDNYKPIGGVKELHILRALESVEAIERIEEILSSRS 304
Query: 313 HHFKLYTEGYHVPVGE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
+++ + GE EAP+G + D + KI P + +
Sbjct: 305 FEVEMWNRTFPTSDGEIPGVGVHEAPRGTNIHIVKLDKRGRIVYYKIIVPTEFNFMVISK 364
Query: 371 LCKGHQLADVSAILGSLDIVFGEV 394
+G ++ V ++ + D
Sbjct: 365 ALEGIPVSKVEIVVRAYDPCTVCA 388
>gi|317050635|ref|YP_004111751.1| nickel-dependent hydrogenase large subunit [Desulfurispirillum
indicum S5]
gi|316945719|gb|ADU65195.1| nickel-dependent hydrogenase large subunit [Desulfurispirillum
indicum S5]
Length = 516
Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats.
Identities = 80/502 (15%), Positives = 130/502 (25%), Gaps = 129/502 (25%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ ++G V+ G + RG EK ++ A R V P A
Sbjct: 13 IEGHLRVETAMEGRRVKSARCS-GDMFRGIEKALKGFDARVAQHITQRTCGVCPYAHAEA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILS---HLL---------------------- 114
ALA+E +GI + GQL+R L + +I H
Sbjct: 72 SALALESAMGIRPNVNGQLLRNLTVGVYQIKDHLLHFYTLCALDFIDITAVLEYRGNDQA 131
Query: 115 ------------------------------NVTTQAMDVGALTPPLWGFEEREKLMVFYE 144
+ +++ + L E +L
Sbjct: 132 LLQVKSWVQHELANNKVFPAAPFLPRYEATYCSDHEVNISGIKGYLDAIEIMAQLHKMVA 191
Query: 145 RASGSRMHAAYF----RPGGVHQDIPPELVEDIGCWCDSFPSAL-NDISDLLTGNRIFKQ 199
H D + D + ND+ + + +
Sbjct: 192 IFGAKAPHPVAIEAGGVTTMPTVDRLAHFGTLLSHCTDFVRNRYGNDVLAVAKAFPAYFK 251
Query: 200 RNVNIGTVKLEDAWGWG-------FSGVMIRGSGAAWDLRK---SQPYECYSE------- 242
G G GV I GS DL K Y Y
Sbjct: 252 EGKGYGNTLSAPYLPDGNGENFFFAGGVTIGGSYRPLDLGKITEDHSYAYYHNGSSPLLR 311
Query: 243 ------------LDFDIPIGKH--GDCYDRYLVRMMEMRESVKIIR-------------- 274
DF++ GK ++R E R
Sbjct: 312 PLQTDTLRPLSARDFEVEQGKVDGKYSWNRAPRYDGHAMEVGPAARVVNTYRSGSNPELT 371
Query: 275 ---QCVNRLLGKNKVGPVSASDPKIVPPKRAD-----MKRSMESLIHHFKLYTEGYHVPV 326
+NR LG S + AD M+R + + +T
Sbjct: 372 AMVNRLNRELGITIDDYPSVMGRHLSRYILADLTLRHMERQLAEVRPDVLGFTHHPVPVN 431
Query: 327 GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQL 377
EA +G ++ +DG ++ P ++ A+E + +G ++
Sbjct: 432 ARGVGITEATRGALAHWIETDGKGVIRNYEMVVPTTWNMSPRDGRGNPGAVEKMLEGTEV 491
Query: 378 ADV------SAILGSLDIVFGE 393
AD + I+ S D G
Sbjct: 492 ADAANPMELARIVRSTDPCIGC 513
>gi|329114353|ref|ZP_08243115.1| NADH-quinone oxidoreductase subunit D 2 [Acetobacter pomorum DM001]
gi|326696429|gb|EGE48108.1| NADH-quinone oxidoreductase subunit D 2 [Acetobacter pomorum DM001]
Length = 498
Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats.
Identities = 80/384 (20%), Positives = 129/384 (33%), Gaps = 35/384 (9%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
+GP L + L L + + G HRG E A R+
Sbjct: 150 WGPATGGMEPPLHVALALQEGRIRATETVTGYAHRGMELRWRNSRVEDACKLSARVAAGQ 209
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWG 132
+ Q+ A+ LAVE ++ +L+RV E+ RI HL + A GA
Sbjct: 210 SVAQQVAFCLAVEDACKEQVGPEIRLLRVALLELERIYHHLFLLADMARLAGARLVASGC 269
Query: 133 FEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLT 192
RE+++ +GSR+ PGG+ ++ + C+ + L
Sbjct: 270 MALRERMIQEAAPITGSRLLMDVCVPGGLSLRHATQMGDMCARLCEVAARDYPALLALWQ 329
Query: 193 GNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKH 252
+ +G V + G G R +G D R+ P Y + +
Sbjct: 330 EYPGLSMQLAGMGKVTADLLERVGLDGPTARAAGWDCDGRRMMP--GYEGIWRFTSGRQD 387
Query: 253 GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLI 312
G DR ++ + E+ ES++ M + S I
Sbjct: 388 GTVEDRAMLLLEEVGESLR--------------------------------MLDEVASRI 415
Query: 313 HHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLC 372
+ + GE VE P G ++ + + R P A L E +
Sbjct: 416 GLTAGGSVQLSMQDGEGTGMVEGPWGGILYWVRLR-DGRVEQVFTRTPSSAALLTFEAIL 474
Query: 373 KGHQLADVSAILGSLDIVFGEVDR 396
GHQ DV+ + SLDI +DR
Sbjct: 475 PGHQPDDVALLARSLDINAAALDR 498
>gi|1706903|sp|Q00390|FRHA_METVO RecName: Full=Coenzyme F420 hydrogenase subunit alpha; AltName:
Full=8-hydroxy-5-deazaflavin-reducing hydrogenase
subunit alpha; Short=FRH
gi|44701|emb|CAA43496.1| F420-reducing hydrogenase subunit [Methanococcus voltae PS]
Length = 398
Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats.
Identities = 68/409 (16%), Positives = 123/409 (30%), Gaps = 40/409 (9%)
Query: 6 SRSFTINFGPQHPAA--HGVLRLILELDGEIVER------VDPHIGLLHRGTEKLIETKT 57
++ IN P G +L+L++D + + V P RG EK + K
Sbjct: 2 GKTVEIN-----PTTRHEGHTKLVLKVDDDGIVEKGNYLSVTPV-----RGFEKFLVGKP 51
Query: 58 FLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVT 117
A R + P+ + A+E GI P G L+R L ++ SH L+
Sbjct: 52 AEFAPIAVSRFCGICPIAHATSAVEAIEDACGIVPPKDGLLLRELTGLGNKMHSHPLHEF 111
Query: 118 ----TQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDI 173
+ + + R+ + G +HA + GG+ + I P V I
Sbjct: 112 LIAPDFIPEKDRVEYITRIQQMRKTGQYIVDTIGGEAIHAPNIKVGGMLKSITPSAVSKI 171
Query: 174 GCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA----AW 229
C F + + L IF+ R + GT E F G + S
Sbjct: 172 YYKCKEFEKLAKEQVEYLI--PIFENRTLVDGTEIPEKLGYHDF-GYLATDSTYGNRENI 228
Query: 230 DLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPV 289
+ +K Y Y + ++ + L + R R + + G +
Sbjct: 229 EQKKVHEYTPYDVYEKEVAVQ------ACQLFQEYNGRLMEVGPRARFAKFHDFKEKGAM 282
Query: 290 SASDPKIVP--PKRADMKRSMESLIHHFKLYTEGYHVPVGE--VYAAVEAPKGEFGVYLI 345
+ + +E L + + GE EA +G
Sbjct: 283 AIHIARAYENVIHVKRAMEIIEELNVDGLTRAKDPILGDGEKLGLGVHEAARGHNTHQAS 342
Query: 346 SDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEV 394
D + ++ + + H ++ + D
Sbjct: 343 IDEKGRITYYNAIVATTWNIPLIGKAVEAHY-KFAEHVVRAYDPCVSCA 390
>gi|78222331|ref|YP_384078.1| nickel-dependent hydrogenase, large subunit [Geobacter
metallireducens GS-15]
gi|78193586|gb|ABB31353.1| NAD(P)-dependent nickel-iron dehydrogenase catalytic subunit
[Geobacter metallireducens GS-15]
Length = 476
Score = 163 bits (413), Expect = 5e-38, Method: Composition-based stats.
Identities = 60/439 (13%), Positives = 112/439 (25%), Gaps = 65/439 (14%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G + + LD V H+ RG E ++ + R+ + P++
Sbjct: 13 IEGHATITIRLDDAGSVADARLHV-TEFRGFEAFCVGRSIWEMPGITARICGICPISHSI 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV--------------- 123
A A A + +LG++IP + +R + + I SH L+
Sbjct: 72 ASARAGDAILGVDIPPAAEQLRRIANLASLIQSHALSFFHLCAADLLLGMDHDPSRRSLW 131
Query: 124 ----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ +G R+H ++ PGGV + + E +
Sbjct: 132 GLLESRPDVARRGIRLRQIGQQIVSNLAGERVHPSWAVPGGVREPLDAERRRKVVELLPE 191
Query: 180 FPSALNDISDLLTGNRIFKQRNVNI-GTVKLEDAWGWGFSGVMIRGSGA----------- 227
+ + +LL V G A G G + G
Sbjct: 192 GIAIIRSAFELLDEIYGRHGAEVGTYGDFPSLFAGLVGEDGGLEHYDGMLRFTDSSGAVV 251
Query: 228 -----------------AWDLRKSQPYECYSELD--FDIPIGKHGDCYDRYLVRMMEMRE 268
W K Y ++ D +G E
Sbjct: 252 EEVPPDHYDLAIGERSEPWSYMKFPFYRNHAGRDGGGMFRVGPLARLNLCERAGTPEADR 311
Query: 269 SVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGE 328
++ RQ + + + ++ + V
Sbjct: 312 ELQTFRQLRGTGGVVTGSFHYHHARLIEILHALERIGELLDDPAILDRHVRSEAGVNRRH 371
Query: 329 VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFL--------CKGHQLAD- 379
EAP+G D R + + AM KG ++++
Sbjct: 372 GVGFCEAPRGTLFHDYEVDDDGLILRLNLLIATGQNNLAMNRTILEVARSHIKGGKVSEG 431
Query: 380 ----VSAILGSLDIVFGEV 394
+ + + D
Sbjct: 432 ILNRIEHGIRAYDPCLSCA 450
>gi|298492322|ref|YP_003722499.1| nickel-dependent hydrogenase large subunit ['Nostoc azollae' 0708]
gi|298234240|gb|ADI65376.1| nickel-dependent hydrogenase large subunit ['Nostoc azollae' 0708]
Length = 562
Score = 163 bits (413), Expect = 5e-38, Method: Composition-based stats.
Identities = 72/502 (14%), Positives = 126/502 (25%), Gaps = 129/502 (25%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + +E++ V H L RG E ++ K + R+ + + +
Sbjct: 45 VEGDLDVRVEIENGYVTNAWTHA-ELFRGFEIILRGKDPQAGLIVTPRICGICGGSHLSS 103
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRIL---------------------SHLLNVTT 118
+ A++ G EIP L R L + I SH +
Sbjct: 104 ASWALDTAWGTEIPRNAILARNLGQIVETIQSIPRYFYGLFAIDLTNKNYRRSHFYDEAC 163
Query: 119 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
+ T G K + Y G H++Y PGGV + +
Sbjct: 164 RRFAAFTGTSYEIGLTISAKPVEIYALLGGQWPHSSYMVPGGVMCAPTLTDITRAWAILE 223
Query: 179 SFPSAL-------------------NDISDLLTGNRIFK-----------------QRNV 202
F + + L + + +
Sbjct: 224 YFRTNWLEPVWLGCSLERYEEIQSYEEFQKWLNADVKHRESDLGLYWRMGLDIGLDRYGA 283
Query: 203 NIGTVKLEDAWGW----------GFSGVMIRGSGAAWDL------------RKSQPYECY 240
+G G + +I SG R++ + Y
Sbjct: 284 GVGKYVTWGYIPHEDKYNKPTIDGRNAAVIMKSGVYDSFTDTHTLMNQSFARENLTHSWY 343
Query: 241 SELDFDIP--------------IGKHGDCYDRYLVRMMEMR-ESVKIIRQCVNRLLGKNK 285
E D + ++ R E+ + RQ V
Sbjct: 344 DEGTEDWHPSDRTTLPTMNNNKDFGGAYSWAPAVLHQDLGRLEAGPLARQLVAGGKHGES 403
Query: 286 ---------------VGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV---G 327
G + + R E + FKL Y P G
Sbjct: 404 WQHYDPFILDVFKKMGGANVHVRQIARVHEIVKLYRQAERCLREFKLNDPWYIKPKEKDG 463
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLA 378
+ + A EA +G ++ +K ++ APG ++ +E G +
Sbjct: 464 KGWGATEAARGALCHWVEI-EDSKIKNYQVIAPGTWNIGPRDGAGQRGPIEQALIGTPIE 522
Query: 379 D------VSAILGSLDIVFGEV 394
D V + S D
Sbjct: 523 DANDPVEVGHVARSFDSCLVCT 544
>gi|3378678|emb|CAA74585.1| uptake hydrogenase [Rhodobacter sphaeroides]
Length = 475
Score = 163 bits (412), Expect = 5e-38, Method: Composition-based stats.
Identities = 69/473 (14%), Positives = 119/473 (25%), Gaps = 96/473 (20%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
GP + G L + LE+ V + L+RG E+++E + A+ R+ +
Sbjct: 6 VGPFN-RVEGDLEVHLEVAEGAVTAARVNAP-LYRGFERMLEGRDPRDALTITPRICGIC 63
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP--- 129
++Q A A A+ +G+ G+ + L + HL + M
Sbjct: 64 SISQSVAAARALGAAMGLVPAPAGERVAALIHAVENAADHLTHFNLFFMPDFTRPAYAGR 123
Query: 130 ------------------LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
R L+ +G H +PGGV +
Sbjct: 124 SWHGRAVARFTAMEGSAQREAVAARADLLHILGLLAGKWPHTLAVQPGGVTRAPGAAERM 183
Query: 172 DIGCWCDSFPSALN--------DISDLLTGNRIFKQRNVNIGTVKLE------------- 210
I SF L + L + LE
Sbjct: 184 RILSNLRSFRRHLERTLFGGPLEAFAALETEAALLSWGRGDAGLFLEIAADLGLGGLGRG 243
Query: 211 ------DAWGWGFSGVMIRG--------------------SGAAWDLRKSQPYECYSELD 244
G + S A + P E + D
Sbjct: 244 AGRYLSFGAYPLPEGPVFAAGTWQAGAPLPLDPGLIREDLSHAWMLGEAAHPAEGRTLPD 303
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA-- 302
++ + + + E+ + RQ V + ++ P
Sbjct: 304 EEM--REAAYSWCKAPRLDGRPMETGALARQVVAGHPLARDLARQGGVLARVGPRLLELA 361
Query: 303 DMKRSMESLIHHFKL-----YTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKI 357
ME L G + VEA +G G ++ G R +I
Sbjct: 362 RTHILMEELAQGIDPAARFMVAMGPLPREAQGAGLVEAARGALGHWVRLRG-GLLERYQI 420
Query: 358 RAPGYAHLQ---------AMEFLCKGHQLAD-------VSAILGSLDIVFGEV 394
AP + +E G + V ++ S D
Sbjct: 421 VAPTTRNFSPRDAEGVPGPLEAALVGAPVGPGETTPLSVQHVVRSFDPCMVCT 473
>gi|150401638|ref|YP_001325404.1| nickel-dependent hydrogenase large subunit [Methanococcus aeolicus
Nankai-3]
gi|150014341|gb|ABR56792.1| nickel-dependent hydrogenase large subunit [Methanococcus aeolicus
Nankai-3]
Length = 418
Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats.
Identities = 55/400 (13%), Positives = 105/400 (26%), Gaps = 47/400 (11%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD V HI L RG E+ + + + R+ +
Sbjct: 12 IEGHGKVTITLDDSGAPTDVKLHITAL-RGFEQFVVGRPAEEVPRIVPRICGICQTPHHL 70
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A AVE E+P +R L I SH L+ A
Sbjct: 71 ASVKAVEAAWDAEVPSAANKVRELMHLGNMIHSHSLHFYFLAAPDFVMGPDSNPATRNIV 130
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
A R+ G +H PGG+ + + D+
Sbjct: 131 GVIGEAPDVAKQAIALRKFGQTIVATTGGRPIHPVTGIPGGLSKSFAEADRDAFLAEVDT 190
Query: 180 FPSALNDISDLLTG-NRIFKQRNVNIGTVKLED--------AWGWGFSGVMIRGSGAAWD 230
+ L+ N + ++G + + + + G
Sbjct: 191 MIEYAQNGVALINSLNEKYADATKSLGVIDTWYLGMVKDGKHNFYEDTLRFVSPDGKTKQ 250
Query: 231 LRKSQPY----------ECYSELDFDIPIGKHGDCYDRYLVRMMEMRESV------KIIR 274
K Y YS+ ++ +G Y + M+ + +S+ + +
Sbjct: 251 EFKPAEYLDNIGEHVVEHSYSKYPYNKKVGYPDGLYRVGPLPMLNVCDSMATPLAEEARK 310
Query: 275 QCVNRLLGKNKVGPVSASDPKI-VPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAV 333
+ V I + +K + G A+
Sbjct: 311 EFVETFGAPANQSLAYNHARLIEILAACERVKELLNDGEITSTDVKAEVQPKAGNGVGAI 370
Query: 334 EAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK 373
AP+G +D + + ++ ME +
Sbjct: 371 YAPRGTLFHNYETDDNGIVIKGNMIVATTHNVPTMEKAIQ 410
>gi|327401446|ref|YP_004342285.1| hydrogen dehydrogenase [Archaeoglobus veneficus SNP6]
gi|327316954|gb|AEA47570.1| Hydrogen dehydrogenase [Archaeoglobus veneficus SNP6]
Length = 486
Score = 162 bits (411), Expect = 6e-38, Method: Composition-based stats.
Identities = 67/451 (14%), Positives = 125/451 (27%), Gaps = 79/451 (17%)
Query: 20 AHGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + L+ E V+R I L RG EK + +R+ V P
Sbjct: 13 LEGHGKIEIILNEEGNVDRAYFVIPEL-RGFEKFCVGRVAEDMPQITERICGVCPTAHHT 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A A++ L G+E P + IR L + + H L+
Sbjct: 72 ASTKALDDLFGVEPPPAARKIRELIYSLFMLEDHALHFYILGGPDFIVGPNAPKAERNVV 131
Query: 125 ------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
+ R+++ G +H + PGGV + I E + I +
Sbjct: 132 GVIKKVGVEVGKKVIGMRKEIRALMTHLGGKVVHPVFGLPGGVAKGIKEEERDGIIKLAE 191
Query: 179 SFPSAL--------------NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGV-MIR 223
+ DL+ + +G V + + V ++
Sbjct: 192 KGVEFAKFTLEVFHDIVLKNQEYVDLILSDAYRH-ETYYMGLVDENNCVNFYDGMVRVVS 250
Query: 224 GSGAAWDLRKSQPYECYSELDFDIPIGK-HGDCYDRYLVRMMEMRESVKIIRQCVNRL-- 280
G + Y Y + + ++ ES + RL
Sbjct: 251 PEGKEYAKFHCSEYADYIAEHVEPWTYMRFPYLKNVGWKGFVDGAESGIYSVAPLARLNA 310
Query: 281 --------------------LGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTE 320
K ++ +++ A +R +E +
Sbjct: 311 AEGMATPEANEAYNEMYETVGEKPVHYSLANHWARVIEMVYAA-ERLLELAMDDELTDGY 369
Query: 321 GYHVPVG----EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ--AME----- 369
++P G E + VEAP+G + SD + + + AM+
Sbjct: 370 IRNIPDGVARKEGFGVVEAPRGTLFHHYCSDENGVLTKVNLIVATQQNAARMAMDIDRVA 429
Query: 370 -FLCKGHQLAD-----VSAILGSLDIVFGEV 394
L K + D + + D
Sbjct: 430 KALIKNGNVNDGILNMIEMAFRAYDPCHACA 460
>gi|212223197|ref|YP_002306433.1| H-II alpha (hydrogenase subunit alpha) [Thermococcus onnurineus
NA1]
gi|212008154|gb|ACJ15536.1| H-II alpha (hydrogenase subunit alpha) [Thermococcus onnurineus
NA1]
Length = 415
Score = 162 bits (411), Expect = 6e-38, Method: Composition-based stats.
Identities = 60/398 (15%), Positives = 110/398 (27%), Gaps = 24/398 (6%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G + + ++ V+ V I R E L + + R+ + ++ A
Sbjct: 11 VEGNGKAEIVVENGEVKDVRLKIVEGPRFFELLTLGRHYYDVPDLEARICAICYLSHSVA 70
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ------------AMDVGALT 127
L +EK G+E+ QL+R L + SH L++ M
Sbjct: 71 SVLGIEKAFGVEVSEEIQLLRELGLIGELLESHALHLYLLVAPDVFGYPDAIRMATKHGE 130
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
G + E G +H +PGG + E +E+I +
Sbjct: 131 LVKEGLALKAFGNSIRELIGGREIHGINVKPGGFGRYPTVEELENIERESGALLRLARRA 190
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
L + ++ + S +S Y + +
Sbjct: 191 VRLFASLEPYGEKAGHFVATDGYLWGDKLISDEDGSFHYTERIEERSLVYSFAKQSRYKG 250
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
G L M + ++ + +L A ++V + +
Sbjct: 251 EPFFVGALPRLLLKAEMLTPTAKRLFEEHREKLATGYVSYNNLAQAIELVYALERAGEIA 310
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
+ L K V GE VEAP+G + D G K I P +
Sbjct: 311 KKLLDKGIKGENVPVEVKEGEGIGYVEAPRGVLIHHYRIDSGGKIAYSNIITPTALNHAM 370
Query: 368 MEFLC------------KGHQLADVSAILGSLDIVFGE 393
ME + + + + + D
Sbjct: 371 MEASLFKEARKLYGETDETVLVQRLEETVRAFDPCISC 408
>gi|70957342|gb|AAN65266.2| uptake hydrogenase large subunit [Anabaena siamensis TISTR 8012]
Length = 531
Score = 162 bits (411), Expect = 7e-38, Method: Composition-based stats.
Identities = 73/502 (14%), Positives = 128/502 (25%), Gaps = 129/502 (25%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + +E+D V H L RG E ++ K + R+ + + +
Sbjct: 14 VEGDLDVRVEIDNGYVTNAWTHA-ELFRGFEIILRGKDPQAGLIVTPRICGICGGSHLSS 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRIL---------------------SHLLNVTT 118
+ A++ G E+P L R L + I SH +
Sbjct: 73 ASWALDTAWGTEVPRNAILARNLGQIVETIQSIPRYFYGLFAIDLTNKNYRRSHFYDEAC 132
Query: 119 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
+ G K + Y G H++Y PGGV + +
Sbjct: 133 RRFAAFTGKSYELGVTISAKPVEIYALLGGQWPHSSYMVPGGVMCAPTLTDITRAWGILE 192
Query: 179 SFPSAL-------------------NDISDLLTGNRIFK-----------------QRNV 202
F + +D + L + + +
Sbjct: 193 YFRTNWLEPVWLGCSLERYEEIQSYDDFMNWLDEDVKHRESDLGLYWRMGLDIGLERFGA 252
Query: 203 NIGTVKLEDAWGW----------GFSGVMIRGSGAAWDL------------RKSQPYECY 240
+G G + +I SG R++ + Y
Sbjct: 253 GVGKYVTWGYLPHEDRYNKPTIEGRNAAVIMKSGVYDSFSDTHTLMDQSFARENLSHSWY 312
Query: 241 SELDFDIP--------------IGKHGDCYDRYLVRMMEMR-ESVKIIRQCVNRLLGKNK 285
E D + ++ R E+ + RQ V
Sbjct: 313 DEGTQDWHPSDRTTSPTINNQKDFSGAYSWASAVLHKDFGRLEAGPLARQLVAGGTHGES 372
Query: 286 ---------------VGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV---G 327
GP + + R E + FKL Y P G
Sbjct: 373 WQHYDPFILDVFKKMGGPSVHVRQLARVHEIVKLYRQAEHCLREFKLNDPWYIKPKEKDG 432
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLA 378
+ + A EA +G ++ K + ++ APG ++ +E G +
Sbjct: 433 KGWGATEAARGALCHWVDI-EEGKIKQYQVIAPGTWNIGPRDGAGQRGPVEEALIGTPIE 491
Query: 379 D------VSAILGSLDIVFGEV 394
D V + S D
Sbjct: 492 DPTDPVEVGHVARSFDSCLVCT 513
>gi|73667999|ref|YP_304014.1| coenzyme F420-reducing hydrogenase subunit alpha [Methanosarcina
barkeri str. Fusaro]
gi|85682154|sp|P80489|FRHA_METBF RecName: Full=Coenzyme F420 hydrogenase subunit alpha; AltName:
Full=8-hydroxy-5-deazaflavin-reducing hydrogenase
subunit alpha; Short=FRH
gi|2463279|emb|CAA74090.1| F420-reducing hydrogenase isoenzyme II alpha subunit
[Methanosarcina barkeri]
gi|72395161|gb|AAZ69434.1| coenzyme F420-reducing hydrogenase, alpha subunit [Methanosarcina
barkeri str. Fusaro]
Length = 456
Score = 162 bits (411), Expect = 8e-38, Method: Composition-based stats.
Identities = 76/427 (17%), Positives = 129/427 (30%), Gaps = 55/427 (12%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G +L L++D IVER D RG EKL KT Q R+ + P+
Sbjct: 13 LEGHSKLTLKVDDQGIVERGDWLSITPVRGIEKLAIGKTMEQVPKIASRVCGICPIAHTL 72
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLN----------------VTTQAMD 122
A A+E +G EIP +L+R + RI S L+ A +
Sbjct: 73 ASTEAMEASIGCEIPTDAKLLRTILHAANRIHSIALHNILILPDFYIPGTEKKFNLFANE 132
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS-FP 181
A + RE A G +H + R GG++ ++ P + +
Sbjct: 133 QPARSVMARIVRIREIAQTIGAIAGGEAIHPSNPRIGGMYYNVSPRAKQKMADLAKEGLV 192
Query: 182 SALNDISDLLTGNRIFKQR------------NVNIGTVKLEDAWGWGFSGVMIRGSGAAW 229
+ + R + R +G G W
Sbjct: 193 LVHEQMEFMFDVIRNMQNREFVEVAGKQIPLPKKLGYHNQGVMATASMYGSSSLDDNPTW 252
Query: 230 D---LRKSQPYECY------SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRL 280
D ++++P++ Y D PIG + +M Q V
Sbjct: 253 DFTRWKETRPWDWYMGEVTIDLEDPSYPIGGTTKIGTKANPQMEACTGVPTYDGQPVEVG 312
Query: 281 LGK--------NKVGPVSASDPKI--VPPKRADMKRSMESLIHHFKLYTEGYHVPVGE-- 328
++ G + + P + R +++L K+ + H+P G+
Sbjct: 313 PRARLATFKNFDEKGTFAQHIARQMEYPDCCYTILRCLDNLNTSGKVLAD--HIPQGDGS 370
Query: 329 -VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSL 387
+AA EAP+G K + P + G ++ +
Sbjct: 371 MGWAANEAPRGSNIHLARVK-DGKVLWYDMLVPTTWNFPTCSRALTGAPWQIAEMVVRAY 429
Query: 388 DIVFGEV 394
D
Sbjct: 430 DPCVSCA 436
>gi|120503|sp|P19496|FRHA_METTH RecName: Full=Coenzyme F420 hydrogenase subunit alpha; AltName:
Full=8-hydroxy-5-deazaflavin-reducing hydrogenase
subunit alpha; Short=FRH
gi|551889|gb|AAA72187.1| F420 hydrogenase alpha-subunit (frhA) [Methanothermobacter
thermautotrophicus]
Length = 405
Score = 162 bits (411), Expect = 8e-38, Method: Composition-based stats.
Identities = 64/382 (16%), Positives = 119/382 (31%), Gaps = 19/382 (4%)
Query: 21 HGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L++E+D E IV + RG EK++ K A R+ V P+ A
Sbjct: 14 EGHAELVMEVDDEGIVTKGRYFSITPVRGLEKIVTGKAPETAPVIVQRICGVCPIPHTLA 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGF----EE 135
A++ L IE+P G+L+R L + SH ++ A D E
Sbjct: 74 SVEAIDDSLDIEVPKAGRLLRELTLAAHHVNSHAIHHFLIAPDFVPENLMADAINSVSEI 133
Query: 136 REKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNR 195
R+ + +G +H + R GG+ +I + + +++ +L+ G
Sbjct: 134 RKNAQYVVDMVAGEGIHPSDVRIGGMADNITELARKRLYARLKQLKPKVDEHVELMIGLI 193
Query: 196 IFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDC 255
K +G G + + + P Y + +
Sbjct: 194 EDKGLPKGLGVHNQPTLASHQIYGDRTKFDLDRFT--EVMPESWYDDPEIAKRACSTIPL 251
Query: 256 YDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP--KRADMKRSMESLIH 313
YD V + R + G + G V+ + + A ++ L
Sbjct: 252 YDGRNVEVG--------PRARMVEFQGFKERGVVAQHVARALEMKTALARAIEILDELDT 303
Query: 314 HFKLYTEGYHVPVGE-VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLC 372
+ + G+ A+E P+G K P ++ M
Sbjct: 304 SAPVRADFDERGTGKLGVGAIEGPRGLDVHMAQV-ENGKIQFYSALVPTTWNIPTMGPAT 362
Query: 373 KGHQLADVSAILGSLDIVFGEV 394
+G ++ + D
Sbjct: 363 EGFHHEYGPHVIRAYDPCLSCA 384
>gi|300088030|ref|YP_003758552.1| nickel-dependent hydrogenase large subunit [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299527763|gb|ADJ26231.1| nickel-dependent hydrogenase large subunit [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 423
Score = 162 bits (410), Expect = 8e-38, Method: Composition-based stats.
Identities = 55/411 (13%), Positives = 107/411 (26%), Gaps = 41/411 (9%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G + LE ++RV + R E +++ + + R+ + + A
Sbjct: 14 VEGHGNIHLEATDGKLDRVLWEVTESPRFFEWMLKNRHYDDVSTISSRICGICSIAHTTA 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG------------ALT 127
A E I++ + L+R L + + SH+L+V
Sbjct: 74 SLQATEAAFNIKLSEQSWLLRKLLYDAELLESHVLHVLFLVAPDFLKADSVIPLVATHGD 133
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
+ ++ E +G + H GG + E ++ I D +
Sbjct: 134 VVVMAVRMKKLAYNLAEILAGRKTHPITPVVGGWAKLPDIEALKAIRERLDKAVDDAETM 193
Query: 188 SD----LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA-----AWDLRKSQPYE 238
L G F + I ++ +G + G + ++
Sbjct: 194 VAVVKSLAPGIPAFDRPTEYIAL--KDNREYAFITGKIASTDGGTVNLNDYAKVTNEFCV 251
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
S + + + K + L P S + V
Sbjct: 252 PQSSSKYARHKRDSYMVGALSRFNLNADQLLPKAKKAARELGLKAPVTNPFMISVAQTVE 311
Query: 299 --PKRADMKRSMESLIHHFKLYTE-GYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRC 355
D ++ L+ E G VEAP+G D
Sbjct: 312 TMHALEDAINIIDKLLARGIHEEEVKVKPRAGRGVGIVEAPRGMLIHDYTYDDSGHIVSA 371
Query: 356 KIRAPGYAH-LQA---MEFLCKGHQLAD---------VSAILGSLDIVFGE 393
P + L + L + D + ++ S D
Sbjct: 372 NCIIPTGQNHLSIQKDFDTLAP--TILDKPEEEIRHTLEMLVRSYDPCISC 420
>gi|77993210|dbj|BAE46791.1| uptake hydrogenase large subunit [Nostoc sp. PCC 7422]
Length = 531
Score = 162 bits (410), Expect = 9e-38, Method: Composition-based stats.
Identities = 75/502 (14%), Positives = 127/502 (25%), Gaps = 129/502 (25%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + ++++ V H L RG E ++ K + R+ + + +
Sbjct: 14 VEGDLDVRVDIEHGRVVNAWTHA-ELFRGFEIILRGKDPQAGLIVTPRICGICGGSHLTS 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV---------------- 123
+ A++ E+P L R L + I S
Sbjct: 73 ASWALDTAWETEVPRNAILARNLGQIVETIQSIPRYFYGLFAIDLTNKKYRNSRFYDEAT 132
Query: 124 -----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
G K + Y G H++Y PGGV + +
Sbjct: 133 RRFAAFTGKSYELGVTISAKPVEIYALLGGQWPHSSYMVPGGVMCAPTLTDITRAWAILE 192
Query: 179 SFPSAL-------------------NDISDLLTGNRIFK-----------------QRNV 202
F + +D D L NR + +
Sbjct: 193 YFRTNWLEPVWLGCSLERYEQIQSYDDFLDWLDENRNHRESDLGFYWRMGLDIGLDRYGA 252
Query: 203 NIGTVKLEDAWGW----------GFSGVMIRGSGAAWDL------------RKSQPYECY 240
+G G + MI SG R++ + Y
Sbjct: 253 GVGKYVTWGYLAHEDKYQKPTIEGRNAAMIMKSGVYDSFADTHTLMDQSFTRENTTHSWY 312
Query: 241 SELDFDIPIGK--------------HGDCYDRYLVRMMEMR-ESVKIIRQCVNRLLGKNK 285
E DI G + + ++ R E+ + RQ V
Sbjct: 313 DEGTADIHPGDRTTKPTANNIKDFDNAYSWASAVLHKDFGRLEAGPLARQLVAGGKHGES 372
Query: 286 ---------------VGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV---G 327
G + + R E + FKL Y P G
Sbjct: 373 WQHYDPFILDVFKRMGGASIHVRQLARLHEIVKLYRQAEHCLREFKLNDPWYIKPKEKDG 432
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLA 378
+ + A EA +G ++ G K ++ APG ++ +E G +
Sbjct: 433 KGWGATEAARGSLCHWVEI-EGGKIKNYQVIAPGTWNIGPRDGEGMRGPIEEALIGTPIY 491
Query: 379 D------VSAILGSLDIVFGEV 394
D V + S D
Sbjct: 492 DSSDPVEVGHVARSFDSCLVCT 513
>gi|289642380|ref|ZP_06474527.1| nickel-dependent hydrogenase large subunit [Frankia symbiont of
Datisca glomerata]
gi|289507812|gb|EFD28764.1| nickel-dependent hydrogenase large subunit [Frankia symbiont of
Datisca glomerata]
Length = 535
Score = 162 bits (410), Expect = 9e-38, Method: Composition-based stats.
Identities = 57/515 (11%), Positives = 116/515 (22%), Gaps = 131/515 (25%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
+ +N P G L + + + +V + RG E ++ K + R
Sbjct: 3 TVDLNVSPM-GRVEGDLDVRVAVSDGVVTSAWTQAA-MFRGFEIILRGKDPRAGLIVTPR 60
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV---- 123
+ + + + A A++ G IP L+R + + S
Sbjct: 61 ICGICGGSHLYKAAYALDVAWGTRIPPNATLVRNIAQACETLQSIPRYFYALFAIDLTNR 120
Query: 124 -----------------GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRP-------- 158
T G K Y G H+++ P
Sbjct: 121 KYARSPLYDEAVRRFAPYTGTSYAPGVVLSGKPTEVYAILGGQWPHSSFMVPGGVMGAPT 180
Query: 159 -----------GGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTV 207
+ + +D+ + N +
Sbjct: 181 LSDVTRSIAILEHWKHNWLEKYWLGCSVERWLANRTWDDVLAWVEENDSQHDSDCGFFIR 240
Query: 208 KLEDAWGWGFSGVMIRG---------------------------SGAA----------WD 230
D + G + SG
Sbjct: 241 YSRDIGLDTYGGGVGNYLATGTYFHPDLYAEPTIEGRNAALIARSGICSNGEFFTFDQRW 300
Query: 231 LRKSQPYECYSELDFDIP-------------IGKHGDCYDRYLVRM-----MEMRESVKI 272
+R+ + Y P + + + E+ +
Sbjct: 301 IREDVTHSFYEGTQARHPFDGETRPLDPQRGREQGKYSWAKAPRYHLSGQGYVPMEAGPL 360
Query: 273 IRQCVNRLLGKNKVGP--------VSASDPKIVPPKRADMKR----------SMESLIHH 314
R+ V G ++ P ++ + A M ++ L
Sbjct: 361 ARRIVAGAPGAAAHQDDDPLFTDIIARIGPSVLVRQLARMHEAARYYQWTRQWLDQLDLR 420
Query: 315 FKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL--------- 365
YT+ G + A EA +G +++ K ++ P ++
Sbjct: 421 ESFYTKPAEPAEGRGFGATEAARGSLADWIVI-EDGKIANYQVVTPTAWNIGPRDGSQTP 479
Query: 366 QAMEFLCKGHQLADVS------AILGSLDIVFGEV 394
+E G +AD + S D
Sbjct: 480 GPIEQALVGTPVADAEDPVELGHVARSFDSCLVCT 514
>gi|124484844|ref|YP_001029460.1| coenzyme F420-reducing hydrogenase, alpha subunit
[Methanocorpusculum labreanum Z]
gi|124362385|gb|ABN06193.1| coenzyme F420-reducing hydrogenase, alpha subunit
[Methanocorpusculum labreanum Z]
Length = 455
Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats.
Identities = 73/424 (17%), Positives = 127/424 (29%), Gaps = 51/424 (12%)
Query: 21 HGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +L+L+++ E I+ER D RG EKL KT+ Q R+ + P+ A
Sbjct: 14 EGHSKLVLKVNDEGIIERGDWLSITPVRGVEKLAIGKTYEQVPKIASRVCGICPIAHTLA 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLN----------------VTTQAMDV 123
A+E +G+EIP L+R++ R+ SH L+ V + +
Sbjct: 74 ATEAMEASMGVEIPDDAYLLRMILQCGNRLHSHALHDILALPDLYLPGTDIKVNPFSPEE 133
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD---SF 180
+ R E G +H + R GG++++I P I
Sbjct: 134 PVRSVAKRIQTLRMIGQTVGEIVGGEAVHPSNPRVGGMYKNITPRAKAKIYDLAKQGLQL 193
Query: 181 PSALNDISDLLTGNRIFKQRNVNI----------GTVKLEDAWGWGFSGVMIRGSGAAWD 230
+ L N + + G G WD
Sbjct: 194 AREQMEFMIALEENYMKRDWAEMCGREVAIPKELGYHNQGYMAAAPMYGSSSLDENPEWD 253
Query: 231 ------LRKSQPYECYSEL---DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN--- 278
+R Y E+ D P+G + +M Q V
Sbjct: 254 PARWLEVRPWDWYMGEEEITLEDPTYPVGGTTKAGTKAWPQMQACTGVPLYDGQPVEVGP 313
Query: 279 -----RLLGKNKVGPVSASDPKIVPP--KRADMKRSMESLIHHFKLYTEGYHVPVGE-VY 330
+ N+ G + + + + M +++++ + + GE +
Sbjct: 314 RARLVKYQNYNRKGAMGLNIARAMEYMDCMYKMIEAVDAIDTSASVCADVIPQGDGEIGW 373
Query: 331 AAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIV 390
AA EAP+G K + P + G I+ + D
Sbjct: 374 AANEAPRGCDVHLAKVR-NGKVEWFSMLVPTTWNFPVCSRALTGAPWELAEVIVRAYDPC 432
Query: 391 FGEV 394
Sbjct: 433 VSCA 436
>gi|15679302|ref|NP_276419.1| coenzyme F420-reducing hydrogenase, alpha subunit
[Methanothermobacter thermautotrophicus str. Delta H]
gi|2622407|gb|AAB85780.1| coenzyme F420-reducing hydrogenase, alpha subunit
[Methanothermobacter thermautotrophicus str. Delta H]
Length = 408
Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats.
Identities = 64/382 (16%), Positives = 119/382 (31%), Gaps = 19/382 (4%)
Query: 21 HGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L++E+D E IV + RG EK++ K A R+ V P+ A
Sbjct: 17 EGHAELVMEVDDEGIVTKGRYFSITPVRGLEKIVTGKAPETAPVIVQRICGVCPIPHTLA 76
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGF----EE 135
A++ L IE+P G+L+R L + SH ++ A D E
Sbjct: 77 SVEAIDDSLDIEVPKAGRLLRELTLAAHHVNSHAIHHFLIAPDFVPENLMADAINSVSEI 136
Query: 136 REKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNR 195
R+ + +G +H + R GG+ +I + + +++ +L+ G
Sbjct: 137 RKNAQYVVDMVAGEGIHPSDVRIGGMADNITELARKRLYARLKQLKPKVDEHVELMIGLI 196
Query: 196 IFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDC 255
K +G G + + + P Y + +
Sbjct: 197 EDKGLPKGLGVHNQPTLASHQIYGDRTKFDLDRFT--EVMPESWYDDPEIAKRACSTIPL 254
Query: 256 YDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP--KRADMKRSMESLIH 313
YD V + R + G + G V+ + + A ++ L
Sbjct: 255 YDGRNVEVG--------PRARMVEFQGFKERGVVAQHVARALEMKTALARAIEILDELDT 306
Query: 314 HFKLYTEGYHVPVGE-VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLC 372
+ + G+ A+E P+G K P ++ M
Sbjct: 307 SAPVRADFDERGTGKLGVGAIEGPRGLDVHMAQV-ENGKIQFYSALVPTTWNIPTMGPAT 365
Query: 373 KGHQLADVSAILGSLDIVFGEV 394
+G ++ + D
Sbjct: 366 EGFHHEYGPHVIRAYDPCLSCA 387
>gi|72537492|gb|AAO66476.2|AF368526_2 HupL [Lyngbya majuscula CCAP 1446/4]
Length = 537
Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats.
Identities = 68/503 (13%), Positives = 118/503 (23%), Gaps = 130/503 (25%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + +++ V L RG E ++ K + R+ + +
Sbjct: 19 VEGDLDVRVDIQDGQVVNA-WTQAQLFRGFEVILRGKDPQAGLIVTPRVCGICGASHLTC 77
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG---------ALTPPL 130
+ A++ E+P L + L + I SH
Sbjct: 78 ASWALDTAWETEVPRNAILAKNLGQLVETIQSHPRYFYGLFAIDLTNKKYQNSPFYEEAC 137
Query: 131 WGFE------------EREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
F K + Y G H+++ PGGV + +
Sbjct: 138 RRFAAYTGKSYEIGVTISAKPVEIYALFGGQWPHSSFMVPGGVMCAPTLTDITRAWSILE 197
Query: 179 SFPSAL-------------------NDISDLLTGNRIF-----------------KQRNV 202
F + +D L + +
Sbjct: 198 YFRTNWLEPVWLGCSLERYEEIQSYDDFMTWLGESPNHLNSDLGFYWRMGLDIGLDKFGA 257
Query: 203 NIGTVKLEDAWGW----------GFSGVMIRGSGA------------AWDLRKSQPYECY 240
G G + +I SG R++ + Y
Sbjct: 258 GTGKYMSWGYLLNEDRYQRPTIAGRNAAVIMKSGVYDSFNDTHQLMEHHFTRENTTHSWY 317
Query: 241 SELDFDIPIGKH---------------GDCYDRYLVRMMEMR-ESVKIIRQCVNRLLGKN 284
E + D+ + + R E + RQ V
Sbjct: 318 EEGNEDVHPFDRFTVPQQNNDVDFLEGAYTWSTAVKHQDMGRLEVGSLSRQLVAGGHHGE 377
Query: 285 KVGPV---------SASDPKIVPPKRADM------KRSMESLIHHFKLYTEGYH---VPV 326
P + + A M R +E + FKL Y
Sbjct: 378 SWQHYDGFILDMFKKMGGPSVHLRQLARMHEQVKLYRQVERCLREFKLREPWYIKPTPKD 437
Query: 327 GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQL 377
G + A EA +G ++ K +I AP ++ +E G +
Sbjct: 438 GRGWGATEASRGALCHWVEI-ENGKIKNYQILAPSTWNIGPRDGEGVRGPIEEALIGTPI 496
Query: 378 AD------VSAILGSLDIVFGEV 394
AD V + S D
Sbjct: 497 ADKNDPVEVGHVARSFDSCLVCT 519
>gi|2495221|sp|Q60338|FRHA_METJA RecName: Full=Coenzyme F420 hydrogenase subunit alpha; AltName:
Full=8-hydroxy-5-deazaflavin-reducing hydrogenase
subunit alpha; Short=FRH
Length = 415
Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats.
Identities = 61/387 (15%), Positives = 109/387 (28%), Gaps = 23/387 (5%)
Query: 21 HGVLRLILELDGEIVERVDPHIGLLH-RGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +LILE+D E + ++ RG E +++ K A R+ + A
Sbjct: 19 EGHAKLILEVDEEGIVNKAYYLNTTPVRGFETMLKGKPAEFAPIAVMRICGICQTTHGIA 78
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGF------ 133
A+E + E+P G L+R L R+ SH L+ D
Sbjct: 79 SCEAIENAIDCEVPDDGLLLRELVGIGNRLHSHPLHHLLTIDDFLKPDETDLKIELIKLI 138
Query: 134 -EEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLT 192
R+ + + G +H GG+ +I + + ++ + T
Sbjct: 139 QRMRKVGQLVVDIVGGEGIHPPNIVIGGMRTNITERAKSRLYYALRQYEKDAYELYEKYT 198
Query: 193 GNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAA--WDLRKSQP-YECYSELDFDIPI 249
+ ++ IG L + G A WD P Y + +
Sbjct: 199 E--LIERYLEEIGIPDLGAHEYPYIATHTTYGDRYAINWDDVTEIPAQRYYDDEEAKQTT 256
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
Y R + + + G + + R++E
Sbjct: 257 TIQIPLYAGVPAEGG--------PRARMVKFGNFREGGSAMDINIARAQENLGAVYRALE 308
Query: 310 SLIHHFK--LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
L G EAP+ K +I A +
Sbjct: 309 ILDELDLNGKTRAEVEYKDGFGIGVHEAPRATNTHMAEVGKDGKIKSYRIIAASTWNFPI 368
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEV 394
+E +G+ I+ + DI
Sbjct: 369 VEKAIEGYPQQYAEVIMRAYDICASCA 395
>gi|21229147|ref|NP_635069.1| coenzyme F420 hydrogenase subunit alpha [Methanosarcina mazei Go1]
gi|20907709|gb|AAM32741.1| Coenzyme F420 hydrogenase, alpha subunit [Methanosarcina mazei Go1]
Length = 455
Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats.
Identities = 77/426 (18%), Positives = 135/426 (31%), Gaps = 55/426 (12%)
Query: 21 HGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +L L+++ IVER D RG EKL KT Q R+ + P+ A
Sbjct: 14 EGHSKLTLKVNDQGIVERGDWLSITPVRGVEKLAIGKTMEQVPKIASRVCGICPVAHCLA 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLN----------------VTTQAMDV 123
A+E +G EIP +L+RV+ R+ S L+ + + +
Sbjct: 74 SIEAMEASIGCEIPKDAKLLRVILHAANRLHSIALHNILILPDFYIPGTETKINPFSKEE 133
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
+ F RE A G +H + R GG++Q++ P + I
Sbjct: 134 PFRSVATRIFRIREIAQTIAAIAGGEAIHPSNPRIGGMYQNVSPRAKQKIADLAKEGLVL 193
Query: 184 LNDISDLLTGNRIFKQRNVNI-------------GTVKLEDAWGWGFSGVMIRGSGAAWD 230
+++ + + Q + G G WD
Sbjct: 194 VHEQMEFMLDVIRDMQNREYVTVGGQNIPIPKTLGYHNQGVMATSPMYGSSSLDENPTWD 253
Query: 231 ---LRKSQPYECY------SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL 281
++++P+E Y D + PIG R +M Q V
Sbjct: 254 VTRWKETRPWEWYMGEVTIDLEDPNYPIGGTTKAGTRANPQMEACNSVPTYDGQPVEVGP 313
Query: 282 GK--------NKVGPVSASDPKI--VPPKRADMKRSMESLIHHFKLYTEGYHVPVGE--- 328
N+ G + + P + + ++ L K+ + H+P G+
Sbjct: 314 RARLATFKNFNEKGTFAQHIARQMEYPDCLYTILKCLDDLDTSGKVIAD--HIPQGDGSM 371
Query: 329 VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLD 388
+AA EAP+G + ++ P + KG ++ + D
Sbjct: 372 GWAANEAPRGTDIHLAKVK-DGRVLWYEMLVPTTWNFPTCSRGLKGAPWQIAEMVVRAYD 430
Query: 389 IVFGEV 394
Sbjct: 431 PCVSCA 436
>gi|254172827|ref|ZP_04879501.1| F420-non-reducing hydrogenase vhu subunit A [Thermococcus sp. AM4]
gi|214032983|gb|EEB73811.1| F420-non-reducing hydrogenase vhu subunit A [Thermococcus sp. AM4]
Length = 414
Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats.
Identities = 70/408 (17%), Positives = 120/408 (29%), Gaps = 45/408 (11%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G + + ++G V+ V I R E L + F R+ + ++ A
Sbjct: 11 VEGNGKAEIVIEGNEVKDVRVKIVEGPRFFELLTLGRDFWDVPDLEARICAICYLSHSVA 70
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV------------GALT 127
LA+E+ LG+E+P +L+R L I SH L++
Sbjct: 71 SVLAIERALGVEVPEETRLLRELGLIGELIESHSLHLYLLVAPDLFGYPDAIRLATKHGE 130
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
G + + G +H +PGG + E +E I + +
Sbjct: 131 LVKEGIALKAFGNRIRDLIGGREIHGINVKPGGFGRWPGREELEAIEWEAKALLTVAKRA 190
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
L + IG G + S + R Q +E E
Sbjct: 191 VRLFS----------GIGEYGGRAELFVATDGYLTGDSLISNVERNFQYFERIEERPLVY 240
Query: 248 PIGKHGDCYDRYLVRMMEMR-----ESVKIIRQCV-NRLLGKNKVGPVSASDPKIVPPKR 301
K + + R ES+ + + + + G VS ++ V
Sbjct: 241 SFAKQSLYSGKPFLVGSLARLLLKAESLTPTAKRLFEENRERLEAGWVSYNNLAQVIELV 300
Query: 302 ADMKRSMESLIHHFKLYTEGYHVP----VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKI 357
++R+ E E +VP GE VEAP+G + K I
Sbjct: 301 YALERAGEIAKTLLDKGFEPENVPVEAGDGEGIGYVEAPRGVLVHHYRI-ADGKIEYSNI 359
Query: 358 RAPGYAHLQAMEFLC------------KGHQLADVSAILGSLDIVFGE 393
P + ME + L + + + D
Sbjct: 360 ITPTAFNHAMMEGALLWEARNLYGNAPEDELLRRLEETVRAFDPCISC 407
>gi|325958396|ref|YP_004289862.1| Hydrogen dehydrogenase [Methanobacterium sp. AL-21]
gi|325329828|gb|ADZ08890.1| Hydrogen dehydrogenase [Methanobacterium sp. AL-21]
Length = 482
Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats.
Identities = 58/446 (13%), Positives = 115/446 (25%), Gaps = 73/446 (16%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ ++LD V H+ + RG EK +E +A R+ V
Sbjct: 12 IEGHAKITVQLDDAGNVSDAHFHVMEI-RGFEKFLEGAAVEEAPRITPRICGVCQTAHHV 70
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV--------------- 123
A A + + G+E P G+ +R L I SH L+
Sbjct: 71 VSAKATDAVFGLEPPETGKKLRELSLLGQYIHSHALHFYFLGGPDLVLGPDSDPAERNVV 130
Query: 124 ----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
+ R+ G +H PGG + + + +
Sbjct: 131 GIIKKNPDLAKMAIKTRKIGQEITTVVGGKPIHPVTSIPGGQSKVLTSGERDALLPKVQE 190
Query: 180 ----FPSALNDISDLLTGNRIFKQRNVNIGTVK---LEDAWGWGFSGVMIRGS------- 225
+ L L + + T + G M
Sbjct: 191 GIGLVETGLEVAKPLFETYANEIESLGPVETYFGSLTNGGALELYDGPMKIIDKNGGAVT 250
Query: 226 ------GAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVK------II 273
+ K QP+ Y + + IG Y + + + +SV +
Sbjct: 251 EFDTVNYLDYIEEKVQPWS-YMKFPYLKQIGFPEGNYRVGPLARLNIADSVNTERASALF 309
Query: 274 RQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP-------- 325
+ + + + + +E P
Sbjct: 310 GEFKDNFGTAQNPLLYHYARLVELMYCVERSIQLLEDDSITSTDIRTDLSEPLMSTADAK 369
Query: 326 ----VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME--------FLCK 373
+EAP+G +DG + + + +M+ + K
Sbjct: 370 NSDEKMRGVGVIEAPRGTLFHDYETDGAGIIQKANLIVASGQNNLSMDIGVRETAKAMIK 429
Query: 374 GHQLAD-----VSAILGSLDIVFGEV 394
G ++++ + I+ + D
Sbjct: 430 GDEVSEGLKNRLEMIVRAYDPCLSCA 455
>gi|302562807|ref|ZP_07315149.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
gi|302480425|gb|EFL43518.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
Length = 464
Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats.
Identities = 61/420 (14%), Positives = 113/420 (26%), Gaps = 52/420 (12%)
Query: 26 LILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVE 85
L L + V I R E L+ + + R+ + P+ + + AVE
Sbjct: 25 LRLRIHDRTVTEARLSIYEAPRFFEALLRGRAHTEPPDLTSRICGICPVAYQLSACRAVE 84
Query: 86 KLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA------------LTPPLWGF 133
G+++ R +R L I S L++ G
Sbjct: 85 DACGVDVDGRLARLRRLLYCGEWIESQTLHIYLLHAPDFLGHDDVIGMSRSEPAHVRRGL 144
Query: 134 EEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTG 193
++ E G +H R GG H+ + + D + G
Sbjct: 145 RLKQTGNAVVELLGGRAVHPVSVRLGGFHRTPTRTELRPLAEGLRVALDDAWDTVQWVAG 204
Query: 194 NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSG------AAWDLRKSQPYECYSELDFDI 247
+ E SGV ++ LR + +++
Sbjct: 205 FDFPEAECEADLLALAEPGTYAIESGVPTVVPYDATHPAWSFPLRTFCDHVTETQVPHST 264
Query: 248 PIGKHGD-------CYDRYLVRMM-------EMRESVKIIRQCVNRLLGKNKVGPVSASD 293
+ D RY V E S + + G V +
Sbjct: 265 ALHSRLDGRRHLTGSLARYAVSGHLLSPTALEAAASAGLDDPPLREGRDGTGQGTVCRNP 324
Query: 294 PKIVPPKRADMKRSMESLIHHFKLY----TEGYHVPV--GEVYAAVEAPKGEFGVYLISD 347
+ + + ++ ++E + Y + VP G + A EAP+G D
Sbjct: 325 FRSILVRAVEVFYAVEEALRIITEYERPASPYVPVPARSGVGHGATEAPRGLLYHRYAFD 384
Query: 348 GGNKPYRCKIRAPGYAHLQAMEFLCKGHQLA--D------------VSAILGSLDIVFGE 393
+ +I P + A+E + A D ++ + D
Sbjct: 385 REGRVTDARIIPPTAQNQGAIEEDLRRSVQAALDRGQDSEAELTRLCERVIRNHDPCISC 444
>gi|88603577|ref|YP_503755.1| nickel-dependent hydrogenase, large subunit [Methanospirillum
hungatei JF-1]
gi|88189039|gb|ABD42036.1| coenzyme F420-reducing hydrogenase, alpha subunit [Methanospirillum
hungatei JF-1]
Length = 469
Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats.
Identities = 74/426 (17%), Positives = 129/426 (30%), Gaps = 55/426 (12%)
Query: 21 HGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +L+L+++ I+ER D RG EKL KT QA R+ + P+ A
Sbjct: 28 EGHSKLVLKVNDAGIIERGDWLSITPVRGIEKLCVGKTMHQAPKISSRVCGICPIAHTLA 87
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLN----------------VTTQAMDV 123
A+E +G EIP L+R + R+ SH L+ + +
Sbjct: 88 GVGAMEASIGCEIPQDAYLLRTILQCANRLHSHALHNILSLPDMYIPGTDTKINPFTPEE 147
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS- 182
T RE E G +H R GG++ +I P+ + I
Sbjct: 148 PVRTVAKRIQRLREIGQTVGEIVGGEAIHPGNPRVGGMYYNISPQAKQKIYDLAKEALPL 207
Query: 183 ---ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAA---------WD 230
++ + + V V++ + +GW G M WD
Sbjct: 208 AIAQMDFMIAVFKNWENRGTVTVGKTEVEIPEKFGWHDQGYMAVDPVFDSSSLDFEPKWD 267
Query: 231 LRKSQPYECYSEL---------DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN--- 278
+ Y+ D D P+G + +M Q V
Sbjct: 268 PDRWTDVSPYNWYQGELEVSLEDADYPVGGTTKVGTKTWPQMQACTSVPLYDGQPVEVGP 327
Query: 279 -------RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGE--- 328
+ + + + P M + ++L + + + +P G+
Sbjct: 328 RARLVQFKNYDRKGAMGLQIARQMEYPDCLYTMIEACDALDCNGSVLAD--EIPQGDGSL 385
Query: 329 VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLD 388
+ A EAP+G K + P + +G I+ + D
Sbjct: 386 GWNANEAPRGCDVHLARVK-DGKVQEYTLLVPTTWNFPTCSRALEGAPWQLAEVIMRAYD 444
Query: 389 IVFGEV 394
Sbjct: 445 PCVSCA 450
>gi|307151550|ref|YP_003886934.1| nickel-dependent hydrogenase large subunit [Cyanothece sp. PCC
7822]
gi|306981778|gb|ADN13659.1| nickel-dependent hydrogenase large subunit [Cyanothece sp. PCC
7822]
Length = 531
Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats.
Identities = 68/502 (13%), Positives = 118/502 (23%), Gaps = 129/502 (25%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + ++++ V H L RG E ++ K + R+ + +
Sbjct: 14 VEGDLDVRVDIEDGYVVNAWTHA-ELFRGFEVILRGKDAQAGLIVTPRVCGICGASHLTC 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV---------------- 123
+ A++ G E+P L R L + I SH +
Sbjct: 73 ASWALDTAWGTEVPRNAILARNLGQLVETIQSHPRHFYALFAIDLINKKYKNSPFYEEAT 132
Query: 124 -----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
G K + Y G H+++ PGGV + +
Sbjct: 133 RRFAAFTGKSYEVGITVSGKPIEIYALFGGQWPHSSFMVPGGVMCAPTLTDITRAWSILE 192
Query: 179 SFPSAL-------------------NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
F + +D L + ++ D +
Sbjct: 193 YFRTNWLEPVWLGCSLERYEEIQTYDDFMSWLDESPAHANSDLGFYWRMGLDIGLDKYGV 252
Query: 220 VMIRGSGAAW---------------------------------------DLRKSQPYECY 240
R S + R++ + Y
Sbjct: 253 GCGRYSSWGYLPHEDKYQKPTIEGRNAALIMKSGNYDSFTDTHTLMDHSYTRENTTHSWY 312
Query: 241 SELDFDIP--------------IGKHGDCYDRYLVRMMEMR-ESVKIIRQCVNRLLGKNK 285
E D+ + + R E + RQ V
Sbjct: 313 EEGTADVHPFDRFTVPSQNNVKDFDQAYSWASAVSHKDLGRMEVGSLARQLVAGGRHGES 372
Query: 286 VGPV---------SASDPKIVPPKRADMKRS------MESLIHHFKLYTEGYHVPV---G 327
I + A M S +E + F+L Y P G
Sbjct: 373 WQHYDGFILDMFKKMGGASIHLRELARMHESVKLYRQVEHCLREFQLKEPWYIKPKEKNG 432
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLA 378
+ A EA +G ++ K +I AP + +E G +
Sbjct: 433 RGWGATEASRGSLCHWIEV-ESGKIKNYQIIAPTTWNVGPRDGEGVQGPIEQALIGTPVQ 491
Query: 379 D------VSAILGSLDIVFGEV 394
D V + S D
Sbjct: 492 DPTDPVEVGHVARSFDSCLVCT 513
>gi|163848318|ref|YP_001636362.1| nickel-dependent hydrogenase large subunit [Chloroflexus
aurantiacus J-10-fl]
gi|222526233|ref|YP_002570704.1| nickel-dependent hydrogenase large subunit [Chloroflexus sp.
Y-400-fl]
gi|163669607|gb|ABY35973.1| nickel-dependent hydrogenase large subunit [Chloroflexus
aurantiacus J-10-fl]
gi|222450112|gb|ACM54378.1| nickel-dependent hydrogenase large subunit [Chloroflexus sp.
Y-400-fl]
Length = 545
Score = 160 bits (406), Expect = 3e-37, Method: Composition-based stats.
Identities = 61/503 (12%), Positives = 122/503 (24%), Gaps = 130/503 (25%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L L + + +V + RG E +++ K + R+ + +
Sbjct: 24 VEGDLDLRVTIRDGVVTSA-WTEASMFRGFEIILKGKDPQAGLIVTPRICGICGGSHLTK 82
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV---------------- 123
A++ E+P LIR + + S
Sbjct: 83 AVYALDTAWQTELPPNATLIRNIAQACETLQSIPRWFYALFAIDLTNKKYAHLPEYDEAV 142
Query: 124 -----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIP------------ 166
T G K + Y G H+++ PGGV
Sbjct: 143 RRFAPFVGTSYEHGVTLSNKPVEIYAIFGGQWPHSSFMIPGGVMCAPTLADVTRAIAILE 202
Query: 167 ---PELVEDIGCWCDSFPS----ALNDISDLLTGNRIFKQR-------------NVNIGT 206
E +E C + D+ + + N G
Sbjct: 203 YWKDEWLEKKWLGCSVDRWLQNKSWADVMEWMHENERHYNSDCGFFLRFAMAAGLDKYGA 262
Query: 207 VKLEDAWGWGFSGVMIRGS-------------------GAAWDL-----RKSQPYECYSE 242
+ + G +D R+ + Y
Sbjct: 263 GWNNYLATGTYFHPELYARPTIEGRNAALIARSGVYVNGQFYDFDQAQVREDVSHSFYEG 322
Query: 243 L-------------DFDIPIGKHGDCYDRYLVRMM-----EMRESVKIIRQCVNRLLGK- 283
D ++ + + + ++ E+ + RQ + G
Sbjct: 323 NHVLHPFEGRTEPIDPEVGRRQGKYTWAKAPRYLIPGVGSHPLEAGPLARQVIAGRPGAA 382
Query: 284 ----------------NKVGPVSASDPKIVPPKR-ADMKRSMESLIHHFKLYTEGYHVPV 326
V PK +++ ++ + H K Y + +P
Sbjct: 383 DWQDYDPLFLDAVTTVGPSVLVRVMARMHEAPKYYKLVRKWLDQINLHEKFYIKPKELPE 442
Query: 327 GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQL 377
G + + EA +G +++ K ++ P ++ ME G +
Sbjct: 443 GRGFGSTEAARGSLSDWIVLK-DGKIENYQVITPTAWNIGPRDSREVNGPMEQAFLGAPI 501
Query: 378 AD------VSAILGSLDIVFGEV 394
AD + + S D
Sbjct: 502 ADPNDPVELGHVARSYDSCLVCT 524
>gi|162452851|ref|YP_001615218.1| hypothetical protein sce4575 [Sorangium cellulosum 'So ce 56']
gi|161163433|emb|CAN94738.1| hypothetical protein sce4575 [Sorangium cellulosum 'So ce 56']
Length = 470
Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats.
Identities = 57/424 (13%), Positives = 105/424 (24%), Gaps = 49/424 (11%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L L ++ + I R E + + F +A R+ + P+ +
Sbjct: 34 VEGEGSLTLVIEDGRAKEARLSIFEPPRFFEAFLRGRGFAEAPDITSRICGICPVAYITS 93
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG------------ALT 127
A+E LGIE+ + +R L I SH L+V
Sbjct: 94 ACRAMEDALGIELGPELRALRRLLYCGEWIESHALHVFLLHAPDFLGYPDAVAMARDHRD 153
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
G ++ G +H R GG + +E + +
Sbjct: 154 WVAKGLAIKKAGNAVVALLGGREIHPVNTRVGGFYSAPSRADLEGLLPELRAGSERTRAC 213
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ + D G ++ G ++R + + +
Sbjct: 214 LSWMATLPCPELERPYEFVALRSDDVYAIAEGRLVSSGGLDIEVRDYDVHFVEEHVSWST 273
Query: 248 PI----------GKHGDCYDRYLVRMMEMRESVKIIR--------------QCVNRLLGK 283
+ GD R + R L
Sbjct: 274 ALRSRIRGSGRRAPAGDPEPRASEHGSGSYLCGPLARFNLSFDRLLPEVQDAARAAGLAI 333
Query: 284 NKVGPVSASDPKIVPP--KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFG 341
P+ + ++V + R +E+ + + G Y EAP+G
Sbjct: 334 PCRNPLRSLLVRLVEILQAFEESIRIIEAYALPPAPFVAPRALRAGTGYGGSEAPRGFLY 393
Query: 342 VYLISDGGNKPYRCKIRAPGYAH-------LQAMEFLCKGHQL----ADVSAILGSLDIV 390
D KI P + L A+ + A + + D
Sbjct: 394 HRYTLDAEGTILDAKIVPPTSQNQLSIEEDLCALSPSLASLPVREATARAEQAVRNHDPC 453
Query: 391 FGEV 394
Sbjct: 454 ISCA 457
>gi|219847415|ref|YP_002461848.1| nickel-dependent hydrogenase large subunit [Chloroflexus aggregans
DSM 9485]
gi|219541674|gb|ACL23412.1| nickel-dependent hydrogenase large subunit [Chloroflexus aggregans
DSM 9485]
Length = 545
Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats.
Identities = 62/503 (12%), Positives = 122/503 (24%), Gaps = 130/503 (25%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L L + + +V + RG E +++ K + R+ + +
Sbjct: 24 VEGDLDLRVTIRDGVVTSA-WTEASMFRGFEIILKGKDPQAGLIVTPRICGICGGSHLTK 82
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV---------------- 123
A++ E+P LIR + + S
Sbjct: 83 AVYALDTAWQTELPPNATLIRNIAQACETLQSIPRWFYALFAIDLTNKKYAHLPEYDEAV 142
Query: 124 -----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIP------------ 166
T G K + Y G H+++ PGGV
Sbjct: 143 RRFAPFVGTSYEHGVTLSNKPVEIYAIFGGQWPHSSFMIPGGVMCAPTLADVTRAIAILE 202
Query: 167 ---PELVEDIGCWCDSFPS----ALNDISDLLTGNRIFKQR-------------NVNIGT 206
E +E C + D+ + + N G
Sbjct: 203 YWKDEWLEKKWLGCSVDRWLQNKSWADVMEWMNENERHYNSDCGFFIRFAMAAGLDKYGA 262
Query: 207 VKLEDAWGWGFSGVMIRGS-------------------GAAWDL-----RKSQPYECYSE 242
+ + G +D R+ + Y
Sbjct: 263 GWNNYIATGTYFHPELYARPTIEGRNAALIARSGVYVNGQFYDFDQANVREDVTHSFYEG 322
Query: 243 L-------------DFDIPIGKHGDCYDRYLVRMM-----EMRESVKIIRQCVNRLLGK- 283
D I + + + ++ + E+ + RQ + G
Sbjct: 323 NHALHPFEGRTEPIDPAIGHRQGKYSWAKAPRYLIPGVGSQPVEAGPLARQVIAGRPGAA 382
Query: 284 ----------------NKVGPVSASDPKIVPPKR-ADMKRSMESLIHHFKLYTEGYHVPV 326
V PK +++ ++ + H K Y + +P
Sbjct: 383 NWQDYDPLFLDAVTTVGPSVLVRVMARMHEAPKYYKLVRKWLDQINLHEKFYIKPKELPE 442
Query: 327 GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQL 377
G + + EA +G +++ K ++ P ++ ME G +
Sbjct: 443 GRGFGSTEAARGSLSDWIVLK-DGKIENYQVVTPTAWNIGPRDGRDVNGPMEQAFLGAPI 501
Query: 378 AD------VSAILGSLDIVFGEV 394
AD + + S D
Sbjct: 502 ADPNDPVELGHVARSYDSCLVCT 524
>gi|189220402|ref|YP_001941042.1| coenzyme F420-reducing hydrogenase, alpha subunit
[Methylacidiphilum infernorum V4]
gi|189187260|gb|ACD84445.1| Coenzyme F420-reducing hydrogenase, alpha subunit
[Methylacidiphilum infernorum V4]
Length = 432
Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats.
Identities = 54/407 (13%), Positives = 110/407 (27%), Gaps = 33/407 (8%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G + +E++ V+ HI R E + + F + R+ + P+ + +
Sbjct: 18 VEGEGGISIEVEKGKVKSCKLHIFEAPRFFESFLIGRHFYEPPDITARICGICPVAYQVS 77
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG------------ALT 127
A+EK + IP +R L I SH L+V T
Sbjct: 78 STAAIEKGCNVLIPENLWQLRRLLYCGEWIESHSLHVFFLHAPGFLRYPSLMEMAKDYPT 137
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
WG + ++ G +H R GG + + ++ +
Sbjct: 138 EVGWGLQMKKAGNALIRTLGGREIHPVNVRVGGFYSLPEKKELKKLLDPLKKGLDNTLAA 197
Query: 188 SDLL---TGNRIFKQRNVNIGT-----VKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
+ F+ + +E + + + + Y
Sbjct: 198 LKWMGSTFSFPPFQGAYRFVALRNDASYPIERGQLYCGQQPVPIEQFENFFKEEQTDYSN 257
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVK-IIRQCVNRLLGKNKVGPVSASDPKIVP 298
+ R+ + + ++ I++Q N + ++
Sbjct: 258 ALRWLGNDSAPCVAGPLARFNLNYYLLPPFLRDILKQTTLNYPCLNPFQSILVRLVEVA- 316
Query: 299 PKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
+ R +E+ + + EAP+G D KI
Sbjct: 317 YAFDEAIRLIETYEPEGEPCCIDFKPCASLGQGISEAPRGILYHRYHVDEQGIITGAKIV 376
Query: 359 APGYAHLQAMEFLCKG-----------HQLADVSAILGSLDIVFGEV 394
P +L + E K + AD I+ + D
Sbjct: 377 PPTCFNLVSAEEDLKAWIESHPHDSIENLSADCEQIVRNYDPCISCA 423
>gi|224550169|gb|ACN54169.1| NADH dehydrogenase I subunit D [Wolbachia endosymbiont of Nasonia
longicornis]
gi|224550171|gb|ACN54170.1| NADH dehydrogenase I subunit D [Wolbachia endosymbiont of Nasonia
giraulti]
Length = 189
Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats.
Identities = 113/193 (58%), Positives = 148/193 (76%), Gaps = 4/193 (2%)
Query: 108 RILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP 167
RIL+HLLN+++QA+DVGA+TP LW FEEREK++ FYERASG+R HAAY RPGGV DIP
Sbjct: 1 RILNHLLNISSQALDVGAMTPLLWLFEEREKILEFYERASGARFHAAYIRPGGVAADIPE 60
Query: 168 ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA 227
L+EDI + FP ++D+ +LLT NRI+KQR V I + +++A WGFSG M+R +G
Sbjct: 61 GLIEDIAKFIAQFPKYIDDVDELLTENRIWKQRTVEISKISIKEALDWGFSGPMLRAAGL 120
Query: 228 AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVG 287
AWDLRKSQPYE Y +LDFDIPIG++GDCYDRYLVRM E+R+S+ +++QC+ ++ G
Sbjct: 121 AWDLRKSQPYEIYDQLDFDIPIGQNGDCYDRYLVRMAEIRQSISLVKQCIEKI----PKG 176
Query: 288 PVSASDPKIVPPK 300
P+ D KI PP
Sbjct: 177 PIKTEDRKISPPP 189
>gi|94263616|ref|ZP_01287426.1| Nickel-dependent hydrogenase, large subunit [delta proteobacterium
MLMS-1]
gi|93456036|gb|EAT06187.1| Nickel-dependent hydrogenase, large subunit [delta proteobacterium
MLMS-1]
Length = 496
Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats.
Identities = 68/457 (14%), Positives = 122/457 (26%), Gaps = 84/457 (18%)
Query: 20 AHGVLRLILELD--GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQE 77
G ++ + LD GE V I L RG E+ + + DR+ V P
Sbjct: 12 LEGHGKIEIFLDERGE-VANTYFQIPEL-RGFEQFCVGRQAEEMPVITDRICGVCPEAHH 69
Query: 78 HAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG------------- 124
A A++ L G+E P +L+R + I H +
Sbjct: 70 LAATKALDALFGVEPPPAAKLLREVLYMAFFITDHATHFYALGGPDFIVGPDAPPSERNL 129
Query: 125 -------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWC 177
L R + + G +H PGG + I +++
Sbjct: 130 LGVIRKVGLDIGKEVIACRLRNHQVIKLLGGRGIHPVAGLPGGWSRSINQAERDELKEIA 189
Query: 178 DSFPSALNDISDLL----TGNR---------IFKQRNVNIGTVKLEDAWGWGF-----SG 219
D+ N FK + IG V ++ + G
Sbjct: 190 RRNLEFARFSLDIFQKVVLDNPAYLELITAETFKHQTYYIGLVDEQNRPNFYHGQVRVVG 249
Query: 220 V----MIRGSGAAWDLRKSQPYECYSELDFDI--PIGKHGDC-------------YDRYL 260
++R + + ++ E +S L F +G G +
Sbjct: 250 PEGRELLRYHPDQYHEQIAERVEPWSYLKFPYLKAVGWRGLVDGPASGVYTSSPLSRLNV 309
Query: 261 VRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK-----RSMESLIHHF 315
M E+ + L + + G ++ ++ M L+
Sbjct: 310 ADAMATPEAQAEFERFFETLGSRKQAGRYQPVHLRLATHWARLIELLYAAERMAELLDDP 369
Query: 316 KLYTEGYHVPV----GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFL 371
++ + P G VEAP+G + SD R + + M
Sbjct: 370 EITSPAVRNPPQAVTGRGVGCVEAPRGLLTHHYESDQRGVLTRVNMIVGTTNNYAPMSMS 429
Query: 372 CK---------GHQLAD-----VSAILGSLDIVFGEV 394
K G + + + D
Sbjct: 430 IKQAAQHFIKAGQVVEEGMLNRIEMAFRLYDPCLSCA 466
>gi|118473853|ref|YP_888217.1| [NiFe] hydrogenase, subunit alpha [Mycobacterium smegmatis str. MC2
155]
gi|118175140|gb|ABK76036.1| [NiFe] hydrogenase, alpha subunit, putative [Mycobacterium
smegmatis str. MC2 155]
Length = 430
Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats.
Identities = 47/405 (11%), Positives = 105/405 (25%), Gaps = 31/405 (7%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + L V +I R E + + + R+ + P+ + +
Sbjct: 16 VEGEGALHVTLRDGAVVGTQLNIYEPPRFFEAFLRGRAHTEPPDLTARVCGICPVAYQVS 75
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG------------ALT 127
A+E G+ + +R L I SH L++ +
Sbjct: 76 ACNAIEDACGVTVDPEIVQLRRLLYCGEWIHSHALHIFLLHLPDFLGHPDGISLAREHPE 135
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
G ++ E+ G +H R GG + P ++ +
Sbjct: 136 LVERGLSLKKTGNRIMEQIGGRAIHPVNVRLGGFYSAPKPGDLKSLAALLRKSLDDALYT 195
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ + SG ++R +G ++ L + +++
Sbjct: 196 VREVADLDCPDVVFDHEFLALGTADAYPIESGAIVRSAGPSFPLADFTTHVGEAQVPHST 255
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
+ D + + + +G + + + + ++ +
Sbjct: 256 ALHAALDDGRYLTGPLARYSLNSAHLPPIAREAATSAGLGAQCRNPFRSIVVRAVEVVFA 315
Query: 308 MESLIHHFKLYTEGYHV------PVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+E + Y E G + EAP+G + P
Sbjct: 316 IEEALRIIAEYQEPPRPFVEVPARAGVGHGVSEAPRGLLYHRYEIGHDGLVRTATLIPPT 375
Query: 362 YAHLQAMEFLCKGHQLA------DVSAI------LGSLDIVFGEV 394
+ A+E +A D + + D
Sbjct: 376 AQNQAAIEHELA-VLVAANLDRDDAELTQLCERAIRNHDPCISCA 419
>gi|186680898|ref|YP_001864094.1| nickel-dependent hydrogenase, large subunit, HupL [Nostoc
punctiforme PCC 73102]
gi|186463350|gb|ACC79151.1| nickel-dependent hydrogenase, large subunit, HupL [Nostoc
punctiforme PCC 73102]
Length = 531
Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats.
Identities = 74/502 (14%), Positives = 125/502 (24%), Gaps = 129/502 (25%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + ++++ V H L RG E ++ K + R+ + + +
Sbjct: 14 VEGDLDVRVDIEHGRVVNAWTHA-ELFRGFEVILRGKDPQAGLIVTPRICGICGGSHLTS 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV---------------- 123
+ A++ E+P L R L + I S
Sbjct: 73 ASWALDTAWETEVPRNAILARNLGQIVETIQSIPRYFYGLFAIDLTNKKYRNSRHYEEAV 132
Query: 124 -----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
G K + Y G H++Y PGGV + +
Sbjct: 133 RRFAAFTGKSYELGITISAKPVEIYALLGGQWPHSSYMVPGGVMCAPTLTDITRAWAILE 192
Query: 179 SFPSAL-------------------NDISDLLTGNRIFKQ-----------------RNV 202
F + +D D L +R +
Sbjct: 193 YFRTNWLEPVWLGCSLERYEQIQTYDDFRDWLDEDRNHRDSDLGFYWRMGLDIGLDRYGA 252
Query: 203 NIGTVKLEDAWGW----------GFSGVMIRGSGAAWDL------------RKSQPYECY 240
+G G + MI SG R++ + Y
Sbjct: 253 GVGKYVTWGYLAHEDKYQKPTIEGRNAAMIMKSGVYDSFADTHVLMDQSFTRENTTHSWY 312
Query: 241 SELDFDIP--------------IGKHGDCYDRYLVRMMEMR-ESVKIIRQCVNRLLGKNK 285
E DI + + ++ R E+ + RQ V
Sbjct: 313 DEGTEDIHPSDRTTKPTAINTKDFDNAYSWSSAVLHKDFGRLETGPLARQLVAGGQHGES 372
Query: 286 ---------------VGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV---G 327
GP + + R E + FKL Y P G
Sbjct: 373 WQHYDGFILDVFKQMGGPSIHVRQLARLHEIVKLYRQAEHCLREFKLNDPWYIKPKEKDG 432
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLA 378
+ A EA +G ++ G K ++ APG ++ +E G +
Sbjct: 433 RGWGATEAARGSLSHWVEI-EGGKIKNYQVIAPGTWNIGPRDGEGIRGPIEEALIGTPIY 491
Query: 379 D------VSAILGSLDIVFGEV 394
D V + S D
Sbjct: 492 DSSDPVEVGHVARSFDSCLVCT 513
>gi|224550167|gb|ACN54168.1| NADH dehydrogenase I subunit D [Wolbachia endosymbiont of Nasonia
longicornis]
Length = 188
Score = 160 bits (404), Expect = 5e-37, Method: Composition-based stats.
Identities = 113/192 (58%), Positives = 148/192 (77%), Gaps = 4/192 (2%)
Query: 108 RILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP 167
RIL+HLLN+++QA+DVGA+TP LW FEEREK++ FYERASG+R HAAY RPGGV DIP
Sbjct: 1 RILNHLLNISSQALDVGAMTPLLWLFEEREKILEFYERASGARFHAAYIRPGGVAADIPE 60
Query: 168 ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA 227
L+EDI + FP ++D+ +LLT NRI+KQR V I + +++A WGFSG M+R +G
Sbjct: 61 GLIEDIAKFIAQFPKYIDDVDELLTENRIWKQRTVEISKISIKEALDWGFSGPMLRAAGL 120
Query: 228 AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVG 287
AWDLRKSQPYE Y +LDFDIPIG++GDCYDRYLVRM E+R+S+ +++QC+ ++ G
Sbjct: 121 AWDLRKSQPYEIYDQLDFDIPIGQNGDCYDRYLVRMAEIRQSISLVKQCIEKI----PKG 176
Query: 288 PVSASDPKIVPP 299
P+ D KI PP
Sbjct: 177 PIKTEDRKISPP 188
>gi|45358945|ref|NP_988502.1| coenzyme F420-reducing hydrogenase subunit alpha [Methanococcus
maripaludis S2]
gi|45047811|emb|CAF30938.1| coenzyme F420-reducing hydrogenase subunit alpha [Methanococcus
maripaludis S2]
Length = 414
Score = 160 bits (404), Expect = 5e-37, Method: Composition-based stats.
Identities = 65/388 (16%), Positives = 113/388 (29%), Gaps = 20/388 (5%)
Query: 21 HGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +L+L +D E IV + RG E +++ KT R+ + A
Sbjct: 14 EGHAKLVLNVDDEGIVTKAFYPNTTPVRGFETMLQGKTAAFGPIAVMRICGICQATHGIA 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSH----LLNVTTQAMDVGALTPPLWGFEE 135
A+E + +EIP G ++R L R+ SH LL V A T + G +
Sbjct: 74 SCEAIENAIDMEIPKDGMILRELLGLGNRMHSHPLHHLLIVDDFLKPEEAGTLRVEGIKL 133
Query: 136 ----REKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLL 191
R+ + + G +H GG+ +I + C + N + ++L
Sbjct: 134 IQKMRKAGQMVVDITGGEGIHPPNLMVGGMRTNITERAKSKLYYACREYEKDCNAMLEVL 193
Query: 192 TGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGK 251
+ I + + W P + Y DF
Sbjct: 194 EMLMERYLDEIGIPDLGKHNLPYIATDSTFGNRDAINWKDVTEVPAQRY-YADFPDIAQT 252
Query: 252 HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESL 311
++ E R + G + +KRS+E +
Sbjct: 253 AT---NQIPFYRGNPAEGGPRARMI--KYGNFKPAGGAMDLNLARAMENFEAVKRSLELI 307
Query: 312 IHHFKLYTEGYHV-----PVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
T EAP+ + + I A +
Sbjct: 308 DELNINGTVREVPNFYNAKEEFGIGVHEAPRATNTHMAKMGKDGRIEKYNIIAASTWNFP 367
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEV 394
A+E +G+ I+ + DI
Sbjct: 368 AVEKAIEGYHHQYAEVIMRAYDIUASCA 395
>gi|118588154|ref|ZP_01545563.1| Coenzyme F420-reducing hydrogenase, alpha subunit [Stappia
aggregata IAM 12614]
gi|118438860|gb|EAV45492.1| Coenzyme F420-reducing hydrogenase, alpha subunit [Stappia
aggregata IAM 12614]
Length = 480
Score = 160 bits (404), Expect = 5e-37, Method: Composition-based stats.
Identities = 67/439 (15%), Positives = 124/439 (28%), Gaps = 65/439 (14%)
Query: 20 AHGVLRLILELDGEI-VERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + L+ E V+ HI + RG E+ I + + RL + P++
Sbjct: 15 VEGHGKVTIHLNAENEVDEARLHI-VEFRGFERFIRGRLMWEVPVIVQRLCGICPVSHHL 73
Query: 79 AYALAVEKLLGIE-IPIRGQLIRVLYSEIGRILSHLLNVTTQAMD---VGALTPP----- 129
A A A++ + G++ + + +R L + SH+L+ A G P
Sbjct: 74 AAAKAMDMIAGVDQLTPTAEKMRRLMHYGQVMQSHVLHFFHLAAPDLLFGFGAPAEKRNI 133
Query: 130 -----------LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
R+ E +G ++H PGG+++++P E + D
Sbjct: 134 FEVIKENPELGKRAILMRKYGQEIIEATAGKKVHGTGAIPGGINRNLPIERRDHFLASVD 193
Query: 179 SFPSALNDISDLLTGNR-IFKQRNVNIGTVKLEDAWGWG--------FSGVMIRGSGAAW 229
D L + G+ + G + S
Sbjct: 194 QMIEWSLDAVKLAKDYTLEHEDLVAEFGSFPSNYMSLVRESDGALDLYHGNLRALSSTGD 253
Query: 230 DLRKSQPYECYS-----------ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
+ PY Y + F D + + M + I N
Sbjct: 254 MIFDQVPYTKYHELIVEDVRSWSYMKFPFIKTLGSDAGWYRVGPLARMNTAAFIDTALAN 313
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMK------RSMESLIHHFKLYTEGYHVP---VGEV 329
L K + + A M + L++ L V E
Sbjct: 314 AALKDLKAVTCGTPNNSTLANHWARMIEVLHCVEKIRELLNDPDLQGTDLIVKGDRREEG 373
Query: 330 YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKG--------------H 375
+EAP+G + D ++ C + + + M K
Sbjct: 374 IGVIEAPRGNLIHHYKVDEHDQVTYCNLIVSTTHNNEGMNRAVKDVAVKHLSGKEQITEG 433
Query: 376 QLADVSAILGSLDIVFGEV 394
L V + + D
Sbjct: 434 MLNHVEVAIRAYDPCLSCA 452
>gi|126657774|ref|ZP_01728928.1| Nickel-dependent hydrogenase, large subunit [Cyanothece sp.
CCY0110]
gi|126620991|gb|EAZ91706.1| Nickel-dependent hydrogenase, large subunit [Cyanothece sp.
CCY0110]
Length = 531
Score = 159 bits (403), Expect = 6e-37, Method: Composition-based stats.
Identities = 69/502 (13%), Positives = 120/502 (23%), Gaps = 129/502 (25%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + ++++ V L RG E +++ K + R+ + +
Sbjct: 14 VEGDLDVRVDIEDGQVVNA-WTKAELFRGFEVILKGKDPQAGLIVTPRICGICGASHLTC 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV---------------- 123
+ A++ G E+P L R L + I SH +
Sbjct: 73 ASWALDTAWGTEVPRNAILARNLGQLVETIQSHPRHFYALYAIDLTNKKYKNSPFYEEAC 132
Query: 124 -----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
T K + Y G H++Y PGGV + +
Sbjct: 133 KRFSAFTGTSYELAITTSAKPVELYALFGGQWPHSSYMVPGGVMCAPTLTDITRGWGIME 192
Query: 179 SFPSAL-------------------NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
F + D + L + ++ D + G
Sbjct: 193 YFRTNWLEPVWLGCSLERYEEIQTYEDFLEWLDESPNHANSDLGFYWRMGLDIGLDKYGG 252
Query: 220 VMIRG--------------------------SGAAWDL-------------RKSQPYECY 240
R G +D R++ + Y
Sbjct: 253 GPGRYLTWGYLPHEDKYQRPTVEGRNAAVIMKGGVYDSFTDMHHMVDHTFARENTSHAWY 312
Query: 241 SELDFDIP--------------IGKHGDCYDRYLVRMMEMR-ESVKIIRQCVNRLLGKNK 285
E D+ + + R E + RQ V
Sbjct: 313 EEGTADVHPFDRTTQPKHLNTNDYDGKYSWSTAVSHKDLGRMEVGSLARQLVAGGKHGES 372
Query: 286 VGPV---------SASDPKIVPPKRADMKRS------MESLIHHFKLYTEGYHVP---VG 327
I + A M S +E + FKL Y P G
Sbjct: 373 WQHYDGLILDMFKKMGGASIHLREFARMHESVKLYREVERCLREFKLNDPWYIKPTEKDG 432
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLA 378
+ EA +G ++ K ++ AP ++ +E G +
Sbjct: 433 RGWGGTEASRGALCHWVEV-EKGKIKNYQVIAPTTWNVGPRDGNHTRGPIEEALVGIPIE 491
Query: 379 D------VSAILGSLDIVFGEV 394
D V + S D
Sbjct: 492 DSTNPVEVGHVARSFDSCLVCT 513
>gi|150399443|ref|YP_001323210.1| nickel-dependent hydrogenase large subunit [Methanococcus vannielii
SB]
gi|150012146|gb|ABR54598.1| nickel-dependent hydrogenase large subunit [Methanococcus vannielii
SB]
Length = 390
Score = 159 bits (403), Expect = 6e-37, Method: Composition-based stats.
Identities = 64/387 (16%), Positives = 112/387 (28%), Gaps = 28/387 (7%)
Query: 21 HGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +L+L +D E IV + RG E +++ K R+ + A
Sbjct: 14 EGHAKLVLNVDDEGIVTKAFYPNTTPVRGFETMLQGKPAAFGPIAVMRICGICQATHGIA 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSH----LLNVTTQAMDVGALTPPLWGFEE 135
AVE + EIP G+++R L R+ SH LL + T + +
Sbjct: 74 SCEAVENAIDAEIPEDGKILRELLGLGNRMHSHPLHHLLIADDLLKPEESGTLRVDAIKL 133
Query: 136 ----REKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLL 191
R+ + + G +H GG+ +I + C + N + ++L
Sbjct: 134 IQKMRKAGQLVVDVTGGEGIHPPNLVVGGMRTNISERAKAKLYYACREYEKDCNTMLEVL 193
Query: 192 TGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQP----YECYSELDFDI 247
+ I + D W P Y Y E+
Sbjct: 194 ETLIERYLGEIGIPDLGKHDYPYIATDTTFGNRDAINWKDVTEVPAQRFYAAYPEIAET- 252
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
+ + R + + G + +KRS
Sbjct: 253 ---------ATNQIPFYRGNPAEGGPRARMVKYGNFKSGGGAMDLNLARALENFEAVKRS 303
Query: 308 MESL----IHHFKLYTEGY-HVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+E + I+ T Y EAP+ + I A
Sbjct: 304 LELIDELNINGATKITPDYSKAKESFGIGVHEAPRATNTHMAKMGKDGRIENYNIIAAST 363
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDI 389
+ A+E +G+ I+ + DI
Sbjct: 364 WNFPAVEKAIEGYHHKYAEVIMRAYDI 390
>gi|167723607|ref|ZP_02406843.1| putative hydrogenase subunit [Burkholderia pseudomallei DM98]
Length = 434
Score = 159 bits (403), Expect = 7e-37, Method: Composition-based stats.
Identities = 60/249 (24%), Positives = 93/249 (37%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H + GE V R++ +G HRG E+L E L R+
Sbjct: 182 EIAVGPIHAGVIEPGHFRFSVVGEKVLRLEERLGYAHRGVERLFERADALAGSRLAARIA 241
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + AY +A+E+ L I +P R +R L E R+ +HL ++ D G
Sbjct: 242 GDSTVAFAWAYCMALEQALRIRVPDRALRLRALLLERERVANHLGDLGALGNDAGFAVGL 301
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+E + +R G R PGG+ +DI + I CD + +
Sbjct: 302 AHFSRLKEDWLRMQDRIFGHRYLMDAIVPGGIARDIAADDAAAIVAQCDRIEREVRAMQT 361
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ + R G + + +G G+ R SG D+R Y L D+
Sbjct: 362 IYDDQSGLQDRFAGTGRLDAQAVAHFGVCGLAARASGQPRDVRADHRLAPYDALRIDVSR 421
Query: 250 GKHGDCYDR 258
GD R
Sbjct: 422 DARGDVAAR 430
>gi|241667627|ref|ZP_04755205.1| hypothetical protein FphipA2_02575 [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254876172|ref|ZP_05248882.1| predicted protein [Francisella philomiragia subsp. philomiragia
ATCC 25015]
gi|254842193|gb|EET20607.1| predicted protein [Francisella philomiragia subsp. philomiragia
ATCC 25015]
Length = 431
Score = 158 bits (401), Expect = 9e-37, Method: Composition-based stats.
Identities = 56/431 (12%), Positives = 119/431 (27%), Gaps = 42/431 (9%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
SR I P G L L + +++ + I R EK +E + +
Sbjct: 2 SRETVIEV-PILARVEGEGALDLRIKDGKIDKCELRIYEPPRYFEKFLEGREPNAIIDAV 60
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG- 124
R+ + P+ + ++ A + I +R+L I SH L+V A
Sbjct: 61 ARICGICPLAYQAGFSRAYDSAFDITRTQWIDDMRLLMFLGEWIESHYLHVHLLAAPDFL 120
Query: 125 -----------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDI 173
+ G + + + G +H + GG ++ + V +
Sbjct: 121 GYRSAIEMAKDYPKEVVRGVKLQHLGNDILKLLGGRSVHPNGMKVGGFYKAPLVKEVHAL 180
Query: 174 GCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRK 233
D+ + ++ F +I G + + +
Sbjct: 181 IPKLKDALKEAKDVVEWVSTLSFPDTTIPFKMVSLSHPTEYPVFGDDVITSDGEKFHISE 240
Query: 234 SQPYECYSELDFDIPIGKHGDC--YDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSA 291
+ + K+ + P
Sbjct: 241 YDDHFREFHAPQSTALHSTTVDGQPILLGPLPRINLNFDKLPKHIQEMAHATGVKWPSKN 300
Query: 292 SDPKIVPPKRADMKRSMESLIHHFKLYTEG------YHVPVGEVYAAVEAPKGEFGVYLI 345
+V + ++E + + Y+ Y V + + AVEAP+G ++
Sbjct: 301 MFHSVVARA-IEGYWAIERALQVCENYSYTDTPCVDYTVKAADAWGAVEAPRGIQIDHIK 359
Query: 346 SDGGNKPYRCKIRAPGYAHLQAMEFLCK--------GHQLADV----SAILGSLDIVFGE 393
+ + +I AP +L +E + D+ ++ + D
Sbjct: 360 VNDQGLAEKIRISAPTSQNLPCIEADLRIALENFGLDKPEDDIRLHAEMVIRNYDPCISC 419
Query: 394 --------VDR 396
+DR
Sbjct: 420 SAHFLTLNIDR 430
>gi|182415491|ref|YP_001820557.1| nickel-dependent hydrogenase large subunit [Opitutus terrae PB90-1]
gi|177842705|gb|ACB76957.1| nickel-dependent hydrogenase large subunit [Opitutus terrae PB90-1]
Length = 509
Score = 158 bits (401), Expect = 9e-37, Method: Composition-based stats.
Identities = 65/448 (14%), Positives = 111/448 (24%), Gaps = 74/448 (16%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD VER I L RG E + R+ V P
Sbjct: 35 LEGHGKIDVFLDEAGDVERAYLQIPEL-RGFEVFSLGRPAEDMPQITSRICGVCPTAHHM 93
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A A++ L +E + IR L I H L+V
Sbjct: 94 AATKALDDLYHVEPTPAARKIRELVYNAFMIEDHSLHVYLLGGPDFIVGPQAPAAERNVI 153
Query: 125 ------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQ--------------D 164
L R +L G +H PGGV +
Sbjct: 154 GVINKVGLEVGKRVIATRRRLRELIAYFGGKVIHPVLGLPGGVAKGLKPEDLATFQALAA 213
Query: 165 IPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRG 224
+ + A D L+T + + + ++
Sbjct: 214 DTLDFAQFTLQVFRDLVIANQDYVKLITSDPYTHRTYYMGLVDAANKVAFYDGQIRVVDA 273
Query: 225 SGA-------------------AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMME 265
G W K + F+ +
Sbjct: 274 DGREYAKFPVQRYREFIAEHVEPWSYVKFCYLKPLGWHGFEEGPASSIYAVAPLARLNVA 333
Query: 266 MRESVKIIRQCVNRLLGKNKVGPVSA---SDPKIVPPKRADMKRSMESLIHHFKLYTEGY 322
+ + ++ + PV + V A +R +E + L T+
Sbjct: 334 DGMATPLAQKAYDEYFSALGGKPVHHTLANHWARVVEILAAAERMVELVSDPEILSTDLR 393
Query: 323 HVPVGE---VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ--------AMEFL 371
+P + VEAP+G + +D + + A + L
Sbjct: 394 TIPTAKPTVGIGVVEAPRGTLFHHYETDERGLITLANLIVATQNNAARIAMSVDRAAKSL 453
Query: 372 CKGHQLAD-----VSAILGSLDIVFGEV 394
K Q++D + + D FG
Sbjct: 454 IKQGQVSDGLMNMIEMAFRAYDPCFGCA 481
>gi|172035980|ref|YP_001802481.1| [NiFe] uptake hydrogenase large subunit [Cyanothece sp. ATCC 51142]
gi|171697434|gb|ACB50415.1| [NiFe] uptake hydrogenase large subunit [Cyanothece sp. ATCC 51142]
Length = 539
Score = 158 bits (401), Expect = 9e-37, Method: Composition-based stats.
Identities = 70/502 (13%), Positives = 123/502 (24%), Gaps = 129/502 (25%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + ++++ V L RG E +++ K + R+ + + +
Sbjct: 22 VEGDLDVRVDIEDGQVVNA-WTKAELFRGFEVILKGKDPQAGLIVTPRICGICGASHLTS 80
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV---------------- 123
+ A++ G E+P L R L + I SH +
Sbjct: 81 ASWALDTAWGTEVPRNAILARNLGQLVETIQSHPRHFYALYAIDLTNKKYKNSPFYEEAC 140
Query: 124 -----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
T K + Y G H++Y PGGV + +
Sbjct: 141 KRFSAFTGTSYELAITTSAKPVELYALFGGQWPHSSYMVPGGVMCAPTLTDITRGWGIME 200
Query: 179 SFPSAL-------------------NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
F + D + L + ++ D + G
Sbjct: 201 YFRTNWLEPVWLGCSLERYEEIQTYEDFLEWLDESPNHANSDLGFYWRMGLDIGLDKYGG 260
Query: 220 VMIRG--------------------------SGAAWDL-------------RKSQPYECY 240
R G +D R++ + Y
Sbjct: 261 GPGRYLTWGYLPHEDKYQHPTIEGRNAAVIMKGGVYDSFTDMHHMVDHTFARENTSHAWY 320
Query: 241 SELDFDIP--------------IGKHGDCYDRYLVRMMEMR-ESVKIIRQCVNRLLGKNK 285
E D+ + + + R E + RQ V
Sbjct: 321 EEGTADVHPFDRTTQPKHINTNDYEGKYSWSTAVSHKDLGRMEVGSLARQLVAGGKHGES 380
Query: 286 VGPV---------SASDPKIVPPKRADMKRS------MESLIHHFKLYTEGYHVP---VG 327
P I + A M S +E + FKL Y P G
Sbjct: 381 WQHYDGLILDMFKKMGGPSIHLREFARMHESVKLYREVERCLREFKLNDPWYIKPTEKDG 440
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLA 378
+ EA +G ++ K ++ AP ++ +E G +
Sbjct: 441 RGWGGTEASRGALCHWVEV-EKGKIKNYQVIAPTTWNVGPRDGNHTRGPIEEALVGIPIE 499
Query: 379 D------VSAILGSLDIVFGEV 394
D V + S D
Sbjct: 500 DTSNPVEVGHVARSFDSCLVCT 521
>gi|303243616|ref|ZP_07329958.1| coenzyme F420 hydrogenase, subunit alpha [Methanothermococcus
okinawensis IH1]
gi|302486177|gb|EFL49099.1| coenzyme F420 hydrogenase, subunit alpha [Methanothermococcus
okinawensis IH1]
Length = 385
Score = 158 bits (401), Expect = 1e-36, Method: Composition-based stats.
Identities = 61/381 (16%), Positives = 108/381 (28%), Gaps = 21/381 (5%)
Query: 21 HGVLRLILELDGEIVE-RVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +LILE++ E + + RG E +++ + A R+ + A
Sbjct: 14 EGHAKLILEVNDEGIVSKAYYPNTTPVRGFETMLKGRPASFAPIAVMRICGICQATHGIA 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT-------PPLWG 132
A+E + EIP G+L+R L R+ SH+L+ D
Sbjct: 74 SCEAIENAIDCEIPDDGKLLRELVGLGNRMHSHVLHHLLTVDDFLKPDESDLRVEFIKLV 133
Query: 133 FEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLT 192
R+ + + G +H GG+ +I + C F + + + T
Sbjct: 134 QRMRKAGQLIVDVVGGEGIHPPNIVIGGMKTNITERAKSKLYYACRQFEKDAHTMYETYT 193
Query: 193 GNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKH 252
G + I + + W+ P + Y E +
Sbjct: 194 GLIERYLEEIGIPDLGAHEYPYIASHTTFGNRDAINWNDVTEIPAQRYYENSEIAQTATN 253
Query: 253 GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESL- 311
E R R + G + + R++E L
Sbjct: 254 Q-----IPFYAGVPTEGGPRARMV--RFGDFREGGSAMDINIARAQENFGAVYRALEILD 306
Query: 312 ---IHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM 368
I+ Y G EAP+ K I A + +
Sbjct: 307 ELNINGKSRVIPEYK--DGYGIGVHEAPRAMNTHMAEVGKDGKIKSYNIIAASTWNFPIV 364
Query: 369 EFLCKGHQLADVSAILGSLDI 389
E + + I+ + DI
Sbjct: 365 EKAIEKYPHQYAEVIMRAYDI 385
>gi|167627042|ref|YP_001677542.1| hypothetical protein Fphi_0819 [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|167597043|gb|ABZ87041.1| conserved hypothetical protein [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 431
Score = 158 bits (401), Expect = 1e-36, Method: Composition-based stats.
Identities = 57/431 (13%), Positives = 119/431 (27%), Gaps = 42/431 (9%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
SR I P G L L + +++ + I R EK +E + +
Sbjct: 2 SRETVIEV-PILARVEGEGALDLRIKDGKIDKCELRIYEPPRYFEKFLEGREPNAIIDAV 60
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG- 124
R+ + P+ + ++ A E I +R+L I SH L+V A
Sbjct: 61 ARICGICPLAYQAGFSRAYESAFDITRTQWIDDMRLLMFLGEWIESHYLHVHLLAAPDFL 120
Query: 125 -----------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDI 173
+ G + + + G +H + GG ++ + V +
Sbjct: 121 GYRSAIEMAKDYPKEVVRGVKLQHLGNDILKLLGGRSVHPNGMKVGGFYKAPLVKEVHAL 180
Query: 174 GCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRK 233
D+ + ++ F +I G + + +
Sbjct: 181 IPKLKDALKEAKDVVEWVSTLSFPDTTIPFKMVSLSHPTEYPVFGDDVITSDGEKFHISE 240
Query: 234 SQPYECYSELDFDIPIGKHGDC--YDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSA 291
+ + K+ + P
Sbjct: 241 YDDHFREFHAPQSTALHSTTIDGQPILLGPLPRINLNFDKLPKHIQEMAHATGVKWPSKN 300
Query: 292 SDPKIVPPKRADMKRSMESLIHHFKLYTEG------YHVPVGEVYAAVEAPKGEFGVYLI 345
+V + ++E + + Y+ Y V + + AVEAP+G ++
Sbjct: 301 MFHSVVARA-IEGYWAIERALQVCENYSYTDTPCVDYTVKAADAWGAVEAPRGIQIDHIK 359
Query: 346 SDGGNKPYRCKIRAPGYAHLQAMEFLCK--------GHQLADV----SAILGSLDIVFGE 393
+ + +I AP +L +E + D+ ++ + D
Sbjct: 360 VNDQGLAQKIRISAPTSQNLPCIEADLRIALENFGLDKPEDDIRLHAEMVIRNYDPCISC 419
Query: 394 --------VDR 396
+DR
Sbjct: 420 SAHFLTLNIDR 430
>gi|218247974|ref|YP_002373345.1| nickel-dependent hydrogenase large subunit [Cyanothece sp. PCC
8801]
gi|257060702|ref|YP_003138590.1| nickel-dependent hydrogenase large subunit [Cyanothece sp. PCC
8802]
gi|218168452|gb|ACK67189.1| nickel-dependent hydrogenase large subunit [Cyanothece sp. PCC
8801]
gi|256590868|gb|ACV01755.1| nickel-dependent hydrogenase large subunit [Cyanothece sp. PCC
8802]
Length = 531
Score = 158 bits (401), Expect = 1e-36, Method: Composition-based stats.
Identities = 70/502 (13%), Positives = 122/502 (24%), Gaps = 129/502 (25%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + ++++ V L RG E +++ K + R+ + +
Sbjct: 14 VEGDLDVRVDIEDGQVVNA-WTKAELFRGFEVILKGKDPQAGLIVTPRICGICGASHLTC 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV---------------- 123
+ A++ G E+P L R L + I SH +
Sbjct: 73 ASWALDIAWGTEVPRNAILARNLGQLVETIQSHPRHFYALYAIDLTNKKYKNSPFYEEAC 132
Query: 124 -----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
T K + Y G H++Y PGGV V +
Sbjct: 133 KRFSAFTGTSYELAITTSAKPVELYALFGGQWPHSSYMVPGGVMCAPTLTDVTRGWGIME 192
Query: 179 SFPSAL-------------------NDISDLLTGNRIFKQRNVNIGTVKL-EDAWGWGFS 218
F + D L + ++ +
Sbjct: 193 YFRTNWLEPVWLGCSLERYEEIQTYEDFLTWLDESPNHYNSDLGFYWRMGLDIGLDKYGQ 252
Query: 219 GVM-------------------------IRGSGAAWDL-------------RKSQPYECY 240
G + G +D R++ + Y
Sbjct: 253 GPGKFLTWGYLPHEDKYQKPTLESRNAAVIMKGGVYDSFTDTHQMVDHTFARENTSHAWY 312
Query: 241 SELDFDIP--------------IGKHGDCYDRYLVRMMEMR-ESVKIIRQCVNRLLGKNK 285
E + D+ + + + R E + RQ V
Sbjct: 313 EEGNADVHPFDRTTKPKDINTGDYEGKYSWSTAVSHKDLGRMEVGSLARQLVAGGRHGES 372
Query: 286 VGPV---------SASDPKIVPPKRADMKRS------MESLIHHFKLYTEGYHVP---VG 327
P I + A M S +E + FKL Y P G
Sbjct: 373 WQHYDGLVLDMFKKMGGPSIHLREFARMHESVKLYREVERCLREFKLNDPWYIKPTEKDG 432
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLA 378
+ EA +G ++ G K ++ AP ++ +E G +
Sbjct: 433 RGWGGTEASRGALCHWVEIQG-GKIKNYQVIAPTTWNVGPRDGKDVRGPIEEALVGIPIE 491
Query: 379 D------VSAILGSLDIVFGEV 394
D V + S D
Sbjct: 492 DPTNPVEVGHVARSFDSCLVCT 513
>gi|109692201|gb|ABG37989.1| HupL [Cyanothece sp. ATCC 51142]
Length = 531
Score = 158 bits (401), Expect = 1e-36, Method: Composition-based stats.
Identities = 70/502 (13%), Positives = 123/502 (24%), Gaps = 129/502 (25%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + ++++ V L RG E +++ K + R+ + + +
Sbjct: 14 VEGDLDVRVDIEDGQVVNA-WTKAELFRGFEVILKGKDPQAGLIVTPRICGICGASHLTS 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV---------------- 123
+ A++ G E+P L R L + I SH +
Sbjct: 73 ASWALDTAWGTEVPRNAILARNLGQLVETIQSHPRHFYALYAIDLTNKKYKNSPFYEEAC 132
Query: 124 -----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
T K + Y G H++Y PGGV + +
Sbjct: 133 KRFSAFTGTSYELAITTSAKPVELYALFGGQWPHSSYMVPGGVMCAPTLTDITRGWGIME 192
Query: 179 SFPSAL-------------------NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
F + D + L + ++ D + G
Sbjct: 193 YFRTNWLEPVWLGCSLERYEEIQTYEDFLEWLDESPNHANSDLGFYWRMGLDIGLDKYGG 252
Query: 220 VMIRG--------------------------SGAAWDL-------------RKSQPYECY 240
R G +D R++ + Y
Sbjct: 253 GPGRYLTWGYLPHEDKYQHPTIEGRNAAVIMKGGVYDSFTDMHHMVDHTFARENTSHAWY 312
Query: 241 SELDFDIP--------------IGKHGDCYDRYLVRMMEMR-ESVKIIRQCVNRLLGKNK 285
E D+ + + + R E + RQ V
Sbjct: 313 EEGTADVHPFDRTTQPKHINTNDYEGKYSWSTAVSHKDLGRMEVGSLARQLVAGGKHGES 372
Query: 286 VGPV---------SASDPKIVPPKRADMKRS------MESLIHHFKLYTEGYHVP---VG 327
P I + A M S +E + FKL Y P G
Sbjct: 373 WQHYDGLILDMFKKMGGPSIHLREFARMHESVKLYREVERCLREFKLNDPWYIKPTEKDG 432
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLA 378
+ EA +G ++ K ++ AP ++ +E G +
Sbjct: 433 RGWGGTEASRGALCHWVEV-EKGKIKNYQVIAPTTWNVGPRDGNHTRGPIEEALVGIPIE 491
Query: 379 D------VSAILGSLDIVFGEV 394
D V + S D
Sbjct: 492 DTSNPVEVGHVARSFDSCLVCT 513
>gi|13542287|ref|NP_111975.1| Ni,Fe-hydrogenase III large subunit [Thermoplasma volcanium GSS1]
gi|14325720|dbj|BAB60623.1| formate hydrogenlyase subunit 3 [Thermoplasma volcanium GSS1]
Length = 389
Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats.
Identities = 78/387 (20%), Positives = 138/387 (35%), Gaps = 49/387 (12%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKL-IETKTFLQAVPYFD 66
FT N+GP + GE+++ VD + + R K+ + + A+ +
Sbjct: 45 EFTFNYGPATGGLIESVAFDFHTPGELIKHVDVYPYIKTR---KIKVRGLSPEDALLLVE 101
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
R++ + A+ +AVE L I++P Q R++ E+ R+ S+L V G
Sbjct: 102 RINGFHAASHAVAFEMAVEDALNIDVPEEVQYSRIIMLELERMRSNLEVVKRLCEPAGFG 161
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
P RE + +G R + GG + + +
Sbjct: 162 VPQNQIAYLRENIARIITSFAGHRYFFSSSYVGGCQFNGL-----VLESVIEDVKEEFEG 216
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
I + L ++IF R N G + D G R +G D R + YS+L F
Sbjct: 217 IFNDLLQSKIFLNRLQNNGKISSSDML-----GPAARAAGIEVDARIDEKRLPYSKLGFK 271
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ D + R+ VR E+ S +I + + R G + + ++
Sbjct: 272 PIVFDEPDAFGRFYVRSKEILSSADLISKAI-RFSGNSPPAKIEKTN------------- 317
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
GE A VE+P+G+ Y+ + K +I +P +++
Sbjct: 318 --------------------GEGAARVESPQGDLFYYVKIN-DGKISDVQISSPSLLNIE 356
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGE 393
A + G+ D S I E
Sbjct: 357 AFKKSMIGNIFTDYHFNWESFGIWVSE 383
>gi|94270484|ref|ZP_01291757.1| Nickel-dependent hydrogenase, large subunit [delta proteobacterium
MLMS-1]
gi|93450779|gb|EAT01831.1| Nickel-dependent hydrogenase, large subunit [delta proteobacterium
MLMS-1]
Length = 496
Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats.
Identities = 69/457 (15%), Positives = 122/457 (26%), Gaps = 84/457 (18%)
Query: 20 AHGVLRLILELD--GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQE 77
G ++ + LD GE V I L RG E+ + + DR+ V P
Sbjct: 12 LEGHGKIEIFLDEQGE-VANTYFQIPEL-RGFEQFCVGRQAEEMPVITDRICGVCPEAHH 69
Query: 78 HAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG------------- 124
A A++ L +E P +L+R L I H +
Sbjct: 70 LAATKALDALFAVEPPPAAKLLRELLYMAFFITDHATHFYALGGPDFIVGPDAPPAERNL 129
Query: 125 -------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWC 177
L R + + G +H PGG + I +++
Sbjct: 130 LGVIRKVGLDIGKEVIACRSRNHQVIKMLGGRGIHPVTGLPGGWSRSINRAERDELKDIA 189
Query: 178 DSFPSALNDISDLL----TGNR---------IFKQRNVNIGTVKLEDAWGWGF-----SG 219
++ N FK + IG V ++ + G
Sbjct: 190 RRNLEFARFSLEIFQKVVLANPAYLELITAETFKHQTYYIGLVDEQNRPNFYHGQVRVVG 249
Query: 220 V----MIRGSGAAWDLRKSQPYECYSELDFDI--PIGKHGDC------------YDRYLV 261
++R + + ++ E +S L F +G G R V
Sbjct: 250 PEGRELLRYHPDRYHEQIAERVEPWSYLKFPYLKAVGWRGLVDGPESGVYTSSPLSRLNV 309
Query: 262 RMMEM-RESVKIIRQCVNRLLGKNKVGPVSASDPKIV--PPKRADMK---RSMESLIHHF 315
E+ + L + + G ++ + +M M L+
Sbjct: 310 ADGMATPEAQAEFERFFETLGSRKQAGRYQPVHLRLATHWARLIEMLYAAERMAELLDDP 369
Query: 316 KLYTEGYHVPV----GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFL 371
++ + P G VEAP+G + SD R + + M
Sbjct: 370 EITSPAVRNPPQAVTGRGVGCVEAPRGLLTHHYESDQRGVLTRVNMIVGTTNNYAPMSMS 429
Query: 372 CK---------GHQLAD-----VSAILGSLDIVFGEV 394
K G + + + D
Sbjct: 430 IKQAAQHFIKAGQVVEEGMLNRIEMAFRLYDPCLSCA 466
>gi|213586307|ref|ZP_03368133.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Typhi str. E98-0664]
Length = 175
Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats.
Identities = 72/175 (41%), Positives = 101/175 (57%)
Query: 26 LILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVE 85
+IL+LDGE + P IG HRG EK+ E +++ +PY DR++Y+ E Y LAVE
Sbjct: 1 MILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIEYLGGCVNEMPYVLAVE 60
Query: 86 KLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYER 145
KL GI +P R +IRV+ SE+ RI SHLL ++T DVGA+TP + F +R+K+ E
Sbjct: 61 KLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMTPVFFAFTDRQKIYDLVEA 120
Query: 146 ASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQR 200
+G RMH A+FR GGV D+P + + + P L+ N I K R
Sbjct: 121 ITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLEWMPKRLDSYEKAALRNTILKGR 175
>gi|20089852|ref|NP_615927.1| coenzyme F420 hydrogenase, subunit alpha [Methanosarcina
acetivorans C2A]
gi|19914801|gb|AAM04407.1| coenzyme F420 hydrogenase, subunit alpha [Methanosarcina
acetivorans C2A]
Length = 456
Score = 158 bits (400), Expect = 2e-36, Method: Composition-based stats.
Identities = 75/426 (17%), Positives = 133/426 (31%), Gaps = 55/426 (12%)
Query: 21 HGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +L L+++ IVER D RG EKL KT Q R+ + P+ A
Sbjct: 14 EGHSKLTLKVNDQGIVERGDWLSITPVRGIEKLAIGKTMEQVPKIASRVCGICPIPHTLA 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLN----------------VTTQAMDV 123
A+E +G EIP +L+RV+ R+ SH L+ + + +
Sbjct: 74 SIEAMEASIGCEIPTDVKLLRVILHAANRLHSHALHNILILPDFYIPGTETKINPFSKEQ 133
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS-FPS 182
+ + F RE A G +H + R GG+++++ P + +
Sbjct: 134 PLRSVAVRIFRIREIAQTIIAVAGGEAIHPSNPRVGGMYRNVSPRAKQKMADLAKEGLVL 193
Query: 183 ALNDISDLLTGNRIFKQRN------------VNIGTVKLEDAWGWGFSGVMIRGSGAAWD 230
A + +L R + R N+G G WD
Sbjct: 194 AHEQMEFMLEVIRNMQNRGFTDVAGKEIPIPRNLGYHNQGVMATAPMYGSSSLDEKPMWD 253
Query: 231 LRKSQPYECYSEL---------DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL 281
+ + + D PIG + RM Q V
Sbjct: 254 FARWKDTRPWDWYMGEVTIDLEDPSYPIGGTTKVGTKANPRMEACNTVPTYDGQPVEVGP 313
Query: 282 GK--------NKVGPVSASDPKIVPPKRA--DMKRSMESLIHHFKLYTEGYHVPVGE--- 328
+ G + + + + + +++L K+ + H+P G+
Sbjct: 314 RARLATFKNFTEKGTFAQHIARQLEYPNCFYTILKCLDNLDTSGKVLAD--HIPQGDGSM 371
Query: 329 VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLD 388
+AA EAP+G + ++ P +L G ++ + D
Sbjct: 372 GWAANEAPRGTDVHIARVK-DGRVLWYEMLVPTTWNLPTCSRALTGAPWQIAEMVVRAYD 430
Query: 389 IVFGEV 394
Sbjct: 431 PCVACA 436
>gi|258406378|ref|YP_003199120.1| nickel-dependent hydrogenase large subunit [Desulfohalobium
retbaense DSM 5692]
gi|257798605|gb|ACV69542.1| nickel-dependent hydrogenase large subunit [Desulfohalobium
retbaense DSM 5692]
Length = 486
Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats.
Identities = 59/450 (13%), Positives = 109/450 (24%), Gaps = 78/450 (17%)
Query: 20 AHGVLRLILEL-DGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + L D V+ + L RG E+ + + + ++ V P
Sbjct: 13 LEGHGKIDIFLNDDGTVQDSYFQVVEL-RGFEQFCQGRPVEELPRITPKICGVCPGAHHM 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP---------- 128
A + A + + G+ P + IR L+ SH+L+ A P
Sbjct: 72 ASSKAADAVYGLTPPPAARKIRELFYNAHIAHSHILHFFALAAPDFMPGPEAGPGKRNIL 131
Query: 129 ----------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
+ R +G +H PGG+ + + ++I
Sbjct: 132 GLVDELGKGAVRRVLQNRGYAQKIQGLIAGHPIHPVASLPGGMAGPVSEKTRQEIAGMAS 191
Query: 179 SFPSALNDISDLLTGN---RIFKQRNVNIGTVKLEDAWGWGFS---GVMIRGSGA----- 227
N + R + G + G G + G
Sbjct: 192 EIREFAQFAL-WFFENHILAQDRNRELLTGELFTHRTHYMGLVDSQGRVNFYDGQLRVVT 250
Query: 228 -----------------------AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMM 264
W K PY I G L R+
Sbjct: 251 PEGETMAQFDGSDYLEHLAETVLPWSYMKF-PYLRDKGWHGLIDGADSGVYRVNSLARLN 309
Query: 265 EMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHH-------FKL 317
+ Q + G + + ++ ++ E+L+
Sbjct: 310 VADGMATPLAQEAYETMRAFYGGTPIHNTLAFHWARLVELMQAAEALVDLSQDPEVTDTN 369
Query: 318 YTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGH-- 375
GE VEAP+G + +D + + M K
Sbjct: 370 VRSLPEGRPGEGVGVVEAPRGSLIHHYTTDANGLVKTVNLIVATVQNNAGMGMSVKKAAQ 429
Query: 376 -QLAD----------VSAILGSLDIVFGEV 394
+ D + + D
Sbjct: 430 GLIQDGAPDEAVLDMIEMGYRAYDPCLACA 459
>gi|83643016|ref|YP_431451.1| coenzyme F420-reducing hydrogenase subunit alpha [Hahella
chejuensis KCTC 2396]
gi|83631059|gb|ABC27026.1| Coenzyme F420-reducing hydrogenase, alpha subunit [Hahella
chejuensis KCTC 2396]
Length = 490
Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 57/459 (12%), Positives = 127/459 (27%), Gaps = 69/459 (15%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEI-VERVDPHIGLLHRGTEKLIETKTFL 59
M+ K ++ + P G ++ + LD + V HI + RG E+ I +
Sbjct: 1 MNLDKPKTRIVEIEPVT-RVEGHGKVTIHLDDDNNVAEARLHI-VEFRGFERFIRGRLLW 58
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIE-IPIRGQLIRVLYSEIGRILSHLLNVTT 118
+A RL + P++ A A A++ ++G + +P + +R L + S++L+
Sbjct: 59 EAPVIVQRLCGICPVSHHIAAAKAMDVIVGADALPPTAEKMRRLMHYGQVMQSNVLHFFH 118
Query: 119 QAMDV-------------------GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
+ G R+ +G ++H PG
Sbjct: 119 LSSPDLLFGFDAPRGKRNIFNVIKEFPDLAKQGVLMRKYGQEVILHTAGKKIHGTGAIPG 178
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALNDISDL----------------------LTGNRIF 197
G+++++ + + + + D+ L+ R
Sbjct: 179 GINKNLSLQERDLLLQDIEQMKVWAKGAVDVAKRYTLEHLSQVEQFANFNSSHLSLVRED 238
Query: 198 KQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL--------DFDIPI 249
++ G ++ DA G + + + + +P+ D +
Sbjct: 239 GALDLYHGGLRATDAAGNIIFDHVDYQDFNDYIMEEVRPWSYMKFPFIKSRGALDGWYRV 298
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
G + + K R + + + V + +
Sbjct: 299 GPLSRLNNVAFIDTPLANAEHKEFRALTHNKPNHMSLA-YHWARMIEVLHCVEKIHELLL 357
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
E +EAP+G + D ++ C + + M
Sbjct: 358 DPDLQGADLRVSGERRE-EGVGVIEAPRGSLFHHYKVDKNDQITYCNLIVSTTHNNNGMN 416
Query: 370 FLCKG--------------HQLADVSAILGSLDIVFGEV 394
L V + + D
Sbjct: 417 RAVTDVAKKYLGGKKRITEGMLNHVEVAVRAYDPCLSCA 455
>gi|163782602|ref|ZP_02177599.1| hydrogenase large subunit [Hydrogenivirga sp. 128-5-R1-1]
gi|159882175|gb|EDP75682.1| hydrogenase large subunit [Hydrogenivirga sp. 128-5-R1-1]
Length = 448
Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 67/441 (15%), Positives = 123/441 (27%), Gaps = 79/441 (17%)
Query: 29 ELDGEIVERVDPHIGLL---------HRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
++GEI ++ G + +RG E+L++ K FL A+ R+ + A
Sbjct: 10 RVEGEIELKLLWKSGRVDDAFLCAMDYRGFERLLKGKPFLDALVIVPRVCGICGHAHLMA 69
Query: 80 YALAVEKLLG-----IEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA--------- 125
A+E +++ + IR L + +HL +
Sbjct: 70 CVKAIEDAYSSEGYPVQLSDKALEIRKLTLMCEMLQNHLRWFYMYLLPDIVKLEPSIAEL 129
Query: 126 -----LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+ + G H +Y PGGV D + + +
Sbjct: 130 YEPLRGRAWVEALRASNMPIKVIALFGGQWPHTSYAVPGGVVCDPTGYELSQAELFLERL 189
Query: 181 PSALNDIS--------------DLLTGNRIFKQRNVNIGTVK--------LEDAWGWGFS 218
+ + L R R + + G
Sbjct: 190 KTFFESWLLGMPLEEYLSLKGRNYLKDIRGDLGRFTEVAIEHNLHEEGRSYDRFITGGEL 249
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHG--DCYDRYLVRMMEMRESVKIIRQC 276
+ R + + SE D ++G + + E+ + RQ
Sbjct: 250 KPLFRSGFFTREGVSPFDADKVSENDEFTFFRRNGSAYTWSKAARYSGLPCETGPLARQL 309
Query: 277 V--NRLLGKNKVGPVSASDPKIVPPKRADMKRSMES--LIHHFKLYTEGYHVP------- 325
V NR++G S+ ++V ++ E+ +H KL ++ P
Sbjct: 310 VSGNRVIGSLFRRFGSSVLVRVVARMDEAVRLFTEAQRTLHRIKLDEPSWNRPSVDEKVF 369
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA--------MEFLCKGHQL 377
G VEA +G L G + I P +L E G
Sbjct: 370 SGRGVGVVEAARGTLIHELEI-EGGRIRSYNIITPTVWNLGPRDAEHLGVAERALLGL-- 426
Query: 378 AD----VSAILGSLDIVFGEV 394
D ++ S D+
Sbjct: 427 -DSELKAEIVVRSFDVCSVCT 446
>gi|262275751|ref|ZP_06053560.1| NAD-reducing hydrogenase subunit HoxH [Grimontia hollisae CIP
101886]
gi|262219559|gb|EEY70875.1| NAD-reducing hydrogenase subunit HoxH [Grimontia hollisae CIP
101886]
Length = 488
Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 62/453 (13%), Positives = 125/453 (27%), Gaps = 81/453 (17%)
Query: 20 AHGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ L+LD V + + RG E+ I+ + +A R+ + ++
Sbjct: 13 IEGHGKVTLQLDDNNRVTDARLQV-IEFRGFERFIQGHPYWEAPMLLQRICGICFVSHHL 71
Query: 79 AYALAVEKL------LGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------- 124
A A++ + GI++ + IR L ++ SH+
Sbjct: 72 CGAKALDDMVGVGLKDGIQMLPTPEKIRRLGHYAQQLQSHVTAYFYLIAPEMVFGIESAP 131
Query: 125 -----------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDI 173
+ R+ G RMH PGGV+ ++ +
Sbjct: 132 EKRNILGLAEANPELVKRVIQLRKWGQELIVSVLGKRMHGISSVPGGVNNNLSIAERDKF 191
Query: 174 GC------WCDSFPSALNDISDLLTG-NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSG 226
D D +L + + N G V D +G + G
Sbjct: 192 LKGNDDLLSIDEVIDYAQDALNLFYDYHEKHRDEIDNFGVVNALDMCLVDENGDVDYYHG 251
Query: 227 AAWDLRKSQ------PYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVK--------- 271
+ +++ Y Y + F YL + SV+
Sbjct: 252 KIRIVDENKQIVLETDYHDYLDH-FAEATEAWSYMKFPYLKALGREAGSVRVGPLARLNV 310
Query: 272 -------IIRQCVNRL----LGKNKVGPVSASDPKIVP--PKRADMKRSME--SLIHHFK 316
+ ++ + R GK + + + + +K + L
Sbjct: 311 TRRYNTPLAQEALERFHDYTKGKANNMTLHTNWARAIEILHSAELIKELLNDPDLQGQNL 370
Query: 317 LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME------- 369
+ T GE VEAP+G + +D + + + +
Sbjct: 371 IITPEKSAWTGEGVGVVEAPRGTLLHHYRADEAGNMTFANLIVSTTQNNKVINRTVQSVA 430
Query: 370 --------FLCKGHQLADVSAILGSLDIVFGEV 394
+ +G A + + + D
Sbjct: 431 QDWISGKAEITEGMMNA-IEVGIRAYDPCLSCA 462
>gi|307352751|ref|YP_003893802.1| coenzyme F420 hydrogenase subunit alpha [Methanoplanus petrolearius
DSM 11571]
gi|307155984|gb|ADN35364.1| coenzyme F420 hydrogenase, subunit alpha [Methanoplanus
petrolearius DSM 11571]
Length = 456
Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 72/425 (16%), Positives = 127/425 (29%), Gaps = 52/425 (12%)
Query: 21 HGVLRLILEL-DGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +L+L++ D I+ER D RG EKL KT QA R+ + P+ A
Sbjct: 14 EGHTKLVLKVNDDGIIERGDWLSITPVRGIEKLAIGKTMHQAPKISSRVCGICPIAHTLA 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLL----------------NVTTQAMDV 123
A+E +G EIP L+RV+ R+ SH L ++ +
Sbjct: 74 GIEAMEGSIGCEIPDDAYLLRVILQCANRLHSHALHNILTLPDMYLPGTDVHINPFTAEE 133
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS---- 179
+ L + RE E G +H + R GG++++I P
Sbjct: 134 PVRSVALRIQKLREIGQTIGEIVGGEPIHPSNPRIGGMYKNISPRAKAKCYDLLKEGKDL 193
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTV------KLEDAWGWGFSGVM-----IRGSGAA 228
+ + +L +V G G+ + +
Sbjct: 194 AREHMEFMITVLKDWDARPTASVAAGYEVEKTEKFGFHDQGYMAVDPLYASTNLDAEPKW 253
Query: 229 WDLRKSQ--PYECYSE------LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRL 280
+ R ++ P++ Y D + P + +M V
Sbjct: 254 YPERWTEVRPWDWYMGEQEITLDDPNYPNHATTPAGGKAWPQMEACTAVPMYDGAPVEVG 313
Query: 281 LGKNKVGPVSASDPKIVPPKRADMKRSME----SLIHHFKLYTEGY----HVPVGE---V 329
+ + + A M+ ++ L T G +P G+
Sbjct: 314 PRARLAIFRNYDRKGAMGLQIARQMEYMDCFYSAIEALDALDTSGSVIADEIPQGDGSLG 373
Query: 330 YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDI 389
+AA EAP+G + + P + +G I+ + D
Sbjct: 374 WAANEAPRGADVHLAKVK-DGRVQWYSLLVPTTWNFPVCSRALEGAPWQLAEVIVRAYDP 432
Query: 390 VFGEV 394
Sbjct: 433 CVSCA 437
>gi|67925904|ref|ZP_00519188.1| Nickel-dependent hydrogenase, large subunit [Crocosphaera watsonii
WH 8501]
gi|67852253|gb|EAM47728.1| Nickel-dependent hydrogenase, large subunit [Crocosphaera watsonii
WH 8501]
Length = 531
Score = 157 bits (398), Expect = 3e-36, Method: Composition-based stats.
Identities = 68/502 (13%), Positives = 121/502 (24%), Gaps = 129/502 (25%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + ++++ V L RG E +++ K + R+ + +
Sbjct: 14 VEGDLDVRVDIEDGQVVNA-WTKAELFRGFEVILKGKDPQAGLIVTPRICGICGASHLTC 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV---------------- 123
+ A++ E+P L R L + + SH +
Sbjct: 73 ASWALDTAWETEVPRNAILARNLGQLVETVQSHPRHFYALYAIDLTNKKYKNSPFYEEAC 132
Query: 124 -----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
T K + Y G H++Y PGGV + +
Sbjct: 133 KRFGAFTGTSYELAITTSAKPVELYALFGGQWPHSSYMVPGGVMCAPTLTDITRGWGIME 192
Query: 179 SFPSAL-------------------NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
F + D + L + ++ D + G
Sbjct: 193 YFRTNWLEPVWLGCSLERYEEIQTYEDFLEWLDESPAHANSDLGFYWRMGLDIGLDKYGG 252
Query: 220 VMIRG--------------------------SGAAWDL-------------RKSQPYECY 240
R G +D R++ + Y
Sbjct: 253 GPGRYLTWGYLPHEDRYQKPTVEGRNAAVIMKGGVYDSFTDQHHMVDHTFTRENTSHAWY 312
Query: 241 SELDFDIP--------------IGKHGDCYDRYLVRMMEMR-ESVKIIRQCVNRLLGKNK 285
E D+ + + + R E + RQ V
Sbjct: 313 EEGTADVHPFDRTTQPKHINTNDYEGKYSWATAVSHKDLGRMEVGSLARQLVAGGKHGES 372
Query: 286 VGPV---------SASDPKIVPPKRADMKRS------MESLIHHFKLYTEGYHVP---VG 327
P I + A M S +E + FKL Y P G
Sbjct: 373 WQHYDGLILDMFKKMGGPSIHLREFARMHESVKLYREVERCLREFKLNDPWYIKPTEKDG 432
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLA 378
+ EA +G ++ K ++ AP ++ +E G +
Sbjct: 433 RGWGGTEASRGALCHWVEV-EKGKIKNYQVIAPTTWNVGPRDGTHTRGPIEEALVGIPIE 491
Query: 379 D------VSAILGSLDIVFGEV 394
D V + S D
Sbjct: 492 DSTNPVEVGHVARSFDSCLVCT 513
>gi|94266348|ref|ZP_01290049.1| Nickel-dependent hydrogenase, large subunit [delta proteobacterium
MLMS-1]
gi|93453062|gb|EAT03544.1| Nickel-dependent hydrogenase, large subunit [delta proteobacterium
MLMS-1]
Length = 496
Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats.
Identities = 68/457 (14%), Positives = 122/457 (26%), Gaps = 84/457 (18%)
Query: 20 AHGVLRLILELD--GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQE 77
G ++ + LD GE V I L RG E+ + + DR+ V P
Sbjct: 12 LEGHGKIEIFLDEQGE-VANTYFQIPEL-RGFEQFCVGRQAEEMPVITDRICGVCPEAHH 69
Query: 78 HAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG------------- 124
A A++ L +E P +L+R + I H +
Sbjct: 70 LAATKALDALFAVEPPPAAKLLREVLYMAFFITDHATHFYALGGPDFIVGPDAPPAERNL 129
Query: 125 -------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWC 177
L R + + G +H PGG + I +++
Sbjct: 130 LGVIRKVGLDIGKEVIACRSRNHQVIKLLGGRGIHPVAGLPGGWSRSINRAERDELKEVA 189
Query: 178 DSFPSALNDISDLL----TGNR---------IFKQRNVNIGTVKLEDAWGWGF-----SG 219
D+ N FK + IG V ++ + G
Sbjct: 190 ARNLEFARFSLDIFQKVVLANPAYLELITAETFKHQTYYIGLVDEQNRPNFYHGQVRVVG 249
Query: 220 V----MIRGSGAAWDLRKSQPYECYSELDFDI--PIGKHGDC-------------YDRYL 260
++R + + ++ E +S L F +G G +
Sbjct: 250 PEGRELLRYHPDQYHEQIAERVEPWSYLKFPYLKAVGWRGLVDGPASGVYTSSPLSRLNV 309
Query: 261 VRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIV--PPKRADMK---RSMESLIHHF 315
M E+ + L + + G ++ + +M M L+
Sbjct: 310 ADAMATPEAQAEFERFFETLGSRKQAGRYQPVHLRLATHWARLIEMLYAAERMAELLDDP 369
Query: 316 KLYTEGYHVPV----GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFL 371
++ + P G VEAP+G + SD R + + M
Sbjct: 370 EITSPAVRNPPQAITGRGVGCVEAPRGLLTHHYESDQRGVLTRVNMIVGTTNNYAPMSMS 429
Query: 372 CK---------GHQLAD-----VSAILGSLDIVFGEV 394
K G + + + D
Sbjct: 430 IKQAAQHFIKAGQVVEEGMLNRIEMAFRLYDPCLSCA 466
>gi|220931232|ref|YP_002508140.1| nickel-dependent hydrogenase large subunit [Halothermothrix orenii
H 168]
gi|219992542|gb|ACL69145.1| nickel-dependent hydrogenase large subunit [Halothermothrix orenii
H 168]
Length = 470
Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats.
Identities = 51/441 (11%), Positives = 106/441 (24%), Gaps = 71/441 (16%)
Query: 22 GVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYA 81
G+L + + +D + G + RG E ++ + AV R+ + + +
Sbjct: 15 GLLSVEIVVDRGKIVNARTR-GTMFRGYEWIMRGRKVTDAVYMTQRICGICSLAHGAVGS 73
Query: 82 LAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP------------- 128
+++L G I Q +R + + +H+ + + P
Sbjct: 74 YLLDELYGNIISENAQYLRNIMFAADFLQNHIRHFYFFGLPDFVKMPEKPPFLGQDLNDL 133
Query: 129 -------------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGC 175
+ ++ G + F GGV + +
Sbjct: 134 RLNREDNRRLVDNYYKAVKAAQESHQLLALFGGKIPNQHSFVHGGVTVAPTADKINQAKA 193
Query: 176 WCDSFPSAL------------NDISDLL----TGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
+S + D T R+ G + W G
Sbjct: 194 LIESIQQFVQGCMIPDTELISRAYRDYFQIGVTPLRLISFGLFPFGPQNDDYLWPPGVII 253
Query: 220 VMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHG----------DCYDRYLVRMMEMRES 269
+ + PY Y D + Y + ++ + E+
Sbjct: 254 NNEFELPQVEFIEEQVPYSYYEANDEGENVFNQYPEPAPFKPEAYSYIKTVLYKGQHFET 313
Query: 270 VKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD-MKRSMESLIHHFKLYTEGYHVPVGE 328
R + + K A ++ + L +
Sbjct: 314 GPYARGVIRGDYRGRASTMDRIVARSLEALKLAGFIREWLTRLEPGPPPLNQNEEPVKDR 373
Query: 329 VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA---------MEFLCKGHQLAD 379
A A +G I +G + P + +E G ++
Sbjct: 374 AVATTGAMRGALLHSAIIEGEE-VKSYNVITPTTWNFSPRDKNGNPGPVERALIGTEIPG 432
Query: 380 -------VSAILGSLDIVFGE 393
V I+ S D
Sbjct: 433 GAMLETIVGRIIRSFDPCISC 453
>gi|102040|pir||C25877 hypothetical protein 1 - Crithidia fasciculata mitochondrion
Length = 344
Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats.
Identities = 100/330 (30%), Positives = 159/330 (48%), Gaps = 12/330 (3%)
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
RLDYV+ + EH +L E +L + IR +R+L E R + LL + MD+G+L
Sbjct: 27 RLDYVSVVCNEHLLSLCFEYMLRCCLAIRCAFMRLLMCEFTRCFNGLLCCSCMVMDIGSL 86
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
+P LW FEER+KLM F++ G RMH A+ G+ D ++ + C S L+
Sbjct: 87 SPMLWSFEERDKLMTFFDLCCGCRMHLAFMCLLGLLDDFVFGFIDFLLMLCISCLFVLDL 146
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
L GNR+ R + + D SG + R G WD+R YE Y L FD
Sbjct: 147 YDLLFIGNRLLYLRLAGLAFFDVYDLCFNSISGCLSRSLGMVWDVRLYNCYELYFMLVFD 206
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
GD +DR +R+ +MR S+ + +QC + +
Sbjct: 207 YCFCYLGDAFDRLFLRLFDMRMSILLCKQCFFVGFFVFGFVCLFDYMY---------VDV 257
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
++E++I F Y+ + G +A+VE PKGE+ ++L R + R + H+
Sbjct: 258 TIETIISLF--YSLWCCILPGCSFASVEHPKGEYSIFLCFLY-GFISRLRPRCADFIHIC 314
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ + +G L D+ A++G++D+VFG VDR
Sbjct: 315 LLDVMMRGFMLHDLVAVIGNIDVVFGSVDR 344
>gi|296271175|ref|YP_003653807.1| cytochrome-c3 hydrogenase [Thermobispora bispora DSM 43833]
gi|296093962|gb|ADG89914.1| Cytochrome-c3 hydrogenase [Thermobispora bispora DSM 43833]
Length = 535
Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats.
Identities = 64/503 (12%), Positives = 130/503 (25%), Gaps = 130/503 (25%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + + L+ +V + RG E ++ K + R+ + + +
Sbjct: 14 VEGDLDVRVTLEDGVVTSA-WTEASMFRGFEIILRGKDPQAGLIVCPRICGICGGSHLYK 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV---------------- 123
A A++ +P LIR + + S
Sbjct: 73 SAYALDVAWRTHLPHNATLIRNICQACETLQSIPRYFYALFAPDLTHKNYANSPLYDEAV 132
Query: 124 -----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQ--------------- 163
T G +K + Y G H+++ PGGV
Sbjct: 133 RRFAPYVGTSYGPGVVLSQKPVEVYAIFGGQWPHSSFMVPGGVMCAPTLADVTRSIAILE 192
Query: 164 DIPPELVEDIGCWCDSFPS----ALNDISDLLTGNRIFK-----------------QRNV 202
+E C +D+ + N +
Sbjct: 193 HWKDNWLEKQWLGCSIDRWLENRTWDDVLAWVEENESHYNSDCGFFIRYAVDIGLDKYGA 252
Query: 203 NIGTVK----------LEDAWGWGFSGVMIRGSGAAWDLRKS------------------ 234
+G E+ G + +I SG + +
Sbjct: 253 GVGNYIATGTYFEPSLYENPTIEGRNAALIARSGVYANGQWYEFDQARIREDVTHSFYEG 312
Query: 235 ----QPYECYSEL-DFDIPIGKHGDCYDRYLVRM-----MEMRESVKIIRQCVNRLLGKN 284
P+E ++ D ++ + + + E+ + RQ +
Sbjct: 313 TGALHPFEGETKPIDPEVGRKQGKYSWAKSPRYDVPGLGHIPLEAGPLARQMIAGGPDAA 372
Query: 285 KVGP--------VSASDPKIVPPKRADMKR----------SMESLIHHFKLYTEGYHVPV 326
V + P ++ + A M ++ L H YT+ P
Sbjct: 373 PHQDSDPLFVDIVKSIGPSVLVRQLARMHEAAKYYKWVRSWLDQLDLHDSFYTKPTEYPE 432
Query: 327 GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQL 377
G+ + A EA +G +++ K ++ P + L +E G ++
Sbjct: 433 GKGFGATEAARGALADWIVI-ENGKIANYQVITPTAWNIGPRDREEALGPIERAMVGARV 491
Query: 378 AD------VSAILGSLDIVFGEV 394
D ++ + S D
Sbjct: 492 TDPEDPVELAHVARSFDSCLVCT 514
>gi|324533721|gb|ADY49325.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 [Ascaris
suum]
Length = 166
Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats.
Identities = 87/181 (48%), Positives = 111/181 (61%), Gaps = 29/181 (16%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ +K + +NFGPQHPAAHGVLRL+L+L+GE++ + PHIGLLHRGTEKL+E KT+ Q
Sbjct: 15 LREKALENMILNFGPQHPAAHGVLRLVLKLEGEVIIKAMPHIGLLHRGTEKLMEHKTYTQ 74
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+P+ DRLDYV + E A+A +H VTT A
Sbjct: 75 CMPFMDRLDYVTMLCSEQAFA-----------------------------NHAFGVTTHA 105
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+D+GA+TP W FEEREKL F ER SG+RMH YFRPGGV D+P L++DI W
Sbjct: 106 LDIGAMTPLFWLFEEREKLFEFNERVSGARMHINYFRPGGVSYDLPLGLLDDIYDWGGEV 165
Query: 181 P 181
P
Sbjct: 166 P 166
>gi|148263194|ref|YP_001229900.1| nickel-dependent hydrogenase, large subunit [Geobacter
uraniireducens Rf4]
gi|146396694|gb|ABQ25327.1| nickel-dependent hydrogenase, large subunit [Geobacter
uraniireducens Rf4]
Length = 425
Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats.
Identities = 66/407 (16%), Positives = 124/407 (30%), Gaps = 32/407 (7%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G + +DG+ ERV+ + R E L+ K+F + R+ +
Sbjct: 13 VEGHGIARVYMDGKRAERVELALTEPPRLFEALLLGKSFEEVPEIICRICSLCSTIHRVT 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG------------ALT 127
LAVE LGI++ +L R L G I SH L++ A+ A
Sbjct: 73 SLLAVENALGIDVSEETRLYRELIVNGGHIQSHALHLFCLALPDYYNAASFADLATHAPE 132
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
G + + E G +H PGG+ + + + ++ ++ +
Sbjct: 133 LLKLGLRIKGVGNLIQETVGGRLIHPVNIVPGGMGKRVNHAGLRELQVALETILPDTIEA 192
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGS-GAAWD---LRKSQPYECYSEL 243
+L + + ++ G + S G ++ R++ P +
Sbjct: 193 CNLFASFAVPGPPLPRSIFMAVQGETSSPLFGDRLDLSNGRSFMASNYREALPEKVIGHS 252
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+ L R+ + Q K + ++
Sbjct: 253 YAKQSRFEGEAVIVGALARLNVGMGLTTMANQAFLDAREKLIDTDIRGNNLAQAIELILA 312
Query: 304 MKRSMESLIHHFKLYTEGYH-----VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
++ S+E + T+ G AA EAP+G D I
Sbjct: 313 VECSLEIIATLLSFETKPDRPVSIAPRKGSGSAATEAPRGVLIHSYSFDNRGFCTAADII 372
Query: 359 APGYAHLQAME----FLCKGHQLAD-------VSAILGSLDIVFGEV 394
P + AME L + + AD + ++ + D
Sbjct: 373 TPTAINQAAMERDLLALAREMEGADEAELKLKLEMLVRAYDPCISCA 419
>gi|98152881|ref|YP_611130.1| nickel-dependent hydrogenase, large subunit [Sphingopyxis
alaskensis RB2256]
gi|95105278|gb|ABF54901.1| nickel-dependent hydrogenase, large subunit [Sphingopyxis
alaskensis RB2256]
Length = 547
Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats.
Identities = 71/501 (14%), Positives = 127/501 (25%), Gaps = 128/501 (25%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + ++++ IV + RG E +++ K + R + +
Sbjct: 31 VEGDLDVRVDIENGIVTNA-WTQAEMFRGFEVILKNKDPQAGLVVTPRACGICGASHLSC 89
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV---------------- 123
A A++ G +P L R L + I S + M
Sbjct: 90 AAWALDTAWGTTVPRNAILARNLGQIVETIQSIPRHHYGLFMIDYTNQNYAKSKFYEEAV 149
Query: 124 -----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
T G + + Y G H+++ PGGV V +
Sbjct: 150 KRYAPFTGTSYEAGVTISGRPVEIYALLGGQWPHSSFMVPGGVMCAPTLTDVTRAWSILE 209
Query: 179 SFPSAL-------------------NDISDLLTGNRIF-----------------KQRNV 202
F +D+ L +
Sbjct: 210 HFRRNWIEPLFLGCSMERYEEIRTYDDLMAWLDEKPEHANSDLGMFIRMSLDIGLDKYGK 269
Query: 203 NIGTVKLEDAWGW----------GFSGVMIRGSGAAW------------DLRKSQPYECY 240
G G +G +I SG + R+ + Y
Sbjct: 270 GHGKFISWGYLPHEDRYNNPTIEGRNGAVIMKSGVFDGASDTFKLMDQGNTREDMQHAWY 329
Query: 241 SELDFDIPIGKH-------------GDCYDRYLVRMMEMR-ESVKIIRQCVNRL------ 280
E D P + + + R E+ + RQ +
Sbjct: 330 DEGDGLHPFDRTTNPVAKNDIDTDGKYSWSTAVRHSDNGRLEAGPLARQLIAGGDHGESW 389
Query: 281 ---------LGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP---VGE 328
+ + G + + R E ++ F+L E Y P G+
Sbjct: 390 QHSDGLVLDMYRKLGGASIYLRHFARLHELCKLYRESERILREFRLNDEWYIKPTERDGQ 449
Query: 329 VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLAD 379
+ A EA +G ++ K + +I AP + L +E G +A+
Sbjct: 450 GWGATEAARGALCHWIDVR-DGKIHNYQIIAPTTWNVGPRASNGELGPIEEALIGTPIAN 508
Query: 380 ------VSAILGSLDIVFGEV 394
V + S D
Sbjct: 509 TSDPVEVGHVCRSYDSCLVCT 529
>gi|126180114|ref|YP_001048079.1| nickel-dependent hydrogenase, large subunit [Methanoculleus
marisnigri JR1]
gi|125862908|gb|ABN58097.1| coenzyme F420-reducing hydrogenase, alpha subunit [Methanoculleus
marisnigri JR1]
Length = 455
Score = 156 bits (394), Expect = 6e-36, Method: Composition-based stats.
Identities = 71/425 (16%), Positives = 133/425 (31%), Gaps = 53/425 (12%)
Query: 21 HGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +L+L+++ E IVER D RG EKL KT Q R+ + P+ A
Sbjct: 14 EGHSKLVLKVNDEGIVERGDWLSITPVRGVEKLAIGKTMEQVPKIASRVCGICPIAHTLA 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLN----------------VTTQAMDV 123
A+E +G EIP +L+R + R+ SH ++ + +
Sbjct: 74 GIEAMEASIGCEIPEDAKLLRYILQCANRMHSHAIHNILSLPDMYIPGTDVKINPFTKEE 133
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
+ L RE E G +H + R GG++++I P +
Sbjct: 134 PVRSVALRIQRLREIGQTIGEIVGGEAIHPSNPRVGGMYKNITPRAKAKLYDLAKESRVL 193
Query: 184 LNDISDLL---TGNRIFKQRNVNIGTVKL------EDAWGWGFSGVMIRGS-----GAAW 229
+ + + N + + G G+ + + S +
Sbjct: 194 AQEQMEFMIAVFRNYQNRDWSEVGGVEVPITKDLGYHNQGYMATAPVYGSSSLDETPMWF 253
Query: 230 DLR--KSQPYECY------SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN--- 278
R + +P++ Y E D + PIG ++ +M Q V
Sbjct: 254 PDRFTEVRPWDWYMGEVEIDEADPNYPIGGTTPVGNKAWPQMEACTGVPLYDGQPVEVGP 313
Query: 279 -----RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTE-GYHVPVGE---V 329
+ ++ G + + + +++L + +P G+
Sbjct: 314 RARLVQFKNYDEKGAMGLQIARQMEFP-ETAYGIIDALDALDTSGSVLADEIPQGDGSFG 372
Query: 330 YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDI 389
+AA EAP+G + + P + G I+ + D
Sbjct: 373 WAANEAPRGTDVHMAKVK-DGRVEYFGMLVPTTWNFPTCSRALTGAPWRLAEVIMRAYDP 431
Query: 390 VFGEV 394
Sbjct: 432 CVSCA 436
>gi|218438789|ref|YP_002377118.1| nickel-dependent hydrogenase large subunit [Cyanothece sp. PCC
7424]
gi|218171517|gb|ACK70250.1| nickel-dependent hydrogenase large subunit [Cyanothece sp. PCC
7424]
Length = 531
Score = 156 bits (394), Expect = 7e-36, Method: Composition-based stats.
Identities = 72/502 (14%), Positives = 122/502 (24%), Gaps = 129/502 (25%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + ++++ V H L RG E ++ K + R+ + +
Sbjct: 14 VEGDLDVRVDIEDGYVVNAWTHA-ELFRGFEVILRGKDSQAGLIVTPRVCGICGASHLTC 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV---------------- 123
+ A++ G E+P L R L + I S
Sbjct: 73 ASWALDTAWGTEVPRNAILARNLGQLVETIQSQPRYFYGLFAIDLTNKKYKDSPFYEEAC 132
Query: 124 -----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
G K + Y G H+++ PGGV V +
Sbjct: 133 RRFAPFTGKSYEVGVTVSAKPVEIYALFGGQWPHSSFMVPGGVMCAPTLTDVTRAWSILE 192
Query: 179 SFPSAL-------------------NDISDLLTGNRIF-----------------KQRNV 202
F + +D L N + +
Sbjct: 193 YFRTNWLEPMWLGCSLERYEEIQTYDDFMAWLDENPAHANSDLGFYWRMGLDIGLDKYGI 252
Query: 203 NIGTVKLEDAWGW----------GFSGVMIRGSGAAWDL------------RKSQPYECY 240
G G + +I SG R++ + Y
Sbjct: 253 GCGRYTTWGYLPHEDRYQKPTIEGRNAAVIMKSGVYDSFTDTHTLMEHGFARENTTHSWY 312
Query: 241 SELDFDIP--------------IGKHGDCYDRYLVRMMEMR-ESVKIIRQCVNRLLGKN- 284
E D+ + + + R E + RQ V
Sbjct: 313 EEGTKDVHPFDRYTVPTQNNVKDFDNAYSWASAVSHKDLGRMEVGPLARQLVAGGNHGES 372
Query: 285 ---KVGPVSASDPK-----IVPPKRADMKRSM------ESLIHHFKLYTEGYHVP---VG 327
G + K I + A M ++ E + F+L Y P G
Sbjct: 373 WQHHDGFILDMFKKMGGASIHLRQIARMHEAVKLYREVERCLREFQLKDPWYIKPTEKNG 432
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLA 378
+ A EA +G ++ K +I AP + +E G +
Sbjct: 433 RGWGATEASRGALCHWIEV-ESGKIKNYQIVAPTTWNVGPRDGEGIQGPIEQALIGTPVQ 491
Query: 379 D------VSAILGSLDIVFGEV 394
D V + S D
Sbjct: 492 DPSDPVEVGHVARSFDSCLVCT 513
>gi|297619516|ref|YP_003707621.1| coenzyme F420 hydrogenase subunit alpha [Methanococcus voltae A3]
gi|297378493|gb|ADI36648.1| coenzyme F420 hydrogenase, subunit alpha [Methanococcus voltae A3]
Length = 411
Score = 156 bits (394), Expect = 7e-36, Method: Composition-based stats.
Identities = 65/388 (16%), Positives = 118/388 (30%), Gaps = 23/388 (5%)
Query: 21 HGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +L+L +D + IV + RG E +++ K R+ + A
Sbjct: 14 EGHAKLVLNVDDDGIVTKAFYPNTTPVRGFETMLQGKPAAFGPIAVMRICGICQATHGIA 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSH----LLNVTTQAMDVGALTPPLWGFEE 135
A+E +G EIP G ++R L R+ SH LL V A T + G +
Sbjct: 74 SCEAIENAIGAEIPQDGMILRELLGLGNRMHSHPLHHLLIVDDLLKPEEADTLRIDGIKL 133
Query: 136 ----REKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD-- 189
R++ + + G +H GG+ +I + C + + D
Sbjct: 134 IQKMRKEGQLIVDIVGGEGIHPPNLLVGGMRNNISERAKSKLYYACREYQKDARQMYDVI 193
Query: 190 -LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
+LT + + ++G L G +Q Y Y+
Sbjct: 194 EMLTERYLDEIGIPDLGRHDLPYLATDTTFGNRDNLKLDDIAELTAQNY--YANYPDIAQ 251
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
+ + + ES R + G V + +RS+
Sbjct: 252 TATNQ-----IPLYLGTPAESGPRARMV--KFGSFRTDGGVMDVNLARALENLGAAERSL 304
Query: 309 ESLIHHFKLYTEGYHV--PVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+ L + G EAP+ + +I A ++
Sbjct: 305 QLLDNLDINGATKITPEFKDGFGVGIHEAPRATNTHMAEMGADGRIKNYRIIAASTWNMP 364
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEV 394
+E +G+ I+ + DI
Sbjct: 365 VVEKAIEGYHHKYAEVIMRAYDIUASCA 392
>gi|113476882|ref|YP_722943.1| hydrogen:quinone oxidoreductase [Trichodesmium erythraeum IMS101]
gi|110167930|gb|ABG52470.1| Hydrogen:quinone oxidoreductase [Trichodesmium erythraeum IMS101]
Length = 534
Score = 156 bits (394), Expect = 7e-36, Method: Composition-based stats.
Identities = 71/502 (14%), Positives = 122/502 (24%), Gaps = 137/502 (27%)
Query: 29 ELDGEIVERVDPHIGL---------LHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
++G++ RVD G + RG E +++ K + R+ + +
Sbjct: 16 RVEGDLDVRVDIQDGYVSNAWTQAQMFRGFEVILKGKDPKAGLIVTPRICGICGASHLTC 75
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV---------------- 123
+ A++ E+P L R L + + SH
Sbjct: 76 ASWALDTAWQTEVPRNAILARNLGQLVETLQSHPRYFYGLYAIDLTNKKYQNSPFYEEAC 135
Query: 124 -----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
T G K + Y G H+++ PGGV V +
Sbjct: 136 KRFTAFTGTSYEPGITVAAKPVEIYALFGGQWPHSSFMVPGGVMCAPTLTDVTRAWGMLE 195
Query: 179 SFPSAL-------------------NDISDLLTGNRIF-----------------KQRNV 202
F + D + L N +
Sbjct: 196 YFRTNWLEPLWLGCSIERFEKIQTYEDFLEWLDENPHHASSDLGFYWRMGLNIGLDKIGA 255
Query: 203 NIGTVKLEDAWGW----------GFSGVMIRGSGA------------AWDLRKSQPYECY 240
+G G + MI SG R++ + Y
Sbjct: 256 GVGKYMSWGYLPHEDKYQHPTIEGRNAAMIMKSGVYDSTTDIHQLMEHTFTRENTSHAWY 315
Query: 241 SELDFDIPIGKH--------------GDCYDRYLVRMMEMR-ESVKIIRQCVNRLLGKNK 285
+E D +I + + R E + R+ +
Sbjct: 316 NEGDENIHPFDRNTAPIRNNDLDFDGAYSWSTAVSHKDLGRMEVGALARELIAGGDHGES 375
Query: 286 ---------------VGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP---VG 327
GP + + R E + F L Y P G
Sbjct: 376 WQHKDGLVLDMFKKMGGPSVHLRVFARMHELTKLYRQTEHCLREFNLRDPWYIKPQEKDG 435
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLA 378
+ A A +G ++ G K +I AP ++ +E G +A
Sbjct: 436 RGWGATNASRGSLCHWVEI-EGGKINNYQIIAPTTWNVGPRDGQGVRGPIEEALVGIPIA 494
Query: 379 D------VSAILGSLDIVFGEV 394
D V + S D
Sbjct: 495 DVNDPVEVGHVARSFDSCLVCT 516
>gi|256811182|ref|YP_003128551.1| coenzyme F420 hydrogenase, subunit alpha [Methanocaldococcus
fervens AG86]
gi|256794382|gb|ACV25051.1| coenzyme F420 hydrogenase, subunit alpha [Methanocaldococcus
fervens AG86]
Length = 410
Score = 156 bits (394), Expect = 8e-36, Method: Composition-based stats.
Identities = 56/384 (14%), Positives = 107/384 (27%), Gaps = 17/384 (4%)
Query: 21 HGVLRLILELDGEIVERVDPHIGLLH-RGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +LILE+D E + ++ RG E +++ K A R+ + A
Sbjct: 14 EGHAKLILEVDEEGIVNKAYYLNTTPVRGFETMLKGKPAEFAPIAVMRICGICQTTHGIA 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGF------ 133
A+E + E+P G L+R L R+ SH L+ D
Sbjct: 74 SCEAIENAIDCEVPDDGLLLRELVGIGNRLHSHPLHHLLTIDDFLKPEEAEKKIELIKLI 133
Query: 134 -EEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLT 192
R+ + + G +H GG+ +I + + +I ++ T
Sbjct: 134 QRMRKVGQLVVDVVGGEGIHPPNIVIGGMRTNITERAKSKLYYALRQYEKDAYEIYEVYT 193
Query: 193 GNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKH 252
+ ++ +G L + G A + +
Sbjct: 194 E--LIERYLEEVGIPDLGAHEYPYIATHTTYGDRYAINWDDVTEIPAQRYYKDEEARQT- 250
Query: 253 GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLI 312
+ + E R + + G + + R++E L
Sbjct: 251 --STVQIPLYCGVPAEGGPRARMV--KFGNFREGGSALDINIARAQENLGAVYRALEILD 306
Query: 313 HHFK--LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
G EAP+ + +I A + +E
Sbjct: 307 ELNLNGKTRAEVEYKDGFGIGVHEAPRATNTHMAEVGKDGRIKSYRIIAASTWNFPIVEK 366
Query: 371 LCKGHQLADVSAILGSLDIVFGEV 394
+G+ I+ + DI
Sbjct: 367 AIEGYPQQYAEVIMRAYDIUASCA 390
>gi|146303703|ref|YP_001191019.1| nickel-dependent hydrogenase, large subunit [Metallosphaera sedula
DSM 5348]
gi|145701953|gb|ABP95095.1| nickel-dependent hydrogenase, large subunit [Metallosphaera sedula
DSM 5348]
Length = 513
Score = 155 bits (393), Expect = 9e-36, Method: Composition-based stats.
Identities = 58/489 (11%), Positives = 125/489 (25%), Gaps = 118/489 (24%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L L + +G+ V + P + L RG E +++ K + ++ R+ + + +
Sbjct: 12 VEGDLDLKVVFEGKKVVKAFP-MSRLFRGIEIILKGKFPMDSLVITPRICGICGGSHLLS 70
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV---------------- 123
A A+E G +P +R + + + + + +
Sbjct: 71 AAKALEMAYGASVPPNAVRLRNVMTLAEMGQNDVRHTYLMFLIDTVNLKYEKMGFYRDIV 130
Query: 124 -----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRP-------------------- 158
++ Y G H + P
Sbjct: 131 LRWAPYLGQSYKQAVAWSKRYTEIYAIFGGQWPHGSAMVPGGVTTDPLSNDIIKAKSILA 190
Query: 159 ----------------------------GGVHQDIPPELVEDIGCWCDSFPSA------- 183
+D P + I +
Sbjct: 191 SITAEFLEKVILGGPLDQFLQVKSKRDLDQWAKDYPNGDISKIWNYGLEMKWDKIGSGSQ 250
Query: 184 ---------LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKS 234
L + D + + R + ++ + ++ S + + +
Sbjct: 251 YLMSYGHVTLPEHYDPASHVEKKRFR-EGLLDLRTREIHQIKEENIVEFVSHSFYSYEQG 309
Query: 235 -----QPYECYSELDFDIPIGKHGDCYD--RYLVRMMEMRESVKIIRQCVNRLL------ 281
PY + GK+ L E + V
Sbjct: 310 DKVGLHPYNGETTPLPPESKGKYTFTKAFRYKLGGKYVAPEVGALAMMVVAGDPLMTDLV 369
Query: 282 GKNKVGPVSASDPKIVPPKR--ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGE 339
+ ++ +IV R M+ +ES + Y + G Y VEA +G
Sbjct: 370 YRIGTSVLAREIARIVRLARIHEIMREELESYEYDEITYIKPEEKLSGRGYGLVEASRGS 429
Query: 340 FGVYLISDGGNKPYRCKIRAPGYAHLQA---------MEFLCKGHQLAD------VSAIL 384
G +L+ K ++ P ++ + +G ++ + V+ I+
Sbjct: 430 LGHWLVI-EEGKIKNYQVVTPTQINMGPEDPFGNPSHLSIALQGTEVENPNNPIEVAHIV 488
Query: 385 GSLDIVFGE 393
S D
Sbjct: 489 RSHDACMVC 497
>gi|288817773|ref|YP_003432120.1| Ni,Fe-hydrogenase large subunit [Hydrogenobacter thermophilus TK-6]
gi|152061252|dbj|BAF73672.1| Ni,Fe-hydrogenase large subunit [Hydrogenobacter thermophilus]
gi|288787172|dbj|BAI68919.1| Ni,Fe-hydrogenase large subunit [Hydrogenobacter thermophilus TK-6]
gi|308751371|gb|ADO44854.1| Cytochrome-c3 hydrogenase [Hydrogenobacter thermophilus TK-6]
Length = 544
Score = 155 bits (393), Expect = 1e-35, Method: Composition-based stats.
Identities = 62/517 (11%), Positives = 132/517 (25%), Gaps = 142/517 (27%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + ++ V V ++ RG E ++ K L + R+ + + +
Sbjct: 15 LEGDVRADVFVEDGHVADVQVEA-VMFRGFEIILRGKDPLAGLIVTPRVCGICGGSHLYK 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV---------------- 123
A++ E+P IR + + S
Sbjct: 74 ACQALDTAWRTEVPPNAWHIRNIAQACETLQSVPRWYYAIFAIDFVNKNYAKSKLYDEVV 133
Query: 124 -----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
T G E + Y G H+++ PGGV + + +
Sbjct: 134 RRWAPFVGTSYKIGLEVSALPVKVYAMFGGQWPHSSFMVPGGVMCAPQLDHITRAYALLE 193
Query: 179 SFP-------------------SALNDISDLLTGNRIFKQRNVNIGT-VKLEDAWGWGFS 218
+ +D+ L N + + + LE+ +
Sbjct: 194 RYRTEWLEKVWLGCSVDRWLENKTWDDVLKWLDENESHRNSDCGLFIRFCLENGLDKYGA 253
Query: 219 GVMIRGSGAAWDLRKSQP----------------------YECYSEL------------- 243
GV + + + P Y + ++
Sbjct: 254 GVNAFLACGTYIDPEFYPVSTIEGRNQALQSPSGVVYNGKYYIFDQMNVREDITHSYFEG 313
Query: 244 --------------DFDIPIGKHGDCYDRYLVRM----MEMRESVKIIRQ---------- 275
D ++ + + + + E+ + RQ
Sbjct: 314 SSMLHPWEGETVPLDPEVAKKQGKYSWAKSPRYLIDGKPVPLEAGPLARQVVAGYEEAKS 373
Query: 276 ------CVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLI-----------HHFKLY 318
C+ + VS P ++ A M +++ + Y
Sbjct: 374 ACSASGCIEHAIDPLFKNIVSKIGPSVMVRVLARMHEAVKYYKWVKTWLAKVNFDDDRFY 433
Query: 319 TEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAME 369
+ +P G+ Y EA +G +++ K +I P ++ +E
Sbjct: 434 KKPKELPEGKGYGGTEAARGALQDWIVI-ENGKIKNYQIVTPTAWNIGPRDSKGQMGPIE 492
Query: 370 FLCKGHQLAD------VSAILGSLDIVFGEV----DR 396
G + + V+ + S D DR
Sbjct: 493 KAIVGAPIKNPEDPIEVAHVARSFDSCLVCTVHVYDR 529
>gi|313683175|ref|YP_004060913.1| nickel-dependent hydrogenase large subunit [Sulfuricurvum kujiense
DSM 16994]
gi|313156035|gb|ADR34713.1| nickel-dependent hydrogenase large subunit [Sulfuricurvum kujiense
DSM 16994]
Length = 431
Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats.
Identities = 65/434 (14%), Positives = 118/434 (27%), Gaps = 66/434 (15%)
Query: 20 AHGVLRLILELDGEIVER---------VDPHIGLLH-RGTEKLIETKTFLQAVPYFDRLD 69
H LI ++GE V + I LH RG E ++E + L ++ R+
Sbjct: 3 THE---LIERIEGEAVLDFQTDKSGRVQEAAIRFLHFRGIEAILEGRNALDSLVIAPRVC 59
Query: 70 YVAPMNQEHAYALAVEKLLG-----IEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
+ + A +E L + + + +R + I +H+ + +
Sbjct: 60 GICGHSHLIAAVRMLESLYENAGYPVTLTPKAHALREITLSCELIQNHIKWLYLVMLHES 119
Query: 125 A------LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
L ++ SG H++Y PGGV D V
Sbjct: 120 GKLLGEEPPVALKALYVTSQVNQLCALFSGQWPHSSYALPGGVTCDPTHIEVMQALKILS 179
Query: 179 SFPSALNDIS-----DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAW---- 229
+ D +L + G + SG +
Sbjct: 180 EVERFIEDEVLGCGTELFESHMKNDTLGTLKGDFGTLLRNFERLE---LLDSGKSHGRFL 236
Query: 230 ---DLRKSQPYECYSELDFDIPIG-------KHGDCYDRYLVRMMEMRESVKIIRQCVNR 279
+ R + ++ S D+ G Y + + E E + R V
Sbjct: 237 VLGNERIAMAFDVRSNAQPDLVSEDASQTFENGGKTYAKNALYNGEFYEGGPLARALVQE 296
Query: 280 LLGKNKVGPVSASDPKIVPPKRADMKRSM----ESLIHHFKLYTEGYHVPV------GEV 329
G + + + R + + L+ L + P G
Sbjct: 297 RAGISDLYRIHGDSAVTRLCARVEEMVLLCAQVRQLLTSLDLSQRSFIPPASIETISGSG 356
Query: 330 YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL--------QAMEFLCKGHQ-LADV 380
VEAP+G + I P +L + G + +A
Sbjct: 357 IGIVEAPRGSLIHKARI-EKGRIMEYSIITPTQWNLGNGPSDNPGTAQKAMIGVESIAKA 415
Query: 381 SAILGSLDIVFGEV 394
S I + D+
Sbjct: 416 SLIFRTFDVCSVCT 429
>gi|295697090|ref|YP_003590328.1| nickel-dependent hydrogenase large subunit [Bacillus tusciae DSM
2912]
gi|295412692|gb|ADG07184.1| nickel-dependent hydrogenase large subunit [Bacillus tusciae DSM
2912]
Length = 546
Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats.
Identities = 61/503 (12%), Positives = 123/503 (24%), Gaps = 130/503 (25%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + + ++ +V + RG E +++ K + R+ + +
Sbjct: 11 VEGDLDVRVAIEDGVVVDA-WTEATMFRGFEIILKGKDPQAGLIVTPRICGICGGSHLTK 69
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD----------------- 122
A++ E+P L+R + + S
Sbjct: 70 AVYALDTAWHTEVPPNATLVRNIAQASETLQSIPRWFYALFAIGLTHRKYASSKLYDEVV 129
Query: 123 ----VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
T G K + Y G H+++ PGGV V +
Sbjct: 130 RRWAPFEGTSYEAGVAVSSKPVEIYAIFGGQWPHSSFMVPGGVMCGPTLSDVTRSISILE 189
Query: 179 SFP-------------------SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
+ D+ + L + ++ + D G
Sbjct: 190 YYREAWLEKVWLGCSLERWLENKTWKDVLNWLDEKPEHRDSDLGLFIRYSMDVGLDKIGG 249
Query: 220 VMIR--GSGAAWDLRKSQP----------------YECYSELDFD------IPIGKH--- 252
R +G+ ++ K + Y+ + DFD
Sbjct: 250 GPGRYLAAGSFFNPEKYRYPSIEGRNDALIARSGVYDGENFHDFDQNRIREDHTHSFFRG 309
Query: 253 -----------------------GDCYDRYLVRM-----MEMRESVKIIRQCVNRLLG-- 282
+ + E+ + RQ V G
Sbjct: 310 GASLHPFEGLTEPLDPVAAQSEGKYTWAKAPRYDLPGVGEVSLEAGPLARQVVAGRPGAQ 369
Query: 283 ------KNKVGPVSASDPKIVPPKRADMKR----------SMESLIHHFKLYTEGYHVPV 326
+ V P ++ A M + + + K Y + +P
Sbjct: 370 SWQDYDPLFLDIVKEIGPSVMVRVLARMHESAKYYLRVRDWLRQIDLNEKFYIKPQELPE 429
Query: 327 GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQL 377
G + A EA +G ++ K ++ P ++ +E G +
Sbjct: 430 GRGFGATEAARGALADWIEIK-DGKIENYQVITPTAWNIGPRDRHGNRGPIETAMIGTPV 488
Query: 378 AD------VSAILGSLDIVFGEV 394
D ++ I S D
Sbjct: 489 NDPDDPVELANIAQSYDSCLVCT 511
>gi|261403393|ref|YP_003247617.1| coenzyme F420 hydrogenase, subunit alpha [Methanocaldococcus
vulcanius M7]
gi|261370386|gb|ACX73135.1| coenzyme F420 hydrogenase, subunit alpha [Methanocaldococcus
vulcanius M7]
Length = 410
Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats.
Identities = 62/384 (16%), Positives = 106/384 (27%), Gaps = 17/384 (4%)
Query: 21 HGVLRLILELDGEIVE-RVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +LILE+D E + + RG E +++ K A R+ + A
Sbjct: 14 EGHAKLILEVDDEGIVSKAYYLNTTPVRGFETMLKGKPAEFAPIAVMRICGICQTTHGIA 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGF------ 133
A+E + E+P G L+R L R+ SH L+ D
Sbjct: 74 SCEAIENAIDCEVPEDGLLLRELVGIGNRLHSHPLHHLLTVDDFLKPDETELRIELIKLI 133
Query: 134 -EEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLT 192
R+ + + G +H GG+ +I I + N++ + T
Sbjct: 134 QRMRKVGQLIVDIVGGEGIHPPNIVIGGMRTNITERAKSKIYYALRQYEKDANELYEKYT 193
Query: 193 GNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKH 252
+ ++ IG L + G A + D +
Sbjct: 194 --WLIERFLDEIGIPDLGAHEYPYIASHTTYGDRYAINWNDVTEIPAQRYYDDEEAKHTT 251
Query: 253 GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLI 312
+ + E R R + G + R+ E L
Sbjct: 252 T---VQIPLYGGVPAEGGPRARMV--RFGSFREGGSAMDINIARAQENLGATYRAFEILD 306
Query: 313 HHFKLYTEGYHV--PVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
V G EAP+ K +I A + +E
Sbjct: 307 ELDLNGKTRAEVVYKDGFGIGVHEAPRATNTHMAEVGKDGKIKSYRIIAASTWNFPIVEK 366
Query: 371 LCKGHQLADVSAILGSLDIVFGEV 394
+G+ I+ + DI
Sbjct: 367 AIEGYPQQYAEVIMRAYDIUASCA 390
>gi|289192426|ref|YP_003458367.1| coenzyme F420 hydrogenase, subunit alpha [Methanocaldococcus sp.
FS406-22]
gi|288938876|gb|ADC69631.1| coenzyme F420 hydrogenase, subunit alpha [Methanocaldococcus sp.
FS406-22]
Length = 410
Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats.
Identities = 58/387 (14%), Positives = 107/387 (27%), Gaps = 23/387 (5%)
Query: 21 HGVLRLILELDGEIVERVDPHIGLLH-RGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +LILE+D E + ++ RG E +++ K A R+ + A
Sbjct: 14 EGHAKLILEVDDEGIVNKAYYLNTTPVRGFETMLKGKPAEFAPIAVMRICGICQTTHGIA 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGF------ 133
A+E + EIP G L+R L R+ SH L+ D
Sbjct: 74 SCEAIENAIDCEIPDDGLLLRELVGIGNRLHSHPLHHLLTIDDFLKPDETELKIELIKLI 133
Query: 134 -EEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLT 192
R+ + + G +H GG+ +I + + ++ + T
Sbjct: 134 QRMRKVGQLVVDIVGGEGIHPPNIVIGGMRTNITERAKSKLYYALRQYEKDAYELYEKYT 193
Query: 193 GNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC---YSELDFDIPI 249
+ ++ IG L + G A + Y + +
Sbjct: 194 E--LIERYLEEIGIPDLGAHEYPYIATHTTYGDRYAINWNDVTEIPAQRYYEDEEAKQTT 251
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
Y R + + + G + + R++E
Sbjct: 252 TIQIPLYAGVPAEGG--------PRARMVKFGNFREGGSALDINIARAQENLGAVYRALE 303
Query: 310 SLIHHFKLYTEGYHV--PVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
L G EAP+ + +I A +
Sbjct: 304 ILDELNLNGKTRVEPEYKDGVGIGVHEAPRATNTHMAEVGKDGRIKSYRIIAASTWNFPI 363
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEV 394
+E +G+ I+ + DI
Sbjct: 364 VEKAIEGYPQQYAEVIMRAYDIUASCA 390
>gi|49022387|dbj|BAD23962.1| NADH dehydrogenase [Ginkgo biloba]
Length = 174
Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats.
Identities = 96/173 (55%), Positives = 124/173 (71%)
Query: 18 PAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQE 77
PAAHGVLR +L+++ E+V+ ++ HIG LHRGTEKL+E K ++QA+PYFDR DYV+ M QE
Sbjct: 1 PAAHGVLRSLLKINREVVDCIESHIGSLHRGTEKLMEYKIYIQALPYFDRSDYVSMMAQE 60
Query: 78 HAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEERE 137
HAY AVEKL E+P+R Q IRVL+ EI RI +H L TT A DVGALTP LW EERE
Sbjct: 61 HAYPSAVEKLPNREVPLRAQYIRVLFREITRISNHSLASTTHATDVGALTPSLWASEERE 120
Query: 138 KLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
KL+ +ER G+RMHA+ RPGGV QD+P L DI + F +++ ++
Sbjct: 121 KLLESHERVPGARMHASSIRPGGVAQDLPLGLCRDIYSFAQQFAPRIDESEEM 173
>gi|291519867|emb|CBK75088.1| Ni,Fe-hydrogenase III large subunit [Butyrivibrio fibrisolvens
16/4]
Length = 199
Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats.
Identities = 59/232 (25%), Positives = 106/232 (45%), Gaps = 33/232 (14%)
Query: 165 IPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRG 224
+P ++++D + + +++D+ + K R V+IG + EDA G G M+R
Sbjct: 1 MPNDMLKDFVRQLNDMEKEIREMTDIFLTDYTVKSRLVDIGIITGEDAIRRGAVGPMMRA 60
Query: 225 SGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKN 284
SG D+RK+ Y Y++LDF++ D Y R VR+ E+ +S+ IIRQCV ++
Sbjct: 61 SGINVDMRKNG-YAAYNDLDFEVITSNKCDSYARCEVRIGEIFQSIDIIRQCVEKIPDTE 119
Query: 285 KVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
T+ +P GE + VE P+GE ++
Sbjct: 120 IN--------------------------------TKVTGMPNGESFIRVEQPRGEAFYHV 147
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++G R ++R P +A++ A+ +G Q DV ++ ++D +R
Sbjct: 148 RANGTKFLDRFRVRTPTFANIPALTQTLQGCQYGDVPLLVLTIDPCISCTER 199
>gi|75910791|ref|YP_325087.1| nickel-dependent hydrogenase, large subunit [Anabaena variabilis
ATCC 29413]
gi|12666972|emb|CAA73659.2| [NiFe] uptake hydrogenase, large subunit [Anabaena variabilis ATCC
29413]
gi|75704516|gb|ABA24192.1| Nickel-dependent hydrogenase, large subunit [Anabaena variabilis
ATCC 29413]
Length = 531
Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats.
Identities = 69/502 (13%), Positives = 121/502 (24%), Gaps = 129/502 (25%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + +E++ V H L RG E ++ K + R+ + + +
Sbjct: 14 VEGDLDVRVEIEDGQVVNAWTHA-ELFRGFEIILRGKDPQAGLIVTPRICGICGASHLTS 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV---------------- 123
+ A++ +P L R L + I S
Sbjct: 73 ASWALDTAWNTTVPRNAILARNLGQIVETIQSIPRYFYGLFAIDLTNKKYRSSRFYDEAV 132
Query: 124 -----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
G K + Y G H++Y PGGV + +
Sbjct: 133 RRFAAFTGKSYELGVTISSKPVEIYALFGGQWPHSSYMVPGGVMCAPTLTDITRAWAILE 192
Query: 179 SFPSAL-------------------NDISDLLTGNRIFK-----------------QRNV 202
F + +D D L + + +
Sbjct: 193 YFRTNWLEPVWLGCSLERYEEIQTYDDFMDWLEADIKHRESDLGFYWRMGLDIGLDRYGA 252
Query: 203 NIGTVKLEDAWGW----------GFSGVMIRGSGA------------AWDLRKSQPYECY 240
+G G + MI SG R++ + Y
Sbjct: 253 GVGKYVSWGYLPHEDKYQKPTIEGRNAAMIMKSGVYDSFSDTHTLMDHTFARENTTHSWY 312
Query: 241 SELDFDIP--------------IGKHGDCYDRYLVRMMEMR-ESVKIIRQCVNRLLGKNK 285
E + D+ K+ + ++ R E + RQ V
Sbjct: 313 DEGNADVHPFDRTTKPTQKNTKDFKNAYSWSTAVLHQDFGRLEVGPLARQLVAGGQHGES 372
Query: 286 ---------------VGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV---G 327
G + + R E + F L Y P G
Sbjct: 373 WQHYDGFILDAFQKMGGASIHLRQLARVHEIVKLYRQAERCLREFVLNDPWYIKPKEKDG 432
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLA 378
+ A EA +G ++ G K ++ A ++ +E G +
Sbjct: 433 RGWGATEASRGSLCHWIDI-EGGKIKNYQVIAATTWNVGPRDSEGVRGPIEEALIGTPIE 491
Query: 379 D------VSAILGSLDIVFGEV 394
D V + S D
Sbjct: 492 DSRDPVEVGHVARSFDSCLVCT 513
>gi|320352159|ref|YP_004193498.1| F420-non-reducing hydrogenase subunit A [Desulfobulbus propionicus
DSM 2032]
gi|320120661|gb|ADW16207.1| F420-non-reducing hydrogenase subunit A [Desulfobulbus propionicus
DSM 2032]
Length = 488
Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats.
Identities = 59/450 (13%), Positives = 112/450 (24%), Gaps = 77/450 (17%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD V+ + RG EK ++ + + V
Sbjct: 12 LEGHGKIAIFLDDAGNVDDAFFQT-VEFRGFEKFLQGMPMEEVPRTVSTVCGVCRGVHFT 70
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP--------- 129
A A + + G+ P G+ +R L+ + H + + + + P
Sbjct: 71 ASMKASDGVFGVTPPPAGRKLRELFFNAHYVEDHSVILYALGLPDFVVGPEANPAVRNVV 130
Query: 130 -----------LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
R + +E G H PGG + + E + I W
Sbjct: 131 GLINAVGAETGREVLRRRGLAVKIFELLGGKPNHPVAAIPGGWSKQLSEEERKQIEEWSQ 190
Query: 179 SF----PSALNDISDLLTGNRIFK------------------QRNVNIGTVKLEDAWGWG 216
L D++ N + N NI
Sbjct: 191 ELVGLGELTLKVFEDVVLKNDKYMELVTGDMYKVEVGYMGSVDENDNITYYDGTQKIIDS 250
Query: 217 FSGVMIRGSGAAWDLRKSQPYECYSELDFDIP------------IGKHGDCYDRYLVRMM 264
+ +G + S+ + ++ L F G + +
Sbjct: 251 AGNPVGSFNGKEYLDFISERVQPWTYLKFPYQKKIGPWKGIVEGPGTNIYAVGPLARMNI 310
Query: 265 EMRESVKIIRQCVNRLLGKNKVGPVS----ASDPKIVPPKRADMK---RSMESLIHHFKL 317
+ +Q + PV + + A K S + I
Sbjct: 311 VGGMDTPLAQQHFEKFHATFGARPVHNVLAYHWARAIELLNAAEKCLQLSRDPEITSKDT 370
Query: 318 YTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKG--- 374
+T+ P GE +EAP+G + +D + + + K
Sbjct: 371 WTKPTSCP-GEGVGIIEAPRGTLIHHYTTDERGIVTNANLIVATTHNNAPINLAVKKAAK 429
Query: 375 ----------HQLADVSAILGSLDIVFGEV 394
L V D+
Sbjct: 430 HFIKNGDVSPAMLNYVEMAFRPYDLCLACA 459
>gi|17228172|ref|NP_484720.1| [NiFe] uptake hydrogenase large subunit [Nostoc sp. PCC 7120]
gi|17130022|dbj|BAB72634.1| [NiFe] uptake hydrogenase large subunit [Nostoc sp. PCC 7120]
Length = 531
Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 69/502 (13%), Positives = 121/502 (24%), Gaps = 129/502 (25%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + +E++ V H L RG E ++ K + R+ + + +
Sbjct: 14 VEGDLDVRVEIEDGRVVNAWTHA-ELFRGFEIILRGKDPQAGLIVTPRICGICGASHLTS 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV---------------- 123
+ A++ +P L R L + I S
Sbjct: 73 ASWALDTAWNTTVPRNAILARNLGQIVETIQSIPRYFYGLFAIDLTNKKYRSSRFYDEAV 132
Query: 124 -----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
G K + Y G H++Y PGGV + +
Sbjct: 133 RRFSAYTGKSYELGVTISSKPVEIYALFGGQWPHSSYMVPGGVMCAPTLTDITRAWAILE 192
Query: 179 SFPSAL-------------------NDISDLLTGNRIFK-----------------QRNV 202
F + +D D L + + +
Sbjct: 193 YFRTNWLEPVWLGCSLERYEEIQTYDDFMDWLEADIKHRESDLGFYWRMGLDIGLDRYGA 252
Query: 203 NIGTVKLEDAWGW----------GFSGVMIRGSGA------------AWDLRKSQPYECY 240
+G G + MI SG R++ + Y
Sbjct: 253 GVGKYVSWGYLPHEDKYQKPTIEGRNAAMIMKSGVYDSFENTHTLMDHTFARENTTHAWY 312
Query: 241 SELDFDIP--------------IGKHGDCYDRYLVRMMEMR-ESVKIIRQCVNRLLGKNK 285
E + D+ K+ + ++ R E + RQ V
Sbjct: 313 DEGNADVHPFDRTTKPTQKNTKDFKNAYSWSTAVLHQDFGRLEVGPLARQLVAGGQHGES 372
Query: 286 ---------------VGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV---G 327
G + + R E + F L Y P G
Sbjct: 373 WQHYDGFILDAFQKMGGASIHLRQLARVHEIVKLYRQAERCLREFVLNDPWYIKPKEKDG 432
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLA 378
+ A EA +G ++ G K ++ A ++ +E G +
Sbjct: 433 RGWGATEASRGSLCHWIDI-EGGKIKNYQVIAATTWNVGPRDSEGVRGPIEEALIGTPIE 491
Query: 379 D------VSAILGSLDIVFGEV 394
D V + S D
Sbjct: 492 DSRDPVEVGHVARSFDSCLVCT 513
>gi|331700072|ref|YP_004336311.1| cytochrome-c3 hydrogenase [Pseudonocardia dioxanivorans CB1190]
gi|326954761|gb|AEA28458.1| Cytochrome-c3 hydrogenase [Pseudonocardia dioxanivorans CB1190]
Length = 535
Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 56/516 (10%), Positives = 121/516 (23%), Gaps = 134/516 (25%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
F G G L + + ++ +V + RG E +++ K +
Sbjct: 5 DLFVSPLG----RVEGDLDVRVTIEDGVVTSAWTEAA-MFRGFEIILQGKDPQAGLIVCP 59
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV--- 123
R+ + + + A A++ +P L+R + + S
Sbjct: 60 RICGICGGSHLYKSAYALDVAWKTHMPPNATLVRNICQAAETLQSIPRYFYALFAIDLTN 119
Query: 124 ------------------GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRP------- 158
T G K + Y G H+++ P
Sbjct: 120 KNYAKAPNYAEAVRRFAPYVGTSYQPGVVLSNKPVEVYAIFGGQWPHSSFMVPGGVMCAP 179
Query: 159 ------------GGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFK-------- 198
+ + D+ + N
Sbjct: 180 TLSDVTRSISILEHWKDNWLEKQWLGCSVDRWLENKTWEDVLAWVEENESQYNSDCGFFI 239
Query: 199 ---------QRNVNIGTVKLEDAWG-------WGFSGVMI--------RGSGAAWDL--- 231
+ +G + G G +D
Sbjct: 240 RYALEIGLDKYGAGVGNYLAMGTYFEPSLYENPTIDGRNAALVGRSGIYAKGQWFDFDQS 299
Query: 232 --RKSQPYECYSE-------------LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQC 276
R+ + Y +D ++ + + + + + +
Sbjct: 300 RVREDVTHSFYEGTGALHPFDGETRPIDPEVGRKQGKYSWAKSPRYDVPGLGHIPLEAGP 359
Query: 277 VNRLLGKNKVGPVSASD-------------PKIVPPKRADMKR----------SMESLIH 313
+ R + G S D P ++ + A M ++ L
Sbjct: 360 LARRMAAGAPGAASHQDADPLFVDILSKIGPSVLTRQLARMHEGPKYYKWVRSWLDQLDL 419
Query: 314 HFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL-------- 365
H YT+ G + A EA +G +++ +K ++ P ++
Sbjct: 420 HESFYTKPTEYAEGRGFGATEAARGSLADWVVI-EDSKIKNYQVITPTAWNIGPRDGAAI 478
Query: 366 -QAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
+E G +AD + + S D
Sbjct: 479 AGPIERALVGSPIADQEDPVELGHVARSFDSCLVCT 514
>gi|156743733|ref|YP_001433862.1| nickel-dependent hydrogenase large subunit [Roseiflexus
castenholzii DSM 13941]
gi|156235061|gb|ABU59844.1| nickel-dependent hydrogenase large subunit [Roseiflexus
castenholzii DSM 13941]
Length = 540
Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 62/521 (11%), Positives = 125/521 (23%), Gaps = 133/521 (25%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
++ K+ G G L L + ++ +V + G + RG E +++ K
Sbjct: 5 VNTKRMDLHVSPLG----RVEGDLDLRVTVEDGVVTQAWTEAG-MFRGFEMILKGKDPQA 59
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R+ + + + A A++ E+P L+R + + S
Sbjct: 60 GLIVTPRICGICGGSHLYKSAFALDVAWRTELPPNALLVRNIAQACETLQSVPRWFYALF 119
Query: 121 MDVG---------------------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
G K + Y G H+++ PG
Sbjct: 120 AIDLTNRRYAKAKGYDEAVRRFAPLVGESYERGVTLSAKPVEIYAIFGGQWPHSSFMIPG 179
Query: 160 GVHQDIPPELVEDIGCWCDSFP-------------------SALNDISDLLTGNRIFK-- 198
GV V + F D+ + N
Sbjct: 180 GVMCGPTLSDVTRSIAILEEFRHNWLESRFLGCSVDRWLEIKTWEDVLAWVDENESQHNS 239
Query: 199 ---------------QRNVNIGTVKLEDAWGWGF-----------------SGVMIRGSG 226
+ G + SG+ G
Sbjct: 240 DLGFFLRFGLEIGLDRFGAGCGNYLAMGTYLHHEKYNRPTIEGRNAALIQRSGIYAGGKH 299
Query: 227 AAWDL---RKSQPYECYSE----LDFDIPIGKH---------GDCYDRYLVRMMEMRESV 270
+D R+ + Y F+ + + ++ SV
Sbjct: 300 YEFDQARVREDHTFSFYQGSGLLHPFEGRTEPIDPADAKRQGKYTWAKAPRYDVDGLGSV 359
Query: 271 KIIRQCVNRLLGKNKVGPVSASD----------------PKIVPPKRADMK------RSM 308
+ + R + K G +++ + K +
Sbjct: 360 PLEVGPLARQVVAGKPGEEWQDVDPLFSDIIAKKGPSVLVRVLARLHEEAKLYKNVREWL 419
Query: 309 ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL--- 365
L H + Y + G + A EA +G +++ K ++ P ++
Sbjct: 420 GELDLHDRFYIKPVEHEFGRGFGATEAARGALADWIVL-ENGKIANYQVVTPTAWNIGPR 478
Query: 366 ------QAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
ME G + D + + S D
Sbjct: 479 DSRNVNGPMEQAYLGTTIHDPGDPVELGHVARSFDSCLVCT 519
>gi|30016933|gb|AAP04005.1| uptake hydrogenase large subunit [Gloeothece sp. PCC 6909]
Length = 531
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 73/512 (14%), Positives = 124/512 (24%), Gaps = 130/512 (25%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
T+N P G L + ++++ V H L RG E ++ K + R+
Sbjct: 5 TLNIAPV-GRVEGDLDVRVDIEDGYVVNAWTHA-ELFRGFEVILRGKDSQAGLIVTPRVC 62
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM------DV 123
+ + + A++ G E+P L R L + I S
Sbjct: 63 GICGASHLTCASWALDTAWGTEVPRNAILARNLGQLVETIQSQPRYFYGLFAIDLTNKKY 122
Query: 124 GALTPPLWGFE---------------EREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE 168
K + Y G H+++ PGGV
Sbjct: 123 KNSPFYEEALRRFAPFTGKSYEIGITVSGKPVKIYALFGGQWPHSSFMVPGGVMCAPTLT 182
Query: 169 LVEDIGCWCDSFPSAL-------------------NDISDLLTGNRIF------------ 197
+ + F + +D L +
Sbjct: 183 DITRAWAILEYFRTNWLEPMWLGCSLERYEEIQTYDDFMAWLDESPAHANSDLGFYWRMG 242
Query: 198 -----KQRNVNIGTVKLEDAWGW----------GFSGVMIRGSGAAWDL----------- 231
+ V G G + +I SG
Sbjct: 243 LDIGLDKYGVGCGRYSTWGYLPHEDRYQKPTIEGRNAAVIMKSGVYDSFTDTHTLMDHGF 302
Query: 232 -RKSQPYECYSELDFDIP--------------IGKHGDCYDRYLVRMMEMR-ESVKIIRQ 275
R++ + Y E DI + + R E + RQ
Sbjct: 303 TRENTTHSWYEEGTEDIHPFDRFTVPTQNNIKDFDEAYSWSSAVTHKDLGRMEVGPLARQ 362
Query: 276 CVNRLLGKNKVGPV---------SASDPKIVPPKRADMKRS------MESLIHHFKLYTE 320
V+ I + A M + +E + F+L
Sbjct: 363 LVSGGQQGESWQHYDGFILDMFKKMGGASIHLRQLARMHEAVKLYREVERCLREFQLKEP 422
Query: 321 GYHVP---VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAM 368
Y P G + A EA +G ++ G K +I AP ++ +
Sbjct: 423 WYIKPTEKDGRGWGATEASRGALCHWIEVQG-GKIKNYQIIAPTTWNVGPRDGQGVRGPI 481
Query: 369 EFLCKGHQLAD------VSAILGSLDIVFGEV 394
E G + D V + S D
Sbjct: 482 EEALIGTPVEDLRDPVEVGHVARSFDSCLVCT 513
>gi|159905674|ref|YP_001549336.1| coenzyme F420 hydrogenase subunit alpha [Methanococcus maripaludis
C6]
gi|159887167|gb|ABX02104.1| coenzyme F420 hydrogenase, subunit alpha [Methanococcus maripaludis
C6]
Length = 390
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 62/383 (16%), Positives = 113/383 (29%), Gaps = 20/383 (5%)
Query: 21 HGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +L+L +D E IV + RG E +++ K R+ + A
Sbjct: 14 EGHAKLVLNVDDEGIVTKAFYPNTTPVRGFETMLQGKAAAFGPVAVMRICGICQATHGIA 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSH----LLNVTTQAMDVGALTPPLWGFEE 135
A+E + +EIP G ++R L R+ SH LL V A T + G +
Sbjct: 74 SCEAIEHAIDMEIPKDGMILRELVGLGNRMHSHPLHHLLIVDDLLKPEEAGTLRVEGIKL 133
Query: 136 ----REKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLL 191
R+ + + G +H GG+ +I + C + N + ++L
Sbjct: 134 IQKMRKAGQMVVDITGGEGIHPPNLIVGGMRTNITERAKAKLYYACREYEKDCNAMLEVL 193
Query: 192 TGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGK 251
+ I + + W E ++ +
Sbjct: 194 EMLMERYLEEIGIPDLGKHNLPYIATDSTFGNRDAINWKDVT----EVTAQRYYADFPDI 249
Query: 252 HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESL 311
++ E R + G + +KRS+E +
Sbjct: 250 AQTATNQIPFYRGNPAEGGPRARMI--KYGNFKPAGGAMDINLARALENFEAVKRSLELI 307
Query: 312 IHHF-----KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
K ++ EAP+ K + I A +
Sbjct: 308 DELNINGITKEVPNFHNAKEEFGIGVHEAPRATNTHMAKMGKDGKIEKYNIIAASTWNFP 367
Query: 367 AMEFLCKGHQLADVSAILGSLDI 389
A+E +G+ I+ + DI
Sbjct: 368 AVEKAIEGYHHKYAEVIMRAYDI 390
>gi|288561320|ref|YP_003424806.1| coenzyme F420 hydrogenase alpha subunit FrhA [Methanobrevibacter
ruminantium M1]
gi|288544030|gb|ADC47914.1| coenzyme F420 hydrogenase alpha subunit FrhA [Methanobrevibacter
ruminantium M1]
Length = 385
Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats.
Identities = 61/380 (16%), Positives = 117/380 (30%), Gaps = 29/380 (7%)
Query: 28 LELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEK 86
+E+D E IV + RG EK++ K A R+ V P+ A A++
Sbjct: 1 MEIDDEGIVTKGRYFSITPVRGLEKMVTGKAPETAPVLCQRICGVCPIPHTLASVEAMDD 60
Query: 87 LLGIEIPIRGQLIRVLYSEIGRILSHLLNVT----TQAMDVGALTPPLWGFEEREKLMVF 142
L IEIP L+R L + SH ++ + T R+
Sbjct: 61 SLDIEIPKAAALLRELTISASNLNSHAIHHFLVAPDFVPEDLFKTAVDSVGTIRKNAQYV 120
Query: 143 YERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNV 202
+ +G +H + R GG+ ++I + + + +++ +L+T + K
Sbjct: 121 VDMVAGEGIHPSDVRIGGMARNISELARKKLYARLKALVPVVDNHVELMTNLILEKDIPE 180
Query: 203 NIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVR 262
+G + G + + P Y + + YD V
Sbjct: 181 GLGVIDAPVFASDVVYGKRDFFDLDRFT--EIVPEAWYDDPEVGKRACTTIPLYDGVNVE 238
Query: 263 MMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK-----RADMKRSMESLIHHFKL 317
R V++ G + G V+ + K + +++ +
Sbjct: 239 TG--------PRARVDKFQGYKERGVVAQHLSRAREMKTYLSRAIAILDELDTAANTLAD 290
Query: 318 YTEGYHVPVGE---VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKG 374
+ P G +EAP+G K P ++ M +G
Sbjct: 291 FD-----PRGTNKLGIGVIEAPRGTDVHMAQVK-DGKTAFYSALVPTTWNIPTMGPATEG 344
Query: 375 HQLADVSAILGSLDIVFGEV 394
++ + D
Sbjct: 345 FHHEWGPHVIRAYDPCLSCA 364
>gi|3132511|gb|AAC16277.1| hupL homolog [Nostoc punctiforme PCC 73102]
Length = 531
Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats.
Identities = 70/502 (13%), Positives = 121/502 (24%), Gaps = 129/502 (25%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + ++++ V H L RG E ++ K + R+ + + +
Sbjct: 14 VEGDLDVRVDIEHGRVVNAWTHA-ELFRGFEVILRGKDPQAGLIVTPRICGICGGSHLTS 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV---------------- 123
+ A++ E+P L R L + I S
Sbjct: 73 ASWALDTAWETEVPRNAILARNLGQIVETIQSIPRYFYGLFAIDLTNKKYRNSRHYEEAV 132
Query: 124 -----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
G K + Y G H++Y PGGV + +
Sbjct: 133 RRFAAFTGKSYELGITISAKPVEIYALLGGQWPHSSYMVPGGVMCAPTLTDITRAWAILE 192
Query: 179 SFPSAL-------------------NDISDLLTGNRIFKQ-----------------RNV 202
F + +D D L +R +
Sbjct: 193 YFRTNWLEPVWLGCSLERYEQIQTYDDFRDWLDEDRNHRDSDLGFYWRMGLDIGLDRYGA 252
Query: 203 NIGTVKLEDAWGW----------GFSGVMIRGSGAAWDL------------RKSQPYECY 240
+G G + MI SG R++ + Y
Sbjct: 253 GVGKYVTWGYLTHEDKYQKPTIEGRNAAMIMKSGVYDSFADTHVLMDQSFTRENTTHSWY 312
Query: 241 SELDFDIP--------------IGKHGDCYDRYLVRMMEMR-ESVKIIRQCVNRLLGKNK 285
E DI + + ++ R E+ + RQ V
Sbjct: 313 DEGTEDIHPSDRTTKPTAINTKDFDNAYSWSSAVLHKDFGRLETGPLARQLVAGGQHGES 372
Query: 286 ---------------VGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV---G 327
G + + R E + F L Y P G
Sbjct: 373 WQHYDGFILDAFQKMGGASIHLRQLARVHEIVRLYRQAERCLREFVLNDPWYIKPKEKDG 432
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLA 378
+ A EA +G ++ G K ++ A ++ +E G +
Sbjct: 433 RGWGATEASRGSLCHWIDI-EGGKIKNYQVIAATTWNIALRDGEGIRGPIEEALIGTPIY 491
Query: 379 D------VSAILGSLDIVFGEV 394
D V + S D
Sbjct: 492 DSSDPVEVGHVARSFDSCLVCT 513
>gi|2126549|pir||I39692 cytochrome-c3 hydrogenase (EC 1.12.2.1) (NiFe) large chain -
Anabaena sp
gi|520460|gb|AAC79878.1| [NiFe] uptake hydrogenase large subunit [Nostoc sp. PCC 7120]
gi|1094354|prf||2105427A NiFe uptake hydrogenase:SUBUNIT=large
Length = 531
Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats.
Identities = 69/502 (13%), Positives = 121/502 (24%), Gaps = 129/502 (25%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + +E++ V H L RG E ++ K + R+ + + +
Sbjct: 14 VEGDLDVRVEIEDGRVVNAWTHA-ELFRGFEIILRGKDPQAGLIVTPRICGICGASHLTS 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV---------------- 123
+ A++ +P L R L + I S
Sbjct: 73 ASWALDTAWNTTVPRNAILARNLGQIVETIQSIPRYFYGLFAIDLTNKKYRSSRFYDEAV 132
Query: 124 -----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
G K + Y G H++Y PGGV + +
Sbjct: 133 RRFSAYTGKSYELGVTISSKPVEIYALFGGQWPHSSYMVPGGVMCAPTLTDITRAWAILE 192
Query: 179 SFPSAL-------------------NDISDLLTGNRIFK-----------------QRNV 202
F + +D D L + + +
Sbjct: 193 YFRTNWLEPVWLGCSLERYEEIQTYDDFMDWLEADIKHRESDLGFYWRMGLDIGLDRYGA 252
Query: 203 NIGTVKLEDAWGW----------GFSGVMIRGSGA------------AWDLRKSQPYECY 240
+G G + MI SG R++ + Y
Sbjct: 253 GVGKYVSWGYLPHEDKYQKPTIEGRNAAMIMKSGVYDSFENTHTLMDHTFARENTTHAWY 312
Query: 241 SELDFDIP--------------IGKHGDCYDRYLVRMMEMR-ESVKIIRQCVNRLLGKNK 285
E + D+ K+ + ++ R E + RQ V
Sbjct: 313 DEGNADVHPFDRTTKPTHKNTKDFKNAYSWSTAVLHQDFGRLEVGPLARQLVAGGQHGES 372
Query: 286 ---------------VGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV---G 327
G + + R E + F L Y P G
Sbjct: 373 WQHYDGFILDAFQKMGGASIHLRQLARVHEIVKLYRQAERCLREFVLNDPWYIKPKEKDG 432
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLA 378
+ A EA +G ++ G K ++ A ++ +E G +
Sbjct: 433 RGWGATEASRGSLCHWIDI-EGGKIKNYQVIAATTWNVGPRDSEGVRGPIEEALIGTPIE 491
Query: 379 D------VSAILGSLDIVFGEV 394
D V + S D
Sbjct: 492 DSRDPVEVGHVARSFDSCLVCT 513
>gi|149917176|ref|ZP_01905676.1| nickel-dependent hydrogenase, large subunit [Plesiocystis pacifica
SIR-1]
gi|149822092|gb|EDM81485.1| nickel-dependent hydrogenase, large subunit [Plesiocystis pacifica
SIR-1]
Length = 457
Score = 153 bits (388), Expect = 3e-35, Method: Composition-based stats.
Identities = 60/415 (14%), Positives = 112/415 (26%), Gaps = 41/415 (9%)
Query: 20 AHGVLRLILELD--GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQE 77
G R L LD GE V I R E + + + R+ + P+ +
Sbjct: 33 VEGEGRFWLRLDAAGE-VADAKLAIFEAPRFFEAFLRGRDLEEVPDIVARICGICPVAYQ 91
Query: 78 HAYALAVEKLLGIEIP-IRGQLIRVLYSEIGRILSHLLNVTTQAMDVG------------ 124
A+E++LG++ P + +R L I SH+L+V
Sbjct: 92 MGAVRALERILGVDPPSPGIRSLRRLLYCGEWIESHVLHVFMLHAPDFLGYESAIEMAAD 151
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
G ++ E G +H + GG + + + ++
Sbjct: 152 HRARVEQGLRLKKVGNAIIEVLGGRAIHPVSPKVGGFSRTPTVAELAALRPRLEAALEEA 211
Query: 185 NDISDLLTGNRIFKQRNVNIGT-VKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ + G + + + ED V++RG G + + + + E
Sbjct: 212 EAVVEWSAGLPMPALELDYVFVSLASEDYPIEFGDEVLVRGRGRDERVDVDEFLDHFVED 271
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRE----SVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
D + M + ++ + L PV I+
Sbjct: 272 HVAHSNALQCRLRDGTPYLVGPMARLNLFADRLHPRAARALERSGLALPVRNPYQSIIVR 331
Query: 300 KRADMKRSMESLIHHFKLYT---------EGYHVPVGEVYAAVEAPKGEFGVYLISDGGN 350
+ +L G EAP+G +D
Sbjct: 332 AVEVVHAFATALDIVTNYTRRVEPAFVELPPAGARAGRASGGTEAPRGLCWHRYETDAEG 391
Query: 351 KPYRCKIRAPGYAHLQAMEFLCKG---HQLA-D-------VSAILGSLDIVFGEV 394
+I P + +E G LA D ++ + D
Sbjct: 392 LIVDARIVPPTSQNQARIERDLVGLAPQLLAMDHGAATRRCEQLIRAYDPCISCA 446
>gi|253702557|ref|YP_003023746.1| nickel-dependent hydrogenase large subunit [Geobacter sp. M21]
gi|251777407|gb|ACT19988.1| nickel-dependent hydrogenase large subunit [Geobacter sp. M21]
Length = 473
Score = 153 bits (388), Expect = 3e-35, Method: Composition-based stats.
Identities = 64/410 (15%), Positives = 111/410 (27%), Gaps = 65/410 (15%)
Query: 47 RGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEI 106
RG EK++ + R+ V P A A++ G+ P L+R L
Sbjct: 42 RGFEKILIGMEADRMPHVTARICGVCPTAHHIAACNALDHAAGVTPPPAALLLRELMYLG 101
Query: 107 GRILSHLLNVTTQAMDV-------------------GALTPPLWGFEEREKLMVFYERAS 147
I SH L++ R E
Sbjct: 102 HIIHSHSLSIFVLQGPDLVLGLDADPAIRNIVGIVQANPELAKLALRLRSIGQKINEMVG 161
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND--------ISDLLTGNRIFKQ 199
G H GG+ + E ++ + W D L + L + +
Sbjct: 162 GRGTHPVTSVAGGIAFVLDKEKLKALKEWVDEARGVLPQVVPAVKGLLMRALEAHPEMGE 221
Query: 200 RN--VNIGTVKLEDAWGWGFSGVMIRGS---------GAAWDLRKSQPYECYSELDFDIP 248
+ + G ++D SG + G R + +
Sbjct: 222 KWIVPSFGMGTVQDGAVSLISGELRVIDDTGATVLEFGIEEYDRYLRESVVEWSYMKKVQ 281
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVN-------RLLGKNKVGPVSASDPKIVPPKR 301
+ G+ +D + M M + + + + RL G V + K++
Sbjct: 282 VELDGELHDYRVGPMARMNVARRFGTEMADAEYAEFARLGGAPCHTTVFQTYAKLIEIVW 341
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPV----GEVYAAVEAPKGEFGVYLISDGGNKPYRCKI 357
A ++R+ E I K VPV G VEAP+G D +
Sbjct: 342 A-IERAGE--ILRDKAIRGETRVPVRFQGGRGVGHVEAPRGTLIHDYQIDERGIVRAANL 398
Query: 358 RAPGYAHLQ----AMEFLCKGHQL--AD-------VSAILGSLDIVFGEV 394
+ ++E + H + D V + D
Sbjct: 399 IVATQQNYSLINRSIEQSAQSHVIDRPDDRALMNAVEFSIRCYDPCLSCA 448
>gi|291519868|emb|CBK75089.1| Ni,Fe-hydrogenase III large subunit [Butyrivibrio fibrisolvens
16/4]
Length = 150
Score = 153 bits (388), Expect = 4e-35, Method: Composition-based stats.
Identities = 43/144 (29%), Positives = 74/144 (51%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ +GPQHP + L L L+ E V P IG +HRG E L K F + V +R+
Sbjct: 6 IVPYGPQHPVLPEPIHLDLVLEDEKVLAAIPSIGFIHRGLESLTSKKDFNEMVYVAERIC 65
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ Y +A+E ++ +E+P R +R +++E+ R+ SHLL + A G +
Sbjct: 66 GICSFMHGMGYCMALEDIMNVEVPRRADYLRTIWAEMSRLHSHLLWLGLLADGFGFESLF 125
Query: 130 LWGFEEREKLMVFYERASGSRMHA 153
+ + REK++ +E ++G R+
Sbjct: 126 MHSWRLREKILDMFEVSTGGRVIF 149
>gi|322419768|ref|YP_004198991.1| Coenzyme F420 hydrogenase [Geobacter sp. M18]
gi|320126155|gb|ADW13715.1| Coenzyme F420 hydrogenase [Geobacter sp. M18]
Length = 423
Score = 153 bits (388), Expect = 4e-35, Method: Composition-based stats.
Identities = 62/407 (15%), Positives = 125/407 (30%), Gaps = 36/407 (8%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G + + +G V+RV+ + R E L+ K+F + R+ + +
Sbjct: 13 LEGHGSVRVYREGIRVQRVELQLSESPRLFEALLIGKSFAEVPEIICRICSLCSTVHKVT 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD------------VGALT 127
LAVE +LG+E+ L R L G + H L++ + + A
Sbjct: 73 ALLAVEDVLGVEVSEVTALTRELMLNAGMLQDHALHLYCLVLPDLLGVRGVAELALSAPD 132
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
G ++ + E A G +H R GG+ + + + + + A +
Sbjct: 133 LLKTGLAIKKAGNLVTETAGGRLIHPVNIRIGGMGRILTRQELSRLKDALQGVLPACQEA 192
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPY-----ECYSE 242
L + + L+ A + + + G ++ +R + + +S
Sbjct: 193 YRLFST-PFPFPELPKPDYLSLQPAQKPMAAKLCLMRGGISFPVRDYRAHIEETVLPHSN 251
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
GK + ES R+ + + ++
Sbjct: 252 AKLAKVHGKEATVGALARLNGGAELESAA--REIFANHKAELAGKDIRGNNLAQAIELCD 309
Query: 303 DMKRSMESLIHHFKLYTE-----GYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKI 357
+R+++ + L E G AA EAP+G D R +
Sbjct: 310 AAERALQLIDRLLDLGPERNGTGRIPPRPGTGSAACEAPRGVLIHSYSFDREGICTRADV 369
Query: 358 RAPGYAHLQAMEFL-------CKGHQLADV----SAILGSLDIVFGE 393
P + A+ +G + A + ++ D
Sbjct: 370 ITPTSLNQGALARDLLALARGMEGEETARMTTALERLIRCYDPCISC 416
>gi|152990707|ref|YP_001356429.1| Ni-Fe hydrogenase, large subunit HupV [Nitratiruptor sp. SB155-2]
gi|151422568|dbj|BAF70072.1| Ni-Fe hydrogenase, large subunit HupV [Nitratiruptor sp. SB155-2]
Length = 403
Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats.
Identities = 50/401 (12%), Positives = 108/401 (26%), Gaps = 34/401 (8%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + D + + V + +RG E+++ + A+ R+ + A
Sbjct: 9 IEGEAFLEFQKDKQTITDVKV-LFPHYRGIEEILRGRDPWDALVINPRICGICGHAHLQA 67
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVT-TQAMDVGALTPPLWGFEEREK 138
A+ +E + + I + + IR + I +H+ ++
Sbjct: 68 TAMVLESIFQVNITQKAKNIREITRFCEIIQNHIKWFYLVIFHELNIPYDFTKVHHLIVT 127
Query: 139 LMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTG--NRI 196
+ SG H++Y GGV D + + L N
Sbjct: 128 INKLLALFSGQWPHSSYCVVGGVTCDPTSLEIHQAKTLIQQIRDQFIQLIGKLHDPLNLT 187
Query: 197 FKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGK-HGDC 255
+ + + E I S + + + +
Sbjct: 188 NDLQKLYRTLQEKELLLVGKSHDRFITFSQDSHVSNIKLLHGQKRKTKLTLIEENEQKRS 247
Query: 256 YDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPK-----IVPPKRADMKRSMES 310
Y + + + E+ + R + + K + + ++ +E
Sbjct: 248 YAKNVTYNGKYYETGPLARL----MQQTDPFVRYFHRRFKDSITTRIIARIYEVSLLIEK 303
Query: 311 LIHHFKLYT------EGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
+I H + G ++EA +G K P +
Sbjct: 304 IIDHLATIDLSQPSVVESKMQDGTAIISIEAARGSLIHQATIH-QGKIETYNFITPTQWN 362
Query: 365 L--------QAMEFLCKGH---QLADVSAILGSLDIVFGEV 394
L ++ G ++A+ I S DI
Sbjct: 363 LSNGTSQNPSVIQKAIVGTSDEKIAN--LIFRSFDICSVCT 401
>gi|39997812|ref|NP_953763.1| NAD-reducing hydrogenase subunit beta [Geobacter sulfurreducens
PCA]
gi|39984704|gb|AAR36090.1| NAD-reducing hydrogenase, beta subunit [Geobacter sulfurreducens
PCA]
Length = 478
Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats.
Identities = 64/443 (14%), Positives = 120/443 (27%), Gaps = 73/443 (16%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G + + L+ V H+ RG E++ ++ + R+ + P++
Sbjct: 13 IEGHATITIRLNDAGAVADARFHV-TEFRGFERICIGRSIWEMPGITARICGICPVSHSI 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV--------------- 123
+ A A + +LG+EIP +R + + I SH L+ +
Sbjct: 72 SAARAGDAILGVEIPPAAVHLRRIANLASLIQSHALSFFHLSAADLLMGMDEEPSRRNLW 131
Query: 124 ----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ +G +H ++ PGGV + + PE + I
Sbjct: 132 GLVAHHPEVARGGIRLRQIGQKIVSDVAGESIHPSWAVPGGVREPLSPEGRDRIAALLPE 191
Query: 180 FPSALNDISDLLTG-NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSG------------ 226
+ + +L G + G A G + G
Sbjct: 192 GLAIVRGALGMLDGIYARHEAEITAYGDFPSLFAGLTASDGGLEHYDGSLRFTDSAGVHV 251
Query: 227 ----------------AAWDLRKSQPYECYSELD--FDIPIGKHGDCYDRYLVRMMEMRE 268
W Y + + + +G E
Sbjct: 252 DELSPEHYAQAVTERAEPWSYMTFPYYHPHGDREGGGMFRVGPLARLNICDRAGTPEADR 311
Query: 269 SVKIIRQCVNRLLGKNKVGPVSASDPKIVPP----KRADMKRSMESLIHHFKLYTEGYHV 324
+ RQ R G G +++ +R M ++ G +
Sbjct: 312 ELAAFRQV--RGAGGMVTGSFHYHHARLIEILHALERIGMLLDEPDILDRHVRSEAGVNR 369
Query: 325 PVGEVYAAVEAPKGEFGVYLISDGGNKPYRCK-IRAPGYAHL-------QAMEFLCKGHQ 376
P G EAP+G D R + A G +L Q +G +
Sbjct: 370 PAG--VGFCEAPRGTLFHDYEVDDDGIVSRVNLLIATGMNNLAINRTIRQVAAEFIRGGE 427
Query: 377 LAD-----VSAILGSLDIVFGEV 394
+ + + + D
Sbjct: 428 FTEGILNRIEHGVRAYDPCLSCA 450
>gi|291288448|ref|YP_003505264.1| Cytochrome-c3 hydrogenase [Denitrovibrio acetiphilus DSM 12809]
gi|290885608|gb|ADD69308.1| Cytochrome-c3 hydrogenase [Denitrovibrio acetiphilus DSM 12809]
Length = 479
Score = 153 bits (386), Expect = 5e-35, Method: Composition-based stats.
Identities = 52/466 (11%), Positives = 118/466 (25%), Gaps = 94/466 (20%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G + + ++ V V G ++RG E+++ + + + R+ V +
Sbjct: 13 IEGHMSVETAVESGKVSEVRIA-GNMYRGFERMLLGRHPVDSARIAQRICGVCHEVHGVS 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG--------------- 124
+A+E++ GI P G ++R + + + H+L+ +
Sbjct: 72 SVMALEQIFGITPPANGIILRDMILGLHIVTDHILHFYNLCLPDYVNLSSAAGYNGKDRD 131
Query: 125 ---------------------------------ALTPPLWGFEEREKLMVFYERASGSRM 151
+ R +
Sbjct: 132 LRNISDWLSSSGTAFMQNRTEGNYIKDKDSARRFALNYFEAIKIRSQAAGGLAILGAKVP 191
Query: 152 HAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA-----LNDISDLLTGNRIFKQRNVNIGT 206
PGG+ +I + + D+ + D+ ++ + T
Sbjct: 192 FIHALMPGGITTEITTDALMKYYRALDATAEFVSSSFMPDVIEIAQRFPEYFDIGEAYNT 251
Query: 207 VKLEDAWGW-----GFSGVMIRGSGAAWDLRKSQP---YECYSELDFDIPIGKHGDCYDR 258
++ GV+ G +D K + Y + + +
Sbjct: 252 FYAHQSFNSAKGDLFTQGVIADGEKVDFDYNKVKELIGSSYYKADGSPDENAEGAYSWIK 311
Query: 259 YLVRMMEMRESVKIIRQCVNR------LLGKNKVGPVSAS-DPKIVPPKRADMKRSMESL 311
E+ I R V LL + + +S +++ +
Sbjct: 312 APRYDGIPLETGPIARAAVGNDEEFKSLLRRLGQKSIKSSVMGRLLARAHESVMLCNYLY 371
Query: 312 IHHFKLYTEGYHVPV--------GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
+ + GE A +G ++ + K K+ P
Sbjct: 372 GRTEEYVIGKPAIRAVDLQAPVSGEGIGFSVAARGALVHHITAY-KGKVTDYKMIVPSTW 430
Query: 364 H--------LQAMEFLCKGHQLA--------DVSAILGSLDIVFGE 393
+ L E G + +V ++ S D
Sbjct: 431 NFGPTVDGRLGVAEKAVLGTPVNYGGVSGSIEVGRVIRSFDPCTAC 476
>gi|217979860|ref|YP_002364007.1| nickel-dependent hydrogenase large subunit [Methylocella silvestris
BL2]
gi|217505236|gb|ACK52645.1| nickel-dependent hydrogenase large subunit [Methylocella silvestris
BL2]
Length = 532
Score = 153 bits (386), Expect = 5e-35, Method: Composition-based stats.
Identities = 68/501 (13%), Positives = 120/501 (23%), Gaps = 128/501 (25%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + +++ +V L RG E ++ K + R + +
Sbjct: 16 VEGDLDVRVDVQDGVVVNA-WTQAELFRGFEVILRNKDPQAGLIVTPRACGICGASHLTC 74
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKL 139
A A++ G +P L R L + I S + M E +
Sbjct: 75 AAWALDTAWGTTVPRNAILARNLGQVVESIQSLPRHHYGLFMIDYTNKNYAKSKYYEEAV 134
Query: 140 MVF---------------------YERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
+ Y G H++Y PGGV V +
Sbjct: 135 KRWAPFTGTNYEIGVTISGRPVEIYALLGGQWPHSSYMVPGGVMCAPTLTDVTRSWGILE 194
Query: 179 SFP-------------------SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF-- 217
F +L+D L ++ + ED +
Sbjct: 195 HFRRNWIEPIWLGCSLERYEEIKSLDDFKAWLDERPEHANSDLGMFWRMSEDIGLDKYGQ 254
Query: 218 -SGVMIRGSGAAWDLRKSQPY------------------------------------ECY 240
G + + + ++P Y
Sbjct: 255 GHGRFVSWGYLPHEDKYNKPTIEGRNASLFMKSGVYDSKTDAHQLMDQSFTREDTIRAWY 314
Query: 241 SELDFDIP-------------IGKHGDCYDRYLVRMMEMR-ESVKIIRQCVNRLLGKNK- 285
E P + + + R E+ + RQ + +
Sbjct: 315 DEPSGKHPFDRTTAPTRKNTVDAEGKYSWATAVRHAQAGRLEAGPLARQLIAGGPHGEEW 374
Query: 286 --------------VGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP---VGE 328
G + + R E + F+L Y P G
Sbjct: 375 QHYDPLVLDMFKKLGGASVMLRHFARMHECVKLYRRAEYYLKEFRLNDPWYIKPTERDGR 434
Query: 329 VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLAD 379
+ A EA +G ++ G K +I AP ++ ME G +AD
Sbjct: 435 GWGATEAIRGALCHWIEI-EGGKIKNYQIIAPTTWNVGPRSDDGVRGPMEEALIGAPIAD 493
Query: 380 ------VSAILGSLDIVFGEV 394
+ + S D
Sbjct: 494 PSDPVEIGHVCRSYDSCLVCT 514
>gi|220919393|ref|YP_002494697.1| nickel-dependent hydrogenase large subunit [Anaeromyxobacter
dehalogenans 2CP-1]
gi|219957247|gb|ACL67631.1| nickel-dependent hydrogenase large subunit [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 494
Score = 153 bits (386), Expect = 6e-35, Method: Composition-based stats.
Identities = 61/450 (13%), Positives = 110/450 (24%), Gaps = 77/450 (17%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD VE + L RG E+ + + + V P
Sbjct: 13 LEGHGKIEILLDDAGDVESALLQVPEL-RGFERFCVGRPAEEMPQLTAHVCGVCPAAHHL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA------------- 125
A A++ L +E P +L R LY ++ HLL+
Sbjct: 72 AAVQALDALYAVEPPPAARLARALYYQLFIFEDHLLHYWYMGGPDFYAGSDAPAPMRNIL 131
Query: 126 -------LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
R + +G +H + PGG+ + + V
Sbjct: 132 GVLAKVGADLGKRILSARREARELMAALAGRTVHPVFALPGGISKAVDAATVARARALAP 191
Query: 179 SFPSALNDIS-----DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA------ 227
D +L + + V+ G + G
Sbjct: 192 GLVRFAEDTLASFRAAVLDHPEYSEALASDAYRVRCHSMGMVDADGRLAFLDGRLRVIDP 251
Query: 228 --------------AWDLRKSQP--YECYSELDFDIPIGKHG---------DCYDRYLVR 262
+ +P Y + L G R V
Sbjct: 252 AGRELATFAPRDWLDHLAERVEPWTYAKLTYLKSKGWTGFTEGDDTGLYRVGPLARLNVA 311
Query: 263 MMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP--KRADMKRSMESLIHHFKLYTE 320
+ RQ + LG ++ ++V ++ E E
Sbjct: 312 RAMATPRAEAERQRLFEALGWPAHQTLAFHWARLVEALQAAETAQQLAEDPGLGDPHVRE 371
Query: 321 GYHVPVG--EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF-------- 370
G E AVEAP+G + +D + + ++
Sbjct: 372 VPAPLPGPREGVGAVEAPRGTLFHHYAADADGILTAANLVVASQHNAAPVQVSVRKAAKG 431
Query: 371 LCKGHQLADV------SAILGSLDIVFGEV 394
L +G ++ D + D
Sbjct: 432 LIRGGKV-DAALLNRLEMAFRAYDPCNACA 460
>gi|289804002|ref|ZP_06534631.1| formate hydrogenlyase subunit 5 [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 223
Score = 153 bits (386), Expect = 6e-35, Method: Composition-based stats.
Identities = 53/219 (24%), Positives = 90/219 (41%), Gaps = 31/219 (14%)
Query: 178 DSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPY 237
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+
Sbjct: 4 QQMRRDVQELVDMLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPF 63
Query: 238 ECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIV 297
Y L ++ + D R VR+ E+ S+ +I ++ L G GP+ +
Sbjct: 64 VGYGLLPMEVHSEQGCDVISRLKVRINEVYTSLNMIDFGLDNLPG----GPLMVEGFTYI 119
Query: 298 PPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKI 357
P + A EAP+G+ + ++ K YR +
Sbjct: 120 PHRFAL---------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRC 152
Query: 358 RAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
RA YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 153 RAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 191
>gi|4379267|emb|CAA43500.1| F420-reducing hydrogenase subunit [Methanococcus voltae PS]
Length = 411
Score = 152 bits (385), Expect = 6e-35, Method: Composition-based stats.
Identities = 66/387 (17%), Positives = 120/387 (31%), Gaps = 23/387 (5%)
Query: 22 GVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAY 80
G +L+L +D + IV + RG E +++ K R+ + A
Sbjct: 15 GHAKLVLNVDDDGIVTKAFYPNTTPVRGFETMLQGKPAAFGPIAVMRICGICQATHGIAS 74
Query: 81 ALAVEKLLGIEIPIRGQLIRVLYSEIGRILSH----LLNVTTQAMDVGALTPPLWGFEE- 135
A+E +G EIP G ++R L R+ SH LL V A T + G +
Sbjct: 75 CEAIENAIGAEIPQDGAILRELLGLGNRMHSHPLHHLLIVDDLLKPEEADTLRIDGIKLI 134
Query: 136 ---REKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLT 192
R++ + + G +H GG+ +I + + + DL+
Sbjct: 135 QKMRKEGQLIVDIVGGEGIHPPNLVIGGMRNNITERAKSKLYYASKEYQEDARQMYDLIK 194
Query: 193 GNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS-ELDFDIPIGK 251
+ ++ IG L + G D K + + +
Sbjct: 195 M--LTERYLDEIGIPDLGRHDLPYIATDTTFG---NRDNLKLDDIAELTAQNYYSNYPEI 249
Query: 252 HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESL 311
++ + + E R + G V + ++RS+E L
Sbjct: 250 AQTATNQIPLYLGTPAEGGPRARMV--KFGSFRTDGGVMDVNLARALENLGAVERSLELL 307
Query: 312 ----IHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
I T Y G EAP+ + +I A ++
Sbjct: 308 EELNIEGATKITPEYK--DGFGVGVHEAPRATNTHMAEMGADGRIKNYRIIAASTWNMPV 365
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEV 394
+E +G+ I+ + DI
Sbjct: 366 VEKAIEGYHHKYAEVIMRAYDIXASCA 392
>gi|118472926|ref|YP_886615.1| hydrogenase-2, large subunit [Mycobacterium smegmatis str. MC2 155]
gi|118174213|gb|ABK75109.1| hydrogenase-2, large subunit [Mycobacterium smegmatis str. MC2 155]
Length = 535
Score = 152 bits (385), Expect = 7e-35, Method: Composition-based stats.
Identities = 58/519 (11%), Positives = 122/519 (23%), Gaps = 134/519 (25%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ F G G L + + ++ +V + RG E ++ K +
Sbjct: 2 TELDLFVSPLG----RVEGDLDVRVTINDGVVTSAWTEAA-MFRGFEIILRGKDPQAGLI 56
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
R+ + + + A A++ +P LIR + + S
Sbjct: 57 VCPRICGICGGSHLYKSAYALDTAWRTHMPPNATLIRNICQACETLQSIPRYFYALFAID 116
Query: 124 ---------------------GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRP---- 158
T G K + Y G H+++ P
Sbjct: 117 LTNKNYAKSKLYDEAVRRFAPYVGTSYQPGVVLSAKPVEVYAIFGGQWPHSSFMVPGGVM 176
Query: 159 ---------------GGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFK----- 198
+ + + ND+ + N
Sbjct: 177 SAPTLSDVTRAIAILEHWNDNWLEKQWLGCSVDRWLENKTWNDVLAWVDENESQYNSDCG 236
Query: 199 ------------QRNVNIGTVKLEDAWG-----------------WGFSGVMIRGSGAAW 229
+ +G + G SGV G +
Sbjct: 237 FFIRYCLDVGLDKYGQGVGNYLATGTYFEPSLYENPTIEGRNAALIGRSGVFADGRYFEF 296
Query: 230 DL---------------RKSQPYECYSEL-DFDIPIGKHGDCYDRYLVRMMEMRESVKII 273
D R P+E + + + + + + + +V +
Sbjct: 297 DQANVTEDVTHSFYEGNRPLHPFEGETIPVNPEDGRRQGKYSWAKSPRYAVPGLGNVPLE 356
Query: 274 RQCV-NRLLGKNKVGPVSASD------------PKIVPPKRADMKR----------SMES 310
+ R+ D P ++ + A M ++
Sbjct: 357 TGPLARRMAASAPDAETHQDDDPLFADIYNAIGPSVMVRQLARMHEGPKYYKWVRQWLDD 416
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH------ 364
L YT+ G+ + + EA +G +++ +K ++ P +
Sbjct: 417 LELKESFYTKPVEYAEGKGFGSTEAARGALSDWIVI-EDSKIKNYQVVTPTAWNIGPRDA 475
Query: 365 ---LQAMEFLCKGHQLADVS------AILGSLDIVFGEV 394
L +E G + D + S D
Sbjct: 476 SEVLGPIEQALVGSPIVDAEDPVELGHVARSFDSCLVCT 514
>gi|78224511|ref|YP_386258.1| nickel-dependent hydrogenase, large subunit [Geobacter
metallireducens GS-15]
gi|78195766|gb|ABB33533.1| Nickel-dependent hydrogenase, large subunit [Geobacter
metallireducens GS-15]
Length = 473
Score = 152 bits (385), Expect = 7e-35, Method: Composition-based stats.
Identities = 56/446 (12%), Positives = 106/446 (23%), Gaps = 82/446 (18%)
Query: 20 AHGVLRLILELD-GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G R+ ++LD G ++ + L RG EK++ + R+ V P
Sbjct: 13 IEGHARVFIDLDDGGALKAAGLVVNEL-RGFEKILTGMDADRMPLVTARICGVCPTAHHL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV--------------- 123
A A++ G+E P +L+R L I SH L++
Sbjct: 72 AATNALDNAAGVEPPTAAKLLRELMYMGHLIHSHCLSLFVLQGPDLVLGLDADPAIRNVV 131
Query: 124 ----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
+ R E G H GG+ + + + W
Sbjct: 132 GVVQAVPDIARKALQCRSIGQKINELVGGRGTHPVTSVAGGIAFVLDADRERQLNAWIQE 191
Query: 180 FPSALND--------ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDL 231
+ + + +L N ++ + G + +G +
Sbjct: 192 AHGLVLELAPVVKQLLMKMLDANPAMLEQW----VIPAWSVGTVKGDGTIALVNGEIRAI 247
Query: 232 RK------SQPYECYSEL-----------------DFDIPIGKHGDCYDRYLVRMMEMRE 268
+ P Y + + R +
Sbjct: 248 DESGARKAQFPTAGYDTHLSEAAVDFSYMKQVSFVEGETRHDYRVGPLARLNISDRYGTP 307
Query: 269 SVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR--ADMKRSMESLIHHFKLYTEGYHVPV 326
R+ R +G+ +++ + M S H +
Sbjct: 308 LADREREEFIRTVGRPCHANALQPWARLIELLYCTERAQEIMASPEIHGETRVP-VKFSG 366
Query: 327 GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLA-------- 378
G VEAP+G D + + + +A
Sbjct: 367 GRGVGHVEAPRGTLIHDYEIDENGIVRAANLIVATQQN-----YALINTMIAQAATSHVI 421
Query: 379 ---D-------VSAILGSLDIVFGEV 394
D V + D
Sbjct: 422 NRPDDQALLNAVEFGIRCYDPCLSCA 447
>gi|288931216|ref|YP_003435276.1| cytochrome-c3 hydrogenase [Ferroglobus placidus DSM 10642]
gi|288893464|gb|ADC65001.1| Cytochrome-c3 hydrogenase [Ferroglobus placidus DSM 10642]
Length = 568
Score = 152 bits (385), Expect = 8e-35, Method: Composition-based stats.
Identities = 61/479 (12%), Positives = 117/479 (24%), Gaps = 119/479 (24%)
Query: 20 AHGVLRLILELD------GE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
G LR+ + G+ V G + RG E +++ + A R+ V
Sbjct: 12 IEGHLRVEMHTKTLETSTGKWTVVDKAYCSGTMFRGIEIILKGRDPRDAWIITQRICGVC 71
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ------------- 119
P A A+E ++ L+R + I H+++
Sbjct: 72 PAPHAEASMQAIEAAFDVKPTPLAILVRNILHGAYYIYDHIIHTYLLIGPELGVLAKYPP 131
Query: 120 ----------AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL 169
+ + + + K G H PGG+ +
Sbjct: 132 MVPPALGKEGIAKLNLGSSYAQALDIQRKANEIVAMWGGKFPHHQTEYPGGMAVKPTADK 191
Query: 170 VEDIGCWCDSFPSA-----LNDISDLLTGNRIFKQ---------------------RNVN 203
+ S + D + +L N + ++
Sbjct: 192 IAKTLSKMTEIWSWVANVMVRDFTKILEANERIGEAVSAILDVDFRGLQDLGASTGNFLS 251
Query: 204 IGTVKLEDAWGWGFSG---VMIRGS-----------GAAWDLRKSQPYECYSELD----- 244
G + + S R S A+DL+K + Y YS D
Sbjct: 252 YGLFPDHENYDDWLSILYSPGYRKSALIQAGAWDGERKAFDLKKIEEYVKYSWYDNASGL 311
Query: 245 --------FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQC-------------------- 276
+ + ++ E + R
Sbjct: 312 HPSEEDLPKPNKEKSDAYSWLKAPRYDKKVYEVGPLARMINTFGMKWKIPITNPVTGEDF 371
Query: 277 --VNRLLGKNKVGPVSASDPKIVPPKRAD--MKRSMESLI--HHFKLYTEGYHVPVGEVY 330
+ + + ++ M +E K+ + V E +
Sbjct: 372 GYFEYEVQNPQGSVIDRVAARVAMTLLIANKMFDWLEEAKSYLGEKVTVKKDKVREREGF 431
Query: 331 AAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLADV 380
EAP+G Y+ K R + P + A E +G L ++
Sbjct: 432 GLWEAPRGALLHYIKVR-DYKIDRYQAVVPSTWNFSPRDDFGQAGAAEKALEGTWLPEM 489
>gi|52550304|gb|AAU84153.1| F420H2 dehydrogenase subunit D [uncultured archaeon GZfos37B2]
Length = 187
Score = 152 bits (385), Expect = 8e-35, Method: Composition-based stats.
Identities = 57/157 (36%), Positives = 89/157 (56%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
K ++ GPQ+P G + L++ GE V ++G H+G EK++E+ T++Q +
Sbjct: 31 KLDDTEMMLHIGPQNPIQPGPFLIDLKISGETVRDSKLYMGYGHKGIEKILESMTYIQGL 90
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD 122
P DR+ Y+A ++ AY +VE+LL IE P R Q IRV+ E+ RI SHLL A D
Sbjct: 91 PVTDRICYLASLSNNEAYVSSVERLLDIEPPERSQYIRVIMQELSRIQSHLLGTGEYATD 150
Query: 123 VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
+G +T L+ ERE ++ E +G+R+ + R G
Sbjct: 151 LGFVTMFLFMIREREYVLGLIEDITGARITHCFPRFG 187
>gi|298506750|gb|ADI85473.1| bidirectional NAD-reducing hydrogenase, large subunit [Geobacter
sulfurreducens KN400]
Length = 478
Score = 152 bits (385), Expect = 8e-35, Method: Composition-based stats.
Identities = 57/439 (12%), Positives = 112/439 (25%), Gaps = 65/439 (14%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G + + L+ V H+ RG E++ ++ + R+ + P++
Sbjct: 13 IEGHATITIRLNDAGAVADARFHV-TEFRGFERICIGRSIWEMPGITARICGICPVSHSI 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV--------------- 123
+ A A + +LG+EIP +R + + I SH L+ +
Sbjct: 72 SAARAGDAILGVEIPPAAVHLRRIANLASLIQSHALSFFHLSAADLLMGMDEEPSRRNLW 131
Query: 124 ----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ +G +H ++ PGGV + + PE + I
Sbjct: 132 GLVAHHPEVARGGIRLRQIGQKIVSAVAGESIHPSWAVPGGVREPLSPEGRDRIAALLPE 191
Query: 180 FPSALNDISDLLTG-NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSG------------ 226
+ + +L G + G A G + G
Sbjct: 192 GLTIVRAALGMLDGIYARHEAEITAYGDFPSLFAGLTASDGGLEHYDGSLRFTDSAGVHV 251
Query: 227 ----------------AAWDLRKSQPYECYSELD--FDIPIGKHGDCYDRYLVRMMEMRE 268
W Y + + + +G E
Sbjct: 252 DELSPEHYAQAITERAEPWSYMTFPYYHPHGDREGGGMFRVGPLARLNICDRAGTPEADR 311
Query: 269 SVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGE 328
+ RQ + + + ++ + V
Sbjct: 312 ELAAFRQVRGAGGMVTCSFHYHHARLIEILHALERIGMLLDEPDILDRHVRSEAGVNRPA 371
Query: 329 VYAAVEAPKGEFGVYLISDGGNKPYRCK-IRAPGYAHL-------QAMEFLCKGHQLAD- 379
EAP+G D R + A G +L Q +G + +
Sbjct: 372 GVGFCEAPRGTLFHDYEVDDDGIVNRVNLLIATGMNNLAMNRTIRQVAAEFIRGGEFTEG 431
Query: 380 ----VSAILGSLDIVFGEV 394
+ + + D
Sbjct: 432 ILNRIEHGVRAYDPCLSCA 450
>gi|282165079|ref|YP_003357464.1| coenzyme F420 hydrogenase subunit alpha [Methanocella paludicola
SANAE]
gi|282157393|dbj|BAI62481.1| coenzyme F420 hydrogenase subunit alpha [Methanocella paludicola
SANAE]
Length = 415
Score = 152 bits (384), Expect = 9e-35, Method: Composition-based stats.
Identities = 62/394 (15%), Positives = 115/394 (29%), Gaps = 29/394 (7%)
Query: 21 HGVLRLILELDGEIVE------RVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPM 74
G +L+LE+D + + P RG EK I K A R + P+
Sbjct: 13 EGHSKLVLEVDDSGIVTQGNYLSITPV-----RGFEKFITGKPMEFAPVASSRFCGICPI 67
Query: 75 NQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV-----GALTPP 129
A +E+ LGI P G +IR L + ++ SH L+ D +L
Sbjct: 68 THSTASVECIERALGIIPPKDGLVIRQLANMGNKLHSHPLHQLLILPDFVKDPNASLAAT 127
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+ + R+ + G +HA FR GG+ +++ I + + + + D
Sbjct: 128 VRIQKMRKIGQGIVDITGGEAIHAPNFRIGGMQKNMSEAAKRKIIEMLNQYEPIMKEHVD 187
Query: 190 LLTGN-RIFKQRNVNIGTVKLEDAWGWGFSGVM-IRGSGAAWDLRKSQPYECYSELDFDI 247
+ + + +G E G + + + + P Y
Sbjct: 188 FMVNTLKGNTEVPKKLGVHDRELMATDLNYGNSDLFETEYFYRFSEITPKSYYPGDIGME 247
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
R + R + + G ++ + + + A
Sbjct: 248 ACTSVPMIGGRTVEGGPRARMMRFKSFGAKD-CGDFDPRGAMAINIARAMEIPIA--LAR 304
Query: 308 MESLIHHFKLYTEGYHVPV-----GE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
LI E P G+ A EAP+G K
Sbjct: 305 ARELIQQLDTTKETLKKPPESGGDGKTLGVGANEAPRGVNVHTAKVK-DGKITYYNCLVA 363
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEV 394
++ + +G ++ + D
Sbjct: 364 TTWNIPTIGKATEGQHYKWAEYVVRAYDPCVSCA 397
>gi|197120245|ref|YP_002140672.1| methyl viologen-reducing hydrogenase, large subunit [Geobacter
bemidjiensis Bem]
gi|197089605|gb|ACH40876.1| methyl viologen-reducing hydrogenase, large subunit [Geobacter
bemidjiensis Bem]
Length = 473
Score = 152 bits (384), Expect = 9e-35, Method: Composition-based stats.
Identities = 65/410 (15%), Positives = 111/410 (27%), Gaps = 65/410 (15%)
Query: 47 RGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEI 106
RG EK++ + R+ V P A A++ G+ P L+R L
Sbjct: 42 RGFEKILIGMEADRMPHVTARICGVCPTAHHLAACNALDHAAGVTPPPAALLLRELMYLG 101
Query: 107 GRILSHLLNVTTQAMDV-------------------GALTPPLWGFEEREKLMVFYERAS 147
I SH L++ R E
Sbjct: 102 HIIHSHSLSIFVLQGPDLVLGLDADPAIRNIVGIVQANPELAKLALGLRSIGQKINEMVG 161
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND--------ISDLLTGNRIFKQ 199
G H GG+ + E ++ + W D L + L + +
Sbjct: 162 GRGTHPVTSVAGGIAFVLDKEKLKALKEWVDEARGVLPQVVPAVKGLLMRALEKHPEMGE 221
Query: 200 RN----VNIGTVKLEDA-------WGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
+ +GTV+ E +G G R + +
Sbjct: 222 KWIVSSFGMGTVQDEAVSLISGKLRVIDETGATRLEFGIEEYDRYLRESVVDWSYMKKVQ 281
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVN-------RLLGKNKVGPVSASDPKIVPPKR 301
+ G+ +D + M M + + + + RL G V + K++
Sbjct: 282 VELDGELHDYRVGPMARMNAARRFGTEMADAEYAEFARLGGAPCHATVFQTYAKLIEIVW 341
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPV----GEVYAAVEAPKGEFGVYLISDGGNKPYRCKI 357
A ++R+ E I K VPV G VEAP+G D +
Sbjct: 342 A-IERAGE--ILRDKAIRGETRVPVRFQGGRGVGHVEAPRGTLIHDYQIDERGIVRAANL 398
Query: 358 RAPGYAHLQ----AMEFLCKGHQL--AD-------VSAILGSLDIVFGEV 394
+ ++E + H + D V + D
Sbjct: 399 IVATQQNYSLINRSIEQSAQSHVIDRPDDRALMNAVEFSIRCYDPCLSCA 448
>gi|134045241|ref|YP_001096727.1| nickel-dependent hydrogenase, large subunit [Methanococcus
maripaludis C5]
gi|132662866|gb|ABO34512.1| nickel-dependent hydrogenase, large subunit [Methanococcus
maripaludis C5]
Length = 390
Score = 152 bits (384), Expect = 9e-35, Method: Composition-based stats.
Identities = 67/385 (17%), Positives = 120/385 (31%), Gaps = 24/385 (6%)
Query: 21 HGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +L+L +D E IV + RG E +++ K R+ + A
Sbjct: 14 EGHAKLVLNVDDEGIVTKAFYPNTTPVRGFETMLQGKPAAFGPIAVMRICGICQATHGIA 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILS----HLLNVTTQAMDVGALTPPLWGF-- 133
A+E + +EIP G ++R L R+ S HLL V A T + G
Sbjct: 74 SCEAIEHAIDMEIPKDGMILRELVGLGNRMHSHPLHHLLIVDDLLKPEEAGTLRVEGIKL 133
Query: 134 --EEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLL 191
R+ + + A G +H GG+ +I + C + N + ++L
Sbjct: 134 IQRMRKAGQMLVDVAGGEGIHPPNLMVGGMRTNITERAKAKLYYACREYEKDCNAMLEVL 193
Query: 192 TGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGK 251
+ ++ IG L S + R + ++ +E+
Sbjct: 194 EM--LMERYLEEIGIPDLGKHDLPYI------ASDTTFGNRDAINFKDITEVTAQRYYAD 245
Query: 252 HGDCYDRYLVRMMEMRESVKI--IRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
D ++ R + R + + G + +KRS+E
Sbjct: 246 FPDIAQTATNQIPFYRGNPAEGGPRARMIKYGNFKSAGGAMDINLARAMENFEAVKRSLE 305
Query: 310 SLIHHFKLYTEGYHV-----PVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
+ T EAP+ K + I A +
Sbjct: 306 LIDELNINGTTREIPNFSNAKEEYGIGVHEAPRAINTHMAKMGKDGKIEKYNIIAASTWN 365
Query: 365 LQAMEFLCKGHQLADVSAILGSLDI 389
A+E +G+ I+ + DI
Sbjct: 366 FPAVEKAIEGYHHQYAEVIMRAYDI 390
>gi|298506456|gb|ADI85179.1| methyl viologen-reducing hydrogenase, large subunit [Geobacter
sulfurreducens KN400]
Length = 473
Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats.
Identities = 58/444 (13%), Positives = 105/444 (23%), Gaps = 78/444 (17%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLH---RGTEKLIETKTFLQAVPYFDRLDYVAPMNQ 76
G R+ ++LD GL+ RG EK++ + R+ V P
Sbjct: 13 IEGHARVFIDLDD---TGALTAAGLVVNELRGFEKILTGMDADRMPLVTARICGVCPTAH 69
Query: 77 EHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV------------- 123
A A++ G+E P +L+R L I SH L++
Sbjct: 70 HLAATNALDNAAGVEPPPAAKLLRELMYMGHVIHSHCLSLFVLQGPDLVLGLDADPAVRN 129
Query: 124 ------GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWC 177
A + R E G H GG+ + + + W
Sbjct: 130 VVGVVQAAPDIAKKALQCRSIGQKINELVGGRGTHPVTSVAGGIAFVLDADRERQLNAWI 189
Query: 178 DSFPSALND--------ISDLLTGNRIFKQRN------------VNIGTVKLEDAWGWGF 217
+ + + + +L + Q+ + +
Sbjct: 190 NEARDLVLELAPVVKQLLMKMLDTHPAMLQQWVAPAWSVGTVKADGTLALVNGEIRAVDE 249
Query: 218 SGVM-------IRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESV 270
G + S + + + S +D D R V
Sbjct: 250 VGALKARFPSADYDSYMSESAVEFSYMKQVSFVDGDNRHDYRVGPLARLNVSERYGTPLA 309
Query: 271 KIIRQCVNRLLGKNKVGPVSASDPKIVPPKR--ADMKRSMESLIHHFKLYTEGYHVPVGE 328
R+ R +G+ +++ M H + G
Sbjct: 310 DREREEFIRTVGRPCHANALQPWARLIELLYCTERAGEIMADPAIHGETRVP-VTFSGGR 368
Query: 329 VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLA---------- 378
VEAP+G D + + + +A
Sbjct: 369 GVGHVEAPRGTLIHDYEIDENGIVRAANLIVATQQN-----YALINAMIAQAATSHVINR 423
Query: 379 -D-------VSAILGSLDIVFGEV 394
D V + D
Sbjct: 424 PDDQALLNAVEFGIRCYDPCLSCA 447
>gi|197124673|ref|YP_002136624.1| nickel-dependent hydrogenase large subunit [Anaeromyxobacter sp. K]
gi|196174522|gb|ACG75495.1| nickel-dependent hydrogenase large subunit [Anaeromyxobacter sp. K]
Length = 494
Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats.
Identities = 61/450 (13%), Positives = 111/450 (24%), Gaps = 77/450 (17%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD VE + L RG E+ + + + V P
Sbjct: 13 LEGHGKIEILLDDAGDVESAFLQVPEL-RGFERFCVGRPAEEMPQLTAHVCGVCPAAHHL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA------------- 125
A A++ L +E P +L R LY ++ HLL+
Sbjct: 72 AAVQALDALYAVEPPPAARLARALYYQLFIFEDHLLHYWYMGGPDFYAGSDAPAPMRNIL 131
Query: 126 -------LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
R + +G +H + PGG+ + + V+
Sbjct: 132 GVLAKVGADLGKRILSARREARELMAALAGRTVHPVFALPGGISKAVDAATVQRARALAP 191
Query: 179 SFPSALNDIS-----DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA------ 227
D +L + + V+ G + G
Sbjct: 192 GLVRFAEDTLASFRAAVLDHPEYSEALASDAYRVRCHSMGMVDADGRLAFLDGRLRVIDP 251
Query: 228 --------------AWDLRKSQP--YECYSELDFDIPIGKHG---------DCYDRYLVR 262
+ +P Y + L G R V
Sbjct: 252 AGDELATFAPRDWLDHLAERVEPWTYAKLTYLKSKGWTGFTEGDDTGLYRVGPLARLNVA 311
Query: 263 MMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP--KRADMKRSMESLIHHFKLYTE 320
+ RQ + LG ++ ++V +R E E
Sbjct: 312 RAMATPRAEAERQRLFEALGWPAHQTLAFHWARLVEALQAAETAQRLAEDPRLGDPHVRE 371
Query: 321 GYHVPVG--EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF-------- 370
G + AVEAP+G + +D + + ++
Sbjct: 372 VPAPLPGPRQGVGAVEAPRGTLFHHYAADADGILTAANLVVASQHNAAPVQVSVRKAAKG 431
Query: 371 LCKGHQLADV------SAILGSLDIVFGEV 394
L +G ++ D + D
Sbjct: 432 LIRGGKV-DAALLNRLEMAFRAYDPCNACA 460
>gi|189424612|ref|YP_001951789.1| nickel-dependent hydrogenase large subunit [Geobacter lovleyi SZ]
gi|189420871|gb|ACD95269.1| nickel-dependent hydrogenase large subunit [Geobacter lovleyi SZ]
Length = 479
Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats.
Identities = 63/437 (14%), Positives = 113/437 (25%), Gaps = 65/437 (14%)
Query: 20 AHGVLRLILEL-DGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + L + ++ + L RG EK++ + R+ V P
Sbjct: 21 IEGHAKVFVNLAEDGSLDNAGLVVNEL-RGFEKILVGMEANRMPHITARICGVCPTAHHI 79
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV--------------- 123
A + A++ G+ P L+R L I SH L++
Sbjct: 80 AASNALDHACGVVAPPAAMLLRELMYMGHIIHSHALSLFVLQGPDLVLGLDADPAIRNVV 139
Query: 124 ----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
R E G H GG+ + E + D
Sbjct: 140 GIVQANPEVAKKALRIRTVGQRLNEIVGGRGTHPVTSVAGGITFVLDSEKRAMLQSLVDE 199
Query: 180 FPSALNDI--------SDLLTGNRIFKQRN----VNIGTVKLEDAWGWGFSGVMIRGSG- 226
D+ +L + ++GTV + + +G
Sbjct: 200 GKQLAKDLAPVVKQLVVTMLERHPAMLTDWVAPSWSVGTVLDNRVSLIQGNIRAVDENGI 259
Query: 227 --AAWDLRKSQPYECYSELDFDIP-------IGKHGDCYDRYLVRMMEMRESVKIIRQCV 277
+ ++ Y S +DF G D L R+ M++
Sbjct: 260 TQVEFPVQDYDKYMVESVVDFSYMKRVGFKKGGLLHDYRVGPLARINAMQQFST--EWAN 317
Query: 278 NRLLGKNKVGPVSASDPKIVPPKR-ADMKRSME--SLIHHFKLYTEGYHVPV----GEVY 330
+ K+G + +M ++E I VPV G
Sbjct: 318 REMEEMLKLGGYPCHITLFQAYAKLVEMIWAIERADDILRDPAVNGETRVPVKFQGGRAV 377
Query: 331 AAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA----MEFLCKGHQL--AD----- 379
EAP+G D + + +E K H + +D
Sbjct: 378 GHSEAPRGTLIHDYEIDEDGIVRAANLIVATQQNYAIINRSIEHAAKSHVIGKSDDQALL 437
Query: 380 --VSAILGSLDIVFGEV 394
+ + D
Sbjct: 438 NAIEFSIRCYDPCLSCA 454
>gi|150402551|ref|YP_001329845.1| nickel-dependent hydrogenase large subunit [Methanococcus
maripaludis C7]
gi|150033581|gb|ABR65694.1| nickel-dependent hydrogenase large subunit [Methanococcus
maripaludis C7]
Length = 390
Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats.
Identities = 68/385 (17%), Positives = 120/385 (31%), Gaps = 24/385 (6%)
Query: 21 HGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +L+L +D E IV + RG E +++ K R+ + A
Sbjct: 14 EGHAKLVLNVDDEGIVTKAFYPNTTPVRGFETMLQGKAAAFGPIAVMRICGICQATHGIA 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSH----LLNVTTQAMDVGALTPPLWGF-- 133
A+E + +EIP G ++R L R+ SH LL V A T + G
Sbjct: 74 SCEAIEHAIDMEIPKDGMILRELVGLGNRMHSHPLHHLLIVDDLLKPEEAGTLRVEGIKL 133
Query: 134 --EEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLL 191
R+ + + A G +H GG+ +I + C + N + ++L
Sbjct: 134 IQRMRKAGQMLVDVAGGEGIHPPNLMVGGMRTNITERAKAKLYYACREYEKDCNAMLEVL 193
Query: 192 TGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGK 251
+ ++ IG L S + R + ++ +E+
Sbjct: 194 EM--LMERYLEEIGIPDLGKHDLPYI------ASDTTFGNRDAINFKDITEVTAQRYYAD 245
Query: 252 HGDCYDRYLVRMMEMRESVKI--IRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
D ++ R + R + + G + +KRS+E
Sbjct: 246 FPDIAQTATNQIPFYRGNPAEGGPRARMIKYGNFKSAGGAMDINLARAMENFEAVKRSLE 305
Query: 310 SLIHHFKLYTEGYHV-----PVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
L T EAP+ K + I A +
Sbjct: 306 LLDELNINGTTREVPNFYNAKEEYGIGVHEAPRAINTHMAKMGKDGKIEKYNIIAASTWN 365
Query: 365 LQAMEFLCKGHQLADVSAILGSLDI 389
A+E +G+ I+ + DI
Sbjct: 366 FPAVEKAIEGYHHQYAEVIMRAYDI 390
>gi|325957976|ref|YP_004289442.1| coenzyme F420 hydrogenase subunit alpha [Methanobacterium sp.
AL-21]
gi|325329408|gb|ADZ08470.1| coenzyme F420 hydrogenase, subunit alpha [Methanobacterium sp.
AL-21]
Length = 405
Score = 150 bits (380), Expect = 3e-34, Method: Composition-based stats.
Identities = 61/380 (16%), Positives = 116/380 (30%), Gaps = 15/380 (3%)
Query: 21 HGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L++++D E IV + RG EK++ K A R+ V P+ A
Sbjct: 14 EGHAELVMDVDDEGIVTKGRYFSITPVRGLEKIVTGKVPETAPVIVQRICGVCPIPHTLA 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVT----TQAMDVGALTPPLWGFEE 135
A++ LGIEIP + +R + + SH ++ + T E
Sbjct: 74 SVEAIDDSLGIEIPKAARQLREMTLAAHTVNSHAIHHFLIATDFVPENLMATAINSVSEI 133
Query: 136 REKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNR 195
R+ + + +G +H A R GG+ +I + + + ++ DL+ G
Sbjct: 134 RKTVQYVVDMVAGEGIHPADVRIGGMASNISETARKRLYARTKALIPKIDAHVDLMIGLI 193
Query: 196 IFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDC 255
K +G V + G + + + P Y + +
Sbjct: 194 ADKDLPDGLGVVNVPTLATHPLYGDRTKFDLDRFT--EIMPETWYDDPEVGKRACSTIPL 251
Query: 256 YDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHF 315
YD E R V + V + + + + + L
Sbjct: 252 YD------GRNVEVGPRARAAVFGSYNEKGVVAQHVARAMEMKTNVSKIVDLLAELDTSA 305
Query: 316 KLYTEGYHVPVGE-VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKG 374
+ + + A+E P+G K P ++ M +G
Sbjct: 306 PVMADYDVTGTNKLGIGAIEGPRGMDVHMAQI-ADGKTQFYSCLVPTTWNIPTMGPATEG 364
Query: 375 HQLADVSAILGSLDIVFGEV 394
++ + D
Sbjct: 365 FHHEFGPHVIRAYDPCLSCA 384
>gi|120403357|ref|YP_953186.1| hydrogen:quinone oxidoreductase [Mycobacterium vanbaalenii PYR-1]
gi|119956175|gb|ABM13180.1| Hydrogen:quinone oxidoreductase [Mycobacterium vanbaalenii PYR-1]
Length = 536
Score = 150 bits (380), Expect = 3e-34, Method: Composition-based stats.
Identities = 57/519 (10%), Positives = 123/519 (23%), Gaps = 134/519 (25%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
K F G G L + + ++ +V + RG E +++ K +
Sbjct: 3 SKLDLFVSPLG----RVEGDLDVRVTIEDGVVTSAWTEAA-MFRGFEIILQGKDPQSGLV 57
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
R+ + + + A A++ +P L+R + + S
Sbjct: 58 VCPRICGICGGSHLYKSAYALDTAWRTHMPHNATLVRNICQACETLQSIPRYFYALFAID 117
Query: 124 ---------------------GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRP---- 158
T G K + Y G H+++ P
Sbjct: 118 LTNKNYAKSALYDEAVRRFAPYVGTSYQPGVVLSAKPVEVYAIYGGQWPHSSFMVPGGVM 177
Query: 159 ---------------GGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFK----- 198
+ ND+ + N
Sbjct: 178 CAPTLSDVTRSIAILEHWNDAWLEGQWLGCSVDRWLENKTWNDVLAWVDENEAQYNSDCG 237
Query: 199 ------------QRNVNIGTVKLEDAWG-----------------WGFSGVMIRGSGAAW 229
+ +G + G SGV G +
Sbjct: 238 FFIRYCLDVGLDKYGQGVGNYLATGTYFEPSLYENPTIDGRNAALIGRSGVYADGRYFEF 297
Query: 230 D---------------LRKSQPYECYSEL-DFDIPIGKHGDCYDRYLVRMMEMRESVKII 273
D R P++ + D + + + + + ++ +
Sbjct: 298 DQANVLEDVTHSFYQGDRPLHPFDGETIPIDPEQGRKQGKYSWAKSPRYAVGDLGNIPLE 357
Query: 274 RQCVNRLLGKNKVGPVSASD-------------PKIVPPKRADMKR----------SMES 310
+ R + + D P ++ + A M +++
Sbjct: 358 AGPLARRMAAAGPDAAAHQDNDPLFGDIYNTIGPSVMVRQLARMHEAPKYYKWTRQWLDA 417
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH------ 364
L YT+ G+ + + EA +G +++ +K ++ P +
Sbjct: 418 LELKESFYTKPTEYAEGKGFGSTEAARGALSDWIVI-EDSKIKNYQVVTPTAWNIGPRDG 476
Query: 365 ---LQAMEFLCKGHQLADVS------AILGSLDIVFGEV 394
L +E G + D + S D
Sbjct: 477 SEVLGPIERALVGSPIVDAEDPVELGHVARSFDSCLVCT 515
>gi|332703275|ref|ZP_08423363.1| nickel-dependent hydrogenase large subunit [Desulfovibrio africanus
str. Walvis Bay]
gi|332553424|gb|EGJ50468.1| nickel-dependent hydrogenase large subunit [Desulfovibrio africanus
str. Walvis Bay]
Length = 460
Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats.
Identities = 53/416 (12%), Positives = 111/416 (26%), Gaps = 49/416 (11%)
Query: 20 AHGVLRLILELD-GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G +++ + VE+ + R E ++ + + R+ + + +
Sbjct: 31 VEGHGNIVVRIAADGTVEQCCWEVSEAPRFFEAMLLGRDYQDVHHITSRICGICSIGHQV 90
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEE--- 135
A A E+ L I + + +R L + SHLL++ A+ P E
Sbjct: 91 ASLQATEQALNIRVSEQTLALRKLALHAENLQSHLLHIGFLALPDYMGVPSTLHLAETHR 150
Query: 136 ---------REKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
R F G H F PGG + + + + L
Sbjct: 151 EEVLNLIACRRMSNEFSRLVCGRTTHPQRFVPGGFARLPSMDDLHQLRVLLAESLPGLGR 210
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ DL R + E S + + +P + Y ++ +
Sbjct: 211 VIDLCASLRDRVPAFE----RETEYIALVAPSEYPLYWGHIGSSMDDRRPVDQYEQMTRE 266
Query: 247 IPIGKHGDCYDRYL----------VRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKI 296
+ + + R + + R+ L
Sbjct: 267 YLVRQSTAKWARNKAESFMVGALSRFNLNHAQLTDGARKAAEVLGLAAPCHNPFLITLAQ 326
Query: 297 VPPKRADMKRSM---ESLIHHFKLYTEGYHVP--VGEVYAAVEAPKGEFGVYLISDGGNK 351
+ ++ S+ E+L+ + + G +AVE P+G D +
Sbjct: 327 LVECMHSVEDSLFLVEALLSRGLRHEASSKIKLQAGRGASAVEVPRGILFHAYEYDEQGR 386
Query: 352 PYRCKIRAPGYAH--------------LQAMEFLCKGHQLADVSAILGSLDIVFGE 393
P + L + L+ ++ + D
Sbjct: 387 VVSADCVIPTNQNHANIQKDMEALTPRLSGLPESEIERLLS---MLVRAYDPCISC 439
>gi|325294936|ref|YP_004281450.1| Hydrogen dehydrogenase [Desulfurobacterium thermolithotrophum DSM
11699]
gi|325065384|gb|ADY73391.1| Hydrogen dehydrogenase [Desulfurobacterium thermolithotrophum DSM
11699]
Length = 413
Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats.
Identities = 53/404 (13%), Positives = 108/404 (26%), Gaps = 37/404 (9%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G + + + E ++ + R E + + + + R+ + ++ A
Sbjct: 13 VEGHGAVNIVFENEKLKEIKLRFTEGPRFFEYITRERLYTEIPKIVSRICGICYVSHRLA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG------------ALT 127
A+E +EI +L+R L + SH L++ A+
Sbjct: 73 SISAIENAFEVEITPEIKLLRKLLVVGECLESHALHLYFLALPDYMGYPSTIAMAKDYPN 132
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
GF +E + G +H PGG E ++ + +
Sbjct: 133 VVKRGFLLKEIGNKIMKLIGGKTIHGENILPGGFKSVPSREQLQKVQEDLYKAIPEIKAT 192
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSG-----AAWDLRKSQPYECYSE 242
L K + ++ + + G ++L + YS
Sbjct: 193 ISLFDSFDYPKFNKEHPISLCINGDKFALLGDSLGLSDGTLFTKKEYELFIEEKTSTYST 252
Query: 243 LDFDIPIGKHG--DCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+ GK R + +R ++ ++ L ++
Sbjct: 253 AKYSTIKGKPFLIGPLARINHHINNLR---PETKEVISTLKTSFPSYNSLHANVARAIEM 309
Query: 301 RADMKRSM---ESLIHHFKLYTE-GYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCK 356
+ E LI E G Y EAP+G D +
Sbjct: 310 LELAFEGIEITEELIASTPFKREVEIKPKAGTGYGVKEAPRGTLYHRYTFDDSGRCISAN 369
Query: 357 IRAPGYAHLQAMEFLCKGHQ-----LADV------SAILGSLDI 389
I P +E + D+ ++ + D
Sbjct: 370 IITPTAQLQAIIEKDLADLIEFSPDVDDIELRKRAEMLIRAYDP 413
>gi|148252067|ref|YP_001236652.1| uptake hydrogenase large subunit [Bradyrhizobium sp. BTAi1]
gi|146404240|gb|ABQ32746.1| Uptake hydrogenase large subunit [Bradyrhizobium sp. BTAi1]
Length = 532
Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats.
Identities = 67/501 (13%), Positives = 111/501 (22%), Gaps = 128/501 (25%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + +++ +V L RG E ++ K + R + +
Sbjct: 16 VEGDLDVRVDIQNGVVVNA-WTQAELFRGFEVILRDKDPQAGLVVTPRACGICGASHLTC 74
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKL 139
A A++ E+P L R L + S + M E +
Sbjct: 75 AAWALDTAWKTEVPRNAILARNLGQIAESLQSLPRHHYGLFMIDYTHKNYSRSKYYEEAV 134
Query: 140 MVF---------------------YERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
+ Y G H+++ PGGV V +
Sbjct: 135 RRWSPYTGTNYELGVTISGRPVEIYALLGGQWPHSSFMVPGGVMCAPTLTDVTRAWSILE 194
Query: 179 SFPSAL-------------------NDISDLLTGNRIF-----------------KQRNV 202
F +D L +
Sbjct: 195 HFRRNWMEPVWLGCSFERYEEIKSYDDFMAWLDERPEHANSDLGMFWRMSQDIGVDKYGK 254
Query: 203 NIGTVKLEDAWGW-----------------GFSGVMIRGSGAA-----WDLRKSQPYECY 240
G SGV S R+ + Y
Sbjct: 255 GHGKYVSWGYLPHEDKYNRPTIEGRNAAVIMKSGVYDGASDTHKLMDQIHTREDLMHAWY 314
Query: 241 SELDFDIP-------------IGKHGDCYDRYLVRMMEMR-ESVKIIRQCVNRLLGKNK- 285
E P + + R E+ + RQ + +
Sbjct: 315 DEQSGKHPFDRVTKPVGKNPVDHTKQYSWATAVRHDQNGRLEAGPLARQLIAGGPHGERW 374
Query: 286 --------------VGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP---VGE 328
G + + R E + F+L Y P G
Sbjct: 375 QHHDPLVLDMYRKLGGASVMLRHFARMHEGVKLYRQAEHALREFRLNDPWYVKPTEKDGR 434
Query: 329 VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLAD 379
+ A EA +G ++ G K +I P + L +E G +AD
Sbjct: 435 GWGATEAIRGALCHWIEVQG-GKIKNYQIITPTTWNVGPRSDRDELGPIEQALIGTPVAD 493
Query: 380 ------VSAILGSLDIVFGEV 394
V + S D
Sbjct: 494 VNDPVEVGHVCRSYDSCLVCT 514
>gi|198282986|ref|YP_002219307.1| Hydrogen:quinone oxidoreductase [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218665568|ref|YP_002425190.1| hydrogenase-2, large subunit [Acidithiobacillus ferrooxidans ATCC
23270]
gi|198247507|gb|ACH83100.1| Hydrogen:quinone oxidoreductase [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218517781|gb|ACK78367.1| hydrogenase-2, large subunit [Acidithiobacillus ferrooxidans ATCC
23270]
Length = 532
Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats.
Identities = 70/501 (13%), Positives = 122/501 (24%), Gaps = 128/501 (25%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + +++ +V L RG E ++ K + R + +
Sbjct: 16 VEGDLDVRVDIRDGVVVEAYTQA-ELFRGFEVILRDKDPQAGLVVTPRACGICGASHLTC 74
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILS----H--LLNVTTQAMDVGALTPPLWGF 133
A A++ E+P L R + + + S H L + +
Sbjct: 75 AAWALDTAWQTEVPRNAILARNIGQLVESLQSMPRHHYGLFMIDMVNENYRHGKFYDEAV 134
Query: 134 E---------------EREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
K + Y G H++Y PGGV V +
Sbjct: 135 RRYAPFTGTNYEIGVTISGKPVEIYALFGGQWPHSSYMVPGGVMCAPTLSDVTRSWSILE 194
Query: 179 SFPSAL-------------------NDISDLLTGNRIFKQRNVNIGTVKLED---AWGWG 216
F + +D L ++ + ED G
Sbjct: 195 YFRTNWLEPVWLGCSMERYEQIKSYDDFMAWLNERPEHADSDLGMYYRISEDVGLMKFGG 254
Query: 217 FSGVMIRGSGAAWDLRKSQP------------------------------------YECY 240
G + + R P + Y
Sbjct: 255 GLGKYVSWGYIPHEDRYQHPTIDTRQQSVVMKGGVYDAKADKFHPMNQSFTRESTTHGWY 314
Query: 241 SELDFDIP----IGKHGDCYDRYLVRMMEM-----------RESVKIIRQCVNRLLGKN- 284
E + + DR E+ + RQ +
Sbjct: 315 DEGSNPVHPFNRTTRPMQSNDRDFSGAYTWCTEVAHEQLGRMEAGPLSRQLIAGGDHGES 374
Query: 285 -------------KVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP---VGE 328
K+GP + + R +E + F+L Y P G+
Sbjct: 375 WQHSDPFILDVYKKMGPSLWLRHFARMHEVVKVYRQIEHCLREFRLNEPFYIKPRERDGQ 434
Query: 329 VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQL-- 377
+ A EA +G ++ G K +I AP ++ +E G +
Sbjct: 435 GWGATEAMRGALAHWIEVKG-GKISNYQIIAPTTWNVGPHDAQGGRGPIEEALVGTPITN 493
Query: 378 -AD---VSAILGSLDIVFGEV 394
AD V + S D
Sbjct: 494 PADPVEVGHVARSFDSCLVCT 514
>gi|111221270|ref|YP_712064.1| [NiFe] uptake hydrogenase large subunit [Frankia alni ACN14a]
gi|111148802|emb|CAJ60480.1| [NiFe] uptake hydrogenase, large subunit [Frankia alni ACN14a]
Length = 537
Score = 149 bits (377), Expect = 6e-34, Method: Composition-based stats.
Identities = 59/515 (11%), Positives = 122/515 (23%), Gaps = 131/515 (25%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
+ +N P G L + + +D +V + RG E ++ K + R
Sbjct: 5 TVDLNVSPM-GRVEGDLDVRVTIDDGVVASAWTEAA-MFRGFEIILRGKDPQAGLIVTPR 62
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV---- 123
+ + + + A A++ E+P LIR + + S
Sbjct: 63 ICGICGGSHLYKSAYALDVAWQTELPPNATLIRNIAQACETLQSIPRCFYALFAIDLTNP 122
Query: 124 -----------------GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRP-------- 158
+ G K + Y G H+++ P
Sbjct: 123 RYASSQLYPEAVRRFAPFTGSSYGPGVVLSAKPIEVYAIFGGQWPHSSFMVPGGVMCAPT 182
Query: 159 -----------GGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQ-------- 199
+ + D+ + N
Sbjct: 183 LADVTRSIAILEHWKTEWLEKQWLGCSVDRWLANRTWADVLAWIYENEAQHDSDCGFFLR 242
Query: 200 ---------RNVNIGTVKLEDAWG-----------------WGFSGVMIRGSGAAWDLRK 233
IG + G SGV GS +A+D +
Sbjct: 243 YCLDIGLDGYGQGIGNYLATGTYFSPEKYARPTIEGRNAALIGRSGVYAGGSYSAFDQAR 302
Query: 234 ---------------SQPYECYSELDFDIPIGKHG-DCYDRYLVRMMEMRESVKIIRQCV 277
P++ + + + G + + + V + +
Sbjct: 303 VREDVTHSFYAGTSARHPFDGETNPIDPVRGREQGKYSWAKSPRYDVPNLGYVPLEAGPL 362
Query: 278 NRLLGKNKVGPVSASD-------------PKIVPPKRADMKR----------SMESLIHH 314
R + G D P ++ A M ++ + H
Sbjct: 363 ARRIAAAAPGAADHQDDDPLFGDILDAIGPSVMVRLLARMHEAAKYYQWVRAWLDQIDLH 422
Query: 315 FKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL--------- 365
+ G + + EA +G +++ K ++ P ++
Sbjct: 423 EPFHATPVQRADGRGFGSTEAARGSLSDWIVL-ENGKIANYQVVTPTAWNIGPRDGDGTP 481
Query: 366 QAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
+E G +AD + + S D
Sbjct: 482 GPIEAALVGTPVADPADPVELGHVARSFDSCLVCT 516
>gi|149194375|ref|ZP_01871472.1| Nickel-dependent hydrogenase, large subunit [Caminibacter
mediatlanticus TB-2]
gi|149135550|gb|EDM24029.1| Nickel-dependent hydrogenase, large subunit [Caminibacter
mediatlanticus TB-2]
Length = 386
Score = 149 bits (377), Expect = 7e-34, Method: Composition-based stats.
Identities = 59/390 (15%), Positives = 119/390 (30%), Gaps = 33/390 (8%)
Query: 21 HGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAY 80
G L + I++ V+ +RG E+ + + FL A+ R+ + A
Sbjct: 12 EGEAELKIYQKDGIIDFVEI-FFWQYRGIEQYLVNRHFLDALVINPRICGICGHAHLLAT 70
Query: 81 ALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVT--TQAMDVGALTPPLWGFEEREK 138
A A+E L ++I + +++R + S + I +H+ + + L +K
Sbjct: 71 AKAIENALNLKITKKAEILRDITSGLEIIQNHIKWFYLTLYPTQIKDKSYILKALNIVKK 130
Query: 139 LMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFK 198
+ G H +Y PGGV D+ + I + I D + +
Sbjct: 131 ISKIIAIIGGQFPHNSYIIPGGVTCDLTNLDIIKIKNLLKKLREDIYTIIDENGKSHDLE 190
Query: 199 QRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDR 258
+ N+ + + G + F + + +
Sbjct: 191 KFFENLPKNIGKSLNKFLVLGDNLFFK---------------PNGTFTNVKEFSNNSFFK 235
Query: 259 YLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK------RSMESLI 312
++ E E + R N+ + + +I + + +E L
Sbjct: 236 NVLYNEEYYEVGPLARNLQNKTINTIYEKYQDSIYTRIFARLYEILLIINYLIKEIEDLD 295
Query: 313 HHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL------- 365
K + G + +EAP+G + K I P +L
Sbjct: 296 ITQKSFLNYKKRTCGSGVSVIEAPRGSLIHKIKI-ENEKIKFYDIVMPSQFYLSNGTKEK 354
Query: 366 -QAMEFLCKGHQLADVSAILGSLDIVFGEV 394
A + ++ + I DI V
Sbjct: 355 PSASQMALIREEIKFIDTIFKCFDICAVCV 384
>gi|282165122|ref|YP_003357507.1| coenzyme F420 hydrogenase subunit alpha [Methanocella paludicola
SANAE]
gi|282157436|dbj|BAI62524.1| coenzyme F420 hydrogenase subunit alpha [Methanocella paludicola
SANAE]
Length = 404
Score = 149 bits (376), Expect = 8e-34, Method: Composition-based stats.
Identities = 57/384 (14%), Positives = 114/384 (29%), Gaps = 20/384 (5%)
Query: 21 HGVLRLILELDGEIVERVDPHIGLL-HRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G + +L++D E + + + ++ RG EK + + A R + P A
Sbjct: 14 EGHGKFVLDVDEEGIVKKGNFLSMVTVRGFEKFLVGRGMEFAPVATSRFCGLCPPTHATA 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLL-NVTTQAMDVGALTPPLWGF----E 134
+ AVE+ +G+ P G L+R L + + H L V V +
Sbjct: 74 SSEAVERSIGLSPPRHGLLLRELCNIGNHLHDHPLQQVLILPDFVKDPEKYREALARIQK 133
Query: 135 EREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGN 194
R G +H+ Y R GG++ +I + + F S +
Sbjct: 134 MRRIGQYICNVVGGEAIHSPYIRVGGMYTNISEAARHKLTAMLEEFTQYHEAQSRFMEEA 193
Query: 195 RIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGD 254
+G ++ G + K PY +
Sbjct: 194 FSAAGVPPGLGVNDVDMMATDLIYGR------SDVFEEKYFPYYSELLPANYYGKEIGVE 247
Query: 255 CYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHH 314
R + ++ E + R + + G + G ++ + ++ ++R +E L
Sbjct: 248 ACTRIPLLRGKIVEVGPVAR--LWKYKGWREKGTMALNRARLTEISL-RIERGLEILREL 304
Query: 315 FKLYTEGYHVPV---GE-VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
G EAP+G + + K ++ +
Sbjct: 305 NTRAHTLNRPVSYGIGRLGIGVNEAPRGTNVH-ITRVEDGRITYYKAMPATMWNISTIGK 363
Query: 371 LCKGHQLADVSAILGSLDIVFGEV 394
+G ++ S D
Sbjct: 364 STEGFHYKWAQWVMRSYDPCISCA 387
>gi|219850769|ref|YP_002465201.1| coenzyme F420 hydrogenase, subunit alpha [Methanosphaerula
palustris E1-9c]
gi|219545028|gb|ACL15478.1| coenzyme F420 hydrogenase, subunit alpha [Methanosphaerula
palustris E1-9c]
Length = 455
Score = 149 bits (376), Expect = 9e-34, Method: Composition-based stats.
Identities = 70/424 (16%), Positives = 122/424 (28%), Gaps = 51/424 (12%)
Query: 21 HGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +L+L++D I+ER D RG EKL KT Q R+ + P+ A
Sbjct: 14 EGHSKLVLKVDDAGIIERGDWLSITPVRGVEKLAIGKTMDQVPKIASRVCGICPVAHTIA 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLN----------------VTTQAMDV 123
A+E +G IP L+RV+ R S L+ + + +
Sbjct: 74 ATEAMEASIGCIIPDDAYLLRVIMQCANRAHSIALHNILSLPDMYLPGTDTKINPFSPEE 133
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS---F 180
+ RE E A G +H + R GG+ ++ P +
Sbjct: 134 PVRSVAKRIQRIREISQTIGEIAGGEAVHPSNTRVGGMFVNVSPRAKAKMYDLAKEGLAL 193
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKL------EDAWGWGFSGVMIRGSGAA----WD 230
+ + N + G G+ + + S WD
Sbjct: 194 ARDQMEFMIAIFRNYQKRDWAEVGGMKVDIPETLGYHNQGYMATDPIYGSSSLDENPTWD 253
Query: 231 L------RKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRE---SVKIIRQCVNRLL 281
+ R Y E+ D P G + +M Q V
Sbjct: 254 ISRFNEVRPWDWYMGEMEVTDDYPDYPVGGTTAKGTKTWPQMEANTGVPLYDGQPVEVGP 313
Query: 282 GK--------NKVGPVSASDPKIVPP--KRADMKRSMESLIHHFKLYTEGYHVPVGE-VY 330
++ G + + + + +++L + K++ + G +
Sbjct: 314 RARMVTFKNFDEKGTIGQQVARQMEYTDSFYKLIECLDALNTNGKVFVDELPTGDGSLGW 373
Query: 331 AAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIV 390
AA EAP+G + K + P + G I+ D
Sbjct: 374 AANEAPRGSDVHLARVN-NGKVEFFSMLVPTTWNFPTCSRALTGAPWQLAEVIMRGYDPC 432
Query: 391 FGEV 394
Sbjct: 433 VSCA 436
>gi|117925792|ref|YP_866409.1| nickel-dependent hydrogenase, large subunit [Magnetococcus sp.
MC-1]
gi|117609548|gb|ABK45003.1| nickel-dependent hydrogenase, large subunit [Magnetococcus sp.
MC-1]
Length = 567
Score = 148 bits (375), Expect = 1e-33, Method: Composition-based stats.
Identities = 64/540 (11%), Positives = 117/540 (21%), Gaps = 167/540 (30%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQ--- 76
G LR+ +E+D V + G + RG EK++ + L+A Y R V
Sbjct: 13 IEGHLRIDVEVDNGRVTKA-WSSGQMWRGIEKILVGRDPLEAWTYTQRFCGVCTTVHAIT 71
Query: 77 --------------------------------------EHAYALAVEKLLGIEIPIRGQ- 97
+ V+ + ++ R
Sbjct: 72 SVRAVENALGMEVPVNAQLIRNIIQTAHAIQDHIVHFYHLSAVDWVDVVSALKADPRAAA 131
Query: 98 --------LIRVLYSEIGRILS--------------------HLLNVTTQAMDVGALTPP 129
E+ + + H +++ A+
Sbjct: 132 QLAESLSDWSLNGVHEMTAVQNRLKKFVESGQLGPFATGFWGHPEMKLPPEVNLMAVAHY 191
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVH----QDIPPELVEDIGCWCDSFPSALN 185
L E + G H GGV D P L + + F L
Sbjct: 192 LQALEVQNYCNKIVAILGGKSPHIQNVAVGGVSNSISHDAPSVLNMERLMFIKGFMDKLE 251
Query: 186 ------DISDLLTGNRIFKQRNVNIGTVKLEDAWGWG----------------------- 216
+ D+ + G V +
Sbjct: 252 KFIHSVYMVDVPAVGAFYLDWTKVGGGVINYLSVPDCPQDSKGTIFDLPGGYIKGGDLST 311
Query: 217 -----FSGVMIRGSGAA--------WDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRM 263
G G A + P+E +E +++ + +
Sbjct: 312 FKPIKAHGDKYFQEGVAESSKHAWYHGDKTLHPWEGETEPNYNDFNEDGQYSWIKAPTFY 371
Query: 264 MEMRESVKIIRQCVNRLLGKNKVGPVSASD------------------------PKIVPP 299
E E + V+ G +
Sbjct: 372 GERAEVGPLANVLVSVAAGHEPAKRHLNTAINTLKSVGRLQDVPLEALNSTIGRHAARAV 431
Query: 300 KRADMKRSMESLIH--------HFKLYTEGYHVPVGE--VYAAVEAPKGEFGVYLISDGG 349
+ A M +++ H +P GE + EAP+G +++
Sbjct: 432 RCAVMMDTLKDQWHALVNNIGTGDLETFNPPTMPKGEVRGFGFHEAPRGALSHWVVI-EK 490
Query: 350 NKPYRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
K + P + E +AD V + S D
Sbjct: 491 GKIKNYQAVVPSTWNAGPRAENGDPGPYEMSLLDTPVADPEKPLEVLRTVHSFDPCIACA 550
>gi|253700867|ref|YP_003022056.1| nickel-dependent hydrogenase large subunit [Geobacter sp. M21]
gi|251775717|gb|ACT18298.1| nickel-dependent hydrogenase large subunit [Geobacter sp. M21]
Length = 423
Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats.
Identities = 68/410 (16%), Positives = 119/410 (29%), Gaps = 41/410 (10%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G + + +G VERV+ + R E L+ K++L+ R+ + +
Sbjct: 12 VEGHGSVKVYREGSRVERVELCLADSPRLFEALLIGKSYLEVPEIVCRICSLCSTVHKVT 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNV------------TTQAMDVGALT 127
LAVE GIE+ L R L + G I H L++ + A
Sbjct: 72 ALLAVENAFGIEVSETTALTRELIMQGGMIQDHALHLYCLLLPDLLGVPGVTGLAQKAPE 131
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
G + + E G +H R GG+ Q + + + + +S A D
Sbjct: 132 LLKTGLGIKRVGNMIQETVGGRLIHPVNIRLGGLGQRVGKKELLRLRHELESVLPACRDA 191
Query: 188 SDLL-TGNRIFKQR------NVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
T + G + G SG + + +
Sbjct: 192 YRFFRTPFPFPELPSANALAVEPRGAGRPAAIRCRMAGGESFAVSG--YREAVKESVLPH 249
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
S + +GK + + +R S K + + + + +
Sbjct: 250 SNAKYSKVMGKEATVGALARLALG-VRLSAKAQG-VFDGVKHEILGRDIRGNSLAQAIEL 307
Query: 301 RADMKRSMESLIHHFKLYTEG------YHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYR 354
+R++E LI G G AA EAP+G D
Sbjct: 308 CDAAERAIE-LIDRLLDENPGAPGDVEPVPRAGSGSAACEAPRGLLIHSYGFDSDGICTG 366
Query: 355 CKIRAPGYAHLQAME----FLCKGH-------QLADVSAILGSLDIVFGE 393
+ P + AM L +G + ++ D
Sbjct: 367 ADVVTPTALNQGAMARDLLALARGMEGEETKKMTTALERLIRCYDPCISC 416
>gi|11498976|ref|NP_070209.1| F420-nonreducing hydrogenase (vhtA) [Archaeoglobus fulgidus DSM
4304]
gi|2649192|gb|AAB89864.1| F420-nonreducing hydrogenase (vhtA) [Archaeoglobus fulgidus DSM
4304]
Length = 569
Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats.
Identities = 65/479 (13%), Positives = 116/479 (24%), Gaps = 119/479 (24%)
Query: 20 AHGVLRLILELD------GE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
G LR+ L + GE V + G L RG E ++ + A R+ V
Sbjct: 15 IEGHLRVELSPEKLKTSTGEWDVVKEAYCSGTLFRGWETILRGRDPRDAWIITQRICGVC 74
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ------------- 119
P A A+E + LIR + I H+++
Sbjct: 75 PAPHAEASIQAIEAAFNVTPTPVAVLIRNVLHGAYYIYDHIIHSYILLGPELGVVCKYPP 134
Query: 120 ----------AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL 169
+G + + E + K G H PGG+ +
Sbjct: 135 MVPPALGKEGVSKLGIGSSYVGALEIQRKANEIVAIWGGKFPHHQSEYPGGMAVRPTEDR 194
Query: 170 VEDIGCWCDSFPSA-----LNDISDLLTGNRIFKQ---------------------RNVN 203
+ + D +LL N + ++
Sbjct: 195 IASSLARMFEIWRWVAETMVKDFYNLLEANEKVGEAVSSLLDINFRGLQDVGASTGNFLS 254
Query: 204 IGTVKLEDAWGWG---FSGVMIRGSGAAW-----------DLRKSQPYECYSELD----- 244
G + + R S D+ K Y YS D
Sbjct: 255 YGLFPDHENYDDWLSVLDSPSKRSSALIHAGAWDGSSKPLDISKIAEYVRYSWYDNESGL 314
Query: 245 --------FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQC----------VNRLLGKNKV 286
+ + ++ E + R + +
Sbjct: 315 NPKDEDAPKPDKNKSEAYSWLKAPRYDGKVYEVGPLARMLNTYGTRWKIPIRNPVTGEDH 374
Query: 287 GPVSAS--DPKIVPPKRAD------------MKRSMESLI--HHFKLYTEGYHVPVGEVY 330
G +PK R + + L + K+ GE +
Sbjct: 375 GYFEYEVLNPKGSVIDRLAARVALTILTSQKVFEWLLELKSYTNQKVTNYRNVPKEGEGF 434
Query: 331 AAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLADV 380
+AP+G Y+ +K + P +L +E +G L ++
Sbjct: 435 GLWDAPRGGLLHYIKVK-DHKIANYQCVVPSTWNLSPRDDFGQPGPVETALEGTWLPNL 492
>gi|254458959|ref|ZP_05072382.1| nickel-dependent hydrogenase, large subunit [Campylobacterales
bacterium GD 1]
gi|207084230|gb|EDZ61519.1| nickel-dependent hydrogenase, large subunit [Campylobacterales
bacterium GD 1]
Length = 419
Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats.
Identities = 68/415 (16%), Positives = 119/415 (28%), Gaps = 45/415 (10%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +L GE ++ VD R EK++E K+ L A+ R+ + A
Sbjct: 8 IEGEAKLNFSFAGEEIDFVDIEFMTA-RNIEKILEGKSALDALVINPRVCGICGHAHLIA 66
Query: 80 YALAVEKLL-GIEIPIRGQLIRVLYSEIGRILSHLLNVT-TQAMDVGALTPPLWGFEERE 137
A+E IEI + ++IR L I +H T G L +
Sbjct: 67 TVKALEDCYENIEISKKAEIIRELTLTFELIQNHFKWFYLTMRPLFGKKQEVLKATYPTQ 126
Query: 138 KLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA-------------- 183
+ G H +Y GGV DI + I + +
Sbjct: 127 LMAKAIAVFGGQYPHTSYAIVGGVVCDITEIDIIKIKHYIEETIKFFETNLVQADTKDFL 186
Query: 184 -LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+++ +L N I K G + + G + + KS
Sbjct: 187 VCDNVDKVLKKNGDLPDILREI-KKKKYLDHGKSYDRFIAFGENSYFTKGKSHKTITTHN 245
Query: 243 LDFDIPIGKHG-DCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDP--KIVPP 299
+ D + + + + + E + R +N++ + +I+
Sbjct: 246 ISIDYVKEQDNLNSLAKNVTYKDKYYEVGPLARAMINKVPLVKDSHRRYGDNIFSRIIAR 305
Query: 300 KRADM------KRSMESLIHHFKLYTEG---YHVPVGEVYAAVEAPKGEFGVYLISDGGN 350
K +E L Y E +AVEA +G +
Sbjct: 306 VCEIPQLLNHSKELLEKLDLSEPSYIEPNIDISQINASGESAVEAARGSLIHKVEL-ENG 364
Query: 351 KPYRCKIRAPGYA--------HLQAMEFLCKGHQLADV---SAILGSLDIVFGEV 394
+I P +L + G L DV + + D+
Sbjct: 365 IIKNYEIITPTQWNLGNGTRENLGVSQQAMVG--LKDVKTAELVFKTFDVCSVCT 417
>gi|319789464|ref|YP_004151097.1| nickel-dependent hydrogenase large subunit [Thermovibrio
ammonificans HB-1]
gi|317113966|gb|ADU96456.1| nickel-dependent hydrogenase large subunit [Thermovibrio
ammonificans HB-1]
Length = 413
Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats.
Identities = 67/403 (16%), Positives = 125/403 (31%), Gaps = 35/403 (8%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G + L+L+G V+ + R E + + F + R+ + ++ A
Sbjct: 13 VEGHGAVELKLEGSQVKEIKLSFTEGPRFFEFITRERLFSEIPKIVSRICGICYVSHRLA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG------------ALT 127
A A+E E+P +L+R L + SH L++ A+
Sbjct: 73 AAKAIEDAFKTEVPEAVELMRRLLIVGEFLESHALHLYFLALPDYMGYGSAVEMAKDYPN 132
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
GF+ +E + G +H GG + E +E + W L
Sbjct: 133 VVRRGFKIKEVGNRIMKLLGGKTVHGEAIVAGGFTRAPEKEELELVIDWLTEILPELEAT 192
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQ--------PYEC 239
+ L F+ + V LE+ S + +G + ++ + PY
Sbjct: 193 AFLFDSLEYFELESPVELEVSLENPVPSEPSDRVAVSNGLKFTKQEFEHFIKEEVSPYST 252
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
+ + G E+ +++ + NR +N + A ++V
Sbjct: 253 AKRSTVNGKAFRIGPLARVNRGEDFYTEETKEVLSRLKNRFPSQNPLLANLARAVEMVEL 312
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVGE--VYAAVEAPKGEFGVYLISDGGNKPYRCKI 357
+K + E LI + + GE Y EAP+G + I
Sbjct: 313 AHRGVKYA-EKLIELLP-FEPKAELEPGEFGGYGVKEAPRGVLYHHYRFSPSGHCIGANI 370
Query: 358 RAPGYAHLQAMEFLCKG-----HQLAD------VSAILGSLDI 389
P +E K L D ++ + D
Sbjct: 371 VTPTAQLQACIEEDLKALAEKFSYLPDSQLKKRAEMLIRAYDP 413
>gi|195953773|ref|YP_002122063.1| nickel-dependent hydrogenase large subunit [Hydrogenobaculum sp.
Y04AAS1]
gi|195933385|gb|ACG58085.1| nickel-dependent hydrogenase large subunit [Hydrogenobaculum sp.
Y04AAS1]
Length = 439
Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats.
Identities = 58/432 (13%), Positives = 117/432 (27%), Gaps = 62/432 (14%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G + L LE + + +G +R +++ K +L ++ R+ + A
Sbjct: 11 LEGEVELKLEYSKGKIAKAHI-LGTSNRDFSSILKAKPYLDSIILIPRVCGICGHAHLMA 69
Query: 80 YALAVEKLLGIEIPI-----RGQLIRVLYSEIGRILSHLLNVTTQAMDV----------- 123
A+E E + L+R + I +H+ M
Sbjct: 70 SVKAIEDAYKNECSDFHLSTKASLVRYITLLSEMIQNHIRWFYAYFMSEIPKLDRNMVDY 129
Query: 124 --GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
G + G H +Y PGG+ D + +C
Sbjct: 130 LPFDGEKWRRGIAISNYPIKIIALFGGQWPHNSYAVPGGITSDFTYYELNAAKSFCKELL 189
Query: 182 SALNDISDLL------------TGNRIFKQRNVNIGTVKLEDAWGWGF------SGV--M 221
++ + N I D + G +G
Sbjct: 190 KSIETYIIGISIDKYLSFSKDELLNHKEGDIGDFIRLSSTFDFFHKGIAYKRFLTGGSIK 249
Query: 222 IRGSGAAWDLRKSQPYEC----YSELDFDIPIGKHGDCYDRYLVRMMEMRE----SVKII 273
A ++ + ++ E +F G Y++ + S +
Sbjct: 250 GYVDAAVFENGIKESFDVKNIDTKEHEFKKIKEITGAVYNKKRFETGPLARKINSSNSLF 309
Query: 274 RQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV--GEVYA 331
+ + + ++ D + +K +++++ Y + G+
Sbjct: 310 LELLEEFGDSLFLRVMARVDEIVSLTLL--IKDALDAIDIRKPSYIKPPIKEPFTGKGVG 367
Query: 332 AVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL-------QAMEFLCKGHQLADVSAI- 383
VEA +G + KI P +L + G +DV A
Sbjct: 368 IVEAARGTLIHEINI-ENGFVKDYKIVTPTLWNLGNYDEDMSPAQKSIVG-LSSDVEAYL 425
Query: 384 -LGSLDIVFGEV 394
L S D+ V
Sbjct: 426 SLRSFDVCASCV 437
>gi|284162646|ref|YP_003401269.1| nickel-dependent hydrogenase large subunit [Archaeoglobus profundus
DSM 5631]
gi|284012643|gb|ADB58596.1| nickel-dependent hydrogenase large subunit [Archaeoglobus profundus
DSM 5631]
Length = 489
Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats.
Identities = 53/448 (11%), Positives = 106/448 (23%), Gaps = 74/448 (16%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD V I + RG E + + + V
Sbjct: 15 LEGHGKIAIFLDDKGNVADAFYQI-VEFRGYETFLRGLPIEEVPRTVSTICGVCRAVHHT 73
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA------------- 125
A A + + G+E + IR LY + H + +
Sbjct: 74 ASTKASDGVYGVEPTETAKKIRELYLNAHYVEDHCAILYALGLPDFVVGIEADPAERNLV 133
Query: 126 -------LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
+ ++R + E G +H PGG + I + ++I
Sbjct: 134 GLIKKVGVDVGKTVLKKRFAAVKVLEMLGGKPIHPVAGLPGGWSKRITEDERKEIEALAK 193
Query: 179 SFPS----ALNDISDLLTGNRIFKQR-NVNIGTVKLEDAWGWGFSGVMIRGSG------- 226
L D++ N + + V + +G + G
Sbjct: 194 EMVELGELTLQVFEDVILKNEKLLELITADYYRVVVNYLGTVDDAGKVNYYDGWQVGIDT 253
Query: 227 ---------------------AAWDLRKSQPYECYSELDFDIPIGKHGDC---YDRYLVR 262
W K ++ F G R +
Sbjct: 254 KGNEVFRFKGKDYLNYIAERVVPWSYVKMPYFKQLGWKGFVDGEGTSLYSVGPLARCNIG 313
Query: 263 MMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP--KRADMKRSMESLIHHFKLYTE 320
M ++ + + + L + ++ + V + +
Sbjct: 314 DMNTPKAKEAQEKMFDVLKERPIHYIMAYHWARAVELLNAAERVLELAQDPEITSPDVRA 373
Query: 321 GYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK------- 373
GE +EAP+G + +D + + + K
Sbjct: 374 ELGEVTGEGVGIIEAPRGTLIHHYKTDENGIVTDANLIVATTHNHAPINIAIKKAAQHFI 433
Query: 374 --GHQLAD-----VSAILGSLDIVFGEV 394
++ D V DI
Sbjct: 434 QENKEINDKLLNYVEIAYRPYDICQACA 461
>gi|197118351|ref|YP_002138778.1| hydrogenase subunit alpha [Geobacter bemidjiensis Bem]
gi|197087711|gb|ACH38982.1| hydrogenase, alpha subunit, putative [Geobacter bemidjiensis Bem]
Length = 423
Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats.
Identities = 65/413 (15%), Positives = 121/413 (29%), Gaps = 45/413 (10%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G + + +G VERV+ + R E L+ K++L+ R+ + +
Sbjct: 12 VEGHGSVKVYREGSRVERVELCLTDSPRLFEALLVGKSYLEVPEIVCRICSLCSTVHKVT 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNV------------TTQAMDVGALT 127
LAVE G+E+ L R L + G I H L++ + A
Sbjct: 72 ALLAVENAFGVEVSGATALTRELIMQGGMIQDHALHLYCLLLPDLLGVPGVTGLAQKAPE 131
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
G + + E G +H+ R GG+ Q + + + + +S A D
Sbjct: 132 LLKAGLSIKRVGNMIQETVGGRLIHSVNIRLGGLGQRVGKKELLRLRHELESVLPACRDA 191
Query: 188 SDLL-TGNRIFKQR------NVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
L T + G + G SG + + +
Sbjct: 192 YRLFRTPFPFPELPSPNALAVDPCGAGRSAAIRCRMGGGESFAVSG--YREAIKESVLPH 249
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQC---VNRLLGKNKVGPVSASDPKIV 297
S + +GK + + V++ Q + + + + +
Sbjct: 250 SNAKYSKVMGKEATVGALARLSLG-----VRLRAQAQGVFDEVKHEILGRDIRGNSLAQA 304
Query: 298 PPKRADMKRSMESLIHH-----FKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKP 352
+R++E + G + G AA EAP+G D
Sbjct: 305 IELCDAAERAIELIDRLVEEGQGPPDDVGPVLRAGRGSAACEAPRGLLIHSYGFDSNGIC 364
Query: 353 YRCKIRAPGYAHLQAME----FLCKGH-------QLADVSAILGSLDIVFGEV 394
+ P + AM L +G + ++ D
Sbjct: 365 TEADVVTPTALNQGAMARDLLALARGMEGEETKKMTTALERLIRCYDPCISCA 417
>gi|118122618|emb|CAJ84019.1| putative Ni,Fe-hydrogenase large subunit [Hydrogenophilus
thermoluteolus]
Length = 448
Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats.
Identities = 51/414 (12%), Positives = 102/414 (24%), Gaps = 87/414 (21%)
Query: 45 LHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYS 104
L RG E++++ + L A+ R+ + + Q A A A+ I+ G L+
Sbjct: 21 LFRGFERILQGRAPLDALTIVPRICGICSVAQSMAAAQALADWARIKPVPNGALVAQTVL 80
Query: 105 EIGRILSHLLNVTTQAMDVGALTPPL---------------------WGFEEREKLMVFY 143
+ + HL + M + R +
Sbjct: 81 AVENLADHLTHFFLFFMPDFTHSAYRTMPWFDAAVRRFAPYRGESAARWLAARAQWFHLV 140
Query: 144 ERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND------ISDLLTGNRIF 197
+G H +P G + I ++ L + + +L +
Sbjct: 141 GLLAGRWPHTLAVQPSGTTRTIHAMEQRELLRMVGQMRRYLTESLFGDTLDAVLALDSAD 200
Query: 198 KQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP--------- 248
G + + + G A+D + Y Y +
Sbjct: 201 ALLAWAEGRESDAAFFIQVAHALELFTVGRAYD--RFLSYGAYRAWPAGVWERATAASVP 258
Query: 249 -------------------------------IGKHGDCYDRYLVRMMEMRESVKIIRQCV 277
+ + E+ + R V
Sbjct: 259 LDEAAIVEEVAASWLGGAASHPAEGETVPWLERPDAYSWCKAPRYHGAPAETGALARAVV 318
Query: 278 NRLLGKNKV----GPVSASDPKIVPPKRADMKRSMESLIHHF----KLYTEGYHVPVGEV 329
+ + G S + A + + +E+ + G
Sbjct: 319 AGVPLARDLVQRWGGSLFSRVIARLWECARIVQWVEAWLTEIDVKAPFIEPVVWPNEGRG 378
Query: 330 YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKG 374
VEA +G G +L + R +I AP + +E +G
Sbjct: 379 VGLVEAARGALGHWLEV-ANGRIQRYQIIAPTTWNFSPRDQTGQPGPLEKALEG 431
>gi|152993250|ref|YP_001358971.1| Ni-Fe hydrogenase, large subunit HupV [Sulfurovum sp. NBC37-1]
gi|151425111|dbj|BAF72614.1| Ni-Fe hydrogenase, large subunit HupV [Sulfurovum sp. NBC37-1]
Length = 433
Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats.
Identities = 49/408 (12%), Positives = 105/408 (25%), Gaps = 52/408 (12%)
Query: 35 VERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEK-----LLG 89
+E V + G +RG E+++ K A+ R+ + A A+E
Sbjct: 28 IEDVRINFGF-YRGIEEILVGKDPRDALVITPRVCGICNHAHLIAAVRALENGYASAGWE 86
Query: 90 IEIPIRGQLIRVLYSEIGRILSHLLNVTT-----QAMDVGALTPPLWGFEEREK---LMV 141
+ + + + IR + +H+ + + + + + +
Sbjct: 87 VVLSPKAKAIREFTLSCELLQNHIKWMYMTIFPNLERYLKIESSENYAVKASYFSTTITK 146
Query: 142 FYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI-----SDLLTGNRI 196
+G H++Y PGGV D + + + +
Sbjct: 147 ALAIFAGQWPHSSYAVPGGVTCDPTQLDIIQAQSLLEECVRFFEQMLTGCTLEAYLSIES 206
Query: 197 FKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS--------ELDFDIP 248
+ G S + + P ++D
Sbjct: 207 VSSLHHIEGDFGKLLHLLGSNGMAKKGQSYDRFIVFADSPLSPAGKSIATSVSKVDTKYV 266
Query: 249 IG-KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR-ADMKR 306
+ + + + M E + R V++ + R ++ +
Sbjct: 267 VESEQKGSMAKAVSYKNRMYEVGPLARGMVSKEPIVKNLHKRYKDSMMTRVFARIHEVAQ 326
Query: 307 SMESLIHHFKLY---------TEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKI 357
+E K ++ + E VEA +G + K +I
Sbjct: 327 LLEKNREMLKSIRVDEPSCTLSDTLKLYEFEGTGTVEAARGSLIHR-TTVSNGKIANYEI 385
Query: 358 RAPGYAHLQ--------AMEFLCKGHQL---ADVSAILGSLDIVFGEV 394
P +L G Q AD I + D+
Sbjct: 386 ITPTQWNLSHGDEKEKGIAVKAMVGSQSMEEADF--IFRTFDVCSVCT 431
>gi|294862473|sp|P84625|VHCA_ARCPA RecName: Full=F420-non-reducing hydrogenase iron-sulfur subunit A
Length = 486
Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats.
Identities = 56/467 (11%), Positives = 110/467 (23%), Gaps = 82/467 (17%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFL 59
M K + T G ++ + LD V I + RG E +
Sbjct: 1 MKKIEIEPMT--------RLEGHGKIAIFLDDKGNVADAFYQI-VEFRGYETFLRGLPIE 51
Query: 60 QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+ + V A A + + G+E + IR LY + H +
Sbjct: 52 EVPRTVSTICGVCRAVHHTASTKASDGVYGVEPTETAKKIRELYLNAHYVEDHCAILYAL 111
Query: 120 AMDVGA--------------------LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
+ + ++R + E G +H PG
Sbjct: 112 GLPDFVVGIEADPAERNLVGLIKKVGVDVGKTVLKKRFAAVKVLEMLGGKPIHPVAGLPG 171
Query: 160 GVHQDIPPELVEDIGCWCDSFPS----ALNDISDLLTGNRIFKQR-NVNIGTVKLEDAWG 214
G + I + ++I L D++ N + + V +
Sbjct: 172 GWSKRITEDERKEIEALAKEMVELGELTLQVFEDVILKNEKLLELITADYYRVVVNYLGT 231
Query: 215 WGFSGVMIRGSG----------------------------AAWDLRKSQPYECYSELDFD 246
+G + G W K ++ F
Sbjct: 232 VDDAGKVNYYDGWQVGIDTKGNEVFRFKGKDYLNYIAERVVPWSYVKMPYFKQLGWKGFV 291
Query: 247 IPIGKHGDC---YDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP--KR 301
G R + M ++ + + + L + ++ + V
Sbjct: 292 DGEGTSLYSVGPLARCNIGDMNTPKAKEAQEKMFDVLKERPIHYIMAYHWARAVELLNAA 351
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+ + GE +EAP+G + +D +
Sbjct: 352 ERVLELAQDPEITSPDVRAELGEVTGEGVGIIEAPRGTLIHHYKTDENGIVTDANLIVAT 411
Query: 362 YAHLQAMEFLCK---------GHQLAD-----VSAILGSLDIVFGEV 394
+ + K ++ D V DI
Sbjct: 412 THNHAPINIAIKKAAQHFIQENKEINDKLLNYVEIAYRPYDICQACA 458
>gi|218674603|ref|ZP_03524272.1| NADH-ubiquinone oxidoreductase protein, chain D [Rhizobium etli
GR56]
Length = 136
Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats.
Identities = 67/139 (48%), Positives = 89/139 (64%), Gaps = 5/139 (3%)
Query: 258 RYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK-RADMKRSMESLIHHFK 316
R+ R+ EMRES+ II QC++++ GP P I P + + SME+LI HF
Sbjct: 1 RWRCRVDEMRESIGIIEQCIDQM----PEGPFQIDMPTIAFPLDKDRVHCSMEALIQHFD 56
Query: 317 LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQ 376
L G+ VP GEVY+A+EAPKGE G Y+ISDG KP+R K+RAP + +LQA+ +
Sbjct: 57 LSAYGFKVPKGEVYSAIEAPKGELGFYIISDGSPKPFRMKVRAPSFVNLQALFGVTNARY 116
Query: 377 LADVSAILGSLDIVFGEVD 395
LAD+ A+LGSLD V EVD
Sbjct: 117 LADMIAVLGSLDPVMAEVD 135
>gi|11498968|ref|NP_070201.1| methylviologen-reducing hydrogenase, subunit alpha (vhuA)
[Archaeoglobus fulgidus DSM 4304]
gi|2649200|gb|AAB89872.1| methylviologen-reducing hydrogenase, subunit alpha (vhuA)
[Archaeoglobus fulgidus DSM 4304]
Length = 458
Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats.
Identities = 50/413 (12%), Positives = 113/413 (27%), Gaps = 43/413 (10%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD VE RG EK++ + + +
Sbjct: 11 IEGHAKVTIFLDSSGKVENAFFQA-TEFRGYEKILSGLPMEEVPRVVSTICGICRAIHFT 69
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA------------- 125
A A +++ G+E +++R + I H L++ A+
Sbjct: 70 AALKAADQVFGVEASDAAKIVREMLLCAHFIEDHTLSLLALALPDFLSPEERNIFGVIRN 129
Query: 126 -LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
+R + + G +H PGG + E + I +
Sbjct: 130 LGELGRELLRKRGYAVRILQILGGRNIHPVTALPGGWAKAPTDEELGLIERYSRELLDLG 189
Query: 185 NDISDLLTGNRIFKQ-----------RNVNIGTVKLEDAWGWGFSG-VMIRGSGAAWDLR 232
+ ++L + + + G ++R SG +
Sbjct: 190 YRMVEVLEAALDMGDGLELRAATLGTEKKGLVNLYDGEQVVKDEEGKEVLRFSGKEYADI 249
Query: 233 KSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSAS 292
++ +S Y + ++ E + V N + +
Sbjct: 250 ITEKSLSWSYSKLTEIKPLGEKLYVVGPLARLKTAELTPKASEIVKTYGVSNNLLYNHFA 309
Query: 293 DPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKP 352
+ + + ++ E V GE VEAP+G + +D
Sbjct: 310 RAVEIIYAAERLLE-LSQSYRGGRIQNEPQKV-AGEGVGIVEAPRGTLIHHYWTDEKGIV 367
Query: 353 YRCKIRAPGYAHLQAMEFLCKGHQLAD-----------VSAILGSLDIVFGEV 394
+ +++A+ + ++A+ V + + D
Sbjct: 368 RGSNLIVATTHNVRAINHVV--GKVAERASDTRNLAEKVEVAIRAFDPCMACA 418
>gi|167742574|ref|ZP_02415348.1| putative hydrogenase subunit [Burkholderia pseudomallei 14]
Length = 405
Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats.
Identities = 54/221 (24%), Positives = 84/221 (38%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I GP H + GE V R++ +G HRG E+L E L R+
Sbjct: 185 EIAVGPIHAGVIEPGHFRFSVVGEKVLRLEERLGYAHRGVERLFERADALAGSRLAARIA 244
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + AY +A+E+ L I +P R +R L E R+ +HL ++ D G
Sbjct: 245 GDSTVAFAWAYCMALEQALRIRVPDRALRLRALLLERERVANHLGDLGALGNDAGFAVGL 304
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
+E + +R G R PGGV +DI + I CD + +
Sbjct: 305 AHFSRLKEDWLRMQDRIFGHRYLMDAIVPGGVARDIAADDAAAIVAQCDRIEREVRAMQT 364
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWD 230
+ + R G + + +G G+ R SG D
Sbjct: 365 IYDDQSGLQDRFAGTGRLDAQAVAHFGVCGLAARASGQPRD 405
>gi|18977704|ref|NP_579061.1| H-II alpha (hydrogenase subunit alpha) [Pyrococcus furiosus DSM
3638]
gi|7406957|gb|AAF61854.1|AF176650_4 sulfhydrogenase II subunit a [Pyrococcus furiosus DSM 3638]
gi|18893438|gb|AAL81456.1| H-II alpha (hydrogenase subunit alpha) [Pyrococcus furiosus DSM
3638]
Length = 412
Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats.
Identities = 62/401 (15%), Positives = 118/401 (29%), Gaps = 33/401 (8%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G + + ++ V+ I R E L + + R+ + + A
Sbjct: 11 VEGNGKAEIVIENGEVKDARVKIVEGPRFFEILTLGRDYWDVPDLEARICAICYIAHSVA 70
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTT------------QAMDVGALT 127
A+EK LGI++P + +R L I SH L++ +M
Sbjct: 71 SVRAIEKALGIDVPESVEKLRELALWGEIIESHALHLYLLALPDVFGYPDAISMIPRHGE 130
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
G + E G +H +PGG + E +E I S I
Sbjct: 131 LVKEGLTIKAFGNAIRELIGGREIHGINIKPGGFGRYPSEEELEKIAEHSKSLIKFARRI 190
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQP--YECYSELDF 245
+ ++ +G V + + ++I G + P Y +
Sbjct: 191 VGIFAS----QEAGGAVGEVLMATSDYLWGDELIINGERVQYYEVDEVPVGYSFAKHSYY 246
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
G L E+ +++ + ++L K + A + +
Sbjct: 247 KGNPVFVGALPRLLLKGESIEGEAARMLEEYRDKLESKYVIYNNLAQ-AIELLYALERVP 305
Query: 306 RSMESLIHHFKLYTEGYHVPV-GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
+ +E ++ G GE VEAP+G + K P +
Sbjct: 306 QLVEEILSEGIERGNGEISQESGEGVGYVEAPRGVLVHHYRI-ENGKVVWSNTITPTAFN 364
Query: 365 -----LQAMEFL--CKGHQLAD-----VSAILGSLDIVFGE 393
L +E G + + + I+ + D
Sbjct: 365 QRLMELSLLEEAKRLYGSESEENMKKRLEVIVRAFDPCISC 405
>gi|147919455|ref|YP_686805.1| coenzyme F420-reducing hydrogenase, alpha subunit [uncultured
methanogenic archaeon RC-I]
gi|110622201|emb|CAJ37479.1| coenzyme F420-reducing hydrogenase, alpha subunit [uncultured
methanogenic archaeon RC-I]
Length = 417
Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats.
Identities = 58/387 (14%), Positives = 111/387 (28%), Gaps = 16/387 (4%)
Query: 21 HGVLRLILELDGEIVERVDPHIGLLH-RGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +L+LE+D + ++ RG EK I K A R + P+ A
Sbjct: 14 EGHAKLVLEVDDNGIVTQGNYLSTTPVRGFEKFITGKPMEFAPVASSRFCGICPITHASA 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNV------TTQAMDVGALTPPLWGF 133
A+++ LGI P G +++ L + ++ SH L+ +A GAL +
Sbjct: 74 STDAIDRALGITPPKDGVVLKHLCNMGNKLHSHPLHNLLLLPDFFKADPNGALAATVRIQ 133
Query: 134 EEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTG 193
+ R+ + G +HA R GG+ +I I + + + ++ +
Sbjct: 134 KLRKIGQAIVDITGGEAIHAPNIRVGGMQHNISEAAKRKILEMLKEYEPIMKEQNEAMLN 193
Query: 194 NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLR--KSQPYECYSELDFDIPIGK 251
+G E G + R + P Y + +
Sbjct: 194 AFKNSDVPKTLGVHDNELMATDLHYGNADLFE-QEYFYRFTEVTPRSWYPKAEVGEEACG 252
Query: 252 HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESL 311
V + G + G ++ + + + K +
Sbjct: 253 TAPLIGGKAVEGGPKARMTRFAGFGAKDCFGFDPKGAMAINIARQMEIPLTLAKARELAT 312
Query: 312 IHHFKLYTEGYHVPVG-----EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
T G EAP+G K ++
Sbjct: 313 QLDTTKPTMNKPPESGGDGQRLGVGPQEAPRGVNVHTAKVK-DGKITYYNCLVATTWNIL 371
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGE 393
+ C+G ++ + D
Sbjct: 372 TVGKACEGQHYKWAEYVVRAYDPCVSC 398
>gi|289549176|ref|YP_003474164.1| cytochrome-c3 hydrogenase [Thermocrinis albus DSM 14484]
gi|289182793|gb|ADC90037.1| Cytochrome-c3 hydrogenase [Thermocrinis albus DSM 14484]
Length = 544
Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats.
Identities = 59/517 (11%), Positives = 132/517 (25%), Gaps = 142/517 (27%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + ++ V V ++ RG E ++ K L + R+ + + +
Sbjct: 15 LEGDVRADVFVEDGHVVDVQVEA-VMFRGFEIILRGKDPLAGLIVTPRVCGICGGSHLYK 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV---------------- 123
A++ ++P IR + + S
Sbjct: 74 ACQALDTAWHTQVPPNAWWIRNIAQVCETLQSVPRWYYAIFAIDFVNKNYAKSKLYDEVV 133
Query: 124 -----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
T G E + Y G H+++ PGGV + + +
Sbjct: 134 KRWAPFVGTSYKIGLEISALPVKIYAMFGGQWPHSSFMVPGGVMCAPQLDHITRAHALLE 193
Query: 179 SFP-------------------SALNDISDLLTGNRIFKQRNVNIGT-VKLEDAWGWGFS 218
+ +DI + L + + + + LE+ +
Sbjct: 194 RYRTEWLEKVWLGCSVDRWLENKTWDDILNWLEESESHRNSDCGLFIRFCLENGLDKYGA 253
Query: 219 GVMIRGSGAAWDLRKSQP----------------------YECYSE-------------- 242
GV + ++ + P Y +
Sbjct: 254 GVGNFIACGSYVDPQFYPVSTIEDRNKALLAPSGVVYNGKYYPFDHLNVREDVTHSYFEG 313
Query: 243 -------------LDFDIPIGKHGDCYDRYLVRM----MEMRESVKIIRQ---------- 275
+D ++ + + + + E+ + RQ
Sbjct: 314 SWMLHPWDEETIPVDPEVAKKQGKYSWAKSPRYLINGQPVPCEAGPLARQVVAGYEEAKH 373
Query: 276 ------CVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLI-----------HHFKLY 318
CV + V+ P ++ A M +++ + Y
Sbjct: 374 TCTAAGCVEHAIDPLFRNIVNKIGPSVMVRVLARMHEAVKYYKWAKQWLGKVDFKDDRFY 433
Query: 319 TEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAME 369
+ +P + + EA +G +++ K +I P ++ +E
Sbjct: 434 NKPKELPDAKGFGGTEAARGALMDWIVL-ENGKIKNYQIVTPTAWNIGPRDSKGQMGPIE 492
Query: 370 FLCKGHQLAD------VSAILGSLDIVFGEV----DR 396
G + + V+ + S D DR
Sbjct: 493 KAIVGSPVKNPEDPIEVAHVARSFDSCLVCTVHVYDR 529
>gi|309792318|ref|ZP_07686788.1| NADH-ubiquinone oxidoreductase chain 49kDa [Oscillochloris
trichoides DG6]
gi|308225633|gb|EFO79391.1| NADH-ubiquinone oxidoreductase chain 49kDa [Oscillochloris
trichoides DG6]
Length = 360
Score = 147 bits (372), Expect = 3e-33, Method: Composition-based stats.
Identities = 84/393 (21%), Positives = 146/393 (37%), Gaps = 51/393 (12%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY--F 65
++ ++ P A G RLIL++ E + V+ + + +++ + P
Sbjct: 6 TYILSLEPAAAAWRGPQRLILKVAAEQITDVEYR-------FDLPLRSRSASKLSPIQEV 58
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
+ + A+ALAVE LLG+ P+R IR++ +E R +SHL + +G
Sbjct: 59 AQSCPTCSQSHSLAFALAVEALLGVSAPLRASRIRLVAAECERAISHLTTLEAIFTLMGV 118
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
T E R +L + GS PGG+ +D D+ + +
Sbjct: 119 ATTAATLAEMRTRLSQGLTQLVGSSAEGVLVVPGGIRRDPSAADGADLRSLLTTLSEQVY 178
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
++D + R+ R V +G++ A + G + R SG D+R PY Y+ L
Sbjct: 179 RLADRVIDQRLILARTVAVGSLSETAAAQFRLCGPLARASGLQTDVRVDAPYGAYAALAP 238
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ + + GD Y R ++ +E ES+K+ + ++ L G V P+ +P +A+
Sbjct: 239 QMIVQRSGDVYARVVLLFLEALESLKLSDRALDNLPD----GAVMVELPQSLPVAQAE-- 292
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
A VEAP+G + D + P
Sbjct: 293 -------------------------ATVEAPRGALRYRVEGDTKGELNFW--VEP----A 321
Query: 366 QAMEFLCKGHQL-----ADVSAILGSLDIVFGE 393
+ L L D I S D
Sbjct: 322 PQFDRLLARTLLLQAAPDDALLIALSTDPCSAC 354
>gi|13021924|gb|AAK11583.1|AF323616_2 HupL [Clostridium acetobutylicum ATCC 824]
Length = 428
Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats.
Identities = 47/412 (11%), Positives = 93/412 (22%), Gaps = 70/412 (16%)
Query: 52 LIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILS 111
+++T+ L A+ + +R+ + A LA+E L + + I +R L + +
Sbjct: 1 MLKTRQPLDAIYFTERICGICSTAHAMASTLALEDALKVSVSINDLYVRDLIHSFEFMQN 60
Query: 112 HLLNVTTQAMDVGALT--------------------------PPLWGFEEREKLMVFYER 145
H+ + L
Sbjct: 61 HIRQFYNLTVPSYVRMSKLDPLYSNQYSDYRLPNYENEIISKHSLESINYSRLAHEGLAL 120
Query: 146 ASGSRMHAAYFRPGGVHQDIPPELVED-----------IGCWCDSFPSALNDISDLLTGN 194
G H+ GGV I + I + +
Sbjct: 121 FGGKAPHSHGIFVGGVTTSIDSYKLVKAKSIISSLKVFINNIMLEDMNTIAKYYSDYFNM 180
Query: 195 RIFKQRNVNIGTVKLEDAWGWGFSGV--MIRGSGAAWDLRKSQP---YECY--------- 240
++ G + MI ++D K + Y
Sbjct: 181 GETYNNFMSYGLFDHYKDPEISYVSPSVMINYKKQSFDKNKITENILHSWYVSDTENEKP 240
Query: 241 --SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
D K G + + E + R ++ +
Sbjct: 241 SNESADNIDLNKKQGYSFIKSPNYDGYPMEVGPLARMILSGDYKGKSSCMDRNVARVLEA 300
Query: 299 PKRADMKRSMESLIHHFKLYTEGYHVP-VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKI 357
K + + I + Y +P + +G G ++ I
Sbjct: 301 KKIISIMEKLADKIELLPNSQKTYDIPINAFGAGLTDTTRGALGHWIKI-ENKLIKYYNI 359
Query: 358 RAPGYAHLQA---------MEFLCKGHQLADVS------AILGSLDIVFGEV 394
P ++ E G +L +V I+ S D
Sbjct: 360 ITPTVWNMSPKNEKGAFGVGEKSLVGTKLKNVQEPVEVGRIMRSFDPCVSCA 411
>gi|224372617|ref|YP_002606989.1| nickel-dependent hydrogenase, large subunit [Nautilia profundicola
AmH]
gi|223588329|gb|ACM92065.1| nickel-dependent hydrogenase, large subunit [Nautilia profundicola
AmH]
Length = 387
Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats.
Identities = 55/384 (14%), Positives = 118/384 (30%), Gaps = 32/384 (8%)
Query: 28 LELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKL 87
L+++G+ + G E+ ++ K ++ A+ R+ + + HA +EK+
Sbjct: 17 LKIEGDKKIDFVQIEFWQYHGIEEYLKNKNYMDALVINPRVCGICGHSHLHATVKVIEKV 76
Query: 88 LGIEIPIRGQLIRVLYSEIGRILSHL--LNVTTQAMDVGALTPPLWGFEEREKLMVFYER 145
+I + Q+ R + S + + +H+ +T + + K+
Sbjct: 77 FKAKISKKAQIFREVTSLLEIVENHIKWFYITIYPTQIKDKEYLFKAVKFSSKISKAIAI 136
Query: 146 ASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIG 205
+G H +Y PGGV D + + I +++ N
Sbjct: 137 LAGQFPHNSYMVPGGVTCDPTYMEIMRLKDLIKEIKE--EYIKEIMDENLTSHDLERFFE 194
Query: 206 TVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMME 265
+ + V+ + S D+ + + + E
Sbjct: 195 NLPKDIGKSLNKFLVLGESNIFK------------SNGDYKNVKEERNKSLSKNALYNNE 242
Query: 266 MRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD----MKRSMESLIHHFKLYTEG 321
E + R +N+ K+ + + R + +E + L
Sbjct: 243 YYEVGPLARMIINKNKNIKKIYDIYSDSIYTRMCARIYEPLLLLDYIEQKLSEVDLCEPS 302
Query: 322 Y---HVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL--------QAMEF 370
+ +V G+ AVEAP+G + K I P +L +
Sbjct: 303 FLKPNVRNGKAIVAVEAPRGSLIHEISIK-NEKIDYYNIVVPTQFNLASSTKENPSPAQA 361
Query: 371 LCKGHQLADVSAILGSLDIVFGEV 394
+A V ++ DI +
Sbjct: 362 ALMNEDIAYVDSVFRCFDICAVCM 385
>gi|294676318|ref|YP_003576933.1| NAD-reducing hydrogenase HoxS subunit beta [Rhodobacter capsulatus
SB 1003]
gi|294475138|gb|ADE84526.1| NAD-reducing hydrogenase HoxS, beta subunit [Rhodobacter capsulatus
SB 1003]
Length = 503
Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats.
Identities = 73/443 (16%), Positives = 124/443 (27%), Gaps = 66/443 (14%)
Query: 14 GPQHPAAHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
GP G R+ + LD V +V H+ L G E L+E + + RL +
Sbjct: 27 GPARGETAGQGRVTICLDARGQVRQVQLHLLDL-CGVETLLEGRAIAEIPEAVQRLCGLC 85
Query: 73 PMNQEHAYALAVEKLLGIE-IPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV-------- 123
P++ A A++++ G + + + +R L + SH + + A
Sbjct: 86 PVSHHLAAVKAMDRIAGYDRLTPTAEKLRRLMQYGQIVQSHAVQLYHLAEPDLLLGFDSE 145
Query: 124 -----------GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVED 172
G R +G R+ A PGG+ + +P +
Sbjct: 146 PARRGLVDVARAFPQLATEGVLMRRFGQEVVRAITGGRLPGAGAVPGGMRRPLPRAARDQ 205
Query: 173 IGCWCDSFPSALNDISDLLTG----NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA- 227
+ D +L N F G G SG + G
Sbjct: 206 LRADVDQVIDWAAGALRVLERLHGTNPAFYDHPAETG---GNLLALVGASGAVDFYDGRL 262
Query: 228 -AWDLR-------------------KSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMR 267
A D R S P + R V +
Sbjct: 263 RARDARGATLFDAVPAAAYRGVLAEPSGPGGPHLRALGPETGWYRVGPLARLQVCDLLTS 322
Query: 268 ESVKIIRQ-CVNRLLGKNKVGPVSASDPKIVP--PKRADMKRSMESLIHHFKLYTEGYHV 324
E + RQ + GK G V ++V ++ ++
Sbjct: 323 EKAETERQRLLAPGDGKPLQGSVFHHGARLVELLHAAELIRDLLDDPELLGTDLMADRGA 382
Query: 325 PVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGH--------- 375
P E +EAP+G D + RC + + +AM+ +G
Sbjct: 383 PQREAVGVIEAPRGTLLQRYEVDEAGRIRRCTLLLSTRNNSRAMDAALQGVAAQYCDGRR 442
Query: 376 ----QLADVSAILGSLDIVFGEV 394
LA + + + D
Sbjct: 443 VTEDLLAHIEVAIRAFDPCLSCA 465
>gi|213580935|ref|ZP_03362761.1| hypothetical protein SentesTyph_06919 [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
Length = 215
Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats.
Identities = 53/210 (25%), Positives = 88/210 (41%), Gaps = 31/210 (14%)
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ D+L +QR V IG + E A + G M+R SG A D R P+ Y L +
Sbjct: 1 MVDMLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPME 60
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ + D R VR+ E+ S+ +I ++ L G GP+ +P + A
Sbjct: 61 VHSEQGCDVISRLKVRINEVYTSLNMIDFGLDNLPG----GPLMVEGFTYIPHRFAL--- 113
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
EAP+G+ + ++ K YR + RA YA+
Sbjct: 114 ------------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWP 149
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ ++ +G+ ++D I+GSLD + DR
Sbjct: 150 TLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 179
>gi|229026732|ref|ZP_04183069.1| NADH dehydrogenase I, D subunit [Bacillus cereus AH1272]
gi|228734580|gb|EEL85237.1| NADH dehydrogenase I, D subunit [Bacillus cereus AH1272]
Length = 147
Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats.
Identities = 71/173 (41%), Positives = 94/173 (54%), Gaps = 28/173 (16%)
Query: 223 RGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLG 282
R +G WDLRK +PY Y DFDIP+G GD +DRY+ RM E+ ES+KI+ Q V +
Sbjct: 2 RCTGVNWDLRKDEPYSIYDRFDFDIPVGSVGDAWDRYVCRMQEIEESLKIVEQAVQQFP- 60
Query: 283 KNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGV 342
K G V A PKI+ P GE + +E+P+GE G
Sbjct: 61 --KDGAVLAKVPKII-------------------------KAPKGEAFVRIESPRGEIGC 93
Query: 343 YLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
Y+ SDG +PYR K R P + +LQ + L KG +A++ ILG +DIV GEVD
Sbjct: 94 YIASDGKKEPYRLKFRRPSFYNLQILPKLLKGENIANLITILGGVDIVLGEVD 146
>gi|320355405|ref|YP_004196744.1| nickel-dependent hydrogenase large subunit [Desulfobulbus
propionicus DSM 2032]
gi|320123907|gb|ADW19453.1| nickel-dependent hydrogenase large subunit [Desulfobulbus
propionicus DSM 2032]
Length = 566
Score = 146 bits (369), Expect = 6e-33, Method: Composition-based stats.
Identities = 60/539 (11%), Positives = 111/539 (20%), Gaps = 166/539 (30%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAP------ 73
G LR+ E+D + G + RG E +++ + A Y R+ V
Sbjct: 13 IEGHLRIDCEVDNGKITNA-WSSGQMWRGIEIILKGRDPRDAWAYTQRICGVCTTVHAMA 71
Query: 74 -----------------------------------MNQEHAYALAVEKLLGIEIPIRGQ- 97
+ V+ + +
Sbjct: 72 SVRAVEDALKLEIPLNAQYIRNMIVGAHGIHDHMVHFYQLCALDWVDIVSATTADPQATA 131
Query: 98 --------LIRVLYSEIGRILS--------------------HLLNVTTQAMDVGALTPP 129
EI + H T +++ A T
Sbjct: 132 ALGQKLSGWKGNSVQEIKAVQDRLKKFIASGQLGIFASGYWGHPAMKLTPEVNLLAATHY 191
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQ----DIPPELVEDIGCWCDSFPSALN 185
L E + K+ H GGV D P L + + +
Sbjct: 192 LQALEYQRKINQVVAILGSKTPHIQNLAVGGVTNPINPDSPANLTIEKLFHIKTLIDEVG 251
Query: 186 DISD--LLTG-------NRIFKQRNVNIGTVKLEDAWGWGFSG-----VMIRGSG----- 226
D +LT + Q + G G
Sbjct: 252 DFIKQAMLTDVAAIGAYYADWTQYGAGVLNYLSVPDMPMDSKGTTFALPGGYIPGGDLAK 311
Query: 227 ---------------------AAWDLRKSQ--PYECYSELDFDIPIGKHGDCYDRYLVRM 263
AW PYE + ++ + + M
Sbjct: 312 FRPIASQKETVLYDSIKESIKHAWYNGNWDRSPYEGETVPNYTGFEYDKKYSWVKAPTFM 371
Query: 264 MEMRESVKIIRQCVNRLLGK-------------------------NKVGPVSASDPKIVP 298
+ + + L G + ++V
Sbjct: 372 GQPAQVGPLPHVVAMYLAGHQATKQYVDATLQTVSALAGATVGIDALHSTIGRIAARVVR 431
Query: 299 PKR------ADMKRSMESLIHHFKLYTEGYHVPVGE--VYAAVEAPKGEFGVYLISDGGN 350
+ ++++ P GE EAP+G +++
Sbjct: 432 CAVLHDTLSVQWQALIDNIGKGDLDTFNAPVFPRGEQRGVGFHEAPRGTLSHWIVI-ENG 490
Query: 351 KPYRCKIRAPGYAH---------LQAMEFLCKGHQLADVS------AILGSLDIVFGEV 394
K + P + L E G+ +A+ + S D
Sbjct: 491 KIKNYQAVVPSTWNAGPRNDQGALGPYEASLVGNPVANAELPLEVLRTVHSFDPCLACA 549
>gi|296446378|ref|ZP_06888323.1| nickel-dependent hydrogenase large subunit [Methylosinus
trichosporium OB3b]
gi|296256151|gb|EFH03233.1| nickel-dependent hydrogenase large subunit [Methylosinus
trichosporium OB3b]
Length = 430
Score = 145 bits (367), Expect = 9e-33, Method: Composition-based stats.
Identities = 54/422 (12%), Positives = 112/422 (26%), Gaps = 51/422 (12%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + + V+ +I R E L+ + F +A R+ + P+ + +
Sbjct: 14 VEGEGGLEIVIRDGEVKSAALNIFEPPRFFEALLRGRGFAEAPDITARICGICPVAYQMS 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG------------ALT 127
A+E LG+E+ +R L I SH+L+V
Sbjct: 74 AVHAIETALGVEVSGPLADLRRLLYCGEWIESHMLHVHMLHAPDFLGYAGGVEMARDHGD 133
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
G ++ G +H R GG ++ + + + A ++
Sbjct: 134 VVRRGLAIKKVGNEIMTLVGGREIHPINVRVGGFYRAPRKRELATLVEKLERARDAAREV 193
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ G + G ++ G D + + +
Sbjct: 194 VRFVAGLDFPECERDYTFVSLRHPGEYPFTRGRIVSSRGLDIDASQFDAHFEEFHVQRST 253
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIR--QCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ + R ++ + +GPV A+ K + + +
Sbjct: 254 ALHARMRHDGAPYLVGPLARYALNFDALSPLAQEAAREAGLGPVCANPYKSIIVRSVETL 313
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVE-----------APKGEFGVYLISDGGNKPYR 354
+++ + Y E + +E AP+G
Sbjct: 314 YALDEALRIIARYEEPDRP-----FIVIEPRAGEGAAATEAPRGMLHHRYRLAADGVIAD 368
Query: 355 CKIRAPGYAHLQAMEFLCKGHQLADVSA------------ILGSLDIVFGE--------V 394
I P + +E + +A + + D V
Sbjct: 369 AVITPPTSQNQSMIEKDLQ-SLVAGFLHLPEEELRHRCEQTVRNFDPCISCSTHFLRLDV 427
Query: 395 DR 396
DR
Sbjct: 428 DR 429
>gi|284162116|ref|YP_003400739.1| nickel-dependent hydrogenase large subunit [Archaeoglobus profundus
DSM 5631]
gi|284012113|gb|ADB58066.1| nickel-dependent hydrogenase large subunit [Archaeoglobus profundus
DSM 5631]
Length = 574
Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats.
Identities = 64/532 (12%), Positives = 107/532 (20%), Gaps = 174/532 (32%)
Query: 35 VERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPI 94
V L RG E ++ + A R+ V P A A++ +
Sbjct: 34 VVDKAYSHTNLFRGFEIILRGRDPRDAFYITQRICGVCPAPHGEAAIQALDHAYDVTPTP 93
Query: 95 RGQLIRVLYSEIGRILSHLLNVTTQAMD-----------------------VGALTPPLW 131
LIR + + HL++ +G + +
Sbjct: 94 TAVLIRNILQAAYYVYDHLIHTYLLVGPEIGVVCKYPPMVPPALGKEGIRKLGLGSSYVQ 153
Query: 132 GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL-----ND 186
+ + K G H PGGV + + D
Sbjct: 154 CVDIQRKANEIVALWGGKFPHHMCEYPGGVTVKPTGDRIAQTLAKATELWEWCAHVALKD 213
Query: 187 ISDLLTGNRIFKQR-----------NVNIGTVKLED------------------------ 211
+ + N I +R +IG
Sbjct: 214 LIAIKERNEIVSERLSELLGIEHRAFADIGASWGNYLSYGIFPDPENYDDWVKAQDGQPS 273
Query: 212 ----------AWGWGFSGVMIRGSGAAWDLRK--------SQPYECYSELDFDIPIGKHG 253
+W G R + +P++ D +
Sbjct: 274 FRKSAVIYAGSWQNGELKPFERDKIVEYVKYSRYKDEISGMKPWDVEMTNDIVWKDKPNA 333
Query: 254 DCYDRYLVRMMEMRESVKIIRQCVNRLLGK--------------------NKVGPVSASD 293
+ + ++ E + R V L N G V
Sbjct: 334 YAWMKAPRYDGKVHEVGPLARMIVTYGLRWKFDVTNPITGETVSVDWEVMNPKGSVIDRV 393
Query: 294 PKIVPPKRADMKRSMESLIHHFKLYTEG-----------YHVPVGEVYAAVEAPKGEFGV 342
V + ME + +E Y GE + EAP+G
Sbjct: 394 ASRVVQALLFATKIMEWAVQLKDYASEYPIVSKDIPDYKYVPNEGEGWGLWEAPRGALLH 453
Query: 343 YLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGH------QLADV------- 380
Y P +L +E +G + DV
Sbjct: 454 YTKIK-NKVIANYACVVPSTWNLGPRDDFGNPGPVEKALEGCWLPKNLSVPDVCNALWPE 512
Query: 381 ---------------------------------------SAILGSLDIVFGE 393
AI+ S D
Sbjct: 513 EDVLGMKWGDALAKAIAPLGLAELNLEPSNGAKYNTSLALAIVRSFDPCIAC 564
>gi|323474537|gb|ADX85143.1| formate hydrogenlyase subunit 5 (HycE) [Sulfolobus islandicus
REY15A]
Length = 391
Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats.
Identities = 83/384 (21%), Positives = 131/384 (34%), Gaps = 50/384 (13%)
Query: 13 FGPQHPAAHGVLRLILELDGEIV--ERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
+GP ++ I+ +GE + + +R E +I T A+ +R++
Sbjct: 51 YGPSAGGLLETIKFIITTNGEKILGIDAEV---YKNR--EIVISGLTVDDALLIVERINA 105
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ ++ LAVE L +E QL R+ E+ RI +HL ++ P
Sbjct: 106 PFSASHTISFLLAVEDSLELEQDYPTQLKRIAEIELERIRNHLFVISRLTETASLNVPTY 165
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
EK+ + G R GV+ D + I F I D
Sbjct: 166 HLLHLVEKVNRLIGKMCGHRYFFGVNAINGVNCDF--GNLLRIIDITKEFKQ----IFDG 219
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
L +RIF R G + E++ G R +G A+D RK Y +L F I
Sbjct: 220 LLESRIFIDRLQENGKIIDENSI-----GPAARAAGLAYDARKDFKALPYEDLGFRTVIT 274
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
+ D + R+LVR ME+ ES KI+ ++K S
Sbjct: 275 QEADSFGRFLVRGMEIIES------------------------AKILVELHDEIKNSNNE 310
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
+ K GE A VE+P G+ Y+ + + P +L
Sbjct: 311 RGKNHKQGG-------GEGLARVESPSGDLAYYVKLN-NGIIDSVLLLTPSQVNLNLFLK 362
Query: 371 LCKGHQLADVSAILGSLDIVFGEV 394
D S I E+
Sbjct: 363 SVINTIFTDFQFNWESFGIWVSEI 386
>gi|14521157|ref|NP_126632.1| cytochrome-c3 hydrogenase alpha chain [Pyrococcus abyssi GE5]
gi|5458375|emb|CAB49863.1| Sulfhydrogenase II,alpha chain [Pyrococcus abyssi GE5]
Length = 415
Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats.
Identities = 54/402 (13%), Positives = 104/402 (25%), Gaps = 35/402 (8%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G+ + + ++ V+ I R E L + ++ R+ + + A
Sbjct: 14 VEGIGKAEIVIENGTVKDARVKILEGPRFFEVLTLGRHYMDVPDLEARICAICYASHSIA 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILS--HLLNVTTQAMDVGALTPPLWGFEERE 137
A+E LGIE+ + +R L I S L + G + E
Sbjct: 74 SVRAIENALGIEVSESVEKLRELALWGEIIESHALHLYLLALPDVYGYPDAISMVSKYGE 133
Query: 138 KLMVFY----------ERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
+ E +G +H +PGG + +E I + I
Sbjct: 134 LIKEGLTIKALGNMIRETIAGREIHGINVKPGGFGRYPSERELEKIAKHARALVRFARRI 193
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
++ + +G PY +
Sbjct: 194 VNIFATQEPRGAKIEVPMVTSEYLWGDELIAGNDRIQ--YEDIEEVPVPYSFAKHSYYKG 251
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
G L E+ +++ ++ + + A ++V K +
Sbjct: 252 KPIFVGALARLLLKGSKLEGEAKRLLDSYKEKIKSGHVIYNNLAQAIELVYALEVASKIA 311
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
E + + T GE VEAP+G + + P +
Sbjct: 312 EELISEGIEKSTCEPSEKSGEGIGYVEAPRGVLVHHYRI-ENERIVWSNTITPTAFNQGM 370
Query: 368 MEFLCKGHQLADV----------------SAILGSLDIVFGE 393
ME L D ++ + D
Sbjct: 371 MEKSL----LEDARNMFGKESETTLKSKLEEVVRAFDPCISC 408
>gi|254680081|gb|ACT78687.1| NADH-ubiquinone oxidoreductase [Caenorhabditis brenneri]
Length = 114
Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats.
Identities = 69/114 (60%), Positives = 87/114 (76%)
Query: 283 KNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGV 342
K G + D K+VPPKRA+MK +MESLIHHFK +TEG+ VP G Y +EAPKGEFGV
Sbjct: 1 KMPAGEIKVDDHKVVPPKRAEMKENMESLIHHFKFFTEGFQVPPGASYVPIEAPKGEFGV 60
Query: 343 YLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YL++DG KPYRC IRAPG+AHL A+ +C +AD+ A++G++DIVFGEVDR
Sbjct: 61 YLVADGTGKPYRCYIRAPGFAHLAAIHDVCYMSLIADIVAVIGTMDIVFGEVDR 114
>gi|302391445|ref|YP_003827265.1| nickel-dependent hydrogenase large subunit [Acetohalobium
arabaticum DSM 5501]
gi|302203522|gb|ADL12200.1| nickel-dependent hydrogenase large subunit [Acetohalobium
arabaticum DSM 5501]
Length = 473
Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats.
Identities = 62/449 (13%), Positives = 119/449 (26%), Gaps = 68/449 (15%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
INF P G+L + + +D V D G + RG E+++ + AV R+
Sbjct: 5 EINFSPVT-RLSGLLSVDVIMDNLQVVEADVK-GNMFRGYEEIMGGRQVRDAVYMTQRVC 62
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL--- 126
+ + A + +++L G EI Q +R + + +H+ + ++
Sbjct: 63 GICSLAHGAAGSYLLDELYGNEISETAQYLRNIMYGADFLQNHIRHFYLFSLPDFVDLPN 122
Query: 127 -----------------------TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQ 163
E ++ G F GGV
Sbjct: 123 EPPFQDQNLTDARLNPEENQRLIEHYYDAIEASQESHQILALFGGKAPEQHSFLDGGVAV 182
Query: 164 DIPPELVEDIGCWCDSFPSALNDIS--DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGV- 220
+ + D + D ++ T K ++G G
Sbjct: 183 APTVDKINQARALVDDIYEFVTGAMLPDTQLIADVYNDYFDIGVTPKRLLSFGLFRFGPR 242
Query: 221 ---MIRGSGAAWDLRKSQPY----------ECYSELDFDIPIG-----KHGDCYDRYLVR 262
++ G D + P + + D D + + + + +
Sbjct: 243 NEELLWKGGILEDNSLTPPELDLIEETVINSWFEDEDGDGEVEPNPYKPYAYSWIKTVQY 302
Query: 263 MMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD-MKRSMESL-IHHFKLYTE 320
E E+ + R +N I K MK+ +E L + +
Sbjct: 303 GGEFFETGPLARMLINGFYEGGTSTMDRILARTIETVKIVALMKKWLERLNLQSEAPINQ 362
Query: 321 GYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFL 371
E A +G I P + +E
Sbjct: 363 NQTPVKSEADGITGAMRGGLLHSASIQDEEVVE-YDIITPTVWNFAPKDRFGSRGPVENA 421
Query: 372 CKGHQLA--D-----VSAILGSLDIVFGE 393
G ++ D + I+ S D
Sbjct: 422 IVGTEIPREDEIYTVLGRIIRSFDPCISC 450
>gi|5020380|gb|AAD38065.1|AF153438_1 HoxH [Rhodobacter capsulatus]
Length = 503
Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats.
Identities = 69/440 (15%), Positives = 122/440 (27%), Gaps = 60/440 (13%)
Query: 14 GPQHPAAHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
GP G R+ + LD V +V H+ L G E L+E + + RL +
Sbjct: 27 GPARGETAGQGRVTICLDARGQVRQVQLHLLDL-CGVETLLEGRAIAEIPEAVQRLCGLC 85
Query: 73 PMNQEHAYALAVEKLLGIE-IPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV-------- 123
P++ A A++++ G + + + +R L + SH + + A
Sbjct: 86 PVSHHLAAVKAMDRIAGYDRLTPTAEKLRRLMQYGQIVQSHAVQLYHLAEPDLLLGFDSE 145
Query: 124 -----------GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVED 172
G R +G R+ A PGG+ + +P +
Sbjct: 146 PARRGLVDVARAFPQLATEGVLMRRFGQEVVRAITGGRLRGAGAVPGGMRRPLPRAARDQ 205
Query: 173 IGCWCDSFPSALNDISDLLTG-NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA--AW 229
+ D +L + + SG + G A
Sbjct: 206 LRADVDQVIDWAAGALRVLERLHGTNPAFYDHPPRPAATSWRWSAPSGAVDFYDGRLRAR 265
Query: 230 DLR-------------------KSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESV 270
D R S P + R V + E
Sbjct: 266 DARGATLFDAVPAAAYRGVLAEPSGPGGPHLRALGPETGWYRVGPLARLQVCDLLTSEKA 325
Query: 271 KIIRQ-CVNRLLGKNKVGPVSASDPKIVP--PKRADMKRSMESLIHHFKLYTEGYHVPVG 327
+ RQ + GK G V ++V ++ ++ P
Sbjct: 326 ETERQRLLAPGDGKPLQGSVFHHGARLVELLHAAELIRDLLDDPELLGTDLMADRGAPQR 385
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGH------------ 375
E +EAP+G D + RC + + +AM+ +G
Sbjct: 386 EAVGVIEAPRGTLLQRYEVDEAGRIRRCTLLLSTRNNSRAMDAALQGVAAQYCDGRRVTE 445
Query: 376 -QLADVSAILGSLDIVFGEV 394
LA + + + D
Sbjct: 446 DLLAHIEVAIRAFDPCLSCA 465
>gi|297740923|emb|CBI31105.3| unnamed protein product [Vitis vinifera]
Length = 765
Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats.
Identities = 105/264 (39%), Positives = 148/264 (56%), Gaps = 17/264 (6%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
YV+ M QEHA++ AVE+LL E+P+R Q IRVL+ EI RI +H L +TT AMDVGA TP
Sbjct: 51 YVSTMAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRISNHSLALTTHAMDVGASTPS 110
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA----LN 185
LW EEREKL+ FYER SG+RMHA++ RPGGV QD+P L + + +
Sbjct: 111 LWASEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCHVTCTELVADWAFSLIKAD 170
Query: 186 DISDLLTGNRIFKQRNVNI----GTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
++ LL+ +R + G ++ + G WD R++ PY+ +
Sbjct: 171 PLAFLLSKSRSNRACPSPYPLCLGAGSAQERPVLWWYGRHGLRERVCWDSRRAAPYDVHD 230
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
+ D D+P+G GD YDRY +R+ EMR+SV+II QC N++ G + A D K+ PP R
Sbjct: 231 QSDPDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQCPNQM----PSGMIKADDRKLCPPSR 286
Query: 302 ADMKRSMESLIHHFKLYTEGYHVP 325
S+ + I F + P
Sbjct: 287 -----SLGTPISFFGAVSFPVPPP 305
Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats.
Identities = 52/85 (61%), Positives = 63/85 (74%)
Query: 312 IHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFL 371
IHHF+ YTEG+ VP Y AVEAPKGE GV+L+S+G N+PYR KIRAPG AH Q ++ +
Sbjct: 681 IHHFEPYTEGFSVPAPSTYTAVEAPKGEIGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSM 740
Query: 372 CKGHQLADVSAILGSLDIVFGEVDR 396
K H ADV I+G+ DIV GEVDR
Sbjct: 741 SKHHMPADVVTIIGTQDIVSGEVDR 765
>gi|312982538|gb|ADR30127.1| HoxH [Aphanothece halophytica]
Length = 396
Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats.
Identities = 55/393 (13%), Positives = 99/393 (25%), Gaps = 73/393 (18%)
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG--- 124
+ + P++ A A +K+L +++P G+ +R L + SH L+ +
Sbjct: 1 ICGICPVSHLLASAKTGDKILAVQVPPAGEKLRRLMNLGQITQSHALSFFHLSSPDFLLG 60
Query: 125 ----------------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE 168
G R+ E ++HAA+ PGGV + E
Sbjct: 61 FDSDPQSRNVFGLIQSDPELARAGIRLRQFGQKIIEILGARKIHAAWAVPGGVRTPLSEE 120
Query: 169 LVEDIGCWCDSFPSALNDISDLLTGN-RIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA 227
I L F G G G
Sbjct: 121 GRNWILERLPEARQTTEQALALFKKLLDQFSTEADVFGKFPSLFMGLVAPDGTWEHYGGQ 180
Query: 228 -----------------------------AWDLRKSQPYECYSELDFDIPIGKHGDCYDR 258
W K Y+ D +G R
Sbjct: 181 IRFMDSEGNIVADGLHEDNYADFIGEAVEPWSYLKFPYYKPMGYPDGMYRVGP----LAR 236
Query: 259 YLVRMMEMRESVKIIRQCV-NRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKL 317
+ E+ Q + +R + ++V A +E ++ L
Sbjct: 237 VNICERFGTEAADRELQELRDRAGARVATSSFFYHYARLVEILGAI--DRIEQFMYDPDL 294
Query: 318 YTEGYHVPVG----EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME---- 369
+ G E EAP+G + + + + + AM
Sbjct: 295 MSPRVRAEAGINSLEGIGVSEAPRGTLFHHYNVNENGLIEKVNLIIATGQNNLAMNRTIT 354
Query: 370 ----FLCKGHQLAD-----VSAILGSLDIVFGE 393
G+++A+ V A + + D
Sbjct: 355 QIAQHYINGNEIAEGMLNRVEAGIRAFDPCLSC 387
>gi|332296152|ref|YP_004438075.1| Hydrogen dehydrogenase [Thermodesulfobium narugense DSM 14796]
gi|332179255|gb|AEE14944.1| Hydrogen dehydrogenase [Thermodesulfobium narugense DSM 14796]
Length = 510
Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats.
Identities = 52/450 (11%), Positives = 109/450 (24%), Gaps = 79/450 (17%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD V+ + L RG E+ ++ + + V
Sbjct: 37 LEGHGKISIFLDEKGNVDNAFFQVVEL-RGYERFVQGMPIEEVPRTVSTICGVCRAVHFT 95
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP---------- 128
A A + + +E + IR L+ + H + + P
Sbjct: 96 ASMKASDGVYNVEPTPTARKIRELFFNAHYVEDHAAILYALGFPDFVVGPTANPAERNLI 155
Query: 129 ----------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
++R + E G +H PGG + + + ++I +
Sbjct: 156 GLVNAVGAETGKLVLKKRYAAVKILEMLGGKPIHPVAALPGGWSKRVTQDERKEIMALAE 215
Query: 179 SFPS----ALNDISDLLTGNRIFK------------------QRNVNIGTVKLEDAWGWG 216
L D++ N + N + +
Sbjct: 216 EMVELGQLTLKIFEDVVLKNPEYVKLVTGDVYKVVTNYLGSVDENDKVAFYDGTQKFIDT 275
Query: 217 FSGVMIRGSGAAW----------DLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEM 266
+ R G + PY + G Y + + +
Sbjct: 276 NGKEIARFKGKEYLNYISERVLPWSYLKMPYLKQKGWKG-VVDGPDTSLYSVGPLPRLNV 334
Query: 267 R--ESVKIIRQCVNRLLGKNKVGPVS----ASDPKIVPPKRADMKRSMESLIHHFKLYTE 320
+ +Q ++ PV + + A ++ + L
Sbjct: 335 ASGMPTPLAQQAYEKMFDVFGHKPVHNIMGYHWARAIELLCAA--ENIREIAKDESLCNP 392
Query: 321 GYHV---PVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGH-- 375
P E VEAP+G + ++D + + + + K
Sbjct: 393 DVRSKLGPASEGVGIVEAPRGTLIHHYVTDEKGIVEKANLIVATTHNKGPINVAVKRAAQ 452
Query: 376 -----------QLADVSAILGSLDIVFGEV 394
L V D+
Sbjct: 453 NFIKNGVVNEGLLNMVELAYRPYDLCLACA 482
>gi|332159192|ref|YP_004424471.1| cytochrome-c3 hydrogenase alpha chain [Pyrococcus sp. NA2]
gi|331034655|gb|AEC52467.1| cytochrome-c3 hydrogenase alpha chain [Pyrococcus sp. NA2]
Length = 412
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 60/398 (15%), Positives = 112/398 (28%), Gaps = 27/398 (6%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G+ + + ++ V+ V I R E L + + R+ + + A
Sbjct: 11 VEGIGKAEIVIENGSVKEVRVKILEGPRFFELLTVGRNYWDVPDIEARICAICYASHSIA 70
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTT------------QAMDVGALT 127
A+EK LGIE+P + +R L I SH L++ +M
Sbjct: 71 SVRAIEKALGIEVPESVEKLRELALLGEIIESHALHLYLLALPDVYGYPDVISMLSKFGE 130
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
G + E G +H +PGG + E + I ++ I
Sbjct: 131 LVKEGLAIKAFGNTIRELIGGREIHGINIKPGGFGRYPTEEELGTIAKHANALVRFAKRI 190
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ + G R + D Q Y +
Sbjct: 191 VSVFASQEARGAKVEIPMVTSEYLWGDELIVG-NERIQYESLDEVPVQ-YSFAKHTYYKG 248
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
G L + ES ++++ +++ + A ++V + +
Sbjct: 249 KPIFVGALARLLLKGDRLVGESSRLLKAYKDKIESGYVIYNNLAQAIELVYALERVSELA 308
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
E + + GE VEAP+G + + P +
Sbjct: 309 SEIASEGIEKGSGEASEDSGEGIGYVEAPRGVLVHHYRI-EKGRVVWSNTITPTAFNQGM 367
Query: 368 MEFLCK-------GHQLAD-----VSAILGSLDIVFGE 393
ME G + D + I+ + D
Sbjct: 368 MERSLLEDAKRMFGREPEDRFKNRLEEIVRAFDPCISC 405
>gi|15897891|ref|NP_342496.1| formate hydrogenlyase subunit 5 (hycE) [Sulfolobus solfataricus P2]
gi|227830171|ref|YP_002831951.1| formate hydrogenlyase subunit 5 (HycE) [Sulfolobus islandicus
L.S.2.15]
gi|284173588|ref|ZP_06387557.1| formate hydrogenlyase subunit 5 (HycE) [Sulfolobus solfataricus
98/2]
gi|13814204|gb|AAK41286.1| Formate hydrogenlyase subunit 5 (hycE) [Sulfolobus solfataricus P2]
gi|227456619|gb|ACP35306.1| formate hydrogenlyase subunit 5 (HycE) [Sulfolobus islandicus
L.S.2.15]
gi|261602600|gb|ACX92203.1| formate hydrogenlyase subunit 5 (HycE) [Sulfolobus solfataricus
98/2]
Length = 391
Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats.
Identities = 83/384 (21%), Positives = 131/384 (34%), Gaps = 50/384 (13%)
Query: 13 FGPQHPAAHGVLRLILELDGEIV--ERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
+GP ++ I+ +GE + + +R E +I T A+ +R++
Sbjct: 51 YGPSAGGLLETIKFIITTNGEKILGIDAEV---YKNR--EIVISGLTVDDALLRVERINA 105
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ ++ LAVE L +E QL R+ E+ RI +HL ++ P
Sbjct: 106 PFSASHTISFLLAVEDSLELEQDYPTQLKRIAEIELERIRNHLFVISRLTETTSLNVPTY 165
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
EK+ + G R GV+ D + I F I D
Sbjct: 166 HLLHLVEKVNRLIGKMCGHRYFFGVNAINGVNCDF--GNLLRIIDITKEFKQ----IFDG 219
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
L +RIF R G + E++ G R +G A+D RK Y +L F I
Sbjct: 220 LLESRIFIDRLQENGKIIDENSI-----GPAARAAGLAYDARKDFKALPYEDLGFRTVIT 274
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
+ D + R+LVR ME+ ES KI+ ++K S
Sbjct: 275 QEADSFGRFLVRGMEIIES------------------------AKILVELHDEIKNSNNE 310
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
+ K GE A VE+P G+ Y+ + + P +L
Sbjct: 311 RGKNHKQGG-------GEGLARVESPSGDLAYYVKLN-NGIIDSVSLLTPSQVNLNLFLK 362
Query: 371 LCKGHQLADVSAILGSLDIVFGEV 394
D S I E+
Sbjct: 363 SVINTIFTDFQFNWESFGIWVSEI 386
>gi|227827479|ref|YP_002829259.1| formate hydrogenlyase subunit 5 (HycE) [Sulfolobus islandicus
M.14.25]
gi|229578986|ref|YP_002837384.1| formate hydrogenlyase subunit 5 (HycE) [Sulfolobus islandicus
Y.G.57.14]
gi|229582261|ref|YP_002840660.1| formate hydrogenlyase subunit 5 (HycE) [Sulfolobus islandicus
Y.N.15.51]
gi|229584693|ref|YP_002843195.1| formate hydrogenlyase subunit 5 (HycE) [Sulfolobus islandicus
M.16.27]
gi|238619635|ref|YP_002914461.1| formate hydrogenlyase subunit 5 (HycE) [Sulfolobus islandicus
M.16.4]
gi|227459275|gb|ACP37961.1| formate hydrogenlyase subunit 5 (HycE) [Sulfolobus islandicus
M.14.25]
gi|228009700|gb|ACP45462.1| formate hydrogenlyase subunit 5 (HycE) [Sulfolobus islandicus
Y.G.57.14]
gi|228012977|gb|ACP48738.1| formate hydrogenlyase subunit 5 (HycE) [Sulfolobus islandicus
Y.N.15.51]
gi|228019743|gb|ACP55150.1| formate hydrogenlyase subunit 5 (HycE) [Sulfolobus islandicus
M.16.27]
gi|238380705|gb|ACR41793.1| formate hydrogenlyase subunit 5 (HycE) [Sulfolobus islandicus
M.16.4]
Length = 391
Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats.
Identities = 83/384 (21%), Positives = 131/384 (34%), Gaps = 50/384 (13%)
Query: 13 FGPQHPAAHGVLRLILELDGEIV--ERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
+GP ++ I+ +GE + + +R E +I T A+ +R++
Sbjct: 51 YGPSAGGLLETIKFIITTNGEKILGIDAEV---YKNR--EIVISGLTVDDALLRVERINA 105
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ ++ LAVE L +E QL R+ E+ RI +HL ++ P
Sbjct: 106 PFSASHTISFLLAVEDSLELEQDYPTQLKRIAEIELERIRNHLFVISRLTETASLNVPTY 165
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
EK+ + G R GV+ D + I F I D
Sbjct: 166 HLLHLVEKVNRLIGKMCGHRYFFGVNAINGVNCDF--GNLLRIIDITKEFKQ----IFDG 219
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
L +RIF R G + E++ G R +G A+D RK Y +L F I
Sbjct: 220 LLESRIFIDRLQENGKIIDENSI-----GPAARAAGLAYDARKDFKALPYEDLGFRTVIT 274
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
+ D + R+LVR ME+ ES KI+ ++K S
Sbjct: 275 QEADSFGRFLVRGMEIIES------------------------AKILVELHDEIKNSNNE 310
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
+ K GE A VE+P G+ Y+ + + P +L
Sbjct: 311 RGKNHKQGG-------GEGLARVESPSGDLAYYVKLN-NGIIDSVSLLTPSQVNLNLFLK 362
Query: 371 LCKGHQLADVSAILGSLDIVFGEV 394
D S I E+
Sbjct: 363 SVINTIFTDFQFNWESFGIWVSEI 386
>gi|289064376|gb|ADC80560.1| bidirectional NAD(P)-linked NiFe hydrogenase [uncultured
Rhodobacteraceae bacterium]
Length = 405
Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats.
Identities = 59/399 (14%), Positives = 109/399 (27%), Gaps = 74/399 (18%)
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEI---PIRGQLIRVLYSEIGRILSHLLNVTTQAMD-- 122
+ + P++ A A A+++++GI+ Q IR L SH L+ A
Sbjct: 1 ICGICPVSHHLAAAKAIDQIVGIDPEDLSPPAQKIRKLLHFGQVFQSHALHFFYLASPDL 60
Query: 123 -----------------VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDI 165
+ L G R+ +G R+H PGGVH+ +
Sbjct: 61 LFGVDADPAKRNVAEVAIEHLDLAKKGILMRKFGQEIIRVIAGKRIHGISAVPGGVHKKV 120
Query: 166 PPELVEDIG---------CWCDSFPSALNDISDLLTGNRIFKQRNV-----NIGTVKLED 211
+ + + ++ + D N + ++G V E+
Sbjct: 121 SLQERDYFLNSKEIPSVDAMINWTREIIDFLKDYHDANSSWLDTFAEYDSGHLGLVNKEN 180
Query: 212 AWGWGFSGVMI---------------------RGSGAAWDLRKSQPYEC-YSELDFDIPI 249
+ + G + G PY +
Sbjct: 181 GFLELYDGNLRALDANGKVLLNDIPDTEYIQYFNEGVEKWSYLKFPYLKDLGREKGWNRV 240
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
G + E I + + N S I A+M +S+
Sbjct: 241 GPLARVNICNGIETAYAEEERLIFK--LATNGKINNKTMYSHWARLIEVLYCAEMMKSLL 298
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
+ I GE +EAP+G + D ++ RC + + +AM
Sbjct: 299 NDIDILSDDLIRKGERRGEGIGIIEAPRGTLIHHYEVDEKDRITRCNLIVSTTHNNEAMN 358
Query: 370 FLCK--GHQLAD------------VSAILGSLDIVFGEV 394
K + + D V + + D
Sbjct: 359 QAVKWVANNVMDEKPEITEDMLNQVEVAIRAYDPCLSCA 397
>gi|58038761|ref|YP_190725.1| hypothetical protein GOX0286 [Gluconobacter oxydans 621H]
gi|58001175|gb|AAW60069.1| Hypothetical protein GOX0286 [Gluconobacter oxydans 621H]
Length = 479
Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats.
Identities = 71/376 (18%), Positives = 131/376 (34%), Gaps = 42/376 (11%)
Query: 19 AAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G L L E+ V V+ G HRG + +T +A+P R+ +
Sbjct: 144 GLSGPLELSFEVLKGKVRSVEVCAGGAHRGVVSRLLGRTPEEAMPLVSRMTAGGFVAHPL 203
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREK 138
A+A AV + G+ + + ++ EI R+ HL ++ A V A RE
Sbjct: 204 AFARAVAQARGLVPGPGIRDVWMVLLEIERMSLHLFDMARTARGVDAELLATHCDHAREA 263
Query: 139 LMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFK 198
+ SR +D +V + L + +L +R+F
Sbjct: 264 IARACAEQGVSRRLMD-MVACDGFRDGLE-IVPLAQAVHAAMQPRLAALEEL---HRVFA 318
Query: 199 QRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDR 258
R + + A + GV R SG + D+R+ + GD R
Sbjct: 319 PRLDGFAVLDVRLAERFAVGGVTGRASGRSMDMRRRE--AGMRLEALRATGSSQGDARAR 376
Query: 259 YLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLY 318
+R+ E+R+S+K++ + + G + D + P +
Sbjct: 377 EGLRLAEIRDSLKLLERIL---------GSIGLEDDEPAPDRTD---------------- 411
Query: 319 TEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLA 378
E E +G+ ++ + +R PG + L + + +G+ ++
Sbjct: 412 ---------EGIGVAEGARGDVWYWVRLKE-GRIESLHVRDPGVSLLPVLGAMLRGYPVS 461
Query: 379 DVSAILGSLDIVFGEV 394
V A LGS+ I +
Sbjct: 462 RVPAALGSIGISPAGI 477
>gi|257053667|ref|YP_003131500.1| nickel-dependent hydrogenase large subunit [Halorhabdus utahensis
DSM 12940]
gi|256692430|gb|ACV12767.1| nickel-dependent hydrogenase large subunit [Halorhabdus utahensis
DSM 12940]
Length = 439
Score = 143 bits (362), Expect = 3e-32, Method: Composition-based stats.
Identities = 56/413 (13%), Positives = 127/413 (30%), Gaps = 41/413 (9%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +++ + ++ + + R E ++ ++F ++ R+ + ++ A
Sbjct: 15 VEGHGSIVVNAEDGELDTCEWQVVESPRYFESMLVGRSFEESHHVTSRICAICSVSHTIA 74
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG------------ALT 127
A E LG+ + + + +R L + SH+L++ A+
Sbjct: 75 SLQATEAALGVSVSEQDRRLRKLALYGETLQSHVLHLGYLALPDLVGEKSVLPLADTHED 134
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
+ E +G +HA PGG+ Q ++ + + A+ ++
Sbjct: 135 ELETVIDLHRLGNELTEVVTGRSVHAQRLVPGGISQLPEESELQALLDRLVNSWDAVAEL 194
Query: 188 SDLL----TGNRIFKQRNVNIGTVKLEDAWG---WGFSGVMIRGSGAAWDLRKSQPYECY 240
+DLL F++ I E+ +S + + + ++ +
Sbjct: 195 ADLLAVLADEFPAFERETEYISLTHPEEYAFAEGTIYSSDVGEIPVSDYRDVANEYVVEH 254
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
S F + + + + L P + ++V
Sbjct: 255 STAKFARHERESYMVGALARFNNNADQLAPRATEIADRFGLDAPVHNPYLNNVAQLVEVA 314
Query: 301 R--ADMKRSMESLIHHFKLYTEGYHVP-----VGEVYAAVEAPKGEFGVYLISDGGNKPY 353
+ R +E+L+ YHVP G+ A+E P+G D +
Sbjct: 315 HLLGESVRLIEALLDDGLTPQSNYHVPEIDPTAGQGIGAIEVPRGVLFHEYAYDDTGEVT 374
Query: 354 RCKIRAPGYAHLQA----MEFLCKGHQLAD---------VSAILGSLDIVFGE 393
P + ME L + D + ++ + D
Sbjct: 375 EANCVIPTNQNHGNIQRDMETLVP--TIVDHPEDEIKHSLEMLVRAYDPCISC 425
>gi|260460223|ref|ZP_05808475.1| nickel-dependent hydrogenase large subunit [Mesorhizobium
opportunistum WSM2075]
gi|259033868|gb|EEW35127.1| nickel-dependent hydrogenase large subunit [Mesorhizobium
opportunistum WSM2075]
Length = 532
Score = 143 bits (362), Expect = 4e-32, Method: Composition-based stats.
Identities = 62/501 (12%), Positives = 112/501 (22%), Gaps = 128/501 (25%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + +++ +V L RG E ++ K + R + +
Sbjct: 16 VEGDLDVRVDIQNGVVVNA-WTQAELFRGFEIILRDKDPQAGLVVTPRACGICGASHLTC 74
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKL 139
A A++ E+P L R L + + S + M E +
Sbjct: 75 AAWALDTAWKAEVPRNAILARNLGQIVESLQSLPRHHYGLFMIDYTHKNYSHSKYYEEAV 134
Query: 140 MVF---------------------YERASGSRMHAAYFRP-------------------G 159
+ Y G H++Y P
Sbjct: 135 KRWSPYTGTNYELGVTISGRPVEIYALLGGQWPHSSYMVPGGVMCAPTLTDVTRAWSILE 194
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIF-----------------KQRNV 202
++ + + +D L +
Sbjct: 195 HFRRNWMEPVWLGCSFERYEQIRSYDDFMAWLDERPEHANSDLGMFWRMSVDVGVDKYGK 254
Query: 203 NIGTVKLEDAWGWGFSG----------VMIRGSGAAW------------DLRKSQPYECY 240
G ++ SG R+ + Y
Sbjct: 255 GHGKYVSWGYLPHEDKYNRPTIENRNASLLMKSGVYDGAADTHKLMDQVHTREDVLHAWY 314
Query: 241 SELDFDIPIGKHG-------------DCYDRYLVRMMEMR-ESVKIIRQCVNRL------ 280
E P + + + R E+ + RQ +
Sbjct: 315 DEPSGKHPFERTTKAVGKNPVEYENQYSWSTAVRHDNNGRLEAGPLARQLIAGGSHGESW 374
Query: 281 ---------LGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP---VGE 328
+ K G + + R E + F+L Y P G
Sbjct: 375 QHHDPLVLDMYKKLGGASVMLRHFARMHEGVKLYRQAEHALREFRLNDPWYVKPTEKDGR 434
Query: 329 VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLAD 379
+ A EA +G ++ K +I AP + L +E G +AD
Sbjct: 435 GWGATEAIRGALCHWIEV-QNGKIKNYQIIAPTTWNVGPRSDGGELGPIEQALIGTPIAD 493
Query: 380 ------VSAILGSLDIVFGEV 394
V + S D
Sbjct: 494 PSDPVEVGHVCRSYDSCLVCT 514
>gi|260909225|gb|ACX54200.1| NdhH [Oryza sativa Japonica Group]
gi|260909227|gb|ACX54201.1| NdhH [Oryza sativa Indica Group]
Length = 139
Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats.
Identities = 61/144 (42%), Positives = 83/144 (57%), Gaps = 5/144 (3%)
Query: 253 GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLI 312
GD RYLVR+ EMRES+KII+Q V ++ G GP + + + E
Sbjct: 1 GDSLARYLVRIGEMRESIKIIQQAVEKIPG----GPYENLEVRRFKKAKNSEWNDFE-YR 55
Query: 313 HHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLC 372
K + + + E+YA VEAPKGE G+YL+ D P+R KIR PG+ +LQ + L
Sbjct: 56 FLGKKPSPNFELSKQELYARVEAPKGELGIYLVGDDSLFPWRWKIRPPGFINLQILPQLV 115
Query: 373 KGHQLADVSAILGSLDIVFGEVDR 396
K +LAD+ ILGS+DI+ GEVDR
Sbjct: 116 KKMKLADIMTILGSIDIIMGEVDR 139
>gi|284997590|ref|YP_003419357.1| formate hydrogenlyase subunit 5 (HycE) [Sulfolobus islandicus
L.D.8.5]
gi|284445485|gb|ADB86987.1| formate hydrogenlyase subunit 5 (HycE) [Sulfolobus islandicus
L.D.8.5]
Length = 391
Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats.
Identities = 82/384 (21%), Positives = 130/384 (33%), Gaps = 50/384 (13%)
Query: 13 FGPQHPAAHGVLRLILELDGEIV--ERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
+GP ++ I+ +GE + + +R E +I T A+ +R++
Sbjct: 51 YGPSAGGLLETIKFIITTNGEKILGIDAEV---YKNR--EIVISGLTVDDALLRVERINA 105
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ ++ LAVE L +E QL R+ E+ RI +HL ++ P
Sbjct: 106 PFSASHTISFLLAVEDSLELEQDYPTQLKRIAEIELERIRNHLFVISRLTETTSLNVPTY 165
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
EK+ + G R GV+ D + I F I D
Sbjct: 166 HLLHLVEKVNRLIGKMCGHRYFFGVNAINGVNCDF--GNLLRIIDITKEFKQ----IFDG 219
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
L +RIF R G + E++ G R +G +D RK Y +L F I
Sbjct: 220 LLESRIFIDRLQENGKIIDENSI-----GPAARAAGLTYDARKDFKALPYEDLGFRTVIT 274
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
+ D + R+LVR ME+ ES KI+ ++K S
Sbjct: 275 QEADSFGRFLVRGMEIIES------------------------AKILVELHDEIKNSNNE 310
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
+ K GE A VE+P G+ Y+ + + P +L
Sbjct: 311 RGKNHKQGG-------GEGLARVESPSGDLAYYVKLN-NGIIDSVSLLTPSQVNLNLFLK 362
Query: 371 LCKGHQLADVSAILGSLDIVFGEV 394
D S I E+
Sbjct: 363 SVINTIFTDFQFNWESFGIWVSEI 386
>gi|289064349|gb|ADC80550.1| bidirectional NAD(P)-linked NiFe hydrogenase [uncultured
Rhodobacteraceae bacterium]
Length = 407
Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats.
Identities = 64/399 (16%), Positives = 122/399 (30%), Gaps = 74/399 (18%)
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEI---PIRGQLIRVLYSEIGRILSHLLNVTTQAMD-- 122
+ + P++ A A A+++++G+E I Q IR L SH L+ A
Sbjct: 1 ICGICPVSHHLAAAKAIDQIVGLEPEDLSITAQKIRKLLHFGQIFQSHALHFFYLASPDL 60
Query: 123 -----------------VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDI 165
+ G R+ + +G R+H PGGVH+ I
Sbjct: 61 LFGSDASPSKRNVVGVAMDYPELAKKGILMRKFGQEMIKMIAGKRIHGISATPGGVHKKI 120
Query: 166 PPELVEDIGC-----WCDSFPSALNDISDLL----TGNRIFKQRNV-----NIGTVKLED 211
+ + D+ +I + + + N + R ++G V +
Sbjct: 121 SAQERDFFLNGKEIPSVDAMIEWSKEILEFIKVYHSKNEQWFNRFASFPSGHLGLVNKKT 180
Query: 212 AWGWGFSGVMIRGS--------GAAWDLRKSQPYEC-----YSELDFDIPIGKHGDCYDR 258
+ G + D ++ YE Y + + +G+
Sbjct: 181 NELELYDGYLRAIDANGKMTLHDIHSDDYQNHFYEGVEKWSYLKFPYLKHLGREQGWNRV 240
Query: 259 YLVRMMEMRESVKIIRQCVNRL------LGKNKVGPVSASDPKIVPPK-RADMKRSM--E 309
+ M + E + RL GK G + + +++ A+M + + +
Sbjct: 241 GPLARMNVCEGISTPFAAFERLSFLNATGGKTNNGSMYSHWARLIELLHCAEMMKDLLED 300
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
I L G E +EAP+G + D ++ RC + + +AM
Sbjct: 301 DDILGSDLVKRGTRRN--EGIGIIEAPRGTLIHHYQVDEKDRITRCNLIVSTTHNNEAMN 358
Query: 370 FLCK--------------GHQLADVSAILGSLDIVFGEV 394
K L V + + D
Sbjct: 359 QAVKSVANEIIDGKPKVSDAMLNQVEVAIRAYDPCLSCA 397
>gi|297568654|ref|YP_003689998.1| Cytochrome-c3 hydrogenase [Desulfurivibrio alkaliphilus AHT2]
gi|296924569|gb|ADH85379.1| Cytochrome-c3 hydrogenase [Desulfurivibrio alkaliphilus AHT2]
Length = 522
Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats.
Identities = 71/504 (14%), Positives = 122/504 (24%), Gaps = 132/504 (26%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L++ ++ ++ + GLL RG EK + A R+ V P A
Sbjct: 18 VEGHLKIETRVEDGVITQAR-AAGLLFRGLEKALIGYDARVAQQVTQRVCGVCPYAHAEA 76
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILS---HLLNVTTQAMDV------------- 123
ALA+E +GI GQL+R L + + H ++
Sbjct: 77 AALALEDAMGIRPNANGQLLRNLITGAYLVHDSLLHFYQLSALDFIDIEAVLAYKGGDPV 136
Query: 124 -------------------GALTPPLWG---------------------FEEREKLMVFY 143
GA P + F L
Sbjct: 137 LAAVRQWVEEEVRSSRIFPGAPFLPRYRHDDQLPGDTDSLLLVRNYFANFTLLADLQKMV 196
Query: 144 ERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL-----NDISDLLTGNRIFK 198
G H GGV ++ + + DI + +
Sbjct: 197 AIFGGKAPHPVAIEAGGVTTRPTLGMLAQYRTLLRRAEAFVLGPYREDIFSVCRAFPHYF 256
Query: 199 QRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQP-----------YECY------- 240
Q G G +G A + QP Y Y
Sbjct: 257 QEGRGYGNFLSFPFLPE-ADGDNHLFAGGALLNGEHQPLELDAINEDHTYAFYRQQSGTA 315
Query: 241 ------------SELDFDIPIGKHG--DCYDRYLVRMMEMRESVKIIR----------QC 276
+F + G + R E+ E R Q
Sbjct: 316 LPPLATSRLTPLDWQEFQREEQRKGGKYSWSRAPRYRGEVMEVGAAARIVNSYHQGGNQA 375
Query: 277 VNRLLGKNKV----------GPVSASDPKIVPPKRA--DMKRSMESLIHHFKLYTEGYHV 324
+ L+ + + + +K +E + + E
Sbjct: 376 LKELVDHTNRELGITVADYNSVMGRHLSRYLSAALIIGRLKEQLEMVKDGVLGFEEREVP 435
Query: 325 PVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGH 375
EA +G G +L +D ++ P + A+E + G
Sbjct: 436 RNARGVGITEASRGALGHWLETDKDGLIKNYELVVPSTWNFGPKDAAGKPGAVEKMLLGT 495
Query: 376 QLAD------VSAILGSLDIVFGE 393
++++ + I S D
Sbjct: 496 RISNPEQPLEAARIARSADPCIAC 519
>gi|323477270|gb|ADX82508.1| formate hydrogenlyase subunit 5 (HycE) [Sulfolobus islandicus
HVE10/4]
Length = 391
Score = 142 bits (359), Expect = 8e-32, Method: Composition-based stats.
Identities = 83/384 (21%), Positives = 131/384 (34%), Gaps = 50/384 (13%)
Query: 13 FGPQHPAAHGVLRLILELDGEIV--ERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
+GP ++ I+ +GE + + +R E +I T A+ +R++
Sbjct: 51 YGPSAGGLLETIKFIITTNGEKILGIDAEV---YKNR--EIVISGLTVDDALLRVERINA 105
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ ++ LAVE L +E QL R+ E+ RI +HL ++ P
Sbjct: 106 PFSASHTISFLLAVEDSLELEQDYPTQLKRIAEIELERIRNHLFVISRLTETASLNVPTY 165
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
EK+ + G R GV+ D + I F I D
Sbjct: 166 HLLHLVEKVNRLIGKMCGHRYFFGVNAINGVNCDF--GNLLRIIDITKEFKQ----IFDG 219
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
L +RIF R G + E++ G R +G A+D RK Y +L F I
Sbjct: 220 LLESRIFIDRLQENGKIIDENSI-----GPAARAAGLAYDARKDFKALPYEDLGFRTVIT 274
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
+ D + R+LVR ME+ ES KI+ ++K S
Sbjct: 275 QEADSFGRFLVRGMEIIES------------------------AKILVELHDEIKNSNNE 310
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
+ K GE A VE+P G+ Y+ + + P +L
Sbjct: 311 RGKNHKQGG-------GEGLARVESPSGDLAYYVKLN-NGIIDSVLLLTPSQVNLNLFLK 362
Query: 371 LCKGHQLADVSAILGSLDIVFGEV 394
D S I E+
Sbjct: 363 SVINTIFTDFQFNWESFGIWVSEI 386
>gi|325294575|ref|YP_004281089.1| Hydrogen dehydrogenase [Desulfurobacterium thermolithotrophum DSM
11699]
gi|325065023|gb|ADY73030.1| Hydrogen dehydrogenase [Desulfurobacterium thermolithotrophum DSM
11699]
Length = 486
Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 56/448 (12%), Positives = 112/448 (25%), Gaps = 74/448 (16%)
Query: 20 AHGVLRLILEL-DGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + L D ++ V + + G EKL++ + + V
Sbjct: 12 LEGHGKITVFLNDNGKIDEVFFQV-VEFMGYEKLVQNVPIEEVPRIASTICGVCRAVHFM 70
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSH--LLNVTTQAMDVGALTP-------- 128
A A +++ +E P + +R L I H +L + T
Sbjct: 71 ASLKAGDQIFSVEPPPVAKKLRKLLLSAHYIEDHTEILYAMGLPDFICGPTAPPEERNII 130
Query: 129 ----------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
E+R E G H A PGG +DI + V+++ +
Sbjct: 131 GVAKKLGKEFVKEILEKRFSAARIVEILGGKTTHPASAIPGGWSKDISEDEVKELQKLAE 190
Query: 179 SFPSALNDISDLLTGN-----RIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA------ 227
+L K V + + G
Sbjct: 191 DCLKLGKQSVELFKEIVVKNPEYSKLLKEETFNVATNYMGTVDKNNKVAYYEGIQKIISP 250
Query: 228 ------AWDLRKSQPYECYSELDFDIP-------IGKHG------------DCYDRYLVR 262
++ ++ Y + + +G G R+ V
Sbjct: 251 FGQEIGSFTDKEYLDYFAERTIQWSYAKFPYLKSVGWKGFIDGEGTPFCSVGPLARFNVS 310
Query: 263 MME-MRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK--RADMKRSMESLIHHFKLYT 319
+ K + V GK + + + +K +
Sbjct: 311 DGYSTPLAQKAYEEMVEFFGGKPVHNIFAYHWARAIEILNHAEIVKELVNDPEITNPNTC 370
Query: 320 EGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKG----- 374
GE +EAP+G + +D + P + +++ K
Sbjct: 371 NPVGKVSGEGVGIIEAPRGTLIHHYKTDENAMVTDANMIVPTTFNNGSIQIAVKKAAKFF 430
Query: 375 --------HQLADVSAILGSLDIVFGEV 394
+L + D+
Sbjct: 431 FDDGKFDEAKLNLIEMAHRPYDLCLACA 458
>gi|289064374|gb|ADC80559.1| bidirectional NAD(P)-linked NiFe hydrogenase [uncultured
Burkholderiales bacterium]
Length = 396
Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 48/388 (12%), Positives = 98/388 (25%), Gaps = 61/388 (15%)
Query: 68 LDYVAPMNQEHAYALAVEKLLGIE-IPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV--- 123
+ + P++ A A A + L+G + + IR L + SH L+
Sbjct: 1 ICGICPVSHHLAAAKATDMLVGTTQLTPTAEKIRRLMHYGQTLQSHALHFFHLCSPDLLF 60
Query: 124 ----------------GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP 167
G R+ G R+H PGGV++ +
Sbjct: 61 GFDDEIRHRNIVGVIEDHPEIAKQGVLLRKYGQEVIRLTCGKRIHGTGAIPGGVNKSLNR 120
Query: 168 ELVEDIGCWCDSFPSALNDISDLLTG-NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSG 226
+ + + D +L+ ++ ++ G G G
Sbjct: 121 DEINYLQKDIGQIVQWGQDAVELIKRIFFEQLDYHMAFASIDSNMLSMIGAYGEFDIYDG 180
Query: 227 ----------AAWDLRKSQPYECYSELDFDIPIGK-----------HGDCYDRYLVRMME 265
+D Y Y G L R+
Sbjct: 181 GLRATDANGAIIFDHVDPGHYNDYLREGVKNWSYMKFPFIKFLGAEQGWYRVGPLARVNN 240
Query: 266 MRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESL--IHHFKLYTEGYH 323
+ + R+ G + + ++ E++ + +
Sbjct: 241 CDYFSAPLAEAQRRIFKDAGHGRPVQATLAYHWARLIELLYCTEAIRDLLLDPDISGKEL 300
Query: 324 VPVGE----VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK------ 373
+ G+ +EAP+G + D + + + QAM +
Sbjct: 301 LNKGDLQHCGIGVIEAPRGTLFHHYEMDDDGIVNKANLIVSTTNNNQAMNKSIRQVAGQY 360
Query: 374 --GHQLAD-----VSAILGSLDIVFGEV 394
G QL + + + + D
Sbjct: 361 LDGQQLTEPLLNQIEVAIRAYDPCLSCA 388
>gi|226225818|ref|YP_002759924.1| NiFe uptake hydrogenase large subunit [Gemmatimonas aurantiaca
T-27]
gi|226089009|dbj|BAH37454.1| NiFe uptake hydrogenase large subunit [Gemmatimonas aurantiaca
T-27]
Length = 534
Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats.
Identities = 56/503 (11%), Positives = 118/503 (23%), Gaps = 130/503 (25%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L L + + +V + RG E ++ K + R+ + + +
Sbjct: 13 VEGDLDLRVTIRDGVVTDA-WTEASMFRGFEIILRGKDPQAGLIVTPRICGICGGSHLYK 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV---------------- 123
A A++ +P LIR + +LS
Sbjct: 72 AAYALDTAWKTHLPHNATLIRNIAQACETLLSIPRWFYALFAVDLINKKYAHLPEYDEVV 131
Query: 124 -----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRP-------------------G 159
T G K + Y G H+++ P
Sbjct: 132 KRFAPFVGTSFEPGVTLSAKPVEVYAIFGGQWPHSSFMIPGGVMCAPSLSDVTRSIAILD 191
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFK-----------------QRNV 202
++ + + ND+ N + +
Sbjct: 192 MWRREWLEKQWLGCSIDRWLEIKSWNDMLAWAEENESQRNSDCGLFIRFAQRAGLDKYGQ 251
Query: 203 NIG-------TVKLEDAWGWGFSGVMI-------RGSGAAWDL------RKSQPYECYSE 242
+G + G G+A+ R+ + Y
Sbjct: 252 GVGAFLSTGTFFDPKLYERPTVEGRNAALMSRAGIYDGSAFHDFDHLNVREDTAHSFYRG 311
Query: 243 LDFDIPIGKHGD-------------CYDRYLVRM-----MEMRESVKIIRQCVN------ 278
P D + + E+ + RQ +
Sbjct: 312 DKSLHPWQGETDPIDPLDGHKQGKYSWAKSPRYDVPGKGAIPLEAGPLARQIIAGRGDAA 371
Query: 279 --RLLGKNKVGPVSASDPKIVPPKRADMKR----------SMESLIHHFKLYTEGYHVPV 326
+ + + P I+ A M ++ + H + Y + +
Sbjct: 372 AHQDYDPFILDAIQTVGPSILTRVMARMHEAPKYFRLVRSWLDQIDLHDRFYNKPVELES 431
Query: 327 GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQL 377
G + + EA +G +++ K ++ P ++ ME G ++
Sbjct: 432 GRGFGSTEAARGSLSDWIVL-SDGKIENYQVITPTAWNIGPRDRLGRHGPMEAAFIGAEI 490
Query: 378 AD------VSAILGSLDIVFGEV 394
D + + S D
Sbjct: 491 QDPTDPIEMGHVARSYDSCLVCT 513
>gi|78777634|ref|YP_393949.1| nickel-dependent hydrogenase, large subunit [Sulfurimonas
denitrificans DSM 1251]
gi|78498174|gb|ABB44714.1| Nickel-dependent hydrogenase, large subunit [Sulfurimonas
denitrificans DSM 1251]
Length = 417
Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats.
Identities = 56/385 (14%), Positives = 111/385 (28%), Gaps = 40/385 (10%)
Query: 47 RGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLL-GIEIPIRGQLIRVLYSE 105
R E +++ K A+ R+ + A A+E + + + ++IR L
Sbjct: 34 RNIENILKGKRAFDALVINPRVCGICGHAHLMATVQALESCYDNLILSDKAKIIRELTLN 93
Query: 106 IGRILSHLLNVT-TQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQD 164
I +H T G L + + G H +Y GGV +
Sbjct: 94 FELIQNHFKWFYLTLYPLFGKKQQILKATYPSQLMSKAIAVIGGQYPHTSYAIVGGVACE 153
Query: 165 IPPELVEDIGCWCDSFPSALNDIS-----DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
I + + + + ++ T L++ G
Sbjct: 154 ITEIDLIKVQHYIAQTLKFVEQNLLKVESEVFLKTEDANSLYDGDLTEILDEIKNSELLG 213
Query: 220 V-------MIRGSGAAWDLRKSQPYECYSELD-FDIPIGKHGDCYDRYLVRMMEMRESVK 271
+ G + + KS + + D+ + + + + + E
Sbjct: 214 YGKSYDRFISFGENSFFKKGKSVKTKVTHNISLVDVKESQITSSFAKNVSFKDKYYEVGP 273
Query: 272 IIRQCVNRLLG-KNKVGPVSASDPKIVPPKRADMKRSME---SLIHHFKLYTEGYHVP-- 325
+ R +N+ + S + + ++ + +E LI L Y P
Sbjct: 274 LSRAMINKTPLIIDVHKKYGDSIFSRILARIYEISQLLEHSRGLIKKIDLSQPSYIEPSI 333
Query: 326 -----VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ--------AMEFLC 372
G Y+AVEA +G + +I P +L +
Sbjct: 334 DISKLSGSGYSAVEAARGTLIHRVEL-ESGIIKNYEIITPTQWNLSGGTRENHGVSQRAM 392
Query: 373 KGHQLADV---SAILGSLDIVFGEV 394
G L+DV + S D+
Sbjct: 393 VG--LSDVKIAELVFKSFDVCSVCT 415
>gi|312982540|gb|ADR30128.1| HoxH [Mastigocladus laminosus SAG 4.84]
Length = 395
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 59/392 (15%), Positives = 97/392 (24%), Gaps = 72/392 (18%)
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG--- 124
+ + P++ A +K+L +EIPI Q +R L + SH L+ +
Sbjct: 1 ICGICPVSHLLCAAKTGDKILAVEIPIAAQKLRRLMNLGQITQSHALSFFHLSSPDFLLG 60
Query: 125 ----------------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE 168
G R+ E ++H A+ PGGV +P E
Sbjct: 61 WDSDPGQRNIFGLIASDPELARQGIRLRQFGQKIIELLGAKKIHPAWSVPGGVRSPLPEE 120
Query: 169 LVEDIGCWCDSFPSALNDISDLLTGN-RIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA 227
I ++ L F N G G G+ G
Sbjct: 121 GRAWIRERLPESYQTIHTALALFKELLERFSTEVANFGEFPSLFMGLVGKDGLWEHYGGH 180
Query: 228 -----------------------------AWDLRKSQPYECYSELDFDIPIGKHGDCYDR 258
W K Y+ + +G
Sbjct: 181 IRFTDSQGNIVADNLREEDYQDYIGESVEKWSYLKFPYYKPLGYPEGIYRVGPLARLNVC 240
Query: 259 YLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLY 318
++ R V G ++V A +E+LI +
Sbjct: 241 SRFGTPGADGELREYRDRV----GGVATSSFYYHYARLVEILGA--LEGIEALIEDGDIV 294
Query: 319 TEGYHVPVG----EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME----- 369
+ G E EAP+G + D + + + AM
Sbjct: 295 SHRTRAQGGINALEGVGVSEAPRGTLFHHYHVDEDGLIEKVNLIIVTGNNNLAMNKTVAQ 354
Query: 370 ---FLCKGHQLAD-----VSAILGSLDIVFGE 393
GH + + V A + D
Sbjct: 355 IAKHCIHGHDIPEGMLNRVEAGIRCYDPCLSC 386
>gi|157737677|ref|YP_001490360.1| Ni/Fe-dependent hydrogenase, large subunit [Arcobacter butzleri
RM4018]
gi|157699531|gb|ABV67691.1| Ni/Fe-dependent hydrogenase, large subunit [Arcobacter butzleri
RM4018]
Length = 449
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 61/440 (13%), Positives = 115/440 (26%), Gaps = 67/440 (15%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +L I+ L RG E ++E K+ L A+ Y R+ + +A
Sbjct: 10 IEGEAKLNCSWKNGIIIDSRID-FLNFRGFEYILEDKSPLDALVYTPRICGICGQAHLNA 68
Query: 80 YALAVEKLL-----GIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV-----GALTPP 129
+EK +EI + +L+R + I I SH+ +
Sbjct: 69 AVEVLEKAYENIDEKLEITPKAKLLRQIGLNIEMIDSHIKWFYMFILPDIIKLNSNDLNI 128
Query: 130 LWGFEEREKLMVF---------YERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+ ++ L +G H++Y PGGV D + ++ +
Sbjct: 129 YEPLKGKKWLEACKVASETIKALAIIAGQWPHSSYMIPGGVMSDPTKMDLINMQNYLQIA 188
Query: 181 PSALNDIS-----DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQ 235
+ D D G +KL + + S +
Sbjct: 189 INFFEDSIVNTSLDNYLSFTSVDNFEKIGGDLKLFKDLAFKYELQNYGKSYNRFISLSET 248
Query: 236 PYECYSELDFDIPIG--------------------KHGDCYDRYLVRMMEMRESVKIIRQ 275
+ + + + E+ + R
Sbjct: 249 NLFKKGRFSSKVINKIDLSKILENSDSTFTLSGDNTQKHTWSKNVTYDDAFFETGPLARA 308
Query: 276 CVNRLLGKNKVGPVSASDPKIVPPKRAD----MKRSMESLIHHFKLYTEGYHVP------ 325
++ + R D + ++LI + P
Sbjct: 309 IISNRKFIKDIHKNFDDSAFTRVLARLDELAFLLEDTKNLISKVNTKEASFIKPKISLNK 368
Query: 326 --VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA--------MEFLCKGH 375
E +AVEA +G + K + P +L + G
Sbjct: 369 IDKVEAVSAVEATRGSLYHKIDI-EKGKIKLYDVITPTVWNLGPSNKKEQGIAQKAIIGT 427
Query: 376 QLADVS-AILGSLDIVFGEV 394
D++ IL S D+
Sbjct: 428 SSIDIAKIILRSFDVCSVCT 447
>gi|312284583|gb|ADQ64097.1| bidirectional NAD(P) linked NiFe hydrogenase [uncultured
Rhodobacteraceae bacterium]
Length = 403
Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats.
Identities = 65/401 (16%), Positives = 113/401 (28%), Gaps = 78/401 (19%)
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEI---PIRGQLIRVLYSEIGRILSHLLNVTTQAMD-- 122
+ + P++ A A A+++++GI + Q IR L SH L+ A
Sbjct: 3 ICGICPVSHHLAAAKAIDQIVGINPEDLSLTAQKIRKLLHFGQVFQSHALHFFYLASPDL 62
Query: 123 -----------------VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDI 165
+ L G R+ + +G R+H PGGVH+ I
Sbjct: 63 LFGVNAXPAKRNVAEVAIEHLDLAKKGILMRKFGQEIIKTIAGKRIHGISAVPGGVHKKI 122
Query: 166 PPEL------------VEDIGCWCDSFPSALNDISDLLTG--NRIFKQRNVNIGTVKLED 211
+ ++ + W L DL N K + ++G V E+
Sbjct: 123 TLQDRDYFLNSKDIPSIDAMINWSKEIIEFLKGYHDLNKKWLNEFAKYPSGHLGLVNKEN 182
Query: 212 AWGWGFSGVMI---------------------RGSGAAWDLRKSQPYECYSELD-FDIPI 249
+ + G + G PY D +
Sbjct: 183 GFLELYDGNLRALDANGEVILNNIPSDDYIQYFNEGVEKWSYLKFPYLKDLGKDKGWNRV 242
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM- 308
G + E I + ++ N S I A+M + +
Sbjct: 243 GPLARLNVCNGIETPFAEEERIIFK--LSTNGKVNNKTMYSHWARLIEMLYCAEMMKKLL 300
Query: 309 -ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
+ I L +G E +EAP+G + D ++ RC + + +
Sbjct: 301 NDEDILSNDLVRKGERR--SEGIGIIEAPRGTLIHHYEVDNRDRITRCNLIVSTTHNNEP 358
Query: 368 MEFLCK--------GH------QLADVSAILGSLDIVFGEV 394
M K G L V + + D
Sbjct: 359 MNQAVKWVANNVISGEPKITEGMLNQVEVAIRAYDPCLSCA 399
>gi|332295899|ref|YP_004437822.1| hypothetical protein Thena_1064 [Thermodesulfobium narugense DSM
14796]
gi|332179002|gb|AEE14691.1| hypothetical protein Thena_1064 [Thermodesulfobium narugense DSM
14796]
Length = 411
Score = 140 bits (354), Expect = 3e-31, Method: Composition-based stats.
Identities = 72/360 (20%), Positives = 132/360 (36%), Gaps = 35/360 (9%)
Query: 28 LELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKL 87
L+ GE + V+ R E L+ ++F +A+P + + + A+ A+E+
Sbjct: 78 LKTYGERMLAVNIDQTYKSRKIENLMVGRSFDEAIPLAESVCSNFAFSHSVAFTQAIEEA 137
Query: 88 LGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERAS 147
LGIE+ +L+RV++ EI RI +H+ + ++ E+ + +
Sbjct: 138 LGIELSDYSKLLRVIFLEIERIYNHIYVIAKLSISAAQKVYSSHLLYLFERCISLNSKYF 197
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTV 207
S R G V +D P EL + + I + +R + R N G +
Sbjct: 198 NSTFLKKIKRVGEV-KDFPKELFLNYLEELKKVVNEFKKIYNFSLDSRNYLDRLHNTGIL 256
Query: 208 KLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMR 267
+ED + GF G ++ + D+R+ + +F + + GD R +VR E+
Sbjct: 257 TIEDFYNIGFDGPALKAMNYSLDIREFSK----TTKNFKPILEEEGDSLARMIVRAKEVS 312
Query: 268 ESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVG 327
+S++II + + L P +SL K +
Sbjct: 313 QSLEIIEESIELLQETQPESP--------------------KSLKTSQKRDS-------- 344
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSL 387
E+ G Y+ K I P +A++ G D I+ S
Sbjct: 345 -GIGQSESASGTITYYVEIK-DQKIDYVYISTPSTFLFRAIQKALVGQIFTDFPFIVDSF 402
>gi|296087072|emb|CBI33446.3| unnamed protein product [Vitis vinifera]
Length = 285
Score = 140 bits (354), Expect = 3e-31, Method: Composition-based stats.
Identities = 104/195 (53%), Positives = 136/195 (69%), Gaps = 1/195 (0%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
YV+ M QEHA++ AVE+LL E+P+R Q IRVL+ EI RI +H L +TT AMDVGA TP
Sbjct: 50 YVSTMAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRISNHSLALTTHAMDVGASTPS 109
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
LW EEREKL+ FYER S +RMHA++ RPGGV QD+P L DI F S ++ + +
Sbjct: 110 LWASEEREKLLEFYERVSRARMHASFIRPGGVAQDLPLGLCRDIDSSTQQFASRIDGLEE 169
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ TGNRI+KQR V+IGTV + A WGFSGVM+RG WD R++ PY+ + + D D+P+
Sbjct: 170 MSTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGR-VCWDSRRAAPYDVHDQSDPDVPV 228
Query: 250 GKHGDCYDRYLVRMM 264
G D YDRY +R+
Sbjct: 229 GTRVDRYDRYCIRIE 243
>gi|118566846|gb|ABL01742.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
Length = 155
Score = 140 bits (354), Expect = 3e-31, Method: Composition-based stats.
Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 1/155 (0%)
Query: 43 GLLHRGTEKLIETKT-FLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRV 101
+HRG EKL ET+ + + DR+ + AY +VE +GI++P R Q+IR
Sbjct: 1 FYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRA 60
Query: 102 LYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGV 161
+ E+ R+ SHLLN+ G + + F RE M E +G+R GG+
Sbjct: 61 ILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGI 120
Query: 162 HQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRI 196
+D+ E + + ++ D+L
Sbjct: 121 RRDLLKEDMIQTRQLAQQMRRDVQELVDMLLSTPN 155
>gi|312284576|gb|ADQ64095.1| bidirectional NAD(P) linked NiFe hydrogenase [uncultured Cyanothece
sp.]
Length = 397
Score = 140 bits (354), Expect = 3e-31, Method: Composition-based stats.
Identities = 58/392 (14%), Positives = 97/392 (24%), Gaps = 72/392 (18%)
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG--- 124
+ + P++ A +K+L +EIPI + +R L + SH L+ +
Sbjct: 1 ICGICPVSHLLCAAKTGDKILAVEIPIAAEKLRRLMNLGQITQSHALSFFHLSSPDFLLG 60
Query: 125 ----------------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE 168
G R+ E ++H A+ PGGV +P E
Sbjct: 61 WDSDPGQRNVFGLIASDPELARQGIRLRQFGQKIIELLGAKKIHPAWSVPGGVRSPLPEE 120
Query: 169 LVEDIGCWCDSFPSALNDISDLLTGN-RIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA 227
I ++ L F N G G G+ G
Sbjct: 121 GRAWIRERLPESYQTIHTALALFKQLLERFSTEVANFGEFPSLFMGLVGKDGLWEHYGGH 180
Query: 228 -----------------------------AWDLRKSQPYECYSELDFDIPIGKHGDCYDR 258
W K Y+ + +G
Sbjct: 181 IRFTDSQGNIVADNLREEDYQDYIGESVEKWSYLKFPYYKPLGYPEGIYRVGPLARLNVC 240
Query: 259 YLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLY 318
++ R V G ++V A +E+LI +
Sbjct: 241 SRFGTPGADGELREYRDRV----GGVATSSFYYHYARLVEILGA--LEGIEALIEDVDIV 294
Query: 319 TEGYHVPVG----EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFL--- 371
+ G E EAP+G + D + + + AM
Sbjct: 295 SHRTRAQGGINALEGVGVSEAPRGTLFHHYHVDEDGLIEKVNLIIATGNNNLAMNKTVAQ 354
Query: 372 -----CKGHQLAD-----VSAILGSLDIVFGE 393
GH + + V A + D
Sbjct: 355 IAKHYIHGHDIPEGMLNRVEAGIRCYDPCLSC 386
>gi|4115711|dbj|BAA73742.1| orfI [Wolbachia sp. wTai]
Length = 88
Score = 140 bits (354), Expect = 3e-31, Method: Composition-based stats.
Identities = 63/82 (76%), Positives = 76/82 (92%)
Query: 315 FKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKG 374
FKLY+EGYHVP GE Y AVEAPKGEFGVY++SDG N+PYRC+IRAPG+AHLQA++F+ KG
Sbjct: 7 FKLYSEGYHVPEGEAYVAVEAPKGEFGVYIVSDGTNRPYRCRIRAPGFAHLQALDFMSKG 66
Query: 375 HQLADVSAILGSLDIVFGEVDR 396
H LAD++AI+GSLDIVFGE+DR
Sbjct: 67 HMLADIAAIIGSLDIVFGEIDR 88
>gi|321453267|gb|EFX64519.1| hypothetical protein DAPPUDRAFT_66167 [Daphnia pulex]
Length = 100
Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats.
Identities = 63/97 (64%), Positives = 83/97 (85%)
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
KR++MK SME+LIHH KL+T+GY+VP G Y AV+ PKGEFGVYL+SDG ++PYRCKI+A
Sbjct: 4 KRSEMKTSMEALIHHLKLFTQGYNVPPGATYTAVDNPKGEFGVYLVSDGTSRPYRCKIKA 63
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
PG+AHL A+E + + H LAD+ AI+G+LD+VFGE+DR
Sbjct: 64 PGFAHLAALEKVGRNHMLADIVAIIGTLDVVFGEIDR 100
>gi|39997514|ref|NP_953465.1| nickel-dependent hydrogenase large subunit [Geobacter
sulfurreducens PCA]
gi|39984405|gb|AAR35792.1| nickel-dependent hydrogenase, large subunit [Geobacter
sulfurreducens PCA]
Length = 473
Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats.
Identities = 58/444 (13%), Positives = 104/444 (23%), Gaps = 78/444 (17%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLH---RGTEKLIETKTFLQAVPYFDRLDYVAPMNQ 76
G R+ ++LD GL+ RG EK++ + R+ V P
Sbjct: 13 IEGHARVFIDLDD---TGALTAAGLVVNELRGFEKILTGMDADRMPLVTARICGVCPTAH 69
Query: 77 EHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV------------- 123
A A+ G+E P +L+R L I SH L++
Sbjct: 70 HLAATNALNNAAGVEPPPAAKLLRELMYMGHVIHSHCLSLFVLQGPDLVLGLDADPAVRN 129
Query: 124 ------GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWC 177
A + R E G H GG+ + + + W
Sbjct: 130 VVGVVQAAPDIAKKALQCRSIGQKINELVGGRGTHPVTSVAGGIAFVLDADRERQLNAWI 189
Query: 178 DSFPSALND--------ISDLLTGNRIFKQRN------------VNIGTVKLEDAWGWGF 217
+ + + + +L + Q+ + +
Sbjct: 190 NEARDLVLELAPVVKQLLMKMLDTHPAMLQQWVAPAWSVGTVKADGTLALVNGEIRAVDE 249
Query: 218 SGVM-------IRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESV 270
G + S + + + S +D D R V
Sbjct: 250 VGALKARFPSADYDSYMSESAVEFSYMKQVSFVDGDNRHDYRVGPLARLNVSERYGTPLA 309
Query: 271 KIIRQCVNRLLGKNKVGPVSASDPKIVPPKR--ADMKRSMESLIHHFKLYTEGYHVPVGE 328
R+ R +G+ +++ M H + G
Sbjct: 310 DREREEFIRTVGRPCHANALQPWARLIELLYCTERAGEIMADPAIHGETRVP-VTFSGGR 368
Query: 329 VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLA---------- 378
VEAP+G D + + + +A
Sbjct: 369 GVGHVEAPRGTLIHDYEIDENGIVRAANLIVATQQN-----YALINAMIAQAATSHVINR 423
Query: 379 -D-------VSAILGSLDIVFGEV 394
D V + D
Sbjct: 424 PDDQALLNAVEFGIRCYDPCLSCA 447
>gi|298529023|ref|ZP_07016426.1| nickel-dependent hydrogenase large subunit [Desulfonatronospira
thiodismutans ASO3-1]
gi|298510459|gb|EFI34362.1| nickel-dependent hydrogenase large subunit [Desulfonatronospira
thiodismutans ASO3-1]
Length = 488
Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats.
Identities = 57/449 (12%), Positives = 111/449 (24%), Gaps = 75/449 (16%)
Query: 20 AHGVLRLILELD-GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD V+ + RG EK ++ + + V
Sbjct: 12 LEGHGKIAIFLDENGNVDDAFFQT-VEFRGYEKFLQGMPIEEVPRTVSTVCGVCRAVHFL 70
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP--------- 129
A + + G+ P G+ +R L+ + H + + P
Sbjct: 71 CSMKASDDVYGVAPPSTGRKLRELFYSAHTVEDHTAVLYALGFPDFVVGPDASPAERNLV 130
Query: 130 -----------LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
++R + +E G H PGG + I E I W +
Sbjct: 131 GLIKAVGAETGKLVLQKRGLAVKIFELLGGKPNHPVAALPGGWSKRINEEERAQIEKWAE 190
Query: 179 SFPS----ALNDISDLLTGNRIF------KQRNVNIGTVKLEDAWGWGF----------- 217
L D++ N + + V +G + D
Sbjct: 191 ELVELGKLTLQVFDDVVLKNPKYMELVTGEMYRVEVGNMATVDEQNRFALYDGTQKAIDA 250
Query: 218 ----SGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHG---------DCYDRYLVRMM 264
G + + P+ G G C +
Sbjct: 251 QGNVVGTFRGKEYLDFISERVLPWSYLKFPYNKKLGGWDGIKSGPDTNIYCVGPLARMNV 310
Query: 265 EMRESVKIIRQCVNRLLGKNKVGPVSA---SDPKIVPPKRADMKRSMESLIHHFKLYTEG 321
S + ++ + PV A ++ +E ++
Sbjct: 311 VDSMSTPLAQEHFEKFHDTFGAWPVHYIQAYHWARAIEVLAAAEKCLELSRDPEITGSDI 370
Query: 322 YHVPV---GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK---GH 375
++ P GE +EA +G + I+D + + + K H
Sbjct: 371 WNQPSSCTGEGVGILEANRGTLVHHYITDDQGIVQNANLIVSTTHNNAPINLAVKTAARH 430
Query: 376 QLAD----------VSAILGSLDIVFGEV 394
+ D V D+
Sbjct: 431 FIQDGNVSEALLNHVEMAFRPYDLCLACA 459
>gi|124360816|gb|ABN08788.1| NADH-ubiquinone oxidoreductase, chain 49kDa; Respiratory-chain NADH
dehydrogenase, subunit 1 [Medicago truncatula]
Length = 288
Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats.
Identities = 44/106 (41%), Positives = 62/106 (58%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRI 109
Y R DY+A M E E+L I++P R +L ++ + I
Sbjct: 66 YVTRWDYLATMFTEAITVNGPEQLGNIQVPKRMKLADIITILVQDI 111
>gi|257077040|ref|ZP_05571401.1| Ni,Fe-hydrogenase III large subunit [Ferroplasma acidarmanus fer1]
Length = 384
Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats.
Identities = 82/396 (20%), Positives = 135/396 (34%), Gaps = 53/396 (13%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
K N+GP + L GE + V H R K++ +
Sbjct: 37 FADKNPGEIYFNYGPSAGGLRESVNFSLLTPGETIRDVIIHPEYKKRDL-KIL-GDPVSR 94
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+ +R++ + Y LAVE+ LGIE +R++ E+ RI S++ +
Sbjct: 95 ALLKVERINGFHAASNSIGYILAVEEALGIENSE-LNDMRIVELELERIRSNIDVIKGMC 153
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
G P RE++ RA G R + G V D ++
Sbjct: 154 ESAGFAVPEKQLLYLREEVARIISRAFGHRYFFSVNGFGTVSGDFS-------TIKLNAI 206
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
DI D L ++IF R G VK E++ +G R +G +D RK Y
Sbjct: 207 EKQFRDIYDGLLSSKIFLDRIQENGIVKNENS-----TGPAARAAGFKFDARKDSKSLDY 261
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
F D + R +VR E+ E++ I D V
Sbjct: 262 RN--FTPVTESGADSFSRLVVRSEEVFEAINI-------------------IDSYGVKNI 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ K + G+ A +E+P G+ Y+ K ++ +P
Sbjct: 301 KTRTKNELTG---------------SGKGSARIESPAGDIFYYVNI-ENGKLNDIQMVSP 344
Query: 361 GYAHLQAMEFLCKGHQL-ADVSAILGSLDIVFGEVD 395
Y +L+ K + + D + S I E++
Sbjct: 345 SYLNLRLFREALKNNNIFTDFFFVWESFGIWISELE 380
>gi|146304194|ref|YP_001191510.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Metallosphaera sedula
DSM 5348]
gi|145702444|gb|ABP95586.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Metallosphaera sedula
DSM 5348]
Length = 368
Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats.
Identities = 78/383 (20%), Positives = 133/383 (34%), Gaps = 59/383 (15%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
+GP + + GE +E+++ H+ R + T A+ +R++
Sbjct: 41 YGPSAGGLLESVGFEITTYGESIEKIN-HLPYKGRQI--TLSGLTIGDALLRVERINGAF 97
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWG 132
+ ++ A+E L IE+P + R+ E+ RI ++LL + L P
Sbjct: 98 TASHSISFLQAIESALEIEVPHDVVISRMAQLELERIRNNLLVIQRVLESASFLVPSFLL 157
Query: 133 FEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLT 192
++ E++ R+ G R PGGV PS +
Sbjct: 158 LQQIEEVNRAIARSCGHRYFFGANYPGGVR-------------CELKLPSLKISDIERTL 204
Query: 193 GNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKH 252
NRIF R G VK + G + R SG +D R + Y D IP
Sbjct: 205 ENRIFIDRLQGNGVVKDSFSI-----GPVARASGFKYDARLDSDFLAYRNFDLRIPTQDQ 259
Query: 253 GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLI 312
GD + R LVR+ E++ES++++++
Sbjct: 260 GDAFSRILVRLEEIKESLRLLQEL------------------------------------ 283
Query: 313 HHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLC 372
K + + GE VE+P G+ YL R + AP +++
Sbjct: 284 -KVKPCSFTMKIRDGEGIGRVESPSGDLA-YLTRVRSGHVERAYLLAPSKVNMRLFLKSM 341
Query: 373 KGHQLADVSAILGSLDIVFGEVD 395
G+ D S I E++
Sbjct: 342 PGNIFTDFPFNWESFGIWISELE 364
>gi|327400057|ref|YP_004340896.1| hydrogen:quinone oxidoreductase [Archaeoglobus veneficus SNP6]
gi|327315565|gb|AEA46181.1| Hydrogen:quinone oxidoreductase [Archaeoglobus veneficus SNP6]
Length = 575
Score = 139 bits (351), Expect = 6e-31, Method: Composition-based stats.
Identities = 59/461 (12%), Positives = 105/461 (22%), Gaps = 117/461 (25%)
Query: 34 IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIP 93
V + L RG E ++ + A R+ V P A++ G+ P
Sbjct: 33 TVVKEAYSHTNLFRGFEIILRGRDPRDAFFITQRICGVCPAPHGETAIQALDHAYGVTPP 92
Query: 94 IRGQLIRVLYSEIGRILSHLLNVTTQ-----------------------AMDVGALTPPL 130
LIR + + H+++ +G + +
Sbjct: 93 PAAILIRNILHGAYYVYDHMIHTYLLIGPELGVICKYPPMVPPALGKPGIAKLGLGSSYV 152
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS-----ALN 185
E + K G H PGGV + + +
Sbjct: 153 KCIEMQRKANEIVALWGGKFPHHTSEYPGGVTVKPTLDRIATTLTNMTELWDFAVNTMVP 212
Query: 186 DISDLLTGNRIF---------------KQRNVNIGTV----------KLEDAWGWGFSGV 220
D+ L+ N + G +
Sbjct: 213 DLMALVERNEHVGEAVSALLDIDFRGLQDLGPTYGNFLSYGLFPDVNDYDKWVEAQDGKP 272
Query: 221 MIR-----------GSGAAWDLRKSQPYECYSELDFDIPIGKH-------------GDCY 256
R G +DL K Y YS D I +
Sbjct: 273 TYRDNALIKAGAWDGDFKKFDLSKIAEYVKYSRYDDSISGRHPREGDVIVRKDKPGAYAW 332
Query: 257 DRYLVRMMEMRESVKIIRQC---------------------VNRLLGKNKVGPVSASDPK 295
+ ++ E + R + K + +
Sbjct: 333 MKAPRYEGKVYEVGPLARMINTFGLHWKIDVTNPVTGETFTFKWDVLNPKGSVIDRVAAR 392
Query: 296 I---------VPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLIS 346
+ V ++K+ M I ++ Y E + EAP+G Y
Sbjct: 393 VAQTVWFATKVMEWAIELKQYMSGDIVDRRIPDYKYVPDNAEGFGLWEAPRGALLHYTNI 452
Query: 347 DGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLA 378
K + + P +L +E +G L
Sbjct: 453 K-NKKIHNYQCIVPSTWNLGPRDDMGQPGPVEKALEGTWLP 492
>gi|117924192|ref|YP_864809.1| nickel-dependent hydrogenase, large subunit [Magnetococcus sp.
MC-1]
gi|117607948|gb|ABK43403.1| nickel-dependent hydrogenase, large subunit [Magnetococcus sp.
MC-1]
Length = 432
Score = 139 bits (350), Expect = 9e-31, Method: Composition-based stats.
Identities = 61/411 (14%), Positives = 113/411 (27%), Gaps = 38/411 (9%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G + + ++ E ++ I R E L++ K A R+ + A
Sbjct: 12 VEGHGGITVAVNEEGIQSCQMSIFEGARFYELLLKGKLARDAPGIVCRVCSICSAGHTLA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG------------ALT 127
+A+E LGI + Q R L + I SH L++ A
Sbjct: 72 SVMALESALGIHVSDTVQGFRTLLNLGQFIESHALHLFALAAPDYLGNASILQMASHFPE 131
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
G E + + E G +H GG+ + + ++ + + +
Sbjct: 132 QVQKGLEIKRVGNLVQEVVGGRAIHPVNVIVGGLGRRPARQAMQTLLQDLQNALDLALSL 191
Query: 188 SDLL--TGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQP----YECYS 241
+ N + I +G +G + SG +
Sbjct: 192 RGFVASLQNPEMGLQP-PILVALRASGARYGLTGTHLAASGHEDIPVAHFYQRVNEKVVR 250
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP--P 299
L RM+ E + + L + + + + V
Sbjct: 251 HSTAKQSTYAKKPFMVGALARMVHNGERLTGEAAQLREALLPAQPTTLHNNAAQFVELVW 310
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVP-VGE--VYAAVEAPKGEFGVYLISDGGNKPYRCK 356
+ E+L L + GE AA+E P+G +G +
Sbjct: 311 ALEEAVALCEALQEGPALIPPMTTMGFEGEQMGLAALEVPRGTLYHLYGVNGEGVLTQAD 370
Query: 357 IRAPGYAHLQAMEFLC---KGHQLA-----------DVSAILGSLDIVFGE 393
I P +L +E G+ L + I + D
Sbjct: 371 IITPTAQNLAHVERDFAHGVGYWLEQPQRQQEQLRLYLEMIARAYDPCISC 421
>gi|154150022|ref|YP_001403640.1| coenzyme F420 hydrogenase [Candidatus Methanoregula boonei 6A8]
gi|153998574|gb|ABS54997.1| Coenzyme F420 hydrogenase [Methanoregula boonei 6A8]
Length = 437
Score = 139 bits (350), Expect = 9e-31, Method: Composition-based stats.
Identities = 62/399 (15%), Positives = 109/399 (27%), Gaps = 54/399 (13%)
Query: 47 RGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEI 106
RG EKL KT Q R+ + P+ A A+E + EIP + +R +
Sbjct: 23 RGVEKLAVGKTPEQVPKIASRVCGICPIAHNLAATEAMEASIKCEIPKDAKALRNILQLA 82
Query: 107 GRILSHLLN----------------VTTQAMDVGALTPPLWGFEEREKLMVFYERASGSR 150
R+ S L+ + + T RE + A G
Sbjct: 83 NRLHSIALHDILILPDLYIPGTETKINPFTAEEPVRTVAKRIQRLREIGQTIGQIAGGDC 142
Query: 151 MHAAYFRPGGVHQDIPPELVEDIGCWCDS---FPSALNDISDLLTGNRIFKQRNV----- 202
+H R GG++++ + + A D + N ++
Sbjct: 143 IHPRNTRIGGMYRNCSEQAKTKMYDLAKEGLVLAKAQMDFMIAVLRNYQARESVDVGGMK 202
Query: 203 -----NIGTVKLEDAWGWGFSGVMIRGSGAAWDL------RKSQPYECYSE---LDFDIP 248
+G F G WD+ R Y E + P
Sbjct: 203 VPLPKTLGYHNQGYMATHAFYGSSSLDECPTWDINRFKEVRPWDWYMGEMEVSLEEPRYP 262
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGK--------NKVGPVSASDPKIVPP- 299
+G + +M Q V ++ G V + + +
Sbjct: 263 VGGTTKIGTKVNPQMEACTGIPMYDGQPVEVGPRARLATYKNYDEKGTVGQNIAREMEYT 322
Query: 300 -KRADMKRSMESLIHHFKLYTEGYHVPVGE---VYAAVEAPKGEFGVYLISDGGNKPYRC 355
+M +++L K+ + +P G+ +A EAP+G K
Sbjct: 323 DSLYEMIDQIDALDTCGKVVADF--IPDGDGSLGWATNEAPRGCDAHIARVK-DWKVQYF 379
Query: 356 KIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEV 394
+ P + G I+ D
Sbjct: 380 SMLVPTTWNFATCSAALTGAPWQLAEVIMRGYDPCVSCA 418
>gi|48477898|ref|YP_023604.1| formate hydrogenlyase subunit 5 [Picrophilus torridus DSM 9790]
gi|48430546|gb|AAT43411.1| formate hydrogenlyase subunit 5 [Picrophilus torridus DSM 9790]
Length = 381
Score = 138 bits (349), Expect = 1e-30, Method: Composition-based stats.
Identities = 68/393 (17%), Positives = 128/393 (32%), Gaps = 53/393 (13%)
Query: 2 DKKKSR-SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
++K++ SF ++GP R + GE + + + R ++
Sbjct: 36 NEKRTDFSFNFSYGPLTGGIPEPFRFDINTSGEKINYIKYYN-YKIRNI--KLKGINIKD 92
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+PY +R++ + + +V L IEIP ++ ++ E+ RI +HL +
Sbjct: 93 AIPYIERINGNFAASYTICFLSSVMDALEIEIPYELKMYYIIEMELERIRNHLYVLARMC 152
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
G P +E+ + G R DI + +
Sbjct: 153 EPAGFNVPANMLMHIKERFSRIIDITFGHRYFFGVN--------QLKSKRLDIHKMINVY 204
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ +NDI L +R+F R + G + +D +G R +G +D R Y
Sbjct: 205 KNEINDIYLNLLNSRLFTDRLQDNGRILDDDM-----TGPAARAAGYKYDSRYDFDIFYY 259
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
++ ++I GD R+ VR E+ S+ II N+
Sbjct: 260 NDTGYEIKTDDSGDAMSRFNVRFNEILNSIDIIENAENKTGDSC---------------- 303
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
++ G VE+P G+ Y+ KI
Sbjct: 304 ----YNILDG---------------SGTGLTRVESPSGDVAFYVEL-SNGVIKDLKIHTA 343
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGE 393
++++ G D S + +
Sbjct: 344 LERNMKSFLKSSTGTIFTDFHFNFESFGLWAAD 376
>gi|315637454|ref|ZP_07892665.1| Ni/Fe-dependent hydrogenase, large subunit [Arcobacter butzleri
JV22]
gi|315478244|gb|EFU68966.1| Ni/Fe-dependent hydrogenase, large subunit [Arcobacter butzleri
JV22]
Length = 449
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 62/440 (14%), Positives = 118/440 (26%), Gaps = 67/440 (15%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +L I+ L RG E ++E K+ L A+ Y R+ + +A
Sbjct: 10 IEGEAKLNCSWKNGIIIDSRID-FLNFRGFEYILEDKSPLDALVYTPRICGICGQAHLNA 68
Query: 80 YALAVEKLL-----GIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV-----GALTPP 129
+EK +EI + +L+R + I I SH+ +
Sbjct: 69 AVEVLEKAYENIDEKLEITPKAKLLRQIGLNIEMIDSHIKWFYMFILPDIIKLNSNDLNI 128
Query: 130 LWGFEEREKLMVF---------YERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+ ++ L +G H++Y PGGV D + ++ +
Sbjct: 129 YEPLKGKKWLEACKVASETIKALAIIAGQWPHSSYMIPGGVMSDPTKMDLINMQNYLQIA 188
Query: 181 PSALNDIS-----DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQ 235
+ D D F G ++L + + S +
Sbjct: 189 INFFEDSIVDTSLDNYLSFTSFDNFEKIGGDLELFKDLAFKYELQNYGKSYNRFISLSET 248
Query: 236 PYECYSELDFDIPIG--------------------KHGDCYDRYLVRMMEMRESVKIIRQ 275
+ + + + E+ + R
Sbjct: 249 NLFKKGRFSSKVINKIDLSKILENSDSTFTLSGDNTQKHTWSKNVTYDDAFFETGPLARA 308
Query: 276 CV-NRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGY-----------H 323
+ NR K+ S V + ++ +E +
Sbjct: 309 IISNRKFVKDIHKNFDDSAFTRVLARLDELAFLLEDTKNLISKVNTKEVSFIKPKISLNK 368
Query: 324 VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA--------MEFLCKGH 375
+ E +AVEA +G + K + P +L + G
Sbjct: 369 IDKVEAESAVEATRGSLYHKIDI-EKGKIKLYDVITPTVWNLGPSNKKEQGIAQKAIIGT 427
Query: 376 QLADVS-AILGSLDIVFGEV 394
D++ IL S D+
Sbjct: 428 SSIDIAKIILRSFDVCSVCT 447
>gi|209545175|ref|YP_002277404.1| Ni Fe-hydrogenase III large subunit-like protein [Gluconacetobacter
diazotrophicus PAl 5]
gi|209532852|gb|ACI52789.1| Ni Fe-hydrogenase III large subunit-like protein [Gluconacetobacter
diazotrophicus PAl 5]
Length = 510
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 85/393 (21%), Positives = 125/393 (31%), Gaps = 44/393 (11%)
Query: 10 TINFGPQHPAAHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
+ GP H L L L G + V + +G HRG + AV R
Sbjct: 154 ILGIGPADGGHHTPGHLRLALGGRDTVGGAEWRLGYAHRGVMARLCGLDAPAAVRLAGRA 213
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
A + + A A+E + + RVL +EI R+ +HL +V A GA
Sbjct: 214 AAGASVAHQSALCRAIEAASDSMVGTGTERCRVLLAEIERVATHLHDVARTARAAGATAL 273
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQD---IPPELVEDIGCWCDSFPSALN 185
RE +M R G R+ RP G E I +
Sbjct: 274 AAECEYLRESVMDLCGRMFGHRLLMDLVRPEGPDGHAGAGDAEDGAAIAAVARQVADLVR 333
Query: 186 DISDLLTGNRIF---KQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
++ R + + R V G + A G GV R S DLR+ P Y
Sbjct: 334 GRMRVVGRCRDWPGLEARVVGRGVLGEHTARMLGVGGVAGRASAREEDLRRLVP--GYRL 391
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
D + + GD R +R+ E+ SV+I+ P
Sbjct: 392 GWLDTGVRRAGDVAARIDLRLAEIGGSVRILESAGADGPLPGTGTPPR------------ 439
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
GE E P+G ++ G +R P
Sbjct: 440 ----------------------RDGEGVGCAEGPRGAVWYWVRM-EGGAVRAAHVRDPAL 476
Query: 363 AHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
AH+ A+E + G DV+ I+ S + D
Sbjct: 477 AHVAALEHVLAGADADDVAMIVRSFGLSAAAAD 509
>gi|154151562|ref|YP_001405180.1| nickel-dependent hydrogenase, large subunit [Candidatus
Methanoregula boonei 6A8]
gi|154000114|gb|ABS56537.1| nickel-dependent hydrogenase, large subunit [Methanoregula boonei
6A8]
Length = 438
Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 63/419 (15%), Positives = 120/419 (28%), Gaps = 51/419 (12%)
Query: 26 LILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAV 84
L+L++D IV R D RG E+ K Q R + P+ A A+
Sbjct: 19 LVLDVDEKGIVTRGDWVGLSPVRGIERFCTGKKMHQVPKIASRTCGICPVPHVLAGVGAM 78
Query: 85 EKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL----------------TP 128
E +G E+P L+R + R+ H L+ D+
Sbjct: 79 EASIGCEVPKDALLLRRIIHSASRLSVHALHAFMVLPDLYYPGTDTRINPYSPEPRARAI 138
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
RE + A G +H R GG++++I P+ + ++
Sbjct: 139 ADRIQRIREIGQDCVQIAGGEAIHPGNPRVGGMYRNISPQAKTKLFDLAKEGNVLAHEHL 198
Query: 189 DLLTGNRIFKQRNVNI-------------GTVKLEDAWGWGFSGVMIRGSGAAWDLRKS- 234
D + R + G G ++DL +
Sbjct: 199 DCMLALIRDFSRREWVEIGGARVPVPKNLGYHNQGYLATDPLYGTSSLEEHPSFDLARYA 258
Query: 235 -----QPYECYSELDFDIPIGKHGDC--------YDRYLVRMMEMRESVKIIRQC---VN 278
Y E+ + P G R + + + + + +
Sbjct: 259 EVSPEHWYRGPGEVTYGDPTYPGGGTLPEGTAFDPAREMCPAVPIYDGQPVEVGAAARLR 318
Query: 279 RLLGKNKVGPVSASDPKIVP--PKRADMKRSMESLIHHFKLYTEGYHVPVGE-VYAAVEA 335
R ++ G + + + P +++ ++ L + G+ +AA EA
Sbjct: 319 RFSNFDEKGTIGQLVARQMECIPAVTELEDCIDRLNPAGAVRAGTLPPGDGKPGWAANEA 378
Query: 336 PKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEV 394
P+G + K K+ P ++ G ++ D
Sbjct: 379 PRGTLVH-ITRVKDRKVRFFKMIVPTSWNMPTAGLALAGSPWQLAEFVIRGYDPCISCA 436
>gi|218673427|ref|ZP_03523096.1| NADH dehydrogenase subunit D [Rhizobium etli GR56]
Length = 123
Score = 137 bits (346), Expect = 3e-30, Method: Composition-based stats.
Identities = 119/122 (97%), Positives = 121/122 (99%)
Query: 36 ERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIR 95
ERVDPHIGLLHRGTEKLIETKT+LQAVPYFDRLDYVAPMNQEHAYALAVE+LLGIEIPIR
Sbjct: 2 ERVDPHIGLLHRGTEKLIETKTYLQAVPYFDRLDYVAPMNQEHAYALAVERLLGIEIPIR 61
Query: 96 GQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAY 155
GQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAY
Sbjct: 62 GQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAY 121
Query: 156 FR 157
R
Sbjct: 122 VR 123
>gi|297520324|ref|ZP_06938710.1| Formate hydrogenlyase, subunit E [Escherichia coli OP50]
Length = 232
Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats.
Identities = 60/263 (22%), Positives = 102/263 (38%), Gaps = 31/263 (11%)
Query: 97 QLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYF 156
Q+IR + E+ R+ SHLLN+ G + + F RE M E +G+R
Sbjct: 1 QMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLN 60
Query: 157 RPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWG 216
GG+ +D+ + + + ++ D+L +QR V IG + E A +
Sbjct: 61 LIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFS 120
Query: 217 FSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQC 276
G M+R SG A D R P+ Y L ++ + D R VR+ E+ ++ +
Sbjct: 121 NVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNM---- 176
Query: 277 VNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAP 336
++ L GP+ +P + A EAP
Sbjct: 177 IDYGLDNLPGGPLMVEGFTYIPHRFAL---------------------------GFAEAP 209
Query: 337 KGEFGVYLISDGGNKPYRCKIRA 359
+G+ + ++ K YR + RA
Sbjct: 210 RGDDIHWSMTGDNQKLYRWRCRA 232
>gi|163846670|ref|YP_001634714.1| NADH-ubiquinone oxidoreductase subunit 49kDa [Chloroflexus
aurantiacus J-10-fl]
gi|222524474|ref|YP_002568945.1| NADH-ubiquinone oxidoreductase subunit 49kDa [Chloroflexus sp.
Y-400-fl]
gi|163667959|gb|ABY34325.1| NADH-ubiquinone oxidoreductase chain 49kDa [Chloroflexus
aurantiacus J-10-fl]
gi|222448353|gb|ACM52619.1| NADH-ubiquinone oxidoreductase chain 49kDa [Chloroflexus sp.
Y-400-fl]
Length = 361
Score = 136 bits (344), Expect = 4e-30, Method: Composition-based stats.
Identities = 86/396 (21%), Positives = 151/396 (38%), Gaps = 59/396 (14%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIG-----LLHRGTEKLIETKTFLQAVP 63
+ + P A H RL L + GE + V+ R L++ A+
Sbjct: 3 YQLTLHPVAGAWH-SERLTLTIQGERIVDVEYRPSVGDGAYARR----LMQGG-ITGALQ 56
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
++ + A++LA+E+L G+ P+R Q +RV+ +E+ R SH+ + A +
Sbjct: 57 AARQVCPHCHVAHTLAFSLAIEQLAGVTAPLRAQAVRVMLAELERATSHINTLAALATAL 116
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
G +L + + SG+ AA RPGG+ D + + +
Sbjct: 117 GLTDAA-RLSRLTTRLGLIALKLSGNDE-AALIRPGGLLADPSESALAETAQAINDLLPR 174
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+ +++ R R V+IG ++ A +G +G + R SG A D+R +PY Y+ L
Sbjct: 175 MIAVAEQSIPRRSLLARTVDIGVLQPTAARQFGLAGPLARASGVATDVRIQEPYAAYNIL 234
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+ + GD + R +V ++E ES++++ + + L N
Sbjct: 235 APALVTEEGGDVHSRAVVLLLEAIESLRLVVRWLQNLPIGN------------------- 275
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKI-RAPGY 362
E + GE VEAP+G + SDG + +I AP
Sbjct: 276 --------------VYEEVPLVAGEATVTVEAPRGSLRYTVRSDG-QRLTGVEIGIAP-- 318
Query: 363 AHLQAMEFLCKGHQ-----LADVSAILGSLDIVFGE 393
++ L + DV I S D
Sbjct: 319 ----QLDRLLARSLLQQAAVDDVMLIAISTDPCTAC 350
>gi|86160578|ref|YP_467363.1| nickel-dependent hydrogenase, large subunit [Anaeromyxobacter
dehalogenans 2CP-C]
gi|85777089|gb|ABC83926.1| Nickel-dependent hydrogenase, large subunit [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 494
Score = 136 bits (343), Expect = 6e-30, Method: Composition-based stats.
Identities = 59/450 (13%), Positives = 108/450 (24%), Gaps = 77/450 (17%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD VE + L RG E+ + + + V P
Sbjct: 13 LEGHGKIEILLDDRGDVESAFLQVPEL-RGFERFCVGRPAEEMPQLTAHVCGVCPAAHHI 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA------------- 125
A A++ L G+ P +L R LY ++ HLL+
Sbjct: 72 AAVQALDALYGVAPPAAARLARALYYQLFIFEDHLLHYWYMGGPDFYAGSDAPAPMRNIL 131
Query: 126 -------LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
R + +G +H + PGG+ + + VE
Sbjct: 132 GVLAKVGADLGKRILSARREARELMAALAGRTVHPVFALPGGISKAVDAATVERARALAP 191
Query: 179 SFPSALNDIS-----DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA------ 227
D +L + V+ G + G
Sbjct: 192 GLVRFAEDTLASFRAAVLDHPEYSEALASEAYRVRCHSMGMVDGGGRLAFLDGRLRVIDP 251
Query: 228 ------AWDLRKSQPYECYSELDFDIP--IGKHGDCY-----------------DRYLVR 262
A+ R + + + R V
Sbjct: 252 AGRELAAFAPRDWLDHLAERVEPWTYAKLTYLKAKGWTGFTEGDDTGLYRVGPLARLNVA 311
Query: 263 MMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP--KRADMKRSMESLIHHFKLYTE 320
+ RQ + LG ++ ++V ++ E
Sbjct: 312 RAMATPRAEAERQRLFEALGWPAHQTLAFHWARLVEALQAAETAQQLAGDPRLGDPHVRE 371
Query: 321 GYHVPVG--EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF-------- 370
G E AVEAP+G + +D + + ++
Sbjct: 372 VPAPLPGPREGVGAVEAPRGTLFHHYAADADGILTAANLVVASQHNAAPVQVSVRKAAKG 431
Query: 371 LCKGHQLADV------SAILGSLDIVFGEV 394
L +G ++ D + D
Sbjct: 432 LIRGGKV-DAALLNRLEMAFRAYDPCNACA 460
>gi|327399462|ref|YP_004340331.1| NADH-ubiquinone oxidoreductase chain 49kDa [Hippea maritima DSM
10411]
gi|327182091|gb|AEA34272.1| NADH-ubiquinone oxidoreductase chain 49kDa [Hippea maritima DSM
10411]
Length = 403
Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats.
Identities = 69/389 (17%), Positives = 116/389 (29%), Gaps = 42/389 (10%)
Query: 10 TINF--GPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
NF GP L GE + V+ R E + KT +A+ +
Sbjct: 55 VFNFRYGPVSSGVGEAGIFNLYTYGERILSVEVDPIYKKRNIEAQMVGKTPFEALKLAES 114
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
+ + A+ A+E GIE+ Q +R++ E+ R +H+ + A
Sbjct: 115 VCGNFSFSHSLAFTTALENQTGIELNKTVQRLRIIGLELERTYNHIHQIARLAKGASQTV 174
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
E+L+ + G+R G I +E + ++
Sbjct: 175 LTSHLEWIFEELLRTNKLLFGNRFLKHTNFLGSTT--INLHNLEKVKNRITQLKEKFEEL 232
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ + F R +G ++ + A G +G +R G DLR+ + I
Sbjct: 233 YEHALQSYNFIDRLYGVGRLERKKALNIGLTGPSLRACGINEDLRQLNR----LYENLKI 288
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
GD R VR E S +
Sbjct: 289 ATRSEGDALARMEVRAEEFINS-------------------------------CEIILSQ 317
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
+E + + + E + G+ +P G YL I P +A
Sbjct: 318 IEKIDNEPQK--EEIPINDGDYLGYSCSPTGIIAYYLEIR-KGLIDYVYISTPSVFGFRA 374
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
G+ D S I S I F + R
Sbjct: 375 FAEAITGYIFTDFSFIFDSFGINFADCAR 403
>gi|321451109|gb|EFX62871.1| hypothetical protein DAPPUDRAFT_67608 [Daphnia pulex]
Length = 100
Score = 135 bits (341), Expect = 8e-30, Method: Composition-based stats.
Identities = 62/97 (63%), Positives = 82/97 (84%)
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
KR++MK SME+LIHH KL+T+GY+VP G Y AV+ PKGEFGVYL+SDG ++PYRCKI+A
Sbjct: 4 KRSEMKTSMEALIHHLKLFTQGYNVPPGATYTAVDNPKGEFGVYLVSDGTSRPYRCKIKA 63
Query: 360 PGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
PG+AH A+E + + H LAD+ AI+G+LD+VFGE+DR
Sbjct: 64 PGFAHPAALEKVGRNHMLADIVAIIGTLDVVFGEIDR 100
>gi|327191024|gb|EGE58078.1| NADH-ubiquinone oxidoreductase protein, chain D [Rhizobium etli
CNPAF512]
Length = 114
Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 55/113 (48%), Positives = 70/113 (61%), Gaps = 1/113 (0%)
Query: 284 NKVGPVSASDPKIVPPK-RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGV 342
GP P I P + + SME+LI HF L G+ VP GEVY+ +EAPKGE G
Sbjct: 1 MPEGPFQIDMPTIAFPLDKDRVHCSMEALIQHFDLSAYGFKVPKGEVYSVIEAPKGELGF 60
Query: 343 YLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
Y+ISDG KP+R K+RAP + +LQA+ + LAD+ A+LGSLD V EVD
Sbjct: 61 YIISDGSPKPFRMKVRAPSFVNLQALFGVTNARYLADMIAVLGSLDPVMAEVD 113
>gi|289064380|gb|ADC80561.1| bidirectional NAD(P)-linked NiFe hydrogenase [uncultured
Nostocaceae cyanobacterium]
Length = 404
Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 49/395 (12%), Positives = 101/395 (25%), Gaps = 69/395 (17%)
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV---- 123
+ + P++ A + +++L ++IP +R L + + SH L+ +
Sbjct: 1 ICGICPVSHLLASSKTGDRILAVKIPETAAQLRRLMNLAQIVQSHALSFFHLSAPDLLLG 60
Query: 124 ---------------GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE 168
G R+ E G ++H ++ PGGV + E
Sbjct: 61 MDSAPEQRNIFGLIAAEPELARGGIRLRQFGQEIIELLGGKKVHPSWGVPGGVRDPLTSE 120
Query: 169 LVEDIGCWCDSFPSALNDISDLLTGN-RIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA 227
I + + + +L +K+ G G G
Sbjct: 121 NRHHIQQRIPEAKTTVINAINLFKNLLETYKKEAKTFGNFPSLFMGLVTPQGAWETYDGH 180
Query: 228 AWDLR-----------------------------KSQPYECYSELDFDIPIG-KHGDCYD 257
+ KS Y D G
Sbjct: 181 IRFVDSAGNIVADKLDAANYHEFIGESVQADSYLKSPYYLPLGYPDSSNHCRLDSGMYRV 240
Query: 258 RYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM--KRSMESLIHHF 315
L R+ + + + + G V +S + +E ++
Sbjct: 241 GPLARLNICSQIGTALADAELKEFRSHGSGTVQSSFFYHYARLIEILASIEHIEIILDDP 300
Query: 316 KLYTEGYHVPVG----EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME-- 369
+ + G E EAP+G + D + + + AM
Sbjct: 301 DILSTHLRAEAGINCLEAVGVSEAPRGTLFHHYQVDENGLILKVNLIIATGQNNLAMNRT 360
Query: 370 ------FLCKGHQLAD-----VSAILGSLDIVFGE 393
+G ++ + + A + + D
Sbjct: 361 VAQIARHFIQGDEIKEGILNRIEAGIRAFDPCLSC 395
>gi|206890060|ref|YP_002249168.1| F420-non-reducing hydrogenase subunit A, selenocysteine-containing
[Thermodesulfovibrio yellowstonii DSM 11347]
gi|206741998|gb|ACI21055.1| F420-non-reducing hydrogenase subunit A, selenocysteine-containing
[Thermodesulfovibrio yellowstonii DSM 11347]
Length = 506
Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats.
Identities = 58/448 (12%), Positives = 115/448 (25%), Gaps = 76/448 (16%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD V+ + + G EK + + + V
Sbjct: 29 LEGHGKITIFLDEQGNVDNAFMQV-VEFMGYEKFLIGMPIEEVPRTVSTICGVURGVHYT 87
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA------------- 125
A A + + G+E + IR L+ + H +
Sbjct: 88 ASVKAADAVYGVEPTPTAKKIRELFYNAHYVEDHTGILYALGFPDFVCGPTASPAERNLV 147
Query: 126 -------LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
++R + +E SG H PGG + I E ++I D
Sbjct: 148 GLVLKVGADVGKLVLKKRYSAVKIFELTSGRPSHPVAALPGGWSKRITEEERKEILACAD 207
Query: 179 SFPSALNDISDLLTGNRIFKQRNV-------------NIGTVKLEDAWGWGFS------- 218
D+ + + + IGTV D +
Sbjct: 208 DCIELAKLTLDVFDKVVLQNKEYMALVTGDVYKVVTNYIGTVDENDKVTYYDGTQKIVDT 267
Query: 219 -----GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDC------------YDRYLV 261
G + ++ P+ Y + + +G +G R+ V
Sbjct: 268 KGNELGRFKGIQYLDYIAERTLPWS-YQKAPYLKKLGWNGLVDGDGTSIYSVGPLARFNV 326
Query: 262 RMME-MRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP--PKRADMKRSMESLIHHFKLY 318
+ + + + GK ++ + + +K+
Sbjct: 327 GSGFDTPLAQEAYEKMLAAFGGKPVHHTLAYHWTRAIELMHAAETVKKIASDESITDPNV 386
Query: 319 TEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFL------- 371
+ PVGE VEA +G + +D + + M
Sbjct: 387 RQELGTPVGEGVGIVEAARGVLIHHYKTDDKGIVTDANLIVATTHNKGPMNIAVKRAAQS 446
Query: 372 -CKGHQLAD-----VSAILGSLDIVFGE 393
K ++ + V D+ F
Sbjct: 447 FIKNGKVDEGILNLVEIAYRPYDLCFAC 474
>gi|289064351|gb|ADC80551.1| bidirectional NAD(P)-linked NiFe hydrogenase [uncultured
Rhodobacteraceae bacterium]
Length = 405
Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats.
Identities = 61/401 (15%), Positives = 112/401 (27%), Gaps = 78/401 (19%)
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEI---PIRGQLIRVLYSEIGRILSHLLNVTTQAMD-- 122
+ + P++ A A A+++ +G+E Q IR L SH L+ A
Sbjct: 1 ICGICPVSHHXAAAKAIDQXVGLEPEDLSXTAQKIRKLXHXGQXFQSHALHXFYLASPXL 60
Query: 123 -----------------VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDI 165
+ G R+ + +G R+H PGGVH+ I
Sbjct: 61 LXSADVSPDKRNVVGVAMEYPELAKKGILMRKFGQEIIKMIAGKRIHGISATPGGVHKKI 120
Query: 166 PPELVED---------IGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWG 216
+ + I + + I + N + +
Sbjct: 121 SAQERDFFLNGKEIPSIDAMIEWSKEIIEFIKIYHSKNEDWFNQFATF--PSGHLGLVNK 178
Query: 217 FSGVMIRGSG---------------AAWDLRKSQPYEC-----YSELDFDIPIGKHGDCY 256
+G + G D ++ YE Y + + +G+
Sbjct: 179 KTGDLELYDGYLRAIDDSGNITLNDIPSDDYQNHFYEGVEKWSYLKFPYLRHLGREKGWN 238
Query: 257 DRYLVRMMEMRESVKIIRQCVNRLL------GKNKVGPVSASDPKIVP--PKRADMKRSM 308
+ M + E + RL GK + + +++ MK +
Sbjct: 239 RVGPLARMNVCEGISTPLAAFERLSFLNATQGKTNNATMYSHWARLIELLHCAELMKDLL 298
Query: 309 ESL-IHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
E I L G E +EAP+G + D ++ RC + + +A
Sbjct: 299 EDDDILGNDLVRRGNRRN--EGIGIIEAPRGTLIHHYQVDDKDRITRCNLIVSTTHNNEA 356
Query: 368 MEFLCK--------G------HQLADVSAILGSLDIVFGEV 394
M + G L V + + D
Sbjct: 357 MNQAVRWVANEVIDGKQNVSEAMLNQVEVAIRAYDPCLSCA 397
>gi|224373035|ref|YP_002607407.1| periplasmic [NiFeSe] hydrogenase large subunit [Nautilia
profundicola AmH]
gi|223589527|gb|ACM93263.1| periplasmic [NiFeSe] hydrogenase large subunit [Nautilia
profundicola AmH]
Length = 509
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 61/498 (12%), Positives = 126/498 (25%), Gaps = 124/498 (24%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L++ ++ +++ ++RG EK + +L A+ R P A
Sbjct: 11 IEGHLKVETVIEDSVIKEAKCSAD-MYRGIEKALRGYDYLTAIQITQRTCGCCPYAHAEA 69
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG--------------- 124
ALA+E L IE+ G+L+R + ++ ++L+ T +
Sbjct: 70 AALAIENALQIELNKNGKLLRNMVIGAYKLKDYVLHFYTLSALDFINISDILNYNGNDFD 129
Query: 125 -------------------------------------ALTPPLWGFEEREKLMVFYER-- 145
+T + E + E
Sbjct: 130 MLELKKYVLKEISSKKVFPNPLFSQKYKNAYIKNKDLNITLINHYLKSFEAMKKMSEMVK 189
Query: 146 -ASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN-DISDLLTGNRIFKQRNVN 203
H GGV E + + + +
Sbjct: 190 IFGSKSTHMVTIEAGGVTTRPTAERLVKYISLAKESQHFIEHCYIPDVLEVAKRFKEYFK 249
Query: 204 IG-------------TVKLEDAWGWGFSGVMIRGSGA-AWDLRKSQPYECYSELDFDIPI 249
IG + + GFS G +++ + Y Y E P+
Sbjct: 250 IGKGVDNFLTFDTLLNLDGSYLFTGGFSKDFEYEEGIEPYNIIEYNNYAYYKENGGYKPL 309
Query: 250 G---------------KHGDCYDRYLVRMMEMRESVKIIRQ--------------CVNRL 280
+ + + E V++
Sbjct: 310 ELTELTPLTFDEFKQNHTKYSWSKAPRYKGHVVEVGPAAIVINNYLRGKDEKLISLVDKF 369
Query: 281 LGKNKVGPVSASDPKIVPPKRADM-KRSMESLIHHFKLYTEG-------YHVPVG-EVYA 331
+ + + RA + K ++ +I + EG P +
Sbjct: 370 NRELGIDIKDYNSVMGRHLSRAIISKLIIDKIIEDSLMVEEGKLGFIQLKKPPSNVKGIG 429
Query: 332 AVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLAD--- 379
EA +G ++ ++ P ++ A+E + G ++ D
Sbjct: 430 LTEATRGALAHFIDIGENGYIRNYEMIVPTTWNISPKDNQNIPGALESMLIGTEIRDINN 489
Query: 380 ---VSAILGSLDIVFGEV 394
++ I+ S D
Sbjct: 490 PVEIARIIRSTDPCLACA 507
>gi|319955831|ref|YP_004167094.1| nickel-dependent hydrogenase large subunit [Nitratifractor
salsuginis DSM 16511]
gi|319418235|gb|ADV45345.1| nickel-dependent hydrogenase large subunit [Nitratifractor
salsuginis DSM 16511]
Length = 422
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 60/409 (14%), Positives = 116/409 (28%), Gaps = 36/409 (8%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +++ E +G+ + R EK++ + + A+ R+ + A
Sbjct: 14 IEGEAQVLYEYEGDRIAFAQIR-FANSRHIEKILVGRDPMDALSINPRVCGICGHAHLIA 72
Query: 80 YALAVEKLLG-IEIPIRGQLIRVLYSEIGRILSHLLNVT-TQAMDVGALTPPLWGFEERE 137
A+E I + + + IR + + I +H T +G P E
Sbjct: 73 TVRALEACYDEIRLSDKAKAIREMTLSLELIQNHFKWFYLTILPLLGLEAPIERALEPSR 132
Query: 138 KLMVFYERASGSRMHAAYFRPGGVHQDIPP----ELVEDIGCWCDSFPSALNDIS-DLLT 192
+G H +Y PGG+ +I P E + + + F +L D+ D
Sbjct: 133 LAGEMIALMAGQYPHNSYAIPGGISGEITPVDLFEFTQRLDRLKELFRRSLIDVDLDTFV 192
Query: 193 GNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGS--------GAAWDLRKSQPYECYSELD 244
+ G + + S G + KS +D
Sbjct: 193 RCDRIEVMLAKEGDLPRAMQTILDRGYERLGQSLDRFIVFGGGLFQPGKSIGTRIRESID 252
Query: 245 FDI-PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLG-KNKVGPVSASDPKIVPPKRA 302
R + + E+ + R V + + S + +
Sbjct: 253 LRYLKEEAVEKSAARRVHYRNQYYETGPLARAMVMKTPLIREAHRRYKDSLFSRILARIC 312
Query: 303 DMKRSMESLIH--------HFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYR 354
++ R ++ L G G VEA +G + K
Sbjct: 313 EIPRLLDYLETLCRSIDLSEEAYIDPGPIPAEGHGAGIVEAARGSLVHQISIRE-GKIAA 371
Query: 355 CKIRAPGYAHLQ--------AMEFLCKG-HQLADVSAILGSLDIVFGEV 394
+I P +L + G H+ A + + D+
Sbjct: 372 YRITTPTQWNLGNGTRENPCPAQKALMGLHRDAPAELVFKAFDVCSVCT 420
>gi|218510338|ref|ZP_03508216.1| NADH-ubiquinone oxidoreductase chain D protein [Rhizobium etli
Brasil 5]
Length = 101
Score = 132 bits (333), Expect = 7e-29, Method: Composition-based stats.
Identities = 52/100 (52%), Positives = 67/100 (67%)
Query: 296 IVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRC 355
P + + SME+LI HF L G+ VP GEVY+A+EAPKGE G Y+ISDG KP+R
Sbjct: 1 AFPLDKDRVHCSMEALIQHFDLSAYGFKVPKGEVYSAIEAPKGELGFYIISDGSPKPFRM 60
Query: 356 KIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
K+RAP + +LQA+ + LAD+ A+LGSLD V EVD
Sbjct: 61 KVRAPSFVNLQALFGVTNARYLADMIAVLGSLDPVMAEVD 100
>gi|218459737|ref|ZP_03499828.1| NADH-ubiquinone oxidoreductase chain D protein [Rhizobium etli Kim
5]
Length = 91
Score = 131 bits (331), Expect = 1e-28, Method: Composition-based stats.
Identities = 51/89 (57%), Positives = 64/89 (71%)
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
SME+LI HF L G+ VP GEVY+A+EAPKGE G Y+ISDG KP+R K+RAP + +LQ
Sbjct: 2 SMEALIQHFDLSAYGFKVPKGEVYSAIEAPKGELGFYIISDGSPKPFRMKVRAPSFVNLQ 61
Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVD 395
A+ + LAD+ A+LGSLD V EVD
Sbjct: 62 ALFGVTNARYLADMIAVLGSLDPVMAEVD 90
>gi|303325432|ref|ZP_07355875.1| NAD-dependent dehydrogenase subunit [Desulfovibrio sp. 3_1_syn3]
gi|302863348|gb|EFL86279.1| NAD-dependent dehydrogenase subunit [Desulfovibrio sp. 3_1_syn3]
Length = 318
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 42/170 (24%), Positives = 70/170 (41%)
Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
+ GP H + GEIV ++ +G HRG E ++ + +P +
Sbjct: 146 EVAVGPVHAGIIEPGHFRFQCHGEIVLHLEIALGYQHRGLEAMLTGGPAGRRLPLLECAA 205
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ + A+ + E+L G ++P R QL+R + E+ R+ SH ++ A D G L
Sbjct: 206 GDSSVAHATAHCVLWERLTGTDVPQRAQLVRRIGLELERLASHCGDLGAIAGDTGFLPTS 265
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
W R + G+R R GGV D+ P ED+ +
Sbjct: 266 SWNGRIRGDFLNMTASLCGNRFGRGLLRYGGVAWDLDPAGCEDLAARLRA 315
>gi|332159305|ref|YP_004424584.1| sulfhydrogenase alpha subunit [Pyrococcus sp. NA2]
gi|331034768|gb|AEC52580.1| sulfhydrogenase alpha subunit [Pyrococcus sp. NA2]
Length = 428
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 59/411 (14%), Positives = 116/411 (28%), Gaps = 35/411 (8%)
Query: 17 HPA-AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMN 75
H A G + + + E V+ V +I R E + K +A+ + R+
Sbjct: 12 HIARVEGKGGVEIIVGDEGVKEVKLNIIEGPRFFEAITLGKKLDEALAIYPRICSFCSAA 71
Query: 76 QEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVT--TQAMDVGALTPPLW-- 131
+ A EK +G Q +R + I SH L++ +G +P
Sbjct: 72 HKLTALEAAEKAIGFTPREEIQALREVLYIGDMIESHALHLYLLVLPDYMGYSSPLKMVD 131
Query: 132 --------GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
+ + + +H GG + ++E +
Sbjct: 132 EYKKEIEIALKLKNLGSWMMDVLGSRAIHQENAVLGGFGKLPERSVLEKMKAKLKEALPL 191
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWG-WGFSGVMIRG-SGAAWDLRKSQPY---- 237
+L + + +I + ++ +G G I+ G + K + Y
Sbjct: 192 AEYTFELFAKLEQYSEVEGSITHLAVKPRGDAYGIYGDYIKANDGEEFPSEKYKEYIKEF 251
Query: 238 ----ECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASD 293
+ G + ++ + + L G N A
Sbjct: 252 VVEHSFAKHSHYKGKPFMVGAISRIVNNADLLYGKARDLYEANRDLLKGTNPFANNLAQA 311
Query: 294 PKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPY 353
+IV + E+L + + G + EAP+G L +
Sbjct: 312 LEIVYFMERAIDLLDEALAKWPIRARDEVEIKDGFGVSTTEAPRGILVYALKV-ENGRVA 370
Query: 354 RCKIRAPGYAHLQAMEF----LCKGHQLAD-------VSAILGSLDIVFGE 393
I P +L ME + + H D ++ + D
Sbjct: 371 YADIITPTAFNLAMMEEHVRMMAEKHYNDDPERLKLLAEMVVRAYDPCISC 421
>gi|312284558|gb|ADQ64091.1| bidirectional NAD(P) linked NiFe hydrogenase [uncultured Nostoc
sp.]
Length = 423
Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats.
Identities = 50/397 (12%), Positives = 94/397 (23%), Gaps = 73/397 (18%)
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV---- 123
+ + P++ A A +++L + IP +R L + I SH L+ +
Sbjct: 1 ICGICPVSHLLASAKTGDRILAVTIPKTATQLRRLMNLGQIIQSHALSFFHLSAPDLLLG 60
Query: 124 ---------------GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE 168
G R+ E G ++H ++ PGGV + E
Sbjct: 61 MDSEPENRNIFGLIAAEPELARGGIRLRQFGQEIIELLGGKKIHPSWAVPGGVRDPLTTE 120
Query: 169 LVEDIGCWCDSFPSALNDISDLL-TGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA 227
I + + L T + +++ G G+ G
Sbjct: 121 NRTHIQQKIPEAKATVISAIALFKTLLKTYEKEAKTFGNFPSLFMGLVSSEGLWETYDGH 180
Query: 228 AWDLR-----------------------------KSQPYECYSELDFDIPIGKHGDCY-- 256
+ KS Y D Y
Sbjct: 181 IRFVDSGGNIVADNLDAANYHEFIGEAVQADSYLKSPYYLPLGYPDSSDHCRLDSGMYRV 240
Query: 257 ---DRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIH 313
R + + + +++ A +E ++
Sbjct: 241 GPLARLNICSQIGTPLADTELKELRSYGTGTVKSSFFYHYARLIEILAAI--EHIEIILD 298
Query: 314 HFKLYTEGYHVPVG----EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
+ + G E EAP+G + D + + + AM
Sbjct: 299 DPDILSTRLCAEAGINCLEAVGVSEAPRGTLFHHYQVDENGLMLKVNLIIATGQNNLAMN 358
Query: 370 FL-------------CKGHQLADVSAILGSLDIVFGE 393
K L V A + + D
Sbjct: 359 RSVAQIARHFIQGDNIKEGMLNRVEAGIRAFDPCLSC 395
>gi|296116643|ref|ZP_06835253.1| Ni Fe-hydrogenase III large subunit-like protein [Gluconacetobacter
hansenii ATCC 23769]
gi|295976855|gb|EFG83623.1| Ni Fe-hydrogenase III large subunit-like protein [Gluconacetobacter
hansenii ATCC 23769]
Length = 514
Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats.
Identities = 78/383 (20%), Positives = 121/383 (31%), Gaps = 33/383 (8%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
+GP H L L L G V +G HRG ++ +A+ R+D A
Sbjct: 164 YGPADGGFHAPAYLRLALPGARVVDAQWWMGYAHRGVVARMQGGDPARALRLAARIDGAA 223
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWG 132
+ + A A A+E + E+ R + E+ R+ + L ++ A G
Sbjct: 224 AVAHQAALARAMEHAMRQEVGCHVAAGRAMLCELERVATVLFDIGGVAQAAGDTRLAREC 283
Query: 133 FEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLT 192
+ RE +M A G R+ GG + G CD + L
Sbjct: 284 AQAREHVMALCGAAFGRRVLMDVVAFGGEGVSVTA-FAAGGGELCDWVRVTHARLEALYR 342
Query: 193 GNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKH 252
R +G + + A G +GV+ R SG DLR P Y + +
Sbjct: 343 HPRGLGGLVRGLGVLPPDVARELGVTGVIARASGREGDLRALTP--GYHDGWLPAGVELS 400
Query: 253 GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLI 312
GD R VR+ + V+I+ + L G A
Sbjct: 401 GDVDARMRVRLGVVGGCVRILGELGAVLSGAQPAAGHGARAF------------------ 442
Query: 313 HHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLC 372
V GE E P+G ++ I AH+ A E
Sbjct: 443 -----------VGDGEGVGYSEGPRGAIRYWVRM-QDGHVAAIGICESTPAHMLASEIAM 490
Query: 373 KGHQLADVSAILGSLDIVFGEVD 395
+ D+ I+ S + D
Sbjct: 491 RDAHETDMPVIMRSFGLSPAGAD 513
>gi|14521073|ref|NP_126548.1| cytochrome-c3 hydrogenase alpha chain [Pyrococcus abyssi GE5]
gi|5458290|emb|CAB49779.1| hydA-1 cytochrome-c3 hydrogenase alpha chain [Pyrococcus abyssi
GE5]
Length = 428
Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats.
Identities = 60/411 (14%), Positives = 114/411 (27%), Gaps = 35/411 (8%)
Query: 17 HPA-AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMN 75
H A G + + + E V+ V +I R E + K +A+ + R+
Sbjct: 12 HIARVEGKGGVEIIVGDEGVKEVKLNIIEGPRFFEAITIGKKLEEALAIYPRICSFCSAA 71
Query: 76 QEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVT--TQAMDVGALTPPLW-- 131
+ A EK +G Q +R + I SH L++ +G +P
Sbjct: 72 HKLTALEAAEKAIGFTPREEIQALREVLYIGDMIESHALHLYLLVLPDYLGYSSPLKMVN 131
Query: 132 --------GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
+ + + +H GG + E +E++ S
Sbjct: 132 EYKKELEIALKLKNLGSWMMDVLGSRAIHQENAILGGFGKLPSKETLEEMKAKLRESLSL 191
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWG-WGFSGVMIRGS---------GAAWDLRK 233
+L +++ I + ++ +G G I+ S
Sbjct: 192 AEYTFELFAKLEQYREVEGEITHLAVKPRGDVYGIYGDYIKASDGEEFPSEDYKEHINEF 251
Query: 234 SQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASD 293
+ + G + + + + L G N A
Sbjct: 252 VVEHSFAKHSHYKGKPFMVGAISRVVNNKDLLYGRAKDLYESHKELLKGTNPFANNLAQA 311
Query: 294 PKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPY 353
++V + E LI + V G + EAP+G L +
Sbjct: 312 LELVYFIERAIDLIDEVLIKWPVKERDKVEVRDGFGVSTTEAPRGILVYALKV-ENGRVA 370
Query: 354 RCKIRAPGYAHLQAMEF----LCKGHQLAD-------VSAILGSLDIVFGE 393
I P +L ME + + H D ++ + D
Sbjct: 371 YADIITPTAFNLAMMEEHVRMMAEKHYNDDPERLKLLAEMVVRAYDPCISC 421
>gi|212223682|ref|YP_002306918.1| cytosolic NiFe-hydrogenase, alpha subunit [Thermococcus onnurineus
NA1]
gi|212008639|gb|ACJ16021.1| cytosolic NiFe-hydrogenase, alpha subunit [Thermococcus onnurineus
NA1]
Length = 429
Score = 129 bits (324), Expect = 8e-28, Method: Composition-based stats.
Identities = 62/416 (14%), Positives = 117/416 (28%), Gaps = 44/416 (10%)
Query: 17 HPA-AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMN 75
H A G + + + + V+ V +I R E + K +A+ + R+
Sbjct: 12 HIARVEGKGGVEIVVGDDGVKEVKLNIIEGPRFFEAITIGKKLDEALAVYPRICSFCSAA 71
Query: 76 QEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVT--TQAMDVGALTPPLW-- 131
+ A EK +G E+ Q +R + I SH L++ +G P
Sbjct: 72 HKLTAVEAAEKAVGFEVREEIQALREVLYIGDMIESHALHLYLLVLPDYMGYSNPLKMLD 131
Query: 132 --------GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
+ + + +H GG + +E +
Sbjct: 132 KYKKEINIALDLKNLGSWMMDELGARAIHQENVVMGGFGKLPDKTTLEKMKKRLQEALPL 191
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+L + ++ G + G I G + P E Y +
Sbjct: 192 AEYTFELFSKLEQYE---EVEGPIIHMAVRPRGDV-YGIYGDAISVSDGFEFPSEGYKKH 247
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKI------- 296
+ + + Y M ++ + ++L G+ K S D
Sbjct: 248 MVERVVEHSFAKHSFYNGEKPFMTGAISRVVNHADKLYGRAKELYESHKDLLRPTNPFAN 307
Query: 297 ----VPPKRADMKRSM----ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG 348
M+R + E+L + V G + EAP+G L
Sbjct: 308 NLAQALELVYFMERGIDLIDEALAKWPIRPRDEVDVKDGFGVSTTEAPRGILVYALEVK- 366
Query: 349 GNKPYRCKIRAPGYAHLQAME----FLCKGHQLAD-------VSAILGSLDIVFGE 393
+ I P +L ME + + H D ++ + D
Sbjct: 367 DGRVAYADIITPTAFNLAMMEVHVRMMAEKHYNDDPERLKLLAEMVVRAYDPCISC 422
>gi|312284580|gb|ADQ64096.1| bidirectional NAD(P) linked NiFe hydrogenase [uncultured Cyanothece
sp.]
Length = 390
Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats.
Identities = 55/386 (14%), Positives = 93/386 (24%), Gaps = 72/386 (18%)
Query: 74 MNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG--------- 124
++ A +K+L + IP + +R L + SH L+ +
Sbjct: 1 VSHLLCAAKTGDKILAVTIPPAAEKLRRLMNLGQITQSHALSFFHLSSPDXLLGWDSDPG 60
Query: 125 ----------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIG 174
G R+ E ++H A+ PGGV +P E I
Sbjct: 61 QRNVFGLIASDPELARQGIRLRQFGQKIIELLGAKKIHPAWSVPGGVRSPLPEEGRAWIR 120
Query: 175 CWCDSFPSALNDISDLLTGN-RIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA------ 227
++ L F N G G G+ G
Sbjct: 121 ERLPESYQTIHTALALFKELLERFSTEVANFGEFPSLFMGLVGKDGLWEHYGGHIRFTDS 180
Query: 228 -----------------------AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMM 264
W K Y+ + +G
Sbjct: 181 QGNIVADNLREEDYQDYIGESVEKWSYLKFPYYKPLGYPEGIYRVGPLARLNVCSRFGTP 240
Query: 265 EMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHV 324
+ ++ R V G ++V A +E+LI + +
Sbjct: 241 QADGELREYRDRV----GGVATSSFYYHYARLVEILGA--LEGIEALIEDGDIVSHRTRA 294
Query: 325 PVG----EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFL--------C 372
G E EAP+G + D + + + AM
Sbjct: 295 QGGINALEGVGVSEAPRGTLFHHYHVDEDGLIEKVNLIIATGNNNLAMNKTVAQIAKHYI 354
Query: 373 KGHQLAD-----VSAILGSLDIVFGE 393
GH + + V A + D
Sbjct: 355 HGHDIPEGMLNRVEAGIRCYDPCLSC 380
>gi|153007143|ref|YP_001381468.1| nickel-dependent hydrogenase large subunit [Anaeromyxobacter sp.
Fw109-5]
gi|152030716|gb|ABS28484.1| nickel-dependent hydrogenase large subunit [Anaeromyxobacter sp.
Fw109-5]
Length = 498
Score = 128 bits (323), Expect = 1e-27, Method: Composition-based stats.
Identities = 59/449 (13%), Positives = 113/449 (25%), Gaps = 75/449 (16%)
Query: 20 AHGVLRLILELD-GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + LD E + L RG E+ + + + V P
Sbjct: 13 LEGHGKIEVFLDADGNAESAFLQVPEL-RGFERFCVGRPAEEMPQLTAHVCGVCPAAHHL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA------------- 125
A A A++ + G+ P + I+ LY + HLL+
Sbjct: 72 AAARALDAMYGVVPPAAARKIQALYYNLFIFEDHLLHYWYMGGPDFYAGSSAPAPMRSIV 131
Query: 126 -------LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
R++ +G +H + PGGV + + P+ V
Sbjct: 132 GVLAKVGADLGRRILGARKEARELMAAIAGRTIHPVFALPGGVSRPLDPDTVRRARELAP 191
Query: 179 SFPSALNDISDLL-------------TGNRIFKQRNVNIGTVKLEDAWGWGF-------- 217
D + + +++ R ++G V +
Sbjct: 192 GLVRFAADTLESFRAAVLGSGEYGEALSSEMYRVRCHSMGMVDEAGRLTFLDGVLRIVDP 251
Query: 218 -SGVMIRGSGAAW-----DLRKSQPYECYSELDFDIPIGKHG---------DCYDRYLVR 262
G + R + W + + Y + L G R V
Sbjct: 252 RGGELARFAPRDWLLHLAERVEPWTYAKLTFLKAKGWTGFTEGDDSGLYRVGPLARLNVA 311
Query: 263 MMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME----SLIHHFKLY 318
+ RQ + LG ++ ++V +A L
Sbjct: 312 REMATPLAEAERQRLFDALGWPAHQTLAFHWARLVEALQAAEAIEALAADPDLEAREVRT 371
Query: 319 TEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME----FLCKG 374
E VEAP+G + +D + + ++ +G
Sbjct: 372 VPAPLAGPSEGVGVVEAPRGTLIHHFAADASGLLTAANLVVASQHNAAPVQISVRKAARG 431
Query: 375 ---------HQLADVSAILGSLDIVFGEV 394
L + + D
Sbjct: 432 LIRNGKVDPALLNQLEMAFRAYDPCNACA 460
>gi|18977266|ref|NP_578623.1| sulfhydrogenase alpha subunit [Pyrococcus furiosus DSM 3638]
gi|562777|emb|CAA53037.1| hydrogenase (alpha subunit) [Pyrococcus furiosus DSM 3638]
gi|18892935|gb|AAL81018.1| sulfhydrogenase alpha subunit [Pyrococcus furiosus DSM 3638]
Length = 428
Score = 128 bits (323), Expect = 1e-27, Method: Composition-based stats.
Identities = 59/411 (14%), Positives = 116/411 (28%), Gaps = 35/411 (8%)
Query: 17 HPA-AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMN 75
H A G + + + + V+ V +I R E + K +A+ + R+
Sbjct: 12 HIARVEGKGGVEIIIGDDGVKEVKLNIIEGPRFFEAITIGKKLEEALAIYPRICSFCSAA 71
Query: 76 QEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVT--TQAMDVGALTPPLW-- 131
+ A EK +G Q +R + I SH L++ G +P
Sbjct: 72 HKLTALEAAEKAVGFVPREEIQALREVLYIGDMIESHALHLYLLVLPDYRGYSSPLKMVN 131
Query: 132 --------GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
+ + + +H GG + ++E +
Sbjct: 132 EYKREIEIALKLKNLGTWMMDILGSRAIHQENAVLGGFGKLPEKSVLEKMKAELREALPL 191
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWG-WGFSGVMIRGS-GAAWDLRKSQPY---- 237
+L + + I + ++ +G G I+ S G + K + Y
Sbjct: 192 AEYTFELFAKLEQYSEVEGPITHLAVKPRGDAYGIYGDYIKASDGEEFPSEKYRDYIKEF 251
Query: 238 ----ECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASD 293
+ G + ++ ++ + L G N A
Sbjct: 252 VVEHSFAKHSHYKGRPFMVGAISRVINNADLLYGKAKELYEANKDLLKGTNPFANNLAQA 311
Query: 294 PKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPY 353
+IV + E+L + + G + EAP+G L +
Sbjct: 312 LEIVYFIERAIDLLDEALAKWPIKPRDEVEIKDGFGVSTTEAPRGILVYALKV-ENGRVS 370
Query: 354 RCKIRAPGYAHLQAMEF----LCKGHQLAD-------VSAILGSLDIVFGE 393
I P +L ME + + H D ++ + D
Sbjct: 371 YADIITPTAFNLAMMEEHVRMMAEKHYNDDPERLKILAEMVVRAYDPCISC 421
>gi|47570873|ref|ZP_00241400.1| NADH dehydrogenase I, D subunit [Bacillus cereus G9241]
gi|47552459|gb|EAL10983.1| NADH dehydrogenase I, D subunit [Bacillus cereus G9241]
Length = 81
Score = 128 bits (323), Expect = 1e-27, Method: Composition-based stats.
Identities = 62/81 (76%), Positives = 72/81 (88%)
Query: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
+ TINFGPQHPAAHGVLRL++EL+GE+V+R +PHIG LH GTEKLIE KT+LQAVPYFD
Sbjct: 1 NTTTINFGPQHPAAHGVLRLVVELEGEVVQRAEPHIGXLHXGTEKLIEYKTYLQAVPYFD 60
Query: 67 RLDYVAPMNQEHAYALAVEKL 87
RLDYV+PM QEHA+ALA E L
Sbjct: 61 RLDYVSPMCQEHAFALATENL 81
>gi|256828573|ref|YP_003157301.1| nickel-dependent hydrogenase large subunit [Desulfomicrobium
baculatum DSM 4028]
gi|256577749|gb|ACU88885.1| nickel-dependent hydrogenase large subunit [Desulfomicrobium
baculatum DSM 4028]
Length = 569
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 46/366 (12%), Positives = 93/366 (25%), Gaps = 75/366 (20%)
Query: 102 LYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGV 161
+++ + H +++ A L + K H + GGV
Sbjct: 187 IFTNAYFLGGHKAYYLPAEVNLIATAHYLEALHLQVKAARAMAVFGAKNPHTQFTVVGGV 246
Query: 162 HQDI--PPELVEDIGCWCDSFPSALNDIS--DLLTGNRIFKQ------------------ 199
E + + +++ DLL +K
Sbjct: 247 TCYESLTDERIAEFVGLFQETKQFIDECYIPDLLAVASYYKDWAGIGGTTNFLSFGEFPA 306
Query: 200 -------RNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRK----SQPYECYSELDFDIP 248
R + G + + G G + + PY +E +
Sbjct: 307 VDSDMNSRWIPQGVIMNRNIAGVGNFDPKLIEEHVRHSWYQGDKAHHPYTGVTEPQYTSY 366
Query: 249 IGKHGDCYDRYLVRMMEMRESVKI-------------IRQCVNRLLGKNKVGPVSASDPK 295
+ + + E E+ + +++ V+ +LG VG +
Sbjct: 367 EDRDRYSWMKAPRYNGESMETGPLATVLIAYGKGHPEVKKLVDYVLGHLGVGAPALFSTL 426
Query: 296 IVPPKR--------ADMKRSMESLIHHFK-----LYTEGYHVPVGEVYAAVEAPKGEFGV 342
R + + L + K +Y + E V AP+G
Sbjct: 427 GRTAARGIETKVIADKLMDWVNELAENVKSGNTKIYQDWTMPDEAEGVGYVNAPRGALSH 486
Query: 343 YLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLADVS------AILGSL 387
++ G K ++ P + A+E G +AD + S
Sbjct: 487 WIKIKG-GKIENFQLVVPSTWNFGPRCSNNKMSAVEEALIGTPIADAERPVEILRTVHSF 545
Query: 388 DIVFGE 393
D
Sbjct: 546 DPCIAC 551
Score = 98.9 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 3/104 (2%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L++ +E+D V V L RG E +++ + A + R V A
Sbjct: 33 IEGHLKIEVEVDQGKVTNV-WSSSQLFRGLELILKGRDPRDAQHFTQRSCGVCTYTHALA 91
Query: 80 YALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
V+ +G++ +P +LIR L + H+++
Sbjct: 92 STRCVDNAVGVDKNLPDNARLIRNLVLAAQFLHDHIVHFYHLHA 135
>gi|225011983|ref|ZP_03702421.1| nickel-dependent hydrogenase large subunit [Flavobacteria bacterium
MS024-2A]
gi|225004486|gb|EEG42458.1| nickel-dependent hydrogenase large subunit [Flavobacteria bacterium
MS024-2A]
Length = 624
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 59/536 (11%), Positives = 118/536 (22%), Gaps = 167/536 (31%)
Query: 24 LRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALA 83
+++L+ + V + + L RG E +++ + A R V ALA
Sbjct: 67 FHSVVDLEKKKVLSTN-SMATLFRGYEVILKGRDPRDAAYISSRACGVCGGVHATTAALA 125
Query: 84 VEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV-------------------- 123
+E L I+ P G ++R + I + H L++ A
Sbjct: 126 IEMALEIKPPPLGIVMRNILLAIEYMYDHPLHLFLLAGPDYSEELVRETNPELIDKAATT 185
Query: 124 --------GALT--------------PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGV 161
G T L Y G H PGG+
Sbjct: 186 KAKNKDVHGYDTVLDIMKDLNPLKGKLYLEALTMTRVAREAYVLIGGKYPHPQSVVPGGL 245
Query: 162 HQDIPPELVEDIGCWCDSFPSA-------LNDISDLLTG--------------------- 193
+ ++ ++ F +D+ D
Sbjct: 246 SVTVNASMLNEVYSRLIKFFDYSQKVTGIWDDVFDFFLESNPEYAKCGIRPATMMDTGVW 305
Query: 194 -------------NRIFKQRNVNIGTV-------------------KLEDAWGWGFSGVM 221
+ + R G + +E ++ + G
Sbjct: 306 DRPDHYDAKFENCDTWGEARWSTPGVLVDGEVVTTKLTELNAGMEEFVEHSYYEKWDGHR 365
Query: 222 IRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCV---- 277
+ L + P+ + K +D E+ R +
Sbjct: 366 FKEDPNGMPLSPNHPWNKETIPKPGKQSWKDRYSWDTAPTWDRMPMEAGAYTRMYMTAKA 425
Query: 278 -----------------------------------NRLLGKNKVGPVSASDPKIVPPKRA 302
+ + P
Sbjct: 426 QKAPASKFLENTGTSMKIHVPKHLLPEKTLEWKIPEHWNAFERNRARAYCIPYSAMVAME 485
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVG---EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
+ +M+ + + + Y +P + A A +G +LI +I
Sbjct: 486 NWMMAMDLIKNGDTKVSVPYEIPKKGTHIGFGAWGAGRGFLTHHLII-ENGLIENYQIIT 544
Query: 360 PGYAH---------LQAMEFLCKGHQLA------------DVSAILGSLDIVFGEV 394
P + + E + D+ + S D
Sbjct: 545 PSTLNAAPRTPWGEMGPYEEAVLNTPILEKFDKPEDYKGIDILRAIRSFDPCMPCT 600
>gi|296134473|ref|YP_003641720.1| nickel-dependent hydrogenase large subunit [Thermincola sp. JR]
gi|296033051|gb|ADG83819.1| nickel-dependent hydrogenase large subunit [Thermincola potens JR]
Length = 440
Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 60/430 (13%), Positives = 113/430 (26%), Gaps = 70/430 (16%)
Query: 23 VLRLILELDGEIVERVDPHIGLLHRG---TEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
L + LE +G + I RG EK++ + A+ R++ + A
Sbjct: 15 PLSVELEYEGARIRSARVGI----RGYWNFEKMLVGRHPFDALQVALRINSHLSVAHGLA 70
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL------------- 126
A A+E + G+E G L R + I HL + +
Sbjct: 71 AAKALESISGMEKTFNGMLARNILQGCEFIYYHLYHFYQGILFAYIPGPKDEDMLPGPAR 130
Query: 127 ----------TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCW 176
R +L +G H PGG+ + + + + +
Sbjct: 131 IPVQQSKVLIEHYWQAMHFRTRLQEMMALLAGRVPHQVTVVPGGLSETLDTRKILKLLAY 190
Query: 177 CDSFP-----------SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGS 225
+ L + + R + + + + G RGS
Sbjct: 191 LEEIKGFISNTYINDVKILMQYYPEWATTPVGQNRYLAVHSFPQKLLKSGQEEGWYWRGS 250
Query: 226 GAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNK 285
+ + D K+GD Y S + + R + +
Sbjct: 251 SLDAVQPEDIELDDTFSWDPHGDTDKNGDKAAAYSWLKAGRYRSNVVEVGSLARAIANGR 310
Query: 286 VGPVSASDPKIVPPKRA------------DMKRSMESLIHHFKLY-TEGYHVPVGEVYAA 332
+ ++ R +K + L L + G A
Sbjct: 311 SIMMQPNERMNSVLGRELIKAGECIDLLDAIKNWINYLKPEKALAGSPLIVPKEGTGVAT 370
Query: 333 VEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLAD---- 379
VE+P G +I I P + +E G +A+
Sbjct: 371 VESPAGPVLHKIIL-EKGLIKEYLIIDPFVFNYSPKDKLGANGPVEQALIGLTVANLQYP 429
Query: 380 --VSAILGSL 387
+ +L +
Sbjct: 430 IEIVRVLRAF 439
>gi|315230300|ref|YP_004070736.1| sulfhydrogenase II subunit a [Thermococcus barophilus MP]
gi|315183328|gb|ADT83513.1| sulfhydrogenase II subunit a [Thermococcus barophilus MP]
Length = 426
Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 57/414 (13%), Positives = 107/414 (25%), Gaps = 40/414 (9%)
Query: 17 HPA-AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMN 75
H A G + + + E V+ V +I R E + K +A+ + R+
Sbjct: 9 HIARVEGKGGIEIVMGDEGVKEVKLNIIEGPRFFEAITIGKKLDEALAVYPRICSFCSAA 68
Query: 76 QEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVT--TQAMDVGALTP----- 128
+ A EK +G Q +R L I SH L++ +G P
Sbjct: 69 HKLTALEAAEKAIGFTPREEIQKLRELLYIGDMIESHALHLYLLVLPDYLGYPDPLSMID 128
Query: 129 -----PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
+ + + + +H GG + E++
Sbjct: 129 RYKREVEYAMKLKNIGSKIMDVLGSRAIHQENAILGGFGKLPSRAQFEELRRELKEILPL 188
Query: 184 LNDISDLLTGNRIF-------------KQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWD 230
+L F K R G GF + W
Sbjct: 189 AEYTVELFAKLEQFSEVDDEENVHMAIKPRGGIYGIYGDYVKVSDGFEFPVE--DYKKWI 246
Query: 231 LRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVS 290
+ + + + G + + + + + N
Sbjct: 247 VERVVEHSFAKHSFYKGKPFMVGAISRIVNNADLLYGRAKALYEKYRDLFRYDNCFANNL 306
Query: 291 ASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGN 350
A ++V + E+L + + G + EAP+G L
Sbjct: 307 AQALELVYFTEKAVDIIDETLARWPIRERDAVEIKDGFGVSITEAPRGLLVYALEVK-NG 365
Query: 351 KPYRCKIRAPGYAHLQAME----FLCKGHQLADV-------SAILGSLDIVFGE 393
+ I P +L ME + + H D ++ + D
Sbjct: 366 RVSYADIITPTAMNLAIMERHVRMMAEKHYQDDPDRLKFLSEMVVRAFDPCISC 419
>gi|312284574|gb|ADQ64094.1| bidirectional NAD(P) linked NiFe hydrogenase [uncultured
Methylococcaceae bacterium]
Length = 396
Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats.
Identities = 51/389 (13%), Positives = 114/389 (29%), Gaps = 63/389 (16%)
Query: 68 LDYVAPMNQEHAYALAVEKLLGIE-IPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV--- 123
+ + P++ A A A+++++G++ + +R L + SH ++ A
Sbjct: 1 ICGICPVSHHLAAAKAIDQIVGVKQLTATSNNLRRLMHFGQTLQSHAVHFFHLASPDLLF 60
Query: 124 ----------------GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP 167
+ G + R+ + +G R+H PGG+++ +
Sbjct: 61 GFNDDVSHRHILSVIAEHPEIGMQGIQLRKYGQEVIKAIAGKRVHGNAAVPGGMNKALSK 120
Query: 168 ELVEDIGCWCDSFPSALNDISDLLTG-NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSG 226
E + D + DL+ + +Q + N ++ G + G
Sbjct: 121 EDHAFLLKDIDQIIAWSQGAVDLIKKVHLNNRQFHYNFARIETNMLSMIREDGALELYHG 180
Query: 227 AAWDLRKSQPYECYSELDF-----DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL 281
RK + LD+ I Y ++ + E E + R+
Sbjct: 181 GLR-ARKPNGETIFDHLDYCNYFNVIHEEVRPWSYMKFPFIVSEGMEKGWYRVGPLARVN 239
Query: 282 GKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVG-------------- 327
+ + A ++ +D +L H+ E H
Sbjct: 240 NCDFIDTPLAEAARLEFKAHSDEAMVHSTLAFHWTRLIETLHCAESIKMLLNDPDIMGHD 299
Query: 328 ---------EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK----- 373
E +EAP+G + D + + + ++ M +
Sbjct: 300 LVAQGEKRYEGIGVIEAPRGTLFHHYQVDENDIVTKANLIVSTTSNNMGMNESVRQVAAE 359
Query: 374 ---GHQLA-----DVSAILGSLDIVFGEV 394
G +L ++ + + D
Sbjct: 360 YLSGRELTEPLLNNLEVAIRAYDPCLSCA 388
>gi|296272893|ref|YP_003655524.1| nickel-dependent hydrogenase large subunit [Arcobacter nitrofigilis
DSM 7299]
gi|296097067|gb|ADG93017.1| nickel-dependent hydrogenase large subunit [Arcobacter nitrofigilis
DSM 7299]
Length = 450
Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats.
Identities = 75/445 (16%), Positives = 128/445 (28%), Gaps = 76/445 (17%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +L L + V L RG E ++E K L A+ Y R+ + A
Sbjct: 10 IEGEAKLNLIWKDKKVSDASID-FLNFRGFEYILENKPILDALVYTPRICGICGQAHLLA 68
Query: 80 YALAVEKLLG-----IEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV----------G 124
A+E L ++I + +++R L I I SH+ M G
Sbjct: 69 TVNAIENLYKNSGNELQITNKAKILRELGLIIEIIDSHIKWFYMFIMPDVIEISKKQYEG 128
Query: 125 ALTPPLWGFEEREK----LMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+ +K ++ +G H +Y PGGV D + + D
Sbjct: 129 YTPLKGEKWLGAQKGASEIIKALAIYAGQWPHTSYMLPGGVVSDPTLLDIVTCENYIDQT 188
Query: 181 PSALND------ISDLLTGNRI-----------------FKQRNVNIGTVKLEDAWGWGF 217
I L+ N F+ + +G
Sbjct: 189 IKYFEKDIAGISIEKYLSLNSFEELTSLSSSLRDFVDISFETKLEQVGKAHNRHLVLSDM 248
Query: 218 SGVMIRGSGAAW-------DLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESV 270
GV SG DL K + E Y+ + K + + + + E
Sbjct: 249 IGV---KSGFFNKKISINLDLSKIKESEEYT-FKLEKRNDKKAHTWSKSVQYNKQFYEVG 304
Query: 271 KIIRQCV-NRLLGKNKVGPVSASDPKIVPPKRADMKRSME---SLIHHFKLYTEGYHVPV 326
+ R + R + S V + ++ + LI + + Y P
Sbjct: 305 PLSRAVINEREFITALHNKYADSTFTRVMSRVDEIAHLLIYSKKLIKQIDISEDSYIKPK 364
Query: 327 GE--------VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA--------MEF 370
+ + VEA +G +S + + P +L +
Sbjct: 365 VDLKSLENISATSTVEACRGSLVHT-VSVNKGLITKYDVITPTVWNLGPRNNDELGVSQK 423
Query: 371 LCKGHQ-LADVSAILGSLDIVFGEV 394
G + L + IL S DI
Sbjct: 424 AIIGSKSLNEAKIILRSFDICSVCT 448
>gi|297520099|ref|ZP_06938485.1| hydrogenase 3, large subunit [Escherichia coli OP50]
Length = 275
Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKT-FLQAVP 63
++ + GP H + L +DGE + D + +HRG EKL ET+ + +
Sbjct: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVL 102
DR+ + AY +VE +GI++P R Q+IR +
Sbjct: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAI 274
>gi|14591104|ref|NP_143179.1| cytochrome-c3 hydrogenase alpha chain [Pyrococcus horikoshii OT3]
gi|3257714|dbj|BAA30397.1| 429aa long hypothetical cytochrome-c3 hydrogenase alpha chain
[Pyrococcus horikoshii OT3]
Length = 429
Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats.
Identities = 62/398 (15%), Positives = 114/398 (28%), Gaps = 35/398 (8%)
Query: 30 LDGEI-VERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLL 88
L GE V+ V +I R E + K +A+ + R+ + A EK +
Sbjct: 25 LVGEDGVKEVKLNIIEGPRFFEAITLGKKLEEALAIYPRICSFCSAAHKLTALEAAEKAI 84
Query: 89 GIEIPIRGQLIRVLYSEIGRILSHLLNVT--TQAMDVGALTPPLW----------GFEER 136
G Q +R + I SH L++ +G +P + +
Sbjct: 85 GFTPREEIQALREILYIGDIIESHALHLYLLVLPDYLGYSSPLKMVDEYKKELETAIKLK 144
Query: 137 EKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRI 196
+ +H GG + E +E I S +L +
Sbjct: 145 NLGSWIMDVLGARAIHQENAILGGFGKLPSKETLEKIKDELKSALPLAEYTFELFSKLEQ 204
Query: 197 FKQRNVNIGTVKLEDAWG-WGFSGVMIRGS-GAAWDLRKSQPY--------ECYSELDFD 246
+K+ I + ++ +G G I+ S G + + + Y +
Sbjct: 205 YKEVEGEITHLAVKPRKDAYGIYGDRIKASDGEEFPSEEYKNYIKEFVVEHSFAKHSHYK 264
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
G + ++ ++ + L N A +IV +
Sbjct: 265 GRPFMVGAISRLVNNHKLLYGKAKELYENNKDLLRPTNPFANNLAQALEIVYFMERAIDL 324
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
E L + V G + EAP+G L + I P +L
Sbjct: 325 IDEVLAKWPIKPRDEVKVRDGFGVSTTEAPRGILVYALKV-ENGRVSYADIITPTAFNLA 383
Query: 367 AME----FLCKGHQLAD-------VSAILGSLDIVFGE 393
ME + + H D ++ + D
Sbjct: 384 MMERHVRMMAEEHYKDDPEKLKLLAEMVVRAYDPCISC 421
>gi|213612347|ref|ZP_03370173.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Typhi str. E98-2068]
Length = 99
Score = 125 bits (315), Expect = 9e-27, Method: Composition-based stats.
Identities = 38/99 (38%), Positives = 55/99 (55%)
Query: 298 PPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKI 357
PP + + +E+LI HF + G +P E + VEA KG YL SDG YR ++
Sbjct: 1 PPPKERTLQHIETLITHFLQVSWGPVMPAQESFQMVEATKGINSYYLTSDGSTMSYRTRV 60
Query: 358 RAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
R P +AHLQ + +G ++D+ LGS+D V +VDR
Sbjct: 61 RTPSFAHLQQIPSAIRGSLVSDLIVYLGSIDFVMSDVDR 99
>gi|2746740|gb|AAB94936.1| NiFe hydrogenase alpha subunit [Thermococcus litoralis DSM 5473]
Length = 426
Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats.
Identities = 58/414 (14%), Positives = 109/414 (26%), Gaps = 40/414 (9%)
Query: 17 HPA-AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMN 75
H A G + + E V+ V +I R E + K +A+ + R+ +
Sbjct: 9 HIARVEGKGGIEIVTSDEGVKEVKLNIIEGPRFFEAITIGKKLEEALAIYPRVCSFCSAS 68
Query: 76 QEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVT--TQAMDVGALTPP---- 129
+ A EK +G Q +R L I SH L++ +G P
Sbjct: 69 HKLTALEAAEKAIGFTPRPEIQDLRELLYMGDTIESHALHLYLLVLPDYLGYSNPLAMVD 128
Query: 130 ------LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
+ + + +H GG + E++
Sbjct: 129 KYKKEIEYAMALKNVGSKIMDYLGSRAIHQENVVLGGFGKLPTKAQFEELRRELKEALPL 188
Query: 184 LNDISDLLTGNRIF-------------KQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWD 230
+L + + K RN G GF +
Sbjct: 189 AEYTVELFSKLEQYEEVTDDEMVHMAVKPRNDVYGIYGDYIKVSDGFEFPVE--DYKKHI 246
Query: 231 LRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVS 290
+ K + + G + ++ ++ Q + L N
Sbjct: 247 VEKVVEHSFAKHSFYKGKPFMVGAISRIVNNADLLYGKAKELYTQYKDLLRYNNCFANNF 306
Query: 291 ASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGN 350
A ++V + ++L + + G + EAP+G L
Sbjct: 307 AQAIELVYFIEKSIDIIDDTLAKWPVKERDEVELKDGFGVSITEAPRGLLVYALEVK-DG 365
Query: 351 KPYRCKIRAPGYAHLQAME----FLCKGHQLAD-------VSAILGSLDIVFGE 393
+ I P +L ME + + H D + + D
Sbjct: 366 RVNYADIITPTAMNLAIMERHVRMMAENHWQDDPERLKLLAEMTVRAYDPCISC 419
>gi|296537108|ref|ZP_06899069.1| hydrogenase subunit [Roseomonas cervicalis ATCC 49957]
gi|296262565|gb|EFH09229.1| hydrogenase subunit [Roseomonas cervicalis ATCC 49957]
Length = 324
Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 71/158 (44%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
I GP L + GE V R++ G HRG L+ +T QA P R+
Sbjct: 140 IPLGPIQGGFGEPAHWRLHVRGETVLRLEVLPGYAHRGVLALLRGRTLEQAAPLVARIAG 199
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ + A+ALA E+ LGI P R +R + +E+ RI +HL ++ + G P
Sbjct: 200 DSTVAHSWAFALAAERALGIAAPARAAALRGVMAELERIANHLRDIGAICAEAGFHWPDS 259
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE 168
RE ++ A G R+ PGGV +D+ PE
Sbjct: 260 RCGALREAVLRAAGAAFGHRLMMDGVVPGGVARDLSPE 297
>gi|57642004|ref|YP_184482.1| cytosolic NiFe-hydrogenase, alpha subunit [Thermococcus
kodakarensis KOD1]
gi|21327888|dbj|BAC00531.1| sulfhydrogenase alpha subunit [Thermococcus kodakaraensis]
gi|57160328|dbj|BAD86258.1| cytosolic NiFe-hydrogenase, alpha subunit [Thermococcus
kodakarensis KOD1]
Length = 428
Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats.
Identities = 53/411 (12%), Positives = 110/411 (26%), Gaps = 35/411 (8%)
Query: 17 HPA-AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMN 75
H A G + + + + V+ V +I R E + K +A+ + R+
Sbjct: 12 HIARVEGKGGVEIVVGDDGVKEVKLNIIEGPRFFEAITLGKKLDEALAIYPRICSFCSAA 71
Query: 76 QEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNV------------TTQAMDV 123
+ A EK +G Q +R + I SH L++ M
Sbjct: 72 HKLTAVEAAEKAIGFTPREEIQALREVLYIGDMIESHALHLYLLVLPDYLGYSGPLHMID 131
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
+ + + +H GG + ++E++
Sbjct: 132 EYKKEMSIALDLKNLGSWMMDELGSRAIHQENAVLGGFGKLPDKSVLENMKRRLKEALPK 191
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLED-AWGWGFSGVMIRGS---------GAAWDLRK 233
+L T +++ I + ++ +G G ++ S
Sbjct: 192 AEYTFELFTKLEQYEEVEGPITHIAVKPRNGVYGIYGDYLKASDGNEFPSEEYREHIKEF 251
Query: 234 SQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASD 293
+ + G + ++ + L N A
Sbjct: 252 VVEHSFAKHSHYHGKPFMVGAISRLVNNADTLYGRAKELYESYKDLLRSTNPFANNLAQA 311
Query: 294 PKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPY 353
++V + E+L + + G + EAP+G L +
Sbjct: 312 LELVYFTERAIDLIDEALAKWPIRPRDEVALKDGFGVSTTEAPRGVLVYALKV-ENGRVS 370
Query: 354 RCKIRAPGYAHLQAMEF----LCKGHQLAD-------VSAILGSLDIVFGE 393
I P +L ME + + H D ++ + D
Sbjct: 371 YADIITPTAFNLAMMEQHVRMMAEKHYNDDPEKLKLLAEMVVRAYDPCISC 421
>gi|242398276|ref|YP_002993700.1| NiFe hydrogenase I, catalytic subunit alpha [Thermococcus sibiricus
MM 739]
gi|242264669|gb|ACS89351.1| NiFe hydrogenase I, catalytic subunit alpha [Thermococcus sibiricus
MM 739]
Length = 427
Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats.
Identities = 60/416 (14%), Positives = 114/416 (27%), Gaps = 43/416 (10%)
Query: 17 HPA-AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMN 75
H A G + + E ++ V +I R E + K +A+ + R+
Sbjct: 9 HIARVEGKGGIEIVTSDEGIKEVKLNIIEGPRFFEAITLGKKLEEALAVYPRICSFCSAA 68
Query: 76 QEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVT------------TQAMDV 123
+ A EK +G Q +R L I SH L++ AM
Sbjct: 69 HKLTAVEAAEKAVGFTPRPEIQDLRDLLYIGDMIESHALHLYLLVLPDYLGYSNPLAMVD 128
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA 183
+ + + + + +H GG + E++
Sbjct: 129 KYMKEIEYAMALKNIGSKIMDYLASRAIHQENAILGGFGKLPTRSQFEELKKELKEALPM 188
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
+L + ++ + + + G G I G P E Y +
Sbjct: 189 AEYTVELFSKLDQYE-EVKDEEMIHMAVKPRNGVYG--IFGDYIKVSDGFKFPVEDYKKH 245
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESV---------------KIIRQCVNRLLGKNKVGP 288
+ +G + Y M ++ ++ Q + L N
Sbjct: 246 IVEKVVGHSFAKHSFYNNEKHFMVGAISRIVNNADLLYGRAKELYSQYKDLLRYDNCFAN 305
Query: 289 VSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG 348
A ++V + ++L + + G + EAP+G L
Sbjct: 306 NFAQALELVYFVERAIDIIDDTLAKWPIKERDEVEIKDGFGVSITEAPRGLLVYALEVK- 364
Query: 349 GNKPYRCKIRAPGYAHLQAME----FLCKGHQLAD-------VSAILGSLDIVFGE 393
K I P +L ME + + H D + + D
Sbjct: 365 DGKVDYVDIITPTAMNLAIMERHVRMMAEKHWQDDPETLKLLTEMTVRAYDPCISC 420
>gi|3318795|pdb|2FRV|L Chain L, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
gi|3318797|pdb|2FRV|B Chain B, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
gi|3318799|pdb|2FRV|D Chain D, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
gi|3318801|pdb|2FRV|F Chain F, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
gi|3318803|pdb|2FRV|H Chain H, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
gi|3318805|pdb|2FRV|J Chain J, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
Length = 536
Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats.
Identities = 47/366 (12%), Positives = 95/366 (25%), Gaps = 75/366 (20%)
Query: 102 LYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGV 161
+++ + H V +D+ A L + K H + GG
Sbjct: 169 IFTNAYFLGGHPAYVLPAEVDLIATAHYLEALRVQVKAARAMAIFGAKNPHTQFTVVGGC 228
Query: 162 HQDIP--PELVEDIGCWCDSFPSALND-ISDLLTGNRIFKQRNVNIG------------- 205
PE + + + L F + IG
Sbjct: 229 TNYDSLRPERIAEFRKLYKEVREFIEQVYITDLLAVAGFYKNWAGIGKTSNFLTCGEFPT 288
Query: 206 -------------TVKLEDAWGWGFSGVMIRGSGAAWDLRK----SQPYECYSELDFDIP 248
+ D + + + PY+ ++ +
Sbjct: 289 DEYDLNSRYTPQGVIWGNDLSKVDDFNPDLIEEHVKYSWYEGAGAHHPYKGVTKPKWTEF 348
Query: 249 IGKHGDCYDRYLVRMMEMRESVKI-------------IRQCVNRLLGKNKVGPVSASDPK 295
G+ + + E E + + V+ +L VGP +
Sbjct: 349 HGEDRYSWMKAPRYKGEAFEVGPLASVLVAYAKKHEPTVKAVDLVLKTLGVGPEALFSTL 408
Query: 296 IVPPKRA--------DMKRSMESLIHHFK-----LYTEGYHVPVGEVYAAVEAPKGEFGV 342
R +++ ++ L + K LYT+ + + V AP+G
Sbjct: 409 GRTAARGIQCLTAAQEVEVWLDKLEANVKAGKDDLYTDWQYPTESQGVGFVNAPRGMLSH 468
Query: 343 YLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLAD------VSAILGSL 387
+++ G K ++ P + L A+E G +AD + + S
Sbjct: 469 WIVQRG-GKIENFQLVVPSTWNLGPRCAEGKLSAVEQALIGTPIADPKRPVEILRTVHSY 527
Query: 388 DIVFGE 393
D
Sbjct: 528 DPCIAC 533
Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E++G ++ + L RG E +++ + A + R V A
Sbjct: 17 IEGHLRIEVEVEGGKIKNA-WSMSTLFRGLEMILKGRDPRDAQHFTQRACGVCTYVHALA 75
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AV+ +G++IP L+R L + HL++
Sbjct: 76 SVRAVDNCVGVKIPENATLMRNLTMGAQYMHDHLVHFYHLHA 117
>gi|242279387|ref|YP_002991516.1| nickel-dependent hydrogenase large subunit [Desulfovibrio
salexigens DSM 2638]
gi|242122281|gb|ACS79977.1| nickel-dependent hydrogenase large subunit [Desulfovibrio
salexigens DSM 2638]
Length = 569
Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats.
Identities = 45/366 (12%), Positives = 84/366 (22%), Gaps = 75/366 (20%)
Query: 102 LYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGV 161
+++ + H ++ A L G + K H + GGV
Sbjct: 187 IFTNAYFLGGHDAYYLRPEENLIATAHYLEGLHLQVKAARAMAVFGAKNPHTQFTIVGGV 246
Query: 162 HQDI---PPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIG------------- 205
P + E + ++ L + + IG
Sbjct: 247 TCYDSLTPKRIQEFKDLYNETMAFVNECYIPDLLMVASYYKDWAGIGGTTNFLTFGEFPD 306
Query: 206 -------------TVKLEDAWGWGFSGVMIRGSGAAWDLRKS----QPYECYSELDFDIP 248
+ D + PY+ +E +
Sbjct: 307 VEADINSRFLEQGVIMNRDLSNVMDFNPDSIKEDISHSWYDGDSSLHPYDGETEPKYTNY 366
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD----- 303
+ + + E E + + V+ G V PV +
Sbjct: 367 EDRDRYSWMKAPRYKGESMEVGPLAQMLVSYARGNKDVVPVVNHVLSTLGVGPEALFSTL 426
Query: 304 ----------------MKRSMESLIHHF-----KLYTEGYHVPVGEVYAAVEAPKGEFGV 342
M + +L + L E E V AP+G
Sbjct: 427 GRTAARGIETVVAGTKMVEWVNNLEDNVASGNTDLAVEWEMPDEAEGVGFVGAPRGGLSH 486
Query: 343 YLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VSAILGSL 387
++ G K ++ P +L A+E G +AD + + S
Sbjct: 487 WIKIKG-GKIENFQLVVPSTWNLGPRCNQNKMSAVEEALMGTPIADPKRPVEILRTVHSY 545
Query: 388 DIVFGE 393
D
Sbjct: 546 DPCIAC 551
Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 3/104 (2%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L++ +E++ V V L RG E +++ + A + R V A
Sbjct: 33 IEGHLKIEVEVENGKVSNV-WSSSQLFRGLEIILKGRDPRDAQHFTQRSCGVCTYTHALA 91
Query: 80 YALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
V+ +G++ +P +LIR L + H+++
Sbjct: 92 STRCVDNAVGVDKNLPENARLIRNLVLGAQYLHDHIVHFYHLHA 135
>gi|144900609|emb|CAM77473.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Magnetospirillum
gryphiswaldense MSR-1]
Length = 224
Score = 123 bits (310), Expect = 4e-26, Method: Composition-based stats.
Identities = 50/240 (20%), Positives = 81/240 (33%), Gaps = 33/240 (13%)
Query: 156 FRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGW 215
PGGV D+ + + L R GT++ A +
Sbjct: 17 CVPGGVQHDLDEPGRQRLAALLPRLRHGFKRAVALYEQTPSLLDRTTGTGTIQGTLAHRF 76
Query: 216 GFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQ 275
SG + R S + D R+ Y Y +LDF IP+ GD + R +R+ E+R S+ +I Q
Sbjct: 77 AVSGFVGRASSRSVDARRMPGYPPYDDLDFTIPVLAEGDVHARVQIRIEEVRASLSLIEQ 136
Query: 276 CVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEA 335
+ L G + + GE A VE+
Sbjct: 137 ILTGLPGGA---------------------------------FLTALPMRAGEGVALVES 163
Query: 336 PKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
+GE ++ K R P + +E +G+ +AD S + + D
Sbjct: 164 FRGEVAFWVRLSETGKVVRAHPHDPSWFQWPLLEAAIEGNIVADFPLCNKSFNCSYSGHD 223
>gi|283850498|ref|ZP_06367786.1| nickel-dependent hydrogenase large subunit [Desulfovibrio sp.
FW1012B]
gi|283574069|gb|EFC22041.1| nickel-dependent hydrogenase large subunit [Desulfovibrio sp.
FW1012B]
Length = 564
Score = 123 bits (310), Expect = 4e-26, Method: Composition-based stats.
Identities = 48/378 (12%), Positives = 91/378 (24%), Gaps = 83/378 (21%)
Query: 96 GQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAY 155
+++ + H +D+ A L + K G H +
Sbjct: 172 ATGQLGIFTNAYFLGGHKAYYLPPEVDLIATAHYLEALHLQVKAASAMAILGGKNPHTQF 231
Query: 156 FRPGGV------HQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVK- 208
GG +D + C I DLL +K G
Sbjct: 232 TVVGGCSNYQAMTKDPLANYLALTKEVCQFVNDV--YIPDLLAVAGFYKDWGGIGGCTNY 289
Query: 209 --------------LEDAWGWGFSGVM--------------IRGSGAAWDLRKS-----Q 235
A + +GV+ +
Sbjct: 290 MAFGEFASDESSPEKHMASSYFPAGVIMNRDLGKVDGVDLGAIYEDVKYSWYTPGADGLH 349
Query: 236 PYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDP- 294
PY+ ++ + K + + E + R + G+ + V
Sbjct: 350 PYDGVTDPKYTKLDDKDHYSWMKAPRYKGNAMEVGPLARTFIAYAKGQPEFKKVVDMVLG 409
Query: 295 KIVPPKRA----------------DMKRSMESLIHHFK--------LYTEGYHVPVGEVY 330
K+ P A + +ME+ I F L + +
Sbjct: 410 KLSVPATALHSTLGRTAARGIETAIVAANMETWIKEFADSSAKDNTLCAKWEMPDEAKGV 469
Query: 331 AAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLAD-- 379
V+AP+G ++ G K ++ P +L +E G +AD
Sbjct: 470 GLVDAPRGALSHWIRIKGK-KIDNFQLVVPSTWNLGPRGAKGDKSPVEEALIGTPIADPK 528
Query: 380 ----VSAILGSLDIVFGE 393
+ + + D
Sbjct: 529 RPVEILRTVHAFDPCIAC 546
Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats.
Identities = 20/102 (19%), Positives = 40/102 (39%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+++E++ V+ L RG E +++ + A + R V A
Sbjct: 24 IEGHLRIMVEVENGKVKDA-WSSSQLFRGLEIILKGRDPRDAQHFTQRACGVCTYVHALA 82
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
V+ + + IP +++R L + HL++
Sbjct: 83 STRCVDDAVKVNIPGNARMMRNLVMASQYLHDHLVHFYHLHA 124
>gi|312284553|gb|ADQ64089.1| bidirectional NAD(P) linked NiFe hydrogenase [uncultured
Methylococcaceae bacterium]
Length = 398
Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats.
Identities = 46/390 (11%), Positives = 106/390 (27%), Gaps = 63/390 (16%)
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEI---PIRGQLIRVLYSEIGRILSHLLNVTTQAMDV- 123
+ + P++ A A A+++L+GI+ P+ +R L + SH L+ +
Sbjct: 1 ICGICPVSHHLAAAKAIDQLVGIDPQNLPVSADKLRRLLHFGQVLQSHALHFFHLSSPDL 60
Query: 124 ------------------GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDI 165
+ G + R+ S R+H GG+++ +
Sbjct: 61 LFGFESDISKRSIIAVLGEYPELGVQGVKLRKYGQEVIRMVSDKRIHGTGAIAGGMNKSL 120
Query: 166 PPELVEDIGCWCDSFPSALNDISDLLTGNRI-FKQRNVNIGTVKLEDAWGWGFSGVMIRG 224
+ + D L+ + T++ G +
Sbjct: 121 TKAERDYLLEDIDQMIEWSAASVALIKKVHCSNLPYYDDFATIRSNYLGLIKPDGALELY 180
Query: 225 SGAAWDLRKSQ----PYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRL 280
G + Y + + I Y ++ + +E+ + R+
Sbjct: 181 HGGIRAKSDKGETIIDHVDYCKYNDYIHEEVRSWTYMKFPYLLSMGKENGWYRVGPLARV 240
Query: 281 LGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVG------------- 327
+ + A ++ +D +L H+ E H
Sbjct: 241 NNCDFINTPLAEAARVEFKAHSDEAMVHSTLAFHWTRLIETLHCAESIKILLNDPDIMGH 300
Query: 328 ----------EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK---- 373
E +EAP+G + D + + + ++ M +
Sbjct: 301 DLVAQGEKRYEGIGVIEAPRGTLFHHYQVDENDIVTKANLIVSTTSNNMGMNESVRQVAA 360
Query: 374 ----GHQLA-----DVSAILGSLDIVFGEV 394
G +L ++ + + D
Sbjct: 361 EYLSGRELTEPLLNNLEVAIRAYDPCLSCA 390
>gi|255589966|ref|XP_002535141.1| NADH-ubiquinone oxidoreductase fe-s protein, putative [Ricinus
communis]
gi|223523946|gb|EEF27247.1| NADH-ubiquinone oxidoreductase fe-s protein, putative [Ricinus
communis]
Length = 154
Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats.
Identities = 91/151 (60%), Positives = 113/151 (74%)
Query: 74 MNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGF 133
M QEHAY+ AVE+LL E+P+R Q IRVL+ EI RIL+H L +TT AMDVGA TP LW F
Sbjct: 1 MAQEHAYSSAVERLLNCEVPLRAQYIRVLFREITRILNHSLALTTHAMDVGAPTPFLWAF 60
Query: 134 EEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTG 193
EEREKL+ FYER SG+RMHA++ RPGGV QD+P L DI F S ++++ ++ TG
Sbjct: 61 EEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCRDIDSSTQQFASRIDELEEMSTG 120
Query: 194 NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRG 224
NRI+KQR V+IGTV + A WGFSGVM+RG
Sbjct: 121 NRIWKQRLVDIGTVTAQQAKDWGFSGVMLRG 151
>gi|219848660|ref|YP_002463093.1| NADH-ubiquinone oxidoreductase subunit 49kDa [Chloroflexus
aggregans DSM 9485]
gi|219542919|gb|ACL24657.1| NADH-ubiquinone oxidoreductase chain 49kDa [Chloroflexus aggregans
DSM 9485]
Length = 365
Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats.
Identities = 86/393 (21%), Positives = 144/393 (36%), Gaps = 66/393 (16%)
Query: 17 HPAAHGVLR---LILELDGEIVERVDPHIG-----LLHRGTEKLIET--KTFLQAVPYFD 66
HP A G L L ++GE + V+ R + E+ + Q PY
Sbjct: 8 HPVA-GAWHSEQLTLTVEGEYIRDVEYRPATGDGAYAQRLLQGGGESAVRAAAQVCPY-- 64
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
+ A +LA+E L I P+R Q IRV+ +E+ R SH+ + +G
Sbjct: 65 -----CSVAHTLALSLALEALAEITAPLRAQAIRVIVAELERAASHMNTLAALIAALGLN 119
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALND 186
+ E + AAY RPGG+ + + D + + +
Sbjct: 120 SATRLSQLETRIRSILLALLG--HHEAAYIRPGGLAEPPDEARLADTERAINELLPHMIE 177
Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
+++ R R V+IG + E A +G +G + R S D R PY Y+ L
Sbjct: 178 LAEQTIPRRTLVARMVDIGVLTTEAARQFGLAGPLGRASDITTDQRIDAPYAGYTVLTPA 237
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ + + GD + R +V ++E ES+++ + ++ L
Sbjct: 238 LVVEQGGDVHARAVVLLIEAIESLRLAVRWLHNLPIG----------------------- 274
Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKI-RAPGYAHL 365
+ YT + + +GE A VEAP+G + SDG + +I AP
Sbjct: 275 ---------ETYTA-FTLRLGEGTATVEAPRGPLRYTVRSDG-QRLTAVEIGIAP----- 318
Query: 366 QAMEFLCKGHQ-----LADVSAILGSLDIVFGE 393
++ L + D I S D
Sbjct: 319 -QLDRLLARTLLQNAAVDDTLLIAISTDPCTAC 350
>gi|118592881|ref|ZP_01550270.1| uptake hydrogenase [Stappia aggregata IAM 12614]
gi|118434651|gb|EAV41303.1| uptake hydrogenase [Stappia aggregata IAM 12614]
Length = 339
Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats.
Identities = 45/312 (14%), Positives = 69/312 (22%), Gaps = 51/312 (16%)
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+ A+ F ER ER +G + F
Sbjct: 39 ARLAAVLAAFRAFLERHLYGDKLERIAG-----------LSSAQELWAWAAEKPAPSSDF 87
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGS-------------GA 227
L L + E GV G
Sbjct: 88 RRFLQYAHSLDLASLGPSAGRYMSFGSYQEGGAWMFQPGVFTNGETRLLDPALITEDLSH 147
Query: 228 AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVG 287
AW P + + + + E + RQ V+ +
Sbjct: 148 AWYAAPDGPQTPLAGETRPDADRTDAYSWCKAPRLGGRVMEVGALARQLVDGHPMIRDLV 207
Query: 288 PVSASDPKIVPPKRA--------DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGE 339
VS + R M+R L+ G+ E EA +G
Sbjct: 208 SVSGGNVFTRVVARVTEIALVVMAMERWAADLVPEQPFIVHGHMPDEAEGIGLTEAARGS 267
Query: 340 FGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKG--------HQLADVSA 382
G +L + +I AP + A+E G +A V
Sbjct: 268 LGHWLRV-EKGRIANYQIIAPTTWNFSPRDENGVPGALEQALAGAPVRVGESEPVA-VQH 325
Query: 383 ILGSLDIVFGEV 394
I+ S D
Sbjct: 326 IVRSFDPCLVCT 337
>gi|225465160|ref|XP_002273426.1| PREDICTED: similar to NADH dehydrogenase subunit 7 [Vitis vinifera]
Length = 238
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 90/155 (58%), Positives = 114/155 (73%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
YV+ M QEHA++ AVE+LL E+P+R Q IRVL+ EI RI +H L +TT AMDVGA TP
Sbjct: 81 YVSTMAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRISNHSLALTTHAMDVGASTPS 140
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
LW EEREKL+ FYER SG+RMHA++ RPGGV QD+P L DI F S ++++ +
Sbjct: 141 LWASEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCRDIDSSTQQFASRIDELEE 200
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRG 224
+ TGNRI+KQR V+IGTV + A WGFSGVM+RG
Sbjct: 201 MSTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRG 235
>gi|46580331|ref|YP_011139.1| periplasmic [NiFe] hydrogenase large subunit, isozyme 1
[Desulfovibrio vulgaris str. Hildenborough]
gi|46449748|gb|AAS96398.1| periplasmic [NiFe] hydrogenase, large subunit, isozyme 1
[Desulfovibrio vulgaris str. Hildenborough]
gi|311233690|gb|ADP86544.1| nickel-dependent hydrogenase large subunit [Desulfovibrio vulgaris
RCH1]
Length = 566
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 48/357 (13%), Positives = 84/357 (23%), Gaps = 77/357 (21%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H +D+ A L + K H + GGV +
Sbjct: 194 HPAYYLEPELDLIATAHYLEALRLQVKAARAMAVFGAKNPHTQFTVVGGVTC-YDALTPK 252
Query: 172 DIGCWCDSFPSALN-----DISDLLTGNRIFKQRNVNIG--------------------- 205
I + D + I DLL +K G
Sbjct: 253 RIQEFTDLWKETKAFVDEVYIPDLLAVASRYKDWTQYGGTTNFITFGEFPKDEYDLNSRF 312
Query: 206 ----TVKLEDAWGWGFSGVMIRGSGAAWDLRK----SQPYECYSELDFDIPIGKHGDCYD 257
V D M + P++ +E + G+ +
Sbjct: 313 FKPGAVFKRDFQNIKPFDPMQIREHVRHSWYEGAEARHPWKGATEPKYTDLHGEDRYSWM 372
Query: 258 RYLVRMMEMRESVKIIRQCVNRL-------------LGKNKVGPVSASDPKIVPPKR--- 301
+ M + E+ + + V LG VGP + R
Sbjct: 373 KAPRYMDDPMETGPLAQVLVAYAQGHKQVKAVTDTVLGALGVGPEALFSTLGRTAARGIE 432
Query: 302 -----ADMKRSMESLIHHF-----KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNK 351
A M++ + + K+ E V AP+G ++ +
Sbjct: 433 TAVIAAQMEQWLNEYKDNIASGDNKIVEPWEMPKQAEGVGFVTAPRGGLSHWIRI-EDGR 491
Query: 352 PYRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
++ P L +E G +AD + + S D
Sbjct: 492 IGNFQLVVPSTWTLGPRCANNKPSPVEEALVGTPVADAKRPVEILRTVHSFDPCIAC 548
Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats.
Identities = 22/105 (20%), Positives = 39/105 (37%), Gaps = 1/105 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E++ V+R L RG E +++ + A + R V A
Sbjct: 32 IEGHLRIEVEVENGKVKRA-YSSSTLFRGLEIILKGRDPRDAQHFTQRTCGVCTYTHALA 90
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
V+ +G+ IP IR L + H+++
Sbjct: 91 STRCVDNAVGVHIPKNATYIRNLVLGAQYLHDHIVHFYHLHALDF 135
>gi|260060803|ref|YP_003193883.1| putative cytochrome C3-like [NiFe] hydrogenase large subunit
[Robiginitalea biformata HTCC2501]
gi|88784933|gb|EAR16102.1| putative cytochrome C3-like [NiFe] hydrogenase large subunit
[Robiginitalea biformata HTCC2501]
Length = 624
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 57/516 (11%), Positives = 109/516 (21%), Gaps = 166/516 (32%)
Query: 44 LLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLY 103
L RG E +++ + A R V ALA+E LGI+ P G ++R +
Sbjct: 86 TLFRGYEVILKGRDPRDAAYISSRACGVCGGVHATTAALAIEMALGIKPPPLGIVMRNIL 145
Query: 104 SEIGRILS---HLLNVTTQAMD-------------------------VGALT-------- 127
I + HL + G T
Sbjct: 146 LAIEYLYDHPLHLFLLAGPDYSEELVRETNPELLDKAANTKAKNKEVHGYDTILDIMKDL 205
Query: 128 ------PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
L Y G H PGG+ + ++ ++ F
Sbjct: 206 NPLKGKLYLEALSMTRVAREAYVLIGGKYPHPQSVVPGGLSVTVNITVLNEVYSRLIKFF 265
Query: 182 SA-------LNDISDLLTG----------------------------------NRIFKQR 200
+D+ D ++ + R
Sbjct: 266 DYSQKVTGIWDDVFDFFLESNPEYAKCGIRPATMMDTGVWDRPEHYDASFENCDKWGEAR 325
Query: 201 NVNIGTV-------------------KLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
G + +E ++ + G + L + P+ +
Sbjct: 326 WSTPGVLVDGEVVTTKLTELNAGIEEFVEHSYYEKWDGHRFKEDANGMPLSPNHPWNKET 385
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCV------------------------ 277
K +D E+ R +
Sbjct: 386 IPKPGKQSWKDRYSWDTAPTWDRMPMEAGAYTRMYLTAKAQKAPASRFLENTGTSMKIHV 445
Query: 278 ---------------NRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGY 322
+ + P + +M+ + + + Y
Sbjct: 446 PKHYLPEKTLEWKIPEHWNAFERNRARAYCIPYSAMVAMENWLLAMDLIKNGETKVSVPY 505
Query: 323 HVPVG---EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEF 370
+P + A A +G +LI +I P + + E
Sbjct: 506 EIPKKGTHIGFGAWGAGRGFLTHHLIV-ENGVIDNYQIITPSTLNAAPRTPWGEMGPYEE 564
Query: 371 LCKGHQLA------------DVSAILGSLDIVFGEV 394
+ D+ + S D
Sbjct: 565 AVLNTPILEKFDNPEDYKGIDILRAIRSFDPCMPCT 600
>gi|332704231|ref|ZP_08424319.1| Cytochrome-c3 hydrogenase [Desulfovibrio africanus str. Walvis Bay]
gi|332554380|gb|EGJ51424.1| Cytochrome-c3 hydrogenase [Desulfovibrio africanus str. Walvis Bay]
Length = 569
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 45/368 (12%), Positives = 89/368 (24%), Gaps = 77/368 (20%)
Query: 102 LYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGV 161
+++ + H +++ A L + K H + GGV
Sbjct: 185 IFTNAYFLGGHDAYYLPPEVNLIATAHYLEALHLQVKAARAMAIFGAKNPHTQFTIVGGV 244
Query: 162 HQDI---PPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIG------------- 205
P + I W ++ L + + IG
Sbjct: 245 TCYDSLKPENVQAFIDLWRETKQFVDEVYIPDLLAVASYYKDWAGIGGTTNFLAFGEFPK 304
Query: 206 ---------------TVKLEDAWGWGFSGVMIRGSGAAWDLRKS----QPYECYSELDFD 246
+ D + + PY+ +E +
Sbjct: 305 PGGEFDLSSRYLPPGVILKRDLANVKNFEPREIMEHVSHSWYQGNEALHPYKGKTEPKYT 364
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKV-------------GPVSASD 293
K + + M E E + + V G+ +V GP +
Sbjct: 365 SLEDKDRYSWMKAPRYMGESMEVGPLAQMLVAYGKGQPEVKKTVDMVLERLGVGPEALFS 424
Query: 294 PKIVPPKR--------ADMKRSMESLIH-----HFKLYTEGYHVPVGEVYAAVEAPKGEF 340
R A+M+ + L K+ E + V AP+G
Sbjct: 425 TLGRTAARGIETAVIAAEMENWVNQLQENVSKGDTKIAQEWKMPKSAQGVGYVNAPRGAL 484
Query: 341 GVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLAD------VSAILG 385
+++ K ++ P + L +E G +AD + +
Sbjct: 485 SHWIVI-EDGKIKNFQLVVPSTWNLGPRCAGGKLGPVEEALIGTPVADPKRPVELLRTVH 543
Query: 386 SLDIVFGE 393
+ D
Sbjct: 544 AFDPCIAC 551
Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ V+ G L RG E +++ + A + R V A
Sbjct: 33 IEGHLRIECEVENGKVKNA-WSSGQLFRGLEIILKGRDPRDAQHFTQRACGVCTYVHALA 91
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
V+ + + IP +IR L + H+++
Sbjct: 92 STRCVDHAVKVNIPHNATIIRNLVMGSQFLHDHIVHFYHLHA 133
>gi|255589958|ref|XP_002535137.1| NADH-ubiquinone oxidoreductase fe-s protein, putative [Ricinus
communis]
gi|223523942|gb|EEF27243.1| NADH-ubiquinone oxidoreductase fe-s protein, putative [Ricinus
communis]
Length = 96
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 55/85 (64%), Positives = 66/85 (77%)
Query: 312 IHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFL 371
IHHF+LYTEG+ VP Y AVEAPKGEFGV+L+S+G N+PYR KIRAPG AH Q ++ +
Sbjct: 12 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSM 71
Query: 372 CKGHQLADVSAILGSLDIVFGEVDR 396
K H ADV I+G+ DIVFGEVDR
Sbjct: 72 SKHHMPADVVTIIGTQDIVFGEVDR 96
>gi|258404404|ref|YP_003197146.1| nickel-dependent hydrogenase large subunit [Desulfohalobium
retbaense DSM 5692]
gi|257796631|gb|ACV67568.1| periplasmic [NiFe] hydrogenase, large subunit [Desulfohalobium
retbaense DSM 5692]
Length = 566
Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats.
Identities = 46/366 (12%), Positives = 86/366 (23%), Gaps = 75/366 (20%)
Query: 102 LYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGV 161
+++ + H +++ A L + K H + GGV
Sbjct: 184 IFTNAYFLGGHEAYYLPPEVNLIATAHYLEALRLQVKAARAMAVFGAKNPHTQFTVVGGV 243
Query: 162 HQDI--PPELVEDIGCWCDSFPSALNDIS--DLLTGNRIFKQRNVNIGTVKLEDAWGWGF 217
PE + + + + + DLL +K G +G
Sbjct: 244 TCYNSLTPERISEFKSLYEETRKFVEECYIPDLLAVAGYYKDWGSIGGCTNFLSFGEFGN 303
Query: 218 SG-------------------------VMIRGSGAAWDLRKS----QPYECYSELDFDIP 248
K PYE +E +
Sbjct: 304 DDYSMADNYIPQGVIMNRNLGQVTDFDPNAIAEHVKHSWYKDGPAKHPYEGVTEPQYTSL 363
Query: 249 IGKHGDCYDRYLVRMMEMRESVKIIR-------------QCVNRLLGKNKVGPVSASDPK 295
K + + E E + + V+ + G+ VG +
Sbjct: 364 EDKDRYSWMKAPRYQGEAMEVGPLAHVLVAYARGHKDTVEAVDYVCGQLGVGKEALFSTL 423
Query: 296 IVPPKRAD--------MKRSMESLIHH-----FKLYTEGYHVPVGEVYAAVEAPKGEFGV 342
R M+ + L + LYT E V AP+G
Sbjct: 424 GRTAARGIETLVTARKMETWINQLAENVSSGNNDLYTPWEMPNEAEGVGFVNAPRGGLSH 483
Query: 343 YLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLAD------VSAILGSL 387
++ K ++ P + L +E G + D + + +
Sbjct: 484 WVRIK-NKKIENFQLVVPSTWNLGPRCGANKLGPVEEALMGTPVVDPERPVEILRTVHAF 542
Query: 388 DIVFGE 393
D
Sbjct: 543 DPCIAC 548
Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E+D V V L RG E +++ + A + R V A
Sbjct: 32 IEGHLRVEVEVDNGKVSNV-WSSSQLFRGLETILKGRDPRDAQHFTQRSCGVCTYVHALA 90
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
V+ +G++IP L+R L + H+++
Sbjct: 91 STRCVDNAVGVKIPENAHLVRNLVLSAQYLHDHIVHFYHLHA 132
>gi|330993942|ref|ZP_08317872.1| NADH-quinone oxidoreductase subunit D [Gluconacetobacter sp.
SXCC-1]
gi|329758888|gb|EGG75402.1| NADH-quinone oxidoreductase subunit D [Gluconacetobacter sp.
SXCC-1]
Length = 483
Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats.
Identities = 80/382 (20%), Positives = 115/382 (30%), Gaps = 50/382 (13%)
Query: 14 GPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAP 73
GP H L L L L GE + +V P +G HRG + T R+D A
Sbjct: 151 GPAEGGFHAPLHLRLGLPGEGITQVRPRMGYAHRGLCARMRGNTLAGGARLAARIDAGAT 210
Query: 74 MNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGF 133
+ + A+A AV G++ + E+ R+ +HL +V A
Sbjct: 211 VAHQLAFARAVAAASGVDTSCPLAIFPA---ELERVATHLDSVAQMAELQADGRLANLAA 267
Query: 134 EEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTG 193
E + G R+ + + + L
Sbjct: 268 TLLEHVRQLGHAVYGHRLLFDVV--------PRRDAAAPAPEMMAALHEGCATLRRLFWR 319
Query: 194 NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHG 253
R + + G + A WG G + R SG DLR P Y+ P G
Sbjct: 320 PRGLATQLLGRGVLSAGAARQWGIGGCVGRASGIEADLRAQDP--AYAPGWLTPPPRSEG 377
Query: 254 DCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIH 313
D R R+ E+ ESV+I+ G PV A
Sbjct: 378 DMTARLSTRLHELGESVRILGNA-----GVMPDPPVPAQCV------------------- 413
Query: 314 HFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK 373
GE E P G +L + P A +QA+ +
Sbjct: 414 ------------DGEGLGMAEGPAGPVWHWLRV-EDGRIAAWWCGDPSLAQIQALPAILH 460
Query: 374 GHQLADVSAILGSLDIVFGEVD 395
G DV IL SL + D
Sbjct: 461 GAVYEDVEPILTSLGLSAAGAD 482
>gi|120602291|ref|YP_966691.1| nickel-dependent hydrogenase, large subunit [Desulfovibrio vulgaris
DP4]
gi|120562520|gb|ABM28264.1| nickel-dependent hydrogenase, large subunit [Desulfovibrio vulgaris
DP4]
Length = 566
Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats.
Identities = 49/357 (13%), Positives = 84/357 (23%), Gaps = 77/357 (21%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H +D+ A L + K H + GGV +
Sbjct: 194 HPAYYLEPELDLIATAHYLEALRLQVKAARAMAVFGAKNPHTQFTVVGGVTC-YDALTPK 252
Query: 172 DIGCWCDSFPSALN-----DISDLLTGNRIFKQRNVNIG--------------------- 205
I + D + I DLL +K G
Sbjct: 253 RIQEFTDLWKETKAFVDEVYIPDLLAVASRYKDWTQYGGTTNFITFGEFPKDEYDLNSRF 312
Query: 206 ----TVKLEDAWGWGFSGVMIRGSGAAWDLRK----SQPYECYSELDFDIPIGKHGDCYD 257
V D M + P++ +E + G+ +
Sbjct: 313 FRPGAVFKRDIQNIKPFDPMQIREHVRHSWYEGAEARHPWKGATEPKYTDLHGEDRYSWM 372
Query: 258 RYLVRMMEMRESVKIIRQCVNRL-------------LGKNKVGPVSASDPKIVPPKR--- 301
+ M E E+ + + V LG VGP + R
Sbjct: 373 KAPRYMDEPMETGPLAQVLVAYAQGHKQVKAVTDTVLGALGVGPEALFSTLGRTAARGIE 432
Query: 302 -----ADMKRSMESLIHHF-----KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNK 351
A M++ + + K+ E V AP+G ++ +
Sbjct: 433 TAVIAAQMEQWLNEYKDNIASGDNKIVEPWEMPKQAEGVGFVTAPRGGLSHWIRI-EDGR 491
Query: 352 PYRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
++ P L +E G +AD + + S D
Sbjct: 492 IGNFQLVVPSTWTLGPRCANNKPSPVEEALVGTPVADAKRPVEILRTVHSFDPCIAC 548
Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats.
Identities = 22/105 (20%), Positives = 39/105 (37%), Gaps = 1/105 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E++ V+R L RG E +++ + A + R V A
Sbjct: 32 IEGHLRIEVEVENGKVKRA-YSSSTLFRGLEIILKGRDPRDAQHFTQRTCGVCTYTHALA 90
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
V+ +G+ IP IR L + H+++
Sbjct: 91 STRCVDNAVGVHIPKNATYIRNLVLGAQYLHDHIVHFYHLHALDF 135
>gi|239906198|ref|YP_002952937.1| NiFe hydrogenase large subunit [Desulfovibrio magneticus RS-1]
gi|239796062|dbj|BAH75051.1| NiFe hydrogenase large subunit [Desulfovibrio magneticus RS-1]
Length = 564
Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats.
Identities = 43/371 (11%), Positives = 92/371 (24%), Gaps = 81/371 (21%)
Query: 102 LYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGV 161
+++ + H +D+ A L + K G H + GG
Sbjct: 178 IFTNAYFLGGHKAYYLPPEVDLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGG- 236
Query: 162 HQDIPPELVEDIGCWC----DSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF 217
+ + + + + + L F + IG A+G
Sbjct: 237 CSNYNAMSKDALANYLSLTQEVCKFVNDVYIPDLLAVAGFYKDWGGIGGCTNYMAFGEFA 296
Query: 218 S----------------GVM--------------IRGSGAAWDLRKS-----QPYECYSE 242
+ GV+ + K PY+ ++
Sbjct: 297 TDESTPEKHMESSFFPAGVIMNRDLGKVDKVDLGAIYEDVKYSWYKPGADGLHPYDGVTD 356
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDP-KIVPPKR 301
+ K + + + E + R + G+ + + + K+ P
Sbjct: 357 PKYTKLDDKDHYSWMKAPRYKGKAMEVGPLARCFLAYAKGQPEFKKIIDTVLTKLSVPAT 416
Query: 302 A----------------DMKRSMESLIHHFK--------LYTEGYHVPVGEVYAAVEAPK 337
A + ME+ I F L + + +AP+
Sbjct: 417 ALHSTLGRTAARGIETAIVAAKMETWIKEFADSSAKDNTLCAKWEMPGESKGVGLCDAPR 476
Query: 338 GEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VSA 382
G ++ K ++ P +L +E G +AD +
Sbjct: 477 GALSHWIRIK-DKKIDNFQLVVPSTWNLGPRGAAGDKSPVEEALIGTPIADPKRPVEILR 535
Query: 383 ILGSLDIVFGE 393
+ + D
Sbjct: 536 TVHAFDPCIAC 546
Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats.
Identities = 20/102 (19%), Positives = 40/102 (39%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+++E++ V+ L RG E +++ + A + R V A
Sbjct: 24 IEGHLRIMVEVENGKVKDA-WSSSQLFRGLEIILKGRDPRDAQHFTQRACGVCTYVHGLA 82
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
V+ + + IP +++R L + HL++
Sbjct: 83 STRCVDDAVKVNIPANARMMRNLVMASQYLHDHLVHFYHLHA 124
>gi|313672064|ref|YP_004050175.1| nickel-dependent hydrogenase large subunit [Calditerrivibrio
nitroreducens DSM 19672]
gi|312938820|gb|ADR18012.1| nickel-dependent hydrogenase large subunit [Calditerrivibrio
nitroreducens DSM 19672]
Length = 570
Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats.
Identities = 50/396 (12%), Positives = 94/396 (23%), Gaps = 101/396 (25%)
Query: 98 LIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFR 157
L H ++ A+ L +++++ + H F
Sbjct: 160 KTGRLGPFGNAYWGHPAYKLPPEANLMAVAHYLEALNLQKEIIKVHAILGSKNPHPQTFL 219
Query: 158 PGGVHQDIPP----ELVEDIGCWCDSFPSALND-----ISDLLTGNRIFKQRNVNIGTVK 208
GG+ + P L D + + + + + F IGT
Sbjct: 220 VGGMSIPVDPTSQNALNADKIAMINKYFAMAKEFVEQVYIPDVLAVAPFYLEWAKIGTGH 279
Query: 209 LEDAWG--------------WGFSGVMIRGS--------------GAAWDLRKS------ 234
W SGV++ G +
Sbjct: 280 KNYLSYGEFPEGQNGFPNDLWFSSGVILNGDLSKVLPVAQEKITEYVTHSWYEYTGGDDK 339
Query: 235 --QPYECYSELDFDIPIGKH-------GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNK 285
PYE + P + + + + E + R V G +
Sbjct: 340 AKHPYEGEQIWKYTGPKPPYEYLETDKKYSWVKAPRYDDKSMEVGPLARMLVGYAKGHKE 399
Query: 286 VGP--------------------------------VSASDPKIVPPKRADMKRSMESLIH 313
+ V PK V A++K + IH
Sbjct: 400 IKETVDAVLKKLGVGPEVLFSTLGRTAARAIETLIVVNRLPKWVGMLVANIKTGDLA-IH 458
Query: 314 HFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA------ 367
+ + + + + Y EAP+G G +++ K + P +
Sbjct: 459 NGEKWDPEHWPQTAKGYGWHEAPRGALGHWIVI-EDKKIKNYQAVVPSTWNASPRDAKGV 517
Query: 368 ---MEFLCKGHQLAD------VSAILGSLDIVFGEV 394
E G +AD + + S D
Sbjct: 518 RGQYEESLIGTPIADPKKPLEILRTIHSFDPCLACA 553
Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ ++ + + RG E++++ + A + R V A
Sbjct: 13 IEGHLRIEAVVENGKITDA-WSSSTMFRGVERILQGRDPRDAWYFTQRFCGVCTTVHSIA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE L I+IP ++IR L I + H+++
Sbjct: 72 SIRAVENALNIKIPFNAEMIRNLIIGIQLVQDHVIHFYHLHA 113
>gi|312111092|ref|YP_003989408.1| nickel-dependent hydrogenase large subunit [Geobacillus sp.
Y4.1MC1]
gi|311216193|gb|ADP74797.1| nickel-dependent hydrogenase large subunit [Geobacillus sp.
Y4.1MC1]
Length = 573
Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats.
Identities = 42/395 (10%), Positives = 89/395 (22%), Gaps = 101/395 (25%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H +++ A+ L + +++++ + G H Y G
Sbjct: 163 GQLGIFANGYWGHKAYKLPPEVNLLAVAHYLEALDWQKEIVKIHTIFGGKNPHPHYVVGG 222
Query: 160 GVHQD--------IPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLED 211
L+ ++ L + + G +
Sbjct: 223 MATPIDINSDNAVHAERLMHVSQIIDEAMEFVHKVYIPDLLAIASYYKDWTYGGGLNNYL 282
Query: 212 AWGWGFSGVMIRGSGAAW--------------DLRKSQPYECYSELDFDIPIGK------ 251
+G +G + + D+ P + +D
Sbjct: 283 CYGDFSTGDISDVKLYRFPRGAILNGNFHEVLDVDLKDPEQVKEFIDHSWYTYNGKEGSI 342
Query: 252 --------------------------HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNK 285
+ + E+ + R V L + +
Sbjct: 343 GKHPWGGETSLRYTGPKPPFKTLNTDEKYSWIKSPRWKEHPMETGPLARMLVGYALKREE 402
Query: 286 VGPVSASDPKIVPPKRADM---------------------KRSMESLIHHFK-------- 316
+ K + M + M++L+ + K
Sbjct: 403 FVRLIDDTLKKLNWPFEAMQSALGRTIARGLESILVVQWMRDDMDALLANIKNGDLITFD 462
Query: 317 --LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------L 365
+ + VEAP+G G ++ K + P + +
Sbjct: 463 RTKWEPETWPKKAKGVGWVEAPRGSLGHWIEI-EDGKTKNYQAVVPTTWNASPRDHKNQI 521
Query: 366 QAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
A E KG L D + I+ S D
Sbjct: 522 GAYEASLKGTPLLDKEKPLEILRIIHSFDPCLACA 556
Score = 96.2 bits (238), Expect = 8e-18, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 41/104 (39%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +++D + + + G RG E ++ + Y R+ V A
Sbjct: 13 IEGHLRIEVDVDEKGIIQDAFSSGTAVRGIELIVRDRDPRDVWAYVQRICGVCTTTHALA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+VE L I+IP LIR + + + H+++
Sbjct: 73 SIRSVEDALEIKIPKNAHLIRNIMNGAVFLHDHVVHFYHLHAFD 116
>gi|295400381|ref|ZP_06810360.1| nickel-dependent hydrogenase large subunit [Geobacillus
thermoglucosidasius C56-YS93]
gi|294977656|gb|EFG53255.1| nickel-dependent hydrogenase large subunit [Geobacillus
thermoglucosidasius C56-YS93]
Length = 573
Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats.
Identities = 42/395 (10%), Positives = 89/395 (22%), Gaps = 101/395 (25%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H +++ A+ L + +++++ + G H Y G
Sbjct: 163 GQLGIFANGYWGHKAYKLPPEVNLLAVAHYLEALDWQKEIVKIHTIFGGKNPHPHYVVGG 222
Query: 160 GVHQD--------IPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLED 211
L+ ++ L + + G +
Sbjct: 223 MATPIDINSDNAVHAERLMHVSQIIDEAMEFVHKVYIPDLLAIASYYKDWTYGGGLNNYL 282
Query: 212 AWGWGFSGVMIRGSGAAW--------------DLRKSQPYECYSELDFDIPIGK------ 251
+G +G + + D+ P + +D
Sbjct: 283 CYGDFSTGDISDVKLYRFPRGAILNGNFHEVLDVDLKDPEQVKEFIDHSWYTYDGKEGSI 342
Query: 252 --------------------------HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNK 285
+ + E+ + R V L + +
Sbjct: 343 GKHPWGGETSLRYTGPKPPFKTLNTDEKYSWIKSPRWKEHPMETGPLARMLVGYALKREE 402
Query: 286 VGPVSASDPKIVPPKRADM---------------------KRSMESLIHHFK-------- 316
+ K + M + M++L+ + K
Sbjct: 403 FVRLIDDTLKKLNWPFEAMQSALGRTIARGLESILVVQWMRDDMDALLANIKNGDLITFD 462
Query: 317 --LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------L 365
+ + VEAP+G G ++ K + P + +
Sbjct: 463 RTKWEPETWPKKAKGVGWVEAPRGSLGHWIEI-EDGKTKNYQAVVPTTWNASPRDHKNQI 521
Query: 366 QAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
A E KG L D + I+ S D
Sbjct: 522 GAYEASLKGTPLLDKEKPLEILRIIHSFDPCLACA 556
Score = 99.6 bits (247), Expect = 7e-19, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 42/104 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +++DG+ + + G RG E ++ + Y R+ V A
Sbjct: 13 IEGHLRIEVDVDGKGIIQDAFSSGTAVRGIELIVRDRDPRDVWAYVQRICGVCTTTHALA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+VE L I+IP LIR + + + H+++
Sbjct: 73 SIRSVEDALEIKIPKNAHLIRNIMNGAVFLHDHVVHFYHLHAFD 116
>gi|303327068|ref|ZP_07357510.1| periplasmic [NiFe] hydrogenase, large subunit, isozyme 1
[Desulfovibrio sp. 3_1_syn3]
gi|302863056|gb|EFL85988.1| periplasmic [NiFe] hydrogenase, large subunit, isozyme 1
[Desulfovibrio sp. 3_1_syn3]
Length = 560
Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats.
Identities = 46/358 (12%), Positives = 86/358 (24%), Gaps = 75/358 (20%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDI--PPEL 169
H + +++ A L + + H + GGV PE
Sbjct: 186 HPAYTLSPELNLIATADYLQALRVQVEAARAMAVFGAKNPHTQFTVGGGVTCYDALTPER 245
Query: 170 VEDIGCWCDSFPSALNDIS--DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG-------- 219
+++ + + + DLL +K+ GT + G
Sbjct: 246 IKEFKEQYKKTRAFIENYYIPDLLAVAANYKECATYGGTHNFMAFGEFPAPGGERDLQKR 305
Query: 220 -------------------VMIRGSGAAWDLRKSQ----PYECYSELDFDIPIGKHGDCY 256
+ PY+ ++ F +
Sbjct: 306 WLKPGVILDRKIGNPQGFDPSKIEEHVRHSWYEGDKALPPYQGETKPAFTSMGDTDRYSW 365
Query: 257 DRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPK--------------------- 295
+ E+ + + V V P+ + K
Sbjct: 366 LKAPRYDGISMETGPLAQVLVAYTQNHKTVKPLVDNVLKTLNVGPEALFSTLGRTAARGI 425
Query: 296 ---IVPPKRADMKRSMESLIHHFKLYTEGYHVPV-GEVYAAVEAPKGEFGVYLISDGGNK 351
+ + E I K E Y P + V AP+G +L +D K
Sbjct: 426 ETLAIAQQIETWLNEYEDNITKDKQIVENYDAPKDAKGVGFVNAPRGGLSHWLRTDADAK 485
Query: 352 PYRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
++ P +L A E G +AD + ++ S D
Sbjct: 486 IANFQLVVPTTWNLGPRDGKNVPGAAEEALAGTPVADPKRPVEILRVIHSFDPCIACA 543
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 1/105 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E++ ++ G L RG E +++ + A + R V A
Sbjct: 24 IEGHLRIEVEVEKGKIKEAR-SCGTLFRGLELILKGRDPRDAQHFTQRTCGVCTYTHALA 82
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
A+E + IP +R L + + HL++
Sbjct: 83 STRALEDAINKPIPANATYLRNLVLGMQFLHDHLVHFYALHALDF 127
>gi|66361173|pdb|1YRQ|H Chain H, Structure Of The Ready Oxidized Form Of [nife]-Hydrogenase
gi|66361175|pdb|1YRQ|I Chain I, Structure Of The Ready Oxidized Form Of [nife]-Hydrogenase
gi|66361177|pdb|1YRQ|J Chain J, Structure Of The Ready Oxidized Form Of [nife]-Hydrogenase
gi|66361179|pdb|1YRQ|K Chain K, Structure Of The Ready Oxidized Form Of [nife]-Hydrogenase
gi|66361181|pdb|1YRQ|M Chain M, Structure Of The Ready Oxidized Form Of [nife]-Hydrogenase
gi|66361183|pdb|1YRQ|N Chain N, Structure Of The Ready Oxidized Form Of [nife]-Hydrogenase
Length = 549
Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats.
Identities = 45/372 (12%), Positives = 90/372 (24%), Gaps = 83/372 (22%)
Query: 102 LYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGV 161
+++ + H +++ A L + K G H + GG
Sbjct: 178 IFTNAYFLGGHKAYYLPPEVNLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGC 237
Query: 162 ------HQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVK------- 208
+D + C I DLL +K GT
Sbjct: 238 SNYQGLTKDPLANYLALSKEVCQFVNEC--YIPDLLAVAGFYKDWGGIGGTSNYLAFGEF 295
Query: 209 --------LEDAWGWGFSGVM--------------IRGSGAAWDLRKS-----QPYECYS 241
A SGV+ + PY+ +
Sbjct: 296 ATDDSSPSKHLATSQFPSGVITGRDLGKVDNVDLGAIYEDVKYSWYAPGGDGKHPYDGVT 355
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDP-KIVPPK 300
+ + K + + + E + R + G+ V K+ P
Sbjct: 356 DPKYTKLDDKDHYSWMKAPRYKGKAMEVGPLARTFIAYAKGQPDFKKVVDMVLGKLSVPA 415
Query: 301 --------------------RADMKRSMESLIH----HFKLYTEGYHVPVGEVYAAVEAP 336
A+M++ ++ + L + + +AP
Sbjct: 416 TALHSTLGRTAARGIETAIVCANMEKWIKEMADSGAKDNTLCAKWEMPEESKGVGLADAP 475
Query: 337 KGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VS 381
+G ++ G K ++ P +L +E G +AD +
Sbjct: 476 RGALSHWIRIKGK-KIDNFQLVVPSTWNLGPRGAQGDKSPVEEALIGTPIADPKRPVEIL 534
Query: 382 AILGSLDIVFGE 393
+ + D
Sbjct: 535 RTVHAFDPCIAC 546
Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats.
Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+++E++ V+ L RG E +++ + A + R V A
Sbjct: 24 IEGHLRIMVEVENGKVKDA-WSSSQLFRGLEIILKGRDPRDAQHFTQRACGVCTYVHALA 82
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+ V+ + + IP +++R L + HL++
Sbjct: 83 SSRCVDDAVKVSIPANARMMRNLVMASQYLHDHLVHFYHLHA 124
>gi|212704478|ref|ZP_03312606.1| hypothetical protein DESPIG_02534 [Desulfovibrio piger ATCC 29098]
gi|212672045|gb|EEB32528.1| hypothetical protein DESPIG_02534 [Desulfovibrio piger ATCC 29098]
Length = 561
Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats.
Identities = 45/360 (12%), Positives = 84/360 (23%), Gaps = 78/360 (21%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDI--PPEL 169
H ++ A L + H + PGGV PE
Sbjct: 186 HPAYYLDPEANLVATAHYLEALRVQVSAAKAMAVFGAKNPHPQFLIPGGVTCYESLTPER 245
Query: 170 VEDIGCWCDSFPSALNDIS--DLLTGNRIFKQRNV-NIGTVKLEDAWGWGFSG------- 219
+++ + ++ DLL +K G + G
Sbjct: 246 IKEFRDLYLQARKFIEEVYIPDLLLVAGAYKDWAALGCGCRNFMAFGEFPEVGGERDITK 305
Query: 220 --------------------VMIRGSGAAWDLRKSQ----PYECYSELDFDIPIGKHGDC 255
+ + PY+ ++ F
Sbjct: 306 RWLKPGVLLDGKLDTVHPFDAGKIAEHVRHSWYEGEEARAPYDGETKPAFTRMGDTDRYS 365
Query: 256 YDRYLVRMMEMRESVKIIRQ-------------CVNRLLGKNKVGPV-----------SA 291
+ + E+ + + V+++L VGP
Sbjct: 366 WLKAPRYDGLAMETGPLAQMLVSYAQGHEAVKPAVDKVLAALGVGPEALFSTLGRTAARG 425
Query: 292 SDPKIVPPKRADMKRSMESLIHHF--KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGG 349
+ ++ + E+ I K+ E G V AP+G +L
Sbjct: 426 VETLVIAQQVEKWLAEYEANIAGGDKKIAMECSVPKEGRGVGFVNAPRGGLSHWLRI-ED 484
Query: 350 NKPYRCKIRAPGYAH---------LQAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
K ++ P + L A E G +AD + + S D
Sbjct: 485 GKIGNFQLVVPTTWNLGPRDAKHVLSAAEQALVGTPVADPKRPVEILRTIHSFDPCIACA 544
Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats.
Identities = 21/105 (20%), Positives = 42/105 (40%), Gaps = 1/105 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E++ ++ G L+RG E +++ + A + R V A
Sbjct: 24 IEGHLRIEVEVENGRIKDAR-SCGTLYRGLEVILKGRDPRDAQHFTQRTCGVCTYTHALA 82
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
A+E +G+ +P IR L + + H+++
Sbjct: 83 STRALEDAMGLTLPANATYIRNLVLGLLFMHDHMVHFYHLHALDF 127
>gi|213581187|ref|ZP_03363013.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Typhi str. E98-0664]
Length = 91
Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 52/91 (57%)
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
+ +E+LI HF + G +P E + VEA KG YL SDG YR ++R P +AHL
Sbjct: 1 QHIETLITHFLQVSWGPVMPAQESFQMVEATKGINSYYLTSDGSTMSYRTRVRTPSFAHL 60
Query: 366 QAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
Q + +G ++D+ LGS+D V +VDR
Sbjct: 61 QQIPSAIRGSLVSDLIVYLGSIDFVMSDVDR 91
>gi|218780119|ref|YP_002431437.1| nickel-dependent hydrogenase large subunit [Desulfatibacillum
alkenivorans AK-01]
gi|218761503|gb|ACL03969.1| Periplasmic (NiFe) hydrogenase, large subunit [Desulfatibacillum
alkenivorans AK-01]
Length = 546
Score = 119 bits (298), Expect = 8e-25, Method: Composition-based stats.
Identities = 46/369 (12%), Positives = 85/369 (23%), Gaps = 75/369 (20%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H + D+ A++ + + + + H G
Sbjct: 162 GQLGPFANAYWGHPAYKLSPEADLMAVSHYIEALRVQARAAKLHAIFGAKNPHLQSLVAG 221
Query: 160 GVHQD---IPPELVEDIGCWCDSFPSALNDIS-DLLTGNRIFKQRNVNIGTVKLEDAWGW 215
GV P + E W ++ N D+L +K GT +
Sbjct: 222 GVTCAADLKPDRVAEFKYLWKETQEFVKNVYIPDVLAVASFYKDWGAIGGTSNYLAYGDF 281
Query: 216 GFSGVMIRGS-------------------------GAAWDLRKS----QPYECYSELDFD 246
+G A + PY+ +E ++
Sbjct: 282 PQTGEGSSSDLMPGGTIFRRKLSDVKKMDEDKITEHVARSWYEGKKDLHPYKGVTEPNYT 341
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA---- 302
+ + + + E + R V G V + +
Sbjct: 342 DYDREDRYSWIKAPRYDGKSMEVGPLSRVLVAYGKGDPGVKKLVDDTLAHLSVPADVLFS 401
Query: 303 -----------------DMKRSMESLIH-----HFKLYTEGYHVPVGEVYAAVEAPKGEF 340
M+ + L+ YT G + P+G
Sbjct: 402 TLGRTAARALETVFIGNAMETWLNELVGNLTKGDDSTYTPWEMPDKGMGRGLNDVPRGAL 461
Query: 341 GVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VSAILG 385
G ++ D K + P +L +E G +AD V +
Sbjct: 462 GHWIEID-KGKIKNYQYVVPSTWNLGPRDAKGQIGPVEEALIGTPIADPKRPVEVLRTVH 520
Query: 386 SLDIVFGEV 394
S D
Sbjct: 521 SFDPCIACA 529
Score = 112 bits (281), Expect = 8e-23, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E++ IV+ G + RG E +++ + A + R V +
Sbjct: 13 IEGHLRIEVEVENGIVKDA-WSSGQMFRGIEIILQGRDPRDAPLFVQRSCGVCTYVHYLS 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A+E +GI+IP ++IR L H+++
Sbjct: 72 SVEAIEDAVGIKIPDNARIIRNLLHGAQFQHDHIVHFYHLHA 113
>gi|303249236|ref|ZP_07335471.1| nickel-dependent hydrogenase large subunit [Desulfovibrio
fructosovorans JJ]
gi|205831250|sp|P18188|PHNL_DESFR RecName: Full=Periplasmic [NiFe] hydrogenase large subunit;
AltName: Full=NiFe hydrogenlyase large chain; Flags:
Precursor
gi|186883006|gb|AAA23372.2| HynB [Desulfovibrio fructosovorans JJ]
gi|302489347|gb|EFL49300.1| nickel-dependent hydrogenase large subunit [Desulfovibrio
fructosovorans JJ]
Length = 564
Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats.
Identities = 46/372 (12%), Positives = 90/372 (24%), Gaps = 83/372 (22%)
Query: 102 LYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGV 161
+++ + H +D+ A L + K G H + GG
Sbjct: 178 IFTNAYFLGGHKAYYLPPEVDLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGC 237
Query: 162 ------HQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVK------- 208
+D + C I DLL +K GT
Sbjct: 238 SNYQGLTKDPLANYLALSKEVCQFVNEC--YIPDLLAVAGFYKDWGGIGGTSNYLAFGEF 295
Query: 209 --------LEDAWGWGFSGVM--------------IRGSGAAWDLRKS-----QPYECYS 241
A SGV+ + PY+ +
Sbjct: 296 ATDDSSPEKHLATSQFPSGVITGRDLGKVDNVDLGAIYEDVKYSWYAPGGDGKHPYDGVT 355
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDP-KIVPPK 300
+ + K + + + E + R + G+ V K+ P
Sbjct: 356 DPKYTKLDDKDHYSWMKAPRYKGKAMEVGPLARTFIAYAKGQPDFKKVVDMVLGKLSVPA 415
Query: 301 --------------------RADMKRSMESLIH----HFKLYTEGYHVPVGEVYAAVEAP 336
A+M++ ++ + L + + +AP
Sbjct: 416 TALHSTLGRTAARGIETAIVCANMEKWIKEMADSGAKDNTLCAKWEMPEESKGVGLADAP 475
Query: 337 KGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VS 381
+G ++ G K ++ P +L +E G +AD +
Sbjct: 476 RGALSHWIRIKGK-KIDNFQLVVPSTWNLGPRGAQGDKSPVEEALIGTPIADPKRPVEIL 534
Query: 382 AILGSLDIVFGE 393
+ + D
Sbjct: 535 RTVHAFDPCIAC 546
Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats.
Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+++E++ V+ L RG E +++ + A + R V A
Sbjct: 24 IEGHLRIMVEVENGKVKDA-WSSSQLFRGLEIILKGRDPRDAQHFTQRACGVCTYVHALA 82
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+ V+ + + IP +++R L + HL++
Sbjct: 83 SSRCVDDAVKVSIPANARMMRNLVMASQYLHDHLVHFYHLHA 124
>gi|9838442|ref|NP_064056.1| orf155b [Beta vulgaris subsp. vulgaris]
gi|323435035|ref|YP_004222250.1| hypothetical protein BevumaM_p011 [Beta vulgaris subsp. maritima]
gi|9087304|dbj|BAA99448.1| orf155b [Beta vulgaris subsp. vulgaris]
gi|317905688|emb|CBJ14081.1| hypothetical protein [Beta vulgaris subsp. maritima]
gi|319439768|emb|CBJ17490.1| hypothetical protein [Beta vulgaris subsp. maritima]
gi|320147998|emb|CBJ20664.1| hypothetical protein [Beta vulgaris subsp. maritima]
Length = 155
Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats.
Identities = 89/152 (58%), Positives = 112/152 (73%)
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWG 132
M QEHA++ AVE+LL E+P+R Q IRVL+ EI RI +H L +TT AMDVGALTP LW
Sbjct: 1 MMAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRISNHSLALTTHAMDVGALTPFLWA 60
Query: 133 FEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLT 192
FEEREKL+ FYER G+RMHA++ RPGGV QD+P L DI F S ++++ ++ T
Sbjct: 61 FEEREKLLEFYERVPGARMHASFIRPGGVAQDLPLGLCRDIDSSTQQFASRIDELEEMST 120
Query: 193 GNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRG 224
GNRI+KQR V+IGTV + A WGFSGVM+RG
Sbjct: 121 GNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRG 152
>gi|254574956|pdb|3H3X|Q Chain Q, Structure Of The V74m Large Subunit Mutant Of Ni-Fe
Hydrogenase In An Oxidized State
gi|254574958|pdb|3H3X|R Chain R, Structure Of The V74m Large Subunit Mutant Of Ni-Fe
Hydrogenase In An Oxidized State
gi|254574960|pdb|3H3X|S Chain S, Structure Of The V74m Large Subunit Mutant Of Ni-Fe
Hydrogenase In An Oxidized State
Length = 549
Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats.
Identities = 46/372 (12%), Positives = 90/372 (24%), Gaps = 83/372 (22%)
Query: 102 LYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGV 161
+++ + H +D+ A L + K G H + GG
Sbjct: 178 IFTNAYFLGGHKAYYLPPEVDLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGC 237
Query: 162 ------HQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVK------- 208
+D + C I DLL +K GT
Sbjct: 238 SNYQGLTKDPLANYLALSKEVCQFVNEC--YIPDLLAVAGFYKDWGGIGGTSNYLAFGEF 295
Query: 209 --------LEDAWGWGFSGVM--------------IRGSGAAWDLRKS-----QPYECYS 241
A SGV+ + PY+ +
Sbjct: 296 ATDDSSPEKHLATSQFPSGVITGRDLGKVDNVDLGAIYEDVKYSWYAPGGDGKHPYDGVT 355
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDP-KIVPPK 300
+ + K + + + E + R + G+ V K+ P
Sbjct: 356 DPKYTKLDDKDHYSWMKAPRYKGKAMEVGPLARTFIAYAKGQPDFKKVVDMVLGKLSVPA 415
Query: 301 --------------------RADMKRSMESLIH----HFKLYTEGYHVPVGEVYAAVEAP 336
A+M++ ++ + L + + +AP
Sbjct: 416 TALHSTLGRTAARGIETAIVCANMEKWIKEMADSGAKDNTLCAKWEMPEESKGVGLADAP 475
Query: 337 KGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VS 381
+G ++ G K ++ P +L +E G +AD +
Sbjct: 476 RGALSHWIRIKGK-KIDNFQLVVPSTWNLGPRGAQGDKSPVEEALIGTPIADPKRPVEIL 534
Query: 382 AILGSLDIVFGE 393
+ + D
Sbjct: 535 RTVHAFDPCIAC 546
Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats.
Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+++E++ V+ L RG E +++ + A + R + A
Sbjct: 24 IEGHLRIMVEVENGKVKDA-WSSSQLFRGLEIILKGRDPRDAQHFTQRACGMCTYVHALA 82
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+ V+ + + IP +++R L + HL++
Sbjct: 83 SSRCVDDAVKVSIPANARMMRNLVMASQYLHDHLVHFYHLHA 124
>gi|6730012|pdb|1FRF|L Chain L, Crystal Structure Of The Ni-Fe Hydrogenase From
Desulfovibrio Fructosovorans
Length = 564
Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats.
Identities = 45/372 (12%), Positives = 90/372 (24%), Gaps = 83/372 (22%)
Query: 102 LYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGV 161
+++ + H +++ A L + K G H + GG
Sbjct: 178 IFTNAYFLGGHKAYYLPPEVNLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGC 237
Query: 162 ------HQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVK------- 208
+D + C I DLL +K GT
Sbjct: 238 SNYQGLTKDPLANYLALSKEVCQFVNEC--YIPDLLAVAGFYKDWGGIGGTSNYLAFGEF 295
Query: 209 --------LEDAWGWGFSGVM--------------IRGSGAAWDLRKS-----QPYECYS 241
A SGV+ + PY+ +
Sbjct: 296 ATDDSSPEKHLATSQFPSGVITGRDLGKVDNVDLGAIYEDVKYSWYAPGGDGKHPYDGVT 355
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDP-KIVPPK 300
+ + K + + + E + R + G+ V K+ P
Sbjct: 356 DPKYTKLDDKDHYSWMKAPRYKGKAMEVGPLARTFIAYAKGQPDFKKVVDMVLGKLSVPA 415
Query: 301 --------------------RADMKRSMESLIH----HFKLYTEGYHVPVGEVYAAVEAP 336
A+M++ ++ + L + + +AP
Sbjct: 416 TALHSTLGRTAARGIETAIVCANMEKWIKEMADSGAKDNTLCAKWEMPEESKGVGLADAP 475
Query: 337 KGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VS 381
+G ++ G K ++ P +L +E G +AD +
Sbjct: 476 RGSLSHWIRIKGK-KIDNFQLVVPSTWNLGPRGPQGDKSPVEEALIGTPIADPKRPVEIL 534
Query: 382 AILGSLDIVFGE 393
+ + D
Sbjct: 535 RTVHAFDPCIAC 546
Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats.
Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+++E++ V+ L RG E +++ + A + R V A
Sbjct: 24 IEGHLRIMVEVENGKVKDA-WSSSQLFRGLEIILKGRDPRDAQHFTQRACGVCTYVHALA 82
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+ V+ + + IP +++R L + HL++
Sbjct: 83 SSRCVDDAVKVSIPANARMMRNLVMASQYLHDHLVHFYHLHA 124
>gi|322420603|ref|YP_004199826.1| cytochrome-c3 hydrogenase [Geobacter sp. M18]
gi|320126990|gb|ADW14550.1| Cytochrome-c3 hydrogenase [Geobacter sp. M18]
Length = 559
Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats.
Identities = 45/371 (12%), Positives = 88/371 (23%), Gaps = 89/371 (23%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGV-HQDIPPELV 170
H + +++ A+T L + + K G H GGV +
Sbjct: 173 HPAMKLSPEVNLMAVTHYLKALDYQRKASQATAILGGKNPHIQNLVVGGVATAINTENIA 232
Query: 171 EDIGCWCDSFPSALND---------ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS--- 218
S + + DLL +K V A
Sbjct: 233 TLNMERLMYLRSLMEETRDFVQKVYYPDLLAIAGSYKDWFKYGAGVTNYMAVPEFPEDTR 292
Query: 219 --------GVMIRGSGAAWDLRKSQ-------------------------PYECYSELDF 245
GV++ G + K P++ ++ D+
Sbjct: 293 NTKFGLPGGVVMGGDIGGIRMVKDHRDDYLIKNIKENVTHAWYEGNGTLHPWDGETKPDY 352
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKV------------------- 286
+ + + + + G KV
Sbjct: 353 TDFKENGKYSWCKAPTLDGKPVQVGPPAQIMAAYAAGNPKVKKLVDGAVSTLGISLKDIH 412
Query: 287 ---GPVSASDPKIVPPK---RADMKRSMESLIHHFKLYTEGYHVPVGE--VYAAVEAPKG 338
G + + ++ + + ++ + Y +P GE EAP+G
Sbjct: 413 STMGRLYCRGARAHVMADLSLENLDKLIANIASGDQTYANHTVIPKGEYRGVGFHEAPRG 472
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLAD------VSAI 383
+++ K + P + L E G+ +AD V
Sbjct: 473 TLSHWIVIK-NKKIENYQAVVPSTWNAAPRNDKGELGPYEASLVGNPIADASKPLEVLRT 531
Query: 384 LGSLDIVFGEV 394
+ S D
Sbjct: 532 VHSFDPCIACA 542
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E +G V + RG E +++ + A + R V +
Sbjct: 12 IEGHLRIDVEANGGKVTNA-WSSAQMWRGIEVILKGRAPEDAWSFVQRFCGVCTTVHAIS 70
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE L +E+P+ Q IR + + H+++ +
Sbjct: 71 SIRAVEHALDVEVPLNAQYIRNIMIAQHSVQDHIVHFYHLSA 112
>gi|195927486|pdb|3CUR|H Chain H, Structure Of A Double Methionine Mutant Of Ni-Fe
Hydrogenase
gi|195927488|pdb|3CUR|I Chain I, Structure Of A Double Methionine Mutant Of Ni-Fe
Hydrogenase
gi|195927490|pdb|3CUR|J Chain J, Structure Of A Double Methionine Mutant Of Ni-Fe
Hydrogenase
Length = 549
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 46/372 (12%), Positives = 90/372 (24%), Gaps = 83/372 (22%)
Query: 102 LYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGV 161
+++ + H +D+ A L + K G H + GG
Sbjct: 178 IFTNAYFLGGHKAYYLPPEVDLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGC 237
Query: 162 ------HQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVK------- 208
+D + C I DLL +K GT
Sbjct: 238 SNYQGLTKDPLANYLALSKEVCQFVNEC--YIPDLLAVAGFYKDWGGIGGTSNYLAFGEF 295
Query: 209 --------LEDAWGWGFSGVM--------------IRGSGAAWDLRKS-----QPYECYS 241
A SGV+ + PY+ +
Sbjct: 296 ATDDSSPEKHLATSQFPSGVITGRDLGKVDNVDLGAIYEDVKYSWYAPGGDGKHPYDGVT 355
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDP-KIVPPK 300
+ + K + + + E + R + G+ V K+ P
Sbjct: 356 DPKYTKLDDKDHYSWMKAPRYKGKAMEVGPLARTFIAYAKGQPDFKKVVDMVLGKLSVPA 415
Query: 301 --------------------RADMKRSMESLIH----HFKLYTEGYHVPVGEVYAAVEAP 336
A+M++ ++ + L + + +AP
Sbjct: 416 TALHSTLGRTAARGIETAIVCANMEKWIKEMADSGAKDNTLCAKWEMPEESKGVGLADAP 475
Query: 337 KGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VS 381
+G ++ G K ++ P +L +E G +AD +
Sbjct: 476 RGALSHWIRIKGK-KIDNFQLVVPSTWNLGPRGAQGDKSPVEEALIGTPIADPKRPVEIL 534
Query: 382 AILGSLDIVFGE 393
+ + D
Sbjct: 535 RTVHAFDPCIAC 546
Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats.
Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+++E++ V+ L RG E +++ + A + R + A
Sbjct: 24 IEGHLRIMVEVENGKVKDA-WSSSQLFRGLEIILKGRDPRDAQHFTQRACGMCTYVHALA 82
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+ V+ + + IP +++R L + HL++
Sbjct: 83 SSRCVDDAVKVSIPANARMMRNLVMASQYLHDHLVHFYHMHA 124
>gi|14017619|ref|NP_114304.1| NADH dehydrogenase subunit 1 [Triticum aestivum]
gi|13928252|dbj|BAB47081.1| NADH dehydrogenase 49kDa subunit [Triticum aestivum]
Length = 247
Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 45/71 (63%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
Query: 64 YFDRLDYVAPM 74
Y R + + +
Sbjct: 66 YVTRSNSSSTV 76
>gi|296415314|ref|XP_002837335.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295633199|emb|CAZ81526.1| unnamed protein product [Tuber melanosporum]
Length = 145
Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats.
Identities = 53/67 (79%), Positives = 61/67 (91%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+K R +T+NFGPQHPAAHGVLRLILEL+GE + R DPH+GLLHRGTEKLIE KT+LQA+P
Sbjct: 78 RKMRHYTVNFGPQHPAAHGVLRLILELNGEEIIRADPHVGLLHRGTEKLIEYKTYLQALP 137
Query: 64 YFDRLDY 70
YFDRLDY
Sbjct: 138 YFDRLDY 144
>gi|148262625|ref|YP_001229331.1| nickel-dependent hydrogenase, large subunit [Geobacter
uraniireducens Rf4]
gi|146396125|gb|ABQ24758.1| nickel-dependent hydrogenase, large subunit [Geobacter
uraniireducens Rf4]
Length = 566
Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats.
Identities = 54/391 (13%), Positives = 96/391 (24%), Gaps = 98/391 (25%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H ++ A L E ++ ++ + H F G
Sbjct: 161 GRLGPFANAYWGHPAYRLPPEANLMATAHYLEALEWQKDVIKIHAILGSKNPHPQTFLVG 220
Query: 160 GVHQDIPPE-----------LVEDIGCWCDSFPSALNDISDLLTGNRIFKQR---NVNIG 205
G+ I P+ ++ + F + I DLL +K+ +G
Sbjct: 221 GMAIAIDPDSQNALNADKLMEIKRLLAKAREFVEKV-YIPDLLAVASFYKEWAGIGGGVG 279
Query: 206 TVKLEDAWGWGFSGVMIRGSG---------------------AAWDLRKS--------QP 236
+ SG + SG + P
Sbjct: 280 NFLSYGDFPQPGSGQLWMPSGAIMGKDLSKVIPVSHEKVTEYVDHSWYEYSGGAGKGLHP 339
Query: 237 YECYSELDFDIPIGKHG-------DCYDRYLVRMMEMRESVKIIRQ-------------C 276
+E SE + P + + + E + R
Sbjct: 340 WEGESEHKYSGPKPPFKNLDTDGKYSWVKAPRYEDQPMEVGPLARLLVAYASGHKEVKGA 399
Query: 277 VNRLLGKNKVGPVSASDPKIVPPKRA--------DMKRSMESLI----------HHFKLY 318
V+ +L K VGP + R + + ++ LI H+ + +
Sbjct: 400 VDGVLHKLGVGPEALFSTLGRTAARGIDCLLIAQETPKWLDQLIDNIGKGDYKVHNNEKW 459
Query: 319 TEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AME 369
Y EAP+G G ++ K + P + E
Sbjct: 460 DPATWPAEAAGYGWHEAPRGALGHWIKIK-DQKILNYQAVVPSTWNASPRDAKGLRGPYE 518
Query: 370 FLCKGHQLAD------VSAILGSLDIVFGEV 394
G LAD + + S D
Sbjct: 519 AALVGTPLADPNKPLEILRTIHSFDPCLACA 549
Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ V + RG EK+++T+ A + R V A
Sbjct: 12 IEGHLRIEAEVNNGKVSDA-WSSSTMFRGIEKILKTRDPRDAWFFTQRFCGVCTTVHSIA 70
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE L I+IP +LIR + I + H+++
Sbjct: 71 SIRAVENALNIKIPANAELIRNIIIGIQNVQDHVIHFYHLHA 112
>gi|193216359|ref|YP_001997558.1| nickel-dependent hydrogenase large subunit [Chloroherpeton
thalassium ATCC 35110]
gi|193089836|gb|ACF15111.1| nickel-dependent hydrogenase large subunit [Chloroherpeton
thalassium ATCC 35110]
Length = 573
Score = 116 bits (292), Expect = 5e-24, Method: Composition-based stats.
Identities = 45/383 (11%), Positives = 90/383 (23%), Gaps = 101/383 (26%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H +++ + L E +++++ + G H Y G P +
Sbjct: 175 HSAYKLPPEVNLIGVAHYLEALEFQKEIVKIHTIFGGKNPHPNYVVGGMACAIDPNKDTA 234
Query: 172 DIGCWCDSFPSALNDIS---------DLLTGNRIFKQRNVNIGTVKL------------- 209
+ ++D DL+ +K G
Sbjct: 235 INIERLNLVKKIIDDTITFIDQVYIPDLIAIAGFYKGWLYGGGLGNYLAYGDFPETTIDD 294
Query: 210 --------------------------------EDAWGWGFSGVMIRGSGAAWDLRKSQPY 237
E+ ++ G +++P
Sbjct: 295 TASLLWPRGAILNKDLSTVYDDVDPKDLAQITEEVSHSWYTYANGDEKGLHPWQGETKPK 354
Query: 238 ECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCV-------------NRLLGKN 284
+ ++ H + + E + R + N +L
Sbjct: 355 FTGPQPPYEFLNTDHKYSWLKTPRWKDHPMEVGPLARVLIQYAKKDSMIVDTVNYVLNTL 414
Query: 285 KVGPVSASDPKIVPPKRADMKRSMESLIHHF------------------KLYTEGYHVPV 326
VGP + R + + HF +L+T
Sbjct: 415 NVGPEALFSTLGRTAARGIEAKQTAGFMLHFYNQLIENVKNGDYRTFNSELWTPERWPQD 474
Query: 327 GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQL 377
+ + EAP+G G ++ K +I P + A E KG +
Sbjct: 475 CKGFGYTEAPRGALGHWIHIK-DQKIADYQIVVPSTWNASPRDNKGRSGAYEAALKGTPM 533
Query: 378 AD------VSAILGSLDIVFGEV 394
AD + + S D
Sbjct: 534 ADPEKPLEILRTVHSFDPCLACA 556
Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 3/112 (2%)
Query: 11 INFGPQHPAAHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
I P P G LR+ LD ++ G + RG E +++ + A + +R+
Sbjct: 5 IAVDPI-PRIEGHLRIEAVLDDKNQIQEA-FSSGTMWRGLEIILQGRDPRDAWAFTERIC 62
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
V A VE LGI+IP ++IR L + + HL++
Sbjct: 63 GVCTTVHALASVRCVEDALGIQIPPNARIIRNLMNATQQTQDHLVHFYHLHA 114
>gi|296040747|gb|ADG85341.1| NADH dehydrogenase subunit 7 [Silene vulgaris]
Length = 139
Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats.
Identities = 84/139 (60%), Positives = 106/139 (76%)
Query: 78 HAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEERE 137
HAY+LAVE+L E+P+R Q IRVL+ EI RIL+HLL +TT AMDVGALTP LW FEERE
Sbjct: 1 HAYSLAVERLFNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMDVGALTPFLWAFEERE 60
Query: 138 KLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIF 197
KL+ FYER SG+RMHA++ RPGGV QD+P L DI + F S ++++ ++LTGNRI+
Sbjct: 61 KLLEFYERVSGARMHASFIRPGGVAQDLPLGLCRDIDSFTQQFASRIDELEEMLTGNRIW 120
Query: 198 KQRNVNIGTVKLEDAWGWG 216
KQR V+IGTV + A WG
Sbjct: 121 KQRLVDIGTVTAQQAKDWG 139
>gi|291278509|ref|YP_003495344.1| Ni-Fe hydrogenase large subunit [Deferribacter desulfuricans SSM1]
gi|290753211|dbj|BAI79588.1| Ni-Fe hydrogenase, large subunit [Deferribacter desulfuricans SSM1]
Length = 570
Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats.
Identities = 46/395 (11%), Positives = 92/395 (23%), Gaps = 99/395 (25%)
Query: 98 LIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFR 157
L H ++ A+ L +++++ + H F
Sbjct: 160 KTGRLGPFGNAYWGHPAYKLPPEANLMAVAHYLEALHLQKEIIKIHAILGSKNPHPQTFL 219
Query: 158 PGGVHQDIPPE----LVEDIGCWCDSFPSALND-----ISDLLTGNRIFKQRNVNIGTVK 208
GG+ + P L D F + + L F +IG
Sbjct: 220 VGGMSVPVDPNSQNALNADRIAQIKEFVNMAKEFVEQVYIPDLLAVAQFYPEWASIGAGV 279
Query: 209 L--------------EDAWGWGFSGVMIRGS--------------GAAWDLRKS------ 234
W SG+++ +
Sbjct: 280 KNFLSYGEYPEDQSGYPNGLWIPSGIVLNADISKVLEVDQKKITEYVTHSWYEYTGGDDK 339
Query: 235 --QPYECYSEL-------DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQ---------- 275
P++ + ++ + + + + E + R
Sbjct: 340 GKHPFDGETNWKYTGPKPPYEYLDVDNKYSWVKAPRYDDKPMEVGPLARMVVGYAKGHKE 399
Query: 276 ---CVNRLLGKNKVGP--------------VSASDPKIVPPKRADMK----RSMESLIHH 314
V+ L K GP + PK DM +S + +H+
Sbjct: 400 IKDAVDWALKKLGAGPEVLFSTLGRTAARGIETLITVNRLPKWIDMLVANIKSGDLSVHN 459
Query: 315 FKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL--------- 365
+ + Y EAP+G G +++ + + P +
Sbjct: 460 GEKWDPETWPSKAAGYGWHEAPRGALGHWIVI-ENKQIKNYQAVVPSTWNAGPRDAKGQR 518
Query: 366 QAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
E G +AD + + S D
Sbjct: 519 GPYEESLIGTPIADPDKPLEILRTIHSFDPCLACA 553
Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +++ + + RG EK+++ + A + R V A
Sbjct: 13 IEGHLRIEAKVENGKIVDA-WSSSTMFRGVEKILQGRDPRDAWYFTQRFCGVCTTVHSIA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI+IP ++IR + I + H+++
Sbjct: 72 SIRAVENALGIKIPFNAEMIRNIIIGIQNVQDHVIHFYHLHA 113
>gi|197119507|ref|YP_002139934.1| [NiFe]-hydrogenase large subunit [Geobacter bemidjiensis Bem]
gi|197088867|gb|ACH40138.1| periplasmically oriented, membrane-bound [NiFe]-hydrogenase large
subunit [Geobacter bemidjiensis Bem]
Length = 559
Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats.
Identities = 42/371 (11%), Positives = 87/371 (23%), Gaps = 89/371 (23%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H + +++ A+ L + + K G H GGV I E +
Sbjct: 173 HPAMKLSPEVNLMAVAHYLKALDYQRKASQATAILGGKNPHIQNLVVGGVATAINTENIA 232
Query: 172 DIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMI--------- 222
+ + L + + + G K +G G + M
Sbjct: 233 TLNMERLIYLRTLMEETRDFVQKVYYPDLLAIAGAYKDWFKYGAGVTNYMAVPEFPEDTK 292
Query: 223 ---------------------------------RGSGAAWDLRKS----QPYECYSELDF 245
+ P+E ++ D+
Sbjct: 293 NGKFSLPGGVVMAGNIAGIRPVKDHRDEYLIKNIKENVTHAWYEGNGTLHPWEGETKPDY 352
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKV------------------- 286
+ + + + + G KV
Sbjct: 353 TDFKENGKYSWCKAPTLDGKPVQVGPPAQIMAAYAAGNPKVKKLVDGAVSTLGLSMKDIH 412
Query: 287 ---GPVSASDPK---IVPPKRADMKRSMESLIHHFKLYTEGYHVPVGE--VYAAVEAPKG 338
G + + + ++ + + ++ + Y +P GE EAP+G
Sbjct: 413 STMGRLYCRGARAHIMADIALENLDKLIANIATGDQTYANHTEIPKGEYRGVGFHEAPRG 472
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLAD------VSAI 383
+++ K + P + L E G+ +AD V
Sbjct: 473 TLSHWIVIK-DKKIENYQAVVPSTWNAAPRNDKGELGPYEASLVGNPIADSSKPLEVLRT 531
Query: 384 LGSLDIVFGEV 394
+ S D
Sbjct: 532 IHSFDPCIACA 542
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E +G V + RG E +++ + A + R V +
Sbjct: 12 IEGHLRIDVEANGGKVTNA-WSSAQMWRGIEVILKGRAPEDAWSFVQRFCGVCTTVHAIS 70
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE L +E+P+ Q IR + + H+++ +
Sbjct: 71 SIRAVEHALNVEVPLNAQYIRNIMIAQHSVQDHIVHFYHLSA 112
>gi|296040745|gb|ADG85340.1| NADH dehydrogenase subunit 7 [Silene paradoxa]
Length = 139
Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats.
Identities = 84/139 (60%), Positives = 106/139 (76%)
Query: 78 HAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEERE 137
HAY+LAVE+LL E+P+R Q IRVL+ EI RIL+HLL +TT AMDVGALTP LW FEERE
Sbjct: 1 HAYSLAVERLLNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMDVGALTPFLWAFEERE 60
Query: 138 KLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIF 197
KL+ FYER SG+RMHA++ RPGGV QD+P L DI + F S ++++ ++LT NRI+
Sbjct: 61 KLLEFYERVSGARMHASFIRPGGVAQDLPLGLCRDIDSFTQQFASRIDELEEMLTSNRIW 120
Query: 198 KQRNVNIGTVKLEDAWGWG 216
KQR V+IGTV + A WG
Sbjct: 121 KQRLVDIGTVTAQQAKDWG 139
>gi|71909581|ref|YP_287168.1| nickel-dependent hydrogenase, large subunit [Dechloromonas
aromatica RCB]
gi|71849202|gb|AAZ48698.1| Nickel-dependent hydrogenase, large subunit [Dechloromonas
aromatica RCB]
Length = 570
Score = 116 bits (291), Expect = 7e-24, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E+DG V++ G + RG E ++ + A R+ V A
Sbjct: 13 IEGHLRVDVEVDGGRVKKA-WASGQMWRGVENILIGRDPRDAWAITQRICGVCTTVHAMA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE L +EIP+ Q IR + + H+++ +
Sbjct: 72 SVRAVENALQLEIPVNAQYIRNMIMLAHAVHDHIVHFYHLSA 113
Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats.
Identities = 22/209 (10%), Positives = 50/209 (23%), Gaps = 51/209 (24%)
Query: 235 QPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIR-----------------QCV 277
PY+ + ++ + + + + + R +
Sbjct: 347 HPYKGETTPNYTDFQDDGKYSWLKSPTFYGKPMQVGPLPRVLNMLAAGHEPTKKYATAAL 406
Query: 278 N--------RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEG-------Y 322
+ ++ + + + V + + +G
Sbjct: 407 DLVSSVAGTKVGVEALHSTIGRHAARAVGCA-VQVDELINQWDLLLANMAKGDLKTFNRP 465
Query: 323 HVPVGE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFL 371
P GE EAP+G +++ D K + P + A E
Sbjct: 466 VFPKGEQMGVGFHEAPRGVLSHWVVID-SGKIKNYQCVVPTTWNAAPRNEKDQPGAYEAC 524
Query: 372 CKGHQLAD------VSAILGSLDIVFGEV 394
+ +AD V + S D
Sbjct: 525 LIDNPVADPEKPLEVLRTVHSFDPCLACA 553
>gi|153003396|ref|YP_001377721.1| nickel-dependent hydrogenase large subunit [Anaeromyxobacter sp.
Fw109-5]
gi|152026969|gb|ABS24737.1| nickel-dependent hydrogenase large subunit [Anaeromyxobacter sp.
Fw109-5]
Length = 578
Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats.
Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 2/131 (1%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E+DG V+ G + RG E +++ + A + R+ V A
Sbjct: 13 IEGHLRIDVEVDGGAVKNA-WSSGTMWRGIETILQGRDPRDAWVFTQRICGVCTTVHAIA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKL 139
+VE LG+EIP+ QLIR + + H+++ + + + + EK
Sbjct: 72 SVRSVENALGLEIPLNAQLIRNVIMSAHSLHDHIVHFYALSA-LDWVDVVAALKADPEKA 130
Query: 140 MVFYERASGSR 150
+
Sbjct: 131 ADLADSLGLQW 141
Score = 94.6 bits (234), Expect = 3e-17, Method: Composition-based stats.
Identities = 16/119 (13%), Positives = 30/119 (25%), Gaps = 22/119 (18%)
Query: 298 PPKRADMKRSMESLIHHF--KLYTEGYHVPVG--EVYAAVEAPKGEFGVYLISDGGN--- 350
K +E++ ++ G EAP+G + + +
Sbjct: 443 ELALKHWKLLIENIGKGDTAIFVDPMKNLKPGTYRGVGFHEAPRGTLSHWAVIETDGKEM 502
Query: 351 KPYRCKIRAPGYAH---------LQAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
K + P + L E G+ +AD + S D
Sbjct: 503 KLANYQAVVPSTWNAGPRDAKDQLGPYEKSLVGNPIADPKLPLEALRTIHSFDPCLACA 561
>gi|66361157|pdb|1YQW|Q Chain Q, Structure Of The Oxidized Unready Form Of Ni-Fe
Hydrogenase
gi|66361159|pdb|1YQW|R Chain R, Structure Of The Oxidized Unready Form Of Ni-Fe
Hydrogenase
gi|66361161|pdb|1YQW|S Chain S, Structure Of The Oxidized Unready Form Of Ni-Fe
Hydrogenase
Length = 549
Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats.
Identities = 45/372 (12%), Positives = 90/372 (24%), Gaps = 83/372 (22%)
Query: 102 LYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGV 161
+++ + H +++ A L + K G H + GG
Sbjct: 178 IFTNAYFLGGHKAYYLPPEVNLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGC 237
Query: 162 ------HQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVK------- 208
+D + C I DLL +K GT
Sbjct: 238 SNYQGLTKDPLANYLALSKEVCQFVNEC--YIPDLLAVAGFYKDWGGIGGTSNYLAFGEF 295
Query: 209 --------LEDAWGWGFSGVM--------------IRGSGAAWDLRKS-----QPYECYS 241
A SGV+ + PY+ +
Sbjct: 296 ATDDSSPSKHLATSQFPSGVITGRDLGKVDNVDLGAIYEDVKYSWYAPGGDGKHPYDGVT 355
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDP-KIVPPK 300
+ + K + + + E + R + G+ V K+ P
Sbjct: 356 DPKYTKLDDKDHYSWMKAPRYKGKAMEVGPLARTFIAYAKGQPDFKKVVDMVLGKLSVPA 415
Query: 301 --------------------RADMKRSMESLIH----HFKLYTEGYHVPVGEVYAAVEAP 336
A+M++ ++ + L + + +AP
Sbjct: 416 TALHSTLGRTAARGIETAIVCANMEKWIKEMADSGAKDNTLCAKWEMPEESKGVGLADAP 475
Query: 337 KGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VS 381
+G ++ G K ++ P +L +E G +AD +
Sbjct: 476 RGALSHWIRIKGK-KIDNFQLVVPATWNLGPRGAQGDKSPVEEALIGTPIADPKRPVEIL 534
Query: 382 AILGSLDIVFGE 393
+ + D
Sbjct: 535 RTVHAFDPCIAC 546
Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats.
Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+++E++ V+ L RG E +++ + A + R V A
Sbjct: 24 IEGHLRIMVEVENGKVKDA-WSSSQLFRGLEIILKGRDPRDAQHFTQRACGVCTYVHALA 82
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+ V+ + + IP +++R L + HL++
Sbjct: 83 SSRCVDDAVKVSIPANARMMRNLVMASQYLHDHLVHFYHLHA 124
>gi|253699756|ref|YP_003020945.1| cytochrome-c3 hydrogenase [Geobacter sp. M21]
gi|251774606|gb|ACT17187.1| Cytochrome-c3 hydrogenase [Geobacter sp. M21]
Length = 559
Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats.
Identities = 42/371 (11%), Positives = 87/371 (23%), Gaps = 89/371 (23%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H + +++ A+ L + + K G H GGV I E +
Sbjct: 173 HPAMKLSPEVNLMAVAHYLKALDYQRKASQATAILGGKNPHIQNLVVGGVATAINTENIA 232
Query: 172 DIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMI--------- 222
+ + L + + + G K +G G + M
Sbjct: 233 TLNMERLIYLRTLMEETRDFVQKVYYPDLLAIAGAYKEWFKYGAGVTNYMAVPEFPEDTK 292
Query: 223 ---------------------------------RGSGAAWDLRKS----QPYECYSELDF 245
+ P+E ++ D+
Sbjct: 293 NGKFSLPGGVVMGGNIAGIRPVKDHRDEYLIKNIKENVTHAWYEGNGTLHPWEGETKPDY 352
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKV------------------- 286
+ + + + + G KV
Sbjct: 353 TDFKENGKYSWCKAPTLDGKPVQVGPPAQIMAAYAAGNPKVKKLVDGAVSTLGLSMKDIH 412
Query: 287 ---GPVSASDPK---IVPPKRADMKRSMESLIHHFKLYTEGYHVPVGE--VYAAVEAPKG 338
G + + + ++ + + ++ + Y +P GE EAP+G
Sbjct: 413 STMGRLYCRGARAHIMADIALENLDKLIANIATGDQTYANHTEIPKGEYRGVGFHEAPRG 472
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLAD------VSAI 383
+++ K + P + L E G+ +AD V
Sbjct: 473 TLSHWIVIK-DKKIENYQAVVPSTWNAAPRNDKGELGPYEASLVGNPIADSSKPLEVLRT 531
Query: 384 LGSLDIVFGEV 394
+ S D
Sbjct: 532 IHSFDPCIACA 542
Score = 101 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E +G V + RG E +++ + A + R V +
Sbjct: 12 IEGHLRIDVEANGGKVTNA-WSSAQMWRGIEVILKGRAPEDAWSFVQRFCGVCTTVHAIS 70
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE L +E+P+ Q IR + + H+++ +
Sbjct: 71 SIRAVEHALNVEVPLNAQYIRNIMIAQHSVQDHIVHFYHLSA 112
>gi|330834668|ref|YP_004409396.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Metallosphaera cuprina
Ar-4]
gi|329566807|gb|AEB94912.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Metallosphaera cuprina
Ar-4]
Length = 368
Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats.
Identities = 74/388 (19%), Positives = 131/388 (33%), Gaps = 59/388 (15%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
SF +GP I+ GE +E V + G R + +++ +R
Sbjct: 36 SFEFVYGPSAGGLLESTAFIISTYGEDIEAVK-NAGYKLRQI--KVTNMPLNESIIRVER 92
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT 127
++ + + A+EK E+P + R+ E+ RI +HLL + + L
Sbjct: 93 INANFAASHTISLLSAIEKATETEVPQKVIEARIAQLELERIRNHLLVIQRELETASFLV 152
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
P ++ E+ ++ G R + +I C L +I
Sbjct: 153 PNYLLLQQIEETNRAISKSCGHRYFFGAN------------SLGEIRCELVLPRLKLKEI 200
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+D+L NRIF R G + G R +G +D R Y +LD +
Sbjct: 201 NDIL-ENRIFIDRLQGNGKI-----IESYAIGPAARAAGLEYDARLEVEELGYKDLDLKL 254
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
+ GD + R LVR+ E+ ES +++++ K+ P K
Sbjct: 255 VKEEEGDAFARILVRLREIEESYRLLQEI------------------KVSPVKYE----- 291
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
G VE+P G+ YL + + P +++
Sbjct: 292 --------------VKSKDGCAIGRVESPSGDLAYYLKMR-SGVIEQVHLLPPSKINMRL 336
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVD 395
G+ D + S I E++
Sbjct: 337 FLKSMPGNIFTDFAFNWESFGIWLSEIE 364
>gi|323139220|ref|ZP_08074275.1| nickel-dependent hydrogenase large subunit [Methylocystis sp. ATCC
49242]
gi|322395518|gb|EFX98064.1| nickel-dependent hydrogenase large subunit [Methylocystis sp. ATCC
49242]
Length = 598
Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 42/102 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D E V R G + RG E +++ + A + +R+ V
Sbjct: 28 IEGHLRVEVNVDSENVIRNAVSTGTMWRGIEVILKNRDPRDAWAFTERICGVCTGTHALT 87
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LG+ IP IR L ++ H+++
Sbjct: 88 SVRAVEDALGVTIPENANSIRNLMQLALQVHDHIVHFYHLHA 129
Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats.
Identities = 39/383 (10%), Positives = 82/383 (21%), Gaps = 111/383 (28%)
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
++ A+ L + +++++ + G H + G +
Sbjct: 199 ANLMAVAHYLEALDFQKEIVKIHTIFGGKNPHPNWLVGGVPCAINVDGTGAVGAVNMERL 258
Query: 181 PSALNDISDLLT-GNRIFKQRNVNIGTVKLEDAWGWGFSG-------------------- 219
+ I L+ ++++ + IG+ + G G SG
Sbjct: 259 NLVDSIIDQLIEFTDKVYIPDVMAIGSFYKDWLHGGGLSGKSVLAYGDVPENANDYSASN 318
Query: 220 -----------------------VMIRGSGAAWDLRKS-------QPYECYSELDFD--- 246
A K P++ +E F+
Sbjct: 319 LLLPQGAIINGKLDEIHPVDLRDPNEIQEFVAHSWYKYGDETKGLHPWDGVTEPHFELGP 378
Query: 247 ----------IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPK- 295
+ + E + R + GK + K
Sbjct: 379 NAKGTKTNIVELDESAKYSWIKAPRWKGHAMEVGPLARWVIGYAQGKPQFKEPVEKVLKD 438
Query: 296 --------------------IVPPKRADMKRSMESLIHHFK----------LYTEGYHVP 325
M+ + LI + K +
Sbjct: 439 LDLRTTALFSTLGRTAARALEAQWAGYQMRHFFDKLIGNIKAGDLSTANVEKWEPKTWPA 498
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA---------HLQAMEFLCKGHQ 376
+ EAP+G ++ K + P ++ A E
Sbjct: 499 ATKGVGFTEAPRGALAHWIKIK-DGKIDNYQCVVPTTWNGSPRDPAGNIGAFEAALMDTP 557
Query: 377 LAD------VSAILGSLDIVFGE 393
+ D + L S D
Sbjct: 558 MIDPAQPLEILRTLHSFDPCLAC 580
>gi|58042479|gb|AAW63679.1| NADH dehydrogenase subunit 7 [Asarum sp. Qiu 96018]
Length = 155
Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats.
Identities = 88/155 (56%), Positives = 111/155 (71%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
YV+ M QEHA++ AVE+LL +P+R Q IRVL+ EI RI +H L TT AMDVGA TP
Sbjct: 1 YVSMMAQEHAHSSAVERLLNCFVPLRAQYIRVLFREITRISNHSLASTTHAMDVGASTPS 60
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
LW EEREKL+ F+ER SG+RMHA++ RPGGV QD+P L DI F S +++ +
Sbjct: 61 LWASEEREKLLEFHERVSGARMHASFIRPGGVAQDLPLGLCRDIDSSTQQFASRIDESEE 120
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRG 224
+ TGNRI+KQR V+IGTV + A WGFSGVM+RG
Sbjct: 121 MSTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRG 155
>gi|39934038|ref|NP_946314.1| hydrogenase large chain [Rhodopseudomonas palustris CGA009]
gi|39647886|emb|CAE26406.1| hydrogenase large chain [Rhodopseudomonas palustris CGA009]
Length = 597
Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats.
Identities = 39/232 (16%), Positives = 64/232 (27%), Gaps = 36/232 (15%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D V R G + RG E +++ + A + R+ V
Sbjct: 27 IEGHLRVEVNVDSNNVIRNAVSTGTMWRGIEVILKGRDPRDAWAFTQRICGVCTGTHALT 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA------------------- 120
AVE L I +P IR + + HL++
Sbjct: 87 SVRAVENALKINVPENANTIRNIMQLALYVHDHLVHFYHLHALDWVDVVSALKADPKATS 146
Query: 121 -------MDVGALTPPLWGFEEREKLMVFYERAS----GSRMHAAYFRPGGVHQDIPPEL 169
+ + R V + G H AY P +
Sbjct: 147 ALAQSISPWPMSSPGYFKDLQIRLTKFVESGQLGPFKNGYWGHPAYKLPPEANLMAVAHY 206
Query: 170 VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVM 221
+E + F + I + G V G + G G G +
Sbjct: 207 LEAL-----DFQKEIVKIHTIYGGKNPHPNWLVG-GVPCSINVDGTGAVGAI 252
Score = 101 bits (253), Expect = 2e-19, Method: Composition-based stats.
Identities = 37/392 (9%), Positives = 81/392 (20%), Gaps = 111/392 (28%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H ++ A+ L + +++++ + G H + G
Sbjct: 189 HPAYKLPPEANLMAVAHYLEALDFQKEIVKIHTIYGGKNPHPNWLVGGVPCSINVDGTGA 248
Query: 172 DIGCWCDSF------------PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWG----- 214
+ + DL+ +K G
Sbjct: 249 VGAINIERLNLVSSIIDQTVAFVEQVYVPDLVAIAGFYKDWLYGGGLSSKSVMSYGDLPE 308
Query: 215 ----------WGFSGVMIRG-----------------SGAAWDLRKS-------QPYECY 240
GV+I G K PY+
Sbjct: 309 YANDYSDKSLMLPRGVIINGNLNEVLPVDLSAPDQIQEFVTHSWYKYADEGKGLHPYDGV 368
Query: 241 SELDF-------------DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKV- 286
+E +F + + + E + R + GK +
Sbjct: 369 TEPNFVLGPNAKGTRTNIEALDESAKYSFLKAPRWKGHAVEVGPLARYIIGYAQGKPEFK 428
Query: 287 ---------------------------GPVSASDPKIVPPKRADMKRSMESLIH---HFK 316
G + + + + S+++ +
Sbjct: 429 EPTEKLLKTLDVPVTALFSTLGRTAARGLECQWAARKLRAAQDKLMASIKAGDLSTANTD 488
Query: 317 LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA---------HLQA 367
+ + EAP+G ++ + + P ++ A
Sbjct: 489 KWHPSSWPKDVKGVGFTEAPRGALAHWVKIKDT-RIDNYQCVVPTTWNGSPRDPQGNIGA 547
Query: 368 MEFLCKGHQLAD------VSAILGSLDIVFGE 393
E +AD + L S D
Sbjct: 548 FEAALLDTPMADPNQPLEIIRTLHSFDPCLAC 579
>gi|291288386|ref|YP_003505202.1| nickel-dependent hydrogenase large subunit [Denitrovibrio
acetiphilus DSM 12809]
gi|290885546|gb|ADD69246.1| nickel-dependent hydrogenase large subunit [Denitrovibrio
acetiphilus DSM 12809]
Length = 566
Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats.
Identities = 56/391 (14%), Positives = 94/391 (24%), Gaps = 95/391 (24%)
Query: 98 LIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFR 157
L H ++ A L E +++++ + H F
Sbjct: 160 KTGRLGPFANAYWGHSAYKLPPEANLMATAHYLQALELQKEIIKIHAVLGSKNPHPQTFL 219
Query: 158 PGGVHQDIPPE-----LVEDIGCWCDSFPSALNDISDLLTGN----RIFKQRNVNIGTVK 208
GG+ I P + I + A+ + + + F IG
Sbjct: 220 VGGMAIPIDPNSQNAINADKIAMLLEYNKLAVEFVEQVYVPDILAVAPFYLDWAGIGAGH 279
Query: 209 LEDAW--------------GWGFSG----------------VMIRGSGAAWDLRK--SQP 236
W SG + S AW + K P
Sbjct: 280 KNYMSYGEFPETQLGYPNDMWLPSGIIKGGDLSNIIEVDQAKIAEDSAHAWYVDKSAKHP 339
Query: 237 YECYSELDFDIPIGKH-------GDCYDRYLVRMMEMRESVKIIRQCVNRL--------- 280
Y+ +E + P + Y + E E + R V
Sbjct: 340 YDGSTERHYTGPKPPYDFLDVEKEYSYVKAPRYEGEPMEVGPLARMLVAYAKGHPEVKAV 399
Query: 281 ----LGKNKVGPVSASDPKIVPPKRA--------DMKRSMESLIHHFK----------LY 318
LGK GP RA + + + L + K +
Sbjct: 400 VDAVLGKLNAGPEVLFSTLGRTAARAIESLVTAKRVDKWIMDLATNIKSGDYQVHAGSKW 459
Query: 319 TEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM---------E 369
V + Y EAP+G G +++ + P + M E
Sbjct: 460 EPSTWPSVAKGYGYHEAPRGALGHWIVIK-DGAIKNYQAVVPSTWNAGPMDKGDVHGPYE 518
Query: 370 FLCKGHQLAD------VSAILGSLDIVFGEV 394
G +AD + + S D
Sbjct: 519 QSLIGTPIADPDKPLEILRTIHSFDPCLACA 549
Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +++ + G + RG EK++ + A R V A
Sbjct: 13 IEGHLRIEAKVENGKIVDA-WSSGTMFRGIEKILNGRDPRDAWYITQRFCGVCTTVHSIA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI++P +LIR + I H+++
Sbjct: 72 SIRAVENALGIKVPYNAELIRNIIMGSQYIQDHVVHFYHLHA 113
>gi|313650945|gb|EFS15345.1| hydrogenase-4 component G domain protein [Shigella flexneri 2a str.
2457T]
gi|332755130|gb|EGJ85495.1| hydrogenase-4 component G domain protein [Shigella flexneri
4343-70]
gi|332755530|gb|EGJ85894.1| hydrogenase-4 component G domain protein [Shigella flexneri K-671]
gi|332756148|gb|EGJ86499.1| hydrogenase-4 component G domain protein [Shigella flexneri
2747-71]
gi|332766295|gb|EGJ96505.1| hydrogenase 4, large subunit domain protein [Shigella flexneri
2930-71]
gi|333001622|gb|EGK21190.1| hydrogenase-4 component G domain protein [Shigella flexneri VA-6]
gi|333002019|gb|EGK21585.1| hydrogenase-4 component G domain protein [Shigella flexneri K-218]
gi|333016298|gb|EGK35629.1| hydrogenase-4 component G domain protein [Shigella flexneri K-304]
Length = 138
Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 303 DMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
M + L TEG+ P VEAP+GE + + K +R + RA
Sbjct: 12 AMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAAT 71
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 72 YANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 106
>gi|317485675|ref|ZP_07944546.1| nickel-dependent hydrogenase [Bilophila wadsworthia 3_1_6]
gi|316923040|gb|EFV44255.1| nickel-dependent hydrogenase [Bilophila wadsworthia 3_1_6]
Length = 557
Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats.
Identities = 51/356 (14%), Positives = 88/356 (24%), Gaps = 74/356 (20%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDI--PPEL 169
H ++ A L + K H + GGV PE
Sbjct: 186 HPAYYLDPEANLIATAHYLEALRLQVKAARAMAVFGAKNPHTQFLVAGGVTCYESLTPER 245
Query: 170 VEDIGCWCDSFPSALNDIS--DLLTGNRIFKQRNVNIGTVKLEDAWGWGFS--------- 218
+ + +N + DLL +K GT +
Sbjct: 246 IAEFEGLYKEVNDFVNQVYIPDLLLVGGAYKDWTKIGGTANFMTFGEFPGDERNLESRWF 305
Query: 219 ---------------GVMIRGSGAAWDLRK----SQPYECYSELDFDIPIGKHGDCYDRY 259
+P++ +E F K + +
Sbjct: 306 KPGVVFDRKLEALPFDPSKIEEHVRHSWYAGDAVHKPFQGVTEPKFTFMGDKDRYSWMKA 365
Query: 260 LVRMMEMRESVKIIRQCVNRLLGKNKVGPV------------------------SASDPK 295
E+ + + V L G +V PV +
Sbjct: 366 PRYDGRAVETGPLAQVLVAYLKGNAEVVPVVDSVLQTLSLTPGDLFSTLGRTAARGIETA 425
Query: 296 IVPPKRADMKRSM-ESLIHHFKLYTEGYHVP-VGEVYAAVEAPKGEFGVYLISDGGNKPY 353
++ K +M + E++ K E VP GE V AP+G +L+ K
Sbjct: 426 VIAKKTGEMLQEYKENVASGDKKIVENCEVPDKGEGAGFVNAPRGGLSHWLVI-ENKKVA 484
Query: 354 RCKIRAPGYAHL---------QAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
++ P +L A+E +AD + + S D
Sbjct: 485 NFQLVVPSTWNLGPRCSKGIPSAVEEALVNTPIADPKRPVEILRTVHSFDPCIACA 540
Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats.
Identities = 22/105 (20%), Positives = 39/105 (37%), Gaps = 1/105 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E+ V +G L+RG E ++ + + R V A
Sbjct: 24 IEGHLRIEVEVKDGRVSEAR-SVGTLYRGLETILVGRDPRDVQHFTQRTCGVCTYTHALA 82
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
A+E + +EIP IR L + + H+++
Sbjct: 83 STRALEDAIKVEIPKNATYIRNLVLGMQYLHDHIVHFYHLHALDF 127
>gi|225850250|ref|YP_002730484.1| uptake hydrogenase large subunit (Hydrogenlyase)(Membrane-bound
hydrogenase large subunit) [Persephonella marina EX-H1]
gi|225645349|gb|ACO03535.1| uptake hydrogenase large subunit (Hydrogenlyase)(Membrane-bound
hydrogenase large subunit) [Persephonella marina EX-H1]
Length = 586
Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats.
Identities = 45/366 (12%), Positives = 84/366 (22%), Gaps = 100/366 (27%)
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++ L E + ++ G H GGV + + IG + D +
Sbjct: 200 AVSHYLDALEMQREMAKLMAIFGGKNPHPQSLVVGGVTCVLDIQNPARIGQFKDILMKSR 259
Query: 185 NDISDLLT----------GNRIFKQRNVNIGTVKLEDAWGW----GFSGVMIRGSGA--- 227
I + K +G + + G ++ G
Sbjct: 260 EFIYRAYLPDLLMAGAVYADEALKGIGKGLGNYMAYGDFRMDDNDWYKGELLFPPGVVLN 319
Query: 228 ---------------------AWDLRKSQPYECYSELDFDIPIGKHGD---------CYD 257
++ +QP Y G D +
Sbjct: 320 MDLSTVYDLDQSKITEDVTHSWYEYSVNQPLHPYEGQTNPKYTGFRKDGTVDPKGKYSWI 379
Query: 258 RYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSAS---------------------DPKI 296
+ + + E + R V G ++
Sbjct: 380 KSPIYDDKRVEVGPLARMIVGYARGNERIKHYVDWLLNSGNLPVQVLFSTVGRTAARAVE 439
Query: 297 VPPKRADMKRSMESL-------------IHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVY 343
M ++ L F+ T+G + Y EAP+G G +
Sbjct: 440 TALMVDVMVEWVDQLAKNVASGDLSTWTEFDFERLTKGKELK---GYGLTEAPRGALGHW 496
Query: 344 LISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLAD------VSAILGSLD 388
+ K + P + + A E G L+D + + S D
Sbjct: 497 IKIK-DGKVENYQAVVPSTWNAAPRDYKNRMGAYEASLIGTTLSDPDQPLEILRTIHSFD 555
Query: 389 IVFGEV 394
Sbjct: 556 PCIACA 561
Score = 98.9 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 2/103 (1%)
Query: 20 AHGVLRLILELD-GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G LR+ LD V + RG E +++ + R+ V +
Sbjct: 13 IEGHLRIEAILDENNTVIDA-YSSSTMWRGIEIIMKGRDPRDVPLLAMRICGVCTGTHYY 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
VE LGI P +L+R L I H+++
Sbjct: 72 TSTQTVEHALGIVPPKNARLVRNLIQGSLYIHDHVVHFYHLHA 114
>gi|39995891|ref|NP_951842.1| nickel-dependent hydrogenase large subunit [Geobacter
sulfurreducens PCA]
gi|39982655|gb|AAR34115.1| nickel-dependent hydrogenase, large subunit [Geobacter
sulfurreducens PCA]
gi|307634748|gb|ADI83628.2| periplasmically oriented, membrane-bound [NiFe]-hydrogenase large
subunit [Geobacter sulfurreducens KN400]
Length = 560
Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats.
Identities = 50/383 (13%), Positives = 92/383 (24%), Gaps = 89/383 (23%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H +++ A+ L + + + G H G
Sbjct: 162 GQLGIFASGYWGHPAMKLPPEVNLIAVAHYLKALDYQRRASQAVAILGGKNPHVQNLVVG 221
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALND----------ISDLLTGNRIFKQRNVNIGTVKL 209
GV + E + + +F L + DL+ +K+ V
Sbjct: 222 GVATAVNMENIATLNMERIAFLRTLMEETREFVQKVYYPDLVAIASFYKEWFKYGAGVTN 281
Query: 210 E----------DAWGWGFSGVMIRG----------------------SGAAWDLRKS--- 234
+G G I G G A +
Sbjct: 282 YLAVPEFAEDTRNTKFGLPGGTIYGGDLGTFKAITTHQDAALIQGVTEGVAHAWYEGSDS 341
Query: 235 -QPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKI-------------IRQCVNRL 280
P+E ++ + + + + + +++ V+
Sbjct: 342 LHPWEGETKPQYTDFQENGKYTWCKSPRYNGKPMQVGPPAQVMAAYATGHPKVKKLVDDA 401
Query: 281 LGKNKVGPVSASDPKIVPPKRADMKRSM--ESLIHHFKL----------YTEGYHVPVGE 328
K +GP R M SL + KL Y +P GE
Sbjct: 402 AAKLGIGPKELHSTMGRLFCRGVRAHVMADYSLEYLDKLVANIGKGDSTYANHTEIPDGE 461
Query: 329 --VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQL 377
EAP+G +++ K + P + E G+ +
Sbjct: 462 YKGVGFHEAPRGALSHWIVI-EKKKIKNYQAVVPSTWNASPRDENGVAGPYEACLVGNPV 520
Query: 378 A------DVSAILGSLDIVFGEV 394
A +V + S D
Sbjct: 521 AQPDKPLEVLRTIHSFDPCIACA 543
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E++G V + + RG E +++ + A Y R V +
Sbjct: 13 IEGHLRIDVEVNGGQVAKA-WSSAQMWRGIETILKGRDPQDAWSYAQRFCGVCTTVHAIS 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+VE L +E+P+ Q IR + + H+++ +
Sbjct: 72 SIRSVENALNVEVPLNAQYIRNIMIAQHSVQDHIVHFYHLSA 113
>gi|83630690|gb|ABC26855.1| HupL [Bradyrhizobium sp. UPM1167]
Length = 596
Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats.
Identities = 41/392 (10%), Positives = 81/392 (20%), Gaps = 111/392 (28%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H M++ A+ L + +++++ G H + G
Sbjct: 188 HPAYKLPPEMNLMAVAHYLEALDFQKEIVKIQAIYGGKNPHPNWLVGGVACAINIDGNGA 247
Query: 172 DIGCWCDSF------------PSALNDISDLLTGNRIFKQRNVNIGT------------- 206
+ + D+ +K G
Sbjct: 248 VGAINMERLNLVSSVIDRSIEFVEQVYLPDIAAIGSFYKDWLHGGGLSSKSVMSYGDIPE 307
Query: 207 -------------------VKLEDAWGWGFSGVMIRGSGAAWDLRKS-------QPYECY 240
LE+ A K P++
Sbjct: 308 NANDCSAKSLKLPRGVILGGNLEEILPIDHGDPEQIQEFVAHSWYKYPSEFSGLHPWDGV 367
Query: 241 SELDF-------------DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVG 287
+E +F + + E + R + GK +
Sbjct: 368 TEPNFELGAKVKGSRTDIKELDEDGRYSWIKAPRWRGHAVEVGPLARYIIGYAQGKAEFK 427
Query: 288 PVSASDPKIV---------------------PPKRADMKRSMESLIHHFK---------- 316
+ K + M+ + L+ H K
Sbjct: 428 EPAERLLKGLNLPLTALFSTLGRTATRALECQWAAHQMRYFQDKLVVHIKQGNSATADVS 487
Query: 317 LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA---------HLQA 367
+ + Y EAP+G G ++ K + P ++ A
Sbjct: 488 NWKPEGWPNEAKGYGFTEAPRGALGHWIKIK-NAKIDNYQCVVPTTWNGSPRDPKGNIGA 546
Query: 368 MEFLCKGHQLAD------VSAILGSLDIVFGE 393
E G +AD + + S D
Sbjct: 547 FEASLIGTPVADPQRPLEILRTIHSFDPCLAC 578
Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 39/102 (38%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ LD V R G + RG E ++ + A + +R+ V A
Sbjct: 26 IEGHLRVEANLDSNNVIRNAVSSGTMWRGIEVILRGRDPRDAWAFTERICGVCTGTHALA 85
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI IP IR + + HL++
Sbjct: 86 SVRAVENALGIAIPENANSIRNIMQLCLLVHDHLVHFYHLHA 127
>gi|297519441|ref|ZP_06937827.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Escherichia coli OP50]
Length = 87
Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats.
Identities = 36/87 (41%), Positives = 49/87 (56%)
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
+LI HF + G +P E + +EA KG YL SDG YR +IR P YAHLQ +
Sbjct: 1 TLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSYAHLQQIP 60
Query: 370 FLCKGHQLADVSAILGSLDIVFGEVDR 396
+G ++D+ LGS+D V +VDR
Sbjct: 61 AAIRGSLVSDLIVYLGSIDFVMSDVDR 87
>gi|192289565|ref|YP_001990170.1| nickel-dependent hydrogenase large subunit [Rhodopseudomonas
palustris TIE-1]
gi|192283314|gb|ACE99694.1| nickel-dependent hydrogenase large subunit [Rhodopseudomonas
palustris TIE-1]
Length = 597
Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats.
Identities = 39/232 (16%), Positives = 64/232 (27%), Gaps = 36/232 (15%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D V R G + RG E +++ + A + R+ V
Sbjct: 27 IEGHLRVEVNVDSNNVIRNAVSTGTMWRGIEVILKGRDPRDAWAFTQRICGVCTGTHALT 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA------------------- 120
AVE L I +P IR + + HL++
Sbjct: 87 SVRAVENALKINVPENANTIRNIMQLALYVHDHLVHFYHLHALDWVDVVSALKADPKATS 146
Query: 121 -------MDVGALTPPLWGFEEREKLMVFYERAS----GSRMHAAYFRPGGVHQDIPPEL 169
+ + R V + G H AY P +
Sbjct: 147 ALAQSISPWPMSSPGYFKDLQIRLTKFVESGQLGPFKNGYWGHPAYKLPPEANLMAVAHY 206
Query: 170 VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVM 221
+E + F + I + G V G + G G G +
Sbjct: 207 LEAL-----DFQKEIVKIHTVYGGKNPHPNWLVG-GVPCSINVDGTGAVGAI 252
Score = 101 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 37/392 (9%), Positives = 81/392 (20%), Gaps = 111/392 (28%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H ++ A+ L + +++++ + G H + G
Sbjct: 189 HPAYKLPPEANLMAVAHYLEALDFQKEIVKIHTVYGGKNPHPNWLVGGVPCSINVDGTGA 248
Query: 172 DIGCWCDSF------------PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWG----- 214
+ + DL+ +K G
Sbjct: 249 VGAINIERLNLVSSIIDQTVAFVEQVYVPDLVAIAGFYKDWLYGGGLSSKSVMSYGDLPE 308
Query: 215 ----------WGFSGVMIRG-----------------SGAAWDLRKS-------QPYECY 240
GV+I G K PY+
Sbjct: 309 YANDYSDKSLMLPRGVIINGNLNEVLPVDLSAPDQIQEFVTHSWYKCADEGKGLHPYDGV 368
Query: 241 SELDF-------------DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKV- 286
+E +F + + + E + R + GK +
Sbjct: 369 TEPNFVLGPNAKGTRTNIEALDESAKYSFLKAPRWKGHAVEVGPLARYIIGYAQGKPEFK 428
Query: 287 ---------------------------GPVSASDPKIVPPKRADMKRSMESLIH---HFK 316
G + + + + S+++ +
Sbjct: 429 EPTEKLLKTLDVPVTALFSTLGRTAARGLECQWAARKLRAAQDKLMASIKAGDLSTANTD 488
Query: 317 LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA---------HLQA 367
+ + EAP+G ++ + + P ++ A
Sbjct: 489 KWHPSSWPKDVKGVGFTEAPRGALAHWVKIKDT-RIDNYQCVVPTTWNGSPRDPQGNIGA 547
Query: 368 MEFLCKGHQLAD------VSAILGSLDIVFGE 393
E +AD + L S D
Sbjct: 548 FEAALLDTPMADPNQPLEIIRTLHSFDPCLAC 579
>gi|296446746|ref|ZP_06888685.1| nickel-dependent hydrogenase large subunit [Methylosinus
trichosporium OB3b]
gi|296255749|gb|EFH02837.1| nickel-dependent hydrogenase large subunit [Methylosinus
trichosporium OB3b]
Length = 596
Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 41/102 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D + V R G + RG E +++ + A + R+ V
Sbjct: 26 IEGHLRVEVNVDKDNVIRNAVSTGTMWRGIEVILKGRDPRDAWAFTQRICGVCTGTHALT 85
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI IP IR + +I HL++
Sbjct: 86 SVRAVENALGITIPENANSIRNMMQLALQIHDHLVHFYHLHA 127
Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats.
Identities = 37/392 (9%), Positives = 78/392 (19%), Gaps = 111/392 (28%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE--- 168
H ++ A+ L + +++++ G H + G
Sbjct: 188 HAAYKLPPEANLMAVAHYLEALDFQKEIVKVQTIFGGKNPHPNWLVGGVPCAINVDGTGA 247
Query: 169 ----LVEDIGCWCDSFPSALNDIS-----DLLTGNRIFKQRNVNIG-------------- 205
+E + ++ + D+L +K G
Sbjct: 248 VGAINMERLNEVSTIIQQSIEFVEKVYVPDILAIGSFYKDWLYGGGLSGKNVMGYGDIPE 307
Query: 206 --------------------------------------TVKLEDAWGWGFSGVMIRGSGA 227
V + + G
Sbjct: 308 HANDFSPANLGLPRGVILNGNLNEVFPVDHTDPEQIQEFVTHSWYKYPDETKGLHPWDGV 367
Query: 228 AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVG 287
K P + + + + E + R V G+ +
Sbjct: 368 TEPNYKLGPAAKGTPTNIVELDEAGKYSWIKSPRWRGHAVEVGPLARYIVGYAQGRAEFK 427
Query: 288 PVSASDPK---------------------IVPPKRADMKRSMESLIHHFK---------- 316
+ K M+ + LI + K
Sbjct: 428 EPTDEFLKKLGVPVTALFSTLGRTAARALEAQWAARKMEYFHQKLIANIKAGDSSTANID 487
Query: 317 LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA---------HLQA 367
+ + + EAP+G ++ K + P ++ A
Sbjct: 488 KWKPESWPKEAKGFGFTEAPRGALAHWIRVK-DGKIDNYQCVVPTTWNGSPRDPKGNIGA 546
Query: 368 MEFLCKGHQLAD------VSAILGSLDIVFGE 393
E LAD + + S D
Sbjct: 547 FEASLMDTPLADPQKPLEILRTIHSFDPCLAC 578
>gi|333002276|gb|EGK21840.1| hydrogenase-4 component G domain protein [Shigella flexneri K-272]
gi|333016097|gb|EGK35429.1| hydrogenase-4 component G domain protein [Shigella flexneri K-227]
Length = 138
Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 303 DMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
M + L TEG+ P VEAP+GE + + K +R + RA
Sbjct: 12 AMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAAT 71
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 72 YANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 106
>gi|289810870|ref|ZP_06541499.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Typhi str. AG3]
Length = 104
Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats.
Identities = 39/90 (43%), Positives = 53/90 (58%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAV 62
+N GP HP+AHG R+IL+LDGE + P IG HRG EK+ E +++ +
Sbjct: 15 TDNEDFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYI 74
Query: 63 PYFDRLDYVAPMNQEHAYALAVEKLLGIEI 92
PY DR++Y+ E Y LAVEKL GI +
Sbjct: 75 PYTDRIEYLGGCVNEMPYVLAVEKLAGITV 104
>gi|78357181|ref|YP_388630.1| periplasmic (NiFe) hydrogenase large subunit, isozyme 1
[Desulfovibrio desulfuricans subsp. desulfuricans str.
G20]
gi|78219586|gb|ABB38935.1| periplasmic (NiFe) hydrogenase, large subunit, isozyme 1
[Desulfovibrio desulfuricans subsp. desulfuricans str.
G20]
Length = 568
Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats.
Identities = 49/357 (13%), Positives = 88/357 (24%), Gaps = 76/357 (21%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQD---IPPE 168
H +D+ A L + K H + GGV P
Sbjct: 195 HPSYYLEPEVDLIATAHYLEALRLQVKAARAMAVFGAKNPHTQFTDVGGVTCYAALTPER 254
Query: 169 LVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG--------- 219
+ E W ++ L + IG +G +
Sbjct: 255 IAEFTALWKETKAFIDEVYIPDLLAVAGSYKDWSAIGGTSNFLTFGEFPTDEYDLNSRFF 314
Query: 220 -----------------VMIRGSGAAWDLRK----SQPYECYSELDFDIPIGKH-GDCYD 257
+ + PYE +E + G++ +
Sbjct: 315 PQGAIFNRDLSAVKDFDPSSIMEHVRYSWYEGDKAHHPYEGVTEPKYTGLRGENDRYSWM 374
Query: 258 RYLVRMMEMRESVKI-------------IRQCVNRLLGKNKVGPV-----------SASD 293
+ + E E+ + + V+ +LGK VGP +
Sbjct: 375 KAPRYLEEPMETGPLAQVLTAYARGHKETKALVDMVLGKLGVGPEALFSTLGRTAARGIE 434
Query: 294 PKIVPPKRADMKRSMESLIHHFK--LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNK 351
I+ K M ++ I +Y E V AP+G ++ K
Sbjct: 435 TAIIAEKTGQMINELKDNIASGDTTIYEPWEMPDEAEGVGFVTAPRGALSHWIKIRE-GK 493
Query: 352 PYRCKIRAPGYA-------H--LQAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
++ P + L +E G +AD + + S D
Sbjct: 494 IENFQLVVPSTWSLGPRCANGKLSPVEEALVGTPVADPKRPVEILRTVHSFDPCIAC 550
Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats.
Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E++ ++ L RG E +++ + A + R V A
Sbjct: 33 IEGHLRIEVEVENGRIKNA-WSSSQLFRGLEIILKGRDPRDAQHFTQRSCGVCTYVHALA 91
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
V+ +G+ IP LIR + + H+++
Sbjct: 92 STRCVDNAVGVRIPKNATLIRNMVLAAQYMHDHIVHFYHLHA 133
>gi|20378805|gb|AAM20991.1| hydrogenase large subunit [Bradyrhizobium sp. UPM878]
Length = 179
Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 42/102 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R+ + +D + V R G + RG E +++ + A + +R+ V
Sbjct: 20 IEGHMRVEVNVDADNVIRNAVSTGTMWRGIEVILKNRDPRDAWAFTERICGVCTGTHALT 79
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI IP IR L ++ H+++
Sbjct: 80 SVRAVENALGITIPENANSIRNLMQLALQVHDHIVHFYHLHA 121
>gi|309791149|ref|ZP_07685682.1| nickel-dependent hydrogenase, large subunit [Oscillochloris
trichoides DG6]
gi|308226847|gb|EFO80542.1| nickel-dependent hydrogenase, large subunit [Oscillochloris
trichoides DG6]
Length = 571
Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats.
Identities = 44/398 (11%), Positives = 90/398 (22%), Gaps = 100/398 (25%)
Query: 95 RGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAA 154
R L H ++ A+ L + +++L+ + G H
Sbjct: 156 RFVDSGQLGIFANGYWGHPAYKLPAEANLMAVAHYLEALDWQKELIKIHAILGGKNPHPQ 215
Query: 155 YFRPGGVHQDIPPELVEDIGCWCDSFPSALND----------ISDLLTGNRIFKQRNVNI 204
F GG+ I P + I + +L + I DLL +K
Sbjct: 216 TFLVGGMASPIDPNAQKAINAGRIAQMRSLAEEALQFVSKVYIPDLLAIASFYKDWGALG 275
Query: 205 GTV-------------------------------------------KLEDAWGWGFSGVM 221
G V E ++
Sbjct: 276 GGVGNFLTYGDFPTSSDGSVDSFWAPRGVMLNKAVGSAPAVVDQQKVSEYVTHSWYTYSG 335
Query: 222 IRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL 281
+G ++QP + +D + + + E + R +
Sbjct: 336 GDTTGLHPWQGETQPNYTGPKPPYDWLDTEGKYSWLKTPRYDDAPMEVGPLARTLMAYAS 395
Query: 282 GKNKVGPVSASDPKI---------------------VPPKRADMKRSMESL--------- 311
G + K + ++ L
Sbjct: 396 GHTATVDTVNAVLKQLGVGAEALFSTLGRTGARGIETLLMCDQLLVWIDELADNIGRGDL 455
Query: 312 -IHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH------ 364
+H+ + + E + +EAP+G G ++ K + P +
Sbjct: 456 AVHNNERWNPASWPKEAEGWGFMEAPRGALGHWVRIK-DGKIANYQCVVPTTWNGSPRDA 514
Query: 365 ---LQAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
E + + + + S D
Sbjct: 515 KGVRGPYESALIDTPVENLDQPLEILRTIHSFDPCMAC 552
Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats.
Identities = 32/195 (16%), Positives = 58/195 (29%), Gaps = 31/195 (15%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ ++++ V + RG E ++ + A + R+ V A
Sbjct: 12 IEGHLRVEVQVENGRVVDA-WSSSTMFRGMELILRDRDPRDAWVFTQRICGVCTTVHALA 70
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA------------------- 120
AVE L I+IP +L+R + + I H+++
Sbjct: 71 SVRAVEDALQIQIPNNARLLRNIIAATLYIQDHVVHFYHLHALDWVDIVSALSADPAKTA 130
Query: 121 -------MDVGALTPPLWGFEEREKLMVFYERAS----GSRMHAAYFRPGGVHQDIPPEL 169
+ +ER K V + G H AY P +
Sbjct: 131 ELAQSISDWPKSTAGYFKAVQERIKRFVDSGQLGIFANGYWGHPAYKLPAEANLMAVAHY 190
Query: 170 VEDIGCWCDSFPSAL 184
+E + +
Sbjct: 191 LEALDWQKELIKIHA 205
>gi|167628337|ref|YP_001678836.1| uptake [ni/fe] hydrogenase, large subunit [Heliobacterium
modesticaldum Ice1]
gi|167591077|gb|ABZ82825.1| uptake [ni/fe] hydrogenase, large subunit [Heliobacterium
modesticaldum Ice1]
Length = 578
Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats.
Identities = 43/400 (10%), Positives = 88/400 (22%), Gaps = 106/400 (26%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H ++ A+ L + +++++ + G H Y G
Sbjct: 162 GQLGIFANAYWGHPAYKLPPEANLMAVAHYLEALDWQKEIVKIHTVFGGKNPHPNYLVGG 221
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALND---------ISDLLTGNRIFKQRNVNIGTVKLE 210
+ +++ + DLL +K G +
Sbjct: 222 MASAINIDGDNAINIERFNLVGKLIDEALEFVLEVYLPDLLAIAAFYKDTAAYGGGLGNY 281
Query: 211 DAWGWGFSGVMIRGSGA------------------------------AWDLRKS-----Q 235
+G + SG +
Sbjct: 282 LCFGDFSTAPNNDPSGFLLPRGAILNKNLSEVLDVDPRDPQQILEYTDHSWYEKAPKGLH 341
Query: 236 PYECYSELDFDIPIGKHG-----------DCYDRYLVRMMEMRESVKIIRQC-------- 276
P+E + L + P + + + E + R
Sbjct: 342 PWEGETNLKYTGPKAPYETLDETGAFDKPYSWIKSPRWKGHAMEVGPLARMLVGYAKKDA 401
Query: 277 ---------VNRLLGKNKVGPVSASDPKIVPPKRA--------DMKRSMESLIHHFK--- 316
+++ L VG + R +K+ LI + K
Sbjct: 402 PSHALIKDEIDKALQGLGVGVEALFSTLGRTAARGIESKLCALWLKQFFNELIANVKGGD 461
Query: 317 -------LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ--- 366
+ + EAP+G G ++ K + P +
Sbjct: 462 RKTFNQEKWEPSTWPKESKGVGLTEAPRGALGHWVRIK-DGKVTNYQCVVPSTWNASPKD 520
Query: 367 ------AMEFLCKGHQLA------DVSAILGSLDIVFGEV 394
A E G +A ++ + S D
Sbjct: 521 LKGQHGAYEASLLGVPMAKADQPVELLRTIHSFDPCLACA 560
Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 1/104 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +++G + G + RG E + + R+ V
Sbjct: 13 IEGHLRVEAKVEGGKIIDAA-SSGTMIRGIEIIARDRDPRDVWALVQRICGVCTTTHALT 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
AVE+ L I +P +LIR + + I H+++
Sbjct: 72 SIRAVEEALQIRVPKNAELIRKIMLAVIHIHDHVVHFYHLHAPD 115
>gi|226327881|ref|ZP_03803399.1| hypothetical protein PROPEN_01762 [Proteus penneri ATCC 35198]
gi|225203585|gb|EEG85939.1| hypothetical protein PROPEN_01762 [Proteus penneri ATCC 35198]
Length = 86
Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats.
Identities = 35/86 (40%), Positives = 50/86 (58%)
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
+I+HF + G +P E + VEA KG YL SDG YR +IR P +AHLQ +
Sbjct: 1 MINHFLQVSWGPVMPANESFQMVEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQQIPA 60
Query: 371 LCKGHQLADVSAILGSLDIVFGEVDR 396
+ +G ++D+ LGS+D V +VDR
Sbjct: 61 VIRGSLVSDLIVYLGSIDFVMSDVDR 86
>gi|296087071|emb|CBI33445.3| unnamed protein product [Vitis vinifera]
Length = 130
Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats.
Identities = 53/85 (62%), Positives = 64/85 (75%)
Query: 312 IHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFL 371
IHHF+ YTEG+ VP Y AVEAPKGEFGV+L+S+G N+PYR KIRAPG AH Q ++ +
Sbjct: 46 IHHFEPYTEGFFVPAPSTYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSM 105
Query: 372 CKGHQLADVSAILGSLDIVFGEVDR 396
K H ADV I+G+ DIV GEVDR
Sbjct: 106 SKHHMPADVVTIIGTQDIVSGEVDR 130
>gi|296040743|gb|ADG85339.1| NADH dehydrogenase subunit 7 [Silene conica]
Length = 139
Score = 114 bits (286), Expect = 3e-23, Method: Composition-based stats.
Identities = 82/139 (58%), Positives = 105/139 (75%)
Query: 78 HAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEERE 137
HAY+LAVE LL E+P+R Q IRVL+ EI R+L+HLL +TT AMDVGALTP LW FEERE
Sbjct: 1 HAYSLAVENLLNCEVPLRAQYIRVLFCEITRLLNHLLALTTHAMDVGALTPFLWSFEERE 60
Query: 138 KLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIF 197
KL+ FYER SG+RMHA++ RPGGV QD+P L DI + F S ++++ ++LTGNRI+
Sbjct: 61 KLLEFYERVSGARMHASFIRPGGVGQDLPFGLCRDIDSFTQQFASRIDELEEMLTGNRIW 120
Query: 198 KQRNVNIGTVKLEDAWGWG 216
K R V+IG+V + A WG
Sbjct: 121 KDRLVDIGSVTAQQAKAWG 139
>gi|302342834|ref|YP_003807363.1| nickel-dependent hydrogenase large subunit [Desulfarculus baarsii
DSM 2075]
gi|301639447|gb|ADK84769.1| nickel-dependent hydrogenase large subunit [Desulfarculus baarsii
DSM 2075]
Length = 549
Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats.
Identities = 34/371 (9%), Positives = 78/371 (21%), Gaps = 77/371 (20%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H ++ A + + + G H G
Sbjct: 161 GQLGPFANGYWGHPDYRLPAEANLLAAAHYIEWLRMQTRAARMMAMLGGKNPHVQVHVTG 220
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGN------------------------- 194
GV VE + + + I ++ +
Sbjct: 221 GVSCVQDVMDVERLSEFLWYLQAMRRFIDNVYLPDLLAVASFYKDWGGIGGTTNFLAYGN 280
Query: 195 -------RIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAW----DLRKSQPYECYSEL 243
+ + G + D D PY+ +E
Sbjct: 281 FPQKSGPYGQEDMWLPGGVIFDRDIAKPQPVDPARITEEVKRAWYADGEPRHPYQGVTEP 340
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR-- 301
+ + + E + + + G V + K +
Sbjct: 341 ILPDYDYEGKYSFFKAPRYEGRPMEVGPLAQMLMAYAGGVAPVKASVEAVLKHLDIPVTA 400
Query: 302 -------------------ADMKRSMESLIH-----HFKLYTEGYHVPVGEVYAAVEAPK 337
+M+ + ++ + ++ P+
Sbjct: 401 LFSTLGRTAARAIQTKVITDEMELWVNQIVERLRVGDTETVARWQWPGEAMGMGLIDVPR 460
Query: 338 GEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLAD------VSA 382
G G ++ + N+ ++ P + L +E G +AD +
Sbjct: 461 GALGHWVKQNAQNRIDNYQLVVPSTWNLGPRDAKGQLGPVEESLVGTPVADPKRPVEILR 520
Query: 383 ILGSLDIVFGE 393
+ S D
Sbjct: 521 TVHSFDPCIAC 531
Score = 102 bits (255), Expect = 9e-20, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E++ V+ L RG E +++ + A R V A
Sbjct: 12 IEGHLRIDVEIENGKVKDA-WSSAQLFRGLEIILKGRDPRDAPHITQRACGVCTEVHALA 70
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A++ G++IP +L R L + I H+ +
Sbjct: 71 SIRALDDAAGVKIPDLARLTRNLLHGVQFIHDHITHFYVLHA 112
>gi|193212946|ref|YP_001998899.1| nickel-dependent hydrogenase large subunit [Chlorobaculum parvum
NCIB 8327]
gi|193086423|gb|ACF11699.1| nickel-dependent hydrogenase large subunit [Chlorobaculum parvum
NCIB 8327]
Length = 572
Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats.
Identities = 44/382 (11%), Positives = 84/382 (21%), Gaps = 100/382 (26%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H +++ A+ L E +++++ G H Y G P
Sbjct: 175 HPAYKLPPEVNLIAVAHYLEALEFQKEIVKIQTIFGGKNPHPNYVVGGMACAIDPNSDTA 234
Query: 172 DIGCWCDSFPSALN---------DISDLLTGNRIFKQRNVNIGT---------------- 206
S ++ I DL+ +K G
Sbjct: 235 INIERLSMVKSIIDRTQQFIDQVYIPDLIAIAGYYKGWLYGGGLGNFMSYGDFPETTLDD 294
Query: 207 ----------------------------VKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
E+ ++ G ++ P
Sbjct: 295 YEKLLWPRGVIMGKDLTTVLDVDPRDMSQIKEEIAHSWYTYSNGSDQGLHPWEGETNPKY 354
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKN-------------K 285
+ F+ + + + E + R V G +
Sbjct: 355 TGPKPPFEYLDTDKKYSWLKTPRWKDQPVEVGPLARVLVAYAKGDPMIKDTVGMVLSKLE 414
Query: 286 VGPVSASDPKIVPPKRADMKRSMESLIHHF------------------KLYTEGYHVPVG 327
VGP + R + + HF + +
Sbjct: 415 VGPEALYSTLGRTAARGIECKQTAGFMRHFYDELVANVKTGDYQTFNSERWEPSTWPKEC 474
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLA 378
+ + EAP+G G ++ K +I P + A E KG +
Sbjct: 475 KGFGYTEAPRGSLGHWIRI-ENGKIGDYQIVVPSTWNASPRDGRGNSGAYEAALKGTPMH 533
Query: 379 D------VSAILGSLDIVFGEV 394
D + + S D
Sbjct: 534 DPSQPLEILRTVHSFDPCLACA 555
Score = 111 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 44/104 (42%)
Query: 18 PAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQE 77
P G LR+ +++ V G + RG E +++ + A + +R+ V
Sbjct: 11 PRIEGHLRIEAKMNDANVIEDAYSTGTMWRGIEVILKGRDPRDAWAFAERICGVCTTVHA 70
Query: 78 HAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A VE LGIEIP ++IR L + + HL++
Sbjct: 71 LASVRCVEDALGIEIPKNARIIRNLMNATQQTQDHLVHFYHLHA 114
>gi|189425114|ref|YP_001952291.1| nickel-dependent hydrogenase large subunit [Geobacter lovleyi SZ]
gi|189421373|gb|ACD95771.1| nickel-dependent hydrogenase large subunit [Geobacter lovleyi SZ]
Length = 566
Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats.
Identities = 49/391 (12%), Positives = 97/391 (24%), Gaps = 98/391 (25%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H ++ A L E +++++ + H F G
Sbjct: 161 GRLGPFANAYWGHPAYKLPPEANLMATAHYLEALEWQKEVIKIHAILGSKNPHPQTFLVG 220
Query: 160 GVHQDIPPE-----------LVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNV---NIG 205
G+ + P+ ++ + F + I DLL +K +G
Sbjct: 221 GMSIPVDPDSQNALNADRLITIKRLLAKAQDFVEKV-YIPDLLAIASFYKDWAAIGGGVG 279
Query: 206 TVKLEDAWGWGFSGVMIRGSG---------------------AAWDLRKS--------QP 236
+ +G + G + P
Sbjct: 280 NFLSYGEFPDPINGNLWFPPGAIMNKDISKVLPLDQQKVTEYVDHSWYEYQDAKGKGLHP 339
Query: 237 YECYSELDFDIPIGKH-------GDCYDRYLVRMMEMRESVKIIR-------------QC 276
++ SE + P + + + E + R
Sbjct: 340 WKGESEAKYTGPKPPYEFLDTDKKYSWVKAPRYDEAAMEVGPLARILVAYVAGHKESKAA 399
Query: 277 VNRLLGKNKVGPVSAS---------------DPKIVPPKRADMKRSM---ESLIHHFKLY 318
V+ +LGK VGP + + P + ++ + IH +++
Sbjct: 400 VDMVLGKLGVGPAALFSTLGRTAARGIDALLIARQTPVWLDALIANIGKGDYRIHANEMW 459
Query: 319 TEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AME 369
Y EAP+G G ++ K Y + P + E
Sbjct: 460 DPKTWPAEASGYGWHEAPRGALGHWIKIK-DQKIYNYQAVVPSTWNASPRDAKGQRGPYE 518
Query: 370 FLCKGHQLA------DVSAILGSLDIVFGEV 394
G +A ++ + S D
Sbjct: 519 AALVGTPVAKPDQPLEILRTIHSFDPCLACA 549
Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ ++ + RG EK+++ + A + R V A
Sbjct: 12 IEGHLRIEAEIEDGKIKDA-WSSSTMFRGIEKILKGRDPRDAWYWTQRFCGVCTTVHSIA 70
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE L I+IP QLIR + I + H+++
Sbjct: 71 SIRAVEDALKIKIPPNAQLIRNIIIGIQGVQDHVIHFYHLHA 112
>gi|75762934|ref|ZP_00742738.1| NADH-quinone oxidoreductase chain D [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|74489576|gb|EAO52988.1| NADH-quinone oxidoreductase chain D [Bacillus thuringiensis
serovar israelensis ATCC 35646]
Length = 82
Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats.
Identities = 34/72 (47%), Positives = 50/72 (69%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
++ +N GPQHP+ HGV RL++++DGEI+ P IG LHRGTEK+ E+ + Q +PY
Sbjct: 3 RTEEMLLNVGPQHPSTHGVFRLVIKIDGEIIREATPVIGYLHRGTEKIAESLQYTQIIPY 62
Query: 65 FDRLDYVAPMNQ 76
DR+DY++ M
Sbjct: 63 TDRMDYLSAMTN 74
>gi|189500524|ref|YP_001959994.1| nickel-dependent hydrogenase large subunit [Chlorobium
phaeobacteroides BS1]
gi|189495965|gb|ACE04513.1| nickel-dependent hydrogenase large subunit [Chlorobium
phaeobacteroides BS1]
Length = 572
Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats.
Identities = 48/394 (12%), Positives = 90/394 (22%), Gaps = 100/394 (25%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H +++ A+ L + +++++ + G H Y G
Sbjct: 163 GQLGIFANGYWGHPAYKLPPEVNLIAVAHYLEALDFQKEIVKIHTVFGGKNPHPNYLVGG 222
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALND---------ISDLLTGNRIFKQRNVNIGTVK-- 208
P + D I DL+ +K G
Sbjct: 223 MACALDPDRDTAINIETLSMVKKIIEDTQTFIEQVYIPDLIAIAGFYKDWGYGGGLGNYL 282
Query: 209 ------------------------------------------LEDAWGWGFSGVMIRGSG 226
E+ ++ G
Sbjct: 283 CYGDFPEKSIDDAASLLWPRGAILNKDLSTIHDVDPRDLSQVTEEVSHSWYTYSNGDEKG 342
Query: 227 AAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRL------ 280
+++P + F+ + + + E + R +
Sbjct: 343 LHPWEGETKPEYTGPKPPFEYLDTEKKYSWLKTPRWKNNPMEVGPLARVLLAYAKGDPMI 402
Query: 281 -------LGKNKVGPVSASDPKIVPPKRAD--------MKRSMESLIHHFK--------- 316
LGK +VGP + R M + LI + K
Sbjct: 403 TDTVNMVLGKLEVGPEALFSTLGRTAARGIECLQTAGFMMHYYDQLIDNIKTGDLRTANT 462
Query: 317 -LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ--------- 366
L+ + + EAP+G G ++ K +I P +
Sbjct: 463 ELWDPSRWPKEAKGFGYTEAPRGALGHWIHIR-DGKIEDYQIVVPSTWNASPRDANGAVG 521
Query: 367 AMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
A E KG + D + + S D
Sbjct: 522 AYESALKGTPMVDPEQPLEILRTIHSFDPCLACA 555
Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 43/104 (41%)
Query: 18 PAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQE 77
P G LR+ +L V G + RG E +++ + A + +R+ V
Sbjct: 11 PRIEGHLRIEAKLGENNVIEDAFSSGTMWRGIEIILKGRDPRDAWAFAERICGVCTTVHA 70
Query: 78 HAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A VE LGIEIP ++IR L + + HL++
Sbjct: 71 LASVRCVEDALGIEIPENARIIRNLMNATQQTQDHLVHFYHLHA 114
>gi|316931883|ref|YP_004106865.1| nickel-dependent hydrogenase large subunit [Rhodopseudomonas
palustris DX-1]
gi|315599597|gb|ADU42132.1| nickel-dependent hydrogenase large subunit [Rhodopseudomonas
palustris DX-1]
Length = 597
Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats.
Identities = 39/232 (16%), Positives = 64/232 (27%), Gaps = 36/232 (15%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D V R G + RG E +++ + A + R+ V
Sbjct: 27 IEGHLRVEVNVDSSNVIRNAVSTGTMWRGIEVILKGRDPRDAWAFTQRICGVCTGTHALT 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA------------------- 120
AVE L I +P IR + + HL++
Sbjct: 87 SVRAVENALNISVPENANTIRNIMQLALYVHDHLVHFYHLHALDWVDVVSALKADPKATS 146
Query: 121 -------MDVGALTPPLWGFEEREKLMVFYERAS----GSRMHAAYFRPGGVHQDIPPEL 169
+ + R V + G H AY P +
Sbjct: 147 ALAQSISPWPMSSPGYFKDLQIRLTKFVESGQLGPFKNGYWGHPAYKLPPEANLMAVAHY 206
Query: 170 VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVM 221
+E + F + I + G V G + G G G +
Sbjct: 207 LEAL-----DFQKEIVKIHTIYGGKNPHPNWLVG-GVPCSINVDGTGAVGAI 252
Score = 101 bits (253), Expect = 2e-19, Method: Composition-based stats.
Identities = 37/392 (9%), Positives = 81/392 (20%), Gaps = 111/392 (28%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H ++ A+ L + +++++ + G H + G
Sbjct: 189 HPAYKLPPEANLMAVAHYLEALDFQKEIVKIHTIYGGKNPHPNWLVGGVPCSINVDGTGA 248
Query: 172 DIGCWCDSF------------PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWG----- 214
+ + DL+ +K G
Sbjct: 249 VGAINIERLNLVSSIIDQTVAFVEQVYVPDLVAIAGFYKDWLYGGGLSSKSVMSYGDLPE 308
Query: 215 ----------WGFSGVMIRG-----------------SGAAWDLRKS-------QPYECY 240
GV+I G K PY+
Sbjct: 309 YANDYSDKSLMLPRGVIINGNLNEVLPVDLSAPDQIQEFVTHSWYKYADEGKGLHPYDGV 368
Query: 241 SELDF-------------DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKV- 286
+E +F + + + E + R + GK +
Sbjct: 369 TEPNFVLGPNTKGTRTNIEALDESAKYSFLKAPRWKGHAVEVGPLARYIIGYAQGKPEFK 428
Query: 287 ---------------------------GPVSASDPKIVPPKRADMKRSMESLIH---HFK 316
G + + + + S+++ +
Sbjct: 429 EPTEKLLKTLDVPVTALFSTLGRTAARGLECQWAARKLRAAQDKLMASIKAGDLSTANTD 488
Query: 317 LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA---------HLQA 367
+ + EAP+G ++ + + P ++ A
Sbjct: 489 KWHPSSWPKDVKGVGFTEAPRGALAHWVRIKDT-RIDNYQCVVPTTWNGSPRDPQGNIGA 547
Query: 368 MEFLCKGHQLAD------VSAILGSLDIVFGE 393
E +AD + L S D
Sbjct: 548 FEAALLDTPMADPNQPLEIIRTLHSFDPCLAC 579
>gi|257093865|ref|YP_003167506.1| nickel-dependent hydrogenase large subunit [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257046389|gb|ACV35577.1| nickel-dependent hydrogenase large subunit [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
Length = 567
Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E+DG V++ G + RG E ++ + A R+ V A
Sbjct: 13 IEGHLRVDVEVDGGKVKKA-WASGQMWRGVENILIGRDPRDAWAITQRICGVCTTVHALA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE L +E+P+ Q IR + + H+++ +
Sbjct: 72 SVRAVENALQLEVPVNAQYIRNMIILAHAVHDHIVHFYHLSA 113
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 42/378 (11%), Positives = 76/378 (20%), Gaps = 96/378 (25%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H +++ A+ L E + G H GGV + +
Sbjct: 174 HPAMKLAPEVNLIAVVHYLQALEVQRHANKVVSILGGKTPHIQNVVVGGVANALAIDSQA 233
Query: 172 DIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG------------ 219
+ D N V G A G G
Sbjct: 234 VLTVERLLAVKTWIDQLADFVKNVYLIDVAVVGGFYPEWTAIGRGIVDYISVPDIPLDGK 293
Query: 220 ------VMIRGSGAAWDLRKS-----------------------------QPYECYSELD 244
+G K PY+ +
Sbjct: 294 NTQFALPGGHIAGGDLASFKEIKTHNDAYFKDGVSESVKHSWYQGGKGPLHPYKGETRPQ 353
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIV------- 297
+ + + + + + R G + ++V
Sbjct: 354 YTDFQEDGKYSWLKAPTFYDKPMQVGPLPRVLAMVAAGHKPTVDYATHALELVSTIAKTK 413
Query: 298 --------------------PPKRADMKRSMESLI----HHFKLYTEGYHVPVGE--VYA 331
+ ++ R + L+ P GE
Sbjct: 414 VGLEALHSTIGRHAARAVACAVEVDELARQWDLLLASMAKGDLKTFNRPAFPKGEIAGVG 473
Query: 332 AVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLA---- 378
EAP+G +++ D K + P + A E G +A
Sbjct: 474 IHEAPRGVLSHWIVID-DGKIKNYQCVVPTTWNAAPRNEKDEPGAYEACLAGTPVAIPDQ 532
Query: 379 --DVSAILGSLDIVFGEV 394
+V + S D
Sbjct: 533 PLEVLRTVHSFDPCLACA 550
>gi|194333687|ref|YP_002015547.1| nickel-dependent hydrogenase large subunit [Prosthecochloris
aestuarii DSM 271]
gi|194311505|gb|ACF45900.1| nickel-dependent hydrogenase large subunit [Prosthecochloris
aestuarii DSM 271]
Length = 572
Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats.
Identities = 46/382 (12%), Positives = 85/382 (22%), Gaps = 100/382 (26%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H +++ A+ L E +++++ + G H Y G P
Sbjct: 175 HSAYKLPPEVNLLAVAHYLEALEFQKEIVKIHTVFGGKNPHPNYLVGGMACAIDPSRDTA 234
Query: 172 DIGCWCDSFPSALNDIS---------DLLTGNRIFKQRNVNIGTVKL------------- 209
++D DL+ +K G
Sbjct: 235 INMETLSMVKKIIDDTMTFIDQVYIPDLIAIAGFYKDWLYGGGLGNYLCYGDFPERSLED 294
Query: 210 -------------------------------EDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
E+ +S G ++ P
Sbjct: 295 TSSLLWPRGAILNRDLSTIYDVDPRDMNQVTEEVSHSWYSYSSGDDKGLHPWQGETTPNY 354
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKN-------------K 285
+ F+ + + + E + R + G
Sbjct: 355 TGPKPPFEHLDHEKKYSWLKTPRWNNHPMEVGPLARVLLQYAKGDPMIKDTVNMVLGTLD 414
Query: 286 VGPVSASDPKIVPPKRAD--------MKRSMESLIHHFK----------LYTEGYHVPVG 327
VGP + R M LI + K L+
Sbjct: 415 VGPEALYSTLGRTAARGIECRQTAGFMLHFYNELIDNIKKGDYKTANTELWEPSSWPSDV 474
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLA 378
+ + EAP+G G ++ K +I P + A E +G +A
Sbjct: 475 KGFGYTEAPRGALGHWVHIK-NEKIEDYQIVVPSTWNASPRDAEGKVGAYESALRGTPMA 533
Query: 379 D------VSAILGSLDIVFGEV 394
D + + S D
Sbjct: 534 DPEKPLELLRTVHSFDPCLACA 555
Score = 106 bits (266), Expect = 4e-21, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 42/104 (40%)
Query: 18 PAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQE 77
P G LR+ ++ V G + RG E +++ + A + +R+ V
Sbjct: 11 PRIEGHLRIEAQVGENNVIEDAFSTGTMWRGIELILKGRDPRDAWAFAERICGVCTTVHA 70
Query: 78 HAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A VE LGI IP ++IR L + + HL++
Sbjct: 71 LASVRCVEDALGIVIPDNARIIRNLMNATQQTQDHLVHFYHLHA 114
>gi|206890461|ref|YP_002249732.1| hydrogenase-2 large chain [Thermodesulfovibrio yellowstonii DSM
11347]
gi|206742399|gb|ACI21456.1| hydrogenase-2 large chain [Thermodesulfovibrio yellowstonii DSM
11347]
Length = 556
Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats.
Identities = 45/375 (12%), Positives = 90/375 (24%), Gaps = 94/375 (25%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H ++ A+ L + +++++ H F GG+ I PE
Sbjct: 173 HPAYNLPPEANLMAVAHYLEALDWQKEVIKMMAMLGAKNPHPQTFLVGGMAIPIDPESQN 232
Query: 172 DIGCWCDSFPSALNDIS----------DLLTGNRIFKQRNVN--------IGTVKLEDAW 213
I + + D++ DLL +K G +
Sbjct: 233 AINAGTIAALNKYADMAIEFVEKVYIPDLLAVASFYKDWAKYGGNVNFLACGEYPEANGK 292
Query: 214 GWGFSG-----------VMIRGSGAAWDLRKSQPY--------ECYSELDFDIPIGKH-- 252
W +G + + R Y + G
Sbjct: 293 MWLPAGIIKNKNLKEIYPVDHKKIQEYITRSYYKYSKGENAGLHPWDGETTPNYTGPKPP 352
Query: 253 --------GDCYDRYLVRMMEMRESVKIIR-------------QCVNRLLGKNKVGPVSA 291
+ + E + R + V+ ++ K VGP +
Sbjct: 353 YEYLNVDGKYSWGKAPRYEDLPMEVGPLARVLVAYASGHKEVKEAVDMVMKKLGVGPEAL 412
Query: 292 SDPKIVPPKRADM--------KRSMESL----------IHHFKLYTEGYHVPVGEVYAAV 333
R + K + L I + + + +
Sbjct: 413 FSTLGRTAARGIIALVTAYKTKDFINELAANIKKGDYTIANTEKWDPKTWPAEAKGMGWH 472
Query: 334 EAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLAD----- 379
+AP+G Y++ K ++ P +L +E +AD
Sbjct: 473 DAPRGALSHYIVIK-NKKIENYQMVVPSTWNLSPRDNKGVRGPVEEALVNTPVADSKQPL 531
Query: 380 -VSAILGSLDIVFGE 393
+ + S D
Sbjct: 532 ELLRTIHSFDPCMAC 546
Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats.
Identities = 52/343 (15%), Positives = 93/343 (27%), Gaps = 47/343 (13%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR + V+ + RG E +++ + +A + RL V A
Sbjct: 12 IEGHLRCEAVVADGKVKDAYSSC-TMWRGIEVIMKGRDPREAWVFVQRLCGVCTTVHAIA 70
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM------------------ 121
AVE L I++P LIR L + H+++
Sbjct: 71 SIRAVEDALKIKVPRNADLIRNLIMANQCVQDHVIHFYHLHALDWVDVVSALKADPAKTS 130
Query: 122 --------DVGALTPPLWGFEEREKLMVFYERAS----GSRMHAAYFRPGGVHQDIPPEL 169
T +++ K V + G H AY P +
Sbjct: 131 ELAKTISPWPNNSTTYFKAVQDKLKAFVERGQLGIFSNGYWGHPAYNLPPEANLMAVAHY 190
Query: 170 VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAW 229
+E D + ++ L N + V + ++ +G
Sbjct: 191 LEA----LDWQKEVIKMMAMLGAKNPHPQTFLVGGMAIPIDPESQ------NAINAGTIA 240
Query: 230 DLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPV 289
L K IP + + + + G +
Sbjct: 241 ALNKYADMAIEFVEKVYIPDLLAVASFYKDWAKYGGNVNFLACGEYPEANGKMWLPAGII 300
Query: 290 SASDPKIVPPKRADMKRSMESLIHHFKLYTEGY----HVPVGE 328
+ K + P D K+ E + + Y++G H GE
Sbjct: 301 KNKNLKEIYP--VDHKKIQEYITRSYYKYSKGENAGLHPWDGE 341
>gi|330446147|ref|ZP_08309799.1| quinone-reactive Ni/Fe-hydrogenase large chain [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
gi|328490338|dbj|GAA04296.1| quinone-reactive Ni/Fe-hydrogenase large chain [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
Length = 567
Score = 113 bits (284), Expect = 4e-23, Method: Composition-based stats.
Identities = 48/357 (13%), Positives = 78/357 (21%), Gaps = 90/357 (25%)
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
L+ L E + G H GGV + + F
Sbjct: 190 LSHYLKALEVQRVGAEMMAIWGGKNPHPQSIVVGGVTCVRDMLDPARLQEFKQKFAHVAE 249
Query: 186 DIS-----DLLTGNRIFKQRNVNIGTVKLEDAWGW-----------GFSGVM-------- 221
I D+L F + +G + SGV+
Sbjct: 250 FIERAYQADILMAASAFGKEPSVLGGCNISTFMCSESIQLNEETHLFTSGVIRNKDITKA 309
Query: 222 ------IRGSGAAWDLR----KSQPYECYSELDFDIPIGKH-------------GDCYDR 258
+ PY+ + + I + + +
Sbjct: 310 EDVDLSLIAEDVTHSWYNADKPQHPYDGTTIPEHTPFIERDTLEGKRPTINEAGKYSWVK 369
Query: 259 YLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR-----------ADMKRS 307
E E + VN G V PV K A M +
Sbjct: 370 SPRYNGEPVEVGPLATIAVNYAKGNPYVVPVVNEFLKTTGLPAGALFTTLGRTAARMLHT 429
Query: 308 M--------------ESLIHHFKLYTEGYHVPVGE--VYAAVEAPKGEFGVYLISDGGNK 351
+ +L Y E P E +EAP+G ++
Sbjct: 430 LIIARNGLTTFESMVNNLNSDQTTYIEPTIDPAKEYKGVGVIEAPRGLLSHWIRIK-DGL 488
Query: 352 PYRCKIRAPGYAH---------LQAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
+ P + + E G +L D V ++ S D
Sbjct: 489 VENYQAVVPTTWNASPIDGNGKIAPYEASLVGLKLEDPTKPLEVLRVIHSFDPCMAC 545
Score = 97.7 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 40/101 (39%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +ELD V L RG E +++ +T R+ V +
Sbjct: 13 IEGHLRIEVELDANNVIEKAYASSTLFRGLEIIMKGRTPYDTGLLMQRICGVCTSSHYLC 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
LAVE + ++PI + IR L + H+++
Sbjct: 73 GTLAVENAINAQVPINAKYIRSLILTSLEMHDHIVHFYLLH 113
>gi|6730443|pdb|1H2R|L Chain L, Three-Dimensional Structure Of Ni-Fe Hydrogenase From
Desulfivibrio Vulgaris Miyazaki F In The Reduced Form At
1.4 A Resolution
Length = 534
Score = 113 bits (284), Expect = 4e-23, Method: Composition-based stats.
Identities = 41/356 (11%), Positives = 82/356 (23%), Gaps = 75/356 (21%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDI--PPEL 169
H ++ A L + K H + GGV P+
Sbjct: 177 HPAYYLDPETNLIATAHYLEALRLQVKAARAMAVFGAKNPHTQFTVVGGVTCYDALTPQR 236
Query: 170 VEDIGCWCDSFPSALNDIS--DLLTGNRIFKQRNVNIG---------------------- 205
+ + + ++++ DLL +K G
Sbjct: 237 IAEFEALWKETKAFVDEVYIPDLLVVAAAYKDWTQYGGTDNFITFGEFPKDEYDLNSRFF 296
Query: 206 ---TVKLEDAWGWGFSGVMIRGSGAAWDLRK----SQPYECYSELDFDIPIGKHGDCYDR 258
V D M + P++ ++ + G + +
Sbjct: 297 KPGVVFKRDFKNIKPFDKMQIEEHVRHSWYEGAEARHPWKGQTQPKYTDLHGDDRYSWMK 356
Query: 259 YLVRMMEMRESVKIIRQCVNRLLGKNKVGPV------------------------SASDP 294
M E E+ + + + G KV V +
Sbjct: 357 APRYMGEPMETGPLAQVLIAYSQGHPKVKAVTDAVLAKLGVGPEALFSTLGRTAARGIET 416
Query: 295 KIVPPKRADMKRSMESLIHHFKLY--TEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKP 352
++ M + + I E V AP+G ++ K
Sbjct: 417 AVIAEYVGVMLQEYKDNIAKGDNVICAPWEMPKQAEGVGFVNAPRGGLSHWIRI-EDGKI 475
Query: 353 YRCKIRAPGYA---------HLQAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
++ P ++ +E G +AD + + S D
Sbjct: 476 GNFQLVVPSTWTLGPRCDKNNVSPVEASLIGTPVADAKRPVEILRTVHSFDPCIAC 531
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 1/105 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E++ V+ L RG E +++ + A + R V A
Sbjct: 15 IEGHLRIEVEVENGKVKNA-YSSSTLFRGLEIILKGRDPRDAQHFTQRTCGVCTYTHALA 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
V+ +G+ IP IR L + H+++
Sbjct: 74 STRCVDNAVGVHIPKNATYIRNLVLGAQYLHDHIVHFYHLHALDF 118
>gi|20378803|gb|AAM20990.1| hydrogenase large subunit [Bradyrhizobium sp. UPM860]
Length = 186
Score = 113 bits (284), Expect = 4e-23, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 42/102 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R+ + +D + V R G + RG E +++ + A + +R+ +
Sbjct: 26 IEGHMRVEVNVDADNVIRNAVSTGTMWRGIEVILKNRDPRDAWAFTERICGICTGTHALT 85
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI IP IR L ++ H+++
Sbjct: 86 SVRAVENALGITIPENANSIRNLMQLALQVHDHVVHFYHLHA 127
>gi|311279769|ref|YP_003942000.1| nickel-dependent hydrogenase large subunit [Enterobacter cloacae
SCF1]
gi|308748964|gb|ADO48716.1| nickel-dependent hydrogenase large subunit [Enterobacter cloacae
SCF1]
Length = 564
Score = 113 bits (284), Expect = 4e-23, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++G V + G + RG E++++ A R+ V A
Sbjct: 13 IEGHLRIDCEIEGGKVVKA-WSSGTMWRGMEEIVKGNDPRDAWMIVQRICGVCTTIHALA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LG+E+P+ Q IR + + I H+++ +
Sbjct: 72 SVRAVENALGMEVPVNAQYIRNIIAAAHSIHDHIVHFYQLSA 113
Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats.
Identities = 45/387 (11%), Positives = 80/387 (20%), Gaps = 93/387 (24%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYF--- 156
L H +++ A+ L E + G H
Sbjct: 162 GQLGIFANGYWGHPAMALPPEVNLIAVAHYLQALECQRDANRIVAVLGGKTPHIQNLAVG 221
Query: 157 -RPGGVHQDIPPELVEDIGCWCDSFPSALNDISD---------LLTGNRIFKQRNVNIGT 206
++ D P L + + SF L D + + + +
Sbjct: 222 GVANPINLDSPGVLNLERLMYLKSFIDKLGDFIEQVYLVDSAVIAAHYPQWLEMGKGADC 281
Query: 207 VKLEDAWGWGFSGVM---------------------------IRGSGAAWDLRKSQPYEC 239
G I SG + QP
Sbjct: 282 YLCVPELPVDRKGDTFLLPGGYLEKGVFRPIASQRDDYLLKGIEESGKHAWYQDDQPLAP 341
Query: 240 YSELDFDIPIGKHGD---CYDRYLVRMMEMRESVKIIRQCVNRLLGKNK----------- 285
+ L G D + + E + + G
Sbjct: 342 WEGLTRPNYTGWQEDGKYSWVKAPTFYGNAVEMGPLAWLLCSLQTGHQPTKDTFARVNAS 401
Query: 286 -----------------VGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV-- 326
+G V + ++ + + K E + P
Sbjct: 402 YKALTGNALTTEQLPSTLGRVVGRAVHACVLHQTLGEQWQALVTNIGKGDHETFIPPNIP 461
Query: 327 --GE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCK 373
GE +EAP+G +++ K + P + E
Sbjct: 462 LNGEVRGVGFIEAPRGALSHWVVIR-DGKIANYQAVVPSTWNAGPRNFNDEPGPYERSLV 520
Query: 374 GHQLAD------VSAILGSLDIVFGEV 394
G +AD V + S D
Sbjct: 521 GTPVADPAKPLEVVRTIHSFDPCMSCA 547
>gi|295107010|emb|CBL04553.1| Ni,Fe-hydrogenase I large subunit [Gordonibacter pamelaeae
7-10-1-b]
Length = 548
Score = 113 bits (284), Expect = 4e-23, Method: Composition-based stats.
Identities = 46/339 (13%), Positives = 81/339 (23%), Gaps = 73/339 (21%)
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
L + + K G H PGG + ++D+ D +
Sbjct: 189 HYLEALQMQAKASQVSAIIGGKMPHVMTLIPGGTAFVPTDQKLDDLKYLVDEIYDWVEAT 248
Query: 188 S--DLLTGNRIFKQ---------RNVNIGTVKLEDAWGWGFSGVMIRGS----------- 225
D L + R V G + E M
Sbjct: 249 MIPDTLAIAPYYIDALNWGKGCGRYVAWGVFENESMELKDRYLPMGVIDDKLNLSDVKEE 308
Query: 226 ------GAAWDLRKSQPYECY--SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIR--- 274
G +W + Y +E +F + + + E+ + R
Sbjct: 309 LITEYMGHSWYKGEETYTSPYFVTEPEFTSYDVNDRYTWVKCPAYDGKPYEAGGLSRVLA 368
Query: 275 --------------QCVNRLLGKNKVGPVSASDPKIVPPKRAD------MKRSMESLIHH 314
+ L ++G ++ + + MK + L
Sbjct: 369 AYKRNVPFIVEQVDGLLEALGAPGQIGVAQSTLGRTAVRQIETLYIAGLMKDWVAELCEA 428
Query: 315 FKL-YTEGYHVPV---GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL----- 365
K +E + P G EAP+G K +I P +L
Sbjct: 429 VKSGDSEYFREPATITGSGTGFWEAPRGALYHSEEVK-DGKITGYQIIIPTTWNLAPKNA 487
Query: 366 ----QAMEFLCKGHQLADVS------AILGSLDIVFGEV 394
ME G+ + D+ + S D
Sbjct: 488 NGESGPMEQALIGNPVGDIEKPINALRTVHSFDPCTACA 526
Score = 106 bits (266), Expect = 5e-21, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E+ V G RG E ++E +T A R+ V P++ H+
Sbjct: 12 IEGHLRVEMEVTNGKVSDA-WVSGGCFRGMEMVVENRTPEDAAQIVQRICGVCPVSHAHS 70
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
A+A EK GI+I ++IR L + SH+L A
Sbjct: 71 SAIAAEKAYGIKISNNARIIRNLLEGAQFLHSHILWFYNLAALDY 115
>gi|27382052|ref|NP_773581.1| uptake hydrogenase large subunit [Bradyrhizobium japonicum USDA
110]
gi|123744|sp|P12636|MBHL_BRAJA RecName: Full=Uptake hydrogenase large subunit; AltName:
Full=Hydrogenlyase; AltName: Full=Membrane-bound
hydrogenase large subunit
gi|152102|gb|AAA26219.1| uptake hydrogenase (hupL) [Bradyrhizobium japonicum]
gi|27355222|dbj|BAC52206.1| uptake hydrogenase large subunit [Bradyrhizobium japonicum USDA
110]
Length = 596
Score = 113 bits (284), Expect = 4e-23, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 42/102 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R+ + +D + V R G + RG E +++ + A + +R+ V
Sbjct: 26 IEGHMRVEVNVDADNVIRNAVSTGTMWRGIEVILKNRDPRDAWAFTERICGVCTGTHALT 85
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI IP IR L ++ H+++
Sbjct: 86 SVRAVENALGITIPENANSIRNLMQLALQVHDHVVHFYHLHA 127
Score = 98.1 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/383 (6%), Positives = 71/383 (18%), Gaps = 111/383 (28%)
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
++ A+ L + +++++ + G H + G +
Sbjct: 197 ANLMAVAHYLEALDFQKEIVKIHTIFGGKNPHPNWLVGGVPCPINVDGTGAVGAINMERL 256
Query: 181 ------------PSALNDISDLLTGNRIFKQRNVNIG----------------------- 205
+ + + D+ +K G
Sbjct: 257 NLISSIIDRLIEFNEMVYLPDVAAIGSFYKDWLYGGGLSGQSVLAYGDVPEHANDYSAKS 316
Query: 206 -----------------------------TVKLEDAWGWGFSGVMIRGSGAAWDLRKSQP 236
V + + G P
Sbjct: 317 LKLPRGAIINGNLSEVFPVDHANPDEIQEFVVHSWYKYPDETKGLHPWDGVTEPNYVLGP 376
Query: 237 YECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQC-------------------- 276
++ + + + E + R
Sbjct: 377 NAKGTKTAIEQLDEGGKYSWIKAPRWKGHAMEVGPLARWVVGYAQNKSEFKDPVDKFLRD 436
Query: 277 -----------VNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP 325
+ R + + + K ++ +S + +
Sbjct: 437 LNLPTSALFSTLGRTAARALESVWAGRQMRYFQDKLVANIKAGDSSTANVDKWKPESWPK 496
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA---------HLQAMEFLCKGHQ 376
+ EAP+G ++ K + P ++ A E
Sbjct: 497 EAKGVGFTEAPRGALAHWIKIKDT-KIDNYQCVVPTTWNGSPRDPKGNIGAFEASLMNTP 555
Query: 377 L------ADVSAILGSLDIVFGE 393
+ ++ + S D
Sbjct: 556 MVNPEQPLEILRTIHSFDPCLAC 578
>gi|220915625|ref|YP_002490929.1| nickel-dependent hydrogenase large subunit [Anaeromyxobacter
dehalogenans 2CP-1]
gi|219953479|gb|ACL63863.1| nickel-dependent hydrogenase large subunit [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 577
Score = 113 bits (284), Expect = 4e-23, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E+DG V+ G + RG E +++ + A + R+ V A
Sbjct: 13 IEGHLRIDVEVDGGAVKNA-WSSGTMWRGIETILQGRDPRDAWIFTQRICGVCTTVHAIA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+VE LG+EIP+ QLIR L + H+++ +
Sbjct: 72 SVRSVENALGLEIPLNAQLIRNLIVTAHTLHDHIVHFYQLSA 113
Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 14/98 (14%), Positives = 26/98 (26%), Gaps = 20/98 (20%)
Query: 317 LYTEGYHVPVG--EVYAAVEAPKGEFGVYLISDGGN---KPYRCKIRAPGYAH------- 364
++ G + EAP+G + + + K + P +
Sbjct: 463 WVDPMANLKPGIYKGVGFHEAPRGTLSHWCVIEADKKGMKLKNYQAVVPSTWNAGPRDAS 522
Query: 365 --LQAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
L E G+ +AD + S D
Sbjct: 523 GALGPYEKSLVGNPIADPKLPLEALRTIHSFDPCLACA 560
>gi|23012583|ref|ZP_00052632.1| COG0374: Ni,Fe-hydrogenase I large subunit [Magnetospirillum
magnetotacticum MS-1]
Length = 567
Score = 113 bits (284), Expect = 4e-23, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E+DG V + G + RG E ++ + A R+ V
Sbjct: 13 IEGHLRIDVEVDGGKVTKA-WSSGQMWRGVELILLGRDPRDAWAITQRICGVCTTVHAMT 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE L +E+P+ Q IR + I H+++ +
Sbjct: 72 SVRAVENALNLEVPVNAQFIRNMIISAHAIHDHIVHFYHLSA 113
Score = 98.9 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 28/228 (12%), Positives = 59/228 (25%), Gaps = 52/228 (22%)
Query: 218 SGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGD---CYDRYLVRMMEMRESVKII- 273
GV A +D K P + D + + + + +
Sbjct: 325 DGVEEGVKHAWYDYSKPGPLHPFKGETKPNYTDFQDDGKYSWLKAPTFYGKRAQVGPLAS 384
Query: 274 ----------------RQCVN--------RLLGKNKVGPVSASDPKIVP--PKRADMKRS 307
+ ++ ++ + + V M ++
Sbjct: 385 VLAGVASGHQPTIGYATKVLDTASSLLGSKIPLAALHSTIGRHAARAVRSGVMAEVMVQN 444
Query: 308 MESLIHHF-KLYTEGYHVP---VGE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
++LI + K T+ ++ P GE Y EAP+G + + K + P
Sbjct: 445 WQALIDNIGKGDTKTFNKPTFPKGEVMGYGFHEAPRGLLSHWTVIR-DGKIANYQCVVPS 503
Query: 362 YA---------HLQAMEFLCKGHQLADVS------AILGSLDIVFGEV 394
++ E + +AD + S D
Sbjct: 504 TWNAGPRDDNDNIGPYEASLMDNPIADAELPLEVLRTVHSFDPCLACA 551
>gi|148264003|ref|YP_001230709.1| nickel-dependent hydrogenase, large subunit [Geobacter
uraniireducens Rf4]
gi|146397503|gb|ABQ26136.1| nickel-dependent hydrogenase, large subunit [Geobacter
uraniireducens Rf4]
Length = 560
Score = 113 bits (284), Expect = 4e-23, Method: Composition-based stats.
Identities = 45/371 (12%), Positives = 82/371 (22%), Gaps = 89/371 (23%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H +++ A+ L + + K G H GGV I E +
Sbjct: 174 HPAMKLPPEVNLLAVAHYLKALDYQRKAAQAVAILGGKNPHVQNLVVGGVATAINMENLA 233
Query: 172 DIGCWCDSFPSALND----------ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS--- 218
+ + L + D+L +K V A
Sbjct: 234 TLNMERLVYLKTLMEETRDFVQKVYYPDMLAIASAYKDWFKYGAGVTNYLAVPEFPEDTR 293
Query: 219 -------------GVMIRGSGAAWDLRKS--------------------QPYECYSELDF 245
G + + P+E ++ ++
Sbjct: 294 NTKFALNGGIITAGNLAAMRPVKDHHDEYLINNVKESVAHAWYEGTSSLHPWEGETKPNY 353
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKV-------------GPVSAS 292
+ + + + + G KV G
Sbjct: 354 TDFKENEKYSWCKAPRLDGKPVQVGPPAQIFAAYAAGNPKVKKLVDSANSTIGIGMKDYH 413
Query: 293 DPKIVPPKRADMKRSMESL------------IHHFKLYTEGYHVPVGE--VYAAVEAPKG 338
RA M + K+Y +P GE EAP+G
Sbjct: 414 STMGRLLARAQRAHLMADISLDNLDKLIANIASGDKVYANHTEIPKGEYRGVGFHEAPRG 473
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLA------DVSAI 383
+++ K + P + L E G+ +A +V
Sbjct: 474 TLSHWIVIK-NRKIENYQAVVPSTWNASPRDEKGALGPYEASLVGNPVAQADKPLEVLRT 532
Query: 384 LGSLDIVFGEV 394
+ S D
Sbjct: 533 VHSFDPCIACA 543
Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E++G V + RG E +++ + A + R V +
Sbjct: 13 IEGHLRIDVEVNGGKVSNA-WSSAQMWRGIEVILKGRPPEDAWSFAQRFCGVCTTVHAIS 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+VE L +E+P+ Q IR + + H+++ +
Sbjct: 72 SIRSVEHALKVEVPLNAQYIRNIMIAQHSVQDHIVHFYHLSA 113
>gi|83310746|ref|YP_421010.1| Ni,Fe-hydrogenase I large subunit [Magnetospirillum magneticum
AMB-1]
gi|82945587|dbj|BAE50451.1| Ni,Fe-hydrogenase I large subunit [Magnetospirillum magneticum
AMB-1]
Length = 567
Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E+DG V + G + RG E ++ + A R+ V
Sbjct: 13 IEGHLRIDVEVDGGKVTKA-WSSGQMWRGVELILLGRDPRDAWAITQRICGVCTTVHAMT 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE L +E+P+ Q IR + I H+++ +
Sbjct: 72 SVRAVENALNLEVPVNAQFIRNMIISAHAIHDHIVHFYHLSA 113
Score = 99.2 bits (246), Expect = 1e-18, Method: Composition-based stats.
Identities = 28/228 (12%), Positives = 59/228 (25%), Gaps = 52/228 (22%)
Query: 218 SGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGD---CYDRYLVRMMEMRESVKII- 273
GV A ++ K P Y D + + + + +
Sbjct: 325 DGVEEGVKHAWYEYSKPGPLHPYKGETKPAYTDFQDDGKYSWLKAPTFYGKRAQVGPLAS 384
Query: 274 ----------------RQCVN--------RLLGKNKVGPVSASDPKIVP--PKRADMKRS 307
+ ++ ++ + + V M ++
Sbjct: 385 VLAGVAAGHQPTIGYATKVLDTASSLLGSKIPLAALHSTIGRHAARAVRSGVMAEVMVQN 444
Query: 308 MESLIHHF-KLYTEGYHVP---VGE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
++LI + K T+ ++ P GE Y EAP+G + + K + P
Sbjct: 445 WQALIDNIGKGDTKTFNKPTFPKGEVMGYGFHEAPRGLLSHWTVIR-DGKIANYQCVVPS 503
Query: 362 YA---------HLQAMEFLCKGHQLADVS------AILGSLDIVFGEV 394
++ E + +AD + S D
Sbjct: 504 TWNAGPRDDSDNIGPYEASLMDNPIADAELPLEVLRTVHSFDPCLACA 551
>gi|197120928|ref|YP_002132879.1| nickel-dependent hydrogenase large subunit [Anaeromyxobacter sp. K]
gi|196170777|gb|ACG71750.1| nickel-dependent hydrogenase large subunit [Anaeromyxobacter sp. K]
Length = 577
Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E+DG V+ G + RG E +++ + A + R+ V A
Sbjct: 13 IEGHLRIDVEVDGGAVKNA-WSSGTMWRGIETILQGRDPRDAWIFTQRICGVCTTVHAIA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+VE LG+EIP+ QLIR L + H+++ +
Sbjct: 72 SVRSVENALGLEIPLNAQLIRNLIVTAHTLHDHIVHFYQLSA 113
Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 14/98 (14%), Positives = 26/98 (26%), Gaps = 20/98 (20%)
Query: 317 LYTEGYHVPVG--EVYAAVEAPKGEFGVYLISDGGN---KPYRCKIRAPGYAH------- 364
++ G + EAP+G + + + K + P +
Sbjct: 463 WVDPMANLKPGIYKGVGFHEAPRGTLSHWCVIEADKKGMKLKNYQAVVPSTWNAGPRDAS 522
Query: 365 --LQAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
L E G+ +AD + S D
Sbjct: 523 GALGPYEKSLVGNPIADPKLPLEALRTIHSFDPCLACA 560
>gi|86156906|ref|YP_463691.1| nickel-dependent hydrogenase, large subunit [Anaeromyxobacter
dehalogenans 2CP-C]
gi|85773417|gb|ABC80254.1| Nickel-dependent hydrogenase, large subunit [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 577
Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E+DG V+ G + RG E +++ + A + R+ V A
Sbjct: 13 IEGHLRIDVEVDGGAVKNA-WSSGTMWRGIETILQGRDPRDAWIFTQRICGVCTTVHAIA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+VE LG+EIP+ QLIR L + H+++ +
Sbjct: 72 SVRSVENALGLEIPLNAQLIRNLIVTAHTLHDHIVHFYQLSA 113
Score = 92.7 bits (229), Expect = 9e-17, Method: Composition-based stats.
Identities = 14/98 (14%), Positives = 26/98 (26%), Gaps = 20/98 (20%)
Query: 317 LYTEGYHVPVG--EVYAAVEAPKGEFGVYLISDGGN---KPYRCKIRAPGYAH------- 364
++ G + EAP+G + + + K + P +
Sbjct: 463 WVDPMANLKPGIYKGVGFHEAPRGTLSHWCVIEADKKGMKLKNYQCVVPSTWNAGPRDAS 522
Query: 365 --LQAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
L E G+ +AD + S D
Sbjct: 523 GTLGPYEKSLVGNPIADPKLPLEALRTIHSFDPCLACA 560
>gi|78187306|ref|YP_375349.1| hydrogenase large chain [Chlorobium luteolum DSM 273]
gi|78167208|gb|ABB24306.1| hydrogenase large chain [Chlorobium luteolum DSM 273]
Length = 572
Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 42/104 (40%)
Query: 18 PAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQE 77
P G LR+ L+ V G + RG E +++ + +A + +R+ V
Sbjct: 11 PRIEGHLRIEATLNDSNVIENAYSTGTMWRGIEVILKGRDPREAWAFTERICGVCTTVHA 70
Query: 78 HAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A VE LGI +P Q+IR L + HL++
Sbjct: 71 LASVRCVEDALGITVPKNAQIIRNLMNATQVTQDHLVHFYHLHA 114
Score = 106 bits (266), Expect = 4e-21, Method: Composition-based stats.
Identities = 41/382 (10%), Positives = 81/382 (21%), Gaps = 100/382 (26%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H +++ A+ L + +++++ + G H Y G P +
Sbjct: 175 HPAYKLPPEVNLIAVAHYLEALDFQKEIVKIHTIFGGKNPHPNYLVGGMACAIDPEKDTA 234
Query: 172 DIGCWCDSFPSALNDIS---------DLLTGNRIFKQRNVNIGTVKL------------- 209
++D DL+ +K G
Sbjct: 235 INIEQLAMVKKIIDDTITFIDQVYIPDLIAIAGYYKGWLHGGGLGNYLSYGDFPETTLED 294
Query: 210 -------------------------------EDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
E+ ++ G ++ P
Sbjct: 295 FRTLLWPRGVILNKDLSTVLDVDPRDVSQITEEVSHSWYTYTGGDAKGLHPWEGETSPAY 354
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNK------------- 285
+ F + + E + R +
Sbjct: 355 TGPKPPFKHLDTDKKYSWLKTPRWNNHAMEVGPLARVLIAYAKDDPMIKDTVGLVLSKLA 414
Query: 286 VGPVSASDPKIVPPKRAD--------MKRSMESLIHHFK----------LYTEGYHVPVG 327
VGP + R M+ + LI + K +
Sbjct: 415 VGPEALFSTLGRTAARGIECKQTAGFMRHYYDQLIANIKTGDYQTFNSERWEPSSWPKEC 474
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQL- 377
+ EAP+G G ++ K +I P + A E G +
Sbjct: 475 RGFGYTEAPRGSLGHWIEI-EDQKIKEYQIVVPSTWNASPRDANGVAGAYESALAGTPMI 533
Query: 378 -----ADVSAILGSLDIVFGEV 394
+V + S D
Sbjct: 534 KPAEPLEVLRTVHSFDPCLACA 555
>gi|4558287|pdb|1H2A|L Chain L, Single Crystals Of Hydrogenase From Desulfovibrio Vulgaris
gi|145094|gb|AAA23370.1| [NiFe] hydrogenase large subunit [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 567
Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats.
Identities = 41/356 (11%), Positives = 82/356 (23%), Gaps = 75/356 (21%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDI--PPEL 169
H ++ A L + K H + GGV P+
Sbjct: 195 HPAYYLDPETNLIATAHYLEALRLQVKAARAMAVFGAKNPHTQFTVVGGVTCYDALTPQR 254
Query: 170 VEDIGCWCDSFPSALNDIS--DLLTGNRIFKQRNVNIG---------------------- 205
+ + + ++++ DLL +K G
Sbjct: 255 IAEFEALWKETKAFVDEVYIPDLLVVAAAYKDWTQYGGTDNFITFGEFPKDEYDLNSRFF 314
Query: 206 ---TVKLEDAWGWGFSGVMIRGSGAAWDLRK----SQPYECYSELDFDIPIGKHGDCYDR 258
V D M + P++ ++ + G + +
Sbjct: 315 KPGVVFKRDFKNIKPFDKMQIEEHVRHSWYEGAEARHPWKGQTQPKYTDLHGDDRYSWMK 374
Query: 259 YLVRMMEMRESVKIIRQCVNRLLGKNKVGPV------------------------SASDP 294
M E E+ + + + G KV V +
Sbjct: 375 APRYMGEPMETGPLAQVLIAYSQGHPKVKAVTDAVLAKLGVGPEALFSTLGRTAARGIET 434
Query: 295 KIVPPKRADMKRSMESLIHHFKLY--TEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKP 352
++ M + + I E V AP+G ++ K
Sbjct: 435 AVIAEYVGVMLQEYKDNIAKGDNVICAPWEMPKQAEGVGFVNAPRGGLSHWIRI-EDGKI 493
Query: 353 YRCKIRAPGYA---------HLQAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
++ P ++ +E G +AD + + S D
Sbjct: 494 GNFQLVVPSTWTLGPRCDKNNVSPVEASLIGTPVADAKRPVEILRTVHSFDPCIAC 549
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 1/105 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E++ V+ L RG E +++ + A + R V A
Sbjct: 33 IEGHLRIEVEVENGKVKNA-YSSSTLFRGLEIILKGRDPRDAQHFTQRTCGVCTYTHALA 91
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
V+ +G+ IP IR L + H+++
Sbjct: 92 STRCVDNAVGVHIPKNATYIRNLVLGAQYLHDHIVHFYHLHALDF 136
>gi|323097797|emb|CBJ19313.1| [Ni/Fe] hydrogenase [uncultured bacterium]
Length = 368
Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++G V + G + RG E +++ + A + R+ V A
Sbjct: 13 IEGHLRIDAEVEGGEVTKA-WSSGQMWRGIETILKGRDPRDAWLFTQRICGVCTTVHALA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE L +EIP+ Q IR + I + H+++ +
Sbjct: 72 SVRAVENALNLEIPLNAQYIRNIVMAIHALQDHIVHFYVLSA 113
>gi|20378819|gb|AAM20998.1| hydrogenase large subunit [Rhizobium tropici]
Length = 184
Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 42/102 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R+ + +D + + R G + RG E +++ + A + +R+ V
Sbjct: 24 IEGHMRVEVNVDEDNIIRNAVSTGTMWRGIEVILKNRDPRDAWAFTERICGVCTGTHALT 83
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI IP IR L ++ H+++
Sbjct: 84 SVRAVENALGITIPENANSIRNLMQLALQVHDHVVHFYHLHA 125
>gi|332663792|ref|YP_004446580.1| cytochrome-c3 hydrogenase [Haliscomenobacter hydrossis DSM 1100]
gi|332332606|gb|AEE49707.1| Cytochrome-c3 hydrogenase [Haliscomenobacter hydrossis DSM 1100]
Length = 572
Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats.
Identities = 46/383 (12%), Positives = 94/383 (24%), Gaps = 101/383 (26%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H +++ L L E +++++ G H Y G ++
Sbjct: 174 HSAYKLPPEVNLIGLAHYLEALEWQKEIVKVQTIFGGKNPHPNYLVGGMACAIGLDDVSA 233
Query: 172 DIGCWCDSFPSALND---------ISDLLTGNRIFKQRNVNIGTV-------------KL 209
L+D I DLL +K G +
Sbjct: 234 INAERLAYIKQLLDDGKRFIEQVYIPDLLAVASFYKDWGAIGGGLGNYLVYGDLPTNGFR 293
Query: 210 EDAWGWGFSGVMI-------------------------RGSGAAWDLRKSQPYECYSELD 244
+ + +G ++ S D P++ ++L+
Sbjct: 294 DPSSFKFPAGAILNKDLSKVHEVNMREDSEIQEFINKSWYSYEGGDNVGLHPWKGETKLN 353
Query: 245 FDIPIGKH-------GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIV 297
+ P + + + E + R V G + V S K +
Sbjct: 354 YTGPKPPYEHLNTEEKYSFLKTPRWKGHAMEVGPLARVLVGYAKGIPEFKEVVDSALKHL 413
Query: 298 PPKRADMKRSM---------------------ESLIHHFKL----------YTEGYHVPV 326
+ ++ + LI + KL +
Sbjct: 414 DVPATALFSTLGRTAARGLEAQLVANWAQEFYDQLIQNIKLGDTRMANTEKFQPETWPAQ 473
Query: 327 GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQL 377
+ EAP+G G +++ K ++ P + + A E +
Sbjct: 474 AKGVGHAEAPRGALGHWIVI-EDQKIANYQLVVPTTWNASPRDPQGQMSAYEAALMDTPI 532
Query: 378 AD------VSAILGSLDIVFGEV 394
AD + + S D
Sbjct: 533 ADPERPVEILRTVHSFDPCMACA 555
Score = 96.9 bits (240), Expect = 5e-18, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ ++ V V G + R E+++ + A Y R+ V A
Sbjct: 13 IEGHLRIEADIQNGKVSDV-YSAGTMVRLLEEILRGRDPRDAWAYVGRVCGVCTSTHSLA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
VE L I +P +++R L + H+++
Sbjct: 72 SVRTVEDALDIVVPPNAEIVRNLMFATLYMHDHVVHFYHLHA 113
>gi|254166913|ref|ZP_04873767.1| Respiratory-chain NADH dehydrogenase, 49 Kd subunit domain protein
[Aciduliprofundum boonei T469]
gi|289596450|ref|YP_003483146.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Aciduliprofundum
boonei T469]
gi|197624523|gb|EDY37084.1| Respiratory-chain NADH dehydrogenase, 49 Kd subunit domain protein
[Aciduliprofundum boonei T469]
gi|289534237|gb|ADD08584.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Aciduliprofundum
boonei T469]
Length = 412
Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats.
Identities = 66/370 (17%), Positives = 120/370 (32%), Gaps = 52/370 (14%)
Query: 26 LILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVE 85
+ GE ++ + P++G R K +A+PY +R+ ++ + V
Sbjct: 89 FKIATCGERIDSLVPYLGFKKREMLNKAIGKEPWEALPYVERITGQFSISYASLFYGLV- 147
Query: 86 KLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYER 145
GI+ P + E+ R+ +H+ + A D + E+ + +
Sbjct: 148 --FGIDCPD----YLLFAKELERVHNHIWVMHKLAGDASQKVANMHLAAITEEFLRLNLK 201
Query: 146 ASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIG 205
G R + R G P + + ++ L+ +RIF R
Sbjct: 202 TLGHRYGMNFLRTG-------PRKYDKFHENLSELKKWFLETAEELSDSRIFIDRLQTTC 254
Query: 206 TVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMME 265
+K D G+ R SG D RK ++ D+ P+ +GD R+L+R+ E
Sbjct: 255 ILKKLDILRNDGVGIPARASGVLRDARKIGIFKDL-YGDYSPPMESYGDSLSRFLIRVKE 313
Query: 266 MRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP 325
+ +S ++ S+E K +
Sbjct: 314 VEKSF--------------------------------EILESIELKECKVKRNAK----K 337
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILG 385
G EAP G+ + + + IR P A +G+ D L
Sbjct: 338 DGFYEGMAEAPPGDIYMGVKI-EKGRVREIIIRPPSLVMYHAFSVGIRGNVFTDFPFALD 396
Query: 386 SLDIVFGEVD 395
S F + D
Sbjct: 397 SFGAYFSDAD 406
>gi|195927492|pdb|3CUS|Q Chain Q, Structure Of A Double IlePHE MUTANT OF NI-Fe Hydrogenase
Refined At 2.2 Angstrom Resolution
gi|195927494|pdb|3CUS|R Chain R, Structure Of A Double IlePHE MUTANT OF NI-Fe Hydrogenase
Refined At 2.2 Angstrom Resolution
gi|195927496|pdb|3CUS|S Chain S, Structure Of A Double IlePHE MUTANT OF NI-Fe Hydrogenase
Refined At 2.2 Angstrom Resolution
Length = 549
Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats.
Identities = 46/372 (12%), Positives = 90/372 (24%), Gaps = 83/372 (22%)
Query: 102 LYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGV 161
+++ + H +D+ A L + K G H + GG
Sbjct: 178 IFTNAYFLGGHKAYYLPPEVDLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGC 237
Query: 162 ------HQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVK------- 208
+D + C I DLL +K GT
Sbjct: 238 SNYQGLTKDPLANYLALSKEVCQFVNEC--YIPDLLAVAGFYKDWGGIGGTSNYLAFGEF 295
Query: 209 --------LEDAWGWGFSGVM--------------IRGSGAAWDLRKS-----QPYECYS 241
A SGV+ + PY+ +
Sbjct: 296 ATDDSSPEKHLATSQFPSGVITGRDLGKVDNVDLGAIYEDVKYSWYAPGGDGKHPYDGVT 355
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDP-KIVPPK 300
+ + K + + + E + R + G+ V K+ P
Sbjct: 356 DPKYTKLDDKDHYSWMKAPRYKGKAMEVGPLARTFIAYAKGQPDFKKVVDMVLGKLSVPA 415
Query: 301 --------------------RADMKRSMESLIH----HFKLYTEGYHVPVGEVYAAVEAP 336
A+M++ ++ + L + + +AP
Sbjct: 416 TALHSTLGRTAARGIETAIVCANMEKWIKEMADSGAKDNTLCAKWEMPEESKGVGLADAP 475
Query: 337 KGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VS 381
+G ++ G K ++ P +L +E G +AD +
Sbjct: 476 RGALSHWIRIKGK-KIDNFQLVVPSTWNLGPRGAQGDKSPVEEALIGTPIADPKRPVEIL 534
Query: 382 AILGSLDIVFGE 393
+ + D
Sbjct: 535 RTVHAFDPXIAC 546
Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+++E++ V+ L RG E +++ + A + R + A
Sbjct: 24 IEGHLRIMVEVENGKVKDA-WSSSQLFRGLEIILKGRDPRDAQHFTQRACGICTYVHALA 82
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+ V+ + + IP +++R L + HL++
Sbjct: 83 SSRCVDDAVKVSIPANARMMRNLVMASQYLHDHLVHFYHFHA 124
>gi|20378821|gb|AAM20999.1| hydrogenase large subunit [Rhizobium tropici]
gi|20378823|gb|AAM21000.1| hydrogenase large subunit [Rhizobium tropici]
Length = 173
Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 42/102 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R+ + +D + + R G + RG E +++ + A + +R+ V
Sbjct: 26 IEGHMRVEVNVDEDNIIRNAVSTGTMWRGIEVILKNRDPRDAWAFTERICGVCTGTHALT 85
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI IP IR L ++ H+++
Sbjct: 86 SVRAVENALGITIPENANSIRNLMQLALQVHDHVVHFYHLHA 127
>gi|308048808|ref|YP_003912374.1| nickel-dependent hydrogenase large subunit [Ferrimonas balearica
DSM 9799]
gi|307630998|gb|ADN75300.1| nickel-dependent hydrogenase large subunit [Ferrimonas balearica
DSM 9799]
Length = 567
Score = 112 bits (281), Expect = 8e-23, Method: Composition-based stats.
Identities = 39/358 (10%), Positives = 77/358 (21%), Gaps = 90/358 (25%)
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++ L E + G H GGV + W
Sbjct: 189 AVSHYLKALEIQRVAAEMMAIFGGKSPHPQSIVVGGVTSVRDLLNPARLQEWKTKHAQVH 248
Query: 185 NDISDLLTGNRIFKQ------------------------------RNVNIGTVKLEDAWG 214
+ I + N G + D
Sbjct: 249 DFIERAYLPDIRMAADAYREEPTVLGGVGVTSFLTCRDFPLGNGEYLFNDGVILNGDLAN 308
Query: 215 WGFSGVMIRGSGAAWDLRKSQP-YECYSELDFDIPIGK------HGDCYDRYLVRMMEMR 267
+ + P Y G HG+ +
Sbjct: 309 VQPLDPSLIKEDVTHSWYQDGPALHPYEGRTEPDYTGFKTGQTLHGELPTLDVNGKYSWV 368
Query: 268 ESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR-------------------------- 301
+S + + + + + +P++V
Sbjct: 369 KSPRYNGEPIEVGPLACLLVNYAQGNPRVVEAVDGFLNDTGLPVEALFTTLGRTAGRLIQ 428
Query: 302 -----ADMKRSMESLIHHFKLYTEGYHVPVG------EVYAAVEAPKGEFGVYLISDGGN 350
+ E+L+ + + + P + +A +EAP+G ++ G
Sbjct: 429 NMLISKAGMETFEALVSNLAVDKSTFTPPEMDPDKEYQGHAIIEAPRGTLSHWVRIKG-G 487
Query: 351 KPYRCKIRAPGYAH---------LQAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
K + P + + E G +L D V ++ S D
Sbjct: 488 KVENYQAVVPTTWNAGPVDANGKIGPFEASLIGLKLDDPTKPLEVIRVIHSFDPCMAC 545
Score = 103 bits (256), Expect = 8e-20, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 42/102 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E+D V L RG E +++ ++ + A R+ V +
Sbjct: 13 IEGHLRVEVEVDENNVITQAWSSSTLWRGIEVIMKGRSPMDAGLLVQRICGVCTSSHYRC 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LG++IP Q +R L + HL++
Sbjct: 73 GTEAVENALGVKIPANAQYVRTLIQVALFLHDHLVHFYHLHA 114
>gi|83376047|gb|ABC17828.1| HupL [Bradyrhizobium sp. UPM1029]
Length = 596
Score = 112 bits (281), Expect = 8e-23, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 42/102 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R+ + +D + V R G + RG E +++ + A + +R+ V
Sbjct: 26 IEGHMRVEVNVDADNVIRNAVSAGTMWRGIEVILKNRDPRDAWAFTERICGVCTGTHALT 85
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI IP IR L ++ H+++
Sbjct: 86 SVRAVENALGITIPENANSIRNLMQLALQVHDHVVHFYHLHA 127
Score = 96.9 bits (240), Expect = 5e-18, Method: Composition-based stats.
Identities = 18/234 (7%), Positives = 46/234 (19%), Gaps = 47/234 (20%)
Query: 206 TVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMME 265
V + + G P ++ + + +
Sbjct: 346 FVVHSWYKYPDETKGLHPWDGVTEPNYVMGPNAKGTKTAIEQLDEGGKYSWIKAPRWRGH 405
Query: 266 MRESVKIIRQC-------------------------------VNRLLGKNKVGPVSASDP 294
E + R + R + +
Sbjct: 406 AMEVGPLARWVIGYAQNKAEFKDPVDKFLRDLHLPMSALFSTLGRTAARALESVWAGRQM 465
Query: 295 KIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYR 354
+ K ++ +S + + + EAP+G ++ K
Sbjct: 466 RYFQDKLVANIKAGDSSTANVDKWKPESWPKEAKGVGFTEAPRGALAHWVKIKDT-KIDN 524
Query: 355 CKIRAPGYA---------HLQAMEFLCKGHQL------ADVSAILGSLDIVFGE 393
+ P ++ A E + ++ + S D
Sbjct: 525 YQCVVPTTWNGSPRDPKGNIGAFEASLMNTPMVNPEQPLEILRTIHSFDPCLAC 578
>gi|146338751|ref|YP_001203799.1| uptake hydrogenase large subunit [Bradyrhizobium sp. ORS278]
gi|146191557|emb|CAL75562.1| Uptake hydrogenase large subunit precursor [Bradyrhizobium sp.
ORS278]
Length = 596
Score = 112 bits (281), Expect = 9e-23, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 40/102 (39%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D V R G + RG E ++ + A + +R+ V
Sbjct: 26 IEGHLRVEVNVDSNNVIRNAVSTGTMWRGIETILRNRDPRDAWAFTERICGVCTGTHALT 85
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI IP IR + ++ HL++
Sbjct: 86 SVRAVENALGIMIPDNANSIRNIMQLCLQVHDHLVHFYHLHA 127
Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats.
Identities = 33/392 (8%), Positives = 75/392 (19%), Gaps = 111/392 (28%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H ++ A+ L + +++++ + G H + G
Sbjct: 188 HAAYKLPPEANLMAVAHYLEALDFQKEIVKIHTIYGGKNPHPNWLVGGVPCAVNVDGTGA 247
Query: 172 DIGCWCDSF------------PSALNDISDLLTGNRIFKQRNVNIG-------------- 205
+ + D++ +K G
Sbjct: 248 VGAINMERLNLVSSIIDRSIEFVQKVYLPDVVAIGSFYKDWLYGGGLSGKSVMSYGDIPE 307
Query: 206 --------------------------------------TVKLEDAWGWGFSGVMIRGSGA 227
V S + G
Sbjct: 308 NANDYSAKNLKLPRGVILNGNLNEVLPIDHGDPEQIQEFVTHSWYKYPDESKGLHPWDGV 367
Query: 228 AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVG 287
+ P ++ D + + E + R + + +
Sbjct: 368 TEPNYQLGPNAKGTKTDIKELDEGGKYSWIKAPRWRGNAVEVGPLARYIIGYAQNRPEFK 427
Query: 288 PVSASDPKIVP---------------------PKRADMKRSMESLIHHFK---------- 316
+ K + M+ + L+ K
Sbjct: 428 EPTDKLLKTLNLPVTALFSTLGRTAARALECDWAAGQMRYFQDKLVARIKAGDSSTANVE 487
Query: 317 LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA---------HLQA 367
+ + Y EAP+G ++ K + P ++ A
Sbjct: 488 KWKPESWPKEAKGYGFTEAPRGALAHWIKIKDT-KIDNYQCVVPTTWNGSPRDPKGNIGA 546
Query: 368 MEFLCKGHQLAD------VSAILGSLDIVFGE 393
E +AD + + S D
Sbjct: 547 FEASLMDTPMADPEKPLEILRTIHSFDPCLAC 578
>gi|21673607|ref|NP_661672.1| uptake hydrogenase, large subunit [Chlorobium tepidum TLS]
gi|21646722|gb|AAM72014.1| uptake hydrogenase, large subunit [Chlorobium tepidum TLS]
Length = 477
Score = 112 bits (281), Expect = 1e-22, Method: Composition-based stats.
Identities = 42/382 (10%), Positives = 86/382 (22%), Gaps = 100/382 (26%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H +++ A+ L + +++++ G H Y G P
Sbjct: 80 HPAYKLPPEVNLIAVAHYLEALDFQKEIVKIQTVFDGKNPHPNYVVGGMACAIDPNSDTA 139
Query: 172 DIGCWCDSFPSALND---------ISDLLTGNRIFKQRNVNIGT---------------- 206
+ +++ I DL+ +K+ G
Sbjct: 140 INIERLNMIKKIIDETQTFIDQVYIPDLIAIAGFYKEWLYGGGLGNFMSYGDFPETTLDD 199
Query: 207 ----------------------------VKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
E+ ++ G ++ P
Sbjct: 200 YEKLLWPRGIIMGKDLTTVLDVDPRDMSQIKEEIAHSWYTYSNGSDQGLHPWEGETNPKY 259
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLG-------------KNK 285
+ F+ + + + E + V G K +
Sbjct: 260 TAPKPPFEYLDTDKKYSWLKTPRWKDQPVEVGPLASVLVAYAKGDSMIKDTVGMVLSKLE 319
Query: 286 VGPVSASDPKIVPPKRADMKRSMESLIHHF------------------KLYTEGYHVPVG 327
VGP + R + + HF + +
Sbjct: 320 VGPEALYSTLGRTAARGIECKQTAGFMRHFYDELVANVKTGDYQTFNSERWEPLTWPKEC 379
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLA 378
+ + EAP+G G ++ K +I P + A E KG +
Sbjct: 380 KGFGYTEAPRGSLGHWIRI-ENGKIGDYQIVVPSTWNASPRDGRGNSGAYEAALKGTPMH 438
Query: 379 D------VSAILGSLDIVFGEV 394
D + + S D
Sbjct: 439 DPSQPLEILRTVHSFDPCLACA 460
>gi|213027699|ref|ZP_03342146.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Typhi str. 404ty]
Length = 219
Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats.
Identities = 36/100 (36%), Positives = 53/100 (53%)
Query: 293 DPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKP 352
P PP + + +E+LI HF + G +P E + VEA KG YL SDG
Sbjct: 1 HPLTTPPPKERTLQHIETLITHFLQVSWGPVMPAQESFQMVEATKGINSYYLTSDGSTMS 60
Query: 353 YRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFG 392
YR ++R P +AHLQ + +G ++D+ LGS+D V+
Sbjct: 61 YRTRVRTPSFAHLQQIPSAIRGSLVSDLIVYLGSIDFVYV 100
>gi|24113816|ref|NP_708326.1| large subunit of hydrogenase 3 [Shigella flexneri 2a str. 301]
gi|24052903|gb|AAN44033.1| large subunit of hydrogenase 3 [Shigella flexneri 2a str. 301]
Length = 139
Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 303 DMKRSMESLIHHFKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
M + L TEG+ P EAP+GE + + K +R + RA
Sbjct: 13 AMLEFALDNMPDTPLLTEGFSYKPHAFALGFAEAPRGEDVHWSMLGDNQKLFRWRCRAAT 72
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 73 YANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 107
>gi|322417995|ref|YP_004197218.1| nickel-dependent hydrogenase large subunit [Geobacter sp. M18]
gi|320124382|gb|ADW11942.1| nickel-dependent hydrogenase large subunit [Geobacter sp. M18]
Length = 565
Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats.
Identities = 32/284 (11%), Positives = 67/284 (23%), Gaps = 30/284 (10%)
Query: 139 LMVFYERASGSRMHAAYF--RPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRI 196
+ + + P P P I++ + +
Sbjct: 267 FYKEWAAIGAGVGNYMCYPEFPDAAGNFWLPGGAILNRDISKVVPLDQKKITEHVEHSWY 326
Query: 197 FKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCY 256
G E + ++G D K + + + +G
Sbjct: 327 QDADGEGKGLHPWEGSTEPNYTGPKPPYQYLDTDK-KYSWVKAPRYEERPMEVGPLSRVL 385
Query: 257 DRYLVRMMEMRESVKI--------IRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM 308
Y+ E + +V + + L G + P ++ ++
Sbjct: 386 VAYVSGHKETKAAVDLVLGKLGVGPEALFSTLGRTGARGVDCLVIARQAPKWLDELIGNI 445
Query: 309 ---ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
+ IH + + Y EAP+G G ++ K + P +
Sbjct: 446 AKGDLRIHSNEKWDPSTWPAEALGYGWHEAPRGGLGHWIKIK-DQKILNYQAVVPSTWNA 504
Query: 366 Q---------AMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
E G +AD + + S D
Sbjct: 505 SPRDAKGQAGPYEAALLGTPVADPEKPLEILRTIHSFDPCLACA 548
Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats.
Identities = 34/195 (17%), Positives = 54/195 (27%), Gaps = 31/195 (15%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E+ + G + RG EK+++ + A + R V A
Sbjct: 12 IEGHLRVEAEVTDGKISNA-WVSGTMFRGIEKVLQGRDPRDAWYFTQRFCGVCTTVHSIA 70
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA------------------- 120
AVE L I +P QLIR + I H+++
Sbjct: 71 SIRAVEDALKIPVPPNAQLIRNIIIAIQNTQDHVIHFYHLHALDWVDITSGLKADPVKTA 130
Query: 121 -------MDVGALTPPLWGFEEREKLMVFYERAS----GSRMHAAYFRPGGVHQDIPPEL 169
+++ K V R H AY P +
Sbjct: 131 QLASSISDWPNNSPTYFKAVQDKVKAFVASGRLGPFANAYWGHPAYKLPPEANLMATAHY 190
Query: 170 VEDIGCWCDSFPSAL 184
+E + D
Sbjct: 191 LEALEWQKDIIKIHA 205
>gi|20378809|gb|AAM20993.1| hydrogenase large subunit [Bradyrhizobium sp. UPM1167]
Length = 181
Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 39/102 (38%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ LD V R G + RG E ++ + A + +R+ V A
Sbjct: 21 IEGHLRVEANLDSNNVIRNAVSSGTMWRGIEVILRGRDPRDAWAFTERICGVCTGTHALA 80
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI IP IR + + HL++
Sbjct: 81 SVRAVENALGIAIPENANSIRNIMQLCLLVHDHLVHFYHLHA 122
>gi|115523253|ref|YP_780164.1| nickel-dependent hydrogenase, large subunit [Rhodopseudomonas
palustris BisA53]
gi|115517200|gb|ABJ05184.1| nickel-dependent hydrogenase, large subunit [Rhodopseudomonas
palustris BisA53]
Length = 597
Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 41/102 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D V R G + RG E +++ + A + +R+ V
Sbjct: 27 IEGHLRVEVNVDSNNVIRNAVSTGTMWRGIEVILKNRDPRDAWAFTERICGVCTGTHALT 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE L I+IP IR + ++ H+++
Sbjct: 87 SVRAVENALDIKIPENANTIRNIMQLTLQVHDHIVHFYHLHA 128
Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 23/234 (9%), Positives = 53/234 (22%), Gaps = 47/234 (20%)
Query: 206 TVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMME 265
V + + G + P ++ + + + +
Sbjct: 347 FVTHSWYKYPDETKGLHPWDGVTEPNYQLGPKFKGTKTRIEAVDEEAKYSWIKSPRWKGH 406
Query: 266 MRESVKIIRQC-------------------------------VNRLLGKNKVGPVSASDP 294
E + R + R + +A
Sbjct: 407 AVEVGPLARYIVGYAQNKPEFKEPTEKLLKDLGLPLPALFSTLGRTAARALEAQWAAHQL 466
Query: 295 KIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYR 354
+ K ++ +S + + ++ + EAP+G G ++ K
Sbjct: 467 RYFQDKLMTALKNGDSNTANTEKWSPDTWPAEVKGVGFTEAPRGALGHWVKIK-NGKIDN 525
Query: 355 CKIRAPGYAH---------LQAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
+ P + + A E +AD + L S D
Sbjct: 526 YQAVVPTTWNGSPRDPQGGIGAFEASLLDTPMADPNQPLEILRTLHSFDPCLAC 579
>gi|298376321|ref|ZP_06986277.1| phosphoribosyl-AMP pyrophosphatase/phosphoribosyl-ATP
cyclohydrolase [Bacteroides sp. 3_1_19]
gi|301309320|ref|ZP_07215262.1| phosphoribosyl-AMP pyrophosphatase/phosphoribosyl-ATP
cyclohydrolase [Bacteroides sp. 20_3]
gi|298267358|gb|EFI09015.1| phosphoribosyl-AMP pyrophosphatase/phosphoribosyl-ATP
cyclohydrolase [Bacteroides sp. 3_1_19]
gi|300832409|gb|EFK63037.1| phosphoribosyl-AMP pyrophosphatase/phosphoribosyl-ATP
cyclohydrolase [Bacteroides sp. 20_3]
Length = 573
Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats.
Identities = 46/396 (11%), Positives = 87/396 (21%), Gaps = 102/396 (25%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H T ++ A L E +++++ + G H Y G
Sbjct: 162 GQLGIFANGYWGHPDYKLTPEQNLIATVHYLDALEWQKEVVKVHAVFGGKNPHPNYIVGG 221
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALND---------ISDLLTGNRIFKQRNVNIG----T 206
E L + I DLL ++K + IG
Sbjct: 222 MPCSIDLNEANAINADRLALVKQKLEEAKTFINQVYIPDLLMIANVYKDKWSKIGGGVRN 281
Query: 207 VKLEDAWGWGFSG---------------------------VMIRGSGAAWDLRKS----- 234
+ G K
Sbjct: 282 YLSYGDYPMFDLGEVESYKIPRGIVLDRDLSKVHPVDANSPEEIKEYIYHSWYKYTQGDK 341
Query: 235 ---QPYECYSELDFDIPIGKHG-------DCYDRYLVRMMEMRESVKIIRQCVNRLLGKN 284
PYE + L++ P + + + E E + R V GK
Sbjct: 342 AGLHPYEGETHLEYTGPRPPYKLLDVEDKYSWIKTPRWKQEPMEVGPLARLIVAYAAGKE 401
Query: 285 KVGPVSASDPKIVPPKRADM-------------------------------KRSMESLIH 313
+ + + + + +S +
Sbjct: 402 PQKSIVDETLRQLDLPVDALFSTLGRTAARGLECRMAADWALEFFNQLIKNLENGDSRMA 461
Query: 314 HFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH--------- 364
+ + + EAP+G +++ D + ++ P +
Sbjct: 462 NSAEWERENWPDHEQGVGLAEAPRGALAHFIVIDKN-RVKNYQMVVPTTWNASPRDENGV 520
Query: 365 LQAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
L A E G + D + + S D
Sbjct: 521 LSAYESALIGTPIYDPKQPLEILRTIHSFDPCLACA 556
Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 27/195 (13%), Positives = 54/195 (27%), Gaps = 31/195 (15%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++G ++ G + RG E +++ + + R+ V A
Sbjct: 13 IEGHLRVEAEIEGGTIKNA-YSSGTMVRGIENIVKDRDPRDVWAFVGRVCGVCTSIHSLA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV---------------- 123
AVE GI IP ++R + + + H ++
Sbjct: 72 SVRAVENARGIVIPPNASMVRNIMQAVLYMHDHTVHFYQLHALDWVDVVSALKADPKAAA 131
Query: 124 --------------GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL 169
G T ++ A+G H Y +
Sbjct: 132 LLAQQLSPWAKNTEGYFTATQQRLKKFVASGQLGIFANGYWGHPDYKLTPEQNLIATVHY 191
Query: 170 VEDIGCWCDSFPSAL 184
++ + +
Sbjct: 192 LDALEWQKEVVKVHA 206
>gi|90425255|ref|YP_533625.1| nickel-dependent hydrogenase, large subunit [Rhodopseudomonas
palustris BisB18]
gi|90107269|gb|ABD89306.1| nickel-dependent hydrogenase, large subunit [Rhodopseudomonas
palustris BisB18]
Length = 597
Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 40/102 (39%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D V R G + RG E ++ + A + +R+ V
Sbjct: 27 IEGHLRVEVNVDANNVIRNAVSTGTMWRGIEVILRGRDPRDAWAFTERICGVCTGTHALT 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE L I+IP IR + ++ H+++
Sbjct: 87 SVRAVENALDIKIPENANTIRNIMQLTLQVHDHIVHFYHLHA 128
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 23/234 (9%), Positives = 53/234 (22%), Gaps = 47/234 (20%)
Query: 206 TVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMME 265
V + + G + P ++ + + + +
Sbjct: 347 FVTHSWYKYPDETKGLHPWDGVTVPHYELGPKSKGTKTRIEAVDEEAKYSWIKSPRWKGN 406
Query: 266 MRESVKIIRQC-------------------------------VNRLLGKNKVGPVSASDP 294
E + R + R + +A
Sbjct: 407 AVEVGPLARYIVGYAQNKPEFKEPTEKLLKDLGLPVTALFSTLGRTAARALEAQWAAHQL 466
Query: 295 KIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYR 354
+ K ++ +S + + ++ + EAP+G G ++ K
Sbjct: 467 RYFQNKLMASLKAGDSATANVEKWSPETWPKEVKGVGFTEAPRGALGHWIKIK-DGKIDN 525
Query: 355 CKIRAPGYAH---------LQAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
+ P + + A E +AD + L S D
Sbjct: 526 YQAVVPTTWNGSPRDPKGGIGAFEASLLETPMADPNQPLEILRTLHSFDPCLAC 579
>gi|91975643|ref|YP_568302.1| nickel-dependent hydrogenase, large subunit [Rhodopseudomonas
palustris BisB5]
gi|91682099|gb|ABE38401.1| nickel-dependent hydrogenase, large subunit [Rhodopseudomonas
palustris BisB5]
Length = 597
Score = 111 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 39/102 (38%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D V R G + RG E +++ + A + R+ V
Sbjct: 27 IEGHLRVEVNVDSANVIRNAVSTGTMWRGIEIILKGRDPRDAWAFTQRICGVCTGTHALT 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE L I+IP IR + + H+++
Sbjct: 87 SVRAVENALDIKIPENANTIRNIMQLTLYVHDHIVHFYHLHA 128
Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 23/229 (10%), Positives = 49/229 (21%), Gaps = 47/229 (20%)
Query: 211 DAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESV 270
+ + G K P ++ + + + E
Sbjct: 352 WYKYPDETKGLHPWDGVTEPNFKLGPNAKGTKTRIEALDEDAKYSWIKSPRWKGNAVEVG 411
Query: 271 KIIRQC-------------------------------VNRLLGKNKVGPVSASDPKIVPP 299
+ R + R + +A +
Sbjct: 412 PLARYIVGYAQNKPEFKEPTDKLLKDLGLPLPALFSTLGRTAARALEAQWAARQLRYFQD 471
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359
K ++ +S + + + EAP+G G ++ K +
Sbjct: 472 KLIASLKAGDSATANVDKWKPESWAKDVKGVGFTEAPRGALGHWVKIK-DGKIDNYQAVV 530
Query: 360 PGYAH---------LQAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
P + + A E +AD + L S D
Sbjct: 531 PTTWNGSPRDPKGGIGAFEASLLDTPMADPNQPLEILRTLHSFDPCLAC 579
>gi|39995233|ref|NP_951184.1| nickel-dependent hydrogenase large subunit [Geobacter
sulfurreducens PCA]
gi|39981995|gb|AAR33457.1| nickel-dependent hydrogenase, large subunit [Geobacter
sulfurreducens PCA]
Length = 564
Score = 111 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 51/390 (13%), Positives = 95/390 (24%), Gaps = 96/390 (24%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H ++ A L + + +++ + H F G
Sbjct: 159 GRLGPFGNAYWGHPAYKLPPEANLMATAHYLEALDWQREIIKIHAILGSKNPHPQTFLVG 218
Query: 160 GVHQDIPP--------ELVEDIGCWCDSFPSALND-ISDLLTGNRIFKQRNVNIGTVKLE 210
G+ I P + + +IG + + L F IG
Sbjct: 219 GMAVPIDPNSQNALNADKIAEIGQLLKKTRAFVEKVYIPDLLAVASFYTEWAGIGGGVGN 278
Query: 211 DAWG--------------WGFSGVMIRGS---GAAWDLRKS----------------QPY 237
W G+++ D RK PY
Sbjct: 279 YLSYGEYPLDNSGKPEKLWLPQGIILNRDLSRVYPIDQRKITESVAHSWYEGEAAGVHPY 338
Query: 238 ECYSELDFDIPIGKH-------GDCYDRYLVRMMEMRESVKII-------------RQCV 277
+ +E + P + + + + E+ + R V
Sbjct: 339 DETTEARYTGPTPPYEMLDTDGKYSWVKSPRYDGKPMETGPLATILVAYAAGHPGARGAV 398
Query: 278 NRLLGKNKVGPVSASDPKIVPPKRA--------DMKRSMESL----------IHHFKLYT 319
+ +LGK GP + R ++ ++ L IH+ + +
Sbjct: 399 DMVLGKLGAGPEALFSTLGRTAARGIETLLVARELSSWLDMLVANIAGGDLTIHNGEKWD 458
Query: 320 EGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEF 370
Y AP+G G ++ K + P + L E
Sbjct: 459 PATWPREAAGYGWHNAPRGALGHWIRIK-DQKIENYQAVVPSTWNASPRDEKGQLGPYEA 517
Query: 371 LCKGHQLAD------VSAILGSLDIVFGEV 394
G +AD + + S D
Sbjct: 518 ALVGTPMADPGRPLEILRTIHSFDPCLACA 547
Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats.
Identities = 56/366 (15%), Positives = 104/366 (28%), Gaps = 54/366 (14%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++G + + RG EK+++ + A + R V A
Sbjct: 10 IEGHLRIQAEVNGGRITDA-WSSCTMFRGIEKILKGRDPRDAWYFTQRFCGVCTTVHSIA 68
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA------------------- 120
AVE L ++IP+ +LIR L + H+++
Sbjct: 69 SIRAVENALNVKIPLNAELIRNLIIGSQVVQDHVIHFYHLHALDWVDVVSALKADPSKTA 128
Query: 121 -------MDVGALTPPLWGFEEREKLMVFYERAS----GSRMHAAYFRPGGVHQDIPPEL 169
++R V R H AY P +
Sbjct: 129 TLAASISDWPLNSPTYFKSIQDRLAAFVNKGRLGPFGNAYWGHPAYKLPPEANLMATAHY 188
Query: 170 VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA-- 227
+E + + L + N + V V ++ + I G
Sbjct: 189 LEALDWQREIIKIHAI----LGSKNPHPQTFLVGGMAVPIDPNSQNALNADKIAEIGQLL 244
Query: 228 ----AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR--LL 281
A+ + P + G G + + S K + + + +L
Sbjct: 245 KKTRAFVEKVYIPDLLAVASFYTEWAGIGGGVGNYLSYGEYPLDNSGKPEKLWLPQGIIL 304
Query: 282 GKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTE----GYHVP------VGEVYA 331
++ KI + +H + TE G P G+ Y+
Sbjct: 305 NRDLSRVYPIDQRKITESVAHSWYEGEAAGVHPYDETTEARYTGPTPPYEMLDTDGK-YS 363
Query: 332 AVEAPK 337
V++P+
Sbjct: 364 WVKSPR 369
>gi|167945568|ref|ZP_02532642.1| NADH dehydrogenase (quinone) [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 107
Score = 111 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 50/93 (53%)
Query: 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
S + +NFGP HP G L ++L G+ V G LHRG EKL+E + ++Q +
Sbjct: 14 SNEYELNFGPNHPGIEGNYALKVKLHGDKVIEAKADGGYLHRGFEKLMEQRLWIQNIALV 73
Query: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQL 98
R+ P E Y++AVE L G+E+P R Q
Sbjct: 74 PRICVPDPSPMEVCYSMAVEDLCGLEVPERAQW 106
>gi|256827279|ref|YP_003151238.1| Ni,Fe-hydrogenase I large subunit [Cryptobacterium curtum DSM
15641]
gi|256583422|gb|ACU94556.1| Ni,Fe-hydrogenase I large subunit [Cryptobacterium curtum DSM
15641]
Length = 548
Score = 111 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 42/338 (12%), Positives = 76/338 (22%), Gaps = 73/338 (21%)
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN-- 185
L + K G H GG E ++D+ + +
Sbjct: 189 HYLEALRMQAKASEIAGLLGGKMPHIMTSTVGGTMFVPTEEKLDDLWALVNELYDWVEAT 248
Query: 186 ----------DISDLLTGNRIFK----------------QRNVNIGTVKLEDAWGWGFSG 219
+D R +R + G + A
Sbjct: 249 MLPDTLAIAPYYADAFEFGRGCGRYIAWGVFDDTSFDMTKRYLPAGVLNDGFALEEVNED 308
Query: 220 VMIRGSGAAWDL--RKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCV 277
+ G +W P E ++ +F + + + E+ + R V
Sbjct: 309 AISEYVGHSWYEGSSDLNPREGETKAEFTSYDVADRYSWVKAPTYNGKAMEATSMSRMLV 368
Query: 278 NRLLGKN---------------------------KVGPVSASDPKIVPPKRADMKRSMES 310
G + G I + ++ +E+
Sbjct: 369 AYKRGVPFIVEHVDALLEALGAPGRIDIVPSTMGRTGVRQIETLYIAGLMKDWVRELIEA 428
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL----- 365
+ Y GE A EAP+G K +I P +L
Sbjct: 429 IKGGDTEYFRPPTRTTGEGSAFWEAPRGALYHTEKVK-DGKITDYQIIIPSTWNLAPING 487
Query: 366 ----QAMEFLCKGHQLADVS------AILGSLDIVFGE 393
+E G + D+ + S D
Sbjct: 488 HGEHGPLEQALIGVPVTDLEKPINALRTVHSFDPCTAC 525
Score = 98.5 bits (244), Expect = 2e-18, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E++ +V G RG E ++ +T A R+ V P++ H+
Sbjct: 12 IEGHLRVEMEVNDGMVTDA-WVSGGCFRGMELVVRDRTPEDAAMIVQRICGVCPVSHAHS 70
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
++A EK GI I ++IR L + S++L A
Sbjct: 71 ASIAGEKAYGITISNNARIIRNLVEAAQFMHSNILWFYNLAALDY 115
>gi|148262946|ref|YP_001229652.1| nickel-dependent hydrogenase, large subunit [Geobacter
uraniireducens Rf4]
gi|146396446|gb|ABQ25079.1| nickel-dependent hydrogenase, large subunit [Geobacter
uraniireducens Rf4]
Length = 569
Score = 111 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 47/394 (11%), Positives = 91/394 (23%), Gaps = 99/394 (25%)
Query: 99 IRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRP 158
L H ++ A L E ++ ++ + H F
Sbjct: 160 RGRLGPFANAYWGHPAYRLPPEANLMATAHYLEALEWQKDVIKIHAILGSKNPHPQTFLV 219
Query: 159 GGVHQDIP--------PELVEDIGCWCDSFPSALN--DISDLLTGNRIFKQR---NVNIG 205
GG+ + + +I + I DLL +K+ +G
Sbjct: 220 GGMAIALDPNSQSALNDAKIAEIRSLLAKTREFVEKVYIPDLLAVASFYKEWAGIGAGVG 279
Query: 206 TVKLEDAWGWGFSG------------------------VMIRGSGAAWDLRKS------- 234
+ SG
Sbjct: 280 NYLSYGEFPRDNSGKREKLWLPQGIIIGKDLTKVHPVDHKKISEYVDHSWYDYSVGQGKG 339
Query: 235 -QPYECYSELDFDIPIGKH-------GDCYDRYLVRMMEMRESVKIIRQ----------- 275
P++ +E ++ P + + + E + R
Sbjct: 340 LHPWDGETEQNYSGPKPPYEFLDTSRKYSWVKSPRYEDTPMEVGPLARMLVAYASGHIPV 399
Query: 276 --CVNRLLGKNKVGPVSASDPKIVPPKR--------ADMKRSMESL----------IHHF 315
V+ +L K VGP + R ++ + ++ L IH+
Sbjct: 400 KKAVDGVLAKLNVGPDALFSTLGRTAARGIETLVIAEELPQWLDLLVSNIAGGDLSIHNG 459
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ--------- 366
+ + Y EAP+G G ++ K + P +
Sbjct: 460 EKWDPDRWPAEASGYGFHEAPRGALGHWIRIR-NQKILNYQAVVPSTWNASPRDARGVRG 518
Query: 367 AMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
E G +AD + + S D
Sbjct: 519 PYEEALVGTPMADPQKPLEILRTVHSFDPCLACA 552
Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ EL V + RG EK+++ + A + R V A
Sbjct: 12 IEGHLRIEAELSNGKVADAWCSS-TMFRGIEKILKGRDPRDAWVFTQRFCGVCTTVHAIA 70
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
VE LGI P +LIR + I + H+++
Sbjct: 71 SIRTVENALGIRAPANAELIRNIVIGIQNVQDHVIHFYHLHA 112
>gi|298504237|gb|ADI82960.1| periplasmically oriented, membrane-bound [NiFe]-hydrogenase large
subunit [Geobacter sulfurreducens KN400]
Length = 566
Score = 111 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 51/390 (13%), Positives = 95/390 (24%), Gaps = 96/390 (24%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H ++ A L + + +++ + H F G
Sbjct: 161 GRLGPFGNAYWGHPAYKLPPEANLMATAHYLEALDWQREIIKIHAILGSKNPHPQTFLVG 220
Query: 160 GVHQDIPP--------ELVEDIGCWCDSFPSALND-ISDLLTGNRIFKQRNVNIGTVKLE 210
G+ I P + + +IG + + L F IG
Sbjct: 221 GMAVPIDPNSQNALNADKIAEIGQLLKKTRAFVEKVYIPDLLAVASFYTEWAGIGGGVGN 280
Query: 211 DAWG--------------WGFSGVMIRGS---GAAWDLRKS----------------QPY 237
W G+++ D RK PY
Sbjct: 281 YLSYGEYPLDNSGKPEKLWLPQGIILNRDLSRVYPIDQRKITESVAHSWYEGEAAGVHPY 340
Query: 238 ECYSELDFDIPIGKH-------GDCYDRYLVRMMEMRESVKII-------------RQCV 277
+ +E + P + + + + E+ + R V
Sbjct: 341 DETTEARYTGPTPPYEMLDTDGKYSWVKSPRYDGKPMETGPLATILVAYAAGHPGARGAV 400
Query: 278 NRLLGKNKVGPVSASDPKIVPPKRA--------DMKRSMESL----------IHHFKLYT 319
+ +LGK GP + R ++ ++ L IH+ + +
Sbjct: 401 DMVLGKLGAGPEALFSTLGRTAARGIETLLVARELSSWLDMLVANIAGGDLTIHNGEKWD 460
Query: 320 EGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEF 370
Y AP+G G ++ K + P + L E
Sbjct: 461 PATWPREAAGYGWHNAPRGALGHWIRIK-DQKIENYQAVVPSTWNASPRDEKGQLGPYEA 519
Query: 371 LCKGHQLAD------VSAILGSLDIVFGEV 394
G +AD + + S D
Sbjct: 520 ALVGTPMADPGRPLEILRTIHSFDPCLACA 549
Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats.
Identities = 56/366 (15%), Positives = 104/366 (28%), Gaps = 54/366 (14%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++G + + RG EK+++ + A + R V A
Sbjct: 12 IEGHLRIQAEVNGGRITDA-WSSCTMFRGIEKILKGRDPRDAWYFTQRFCGVCTTVHSIA 70
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA------------------- 120
AVE L ++IP+ +LIR L + H+++
Sbjct: 71 SIRAVENALNVKIPLNAELIRNLIIGSQVVQDHVIHFYHLHALDWVDVVSALKADPSKTA 130
Query: 121 -------MDVGALTPPLWGFEEREKLMVFYERAS----GSRMHAAYFRPGGVHQDIPPEL 169
++R V R H AY P +
Sbjct: 131 TLAASISDWPLNSPTYFKSIQDRLAAFVNKGRLGPFGNAYWGHPAYKLPPEANLMATAHY 190
Query: 170 VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA-- 227
+E + + L + N + V V ++ + I G
Sbjct: 191 LEALDWQREIIKIHAI----LGSKNPHPQTFLVGGMAVPIDPNSQNALNADKIAEIGQLL 246
Query: 228 ----AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR--LL 281
A+ + P + G G + + S K + + + +L
Sbjct: 247 KKTRAFVEKVYIPDLLAVASFYTEWAGIGGGVGNYLSYGEYPLDNSGKPEKLWLPQGIIL 306
Query: 282 GKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTE----GYHVP------VGEVYA 331
++ KI + +H + TE G P G+ Y+
Sbjct: 307 NRDLSRVYPIDQRKITESVAHSWYEGEAAGVHPYDETTEARYTGPTPPYEMLDTDGK-YS 365
Query: 332 AVEAPK 337
V++P+
Sbjct: 366 WVKSPR 371
>gi|71909598|ref|YP_287185.1| nickel-dependent hydrogenase, large subunit [Dechloromonas
aromatica RCB]
gi|71849219|gb|AAZ48715.1| Nickel-dependent hydrogenase, large subunit [Dechloromonas
aromatica RCB]
Length = 598
Score = 111 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 41/102 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + LD + V R G + RG E +++ + A + +R+ V
Sbjct: 26 IEGHLRVEVNLDDKNVIRNAVSTGTMWRGLEVILKGRDPRDAWAFTERICGVCTGTHALT 85
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE L I+IP IR L + HL++
Sbjct: 86 SVRAVEDALKIQIPENANTIRNLMQLNLYVHDHLVHFYHLHA 127
Score = 98.9 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 13/95 (13%), Positives = 25/95 (26%), Gaps = 16/95 (16%)
Query: 314 HFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH--------- 364
+ + + EAP+G G ++ K + P +
Sbjct: 487 NIEKWEPSTWPKEAMGAGFTEAPRGALGHWIRIKDT-KIDNYQCVVPTTWNGGPRDHKGQ 545
Query: 365 LQAMEFLCKGHQLA------DVSAILGSLDIVFGE 393
+ A E +A ++ L S D
Sbjct: 546 IGAFEASLMDTPVAKADEPLEILRTLHSFDPCLAC 580
>gi|50120167|ref|YP_049334.1| hydrogenase 2 large subunit [Pectobacterium atrosepticum SCRI1043]
gi|49610693|emb|CAG74138.1| hydrogenase-2 large subunit [Pectobacterium atrosepticum SCRI1043]
Length = 564
Score = 111 bits (279), Expect = 2e-22, Method: Composition-based stats.
Identities = 43/402 (10%), Positives = 83/402 (20%), Gaps = 93/402 (23%)
Query: 85 EKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYE 144
E + L H +++ A+ L E +
Sbjct: 147 EFAQVQQKIKNLVGSGQLGIFANGYWGHPAMSLPPEINLIAVAHYLQALECQRDANRIVA 206
Query: 145 RASGSRMHAAYFRPGGVH---------------QDIPPELVEDIGCWCDSFP-----SAL 184
G H GGV ++ +G + +
Sbjct: 207 ILGGKTPHIQNLAVGGVANPINLDSPGVLNLERLMYLKSFIDRLGDFIEQVYLVDTAVIA 266
Query: 185 NDISDLLTGNRIFKQR--------------------NVNIGTVKLEDAWGWGFSGVMIRG 224
+ T R ++ G + + + I
Sbjct: 267 AHYPEWFTMGRGADCYLCVPELPVDRKSETFLMPGGFLDNGKFRPINNPHDEYLLKGIEE 326
Query: 225 SGAAWDLRKSQPYECYSELDFDIPIGKHGD---CYDRYLVRMMEMRESVKIIRQCVNRLL 281
SG + QP + L G D + + E + N
Sbjct: 327 SGKHAWYQDDQPLAPWEGLTRPNYTGWQDDGKYSWVKSPTFYGNAVEMGPLAWLLCNLRA 386
Query: 282 GKNKVGPVSASDPKIVPPKRADMK---------------------------RSMESLIHH 314
G I ++ + ++L+ +
Sbjct: 387 GYQPAQHYFTRANDIYKALTGNVMTEEQLPSTLGRVLGRTVHACVLHDTLAQQWQALVTN 446
Query: 315 F-----KLYTEGYHVPVGE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL-- 365
+ + GE +EAP+G +++ K + P +
Sbjct: 447 IGNGDHETFIPPNIPEQGEFRGVGFIEAPRGALSHWVVIK-DGKIANYQAVVPSTWNAGP 505
Query: 366 -------QAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
E G +AD V + S D
Sbjct: 506 RNFNNEPGPYERSLVGTPVADPYKPLEVVRTIHSFDPCMSCA 547
Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ V + G + RG E++++ A R+ V A
Sbjct: 13 IEGHLRIDCEIEDGKVVKA-WSSGTMWRGMEEIVKGNDPRDAWMIVQRICGVCTTIHALA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LG+E+PI Q IR + + I H+++ +
Sbjct: 72 SVRAVENALGMEVPINAQYIRNIIAAAHSIHDHIVHFYQLSA 113
>gi|20378807|gb|AAM20992.1| hydrogenase large subunit [Bradyrhizobium sp. UPM1166]
Length = 178
Score = 111 bits (279), Expect = 2e-22, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 39/102 (38%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ LD + V G + RG E ++ + A + +R+ V A
Sbjct: 24 IEGHLRVEANLDSDNVICNAVSSGTMWRGIEVILRGRDPRDAWAFTERICGVCTGTHALA 83
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI IP IR + + HL++
Sbjct: 84 SVRAVENALGITIPENANSIRNIMQLCLLVHDHLVHFYHLHA 125
>gi|189346385|ref|YP_001942914.1| nickel-dependent hydrogenase large subunit [Chlorobium limicola DSM
245]
gi|189340532|gb|ACD89935.1| nickel-dependent hydrogenase large subunit [Chlorobium limicola DSM
245]
Length = 572
Score = 111 bits (279), Expect = 2e-22, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 43/104 (41%)
Query: 18 PAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQE 77
P G LR+ +++ V G + RG E ++ + A + +R+ V
Sbjct: 11 PRIEGHLRIEAKVNDSNVIEEAYSSGTMWRGIEVILRGRDPRDAWAFAERICGVCTTVHA 70
Query: 78 HAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A VE LGI++P ++IR L + + HL++
Sbjct: 71 LASVRCVEDALGIDVPTNARIIRNLMNATQQTQDHLVHFYHLHA 114
Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats.
Identities = 43/382 (11%), Positives = 84/382 (21%), Gaps = 100/382 (26%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H +++ + L + +++++ + G H Y G P
Sbjct: 175 HPAYKLPPEVNLIGVAHYLEALDFQKEIVKIHTIFGGKNPHPNYLVGGMACAIDPNSDTA 234
Query: 172 DIGCWCDSFPSALN---------DISDLLTGNRIFKQRNVNIGTVKL------------- 209
++ I DL+ +K+ G
Sbjct: 235 INIERLAMVKKIIDQTQQFIDQVYIPDLIAIAGFYKEWLYGGGLGNYLSYGDFPETSLDD 294
Query: 210 -------------------EDAWGWGFSGVMIRGSGAAWDLRKS-----QPYECY----- 240
D + V S + + K P+E
Sbjct: 295 FKTLLWPRGAILGKDLATVHDVDPRDAAHVTEEVSHSWYTYSKGDDKGLHPWEGETKPAY 354
Query: 241 --SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNK------------- 285
+ F+ + + E + R + G
Sbjct: 355 SGPKPPFEHLDTDRKYSWLKTPRWKNHPMEVGPLARVLIAYAKGDPMIKDTVGLVLSKLQ 414
Query: 286 VGPVSASDPKIVPPKRADMKRSMESLIHHF------------------KLYTEGYHVPVG 327
VGP + R + + HF +
Sbjct: 415 VGPEALFSTLGRTAARGIECKQTAGFMRHFYDQLVDNIKKGDYRTFNSDRWDPSTWPADC 474
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLA 378
+ + EAP+G G ++ K +I P + A E KG +A
Sbjct: 475 KGFGYSEAPRGSLGHWIHI-QDQKIKEYQIVVPSTWNASPRDSKGNSGAYEAALKGTPMA 533
Query: 379 D------VSAILGSLDIVFGEV 394
+ + + S D
Sbjct: 534 NPEQPLEIIRTVHSFDPCLACA 555
>gi|224369334|ref|YP_002603498.1| HynA [Desulfobacterium autotrophicum HRM2]
gi|223692051|gb|ACN15334.1| HynA [Desulfobacterium autotrophicum HRM2]
Length = 545
Score = 111 bits (279), Expect = 2e-22, Method: Composition-based stats.
Identities = 42/357 (11%), Positives = 84/357 (23%), Gaps = 75/357 (21%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVH--QDIPPEL 169
H ++ A + + + K + G H + GGV +D+ +
Sbjct: 173 HSAYALPAEANLMAAAHYIEALKLQAKAARMHAVFGGKNPHPQFLVVGGVTSVRDLNIDR 232
Query: 170 VEDIGCWCDSFPSALNDIS--DLLTGNRIFKQRNVNIGTVKLEDAWGWGFS--------- 218
+++ + ++++ DL+ +K G + +G
Sbjct: 233 IKEFEDIWKETKAFVDEVYIPDLMAIASFYKNWGAIGGNNEAFLVYGDFAENSSESRLLM 292
Query: 219 --GVMIRGSGAA-------------WDLRKSQPYECYSELDFDIPIG-----KHGDCYDR 258
G + +G G S P Y+ I + +
Sbjct: 293 PPGFIRKGLGVEKLDVELITEDVTRAWYENSTPSHPYAGKTEPIKGEVAYNTDDKYSWIK 352
Query: 259 YLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPK---------------------IV 297
E + R V G + K
Sbjct: 353 APRYDGLAPEVGPLARILVAYGKGDATAKNLVDQTLKKLGVGSDALFSTLGRTAARGLET 412
Query: 298 PPKRADMKRSMESLIHHF-----KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKP 352
M + L + K Y + + + P+G G ++ K
Sbjct: 413 VIIGDAMGNWLNELRSNIAKGDKKTYQSWTMPDKAKGFGLNDVPRGALGHWIEI-EDGKI 471
Query: 353 YRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
+ P + +E G +AD V + S D
Sbjct: 472 KNYQYVVPSTWNFGPADAHGNKGPVERSLIGTPIADPKKPLEVLRTVHSYDPCLACA 528
Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E++ V+ G + RG E +++ + A + R V +
Sbjct: 13 IEGHLRIEVEIENNRVKDAWCS-GQMFRGIEMMLKGRDPRDAHHFVQRSCGVCTYVHALS 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE I IP ++IR L H+++
Sbjct: 72 SVRAVEDACNIAIPDNARIIRNLIHAAQFQHDHIVHFYHLHA 113
>gi|189219331|ref|YP_001939972.1| Ni,Fe-hydrogenase I large subunit [Methylacidiphilum infernorum V4]
gi|189186189|gb|ACD83374.1| Ni,Fe-hydrogenase I large subunit [Methylacidiphilum infernorum V4]
Length = 600
Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 38/102 (37%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR + +D V R G + RG E +++ + + R+ V A
Sbjct: 29 IEGHLRCEVNVDSANVIRNAVSSGTMWRGIELIVKGRDPRDVWAFTQRICGVCTGVHALA 88
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI IP IR + + HL++
Sbjct: 89 SVRAVENALGITIPENAHFIRTIMHLTQMVHDHLVHFYHLHA 130
Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats.
Identities = 26/234 (11%), Positives = 48/234 (20%), Gaps = 47/234 (20%)
Query: 206 TVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMME 265
V + G P S+ + + + + +
Sbjct: 350 YVYHSWYEYPDPTQSRHPWDGITEPHFVLGPNAKGSKTNIEQLDEEGKYSWIKAPRFKGR 409
Query: 266 MRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM-------------KRSMESLI 312
E + R + GK + M ++
Sbjct: 410 AMEVGPLARFIIGYASGKEDFKEPIQRALSRLELPFEAMFSTLGRTLARALEAEWCAKML 469
Query: 313 HHF------------------KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYR 354
F + + VEAP+G G ++ K
Sbjct: 470 KRFFQRLIRNIYSGQLSTADTTKWDPQSWPLEAKGVGFVEAPRGSLGHWIRIK-NGKIEN 528
Query: 355 CKIRAPGYA---------HLQAMEFLCKGHQLA------DVSAILGSLDIVFGE 393
+ P ++ A E G LA ++ L S D
Sbjct: 529 YQAVVPTTWNGSPRDPQGNIGAFEASLLGTPLAKPEEPLEILRTLHSFDPCLAC 582
>gi|119900076|ref|YP_935289.1| ferredoxin hydrogenase large subunit [Azoarcus sp. BH72]
gi|119672489|emb|CAL96403.1| probable ferredoxin hydrogenase, large chain [Azoarcus sp. BH72]
Length = 598
Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 42/102 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R+ + LD V R G + RG E +++ + A + +R+ V
Sbjct: 28 IEGHMRVEVNLDSNNVIRNAVSTGTMWRGLEVILKGRDPRDAWAFTERICGVCTGTHALT 87
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI+IP IR L ++ HL++
Sbjct: 88 SVRAVEDALGIDIPENANSIRNLMQLTLQVHDHLVHFYHLHA 129
Score = 109 bits (272), Expect = 9e-22, Method: Composition-based stats.
Identities = 39/383 (10%), Positives = 82/383 (21%), Gaps = 111/383 (28%)
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
++ A+T L + ++ ++ + G H + G + +
Sbjct: 199 ANLMAVTHYLEALDFQKDIVKIHTIFGGKNPHPNWLVGGMPCAINLDGVGAVGAVNMERL 258
Query: 181 ------------PSALNDISDLLTGNRIFKQRNVNIG--------TVKLEDAWGWGFSGV 220
I DL+ +K G + D +G
Sbjct: 259 NLVKSIIDRSIEFIDQVYIPDLVAIASFYKDWTYGGGISSLSLLSYGDIPDRANDYGAGN 318
Query: 221 MIRGSG------------------------AAWDLRKS-------QPYECYSELDF---- 245
++ G + K P++ +E +F
Sbjct: 319 LLLPRGAIINGDLSKIHEVDLRDPEEIQEFVSHSWYKYADETKGLHPWDGVTEPNFVLGK 378
Query: 246 ---------DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPK- 295
+ + + E + R + + G + K
Sbjct: 379 NTKGTKTNVQSFDEEGKYSWIKSPRWRGHAMEVGPLARYVIGYVQGNPEFKEPVDKLLKD 438
Query: 296 --------------------IVPPKRADMKRSMESLIHHFK----------LYTEGYHVP 325
M + LI + K +
Sbjct: 439 LGLPLQAIFSTLGRTAARGLEASWAAHKMAYFYDKLIANIKAGDTATANVEKWDPSTWPK 498
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQ 376
+ EAP+G G ++ K + P + + A E
Sbjct: 499 EVKGVGFTEAPRGALGHWIKIK-DGKIDNYQAVVPTTWNGSPRDHKGQIGAFEASLMNTP 557
Query: 377 LA------DVSAILGSLDIVFGE 393
+A ++ L S D
Sbjct: 558 VAKADEPLEILRTLHSFDPCLAC 580
>gi|30750150|pdb|1UBH|L Chain L, Three-Dimensional Structure Of The Carbon Monoxide Complex
Of [nife]hydrogenase From Desulufovibrio Vulgaris
Miyazaki F
gi|30750152|pdb|1UBJ|L Chain L, Three-Dimensional Structure Of The Carbon Monoxide Complex
Of [nife]hydrogenase From Desulufovibrio Vulgaris
Miyazaki F
gi|30750154|pdb|1UBK|L Chain L, Three-Dimensional Structure Of The Carbon Monoxide Complex
Of [nife]hydrogenase From Desulufovibrio Vulgaris
Miyazaki F
gi|30750156|pdb|1UBL|L Chain L, Three-Dimensional Structure Of The Carbon Monoxide Complex
Of [nife]hydrogenase From Desulufovibrio Vulgaris
Miyazaki F
gi|30750158|pdb|1UBM|L Chain L, Three-Dimensional Structure Of The Carbon Monoxide Complex
Of [nife]hydrogenase From Desulufovibrio Vulgaris
Miyazaki F
gi|30750160|pdb|1UBO|L Chain L, Three-Dimensional Structure Of The Carbon Monoxide Complex
Of [nife]hydrogenase From Desulufovibrio Vulgaris
Miyazaki F
gi|30750162|pdb|1UBR|L Chain L, Three-Dimensional Structure Of The Carbon Monoxide Complex
Of [nife]hydrogenase From Desulufovibrio Vulgaris
Miyazaki F
gi|30750164|pdb|1UBT|L Chain L, Three-Dimensional Structure Of The Carbon Monoxide Complex
Of [nife]hydrogenase From Desulufovibrio Vulgaris
Miyazaki F
gi|30750166|pdb|1UBU|L Chain L, Three-Dimensional Structure Of The Carbon Monoxide Complex
Of [nife]hydrogenase From Desulufovibrio Vulgaris
Miyazaki F
Length = 534
Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats.
Identities = 42/356 (11%), Positives = 82/356 (23%), Gaps = 75/356 (21%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDI--PPEL 169
H ++ A L + K H + GGV P+
Sbjct: 177 HPAYYLDPETNLIATAHYLEALRLQVKAARAMAVFGAKNPHTQFTVVGGVTCYDALTPQR 236
Query: 170 VEDIGCWCDSFPSALNDIS--DLLTGNRIFKQRNVNIG---------------------- 205
+ + + ++++ DLL +K G
Sbjct: 237 IAEFEALWKETKAFVDEVYIPDLLVVAAAYKDWTQYGGTDNFITFGEFPKDEYDLNSRFF 296
Query: 206 ---TVKLEDAWGWGFSGVMIRGSGAAWDLRK----SQPYECYSELDFDIPIGKHGDCYDR 258
V D M + P++ ++ + G + +
Sbjct: 297 KPGVVFKRDFKNIKPFDKMQIEEHVRHSWYEGAEARHPWKGQTQPKYTDLHGDDRYSWMK 356
Query: 259 YLVRMMEMRESVKIIRQCVNRLLGKNKVGPV------------------------SASDP 294
M E E+ + + + G KV V +
Sbjct: 357 APRYMGEPMETGPLAQVLIAYSQGHPKVKAVTDAVLAKLGVGPEALFSTLGRTAARGIET 416
Query: 295 KIVPPKRADMKRSMESLIHHFKLY--TEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKP 352
++ M + + I E V AP+G ++ K
Sbjct: 417 AVIAEYVGVMLQEYKDNIAKGDNVICAPWEMPKQAEGVGFVNAPRGGLSHWIRI-EDGKI 475
Query: 353 YRCKIRAPGYA--------H-LQAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
++ P + L +E G +AD + + S D
Sbjct: 476 GNFQLVVPSTWTLGPRCDKNKLSPVEASLIGTPVADAKRPVEILRTVHSFDPCIAC 531
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 1/105 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E++ V+ L RG E +++ + A + R V A
Sbjct: 15 IEGHLRIEVEVENGKVKNA-YSSSTLFRGLEIILKGRDPRDAQHFTQRTCGVCTYTHALA 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
V+ +G+ IP IR L + H+++
Sbjct: 74 STRCVDNAVGVHIPKNATYIRNLVLGAQYLHDHIVHFYHLHALDF 118
>gi|117618428|ref|YP_857036.1| hydrogenase 2 large subunit [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
gi|117559835|gb|ABK36783.1| hydrogenase-2 large chain [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
Length = 567
Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++G +V + G + RG E++++ A R+ V A
Sbjct: 13 IEGHLRIDCEIEGGVVTKA-WSSGTMWRGMEEIVKGNDPRDAWMIVQRICGVCTSIHAIA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE +G ++P+ Q IR L I H+++ +
Sbjct: 72 SVRAVENAIGAKVPVNAQYIRNLIIAAHNIHDHIVHFYQLSA 113
Score = 98.5 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 17/98 (17%), Positives = 26/98 (26%), Gaps = 18/98 (18%)
Query: 314 HFKLYTEGYHVPVGE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL------ 365
F Y + E EAP+G +++ G K + P +
Sbjct: 454 DFSAYIKTEIPADKEFRGVGFEEAPRGMLSHWIVIKG-GKIENYQAVVPSTWNSGPRNFN 512
Query: 366 ---QAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
E G +AD V + S D
Sbjct: 513 DEPGPYEQSLVGTPVADPAKPLEVVRTIHSFDPCMSCA 550
>gi|20378811|gb|AAM20994.1| hydrogenase large subunit [Bradyrhizobium sp. UPM1171]
Length = 179
Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 39/102 (38%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ LD + V R G + RG E ++ + A + +R+ V
Sbjct: 24 IEGHLRVEANLDSDNVIRNAVSSGTMWRGIEVILRGRDPRDAWAFTERICGVCTGTHALT 83
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI IP IR + + HL++
Sbjct: 84 SVRAVENALGIAIPENANSIRNIMQLCLLVHDHLVHFYHLHA 125
>gi|220904110|ref|YP_002479422.1| nickel-dependent hydrogenase large subunit [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
gi|219868409|gb|ACL48744.1| nickel-dependent hydrogenase large subunit [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
Length = 604
Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 42/100 (42%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR + ++ + V G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHLRCEVNINDDNVITNAVSCGTIFRGIEIILKGRDPRDAWAFTERICGVCTGTHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
AVE LGI+IP +IR L HL+++
Sbjct: 87 SVHAVENALGIDIPDNANIIRNLMQLCLMYHDHLVHLYHL 126
Score = 96.9 bits (240), Expect = 5e-18, Method: Composition-based stats.
Identities = 37/236 (15%), Positives = 68/236 (28%), Gaps = 37/236 (15%)
Query: 193 GNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKH 252
+ +K + + G DL++ + YS L + G
Sbjct: 350 NHSWYKPYPAGKTGLHPWEGITEPHYNPGPNIKGTPTDLKQVDERDRYSWLKTPLWRGHQ 409
Query: 253 GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKI---------VPPKRAD 303
+ + + R++ I V+ LG+ PV+ + +
Sbjct: 410 MEVGPLARMLIGYARKNDDIKG-LVDDFLGRAGGVPVTVLQSTLGRIAARSLELAWAAEK 468
Query: 304 MKRSMESLIHHFKL------YTEGYHV---PVGE--VYAAVEAPKGEFGVYLISDGGNKP 352
M+ + LI + K T + P GE EAP+G G ++ K
Sbjct: 469 MRYFYDRLITNLKNGVRATANTTKWKPESWPTGELRGVGFTEAPRGALGHWVKIRDR-KI 527
Query: 353 YRCKIRAPGYAH---------LQAMEFLCKGHQLA------DVSAILGSLDIVFGE 393
+ P + L A E ++A ++ L S D
Sbjct: 528 ESYQCVVPTTWNGAPRSPDGQLSAYEASLMNTRMAIPEQPLEILRTLHSFDPCLAC 583
>gi|48722|emb|CAA37149.1| HupL [Rhizobium leguminosarum]
Length = 596
Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 41/102 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R+ + +D + R G + RG E +++ + A + +R+ V
Sbjct: 26 IEGHMRVEVNVDENNIIRNAVSTGTMWRGIEVILKNRDPRDAWAFTERICGVCTGTHALT 85
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI IP IR L ++ H+++
Sbjct: 86 SVRAVENALGITIPDNANSIRNLMQLALQVHDHVVHFYHLHA 127
Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats.
Identities = 32/384 (8%), Positives = 78/384 (20%), Gaps = 113/384 (29%)
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE------------ 168
++ A+ L + +++++ + G H + G
Sbjct: 197 ANLMAVAHYLEALDFQKEIVKIHTIFGGKNPHPNWLVGGVPCPINVDGTGAVGAINMERL 256
Query: 169 -LVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIG---------------------- 205
+V I F + + D++ +K G
Sbjct: 257 NMVTSIIDQLIEFNDKV-YVPDIMAIGSFYKDWLYGGGLSGKNVLAYGDVPEHANDYSEA 315
Query: 206 ------------------------------TVKLEDAWGWGFSGVMIRGSGAAWDLRKSQ 235
V S + G +
Sbjct: 316 SLKLPRGAIINGNLAEVFPVDHADPEQIQEFVTHSWYKYPDESKGLHPWDGITEPHYELG 375
Query: 236 PYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLG------------- 282
P ++ + + + + E + R +
Sbjct: 376 PNAKGTKTNIEQLDEGAKYSWIKAPRWRGNAMEVGPLARWVIGYAQNKAEFKDPVDKVLK 435
Query: 283 --KNKVGPVSASDPKIVPPKRA------DMKRSMESLIHHFK----------LYTEGYHV 324
V + ++ + M+ LI + K +
Sbjct: 436 DLGLPVTALFSTLGRTAARALESQWAGYQMRYFQNKLIANIKAGDSNTAFVDKWKPETWP 495
Query: 325 PVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA---------HLQAMEFLCKGH 375
+ EAP+G ++ K + P ++ A E
Sbjct: 496 KEVKGVGFTEAPRGALAHWIRIK-DGKIDNYQCVVPTTWNGSPRDPTGNIGAFEASLMDT 554
Query: 376 QLAD------VSAILGSLDIVFGE 393
+++ + + S D
Sbjct: 555 PMSNPTQPLEILRTIHSFDPCLAC 578
>gi|313683178|ref|YP_004060916.1| nickel-dependent hydrogenase large subunit [Sulfuricurvum kujiense
DSM 16994]
gi|313156038|gb|ADR34716.1| nickel-dependent hydrogenase large subunit [Sulfuricurvum kujiense
DSM 16994]
Length = 564
Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats.
Identities = 50/385 (12%), Positives = 81/385 (21%), Gaps = 85/385 (22%)
Query: 94 IRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHA 153
L H T ++ + L + +L +G H
Sbjct: 159 EGFVKAGRLGLFANGYWGHATYRFTPEENLVHMNHYLEALRIQRELSKAVAIFAGKTPHP 218
Query: 154 AYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD------LLTGNRIFKQRNVNIGTV 207
GGV + + + + I ++ N G
Sbjct: 219 QNLVVGGVTSVADMLNPQRLNDFLFIIKETRDFIERAYIPDMVMLVNAYRDSIKAGEGRA 278
Query: 208 KLEDAWGWGF----------SGVM---IRGSGAAWDLRKSQ------------PYECYSE 242
G+ SGV+ S +D K P Y
Sbjct: 279 VGNFMCCGGYRFGKDQQLFSSGVIKAHNFESIEPFDSSKITEEASRSWYENDAPLSPYEG 338
Query: 243 LDFDIPIGKHGD---------CYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASD 293
+ D + + + E + R V + P
Sbjct: 339 DTTPFYTDLNDDGSLKTEGKYTWVKAPRYDGNVMEVGPLARMIVGYSKNSPIIRPYMERF 398
Query: 294 PKI---------------------VPPKRADMKRSMESLIHHFKLYTEGYH--------V 324
K + +M LI + K Y E
Sbjct: 399 MKRSGMELIDFSTTVGRNAARAVEAQICCDYLFDTMSDLIENIKYYDEDTWTKYVFEELP 458
Query: 325 PVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGH 375
+ E P+G G ++ K + P + A E G
Sbjct: 459 HEAKGAGIFEVPRGVLGHFVRI-EEGKIANYQAVVPTTWNASPKGAKEGRGAYEESLIGI 517
Query: 376 QLAD------VSAILGSLDIVFGEV 394
QLAD V + S D
Sbjct: 518 QLADPSAPLEVLRAVHSFDPCLACA 542
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 42/105 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E+D V G L RG E +++ + + R+ V A
Sbjct: 14 IEGHLRIEVEIDENNVVTEAWASGQLFRGIETILKGRDPRDSGLIAQRICGVCTNVHYRA 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
AVE GIEIP ++IR L + + H+++
Sbjct: 74 SISAVEAAYGIEIPHNAEIIRNLVTLSLFVQDHIVHYYHLHSLDF 118
>gi|27376832|ref|NP_768361.1| uptake hydrogenase large subunit-like protein [Bradyrhizobium
japonicum USDA 110]
gi|12620428|gb|AAG60704.1|AF322012_9 HupL [Bradyrhizobium japonicum]
gi|27349974|dbj|BAC46986.1| hupL [Bradyrhizobium japonicum USDA 110]
Length = 596
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 39/101 (38%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ LD + V R G + RG E ++ + A + +R+ V
Sbjct: 26 IEGHLRIEANLDSDNVIRNAVSSGTIWRGIEVILRGRDPRDAWAFTERICGVCTGTHALT 85
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI IP IR + + HL++
Sbjct: 86 SVRAVENALGITIPENANSIRNIMQLCLLVHDHLVHFYHLH 126
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 28/235 (11%), Positives = 55/235 (23%), Gaps = 48/235 (20%)
Query: 205 GTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMM 264
+ G ++ G + P S+ D + +
Sbjct: 346 FVAHSWYKYPGHCCG-LLPWDGITEPSFELGPKLKGSKTDIKELDEGGKYSWIKAPRWRG 404
Query: 265 EMRESVKIIRQCVNRLLGKNKVGPVSASDPKIV---------------------PPKRAD 303
E + R + GK + + K +
Sbjct: 405 RAVEVGPLARYIIGYAQGKAEFKEPAERLLKGLNLPVTALFSTLGRTAARALECQWAAHQ 464
Query: 304 MKRSMESLIHHFK----------LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPY 353
M+ + L+ + K + + Y EAP+G G ++ K
Sbjct: 465 MRHFQDKLVINIKAGNTATADISRWRPETWRKEAKGYGFTEAPRGALGHWITIKDA-KID 523
Query: 354 RCKIRAPGYA---------HLQAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
+ P ++ A E G +AD + + S D
Sbjct: 524 NYQCVVPTTWNGSPRDSSGNIGAFEASLIGTPMADPQRPLEILRTIHSFDPCLAC 578
>gi|218885374|ref|YP_002434695.1| nickel-dependent hydrogenase large subunit [Desulfovibrio vulgaris
str. 'Miyazaki F']
gi|226693551|sp|P21852|PHNL_DESVM RecName: Full=Periplasmic [NiFe] hydrogenase large subunit;
AltName: Full=NiFe hydrogenlyase large chain; Flags:
Precursor
gi|218756328|gb|ACL07227.1| nickel-dependent hydrogenase large subunit [Desulfovibrio vulgaris
str. 'Miyazaki F']
Length = 567
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 42/356 (11%), Positives = 82/356 (23%), Gaps = 75/356 (21%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDI--PPEL 169
H ++ A L + K H + GGV P+
Sbjct: 195 HPAYYLDPETNLIATAHYLEALRLQVKAARAMAVFGAKNPHTQFTVVGGVTCYDALTPQR 254
Query: 170 VEDIGCWCDSFPSALNDIS--DLLTGNRIFKQRNVNIG---------------------- 205
+ + + ++++ DLL +K G
Sbjct: 255 IAEFEALWKETKAFVDEVYIPDLLVVAAAYKDWTQYGGTDNFITFGEFPKDEYDLNSRFF 314
Query: 206 ---TVKLEDAWGWGFSGVMIRGSGAAWDLRK----SQPYECYSELDFDIPIGKHGDCYDR 258
V D M + P++ ++ + G + +
Sbjct: 315 KPGVVFKRDFKNIKPFDKMQIEEHVRHSWYEGAEARHPWKGQTQPKYTDLHGDDRYSWMK 374
Query: 259 YLVRMMEMRESVKIIRQCVNRLLGKNKVGPV------------------------SASDP 294
M E E+ + + + G KV V +
Sbjct: 375 APRYMGEPMETGPLAQVLIAYSQGHPKVKAVTDAVLAKLGVGPEALFSTLGRTAARGIET 434
Query: 295 KIVPPKRADMKRSMESLIHHFKLY--TEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKP 352
++ M + + I E V AP+G ++ K
Sbjct: 435 AVIAEYVGVMLQEYKDNIAKGDNVICAPWEMPKQAEGVGFVNAPRGGLSHWIRI-EDGKI 493
Query: 353 YRCKIRAPGYA--------H-LQAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
++ P + L +E G +AD + + S D
Sbjct: 494 GNFQLVVPSTWTLGPRCDKNKLSPVEASLIGTPVADAKRPVEILRTVHSFDPCIAC 549
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 1/105 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E++ V+ L RG E +++ + A + R V A
Sbjct: 33 IEGHLRIEVEVENGKVKNA-YSSSTLFRGLEIILKGRDPRDAQHFTQRTCGVCTYTHALA 91
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
V+ +G+ IP IR L + H+++
Sbjct: 92 STRCVDNAVGVHIPKNATYIRNLVLGAQYLHDHIVHFYHLHALDF 136
>gi|123745|sp|P18636|MBHL_RHILV RecName: Full=Uptake hydrogenase large subunit; AltName:
Full=Hydrogenlyase; AltName: Full=Membrane-bound
hydrogenase large subunit
gi|536799|emb|CAA85431.1| HUPL [Rhizobium leguminosarum]
Length = 596
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 41/102 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R+ + +D + R G + RG E +++ + A + +R+ V
Sbjct: 26 IEGHMRVEVNVDENNIIRNAVSTGTMWRGIEVILKNRDPRDAWAFTERICGVCTGTHALT 85
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI IP IR L ++ H+++
Sbjct: 86 SVRAVENALGITIPDNANSIRNLMQLALQVHDHVVHFYHLHA 127
Score = 97.7 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 32/384 (8%), Positives = 78/384 (20%), Gaps = 113/384 (29%)
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE------------ 168
++ A+ L + +++++ + G H + G
Sbjct: 197 ANLMAVAHYLEALDFQKEIVKIHTIFGGKNPHPNWLVGGVPCPINVDGTGAVGAINMERL 256
Query: 169 -LVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIG---------------------- 205
+V I F + + D++ +K G
Sbjct: 257 NMVTSIIDQLIEFNDKV-YVPDIMAIGSFYKDWLYGGGLSGKNVLAYGDVPEHANDYSEA 315
Query: 206 ------------------------------TVKLEDAWGWGFSGVMIRGSGAAWDLRKSQ 235
V S + G +
Sbjct: 316 SLKLPRGAIINGNLAEVFPVDHADPEQIQEFVTHSWYKYPDESKGLHPWDGITEPHYELG 375
Query: 236 PYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLG------------- 282
P ++ + + + + E + R +
Sbjct: 376 PNAKGTKTNIEQLDEGAKYSWIKAPRWRGNAMEVGPLARWVIGYAQNKAEFKDPVDKVLK 435
Query: 283 --KNKVGPVSASDPKIVPPKRA------DMKRSMESLIHHFK----------LYTEGYHV 324
V + ++ + M+ LI + K +
Sbjct: 436 DLGLPVTALFSTLGRTAARALESQWAGYQMRYFQNKLIANIKAGDSNTAFVDKWKPETWP 495
Query: 325 PVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA---------HLQAMEFLCKGH 375
+ EAP+G ++ K + P ++ A E
Sbjct: 496 KEVKGVGFTEAPRGRLAHWIRIK-DGKIDNYQCVVPTTWNGSPRDPTGNIGAFEASLMDT 554
Query: 376 QLAD------VSAILGSLDIVFGE 393
+++ + + S D
Sbjct: 555 PMSNPTQPLEILRTIHSFDPCLAC 578
>gi|150008430|ref|YP_001303173.1| stable NiFe hydrogenase large subunit [Parabacteroides distasonis
ATCC 8503]
gi|255014165|ref|ZP_05286291.1| stable NiFe hydrogenase large subunit [Bacteroides sp. 2_1_7]
gi|256841586|ref|ZP_05547093.1| stable NiFe hydrogenase large subunit [Parabacteroides sp. D13]
gi|262383265|ref|ZP_06076401.1| stable NiFe hydrogenase large subunit [Bacteroides sp. 2_1_33B]
gi|149936854|gb|ABR43551.1| stable NiFe hydrogenase large subunit [Parabacteroides distasonis
ATCC 8503]
gi|256737429|gb|EEU50756.1| stable NiFe hydrogenase large subunit [Parabacteroides sp. D13]
gi|262294163|gb|EEY82095.1| stable NiFe hydrogenase large subunit [Bacteroides sp. 2_1_33B]
Length = 573
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 46/396 (11%), Positives = 87/396 (21%), Gaps = 102/396 (25%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H T ++ A L E +++++ + G H Y G
Sbjct: 162 GQLGIFANGYWGHPDYKLTPEQNLIATVHYLDALEWQKEVVKVHAVFGGKNPHPNYIVGG 221
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALND---------ISDLLTGNRIFKQRNVNIG----T 206
E L + I DLL ++K + IG
Sbjct: 222 MPCSIDLNEANAINADRLALVKQKLEEAKTFINQVYIPDLLMIANVYKDKWSKIGGGVRN 281
Query: 207 VKLEDAWGWGFSG---------------------------VMIRGSGAAWDLRKS----- 234
+ G K
Sbjct: 282 YLSYGDYPVFDLGEVESYKIPRGIVLDRDLSKVHPVDANSPEEIKEYIYHSWYKYTQGDK 341
Query: 235 ---QPYECYSELDFDIPIGKHG-------DCYDRYLVRMMEMRESVKIIRQCVNRLLGKN 284
PYE + L++ P + + + E E + R V GK
Sbjct: 342 AGLHPYEGETHLEYTGPRPPYKLLDVEDKYSWIKTPRWKQEPMEVGPLARLIVAYAAGKE 401
Query: 285 KVGPVSASDPKIVPPKRADM-------------------------------KRSMESLIH 313
+ + + + + +S +
Sbjct: 402 PQKSIVDETLRQLDLPVDALFSTLGRTAARGLECRMAADWALEFFNQLIKNLENGDSRMA 461
Query: 314 HFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH--------- 364
+ + + EAP+G +++ D + ++ P +
Sbjct: 462 NSAEWERENWPDHEQGVGLAEAPRGALAHFIVIDKN-RVKNYQMVVPTTWNASPRDENGV 520
Query: 365 LQAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
L A E G + D + + S D
Sbjct: 521 LSAYESALIGTPIYDPKQPLEILRTIHSFDPCLACA 556
Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 27/195 (13%), Positives = 54/195 (27%), Gaps = 31/195 (15%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++G ++ G + RG E +++ + + R+ V A
Sbjct: 13 IEGHLRVEAEIEGGTIKNA-YSSGTMVRGIENIVKDRDPRDVWAFVGRVCGVCTSIHSLA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV---------------- 123
AVE GI IP ++R + + + H ++
Sbjct: 72 SVRAVENARGIVIPPNASMVRNIMQAVLYMHDHTVHFYQLHALDWVDVVSALKADPKAAA 131
Query: 124 --------------GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL 169
G T ++ A+G H Y +
Sbjct: 132 LLAQQLSPWAKNTEGYFTATQERLKKFVASGQLGIFANGYWGHPDYKLTPEQNLIATVHY 191
Query: 170 VEDIGCWCDSFPSAL 184
++ + +
Sbjct: 192 LDALEWQKEVVKVHA 206
>gi|90578796|ref|ZP_01234606.1| quinone-reactive Ni/Fe hydrogenase, large subunit [Vibrio angustum
S14]
gi|90439629|gb|EAS64810.1| quinone-reactive Ni/Fe hydrogenase, large subunit [Vibrio angustum
S14]
Length = 567
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 48/357 (13%), Positives = 79/357 (22%), Gaps = 90/357 (25%)
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
L+ L E + G H GGV + + F
Sbjct: 190 LSHYLKALEVQRIGAEMMAIWGGKNPHPQSIVVGGVTCVRDMLDPARLQEFKQKFVHVAE 249
Query: 186 DIS-----DLLTGNRIFKQRNVNIGTVKLEDAWG----------WGFSGVMIR------- 223
I D+L F + +G + F+G +IR
Sbjct: 250 FIERAYQADILMAAAAFGKEPSVLGGCNVSTFMCSESIQLNEEEQLFTGGVIRNKDLTKA 309
Query: 224 --------GSGAAWDLR----KSQPYECYSELDFDIPIGKH-------------GDCYDR 258
P++ + + I + + +
Sbjct: 310 ENVDLSLIAEDVTHSWYNADKPQHPFDGTTIPEHTPFIERDTLEGKRPTINEAGKYSWVK 369
Query: 259 YLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR-----------ADMKRS 307
+ E + VN G V PV K A M +
Sbjct: 370 SPRYNGDPVEVGPLATIAVNYAKGNPYVVPVVNEFLKTTGLPAGALFTTLGRTAARMLHT 429
Query: 308 ME--------------SLIHHFKLYTEGYHVPVGE--VYAAVEAPKGEFGVYLISDGGNK 351
+ +L Y E P E +EAP+G +L
Sbjct: 430 LIIARNGLTTFESMVANLNSDQTTYIEPTIDPKKEYKGVGVIEAPRGLLSHWLRIK-DGL 488
Query: 352 PYRCKIRAPGYAH---------LQAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
+ P + + E G +L D V ++ S D
Sbjct: 489 VENYQAVVPTTWNASPIDGNGKIAPYEASLVGLKLEDPTKPLEVLRVIHSFDPCMAC 545
Score = 98.5 bits (244), Expect = 2e-18, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 40/101 (39%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +ELD V L RG E +++ +T R+ V +
Sbjct: 13 IEGHLRIEVELDANNVIEKAYASSTLFRGLEIIMKGRTPYDVGLLMQRICGVCTSSHYLC 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
LAVE + ++PI + IR L + H+++
Sbjct: 73 GTLAVENAINAQVPINAKYIRSLILTSLEMHDHIVHFYLLH 113
>gi|78358795|ref|YP_390244.1| periplasmic (NiFe) hydrogenase large subunit, isozyme 2
[Desulfovibrio desulfuricans subsp. desulfuricans str.
G20]
gi|78221200|gb|ABB40549.1| periplasmic (NiFe) hydrogenase, large subunit, isozyme 2
[Desulfovibrio desulfuricans subsp. desulfuricans str.
G20]
Length = 554
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 41/339 (12%), Positives = 73/339 (21%), Gaps = 74/339 (21%)
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVH-----QDIPPELVEDIGCWCDSFPS 182
G + +L +G HA GG+ + I C F
Sbjct: 199 HYFEGLRIQLELGRAMALFAGKNPHAQSMVVGGMTCYDSLRPEVIGHFRKIWEHCKEFVE 258
Query: 183 ALNDISDLLTGNRIF-----------------------KQRNVNIGTVKLEDAWGWGFSG 219
LL R K G + D
Sbjct: 259 NAMMPDILLMTRRYPEALAYGRTSNFFAFADFHDPVTGKDPYFTSGVLWGNDLTKHEELD 318
Query: 220 VMIRGSGAAWDLRKSQ----PYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQ 275
A + PYE +E + K + + E E+ + R+
Sbjct: 319 PGHINEHVARSWYEGDTPRTPYEGATEPHYTSYEDKEKYSWSKAPRYKNEAMETGPLARR 378
Query: 276 CVNRLLGKNKVGPVSASDPK---------------------IVPPKRADMKRSMESLIHH 314
+ + + + + K M+ ++
Sbjct: 379 ALAYARKEQETRTMLDTFFKDSGMKPDQLFSTMGRTVCRVVETTMLMRRMQGWIDDTEAR 438
Query: 315 FK-----LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH----- 364
K +YTE +G ++ K + ++ P +
Sbjct: 439 IKAGEDTIYTEWKMPDSARGVGFCCVTRGALSHWIDIKEA-KIHNFQMVVPSTWNLGPRC 497
Query: 365 ----LQAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
L A E G D + + S D
Sbjct: 498 ANGKLSAGEQSLIGCPCPDPDRPVEILRTIHSFDPCIAC 536
Score = 101 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 1/101 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L++ +EL+ V+ L RG E +++ + A + R V
Sbjct: 21 IEGHLKIEVELENNKVKDA-WVSTQLFRGIEMILKGRPPEDAPLFTQRACGVCTNTHALT 79
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+E L I++P QL+R L + HL++
Sbjct: 80 SIRAIEDALEIKVPPLAQLMRHLILSALIVHDHLVHFYHLH 120
>gi|51244427|ref|YP_064311.1| Ni/Fe-hydrogenase, large subunit [Desulfotalea psychrophila LSv54]
gi|50875464|emb|CAG35304.1| probable Ni/Fe-hydrogenase, large subunit [Desulfotalea
psychrophila LSv54]
Length = 566
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E+DG V + G ++RG E +++ + A + R+ V A
Sbjct: 13 IEGHLRVDIEVDGGKVTKA-WSSGQMYRGIENILKGRDPRDAWMFVQRICGVCTTVHGLA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE L + IP+ QL+R + I + H+++ T +
Sbjct: 72 SVRAVEDALQLPIPLNAQLVRNMVQAIHCLQDHIVHFYTLSA 113
Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats.
Identities = 42/392 (10%), Positives = 81/392 (20%), Gaps = 101/392 (25%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H ++ A++ L + + K G H G
Sbjct: 162 GQLGPFANAYWGHPAMKLPPEANLMAVSHYLEALDYQRKATQALGIIGGKNPHVQNLCVG 221
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
G+ ++ + + F L + K +G G +
Sbjct: 222 GIANNLNQDNETGLTMERLYFIKQLIEEVRDFIKMVYQSDVAAIGALYKEWIPYGAGVTN 281
Query: 220 VMIRGS--------------------------------------------GAAWDLRKS- 234
M AW
Sbjct: 282 YMAAPDMFTDVEGTKGDLPGGTIFNADLSTVKPFTTISDSYFKENVEESIARAWYDGDWS 341
Query: 235 -QPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNK-------- 285
P+E ++ + + + + + + + + V G
Sbjct: 342 KNPFEEDTDPKYTDFQDEGRYSWMKAPRFQGKPMQVGPLAQVLVGYAQGHELTVKAANDF 401
Query: 286 -----------------VGPVSASDPKIVPPKRADMKRSM---------ESLIHHFKLYT 319
G + + + RA M + +L
Sbjct: 402 LGRLNSVAGTNLGPEILHGTIGRHAGRAI---RAGMMADLALKHWDLLVNNLATGDYEIF 458
Query: 320 EGYHVPVGE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAM 368
P GE EAP+G ++I K + P +
Sbjct: 459 NQPVFPKGEQRGVGIHEAPRGILSHWIII-QDGKIKNYQAVVPSTWNAGPRDGQGQPGPY 517
Query: 369 EFLCKGHQLA------DVSAILGSLDIVFGEV 394
E G+ +A +V + S D
Sbjct: 518 EASLVGNPIAEPEKPLEVLRTVHSFDPCIACA 549
>gi|251789033|ref|YP_003003754.1| hydrogenase 2 large subunit [Dickeya zeae Ech1591]
gi|247537654|gb|ACT06275.1| nickel-dependent hydrogenase large subunit [Dickeya zeae Ech1591]
Length = 568
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ V + G + RG E++++ + A R+ V A
Sbjct: 13 IEGHLRIDCEIENGKVIKA-WSSGTMWRGMEEIVKGRDPRDAWMIVQRICGVCTTVHAIA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LG+ +P+ Q IR L I H+++ +
Sbjct: 72 SVRAVENALGLNVPVNAQYIRNLILAAHSIHDHIVHFYQLSA 113
Score = 93.1 bits (230), Expect = 6e-17, Method: Composition-based stats.
Identities = 42/390 (10%), Positives = 80/390 (20%), Gaps = 96/390 (24%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYF--- 156
L H +++ A+ L E + G H
Sbjct: 162 GQLGIFANGYWGHPAMSLPPEVNLIAVAHYLQALECQRDANRIVAILGGKSPHIQNLAVG 221
Query: 157 -RPGGVHQDIP-----------PELVEDIGCWCDSFPS---------------------A 183
++ D P ++ +G + +
Sbjct: 222 GVANPINLDAPSVLNLERLMYVKSFIDRLGDFIEQVYKVDCAVIAAHYPQWLTLGRGADH 281
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS-------GVMIRGSGAAWDLRKSQP 236
+ +L T N+ + + + IR SG + QP
Sbjct: 282 YLSVPELPTDNKNGSFLLAGGYIENSDLSRYRPITSHSDKFLIDGIRESGKHAWYQDDQP 341
Query: 237 YECYSELDFDIPIGKHGD---CYDRYLVRMMEMRESVKIIR------------------- 274
+ L G H D + + + E +
Sbjct: 342 LAPWEGLTRPNYTGWHEDGKYSWVKSPTFYGKTVEVGPLAWLLCGLAAKHKDTLAHFDQV 401
Query: 275 ----QCVNRL----------LGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTE 320
Q ++ LG+ V K ++ H
Sbjct: 402 KAAYQALSGHQLEEKHLHSTLGRVIGRTVHCCVLKDTLAQQWQALVDNIGKGDHQTFIKP 461
Query: 321 GYHVP-VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA-----HL----QAMEF 370
+ E P+G +++ K + P + E
Sbjct: 462 DFSPDTEFHGVGFGEMPRGMLSHWVVFK-NGKITNYQAVVPSTWTSCPRNGDDKPGPYEQ 520
Query: 371 LCKGHQLAD------VSAILGSLDIVFGEV 394
G +AD V + S D
Sbjct: 521 SLVGTPVADPHKPLEVVRTIHSFDPCMSCA 550
>gi|317154279|ref|YP_004122327.1| nickel-dependent hydrogenase large subunit [Desulfovibrio
aespoeensis Aspo-2]
gi|316944530|gb|ADU63581.1| nickel-dependent hydrogenase large subunit [Desulfovibrio
aespoeensis Aspo-2]
Length = 572
Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats.
Identities = 41/369 (11%), Positives = 85/369 (23%), Gaps = 78/369 (21%)
Query: 102 LYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGV 161
+++ + H V +++ A L + K H + GGV
Sbjct: 187 IFTNAYFLGGHPAYVLPPEVNLIATDHYLKALHMQVKAARAMAVWGAKNPHTQFTVMGGV 246
Query: 162 HQDI--PPELVEDIGCWCDSFPSALNDIS--DLLTGNRIFKQRNVNIGTVKLEDAWGWGF 217
+ + D + D DLL +K GT +
Sbjct: 247 TCYEGLTDKYINDFLALYKEVKDFVLDCYIPDLLAVAGFYKDWAAIGGTTNFMSCGEFPV 306
Query: 218 SG---------------------------VMIRGSGAAWDLRK----SQPYECYSELDFD 246
G K PY ++ +
Sbjct: 307 PGGETDLTSRYVKPGVIMNRNLGQVDALDPSKIAEHVKHSWYKDGAAQHPYNGVTDPMYT 366
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
K + + + E + VN LG + K + +
Sbjct: 367 SLDDKTKYSWMKAPRYNGKAVEVGPLATCLVNYGLGHPEFKTYVDFVLKALGVGPEALFS 426
Query: 307 SM-------------------------ESLIHHFKLYTEGYHVPV-GEVYAAVEAPKGEF 340
++ E++ + + + +P + V AP+G
Sbjct: 427 TLGRTGARGIECLIVTLKTDEWVNDLKENVAKGDRDICKDWDMPASAQGVGWVNAPRGAL 486
Query: 341 GVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCK-GHQLAD------VSAIL 384
++ K ++ P ++ +E +AD + +
Sbjct: 487 SHWINIKDS-KIDNFQLVVPSTWNIGPRCDNDLPGPLEEALLDNTPIADPERPVEILRTV 545
Query: 385 GSLDIVFGE 393
S D
Sbjct: 546 HSYDPCIAC 554
Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats.
Identities = 20/113 (17%), Positives = 38/113 (33%), Gaps = 3/113 (2%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ ++ + V L RG E +++ + A + R V A
Sbjct: 26 IEGHLRVEAVVENGKIIDVR-SSSQLFRGLEIILKGRDPRDAQHFTQRSCGVCTYTHALA 84
Query: 80 YALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
V+ +G++ +P +IR L + HL++
Sbjct: 85 SVRCVDNAVGVDKVLPRNATIIRNLVLAAQFMHDHLVHFYHLHALDFVDVSAC 137
>gi|288941750|ref|YP_003443990.1| nickel-dependent hydrogenase large subunit [Allochromatium vinosum
DSM 180]
gi|68272122|gb|AAY89334.1| membrane-bound hydrogenase large subunit [Allochromatium vinosum]
gi|288897122|gb|ADC62958.1| nickel-dependent hydrogenase large subunit [Allochromatium vinosum
DSM 180]
Length = 576
Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ ++DG + + G + RG E +++ + A + R+ V + A
Sbjct: 13 IEGHLRIEAQMDGATIAQA-YSSGTMVRGIETILKGRDPRDAWAFVQRICGVCTLVHGIA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE L IE+P+ QLIR L I H+++
Sbjct: 72 SVRAVEDALRIELPLNAQLIRNLMIGAQYIHDHVMHFYHLHA 113
Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats.
Identities = 46/399 (11%), Positives = 89/399 (22%), Gaps = 105/399 (26%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H ++ A+ L + F+ G H + G
Sbjct: 162 GQLGIFANGYWGHPAYRLPPEANLMAVAHYLEALAWQRDTAKFHAIFGGKNPHPNFVVGG 221
Query: 160 GVHQDIPPELVEDIGCWCDSFPS------------ALNDISDLLTGNRIFKQRNVNIGTV 207
+ + D + + + +R +G
Sbjct: 222 VPSPIDLDSDSALNAKRLAEVRNLIQSMRTFVDQVYVPDTLAIAGFYKDWGERGEGLGNF 281
Query: 208 KLEDAWGWGF-----------------------------SGVMIRGSGAAWD------LR 232
G +G + +W R
Sbjct: 282 LCYGDLPTGASLDPATFLFPRGAILDRDLSTIHEVDLEATGEIQEFVNHSWYEYSVGNDR 341
Query: 233 KSQPYECYSELDFDIPIG----------KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLG 282
PYE + L++D G G + + E + R + G
Sbjct: 342 GLHPYEGQTNLEYDRRGGVAPPYKQLDVSDGYSWLKAPRWKGRSVEVGPLARVLMLYATG 401
Query: 283 KN---------------KVGPVSASDPKIVPPKRA------DMKRSMESLIHHFK----- 316
+ V + ++ + M+ + LI + K
Sbjct: 402 HDQARELVDSTLSRLDLPVDALYSTLGRTAARALESKILVDAMQGWYDGLIANVKSGDTK 461
Query: 317 -----LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH------- 364
L+ + +EAP+G G +++ + + P +
Sbjct: 462 TFNETLWEPSSWPSRAQGVGIMEAPRGALGHWIVI-EDGRIANYQAVVPSTWNAGPRDGR 520
Query: 365 --LQAMEFLCK-GHQLADV------SAILGSLDIVFGEV 394
A E + HQL DV + S D
Sbjct: 521 GQAGAYEAALQDNHQLVDVKQPIEILRTIHSFDPCIACA 559
>gi|89093070|ref|ZP_01166021.1| Nickel-dependent hydrogenase, large subunit [Oceanospirillum sp.
MED92]
gi|89082720|gb|EAR61941.1| Nickel-dependent hydrogenase, large subunit [Oceanospirillum sp.
MED92]
Length = 108
Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 34/107 (31%), Gaps = 17/107 (15%)
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
M+ ++ L G G+ VEA +G G +L K +I AP
Sbjct: 1 MQSWIKQLKPGEPFCAHGKMPKEGQGVGMVEAARGSLGHWLEVK-KGKISNYQIIAPTTW 59
Query: 364 HLQ---------AMEFLCKGHQLAD-------VSAILGSLDIVFGEV 394
+ A+E +G + + V I+ S D
Sbjct: 60 NFSPRDEQGVPGALEQALEGAPVREGEKDPVAVQHIVRSFDPCMVCT 106
>gi|312113744|ref|YP_004011340.1| nickel-dependent hydrogenase large subunit [Rhodomicrobium
vannielii ATCC 17100]
gi|311218873|gb|ADP70241.1| nickel-dependent hydrogenase large subunit [Rhodomicrobium
vannielii ATCC 17100]
Length = 598
Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 40/102 (39%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D + V R G + RG E +++ + A + R+ V
Sbjct: 27 IEGHMRCEVNVDDDNVIRNAVSTGTMWRGLEVILKGRDPRDAWAFTQRICGVCTGTHALT 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE L I+IP +IR + + HL++
Sbjct: 87 SVRAVEDALKIQIPENANIIRNIMQLTLQTHDHLVHFYHLHA 128
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 23/216 (10%), Positives = 47/216 (21%), Gaps = 47/216 (21%)
Query: 224 GSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGK 283
G K P + + + + E + R + G
Sbjct: 366 WDGVTEPNFKLGPNLVGTRTNIKEIDESAKYSWIKAPRWKGHAMEVGPLARYVIGYAKGD 425
Query: 284 NKVGPVSASDPKIV---------------------PPKRADMKRSMESLIHHFK------ 316
++ K + M ++ LI + K
Sbjct: 426 KEITEQLTLVLKTLDVPVSALFSTLGRTAARGLECQWAAHKMSYFLDKLIANVKAGDTAT 485
Query: 317 ----LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA--------- 363
+ + EAP+G G ++ K + P
Sbjct: 486 ANTASWDPSTWPAEVKGVGFTEAPRGALGHWIKIK-NGKIENYQCVVPTTWNGSPRDNEG 544
Query: 364 HLQAMEFLCKGHQLA------DVSAILGSLDIVFGE 393
++ A E ++ ++ L S D
Sbjct: 545 NIGAFEAALLNTKVERAEEPVEILRTLHSFDPCLAC 580
>gi|53802531|ref|YP_112702.1| nickel-iron hydrogenase, large subunit [Methylococcus capsulatus
str. Bath]
gi|19421552|gb|AAK52318.1| NiFe hydrogenase large subunit [Methylococcus capsulatus str. Bath]
gi|53756292|gb|AAU90583.1| nickel-iron hydrogenase, large subunit [Methylococcus capsulatus
str. Bath]
Length = 597
Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 40/102 (39%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D + + R G + RG E +++ + A + +R+ V
Sbjct: 27 IEGHMRCEVNVDDDNIIRNAVSSGTMWRGLEVILKGRDPRDAWAFTERICGVCTGTHALT 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI IP IR + + HL++
Sbjct: 87 SVRAVEDALGIAIPENANSIRNIMQLTLQAHDHLVHFYHLHA 128
Score = 94.2 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 33/132 (25%), Gaps = 16/132 (12%)
Query: 277 VNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAP 336
+ R + A + K ++ + + + EAP
Sbjct: 449 LGRTAARGLEAQYCAHLMRHFQDKLVSNIKAGDLATANTAKWEPDTWPKEAMGAGTTEAP 508
Query: 337 KGEFGVYLISDGGNKPYRCKIRAPGYA---------HLQAMEFLCKGHQL--AD----VS 381
+G G ++ K + P ++ A E ++ D +
Sbjct: 509 RGALGHWIKIK-DGKIDNYQCIVPTTWNGSPRDPKGNIGAFEASLMNTKVENPDQPLEIL 567
Query: 382 AILGSLDIVFGE 393
L S D
Sbjct: 568 RTLHSFDPCLAC 579
>gi|238759101|ref|ZP_04620270.1| Hydrogenase-2 large chain [Yersinia aldovae ATCC 35236]
gi|238702649|gb|EEP95197.1| Hydrogenase-2 large chain [Yersinia aldovae ATCC 35236]
Length = 564
Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats.
Identities = 30/129 (23%), Positives = 48/129 (37%), Gaps = 5/129 (3%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ V + G + RG E++++ A R+ V A
Sbjct: 13 IEGHLRIDCEIEDGKVIKA-WSSGTMWRGMEEILQGNDPRDAWMIVQRICGVCTTIHAIA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKL 139
AVE LG+E+P+ Q IR L I H+++ + AL +
Sbjct: 72 SVRAVENALGMEVPVNAQHIRNLILAAHSIHDHIVHFYQLS----ALDWVDITSALQASP 127
Query: 140 MVFYERASG 148
SG
Sbjct: 128 QKAAAMLSG 136
Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats.
Identities = 38/387 (9%), Positives = 78/387 (20%), Gaps = 93/387 (24%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYF--- 156
L H +++ A+ L E + G H
Sbjct: 162 GQLGIFANGYWGHPAMALPPEVNLIAVAHYLQALECQRDANRIVAVLGGKTPHIQNLAVG 221
Query: 157 -RPGGVHQDIP-----------PELVEDIGCWCDSFPSALNDIS--------------DL 190
++ D+P ++ +G + + + D
Sbjct: 222 GVANPINLDMPSVLNLERLMLVKSFIDRLGSFIEQVYKVDTAVIAAHYPNWLNLGKGADD 281
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVM-----------IRGSGAAWDLRKSQPYEC 239
+ G + I SG + +P
Sbjct: 282 YLSVPELPTDRKGETFLLPGGYLENGTFRPITNHNDPYLIEGIAESGKHAWYQDDEPLAP 341
Query: 240 YSELDFDIPIGKHGD---CYDRYLVRMMEMRESVKIIR---------------------- 274
+ G D + + + E +
Sbjct: 342 WEGKTNPNYTGWQEDGKYSWVKAPTFYGKTVEVGPLAWLMCGLAAGHTLTKQHFTDIGAA 401
Query: 275 ------QCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV-- 326
Q + + +G + ++ + + E + P
Sbjct: 402 YQKLSGQAITAEQLPSTLGRIIGRAVHCCVLHETLAQQWTALVTNIGTGDVETFIKPDIP 461
Query: 327 --GE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCK 373
GE EAP+G +++ K + P + E
Sbjct: 462 LTGEIRGVGFEEAPRGMLSHWVVIK-DGKIANYQAVVPSTWNAGPRNYNDEPGPYEQALV 520
Query: 374 GHQLAD------VSAILGSLDIVFGEV 394
G +AD V + S D
Sbjct: 521 GTPVADPAKPLEVVRTIHSFDPCMSCA 547
>gi|110598455|ref|ZP_01386726.1| Nickel-dependent hydrogenase, large subunit [Chlorobium
ferrooxidans DSM 13031]
gi|110339905|gb|EAT58409.1| Nickel-dependent hydrogenase, large subunit [Chlorobium
ferrooxidans DSM 13031]
Length = 572
Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats.
Identities = 45/394 (11%), Positives = 89/394 (22%), Gaps = 100/394 (25%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H +++ A+ L + +++++ + G H Y G
Sbjct: 163 GQLGIFANGYWGHPGYKLPPEVNLIAVAHYLEALDFQKEIIKIHTIFGGKNPHPNYLVGG 222
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALND---------ISDLLTGNRIFKQRNVNIGTVKL- 209
P ++D I DL+ +K G
Sbjct: 223 MACAIDPNSDTAINIERLSMIKKIIDDTQTFIDQVYIPDLIAIAGYYKGWLHGGGLGNYL 282
Query: 210 -------------------------------------------EDAWGWGFSGVMIRGSG 226
E+ ++ G G
Sbjct: 283 SYGDFPETTLADFKTLLWPRGAILGKDLTTIHDVDPRDAAQVTEEVSHSWYTYKGGDGKG 342
Query: 227 AAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKN-- 284
++ P + F + + E + R + G
Sbjct: 343 LHPWKGETTPNYTGPKPPFQYLDTDKKYSWLKTPRWKNNPMEVGPLARVLIAYAKGDPMI 402
Query: 285 -----------KVGPVSASDPKIVPPKRAD--------MKRSMESLIHHFK--------- 316
+VGP + R M+ + L+ + K
Sbjct: 403 KDTVGLVLSKLEVGPEALFSTLGRTAARGIECKQTAGFMRHYYDQLVANIKTGDYRTFNS 462
Query: 317 -LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA---------HLQ 366
+ + + EAP+G G ++ K +I P ++
Sbjct: 463 ERWDPDSWPKECKGFGYTEAPRGSLGHWIHI-EDEKIKEYQIVVPSTWNASPRDVNGNIG 521
Query: 367 AMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
A E KG +A+ + + S D
Sbjct: 522 AYESALKGTPVANPDQPLEILRTVHSFDPCLACA 555
Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats.
Identities = 34/196 (17%), Positives = 59/196 (30%), Gaps = 30/196 (15%)
Query: 18 PAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQE 77
P G LR+ +L+ V G + RG E +++ + A + +R+ V
Sbjct: 11 PRIEGHLRIEAKLNESNVIEEAYSSGTMWRGIEVILKGRDPRDAWAFTERICGVCTTVHA 70
Query: 78 HAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA----------------- 120
A VE LGI+IP ++IR L + HL++
Sbjct: 71 LASVRCVEDALGIDIPANARIIRNLMNATQVTQDHLVHFYHLHALDWVDVVSALKADPKQ 130
Query: 121 ---------MDVGALTPPLWGFEEREKLMVFYERAS----GSRMHAAYFRPGGVHQDIPP 167
+ ++R V + G H Y P V+
Sbjct: 131 ASVIAQSISAWPKSSPGYFKDLQQRLIGFVDSGQLGIFANGYWGHPGYKLPPEVNLIAVA 190
Query: 168 ELVEDIGCWCDSFPSA 183
+E + +
Sbjct: 191 HYLEALDFQKEIIKIH 206
>gi|83592498|ref|YP_426250.1| nickel-dependent hydrogenase, large subunit [Rhodospirillum rubrum
ATCC 11170]
gi|83575412|gb|ABC21963.1| Nickel-dependent hydrogenase, large subunit [Rhodospirillum rubrum
ATCC 11170]
Length = 596
Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 41/102 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ L +D V R G + RG E +++ + A + R+ V
Sbjct: 26 IEGHLRIELNVDEANVIRNAVSTGTMWRGIELILKGRDPRDAWAFTQRICGVCTGTHALT 85
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A+E LGI+IP IR + ++ HL++
Sbjct: 86 SVRAIENTLGIQIPENANSIRNIMQLCLQVHDHLVHFYHLHA 127
Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats.
Identities = 34/392 (8%), Positives = 75/392 (19%), Gaps = 111/392 (28%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H ++ A+ L + +++++ + G H + G
Sbjct: 188 HPAYRLPPEANLMAVAHYLEALDFQKEIVKIHAVFGGKNPHPNWLVGGVPCAINLDGAGA 247
Query: 172 DIGCWCDSF------------PSALNDISDLLTGNRIFKQRNVNIG-------------- 205
+ + DL+ +K G
Sbjct: 248 VGAVNIERLNLVSSIIDRATTFVEQVYLPDLIAIAGFYKDWQYGGGLSSTSVLAYGDIPD 307
Query: 206 --------------------------------------TVKLEDAWGWGFSGVMIRGSGA 227
V + + G
Sbjct: 308 RANDYSPSNLLMPSGAIINGELTRIHPVDLTDPEQIQEFVSHSWYRYGDEAKGLHPWDGV 367
Query: 228 AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVG 287
+ P + Y + E + R + G +
Sbjct: 368 TESHFELGPRSKVENRRIETLDESAKYSYLKAPRWRGHAMEVGPLARYILGYAQGNPEFK 427
Query: 288 PVSASDPKIVPPKRADMKRSM---------------------ESLIHHFK---------- 316
+ + + + + ++ + L+ + K
Sbjct: 428 EPTEALLRQLDLPVGALFSTLGRTAARGLECQWAAGKLRYFFDKLMANLKAGDLNTANTT 487
Query: 317 LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQA 367
+ + EAP+G ++ K + P + + A
Sbjct: 488 KWAPATWPASAKGVGFTEAPRGALAHWVQI-EAGKIANYQCVVPTTWNGSPRDPAGAIGA 546
Query: 368 MEFLCKGHQLAD------VSAILGSLDIVFGE 393
E LAD V L S D
Sbjct: 547 FEAALLDTPLADPQQPLEVLRTLHSFDPCLAC 578
>gi|119356801|ref|YP_911445.1| nickel-dependent hydrogenase, large subunit [Chlorobium
phaeobacteroides DSM 266]
gi|119354150|gb|ABL65021.1| nickel-dependent hydrogenase, large subunit [Chlorobium
phaeobacteroides DSM 266]
Length = 572
Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats.
Identities = 45/382 (11%), Positives = 87/382 (22%), Gaps = 100/382 (26%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H +++ A+ L + +++++ + G H Y G P
Sbjct: 175 HPAYRLPPEVNLLAVAHYLEALDFQKEIIKIHTIFGGKNPHPNYLVGGMACAIDPNSDTA 234
Query: 172 DIGCWCDSFPSALND---------ISDLLTGNRIFKQRNVNIGTVKL------------- 209
++D I DL+ +K G
Sbjct: 235 INIERFALIKKIIDDTNTFIDQVYIPDLIAIAGYYKDWLYGGGLGNYLSYGDFPENSLDD 294
Query: 210 -------------------------------EDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
E+ ++ G +++P
Sbjct: 295 YKTLLWPRGAILNRDLSNVIDVDPRDSAQVTEEVSHSWYTYSKGDSKGLHPWEGETKPAY 354
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRL-------------LGKNK 285
+ F+ + + E + R V LGK +
Sbjct: 355 TGPKPPFEFLDTDKKYSWLKTPRWKNHAMEVGPLARVLVAYAKGDPMIKDTVGMVLGKLQ 414
Query: 286 VGPVSASDPKIVPPKRADMKRSMESLIHHF------------------KLYTEGYHVPVG 327
VGP + R + + HF +
Sbjct: 415 VGPEALFSTLGRTAARGIECKQTAGFMRHFYDQLVDNVKKGDYRTFNSDKWDPSTWPSES 474
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLA 378
+ + EAP+G G ++ K +I P + A E KG +A
Sbjct: 475 KGFGYTEAPRGSLGHWIHIK-DQKIKEYQIVVPSTWNASPRDAAGNSGAYEAALKGTPMA 533
Query: 379 D------VSAILGSLDIVFGEV 394
+ + + S D
Sbjct: 534 NPEQPLEIIRTVHSFDPCLACA 555
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 2/105 (1%)
Query: 18 PAAHGVLRLILEL-DGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQ 76
P G LR+ +L + +E G + RG E +++ + A + +R+ V
Sbjct: 11 PRIEGHLRIEAKLNESNQIEEA-FSSGTMWRGIEVILKGRDPRDAWAFAERICGVCTSVH 69
Query: 77 EHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A VE LGI++P+ ++IR L + + HL++
Sbjct: 70 ALASVRCVEDALGIDVPLNARIIRNLMNATQQTQDHLVHFYHLHA 114
>gi|29468192|gb|AAO85440.1| NiFe bidirectional hydrogenase large subunit [Geminocystis
herdmanii PCC 6308]
Length = 329
Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats.
Identities = 44/309 (14%), Positives = 94/309 (30%), Gaps = 29/309 (9%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G ++ + L+ V+ V H+ + +RG EK E + + R+ + P++
Sbjct: 3 IEGHAKISIFLNDQGNVDDVRFHV-VEYRGFEKFCEGRPMWEMAGITARICGICPVSHLL 61
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG-------------- 124
A +KLL ++ P G+ +R L + SH L+ +
Sbjct: 62 CAAKTGDKLLAVQTPPAGEKLRRLMNLGQITQSHALSFFHLSSPDFLLGWDSDPATRNVF 121
Query: 125 -----ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
G R+ E ++H+A+ PGGV + E + I
Sbjct: 122 GLIAADPDLARAGIRLRQFGQTVIELLGAKKIHSAWSVPGGVRSPLSEEGRQWIVDRLPE 181
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYE- 238
+ +L + + + + G G LR +
Sbjct: 182 AKETVYLALNLFKN--MLDRFQTEVAEFGKFPSLFMGLVGKNNEWEHYGGSLRFTGSEGN 239
Query: 239 -CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIV 297
L D G+ +++ +S+ + + + ++
Sbjct: 240 IVADNLSEDNYADFIGESVEKWSYLKFPYYKSLGYP----DGIYRVGPLARLNVCHHIGT 295
Query: 298 PPKRADMKR 306
P +++
Sbjct: 296 PEADQELEE 304
>gi|307131794|ref|YP_003883810.1| hydrogenase 2, large subunit [Dickeya dadantii 3937]
gi|306529323|gb|ADM99253.1| hydrogenase 2, large subunit [Dickeya dadantii 3937]
Length = 568
Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ V + G + RG E++++ + A R+ V A
Sbjct: 13 IEGHLRIDCEIENGKVTKA-WSSGTMWRGMEEIVKGRDPRDAWMIVQRICGVCTTVHAIA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LG+ +P+ Q IR L I H+++ +
Sbjct: 72 SVRAVENALGLNVPVNAQYIRNLILAAHSIHDHIVHFYQLSA 113
Score = 90.0 bits (222), Expect = 6e-16, Method: Composition-based stats.
Identities = 40/390 (10%), Positives = 79/390 (20%), Gaps = 96/390 (24%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYF--- 156
L H +++ A+ L E + G H
Sbjct: 162 GQLGIFANGYWGHPAMSLPPEVNLIAVAHYLQALECQRDANRIVAILGGKSPHIQNLAVG 221
Query: 157 -RPGGVHQDIP-----------PELVEDIGCWCDSFPS---------------------A 183
++ D P ++ +G + +
Sbjct: 222 GVANPINLDAPSVLNLERLMYVKSFIDRLGDFIEQVYKVDCAVIAAHYPQWLTLGRGADH 281
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS-------GVMIRGSGAAWDLRKSQP 236
+ +L T N+ + + + IR SG + Q
Sbjct: 282 YLSVPELPTDNKNGSFLLAGGYIENSDLSRYRPITSHSDKFLIDGIRESGKHAWYQDDQS 341
Query: 237 YECYSELDFDIPIGKHGD---CYDRYLVRMMEMRESVKI--------------------- 272
+ L G H D + + + E +
Sbjct: 342 LAPWEGLTRPNYTGWHEDGKYSWVKSPTFYGKTVEVGPLAWLLCGLAAKHKDTLAHFEQV 401
Query: 273 ------------IRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTE 320
+ ++ LG+ V K ++ H
Sbjct: 402 KAAYKTLSGHQLEEKHLHSTLGRVIGRTVHCCVLKDTLAQQWQALVGNIGKGDHQTFIKP 461
Query: 321 GYHVP-VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA-----HL----QAMEF 370
+ E P+G +++ K + P + E
Sbjct: 462 DFSPDTEFHGVGFGEMPRGMLSHWIVFK-NGKITNYQAVVPSTWTSCPRNGDDKPGPYEQ 520
Query: 371 LCKGHQLAD------VSAILGSLDIVFGEV 394
G +AD V + S D
Sbjct: 521 SLVGTPVADPHKPLEVVRTIHSFDPCMSCA 550
>gi|307250593|ref|ZP_07532535.1| Hydrogenase-2 large chain [Actinobacillus pleuropneumoniae serovar
4 str. M62]
gi|306857409|gb|EFM89523.1| Hydrogenase-2 large chain [Actinobacillus pleuropneumoniae serovar
4 str. M62]
Length = 569
Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 1/104 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ V G + RG E +I+ K A R+ V
Sbjct: 15 IEGHLRIDCEIEDGKVTNA-WSSGTMWRGMENIIQGKDPRDAWMIMQRICGVCTTVHAIV 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
AVE +G ++P+ Q IR + + H+++ +
Sbjct: 74 SVRAVEDAIGAKVPLNAQYIRNMILAAHTMHDHIVHFYQLSAMD 117
Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats.
Identities = 15/94 (15%), Positives = 26/94 (27%), Gaps = 18/94 (19%)
Query: 318 YTEGYHVPVGE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQ 366
Y + P GE E P+G +++ K + P + +
Sbjct: 460 YLKAEIPPTGEFKGVGFSEVPRGMLSHWIVIK-DGKIANYQAVVPSTWNSGPRNQNDEMG 518
Query: 367 AMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
E G +AD + + S D
Sbjct: 519 PYELSLIGTPVADPKKPLEIVRTIHSFDPCMSCA 552
>gi|32034182|ref|ZP_00134404.1| COG0374: Ni,Fe-hydrogenase I large subunit [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126208798|ref|YP_001054023.1| hydrogenase 2 large subunit [Actinobacillus pleuropneumoniae L20]
gi|165976759|ref|YP_001652352.1| hydrogenase 2 large subunit [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|303250580|ref|ZP_07336777.1| hydrogenase 2 large subunit [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|303253090|ref|ZP_07339240.1| hydrogenase 2 large subunit [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|307246254|ref|ZP_07528335.1| Hydrogenase-2 large chain [Actinobacillus pleuropneumoniae serovar
1 str. 4074]
gi|307248367|ref|ZP_07530390.1| Hydrogenase-2 large chain [Actinobacillus pleuropneumoniae serovar
2 str. S1536]
gi|307252974|ref|ZP_07534862.1| Hydrogenase-2 large chain [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|307255238|ref|ZP_07537053.1| Hydrogenase-2 large chain [Actinobacillus pleuropneumoniae serovar
9 str. CVJ13261]
gi|307257400|ref|ZP_07539170.1| Hydrogenase-2 large chain [Actinobacillus pleuropneumoniae serovar
10 str. D13039]
gi|307259672|ref|ZP_07541396.1| Hydrogenase-2 large chain [Actinobacillus pleuropneumoniae serovar
11 str. 56153]
gi|307261820|ref|ZP_07543485.1| Hydrogenase-2 large chain [Actinobacillus pleuropneumoniae serovar
12 str. 1096]
gi|126097590|gb|ABN74418.1| hydrogenase-2 large chain precursor [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
gi|165876860|gb|ABY69908.1| Ni, Fe-hydrogenase I large subunit [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|302648075|gb|EFL78281.1| hydrogenase 2 large subunit [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|302650568|gb|EFL80727.1| hydrogenase 2 large subunit [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306852863|gb|EFM85087.1| Hydrogenase-2 large chain [Actinobacillus pleuropneumoniae serovar
1 str. 4074]
gi|306855105|gb|EFM87285.1| Hydrogenase-2 large chain [Actinobacillus pleuropneumoniae serovar
2 str. S1536]
gi|306859612|gb|EFM91637.1| Hydrogenase-2 large chain [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|306861787|gb|EFM93766.1| Hydrogenase-2 large chain [Actinobacillus pleuropneumoniae serovar
9 str. CVJ13261]
gi|306864250|gb|EFM96163.1| Hydrogenase-2 large chain [Actinobacillus pleuropneumoniae serovar
10 str. D13039]
gi|306866317|gb|EFM98181.1| Hydrogenase-2 large chain [Actinobacillus pleuropneumoniae serovar
11 str. 56153]
gi|306868484|gb|EFN00296.1| Hydrogenase-2 large chain [Actinobacillus pleuropneumoniae serovar
12 str. 1096]
Length = 569
Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 1/104 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ V G + RG E +I+ K A R+ V
Sbjct: 15 IEGHLRIDCEIEDGKVTNA-WSSGTMWRGMENIIQGKDPRDAWMIMQRICGVCTTVHAIV 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
AVE +G ++P+ Q IR + + H+++ +
Sbjct: 74 SVRAVEDAIGAKVPLNAQYIRNMILAAHTMHDHIVHFYQLSAMD 117
Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats.
Identities = 15/94 (15%), Positives = 26/94 (27%), Gaps = 18/94 (19%)
Query: 318 YTEGYHVPVGE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQ 366
Y + P GE E P+G +++ K + P + +
Sbjct: 460 YLKAEIPPTGEFKGVGFSEVPRGMLSHWIVIK-DGKIANYQAVVPSTWNSGPRNQNDEMG 518
Query: 367 AMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
E G +AD + + S D
Sbjct: 519 PYELSLIGTPVADPKKPLEIVRTIHSFDPCMSCA 552
>gi|13022075|gb|AAK11629.1|AF331720_3 [NiFe] hydrogenase large subunit precursor [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
Length = 554
Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats.
Identities = 41/339 (12%), Positives = 73/339 (21%), Gaps = 74/339 (21%)
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVH-----QDIPPELVEDIGCWCDSFPS 182
G + +L +G HA GG+ + I C F
Sbjct: 199 HYFEGLRIQLELGRAMALFAGKNPHAQSMVVGGMTCYDSLRPEVIGHFRKIWEHCKEFVE 258
Query: 183 ALNDISDLLTGNRIF-----------------------KQRNVNIGTVKLEDAWGWGFSG 219
LL R K G + D
Sbjct: 259 NAMMPDILLMTRRYPEALAYGRTSNFFAFADFHDPVTGKDPYFTSGVLWGNDLTKHEELD 318
Query: 220 VMIRGSGAAWDLRKSQ----PYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQ 275
A + PYE +E + K + + E E+ + R+
Sbjct: 319 PGHINEHVARSWYEGDTPRTPYEGATEPHYTSYEDKEKYSWSKAPRYKNEAMETGPLARR 378
Query: 276 CVNRLLGKNKVGPVSASDPK---------------------IVPPKRADMKRSMESLIHH 314
+ + + + + K M+ ++
Sbjct: 379 ALAYARKEQETRTMLDTFFKDSGMKPDQLFSTMGRTVCRVVETTMLMRRMQGWIDDTEAR 438
Query: 315 FK-----LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH----- 364
K +YTE +G ++ K + ++ P +
Sbjct: 439 IKAGEDTIYTEWKMPDSARGVGFCCVTRGALSHWIDIKEA-KIHNFQMVVPSTWNLGPRC 497
Query: 365 ----LQAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
L A E G D + + S D
Sbjct: 498 ANGKLSAGEQSLIGCPCPDPDRPVEILRTIHSFDPCIAC 536
Score = 96.9 bits (240), Expect = 5e-18, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 1/101 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L++ +EL+ V+ L RG E +++ + A + R V
Sbjct: 21 IEGHLKIEVELENNRVKDA-WVSTQLFRGIEMILKGRPPEDAPLFTQRAYGVCTNTHALT 79
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A+E L I++P QL+R L + HL++
Sbjct: 80 SIRAIEDALEIKVPPLAQLMRHLILSALIVHDHLVHFYHLH 120
>gi|190150654|ref|YP_001969179.1| hydrogenase-2 large chain precursor [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|307264002|ref|ZP_07545603.1| Hydrogenase-2 large chain [Actinobacillus pleuropneumoniae serovar
13 str. N273]
gi|189915785|gb|ACE62037.1| hydrogenase-2 large chain precursor [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|306870691|gb|EFN02434.1| Hydrogenase-2 large chain [Actinobacillus pleuropneumoniae serovar
13 str. N273]
Length = 569
Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 1/104 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ V G + RG E +I+ K A R+ V
Sbjct: 15 IEGHLRIDCEIEDGKVTNA-WSSGTMWRGMENIIQGKDPRDAWMIMQRICGVCTTVHAIV 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
AVE +G ++P+ Q IR + + H+++ +
Sbjct: 74 SVRAVEDAIGAKVPLNAQYIRNMILAAHTMHDHIVHFYQLSAMD 117
Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats.
Identities = 15/94 (15%), Positives = 26/94 (27%), Gaps = 18/94 (19%)
Query: 318 YTEGYHVPVGE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQ 366
Y + P GE E P+G +++ K + P + +
Sbjct: 460 YLKAEIPPTGEFKGVGFSEVPRGMLSHWIVIK-DGKIANYQAVVPSTWNSGPRNQNDEMG 518
Query: 367 AMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
E G +AD + + S D
Sbjct: 519 PYELSLIGTPVADPKKPLEIVRTIHSFDPCMSCA 552
>gi|302148813|pdb|3MYR|B Chain B, Crystal Structure Of [nife] Hydrogenase From
Allochromatium Vinosum In Its Ni-A State
gi|302148815|pdb|3MYR|D Chain D, Crystal Structure Of [nife] Hydrogenase From
Allochromatium Vinosum In Its Ni-A State
gi|302148817|pdb|3MYR|F Chain F, Crystal Structure Of [nife] Hydrogenase From
Allochromatium Vinosum In Its Ni-A State
gi|302148819|pdb|3MYR|H Chain H, Crystal Structure Of [nife] Hydrogenase From
Allochromatium Vinosum In Its Ni-A State
Length = 561
Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ ++DG + + G + RG E +++ + A + R+ V + A
Sbjct: 13 IEGHLRIEAQMDGATIAQA-YSSGTMVRGIETILKGRDPRDAWAFVQRICGVCTLVHGIA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE L IE+P+ QLIR L I H+++
Sbjct: 72 SVRAVEDALRIELPLNAQLIRNLMIGAQYIHDHVMHFYHLHA 113
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 45/399 (11%), Positives = 89/399 (22%), Gaps = 105/399 (26%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H ++ A+ L + F+ G H + G
Sbjct: 162 GQLGIFANGYWGHPAYRLPPEANLMAVAHYLEALAWQRDTAKFHAIFGGKNPHPNFVVGG 221
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALNDISDLLTG------------NRIFKQRNVNIGTV 207
+ + + + + + +R +G
Sbjct: 222 VPSPIDLDSDSALNAKRLAEVRNLIQSMRTFVDQVYVPDTLAIAGFYKDWGERGEGLGNF 281
Query: 208 KLEDAWGWGF-----------------------------SGVMIRGSGAAWD------LR 232
G +G + +W R
Sbjct: 282 LCYGDLPTGASLDPATFLFPRGAILDRDLSTIHEVDLEATGEIQEFVNHSWYEYSVGNDR 341
Query: 233 KSQPYECYSELDFDIPIG----------KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLG 282
PYE + L++D G G + + E + R + G
Sbjct: 342 GLHPYEGQTNLEYDRRGGVAPPYKQLDVSDGYSWLKAPRWKGRSVEVGPLARVLMLYATG 401
Query: 283 KN---------------KVGPVSASDPKIVPPKRA------DMKRSMESLIHHFK----- 316
+ V + ++ + M+ + LI + K
Sbjct: 402 HDQARELVDSTLSRLDLPVDALYSTLGRTAARALESKILVDAMQGWYDGLIANVKSGDTK 461
Query: 317 -----LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH------- 364
L+ + +EAP+G G +++ + + P +
Sbjct: 462 TFNETLWEPSSWPSRAQGVGIMEAPRGALGHWIVI-EDGRIANYQAVVPSTWNAGPRDGR 520
Query: 365 --LQAMEFLCK-GHQLADV------SAILGSLDIVFGEV 394
A E + HQL DV + S D
Sbjct: 521 GQAGAYEAALQDNHQLVDVKQPIEILRTIHSFDPCIACA 559
>gi|145298776|ref|YP_001141617.1| hydrogenase 2 large subunit [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142851548|gb|ABO89869.1| hydrogenase-2 large subunit [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 567
Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++G IV + G + RG E++++ A R+ V A
Sbjct: 13 IEGHLRIDCEIEGGIVTKA-WSSGTMWRGMEEIVKGNDPRDAWMIVQRICGVCTSIHAIA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE +G ++P+ Q IR L I H+++ +
Sbjct: 72 SVRAVENAIGAKVPVNAQYIRNLIIAAHNIHDHIVHFYHLSA 113
Score = 99.2 bits (246), Expect = 1e-18, Method: Composition-based stats.
Identities = 43/412 (10%), Positives = 94/412 (22%), Gaps = 99/412 (24%)
Query: 80 YALAVEKLLGIEIPIRG-QLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREK 138
+ ++L ++ IR L H + +++ A+ L E +
Sbjct: 141 SLNSADELTKVQDKIRALVASGQLGIFANGYWGHKAMKLSPEVNLIAVAHYLQALECQRD 200
Query: 139 LMVFYERASGSRMHAAYF----RPGGVHQDIP-----------PELVEDIGCWCDSFPSA 183
G H ++ D P ++ +G + +
Sbjct: 201 ANRIVAILGGKTPHIQNLAVGGVANPINLDAPSVLNLERLLYVKSFIDRLGEFIEQVYKV 260
Query: 184 LNDISDL-----------------------------LTGNRIFKQRNVNIGTVKLEDAWG 214
I + + +G +E
Sbjct: 261 DAAIIAAHYPEWLALGQGAKHYLSVPELPTDANGGSFLMPGGYIENGDLVGYRPIESHQD 320
Query: 215 WGFSGVMIRGSGAAW--DLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKI 272
+ + AW D +P+E +E ++ + + ++ E +
Sbjct: 321 AWLMDGIAESNKHAWYKDDEPLKPWEGKTEPNYTGWQDDGKYSWVKSPTFYGKVVEVGPL 380
Query: 273 IRQCVNRLLGKNKVGPVSASDPKIVPPK----------------------------RADM 304
+ +L K+ + + +
Sbjct: 381 A-DLLVKLAAKHPETVAHFDQLNGIYKALTGSAIKTEQLHSTMGRIIGRAVRCCVLKDTL 439
Query: 305 KRSMESLIH-----HFKLYTEGYHVPVGE--VYAAVEAPKGEFGVYLISDGGNKPYRCKI 357
++LI F Y + E EAP+G +++ K +
Sbjct: 440 AHQWKALIDNIGKGDFTAYIKAEIPADKEFRGVGFEEAPRGMLSHWIVIKE-GKIANYQA 498
Query: 358 RAPGYAHL---------QAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
P + E G +AD V + S D
Sbjct: 499 VVPSTWNSGPRNFNDEPGPYEQALVGTPVADPAKPLEVVRTIHSFDPCMSCA 550
>gi|128836|sp|P27758|NDHH_SECCE RecName: Full=NAD(P)H-quinone oxidoreductase subunit H,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit H; AltName: Full=NADH-plastoquinone
oxidoreductase 49 kDa subunit; AltName:
Full=NADH-plastoquinone oxidoreductase subunit H
gi|12240|emb|CAA32694.1| unnamed protein product [Secale cereale]
Length = 90
Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats.
Identities = 42/90 (46%), Positives = 54/90 (60%)
Query: 27 ILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEK 86
I+ LDGE V +P +G LHRG EK+ E +T +Q +PY R DY+A M E A E
Sbjct: 1 IVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNAPEF 60
Query: 87 LLGIEIPIRGQLIRVLYSEIGRILSHLLNV 116
L I+IP R IRV+ E+ RI SHLL +
Sbjct: 61 LENIQIPQRASYIRVIMLELSRIASHLLWL 90
>gi|213025732|ref|ZP_03340179.1| formate hydrogenlyase subunit 5 [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
Length = 134
Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats.
Identities = 32/130 (24%), Positives = 56/130 (43%)
Query: 58 FLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVT 117
+ + DR+ + AY +VE +GI++P R Q+IR + E+ R+ SHLLN+
Sbjct: 5 YNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLG 64
Query: 118 TQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWC 177
G + + F RE M E +G+R GG+ +D+ E +
Sbjct: 65 LACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKEDMIQTRQLA 124
Query: 178 DSFPSALNDI 187
+ ++
Sbjct: 125 QQMRRDVQEL 134
>gi|332162875|ref|YP_004299452.1| hydrogenase 2 large subunit [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|325667105|gb|ADZ43749.1| hydrogenase 2 large subunit [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330863322|emb|CBX73445.1| hydrogenase-2 large chain [Yersinia enterocolitica W22703]
Length = 564
Score = 110 bits (276), Expect = 4e-22, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ V + G + RG E++++ A R+ V A
Sbjct: 13 IEGHLRIDCEIEDGKVIKA-WSSGTMWRGMEEILQGNDPRDAWMIVQRICGVCTTIHAIA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LG+E+P+ Q IR L I H+++ +
Sbjct: 72 SVRAVENALGMEVPVNAQHIRNLILAAHSIHDHIVHFYQLSA 113
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 37/387 (9%), Positives = 77/387 (19%), Gaps = 93/387 (24%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYF--- 156
L H +++ A+ L E + G H
Sbjct: 162 GQLGIFANGYWGHPAMALPPEVNLIAVAHYLQALECQRDANRIVAVLGGKTPHIQNLAVG 221
Query: 157 -RPGGVHQDIP-----------PELVEDIGCWCDSFPSALNDIS--------------DL 190
++ D+P ++ +G + + + D
Sbjct: 222 GVANPINLDMPSVLNLERLMLVKSFIDRLGSFIEQVYKVDTAVIAAHYPNWLNLGKGADY 281
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIR-----------GSGAAWDLRKSQPYEC 239
+ G + SG + +P
Sbjct: 282 YLSVPELPIDRKGENFLLPGGYLENGTFRPIANHNDPYLIKGIAESGKHAWYQDDEPLAP 341
Query: 240 YSELDFDIPIGKHGD---CYDRYLVRMMEMRESVKIIR---------------------- 274
+ G D + + + E +
Sbjct: 342 WEGKTNPNYTGWQEDGKYSWVKAPTFYGKTVEVGPLAWLMCGLAAGHAPTKQHFTDIGAA 401
Query: 275 ------QCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP--- 325
Q + + +G + ++ + + E + P
Sbjct: 402 YQKLSGQAITAEQLPSTLGRIIGRAVHCCVLHETLAQQWTALVTNIGTGDIETFIKPNIP 461
Query: 326 -VGE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCK 373
GE EAP+G +++ K + P + E
Sbjct: 462 LSGEIRGVGFEEAPRGMLSHWVVIK-DGKIANYQAVVPSTWNAGPRNYNDEPGPYEQALV 520
Query: 374 GHQLAD------VSAILGSLDIVFGEV 394
G +AD V + S D
Sbjct: 521 GTPVADPAKPLEVVRTIHSFDPCMSCA 547
>gi|123443796|ref|YP_001007767.1| hydrogenase 2 large subunit [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122090757|emb|CAL13634.1| hydrogenase-2 large chain precursor [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 564
Score = 110 bits (276), Expect = 4e-22, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ V + G + RG E++++ A R+ V A
Sbjct: 13 IEGHLRIDCEIEDGKVIKA-WSSGTMWRGMEEILQGNDPRDAWMIVQRICGVCTTIHAIA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LG+E+P+ Q IR L I H+++ +
Sbjct: 72 SVRAVENALGMEVPVNAQHIRNLILAAHSIHDHIVHFYQLSA 113
Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats.
Identities = 37/387 (9%), Positives = 77/387 (19%), Gaps = 93/387 (24%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYF--- 156
L H +++ A+ L E + G H
Sbjct: 162 GQLGIFANGYWGHPAMALPPEVNLIAVAHYLQALECQRDANRIVAVLGGKTPHIQNLAVG 221
Query: 157 -RPGGVHQDIP-----------PELVEDIGCWCDSFPSALNDIS--------------DL 190
++ D+P ++ +G + + + D
Sbjct: 222 GVANPINLDMPSVLNLERLMLVKSFIDRLGSFIEQVYKVDTAVIAAHYPNWLNLGKGADY 281
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIR-----------GSGAAWDLRKSQPYEC 239
+ G + SG + +P
Sbjct: 282 YLSVPELPTDRKGETFLLPGGYLEKGAFRPIANHNDPYLIEGIAESGKHAWYQDDEPLAP 341
Query: 240 YSELDFDIPIGKHGD---CYDRYLVRMMEMRESVKIIR---------------------- 274
+ G D + + + E +
Sbjct: 342 WEGKTNPNYTGWQEDGKYSWVKAPTFYGKTVEVGPLAWLMCGLAAGHVPTKQHFTDIGAA 401
Query: 275 ------QCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV-- 326
Q + + +G + ++ + + E + P
Sbjct: 402 YQKLSGQAITAEQLPSTLGRIIGRAVHCCVLHETLAQQWTALVTNIGTGDIETFIKPDIP 461
Query: 327 --GE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCK 373
GE EAP+G +++ K + P + E
Sbjct: 462 LSGEIRGVGFEEAPRGMLSHWVVIK-DGKIANYQAVVPSTWNAGPRNYNDEPGPYEQALV 520
Query: 374 GHQLAD------VSAILGSLDIVFGEV 394
G +AD V + S D
Sbjct: 521 GTPVADPAKPLEVVRTIHSFDPCMSCA 547
>gi|318604281|emb|CBY25779.1| uptake hydrogenase large subunit [Yersinia enterocolitica subsp.
palearctica Y11]
Length = 564
Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ V + G + RG E++++ A R+ V A
Sbjct: 13 IEGHLRIDCEIEDGKVIKA-WSSGTMWRGMEEILQGNDPRDAWMIVQRICGVCTTIHAIA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LG+E+P+ Q IR L I H+++ +
Sbjct: 72 SVRAVENALGMEVPVNAQHIRNLILAAHSIHDHIVHFYQLSA 113
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 38/387 (9%), Positives = 77/387 (19%), Gaps = 93/387 (24%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYF--- 156
L H +++ A+ L E + G H
Sbjct: 162 GQLGIFANGYWGHPAMALPPEVNLIAVAHYLQALECQRDANRIVAVLGGKTPHIQNLAVG 221
Query: 157 -RPGGVHQDIP-----------PELVEDIGCWCDSFPSALNDIS--------------DL 190
++ D+P ++ +G + + + D
Sbjct: 222 GVANPINLDMPSVLNLERLMLVKSFIDRLGSFIEQVYKVDTAVIAAHYPNWLNLGKGADY 281
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIR-----------GSGAAWDLRKSQPYEC 239
+ G + SG R +P
Sbjct: 282 YLSVPELPIDRKGENFLLPGGYLENGTFRPIANHNDPYLIKGIAESGKHAWYRDDEPLAP 341
Query: 240 YSELDFDIPIGKHGD---CYDRYLVRMMEMRESVKIIR---------------------- 274
+ G D + + + E +
Sbjct: 342 WEGKTNPNYTGWQEDGKYSWVKAPTFYGKTVEVGPLAWLMCGLAAGHAPTKQHFTDIGAA 401
Query: 275 ------QCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP--- 325
Q + + +G + ++ + + E + P
Sbjct: 402 YQKLSGQAITAEQLPSTLGRIIGRAVHCCVLHETLAQQWTALVTNIGTGDIETFIKPNIP 461
Query: 326 -VGE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCK 373
GE EAP+G +++ K + P + E
Sbjct: 462 LSGEIRGVGFEEAPRGMLSHWVVIK-DGKIANYQAVVPSTWNAGPRNYNDEPGPYEQALV 520
Query: 374 GHQLAD------VSAILGSLDIVFGEV 394
G +AD V + S D
Sbjct: 521 GTPVADPAKPLEVVRTIHSFDPCMSCA 547
>gi|303327298|ref|ZP_07357740.1| nickel-iron hydrogenase, large subunit [Desulfovibrio sp. 3_1_syn3]
gi|302863286|gb|EFL86218.1| nickel-iron hydrogenase, large subunit [Desulfovibrio sp. 3_1_syn3]
Length = 602
Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 42/100 (42%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR + LD + V G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHLRCEVNLDEQNVITNAVSCGTIFRGIEIILKGRDPRDAWAFVERICGVCTGTHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
AVE LGI++P +IR + HL+++
Sbjct: 87 SVHAVENALGIDVPDNANIIRNMMQLCLMYHDHLVHMYHL 126
Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats.
Identities = 35/235 (14%), Positives = 62/235 (26%), Gaps = 36/235 (15%)
Query: 194 NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHG 253
N + + + D G DL++ YS L + G
Sbjct: 350 NHSWYDYPLGKVGLHPFDGVTDPNYQPGPNIKGTPTDLKQVDEQARYSWLKTPLWRGNQM 409
Query: 254 DCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIH 313
+ + ++ I + V S + + ++ S E L +
Sbjct: 410 EVGPLARTLVGYAKKDDAIKGMVDDFCGRLGAPVSVLQSTLGRIAARSLELAWSAEKLRY 469
Query: 314 -----------------HFKLYTEGYHVPVGE--VYAAVEAPKGEFGVYLISDGGNKPYR 354
+ K ++ P GE EAP+G G +++ K R
Sbjct: 470 FYDRLVTNLKNGNTSTANTKNWSPDTW-PEGEVRGVGFTEAPRGALGHWIVIK-NRKIER 527
Query: 355 CKIRAPGYAH---------LQAMEFLCKGHQ--LAD----VSAILGSLDIVFGEV 394
+ P + L A E G + D + L S D
Sbjct: 528 YQCIVPTTWNAAPRGPKGQLGAYEAALMGTHMDIPDQPLEILRTLHSFDPCLACA 582
>gi|291532635|emb|CBL05748.1| Ni,Fe-hydrogenase I large subunit [Megamonas hypermegale ART12/1]
Length = 633
Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E++G V G RG E + + + Y R+ V +
Sbjct: 12 IEGHLRVEIEVEGNKVTDA-ISSGTAWRGLEVIAKNRDPRDLWAYIQRICGVCTSSHSLG 70
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI+IP IR + + + HL++
Sbjct: 71 CVRAVEDALGIKIPKNANYIRNIMAATLTVHDHLVHFYHLHA 112
Score = 76.1 bits (186), Expect = 9e-12, Method: Composition-based stats.
Identities = 10/82 (12%), Positives = 20/82 (24%), Gaps = 16/82 (19%)
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLA 378
+ EAP+G ++ K + P + A E +
Sbjct: 527 KGVGLYEAPRGALSHWVAIK-DKKCSNYQAVVPTTWNACPRDEVAGQGAFERAMMDTAVK 585
Query: 379 ------DVSAILGSLDIVFGEV 394
++ + S D
Sbjct: 586 IPEKPLEIVKAIRSFDPCIACA 607
>gi|330829844|ref|YP_004392796.1| hydrogenase 2 large subunit [Aeromonas veronii B565]
gi|328804980|gb|AEB50179.1| Hydrogenase 2 large subunit [Aeromonas veronii B565]
Length = 567
Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++G V + G + RG E++++ A R+ V A
Sbjct: 13 IEGHLRIDCEIEGGKVTKA-WSSGTMWRGMEEIVKGNDPRDAWMIVQRICGVCTSIHAIA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE +G ++P+ Q IR L I H+++ +
Sbjct: 72 SVRAVENAIGAKVPVNAQFIRNLIIAAHNIHDHIVHFYQLSA 113
Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats.
Identities = 47/412 (11%), Positives = 98/412 (23%), Gaps = 99/412 (24%)
Query: 80 YALAVEKLLGIEIPIRG-QLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREK 138
+ ++L ++ IR L H + +++ A+ L E +
Sbjct: 141 SLNSADELTKVQDKIRALVASGQLGIFANGYWGHKEMKLSPEVNLIAVAHYLQALECQRD 200
Query: 139 LMVFYERASGSRMHAAYF----RPGGVHQDIP-----------PELVEDIGCWCDSFPS- 182
G H ++ D P ++ +G + +
Sbjct: 201 ANRIVAILGGKSPHIQNLAVGGVANPINLDAPSVLNLERLLYVKSFIDRLGEFIEQVYKV 260
Query: 183 ----ALNDISDLLTGN-----------------------RIFKQRNVNIGTVKLEDAWGW 215
+ L+ N N+ + ++
Sbjct: 261 DAAIIAAHYPEWLSLGQGAKHYLSVPELPTDANGGSFLMPGGYIENGNLAGYRPIESHQD 320
Query: 216 GFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGD---CYDRYLVRMMEMRESVKI 272
G+ I S + +P + + G D + + ++ E +
Sbjct: 321 GWLMDGIAESNKHAWYKDDEPLKPWEGKTEPNYTGWQDDGKYSWVKSPTFYGKVVEVGPL 380
Query: 273 IRQCVNRLLGKNKVGPVSASD-----------PKIVPPKRADMKRSM----------ESL 311
+ +L K+ V + M R + ++L
Sbjct: 381 A-DLLVKLAAKHPETVVHFDQLNGLYKALTGSAIKTEQLHSTMGRIIGRAVRCCVLKDTL 439
Query: 312 IHHFKL------------YTEGYHVPVGE--VYAAVEAPKGEFGVYLISDGGNKPYRCKI 357
H +K Y + E EAP+G +++ G K +
Sbjct: 440 AHQWKALVDNIGKGDTTAYIKAEIPADKEFRGVGFEEAPRGMLSHWIVIKG-GKIENYQA 498
Query: 358 RAPGYAHL---------QAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
P + E G +AD V + S D
Sbjct: 499 VVPSTWNSGPRNFNDEPGPYEQALVGTPVADPAKPLEVVRTIHSFDPCMSCA 550
>gi|212635437|ref|YP_002311962.1| Nickel-dependent hydrogenase large subunit [Shewanella
piezotolerans WP3]
gi|212556921|gb|ACJ29375.1| Nickel-dependent hydrogenase, large subunit [Shewanella
piezotolerans WP3]
Length = 567
Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats.
Identities = 43/359 (11%), Positives = 76/359 (21%), Gaps = 90/359 (25%)
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
AL+ L E + G H GGV + W
Sbjct: 189 ALSHYLKALEVQRIAAEMLAIFGGKSPHPQSIVVGGVTSVRDMLSPARLQEWKQKHAIVN 248
Query: 185 NDISDLLTGNRIFKQRNVNI------------------------------GTVKLEDAWG 214
+ I + + G + D G
Sbjct: 249 DFIIRAYKADVVMAAEAFGSEPSVLGGVNVKNFLATDDFILGDGQFMFNQGVIMNGDLAG 308
Query: 215 WGFSGVMIRGSGAAWDLRK----SQPYECYSELDFDIPI-------------GKHGDCYD 257
+ K PY+ + D+ + G +
Sbjct: 309 VSDLNPELIKEDVTHAWYKADGAQHPYDGTTVPDYTGFVERDTVYGKLPTVDGDGKYSWV 368
Query: 258 RYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM--------- 308
+ E E + V+ G V + ++
Sbjct: 369 KSPRYQGEPVEVGPLACLLVSYARGNQVVVDAVNGLLAATGLPIEALFTTLGRTAARMLQ 428
Query: 309 ------------ESLIHHFKLYTEGYHVPV----GEVYA--AVEAPKGEFGVYLISDGGN 350
++L+ + + Y P E +EAP+G ++ G
Sbjct: 429 TVIVAEEGLKTFDALLTNLQSDESTYTKPEIDSNKEYVGHAMIEAPRGMLSHWIRIKG-G 487
Query: 351 KPYRCKIRAPGYA---------HLQAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
K + P ++ E G +L D V I+ S D
Sbjct: 488 KVENYQAVVPTTWNAGPVDGQGNMGPYEASLIGLKLEDPTKPLEVIRIIHSFDPCMACA 546
Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 43/101 (42%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E+D V + L RG E +++ +T + R+ V +
Sbjct: 13 IEGHLRVEVEVDENNVIQKAWSSSTLWRGIEVILKGRTPMDVGLIVQRICGVCTYSHYRC 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LG++IP+ + +R L + H+++
Sbjct: 73 GTEAVENALGVKIPLNAKYLRSLMQTSLNMHDHIVHFYHLH 113
>gi|291614080|ref|YP_003524237.1| nickel-dependent hydrogenase large subunit [Sideroxydans
lithotrophicus ES-1]
gi|291584192|gb|ADE11850.1| nickel-dependent hydrogenase large subunit [Sideroxydans
lithotrophicus ES-1]
Length = 589
Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats.
Identities = 35/196 (17%), Positives = 58/196 (29%), Gaps = 32/196 (16%)
Query: 20 AHGVLRLILELD-GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G LR+ E+D + R G + RG E ++ + +A + R+ V +
Sbjct: 13 IEGHLRIEAEMDADNRISRAS-SAGTMVRGIEIILRGRDPREAWAFAQRICGVCTLVHGI 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV--------------- 123
A AVE L IE+P QLIR + I H+++
Sbjct: 72 ASVRAVENALKIEVPSNAQLIRNMMIGAQYIHDHVMHFYHLHALDWVDVVSALKADPKAT 131
Query: 124 ---------------GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE 168
G + + A+G H AY P +
Sbjct: 132 SALAQSLSGYAKSSPGYFSDVQKKLKGFVDAGQLGIFANGYWGHPAYKLPPEANLMAVAH 191
Query: 169 LVEDIGCWCDSFPSAL 184
++ + D
Sbjct: 192 YLDALAWQRDVVKLHA 207
Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats.
Identities = 37/267 (13%), Positives = 68/267 (25%), Gaps = 34/267 (12%)
Query: 154 AYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAW 213
+Y P GV D + I + +I + ++ G +
Sbjct: 314 SYLIPSGVILDRDLSKIHPIDMDAEG------EIQEFVSHAWYDYSVGKEKGLHPYKGET 367
Query: 214 GWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKII 273
++G D S + +G Y + RE V +
Sbjct: 368 KLDYTGPKPPYDHLDVDKEYSWLKSP-RWKGKAVEVGPLARVLMLYASGHEQTRELVGMT 426
Query: 274 RQCVN----RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLI-------HHFKLYTEGY 322
+ ++ L + KIV + + I + +
Sbjct: 427 LKKLDVPVQALYSTLGRTAARTLETKIVADAMQGWYDQLVANIKAGDVKTFNETKWDPST 486
Query: 323 HVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCK 373
+ +EAP+G +++ K + P + E K
Sbjct: 487 WPSHAQGVGVMEAPRGALSHWIVIK-DQKIDNYQAIVPSTWNAGPRDAQGNQGPYEAALK 545
Query: 374 GHQLADV------SAILGSLDIVFGEV 394
GHQL DV + S D
Sbjct: 546 GHQLHDVKQPIEILRTIHSFDPCIACA 572
>gi|254167298|ref|ZP_04874150.1| Respiratory-chain NADH dehydrogenase, 49 Kd subunit domain protein
[Aciduliprofundum boonei T469]
gi|197623561|gb|EDY36124.1| Respiratory-chain NADH dehydrogenase, 49 Kd subunit domain protein
[Aciduliprofundum boonei T469]
Length = 412
Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats.
Identities = 67/370 (18%), Positives = 121/370 (32%), Gaps = 52/370 (14%)
Query: 26 LILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVE 85
+ GE ++ + P++G R K +A+PY +R+ ++ + V
Sbjct: 89 FKIATCGEKIDSLVPYLGFKKREMLNKAIGKEPWEALPYIERITGQFSISYASLFYALV- 147
Query: 86 KLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYER 145
G + P + E+ R+ +H+ + A D + E+ + +
Sbjct: 148 --FGFDCPD----YLLFAKELERVHNHIWVMHKLAGDASQKVANMHLAAITEEFLRLNLK 201
Query: 146 ASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIG 205
G R + R G P E + ++ L+ +RIF R
Sbjct: 202 TLGHRYGMNFLRAG-------PRKYEKFHQELSELKKWFLETAEELSDSRIFIDRLQTTC 254
Query: 206 TVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMME 265
+K D G+ R SG D RK ++ D+ P+ +GD R+L+RM E
Sbjct: 255 ALKKLDILRNDVVGIPARASGVLRDARKIGIFKDL-YGDYSPPMESYGDSLSRFLIRMGE 313
Query: 266 MRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP 325
+ +S +I+ + + K+ + D
Sbjct: 314 VEKSFEILE-------------NIKLKECKVKRNAKND---------------------- 338
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILG 385
G EAP G+ + + + IR P A +G+ D L
Sbjct: 339 -GFYEGMAEAPPGDIYMGVKI-EKGRVKEIIIRPPSLVMYHAFSVGIRGNVFTDFPFALD 396
Query: 386 SLDIVFGEVD 395
S F + D
Sbjct: 397 SFGAYFSDAD 406
>gi|144898859|emb|CAM75723.1| Ni,Fe-hydrogenase I large subunit [Magnetospirillum gryphiswaldense
MSR-1]
Length = 568
Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 1/105 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E+D V + G + RG E ++ + A R+ V
Sbjct: 13 IEGHLRIDVEVDNGKVTKA-WSSGQMWRGVELILLGRDPRDAWAITQRICGVCTTVHAIT 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
AVE LG+E+P+ Q IR + + + H+++ +
Sbjct: 72 SVRAVENALGLEVPVNAQFIRNMIASAHALHDHIVHFYHLSALDF 116
Score = 96.9 bits (240), Expect = 5e-18, Method: Composition-based stats.
Identities = 25/228 (10%), Positives = 50/228 (21%), Gaps = 52/228 (22%)
Query: 218 SGVMIRGSGAAWDLRKS---QPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIR 274
GV A + K PY+ + + + + + + +
Sbjct: 325 DGVEESVKHAWYTYSKPGALHPYKGETTPHYTDFQDDGKYSWLKAPTFYGKRAQVGPLAN 384
Query: 275 QCVNRLLGKNKVGPV--------------------------SASDPKIVPPKRADMKRS- 307
G + I A++
Sbjct: 385 VLCGLAAGHQPTATYATQMLNTVSTLLGSKVGPEILHSTIGRHAARAIRSGVMAEVLAQN 444
Query: 308 ----MESLIHHFKLYTEGYHVPVGE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+E++ P GE + EAP+G + + K + P
Sbjct: 445 WSMLIENIGKGDHTTFNKPVFPKGEVMGFGMHEAPRGLLSHWTVIK-DGKIANYQCVVPS 503
Query: 362 YAH---------LQAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
+ + E + +AD V + S D
Sbjct: 504 TWNAGPRDENDAIGPYEASLMDNPIADPEQPLEVLRTVHSFDPCLACA 551
>gi|227358179|ref|ZP_03842520.1| hydrogenase-2 large subunit [Proteus mirabilis ATCC 29906]
gi|227161515|gb|EEI46552.1| hydrogenase-2 large subunit [Proteus mirabilis ATCC 29906]
Length = 567
Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 1/104 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E+D V + G + RG E++++ A R+ V A
Sbjct: 13 IEGHLRVDCEIDNGKVVKA-WSSGTMWRGMEEILKGSDPRDAWIIVQRICGVCTTVHAIA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
AVE LG++IP+ Q IR L I H+++ +
Sbjct: 72 SVRAVEDALGMDIPVNAQYIRNLILASHIIHDHIVHFYQLSAMD 115
Score = 90.8 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 12/82 (14%), Positives = 20/82 (24%), Gaps = 16/82 (19%)
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLA 378
EA +G +++ K + P + E G +A
Sbjct: 470 RGVGFEEASRGMLSHWIVFK-DGKITNYQAVVPSTWNAGPRNFNDEPGPYELSLVGTPVA 528
Query: 379 D------VSAILGSLDIVFGEV 394
D V + S D
Sbjct: 529 DPNKPLEVVRTIHSFDPCMACA 550
>gi|242239949|ref|YP_002988130.1| hydrogenase 2 large subunit [Dickeya dadantii Ech703]
gi|242132006|gb|ACS86308.1| nickel-dependent hydrogenase large subunit [Dickeya dadantii
Ech703]
Length = 568
Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ V + G + RG E++++ + A R+ V A
Sbjct: 13 IEGHLRIDCEIENGKVTKA-WSSGTMWRGMEEIVKGRDPRDAWMIVQRICGVCTTVHAIA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LG+ IP+ Q IR L I H+++ +
Sbjct: 72 SVRAVENALGLNIPVNAQYIRNLILAAHSIHDHIVHFYQLSA 113
Score = 90.4 bits (223), Expect = 5e-16, Method: Composition-based stats.
Identities = 44/390 (11%), Positives = 82/390 (21%), Gaps = 96/390 (24%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYF--- 156
L H +++ A+ L E + G H
Sbjct: 162 GQLGIFANGYWGHPAMSLPPEVNLIAVAHYLQALECQRDANRIVAILGGKTPHIQNLAVG 221
Query: 157 -RPGGVHQDIP-----------PELVEDIGCWCDSFPS---------------------A 183
++ D P ++ +G + +
Sbjct: 222 GVANPINLDAPSVLNLERLMYVKSFIDRLGDFIEQVYKVDCAVIAAHYPQWLTLGRGADH 281
Query: 184 LNDISDLLTGN-------RIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQP 236
+ +L T N N ++ + + F IR +G + QP
Sbjct: 282 YLSVPELPTDNKGGSFLLPGGYLENGDLAKFRPITSHSDKFLIEGIRETGKHAWYQDEQP 341
Query: 237 YECYSELDFDIPIGKHGD---CYDRYLVRMMEMRESVKII-------------------- 273
+ L G H D + + + E +
Sbjct: 342 LAPWEGLTRPKYTGWHEDGKYSWVKSPTFYGKTVEVGPLAWLLCGMAAKHQGTLAHFNQV 401
Query: 274 ---------RQCVNRLL----GKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTE 320
RQ + L G+ V K ++ + H
Sbjct: 402 KAAYQALSGRQLEEKHLHSTLGRIIGRTVHCCVLKDTLAQQWQALVTNIGNGDHQTFIKP 461
Query: 321 GYHVP-VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA-----HL----QAMEF 370
E P+G +++ K + P + E
Sbjct: 462 DLSPNTEFRGVGFGEMPRGMLSHWIVFK-DGKITNYQAVVPSTWTSCPRNGDDKPGPYEQ 520
Query: 371 LCKGHQLAD------VSAILGSLDIVFGEV 394
G +AD V + S D
Sbjct: 521 SLVGTPVADPHKPLEVVRTIHSFDPCMSCA 550
>gi|197283949|ref|YP_002149821.1| hydrogenase 2 large subunit [Proteus mirabilis HI4320]
gi|194681436|emb|CAR40274.1| hydrogenase-2 large subunit [Proteus mirabilis HI4320]
Length = 567
Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 1/104 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E+D V + G + RG E++++ A R+ V A
Sbjct: 13 IEGHLRVDCEIDNGKVVKA-WSSGTMWRGMEEILKGSDPRDAWIIVQRICGVCTTVHAIA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
AVE LG++IP+ Q IR L I H+++ +
Sbjct: 72 SVRAVEDALGMDIPVNAQYIRNLILASHIIHDHIVHFYQLSAMD 115
Score = 90.8 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 12/82 (14%), Positives = 20/82 (24%), Gaps = 16/82 (19%)
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLA 378
EA +G +++ K + P + E G +A
Sbjct: 470 RGVGFEEASRGMLSHWIVFK-DGKITNYQAVVPSTWNAGPRNFNDEPGPYELSLVGTPVA 528
Query: 379 D------VSAILGSLDIVFGEV 394
D V + S D
Sbjct: 529 DPNKPLEVVRTIHSFDPCMACA 550
>gi|153006360|ref|YP_001380685.1| nickel-dependent hydrogenase large subunit [Anaeromyxobacter sp.
Fw109-5]
gi|152029933|gb|ABS27701.1| nickel-dependent hydrogenase large subunit [Anaeromyxobacter sp.
Fw109-5]
Length = 567
Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E+DG V + G + RG E +++ + A + R+ V A
Sbjct: 14 IEGHLRIDIEVDGGAVRKA-WSSGTMWRGMELILKGRDPRDAWVFTQRICGVCTTVHAIA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE + + IP+ QLIR L + H+++ +
Sbjct: 73 SVRAVENAIALPIPLNAQLIRNLLVAAHALHDHVVHFYQLSA 114
Score = 102 bits (255), Expect = 9e-20, Method: Composition-based stats.
Identities = 18/128 (14%), Positives = 34/128 (26%), Gaps = 21/128 (16%)
Query: 287 GPVSASDPKIVPPKRADMKRS---MESLIHHFKLYTEGYHVPVGE--VYAAVEAPKGEFG 341
G +A + +K +E++ P GE + EAP+G
Sbjct: 424 GRHAARAIRTAVLAELALKHWQLLVENIGRGDTAVFNPPTFPKGEVRGFGFHEAPRGALS 483
Query: 342 VYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLAD------VSAILGS 386
+++ + P + E G+ +AD + S
Sbjct: 484 HWVVI-EDGAIENYQAVVPSTWNAGPRDGKGQAGPYEAALVGNPIADAKLPLEALRTIHS 542
Query: 387 LDIVFGEV 394
D
Sbjct: 543 FDPCLACA 550
>gi|89073609|ref|ZP_01160131.1| quinone-reactive Ni/Fe hydrogenase, large subunit [Photobacterium
sp. SKA34]
gi|89050636|gb|EAR56122.1| quinone-reactive Ni/Fe hydrogenase, large subunit [Photobacterium
sp. SKA34]
Length = 567
Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats.
Identities = 49/357 (13%), Positives = 78/357 (21%), Gaps = 90/357 (25%)
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
L+ L E + G H GGV + + F
Sbjct: 190 LSHYLKALEVQRVGAEMMAVWGGKNPHPQSIVVGGVTCVRDMLDPARLQEFKQKFVHIAE 249
Query: 186 DIS-----DLLTGNRIFKQRNVNIGTVKLEDAWG----------WGFSGVMIR------- 223
I D+L F + +G + F+G +IR
Sbjct: 250 FIERAYQADILMSAAAFGREPSVLGGCNISTFMCSESIQLNEEEQLFTGGVIRNKDLTKA 309
Query: 224 --------GSGAAWDLR----KSQPYECYSELDFDIPIGKH-------------GDCYDR 258
P++ + + I + + +
Sbjct: 310 ENVDLSLIAEDVTHSWFNADKPQHPFDGTTIPEHTPFIERDTLEGKRPTINEAGKYSWVK 369
Query: 259 YLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR-----------ADMKRS 307
E E + VN G V PV K A M +
Sbjct: 370 SPRYNGEPVEVGPLATIAVNYAKGNPYVVPVVNEFLKTTGLPAGALFTTLGRTAARMLHT 429
Query: 308 MESLIHHFKL--------------YTEGYHVPVGE--VYAAVEAPKGEFGVYLISDGGNK 351
+ H Y E P E +EAP+G +L
Sbjct: 430 LIIARHGLTTFESMVANLNSDQTTYIEPTIDPKKEYKGVGVIEAPRGLLSHWLRIK-DGL 488
Query: 352 PYRCKIRAPGYAH---------LQAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
+ P + + E G +L D V ++ S D
Sbjct: 489 VENYQAVVPTTWNASPIDGNGKIAPYEASLVGLKLEDPIKPLEVLRVIHSFDPCMAC 545
Score = 98.1 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 40/101 (39%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +ELD V L RG E +++ +T R+ V +
Sbjct: 13 IEGHLRIEVELDANNVIEKAYASSTLFRGLEIIMKGRTPYDVGLLMQRICGVCTSSHYLC 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
LAVE + ++PI + IR L + H+++
Sbjct: 73 GTLAVENAINAQVPINAKYIRSLILTSLEMHDHIVHFYLLH 113
>gi|14719751|pdb|1E3D|B Chain B, [nife] Hydrogenase From Desulfovibrio Desulfuricans Atcc
27774
gi|14719753|pdb|1E3D|D Chain D, [nife] Hydrogenase From Desulfovibrio Desulfuricans Atcc
27774
Length = 542
Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats.
Identities = 49/356 (13%), Positives = 88/356 (24%), Gaps = 75/356 (21%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDI--PPEL 169
H ++ L + ++ H + GGV PE
Sbjct: 185 HEGYYMDPEANLVCTAHYLQALRAQVEVAKGMAVFGAKNPHTQFTVAGGVTCYEALTPER 244
Query: 170 VEDIGCWCDSFPSALNDIS--DLLTGNRIFKQRNVNIGTVKLE----------------D 211
++ + + ++ DLL +K GT
Sbjct: 245 IKQFRELYVKARAFIEEVYIPDLLLVASYYKDWGKIGGTNNFMAFGEFPAPGGERDLNSR 304
Query: 212 AWGWGFSGVMIRGSGAAWDLRKSQ--------------PYECYSELDFDIPIGKHGDCYD 257
+ G GS +D K + P+E + F ++
Sbjct: 305 WYKPGVIYDRKVGSVQPFDPSKIEEHVRHSWYEGKARAPFEGETNPHFTFMGDTDKYSWN 364
Query: 258 RYLVRMMEMRESVKIIRQCVNRL-------------LGKNKVGPVSASDPKIVPPKRAD- 303
+ E+ + + V LGK +GP + R
Sbjct: 365 KAPRYDGHAVETGPLAQMLVAYGHNHKTIKPTIDAVLGKLNLGPEALFSTLGRTAARGIQ 424
Query: 304 -------MKRSM---ESLIHHFKLYTEGYHVP-VGEVYAAVEAPKGEFGVYLISDGGNKP 352
M+ + E+ I K E Y VP + +G ++ K
Sbjct: 425 TLVIAQQMENWLNEYENNIVKDKQIVEDYAVPTSARGVGFADVSRGGLSHWMTI-EDGKI 483
Query: 353 YRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
++ P +L A E G +AD + + S D
Sbjct: 484 DNFQLVVPTTWNLGPRDDKGVPSAAEAALVGTPVADPKRPVEILRTIHSFDPCIAC 539
Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats.
Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 1/105 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E++G +++ L RG E +++ + A + R V A
Sbjct: 23 IEGHLRIEVEVEGGVIKEAR-SCATLFRGIETILKGRDPRDAQHFTQRTCGVCTYTHALA 81
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
+E + IP IR L + HL++
Sbjct: 82 STRCLEDAINKPIPANATYIRNLVLGNQFMHDHLVHFYHLHALDF 126
>gi|116750374|ref|YP_847061.1| nickel-dependent hydrogenase large subunit [Syntrophobacter
fumaroxidans MPOB]
gi|116699438|gb|ABK18626.1| nickel-dependent hydrogenase, large subunit [Syntrophobacter
fumaroxidans MPOB]
Length = 546
Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats.
Identities = 44/368 (11%), Positives = 82/368 (22%), Gaps = 75/368 (20%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H +++ A+ L ++ + + G H G
Sbjct: 162 GQLGIFANGYWGHPAYKLPPEVNLLAVAHYLQALRQQARTARMHAIFGGKNPHVQSLVVG 221
Query: 160 GVHQDI---PPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLE------ 210
GV P L E + ++ L F + IG K
Sbjct: 222 GVTCATDLTPDRLAEFKYLYKETMDFVKQYYIPDLKAVAGFYKDWGKIGGTKNFLVYGEF 281
Query: 211 -----------------DAWGWGFSGVMIRGSGAAWDLRKS-------QPYECYSELDFD 246
G + R P E ++ ++
Sbjct: 282 PQSDKEPDSFLFPRGAIFKRNIGQVQAVDMAQVQEHVKRSWYEGDKALHPSEGETKPKYE 341
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD--- 303
+ + + E E + R V G K +
Sbjct: 342 ALDVEKRYSWMKAPRYKGEPMEVGPLARVLVAYGKGHAPTKKAVDGLLKELGVPVDALFS 401
Query: 304 ------------------MKRSMESLIHHF-----KLYTEGYHVPVGEVYAAVEAPKGEF 340
M+ + LI + K+Y + + P+G
Sbjct: 402 TLGRTAARGLETAIIGDSMEGWLNQLIENVGKGNTKIYQDYQMPAEAMGAGLNDVPRGAL 461
Query: 341 GVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VSAILG 385
G ++ K ++ P +L +E G +AD + +
Sbjct: 462 GHWVQIK-DQKIANFQLVVPSTWNLGPRCAQNKPGPVEEALMGTPVADPKRPVEILRTVH 520
Query: 386 SLDIVFGE 393
S D
Sbjct: 521 SFDPCIAC 528
Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E+ V L RG E +++ + A + R V A
Sbjct: 13 IEGHLRIEVEVTNGKVSNA-WSSSTLFRGLEIMLQGRDPRDAYLFTQRACGVCTYVHGLA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AV+ I +P +LIR L + H+++
Sbjct: 72 SVRAVDDAAKITVPENARLIRNLLLGAQFLHDHIVHFYHLHA 113
>gi|308273238|emb|CBX29841.1| hypothetical protein N47_F15360 [uncultured Desulfobacterium sp.]
Length = 147
Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 2/116 (1%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
+N GP G L + ++ + +G + RG E ++ ++ L A R+
Sbjct: 23 MKVNLGPVT-RIEGHLNIETTVENNKIVDARC-MGEMFRGFEVFLQGRSPLDAQQITQRI 80
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
V P A + A E + + +P G+++ L + +LL A
Sbjct: 81 CGVCPYAHAVASSYAQESVYKLNVPPNGRIMHNLIQGANHLYDYLLQFYQLAALDF 136
>gi|303256901|ref|ZP_07342915.1| nickel-iron hydrogenase, large subunit [Burkholderiales bacterium
1_1_47]
gi|302860392|gb|EFL83469.1| nickel-iron hydrogenase, large subunit [Burkholderiales bacterium
1_1_47]
Length = 589
Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats.
Identities = 33/353 (9%), Positives = 73/353 (20%), Gaps = 50/353 (14%)
Query: 89 GIEIPIRGQLIRVLYSEIGRIL-SHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERAS 147
G+ PI I ++ + L +V + + +Y+
Sbjct: 223 GVPCPINMSDTGAQGIMINQVWMNFLRDVAKSTIRFIDEVYYPDLMAMQAYYKDWYKIGG 282
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTV 207
G + + I + + + V+
Sbjct: 283 GLANKNLLCYGDFPAYANDMSEKSLVMPNGAVIDGKFDQILPVDLKDPNQIKEFVD--HS 340
Query: 208 KLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMR 267
+ +DL K+ ++ D + +
Sbjct: 341 WYSYPKPDEGLHPWEGITDPNFDLGKAGVDYEGTKTDIKWLTTNARYSWIKAPRWNGHAM 400
Query: 268 ESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD---------------------MKR 306
E+ + R V + + M
Sbjct: 401 ETGPLARMVVAYAKKMPRQKELVDRALAQAGVPVEALFSTLGRTLCRGLEAKMCAQLMLE 460
Query: 307 SMESLIHHFK----------LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCK 356
++ L + K + + EAP+G G + + +
Sbjct: 461 YVDELEANIKAGDEVAANMDKWEPSTWPKECKGVGQCEAPRGALGHWCVIK-DGVIENWQ 519
Query: 357 IRAPGYAH---------LQAMEFLCKGHQLA------DVSAILGSLDIVFGEV 394
P + L A E G +A ++ + S D
Sbjct: 520 AVVPSTWNASPRDTKGQLGAYEAALLGTPVAVADQPLEILRTIHSFDPCLACA 572
Score = 99.2 bits (246), Expect = 1e-18, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 2/102 (1%)
Query: 20 AHGVLRLILELD-GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G LR+ LD ++ G + RG E +++ + A + +R+ V
Sbjct: 14 IEGHLRMQAVLDENNVIVDA-MSTGTMWRGLEVILKGRDPRDAWAFVERVCGVCTGIHAL 72
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ AVE LGI+IP +IR L + HL +
Sbjct: 73 SAVRAVEDALGIQIPKNANIIRNLMNATLYSQDHLTHFYQLH 114
>gi|269102785|ref|ZP_06155482.1| quinone-reactive Ni/Fe hydrogenase large subunit [Photobacterium
damselae subsp. damselae CIP 102761]
gi|268162683|gb|EEZ41179.1| quinone-reactive Ni/Fe hydrogenase large subunit [Photobacterium
damselae subsp. damselae CIP 102761]
Length = 567
Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats.
Identities = 43/383 (11%), Positives = 76/383 (19%), Gaps = 90/383 (23%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L + T ++ L+ L E + G H G
Sbjct: 164 GNLGPFANAYWGNPTYKFTPEQNLIGLSHYLKALEIQRIAAECMALWGGKNPHPQSIVVG 223
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALN-----DISDLLTGNRIFKQRNVNIGTVKLEDAW- 213
GV + + F +DL+ + + +G +
Sbjct: 224 GVTCVRDMLDPARLQEFKQKFQHVAEFVERAYYADLVMAAKAYATSPDVLGGCNVHTFMA 283
Query: 214 ------------------------GWGFSGVMIRGSGAAWDLRK-SQPYECYSELDFDIP 248
+ QP Y
Sbjct: 284 AESILLNPDDHLFTDGVIRNCDLSHAENVDPSLIEEDVTHAWYDAKQPQHPYDGTTIPEK 343
Query: 249 I----------------GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPV--- 289
+ + E E + VN G V V
Sbjct: 344 TPFVQRETLMGNIPTINEAGKYSWVKSPRYNGEPVEVGPLATIAVNYARGNKPVVDVVDE 403
Query: 290 ---------------------SASDPKIVPPKRADMKRSMES-LIHHFKLYTEGYHVPVG 327
++ + SM + L Y + P
Sbjct: 404 FLTKTGLPAQALFTTLGRTAARMLHTTVIARHGLETFESMVANLNSDQTTYIKPTIDPDK 463
Query: 328 E--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQ 376
E +EAP+G ++ G + P + + E G +
Sbjct: 464 EYKGVGILEAPRGLLSHWIRIKG-GLVENYQAVVPTTWNAGPIDGNGRIGPYEASLVGLK 522
Query: 377 LA------DVSAILGSLDIVFGE 393
LA ++ I+ S D
Sbjct: 523 LAEPTKPLEILRIIHSFDPCMAC 545
Score = 99.6 bits (247), Expect = 8e-19, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 41/104 (39%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +ELD V L RG E +++ +T R+ V +
Sbjct: 13 IEGHLRIEVELDENNVVEKAYASSTLFRGLEIIMKGRTPYDVGLLMQRICGVCTSSHYLC 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
LAVE + ++P+ + IR L ++ H+++
Sbjct: 73 GTLAVEDAINAQVPLNAKYIRSLILSTLQLHDHIVHFYILHGMD 116
>gi|7239222|gb|AAF43138.1|AF216303_2 [NiFe] hydrogenase large subunit [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 543
Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats.
Identities = 49/356 (13%), Positives = 88/356 (24%), Gaps = 75/356 (21%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDI--PPEL 169
H ++ L + ++ H + GGV PE
Sbjct: 186 HEGYYMDPEANLVCTAHYLQALRAQVEVAKGMAVFGAKNPHTQFTVAGGVTCYEALTPER 245
Query: 170 VEDIGCWCDSFPSALNDIS--DLLTGNRIFKQRNVNIGTVKLE----------------D 211
++ + + ++ DLL +K GT
Sbjct: 246 IKQFRELYVKARAFIEEVYIPDLLLVASYYKDWGKIGGTNNFMAFGEFPAPGGERDLNSR 305
Query: 212 AWGWGFSGVMIRGSGAAWDLRKSQ--------------PYECYSELDFDIPIGKHGDCYD 257
+ G GS +D K + P+E + F ++
Sbjct: 306 WYKPGVIYDRKVGSVQPFDPSKIEEHVRHSWYEGKARAPFEGETNPHFTFMGDTDKYSWN 365
Query: 258 RYLVRMMEMRESVKIIRQCVNRL-------------LGKNKVGPVSASDPKIVPPKRAD- 303
+ E+ + + V LGK +GP + R
Sbjct: 366 KAPRYDGHAVETGPLAQMLVAYGHNHKTIKPTIDAVLGKLNLGPEALFSTLGRTAARGIQ 425
Query: 304 -------MKRSM---ESLIHHFKLYTEGYHVP-VGEVYAAVEAPKGEFGVYLISDGGNKP 352
M+ + E+ I K E Y VP + +G ++ K
Sbjct: 426 TLVIAQQMENWLNEYENNIVKDKQIVEDYAVPTSARGVGFADVSRGGLSHWMTI-EDGKI 484
Query: 353 YRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
++ P +L A E G +AD + + S D
Sbjct: 485 DNFQLVVPTTWNLGPRDDKGVPSAAEAALVGTPVADPKRPVEILRTIHSFDPCIAC 540
Score = 106 bits (266), Expect = 4e-21, Method: Composition-based stats.
Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 1/105 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E++G +++ L RG E +++ + A + R V A
Sbjct: 24 IEGHLRIEVEVEGGVIKEAR-SCATLFRGIETILKGRDPRDAQHFTQRTCGVCTYTHALA 82
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
+E + IP IR L + HL++
Sbjct: 83 STRCLEDAINKPIPANATYIRNLVLGNQFMHDHLVHFYHLHALDF 127
>gi|271501250|ref|YP_003334275.1| nickel-dependent hydrogenase large subunit [Dickeya dadantii
Ech586]
gi|270344805|gb|ACZ77570.1| nickel-dependent hydrogenase large subunit [Dickeya dadantii
Ech586]
Length = 568
Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ V + G + RG E++++ + A R+ V A
Sbjct: 13 IEGHLRIDCEIENGKVTKA-WSSGTMWRGMEEIVKGRDPRDAWMIVQRICGVCTTVHAIA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LG+ +P+ Q IR L I H+++ +
Sbjct: 72 SVRAVENGLGLNVPVNAQYIRNLILAAHSIHDHIVHFYQLSA 113
Score = 92.7 bits (229), Expect = 1e-16, Method: Composition-based stats.
Identities = 41/390 (10%), Positives = 80/390 (20%), Gaps = 96/390 (24%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYF--- 156
L H +++ A+ L E + G H
Sbjct: 162 GQLGIFANGYWGHPAMSLPPEVNLIAVAHYLQALECQRDANRIVAILGGKSPHIQNLAVG 221
Query: 157 -RPGGVHQDIP-----------PELVEDIGCWCDSFPS---------------------A 183
++ D P ++ +G + +
Sbjct: 222 GVANPINLDAPSVLNLERLMYVKSFIDRLGDFIEQVYKVDCAVIAAHYPQWLSLGRGADH 281
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGV-------MIRGSGAAWDLRKSQP 236
+ +L T N+ + + + IR SG + QP
Sbjct: 282 YLSVPELPTDNKNGSFLLAGGYIENSDLSTYRPITSHSDKFLIEGIRESGKHAWYQDDQP 341
Query: 237 YECYSELDFDIPIGKHGD---CYDRYLVRMMEMRESVKI--------------------- 272
+ L G H D + + + E +
Sbjct: 342 LAPWEGLTRPKYTGWHEDGKYSWVKSPTFYGKTVEVGPLAWLLCGLAAKHKDTLTHFSQV 401
Query: 273 ------------IRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTE 320
+ ++ LG+ V K ++ H
Sbjct: 402 KAAYQTLSGHQLEEKHLHSTLGRVIGRTVHCCVLKDTLAQQWQALVDNIGKGDHQTFIKP 461
Query: 321 GYHVP-VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA-----HL----QAMEF 370
+ E P+G +++ K + P + E
Sbjct: 462 DFSPDTEFHGVGFGEMPRGMLSHWVVFK-NGKITNYQAVVPSTWTSCPRNGEDKPGPYEQ 520
Query: 371 LCKGHQLAD------VSAILGSLDIVFGEV 394
G +AD V + S D
Sbjct: 521 SLVGTPVADPHKPLEVVRTIHSFDPCMSCA 550
>gi|330998849|ref|ZP_08322576.1| membrane-bound hydrogenase 1 large subunit [Parasutterella
excrementihominis YIT 11859]
gi|329576063|gb|EGG57582.1| membrane-bound hydrogenase 1 large subunit [Parasutterella
excrementihominis YIT 11859]
Length = 589
Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats.
Identities = 33/353 (9%), Positives = 73/353 (20%), Gaps = 50/353 (14%)
Query: 89 GIEIPIRGQLIRVLYSEIGRIL-SHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERAS 147
G+ PI I ++ + L +V + + +Y+
Sbjct: 223 GVPCPINMSDTGAQGIMINQVWMNFLRDVAKSTIRFIDEVYYPDLIAMQAYYKDWYKIGG 282
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTV 207
G + + I + + + V+
Sbjct: 283 GLANKNLLCYGDFPAYANDMSEKSLVMPNGAVIDGKFDQILPVDLKDPNQIKEFVD--HS 340
Query: 208 KLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMR 267
+ +DL K+ ++ D + +
Sbjct: 341 WYSYPKPDEGLHPWEGITDPNFDLGKAGVDYEGTKTDIKWLTTNARYSWIKAPRWNGHAM 400
Query: 268 ESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD---------------------MKR 306
E+ + R V + + M
Sbjct: 401 ETGPLARMVVAYAKKMPRQKELVDRALAQAGVPVEALFSTLGRTLCRGLEAKMCAQLMLE 460
Query: 307 SMESLIHHFK----------LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCK 356
++ L + K + + EAP+G G + + +
Sbjct: 461 YVDELEANIKAGDEVAANMDKWEPSTWPKECKGVGQCEAPRGALGHWCVIK-DGVIENWQ 519
Query: 357 IRAPGYAH---------LQAMEFLCKGHQLA------DVSAILGSLDIVFGEV 394
P + L A E G +A ++ + S D
Sbjct: 520 AVVPSTWNASPRDTKGQLGAYEAALLGTPVAVADQPLEILRTIHSFDPCLACA 572
Score = 99.2 bits (246), Expect = 1e-18, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 2/102 (1%)
Query: 20 AHGVLRLILELD-GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G LR+ LD ++ G + RG E +++ + A + +R+ V
Sbjct: 14 IEGHLRMQAVLDENNVIVDA-MSTGTMWRGLEVILKGRDPRDAWAFVERVCGVCTGIHAL 72
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ AVE LGI+IP +IR L + HL +
Sbjct: 73 SAVRAVEDALGIQIPKNANIIRNLMNATLYSQDHLTHFYQLH 114
>gi|156743090|ref|YP_001433219.1| nickel-dependent hydrogenase large subunit [Roseiflexus
castenholzii DSM 13941]
gi|156234418|gb|ABU59201.1| nickel-dependent hydrogenase large subunit [Roseiflexus
castenholzii DSM 13941]
Length = 570
Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats.
Identities = 46/394 (11%), Positives = 91/394 (23%), Gaps = 100/394 (25%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H ++ A+ L E ++ ++ + G H + G
Sbjct: 161 GQLGIFGNAYWGHPAYALPPEANLMAVAHYLEALEWQKDVIRIHAILGGKNPHPQTYLVG 220
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALND----------ISDLLTGNRIFKQR---NVNIGT 206
G+ + P + I + L D I D+L +K +G
Sbjct: 221 GMAAPLDPNAQQAINTIRIAQLKMLADQVRTFVGKVYIPDILAIASFYKDWAGLGAGVGN 280
Query: 207 VKLEDAWGWGFSGVMIRG-------------------------SGAAWDLRKS------- 234
+ G + A +
Sbjct: 281 YLSYGDFPAAKDGNVASYWLPRGVIVNKNIDQKPQPVNHERVTEYVAHSWFRYGEGDQQA 340
Query: 235 -QPYECY-------SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIR------------ 274
P++ + +D + + E + R
Sbjct: 341 LHPWKGETIPNYTGPQPPYDWLNTDGKYSWLKTPRYDDMPMEVGPLARMLVGYASGQQRI 400
Query: 275 -QCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLI------------------HHF 315
+ VN L + VGP + RA + L+ H+
Sbjct: 401 QELVNAALKQLGVGPAALFSTLGRTAARAIETALIAELLPGWIDELAANMAAGNLVVHNS 460
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQ 366
++ + ++EAP+G G ++ K + P +
Sbjct: 461 AKWSPANWPQEAVGWGSMEAPRGSLGHWVRIR-DGKIVNYQAVVPTTWNGSPRDARDVRG 519
Query: 367 AMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
E +AD + + S D
Sbjct: 520 PYEAALIDTPIADPEQPIEILRTIHSFDPCMACA 553
Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +++ V + RG E ++ + A + R+ V A
Sbjct: 12 IEGHLRIEAQIERGRVVDA-WSSSTMFRGMEIVLRGRDPRDAWVFAQRICGVCTTVHALA 70
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE L I+IP +LIR + + + H+++
Sbjct: 71 SVRAVENALDIQIPDNARLIRNIIAGAQYVQDHVIHFYHLHA 112
>gi|148241010|ref|YP_001220511.1| uptake hydrogenase large subunit [Bradyrhizobium sp. BTAi1]
gi|146411386|gb|ABQ39839.1| Uptake hydrogenase large subunit (Hydrogenlyase) (Membrane-bound
hydrogenase large subunit) [Bradyrhizobium sp. BTAi1]
Length = 570
Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats.
Identities = 40/385 (10%), Positives = 91/385 (23%), Gaps = 103/385 (26%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQD------- 164
H +++ A+T L + ++ + G H + G
Sbjct: 170 HPAYKLPPEVNLLAVTHYLEALAWQRDVVKIHAIFGGKNPHPNFVVGGAPCAISETAHAT 229
Query: 165 -IPPELVEDIGCWCDSFPSALN-----DISDLLTGNRIFKQRNVNIGTVKLEDAWGWG-- 216
+ P+ + +G S ++ D + + + R +G + G
Sbjct: 230 AVTPDNLRFVGEMIGKMRSFVDQVYLPDTLAIAGYYKDWASRGEGVGNFLSFGEFPRGVG 289
Query: 217 --------------------------FSGVMIRGSGAAWDLRKS--------QPYECYSE 242
F A PY+ +
Sbjct: 290 AAERTTLRIPPGVILNRDLSKVMSVDFEDPTEIQEFVAHSWYDYSAGKQTGLHPYDGETN 349
Query: 243 LDFDIPIGKHG-------DCYDRYLVRMMEMRESVKIIRQCV-----NRLLGKNKVGPVS 290
L++ P + + + E + R + +R +
Sbjct: 350 LNYTGPTPPYEQLDVDQSYSWIKSPRWKGLPMEVGPLARVLILYASGDRATRGLVDHSLG 409
Query: 291 ASDP-------------------KIVPPKRADMKRSMESLI-------HHFKLYTEGYHV 324
D K++ + + M ++ + I + L+
Sbjct: 410 RLDLPVSALFSTLGRIAARTLETKLIADEMSGMYDALIARIASGDLATFNDLLFDPSTWP 469
Query: 325 PVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGH 375
+EAP+G ++ + + P + E +GH
Sbjct: 470 KQARGVGVMEAPRGALAHWVTI-EDRRIANYQAVVPSTWNAGPRDTAGREGPYEAALRGH 528
Query: 376 QLAD------VSAILGSLDIVFGEV 394
+L D + + S D
Sbjct: 529 RLHDPAKPIEILRTIHSFDPCLACA 553
Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 39/103 (37%), Gaps = 2/103 (1%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G LR+ E D + R G + RG E +++ + A + R V +
Sbjct: 8 IEGHLRIEAETDAQGNITRAS-SSGTMVRGIEVILKGRDPRDAWAFTQRFCGVCTVVHSI 66
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A AVE LG IP Q IR L + H+++
Sbjct: 67 ASVRAVEYALGYVIPQNAQHIRNLMIAAQFVHDHVMHFYHLHA 109
>gi|220904311|ref|YP_002479623.1| nickel-dependent hydrogenase large subunit [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
gi|219868610|gb|ACL48945.1| nickel-dependent hydrogenase large subunit [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
Length = 558
Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats.
Identities = 49/356 (13%), Positives = 88/356 (24%), Gaps = 75/356 (21%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDI--PPEL 169
H ++ L + ++ H + GGV PE
Sbjct: 186 HEGYYMDPEANLVCTAHYLQALRAQVEVAKGMAVFGAKNPHTQFTVAGGVTCYEALTPER 245
Query: 170 VEDIGCWCDSFPSALNDIS--DLLTGNRIFKQRNVNIGTVKLE----------------D 211
++ + + ++ DLL +K GT
Sbjct: 246 IKQFRELYVKARAFIEEVYIPDLLLVASYYKDWGKIGGTNNFMAFGEFPAPGGERDLNSR 305
Query: 212 AWGWGFSGVMIRGSGAAWDLRKSQ--------------PYECYSELDFDIPIGKHGDCYD 257
+ G GS +D K + P+E + F ++
Sbjct: 306 WYKPGVIYDRKVGSVQPFDPSKIEEHVRHSWYEGKARAPFEGETNPHFTFMGDTDKYSWN 365
Query: 258 RYLVRMMEMRESVKIIRQCVNRL-------------LGKNKVGPVSASDPKIVPPKRAD- 303
+ E+ + + V LGK +GP + R
Sbjct: 366 KAPRYDGHAVETGPLAQMLVAYGHNHKTIKPTIDAVLGKLNLGPEALFSTLGRTAARGIQ 425
Query: 304 -------MKRSM---ESLIHHFKLYTEGYHVP-VGEVYAAVEAPKGEFGVYLISDGGNKP 352
M+ + E+ I K E Y VP + +G ++ K
Sbjct: 426 TLVIAQQMENWLNEYENNIVKDKQIVEDYAVPTSARGVGFADVSRGGLSHWMTI-EDGKI 484
Query: 353 YRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
++ P +L A E G +AD + + S D
Sbjct: 485 DNFQLVVPTTWNLGPRDDKGVPSAAEAALVGTPVADPKRPVEILRTIHSFDPCIAC 540
Score = 106 bits (266), Expect = 5e-21, Method: Composition-based stats.
Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 1/105 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E++G +++ L RG E +++ + A + R V A
Sbjct: 24 IEGHLRIEVEVEGGVIKEAR-SCATLFRGIETILKGRDPRDAQHFTQRTCGVCTYTHALA 82
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
+E + IP IR L + HL++
Sbjct: 83 STRCLEDAINKPIPANATYIRNLVLGNQFMHDHLVHFYHLHALDF 127
>gi|78486376|ref|YP_392301.1| nickel-dependent hydrogenase, large subunit [Thiomicrospira
crunogena XCL-2]
gi|78364662|gb|ABB42627.1| Ni,Fe-hydrogenase large subunit [Thiomicrospira crunogena XCL-2]
Length = 568
Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats.
Identities = 43/404 (10%), Positives = 78/404 (19%), Gaps = 86/404 (21%)
Query: 76 QEHAY-ALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFE 134
+H Y + E L H + ++ + L
Sbjct: 144 HKHPYNCSQGDLAAVQEKLANFVNAGRLGLFANGYWGHAQYKLSPEENLIHMNHYLEALR 203
Query: 135 EREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGN 194
+ ++ G H GGV + + + + + +
Sbjct: 204 IQREVSKAIAIFGGKTPHPQNLVVGGVTSVMDMLNPQRLNDYLFIIKDTQEFLKRAYLPD 263
Query: 195 ------RIFKQRNVNIGTVKLEDAWGWGF---SGVMIRGSGAAW---------------- 229
G G+ + SG W
Sbjct: 264 MKMVVAAYGDNIKAGEGRGHGNFMCSGGYQLSDDEPLFASGIIWGHDFSKIDAFDDTQIT 323
Query: 230 ------DLRKSQPYECYSELDFDIPIGKHGD---------CYDRYLVRMMEMRESVKIIR 274
P Y E + D + + + E R
Sbjct: 324 EEASRSWYADEAPTRPYDETTEPDYTDMNADGTLKTEGKYSWIKAPRYQGQPMEVGPAAR 383
Query: 275 QCVNRLLGKNKVGPVSASD---------------------PKIVPPKRADMKRSMESLIH 313
+ + V P + + LI
Sbjct: 384 MIIGYVKKAKTVRPYMQHFMDDTGLELIDFSSAIGRNAARAVEAEVVCDLIFAFVSELIE 443
Query: 314 HFKLYTEGYH--------VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
+ K Y E + A +E P+G ++ K + P +
Sbjct: 444 NIKYYDETTWTKYDFEALPLETKGRAVLEVPRGMLSHFIRI-EEAKVKNYQAVVPTTWNA 502
Query: 366 Q---------AMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
E G +LAD V + S D
Sbjct: 503 SPKDGQGVRGPYEEAIVGLKLADPQQPLEVLRAVHSFDPCLACA 546
Score = 99.2 bits (246), Expect = 9e-19, Method: Composition-based stats.
Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 2/106 (1%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G LR+ +E+D V G L RG E +++ + R+ V +
Sbjct: 18 IEGHLRVEIEVDEHNTVTEA-WASGQLFRGIETILKGRDPRDTGLIAQRICGVCTNSHYR 76
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
A AVE I P +++R L S + HL++
Sbjct: 77 ASISAVENAYDIVPPRNAEIVRNLVSLALFVQDHLVHYYHLHSLDY 122
>gi|2828557|gb|AAC38282.1| stable NiFe hydrogenase large subunit [Thiocapsa roseopersicina]
Length = 576
Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ ++DGE + + G RG E +++ + A + R+ V + A
Sbjct: 13 IEGHLRIEAQMDGENIAQA-YSSGTSVRGLETILKGRDPRDAWAFAQRICGVCTLVHGIA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+VE L IE+P QLIR L + H+++
Sbjct: 72 SVRSVEDALKIELPPNAQLIRNLMISSQFVHDHVMHFYHLHA 113
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 43/399 (10%), Positives = 87/399 (21%), Gaps = 105/399 (26%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFR-- 157
L H ++ A+ L + + + G H +
Sbjct: 162 GQLGIFANGYWGHPAYKLPPEANLMAVAHYLEALAWQRDVARLHAIFGGKNPHPNFVVGG 221
Query: 158 -PGGVHQDIPPELVEDIGCWCDSFPSALNDISD---------LLTGNRIFKQRNVNIGTV 207
P + D + ++ D + + + + +R +G
Sbjct: 222 VPSPIDIDSDSAINAKRLAEVQQILQSMQTFVDQVYVPDTLAIASFYKDWGERGEGLGNF 281
Query: 208 KLEDAWGWGFS----------GVMIRGS-----------------GAAWDLRKS------ 234
+ GV++ A +
Sbjct: 282 MSYGDLPATGTMDPAQFLFPRGVILNRDLSTIHEIDLHDAGQIQEYVAHSWYEYSGGNDQ 341
Query: 235 --QPYECYSELDFDIPIG----------KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLG 282
PY+ + L++D G G + + E + R + G
Sbjct: 342 GLHPYDGETNLEYDARGGVKPPYTQLDVNDGYSWMKAPRWKGHAMEVGPLARVLLLYASG 401
Query: 283 KNKVGPVSASDPKIVPPKRADMK---------------------RSMESLIHHFK----- 316
+ + + + LI + K
Sbjct: 402 HEQTKELVEMTLTTLDLPVRALYSTLGRTAARTLETKILTDTAQDWYNQLIANIKAGDSR 461
Query: 317 -----LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL------ 365
L+ +EAP+G G +++ K + P +
Sbjct: 462 TFNETLWEPSSWPAEARGAGYMEAPRGALGHWIVIKDR-KIANYQAVVPSTWNAGPRDPS 520
Query: 366 ---QAMEFLCK-GHQLADV------SAILGSLDIVFGEV 394
A E + HQL DV + S D
Sbjct: 521 DQPGAYEAALQDNHQLVDVKQPIEILRTIHSFDPCIACA 559
>gi|194336910|ref|YP_002018704.1| nickel-dependent hydrogenase large subunit [Pelodictyon
phaeoclathratiforme BU-1]
gi|194309387|gb|ACF44087.1| nickel-dependent hydrogenase large subunit [Pelodictyon
phaeoclathratiforme BU-1]
Length = 572
Score = 109 bits (272), Expect = 8e-22, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 41/104 (39%)
Query: 18 PAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQE 77
P G LR+ L+ + G + RG E +++ + A + +R+ V
Sbjct: 11 PRIEGHLRIEATLNDSNMIEEAYSSGTMWRGIEVILKGRDPRDAWAFAERICGVCTTVHA 70
Query: 78 HAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A VE LGI +P ++IR L + HL++
Sbjct: 71 LASVRCVEDALGIAVPTNARIIRNLMNATQVTQDHLVHFYHLHA 114
Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats.
Identities = 42/382 (10%), Positives = 85/382 (22%), Gaps = 100/382 (26%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H +++ A+ L + +++++ + G H Y G P
Sbjct: 175 HPAYKLPPEVNLIAVAHYLEALDFQKEIVKIHTIFGGKNPHPNYLVGGMACAIDPNSDTA 234
Query: 172 DIGCWCDSFPSALND---------ISDLLTGNRIFKQRNVNIGTVKL------------- 209
+++ I DLL +K G
Sbjct: 235 INIERLSMIKKIIDETQTFIDQVYIPDLLAIAGYYKDSLYGGGLGNYLSYGDFPETTLED 294
Query: 210 -------------------------------EDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
E+ ++ G ++ P
Sbjct: 295 FKTLLWPRGAILNKDLTTVIDVDPRDASQVTEEVSHSWYTYTKGDAKGLHPWQGETTPKY 354
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKN-------------K 285
+ F+ + + E + R + G
Sbjct: 355 TGPKPPFEHLDTDKKYSWLKTPRWKNHPMEVGPLARVLIAYAKGDPMIKETVGLVLSTLG 414
Query: 286 VGPVSASDPKIVPPKRAD--------MKRSMESLIHHFK----------LYTEGYHVPVG 327
VGP + R M+ + L+ + K +
Sbjct: 415 VGPEALFSTLGRTAARGIECKQTAGFMRHYYDQLVANIKTGDLRTFNSERWDPSTWPEEC 474
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQL- 377
+ + EAP+G G ++ K +I P + A E KG +
Sbjct: 475 KGFGYTEAPRGSLGHWIHIK-DQKIKEYQIVVPSTWNASPRDANGNSGAYESALKGTPMV 533
Query: 378 -----ADVSAILGSLDIVFGEV 394
++ + S D
Sbjct: 534 NPEQPLEILRTVHSFDPCLACA 555
>gi|225874603|ref|YP_002756062.1| nickel-dependent hydrogenase, large subunit [Acidobacterium
capsulatum ATCC 51196]
gi|225791784|gb|ACO31874.1| nickel-dependent hydrogenase, large subunit [Acidobacterium
capsulatum ATCC 51196]
Length = 578
Score = 109 bits (272), Expect = 9e-22, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E+ G V G + RG E ++ + +A + R+ V A
Sbjct: 12 IEGHLRIEAEMKGNAVGDA-WSSGTMFRGIELILRGRDPREAWIWAQRICGVCTTVHALA 70
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LG+EIP +L+R + + + H+++
Sbjct: 71 SVRAVEDALGVEIPDNARLVRNIIAGAQNVQDHIIHFYHLHA 112
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 40/382 (10%), Positives = 81/382 (21%), Gaps = 100/382 (26%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H +++ A+ + + + + + + G H F GG+ + +
Sbjct: 173 HPAYRLPPEVNLLAVAHYIEALDLQREFIRIHAVLGGKNPHPQTFLVGGMATAMDGNEPD 232
Query: 172 DI---------------------GCWCDSFPSALNDISDLL-----TGNRIFK------- 198
+ + + D GN +
Sbjct: 233 AVINPERITLLNQLVAQGKTFVDQVYLPDVMAIAGYYKDWFGYGEGLGNFMSYGDFTSRY 292
Query: 199 -----QRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKS--------QPYECYSEL-- 243
Q V G V D A PYE +
Sbjct: 293 QNDPAQFLVPRGIVLGRDLSTVHKVEPEKITESVAHSWYHYSGGDETVRNPYEGETNPAY 352
Query: 244 -----DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGK--------------- 283
++ + + + E + R V G
Sbjct: 353 TGPKPPYEYLNVDEKYSWLKAPRYDGKAVEVGPLARVLVAYAAGHQGTRKVVDATLQHFN 412
Query: 284 NKVGPVSASDPKIVPPKRA----------------DMKRSMESLIHHFKLYTEGYHVPVG 327
+ ++ +I D IH+ + +
Sbjct: 413 APPAVLFSTLGRIAARALEAQLLVNQLPGWVAQLDDNMAHGNVAIHNGEKWDPDSWPKSC 472
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLA 378
+ EAP+G G ++ + + P + A E G +A
Sbjct: 473 RGFGFHEAPRGSLGHWIEI-ENKQIVNYQAVVPSTWNAGPRDASGQRGAYEAALAGTPIA 531
Query: 379 D------VSAILGSLDIVFGEV 394
D + + S D
Sbjct: 532 DPERPLEILRTVHSFDPCLACA 553
>gi|329889072|ref|ZP_08267415.1| NADH dehydrogenase, subunit 7 [Brevundimonas diminuta ATCC 11568]
gi|328844373|gb|EGF93937.1| NADH dehydrogenase, subunit 7 [Brevundimonas diminuta ATCC 11568]
Length = 336
Score = 109 bits (272), Expect = 9e-22, Method: Composition-based stats.
Identities = 73/404 (18%), Positives = 125/404 (30%), Gaps = 95/404 (23%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
D + + FGP P LRL L LDG+ V D L+ R E Q
Sbjct: 15 DGLQMDWIEVPFGPFFPGLPAGLRLTLTLDGDTVAASDARS-LVCR-----AELVDGPQM 68
Query: 62 VP--YFDRLDY---VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNV 116
+ +RL ++P+ ++E+ ++ + R E RI SHL +
Sbjct: 69 TAGDFVERLAAMMPLSPVAYRILACASIEEAARVDPGQNARRGRAAAVERERIASHLGWL 128
Query: 117 TTQAMDVGALTPPLWG----FEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVED 172
+ G L + + +G+
Sbjct: 129 ADFGLQSGFLWLAARAGALQLAVQGADIDGIAAQAGA----------------------- 165
Query: 173 IGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLR 232
+ + + + + R I + + SG + R G D R
Sbjct: 166 -----------IRALIRRVETAPLMRMRLGGIAPIGKDTP----ASGPVDRARGGGSDAR 210
Query: 233 KSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSAS 292
P L F++ + + GD R+ +R E+ +S+ +I
Sbjct: 211 IDDPTLA--ALGFEMRLQEGGDALARFRLRCDEIAQSLDLIAAA---------------- 252
Query: 293 DPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGE--FGVYLISDGGN 350
I P+ D+K GE A +E P+G V L+
Sbjct: 253 -GIIAMPQVRDVKTV------------------SGEGAARIETPRGAAQLRVRLV---DG 290
Query: 351 KPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEV 394
K + + P +L +E L +L D + SLD+ E+
Sbjct: 291 KVVQADLDTPSTVNLALVETLTAQQELGDALTAVVSLDLSPWEI 334
>gi|148253509|ref|YP_001238094.1| uptake hydrogenase large subunit [Bradyrhizobium sp. BTAi1]
gi|146405682|gb|ABQ34188.1| Uptake hydrogenase large subunit precursor [Bradyrhizobium sp.
BTAi1]
Length = 596
Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 39/102 (38%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D V R G + RG E ++ + A + +R+ V
Sbjct: 26 IEGHLRVEVNVDSNNVIRNAVSTGTMWRGIETILRGRDPRDAWAFTERICGVCTGTHALT 85
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE L I IP IR + ++ HL++
Sbjct: 86 SVRAVENALVIMIPDNANSIRNIMQLCLQVHDHLVHFYHLHA 127
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 31/392 (7%), Positives = 77/392 (19%), Gaps = 111/392 (28%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H ++ A+ L + +++++ + G H + G
Sbjct: 188 HAAYKLPPEANLMAVAHYLEALDFQKEIVKIHTIYGGKNPHPNWLVGGVPCAINVDGTGA 247
Query: 172 DIGCWCDSF------------PSALNDISDLLTGNRIFKQRNVNIG-------------- 205
+ + D++ +K G
Sbjct: 248 VGAINMERLNLVSSIIDRSIEFVQKVYLPDVVAIGSFYKDWLYGGGLSGKSVMSYGDIPE 307
Query: 206 --------------------------------------TVKLEDAWGWGFSGVMIRGSGA 227
V S + G
Sbjct: 308 NANDYSAKNLKLPRGVILNGNLNEILPIDHGDPEQIQEFVTHSWYKYPDESKGLHPWDGV 367
Query: 228 AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNK-- 285
+ P ++ D + + E + R + + +
Sbjct: 368 TEPNYQLGPNAKGTKTDIKELDEGGKYSWIKAPRWRGNAVEVGPLARYIIGYAQNRPEFK 427
Query: 286 -----------------------------VGPVSASDPKIVPPKRADMKRSMESLIHHFK 316
+A+ + K ++ +S + +
Sbjct: 428 EPTDKLLKALNLPVTALFSTLGRTAARALECDWAATQMRYFQDKLVARIKAGDSSTANIE 487
Query: 317 LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA---------HLQA 367
+ + Y EAP+G ++ + + P ++ A
Sbjct: 488 KWKPESWPKEAKGYGFTEAPRGALAHWIKIKET-RIDNYQCVVPTTWNGSPRDPKGNIGA 546
Query: 368 MEFLCKGHQLAD------VSAILGSLDIVFGE 393
E +AD + + S D
Sbjct: 547 FEASLMDTPMADPEKPLEILRTIHSFDPCLAC 578
>gi|78224522|ref|YP_386269.1| nickel-dependent hydrogenase, large subunit [Geobacter
metallireducens GS-15]
gi|78195777|gb|ABB33544.1| Nickel-dependent hydrogenase, large subunit [Geobacter
metallireducens GS-15]
Length = 566
Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++G + + RG EK+++ + A + R V A
Sbjct: 12 IEGHLRIQAEVNGGQITDA-WSSSTMFRGIEKILKGRDPRDAWYFTQRFCGVCTTVHSIA 70
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE L I +P+ +LIR L I + H+++
Sbjct: 71 SIRAVENALNIRVPLNAELIRNLIIGIQVVQDHVIHFYHLHA 112
Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats.
Identities = 30/252 (11%), Positives = 60/252 (23%), Gaps = 26/252 (10%)
Query: 168 ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGS-- 225
+ I D D + + G E+ ++G
Sbjct: 299 WFPQGIIVGKDLSRVYPIDQQKITESVAHSWYEGGDAGVHPWEEQTEVRYTGPTPPYDMI 358
Query: 226 --GAAWDLRKSQPYECYSELDFDIPIGKHGDC--YDRYLVRMMEMRESVKIIRQCVNRLL 281
+ KS Y+ + + + + + + + + L
Sbjct: 359 DTDKKYSWVKSPRYDGKPMETGPLATILVAYAAGHQGTKGAVELVLGKLGVGPEALFSTL 418
Query: 282 GKNKVGPVSASDPKIVPPKRADMK----RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPK 337
G+ + PK DM + IH+ + + Y AP+
Sbjct: 419 GRTAARGIETLLVAQELPKWLDMLVANVAGGDLAIHNGEKWDPATWPRETAGYGWHNAPR 478
Query: 338 GEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLAD------VSA 382
G G ++ K + P + E G +AD +
Sbjct: 479 GALGHWIRIR-DQKIENYQAVVPSTWNASPRDEKGQRGPYEAALVGTPMADPNKPLEILR 537
Query: 383 ILGSLDIVFGEV 394
+ S D
Sbjct: 538 TIHSFDPCLACA 549
>gi|94267299|ref|ZP_01290835.1| Nickel-dependent hydrogenase, large subunit [delta proteobacterium
MLMS-1]
gi|93452056|gb|EAT02746.1| Nickel-dependent hydrogenase, large subunit [delta proteobacterium
MLMS-1]
Length = 515
Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats.
Identities = 51/502 (10%), Positives = 109/502 (21%), Gaps = 130/502 (25%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD---------- 69
G L++ + ++ GLL RG EK + A R+
Sbjct: 13 VEGHLKIETTIKDGVITEAR-AAGLLFRGLEKALIGYDARVAQQVTQRVCGVCPYSHAEA 71
Query: 70 ---------YVAPMNQEHAYALAVEKLLGIE----------------------------I 92
+ P + + +
Sbjct: 72 AALALEAAMGIRPPANGQLLRNLITGAYQVHDSLLHFYHLSALDFIDIKKVLRYRGSDPV 131
Query: 93 PIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEER---------EKLMVFY 143
R + RI + D + R L
Sbjct: 132 LNRVRDWVQAELRSERIFPGAPFLPRYRDDDQSWDQSDSLLLVRNYFSSFSTLADLHKMV 191
Query: 144 ERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL-----NDISDLLTGNRIFK 198
G H GGV ++ + + + D+ ++ +
Sbjct: 192 AIFGGKAPHPVAIEAGGVTTRPTLGMLAHYRTLLERIEAFVRGPYREDVFNVCRAFPNYF 251
Query: 199 QRNVNIGTVKLEDAWGWGFSGVMIRGSGAAW---DLRKSQPYECYSELDFDIPIGKH--- 252
+ G + G +G A + R+ + + F
Sbjct: 252 KEGRGYGNLLSFPFLPE-ADGENHLFAGGARLAGEYRQLELDAISEDHTFSFYRQPEPSP 310
Query: 253 --------------------------GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKV 286
+ R E+ E + R + +
Sbjct: 311 LAPLATHLLTPLNRQEFQAENERLDGKYSWIRAPRYHGEVMEVGAVARVINSYHHNRAVK 370
Query: 287 GPVSASDPKI--------------------VPPKRADMKRSMESLIHHFKLYTEGYHVPV 326
V ++ ++ +K ++ + ++E
Sbjct: 371 EEVDRTNRELGLTLADYNSVMGRHLGRYLSALLIIERLKEQVDQVKDGVLGFSELEVPRN 430
Query: 327 GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQL 377
EA +G G +L +DG ++ P + A+E + +G ++
Sbjct: 431 AVGVGITEASRGALGHWLATDGNGLIKNYEMVMPSTWNFSPRDAAGKPGAVEKMLQGTRI 490
Query: 378 AD------VSAILGSLDIVFGE 393
+ + I S D
Sbjct: 491 KNPEQPLEAARIARSADPCIAC 512
>gi|226329167|ref|ZP_03804685.1| hypothetical protein PROPEN_03070 [Proteus penneri ATCC 35198]
gi|225202353|gb|EEG84707.1| hypothetical protein PROPEN_03070 [Proteus penneri ATCC 35198]
Length = 567
Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 1/104 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E+D V + G + RG E++++ A R+ V A
Sbjct: 13 IEGHLRVDCEIDNGKVVKA-WSSGTMWRGMEEILKGSDPRDAWIIVQRICGVCTTVHAIA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
AVE LG++IP+ Q IR + + H+++ +
Sbjct: 72 SVRAVEDALGMDIPVNAQYIRNIILASHILHDHIVHFYQLSAMD 115
Score = 90.4 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 12/82 (14%), Positives = 20/82 (24%), Gaps = 16/82 (19%)
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLA 378
EA +G +++ K + P + E G +A
Sbjct: 470 RGVGFEEASRGMLSHWIVFK-DGKITNYQAVVPSTWNAGPRNFNDEPGPYELSLVGTPVA 528
Query: 379 D------VSAILGSLDIVFGEV 394
D V + S D
Sbjct: 529 DPKKPLEVVRTIHSFDPCMACA 550
>gi|317492595|ref|ZP_07951022.1| nickel-dependent hydrogenase [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316919345|gb|EFV40677.1| nickel-dependent hydrogenase [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 567
Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ V + G + RG E++++ A R+ V A
Sbjct: 13 IEGHLRIDCEIENGKVTKA-WSSGTMWRGMEEIVKGNDPRDAWMIVQRICGVCTTIHAIA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE +G E+P+ Q IR L I H+++ +
Sbjct: 72 SVRAVENAIGAEVPVNAQYIRNLIVAAHSIHDHIVHFYQLSA 113
Score = 99.2 bits (246), Expect = 9e-19, Method: Composition-based stats.
Identities = 14/82 (17%), Positives = 22/82 (26%), Gaps = 16/82 (19%)
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLA 378
EAP+G +++ G K + P + E G +A
Sbjct: 470 RGVGFEEAPRGMLSHWIVIKG-GKIENYQAVVPSTWNSGPRNTNDEPGPYEQALIGTPIA 528
Query: 379 D------VSAILGSLDIVFGEV 394
D V + S D
Sbjct: 529 DIEKPLEVVRTVHSFDPCMSCA 550
>gi|148656444|ref|YP_001276649.1| nickel-dependent hydrogenase large subunit [Roseiflexus sp. RS-1]
gi|148568554|gb|ABQ90699.1| nickel-dependent hydrogenase, large subunit [Roseiflexus sp. RS-1]
Length = 570
Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats.
Identities = 41/394 (10%), Positives = 94/394 (23%), Gaps = 100/394 (25%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H ++ A+ L E ++ ++ + G H + G
Sbjct: 161 GQLGIFGNAYWGHPAYALPPEANLMAVAHYLEALEWQKDIIRIHAILGGKNPHPQTYLVG 220
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALND----------ISDLLTGNRIFKQR---NVNIGT 206
G+ + P + I + L + I D+L +K +G
Sbjct: 221 GMATPLDPNAQQAINTIRIAQLKTLAEQARTFVNKVYIPDILAIASFYKDWAGLGAGVGN 280
Query: 207 VKLEDAW----------GWGFSGVMIR---------------GSGAAWDLRKS------- 234
+ W GV++ A +
Sbjct: 281 YLSYGDFPAAKDSNVASYWLPRGVILNKNIDEKPLPMSHEKVTEYVAHSWFRYSEGDQQA 340
Query: 235 -QPYECY-------SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKV 286
P+ + ++ + + + E + R + G+ ++
Sbjct: 341 LHPWRGETIPNYTGPQPPYEWLNTDSKYSWLKTPRYDDQPMEVGPLARMLIGYAAGQQRI 400
Query: 287 GPVSASDPKI---------------------VPPKRADMKRSMESL----------IHHF 315
+ + K + + ++ L IH+
Sbjct: 401 QELVNAVLKQLGVGPAALFSTLGRTAARAIETALIAELLPQWIDELAANIASGNLAIHNS 460
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQ 366
++ + ++EAP+G G ++ K + P +
Sbjct: 461 TKWSPANWPQEAVGWGSMEAPRGSLGHWVRIR-DGKIVNYQAVVPTTWNGSPRDARDVRG 519
Query: 367 AMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
E +AD + + S D
Sbjct: 520 PYEAALIDTPIADPEQPIEILRTIHSFDPCMACA 553
Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +++ V + RG E ++ + A + R+ V A
Sbjct: 12 IEGHLRIEAQIERGRVVDA-WSSSTMFRGVEIILRGRDPRDAWVFTQRICGVCTTVHALA 70
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE L I+IP +L+R + + + H+++
Sbjct: 71 SVRAVENALDIQIPDNARLVRNIIAGAQYVQDHVIHFYHLHA 112
>gi|216409148|dbj|BAH02018.1| Ni/Fe-hydrogenase large subunit [Hydrogenimonas thermophila]
Length = 578
Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats.
Identities = 48/400 (12%), Positives = 88/400 (22%), Gaps = 99/400 (24%)
Query: 91 EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSR 150
++ + + L H T ++ AL+ L E + G
Sbjct: 157 KVKKFAENPQGLGPFANAYWGHPTYRFTPEQNLIALSHYLKALELQRVAARMMAIFGGKN 216
Query: 151 MHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS-----DLLTGNRIFKQR---NV 202
H GGV + + +G W F N + D++ ++K
Sbjct: 217 PHPQSLTVGGVTCIMDLQDPARMGEWMAQFQEMANFVINAYQADIIMAAEMYKDEPSVTK 276
Query: 203 NIGTVKLEDAWGWGFS-GVMIRGSGA----------------------AWDLRKSQPYEC 239
IG G + SG + +QP
Sbjct: 277 PIGVKNFMAHEDMLIGRGDYLFSSGYVLNGDLSKAFGINEDLITEEATHSWYKDNQPLHP 336
Query: 240 YSELDFDIPIG---------------------KHGDCYDRYLVRMMEMRESVKIIRQCVN 278
Y+ G + + + E + V+
Sbjct: 337 YNGKTNPNYTGLRDGESVGPDGKMAHSKLIDESKKYSWIKSPRYDGQPMEVGPLACMVVS 396
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSM--------------ESLIHHFKLYTEGYHV 324
G +V K + ++ E+ + F E V
Sbjct: 397 YAKGNKRVQKAVNDFLKRTGLPVEALFTTLGRTAGRMLQAKIIAENGLTAFNNLVENLKV 456
Query: 325 P---------------VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM- 368
G V P+G ++ + P + M
Sbjct: 457 DQTTCAPYVIDKNKEYKGRGIGDV--PRGMLSHWIRIK-NGVVENYQAVVPSTWNAGPMD 513
Query: 369 --------EFLCKGHQLAD------VSAILGSLDIVFGEV 394
E G ++ D + I+ S D
Sbjct: 514 ANGRQGPYEADLVGLKIHDLTQPLEIIRIIHSYDPCIACA 553
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 32/187 (17%), Positives = 59/187 (31%), Gaps = 25/187 (13%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR + ++ E V L RG E + + + R+ V +
Sbjct: 14 IEGHLRAEVVVNDEGVVENAYVSSTLWRGLEVIAKGRDPRDVPFMMQRICGVCTFSHYLK 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA------------------- 120
+AVE LGI+IP+ +L R L + + H+++
Sbjct: 74 STMAVEDALGIKIPLNAELTRTLMNISLFLHDHVVHFYQLHGLDWVDIVSALKADPKKAS 133
Query: 121 ------MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIG 174
D T +EK+ F E G A + ++ P + + +
Sbjct: 134 ELAFKYADDPIATGVNDLIRVQEKVKKFAENPQGLGPFANAYWGHPTYRFTPEQNLIALS 193
Query: 175 CWCDSFP 181
+ +
Sbjct: 194 HYLKALE 200
>gi|291287132|ref|YP_003503948.1| Cytochrome-c3 hydrogenase [Denitrovibrio acetiphilus DSM 12809]
gi|290884292|gb|ADD67992.1| Cytochrome-c3 hydrogenase [Denitrovibrio acetiphilus DSM 12809]
Length = 560
Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E+DG V + + RG EK++ + A + R V +
Sbjct: 13 IEGHLRIDFEVDGGKVSKA-WSSAQMWRGIEKILIGRDPRDAWVFAQRFCGVCTTVHAIS 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
++E +E+P+ QL+R + + H+++ +
Sbjct: 72 SIRSLENAYNVEVPLNAQLVRNIMIAQHSLQDHIVHFYHLSA 113
Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats.
Identities = 44/371 (11%), Positives = 90/371 (24%), Gaps = 89/371 (23%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H + +++ A L + ++K G H GGV I +
Sbjct: 174 HPAMKLSPEVNLMAAAHYLKALDYQKKAASAVAILGGKDPHIQNLCMGGVATAINMDNEA 233
Query: 172 DIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGS------ 225
+ + +L + + N ++ K +G G +
Sbjct: 234 TLNMERVALLRSLMEETRDFVKNVLYPDVLAIGSMYKEWFKYGRGVDNYLAIPEFPLDAT 293
Query: 226 --------GAAWDLR-----------------------KSQPYE---------CYSELDF 245
G D K YE +E +
Sbjct: 294 MTKFDMSGGIIHDGDLKNFRLLKDHKDEALINGTTESTKHAWYEDGKPKNPFQGETEPKY 353
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKV------------------- 286
+ + + + + + G V
Sbjct: 354 SEFDPDGKYTWCKAPRLDGRAIQVGPVAQILASYAAGDKHVKTLVDNAVSKIGITVNDLQ 413
Query: 287 ----GPVSASDPKIVPPKRADMKRSM--ESLIHHFKLYTEGYHVPVGE--VYAAVEAPKG 338
V+ + ++ ++ M ++L +YT +P+GE EAP+G
Sbjct: 414 STMGRHVTRAIRSVIMADKSIKYLDMLIDNLAKGDNVYTNHVEMPMGEYQGVGFHEAPRG 473
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLAD------VSAI 383
+++ + K + P + E G+ +AD V
Sbjct: 474 TLSHWMVIN-NGKLTNYQAVVPSTWNASPRDEENVAGPYEQSILGNPVADIEKPLEVIRT 532
Query: 384 LGSLDIVFGEV 394
+ S D
Sbjct: 533 VHSFDPCIACA 543
>gi|260429003|ref|ZP_05782980.1| hypothetical protein
gi|260419626|gb|EEX12879.1| [Ni/Fe] hydrogenase, large subunit [Citreicella sp. SE45]
Length = 597
Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 41/102 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + ++ E + G + RG E +++ + A + +R+ V
Sbjct: 26 IEGHMRCEVNVNDENIITNAVSTGTMWRGLEVILKGRDPRDAWAFTERICGVCTGTHALT 85
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI+IP IR + ++ H+++
Sbjct: 86 SVRAVEDALGIQIPDNANSIRNMMQLALQMHDHIVHFYHLHA 127
Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats.
Identities = 33/282 (11%), Positives = 65/282 (23%), Gaps = 49/282 (17%)
Query: 159 GGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
+ DIP + P DL + + + + + +G
Sbjct: 300 CLAYGDIPEHPNDFSPEQL-HLPRGAIINGDLTQVHDVDPRDPEQVQEFVDHSWYTYGEP 358
Query: 219 GVMIR-GSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCV 277
G + G + P + D + + E + R V
Sbjct: 359 GKGLHPWDGVTEPKYELGPNSKGTRTDIKELDEAAKYSWIKAPRWRGHAMEVGPLARYVV 418
Query: 278 NRLLGKNKVGPVSASDPKIVPPKRADM--------KRSMES-----LIHHF--------- 315
G + + + + R++ES L HF
Sbjct: 419 GYAKGHEDIKGQVDGLLRDMGLPLEAVFSTLGRTAARALESEYCGRLTQHFFDKLINNIR 478
Query: 316 ---------KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA--- 363
+ + EAP+G G ++ + + P
Sbjct: 479 NGDQSTANIEKWDPSTWPKEARGVGMTEAPRGALGHWIKI-EDGRIDNYQCVVPTTWNGS 537
Query: 364 ------HLQAMEFLCKGHQLA------DVSAILGSLDIVFGE 393
++ A E ++ +V L S D
Sbjct: 538 PRDTAGNIGAFEASLMNTRVERPEEPVEVLRTLHSFDPCLAC 579
>gi|294634926|ref|ZP_06713445.1| nickel-iron hydrogenase, large subunit [Edwardsiella tarda ATCC
23685]
gi|291091699|gb|EFE24260.1| nickel-iron hydrogenase, large subunit [Edwardsiella tarda ATCC
23685]
Length = 597
Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats.
Identities = 20/104 (19%), Positives = 42/104 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + ++ + + G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNINDQNIITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
A+E +GI++P +IR + HL++ A
Sbjct: 87 SVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130
Score = 90.0 bits (222), Expect = 6e-16, Method: Composition-based stats.
Identities = 15/93 (16%), Positives = 25/93 (26%), Gaps = 16/93 (17%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQ 366
+ + EAP+G G + K + P + +
Sbjct: 488 EKWEPATWPQHCRGIGFTEAPRGALGHWASIR-DQKIELYQCVVPTTWNASPRDPKGQIG 546
Query: 367 AMEFLCKGHQLA------DVSAILGSLDIVFGE 393
A E G Q+A ++ L S D
Sbjct: 547 AYEAALMGTQMAIPDQPLEILRTLHSFDPCLAC 579
>gi|306812581|ref|ZP_07446774.1| hydrogenase 1 large subunit [Escherichia coli NC101]
gi|222032696|emb|CAP75435.1| hydrogenase-1 large chain [Escherichia coli LF82]
gi|305853344|gb|EFM53783.1| hydrogenase 1 large subunit [Escherichia coli NC101]
gi|312945485|gb|ADR26312.1| hydrogenase 1 large subunit [Escherichia coli O83:H1 str. NRG 857C]
Length = 597
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 42/104 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + ++ + V G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
A+E +GI++P +IR + HL++ A
Sbjct: 87 SVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130
Score = 91.9 bits (227), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/234 (11%), Positives = 60/234 (25%), Gaps = 33/234 (14%)
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFS-GVMIRGSGAAWDLRKSQPYECYSELDFD--- 246
+ ++ N +G + ++ G + L + + Y +
Sbjct: 348 FVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNA 407
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ +G Y ESV + + +L + + + A K
Sbjct: 408 MEVGPLARTLIAYHKGDAATVESVDRMMSAL-KLPLSGIQSTLGRILCRAHEAQWAAGKL 466
Query: 307 S--MESLIHHFK----------LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYR 354
+ L+ + K + EAP+G G + K
Sbjct: 467 QYFFDKLMTNLKNGNLATASTEKWEPATWPTESRGVGFTEAPRGALGHWAAIR-DGKIDL 525
Query: 355 CKIRAPGYAH---------LQAMEFLCKGHQLA------DVSAILGSLDIVFGE 393
+ P + + A E ++A ++ L S D
Sbjct: 526 YQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLAC 579
>gi|238921265|ref|YP_002934780.1| hydrogenase 1 large subunit [Edwardsiella ictaluri 93-146]
gi|238870834|gb|ACR70545.1| hydrogenase-1 large chain (HYD1) [Edwardsiella ictaluri 93-146]
Length = 597
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 20/104 (19%), Positives = 42/104 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + ++ + + G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNINDQNIITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
A+E +GI++P +IR + HL++ A
Sbjct: 87 SVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130
Score = 89.2 bits (220), Expect = 1e-15, Method: Composition-based stats.
Identities = 15/93 (16%), Positives = 25/93 (26%), Gaps = 16/93 (17%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQ 366
+ + EAP+G G + K + P + +
Sbjct: 488 EKWEPATWPQHCRGIGFTEAPRGALGHWASIR-DQKIDLYQCVVPTTWNASPRDPKGQIG 546
Query: 367 AMEFLCKGHQLA------DVSAILGSLDIVFGE 393
A E G Q+A ++ L S D
Sbjct: 547 AYEAALMGTQMAIPDQPLEILRTLHSFDPCLAC 579
>gi|113970159|ref|YP_733952.1| nickel-dependent hydrogenase, large subunit [Shewanella sp. MR-4]
gi|113884843|gb|ABI38895.1| nickel-dependent hydrogenase, large subunit [Shewanella sp. MR-4]
Length = 567
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 43/358 (12%), Positives = 72/358 (20%), Gaps = 90/358 (25%)
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
AL+ L E + G + H GGV + W
Sbjct: 189 ALSHYLKALEVQRVAAEMLAIFGGKQPHPQSLVVGGVTSVRDMLSPARLQEWKQKHAIVA 248
Query: 185 NDISDLLTGNRIFKQRNVNI------------------------------GTVKLEDAWG 214
+ I + + G + D G
Sbjct: 249 DFILRAYQADIVMAAEAFGGEASVLGGVNVKNFMATNDFVLANGEYLFDQGVIMKGDLAG 308
Query: 215 WGFSGVMIRGSGAAWDLRKSQ-PYECYSELDFDIPIGKH----------------GDCYD 257
+ + + P Y G +
Sbjct: 309 VSDINPELIAEDVSHAWYSADAPQHPYDGTTIPNYTGFVERDTVYGKLPTLDGDGKYSWV 368
Query: 258 RYLVRMMEMRESVKIIRQCVNRLLGKNKV----------------------GPVSASDPK 295
+ E E + V+ G V G +A +
Sbjct: 369 KSPRYQGEPVEVGPLSCLLVSYARGNKVVVDAVNALLARTGLPVEALFTTLGRTAARMLQ 428
Query: 296 IVPPKRADMKRSMESLIHHFKLYTEGYHV---PVGEVYA--AVEAPKGEFGVYLISDGGN 350
V + +K L + T P E +EAP+G ++
Sbjct: 429 TVIVAQEGLKTFDALLTNIQSDETTYVKPHIDPSREYVGHAMIEAPRGMLSHWIRIK-NG 487
Query: 351 KPYRCKIRAPGYAH---------LQAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
+ P + + E G +L D V I+ S D
Sbjct: 488 VIENYQAVVPTTWNAGPVDANGKIGPYEASLIGLKLEDPTKPLEVIRIIHSFDPCMAC 545
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 42/101 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E+D V L RG E +++ +T + R+ V +
Sbjct: 13 IEGHLRIEVEVDENNVINKAWSSSTLWRGIEVILKGRTPMDVGLIVQRICGVCTYSHYRC 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI+IP+ + +R L + H+++
Sbjct: 73 GTEAVENALGIQIPLNAKYLRSLMQTSLYMHDHIVHFYHLH 113
>gi|312891345|ref|ZP_07750862.1| nickel-dependent hydrogenase large subunit [Mucilaginibacter
paludis DSM 18603]
gi|311296039|gb|EFQ73191.1| nickel-dependent hydrogenase large subunit [Mucilaginibacter
paludis DSM 18603]
Length = 574
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 42/382 (10%), Positives = 84/382 (21%), Gaps = 101/382 (26%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H +++ L L E +++++ + G H Y G ++
Sbjct: 174 HPAYKLPAEVNLIGLAHYLEALEWQKEIVKVHAIFGGKNPHPNYLVGGMACAINLNDVSG 233
Query: 172 DIGCWCDSFPSALND---------ISDLLTGNRIFKQRNVNIGTV-------------KL 209
L D I DL+T +K + G +
Sbjct: 234 INAERLAYVGQLLKDGKEFIEQVYIPDLMTIASFYKDWSKIGGGLGNFLVYGDLPTNGYR 293
Query: 210 EDAWGWGFSGVMIRGS-------------------GAAWDLRKSQPYECYSELDFDIPIG 250
+ + G ++ +W + + + +
Sbjct: 294 DLSSYKFPGGAILNKDLSKIYEVDLKKDDEVQEFITHSWYEYEEGNDKGLHPWKGESKVK 353
Query: 251 KHG-------------DCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIV 297
G Y + E + R V G+ V K +
Sbjct: 354 YTGPKPPFSHLNTDEKYSYIKTPRWKGNAMEVGPLARVLVGYARGREDFKEVVDKALKDL 413
Query: 298 PPKRADMKRSM---------------------ESLIHHFK----------LYTEGYHVPV 326
+ ++ + LI + K +
Sbjct: 414 DLPITALFSTLGRTAARGLECILTAQWGLDFYDQLIANIKNGDTRMADMSKFDPATWPKS 473
Query: 327 GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQL 377
EAP+G ++ K ++ P + A E +
Sbjct: 474 AFGVGHTEAPRGALAHWINI-QDQKIANYQLVVPTTWNASPRDNKGQKSAYEAALINTPV 532
Query: 378 AD------VSAILGSLDIVFGE 393
AD + L S D
Sbjct: 533 ADETQPLEILRTLHSFDPCMAC 554
Score = 98.1 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 25/195 (12%), Positives = 54/195 (27%), Gaps = 31/195 (15%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +++ + G + R E+++ + A + R+ V
Sbjct: 13 IEGHLRIEADIENGKITDA-YSSGTMVRLLEEILRGRDPRDAWAFVGRVCGVCTSIHSLT 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV---------------- 123
VE L I IP +++R + + H+++
Sbjct: 72 SVRCVEDALDITIPANAEMVRNIMFCTSYMHDHVVHFYHLHAMDWVDVLNALKADPKKTS 131
Query: 124 --------------GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL 169
G + ++ ++G H AY P V+
Sbjct: 132 ELAQSISKWPKSSPGYFSDIQTRIKKFVNSGQLGIFSNGYWGHPAYKLPAEVNLIGLAHY 191
Query: 170 VEDIGCWCDSFPSAL 184
+E + +
Sbjct: 192 LEALEWQKEIVKVHA 206
>gi|82776263|ref|YP_402612.1| hydrogenase 1 large subunit [Shigella dysenteriae Sd197]
gi|309786710|ref|ZP_07681330.1| uptake hydrogenase large subunit [Shigella dysenteriae 1617]
gi|81240411|gb|ABB61121.1| hydrogenase-1 large subunit [Shigella dysenteriae Sd197]
gi|308925403|gb|EFP70890.1| uptake hydrogenase large subunit [Shigella dysenteriae 1617]
Length = 568
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 31/232 (13%), Positives = 66/232 (28%), Gaps = 36/232 (15%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + ++ + V G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV---------------- 123
A+E +GI++P +IR + HL++ A
Sbjct: 87 SVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTS 146
Query: 124 --------------GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL 169
G ++ + + +G H Y P +
Sbjct: 147 ELAQSFSSWPKSSPGYFFDVQNRLKKFVEGGQWGIFRNGYWGHPQYKLPPEANLMGFAHY 206
Query: 170 VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVM 221
+E + + + G + + G + G G +
Sbjct: 207 LEALDFQREIVKIHA------VFGGKNPHPNWIVGGMPCAINIDESGAVGAV 252
Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 7/52 (13%), Positives = 13/52 (25%), Gaps = 1/52 (1%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
+ + EAP+G G + K + P +
Sbjct: 488 EKWEPTTWPTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCLVPTTWNASP 538
>gi|308050851|ref|YP_003914417.1| nickel-dependent hydrogenase large subunit [Ferrimonas balearica
DSM 9799]
gi|307633041|gb|ADN77343.1| nickel-dependent hydrogenase large subunit [Ferrimonas balearica
DSM 9799]
Length = 567
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 41/359 (11%), Positives = 79/359 (22%), Gaps = 90/359 (25%)
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A+ L E + G + H GGV + W
Sbjct: 189 AVAHYLKALEVQRVAAEMLAIFGGKQPHPQSLVVGGVTSVRDMLSPARLQEWKTKHAQVH 248
Query: 185 NDISDLLTGNRIFK------------------------------QRNVNIGTVKLEDAWG 214
+ I + + + G + D
Sbjct: 249 DFIVRAYLPDVLMAAAAYKAEPSVLGGVGVTNFLACQDFALGNGRYLFQGGVIMNGDLAN 308
Query: 215 WGFSGVMIRGSGAAWDLRKS----QPYECYSELDFDIPI-------------GKHGDCYD 257
+ + PY+ +E ++ G +
Sbjct: 309 VSDIDPQLIKEDVTHAWYQDGPALHPYDGVTEPNYTGFTKRDTVYGELPTVDGDGKYTWV 368
Query: 258 RYLVRMMEMRESVKIIRQCVNRLLGKNKVG-------------------PVSASDPKIV- 297
+ E E + VN G KV + + ++V
Sbjct: 369 KSPRYNGEPVEVGPLACLLVNYGRGNPKVVAAVDGLLEMTGLPVEALFTTLGRTAARLVQ 428
Query: 298 -PPKRADMKRSMESLIH----HFKLYTEGYHVPVGEVYA--AVEAPKGEFGVYLISDGGN 350
+ ++L+ + E P E +EAP+G ++ G
Sbjct: 429 TLLVCDAALETFDALVQNIQVDESTFREPVMDPNQEYVGHAMIEAPRGMLSHWVRIKG-G 487
Query: 351 KPYRCKIRAPGYAH---------LQAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
K + P + + E G +L D + ++ S D
Sbjct: 488 KVENYQAVVPTTWNSGPKDAEGKIGPYESALIGMKLEDPSKPLEIIRVIHSFDPCMACA 546
Score = 101 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 42/102 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E+D V L RG E +++ +T + A R+ V +
Sbjct: 13 IEGHLRVEVEVDENNVITKAWSSSTLWRGIEVIMKGRTPMDAGLLVQRICGVCTYSHYRC 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LG++IP + +R L + HL++
Sbjct: 73 GTEAVENALGLKIPANAEYLRSLMQSSLYMHDHLVHFYHLHA 114
>gi|26246999|ref|NP_753039.1| hydrogenase 1 large subunit [Escherichia coli CFT073]
gi|227884068|ref|ZP_04001873.1| hydrogenase 1 large subunit [Escherichia coli 83972]
gi|300978260|ref|ZP_07174208.1| nickel-dependent hydrogenase [Escherichia coli MS 45-1]
gi|301047766|ref|ZP_07194822.1| nickel-dependent hydrogenase [Escherichia coli MS 185-1]
gi|26107399|gb|AAN79582.1|AE016758_186 Hydrogenase-1 large chain [Escherichia coli CFT073]
gi|227838820|gb|EEJ49286.1| hydrogenase 1 large subunit [Escherichia coli 83972]
gi|300300375|gb|EFJ56760.1| nickel-dependent hydrogenase [Escherichia coli MS 185-1]
gi|300409725|gb|EFJ93263.1| nickel-dependent hydrogenase [Escherichia coli MS 45-1]
gi|307552804|gb|ADN45579.1| hydrogenase-1 large chain [Escherichia coli ABU 83972]
gi|315291174|gb|EFU50534.1| nickel-dependent hydrogenase [Escherichia coli MS 153-1]
Length = 597
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 42/104 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + ++ + V G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
A+E +GI++P +IR + HL++ A
Sbjct: 87 SVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130
Score = 91.2 bits (225), Expect = 3e-16, Method: Composition-based stats.
Identities = 28/234 (11%), Positives = 60/234 (25%), Gaps = 33/234 (14%)
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFS-GVMIRGSGAAWDLRKSQPYECYSELDFD--- 246
+ ++ N +G + ++ G + L + + Y +
Sbjct: 348 FVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNA 407
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ +G Y ESV + + +L + + + A K
Sbjct: 408 MEVGPLARTLIAYHKGDAATVESVDRMMSAL-KLPLSGIQSTLGRILCRAYEAQWAAGKL 466
Query: 307 S--MESLIHHFK----------LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYR 354
+ L+ + K + EAP+G G + K
Sbjct: 467 QYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIR-DGKIDL 525
Query: 355 CKIRAPGYAH---------LQAMEFLCKGHQLA------DVSAILGSLDIVFGE 393
+ P + + A E ++A ++ L S D
Sbjct: 526 YQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLAC 579
>gi|269140343|ref|YP_003297044.1| hydrogenase 1 large subunit [Edwardsiella tarda EIB202]
gi|267986004|gb|ACY85833.1| hydrogenase 1 large subunit [Edwardsiella tarda EIB202]
gi|304560168|gb|ADM42832.1| Uptake hydrogenase large subunit [Edwardsiella tarda FL6-60]
Length = 597
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 20/104 (19%), Positives = 42/104 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + ++ + + G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNINDQNIITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
A+E +GI++P +IR + HL++ A
Sbjct: 87 SVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130
Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 15/93 (16%), Positives = 25/93 (26%), Gaps = 16/93 (17%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQ 366
+ + EAP+G G + K + P + +
Sbjct: 488 EKWEPATWPQHCRGIGFTEAPRGALGHWASIR-DQKIDLYQCVVPTTWNASPRDPKGQIG 546
Query: 367 AMEFLCKGHQLA------DVSAILGSLDIVFGE 393
A E G Q+A ++ L S D
Sbjct: 547 AYEAALMGTQMAIPDQPLEILRTLHSFDPCLAC 579
>gi|91210070|ref|YP_540056.1| hydrogenase 1 large subunit [Escherichia coli UTI89]
gi|117623182|ref|YP_852095.1| hydrogenase 1 large subunit [Escherichia coli APEC O1]
gi|218557871|ref|YP_002390784.1| hydrogenase 1 large subunit [Escherichia coli S88]
gi|218688869|ref|YP_002397081.1| hydrogenase 1 large subunit [Escherichia coli ED1a]
gi|237707042|ref|ZP_04537523.1| hydrogenase-1 large subunit [Escherichia sp. 3_2_53FAA]
gi|91071644|gb|ABE06525.1| hydrogenase-1 large subunit [Escherichia coli UTI89]
gi|115512306|gb|ABJ00381.1| hydrogenase-1 large subunit [Escherichia coli APEC O1]
gi|218364640|emb|CAR02326.1| hydrogenase 1, large subunit [Escherichia coli S88]
gi|218426433|emb|CAR07259.1| hydrogenase 1, large subunit [Escherichia coli ED1a]
gi|226898252|gb|EEH84511.1| hydrogenase-1 large subunit [Escherichia sp. 3_2_53FAA]
gi|294489841|gb|ADE88597.1| nickel-dependent hydrogenase, large subunit [Escherichia coli
IHE3034]
gi|307627608|gb|ADN71912.1| hydrogenase 1 large subunit [Escherichia coli UM146]
gi|315287582|gb|EFU46988.1| nickel-dependent hydrogenase [Escherichia coli MS 110-3]
gi|320196538|gb|EFW71161.1| Uptake hydrogenase large subunit [Escherichia coli WV_060327]
gi|323190630|gb|EFZ75900.1| uptake hydrogenase large subunit [Escherichia coli RN587/1]
gi|323953325|gb|EGB49191.1| nickel-dependent hydrogenase [Escherichia coli H252]
gi|323958272|gb|EGB53981.1| nickel-dependent hydrogenase [Escherichia coli H263]
gi|324009904|gb|EGB79123.1| nickel-dependent hydrogenase [Escherichia coli MS 57-2]
Length = 597
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 42/104 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + ++ + V G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
A+E +GI++P +IR + HL++ A
Sbjct: 87 SVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130
Score = 91.2 bits (225), Expect = 3e-16, Method: Composition-based stats.
Identities = 28/234 (11%), Positives = 60/234 (25%), Gaps = 33/234 (14%)
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFS-GVMIRGSGAAWDLRKSQPYECYSELDFD--- 246
+ ++ N +G + ++ G + L + + Y +
Sbjct: 348 FVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNA 407
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ +G Y ESV + + +L + + + A K
Sbjct: 408 MEVGPLARTLIAYHKGDAATVESVDRMMSAL-KLPLSGIQSTLGRILCRAHEAQWAAGKL 466
Query: 307 S--MESLIHHFK----------LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYR 354
+ L+ + K + EAP+G G + K
Sbjct: 467 QYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIR-DGKIDL 525
Query: 355 CKIRAPGYAH---------LQAMEFLCKGHQLA------DVSAILGSLDIVFGE 393
+ P + + A E ++A ++ L S D
Sbjct: 526 YQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLAC 579
>gi|15800894|ref|NP_286910.1| hydrogenase 1 large subunit [Escherichia coli O157:H7 EDL933]
gi|15830383|ref|NP_309156.1| hydrogenase 1 large subunit [Escherichia coli O157:H7 str. Sakai]
gi|168747413|ref|ZP_02772435.1| nickel-dependent hydrogenase 1, large subunit [Escherichia coli
O157:H7 str. EC4113]
gi|168754293|ref|ZP_02779300.1| nickel-dependent hydrogenase 1, large subunit [Escherichia coli
O157:H7 str. EC4401]
gi|168763209|ref|ZP_02788216.1| nickel-dependent hydrogenase 1, large subunit [Escherichia coli
O157:H7 str. EC4501]
gi|168767470|ref|ZP_02792477.1| nickel-dependent hydrogenase 1, large subunit [Escherichia coli
O157:H7 str. EC4486]
gi|168777072|ref|ZP_02802079.1| nickel-dependent hydrogenase 1, large subunit [Escherichia coli
O157:H7 str. EC4196]
gi|168780989|ref|ZP_02805996.1| nickel-dependent hydrogenase 1, large subunit [Escherichia coli
O157:H7 str. EC4076]
gi|168787477|ref|ZP_02812484.1| nickel-dependent hydrogenase 1, large subunit [Escherichia coli
O157:H7 str. EC869]
gi|168800602|ref|ZP_02825609.1| nickel-dependent hydrogenase 1, large subunit [Escherichia coli
O157:H7 str. EC508]
gi|195935230|ref|ZP_03080612.1| hydrogenase 1 large subunit [Escherichia coli O157:H7 str. EC4024]
gi|208815570|ref|ZP_03256749.1| nickel-dependent hydrogenase 1, large subunit [Escherichia coli
O157:H7 str. EC4045]
gi|208822776|ref|ZP_03263095.1| nickel-dependent hydrogenase 1, large subunit [Escherichia coli
O157:H7 str. EC4042]
gi|209400020|ref|YP_002269699.1| nickel-dependent hydrogenase 1, large subunit [Escherichia coli
O157:H7 str. EC4115]
gi|217325028|ref|ZP_03441112.1| nickel-dependent hydrogenase 1, large subunit [Escherichia coli
O157:H7 str. TW14588]
gi|254792229|ref|YP_003077066.1| hydrogenase 1 large subunit [Escherichia coli O157:H7 str. TW14359]
gi|261227175|ref|ZP_05941456.1| hydrogenase 1, large subunit [Escherichia coli O157:H7 str.
FRIK2000]
gi|261255711|ref|ZP_05948244.1| hydrogenase 1, large subunit [Escherichia coli O157:H7 str.
FRIK966]
gi|291281972|ref|YP_003498790.1| Hydrogenase-1 large subunit [Escherichia coli O55:H7 str. CB9615]
gi|331651997|ref|ZP_08353016.1| hydrogenase-1 large chain (NiFe hydrogenase) (Membrane-bound
hydrogenase 1 large subunit) (HYD1) [Escherichia coli
M718]
gi|331672508|ref|ZP_08373297.1| hydrogenase-1 large chain (NiFe hydrogenase) (Membrane-bound
hydrogenase 1 large subunit) (HYD1) [Escherichia coli
TA280]
gi|12514235|gb|AAG55521.1|AE005291_6 hydrogenase-1 large subunit [Escherichia coli O157:H7 str. EDL933]
gi|13360589|dbj|BAB34552.1| hydrogenase-1 large subunit [Escherichia coli O157:H7 str. Sakai]
gi|187767639|gb|EDU31483.1| nickel-dependent hydrogenase 1, large subunit [Escherichia coli
O157:H7 str. EC4196]
gi|188017995|gb|EDU56117.1| nickel-dependent hydrogenase 1, large subunit [Escherichia coli
O157:H7 str. EC4113]
gi|189001302|gb|EDU70288.1| nickel-dependent hydrogenase 1, large subunit [Escherichia coli
O157:H7 str. EC4076]
gi|189358156|gb|EDU76575.1| nickel-dependent hydrogenase 1, large subunit [Escherichia coli
O157:H7 str. EC4401]
gi|189363300|gb|EDU81719.1| nickel-dependent hydrogenase 1, large subunit [Escherichia coli
O157:H7 str. EC4486]
gi|189366619|gb|EDU85035.1| nickel-dependent hydrogenase 1, large subunit [Escherichia coli
O157:H7 str. EC4501]
gi|189372747|gb|EDU91163.1| nickel-dependent hydrogenase 1, large subunit [Escherichia coli
O157:H7 str. EC869]
gi|189377131|gb|EDU95547.1| nickel-dependent hydrogenase 1, large subunit [Escherichia coli
O157:H7 str. EC508]
gi|208732218|gb|EDZ80906.1| nickel-dependent hydrogenase 1, large subunit [Escherichia coli
O157:H7 str. EC4045]
gi|208738261|gb|EDZ85944.1| nickel-dependent hydrogenase 1, large subunit [Escherichia coli
O157:H7 str. EC4042]
gi|209161420|gb|ACI38853.1| nickel-dependent hydrogenase 1, large subunit [Escherichia coli
O157:H7 str. EC4115]
gi|209774288|gb|ACI85456.1| hydrogenase-1 large subunit [Escherichia coli]
gi|209774290|gb|ACI85457.1| hydrogenase-1 large subunit [Escherichia coli]
gi|209774292|gb|ACI85458.1| hydrogenase-1 large subunit [Escherichia coli]
gi|209774294|gb|ACI85459.1| hydrogenase-1 large subunit [Escherichia coli]
gi|209774296|gb|ACI85460.1| hydrogenase-1 large subunit [Escherichia coli]
gi|217321249|gb|EEC29673.1| nickel-dependent hydrogenase 1, large subunit [Escherichia coli
O157:H7 str. TW14588]
gi|254591629|gb|ACT70990.1| hydrogenase 1, large subunit [Escherichia coli O157:H7 str.
TW14359]
gi|290761845|gb|ADD55806.1| Hydrogenase-1 large subunit [Escherichia coli O55:H7 str. CB9615]
gi|320192529|gb|EFW67171.1| Uptake hydrogenase large subunit [Escherichia coli O157:H7 str.
EC1212]
gi|320637840|gb|EFX07632.1| hydrogenase 1 large subunit [Escherichia coli O157:H7 str. G5101]
gi|320642965|gb|EFX12166.1| hydrogenase 1 large subunit [Escherichia coli O157:H- str. 493-89]
gi|320648422|gb|EFX17077.1| hydrogenase 1 large subunit [Escherichia coli O157:H- str. H 2687]
gi|320653738|gb|EFX21812.1| hydrogenase 1 large subunit [Escherichia coli O55:H7 str. 3256-97
TW 07815]
gi|320659581|gb|EFX27144.1| hydrogenase 1 large subunit [Escherichia coli O55:H7 str. USDA
5905]
gi|320664352|gb|EFX31503.1| hydrogenase 1 large subunit [Escherichia coli O157:H7 str. LSU-61]
gi|326338584|gb|EGD62411.1| Uptake hydrogenase large subunit [Escherichia coli O157:H7 str.
1125]
gi|326347775|gb|EGD71491.1| Uptake hydrogenase large subunit [Escherichia coli O157:H7 str.
1044]
gi|331050275|gb|EGI22333.1| hydrogenase-1 large chain (NiFe hydrogenase) (Membrane-bound
hydrogenase 1 large subunit) (HYD1) [Escherichia coli
M718]
gi|331070151|gb|EGI41517.1| hydrogenase-1 large chain (NiFe hydrogenase) (Membrane-bound
hydrogenase 1 large subunit) (HYD1) [Escherichia coli
TA280]
Length = 597
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 42/104 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + ++ + V G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
A+E +GI++P +IR + HL++ A
Sbjct: 87 SVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130
Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 13/93 (13%), Positives = 24/93 (25%), Gaps = 16/93 (17%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQ 366
+ + EAP+G G + K + P + +
Sbjct: 488 EKWEPTTWPTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVPTTWNASPRDPKGQIG 546
Query: 367 AMEFLCKGHQLA------DVSAILGSLDIVFGE 393
A E ++A ++ L S D
Sbjct: 547 AYEAALMNTKMAIPEQPLEILRTLHSFDPCLAC 579
>gi|331646234|ref|ZP_08347337.1| hydrogenase-1 large chain (NiFe hydrogenase) (Membrane-bound
hydrogenase 1 large subunit) (HYD1) [Escherichia coli
M605]
gi|281178097|dbj|BAI54427.1| hydrogenase-1 large subunit [Escherichia coli SE15]
gi|330910747|gb|EGH39257.1| uptake hydrogenase large subunit [Escherichia coli AA86]
gi|331044986|gb|EGI17113.1| hydrogenase-1 large chain (NiFe hydrogenase) (Membrane-bound
hydrogenase 1 large subunit) (HYD1) [Escherichia coli
M605]
Length = 597
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 42/104 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + ++ + V G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
A+E +GI++P +IR + HL++ A
Sbjct: 87 SVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130
Score = 90.8 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 13/93 (13%), Positives = 24/93 (25%), Gaps = 16/93 (17%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQ 366
+ + EAP+G G + K + P + +
Sbjct: 488 EKWEPATWPTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVPTTWNASPRDPKGQIG 546
Query: 367 AMEFLCKGHQLA------DVSAILGSLDIVFGE 393
A E ++A ++ L S D
Sbjct: 547 AYEAALMNTKMAIPEQPLEILRTLHSFDPCLAC 579
>gi|333008957|gb|EGK28417.1| uptake hydrogenase large subunit [Shigella flexneri K-272]
gi|333020269|gb|EGK39539.1| uptake hydrogenase large subunit [Shigella flexneri K-227]
Length = 597
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 42/104 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + ++ + V G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
A+E +GI++P +IR + HL++ A
Sbjct: 87 SVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130
Score = 90.8 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 13/93 (13%), Positives = 24/93 (25%), Gaps = 16/93 (17%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQ 366
+ + EAP+G G + K + P + +
Sbjct: 488 EKWEPATWPTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVPTTWNASPRDPKGQIG 546
Query: 367 AMEFLCKGHQLA------DVSAILGSLDIVFGE 393
A E ++A ++ L S D
Sbjct: 547 AYEAALMNTKMAIPEQPLEILRTLHSFDPCLAC 579
>gi|293414252|ref|ZP_06656901.1| hydrogenase large subunit [Escherichia coli B185]
gi|291434310|gb|EFF07283.1| hydrogenase large subunit [Escherichia coli B185]
Length = 597
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 42/104 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + ++ + V G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
A+E +GI++P +IR + HL++ A
Sbjct: 87 SVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130
Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 13/93 (13%), Positives = 24/93 (25%), Gaps = 16/93 (17%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQ 366
+ + EAP+G G + K + P + +
Sbjct: 488 EKWEPTTWPTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVPTTWNASPRDPKGQIG 546
Query: 367 AMEFLCKGHQLA------DVSAILGSLDIVFGE 393
A E ++A ++ L S D
Sbjct: 547 AYEAALMNTKMAIPEQPLEILRTLHSFDPCLAC 579
>gi|187731287|ref|YP_001880829.1| hydrogenase 1 large subunit [Shigella boydii CDC 3083-94]
gi|187428279|gb|ACD07553.1| nickel-dependent hydrogenase 1, large subunit [Shigella boydii CDC
3083-94]
Length = 597
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 42/104 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + ++ + V G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
A+E +GI++P +IR + HL++ A
Sbjct: 87 SVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130
Score = 90.8 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 13/93 (13%), Positives = 24/93 (25%), Gaps = 16/93 (17%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQ 366
+ + EAP+G G + K + P + +
Sbjct: 488 EKWEPATWPTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVPTTWNASPRDPKGQIG 546
Query: 367 AMEFLCKGHQLA------DVSAILGSLDIVFGE 393
A E ++A ++ L S D
Sbjct: 547 AYEAALMNTKMAIPEQPLEILRTLHSFDPCLAC 579
>gi|320178585|gb|EFW53550.1| Uptake hydrogenase large subunit [Shigella boydii ATCC 9905]
Length = 597
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 42/104 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + ++ + V G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
A+E +GI++P +IR + HL++ A
Sbjct: 87 SVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130
Score = 86.2 bits (212), Expect = 9e-15, Method: Composition-based stats.
Identities = 13/93 (13%), Positives = 24/93 (25%), Gaps = 16/93 (17%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQ 366
+ + EAP+G G + K + P + +
Sbjct: 488 EKWEPATWPTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVPTTWNASPRDPKGQIG 546
Query: 367 AMEFLCKGHQLA------DVSAILGSLDIVFGE 393
A E ++A ++ L S D
Sbjct: 547 AYEAALMNTKMAIPEQPLEILRTLHSFDSCLAC 579
>gi|301023101|ref|ZP_07186908.1| nickel-dependent hydrogenase [Escherichia coli MS 69-1]
gi|300397222|gb|EFJ80760.1| nickel-dependent hydrogenase [Escherichia coli MS 69-1]
Length = 597
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 42/104 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + ++ + V G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
A+E +GI++P +IR + HL++ A
Sbjct: 87 SVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130
Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/234 (11%), Positives = 60/234 (25%), Gaps = 33/234 (14%)
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFS-GVMIRGSGAAWDLRKSQPYECYSELDFD--- 246
+ ++ N +G + ++ G + L + + Y +
Sbjct: 348 FVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNA 407
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ +G Y ESV + + +L + + + A K
Sbjct: 408 MEVGPLARTLIAYHKGDAATVESVDRMMSAL-KLPLSGIQSTLGRILCRAHEAQWAAGKL 466
Query: 307 S--MESLIHHFK----------LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYR 354
+ L+ + K + EAP+G G + K
Sbjct: 467 QYFFDKLMTNLKNGNLATASTEKWEPTTWPTECRGVGFTEAPRGALGHWAAIR-DGKIDL 525
Query: 355 CKIRAPGYAH---------LQAMEFLCKGHQLA------DVSAILGSLDIVFGE 393
+ P + + A E ++A ++ L S D
Sbjct: 526 YQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLAC 579
>gi|218704397|ref|YP_002411916.1| hydrogenase 1 large subunit [Escherichia coli UMN026]
gi|293404273|ref|ZP_06648267.1| hydrogenase 1 large subunit [Escherichia coli FVEC1412]
gi|298380056|ref|ZP_06989661.1| hydrogenase 1 large subunit [Escherichia coli FVEC1302]
gi|300896353|ref|ZP_07114895.1| nickel-dependent hydrogenase [Escherichia coli MS 198-1]
gi|218431494|emb|CAR12372.1| hydrogenase 1, large subunit [Escherichia coli UMN026]
gi|284920817|emb|CBG33880.1| hydrogenase-1 large subunit [Escherichia coli 042]
gi|291428859|gb|EFF01884.1| hydrogenase 1 large subunit [Escherichia coli FVEC1412]
gi|298279754|gb|EFI21262.1| hydrogenase 1 large subunit [Escherichia coli FVEC1302]
gi|300359764|gb|EFJ75634.1| nickel-dependent hydrogenase [Escherichia coli MS 198-1]
Length = 597
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 42/104 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + ++ + V G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
A+E +GI++P +IR + HL++ A
Sbjct: 87 SVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130
Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 13/93 (13%), Positives = 24/93 (25%), Gaps = 16/93 (17%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQ 366
+ + EAP+G G + K + P + +
Sbjct: 488 EKWEPTTWPTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVPTTWNASPRDPKGQIG 546
Query: 367 AMEFLCKGHQLA------DVSAILGSLDIVFGE 393
A E ++A ++ L S D
Sbjct: 547 AYEAALMNTKMAIPEQPLEILRTLHSFDPCLAC 579
>gi|218548483|ref|YP_002382274.1| hydrogenase 1 large subunit [Escherichia fergusonii ATCC 35469]
gi|218356024|emb|CAQ88640.1| hydrogenase 1, large subunit [Escherichia fergusonii ATCC 35469]
Length = 597
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 42/104 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + ++ + V G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
A+E +GI++P +IR + HL++ A
Sbjct: 87 SVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130
Score = 90.8 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 13/93 (13%), Positives = 24/93 (25%), Gaps = 16/93 (17%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQ 366
+ + EAP+G G + K + P + +
Sbjct: 488 EKWEPATWPTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVPTTWNASPRDPKGQIG 546
Query: 367 AMEFLCKGHQLA------DVSAILGSLDIVFGE 393
A E ++A ++ L S D
Sbjct: 547 AYEAALMNTKMAIPEQPLEILRTLHSFDPCLAC 579
>gi|74311530|ref|YP_309949.1| hydrogenase 1 large subunit [Shigella sonnei Ss046]
gi|193066331|ref|ZP_03047381.1| nickel-dependent hydrogenase 1, large subunit [Escherichia coli
E22]
gi|194429841|ref|ZP_03062354.1| nickel-dependent hydrogenase 1, large subunit [Escherichia coli
B171]
gi|260843221|ref|YP_003220999.1| hydrogenase 1, large subunit [Escherichia coli O103:H2 str. 12009]
gi|73855007|gb|AAZ87714.1| hydrogenase-1 large subunit [Shigella sonnei Ss046]
gi|192926038|gb|EDV80682.1| nickel-dependent hydrogenase 1, large subunit [Escherichia coli
E22]
gi|194412123|gb|EDX28432.1| nickel-dependent hydrogenase 1, large subunit [Escherichia coli
B171]
gi|257758368|dbj|BAI29865.1| hydrogenase 1, large subunit [Escherichia coli O103:H2 str. 12009]
gi|323158197|gb|EFZ44290.1| uptake hydrogenase large subunit [Escherichia coli E128010]
gi|323165457|gb|EFZ51244.1| uptake hydrogenase large subunit [Shigella sonnei 53G]
Length = 597
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 42/104 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + ++ + V G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
A+E +GI++P +IR + HL++ A
Sbjct: 87 SVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130
Score = 90.8 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 13/93 (13%), Positives = 24/93 (25%), Gaps = 16/93 (17%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQ 366
+ + EAP+G G + K + P + +
Sbjct: 488 EKWEPATWPTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVPTTWNASPRDPKGQIG 546
Query: 367 AMEFLCKGHQLA------DVSAILGSLDIVFGE 393
A E ++A ++ L S D
Sbjct: 547 AYEAALMNTKMAIPEQPLEILRTLHSFDPCLAC 579
>gi|114563275|ref|YP_750788.1| nickel-dependent hydrogenase, large subunit [Shewanella
frigidimarina NCIMB 400]
gi|114334568|gb|ABI71950.1| nickel-dependent hydrogenase, large subunit [Shewanella
frigidimarina NCIMB 400]
Length = 567
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 43/358 (12%), Positives = 75/358 (20%), Gaps = 90/358 (25%)
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
AL+ L E + G H GGV + W
Sbjct: 189 ALSHYLKALEVQRVAAEMLAIFGGKSPHPQSIVVGGVTSVRDMLSPARLQEWKQKHAIVQ 248
Query: 185 NDISDLLTGNRIFKQRNVNI------------------------------GTVKLEDAWG 214
+ I + + G + D
Sbjct: 249 DFIERAYQADIVMAAEAFGTEASVLGGVNVNSFLCGEDFITTDGEYLFNQGVILNGDLAN 308
Query: 215 WGFSGVMIRGSGAAWDLRK----SQPYECYSELDF-------------DIPIGKHGDCYD 257
+ K PY+ + D+ G +
Sbjct: 309 VLDIDPSLIKEDVTHAWYKADGPQHPYQGTTIPDYTGFIERDTVYGKLPTINGDGKYSWV 368
Query: 258 RYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM--------- 308
+ E E + VN G V + ++
Sbjct: 369 KSPRYQDEPIEVGPLACLLVNYARGNQVVVNAVDGLLARTGLPLEALFTTLGRTAARMLQ 428
Query: 309 ------------ESLIHHFKLYTEGYHVPV------GEVYAAVEAPKGEFGVYLISDGGN 350
++L+ + + Y P E Y+ +EAP+G ++
Sbjct: 429 TVLVGQASLQTFDALLVNIQSDQSTYVKPEIDPDRVYEGYSMIEAPRGMLSHWIRIKDA- 487
Query: 351 KPYRCKIRAPGYAH---------LQAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
K + P + + E G +L D V I+ S D
Sbjct: 488 KVENYQAVVPTTWNAGPVDANGKMGPYEASLIGLKLEDPTKPLEVIRIIHSFDPCMAC 545
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 42/101 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E+D V L RG E +++ +T + R+ V +
Sbjct: 13 IEGHLRVEVEVDDNNVITKAWSSSTLWRGIEVILKGRTPMDVGLIVQRICGVCTYSHYRC 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LG++IP+ + +R + + H+++
Sbjct: 73 GTEAVENALGVKIPLNAKYLRSIMQSSLYMHDHIVHFYHLH 113
>gi|256023326|ref|ZP_05437191.1| hydrogenase 1 large subunit [Escherichia sp. 4_1_40B]
Length = 597
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 42/104 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + ++ + V G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
A+E +GI++P +IR + HL++ A
Sbjct: 87 SVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130
Score = 90.8 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 13/93 (13%), Positives = 24/93 (25%), Gaps = 16/93 (17%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQ 366
+ + EAP+G G + K + P + +
Sbjct: 488 EKWEPATWPTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVPTTWNASPRDPKGQIG 546
Query: 367 AMEFLCKGHQLA------DVSAILGSLDIVFGE 393
A E ++A ++ L S D
Sbjct: 547 AYEAALMNTKMAIPEQPLEILRTLHSFDPCLAC 579
>gi|215486090|ref|YP_002328521.1| hydrogenase 1 large subunit [Escherichia coli O127:H6 str.
E2348/69]
gi|293409352|ref|ZP_06652928.1| hydrogenase-1 large chain [Escherichia coli B354]
gi|312968968|ref|ZP_07783175.1| uptake hydrogenase large subunit [Escherichia coli 2362-75]
gi|331682478|ref|ZP_08383097.1| hydrogenase-1 large chain (NiFe hydrogenase) (Membrane-bound
hydrogenase 1 large subunit) (HYD1) [Escherichia coli
H299]
gi|215264162|emb|CAS08506.1| hydrogenase 1, large subunit [Escherichia coli O127:H6 str.
E2348/69]
gi|291469820|gb|EFF12304.1| hydrogenase-1 large chain [Escherichia coli B354]
gi|312286370|gb|EFR14283.1| uptake hydrogenase large subunit [Escherichia coli 2362-75]
gi|331080109|gb|EGI51288.1| hydrogenase-1 large chain (NiFe hydrogenase) (Membrane-bound
hydrogenase 1 large subunit) (HYD1) [Escherichia coli
H299]
Length = 597
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 42/104 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + ++ + V G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
A+E +GI++P +IR + HL++ A
Sbjct: 87 SVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130
Score = 90.8 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 13/93 (13%), Positives = 24/93 (25%), Gaps = 16/93 (17%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQ 366
+ + EAP+G G + K + P + +
Sbjct: 488 EKWEPATWPTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVPTTWNASPRDPKGQIG 546
Query: 367 AMEFLCKGHQLA------DVSAILGSLDIVFGE 393
A E ++A ++ L S D
Sbjct: 547 AYEAALMNTKMAIPEQPLEILRTLHSFDPCLAC 579
>gi|110641162|ref|YP_668892.1| hydrogenase 1 large subunit [Escherichia coli 536]
gi|191172466|ref|ZP_03034007.1| nickel-dependent hydrogenase 1, large subunit [Escherichia coli
F11]
gi|300982832|ref|ZP_07176315.1| nickel-dependent hydrogenase [Escherichia coli MS 200-1]
gi|331657039|ref|ZP_08358001.1| hydrogenase-1 large chain (NiFe hydrogenase) (Membrane-bound
hydrogenase 1 large subunit) (HYD1) [Escherichia coli
TA206]
gi|110342754|gb|ABG68991.1| hydrogenase-1 large chain [Escherichia coli 536]
gi|190907350|gb|EDV66948.1| nickel-dependent hydrogenase 1, large subunit [Escherichia coli
F11]
gi|300307042|gb|EFJ61562.1| nickel-dependent hydrogenase [Escherichia coli MS 200-1]
gi|315296269|gb|EFU55575.1| nickel-dependent hydrogenase [Escherichia coli MS 16-3]
gi|324012887|gb|EGB82106.1| nickel-dependent hydrogenase [Escherichia coli MS 60-1]
gi|331055287|gb|EGI27296.1| hydrogenase-1 large chain (NiFe hydrogenase) (Membrane-bound
hydrogenase 1 large subunit) (HYD1) [Escherichia coli
TA206]
Length = 597
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 42/104 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + ++ + V G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
A+E +GI++P +IR + HL++ A
Sbjct: 87 SVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130
Score = 90.8 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 28/234 (11%), Positives = 60/234 (25%), Gaps = 33/234 (14%)
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFS-GVMIRGSGAAWDLRKSQPYECYSELDFD--- 246
+ ++ N +G + ++ G + L + + Y +
Sbjct: 348 FVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNA 407
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ +G Y ESV + + +L + + + A K
Sbjct: 408 MEVGPLARTLIAYHKGDAATVESVDRMMSAL-KLPLSGIQSTLGRILCRAHEAQWAAGKL 466
Query: 307 S--MESLIHHFK----------LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYR 354
+ L+ + K + EAP+G G + K
Sbjct: 467 QYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIR-DGKIDL 525
Query: 355 CKIRAPGYAH---------LQAMEFLCKGHQLA------DVSAILGSLDIVFGE 393
+ P + + A E ++A ++ L S D
Sbjct: 526 YQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLAC 579
>gi|323967220|gb|EGB62644.1| nickel-dependent hydrogenase [Escherichia coli M863]
gi|327253371|gb|EGE65009.1| uptake hydrogenase large subunit [Escherichia coli STEC_7v]
Length = 597
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 42/104 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + ++ + V G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
A+E +GI++P +IR + HL++ A
Sbjct: 87 SVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130
Score = 89.6 bits (221), Expect = 8e-16, Method: Composition-based stats.
Identities = 13/93 (13%), Positives = 24/93 (25%), Gaps = 16/93 (17%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQ 366
+ + EAP+G G + K + P + +
Sbjct: 488 EKWEPATWPTECHGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVPTTWNASPRDPKGQIG 546
Query: 367 AMEFLCKGHQLA------DVSAILGSLDIVFGE 393
A E ++A ++ L S D
Sbjct: 547 AYEAALMNTKMAIPEQPLEILRTLHSFDPCLAC 579
>gi|16128939|ref|NP_415492.1| hydrogenase 1, large subunit [Escherichia coli str. K-12 substr.
MG1655]
gi|24112385|ref|NP_706895.1| hydrogenase 1 large subunit [Shigella flexneri 2a str. 301]
gi|30062511|ref|NP_836682.1| hydrogenase 1 large subunit [Shigella flexneri 2a str. 2457T]
gi|82544704|ref|YP_408651.1| hydrogenase 1 large subunit [Shigella boydii Sb227]
gi|89107822|ref|AP_001602.1| hydrogenase 1, large subunit [Escherichia coli str. K-12 substr.
W3110]
gi|110804987|ref|YP_688507.1| hydrogenase 1 large subunit [Shigella flexneri 5 str. 8401]
gi|157158524|ref|YP_001462204.1| hydrogenase 1 large subunit [Escherichia coli E24377A]
gi|157160492|ref|YP_001457810.1| hydrogenase 1 large subunit [Escherichia coli HS]
gi|170080630|ref|YP_001729950.1| hydrogenase 1, large subunit [Escherichia coli str. K-12 substr.
DH10B]
gi|170683907|ref|YP_001744195.1| hydrogenase 1 large subunit [Escherichia coli SMS-3-5]
gi|188492197|ref|ZP_02999467.1| nickel-dependent hydrogenase 1, large subunit [Escherichia coli
53638]
gi|191166572|ref|ZP_03028401.1| nickel-dependent hydrogenase 1, large subunit [Escherichia coli
B7A]
gi|194438050|ref|ZP_03070143.1| nickel-dependent hydrogenase 1, large subunit [Escherichia coli
101-1]
gi|209918226|ref|YP_002292310.1| hydrogenase 1 large subunit [Escherichia coli SE11]
gi|218553560|ref|YP_002386473.1| hydrogenase 1 large subunit [Escherichia coli IAI1]
gi|218694506|ref|YP_002402173.1| hydrogenase 1 large subunit [Escherichia coli 55989]
gi|218700507|ref|YP_002408136.1| hydrogenase 1 large subunit [Escherichia coli IAI39]
gi|238900230|ref|YP_002926026.1| hydrogenase 1, large subunit [Escherichia coli BW2952]
gi|253773998|ref|YP_003036829.1| hydrogenase 1 large subunit [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|254161086|ref|YP_003044194.1| hydrogenase 1 large subunit [Escherichia coli B str. REL606]
gi|256018769|ref|ZP_05432634.1| hydrogenase 1 large subunit [Shigella sp. D9]
gi|260854678|ref|YP_003228569.1| hydrogenase 1, large subunit [Escherichia coli O26:H11 str. 11368]
gi|260867182|ref|YP_003233584.1| hydrogenase 1, large subunit [Escherichia coli O111:H- str. 11128]
gi|293433269|ref|ZP_06661697.1| hydrogenase-1 large chain [Escherichia coli B088]
gi|297518753|ref|ZP_06937139.1| hydrogenase 1 large subunit [Escherichia coli OP50]
gi|300819216|ref|ZP_07099417.1| nickel-dependent hydrogenase [Escherichia coli MS 107-1]
gi|300825223|ref|ZP_07105311.1| nickel-dependent hydrogenase [Escherichia coli MS 119-7]
gi|300920985|ref|ZP_07137374.1| nickel-dependent hydrogenase [Escherichia coli MS 115-1]
gi|300925342|ref|ZP_07141231.1| nickel-dependent hydrogenase [Escherichia coli MS 182-1]
gi|300929675|ref|ZP_07145133.1| nickel-dependent hydrogenase [Escherichia coli MS 187-1]
gi|300937673|ref|ZP_07152479.1| nickel-dependent hydrogenase [Escherichia coli MS 21-1]
gi|300949653|ref|ZP_07163638.1| nickel-dependent hydrogenase [Escherichia coli MS 116-1]
gi|300955369|ref|ZP_07167747.1| nickel-dependent hydrogenase [Escherichia coli MS 175-1]
gi|301022540|ref|ZP_07186413.1| nickel-dependent hydrogenase [Escherichia coli MS 196-1]
gi|301327193|ref|ZP_07220459.1| nickel-dependent hydrogenase [Escherichia coli MS 78-1]
gi|301643498|ref|ZP_07243544.1| nickel-dependent hydrogenase [Escherichia coli MS 146-1]
gi|307137603|ref|ZP_07496959.1| hydrogenase 1 large subunit [Escherichia coli H736]
gi|307311641|ref|ZP_07591281.1| nickel-dependent hydrogenase large subunit [Escherichia coli W]
gi|309795038|ref|ZP_07689458.1| nickel-dependent hydrogenase [Escherichia coli MS 145-7]
gi|312971104|ref|ZP_07785283.1| uptake hydrogenase large subunit [Escherichia coli 1827-70]
gi|331641501|ref|ZP_08342636.1| hydrogenase-1 large chain (NiFe hydrogenase) (Membrane-bound
hydrogenase 1 large subunit) (HYD1) [Escherichia coli
H736]
gi|331667363|ref|ZP_08368227.1| hydrogenase-1 large chain (NiFe hydrogenase) (Membrane-bound
hydrogenase 1 large subunit) (HYD1) [Escherichia coli
TA271]
gi|332279845|ref|ZP_08392258.1| hydrogenase-1 large subunit [Shigella sp. D9]
gi|82593028|sp|P0ACD8|MBHL_ECOLI RecName: Full=Hydrogenase-1 large chain; Short=HYD1; AltName:
Full=Membrane-bound hydrogenase 1 large subunit;
AltName: Full=NiFe hydrogenase
gi|82593029|sp|P0ACD9|MBHL_SHIFL RecName: Full=Hydrogenase-1 large chain; Short=HYD1; AltName:
Full=Membrane-bound hydrogenase 1 large subunit;
AltName: Full=NiFe hydrogenase
gi|1787207|gb|AAC74058.1| hydrogenase 1, large subunit [Escherichia coli str. K-12 substr.
MG1655]
gi|24051256|gb|AAN42602.1| hydrogenase-1 large subunit [Shigella flexneri 2a str. 301]
gi|30040757|gb|AAP16488.1| hydrogenase-1 large subunit [Shigella flexneri 2a str. 2457T]
gi|81246115|gb|ABB66823.1| hydrogenase 1 large subunit [Shigella boydii Sb227]
gi|85674807|dbj|BAA35738.2| hydrogenase 1, large subunit [Escherichia coli str. K12 substr.
W3110]
gi|110614535|gb|ABF03202.1| hydrogenase-1 large subunit [Shigella flexneri 5 str. 8401]
gi|157066172|gb|ABV05427.1| nickel-dependent hydrogenase 1, large subunit [Escherichia coli HS]
gi|157080554|gb|ABV20262.1| nickel-dependent hydrogenase 1, large subunit [Escherichia coli
E24377A]
gi|169888465|gb|ACB02172.1| hydrogenase 1, large subunit [Escherichia coli str. K-12 substr.
DH10B]
gi|170521625|gb|ACB19803.1| nickel-dependent hydrogenase 1, large subunit [Escherichia coli
SMS-3-5]
gi|188487396|gb|EDU62499.1| nickel-dependent hydrogenase 1, large subunit [Escherichia coli
53638]
gi|190903377|gb|EDV63097.1| nickel-dependent hydrogenase 1, large subunit [Escherichia coli
B7A]
gi|194422986|gb|EDX38980.1| nickel-dependent hydrogenase 1, large subunit [Escherichia coli
101-1]
gi|209911485|dbj|BAG76559.1| hydrogenase-1 large subunit [Escherichia coli SE11]
gi|218351238|emb|CAU96942.1| hydrogenase 1, large subunit [Escherichia coli 55989]
gi|218360328|emb|CAQ97878.1| hydrogenase 1, large subunit [Escherichia coli IAI1]
gi|218370493|emb|CAR18300.1| hydrogenase 1, large subunit [Escherichia coli IAI39]
gi|238861447|gb|ACR63445.1| hydrogenase 1, large subunit [Escherichia coli BW2952]
gi|242376787|emb|CAQ31500.1| hydrogenase 1, large subunit, subunit of hydrogenase 1 [Escherichia
coli BL21(DE3)]
gi|253325042|gb|ACT29644.1| nickel-dependent hydrogenase large subunit [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253972987|gb|ACT38658.1| hydrogenase 1, large subunit [Escherichia coli B str. REL606]
gi|253977201|gb|ACT42871.1| hydrogenase 1, large subunit [Escherichia coli BL21(DE3)]
gi|257753327|dbj|BAI24829.1| hydrogenase 1, large subunit [Escherichia coli O26:H11 str. 11368]
gi|257763538|dbj|BAI35033.1| hydrogenase 1, large subunit [Escherichia coli O111:H- str. 11128]
gi|260449882|gb|ACX40304.1| nickel-dependent hydrogenase large subunit [Escherichia coli DH1]
gi|281600337|gb|ADA73321.1| Hydrogenase-1 large chain [Shigella flexneri 2002017]
gi|291324088|gb|EFE63510.1| hydrogenase-1 large chain [Escherichia coli B088]
gi|299881203|gb|EFI89414.1| nickel-dependent hydrogenase [Escherichia coli MS 196-1]
gi|300317725|gb|EFJ67509.1| nickel-dependent hydrogenase [Escherichia coli MS 175-1]
gi|300412064|gb|EFJ95374.1| nickel-dependent hydrogenase [Escherichia coli MS 115-1]
gi|300418534|gb|EFK01845.1| nickel-dependent hydrogenase [Escherichia coli MS 182-1]
gi|300450948|gb|EFK14568.1| nickel-dependent hydrogenase [Escherichia coli MS 116-1]
gi|300457321|gb|EFK20814.1| nickel-dependent hydrogenase [Escherichia coli MS 21-1]
gi|300462376|gb|EFK25869.1| nickel-dependent hydrogenase [Escherichia coli MS 187-1]
gi|300522305|gb|EFK43374.1| nickel-dependent hydrogenase [Escherichia coli MS 119-7]
gi|300528235|gb|EFK49297.1| nickel-dependent hydrogenase [Escherichia coli MS 107-1]
gi|300846226|gb|EFK73986.1| nickel-dependent hydrogenase [Escherichia coli MS 78-1]
gi|301078105|gb|EFK92911.1| nickel-dependent hydrogenase [Escherichia coli MS 146-1]
gi|306908196|gb|EFN38695.1| nickel-dependent hydrogenase large subunit [Escherichia coli W]
gi|308121342|gb|EFO58604.1| nickel-dependent hydrogenase [Escherichia coli MS 145-7]
gi|309701251|emb|CBJ00551.1| NiFeSe-hydrogenase [Escherichia coli ETEC H10407]
gi|310336865|gb|EFQ02032.1| uptake hydrogenase large subunit [Escherichia coli 1827-70]
gi|313650776|gb|EFS15177.1| uptake hydrogenase large subunit [Shigella flexneri 2a str. 2457T]
gi|315060257|gb|ADT74584.1| hydrogenase 1, large subunit [Escherichia coli W]
gi|315135622|dbj|BAJ42781.1| hydrogenase 1 large subunit [Escherichia coli DH1]
gi|315619169|gb|EFU99749.1| uptake hydrogenase large subunit [Escherichia coli 3431]
gi|320187183|gb|EFW61884.1| Uptake hydrogenase large subunit [Shigella flexneri CDC 796-83]
gi|320200202|gb|EFW74790.1| Uptake hydrogenase large subunit [Escherichia coli EC4100B]
gi|323157472|gb|EFZ43582.1| uptake hydrogenase large subunit [Escherichia coli EPECa14]
gi|323174919|gb|EFZ60534.1| uptake hydrogenase large subunit [Escherichia coli LT-68]
gi|323175893|gb|EFZ61487.1| uptake hydrogenase large subunit [Escherichia coli 1180]
gi|323185316|gb|EFZ70680.1| uptake hydrogenase large subunit [Escherichia coli 1357]
gi|323379183|gb|ADX51451.1| nickel-dependent hydrogenase large subunit [Escherichia coli KO11]
gi|323942887|gb|EGB39052.1| nickel-dependent hydrogenase [Escherichia coli E482]
gi|323947238|gb|EGB43246.1| nickel-dependent hydrogenase [Escherichia coli H120]
gi|323962858|gb|EGB58433.1| nickel-dependent hydrogenase [Escherichia coli H489]
gi|323973152|gb|EGB68344.1| nickel-dependent hydrogenase [Escherichia coli TA007]
gi|324019137|gb|EGB88356.1| nickel-dependent hydrogenase [Escherichia coli MS 117-3]
gi|324117164|gb|EGC11072.1| nickel-dependent hydrogenase [Escherichia coli E1167]
gi|331038299|gb|EGI10519.1| hydrogenase-1 large chain (NiFe hydrogenase) (Membrane-bound
hydrogenase 1 large subunit) (HYD1) [Escherichia coli
H736]
gi|331064948|gb|EGI36843.1| hydrogenase-1 large chain (NiFe hydrogenase) (Membrane-bound
hydrogenase 1 large subunit) (HYD1) [Escherichia coli
TA271]
gi|332093369|gb|EGI98427.1| uptake hydrogenase large subunit [Shigella boydii 3594-74]
gi|332102197|gb|EGJ05543.1| hydrogenase-1 large subunit [Shigella sp. D9]
gi|332342416|gb|AEE55750.1| hydrogenase, large subunit HyaB [Escherichia coli UMNK88]
gi|332759069|gb|EGJ89379.1| uptake hydrogenase large subunit [Shigella flexneri 4343-70]
gi|332760024|gb|EGJ90325.1| uptake hydrogenase large subunit [Shigella flexneri 2747-71]
gi|332762757|gb|EGJ93020.1| uptake hydrogenase large subunit [Shigella flexneri K-671]
gi|332767767|gb|EGJ97958.1| uptake hydrogenase large subunit [Shigella flexneri 2930-71]
gi|333006296|gb|EGK25805.1| uptake hydrogenase large subunit [Shigella flexneri K-218]
gi|333020096|gb|EGK39367.1| uptake hydrogenase large subunit [Shigella flexneri K-304]
Length = 597
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 42/104 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + ++ + V G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
A+E +GI++P +IR + HL++ A
Sbjct: 87 SVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130
Score = 90.8 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 13/93 (13%), Positives = 24/93 (25%), Gaps = 16/93 (17%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQ 366
+ + EAP+G G + K + P + +
Sbjct: 488 EKWEPATWPTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVPTTWNASPRDPKGQIG 546
Query: 367 AMEFLCKGHQLA------DVSAILGSLDIVFGE 393
A E ++A ++ L S D
Sbjct: 547 AYEAALMNTKMAIPEQPLEILRTLHSFDPCLAC 579
>gi|331676763|ref|ZP_08377459.1| hydrogenase-1 large chain (NiFe hydrogenase) (Membrane-bound
hydrogenase 1 large subunit) (HYD1) [Escherichia coli
H591]
gi|331075452|gb|EGI46750.1| hydrogenase-1 large chain (NiFe hydrogenase) (Membrane-bound
hydrogenase 1 large subunit) (HYD1) [Escherichia coli
H591]
Length = 597
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 42/104 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + ++ + V G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
A+E +GI++P +IR + HL++ A
Sbjct: 87 SVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130
Score = 90.8 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 13/93 (13%), Positives = 24/93 (25%), Gaps = 16/93 (17%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQ 366
+ + EAP+G G + K + P + +
Sbjct: 488 EKWEPATWPTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVPTTWNASPRDPKGQIG 546
Query: 367 AMEFLCKGHQLA------DVSAILGSLDIVFGE 393
A E ++A ++ L S D
Sbjct: 547 AYEAALMNTKMAIPEQPLEILRTLHSFDPCLAC 579
>gi|300902862|ref|ZP_07120809.1| nickel-dependent hydrogenase [Escherichia coli MS 84-1]
gi|301302410|ref|ZP_07208541.1| nickel-dependent hydrogenase [Escherichia coli MS 124-1]
gi|300405094|gb|EFJ88632.1| nickel-dependent hydrogenase [Escherichia coli MS 84-1]
gi|300842249|gb|EFK70009.1| nickel-dependent hydrogenase [Escherichia coli MS 124-1]
gi|315258021|gb|EFU37989.1| nickel-dependent hydrogenase [Escherichia coli MS 85-1]
Length = 597
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 42/104 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + ++ + V G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
A+E +GI++P +IR + HL++ A
Sbjct: 87 SVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130
Score = 90.4 bits (223), Expect = 5e-16, Method: Composition-based stats.
Identities = 13/93 (13%), Positives = 24/93 (25%), Gaps = 16/93 (17%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQ 366
+ + EAP+G G + K + P + +
Sbjct: 488 EKWEPVTWPTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVPTTWNASPRDPKGQIG 546
Query: 367 AMEFLCKGHQLA------DVSAILGSLDIVFGE 393
A E ++A ++ L S D
Sbjct: 547 AYEAALMNTKMAIPEQPLEILRTLHSFDPCLAC 579
>gi|194432484|ref|ZP_03064771.1| nickel-dependent hydrogenase 1, large subunit [Shigella dysenteriae
1012]
gi|194419371|gb|EDX35453.1| nickel-dependent hydrogenase 1, large subunit [Shigella dysenteriae
1012]
gi|332092479|gb|EGI97552.1| uptake hydrogenase large subunit [Shigella boydii 5216-82]
gi|332095864|gb|EGJ00871.1| uptake hydrogenase large subunit [Shigella dysenteriae 155-74]
Length = 597
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 42/104 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + ++ + V G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
A+E +GI++P +IR + HL++ A
Sbjct: 87 SVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130
Score = 90.8 bits (224), Expect = 4e-16, Method: Composition-based stats.
Identities = 13/93 (13%), Positives = 24/93 (25%), Gaps = 16/93 (17%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQ 366
+ + EAP+G G + K + P + +
Sbjct: 488 EKWEPATWPTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVPTTWNASPRDPKGQIG 546
Query: 367 AMEFLCKGHQLA------DVSAILGSLDIVFGE 393
A E ++A ++ L S D
Sbjct: 547 AYEAALMNTKMAIPEQPLEILRTLHSFDPCLAC 579
>gi|170769963|ref|ZP_02904416.1| nickel-dependent hydrogenase 1, large subunit [Escherichia albertii
TW07627]
gi|170121147|gb|EDS90078.1| nickel-dependent hydrogenase 1, large subunit [Escherichia albertii
TW07627]
Length = 597
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 42/104 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + ++ + V G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
A+E +GI++P +IR + HL++ A
Sbjct: 87 SVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130
Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 14/93 (15%), Positives = 24/93 (25%), Gaps = 16/93 (17%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQ 366
+ + EAP+G G + K + P + +
Sbjct: 488 EKWEPATWPTECRGVGFTEAPRGALGHWAAIR-DGKIELYQCVVPTTWNASPRDPKGQIG 546
Query: 367 AMEFLCKGHQLA------DVSAILGSLDIVFGE 393
A E Q+A ++ L S D
Sbjct: 547 AYEAALMNTQMAIPEQPLEILRTLHSFDPCLAC 579
>gi|193070054|ref|ZP_03051001.1| nickel-dependent hydrogenase 1, large subunit [Escherichia coli
E110019]
gi|192956651|gb|EDV87107.1| nickel-dependent hydrogenase 1, large subunit [Escherichia coli
E110019]
Length = 597
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 42/104 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + ++ + V G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
A+E +GI++P +IR + HL++ A
Sbjct: 87 SVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130
Score = 90.8 bits (224), Expect = 4e-16, Method: Composition-based stats.
Identities = 13/93 (13%), Positives = 24/93 (25%), Gaps = 16/93 (17%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQ 366
+ + EAP+G G + K + P + +
Sbjct: 488 EKWEPATWPTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVPTTWNASPRDPKGQIG 546
Query: 367 AMEFLCKGHQLA------DVSAILGSLDIVFGE 393
A E ++A ++ L S D
Sbjct: 547 AYEAALMNTKMAIPEQPLEILRTLHSFDPCLAC 579
>gi|126732738|ref|ZP_01748533.1| hydrogenase protein large subunit [Sagittula stellata E-37]
gi|126706734|gb|EBA05805.1| hydrogenase protein large subunit [Sagittula stellata E-37]
Length = 597
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 33/282 (11%), Positives = 68/282 (24%), Gaps = 49/282 (17%)
Query: 159 GGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
+ DIP + P DL T + + + + + +G +
Sbjct: 300 CLAYGDIPENPNDFSTDQL-HLPRGAIINGDLTTVHDVDPRDPEQVQEFVDHSWYTYGEA 358
Query: 219 GVMIR-GSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCV 277
G + G + P + D + + E + R V
Sbjct: 359 GKGLHPWDGVTEPNYELGPNAKGTRTDIKELDEAAKYSWIKAPRWRGNAMEVGPLARYVV 418
Query: 278 NRLLGKNKVGPVSASDPKIVPPKRADM--------KRSMES-----LIHHF--------- 315
G ++ + + + R++ES L HF
Sbjct: 419 GYAKGHEEIKDQVDGLLRDMDLPLEAVFSTLGRTAARALESEYCGRLQKHFFDKLVTNIK 478
Query: 316 ---------KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA--- 363
+ + EAP+G G ++ + + P
Sbjct: 479 NGDESTANVAKWDPSTWPKEAKGVGMTEAPRGALGHWVRIK-DGRIDNYQCVVPTTWNGS 537
Query: 364 ------HLQAMEFLCKGHQLA------DVSAILGSLDIVFGE 393
++ A E ++ ++ L S D
Sbjct: 538 PRDTAGNIGAFEASLMNTKMERPEEPVEILRTLHSFDPCLAC 579
Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 39/102 (38%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D E R G + RG E +++ + A + +R+ V
Sbjct: 26 IEGHMRCEVNVDEEGFIRNAVSTGTMWRGLEVILKGRDPRDAWAFTERICGVCTGTHALT 85
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI IP IR + I H+++
Sbjct: 86 SVRAVEDALGITIPDNANSIRNIMQLNLEIHDHIVHFYHLHA 127
>gi|85543891|pdb|1WUJ|L Chain L, Three-Dimensional Structure Of The Ni-B State Of
[nife]hydrogenase From Desulufovibrio Vulgaris Miyazaki
F
gi|85543893|pdb|1WUK|L Chain L, High Resolution Structure Of The Oxidized State Of
[nife]hydrogenase From Desulufovibrio Vulgaris Miyazaki
F
gi|85543895|pdb|1WUL|L Chain L, High Resolution Structure Of The Reduced State Of
[nife]hydrogenase From Desulufovibrio Vulgaris Miyazaki
F
Length = 534
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 1/105 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E++ V+ L RG E +++ + A + R V A
Sbjct: 15 IEGHLRIEVEVENGKVKNA-YSSSTLFRGLEIILKGRDPRDAQHFTQRTCGVCTYTHALA 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
V+ +G+ IP IR L + H+++
Sbjct: 74 STRCVDNAVGVHIPKNATYIRNLVLGAQYLHDHIVHFYHLHALDF 118
Score = 105 bits (263), Expect = 9e-21, Method: Composition-based stats.
Identities = 42/356 (11%), Positives = 82/356 (23%), Gaps = 75/356 (21%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDI--PPEL 169
H ++ A L + K H + GGV P+
Sbjct: 177 HPAYYLDPETNLIATAHYLEALRLQVKAARAMAVFGAKNPHTQFTVVGGVTCYDALTPQR 236
Query: 170 VEDIGCWCDSFPSALNDIS--DLLTGNRIFKQRNVNIG---------------------- 205
+ + + ++++ DLL +K G
Sbjct: 237 IAEFEALWKETKAFVDEVYIPDLLVVAAAYKDWTQYGGTDNFITFGEFPKDEYDLNSRFF 296
Query: 206 ---TVKLEDAWGWGFSGVMIRGSGAAWDLRK----SQPYECYSELDFDIPIGKHGDCYDR 258
V D M + P++ ++ + G + +
Sbjct: 297 KPGVVFKRDFKNIKPFDKMQIEEHVRHSWYEGAEARHPWKGQTQPKYTDLHGDDRYSWMK 356
Query: 259 YLVRMMEMRESVKIIRQCVNRLLGKNKVGPV------------------------SASDP 294
M E E+ + + + G KV V +
Sbjct: 357 APRYMGEPMETGPLAQVLIAYSQGHPKVKAVTDAVLAKLGVGPEALFSTLGRTAARGIET 416
Query: 295 KIVPPKRADMKRSMESLIHHFKLY--TEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKP 352
++ M + + I E V AP+G ++ K
Sbjct: 417 AVIAEYVGVMLQEYKDNIAKGDNVICAPWEMPKQAEGVGFVNAPRGGLSHWIRI-EDGKI 475
Query: 353 YRCKIRAPGYA--------H-LQAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
++ P + L +E G +AD + + S D
Sbjct: 476 GNFQLVVPSTWTLGPRCDKNKLSPVEASLIGTPVADAKRPVEILRTVHSFDPXIAC 531
>gi|208808548|ref|ZP_03250885.1| nickel-dependent hydrogenase 1, large subunit [Escherichia coli
O157:H7 str. EC4206]
gi|208728349|gb|EDZ77950.1| nickel-dependent hydrogenase 1, large subunit [Escherichia coli
O157:H7 str. EC4206]
Length = 597
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 42/104 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + ++ + V G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
A+E +GI++P +IR + HL++ A
Sbjct: 87 SVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130
Score = 91.2 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 13/93 (13%), Positives = 24/93 (25%), Gaps = 16/93 (17%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQ 366
+ + EAP+G G + K + P + +
Sbjct: 488 EKWEPTTWPTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVPTTWNASPRDPKGQIG 546
Query: 367 AMEFLCKGHQLA------DVSAILGSLDIVFGE 393
A E ++A ++ L S D
Sbjct: 547 AYEAALMNTKMAIPEQPLEILRTLHSFDPCLAC 579
>gi|325496903|gb|EGC94762.1| hydrogenase 1 large subunit [Escherichia fergusonii ECD227]
Length = 597
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 42/104 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + ++ + V G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
A+E +GI++P +IR + HL++ A
Sbjct: 87 SVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130
Score = 90.8 bits (224), Expect = 4e-16, Method: Composition-based stats.
Identities = 13/93 (13%), Positives = 24/93 (25%), Gaps = 16/93 (17%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQ 366
+ + EAP+G G + K + P + +
Sbjct: 488 EKWEPATWPTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVPTTWNASPRDPKGQIG 546
Query: 367 AMEFLCKGHQLA------DVSAILGSLDIVFGE 393
A E ++A ++ L S D
Sbjct: 547 AYEAALMNTKMAIPEQPLEILRTLHSFDPCLAC 579
>gi|38233284|ref|NP_939051.1| putative reducing hydrogenase alpha subunit [Corynebacterium
diphtheriae NCTC 13129]
gi|38199543|emb|CAE49194.1| Putative reducing hydrogenase alpha subunit [Corynebacterium
diphtheriae]
Length = 347
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 42/351 (11%), Positives = 91/351 (25%), Gaps = 66/351 (18%)
Query: 52 LIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILS 111
++ + + RL + P+ A A++ L G+E+P QL+R+L +
Sbjct: 38 MLVGRNVAEVPDIVKRLCGLCPVAHHLAGVRALDALCGVEVPESAQLVRLLLHHGSIL-- 95
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
+ + A PGGV P+ +
Sbjct: 96 ----------------YASRDMDIKRLGKAVMAAAGSPGHFPDVAIPGGVRALPDPQALA 139
Query: 172 DIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDL 231
++ + S D +G + + + + +
Sbjct: 140 ELRLPENYEESFEPVPYDGFDMMLTSHGTLDPLGDHVTARSGEERITFDLQTWADHVAES 199
Query: 232 RKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSA 291
R P +G +
Sbjct: 200 RPGDPAPRPLVHGHPYRVGPYAHGEA---------------------------------- 225
Query: 292 SDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNK 351
+VP A+++R + + + + G AVE P+G +++
Sbjct: 226 ----MVPRSLAEIRRIIADPRLCEGEFRKESSILSGIGVGAVEGPRGLLVHRYVANEDGV 281
Query: 352 PYRCKIRAPGYAH----LQAMEFLC-----KGHQLADVSAILGSLDIVFGE 393
C+I P + +E +G +L+ V + + +
Sbjct: 282 LVDCQILTPTAQNEAWLASMLEASLQQDSDRGVELS-VENSIRTANPCLPC 331
>gi|294637159|ref|ZP_06715467.1| hydrogenase-2 large chain [Edwardsiella tarda ATCC 23685]
gi|291089623|gb|EFE22184.1| hydrogenase-2 large chain [Edwardsiella tarda ATCC 23685]
Length = 567
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 26/129 (20%), Positives = 45/129 (34%), Gaps = 5/129 (3%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ V + G + RG E +++ A R+ V A
Sbjct: 13 IEGHLRIDCEIENGKVTKA-WSSGTMWRGMEDIVKGNDPRDAWMIVQRICGVCTTIHAIA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKL 139
AVE +G ++P+ Q IR L I H+++ + A+ +
Sbjct: 72 SVRAVESAVGAKVPVNAQYIRNLILAAHSIHDHIVHFYQLS----AMDWVDITSALQADP 127
Query: 140 MVFYERASG 148
G
Sbjct: 128 NKCEAMLQG 136
Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 33/117 (28%), Gaps = 23/117 (19%)
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVG-------EVYAAVEAPKGEFGVYLISDGGNKP 352
+ + + ++LI + ++P EAP+G +++ G K
Sbjct: 435 LKDTLMQQWQALIDNIGKGDHVAYIPAEIDPNKEYRGVGFEEAPRGALSHWIVIKG-GKI 493
Query: 353 YRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
+ P + E G +AD V + S D
Sbjct: 494 ANYQAVVPSTWNSGPRNGQDEPGPYEQALVGTPVADINKPLEVVRTVHSFDPCMSCA 550
>gi|324113703|gb|EGC07678.1| nickel-dependent hydrogenase [Escherichia fergusonii B253]
Length = 597
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 42/104 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + ++ + V G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
A+E +GI++P +IR + HL++ A
Sbjct: 87 SVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130
Score = 90.4 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 14/93 (15%), Positives = 24/93 (25%), Gaps = 16/93 (17%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQ 366
+ + EAP+G G + K + P + +
Sbjct: 488 EKWEPATWPTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVPTTWNASPRDPKGQIG 546
Query: 367 AMEFLCKGHQLA------DVSAILGSLDIVFGE 393
A E Q+A ++ L S D
Sbjct: 547 AYEAALMNTQMAIPEQPLEILRTLHSFDPCLAC 579
>gi|323938077|gb|EGB34339.1| nickel-dependent hydrogenase [Escherichia coli E1520]
Length = 597
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 42/104 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + ++ + V G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
A+E +GI++P +IR + HL++ A
Sbjct: 87 SVYAIEDAIGIKVPDNANVIRNIMLATLWCHDHLVHFYQLAGMD 130
Score = 90.8 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 13/93 (13%), Positives = 24/93 (25%), Gaps = 16/93 (17%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQ 366
+ + EAP+G G + K + P + +
Sbjct: 488 EKWEPATWPTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVPTTWNASPRDPKGQIG 546
Query: 367 AMEFLCKGHQLA------DVSAILGSLDIVFGE 393
A E ++A ++ L S D
Sbjct: 547 AYEAALMNTKMAIPEQPLEILRTLHSFDPCLAC 579
>gi|114047651|ref|YP_738201.1| nickel-dependent hydrogenase, large subunit [Shewanella sp. MR-7]
gi|117920324|ref|YP_869516.1| nickel-dependent hydrogenase, large subunit [Shewanella sp. ANA-3]
gi|113889093|gb|ABI43144.1| nickel-dependent hydrogenase, large subunit [Shewanella sp. MR-7]
gi|117612656|gb|ABK48110.1| nickel-dependent hydrogenase, large subunit [Shewanella sp. ANA-3]
Length = 567
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 43/358 (12%), Positives = 72/358 (20%), Gaps = 90/358 (25%)
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
AL+ L E + G + H GGV + W
Sbjct: 189 ALSHYLKALEVQRVAAEMLAIFGGKQPHPQSLVVGGVTSVRDMLSPARLQEWKQKHAIVT 248
Query: 185 NDISDLLTGNRIFKQRNVNI------------------------------GTVKLEDAWG 214
+ I + + G + D G
Sbjct: 249 DFILRAYQADIVMAAEAFGGEASVLGGVNVKNFMATNDFVLANGEYLFDQGVIMKGDLAG 308
Query: 215 WGFSGVMIRGSGAAWDLRKSQ-PYECYSELDFDIPIGKH----------------GDCYD 257
+ + + P Y G +
Sbjct: 309 VSDINPELIAEDVSHAWYSADAPQHPYDGTTIPNYTGFVERDTVYGKLPTLDGDGKYSWV 368
Query: 258 RYLVRMMEMRESVKIIRQCVNRLLGKNKV----------------------GPVSASDPK 295
+ E E + V+ G V G +A +
Sbjct: 369 KSPRYQGEPVEVGPLSCLLVSYARGNKVVVDAVNALLARTGLPVEALFTTLGRTAARMLQ 428
Query: 296 IVPPKRADMKRSMESLIHHFKLYTEGYHV---PVGEVYA--AVEAPKGEFGVYLISDGGN 350
V + +K L + T P E +EAP+G ++
Sbjct: 429 TVIVAQEGLKTFDALLTNIQSDETTYVKPHIDPSREYVGHAMIEAPRGMLSHWIRIK-NG 487
Query: 351 KPYRCKIRAPGYAH---------LQAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
+ P + + E G +L D V I+ S D
Sbjct: 488 VIENYQAVVPTTWNAGPVDANGKIGPYEASLIGLKLEDPTKPLEVIRIIHSFDPCMAC 545
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 42/101 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E+D V L RG E +++ +T + R+ V +
Sbjct: 13 IEGHLRIEVEVDENNVINKAWSSSTLWRGIEVILKGRTPMDVGLIVQRICGVCTYSHYRC 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI+IP+ + +R L + H+++
Sbjct: 73 GTEAVENALGIQIPLNAKYLRSLMQTSLYMHDHIVHFYHLH 113
>gi|118593005|ref|ZP_01550392.1| hydrogenase protein large subunit [Stappia aggregata IAM 12614]
gi|118434312|gb|EAV40966.1| hydrogenase protein large subunit [Stappia aggregata IAM 12614]
Length = 599
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 41/102 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D + + R G + RG E +++ + A + R+ V
Sbjct: 27 IEGHMRCEVNIDADNMIRNAVSTGTMWRGLEVILKGRDPRDAWAFTQRICGVCTGTHALT 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI+IP IR + +I HL++
Sbjct: 87 SVRAVEDALGIDIPENANSIRNIMQLSLQIHDHLVHFYHLHA 128
Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats.
Identities = 43/385 (11%), Positives = 84/385 (21%), Gaps = 114/385 (29%)
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+ A+T L + ++++M G +H + G +
Sbjct: 199 ADLMAVTHYLEALDFQKEIMTTRTIFGGKDIHPNWLVGGVPCAINLDGELAAGAPLNMER 258
Query: 181 PSALNDISDL---LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRG------------- 224
+ + I D N IG+ +G G SG +
Sbjct: 259 LNYVKSIIDRSLEFVRNVYLPDIFA-IGSFYKSWLYGGGLSGQSVLAYGDIPDKANDYSA 317
Query: 225 ----------------SGAAWDLRKSQ------PYECYSELDFDIPIGKH---------- 252
DLR + P+ YS D +
Sbjct: 318 ANLLMPRGAIINGNLKEVHEVDLRDPEQIQEFVPHSWYSYPDEKKGLHPWDGITEPNYAL 377
Query: 253 ------------------GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPV----- 289
+ + E + R V G
Sbjct: 378 GPNAKGTSTNIIELDESAKYSWIKAPRWRGHAMEVGPLARYVVGYAQGHEYFTEQINRTL 437
Query: 290 ---------------SASDPKIVPPKRADM-----------KRSMESLIHHFKLYTEGYH 323
+ + A+M ++ +S + + +
Sbjct: 438 TTLNVPVDALFSTLGRTAARALEAEWAAEMQVYFFDKLMANLKAGDSATANTEKFDPSTW 497
Query: 324 VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA---------HLQAMEFLCKG 374
+ EAP+G G ++ K + P ++ A E
Sbjct: 498 PAEVKGVGFTEAPRGALGHWIRIK-DGKIDNYQCVVPTTWNGSPRDNEGNIGAFEASLMN 556
Query: 375 HQLA------DVSAILGSLDIVFGE 393
++ ++ L S D
Sbjct: 557 TKVEVAEEPVEILRTLHSFDPCLAC 581
>gi|189423226|ref|YP_001950403.1| nickel-dependent hydrogenase large subunit [Geobacter lovleyi SZ]
gi|189419485|gb|ACD93883.1| nickel-dependent hydrogenase large subunit [Geobacter lovleyi SZ]
Length = 559
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 51/371 (13%), Positives = 93/371 (25%), Gaps = 89/371 (23%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H + +++ A L + ++K G H GGV + + +
Sbjct: 173 HPAMILPPEINLIATAHYLKALDYQQKAAQAVAILGGKNPHIQNLCVGGVATALNMDNLA 232
Query: 172 DIGCWCDSFPSALN----------DISDLLTGNRIFKQRNVNI----------------- 204
I ++ AL DLL + +K +
Sbjct: 233 TINMERIAYLKALMTETREFVKKVYYPDLLVIGKAYKDWFKHGKGVVNYLAVPEFAEDTK 292
Query: 205 --------GTVKLED---------AWGWGFSGVMIRGSGAAWDLRKS--QPYECYSELDF 245
G + D G + AW KS P+E ++ D+
Sbjct: 293 NTSFALPGGLIMGGDVAKARIISTHQDQQLIGSIKESVACAWYEGKSSLHPWEGETKPDY 352
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ + + + + + G +V + S K AD+
Sbjct: 353 TDFQENGKYSWCKAPRIDGKPIQVGPVAQLLAGYAAGNQRVRKLVDSTCKAAGVGVADLH 412
Query: 306 RSMESLIH-------------------------HFKLYTEGYHVPVGE--VYAAVEAPKG 338
+M L K Y +P GE EAP+G
Sbjct: 413 STMGRLAARGIRAHLLSDLSLEYLDKLVDNVGKGDKTYANHTEIPSGEHRGVGFHEAPRG 472
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLA------DVSAI 383
+++ K + P + E G+ +A +V
Sbjct: 473 VLSHWMVIK-NKKIKNYQAVVPSTWNASPRDAEGNAGPYEASLLGNPVAKPDQPLEVLRT 531
Query: 384 LGSLDIVFGEV 394
+ S D
Sbjct: 532 VHSFDPCIACA 542
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 34/214 (15%), Positives = 63/214 (29%), Gaps = 35/214 (16%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E+ G V + + RG E +++ + A Y R V +
Sbjct: 12 IEGHLRIDVEVTGGQVSKA-WSSAQMWRGIETILKDRPPQDAWIYAQRFCGVCTTVHAIS 70
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ-------------------- 119
+VE L +E+P+ Q IR + + H+++
Sbjct: 71 SIRSVEHALKVEVPLNAQYIRNIIMAQHSVQDHIVHFYHLSALDWVDIVSALKADPKKAA 130
Query: 120 ------AMDVGA----LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL 169
+ G + + ASG H A P ++
Sbjct: 131 SIAQSVSDWPGNSEKEFSDVQKRLKAFVDSGKLGIFASGYWGHPAMILPPEINLIATAHY 190
Query: 170 VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVN 203
++ D A ++ L N + V
Sbjct: 191 LKA----LDYQQKAAQAVAILGGKNPHIQNLCVG 220
>gi|307825757|ref|ZP_07655974.1| nickel-dependent hydrogenase large subunit [Methylobacter
tundripaludum SV96]
gi|307733334|gb|EFO04194.1| nickel-dependent hydrogenase large subunit [Methylobacter
tundripaludum SV96]
Length = 598
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 40/102 (39%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D + + R G + RG E +++ + A + R+ V
Sbjct: 27 IEGHMRCEVNIDEDNIIRNAISSGTMWRGLEVILKGRDPRDAWAFVQRICGVCTGTHALT 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE L I+IP IR L ++ HL++
Sbjct: 87 SVRAVEDALKIKIPENANSIRNLMQLSLQVQDHLVHFYHLHA 128
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 38/383 (9%), Positives = 73/383 (19%), Gaps = 111/383 (28%)
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+ A+T L + ++ +M G H + G + + +
Sbjct: 199 ADLMAVTHYLEALDFQKDIMKIRTVFGGKDPHPNWLVGGVPCAINIDGVGANGAINMERL 258
Query: 181 ------------PSALNDISDLLTGNRIFKQRNVNIG----------------------- 205
I DLL +K G
Sbjct: 259 NLVSSIIDRTIDFIDQVYIPDLLAIAGFYKGWMYGGGISGQSLLSYGDIPDKANDYSPSN 318
Query: 206 -----------------------------TVKLEDAWGWGFSGVMIRGSGAAWDLRKSQP 236
+ S + G K P
Sbjct: 319 LLMPRGAIINGDLTKVHEVDLTDPEQIKEFIPHSWYKYPDESLGLHPWDGVTEPNYKLGP 378
Query: 237 YECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKI 296
+ + E + R + G ++ K
Sbjct: 379 NTKGDRTHIKELDEAAKYSWIKAPRWRGHAMEVGPLARYVIGYAQGNKEITEQINFVLKT 438
Query: 297 ---------------------VPPKRADMKRSMESLIHHFK----------LYTEGYHVP 325
M+ M+ ++ + K +
Sbjct: 439 LDVPVTALFSTLGRTAARGLEAQWAAGKMRYFMDKMVANIKSGDLATANVAKWDPETWPN 498
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA---------HLQAMEFLCKGHQ 376
+ EAP+G G +L K + P ++ A E +
Sbjct: 499 SVKGVGFTEAPRGALGHWLKI-ENTKIANYQCVVPTTWNGSPRDEQGNIGAFEAALMNTK 557
Query: 377 LA------DVSAILGSLDIVFGE 393
+ ++ L S D
Sbjct: 558 VERPEEPVEILRTLHSFDPCLAC 580
>gi|56415088|ref|YP_152163.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197364017|ref|YP_002143654.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|56129345|gb|AAV78851.1| hydrogenase-2 large subunit [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197095494|emb|CAR61058.1| hydrogenase-2 large subunit [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
Length = 567
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ +V + G + RG E++++ + A R+ V +
Sbjct: 13 IEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIMKNRDPRDAWMIVQRICGVCTTTHAIS 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A E L I++P+ Q IR + H+++ +
Sbjct: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113
Score = 97.3 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 19/91 (20%)
Query: 322 YHVPV-GE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAME 369
++P GE +EAP+G +++ + P + + E
Sbjct: 461 PNIPATGEFKGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYE 519
Query: 370 FLCKGHQLAD------VSAILGSLDIVFGEV 394
G +AD V + S D
Sbjct: 520 QSLVGTPIADPAKPLEVVRTIHSFDPCMACA 550
>gi|268679733|ref|YP_003304164.1| nickel-dependent hydrogenase large subunit [Sulfurospirillum
deleyianum DSM 6946]
gi|268617764|gb|ACZ12129.1| nickel-dependent hydrogenase large subunit [Sulfurospirillum
deleyianum DSM 6946]
Length = 584
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 41/101 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D V L RG E +++ + A R+ V + A
Sbjct: 13 IEGHLRVEVIVDDNNVVTEAYASSTLWRGIETILKGRDPRDAGFMVQRICGVCTYSHYKA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGIE P+ +L R L + + H+++
Sbjct: 73 GIAAVENALGIEPPLNAKLTRTLMNCALFLHDHVVHFYHLH 113
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 48/401 (11%), Positives = 92/401 (22%), Gaps = 107/401 (26%)
Query: 98 LIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFR 157
L H T ++ A++ L E + + H
Sbjct: 162 KKGNLGPFANAYWGHATYKLTPEQNLIAVSHYLKALEMQRVAAQMMAIFGAKQPHPQSLT 221
Query: 158 PGGVHQDIPPELVEDIGCWCDSFPSALN-----DISDLLTG-----------------NR 195
GGV + + +G + F +D++ N
Sbjct: 222 VGGVTCIMDLQTPSRLGEYMTKFKEMAEFVNRAYYADVVMAGLAYANEPSVTGGLGVPNL 281
Query: 196 IFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAW--------------------DLRKSQ 235
Q + L ++ V+ SG + D
Sbjct: 282 WTHQEFQVNASEYLFNSGLMMGEDVVNLISGKPFKVQQIDESKITEEATHAWYKDNAAYH 341
Query: 236 PYECYSELDF------------------DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCV 277
PYE E ++ + K + + + + + V
Sbjct: 342 PYEGRQEPNYTGLKDAQTINDKGVLAPTKVVDEKGKYTWVKAPRYDGKPLQVGPLANIVV 401
Query: 278 NRLLGKNKVGPVSASDPKIVPPKRADM---------------------KRSMESLIHHFK 316
N LG +V V K + + + SLI++ K
Sbjct: 402 NYALGNKRVKTVVDKFLKDTGLPISAVASTLGRTACRMLETKVVADYGLEAFTSLINNLK 461
Query: 317 L---YTEGYHVPV-----GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA- 367
+ Y + G V P+G ++ + P +
Sbjct: 462 VDDSTCATYKIDKNKEYKGRYIGHV--PRGTLSHWVKIK-NGVIENYQAVVPTTWNASPK 518
Query: 368 --------MEFLCKGHQLAD------VSAILGSLDIVFGEV 394
E G ++AD + ++ S D
Sbjct: 519 DAKGIRGSYEESLIGLKIADLSQPLEIVRLVHSYDPCLACA 559
>gi|2495220|sp|Q46046|MBHL_CITFR RecName: Full=Hydrogenase-1 large chain; Short=HYD1; AltName:
Full=Membrane-bound hydrogenase 1 large subunit;
AltName: Full=NiFe hydrogenase
gi|466529|dbj|BAA05930.1| hydrogenase large subunit [Citrobacter freundii]
Length = 597
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 42/104 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D + + G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNIDEQNIITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
A+E +GI++P +IR + HL++ A
Sbjct: 87 SVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130
Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 23/198 (11%), Positives = 48/198 (24%), Gaps = 47/198 (23%)
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKN---KVGPVSASDPKI-- 296
+ D + + + E + R + G + S K+
Sbjct: 383 DTDIQQLNEQERYSWIKAPRWRGHAMEVGPLARTLIAYHKGDAATIESVDRMMSALKLPL 442
Query: 297 ---------VPPKRADMKRSMESLIHHF-----------------KLYTEGYHVPVGEVY 330
+ + + + ++ L + F + +
Sbjct: 443 SGMQSTLGRILCRAHEAQWAVSKLQYFFDKLMTNLKNGNLATANTEKWEPASWPQQCRGI 502
Query: 331 AAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLA--- 378
EAP+G G + K + P + + A E G Q+A
Sbjct: 503 GFTEAPRGALGHWASIR-DQKIDVYQCVVPTTWNASPRDPEGQIGAYEAALMGTQMAIPD 561
Query: 379 ---DVSAILGSLDIVFGE 393
++ L S D
Sbjct: 562 QPLEILRTLHSFDPCLAC 579
>gi|254459103|ref|ZP_05072526.1| quinone-reactive Ni/Fe hydrogenase, large subunit
[Campylobacterales bacterium GD 1]
gi|207084374|gb|EDZ61663.1| quinone-reactive Ni/Fe hydrogenase, large subunit
[Campylobacterales bacterium GD 1]
Length = 583
Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 41/373 (10%), Positives = 80/373 (21%), Gaps = 104/373 (27%)
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A+ L + + G H GGV + I +
Sbjct: 190 AVAHYLQALDMQRDASKMMAIFGGKMPHPQSLVVGGVTCVQDIQNPARIAEFKSLLNKFR 249
Query: 185 NDISD------LLTGNRIFKQRNVNIGTVKLEDAWGW---------------GFSGVMIR 223
N I + L+ G + G+ SGV++
Sbjct: 250 NFIKNAYIPDVLMAGTVYADEALDGTGSGLKNYMSYGDFKLDDTGFYTSSQLFPSGVVLN 309
Query: 224 GS--------------GAAWDLRKS------QPYECYSELDF----------DIPIGKHG 253
G + + PY+ + + K
Sbjct: 310 GDLTKLYPLDQTKITEDVSHAWYEGANDKGLHPYDGVTNPKYTGLEKKEDGYSYLKTKEK 369
Query: 254 DCYDRYLVRMMEMRESVKIIRQCVN-----------------------RLLGKNKVGPVS 290
+ + + E + R V L +
Sbjct: 370 YSWIKSPLYDDTRMEVGPLARIAVGLAAGDENITKYAVSFLTKLGKTLGLKTAAPASVIF 429
Query: 291 ASDPKIVPPKRAD------MKRSMESL--------IHHFKLYTEGYHVPVGEVYAAVEAP 336
++ + M ++ L I + + + EAP
Sbjct: 430 STVGRTAARAIETELMADVMMGWVDELAANVASGDISTWTEFDFDKVSKDARGFGMAEAP 489
Query: 337 KGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VS 381
+G G +++ K + P + A E G ++AD +
Sbjct: 490 RGGLGHWVVIK-DGKIENYQAVVPSTWNAAPRDYKDRKGAYESALIGTKVADPEQPLEIL 548
Query: 382 AILGSLDIVFGEV 394
+ S D
Sbjct: 549 RTIHSFDPCIACA 561
Score = 95.0 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 19/102 (18%), Positives = 36/102 (35%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +D V + RG E +++ + A R+ V
Sbjct: 14 IEGHLRIEAVIDENNVITDAFASSTMFRGIETILKGRDPRDAGLLAMRICGVCTGTHYQR 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE ++IP +++R L + H+++
Sbjct: 74 SIEAVEDAFKLKIPKNARIVRNLIQGALYVHDHVVHFYHLHA 115
>gi|283834371|ref|ZP_06354112.1| nickel-iron hydrogenase, large subunit [Citrobacter youngae ATCC
29220]
gi|291069913|gb|EFE08022.1| nickel-iron hydrogenase, large subunit [Citrobacter youngae ATCC
29220]
Length = 597
Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 42/104 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D + + G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNIDEQNIITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
A+E +GI++P +IR + HL++ A
Sbjct: 87 SVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130
Score = 88.1 bits (217), Expect = 3e-15, Method: Composition-based stats.
Identities = 23/198 (11%), Positives = 48/198 (24%), Gaps = 47/198 (23%)
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKN---KVGPVSASDPKI-- 296
+ D + + + E + R + G + S K+
Sbjct: 383 DTDIQQLNEQERYSWIKAPRWRGHAMEVGPLARTLIAYHKGDAATIESVDRMMSALKLPL 442
Query: 297 ---------VPPKRADMKRSMESLIHHF-----------------KLYTEGYHVPVGEVY 330
+ + + + ++ L + F + +
Sbjct: 443 SGMQSTLGRILCRAHEAQWAVSKLQYFFDKLMTNLKNGNLATANTEKWEPESWPQHCRGI 502
Query: 331 AAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLA--- 378
EAP+G G + K + P + + A E G Q+A
Sbjct: 503 GFTEAPRGALGHWASIR-DQKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMGTQMAIPD 561
Query: 379 ---DVSAILGSLDIVFGE 393
++ L S D
Sbjct: 562 QPLEILRTLHSFDPCLAC 579
>gi|349635|gb|AAA16060.1| NADH dehydrogenase subunit [Salmonella enterica subsp. enterica
serovar Typhimurium]
Length = 81
Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats.
Identities = 31/79 (39%), Positives = 44/79 (55%)
Query: 318 YTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQL 377
+ G +P E + VEA KG YL SDG YR ++R P +AHLQ + +G +
Sbjct: 3 VSWGPVMPAQESFQMVEATKGINSYYLTSDGSTMSYRTRVRTPSFAHLQQIPSAIRGSLV 62
Query: 378 ADVSAILGSLDIVFGEVDR 396
+D+ LGS+D V +VDR
Sbjct: 63 SDLIVYLGSIDFVMSDVDR 81
>gi|161503086|ref|YP_001570198.1| hydrogenase 1 large subunit [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:-- str. RSK2980]
gi|160864433|gb|ABX21056.1| hypothetical protein SARI_01151 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 597
Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats.
Identities = 25/129 (19%), Positives = 52/129 (40%), Gaps = 8/129 (6%)
Query: 2 DKKKSRSFTIN-------FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIE 54
++ +++ +T+N P G +R + +D + V G + RG E +++
Sbjct: 3 NQYQTQGYTVNNAGRRLIVDPIT-RIEGHMRCEVNIDEQNVITNAVSCGTMFRGLEIILQ 61
Query: 55 TKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLL 114
+ A + +R+ V A A+E +GI++P +IR + HL+
Sbjct: 62 GRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIQVPDNANIIRNIMLATLWCHDHLV 121
Query: 115 NVTTQAMDV 123
+ A
Sbjct: 122 HFYQLAGMD 130
Score = 88.1 bits (217), Expect = 3e-15, Method: Composition-based stats.
Identities = 15/93 (16%), Positives = 25/93 (26%), Gaps = 16/93 (17%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQ 366
+ + EAP+G G + K + P + +
Sbjct: 488 EKWEPVSWPQHCRGIGFTEAPRGALGHWASIR-DQKIELYQCVVPTTWNASPRDPKKQIG 546
Query: 367 AMEFLCKGHQLA------DVSAILGSLDIVFGE 393
A E G Q+A ++ L S D
Sbjct: 547 AYEAALMGTQMAIPDQPLEILRTLHSFDPCLAC 579
>gi|119774814|ref|YP_927554.1| hydrogenase large chain [Shewanella amazonensis SB2B]
gi|119767314|gb|ABL99884.1| hydrogenase large chain [Shewanella amazonensis SB2B]
Length = 567
Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats.
Identities = 42/358 (11%), Positives = 76/358 (21%), Gaps = 90/358 (25%)
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
AL+ L E + G + H GGV + W
Sbjct: 189 ALSHYLKALEVQRVAAEMLAIFGGKQPHPQSLVVGGVTSVRDMLSPARLQEWKQKHAYVT 248
Query: 185 NDISDLLTGNRIFKQRNVNI------------------------------GTVKLEDAWG 214
+ I + + G + D G
Sbjct: 249 DFIKRAYQADIVMAAEAFGTEPSVLGGVNVKNFLATDDFVLADGEYMFNGGVIMNGDLAG 308
Query: 215 WGFSGVMIRGSGAAWDLRK----SQPYECYSELDFDIPI-------------GKHGDCYD 257
+ PY+ + ++ + G +
Sbjct: 309 VSDINPDLIAEDVTHAWYSADNAQHPYDGTTVPNYTGFVERDTVYGKLPTLDGDGKYSWV 368
Query: 258 RYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM------------- 304
+ E E + V+ G V +
Sbjct: 369 KSPRYNGEPVEVGPLSSLLVSYARGNKVVVDAVNGLLARTGLPVEALFTTLGRTAARMLQ 428
Query: 305 --------KRSMESLIHHFKLYTEGYHVPV----GEVYA--AVEAPKGEFGVYLISDGGN 350
R+ ++L+ + + Y P E +EAP+G ++ G
Sbjct: 429 TVIVADEGLRTFDALLTNIQSDEATYVKPEIDANKEYVGHAMIEAPRGMLSHWIRIKG-G 487
Query: 351 KPYRCKIRAPGYAH---------LQAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
K + P + + E G +L D V I+ S D
Sbjct: 488 KVENYQAVVPTTWNAGPKDANGKIGPYEASLIGLKLEDPTKPLEVIRIIHSFDPCMAC 545
Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 43/101 (42%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E+D V + L RG E +++ +T + R+ V +
Sbjct: 13 IEGHLRVEVEVDENNVIQNAWSSSTLWRGIEVILKGRTPMDVGLIVQRICGVCTYSHYRC 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LG++IP+ + +R L + H+++
Sbjct: 73 GTEAVENALGVKIPLNAKYLRSLMQTSLYMHDHIVHFYHLH 113
>gi|205352544|ref|YP_002226345.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205272325|emb|CAR37205.1| hydrogenase-1 large chain (nifE hydrogenase) [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|326627603|gb|EGE33946.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9]
Length = 597
Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats.
Identities = 25/129 (19%), Positives = 52/129 (40%), Gaps = 8/129 (6%)
Query: 2 DKKKSRSFTIN-------FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIE 54
++ +++ +T+N P G +R + +D + V G + RG E +++
Sbjct: 3 NQYQTQGYTVNDAGRRLIVDPIT-RIEGHMRCEVNIDEQNVITNAVSCGTMFRGLEIILQ 61
Query: 55 TKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLL 114
+ A + +R+ V A A+E +GI++P +IR + HL+
Sbjct: 62 GRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIQVPDNANIIRNIMLATLWCHDHLV 121
Query: 115 NVTTQAMDV 123
+ A
Sbjct: 122 HFYQLAGMD 130
Score = 88.5 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/234 (12%), Positives = 61/234 (26%), Gaps = 33/234 (14%)
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFS-GVMIRGSGAAWDLRKSQPYECYSELDFDIP- 248
+ ++ + +G + ++ G + L + + Y +
Sbjct: 348 FVDHAWYRYPDDRLGRHPFDGITDPWYNPGDVKGSDTHIQQLNEQERYSWIKAPRWRGHA 407
Query: 249 --IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK- 305
+G Y ESV + + +L + + + A K
Sbjct: 408 MEVGPLARTLIAYHKGDAATIESVDRMMSAL-KLPLSGIQSTLGRILCRAHEAQWAVGKL 466
Query: 306 -----RSMESLIHHF------KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYR 354
R M +L + + + EAP+G G + K
Sbjct: 467 QYFFDRLMTNLKNGDLATANTEKWEPASWPQHCRGIGFTEAPRGALGHWASIR-DQKIEL 525
Query: 355 CKIRAPGYAH---------LQAMEFLCKGHQLA------DVSAILGSLDIVFGE 393
+ P + + A E G Q+A ++ L S D
Sbjct: 526 YQCVVPTTWNASPRDPKKQIGAYEAALMGTQMAIPDQPLEILRTLHSFDPCLAC 579
>gi|204927607|ref|ZP_03218808.1| nickel-dependent hydrogenase family protein [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|204322949|gb|EDZ08145.1| nickel-dependent hydrogenase family protein [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
Length = 597
Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats.
Identities = 25/129 (19%), Positives = 52/129 (40%), Gaps = 8/129 (6%)
Query: 2 DKKKSRSFTIN-------FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIE 54
++ +++ +T+N P G +R + +D + V G + RG E +++
Sbjct: 3 NQYQTQGYTVNDAGRRLIVDPIT-RIEGHMRCEVNIDEQNVITNAVSCGTMFRGLEIILQ 61
Query: 55 TKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLL 114
+ A + +R+ V A A+E +GI++P +IR + HL+
Sbjct: 62 GRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIQVPDNANIIRNIMLATLWCHDHLV 121
Query: 115 NVTTQAMDV 123
+ A
Sbjct: 122 HFYQLAGMD 130
Score = 88.5 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/234 (12%), Positives = 61/234 (26%), Gaps = 33/234 (14%)
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFS-GVMIRGSGAAWDLRKSQPYECYSELDFDIP- 248
+ ++ + +G + ++ G + L + + Y +
Sbjct: 348 FVDHAWYRYPDDRLGRHPFDGITDPWYNPGDVKGSDTHIQQLNEQERYSWIKAPRWRGHA 407
Query: 249 --IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK- 305
+G Y ESV + + +L + + + A K
Sbjct: 408 MEVGPLARTLIAYHKGDAATIESVDRMMSAL-KLPLSGIQSTLGRILCRAHEAQWAVGKL 466
Query: 306 -----RSMESLIHHF------KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYR 354
R M +L + + + EAP+G G + K
Sbjct: 467 QYFFDRLMTNLKNGDLATANTEKWEPASWPQHCRGIGFTEAPRGALGHWASIR-DQKIEL 525
Query: 355 CKIRAPGYAH---------LQAMEFLCKGHQLA------DVSAILGSLDIVFGE 393
+ P + + A E G Q+A ++ L S D
Sbjct: 526 YQCVVPTTWNASPRDPKKQIGAYEAALMGTQMAIPDQPLEILRTLHSFDPCLAC 579
>gi|161613708|ref|YP_001587673.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|161363072|gb|ABX66840.1| hypothetical protein SPAB_01433 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 597
Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats.
Identities = 25/129 (19%), Positives = 52/129 (40%), Gaps = 8/129 (6%)
Query: 2 DKKKSRSFTIN-------FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIE 54
++ +++ +T+N P G +R + +D + V G + RG E +++
Sbjct: 3 NQYQTQGYTVNDAGRRLIVDPIT-RIEGHMRCEVNIDEQNVITNAVSCGTMFRGLEIILQ 61
Query: 55 TKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLL 114
+ A + +R+ V A A+E +GI++P +IR + HL+
Sbjct: 62 GRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIQVPDNANIIRNIMLATLWCHDHLV 121
Query: 115 NVTTQAMDV 123
+ A
Sbjct: 122 HFYQLAGMD 130
Score = 88.5 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/234 (12%), Positives = 61/234 (26%), Gaps = 33/234 (14%)
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFS-GVMIRGSGAAWDLRKSQPYECYSELDFDIP- 248
+ ++ + +G + ++ G + L + + Y +
Sbjct: 348 FVDHAWYRYPDDRLGRHPFDGITDPWYNPGDVKGSDTHIQQLNEQERYSWIKAPRWRGHA 407
Query: 249 --IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK- 305
+G Y ESV + + +L + + + A K
Sbjct: 408 MEVGPLARTLIAYHKGDAATIESVDRMMSAL-KLPLSGIQSTLGRILCRAHEAQWAVGKL 466
Query: 306 -----RSMESLIHHF------KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYR 354
R M +L + + + EAP+G G + K
Sbjct: 467 QYFFDRLMTNLKNGDLATANTEKWEPASWPQHCRGIGFTEAPRGALGHWASIR-DQKIEL 525
Query: 355 CKIRAPGYAH---------LQAMEFLCKGHQLA------DVSAILGSLDIVFGE 393
+ P + + A E G Q+A ++ L S D
Sbjct: 526 YQCVVPTTWNASPRDPKKQIGAYEAALMGTQMAIPDQPLEILRTLHSFDPCLAC 579
>gi|224583722|ref|YP_002637520.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|224468249|gb|ACN46079.1| hydrogenase-1 large chain (nifE hydrogenase) [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
Length = 597
Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 42/104 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D + V G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNIDEQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
A+E +GI++P +IR + HL++ A
Sbjct: 87 SVYAIEDAIGIQVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130
Score = 88.5 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/234 (12%), Positives = 61/234 (26%), Gaps = 33/234 (14%)
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFS-GVMIRGSGAAWDLRKSQPYECYSELDFDIP- 248
+ ++ + +G + ++ G + L + + Y +
Sbjct: 348 FVDHAWYRYPDDRLGRHPFDGITDPWYNPGDVKGSDTHIQQLNEQERYSWIKAPRWRGHA 407
Query: 249 --IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK- 305
+G Y ESV + + +L + + + A K
Sbjct: 408 MEVGPLARTLIAYHKGDAATIESVDRMMSAL-KLPLSGIQSTLGRILCRAHEAQWAVGKL 466
Query: 306 -----RSMESLIHHF------KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYR 354
R M +L + + + EAP+G G + K
Sbjct: 467 QYFFDRLMTNLKNGDLATANTEKWEPASWPQHCRGIGFTEAPRGALGHWASIR-DQKIEL 525
Query: 355 CKIRAPGYAH---------LQAMEFLCKGHQLA------DVSAILGSLDIVFGE 393
+ P + + A E G Q+A ++ L S D
Sbjct: 526 YQCVVPTTWNASPRDPKKQIGAYEAALMGTQMAIPDQPLEILRTLHSFDPCLAC 579
>gi|167553606|ref|ZP_02347355.1| hydrogenase-1 large chain [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|197248363|ref|YP_002146237.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197212066|gb|ACH49463.1| hydrogenase-1 large chain [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|205321982|gb|EDZ09821.1| hydrogenase-1 large chain [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
Length = 597
Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 42/104 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D + V G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNIDEQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
A+E +GI++P +IR + HL++ A
Sbjct: 87 SVYAIEDAIGIQVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130
Score = 88.5 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/235 (11%), Positives = 54/235 (22%), Gaps = 51/235 (21%)
Query: 209 LEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI----GKHGDCYDRYLVRMM 264
E + R +D Y D I + + +
Sbjct: 346 QEFVDHAWYRYPDDRQGRHPFDGITDPWYNPGDVKGSDTHIQQLNEQERYSWIKAPRWRG 405
Query: 265 EMRESVKIIRQCVNRLLGKN---KVGPVSASDPKI-----------VPPKRADMKRSMES 310
E + R + G + S K+ + + + + ++
Sbjct: 406 HAMEVGPLARTLIAYHKGDAATIESVDRMMSALKLPLSGIQSTLGRILCRAHEAQWAVGK 465
Query: 311 LIHHF-----------------KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPY 353
L + F + + EAP+G G + K
Sbjct: 466 LQYFFDRLMTNLKNGDLATANTEKWEPASWPQHCRGIGFTEAPRGALGHWASIR-DQKIE 524
Query: 354 RCKIRAPGYAH---------LQAMEFLCKGHQLA------DVSAILGSLDIVFGE 393
+ P + + A E G Q+A ++ L S D
Sbjct: 525 LYQCVVPTTWNASPRDPKKQIGAYEAALMGTQMAIPDQPLEILRTLHSFDPCLAC 579
>gi|16760679|ref|NP_456296.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|29141562|ref|NP_804904.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56413293|ref|YP_150368.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|168233828|ref|ZP_02658886.1| nickel-dependent hydrogenase family protein [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|168237848|ref|ZP_02662906.1| nickel-dependent hydrogenase superfamily protein [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|168259982|ref|ZP_02681955.1| nickel-dependent hydrogenase family protein [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|168462726|ref|ZP_02696657.1| hydrogenase-1 large chain [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|168820531|ref|ZP_02832531.1| nickel-dependent hydrogenase family protein [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|194445398|ref|YP_002041044.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194470141|ref|ZP_03076125.1| hydrogenase-1 large chain [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194737319|ref|YP_002114822.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197362218|ref|YP_002141855.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|200389907|ref|ZP_03216518.1| nickel-dependent hydrogenase family protein [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|207856705|ref|YP_002243356.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|213161229|ref|ZP_03346939.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213416796|ref|ZP_03349940.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Typhi str. E01-6750]
gi|213426485|ref|ZP_03359235.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|213650578|ref|ZP_03380631.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
gi|213855253|ref|ZP_03383493.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
gi|238912148|ref|ZP_04655985.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
gi|289829002|ref|ZP_06546702.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
gi|25285657|pir||AE0721 hydrogenase-1 large chain (nifE hydrogenase) [imported] -
Salmonella enterica subsp. enterica serovar Typhi
(strain CT18)
gi|16502976|emb|CAD05471.1| hydrogenase-1 large chain (nifE hydrogenase) [Salmonella enterica
subsp. enterica serovar Typhi]
gi|29137189|gb|AAO68753.1| hydrogenase-1 large chain [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56127550|gb|AAV77056.1| hydrogenase-1 large chain (nifE hydrogenase) [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|194404061|gb|ACF64283.1| hydrogenase-1 large chain [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194456505|gb|EDX45344.1| hydrogenase-1 large chain [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194712821|gb|ACF92042.1| hydrogenase-1 large chain [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|195634241|gb|EDX52593.1| hydrogenase-1 large chain [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|197093695|emb|CAR59166.1| hydrogenase-1 large chain (nifE hydrogenase) [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|197289298|gb|EDY28665.1| nickel-dependent hydrogenase superfamily protein [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|199602352|gb|EDZ00898.1| nickel-dependent hydrogenase family protein [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|205332106|gb|EDZ18870.1| nickel-dependent hydrogenase family protein [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|205342691|gb|EDZ29455.1| nickel-dependent hydrogenase family protein [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|205351007|gb|EDZ37638.1| nickel-dependent hydrogenase family protein [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|206708508|emb|CAR32829.1| hydrogenase-1 large chain (nifE hydrogenase) [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|320085710|emb|CBY95488.1| hydrogenase-1 large subunit [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|322616783|gb|EFY13691.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322620406|gb|EFY17272.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322625692|gb|EFY22511.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322626142|gb|EFY22952.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322633748|gb|EFY30488.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322638902|gb|EFY35595.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322640721|gb|EFY37371.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322644107|gb|EFY40652.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322649179|gb|EFY45617.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322655338|gb|EFY51646.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322660905|gb|EFY57136.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322662797|gb|EFY59004.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322667981|gb|EFY64140.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322674257|gb|EFY70351.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322678538|gb|EFY74596.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322683197|gb|EFY79213.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322686890|gb|EFY82868.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|323195219|gb|EFZ80399.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323200189|gb|EFZ85275.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323204517|gb|EFZ89521.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323207366|gb|EFZ92314.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|323213719|gb|EFZ98501.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323217351|gb|EGA02070.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323219231|gb|EGA03726.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323228009|gb|EGA12154.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323231372|gb|EGA15485.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323235812|gb|EGA19891.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323240381|gb|EGA24424.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323245274|gb|EGA29274.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323249845|gb|EGA33744.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323252835|gb|EGA36671.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323258538|gb|EGA42207.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323263298|gb|EGA46834.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323266747|gb|EGA50233.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323268953|gb|EGA52409.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
Length = 597
Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 42/104 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D + V G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNIDEQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
A+E +GI++P +IR + HL++ A
Sbjct: 87 SVYAIEDAIGIQVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130
Score = 88.1 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/234 (12%), Positives = 61/234 (26%), Gaps = 33/234 (14%)
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFS-GVMIRGSGAAWDLRKSQPYECYSELDFDIP- 248
+ ++ + +G + ++ G + L + + Y +
Sbjct: 348 FVDHAWYRYPDDRLGRHPFDGITDPWYNPGDVKGSDTHIQQLNEQERYSWIKAPRWRGHA 407
Query: 249 --IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK- 305
+G Y ESV + + +L + + + A K
Sbjct: 408 MEVGPLARTLIAYHKGDAATIESVDRMMSAL-KLPLSGIQSTLGRILCRAHEAQWAVGKL 466
Query: 306 -----RSMESLIHHF------KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYR 354
R M +L + + + EAP+G G + K
Sbjct: 467 QYFFDRLMTNLKNGDLATANTEKWEPASWPQHCRGIGFTEAPRGALGHWASIR-DQKIEL 525
Query: 355 CKIRAPGYAH---------LQAMEFLCKGHQLA------DVSAILGSLDIVFGE 393
+ P + + A E G Q+A ++ L S D
Sbjct: 526 YQCVVPTTWNASPRDPKKQIGAYEAALMGTQMAIPDQPLEILRTLHSFDPCLAC 579
>gi|319955834|ref|YP_004167097.1| nickel-dependent hydrogenase large subunit [Nitratifractor
salsuginis DSM 16511]
gi|319418238|gb|ADV45348.1| nickel-dependent hydrogenase large subunit [Nitratifractor
salsuginis DSM 16511]
Length = 581
Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats.
Identities = 44/368 (11%), Positives = 78/368 (21%), Gaps = 102/368 (27%)
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIP------PELVEDIGCWCDSFP 181
L + + ++ G H GGV E + + +F
Sbjct: 193 HYLEALDMQREMSKMMAIYGGKMPHPQSIVVGGVTCVQDIINPARNEEFKSLLRKARNFV 252
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF---------------SGVMIRGS- 225
+ G + G GF SGV++ G
Sbjct: 253 KNAYLADIAMAGAVYSDEALDGTGGGLKNYMAYGGFRLDDNEFYKAKTLFPSGVVLNGDL 312
Query: 226 --GAAWDLRK------------SQPYECYSELDFDIPIG-------------KHGDCYDR 258
+D K P + G + +
Sbjct: 313 SKVYPFDQAKVTEDVTHSWYDAPAPQHPFDGTTNPHYTGLAKKSDGMAYLKTDEKYSWIK 372
Query: 259 YLVRMMEMRESVKIIRQCV----------NRLLGKNKVGPVSASDPKIVP---------- 298
V + E + R V ++G + K P
Sbjct: 373 APVYGDQRVEVGPLARMVVGVAAKDERITRYVMGFLERLGGLLGLGKAAPASVLFSTVGR 432
Query: 299 ---------PKRADMKRSMESLIHHFKLYTEGYHV--------PVGEVYAAVEAPKGEFG 341
M ++ L + + Y EAP+G G
Sbjct: 433 TAARAIETEMMADVMMEWIDELAANVAAGDHSTWTEFDFDSVSKDAKGYGLEEAPRGALG 492
Query: 342 VYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLAD------VSAILGS 386
++ K + P + + A E G ++AD + + S
Sbjct: 493 HWVKIK-DGKIENYQAVVPSTWNASPRDGKGRMGAYEAALIGTKVADPEQPLEILRTVHS 551
Query: 387 LDIVFGEV 394
D
Sbjct: 552 FDPCIACA 559
Score = 96.9 bits (240), Expect = 4e-18, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 36/101 (35%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +D V + + RG E +++ + A R+ V
Sbjct: 14 IEGHLRIEAVIDENNVIKDAYASSTMFRGIETILKGRDPRDAGLLAMRICGVCTGTHYQR 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
VE G++IP +L+R L + H ++
Sbjct: 74 SIEGVEHAFGVKIPKNARLVRNLMQGALYLHDHTVHFYHLH 114
>gi|32487321|emb|CAE05896.1| OSJNBa0061C08.3 [Oryza sativa Japonica Group]
Length = 372
Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats.
Identities = 69/231 (29%), Positives = 107/231 (46%), Gaps = 16/231 (6%)
Query: 108 RILSHL-LNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIP 166
R+ SHL L+ + + G +R++L+ + + + ++ DI
Sbjct: 117 RLASHLELHKKDFSSERG----LRRLLGKRQRLLAYLAK-----KNRVRYKKLISQLDIR 167
Query: 167 PELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSG 226
E I + + + L+T N IF +R +G + E+A WG SG M+R SG
Sbjct: 168 ERERELIYD-LFEAATGVIEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASG 226
Query: 227 AAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKV 286
WDLRK YE Y++ D+ + K GD RYLVR+ EMRES+KII+Q V ++ G
Sbjct: 227 IQWDLRKVDLYESYNQFDWKVQWQKEGDSLARYLVRIGEMRESIKIIQQAVEKIPG---- 282
Query: 287 GPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPK 337
GP + + + E K + + + E+YA VEAPK
Sbjct: 283 GPYENLEVRCFKKAKNSEWNDFE-YRFLGKKPSPNFELSKQELYARVEAPK 332
>gi|16765128|ref|NP_460743.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|167993235|ref|ZP_02574330.1| hydrogenase-1 large chain [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|168241374|ref|ZP_02666306.1| nickel-dependent hydrogenase family protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|194448726|ref|YP_002045833.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|197265616|ref|ZP_03165690.1| hydrogenase-1 large chain [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|16420317|gb|AAL20702.1| hydrogenase-1 large subunit [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|194407030|gb|ACF67249.1| hydrogenase-1 large chain [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|197243871|gb|EDY26491.1| hydrogenase-1 large chain [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|205328689|gb|EDZ15453.1| hydrogenase-1 large chain [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|205339116|gb|EDZ25880.1| nickel-dependent hydrogenase family protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|261246973|emb|CBG24790.1| hydrogenase-1 large chain (nifE hydrogenase) [Salmonella enterica
subsp. enterica serovar Typhimurium str. D23580]
gi|267993740|gb|ACY88625.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301158311|emb|CBW17810.1| hydrogenase-1 large chain (nifE hydrogenase) [Salmonella enterica
subsp. enterica serovar Typhimurium str. SL1344]
gi|312912777|dbj|BAJ36751.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|321224420|gb|EFX49483.1| Uptake hydrogenase large subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|323130060|gb|ADX17490.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Typhimurium str. 4/74]
gi|332988674|gb|AEF07657.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
Length = 597
Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats.
Identities = 25/129 (19%), Positives = 52/129 (40%), Gaps = 8/129 (6%)
Query: 2 DKKKSRSFTIN-------FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIE 54
++ +++ +T+N P G +R + +D + V G + RG E +++
Sbjct: 3 NQYQTQGYTVNDAGRRLIVDPIT-RIEGHMRCEVNIDEQNVITNAVSCGTMFRGLEIILQ 61
Query: 55 TKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLL 114
+ A + +R+ V A A+E +GI++P +IR + HL+
Sbjct: 62 GRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIQVPDNANIIRNIMLATLWCHDHLV 121
Query: 115 NVTTQAMDV 123
+ A
Sbjct: 122 HFYQLAGMD 130
Score = 88.1 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/234 (12%), Positives = 61/234 (26%), Gaps = 33/234 (14%)
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFS-GVMIRGSGAAWDLRKSQPYECYSELDFDIP- 248
+ ++ + +G + ++ G + L + + Y +
Sbjct: 348 FVDHAWYRYPDDRLGRHPFDGITDPWYNPGDVKGSDTHIQQLNEQERYSWIKAPRWRGHA 407
Query: 249 --IGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK- 305
+G Y ESV + + +L + + + A K
Sbjct: 408 MEVGPLARTLIAYHKGDAATIESVDRMMSAL-KLPLSGIQSTLGRILCRAHEAQWAVGKL 466
Query: 306 -----RSMESLIHHF------KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYR 354
R M +L + + + EAP+G G + K
Sbjct: 467 QYFFDRLMTNLKNGDLATANTEKWEPASWPQHCRGIGFTEAPRGALGHWASIR-DQKIEL 525
Query: 355 CKIRAPGYAH---------LQAMEFLCKGHQLA------DVSAILGSLDIVFGE 393
+ P + + A E G Q+A ++ L S D
Sbjct: 526 YQCVVPTTWNASPRDPKKQIGAYEAALMGTQMAIPDQPLEILRTLHSFDPCLAC 579
>gi|198245697|ref|YP_002215353.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|197940213|gb|ACH77546.1| hydrogenase-1 large chain [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|326623098|gb|EGE29443.1| hydrogenase-1 large chain [Salmonella enterica subsp. enterica
serovar Dublin str. 3246]
Length = 597
Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 42/104 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D + V G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNIDEQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
A+E +GI++P +IR + HL++ A
Sbjct: 87 SVYAIEDAIGIQVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130
Score = 88.1 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 15/93 (16%), Positives = 25/93 (26%), Gaps = 16/93 (17%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQ 366
+ + EAP+G G + K + P + +
Sbjct: 488 EKWEPASWPQHCRGIGFTEAPRGALGHWASIR-DQKIELYQCVVPTTWNASPRDPKKQIG 546
Query: 367 AMEFLCKGHQLA------DVSAILGSLDIVFGE 393
A E G Q+A ++ L S D
Sbjct: 547 AYEAALMGTQMAIPDQPLEILRTLHSFDPCLAC 579
>gi|94986883|ref|YP_594816.1| hydrogenase-1 large subunit [Lawsonia intracellularis PHE/MN1-00]
gi|94731132|emb|CAJ54494.1| hydrogenase-1 large subunit [Lawsonia intracellularis PHE/MN1-00]
Length = 602
Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats.
Identities = 26/216 (12%), Positives = 54/216 (25%), Gaps = 47/216 (21%)
Query: 225 SGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKN 284
G P +E D + + + M E + R + + +
Sbjct: 367 EGETIPEFSVGPNTKGTETDIKELDERARYSWIKTPRWKGHMMEVGPLPRVLIAYYMKRE 426
Query: 285 ---------------KVGPVSASDPKIVPPKRADMKRS------MESLIHHFK------- 316
V + ++ +I+ + + + LI + K
Sbjct: 427 ETVTAVDEICRQLNVPVTHMCSTLGRIIARSHEAVWAAEKLQYFFDRLIANTKAGDLTVA 486
Query: 317 ---LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH--------- 364
+ + EAP+G G +++ K R + P +
Sbjct: 487 NTTKWEPSTWPKEAKGAGFTEAPRGALGHWVVIKDT-KIDRYQCVVPTTWNAAPRSDSEQ 545
Query: 365 LQAMEFLCKGHQLA------DVSAILGSLDIVFGEV 394
L E LA ++ + S D
Sbjct: 546 LGPYEAALMDTHLAEPEKPLELLRTIHSFDPCLACA 581
Score = 99.6 bits (247), Expect = 7e-19, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 37/100 (37%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR + ++ + G L RG E +++ + A + +R+ V
Sbjct: 27 IEGHLRCEVNINSSGIITNAVSSGTLFRGLEIILKNRDPRDAWAFAERICGVCTGTHALT 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
AVE L IE+P IR + H+++
Sbjct: 87 SIYAVENALQIEVPANANFIRNMMQLALWCHDHIVHFYQL 126
>gi|152990709|ref|YP_001356431.1| Ni-Fe hydrogenase, large subunit [Nitratiruptor sp. SB155-2]
gi|151422570|dbj|BAF70074.1| Ni-Fe hydrogenase, large subunit [Nitratiruptor sp. SB155-2]
Length = 574
Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats.
Identities = 46/360 (12%), Positives = 80/360 (22%), Gaps = 91/360 (25%)
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A+T L + + G H GGV + I + D
Sbjct: 194 AVTHYLQALDLQRDAAKMMAIFGGKNPHPQSIVVGGVTCVQDIKNPARIALYKDLLKGFT 253
Query: 185 NDISDLLTGNRIF------KQRNVNIGTVKLEDAWGWGF---------------SGVMIR 223
I + + G GF SG++I
Sbjct: 254 RFIKGAYLPDIYMAGTMYGDEALDGTGAGLKNYMAYGGFRLQDNGFYKSELLFPSGLVID 313
Query: 224 GSGAAWDLRK------------SQPYECYSELDFDIPIGKHG-------------DCYDR 258
G +D K ++P + G + +
Sbjct: 314 GKYQEFDQEKVAEDVTHSWYHGNEPLHPFDGQTLPNYTGFGKKEGGIAYLDTKGKYSWIK 373
Query: 259 YLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP-------------PKRADMK 305
+ E + R V G ++ K RA
Sbjct: 374 SPIYNDTRVEVGPLARMVVGYTKGDKRISEYVNRFLKNANLPAKVLFSTVGRTAARAIET 433
Query: 306 RSMESLIHHF-----------KLYTEGY-----HVPVGEVYAAVEAPKGEFGVYLISDGG 349
M ++ + L T + Y EAP+G G ++
Sbjct: 434 ELMADMLFDWVDELAANTAAGDLSTWTEFDFDQVSKDAQGYGLEEAPRGALGHWVKIKDS 493
Query: 350 NKPYRCKIRAPGYAH---------LQAMEFLCKGHQLA------DVSAILGSLDIVFGEV 394
K + P + + A E G ++A ++ + S D
Sbjct: 494 -KVENYQAVVPSTWNAAPRDYKNRMGAYEASLIGIKVAKPEEPLEILRTVHSFDPCIACA 552
Score = 98.5 bits (244), Expect = 2e-18, Method: Composition-based stats.
Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 2/103 (1%)
Query: 20 AHGVLRLILELD-GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G LR+ +D + + RG E++++ + R+ V
Sbjct: 14 IEGHLRIEAVIDENNTIVDA-YSSSTMFRGIEEILKGRDPRDCGLLAMRICGVCTGTHYQ 72
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE G+ IP +L+R L + H+++
Sbjct: 73 RSIEAVEHAFGVTIPKNARLVRNLIQGALYLHDHVVHFYHLHA 115
>gi|161503399|ref|YP_001570511.1| hypothetical protein SARI_01473 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160864746|gb|ABX21369.1| hypothetical protein SARI_01473 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 600
Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 38/102 (37%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D V G + RG E +++ + A + +R+ V
Sbjct: 27 IEGHMRCEVNIDNNNVITNAVSTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGTHALT 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI IP IR + + HL++
Sbjct: 87 SIRAVENALGIAIPDNANCIRNMMQATLHVHDHLVHFYHLHA 128
Score = 101 bits (253), Expect = 2e-19, Method: Composition-based stats.
Identities = 36/395 (9%), Positives = 81/395 (20%), Gaps = 114/395 (28%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H ++ A+ L + +++++ + G H + G E
Sbjct: 189 HPAMKLPPEANLLAVAHYLEALDFQKEIVKIHTVFGGKNPHPNWLVGGVPCAINLDETGA 248
Query: 172 DIGCWCDSF------------PSALNDISDLLTGNRIFKQRNVNIGTVKLED-------- 211
+ + D+L +K G + +
Sbjct: 249 VGAVNMERLNLVRSIIQKARQFCEQVYLPDILLIASYYKDWAKIGGGLSSMNLLAYGEFP 308
Query: 212 -----------------------------------------AWGWGFSGVMIRGSGAAWD 230
W G G
Sbjct: 309 DNPNDYSASNLLLPRGAIINGRFDEIHPVDLTAPDEIQEFVTHSWYTYGNGNNDKGLHPW 368
Query: 231 LRKSQPYECYSELDFDIPI------GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKN 284
++P E + + E + R + K
Sbjct: 369 DGLTEPQLVMGEHYKGTKTFIEQLDESAKYSWIKSPRWKGYAMEVGPLARCLIGYHQNKP 428
Query: 285 KVGPVSASDPKIVPPKRADMKRSM---------------------ESLIHHFK------- 316
+ ++ + + ++ + L+ + K
Sbjct: 429 EFKEPVDQLLSVLKLPKEALFSTLGRTAARALESVWAGNTLQYFFDRLMRNLKSGDTATA 488
Query: 317 ---LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH--------- 364
L+ + EAP+G G ++ + + P +
Sbjct: 489 NVTLWEPDTWPTFAKGVGFSEAPRGALGHWIKI-ENQRIDSYQCVVPTTWNAGPRDDKGQ 547
Query: 365 LQAMEFLCKGHQLA------DVSAILGSLDIVFGE 393
+ A E G +LA ++ L S D
Sbjct: 548 IGAYEAALMGTKLAVPDQPLEILRTLHSFDPCLAC 582
>gi|323168160|gb|EFZ53847.1| uptake hydrogenase large subunit [Shigella sonnei 53G]
Length = 567
Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ +V + G + RG E++++ + A R+ V +
Sbjct: 13 IEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALS 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A E L I++P+ Q IR + H+++ +
Sbjct: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113
Score = 97.7 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 19/91 (20%)
Query: 322 YHVPV-GE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAME 369
++P GE +EAP+G +++ + P + + E
Sbjct: 461 PNIPATGEFKGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYE 519
Query: 370 FLCKGHQLAD------VSAILGSLDIVFGEV 394
G +AD V + S D
Sbjct: 520 QSLVGTPVADPNKPLEVVRTIHSFDPCMACA 550
>gi|332998939|gb|EGK18530.1| uptake hydrogenase large subunit [Shigella flexneri VA-6]
Length = 567
Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ +V + G + RG E++++ + A R+ V +
Sbjct: 13 IEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALS 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A E L I++P+ Q IR + H+++ +
Sbjct: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113
Score = 97.7 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 19/91 (20%)
Query: 322 YHVPV-GE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAME 369
++P GE +EAP+G +++ + P + + E
Sbjct: 461 PNIPATGEFKGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYE 519
Query: 370 FLCKGHQLAD------VSAILGSLDIVFGEV 394
G +AD V + S D
Sbjct: 520 QSLVGTPVADPNKPLEVVRTIHSFDPCMACA 550
>gi|323960955|gb|EGB56574.1| nickel-dependent hydrogenase [Escherichia coli H489]
Length = 567
Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ +V + G + RG E++++ + A R+ V +
Sbjct: 13 IEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALS 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A E L I++P+ Q IR + H+++ +
Sbjct: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113
Score = 97.7 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 19/91 (20%)
Query: 322 YHVPV-GE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAME 369
++P GE +EAP+G +++ + P + + E
Sbjct: 461 PNIPATGEFKGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYE 519
Query: 370 FLCKGHQLAD------VSAILGSLDIVFGEV 394
G +AD V + S D
Sbjct: 520 QSLVGTPVADPNKPLEVVRTIHSFDPCMACA 550
>gi|238920545|ref|YP_002934060.1| hydrogenase 2 large subunit [Edwardsiella ictaluri 93-146]
gi|238870114|gb|ACR69825.1| hydrogenase-2 large chain (HYD2) [Edwardsiella ictaluri 93-146]
Length = 567
Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats.
Identities = 26/129 (20%), Positives = 45/129 (34%), Gaps = 5/129 (3%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ V + G + RG E +++ A R+ V A
Sbjct: 13 IEGHLRIDCEIENGKVTKA-WSSGTMWRGMEDIVKGNDPRDAWMIVQRICGVCTTIHAIA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKL 139
AVE +G ++P+ Q IR L I H+++ + A+ +
Sbjct: 72 SVRAVESAVGAKVPVNAQYIRNLILSAHSIHDHIVHFYQLS----AMDWVDITSALKADP 127
Query: 140 MVFYERASG 148
G
Sbjct: 128 NKCEAMLQG 136
Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats.
Identities = 19/129 (14%), Positives = 32/129 (24%), Gaps = 22/129 (17%)
Query: 287 GPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHV------PVGEVYAAVEAPKGEF 340
G + + K M + + + K Y EAP+G
Sbjct: 423 GRIIGRAVRCCVLKDTLMMQWQALIDNIGKGDHVAYIPAEIDPNKEYRGVGFEEAPRGAL 482
Query: 341 GVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VSAILG 385
+++ G K + P + E G +AD V +
Sbjct: 483 SHWIVIKG-GKIANYQAVVPSTWNSGPRNGQDEPGPYEQALVGTPVADINKPLEVVRTVH 541
Query: 386 SLDIVFGEV 394
S D
Sbjct: 542 SFDPCMSCA 550
>gi|325498549|gb|EGC96408.1| hydrogenase 2 large subunit [Escherichia fergusonii ECD227]
Length = 567
Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ +V + G + RG E++++ + A R+ V +
Sbjct: 13 IEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALS 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A E L I++P+ Q IR + H+++ +
Sbjct: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113
Score = 97.7 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 19/91 (20%)
Query: 322 YHVPV-GE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAME 369
++P GE +EAP+G +++ + P + + E
Sbjct: 461 PNIPATGEFKGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYE 519
Query: 370 FLCKGHQLAD------VSAILGSLDIVFGEV 394
G +AD V + S D
Sbjct: 520 QSLVGTPVADPNKPLEVVRTIHSFDPCMACA 550
>gi|301325660|ref|ZP_07219121.1| nickel-dependent hydrogenase [Escherichia coli MS 78-1]
gi|300847515|gb|EFK75275.1| nickel-dependent hydrogenase [Escherichia coli MS 78-1]
gi|323966525|gb|EGB61958.1| nickel-dependent hydrogenase [Escherichia coli M863]
gi|323978930|gb|EGB74010.1| nickel-dependent hydrogenase [Escherichia coli TW10509]
gi|327251778|gb|EGE63464.1| uptake hydrogenase large subunit [Escherichia coli STEC_7v]
Length = 567
Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ +V + G + RG E++++ + A R+ V +
Sbjct: 13 IEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALS 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A E L I++P+ Q IR + H+++ +
Sbjct: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113
Score = 97.7 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 19/91 (20%)
Query: 322 YHVPV-GE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAME 369
++P GE +EAP+G +++ + P + + E
Sbjct: 461 PNIPATGEFKGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYE 519
Query: 370 FLCKGHQLAD------VSAILGSLDIVFGEV 394
G +AD V + S D
Sbjct: 520 QSLVGTPVADPNKPLEVVRTIHSFDPCMACA 550
>gi|300905877|ref|ZP_07123610.1| nickel-dependent hydrogenase [Escherichia coli MS 84-1]
gi|301304178|ref|ZP_07210294.1| nickel-dependent hydrogenase [Escherichia coli MS 124-1]
gi|300402346|gb|EFJ85884.1| nickel-dependent hydrogenase [Escherichia coli MS 84-1]
gi|300840591|gb|EFK68351.1| nickel-dependent hydrogenase [Escherichia coli MS 124-1]
gi|315256895|gb|EFU36863.1| nickel-dependent hydrogenase [Escherichia coli MS 85-1]
Length = 567
Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ +V + G + RG E++++ + A R+ V +
Sbjct: 13 IEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALS 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A E L I++P+ Q IR + H+++ +
Sbjct: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113
Score = 97.7 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 19/91 (20%)
Query: 322 YHVPV-GE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAME 369
++P GE +EAP+G +++ + P + + E
Sbjct: 461 PNIPATGEFKGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYE 519
Query: 370 FLCKGHQLAD------VSAILGSLDIVFGEV 394
G +AD V + S D
Sbjct: 520 QSLVGTPVADPNKPLEVVRTIHSFDPCMACA 550
>gi|82778237|ref|YP_404586.1| hydrogenase 2 large subunit [Shigella dysenteriae Sd197]
gi|309785174|ref|ZP_07679805.1| uptake hydrogenase large subunit [Shigella dysenteriae 1617]
gi|81242385|gb|ABB63095.1| probable large subunit, hydrogenase-2 [Shigella dysenteriae Sd197]
gi|308926294|gb|EFP71770.1| uptake hydrogenase large subunit [Shigella dysenteriae 1617]
Length = 567
Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ +V + G + RG E++++ + A R+ V +
Sbjct: 13 IEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALS 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A E L I++P+ Q IR + H+++ +
Sbjct: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113
Score = 97.7 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 19/91 (20%)
Query: 322 YHVPV-GE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAME 369
++P GE +EAP+G +++ + P + + E
Sbjct: 461 PNIPATGEFKGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYE 519
Query: 370 FLCKGHQLAD------VSAILGSLDIVFGEV 394
G +AD V + S D
Sbjct: 520 QSLVGTPVADPNKPLEVVRTIHSFDPCMACA 550
>gi|194431679|ref|ZP_03063970.1| hydrogenase-2, large subunit [Shigella dysenteriae 1012]
gi|291284377|ref|YP_003501195.1| Hydrogenase-2 large chain precursor [Escherichia coli O55:H7 str.
CB9615]
gi|194420035|gb|EDX36113.1| hydrogenase-2, large subunit [Shigella dysenteriae 1012]
gi|209759834|gb|ACI78229.1| hydrogenase-2 large subunit HybC [Escherichia coli]
gi|290764250|gb|ADD58211.1| Hydrogenase-2 large chain precursor [Escherichia coli O55:H7 str.
CB9615]
Length = 567
Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ +V + G + RG E++++ + A R+ V +
Sbjct: 13 IEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALS 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A E L I++P+ Q IR + H+++ +
Sbjct: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113
Score = 97.7 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 19/91 (20%)
Query: 322 YHVPV-GE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAME 369
++P GE +EAP+G +++ + P + + E
Sbjct: 461 PNIPATGEFKGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYE 519
Query: 370 FLCKGHQLAD------VSAILGSLDIVFGEV 394
G +AD V + S D
Sbjct: 520 QSLVGTPVADPNKPLEVVRTIHSFDPCMACA 550
>gi|331654605|ref|ZP_08355605.1| hydrogenase-2 large chain (NiFe hydrogenase)(Membrane-bound
hydrogenase 2 large subunit) (HYD2) [Escherichia coli
M718]
gi|331047987|gb|EGI20064.1| hydrogenase-2 large chain (NiFe hydrogenase)(Membrane-bound
hydrogenase 2 large subunit) (HYD2) [Escherichia coli
M718]
Length = 567
Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ +V + G + RG E++++ + A R+ V +
Sbjct: 13 IEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALS 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A E L I++P+ Q IR + H+++ +
Sbjct: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113
Score = 97.7 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 19/91 (20%)
Query: 322 YHVPV-GE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAME 369
++P GE +EAP+G +++ + P + + E
Sbjct: 461 PNIPATGEFKGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYE 519
Query: 370 FLCKGHQLAD------VSAILGSLDIVFGEV 394
G +AD V + S D
Sbjct: 520 QSLVGTPVADPNKPLEVVRTIHSFDPCMACA 550
>gi|300993134|ref|ZP_07180220.1| nickel-dependent hydrogenase [Escherichia coli MS 200-1]
gi|300305149|gb|EFJ59669.1| nickel-dependent hydrogenase [Escherichia coli MS 200-1]
Length = 567
Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ +V + G + RG E++++ + A R+ V +
Sbjct: 13 IEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALS 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A E L I++P+ Q IR + H+++ +
Sbjct: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113
Score = 97.7 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 19/91 (20%)
Query: 322 YHVPV-GE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAME 369
++P GE +EAP+G +++ + P + + E
Sbjct: 461 PNIPATGEFKGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYE 519
Query: 370 FLCKGHQLAD------VSAILGSLDIVFGEV 394
G +AD V + S D
Sbjct: 520 QSLVGTPVADPNKPLEVVRTIHSFDPCMACA 550
>gi|297520571|ref|ZP_06938957.1| hydrogenase 2 large subunit [Escherichia coli OP50]
Length = 556
Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ +V + G + RG E++++ + A R+ V +
Sbjct: 2 IEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALS 60
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A E L I++P+ Q IR + H+++ +
Sbjct: 61 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 102
Score = 97.7 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 19/91 (20%)
Query: 322 YHVPV-GE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAME 369
++P GE +EAP+G +++ + P + + E
Sbjct: 450 PNIPATGEFKGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYE 508
Query: 370 FLCKGHQLAD------VSAILGSLDIVFGEV 394
G +AD V + S D
Sbjct: 509 QSLVGTPVADPNKPLEVVRTIHSFDPCMACA 539
>gi|15803539|ref|NP_289572.1| hydrogenase 2 large subunit [Escherichia coli O157:H7 EDL933]
gi|15833133|ref|NP_311906.1| hydrogenase 2 large subunit [Escherichia coli O157:H7 str. Sakai]
gi|16130894|ref|NP_417468.1| hydrogenase 2, large subunit [Escherichia coli str. K-12 substr.
MG1655]
gi|24114302|ref|NP_708812.1| hydrogenase 2 large subunit [Shigella flexneri 2a str. 301]
gi|30064349|ref|NP_838520.1| hydrogenase 2 large subunit [Shigella flexneri 2a str. 2457T]
gi|74313539|ref|YP_311958.1| hydrogenase 2 large subunit [Shigella sonnei Ss046]
gi|82545268|ref|YP_409215.1| hydrogenase 2 large subunit [Shigella boydii Sb227]
gi|89109769|ref|AP_003549.1| hydrogenase 2, large subunit [Escherichia coli str. K-12 substr.
W3110]
gi|91212408|ref|YP_542394.1| hydrogenase 2 large subunit [Escherichia coli UTI89]
gi|117625299|ref|YP_854500.1| hydrogenase 2 large subunit [Escherichia coli APEC O1]
gi|157157766|ref|YP_001464460.1| hydrogenase 2 large subunit [Escherichia coli E24377A]
gi|157162474|ref|YP_001459792.1| hydrogenase 2 large subunit [Escherichia coli HS]
gi|168747501|ref|ZP_02772523.1| hydrogenase-2, large subunit [Escherichia coli O157:H7 str. EC4113]
gi|168753958|ref|ZP_02778965.1| hydrogenase-2, large subunit [Escherichia coli O157:H7 str. EC4401]
gi|168760149|ref|ZP_02785156.1| hydrogenase-2, large subunit [Escherichia coli O157:H7 str. EC4501]
gi|168767012|ref|ZP_02792019.1| hydrogenase-2, large subunit [Escherichia coli O157:H7 str. EC4486]
gi|168773354|ref|ZP_02798361.1| hydrogenase-2, large subunit [Escherichia coli O157:H7 str. EC4196]
gi|168781865|ref|ZP_02806872.1| hydrogenase-2, large subunit [Escherichia coli O157:H7 str. EC4076]
gi|168785863|ref|ZP_02810870.1| hydrogenase-2, large subunit [Escherichia coli O157:H7 str. EC869]
gi|168797581|ref|ZP_02822588.1| hydrogenase-2, large subunit [Escherichia coli O157:H7 str. EC508]
gi|170082542|ref|YP_001731862.1| hydrogenase 2, large subunit [Escherichia coli str. K-12 substr.
DH10B]
gi|170680167|ref|YP_001745260.1| hydrogenase 2 large subunit [Escherichia coli SMS-3-5]
gi|170765857|ref|ZP_02900668.1| hydrogenase-2, large subunit [Escherichia albertii TW07627]
gi|187732484|ref|YP_001881757.1| hydrogenase 2 large subunit [Shigella boydii CDC 3083-94]
gi|188496093|ref|ZP_03003363.1| hydrogenase-2, large subunit [Escherichia coli 53638]
gi|191167563|ref|ZP_03029375.1| hydrogenase-2, large subunit [Escherichia coli B7A]
gi|193061971|ref|ZP_03043067.1| hydrogenase-2, large subunit [Escherichia coli E22]
gi|193067343|ref|ZP_03048311.1| hydrogenase-2, large subunit [Escherichia coli E110019]
gi|194426334|ref|ZP_03058889.1| hydrogenase-2, large subunit [Escherichia coli B171]
gi|194436663|ref|ZP_03068763.1| hydrogenase-2, large subunit [Escherichia coli 101-1]
gi|195937140|ref|ZP_03082522.1| hydrogenase 2 large subunit [Escherichia coli O157:H7 str. EC4024]
gi|208807046|ref|ZP_03249383.1| hydrogenase-2, large subunit [Escherichia coli O157:H7 str. EC4206]
gi|208812899|ref|ZP_03254228.1| hydrogenase-2, large subunit [Escherichia coli O157:H7 str. EC4045]
gi|208818206|ref|ZP_03258526.1| hydrogenase-2, large subunit [Escherichia coli O157:H7 str. EC4042]
gi|209397380|ref|YP_002272473.1| hydrogenase-2, large subunit [Escherichia coli O157:H7 str. EC4115]
gi|209920470|ref|YP_002294554.1| hydrogenase 2 large subunit [Escherichia coli SE11]
gi|215488320|ref|YP_002330751.1| hydrogenase 2 large subunit [Escherichia coli O127:H6 str.
E2348/69]
gi|217327377|ref|ZP_03443460.1| hydrogenase-2, large subunit [Escherichia coli O157:H7 str.
TW14588]
gi|218550245|ref|YP_002384036.1| hydrogenase 2 large subunit [Escherichia fergusonii ATCC 35469]
gi|218555568|ref|YP_002388481.1| hydrogenase 2 large subunit [Escherichia coli IAI1]
gi|218560069|ref|YP_002392982.1| hydrogenase 2 large subunit [Escherichia coli S88]
gi|218696704|ref|YP_002404371.1| hydrogenase 2 large subunit [Escherichia coli 55989]
gi|218701768|ref|YP_002409397.1| hydrogenase 2 large subunit [Escherichia coli IAI39]
gi|218706621|ref|YP_002414140.1| hydrogenase 2 large subunit [Escherichia coli UMN026]
gi|237706259|ref|ZP_04536740.1| hydrogenase 2 large subunit [Escherichia sp. 3_2_53FAA]
gi|238902112|ref|YP_002927908.1| hydrogenase 2, large subunit [Escherichia coli BW2952]
gi|253772167|ref|YP_003034998.1| hydrogenase 2 large subunit [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|254038163|ref|ZP_04872221.1| hydrogenase-2 large subunit [Escherichia sp. 1_1_43]
gi|254162948|ref|YP_003046056.1| hydrogenase 2 large subunit [Escherichia coli B str. REL606]
gi|254794951|ref|YP_003079788.1| hydrogenase 2 large subunit [Escherichia coli O157:H7 str. TW14359]
gi|256019082|ref|ZP_05432947.1| hydrogenase 2 large subunit [Shigella sp. D9]
gi|256024420|ref|ZP_05438285.1| hydrogenase 2 large subunit [Escherichia sp. 4_1_40B]
gi|260845755|ref|YP_003223533.1| hydrogenase 2, large subunit [Escherichia coli O103:H2 str. 12009]
gi|260857134|ref|YP_003231025.1| hydrogenase 2, large subunit [Escherichia coli O26:H11 str. 11368]
gi|260869755|ref|YP_003236157.1| hydrogenase 2, large subunit [Escherichia coli O111:H- str. 11128]
gi|261228010|ref|ZP_05942291.1| hydrogenase 2, large subunit [Escherichia coli O157:H7 str.
FRIK2000]
gi|261254867|ref|ZP_05947400.1| hydrogenase 2, large subunit [Escherichia coli O157:H7 str.
FRIK966]
gi|293406611|ref|ZP_06650537.1| hydrogenase 2 large subunit [Escherichia coli FVEC1412]
gi|293412372|ref|ZP_06655095.1| hydrogenase 2 large subunit [Escherichia coli B354]
gi|293416439|ref|ZP_06659078.1| hydrogenase large subunit [Escherichia coli B185]
gi|293449343|ref|ZP_06663764.1| hydrogenase 2 large subunit [Escherichia coli B088]
gi|298382350|ref|ZP_06991947.1| hydrogenase 2 large subunit [Escherichia coli FVEC1302]
gi|300815522|ref|ZP_07095746.1| nickel-dependent hydrogenase [Escherichia coli MS 107-1]
gi|300821579|ref|ZP_07101725.1| nickel-dependent hydrogenase [Escherichia coli MS 119-7]
gi|300897098|ref|ZP_07115560.1| nickel-dependent hydrogenase [Escherichia coli MS 198-1]
gi|300923652|ref|ZP_07139680.1| nickel-dependent hydrogenase [Escherichia coli MS 182-1]
gi|300931880|ref|ZP_07147177.1| nickel-dependent hydrogenase [Escherichia coli MS 187-1]
gi|300935654|ref|ZP_07150627.1| nickel-dependent hydrogenase [Escherichia coli MS 21-1]
gi|300950800|ref|ZP_07164686.1| nickel-dependent hydrogenase [Escherichia coli MS 116-1]
gi|300958377|ref|ZP_07170518.1| nickel-dependent hydrogenase [Escherichia coli MS 175-1]
gi|301017310|ref|ZP_07182074.1| nickel-dependent hydrogenase [Escherichia coli MS 69-1]
gi|301019946|ref|ZP_07184081.1| nickel-dependent hydrogenase [Escherichia coli MS 196-1]
gi|301643639|ref|ZP_07243680.1| nickel-dependent hydrogenase [Escherichia coli MS 146-1]
gi|307139684|ref|ZP_07499040.1| hydrogenase 2 large subunit [Escherichia coli H736]
gi|307310371|ref|ZP_07590019.1| Cytochrome-c3 hydrogenase [Escherichia coli W]
gi|309793559|ref|ZP_07687985.1| nickel-dependent hydrogenase [Escherichia coli MS 145-7]
gi|331643696|ref|ZP_08344827.1| hydrogenase-2 large chain (NiFe hydrogenase)(Membrane-bound
hydrogenase 2 large subunit) (HYD2) [Escherichia coli
H736]
gi|331648785|ref|ZP_08349873.1| hydrogenase-2 large chain (NiFe hydrogenase)(Membrane-bound
hydrogenase 2 large subunit) (HYD2) [Escherichia coli
M605]
gi|331664611|ref|ZP_08365517.1| hydrogenase-2 large chain (NiFe hydrogenase)(Membrane-bound
hydrogenase 2 large subunit) (HYD2) [Escherichia coli
TA143]
gi|331669982|ref|ZP_08370827.1| hydrogenase-2 large chain (NiFe hydrogenase)(Membrane-bound
hydrogenase 2 large subunit) (HYD2) [Escherichia coli
TA271]
gi|331674549|ref|ZP_08375309.1| hydrogenase-2 large chain (NiFe hydrogenase)(Membrane-bound
hydrogenase 2 large subunit) (HYD2) [Escherichia coli
TA280]
gi|331679070|ref|ZP_08379742.1| hydrogenase-2 large chain (NiFe hydrogenase)(Membrane-bound
hydrogenase 2 large subunit) (HYD2) [Escherichia coli
H591]
gi|331684640|ref|ZP_08385232.1| hydrogenase-2 large chain (NiFe hydrogenase)(Membrane-bound
hydrogenase 2 large subunit) (HYD2) [Escherichia coli
H299]
gi|332280185|ref|ZP_08392598.1| hydrogenase-2 large subunit [Shigella sp. D9]
gi|82593030|sp|P0ACE1|MBHM_ECO57 RecName: Full=Hydrogenase-2 large chain; Short=HYD2; AltName:
Full=Membrane-bound hydrogenase 2 large subunit;
AltName: Full=NiFe hydrogenase; Flags: Precursor
gi|82593031|sp|P0ACE0|MBHM_ECOLI RecName: Full=Hydrogenase-2 large chain; Short=HYD2; AltName:
Full=Membrane-bound hydrogenase 2 large subunit;
AltName: Full=NiFe hydrogenase; Flags: Precursor
gi|82593032|sp|P0ACE2|MBHM_SHIFL RecName: Full=Hydrogenase-2 large chain; Short=HYD2; AltName:
Full=Membrane-bound hydrogenase 2 large subunit;
AltName: Full=NiFe hydrogenase; Flags: Precursor
gi|12517558|gb|AAG58131.1|AE005529_9 probable large subunit, hydrogenase-2 [Escherichia coli O157:H7
str. EDL933]
gi|544485|gb|AAA21591.1| hydrogenase-2 large subunit [Escherichia coli]
gi|882523|gb|AAA69161.1| hydrogenase-2 large subunit [Escherichia coli str. K-12 substr.
MG1655]
gi|1789368|gb|AAC76030.1| hydrogenase 2, large subunit [Escherichia coli str. K-12 substr.
MG1655]
gi|13363351|dbj|BAB37302.1| hydrogenase-2 large subunit HybC [Escherichia coli O157:H7 str.
Sakai]
gi|24053459|gb|AAN44519.1| hydrogenase-2 large subunit [Shigella flexneri 2a str. 301]
gi|30042606|gb|AAP18330.1| hydrogenase-2 large subunit [Shigella flexneri 2a str. 2457T]
gi|73857016|gb|AAZ89723.1| probable large subunit, hydrogenase-2 [Shigella sonnei Ss046]
gi|81246679|gb|ABB67387.1| probable large subunit, hydrogenase-2 [Shigella boydii Sb227]
gi|85675802|dbj|BAE77055.1| hydrogenase 2, large subunit [Escherichia coli str. K12 substr.
W3110]
gi|91073982|gb|ABE08863.1| probable large subunit, hydrogenase-2 [Escherichia coli UTI89]
gi|115514423|gb|ABJ02498.1| hydrogenase 2, large subunit [Escherichia coli APEC O1]
gi|157068154|gb|ABV07409.1| hydrogenase-2, large subunit [Escherichia coli HS]
gi|157079796|gb|ABV19504.1| hydrogenase-2, large subunit [Escherichia coli E24377A]
gi|169890377|gb|ACB04084.1| hydrogenase 2, large subunit [Escherichia coli str. K-12 substr.
DH10B]
gi|170125003|gb|EDS93934.1| hydrogenase-2, large subunit [Escherichia albertii TW07627]
gi|170517885|gb|ACB16063.1| hydrogenase-2, large subunit [Escherichia coli SMS-3-5]
gi|187429476|gb|ACD08750.1| hydrogenase-2, large subunit [Shigella boydii CDC 3083-94]
gi|187770800|gb|EDU34644.1| hydrogenase-2, large subunit [Escherichia coli O157:H7 str. EC4196]
gi|188017943|gb|EDU56065.1| hydrogenase-2, large subunit [Escherichia coli O157:H7 str. EC4113]
gi|188491292|gb|EDU66395.1| hydrogenase-2, large subunit [Escherichia coli 53638]
gi|189000629|gb|EDU69615.1| hydrogenase-2, large subunit [Escherichia coli O157:H7 str. EC4076]
gi|189358646|gb|EDU77065.1| hydrogenase-2, large subunit [Escherichia coli O157:H7 str. EC4401]
gi|189363613|gb|EDU82032.1| hydrogenase-2, large subunit [Escherichia coli O157:H7 str. EC4486]
gi|189369356|gb|EDU87772.1| hydrogenase-2, large subunit [Escherichia coli O157:H7 str. EC4501]
gi|189373959|gb|EDU92375.1| hydrogenase-2, large subunit [Escherichia coli O157:H7 str. EC869]
gi|189379798|gb|EDU98214.1| hydrogenase-2, large subunit [Escherichia coli O157:H7 str. EC508]
gi|190902420|gb|EDV62157.1| hydrogenase-2, large subunit [Escherichia coli B7A]
gi|192932191|gb|EDV84789.1| hydrogenase-2, large subunit [Escherichia coli E22]
gi|192959300|gb|EDV89735.1| hydrogenase-2, large subunit [Escherichia coli E110019]
gi|194415642|gb|EDX31909.1| hydrogenase-2, large subunit [Escherichia coli B171]
gi|194424145|gb|EDX40132.1| hydrogenase-2, large subunit [Escherichia coli 101-1]
gi|208726847|gb|EDZ76448.1| hydrogenase-2, large subunit [Escherichia coli O157:H7 str. EC4206]
gi|208734176|gb|EDZ82863.1| hydrogenase-2, large subunit [Escherichia coli O157:H7 str. EC4045]
gi|208738329|gb|EDZ86011.1| hydrogenase-2, large subunit [Escherichia coli O157:H7 str. EC4042]
gi|209158780|gb|ACI36213.1| hydrogenase-2, large subunit [Escherichia coli O157:H7 str. EC4115]
gi|209759828|gb|ACI78226.1| hydrogenase-2 large subunit HybC [Escherichia coli]
gi|209759830|gb|ACI78227.1| hydrogenase-2 large subunit HybC [Escherichia coli]
gi|209759832|gb|ACI78228.1| hydrogenase-2 large subunit HybC [Escherichia coli]
gi|209759836|gb|ACI78230.1| hydrogenase-2 large subunit HybC [Escherichia coli]
gi|209913729|dbj|BAG78803.1| hydrogenase-2 large subunit [Escherichia coli SE11]
gi|215266392|emb|CAS10829.1| hydrogenase 2, large subunit [Escherichia coli O127:H6 str.
E2348/69]
gi|217319744|gb|EEC28169.1| hydrogenase-2, large subunit [Escherichia coli O157:H7 str.
TW14588]
gi|218353436|emb|CAU99512.1| hydrogenase 2, large subunit [Escherichia coli 55989]
gi|218357786|emb|CAQ90430.1| hydrogenase 2, large subunit [Escherichia fergusonii ATCC 35469]
gi|218362336|emb|CAQ99958.1| hydrogenase 2, large subunit [Escherichia coli IAI1]
gi|218366838|emb|CAR04608.1| hydrogenase 2, large subunit [Escherichia coli S88]
gi|218371754|emb|CAR19607.1| hydrogenase 2, large subunit [Escherichia coli IAI39]
gi|218433718|emb|CAR14635.1| hydrogenase 2, large subunit [Escherichia coli UMN026]
gi|226839787|gb|EEH71808.1| hydrogenase-2 large subunit [Escherichia sp. 1_1_43]
gi|226899299|gb|EEH85558.1| hydrogenase 2 large subunit [Escherichia sp. 3_2_53FAA]
gi|238861451|gb|ACR63449.1| hydrogenase 2, large subunit [Escherichia coli BW2952]
gi|242378550|emb|CAQ33336.1| hydrogenase 2, large subunit, subunit of hydrogenase 2 [Escherichia
coli BL21(DE3)]
gi|253323211|gb|ACT27813.1| Cytochrome-c3 hydrogenase [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|253974849|gb|ACT40520.1| hydrogenase 2, large subunit [Escherichia coli B str. REL606]
gi|253979004|gb|ACT44674.1| hydrogenase 2, large subunit [Escherichia coli BL21(DE3)]
gi|254594351|gb|ACT73712.1| hydrogenase 2, large subunit [Escherichia coli O157:H7 str.
TW14359]
gi|257755783|dbj|BAI27285.1| hydrogenase 2, large subunit [Escherichia coli O26:H11 str. 11368]
gi|257760902|dbj|BAI32399.1| hydrogenase 2, large subunit [Escherichia coli O103:H2 str. 12009]
gi|257766111|dbj|BAI37606.1| hydrogenase 2, large subunit [Escherichia coli O111:H- str. 11128]
gi|260447964|gb|ACX38386.1| nickel-dependent hydrogenase large subunit [Escherichia coli DH1]
gi|281180035|dbj|BAI56365.1| hydrogenase-2 large subunit [Escherichia coli SE15]
gi|281602385|gb|ADA75369.1| Hydrogenase-2 large chain precursor [Shigella flexneri 2002017]
gi|284923021|emb|CBG36113.1| hydrogenase-2 large subunit [Escherichia coli 042]
gi|291322433|gb|EFE61862.1| hydrogenase 2 large subunit [Escherichia coli B088]
gi|291426617|gb|EFE99649.1| hydrogenase 2 large subunit [Escherichia coli FVEC1412]
gi|291431795|gb|EFF04778.1| hydrogenase large subunit [Escherichia coli B185]
gi|291469143|gb|EFF11634.1| hydrogenase 2 large subunit [Escherichia coli B354]
gi|294492391|gb|ADE91147.1| hydrogenase-2, large subunit [Escherichia coli IHE3034]
gi|298277490|gb|EFI19006.1| hydrogenase 2 large subunit [Escherichia coli FVEC1302]
gi|299882044|gb|EFI90255.1| nickel-dependent hydrogenase [Escherichia coli MS 196-1]
gi|300314961|gb|EFJ64745.1| nickel-dependent hydrogenase [Escherichia coli MS 175-1]
gi|300359106|gb|EFJ74976.1| nickel-dependent hydrogenase [Escherichia coli MS 198-1]
gi|300400283|gb|EFJ83821.1| nickel-dependent hydrogenase [Escherichia coli MS 69-1]
gi|300420093|gb|EFK03404.1| nickel-dependent hydrogenase [Escherichia coli MS 182-1]
gi|300449895|gb|EFK13515.1| nickel-dependent hydrogenase [Escherichia coli MS 116-1]
gi|300459154|gb|EFK22647.1| nickel-dependent hydrogenase [Escherichia coli MS 21-1]
gi|300460303|gb|EFK23796.1| nickel-dependent hydrogenase [Escherichia coli MS 187-1]
gi|300525717|gb|EFK46786.1| nickel-dependent hydrogenase [Escherichia coli MS 119-7]
gi|300531451|gb|EFK52513.1| nickel-dependent hydrogenase [Escherichia coli MS 107-1]
gi|301078023|gb|EFK92829.1| nickel-dependent hydrogenase [Escherichia coli MS 146-1]
gi|306909266|gb|EFN39761.1| Cytochrome-c3 hydrogenase [Escherichia coli W]
gi|307625402|gb|ADN69706.1| hydrogenase 2 large subunit [Escherichia coli UM146]
gi|308122516|gb|EFO59778.1| nickel-dependent hydrogenase [Escherichia coli MS 145-7]
gi|313648112|gb|EFS12558.1| uptake hydrogenase large subunit [Shigella flexneri 2a str. 2457T]
gi|315062313|gb|ADT76640.1| hydrogenase 2, large subunit [Escherichia coli W]
gi|315137591|dbj|BAJ44750.1| hydrogenase 2 large subunit [Escherichia coli DH1]
gi|315288772|gb|EFU48170.1| nickel-dependent hydrogenase [Escherichia coli MS 110-3]
gi|315614997|gb|EFU95635.1| uptake hydrogenase large subunit [Escherichia coli 3431]
gi|320175673|gb|EFW50762.1| Uptake hydrogenase large subunit [Shigella dysenteriae CDC 74-1112]
gi|320180974|gb|EFW55895.1| Uptake hydrogenase large subunit [Shigella boydii ATCC 9905]
gi|320184205|gb|EFW59021.1| Uptake hydrogenase large subunit [Shigella flexneri CDC 796-83]
gi|320189350|gb|EFW64009.1| Uptake hydrogenase large subunit [Escherichia coli O157:H7 str.
EC1212]
gi|320201910|gb|EFW76485.1| Uptake hydrogenase large subunit [Escherichia coli EC4100B]
gi|320640071|gb|EFX09643.1| hydrogenase 2 large subunit [Escherichia coli O157:H7 str. G5101]
gi|320645369|gb|EFX14378.1| hydrogenase 2 large subunit [Escherichia coli O157:H- str. 493-89]
gi|320650682|gb|EFX19139.1| hydrogenase 2 large subunit [Escherichia coli O157:H- str. H 2687]
gi|320656376|gb|EFX24283.1| hydrogenase 2 large subunit [Escherichia coli O55:H7 str. 3256-97
TW 07815]
gi|320661749|gb|EFX29157.1| hydrogenase 2 large subunit [Escherichia coli O55:H7 str. USDA
5905]
gi|323154693|gb|EFZ40892.1| uptake hydrogenase large subunit [Escherichia coli EPECa14]
gi|323163050|gb|EFZ48883.1| uptake hydrogenase large subunit [Escherichia coli E128010]
gi|323173761|gb|EFZ59390.1| uptake hydrogenase large subunit [Escherichia coli LT-68]
gi|323178704|gb|EFZ64280.1| uptake hydrogenase large subunit [Escherichia coli 1180]
gi|323183585|gb|EFZ68982.1| uptake hydrogenase large subunit [Escherichia coli 1357]
gi|323188574|gb|EFZ73859.1| uptake hydrogenase large subunit [Escherichia coli RN587/1]
gi|323377102|gb|ADX49370.1| Cytochrome-c3 hydrogenase [Escherichia coli KO11]
gi|323936001|gb|EGB32296.1| nickel-dependent hydrogenase [Escherichia coli E1520]
gi|323946757|gb|EGB42777.1| nickel-dependent hydrogenase [Escherichia coli H120]
gi|323951483|gb|EGB47358.1| nickel-dependent hydrogenase [Escherichia coli H252]
gi|323957855|gb|EGB53569.1| nickel-dependent hydrogenase [Escherichia coli H263]
gi|323971877|gb|EGB67102.1| nickel-dependent hydrogenase [Escherichia coli TA007]
gi|324005431|gb|EGB74650.1| nickel-dependent hydrogenase [Escherichia coli MS 57-2]
gi|324018161|gb|EGB87380.1| nickel-dependent hydrogenase [Escherichia coli MS 117-3]
gi|324114972|gb|EGC08937.1| nickel-dependent hydrogenase [Escherichia fergusonii B253]
gi|324119610|gb|EGC13491.1| nickel-dependent hydrogenase [Escherichia coli E1167]
gi|326337704|gb|EGD61538.1| Uptake hydrogenase large subunit [Escherichia coli O157:H7 str.
1125]
gi|326347268|gb|EGD70993.1| Uptake hydrogenase large subunit [Escherichia coli O157:H7 str.
1044]
gi|331037167|gb|EGI09391.1| hydrogenase-2 large chain (NiFe hydrogenase)(Membrane-bound
hydrogenase 2 large subunit) (HYD2) [Escherichia coli
H736]
gi|331042532|gb|EGI14674.1| hydrogenase-2 large chain (NiFe hydrogenase)(Membrane-bound
hydrogenase 2 large subunit) (HYD2) [Escherichia coli
M605]
gi|331058542|gb|EGI30523.1| hydrogenase-2 large chain (NiFe hydrogenase)(Membrane-bound
hydrogenase 2 large subunit) (HYD2) [Escherichia coli
TA143]
gi|331062895|gb|EGI34809.1| hydrogenase-2 large chain (NiFe hydrogenase)(Membrane-bound
hydrogenase 2 large subunit) (HYD2) [Escherichia coli
TA271]
gi|331068643|gb|EGI40038.1| hydrogenase-2 large chain (NiFe hydrogenase)(Membrane-bound
hydrogenase 2 large subunit) (HYD2) [Escherichia coli
TA280]
gi|331073135|gb|EGI44458.1| hydrogenase-2 large chain (NiFe hydrogenase)(Membrane-bound
hydrogenase 2 large subunit) (HYD2) [Escherichia coli
H591]
gi|331078255|gb|EGI49461.1| hydrogenase-2 large chain (NiFe hydrogenase)(Membrane-bound
hydrogenase 2 large subunit) (HYD2) [Escherichia coli
H299]
gi|332091960|gb|EGI97038.1| uptake hydrogenase large subunit [Shigella boydii 3594-74]
gi|332102537|gb|EGJ05883.1| hydrogenase-2 large subunit [Shigella sp. D9]
gi|332752671|gb|EGJ83056.1| uptake hydrogenase large subunit [Shigella flexneri K-671]
gi|332753056|gb|EGJ83440.1| uptake hydrogenase large subunit [Shigella flexneri 4343-70]
gi|332754288|gb|EGJ84654.1| uptake hydrogenase large subunit [Shigella flexneri 2747-71]
gi|332765477|gb|EGJ95695.1| nickel-dependent hydrogenase family protein [Shigella flexneri
2930-71]
gi|332999749|gb|EGK19333.1| uptake hydrogenase large subunit [Shigella flexneri K-272]
gi|333000027|gb|EGK19610.1| uptake hydrogenase large subunit [Shigella flexneri K-218]
gi|333014829|gb|EGK34174.1| uptake hydrogenase large subunit [Shigella flexneri K-304]
gi|333015614|gb|EGK34953.1| uptake hydrogenase large subunit [Shigella flexneri K-227]
Length = 567
Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ +V + G + RG E++++ + A R+ V +
Sbjct: 13 IEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALS 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A E L I++P+ Q IR + H+++ +
Sbjct: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113
Score = 97.7 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 19/91 (20%)
Query: 322 YHVPV-GE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAME 369
++P GE +EAP+G +++ + P + + E
Sbjct: 461 PNIPATGEFKGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYE 519
Query: 370 FLCKGHQLAD------VSAILGSLDIVFGEV 394
G +AD V + S D
Sbjct: 520 QSLVGTPVADPNKPLEVVRTIHSFDPCMACA 550
>gi|309703430|emb|CBJ02769.1| hydrogenase-2 large subunit [Escherichia coli ETEC H10407]
Length = 567
Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ +V + G + RG E++++ + A R+ V +
Sbjct: 13 IEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWIIVQRICGVCTTTHALS 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A E L I++P+ Q IR + H+++ +
Sbjct: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113
Score = 97.7 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 19/91 (20%)
Query: 322 YHVPV-GE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAME 369
++P GE +EAP+G +++ + P + + E
Sbjct: 461 PNIPATGEFKGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYE 519
Query: 370 FLCKGHQLAD------VSAILGSLDIVFGEV 394
G +AD V + S D
Sbjct: 520 QSLVGTPVADPNKPLEVVRTIHSFDPCMACA 550
>gi|269975988|ref|ZP_06182992.1| membrane-bound hydrogenase 1 large subunit [Mobiluncus mulieris
28-1]
gi|306817376|ref|ZP_07451121.1| quinone-reactive Ni/Fe-hydrogenase [Mobiluncus mulieris ATCC 35239]
gi|307700402|ref|ZP_07637441.1| putative Membrane-bound hydrogenase 1 large subunit [Mobiluncus
mulieris FB024-16]
gi|269935816|gb|EEZ92346.1| membrane-bound hydrogenase 1 large subunit [Mobiluncus mulieris
28-1]
gi|304649817|gb|EFM47097.1| quinone-reactive Ni/Fe-hydrogenase [Mobiluncus mulieris ATCC 35239]
gi|307614387|gb|EFN93617.1| putative Membrane-bound hydrogenase 1 large subunit [Mobiluncus
mulieris FB024-16]
Length = 586
Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats.
Identities = 31/144 (21%), Positives = 50/144 (34%), Gaps = 2/144 (1%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ LE + +++ RG EK++E + + R+ V A
Sbjct: 14 IEGHLRIELEEENGKIKKA-WSESTQFRGLEKIVENRDPRDVWAFVQRICGVCTSVHAIA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKL 139
AVE +G +IP +LIR L + H+++ P + EK
Sbjct: 73 SVTAVENAIGSKIPDNARLIRGLVMGSQEVQDHVIHFYHLHALDFVNVP-NAAKADPEKT 131
Query: 140 MVFYERASGSRMHAAYFRPGGVHQ 163
+ F R V Q
Sbjct: 132 LEFAHSIGSKWRGNNLKRFTEVRQ 155
Score = 76.5 bits (187), Expect = 7e-12, Method: Composition-based stats.
Identities = 34/397 (8%), Positives = 71/397 (17%), Gaps = 115/397 (28%)
Query: 110 LSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL 169
H D+ + L E + ++ G H + G P
Sbjct: 174 WDHPDYRLPPEADLMCVAHYLDALEFQRSMIRICTVFGGKNPHPNFLVGGMACSIDPDSS 233
Query: 170 VEDIGCWCDSFPSALND--------ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVM 221
D + + + + + +IG + G +G M
Sbjct: 234 ESINQVQMDQVRTWIEETIEFVNDCYYPDVLAVAGAYKDYFDIGATHP-NYLAVGLAGSM 292
Query: 222 IRGS-----------GAAWDLRK---------------------------SQPYECYSE- 242
G G D K Y +
Sbjct: 293 FGGDPSEARISGYGRGHGHDEVKPGVIMDGNLGQILPFNPKKIEEFVTSAWYEYSVGDDK 352
Query: 243 -----------------LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNK 285
F + + + + I R ++ G
Sbjct: 353 GLTPDKGETIVKYTGPKPPFKWLGDNDKYTWSKAPRYDGKPMQVGPIARIMLSYAQGYEP 412
Query: 286 VGPVSASD---------------------PKIVPPKRADMKRSMESLIHHFKL------- 317
+ + + + +L + K
Sbjct: 413 TVKLVNAATEKLGITVTQLNSTMGRTLARAAEAVLSASHLMDDYLALQENIKNGNIDVFD 472
Query: 318 ---YTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL--------- 365
+ ++ +E +G ++ K + P
Sbjct: 473 PSRWEPKSWPEECSGFSLIEVARGNLSHWVTIK-NGKVRNYQAVVPTTWLAGGRDANGVP 531
Query: 366 QAMEFLCKG---HQL------ADVSAILGSLDIVFGE 393
E H L + + S D
Sbjct: 532 GPYEESLMATGEHPLVNPKEPLEALRTVHSYDPCMSC 568
>gi|320666900|gb|EFX33876.1| hydrogenase 2 large subunit [Escherichia coli O157:H7 str. LSU-61]
Length = 567
Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ +V + G + RG E++++ + A R+ V +
Sbjct: 13 IEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALS 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A E L I++P+ Q IR + H+++ +
Sbjct: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113
Score = 93.9 bits (232), Expect = 4e-17, Method: Composition-based stats.
Identities = 14/91 (15%), Positives = 27/91 (29%), Gaps = 19/91 (20%)
Query: 322 YHVPV-GE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAME 369
++P GE +EAP+G +++ + P + + E
Sbjct: 461 PNIPATGEFKGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYE 519
Query: 370 FLCKGHQLA------DVSAILGSLDIVFGEV 394
G +A +V + S D
Sbjct: 520 QSLVGTPVAEPNKPLEVVRTIHSFDPCMACA 550
>gi|300916897|ref|ZP_07133600.1| nickel-dependent hydrogenase [Escherichia coli MS 115-1]
gi|300415867|gb|EFJ99177.1| nickel-dependent hydrogenase [Escherichia coli MS 115-1]
Length = 567
Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ +V + G + RG E++++ + A R+ V +
Sbjct: 13 IEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALS 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A E L I++P+ Q IR + H+++ +
Sbjct: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113
Score = 97.7 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 19/91 (20%)
Query: 322 YHVPV-GE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAME 369
++P GE +EAP+G +++ + P + + E
Sbjct: 461 PNIPATGEFKGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYE 519
Query: 370 FLCKGHQLAD------VSAILGSLDIVFGEV 394
G +AD V + S D
Sbjct: 520 QSLVGTPVADPNKPLEVVRTIHSFDPCMACA 550
>gi|227876425|ref|ZP_03994537.1| hydrogenase (acceptor) [Mobiluncus mulieris ATCC 35243]
gi|227842966|gb|EEJ53163.1| hydrogenase (acceptor) [Mobiluncus mulieris ATCC 35243]
Length = 586
Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats.
Identities = 31/144 (21%), Positives = 50/144 (34%), Gaps = 2/144 (1%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ LE + +++ RG EK++E + + R+ V A
Sbjct: 14 IEGHLRIELEEENGKIKKA-WSESTQFRGLEKIVENRDPRDVWAFVQRICGVCTSVHAIA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKL 139
AVE +G +IP +LIR L + H+++ P + EK
Sbjct: 73 SVTAVENAIGSKIPDNARLIRGLVMGSQEVQDHVIHFYHLHALDFVNVP-NAAKADPEKT 131
Query: 140 MVFYERASGSRMHAAYFRPGGVHQ 163
+ F R V Q
Sbjct: 132 LEFAHSIGSKWRGNNLKRFTEVRQ 155
Score = 76.5 bits (187), Expect = 6e-12, Method: Composition-based stats.
Identities = 34/398 (8%), Positives = 73/398 (18%), Gaps = 117/398 (29%)
Query: 110 LSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL 169
H D+ + L E + ++ G H + G P
Sbjct: 174 WDHPDYRLPPEADLMCVAHYLDALEFQRSMIRICTVFGGKNPHPNFLVGGMACSIDPDSS 233
Query: 170 VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLED---------AWGWGFSGV 220
D + + + + + N + + + V + G +G
Sbjct: 234 ESINQVQMDQVRTWIEETIEFV--NDCYYPDVLAVAGVYKDYFDIGATHPNYLAVGLAGS 291
Query: 221 MIRGS-----------GAAWDLRK---------------------------SQPYECYSE 242
M G G D K Y +
Sbjct: 292 MFGGDPSEARISGYGRGHGHDEVKPGVIMDGNLGQILPFNPKKIEEFVTSAWYEYSVGDD 351
Query: 243 ------------------LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKN 284
F + + + + I R ++ G
Sbjct: 352 KGLTPDKGETIVKYTGPKPPFKWLGDNDKYTWSKAPRYDGKPMQVGPIARIMLSYAQGYE 411
Query: 285 KVGPVSASD---------------------PKIVPPKRADMKRSMESLIHHFKL------ 317
+ + + + +L + K
Sbjct: 412 PTVKLVNAATEKLGITVTQLNSTMGRTLARAAEAVLSASHLMDDYLALQENIKNGNIDVF 471
Query: 318 ----YTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL-------- 365
+ ++ +E +G ++ K + P
Sbjct: 472 DPSRWEPKSWPEECSGFSLIEVARGNLSHWVTIK-NGKVRNYQAVVPTTWLAGGRDANGV 530
Query: 366 -QAMEFLCKG---HQL------ADVSAILGSLDIVFGE 393
E H L + + S D
Sbjct: 531 PGPYEESLMATGEHPLVNPKEPLEALRTVHSYDPCMSC 568
>gi|110643234|ref|YP_670964.1| hydrogenase 2 large subunit [Escherichia coli 536]
gi|110344826|gb|ABG71063.1| hydrogenase-2 large chain precursor [Escherichia coli 536]
Length = 567
Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ +V + G + RG E++++ + A R+ V +
Sbjct: 13 IEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALS 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A E L I++P+ Q IR + H+++ +
Sbjct: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113
Score = 97.7 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 19/91 (20%)
Query: 322 YHVPV-GE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAME 369
++P GE +EAP+G +++ + P + + E
Sbjct: 461 PNIPATGEFKGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYE 519
Query: 370 FLCKGHQLAD------VSAILGSLDIVFGEV 394
G +AD V + S D
Sbjct: 520 QSLVGTPVADPNKPLEVVRTIHSFDPCMACA 550
>gi|332086654|gb|EGI91794.1| uptake hydrogenase large subunit [Shigella boydii 5216-82]
Length = 567
Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ +V + G + RG E++++ + A R+ V +
Sbjct: 13 IEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALS 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A E L I++P+ Q IR + H+++ +
Sbjct: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113
Score = 97.7 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 19/91 (20%)
Query: 322 YHVPV-GE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAME 369
++P GE +EAP+G +++ + P + + E
Sbjct: 461 PNIPATGEFKGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYE 519
Query: 370 FLCKGHQLAD------VSAILGSLDIVFGEV 394
G +AD V + S D
Sbjct: 520 QSLVGTPVADPNKPLEVVRTIHSFDPCMACA 550
>gi|191172519|ref|ZP_03034059.1| hydrogenase-2, large subunit [Escherichia coli F11]
gi|218691285|ref|YP_002399497.1| hydrogenase 2 large subunit [Escherichia coli ED1a]
gi|227887701|ref|ZP_04005506.1| hydrogenase (acceptor) [Escherichia coli 83972]
gi|300973431|ref|ZP_07172187.1| nickel-dependent hydrogenase [Escherichia coli MS 45-1]
gi|301048190|ref|ZP_07195226.1| nickel-dependent hydrogenase [Escherichia coli MS 185-1]
gi|306816663|ref|ZP_07450795.1| hydrogenase 2 large subunit [Escherichia coli NC101]
gi|331659276|ref|ZP_08360218.1| hydrogenase-2 large chain (NiFe hydrogenase)(Membrane-bound
hydrogenase 2 large subunit) (HYD2) [Escherichia coli
TA206]
gi|190907187|gb|EDV66786.1| hydrogenase-2, large subunit [Escherichia coli F11]
gi|218428849|emb|CAR09793.2| hydrogenase 2, large subunit [Escherichia coli ED1a]
gi|222034717|emb|CAP77459.1| hydrogenase-2 large chain [Escherichia coli LF82]
gi|227835097|gb|EEJ45563.1| hydrogenase (acceptor) [Escherichia coli 83972]
gi|300299948|gb|EFJ56333.1| nickel-dependent hydrogenase [Escherichia coli MS 185-1]
gi|300410773|gb|EFJ94311.1| nickel-dependent hydrogenase [Escherichia coli MS 45-1]
gi|305850228|gb|EFM50687.1| hydrogenase 2 large subunit [Escherichia coli NC101]
gi|307555089|gb|ADN47864.1| hydrogenase 2, large subunit [Escherichia coli ABU 83972]
gi|312947555|gb|ADR28382.1| hydrogenase 2 large subunit [Escherichia coli O83:H1 str. NRG 857C]
gi|315291275|gb|EFU50635.1| nickel-dependent hydrogenase [Escherichia coli MS 153-1]
gi|315297629|gb|EFU56906.1| nickel-dependent hydrogenase [Escherichia coli MS 16-3]
gi|320195144|gb|EFW69773.1| hydrogenase 2 large subunit [Escherichia coli WV_060327]
gi|324011910|gb|EGB81129.1| nickel-dependent hydrogenase [Escherichia coli MS 60-1]
gi|331053858|gb|EGI25887.1| hydrogenase-2 large chain (NiFe hydrogenase)(Membrane-bound
hydrogenase 2 large subunit) (HYD2) [Escherichia coli
TA206]
Length = 567
Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ +V + G + RG E++++ + A R+ V +
Sbjct: 13 IEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALS 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A E L I++P+ Q IR + H+++ +
Sbjct: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113
Score = 97.7 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 19/91 (20%)
Query: 322 YHVPV-GE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAME 369
++P GE +EAP+G +++ + P + + E
Sbjct: 461 PNIPATGEFKGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYE 519
Query: 370 FLCKGHQLAD------VSAILGSLDIVFGEV 394
G +AD V + S D
Sbjct: 520 QSLVGTPVADPNKPLEVVRTIHSFDPCMACA 550
>gi|312968674|ref|ZP_07782883.1| uptake hydrogenase large subunit [Escherichia coli 2362-75]
gi|312286892|gb|EFR14803.1| uptake hydrogenase large subunit [Escherichia coli 2362-75]
Length = 567
Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ +V + G + RG E++++ + A R+ V +
Sbjct: 13 IEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALS 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A E L I++P+ Q IR + H+++ +
Sbjct: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113
Score = 97.3 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 19/91 (20%)
Query: 322 YHVPV-GE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAME 369
++P GE +EAP+G +++ + P + + E
Sbjct: 461 PNIPATGEFKGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYE 519
Query: 370 FLCKGHQLAD------VSAILGSLDIVFGEV 394
G +AD V + S D
Sbjct: 520 QSLVGTPVADPNKPLEVVRTIHSFDPCMACA 550
>gi|170018747|ref|YP_001723701.1| hydrogenase 2 large subunit [Escherichia coli ATCC 8739]
gi|312972742|ref|ZP_07786915.1| uptake hydrogenase large subunit [Escherichia coli 1827-70]
gi|169753675|gb|ACA76374.1| nickel-dependent hydrogenase large subunit [Escherichia coli ATCC
8739]
gi|310332684|gb|EFP99897.1| uptake hydrogenase large subunit [Escherichia coli 1827-70]
gi|323941903|gb|EGB38082.1| nickel-dependent hydrogenase [Escherichia coli E482]
gi|332344953|gb|AEE58287.1| membrane-bound hydrogenase large subunit [Escherichia coli UMNK88]
Length = 567
Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ +V + G + RG E++++ + A R+ V +
Sbjct: 13 IEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALS 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A E L I++P+ Q IR + H+++ +
Sbjct: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113
Score = 97.3 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 19/91 (20%)
Query: 322 YHVPV-GE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAME 369
++P GE +EAP+G +++ + P + + E
Sbjct: 461 PNIPATGEFKGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYE 519
Query: 370 FLCKGHQLAD------VSAILGSLDIVFGEV 394
G +AD V + S D
Sbjct: 520 QSLVGTPVADPNKPLEVVRTIHSFDPCMACA 550
>gi|333001186|gb|EGK20754.1| uptake hydrogenase large subunit domain protein [Shigella flexneri
VA-6]
Length = 452
Score = 106 bits (266), Expect = 4e-21, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 42/104 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + ++ + V G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
A+E +GI++P +IR + HL++ A
Sbjct: 87 SVYAIEDAIGIKVPDNANIIRNIMLTTLWCHDHLVHFYQLAGMD 130
>gi|26249562|ref|NP_755602.1| hydrogenase 2 large subunit [Escherichia coli CFT073]
gi|26109970|gb|AAN82175.1|AE016766_263 Hydrogenase-2 large chain precursor [Escherichia coli CFT073]
Length = 567
Score = 106 bits (266), Expect = 4e-21, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ +V + G + RG E++++ + A R+ V +
Sbjct: 13 IEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALS 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A E L I++P+ Q IR + H+++ +
Sbjct: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113
Score = 97.3 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 19/91 (20%)
Query: 322 YHVPV-GE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAME 369
++P GE +EAP+G +++ + P + + E
Sbjct: 461 PNIPATGEFKGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYE 519
Query: 370 FLCKGHQLAD------VSAILGSLDIVFGEV 394
G +AD V + S D
Sbjct: 520 QSLVGTPVADPNKPLEVVRTIHSFDPCMACA 550
>gi|269139709|ref|YP_003296410.1| hydrogenase 2 large subunit [Edwardsiella tarda EIB202]
gi|267985370|gb|ACY85199.1| hydrogenase 2 large subunit [Edwardsiella tarda EIB202]
gi|304559578|gb|ADM42242.1| Uptake hydrogenase large subunit [Edwardsiella tarda FL6-60]
Length = 567
Score = 106 bits (266), Expect = 4e-21, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 1/104 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ V + G + RG E +++ A R+ V A
Sbjct: 13 IEGHLRIDCEIENGKVTKA-WSSGTMWRGMEDIVKGNDPRDAWMIVQRICGVCTTIHAIA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
AVE +G ++P+ Q IR L I H+++ +
Sbjct: 72 SVRAVESAVGAKVPVNAQYIRNLILSAHSIHDHIVHFYQLSAMD 115
Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 19/129 (14%), Positives = 32/129 (24%), Gaps = 22/129 (17%)
Query: 287 GPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHV------PVGEVYAAVEAPKGEF 340
G + + K M + + + K Y EAP+G
Sbjct: 423 GRIIGRAVRCCVLKDTLMMQWQALIDNIGKGDHVAYIPAEIDPNKEYRGVGFEEAPRGAL 482
Query: 341 GVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VSAILG 385
+++ G K + P + E G +AD V +
Sbjct: 483 SHWIVIKG-GKIANYQAVVPSTWNSGPRNGQDEPGPYEQALVGTPVADINKPLEVVRTVH 541
Query: 386 SLDIVFGEV 394
S D
Sbjct: 542 SFDPCMSCA 550
>gi|332088499|gb|EGI93616.1| uptake hydrogenase large subunit [Shigella dysenteriae 155-74]
Length = 560
Score = 106 bits (266), Expect = 4e-21, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ +V + G + RG E++++ + A R+ V +
Sbjct: 13 IEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALS 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A E L I++P+ Q IR + H+++ +
Sbjct: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113
Score = 97.3 bits (241), Expect = 4e-18, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 19/91 (20%)
Query: 322 YHVPV-GE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAME 369
++P GE +EAP+G +++ + P + + E
Sbjct: 461 PNIPATGEFKGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYE 519
Query: 370 FLCKGHQLAD------VSAILGSLDIVFGEV 394
G +AD V + S D
Sbjct: 520 QSLVGTPVADPNKPLEVVRTIHSFDPCMACA 550
>gi|213417801|ref|ZP_03350911.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Typhi str. E01-6750]
Length = 511
Score = 106 bits (266), Expect = 4e-21, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ +V + G + RG E++++ + A R+ V +
Sbjct: 13 IEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHAIS 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A E L I++P+ Q IR + H+++ +
Sbjct: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113
Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 5/40 (12%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
+ +EAP+G +++ + P +
Sbjct: 470 KGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGP 508
>gi|119385820|ref|YP_916875.1| nickel-dependent hydrogenase, large subunit [Paracoccus
denitrificans PD1222]
gi|119376415|gb|ABL71179.1| nickel-dependent hydrogenase, large subunit [Paracoccus
denitrificans PD1222]
Length = 597
Score = 106 bits (266), Expect = 5e-21, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 40/102 (39%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D + V R G + RG E +++ + A + +R+ V
Sbjct: 26 IEGHMRCEVNVDDQGVIRNAVSTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGTHALT 85
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI IP IR + I H+++
Sbjct: 86 SVRAVEDALGIMIPDNANSIRNMMQLALEIHDHIVHFYHLHA 127
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 41/394 (10%), Positives = 86/394 (21%), Gaps = 111/394 (28%)
Query: 110 LSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL 169
+ + D+ A T L + +++++ + G H + G
Sbjct: 187 WDNPAYLLPPEADLMATTHYLEALDLQKEIVKVHTIFGGKNPHPNWLVGGVPCPINIDGT 246
Query: 170 --VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDA------WGWGFSGVM 221
V I + S++ D+ D N G K G +
Sbjct: 247 GSVGAINMERLNLVSSIIDLCDEFNKNVYIPDVIAIGGFYKSWLYGGGLSSQAVMAYGDI 306
Query: 222 ---------------------------------------IRGSGAAWDL----RKSQPYE 238
+ + R P++
Sbjct: 307 PENPNDFSPEQLHLPRGAIINGNLNEVHDVDPRDPEQVQEFVDHSWYSYGDPGRGLHPWD 366
Query: 239 CYSELDFDIPIGKHG-------------DCYDRYLVRMMEMRESVKIIRQCVNRLLGKNK 285
+ F++ G + + E + R + G
Sbjct: 367 GETNPKFELGPNHKGTKTRIEQLDESAKYSWIKAPRWRGHAMEVGPLARYIIGYAKGHED 426
Query: 286 VGPVSASDPKIVPPKRADM--------KRSMES-----LIHHF----------------- 315
+ + + + R++ES L HF
Sbjct: 427 IKNQVDGLLRTMDLPFEALFSTLGRTAARALESEYCGRLQRHFFDKMVRNIKNGDQSTAN 486
Query: 316 -KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA---------HL 365
+ + + EAP+G G ++ + + P ++
Sbjct: 487 VEKWDPSTWPKEAKGVGMTEAPRGALGHWIRIK-DGRIENYQCVVPTTWNGSPRDSQGNI 545
Query: 366 QAMEFLCKGHQL--AD----VSAILGSLDIVFGE 393
A E + D + L S D
Sbjct: 546 GAFEASLMNTPMERPDEPVEILRTLHSFDPCLAC 579
>gi|20378801|gb|AAM20989.1| hydrogenase large subunit [Bradyrhizobium sp. UPM1029]
Length = 156
Score = 106 bits (266), Expect = 5e-21, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 40/97 (41%)
Query: 25 RLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAV 84
R+ + +D + V R G + RG E +++ + A + +R+ V AV
Sbjct: 1 RVEVNVDADNVIRNAVSAGTMWRGIEVILKNRDPRDAWAFTERICGVCTGTHALTSVRAV 60
Query: 85 EKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
E LGI IP IR L ++ H+++
Sbjct: 61 ENALGITIPENANSIRNLMQLALQVHDHVVHFYHLHA 97
>gi|294676325|ref|YP_003576940.1| hydrogenase large subunit [Rhodobacter capsulatus SB 1003]
gi|294475145|gb|ADE84533.1| hydrogenase, large subunit [Rhodobacter capsulatus SB 1003]
Length = 597
Score = 106 bits (266), Expect = 5e-21, Method: Composition-based stats.
Identities = 41/384 (10%), Positives = 86/384 (22%), Gaps = 113/384 (29%)
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+ A T L + +++++ + G H + G + +
Sbjct: 198 ADLMATTHYLEALDLQKEVVKVHTIFGGKNPHPNWLVGGVPCPINVDGVGAVGAINMERL 257
Query: 181 P--SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG------------VMIRGSG 226
S++ D T N IG E +G G SG +G
Sbjct: 258 NLVSSIIDRCTEFTRNVYLPD-LKAIGGFYKEWLYGGGLSGQSVLSYGDIPENPNDFSAG 316
Query: 227 AAWDLR-----------------------KSQPYECYSELDFDIPIGKH----------- 252
R + + Y + + +
Sbjct: 317 QLHLPRGAIINGNLNEVHDVDTTDPEQVQEFVDHSWYDYGEPGMGLHPWDGRTEPKFELG 376
Query: 253 -----------------GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPK 295
+ + E + R V G + +
Sbjct: 377 PNLKGTRTNIENIDEGAKYSWIKAPRWRGNAMEVGPLARYIVGYAKGHEDIKNQVEGLLR 436
Query: 296 IVPPKRADM--------KRSMES-----LIHHF------------------KLYTEGYHV 324
+ + + R++E+ L HF + +
Sbjct: 437 DMNLPVSALFSTLGRTAARALEAEYCCRLQKHFFDKLVTNIKNGDSSTANVEKWDPSTWP 496
Query: 325 PVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA---------HLQAMEFLCKGH 375
+ EAP+G G ++ + + P ++ A E
Sbjct: 497 KEAKGVGMTEAPRGALGHWVKIK-DGRIENYQCVVPTTWNGSPRDSKGNIGAFEASLLNT 555
Query: 376 QLA------DVSAILGSLDIVFGE 393
++ ++ L S D
Sbjct: 556 KMERPEEPVEILRTLHSFDPCLAC 579
Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 40/102 (39%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + ++ + + G + RG E +++ + A + +R+ V
Sbjct: 26 IEGHMRCEVNVNDQGIITNAVSTGTMWRGLEVILKGRDPRDAWAFTERICGVCTGTHALT 85
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI IP IR + +I H+++
Sbjct: 86 SVRAVESALGITIPDNANSIRNMMQLNLQIHDHIVHFYHLHA 127
>gi|161506282|ref|YP_001573394.1| hydrogenase 2 large subunit [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:-- str. RSK2980]
gi|160867629|gb|ABX24252.1| hypothetical protein SARI_04478 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 567
Score = 106 bits (266), Expect = 5e-21, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ +V + G + RG E++++ + A R+ V +
Sbjct: 13 IEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHAIS 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A E L I++P+ Q IR + H+++ +
Sbjct: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113
Score = 97.7 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 19/91 (20%)
Query: 322 YHVPV-GE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAME 369
++P GE +EAP+G +++ + P + + E
Sbjct: 461 PNIPATGEFKGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYE 519
Query: 370 FLCKGHQLAD------VSAILGSLDIVFGEV 394
G +AD V + S D
Sbjct: 520 QSLVGTPIADPAKPLEVVRTIHSFDPCMACA 550
>gi|16761925|ref|NP_457542.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|29143412|ref|NP_806754.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|213161309|ref|ZP_03347019.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213580852|ref|ZP_03362678.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
gi|213648648|ref|ZP_03378701.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
gi|213854526|ref|ZP_03382766.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
gi|25285656|pir||AC0885 hydrogenase-2 large chain [imported] - Salmonella enterica subsp.
enterica serovar Typhi (strain CT18)
gi|16504227|emb|CAD02979.1| hydrogenase-2 large subunit [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29139046|gb|AAO70614.1| hydrogenase-2 large subunit [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
Length = 567
Score = 106 bits (266), Expect = 5e-21, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ +V + G + RG E++++ + A R+ V +
Sbjct: 13 IEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHAIS 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A E L I++P+ Q IR + H+++ +
Sbjct: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113
Score = 96.9 bits (240), Expect = 5e-18, Method: Composition-based stats.
Identities = 12/82 (14%), Positives = 23/82 (28%), Gaps = 16/82 (19%)
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLA 378
+ +EAP+G +++ + P + + E G +A
Sbjct: 470 KGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPIA 528
Query: 379 D------VSAILGSLDIVFGEV 394
D V + S D
Sbjct: 529 DPAKPLEVVRTIHSFDPCMACA 550
>gi|213424815|ref|ZP_03357565.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
Length = 567
Score = 106 bits (266), Expect = 5e-21, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ +V + G + RG E++++ + A R+ V +
Sbjct: 13 IEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHAIS 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A E L I++P+ Q IR + H+++ +
Sbjct: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113
Score = 96.9 bits (240), Expect = 5e-18, Method: Composition-based stats.
Identities = 12/82 (14%), Positives = 23/82 (28%), Gaps = 16/82 (19%)
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLA 378
+ +EAP+G +++ + P + + E G +A
Sbjct: 470 KGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPIA 528
Query: 379 D------VSAILGSLDIVFGEV 394
D V + S D
Sbjct: 529 DPAKPLEVVRTIHSFDPCMACA 550
>gi|168238099|ref|ZP_02663157.1| hydrogenase-2, large subunit [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|168463652|ref|ZP_02697569.1| hydrogenase-2, large subunit [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|194735258|ref|YP_002116102.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|204928303|ref|ZP_03219503.1| hydrogenase-2, large subunit [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|194710760|gb|ACF89981.1| hydrogenase-2, large subunit [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|195633351|gb|EDX51765.1| hydrogenase-2, large subunit [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|197289010|gb|EDY28381.1| hydrogenase-2, large subunit [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|204322625|gb|EDZ07822.1| hydrogenase-2, large subunit [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|322613549|gb|EFY10490.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322621141|gb|EFY17999.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322624204|gb|EFY21038.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322628057|gb|EFY24846.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322633176|gb|EFY29918.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322636247|gb|EFY32955.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322639584|gb|EFY36272.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322647484|gb|EFY43973.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322648667|gb|EFY45114.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322653721|gb|EFY50047.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322657828|gb|EFY54096.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322663930|gb|EFY60129.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322669058|gb|EFY65209.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322672947|gb|EFY69054.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322678061|gb|EFY74124.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322681238|gb|EFY77271.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322687832|gb|EFY83799.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|323195643|gb|EFZ80820.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323199675|gb|EFZ84765.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323202577|gb|EFZ87617.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323207935|gb|EFZ92881.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|323212512|gb|EFZ97329.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323215005|gb|EFZ99753.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323222735|gb|EGA07100.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323224183|gb|EGA08476.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323230508|gb|EGA14626.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323235141|gb|EGA19227.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323239181|gb|EGA23231.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323244462|gb|EGA28468.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323247077|gb|EGA31043.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323253441|gb|EGA37270.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323256253|gb|EGA39989.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323262572|gb|EGA46128.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323267333|gb|EGA50817.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323269264|gb|EGA52719.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
Length = 567
Score = 106 bits (266), Expect = 5e-21, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ +V + G + RG E++++ + A R+ V +
Sbjct: 13 IEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHAIS 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A E L I++P+ Q IR + H+++ +
Sbjct: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113
Score = 97.7 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 19/91 (20%)
Query: 322 YHVPV-GE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAME 369
++P GE +EAP+G +++ + P + + E
Sbjct: 461 PNIPATGEFKGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYE 519
Query: 370 FLCKGHQLAD------VSAILGSLDIVFGEV 394
G +AD V + S D
Sbjct: 520 QSLVGTPIADPAKPLEVVRTIHSFDPCMACA 550
>gi|114321177|ref|YP_742860.1| nickel-dependent hydrogenase, large subunit [Alkalilimnicola
ehrlichii MLHE-1]
gi|114227571|gb|ABI57370.1| nickel-dependent hydrogenase, large subunit [Alkalilimnicola
ehrlichii MLHE-1]
Length = 595
Score = 106 bits (266), Expect = 5e-21, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 38/102 (37%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + LD V G L RG E +++ + A + R+ V
Sbjct: 27 IEGHMRCEVNLDENNVITNAVSTGTLWRGLEVILKGRDPRDAWAFTQRICGVCTGTHALT 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI IP IR + ++ HL++
Sbjct: 87 SVRAVEDALGISIPENANSIRNIMQLALQVHDHLVHFYHLHA 128
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 35/381 (9%), Positives = 81/381 (21%), Gaps = 109/381 (28%)
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP------------- 167
++ A+ L + ++++ + G H + G
Sbjct: 198 ANLMAVAHYLEALDFQKEITKIHAVYGGKNPHPNWLVGGVPCPINMDDTGAGGAINIERL 257
Query: 168 ----ELVEDIGCWCDSF--------------------------------PSALNDISDLL 191
E+++ + D P ND + LL
Sbjct: 258 NLVSEIIDRCIQFVDQVYLPDLKAIASYYTDWLYGGGLASRSLLSYGDVPEHANDYNSLL 317
Query: 192 TG------------NRIFKQRNVNIGTVKLEDAWGWGFSGVMIR-GSGAAWDLRKSQPYE 238
+ + + I + +G + + G + P
Sbjct: 318 MPKGAIINGKLDEVHPVDLRDPDEIQEFVTHSWYRYGDDDIGLHPWDGITEADYRLGPNT 377
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNK------------- 285
+ + + E + R + + G +
Sbjct: 378 KGRHDNIQQLDEAGKYSWIKAPRWRGHAMEVGPLARYVIGYMQGNPEFKEPTDAFLHDLG 437
Query: 286 ------------------VGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVG 327
+A + K R+ ++ + +
Sbjct: 438 VPLEALFSTLGRTAARGLEASWAAHKMRYFQDKLVATIRAGDTATANVAKWEPDKWPSET 497
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLA 378
EAP+G G +++ K + P + + E LA
Sbjct: 498 RGVGFTEAPRGALGHWVVIK-NRKIENYQCVVPTTWNGSPRDARGEIGPFEASLLNTPLA 556
Query: 379 ------DVSAILGSLDIVFGE 393
++ L S D
Sbjct: 557 KRDQPLEILRTLHSFDPCLAC 577
>gi|16766447|ref|NP_462062.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|62181658|ref|YP_218075.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|161616127|ref|YP_001590092.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|167551947|ref|ZP_02345700.1| hydrogenase-2, large subunit [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|167990311|ref|ZP_02571411.1| hydrogenase-2, large subunit [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|168242966|ref|ZP_02667898.1| hydrogenase-2, large subunit [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|168262902|ref|ZP_02684875.1| hydrogenase-2, large subunit [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|168819798|ref|ZP_02831798.1| hydrogenase-2, large subunit [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|194443001|ref|YP_002042411.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194448931|ref|YP_002047142.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|197264675|ref|ZP_03164749.1| hydrogenase-2, large subunit [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|198244643|ref|YP_002217124.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|200387923|ref|ZP_03214535.1| hydrogenase-2, large subunit [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|205354065|ref|YP_002227866.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|207858406|ref|YP_002245057.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|16421701|gb|AAL22021.1| hydrogenase-2, large subunit [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|62129291|gb|AAX66994.1| hydrogenase-2, large subunit [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|161365491|gb|ABX69259.1| hypothetical protein SPAB_03929 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194401664|gb|ACF61886.1| hydrogenase-2, large subunit [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194407235|gb|ACF67454.1| hydrogenase-2, large subunit [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|197242930|gb|EDY25550.1| hydrogenase-2, large subunit [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197939159|gb|ACH76492.1| hydrogenase-2, large subunit [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|199605021|gb|EDZ03566.1| hydrogenase-2, large subunit [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|205273846|emb|CAR38845.1| hydrogenase-2 large subunit [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205323322|gb|EDZ11161.1| hydrogenase-2, large subunit [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|205331255|gb|EDZ18019.1| hydrogenase-2, large subunit [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|205337811|gb|EDZ24575.1| hydrogenase-2, large subunit [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|205343401|gb|EDZ30165.1| hydrogenase-2, large subunit [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|205348467|gb|EDZ35098.1| hydrogenase-2, large subunit [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|206710209|emb|CAR34566.1| hydrogenase-2 large subunit [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|261248277|emb|CBG26114.1| hydrogenase-2 large subunit [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267995329|gb|ACY90214.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301159701|emb|CBW19220.1| hydrogenase-2 large subunit [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312914171|dbj|BAJ38145.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|320087596|emb|CBY97360.1| probable large subunit, hydrogenase-2 [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
gi|321225824|gb|EFX50878.1| Uptake hydrogenase large subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|322716142|gb|EFZ07713.1| hydrogenase-2, large subunit [Salmonella enterica subsp. enterica
serovar Choleraesuis str. A50]
gi|323131504|gb|ADX18934.1| hydrogenase-2, large subunit [Salmonella enterica subsp. enterica
serovar Typhimurium str. 4/74]
gi|326624897|gb|EGE31242.1| hydrogenase-2, large subunit [Salmonella enterica subsp. enterica
serovar Dublin str. 3246]
gi|326629181|gb|EGE35524.1| hydrogenase-2, large subunit [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9]
gi|332990012|gb|AEF08995.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
Length = 567
Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ +V + G + RG E++++ + A R+ V +
Sbjct: 13 IEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHAIS 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A E L I++P+ Q IR + H+++ +
Sbjct: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113
Score = 97.3 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 19/91 (20%)
Query: 322 YHVPV-GE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAME 369
++P GE +EAP+G +++ + P + + E
Sbjct: 461 PNIPATGEFKGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYE 519
Query: 370 FLCKGHQLAD------VSAILGSLDIVFGEV 394
G +AD V + S D
Sbjct: 520 QSLVGTPIADPAKPLEVVRTIHSFDPCMACA 550
>gi|331662386|ref|ZP_08363309.1| hydrogenase-1 large chain (NiFe hydrogenase) (Membrane-bound
hydrogenase 1 large subunit) (HYD1) [Escherichia coli
TA143]
gi|331060808|gb|EGI32772.1| hydrogenase-1 large chain (NiFe hydrogenase) (Membrane-bound
hydrogenase 1 large subunit) (HYD1) [Escherichia coli
TA143]
Length = 162
Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 42/104 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + ++ + V G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
A+E +GI++P +IR + HL++ A
Sbjct: 87 SVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130
>gi|168231739|ref|ZP_02656797.1| hydrogenase-2, large subunit [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|194471009|ref|ZP_03076993.1| hydrogenase-2, large subunit [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|197248446|ref|YP_002148068.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|238909947|ref|ZP_04653784.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
gi|194457373|gb|EDX46212.1| hydrogenase-2, large subunit [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|197212149|gb|ACH49546.1| hydrogenase-2, large subunit [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|205333816|gb|EDZ20580.1| hydrogenase-2, large subunit [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
Length = 567
Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ +V + G + RG E++++ + A R+ V +
Sbjct: 13 IEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHAIS 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A E L I++P+ Q IR + H+++ +
Sbjct: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113
Score = 97.3 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 19/91 (20%)
Query: 322 YHVPV-GE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAME 369
++P GE +EAP+G +++ + P + + E
Sbjct: 461 PNIPATGEFKGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYE 519
Query: 370 FLCKGHQLAD------VSAILGSLDIVFGEV 394
G +AD V + S D
Sbjct: 520 QSLVGTPIADPAKPLEVVRTIHSFDPCMACA 550
>gi|323976648|gb|EGB71736.1| nickel-dependent hydrogenase [Escherichia coli TW10509]
Length = 597
Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats.
Identities = 20/104 (19%), Positives = 41/104 (39%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + ++ + V G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
A+E + I++P +IR + HL++ A
Sbjct: 87 SVYAIEDAIDIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130
Score = 90.8 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 13/93 (13%), Positives = 24/93 (25%), Gaps = 16/93 (17%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQ 366
+ + EAP+G G + K + P + +
Sbjct: 488 EKWEPATWPTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVPTTWNASPRDPKGQIG 546
Query: 367 AMEFLCKGHQLA------DVSAILGSLDIVFGE 393
A E ++A ++ L S D
Sbjct: 547 AYEAALMNTKMAIPEQPLEILRTLHSFDPCLAC 579
>gi|52426416|ref|YP_089553.1| hydrogenase 2 large subunit [Mannheimia succiniciproducens MBEL55E]
gi|52308468|gb|AAU38968.1| HyaB protein [Mannheimia succiniciproducens MBEL55E]
Length = 569
Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 1/104 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ +V G + RG E +++ A R+ V
Sbjct: 15 IEGHLRIDCEIENGVVTNA-WSTGTMWRGMENIVKGADPRDAWMIMQRICGVCTTVHAIL 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
AVE +G ++P+ Q IR + I H+++ +
Sbjct: 74 SVRAVEDAVGAKVPLNAQYIRNMILAAHSIHDHIVHFYQLSAMD 117
Score = 101 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/381 (11%), Positives = 84/381 (22%), Gaps = 102/381 (26%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQ-DIPPELV 170
H + +++ A+ L E + G H GGV
Sbjct: 176 HPAMKLSPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAIGGVANPINLDSQA 235
Query: 171 EDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG----------- 219
S ++ ++D + N+++K E SG
Sbjct: 236 VLNLERLMYVKSCIDRLNDFI--NQVYKVDTAIFAAYYPEWLNLGKTSGNYLAVPEYPVN 293
Query: 220 ---------------------------------VMIRGSGAAWDLRKSQ---PYECYSEL 243
I+ SG + P+ +
Sbjct: 294 AENSEFALTGGYLQNFDLNTFRPITQQKDNFVVQGIKESGKHAWYEDDEALAPWAGLTRP 353
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+ + + ++ E + + L KN+V ++ K + + A
Sbjct: 354 KYTQWDENGKYSWVKAPSFYDDVVEVGPLA-YLLTNLAAKNEVTTKHFNELKSIYDQLAG 412
Query: 304 MKRSMESL---------------------------------IHHFKLYTEGYHVPVGE-- 328
+ L Y + GE
Sbjct: 413 RNLEINDLHSTLGRIIGRTVHCCALNEILTQQWQLLVNNIGKGDTIAYLKANIPENGEFR 472
Query: 329 VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLAD 379
E P+G +++ K + P + L E G +AD
Sbjct: 473 GVGFGEVPRGMLSHWVVIK-DGKIENYQAVVPSTWNSGPRNQHDALGPYEQSLIGTPVAD 531
Query: 380 ------VSAILGSLDIVFGEV 394
V + S D
Sbjct: 532 PAKPLEVVRTIHSFDPCMSCA 552
>gi|332558939|ref|ZP_08413261.1| hydrogenase large subunit [Rhodobacter sphaeroides WS8N]
gi|332276651|gb|EGJ21966.1| hydrogenase large subunit [Rhodobacter sphaeroides WS8N]
Length = 596
Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 41/102 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D + + R G + RG E +++ + A + +R+ V
Sbjct: 25 IEGHMRCEVNVDDQGIIRNAVSTGTMWRGLEVILKGRDPRDAWAFTERICGVCTGTHALT 84
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI IP IR + +I H+++
Sbjct: 85 SVRAVEDALGISIPDNANSIRNMMQLNLQIHDHIVHFYHLHA 126
Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats.
Identities = 24/234 (10%), Positives = 55/234 (23%), Gaps = 48/234 (20%)
Query: 207 VKLEDAWGWGFSGVMIR-GSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMME 265
+ +G G + G + P + + + +
Sbjct: 346 FVDHSWYAYGEPGRGLHPWDGVTEPRYELGPNAKGTRTNILELDEAAKYSWIKAPRWKGH 405
Query: 266 MRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM--------KRSMES-----LI 312
E + R V G + + + + + R++E+ L
Sbjct: 406 AMEVGPLARYIVGYAKGHEDIKNQVEGLLRTMDLPVSALFSTLGRTAARALEAEYCCRLQ 465
Query: 313 HHF------------------KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYR 354
HF + + + EAP+G G ++ +
Sbjct: 466 KHFFDKLITNVKNGDSSTANVEKWEPRTWPKEAKGVGMTEAPRGALGHWIRIK-DGRIEN 524
Query: 355 CKIRAPGYA---------HLQAMEFLCKGHQLA------DVSAILGSLDIVFGE 393
+ P ++ A E ++ ++ L S D
Sbjct: 525 YQCVVPTTWNGSPRDAAGNIGAFEASLLDTKMERPEEPVEILRTLHSFDPCLAC 578
>gi|257063995|ref|YP_003143667.1| Ni,Fe-hydrogenase I large subunit [Slackia heliotrinireducens DSM
20476]
gi|256791648|gb|ACV22318.1| Ni,Fe-hydrogenase I large subunit [Slackia heliotrinireducens DSM
20476]
Length = 545
Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats.
Identities = 47/340 (13%), Positives = 76/340 (22%), Gaps = 74/340 (21%)
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSA---- 183
L E + G H PGG E ++D+ D +
Sbjct: 185 HYLEALEMQAAASRISGILGGKMPHVMTLVPGGTMFVPTAENLDDLKGLIDKIYNWVYAT 244
Query: 184 -LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIR--------GSG--AAWDLR 232
L D + +G + R G D
Sbjct: 245 LLPDTLAVAQFYPEAATFGQGVGRYGAWGVFEAPSFEYNERYLPAGILEADGTLNDIDES 304
Query: 233 KSQPYECYSELD---------------FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCV 277
K Y +S + + + +++ + E+ + R V
Sbjct: 305 KITEYVGHSWYEGDKDLPPFEQGVHPAYTEYNVEDRYTWNKCPRYDGKPLEAGGLSRLLV 364
Query: 278 NRLLGKNKVGPVSASDPKIVPPKRAD------------------------MKRSMESLIH 313
G V + K+ D MK + L+
Sbjct: 365 AYKRGVPFVVEYVDQVITALGGKKGDYSILQNTLGRTAARQIETMYIAQLMKDWLNELVE 424
Query: 314 HFKLYTEGYHV----PVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---- 365
K + V GE EAP+G +I P ++
Sbjct: 425 GLKGGDSTFFVDHDAKQGEGTGFWEAPRGALYHSEKVK-KGLVDDYQIIIPTTWNIAPLD 483
Query: 366 -----QAMEFLCKGHQLADVS------AILGSLDIVFGEV 394
ME G +ADV + S D
Sbjct: 484 PDGNHGPMEQALIGVPVADVEKPINALRTVHSFDPCTACA 523
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 1/100 (1%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR +E+ +V G RG E ++ + A R+ V P++ HA
Sbjct: 12 IEGHLRAEMEVTNGVVTDA-WVSGGSFRGMELVVRNRRPEDAAQIVQRICGVCPVSHAHA 70
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
+A E+ GI IP ++IR + + SH+L
Sbjct: 71 STIAAERAYGITIPNNARIIRNMLEGAQFLHSHILWFYNL 110
>gi|77464064|ref|YP_353568.1| hydrogenase protein large subunit [Rhodobacter sphaeroides 2.4.1]
gi|126462908|ref|YP_001044022.1| nickel-dependent hydrogenase, large subunit [Rhodobacter
sphaeroides ATCC 17029]
gi|221639927|ref|YP_002526189.1| Uptake hydrogenase [Rhodobacter sphaeroides KD131]
gi|77388482|gb|ABA79667.1| hydrogenase protein large subunit [Rhodobacter sphaeroides 2.4.1]
gi|126104572|gb|ABN77250.1| nickel-dependent hydrogenase, large subunit [Rhodobacter
sphaeroides ATCC 17029]
gi|221160708|gb|ACM01688.1| Uptake hydrogenase [Rhodobacter sphaeroides KD131]
Length = 596
Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 41/102 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D + + R G + RG E +++ + A + +R+ V
Sbjct: 25 IEGHMRCEVNVDDQGIIRNAVSTGTMWRGLEVILKGRDPRDAWAFTERICGVCTGTHALT 84
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI IP IR + +I H+++
Sbjct: 85 SVRAVEDALGISIPDNANSIRNMMQLNLQIHDHIVHFYHLHA 126
Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats.
Identities = 24/234 (10%), Positives = 55/234 (23%), Gaps = 48/234 (20%)
Query: 207 VKLEDAWGWGFSGVMIR-GSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMME 265
+ +G G + G + P + + + +
Sbjct: 346 FVDHSWYAYGEPGRGLHPWDGVTEPRYELGPNAKGTRTNILELDEAAKYSWIKAPRWKGH 405
Query: 266 MRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM--------KRSMES-----LI 312
E + R V G + + + + + R++E+ L
Sbjct: 406 AMEVGPLARYIVGYAKGHEDIKNQVEGLLRTMDLPVSALFSTLGRTAARALEAEYCCRLQ 465
Query: 313 HHF------------------KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYR 354
HF + + + EAP+G G ++ +
Sbjct: 466 KHFFDKLITNVKNGDSSTANVEKWEPRTWPKEAKGVGMTEAPRGALGHWIRIK-DGRIEN 524
Query: 355 CKIRAPGYA---------HLQAMEFLCKGHQLA------DVSAILGSLDIVFGE 393
+ P ++ A E ++ ++ L S D
Sbjct: 525 YQCVVPTTWNGSPRDAAGNIGAFEASLLDTKMERPEEPVEILRTLHSFDPCLAC 578
>gi|24373658|ref|NP_717701.1| quinone-reactive Ni/Fe hydrogenase, large subunit [Shewanella
oneidensis MR-1]
gi|24348005|gb|AAN55145.1|AE015651_4 quinone-reactive Ni/Fe hydrogenase, large subunit [Shewanella
oneidensis MR-1]
Length = 567
Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats.
Identities = 43/358 (12%), Positives = 71/358 (19%), Gaps = 90/358 (25%)
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
AL+ L E + G H GGV + W
Sbjct: 189 ALSHYLKALEVQRVAAEMLAIFGGKSPHPQSLVVGGVTSVRDMLSPARLQEWKQKHEIVT 248
Query: 185 NDISDLLTGNRIFKQRNVNI------------------------------GTVKLEDAWG 214
+ I + + G + D G
Sbjct: 249 DFILRAYQADIVMAAEAFGTEPSVLGGVNVKNFMATNDFVLANGEYLFDQGVIMNGDLAG 308
Query: 215 WGFSGVMIRGSGAAWDLRKSQ-PYECYSELDFDIPIGKH----------------GDCYD 257
+ + + P Y G +
Sbjct: 309 VSDINPDLIAEDVSHAWYNADAPQHPYDGTTIPNYTGFVERDTVYGKLPTLDGDGKYSWV 368
Query: 258 RYLVRMMEMRESVKIIRQCVNRLLGKNKV----------------------GPVSASDPK 295
+ E E + V+ G V G +A +
Sbjct: 369 KSPRYQGEPVEVGPLSCLLVSYARGNKVVVDAVNALLARTGLPVEALFTTLGRTAARMLQ 428
Query: 296 IVPPKRADMKRSMESLIHHFKLYTEGYHV---PVGEVYA--AVEAPKGEFGVYLISDGGN 350
V + +K L + T P E +EAP+G ++
Sbjct: 429 TVIVAQEGLKTFDALLTNIQSDETTYVKPHIDPSKEYVGHAMMEAPRGMLSHWIRIK-NG 487
Query: 351 KPYRCKIRAPGYAH---------LQAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
+ P + + E G +L D V I+ S D
Sbjct: 488 VIENYQAVVPTTWNAGPVDANGKIGPYEASLIGLKLEDPTKPLEVIRIIHSFDPCMAC 545
Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 42/101 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E+D V L RG E +++ +T + R+ V +
Sbjct: 13 IEGHLRIEVEVDENNVINKAWSSSTLWRGIEVILKGRTPMDVGLIVQRICGVCTYSHYRC 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI+IP+ + +R L + H+++
Sbjct: 73 GTEAVENALGIQIPLNAKYLRSLMLTSLFMHDHIVHFYHLH 113
>gi|157961853|ref|YP_001501887.1| nickel-dependent hydrogenase large subunit [Shewanella pealeana
ATCC 700345]
gi|157846853|gb|ABV87352.1| nickel-dependent hydrogenase large subunit [Shewanella pealeana
ATCC 700345]
Length = 567
Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats.
Identities = 44/359 (12%), Positives = 81/359 (22%), Gaps = 90/359 (25%)
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
AL+ L E + G H GGV + W
Sbjct: 189 ALSHYLKALEIQRIAAEMLAIFGGKSPHPQSIVVGGVTSVRDMLSPARLQEWKQKHQIVQ 248
Query: 185 NDISDLLTGNRIFK------------------------------QRNVNIGTVKLEDAWG 214
+ I + + Q N G + D
Sbjct: 249 DFIIRAYKADIVMAAAAFGAEPSVLGGVNVKNFLATEDFLLSDGQYMFNQGVIMNGDLGN 308
Query: 215 WGFSGVMIRGSGAAWDLRK----SQPYECYSELDFDIPI-------------GKHGDCYD 257
+ A K PY+ + D+ + G +
Sbjct: 309 VSDLDPDMIAEDATHAWYKADGPQHPYDGTTVPDYTGFVERDTVYGKLPTVDGDGKYTWV 368
Query: 258 RYLVRMMEMRESVKIIRQCVNRLLG---------------KNKVGPVSASDPKIVPPKR- 301
+ E E + V+ G VG + + +
Sbjct: 369 KSPRYNGEPVEVGPLASLLVSYARGNQVVVDSVNGLLEATGLPVGALFTTLGRTAARMLQ 428
Query: 302 -----ADMKRSMESLIHHFKLYTEGYHVPV----GEVYA--AVEAPKGEFGVYLISDGGN 350
+ ++ ++++ + + Y P E +EAP+G ++ G
Sbjct: 429 TVIVAEEGLKTFDAMLTNMQSDEATYVKPEIDSSKEYVGHAMIEAPRGMLSHWIRIKG-G 487
Query: 351 KPYRCKIRAPGYAH---------LQAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
+ P + + E G +L D V I+ S D
Sbjct: 488 LVENYQAVVPTTWNAGPVDAQGKMGPYEASLIGLKLEDPTKPLEVIRIIHSFDPCMACA 546
Score = 101 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 43/101 (42%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E+D V + L RG E +++ +T + R+ V +
Sbjct: 13 IEGHLRVEVEVDENNVIQKAWSSSTLWRGIEVILKGRTPMDVGLIVQRICGVCTYSHYRC 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LG++IP+ + +R L + H+++
Sbjct: 73 GTEAVENALGVKIPLNAKYLRSLMQTSLYMHDHIVHFYHLH 113
>gi|297568874|ref|YP_003690218.1| nickel-dependent hydrogenase large subunit [Desulfurivibrio
alkaliphilus AHT2]
gi|296924789|gb|ADH85599.1| nickel-dependent hydrogenase large subunit [Desulfurivibrio
alkaliphilus AHT2]
Length = 566
Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats.
Identities = 46/384 (11%), Positives = 85/384 (22%), Gaps = 90/384 (23%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H T ++ L+ L E + G + H G
Sbjct: 165 GHLGPFANAYWGHKTYHFTPEQNLIVLSHYLKALEVQRNAAQMLAIFGGKQPHPQSLVVG 224
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQ-------------------- 199
GV + +G + F + ++ +
Sbjct: 225 GVTCVMDLLNPNRLGEYLTKFEEVSDFMNRAYYADVKMAAEAYIGEDSVLKGSGVQNFIA 284
Query: 200 -RNVNIGTVKLEDAWGWGFSGVMIRGSGAA-------------WDLRKSQPYECYSELDF 245
R+ I + G G + R D + PY ++ ++
Sbjct: 285 ARDFQISRNEWLFDRGMVLDGDLGRAHDVDEEKITEEATHAWYHDDQSRHPYNGVTDPNY 344
Query: 246 -------------DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPV--- 289
I K + + + E + + V G KV V
Sbjct: 345 TGFRDGDTLQGRAKIIDEKGKYTWVKAPRYDDRVMEVGPLAQMLVGYARGNEKVRAVVDN 404
Query: 290 ----------------------SASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVG 327
I + + +E+L +
Sbjct: 405 FLAETGVPVPALFSTLGRTAGRMLQTKLIADHGKTTLLNLVENLKVDQETCAPYVIDKNR 464
Query: 328 E--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM---------EFLCKGHQ 376
E A + P+G G ++ + P + M E G +
Sbjct: 465 EYQGRALNDVPRGMLGHWVKIK-NGVIENYQCVVPTTWNASPMDSASQHGPYEAALIGTR 523
Query: 377 LAD------VSAILGSLDIVFGEV 394
LAD + + S D
Sbjct: 524 LADPSQPLEIIRTIHSFDPCLACA 547
Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 39/101 (38%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D V + L RG E +++ + A R+ V +
Sbjct: 14 IEGHLRMEVVVDDNNVIQDAYASSTLWRGIELILKGRDPRDAGLITQRICGVCTYSHYRV 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI P L R L S+ + H+++
Sbjct: 74 GIEAVENALGITPPYNAILTRTLMSQALFLHDHIVHFYHLH 114
>gi|301064956|ref|ZP_07205310.1| putative Periplasmic [NiFe] hydrogenase large subunit [delta
proteobacterium NaphS2]
gi|300440939|gb|EFK05350.1| putative Periplasmic [NiFe] hydrogenase large subunit [delta
proteobacterium NaphS2]
Length = 513
Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats.
Identities = 42/246 (17%), Positives = 80/246 (32%), Gaps = 30/246 (12%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M KK+R IN + G L + LE++ + V +G ++RG E L++ + L
Sbjct: 1 MHSKKNRVIPIN------RSEGDLEIHLEMENDRVVEAR-SVGTMYRGFENLLKGRAPLD 53
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R+ + Q A A++ + + IP +R L ++ + L +
Sbjct: 54 GLVITPRICGICSTAQLKAAVKALDMIADVRIPDDAIRVRNLTLMTEQMQNDLRHAFLLF 113
Query: 121 MDVGALTPPL---------------------WGFEEREKLMVFYERASGSRMHAAYFRPG 159
E +K++ G H+++ PG
Sbjct: 114 TPDFTSPAYREHPLFEEAVKRYRPLQGETVVHTIRETKKVIEIIAILGGQWPHSSFMVPG 173
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGW--GF 217
GV + +F + R + R + + L++ G
Sbjct: 174 GVVSVPGQNDISQCRSLLANFRHWYERRVLGCSLARWAEVRTLEDLDIWLDEDEAHREGE 233
Query: 218 SGVMIR 223
G IR
Sbjct: 234 VGFFIR 239
Score = 94.6 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 23/194 (11%), Positives = 54/194 (27%), Gaps = 26/194 (13%)
Query: 225 SGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIR------QCVN 278
S R PYE + ++ + + E+ + +
Sbjct: 305 SHFESHGRPRHPYEETTVVE-PPASDSEAYSWGKAPRYDGYPAETGPLAELVMASNPLIK 363
Query: 279 RLLGKNKVGPVSASDPKIVPP--KRADMKRSM-ESLIHHFKLYTEGYHVPVGEVYAAVEA 335
+L + ++V P M + E+ + + Y + G+ + +EA
Sbjct: 364 GILDREGPSVFLRQLARLVRPTFLLPVMDCWLKETGVGNEIFYRKNEQQENGQGFGLIEA 423
Query: 336 PKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLAD------V 380
+G G ++ K + ++ P + E G + + +
Sbjct: 424 HRGALGHWVTL-EHGKISQYQVITPTAWNASPRDANGIRGPWEEALIGTLVKNPEHPVEI 482
Query: 381 SAILGSLDIVFGEV 394
+ S D
Sbjct: 483 GHTIRSFDPCMVCC 496
>gi|146301646|ref|YP_001196237.1| nickel-dependent hydrogenase, large subunit [Flavobacterium
johnsoniae UW101]
gi|146156064|gb|ABQ06918.1| nickel-dependent hydrogenase, large subunit [Flavobacterium
johnsoniae UW101]
Length = 578
Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats.
Identities = 37/396 (9%), Positives = 77/396 (19%), Gaps = 102/396 (25%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H ++ A L E +++++ + G H + G
Sbjct: 162 GQLGIFANGYWGHPQMKLPPEANLMATAHYLEALEWQKEIVKVHAIFGGKNPHPNFLVGG 221
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALND---------ISDLLTGNRIFKQRNVNIGTVKLE 210
+ L + + D+L +K G
Sbjct: 222 MACSINLDDASGLNAERLAFVRQLLEEGKRFVEQVYLPDVLAIAGYYKDWGAIGGFHNFM 281
Query: 211 DAWGWGFSGV-------MIRGSGA---------------------AWDLRKSQPYECYSE 242
+ G +G + YE
Sbjct: 282 TFGDFPTQGHNNTNNDTFKFPAGVILNKDLTKVHDLDLRDLKTVEEYVNNSWYDYEGDGN 341
Query: 243 LDFDIPIGKHG------------------DCYDRYLVRMMEMRESVKIIRQCVNRLLGKN 284
G+ + + E + R V G+
Sbjct: 342 SGRQPWSGETKINYTGPKPPYTHLNVDEKYSFIKTPRWKGHAMEVGPLARMLVGYASGRE 401
Query: 285 KVGPVSASDPKIVPPKRADM---------------------KRSMESLIHHFK------- 316
+ + + A + + LI + K
Sbjct: 402 EFKDIVDGALSKLQIPAAALFSTLGRTAARALESQLVANWNLEFFDDLIKNIKNGDTKMA 461
Query: 317 ---LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL-------- 365
+ + VEAP+G +++ K + P +
Sbjct: 462 NMEKWETNTWPKESQGVGLVEAPRGALSHWIVIKDA-KVANYQQVVPSTWNASPKDPKGQ 520
Query: 366 -QAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
E +A+ + + S D
Sbjct: 521 RSPYESTLLNTPIANPELPLEIIRTIHSFDPCIACA 556
Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats.
Identities = 25/195 (12%), Positives = 52/195 (26%), Gaps = 31/195 (15%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR +E+ ++ + RG E +++ + + R V A
Sbjct: 13 IEGHLRAEVEISDGTIKEAFLSS-TMVRGLENIVKDRNPKDVWAFVQRTCGVCTSTHATA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV---------------- 123
AVE LGI +P +++R + + H+++
Sbjct: 72 SVRAVEDALGIVVPPNAEIVRNIMLGALYLHDHVVHFYHLHAFDWVDVLSGLNADPVKTS 131
Query: 124 --------------GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL 169
G + ++ A+G H P +
Sbjct: 132 QLAQSISNWPKSSPGYFSDLQKRLKKFVASGQLGIFANGYWGHPQMKLPPEANLMATAHY 191
Query: 170 VEDIGCWCDSFPSAL 184
+E + +
Sbjct: 192 LEALEWQKEIVKVHA 206
>gi|349577|gb|AAA27410.1| hydrogenase large subunit [Thiocapsa roseopersicina]
Length = 596
Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats.
Identities = 31/294 (10%), Positives = 61/294 (20%), Gaps = 52/294 (17%)
Query: 147 SGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGT 206
G A + LN+I ++ N Q V+
Sbjct: 292 GGLSSQAVMSYGDIPDHANDMSSKNLLLPRGAIINGNLNEIHEIDLRNPEEIQEFVD--- 348
Query: 207 VKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEM 266
+ + G P S + + + +
Sbjct: 349 --HSWFSYKDETRGLHPWDGVTEPNFVLGPNAVGSRTRIEALDEQAKYSWIKAPRWRGHA 406
Query: 267 RESVKIIRQCVNRLLGKNK-------------------------------VGPVSASDPK 295
E + R + G + +A +
Sbjct: 407 MEVGPLARYVIGYAKGIPEFKEPVDKVLTDLGQPLEAIFSTLGRTAARGLEASWAAHKMR 466
Query: 296 IVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRC 355
K R+ ++ + + EAP+G G +++ K
Sbjct: 467 YFQDKLVANIRAGDTATANVDNWDPKTWPKEARGVGTTEAPRGALGHWIVIK-DGKIDNY 525
Query: 356 KIRAPGYA---------HLQAMEFLCKGHQLA------DVSAILGSLDIVFGEV 394
+ P ++ A E LA ++ L S D
Sbjct: 526 QAVVPTTWNGSPRDPAGNIGAFEASLLNTPLAKADEPLEILRTLHSFDPCLACA 579
Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 38/102 (37%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR + LD V R G + RG E ++ + A + +R+ V
Sbjct: 26 IEGHLRCEVNLDENNVIRNAVSTGTMWRGLEVILRGRDPRDAWAFTERICGVCTGTHALT 85
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI IP IR + + HL++
Sbjct: 86 SVRAVEDALGIPIPENANSIRNIMHVTLQAHDHLVHFYHLHA 127
>gi|120598738|ref|YP_963312.1| nickel-dependent hydrogenase, large subunit [Shewanella sp.
W3-18-1]
gi|146293185|ref|YP_001183609.1| nickel-dependent hydrogenase, large subunit [Shewanella
putrefaciens CN-32]
gi|120558831|gb|ABM24758.1| nickel-dependent hydrogenase, large subunit [Shewanella sp.
W3-18-1]
gi|145564875|gb|ABP75810.1| nickel-dependent hydrogenase, large subunit [Shewanella
putrefaciens CN-32]
gi|319426303|gb|ADV54377.1| nickel-dependent hydrogenase large subunit [Shewanella putrefaciens
200]
Length = 567
Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats.
Identities = 43/358 (12%), Positives = 72/358 (20%), Gaps = 90/358 (25%)
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
AL+ L E + G H GGV + W
Sbjct: 189 ALSHYLKALEVQRVAAEMLAIFGGKSPHPQSLVVGGVTSVRDMLSPARLQEWKQKHAIVT 248
Query: 185 NDISDLLTGNRIFKQRNVNI------------------------------GTVKLEDAWG 214
+ I + + G + D G
Sbjct: 249 DFILRAYQADIVMAAEAFGTEPSVLGGVNVKNFMATNDFVLANGEFMFDQGVIMNGDLAG 308
Query: 215 WGFSGVMIRGSGAAWDLRKSQ-PYECYSELDFDIPIGKH----------------GDCYD 257
+ + + P Y G +
Sbjct: 309 VSDINPDLIAEDVSHAWYTADAPQHPYDGTTIPNYTGFIERDTVYGKLPTLDGDGKYSWV 368
Query: 258 RYLVRMMEMRESVKIIRQCVNRLLGKNKV----------------------GPVSASDPK 295
+ E E + V+ G V G +A +
Sbjct: 369 KSPRYQGEPVEVGPLSCLLVSYARGNKVVVDAVNGLLARTGLPVEALFTTLGRTAARMLQ 428
Query: 296 IVPPKRADMKRSMESLIHHFKLYTEGYHV---PVGEVYA--AVEAPKGEFGVYLISDGGN 350
V + +K L++ T P E +EAP+G ++
Sbjct: 429 TVIVAQEGLKTFEALLVNIQSDETTFVKPNIDPNKEYVGHAMIEAPRGMLSHWIRIK-NG 487
Query: 351 KPYRCKIRAPGYAH---------LQAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
+ P + + E G +L D V I+ S D
Sbjct: 488 VVENYQAVVPTTWNAGPVDANGKMGPYEASLIGLKLEDPTKPLEVIRIIHSFDPCMAC 545
Score = 102 bits (255), Expect = 9e-20, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 42/101 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E+D V L RG E +++ +T + R+ V +
Sbjct: 13 IEGHLRIEVEVDENNVINKAWSSSTLWRGIEVILKGRTPMDVGLIVQRICGVCTYSHYRC 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LG++IP+ + +R L + H+++
Sbjct: 73 GTEAVENALGLQIPLNAKYLRSLMQTSLYMHDHIVHFYHLH 113
>gi|118475447|ref|YP_892109.1| quinone-reactive Ni/Fe-hydrogenase large chain [Campylobacter fetus
subsp. fetus 82-40]
gi|118414673|gb|ABK83093.1| quinone-reactive Ni/Fe-hydrogenase large chain [Campylobacter fetus
subsp. fetus 82-40]
Length = 573
Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 40/105 (38%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D V + L RG E +++ + A R+ V + A
Sbjct: 14 IEGHLRIEVVVDDNSVVKEAYSGSTLWRGIETIVKGRDPRDAGFMTQRICGVCTFSHYRA 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
AVE LGI P+ +L R L + + H ++
Sbjct: 74 GIEAVENALGIVPPLNAKLTRTLMNAALFLHDHPVHFYQLHALDY 118
Score = 97.3 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 42/391 (10%), Positives = 76/391 (19%), Gaps = 99/391 (25%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H T ++ AL+ L + + + H G
Sbjct: 165 GNLGPFANAYWGHSTYKFTPEQNLIALSHYLECLRLQRTIAQAMAVFGAKQPHPQSLTVG 224
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALN-----DISDLLTGNRIFK---------------- 198
GV + + +G + F + +DL+ + +
Sbjct: 225 GVTCIMDLQDPARLGEYMVKFQEMADFINRAYYADLVMAAKAYASEPSVLNDVGTPNLIT 284
Query: 199 ---------QRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQ-PYECYSELDFDIP 248
+ G + D A K+ P Y
Sbjct: 285 YTDFQLGANEYLFEGGYILNGDVSKVYEVDENKITEEATRSWYKNDAPLHPYDGQTEPNY 344
Query: 249 IGKH---------------------GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVG 287
G + + + I +N G V
Sbjct: 345 TGFKDAQTMNAKGEMEDTKVFDIAGKYSWIKAPRYDSVPMQVGPIANIVINYAKGNKNVV 404
Query: 288 PVSASDPK-------------------------IVPPKRADMKRSMESLIHH----FKLY 318
PV K + +E+L K
Sbjct: 405 PVVDKFLKDTGLPLSAVFSTLGRTACRMIEATIVANNALKAFNNLIENLKVDQSTCAKYV 464
Query: 319 TEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA---------ME 369
+ G V P+G + + P + E
Sbjct: 465 IDNNKEYKGRFIGNV--PRGMLSHWCRIK-NGVIENWQAVVPSTWNASPKDSKGQMASYE 521
Query: 370 FLCKGHQLAD------VSAILGSLDIVFGEV 394
G ++AD + + S D
Sbjct: 522 ACLVGLKIADLKQPLEIIRKIHSYDPCIACA 552
>gi|167946815|ref|ZP_02533889.1| NADH dehydrogenase subunit D [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 64
Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats.
Identities = 45/63 (71%), Positives = 55/63 (87%)
Query: 334 EAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGE 393
EAPKGEFG Y+ISDG NKPYR KIRAPG+AHL AM+ + KGH LADV A++G++D+VFGE
Sbjct: 2 EAPKGEFGCYIISDGANKPYRLKIRAPGFAHLAAMDEMVKGHMLADVVAVIGTMDVVFGE 61
Query: 394 VDR 396
+DR
Sbjct: 62 IDR 64
>gi|56413501|ref|YP_150576.1| hydrogenase-1 large subunit [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197362426|ref|YP_002142063.1| hydrogenase-1 large subunit [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|56127758|gb|AAV77264.1| hydrogenase-1 large subunit [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197093903|emb|CAR59392.1| hydrogenase-1 large subunit [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
Length = 600
Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 38/102 (37%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D V G + RG E +++ + A + +R+ V
Sbjct: 27 IEGHMRCEVNIDSNNVITNAVSTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGTHALT 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI IP IR + + HL++
Sbjct: 87 SIRAVENALGIAIPDNANCIRNMMQATLHVHDHLVHFYHLHA 128
Score = 101 bits (253), Expect = 2e-19, Method: Composition-based stats.
Identities = 37/395 (9%), Positives = 81/395 (20%), Gaps = 114/395 (28%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H ++ A+ L + +++++ + G H + G E
Sbjct: 189 HPAMKLPPEANLLAVAHYLEALDFQKEIVKIHTVFGGKNPHPNWLVGGVPCAINLDETGA 248
Query: 172 DIGCWCDSF------------PSALNDISDLLTGNRIFKQRNVNIGTVKLED-------- 211
+ + D+L +K G + +
Sbjct: 249 VGAVNMERLNLVSSIIQKARQFCEQVYLPDVLLIASYYKDWAKIGGGLSSMNLLAYGEFP 308
Query: 212 -----------------------------------------AWGWGFSGVMIRGSGAAWD 230
W G G
Sbjct: 309 DNPNDYSASNLLLPRGAIINGRFDEIHPVDLTAPDEIQEFVTHSWYTYGNGNNDKGLHPW 368
Query: 231 LRKSQPYECYSELDFDIPI------GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKN 284
++P E + + E + R + K
Sbjct: 369 DGLTEPQLVMGEHYKGTKTFIEQVDESAKYSWIKSPRWKGHAMEVGPLARYLIGYHQNKP 428
Query: 285 KVGPVSASDPKIVPPKRADMKRSM---------------------ESLIHHFK------- 316
+ ++ + + ++ + L+ + K
Sbjct: 429 EFKEPVDQLLSVLKLPKEALFSTLGRTAARALESVWAGNTLQYFFDRLMRNLKSGDTATA 488
Query: 317 ---LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH--------- 364
L+ + EAP+G G ++ K + P +
Sbjct: 489 NVTLWEPNTWPTSTKGVGFSEAPRGALGHWIKI-ENQKIDSYQCVVPTTWNAGPRDDKGQ 547
Query: 365 LQAMEFLCKGHQLA------DVSAILGSLDIVFGE 393
+ A E G +LA ++ L S D
Sbjct: 548 IGAYEAALMGTKLAVPDQPLEILRTLHSFDPCLAC 582
>gi|197248299|ref|YP_002146505.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197212002|gb|ACH49399.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
Length = 600
Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 38/102 (37%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D V G + RG E +++ + A + +R+ V
Sbjct: 27 IEGHMRCEVNIDSNNVITNAVSTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGTHALT 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI IP IR + + HL++
Sbjct: 87 SIRAVENALGIAIPDNANCIRNMMQATLHVHDHLVHFYHLHA 128
Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 37/395 (9%), Positives = 81/395 (20%), Gaps = 114/395 (28%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H ++ A+ L + +++++ + G H + G E
Sbjct: 189 HPSMKLPPEANLLAVAHYLEALDFQKEIVKIHTVFGGKNPHPNWLVGGVPCAINLDETGA 248
Query: 172 DIGCWCDSF------------PSALNDISDLLTGNRIFKQRNVNIGTVKLED-------- 211
+ + D+L +K G + +
Sbjct: 249 VGAVNMERLNLVSSIIQKARQFCEQVYLPDVLLIASYYKDWAKIGGGLSSMNLLAYGEFP 308
Query: 212 -----------------------------------------AWGWGFSGVMIRGSGAAWD 230
W G G
Sbjct: 309 DNPNDYSASNLLLPRGAIINGRFDEIHPVDLTAPDEIQEFVTHSWYTYGNGNNDKGLHPW 368
Query: 231 LRKSQPYECYSELDFDIPI------GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKN 284
++P E + + E + R + K
Sbjct: 369 DGLTEPQLVMGEHYKGTKTFIEQVDESAKYSWIKSPRWKGHAMEVGPLARYLIGYHQNKP 428
Query: 285 KVGPVSASDPKIVPPKRADMKRSM---------------------ESLIHHFK------- 316
+ ++ + + ++ + L+ + K
Sbjct: 429 EFKEPVDQLLSVLKLPKEALFSTLGRTAARALESVWAGNTLQYFFDRLMRNLKSGDTATA 488
Query: 317 ---LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH--------- 364
L+ + EAP+G G ++ K + P +
Sbjct: 489 NVTLWEPDTWPTSAKGVGFSEAPRGALGHWIKI-ENQKIDSYQCVVPTTWNAGPRDDKGQ 547
Query: 365 LQAMEFLCKGHQLA------DVSAILGSLDIVFGE 393
+ A E G +LA ++ L S D
Sbjct: 548 IGAYEAALMGTKLAVPDQPLEILRTLHSFDPCLAC 582
>gi|317485310|ref|ZP_07944190.1| nickel-dependent hydrogenase [Bilophila wadsworthia 3_1_6]
gi|316923436|gb|EFV44642.1| nickel-dependent hydrogenase [Bilophila wadsworthia 3_1_6]
Length = 598
Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats.
Identities = 22/100 (22%), Positives = 39/100 (39%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR + ++ + V G + RG E +++ + + +R+ V A
Sbjct: 27 IEGHLRCEVNINDDNVITNAVSCGTMFRGLEIIVKDRDPRDIWAFVERICGVCTGTHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
A+E L I+IP +IR L HL++
Sbjct: 87 SVQAIEDALKIDIPDNANIIRNLMQLALWYHDHLVHFYQL 126
Score = 98.5 bits (244), Expect = 2e-18, Method: Composition-based stats.
Identities = 28/198 (14%), Positives = 45/198 (22%), Gaps = 49/198 (24%)
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR-LLGKNKVGPVSASDPKIVPP--- 299
D + + M E + R + L + V V +I P
Sbjct: 386 DIKQLDENAPYSWIKTPRWRGNMMEVGPLARTLIAYQLKQPDIVARVDDLCARIGAPVTS 445
Query: 300 -----------------KRADMKRSMESLIHHFK----------LYTEGYHVPVGEVYAA 332
M+ + LI + K +
Sbjct: 446 LQSTMGRILTRAQEAHWAADTMQVFFDKLITNLKNGDSTAVFTNKWDPDTWPQEARGVGF 505
Query: 333 VEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLADVS-- 381
EAP+G G + + K + P + L E G ++ DV
Sbjct: 506 TEAPRGALGHWTVIK-NKKVDVYQCVVPTTWNAAPRSDGGQLGPYEAALLGTKM-DVPKQ 563
Query: 382 -----AILGSLDIVFGEV 394
L S D
Sbjct: 564 PLEILRTLHSFDPCLACA 581
>gi|283836467|ref|ZP_06356208.1| hydrogenase-2 large chain [Citrobacter youngae ATCC 29220]
gi|291067845|gb|EFE05954.1| hydrogenase-2 large chain [Citrobacter youngae ATCC 29220]
Length = 567
Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ +V + G + RG E++++ + A R+ V +
Sbjct: 13 IEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHAIS 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A E L I++P+ Q IR + H+++ +
Sbjct: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113
Score = 97.7 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 39/391 (9%), Positives = 80/391 (20%), Gaps = 98/391 (25%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMH-AAYFRP 158
L H +++ A+ L E + G H
Sbjct: 162 GQLGIFANGCWGHPAMQLPPEVNLIAVAHYLQALECQRDANRVVALLGGKSPHIQNLAVG 221
Query: 159 GGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTG------------NRIFKQRNVN-IG 205
G + + S ++ +SD + + +R +
Sbjct: 222 GVANPINLDGIGTLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLERGQGAVN 281
Query: 206 TVKLEDAWGWGFSGVMIRGSGA----------------------------AWDLRKSQ-- 235
+ + G +G + G K +
Sbjct: 282 YLSAPEFPTDGKNGSFLFPGGYITNEDLSTYRPITSHSDEYLIKGIQESAKHSWYKDEAP 341
Query: 236 --PYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRL------------- 280
P+E + D+ + + + E +
Sbjct: 342 QAPWEGTTVPDYTGWSEDGKYSWVKAPTFYGKTVEVGPLANMLCKLAAKRESTHAKLNEI 401
Query: 281 --------------------LGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTE 320
LG+ V + + V + + H
Sbjct: 402 IAIYTKLTGKTIEVSQLHSTLGRIIGRTVHCCELQNVLQDQYNALIVNIGKGDHTTFVKP 461
Query: 321 GYHVPVGE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAME 369
GE +EAP+G +++ + P + + E
Sbjct: 462 DI-PATGEFKGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDEVGPYE 519
Query: 370 FLCKGHQLAD------VSAILGSLDIVFGEV 394
G +AD V + S D
Sbjct: 520 RSLVGTPIADPNKPLEVVRTIHSFDPCMSCA 550
>gi|16764883|ref|NP_460498.1| hydrogenase-1 large subunit [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|167992882|ref|ZP_02573977.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|197264696|ref|ZP_03164770.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|16420059|gb|AAL20457.1| putative hydrogenase-1 large subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|197242951|gb|EDY25571.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|205328949|gb|EDZ15713.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|261246736|emb|CBG24548.1| uptake hydrogenase-1 large subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267993443|gb|ACY88328.1| putative hydrogenase-1 large subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|312912522|dbj|BAJ36496.1| Ni/Fe-hydrogenase large subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|321224158|gb|EFX49221.1| Uptake hydrogenase large subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|332988422|gb|AEF07405.1| putative hydrogenase-1 large subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 600
Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 38/102 (37%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D V G + RG E +++ + A + +R+ V
Sbjct: 27 IEGHMRCEVNIDSNNVITNAVSTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGTHALT 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI IP IR + + HL++
Sbjct: 87 SIRAVENALGIAIPDNANCIRNMMQATLHVHDHLVHFYHLHA 128
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 37/395 (9%), Positives = 81/395 (20%), Gaps = 114/395 (28%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H ++ A+ L + +++++ + G H + G E
Sbjct: 189 HPAMKLPPEANLLAVAHYLEALDFQKEIVKIHTVFGGKNPHPNWLVGGVPCAINLDETGA 248
Query: 172 DIGCWCDSF------------PSALNDISDLLTGNRIFKQRNVNIGTVKLED-------- 211
+ + D+L +K G + +
Sbjct: 249 VGAVNMERLNLVSSIIQKARQFCEQVYLPDVLLIASYYKDWAKIGGGLSSMNLLAYGEFP 308
Query: 212 -----------------------------------------AWGWGFSGVMIRGSGAAWD 230
W G G
Sbjct: 309 DNPNDYSASNLLLPRGAIINGRFDEIHPVDLTAPDEIQEFVTHSWYTYGNGNNDKGLHPW 368
Query: 231 LRKSQPYECYSELDFDIPI------GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKN 284
++P E + + E + R + K
Sbjct: 369 DGLTEPQLVMGEHYKGTKTFIEQVDESAKYSWIKSPRWKGHAMEVGPLARYLIGYHQNKP 428
Query: 285 KVGPVSASDPKIVPPKRADMKRSM---------------------ESLIHHFK------- 316
+ ++ + + ++ + L+ + K
Sbjct: 429 EFKEPVDQLLSVLKLPKEALFSTLGRTAARALESVWAGNTLQYFFDRLMRNLKSGDTATA 488
Query: 317 ---LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH--------- 364
L+ + EAP+G G ++ K + P +
Sbjct: 489 NVTLWEPDTWPTSAKGVGFSEAPRGALGHWIKI-ANQKIDSYQCVVPTTWNAGPRDDKGQ 547
Query: 365 LQAMEFLCKGHQLA------DVSAILGSLDIVFGE 393
+ A E G +LA ++ L S D
Sbjct: 548 IGAYEAALMGTKLAVPDQPLEILRTLHSFDPCLAC 582
>gi|237729924|ref|ZP_04560405.1| hydrogenase 2 large subunit [Citrobacter sp. 30_2]
gi|226908530|gb|EEH94448.1| hydrogenase 2 large subunit [Citrobacter sp. 30_2]
Length = 567
Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ +V + G + RG E++++ + A R+ V +
Sbjct: 13 IEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHAIS 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A E L I++P+ Q IR + H+++ +
Sbjct: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113
Score = 96.9 bits (240), Expect = 4e-18, Method: Composition-based stats.
Identities = 40/393 (10%), Positives = 81/393 (20%), Gaps = 102/393 (25%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H +++ A+ L E + G H G
Sbjct: 162 GQLGIFANGCWGHPAMQLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVG 221
Query: 160 GVHQDIP---------------PELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVN- 203
GV I ++ + + + + + +R
Sbjct: 222 GVANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAF--YPEWLERGQGA 279
Query: 204 IGTVKLEDAWGWGFSGVMIRGSG------------------------------AAWDLRK 233
+ + + G +G + G AW +
Sbjct: 280 VNYLSAPEFPTDGKNGSFLFPGGYITDADLSTYRPITSHSDEYLIKGIQESAKHAWYKDE 339
Query: 234 --SQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRL----------- 280
P+E + D+ + + + E +
Sbjct: 340 APQAPWEGTTVPDYTGWSDDGKYSWVKAPTFYGKTVEVGPLANMLCKLAAKRESTHAKLN 399
Query: 281 ----------------------LGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLY 318
LG+ V + + V + + H
Sbjct: 400 EIIAIYTKLTGKTIEVSQLHSTLGRIIGRTVHCCELQNVLQDQYNALIVNIGKGDHTTFV 459
Query: 319 TEGYHVPVGE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQA 367
GE +EAP+G +++ + P + +
Sbjct: 460 KPDI-PATGEFKGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDEVGP 517
Query: 368 MEFLCKGHQLAD------VSAILGSLDIVFGEV 394
E G +AD V + S D
Sbjct: 518 YERSLVGTPIADPNKPLEVVRTIHSFDPCMSCA 550
>gi|3378680|emb|CAA74587.1| uptake hydrogenase [Rhodobacter sphaeroides]
Length = 596
Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 41/102 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D + + R G + RG E +++ + A + +R+ V
Sbjct: 25 IEGHMRCEVNVDDQGIIRNAVSTGTMWRGLEVILKGRDPRDAWAFTERICGVCTGTHALT 84
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI IP IR + +I H+++
Sbjct: 85 SVRAVEDALGISIPDNANSIRNMMQLNLQIHDHVVHFYHLHA 126
Score = 98.5 bits (244), Expect = 2e-18, Method: Composition-based stats.
Identities = 25/234 (10%), Positives = 53/234 (22%), Gaps = 48/234 (20%)
Query: 207 VKLEDAWGWGFSGVMIR-GSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMME 265
+ +G G + G + P + + + +
Sbjct: 346 FVDHSWYAYGEPGRGLHPWDGVTEPRYELGPNAKGTRTNILELDEAAKYSWIKAPRWKGH 405
Query: 266 MRESVKIIRQCVNRLLGKN---------------KVGPVSASDPKIVPPKRADM------ 304
E + R V G V + ++ + P
Sbjct: 406 AMEVGPLARYIVGYAKGHEDIKNQVEGLLRTMDLPVSALFSTLGRTAPRALEAEYCCRLQ 465
Query: 305 KRSMESLIHHFK----------LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYR 354
K + LI + K + + EAP+G G ++ +
Sbjct: 466 KHFFDKLITNVKNGDSSTANVEKWEPRTWPKEAKGVGMTEAPRGALGHWIRIK-DGRINN 524
Query: 355 CKIRAPGYA---------HLQAMEFLCKGHQLA------DVSAILGSLDIVFGE 393
+ P ++ A E ++ ++ L S D
Sbjct: 525 YQCVVPTTWNGSPRDAAGNIGAFEASLLETKMDRPEEPVEILRTLHSFDPCLAC 578
>gi|301158066|emb|CBW17562.1| uptake hydrogenase-1 large subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|323129806|gb|ADX17236.1| putative hydrogenase-1 large subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
Length = 600
Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 38/102 (37%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D V G + RG E +++ + A + +R+ V
Sbjct: 27 IEGHMRCEVNIDSNNVITNAVSTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGTHALT 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI IP IR + + HL++
Sbjct: 87 SIRAVENALGIAIPDNANCIRNMMQATLHVHDHLVHFYHLHA 128
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 37/395 (9%), Positives = 81/395 (20%), Gaps = 114/395 (28%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H ++ A+ L + +++++ + G H + G E
Sbjct: 189 HPAMKLPPEANLLAVAHYLEALDFQKEIVKIHTVFGGKNPHPNWLVGGVPCAINLDETGA 248
Query: 172 DIGCWCDSF------------PSALNDISDLLTGNRIFKQRNVNIGTVKLED-------- 211
+ + D+L +K G + +
Sbjct: 249 VGAVNMERLNLVSSIIQKARQFCEQVYLPDVLLIASYYKDWAKIGGGLSSMNLLAYGEFP 308
Query: 212 -----------------------------------------AWGWGFSGVMIRGSGAAWD 230
W G G
Sbjct: 309 DNPNDYSASNLLLPRGAIINGRFDEIHPVDLTAPDEIQEFVTHSWYTYGNGNNDKGLHPW 368
Query: 231 LRKSQPYECYSELDFDIPI------GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKN 284
++P E + + E + R + K
Sbjct: 369 DGLTEPQLVMGEHYKGTKTFIEQVDESAKYSWIKSPRWKGHAMEVGPLARYLIGYHQNKP 428
Query: 285 KVGPVSASDPKIVPPKRADMKRSM---------------------ESLIHHFK------- 316
+ ++ + + ++ + L+ + K
Sbjct: 429 EFKEPVDQLLSVLKLPKEALFSTLGRTAARALESVWAGNTLQYFFDRLMRNLKSGDTATA 488
Query: 317 ---LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH--------- 364
L+ + EAP+G G ++ K + P +
Sbjct: 489 NVTLWEPDTWPTSAKGVGFSEAPRGALGHWIKI-ANQKIDSYQCVVPTTWNAGPRDDKGQ 547
Query: 365 LQAMEFLCKGHQLA------DVSAILGSLDIVFGE 393
+ A E G +LA ++ L S D
Sbjct: 548 IGAYEAALMGTKLAVPDQPLEILRTLHSFDPCLAC 582
>gi|161614027|ref|YP_001587992.1| hypothetical protein SPAB_01766 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|167550009|ref|ZP_02343767.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|168229926|ref|ZP_02654984.1| nickel-dependent hydrogenase family protein [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|168235627|ref|ZP_02660685.1| nickel-dependent hydrogenase superfamily protein [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|168241067|ref|ZP_02665999.1| nickel-dependent hydrogenase family protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|168260291|ref|ZP_02682264.1| nickel-dependent hydrogenase family protein [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|168463037|ref|ZP_02696968.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|168819302|ref|ZP_02831302.1| nickel-dependent hydrogenase family protein [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|194444301|ref|YP_002040787.1| [Ni/Fe] hydrogenase large subunit [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194447873|ref|YP_002045576.1| [Ni/Fe] hydrogenase large subunit [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194472551|ref|ZP_03078535.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194734103|ref|YP_002114555.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|198244043|ref|YP_002215601.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|200390642|ref|ZP_03217253.1| nickel-dependent hydrogenase family protein [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|205352761|ref|YP_002226562.1| uptake hydrogenase-1 large subunit [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|207856962|ref|YP_002243613.1| uptake hydrogenase-1 large subunit [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|224583957|ref|YP_002637755.1| hydrogenase-1 large subunit [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|238911768|ref|ZP_04655605.1| putative hydrogenase-1 large subunit [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|161363391|gb|ABX67159.1| hypothetical protein SPAB_01766 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194402964|gb|ACF63186.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194406177|gb|ACF66396.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194458915|gb|EDX47754.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194709605|gb|ACF88826.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|195634290|gb|EDX52642.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|197291203|gb|EDY30556.1| nickel-dependent hydrogenase superfamily protein [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|197938559|gb|ACH75892.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|199603087|gb|EDZ01633.1| nickel-dependent hydrogenase family protein [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|205272542|emb|CAR37443.1| uptake hydrogenase-1 large subunit [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205325047|gb|EDZ12886.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205335521|gb|EDZ22285.1| nickel-dependent hydrogenase family protein [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|205339091|gb|EDZ25855.1| nickel-dependent hydrogenase family protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|205343892|gb|EDZ30656.1| nickel-dependent hydrogenase family protein [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|205350853|gb|EDZ37484.1| nickel-dependent hydrogenase family protein [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|206708765|emb|CAR33093.1| uptake hydrogenase-1 large subunit [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|224468484|gb|ACN46314.1| putative hydrogenase-1 large subunit [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|320085977|emb|CBY95751.1| hydrogenase large chain [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|322616157|gb|EFY13073.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322620902|gb|EFY17761.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322623007|gb|EFY19849.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322628297|gb|EFY25085.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322634702|gb|EFY31433.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322638731|gb|EFY35426.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322641104|gb|EFY37748.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322646532|gb|EFY43040.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322649103|gb|EFY45544.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322654520|gb|EFY50842.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322660761|gb|EFY56994.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322665137|gb|EFY61325.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322667881|gb|EFY64041.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322671707|gb|EFY67828.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322677246|gb|EFY73310.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322680090|gb|EFY76129.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322685480|gb|EFY81476.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|323193690|gb|EFZ78894.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323199997|gb|EFZ85085.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323204728|gb|EFZ89725.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323205706|gb|EFZ90669.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|323214119|gb|EFZ98880.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323216789|gb|EGA01513.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323222843|gb|EGA07204.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323225182|gb|EGA09428.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323231895|gb|EGA16002.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323234422|gb|EGA18509.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323237873|gb|EGA21932.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323243526|gb|EGA27545.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323249523|gb|EGA33437.1| hydrogenase large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323254232|gb|EGA38050.1| hydrogenase large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323255454|gb|EGA39219.1| hydrogenase large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323266645|gb|EGA50132.1| hydrogenase large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323271609|gb|EGA55029.1| hydrogenase large subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|326623346|gb|EGE29691.1| Nickel-dependent hydrogenase, large subunit [Salmonella enterica
subsp. enterica serovar Dublin str. 3246]
gi|326627830|gb|EGE34173.1| Nickel-dependent hydrogenase, large subunit [Salmonella enterica
subsp. enterica serovar Gallinarum str. 9]
Length = 600
Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 38/102 (37%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D V G + RG E +++ + A + +R+ V
Sbjct: 27 IEGHMRCEVNIDSNNVITNAVSTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGTHALT 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI IP IR + + HL++
Sbjct: 87 SIRAVENALGIAIPDNANCIRNMMQATLHVHDHLVHFYHLHA 128
Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats.
Identities = 37/395 (9%), Positives = 81/395 (20%), Gaps = 114/395 (28%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H ++ A+ L + +++++ + G H + G E
Sbjct: 189 HPAMKLPPEANLLAVAHYLEALDFQKEIVKIHTVFGGKNPHPNWLVGGVPCAINLDETGA 248
Query: 172 DIGCWCDSF------------PSALNDISDLLTGNRIFKQRNVNIGTVKLED-------- 211
+ + D+L +K G + +
Sbjct: 249 VGAVNMERLNLVSSIIQKARQFCEQVYLPDVLLIASYYKDWAKIGGGLSSMNLLAYGEFP 308
Query: 212 -----------------------------------------AWGWGFSGVMIRGSGAAWD 230
W G G
Sbjct: 309 DNPNDYSASNLLLPRGAIINGRFDEIHPVDLTAPDEIQEFVTHSWYTYGNGNNDKGLHPW 368
Query: 231 LRKSQPYECYSELDFDIPI------GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKN 284
++P E + + E + R + K
Sbjct: 369 DGLTEPQLVMGEHYKGTKTFIEQVDESAKYSWIKSPRWKGHAMEVGPLARYLIGYHQNKP 428
Query: 285 KVGPVSASDPKIVPPKRADMKRSM---------------------ESLIHHFK------- 316
+ ++ + + ++ + L+ + K
Sbjct: 429 EFKEPVDQLLSVLKLPKEALFSTLGRTAARALESVWAGNTLQYFFDRLMRNLKSGDTATA 488
Query: 317 ---LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH--------- 364
L+ + EAP+G G ++ K + P +
Sbjct: 489 NVTLWEPDTWPTSAKGVGFSEAPRGALGHWIKI-ENQKIDSYQCVVPTTWNAGPRDDKGQ 547
Query: 365 LQAMEFLCKGHQLA------DVSAILGSLDIVFGE 393
+ A E G +LA ++ L S D
Sbjct: 548 IGAYEAALMGTKLAVPDQPLEILRTLHSFDPCLAC 582
>gi|237730273|ref|ZP_04560754.1| hydrogenase-1 large subunit [Citrobacter sp. 30_2]
gi|226905812|gb|EEH91730.1| hydrogenase-1 large subunit [Citrobacter sp. 30_2]
Length = 597
Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats.
Identities = 20/104 (19%), Positives = 42/104 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + ++ + + G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNINEQNIITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
A+E +GI++P +IR + HL++ A
Sbjct: 87 SVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130
Score = 88.5 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 23/198 (11%), Positives = 48/198 (24%), Gaps = 47/198 (23%)
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKN---KVGPVSASDPKI-- 296
+ D + + + E + R + G + S K+
Sbjct: 383 DTDIKQLNEQERYSWIKAPRWRGHAMEVGPLARTLIAYHKGDAATIESVDRMMSALKLPL 442
Query: 297 ---------VPPKRADMKRSMESLIHHF-----------------KLYTEGYHVPVGEVY 330
+ + + + ++ L + F + +
Sbjct: 443 SGMQSTLGRILCRAHEAQWAVSKLQYFFDKLMTNLKNGNLATANTEKWEPESWPQHCRGI 502
Query: 331 AAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLA--- 378
EAP+G G + K + P + + A E G Q+A
Sbjct: 503 GFTEAPRGALGHWASIR-DQKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMGTQMAIPD 561
Query: 379 ---DVSAILGSLDIVFGE 393
++ L S D
Sbjct: 562 QPLEILRTLHSFDPCLAC 579
>gi|325576995|ref|ZP_08147566.1| hydrogenase-2 large chain [Haemophilus parainfluenzae ATCC 33392]
gi|325160953|gb|EGC73072.1| hydrogenase-2 large chain [Haemophilus parainfluenzae ATCC 33392]
Length = 569
Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 1/104 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ +V G + RG E +++ A R+ V
Sbjct: 15 IEGHLRIDCEIENGVVTNA-WSSGTMWRGMENIVKGADPRDAWMIMQRICGVCTTVHAII 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
AVE +G ++P+ Q IR + I H+++ +
Sbjct: 74 SVRAVEDAIGAKVPVNAQYIRNMILAAHSIHDHIVHFYQLSAMD 117
Score = 97.3 bits (241), Expect = 4e-18, Method: Composition-based stats.
Identities = 27/223 (12%), Positives = 54/223 (24%), Gaps = 55/223 (24%)
Query: 225 SGAAWDLRKSQPYECYSELDFDIPIGKHGD---CYDRYLVRMMEMRESVKIIRQCVNRLL 281
SG +P E ++ L G D + + ++ E + + L
Sbjct: 332 SGKHAWYEDDEPLEPWAGLTRPKYTGWQDDGKYSWVKAPTFYGKVVEVGPLA-YLMCGLA 390
Query: 282 GKNKVGPVSASDPKIVPPKR----------------------------ADMKRSMESLIH 313
+ ++ K + K + + LI
Sbjct: 391 ANDTPTVNHFNELKGIYEKLTGNTLTTDQLHSTLGRIIGRTVHCCAINDILSAQWQMLID 450
Query: 314 HFKL-----YTEGYHVPVGE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH-- 364
+ Y + GE E P+G +++ + + P +
Sbjct: 451 NIAKGDMTAYIKTDIPASGEFRGVGFGEVPRGMLSHWVVIK-DGRIENYQAVVPSTWNAG 509
Query: 365 -------LQAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
+ E G +AD V + S D
Sbjct: 510 PRNEQDQMGPYELSIIGTPVADPAKPLEVVRTIHSFDPCMSCA 552
>gi|204927899|ref|ZP_03219100.1| nickel-dependent hydrogenase family protein [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|204323241|gb|EDZ08437.1| nickel-dependent hydrogenase family protein [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
Length = 600
Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 38/102 (37%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D V G + RG E +++ + A + +R+ V
Sbjct: 27 IEGHMRCEVNIDSNNVITNAVSTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGTHALT 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI IP IR + + HL++
Sbjct: 87 SIRAVENALGIAIPDNANCIRNMMQATLHVHDHLVHFYHLHA 128
Score = 101 bits (253), Expect = 2e-19, Method: Composition-based stats.
Identities = 37/395 (9%), Positives = 81/395 (20%), Gaps = 114/395 (28%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H ++ A+ L + +++++ + G H + G E
Sbjct: 189 HPAMKLPPEANLLAVAHYLEALDFQKEIVKIHTVFGGKNPHPNWLVGGVPCAINLDETGA 248
Query: 172 DIGCWCDSF------------PSALNDISDLLTGNRIFKQRNVNIGTVKLED-------- 211
+ + D+L +K G + +
Sbjct: 249 VGAVNMERLNLVSSIIQKARQFCEQVYLPDVLLIASYYKDWAKIGGGLSSMNLLAYGEFP 308
Query: 212 -----------------------------------------AWGWGFSGVMIRGSGAAWD 230
W G G
Sbjct: 309 DNPNDYSASNLLLPRGAIINGRFDEIHPIDLTAPDEIQEFVTHSWYTYGNGNNDKGLHPW 368
Query: 231 LRKSQPYECYSELDFDIPI------GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKN 284
++P E + + E + R + K
Sbjct: 369 DGLTEPQLVMGEHYKGTKTFIEQVDESAKYSWIKSPRWKGHAMEVGPLARYLIGYHQNKP 428
Query: 285 KVGPVSASDPKIVPPKRADMKRSM---------------------ESLIHHFK------- 316
+ ++ + + ++ + L+ + K
Sbjct: 429 EFKEPVDQLLSVLKLPKEALFSTLGRTAARALESVWAGNTLQYFFDRLMRNLKSGDTATA 488
Query: 317 ---LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH--------- 364
L+ + EAP+G G ++ K + P +
Sbjct: 489 NVTLWEPDTWPTSTKGVGFSEAPRGALGHWIKI-ENQKIDSYQCVVPTTWNAGPRDDKGQ 547
Query: 365 LQAMEFLCKGHQLA------DVSAILGSLDIVFGE 393
+ A E G +LA ++ L S D
Sbjct: 548 IGAYEAALMGTKLAVPDQPLEILRTLHSFDPCLAC 582
>gi|85543887|pdb|1WUH|L Chain L, Three-Dimensional Structure Of The Ni-A State Of
[nife]hydrogenase From Desulufovibrio Vulgaris Miyazaki
F
gi|85543889|pdb|1WUI|L Chain L, Ultra-High Resolution Structure Of The Ni-A State Of
[nife]hydrogenase From Desulufovibrio Vulgaris Miyazaki
F
Length = 534
Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats.
Identities = 42/356 (11%), Positives = 82/356 (23%), Gaps = 75/356 (21%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDI--PPEL 169
H ++ A L + K H + GGV P+
Sbjct: 177 HPAYYLDPETNLIATAHYLEALRLQVKAARAMAVFGAKNPHTQFTVVGGVTCYDALTPQR 236
Query: 170 VEDIGCWCDSFPSALNDIS--DLLTGNRIFKQRNVNIG---------------------- 205
+ + + ++++ DLL +K G
Sbjct: 237 IAEFEALWKETKAFVDEVYIPDLLVVAAAYKDWTQYGGTDNFITFGEFPKDEYDLNSRFF 296
Query: 206 ---TVKLEDAWGWGFSGVMIRGSGAAWDLRK----SQPYECYSELDFDIPIGKHGDCYDR 258
V D M + P++ ++ + G + +
Sbjct: 297 KPGVVFKRDFKNIKPFDKMQIEEHVRHSWYEGAEARHPWKGQTQPKYTDLHGDDRYSWMK 356
Query: 259 YLVRMMEMRESVKIIRQCVNRLLGKNKVGPV------------------------SASDP 294
M E E+ + + + G KV V +
Sbjct: 357 APRYMGEPMETGPLAQVLIAYSQGHPKVKAVTDAVLAKLGVGPEALFSTLGRTAARGIET 416
Query: 295 KIVPPKRADMKRSMESLIHHFKLY--TEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKP 352
++ M + + I E V AP+G ++ K
Sbjct: 417 AVIAEYVGVMLQEYKDNIAKGDNVICAPWEMPKQAEGVGFVNAPRGGLSHWIRI-EDGKI 475
Query: 353 YRCKIRAPGYA--------H-LQAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
++ P + L +E G +AD + + S D
Sbjct: 476 GNFQLVVPSTWTLGPRCDKNKLSPVEASLIGTPVADAKRPVEILRTVHSFDPXIAC 531
Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 1/105 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E++ V+ L RG E +++ + A + R V A
Sbjct: 15 IEGHLRIEVEVENGKVKNA-YSSSTLFRGLEIILKGRDPRDAQHFTQRTCGVXTYTHALA 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
V+ +G+ IP IR L + H+++
Sbjct: 74 STRCVDNAVGVHIPKNATYIRNLVLGAQYLHDHIVHFYHLHALDF 118
>gi|213618586|ref|ZP_03372412.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
Length = 316
Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ +V + G + RG E++++ + A R+ V +
Sbjct: 13 IEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHAIS 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A E L I++P+ Q IR + H+++ +
Sbjct: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113
>gi|74356065|dbj|BAE44403.1| hydrogen-uptake [NiFe] hydrogenase large subunit [Lebetimonas
acidiphila]
Length = 376
Score = 105 bits (263), Expect = 9e-21, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 42/101 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + LD V + L RG E +++ + A R+ V + A
Sbjct: 13 IEGHLRVEVVLDDNNVIKDAYSSATLWRGIEVILKGRDPRDAGFMTQRICGVCTYSHYKA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+AVE LGIE P+ +L R L + H+++
Sbjct: 73 GIMAVEDALGIEPPLNAKLTRELMNIALFFHDHMVHFYQLH 113
Score = 39.5 bits (91), Expect = 0.99, Method: Composition-based stats.
Identities = 25/152 (16%), Positives = 43/152 (28%), Gaps = 10/152 (6%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H T ++ AL+ L E + G H GGV + E
Sbjct: 179 HPTMKFTPEQNLIALSHYLKTLEIQRIAAQAMAIFGGKNPHPQSLTVGGVTCAMDLENPS 238
Query: 172 DIGCWCDSFPSALN-----DISDLLT-----GNRIFKQRNVNIGTVKLEDAWGWGFSGVM 221
+G + F + +D++ GN + N+G G + +
Sbjct: 239 RLGEYLQKFQDLADYANRAYYADIVMAAAAFGNEPSVVQPTNLGNFLTYREHQVGANEWL 298
Query: 222 IRGSGAAWDLRKSQPYECYSELDFDIPIGKHG 253
SG + S+ YE +
Sbjct: 299 FDASGYIKNHDLSKFYEIDESKIAEDVTHSWY 330
>gi|167624186|ref|YP_001674480.1| nickel-dependent hydrogenase large subunit [Shewanella halifaxensis
HAW-EB4]
gi|167354208|gb|ABZ76821.1| nickel-dependent hydrogenase large subunit [Shewanella halifaxensis
HAW-EB4]
Length = 567
Score = 105 bits (263), Expect = 9e-21, Method: Composition-based stats.
Identities = 43/359 (11%), Positives = 74/359 (20%), Gaps = 90/359 (25%)
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
AL+ L E + G H GGV + W
Sbjct: 189 ALSHYLKALEVQRVAAEMLAIFGGKSPHPQSIVVGGVTSVRDMLSPARLQEWKQKHEFVN 248
Query: 185 NDISDLLTGNRIFK------------------------------QRNVNIGTVKLEDAWG 214
+ I + + Q N G + D
Sbjct: 249 DFIIRAYKADIVMAAAAFGSEPSVLGGLNVPNFLATEDFVTTDGQFMFNQGVIMNGDLAN 308
Query: 215 WGFSGVMIRGSGAAWDLRK----SQPYECYSELDFDIPIGKH-------------GDCYD 257
M K PY+ + D+ + + +
Sbjct: 309 VSDLDPMQIVEDVTHAWYKADAPQHPYDGTTIPDYTSLVERETVYGKLPTLNEDGKYSWV 368
Query: 258 RYLVRMMEMRESVKIIRQCVNRLLGKNKVGP-------------------------VSAS 292
+ E E + V+ G V
Sbjct: 369 KSPRYNGEPIEVGPLASILVSYARGNQVVVDAVNGLLETTGLPIEALFTTLGRTAARMLH 428
Query: 293 DPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGE--VYAAVEAPKGEFGVYLISDGGN 350
+ + ++ YT+ P E +A +EAP+G ++
Sbjct: 429 TCIVADECLKTFDALITNIQSDESTYTKPEIDPNKEYLGHAMIEAPRGMLSHWIRIK-NG 487
Query: 351 KPYRCKIRAPGYAH---------LQAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
+ P + + E G QL D V ++ S D
Sbjct: 488 LVENYQAVVPTTWNAGPVDELGQMGPYEASLIGLQLEDPTKPLEVLRVIHSFDPCMACA 546
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 40/101 (39%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E+D V L RG E +++ +T + R+ V +
Sbjct: 13 IEGHLRIEVEVDQNNVITKAWASSTLWRGIEVILKGRTPMDVGLIVQRICGVCTYSHYRC 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LG++IP + +R L + H++
Sbjct: 73 GTEAVENALGVKIPPNAKYLRSLMQSSLHMHDHIVQFYQLH 113
>gi|89093648|ref|ZP_01166595.1| hydrogenase protein large subunit [Oceanospirillum sp. MED92]
gi|89082044|gb|EAR61269.1| hydrogenase protein large subunit [Oceanospirillum sp. MED92]
Length = 602
Score = 105 bits (263), Expect = 9e-21, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 43/102 (42%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D + R G + RG E ++ + A + +R+ V
Sbjct: 25 IEGHMRCEVNVDENNIIRNAVSTGTMWRGLEVILNGRDPRDAWAFVERICGVCTGTHALT 84
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI++P+ LIR + + +I H+++
Sbjct: 85 SVRAVEDALGIQVPLNAHLIRHMMDKTLQIHDHIVHFYHLHA 126
Score = 100 bits (250), Expect = 4e-19, Method: Composition-based stats.
Identities = 27/259 (10%), Positives = 55/259 (21%), Gaps = 55/259 (21%)
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
D + + V ++ G G + G + P ++ D
Sbjct: 328 WDEVLPVDVRDPEQVQEFVDHSWYSYQGGKKG-LHPWDGETDPNFELGPNTVGTKTDIKE 386
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNK---------------------- 285
+ + E + R + GK
Sbjct: 387 LDESAKYSWIKAPRWRGHAMEVGPLARYIIAYASGKEYVQEQVDTSLAAFNQATGHDLGI 446
Query: 286 ----VGPVSASDPKIVPP--KRADMKRSMESLIHHFK----------LYTEGYHVPVGEV 329
+ + + + M L+ + K + +
Sbjct: 447 KQFLPSTLGRTLARALECQLCCDTMLEDWYQLVDNIKAGDSSTANVEKWDPSTWPKEAKG 506
Query: 330 YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA---------HLQAMEFLCKGHQL--A 378
EAP+G G ++ K + P ++ A E +
Sbjct: 507 VGINEAPRGALGHWIKIK-DGKIENYQAVVPTTWNGSPRDSQGNIGAFEASLLNTPMERP 565
Query: 379 D----VSAILGSLDIVFGE 393
D + L S D
Sbjct: 566 DEPVEILRTLHSFDPCLAC 584
>gi|268590649|ref|ZP_06124870.1| hydrogenase-2 large chain [Providencia rettgeri DSM 1131]
gi|291314042|gb|EFE54495.1| hydrogenase-2 large chain [Providencia rettgeri DSM 1131]
Length = 567
Score = 105 bits (263), Expect = 9e-21, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ V + G + RG E++++ K A R+ V
Sbjct: 13 IEGHLRIDCEIEDGKVTKA-WASGTMWRGMEEIVKGKDPRDAWMIMQRICGVCTTVHGIV 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+E L I++P+ Q IR + I H+++ +
Sbjct: 72 SVRTIESALNIDVPVNAQYIRNMILAAHTIQDHIVHFYQLSA 113
Score = 95.0 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 12/82 (14%), Positives = 21/82 (25%), Gaps = 16/82 (19%)
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLA 378
+ E P+G +++ K + P + E G +A
Sbjct: 470 KGVGFGEVPRGLLSHWVVIK-DGKIENYQAVVPSTWNSGPRNFNDEPGPYEQALVGTPVA 528
Query: 379 D------VSAILGSLDIVFGEV 394
D V + S D
Sbjct: 529 DPSKPLEVVRTIHSFDPCMSCA 550
>gi|251792565|ref|YP_003007291.1| hydrogenase 2 large subunit [Aggregatibacter aphrophilus NJ8700]
gi|247533958|gb|ACS97204.1| hydrogenase-2 large chain [Aggregatibacter aphrophilus NJ8700]
Length = 569
Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 1/104 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ +V G + RG E +++ A R+ V
Sbjct: 15 IEGHLRIDCEIENGVVTNA-WSSGTMWRGMENIVKGADPRDAWMIMQRICGVCTTVHAII 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
AVE +G ++P+ Q IR + I H+++ +
Sbjct: 74 SVRAVEDAIGAKVPVNAQYIRNMILAAHSIHDHIVHFYQLSAMD 117
Score = 96.6 bits (239), Expect = 6e-18, Method: Composition-based stats.
Identities = 14/94 (14%), Positives = 25/94 (26%), Gaps = 18/94 (19%)
Query: 318 YTEGYHVPVGE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQ 366
Y + GE E P+G +++ + + P + +
Sbjct: 460 YIKTDIPASGEFRGVGFGEVPRGMLSHWVVIK-DGRIENYQAVVPSTWNAGPRNEQDQMG 518
Query: 367 AMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
E G +AD V + S D
Sbjct: 519 PYELSIIGTPVADPTKPLEVVRTIHSFDPCMSCA 552
>gi|213612523|ref|ZP_03370349.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
Length = 257
Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 42/104 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D + V G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNIDEQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
A+E +GI++P +IR + HL++ A
Sbjct: 87 SVYAIEDAIGIQVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130
>gi|283787131|ref|YP_003366996.1| hydrogenase-2 large subunit [Citrobacter rodentium ICC168]
gi|282950585|emb|CBG90254.1| hydrogenase-2 large subunit [Citrobacter rodentium ICC168]
Length = 567
Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ +V + G + RG E++++ + A R+ V +
Sbjct: 13 IEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHAIS 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A E L I++P+ Q IR + H+++ +
Sbjct: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113
Score = 95.8 bits (237), Expect = 9e-18, Method: Composition-based stats.
Identities = 39/390 (10%), Positives = 82/390 (21%), Gaps = 96/390 (24%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMH-AAYFRP 158
L H +++ A+ L E + G H
Sbjct: 162 GQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVG 221
Query: 159 GGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTG------------NRIFKQRNVN-IG 205
G + L S ++ +SD + + +R +
Sbjct: 222 GVANPINLDGLGVLNLERLMYIKSFIDKLSDFVEHVYKVDTAVIAAFYPEWLERGKGAVN 281
Query: 206 TVKLEDAWGWGFSGVMIRGSG------------------------------AAWDLRK-- 233
+ + G +G + G AW +
Sbjct: 282 YLSAPEFPTDGKNGSFLFPGGYIENADLATYRPISSHSDEYLIKGIQESAKHAWYKDEAP 341
Query: 234 SQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASD 293
P+E + +++ + + + E + V G+
Sbjct: 342 QAPWEGTTIPEYNGWADDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQAKLNEI 401
Query: 294 PKIVPPKRADMKR-------------------------------SMESLIHHFKLYTEGY 322
I + ++
Sbjct: 402 VAIYQKLTGKTLEVAQLHSTLGRIIGRTVHCCELQGILQNQYSALIANIGKGDHTTFVKP 461
Query: 323 HVPV-GE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEF 370
++P GE +EAP+G +++ + P + + E
Sbjct: 462 NIPATGEFKGVGFLEAPRGMLSHWMVIR-DGIISNYQAVVPSTWNSGPRNFNDDVGPYEQ 520
Query: 371 LCKGHQLAD------VSAILGSLDIVFGEV 394
G +AD V + S D
Sbjct: 521 SLVGTPIADPEKPLEVVRTIHSFDPCMACA 550
>gi|157148561|ref|YP_001455880.1| hydrogenase 2 large subunit [Citrobacter koseri ATCC BAA-895]
gi|157085766|gb|ABV15444.1| hypothetical protein CKO_04388 [Citrobacter koseri ATCC BAA-895]
Length = 567
Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ +V + G + RG E++++ + A R+ V +
Sbjct: 13 IEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHAIS 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A E L I++P+ Q IR + H+++ +
Sbjct: 72 SVRAAESALKIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113
Score = 98.5 bits (244), Expect = 2e-18, Method: Composition-based stats.
Identities = 39/393 (9%), Positives = 83/393 (21%), Gaps = 102/393 (25%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H +++ A+ L E + G H G
Sbjct: 162 GQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVG 221
Query: 160 GVHQDIP---------------PELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVN- 203
GV I ++ + + + + + +R
Sbjct: 222 GVANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAF--YPEWLERGKGA 279
Query: 204 IGTVKLEDAWGWGFSGVMIRGSG------------------------------AAWDLRK 233
+ + + G +G + G AW +
Sbjct: 280 VNYLSAPEFPTDGKNGSFLFPGGYIQNADLSTYRPIASHSDEYLIKGIQESAKHAWYKDE 339
Query: 234 --SQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRL----------- 280
+P+E + ++ + + + E + V
Sbjct: 340 APQEPWEGTTVPEYTGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTKAKLN 399
Query: 281 ----------------------LGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLY 318
LG+ V + + + + + H
Sbjct: 400 EIIAIYQKLTGKTLEVAQLHSTLGRIIGRTVHCCELQGILQNQYSALIANIGKGDHTTFV 459
Query: 319 TEGYHVPVGE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQA 367
GE +EAP+G +++ + P + +
Sbjct: 460 KPDI-PATGEFKGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDEVGP 517
Query: 368 MEFLCKGHQLAD------VSAILGSLDIVFGEV 394
E G +AD V + S D
Sbjct: 518 YEQSLVGTPIADPEKPLEVVRTIHSFDPCMACA 550
>gi|315634306|ref|ZP_07889593.1| hydrogenase-2 large chain [Aggregatibacter segnis ATCC 33393]
gi|315476896|gb|EFU67641.1| hydrogenase-2 large chain [Aggregatibacter segnis ATCC 33393]
Length = 569
Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 1/104 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ +V G + RG E +++ A R+ V
Sbjct: 15 IEGHLRIDCEIENGVVTNA-WSSGTMWRGMENIVKGADPRDAWMIMQRICGVCTTVHAII 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
AVE +G ++P+ Q IR + I H+++ +
Sbjct: 74 SVRAVEDAIGAKVPVNAQYIRNMILAAHSIHDHIVHFYQLSAMD 117
Score = 97.7 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 28/223 (12%), Positives = 55/223 (24%), Gaps = 55/223 (24%)
Query: 225 SGAAWDLRKSQPYECYSELDFDIPIGKHGD---CYDRYLVRMMEMRESVKIIRQCVNRLL 281
SG +P E ++ L G D + + ++ E + + L
Sbjct: 332 SGKHAWYEDDEPLEPWAGLTRPKYTGWQDDGKYSWVKAPTFYGKVVEVGPLA-YLICGLA 390
Query: 282 GKNKVGPVSASDPKIVPPKR----------------------------ADMKRSMESLIH 313
+K ++ K + K + + LI
Sbjct: 391 ANDKPTVTHFNELKGIYEKLTGNTLTTDQLHSTLGRIIGRTVHCCAINDILSAQWQMLID 450
Query: 314 HFKL-----YTEGYHVPVGE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH-- 364
+ Y + GE E P+G +++ + + P +
Sbjct: 451 NIAKGDMTAYIKTDIPASGEFRGVGFGEVPRGMLSHWVVIK-DGRIENYQAVVPSTWNAG 509
Query: 365 -------LQAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
+ E G +AD V + S D
Sbjct: 510 PRNEQDQMGPYELSIIGTPVADPTKPLEVVRTIHSFDPCMSCA 552
>gi|301155289|emb|CBW14755.1| hydrogenase 2, large subunit [Haemophilus parainfluenzae T3T1]
Length = 569
Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 1/104 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ +V G + RG E +++ A R+ V
Sbjct: 15 IEGHLRIDCEIENGVVTNA-WSSGTMWRGMENIVKGADPRDAWMIMQRICGVCTTVHAII 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
AVE +G ++P+ Q IR + I H+++ +
Sbjct: 74 SVRAVEDAIGAKVPVNAQYIRNMILAAHSIHDHIVHFYQLSAMD 117
Score = 97.3 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 27/223 (12%), Positives = 54/223 (24%), Gaps = 55/223 (24%)
Query: 225 SGAAWDLRKSQPYECYSELDFDIPIGKHGD---CYDRYLVRMMEMRESVKIIRQCVNRLL 281
SG +P E ++ L G D + + ++ E + + L
Sbjct: 332 SGKHAWYEDDEPLEPWAGLTRPKYTGWQDDGKYSWVKAPTFYGKVVEVGPLA-YLICGLA 390
Query: 282 GKNKVGPVSASDPKIVPPKR----------------------------ADMKRSMESLIH 313
+ ++ K + K + + LI
Sbjct: 391 ANDTPTVNHFNELKGIYEKLTGNTLTTDQLHSTLGRIIGRTVHCCALNDILSAQWQMLID 450
Query: 314 HFKL-----YTEGYHVPVGE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH-- 364
+ Y + GE E P+G +++ + + P +
Sbjct: 451 NIAKGDMTAYIKTDIPASGEFRGVGFGEVPRGMLSHWVVIK-DGRIENYQAVVPSTWNAG 509
Query: 365 -------LQAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
+ E G +AD V + S D
Sbjct: 510 PRNEQDQMGPYELSIIGTPVADPTKPLEVVRTIHSFDPCMSCA 552
>gi|110806897|ref|YP_690417.1| hydrogenase 2 large subunit [Shigella flexneri 5 str. 8401]
gi|110616445|gb|ABF05112.1| probable large subunit, hydrogenase-2 [Shigella flexneri 5 str.
8401]
Length = 567
Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ +V + G + RG E++++ + A R+ V +
Sbjct: 13 IEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALS 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A E L I++P+ Q IR + H+++ +
Sbjct: 72 SVRAAESALNIDVPVNAQYIRNIILVAHTTHDHIVHFYQLSA 113
Score = 97.7 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 19/91 (20%)
Query: 322 YHVPV-GE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAME 369
++P GE +EAP+G +++ + P + + E
Sbjct: 461 PNIPATGEFKGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYE 519
Query: 370 FLCKGHQLAD------VSAILGSLDIVFGEV 394
G +AD V + S D
Sbjct: 520 QSLVGTPVADPNKPLEVVRTIHSFDPCMACA 550
>gi|163782640|ref|ZP_02177637.1| hydrogenase large subunit [Hydrogenivirga sp. 128-5-R1-1]
gi|159882213|gb|EDP75720.1| hydrogenase large subunit [Hydrogenivirga sp. 128-5-R1-1]
Length = 633
Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats.
Identities = 41/368 (11%), Positives = 91/368 (24%), Gaps = 49/368 (13%)
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP- 129
+ ++ E A + + + + ++ LL + + G
Sbjct: 246 MCSISME--DMNAPINAEKLAVVEDAIYTQAEAVNLFYLID-LLAIGHIYVQKGWTYGGG 302
Query: 130 ---LWGFEEREKLMVFYERASGSRMHA-AYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
E YE G H + GV +D L +
Sbjct: 303 LAKRRVLGYGEFPDEPYEDIKGGDYHNKILYHSNGVVEDFAKGLDKTKYYPLVGKDFTDP 362
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
D+ + +K + + G E ++G L + Y +
Sbjct: 363 DVIQEFVNHSWYKYPDESKGLHPWEGITEPNYTGPKEGTKTHWKYLDEQGKYSWLKSPRW 422
Query: 246 DIPIGKHGDCYDRYLVRMM---------EMRESVKIIRQCVNRLLGKNKVGPVSASDPKI 296
+ G + M E + V+++LG + + +
Sbjct: 423 KGKPCEVGPLARYIITYTAVKQGHVKPSWMDEMIVKQIDTVSKVLGLPPHVWLPTTVGRT 482
Query: 297 VPPKRA----------------DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEF 340
D ++ ++ + + + + + EAP+G
Sbjct: 483 AARGLEAQVGVAANLYFLKKLYDNIKAGDTTVANMEKWEPEKWPKEAKGVGITEAPRGAL 542
Query: 341 GVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGH--QLADVSA----ILG 385
G +++ K + P + A E K ++ D +
Sbjct: 543 GHWVVIK-DGKIENYQCVVPTTWNGSPRDGMGQQGAFEECMKDTVVKVPDKPVEVLKGIH 601
Query: 386 SLDIVFGE 393
S D
Sbjct: 602 SFDPCLAC 609
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 3/104 (2%)
Query: 20 AHGVLRLILELDG--EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQE 77
G LRL L +D V+ G + RG E +++ + A + R+ V
Sbjct: 12 IEGHLRLELVVDEKTGKVKDA-VSAGTMWRGIELILKGRDPRDAWAFTQRICGVCTSIHA 70
Query: 78 HAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+A VE LGI+IP IR + ++ H ++
Sbjct: 71 YASVRCVEDALGIKIPKNANYIRNIMYGTLQVHDHTVHFYHLHA 114
>gi|146421|gb|AAA23998.1| hydrogenase-1 large subunit (hyaB) [Escherichia coli]
Length = 597
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 42/104 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + ++ + V G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNINDQNVITNAVSCGTIFRGLEIILQGRDPRDARAFVERICGVCTGVHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
A+E +GI++P +IR + HL++ A
Sbjct: 87 SVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130
Score = 90.8 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 13/93 (13%), Positives = 24/93 (25%), Gaps = 16/93 (17%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQ 366
+ + EAP+G G + K + P + +
Sbjct: 488 EKWEPATWPTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVPTTWNASPRDPKGQIG 546
Query: 367 AMEFLCKGHQLA------DVSAILGSLDIVFGE 393
A E ++A ++ L S D
Sbjct: 547 AYEAALMNTKMAIPEQPLEILRTLHSFDPCLAC 579
>gi|289549184|ref|YP_003474172.1| nickel-dependent hydrogenase large subunit [Thermocrinis albus DSM
14484]
gi|289182801|gb|ADC90045.1| nickel-dependent hydrogenase large subunit [Thermocrinis albus DSM
14484]
Length = 559
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 41/381 (10%), Positives = 90/381 (23%), Gaps = 97/381 (25%)
Query: 110 LSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL 169
H +++ + L + K++ + G H + G P
Sbjct: 171 WDHPQYKLPPEVNLLLIAHYLDALNWQTKIVQVHTIFGGKNPHPNFVVGGMPSPINPDSD 230
Query: 170 VEDIGCWCDSFPSALNDIS---------DLLTGNRIFKQRNVN---------IGTVKLED 211
+ S + ++ DLL + ++ +G +
Sbjct: 231 SAINMEKLNRVASLVKEMQSFVEEVYLPDLLLLAKYYRDWFFIGEGLGNFLVMGEPMWDI 290
Query: 212 AWGWGFSGVMIRGSG-------------------AAW------DLRKSQPYECYSELDFD 246
+ G +W D P+E + L +
Sbjct: 291 HRDNVWFIPPGFVRGRNLKDVEDVDIMEIKESIAHSWYTYTSGDNSSLHPWEGETNLKYT 350
Query: 247 IPIGKH-------GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVG-PVSASDPKIVP 298
P + + + E + R + +G V K+
Sbjct: 351 GPKPPYDLLNVDGKYSWLKAPRYKGYSVEVGPLARVLILMARDMYGIGERVKEILGKLDL 410
Query: 299 PKRA--------------------DMKRSMESLIHHFKL----------YTEGYHVPVGE 328
P++A M+ ++ L+ + K + +
Sbjct: 411 PEKAMFSTMGRTLARGIETELYASSMETWLKQLVDNIKRGDTKVFEEGRWDPSTWPKEAK 470
Query: 329 VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLAD 379
+EAP+G ++ K + P + A E GH + +
Sbjct: 471 GVGIMEAPRGSLSHWIHIKE-GKIANYQAVVPTTWNGSPRDEKGQPSAYEAAIVGHTVHN 529
Query: 380 ------VSAILGSLDIVFGEV 394
+ + S D
Sbjct: 530 PEEPLEILRTIHSFDPCLACA 550
Score = 99.2 bits (246), Expect = 1e-18, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 1/101 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E+ +V++ G + RG E ++ + +A R+ V A
Sbjct: 12 IEGHLRIEAEIKDGVVQKA-YSSGTMVRGIEIILRGRDPREAWALAQRICGVCTTVHAIA 70
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE L +IP LIR L + H+++
Sbjct: 71 SVRAVEDALQWKIPQNASLIRKLMIGTLFVHDHVVHFYHLH 111
>gi|148259356|ref|YP_001233483.1| nickel-dependent hydrogenase, large subunit [Acidiphilium cryptum
JF-5]
gi|326402516|ref|YP_004282597.1| Ni/Fe-hydrogenase large subunit [Acidiphilium multivorum AIU301]
gi|146401037|gb|ABQ29564.1| nickel-dependent hydrogenase, large subunit [Acidiphilium cryptum
JF-5]
gi|325049377|dbj|BAJ79715.1| Ni/Fe-hydrogenase large subunit [Acidiphilium multivorum AIU301]
Length = 598
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 39/102 (38%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + LD V R G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNLDENNVIRNAVSSGTMWRGLEVILKGRDPRDAWAFCERICGVCTGVHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
VE LGI IP IR L + HL++
Sbjct: 87 SVRTVEDALGIRIPANANTIRNLITASLWAQDHLVHFYHLHA 128
Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats.
Identities = 36/384 (9%), Positives = 74/384 (19%), Gaps = 112/384 (29%)
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE------------ 168
++ A++ L + + +++ + G H + G
Sbjct: 198 ANLMAVSHYLEALDFQREIVKIHTVFGGKNPHPNWLVGGMACAINLDGPLAAGAPVNMVQ 257
Query: 169 ------LVEDIGCWCDS-----------FPSALNDISDLLTGNRIFKQRNVNIGTVKLED 211
+++ + D F L N + +
Sbjct: 258 LNLVSSIIDQTIAFIDQVYIPDLKAIASFYKTWQYGRGLAGRNVMSYGEFPFEANAWTDR 317
Query: 212 AWGW----------------GFSGVMIRGSGAAWDLRKS-------QPYECYSELDFD-- 246
K P+ ++ DF
Sbjct: 318 NLMIPRGAIVNGNLAEIHEVDARDPGQIQEFVDHSWYKYPNESVGLHPWSGITDPDFRLG 377
Query: 247 -----------IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPK 295
+ + E + R + G + K
Sbjct: 378 AKTVGTRTDIRQLDESEKYSFIKAPRWRGHAMEVGPLSRFTIGYARGMAEFKEPVDRLLK 437
Query: 296 ---------------------IVPPKRADMKRSMESLIHHFK----------LYTEGYHV 324
M+R + L+ + K +
Sbjct: 438 DLGLPFEALFTTLGRTAARGLEASWAAHAMRRLHDQLMDNLKAGDLATASTAKWEPASWP 497
Query: 325 PVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA---------HLQAMEFLCKGH 375
+ VEAP+G G ++ K + P ++ A E
Sbjct: 498 AEAKGVGLVEAPRGALGHWIHIR-NGKIEAYQAVVPTTWNGSPRDPAGNIGAFEAALLNT 556
Query: 376 QLADVS------AILGSLDIVFGE 393
LA+ L S D
Sbjct: 557 PLANAEQPLEILRTLHSFDPCLAC 580
>gi|326385697|ref|ZP_08207327.1| hydrogenase protein large subunit [Novosphingobium nitrogenifigens
DSM 19370]
gi|326209855|gb|EGD60642.1| hydrogenase protein large subunit [Novosphingobium nitrogenifigens
DSM 19370]
Length = 599
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 39/102 (38%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D V R G + RG E +++ + A + R+ V
Sbjct: 27 IEGHMRCEVNIDSSNVIRNAVSTGTMWRGLEVILKGRDPRDAWAFVQRICGVCTGTHALT 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE L I+IP IR + ++ HL++
Sbjct: 87 SVRAVENALKIDIPENANSIRNIMQLSLQVHDHLVHFYHLHA 128
Score = 99.2 bits (246), Expect = 1e-18, Method: Composition-based stats.
Identities = 37/385 (9%), Positives = 82/385 (21%), Gaps = 114/385 (29%)
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVED-------- 172
D+ A+T L + ++++M G +H + G +
Sbjct: 199 ADLMAVTHYLEALDFQKEIMRVRTIFGGKDIHPNWLVGGVPCAINIDGDMAAGAPINMAS 258
Query: 173 ------IGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKL----------------- 209
I C F + I D++ +K G
Sbjct: 259 LDYVISITQRCIEFVENV-YIPDVIAIGGFYKSWLYGGGLSSKSLLAYGDIPDKANDYSP 317
Query: 210 ---------------EDAWGWGFSGVMIRGSGAAWDLRKS-------QPYECYSELDFD- 246
++ + K P++ +E ++
Sbjct: 318 ANLLMPHGAIINGKLDEIHPVDLTDPSQVQEFVPHSWYKYEDESKGLHPWDGVTEPHYEL 377
Query: 247 ------------IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDP 294
+ + E + R + G+ +
Sbjct: 378 GKNAKGTSTRIEELDEAAKYSWIKAPRWRGHAMEVGPLARYIIGYQQGRQDIKEQVDGLL 437
Query: 295 KIVPPKRADM---------------------KRSMESLIHHFK----------LYTEGYH 323
K + M K ++ LI + K +
Sbjct: 438 KALDVPMEAMFSTLGRTAARALEAQWAANKQKYFLDKLIANIKAGDTATANTAKFDPSTW 497
Query: 324 VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA---------HLQAMEFLCKG 374
+ EAP+G ++ + + P ++ A E
Sbjct: 498 PSEVKGVGFSEAPRGALAHWIRIK-DGRIDNYQCVVPSTWNGSPRDNQGNIGAFEASLLN 556
Query: 375 HQLA------DVSAILGSLDIVFGE 393
++ ++ L S D
Sbjct: 557 TKVERAEEPVEILRTLHSFDPCLAC 581
>gi|298345907|ref|YP_003718594.1| hydrogenase [Mobiluncus curtisii ATCC 43063]
gi|304390389|ref|ZP_07372342.1| hydrogenase-2 large chain [Mobiluncus curtisii subsp. curtisii ATCC
35241]
gi|315657597|ref|ZP_07910479.1| hydrogenase-2 large chain [Mobiluncus curtisii subsp. holmesii ATCC
35242]
gi|298235968|gb|ADI67100.1| hydrogenase (acceptor) [Mobiluncus curtisii ATCC 43063]
gi|304326145|gb|EFL93390.1| hydrogenase-2 large chain [Mobiluncus curtisii subsp. curtisii ATCC
35241]
gi|315492069|gb|EFU81678.1| hydrogenase-2 large chain [Mobiluncus curtisii subsp. holmesii ATCC
35242]
Length = 580
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 34/212 (16%), Positives = 67/212 (31%), Gaps = 18/212 (8%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E +G+ +++ + RG E +++ + + R+ V A
Sbjct: 13 IEGHLRIEMETEGKQIKKA-WSVSTQFRGIETIVQNRDPRDVWAFVQRICGVCTSVHAIA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKL 139
AVE +G P +LIR L I H+++ + + + +K
Sbjct: 72 SISAVEDAIGSNPPENARLIRSLVLGSQEIQDHVIHFYHLHA-LDFVNVVNAAKADPQKT 130
Query: 140 MVFYERASGSRMHAAYFRPGGVHQDIPPELVE---------------DIGCWCDSFPSAL 184
+ F R V +D +++E D ++ +
Sbjct: 131 LEFAHSIGSKWRGNNLKRFTEV-RDTVKQILESGQLSIFTGGYWDHPDYRLPPEADLMCV 189
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWG 216
D L R + G + G
Sbjct: 190 AHYLDALEFQRSMIRICTVFGGKNPHPNFLVG 221
Score = 88.5 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 41/394 (10%), Positives = 80/394 (20%), Gaps = 114/394 (28%)
Query: 110 LSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL 169
H D+ + L E + ++ G H + G P
Sbjct: 173 WDHPDYRLPPEADLMCVAHYLDALEFQRSMIRICTVFGGKNPHPNFLVGGMACSIDPNSS 232
Query: 170 VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRG----- 224
D + +++I + + N + + I V + G +
Sbjct: 233 ESINQVQMDQIKTWIDEIIEFV--NDCYYPDVLAIAGVYKDYF-DIGATHPNYLAVGLAG 289
Query: 225 ---SGAAWDLR-------------------KSQPYECYS--------------------- 241
SG R K P++ +
Sbjct: 290 SIFSGDPNKSRISSAHTAIKPGVILGGDITKVHPFDPHKIEEYISSAWYEYSVGDDKPLT 349
Query: 242 -------------ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGP 288
+ F+ + + + + I R + G V
Sbjct: 350 PDKGETTVKYTGPQPPFEWLGDNDKYTWSKAPRYDGKPMQVGPIARMILAYAQGYEPVKQ 409
Query: 289 VSASDP---------------KIVPPKRAD------MKRSMESLIHHFK----------L 317
+ + M L+ + K
Sbjct: 410 ILDQAMATLGITPAQLNSTMGRTFARAAEATVSAQLMLDDYNQLVDNIKGGQIDVFDASK 469
Query: 318 YTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAM 368
+ + Y VE +G + +S +K R + P
Sbjct: 470 WEPSSWPAECQGYGFVEVSRGNLSHW-VSIKNSKVERYQAVVPTTWLAGGRDANGVTGPY 528
Query: 369 EFLCKG---HQLAD------VSAILGSLDIVFGE 393
E G H L + + S D
Sbjct: 529 EESLMGTGTHPLLNPKEPLEPMRTIHSYDPCMSC 562
>gi|219669387|ref|YP_002459822.1| nickel-dependent hydrogenase large subunit [Desulfitobacterium
hafniense DCB-2]
gi|219539647|gb|ACL21386.1| nickel-dependent hydrogenase large subunit [Desulfitobacterium
hafniense DCB-2]
Length = 570
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 1/104 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ ++G + G + RG EK++E + + R+ V
Sbjct: 13 VEGHLRIEAVVEGTQITEA-LSSGTIFRGIEKIVENRDPRDVWSFVQRICGVCTHIHALT 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
AVE L IP +IR + + + H+++
Sbjct: 72 SIRAVEDALDYRIPKNANIIRNIMTLTQMVHDHVVHFYHLHGFD 115
Score = 98.5 bits (244), Expect = 2e-18, Method: Composition-based stats.
Identities = 34/393 (8%), Positives = 78/393 (19%), Gaps = 99/393 (25%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H ++ A+ + +++++ + G H Y G
Sbjct: 162 GQLGIFANAYWGHPAYRLPPEANLLAVAHYIEALNWQKEIVKIHTIFGGKNPHPNYCVGG 221
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALND---------ISDLLTGNRIFKQRNVNIGTVK-- 208
++ + S +++ + DL +K G
Sbjct: 222 HPSTINMNDVHVINMERLNLVKSKIDEAQTFVDKVLLPDLFAIAGFYKGDLWGGGIGNFL 281
Query: 209 ----------LEDAWGWGFSGVMIRGS-------------------------------GA 227
E +G ++ G
Sbjct: 282 CYGGVPMTDIREPDSFLFPNGAVLNRDLSKVYDVDLKDPEHIKEFVSHSWYQYDDPQAGL 341
Query: 228 AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVG 287
K+ P + + + E + R V G +
Sbjct: 342 HPWQGKTAPAYDGPRPPYHNLDENKKYSWIKTPHWQGHPMEVGPLARFVVGYARGNKPIK 401
Query: 288 PVSASD------------------------PKIVPPKRADMKRSMESLI-------HHFK 316
+ K+ A + + I + +
Sbjct: 402 GLVDDALQRLDLPITALFSTLGRTLARALEAKLSVDHLAGFYADLLANIKAGDSQTFNPE 461
Query: 317 LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QA 367
+ + EAP+G ++ K + P +
Sbjct: 462 KWEPSRWPAAAQGVGFAEAPRGALAHWVKIR-DGKVESYQAVVPTTWNAAPRDEKGVKGP 520
Query: 368 MEFLCKGHQLA------DVSAILGSLDIVFGEV 394
E +A ++ + S D
Sbjct: 521 YEASLLDTPVAVPDQPLELLRTIHSFDPCLACA 553
>gi|114763663|ref|ZP_01443057.1| hydrogenase protein large subunit [Pelagibaca bermudensis HTCC2601]
gi|114543664|gb|EAU46677.1| hydrogenase protein large subunit [Roseovarius sp. HTCC2601]
Length = 597
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 26/234 (11%), Positives = 54/234 (23%), Gaps = 48/234 (20%)
Query: 207 VKLEDAWGWGFSGVMIR-GSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMME 265
+ +G +G + G + P + D + +
Sbjct: 347 FVDHSWYTYGEAGKGLHPWDGVTEPKYELGPNAKGTRTDIKELDEAAKYSWIKAPRWRGH 406
Query: 266 MRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM--------KRSMES-----LI 312
E + R V G + + + R++ES L
Sbjct: 407 AMEVGPLARYIVGYAKGHEDIRDQVDRLLSDMDLPMEALFSTLGRTAARALESEYCGRLQ 466
Query: 313 HHF------------------KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYR 354
HF + + + EAP+G G ++ +
Sbjct: 467 RHFFDKMMTNIRNGDESTANVEKWDPSTWPSEAKGVGMTEAPRGALGHWIKIK-DGRIEN 525
Query: 355 CKIRAPGYA---------HLQAMEFLCKGHQLA------DVSAILGSLDIVFGE 393
+ P ++ A E ++ ++ L S D
Sbjct: 526 YQCVVPTTWNGSPRDTAGNIGAFEASLMNTKVERPEEPVEILRTLHSFDPCLAC 579
Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 20/102 (19%), Positives = 38/102 (37%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + ++ + + G + RG E +++ + A + +R+ V
Sbjct: 26 IEGHMRCEVNVNDDNIITNAVSTGTMWRGLEVILKGRDPRDAWAFTERICGVCTGTHALT 85
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE L I IP IR + I H+++
Sbjct: 86 SVRAVEDALSISIPDNANSIRNMMQLALEIHDHVVHFYHLHA 127
>gi|89894985|ref|YP_518472.1| Hup-type Ni,Fe-hydrogenase large subunit [Desulfitobacterium
hafniense Y51]
gi|89334433|dbj|BAE84028.1| Hup-type Ni,Fe-hydrogenase large subunit [Desulfitobacterium
hafniense Y51]
Length = 573
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 1/104 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ ++G + G + RG EK++E + + R+ V
Sbjct: 16 VEGHLRIEAVVEGTQITEA-LSSGTIFRGIEKIVENRDPRDVWSFVQRICGVCTHIHALT 74
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
AVE L IP +IR + + + H+++
Sbjct: 75 SIRAVEDALDYRIPKNANIIRNIMTLTQMVHDHVVHFYHLHGFD 118
Score = 98.5 bits (244), Expect = 2e-18, Method: Composition-based stats.
Identities = 34/393 (8%), Positives = 78/393 (19%), Gaps = 99/393 (25%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H ++ A+ + +++++ + G H Y G
Sbjct: 165 GQLGIFANAYWGHPAYRLPPEANLLAVAHYIEALNWQKEIVKIHTIFGGKNPHPNYCVGG 224
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALND---------ISDLLTGNRIFKQRNVNIGTVK-- 208
++ + S +++ + DL +K G
Sbjct: 225 HPSTINMNDVHVINMERLNLVKSKIDEAQTFVDKVLLPDLFAIAGFYKGDLWGGGIGNFL 284
Query: 209 ----------LEDAWGWGFSGVMIRGS-------------------------------GA 227
E +G ++ G
Sbjct: 285 CYGGVPMTDIREPDSFLFPNGAVLNRDLSKVYDVDLKDPEHIKEFVSHSWYQYDDPQAGL 344
Query: 228 AWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVG 287
K+ P + + + E + R V G +
Sbjct: 345 HPWQGKTAPAYDGPRPPYHNLDENKKYSWIKTPHWQGHPMEVGPLARFVVGYARGNKPIK 404
Query: 288 PVSASD------------------------PKIVPPKRADMKRSMESLI-------HHFK 316
+ K+ A + + I + +
Sbjct: 405 GLVDDALQRLDLPITALFSTLGRTLARALEAKLSVDHLAGFYADLLANIKAGDSQTFNPE 464
Query: 317 LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QA 367
+ + EAP+G ++ K + P +
Sbjct: 465 KWEPSRWPAAAQGVGFAEAPRGALAHWVKIR-DGKVESYQAVVPTTWNAAPRDEKGVKGP 523
Query: 368 MEFLCKGHQLA------DVSAILGSLDIVFGEV 394
E +A ++ + S D
Sbjct: 524 YEASLLDTPVAVPDQPLELLRTIHSFDPCLACA 556
>gi|260576159|ref|ZP_05844152.1| nickel-dependent hydrogenase large subunit [Rhodobacter sp. SW2]
gi|259021639|gb|EEW24942.1| nickel-dependent hydrogenase large subunit [Rhodobacter sp. SW2]
Length = 596
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 42/102 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D + + R G + RG E +++ + A + +R+ V
Sbjct: 25 IEGHMRCEVNVDEQGIIRNAVSTGTMWRGLEVILKGRDPRDAWAFTERICGVCTGTHALT 84
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI+IP IR + ++ H+++
Sbjct: 85 SVRAVEDALGIKIPDNANSIRNIMQLNLQVHDHIVHFYHLHA 126
Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats.
Identities = 28/234 (11%), Positives = 53/234 (22%), Gaps = 48/234 (20%)
Query: 207 VKLEDAWGWGFSGVMIR-GSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMME 265
+ +G G + G + P ++ + + +
Sbjct: 346 FVDHSWYSYGEPGKGLHPWDGVTEPKFELGPNLKGTKTNIQEIDEAAKYSWIKAPRWKGH 405
Query: 266 MRESVKIIRQCV-------------NRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLI 312
E + R V LLG K+ + RA L
Sbjct: 406 AMEVGPLARYIVGYAGGHEDIKNQVEGLLGTMKLPVTALFSTLGRTAARALEGEYCGRLQ 465
Query: 313 HHF------------------KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYR 354
HF + + + EAP+G G ++ +
Sbjct: 466 KHFFDKLMTNIKNGDQSTANVEKWDPSTWPKEAKGVGMTEAPRGALGHWVKIK-DGRIEN 524
Query: 355 CKIRAPGYA---------HLQAMEFLCKGHQL--AD----VSAILGSLDIVFGE 393
+ P ++ A E ++ D + L S D
Sbjct: 525 YQCVVPTTWNGSPRDAAGNIGAFEAALMDTKMERPDEPVEILRTLHSFDPCLAC 578
>gi|154149543|ref|YP_001406426.1| quinone-reactive Ni/Fe-hydrogenase large chain [Campylobacter
hominis ATCC BAA-381]
gi|153805552|gb|ABS52559.1| quinone-reactive Ni/Fe-hydrogenase large chain [Campylobacter
hominis ATCC BAA-381]
Length = 573
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 24/124 (19%), Positives = 42/124 (33%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LRL + +D V L RG E +++ + + R+ V + A
Sbjct: 13 IEGHLRLEVIVDDNNVVTDAYASSTLWRGIETIVKGRDPRDVPFFVQRICGVCTSSHYRA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKL 139
+A+E LGI P+ L R L + + H ++ + R
Sbjct: 73 GTIAIEDALGITPPLNAILTRTLMNAALFLHDHPVHFYQLHALDFVDIVSALSADVRAAE 132
Query: 140 MVFY 143
+
Sbjct: 133 EESF 136
Score = 98.9 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 45/417 (10%), Positives = 87/417 (20%), Gaps = 103/417 (24%)
Query: 77 EHAYALAVEKLLGIEIPIRG-QLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEE 135
E YA + L ++ + L H T ++ AL+ L
Sbjct: 140 ETPYACGADHLKAVKDKVTAFVNKGALGPFANAYYGHPTYHFTPEQNLIALSHYLECLRV 199
Query: 136 REKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN-----DISDL 190
+ G + H GGV + +G + F + D+
Sbjct: 200 QRTAAQLMAIFGGKQPHPQSLVVGGVTCVMDILNPSRLGEYVSKFKEVADFVNRAYYPDI 259
Query: 191 LTGNRIFKQRN-----VNIGTVKLEDAWGWGFSGVMIRGSGA------------------ 227
+ + + + + + + S + SG
Sbjct: 260 IMAGKAYATEPSVLNDLGVANLWTHKEMQYS-SNEFLFDSGVILNGDISKVEDLDESQIT 318
Query: 228 ---AWDLRKSQ-PYECYSELDFDIPIGKH---------------------GDCYDRYLVR 262
K+ P Y G + +
Sbjct: 319 EEATHSWYKNDKPLHPYEGEQEPNYTGFKDEQTLNAKGEMENSKVLDTKGKYSWIKAPRY 378
Query: 263 MMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR---------------- 306
+ + VN G V PV K +
Sbjct: 379 KGMPLQVGPLANVVVNYAKGNKFVVPVVEKVLKDTGLPLTAVLSTLGRTACRMIEAKVIA 438
Query: 307 -----SMESLIHHFKLYTEGYHVP---------VGEVYAAVEAPKGEFGVYLISDGGNKP 352
++ +L+ + K G V P+G ++
Sbjct: 439 DNALMALNNLVANIKSGDTETCAKYTIDKNKEYKGRYMGHV--PRGALSHWIRIK-NGIV 495
Query: 353 YRCKIRAPGYAHLQA---------MEFLCKGHQLAD------VSAILGSLDIVFGEV 394
+ P + E G ++AD + + S D
Sbjct: 496 ENYQCVVPSTWNASPKDNKGQMGSYEACIIGLKIADLKQPLEIIRKIHSYDPCIACA 552
>gi|123746|sp|P15284|MBHL_RHOCA RecName: Full=Uptake hydrogenase large subunit; AltName:
Full=Hydrogenlyase; AltName: Full=Membrane-bound
hydrogenase large subunit
gi|46036|emb|CAA31870.1| unnamed protein product [Rhodobacter capsulatus]
Length = 597
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 40/102 (39%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + ++ + + G + RG E +++ + A + +R+ V
Sbjct: 26 IEGHMRCEVNVNDQGIITNAVSTGTMWRGLEVILKGRDPRDAWAFTERICGVCTGTHALT 85
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI IP IR + +I H+++
Sbjct: 86 SVRAVESALGITIPDNANSIRNMMQLNLQIHDHIVHFYHLHA 127
Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 35/132 (26%), Gaps = 16/132 (12%)
Query: 277 VNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAP 336
+ R + K K ++ +S + + + + EAP
Sbjct: 449 LGRTAARALEAEYCCRLQKHFFDKLVTNIKNGDSSTANVEKWDPSTWPKEAKGVGMTEAP 508
Query: 337 KGEFGVYLISDGGNKPYRCKIRAPGYA---------HLQAMEFLCKGHQLA------DVS 381
+G G ++ + + P ++ A E ++ ++
Sbjct: 509 RGALGHWVKIK-DGRIENYQCVVPTTWNGSPRDSKGNIGAFEASLLNTKMERPEEPVEIL 567
Query: 382 AILGSLDIVFGE 393
L S D
Sbjct: 568 RTLHSFDPCLAC 579
Score = 36.1 bits (82), Expect = 9.3, Method: Composition-based stats.
Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 3/101 (2%)
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
D+ A T L + +++++ + G H + G + +
Sbjct: 198 ADLMATTHYLEALDLQKEVVKVHTIFGGKNPHPNWLVGGVPCPINVDGVGAVGAINMERL 257
Query: 181 P--SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
S++ D T N IG E +G G SG
Sbjct: 258 NLVSSIIDRCTEFTRNVYLPD-LKAIGGFYKEWLYGGGLSG 297
>gi|288817416|ref|YP_003431763.1| Ni,Fe-hydrogenase large subunit [Hydrogenobacter thermophilus TK-6]
gi|152061271|dbj|BAF73689.1| Ni,Fe-hydrogenase large subunit [Hydrogenobacter thermophilus]
gi|288786815|dbj|BAI68562.1| Ni,Fe-hydrogenase large subunit [Hydrogenobacter thermophilus TK-6]
gi|308751023|gb|ADO44506.1| Cytochrome-c3 hydrogenase [Hydrogenobacter thermophilus TK-6]
Length = 565
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ EL+G V+ G + RG E +++ + +A + R+ V A
Sbjct: 12 IEGHLRIEAELEGNRVKSA-YSSGTMVRGIEIILKGRDPREAWAFAQRICGVCTTVHAFA 70
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE L I++P LIR L + H+++
Sbjct: 71 SIRAVEDALKIKVPRNASLIRKLMIGTLFVHDHVVHFYHLHA 112
Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 38/381 (9%), Positives = 84/381 (22%), Gaps = 97/381 (25%)
Query: 110 LSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL 169
H ++ A+ L + K++ + G H + G
Sbjct: 171 WDHPDYRLPPEANLMAVAHYLDALNWQTKIVQVHTIFGGKNPHPNFVVGGMACPIDLQSD 230
Query: 170 VEDIGCWCDSFPSALNDIS---------DLLTGNRIFKQRNVN---------IGTVKLED 211
S ++ + DL+ +K +G + +
Sbjct: 231 TAINMDKLGRIKSLIDSMIEFVEKVYLPDLIAIASFYKDWFEKGEGVKNFLVLGEPEGDS 290
Query: 212 AWGWGFSGV--------MIRGSGAAW-----------------DLRKSQPYECYSELDFD 246
F + + D R P+E + L +
Sbjct: 291 HREGKFFIPPTFIRDRNLENYEDVDYSKIEEYVTHSYYKYSVGDERGLHPFEGETVLHYT 350
Query: 247 IPIGKH-------GDCYDRYLVRMMEMRESVKIIRQC----------------------- 276
P + + + E + R
Sbjct: 351 GPEPPYQQLNVEGKYSWLKAPRYRGLPAEVGPLARILALYARDEHGARELVNSYLSKLGL 410
Query: 277 --------VNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGE 328
+ R L + + A + + +S +S + + + +
Sbjct: 411 PVNALYSTMGRTLARGIETYIYAHAIRSYYDQLVQNVKSGDSTTFNGEKWEPSTWEKDAK 470
Query: 329 VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQL-- 377
+EAP+G ++ K + P + E GH+L
Sbjct: 471 GLGLMEAPRGSLSHWVHIK-DGKIANYQAVVPTTWNGSPRDAKGQPSPYEASLVGHELVN 529
Query: 378 ----ADVSAILGSLDIVFGEV 394
++ + S D
Sbjct: 530 PKEPLEIIRTIHSFDPCLACA 550
>gi|134291343|ref|YP_001115112.1| nickel-dependent hydrogenase, large subunit [Burkholderia
vietnamiensis G4]
gi|134134532|gb|ABO58857.1| nickel-dependent hydrogenase, large subunit [Burkholderia
vietnamiensis G4]
Length = 618
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 43/102 (42%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R+ + +D V R G + RG E +++ + A + +R+ V A
Sbjct: 26 IEGHMRVEVNVDSNNVIRNAVSTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGCHALA 85
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE L I IP LIR + ++ ++ H ++
Sbjct: 86 SVRAVEDALDIRIPPNAHLIREIMAKTLQVHDHAVHFYHLHA 127
Score = 94.6 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 23/217 (10%), Positives = 55/217 (25%), Gaps = 16/217 (7%)
Query: 192 TGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGK 251
T + G + R ++ P+ + D +
Sbjct: 385 TAIESVDESAKYSWVKAPRWRGHAMEVGPLARYILGYAHAKQGNPHGARIKEQIDAALQS 444
Query: 252 HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESL 311
+ L + +++ + R L + A + D R+ ++
Sbjct: 445 VNQDMPKLLGLPETTLGAKQLLPTTIGRTLARALEAQYCAEMMSDDWQRLVDNIRNGDTS 504
Query: 312 IHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH------- 364
+ + + + V AP+G G ++ + + P +
Sbjct: 505 TANVEKWDPSTWPAEAKGVGTVAAPRGALGHWIKIK-DGRIENYQCVVPSTWNGGPRDAK 563
Query: 365 --LQAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
+ A E +A+ + L S D
Sbjct: 564 GQIGAFEASLMNTPMANPEQPVEILRSLHSFDPCMAC 600
>gi|157737668|ref|YP_001490351.1| Ni/Fe-hydrogenase, large subunit [Arcobacter butzleri RM4018]
gi|157699522|gb|ABV67682.1| Ni/Fe-hydrogenase, large subunit [Arcobacter butzleri RM4018]
Length = 576
Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 42/101 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E+D V + L RG E +++ + A R+ V + A
Sbjct: 14 IEGHLRIEVEVDENNVIQKAYSSSTLWRGLETIVKNRDPRDAGFLMQRICGVCTFSHYRA 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI PI +L R L + + H+++
Sbjct: 74 GIEAVEDALGIVPPINAKLTRSLMNMALFMHDHIVHFYHLH 114
Score = 95.0 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 43/366 (11%), Positives = 85/366 (23%), Gaps = 101/366 (27%)
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
L+ L E + L G + H GGV + +G + F +
Sbjct: 191 LSHYLKALEVQRDLAKLMAIFGGKQPHPQSLTVGGVTCVMDLLDPSRMGEYLTLFKVSAE 250
Query: 186 DIS-----DLLTGNRIFKQ-----RNVNIGTVKLEDAWGWGFSGVMIRGSGAAWD----- 230
I D++ +FK R + + + SG +D
Sbjct: 251 FIENAYQADIIMAASVFKDELSVTRPAGVMNFMAHQEMRLNKT-EFLFDSGIIFDGDLSK 309
Query: 231 --------------------LRKSQPYECYSEL------------------DFDIPIGKH 252
PY+ + + K
Sbjct: 310 VYDINENLITEEATHSWYQNNEALHPYDGKTNPLYTGLRDMDTIGMNNEVVHSKVVDEKG 369
Query: 253 GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASD------------------P 294
+ + + E + ++ G K+ P+
Sbjct: 370 KYTWIKSPRYDGKAMEVGPLACILISYAKGNKKIVPIVDEFLQKTGLPKSALFTTLGRTA 429
Query: 295 KIVPPKRADMKRSMES---LIHHFKLYTEGY--------HVPVGEVYAAVEAPKGEFGVY 343
+ +A K +E+ LI + K+ + G V P+G +
Sbjct: 430 ARMLQVKAVAKHGLEAFNTLIENLKVDETTFTSYNIDKDKEYKGRFIGDV--PRGMLSHW 487
Query: 344 LISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLAD------VSAILGSLD 388
+ + P + + E G ++ D + I+ S D
Sbjct: 488 IRIK-NGVVENYQAVVPSTWNAGPIDATGQMGPYEANLVGLKVQDISQPLEIIRIIHSFD 546
Query: 389 IVFGEV 394
Sbjct: 547 PCIACA 552
>gi|314982619|gb|EFT26711.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL110PA3]
gi|315091143|gb|EFT63119.1| respiratory-chain NADH dehydrogenase, subunit [Propionibacterium
acnes HL110PA4]
Length = 196
Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats.
Identities = 50/224 (22%), Positives = 81/224 (36%), Gaps = 30/224 (13%)
Query: 173 IGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLR 232
+ + N + L + + +G SG + R SG D R
Sbjct: 1 MQPTLGEWLDDANALVTWLRTALDATVGVRGVAVIPTNMIDRYGLSGPVSRASGVDLDTR 60
Query: 233 KSQPYECYSELDFDIPI-GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSA 291
+ Y EL + + GD Y R + S + RQ ++RL + GP+
Sbjct: 61 RRT--AVYDELKWPEVVIEPRGDAYSRLATLCNDAAVSSSLCRQILDRLPNLD--GPLET 116
Query: 292 SDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNK 351
P + P G + +EAP G G L S G
Sbjct: 117 RLPTTI-------------------------KAPRGRTWTTIEAPWGRAGYLLESRGSTT 151
Query: 352 PYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
P+R +R P +A++Q +E + G ++ DV A + SL G++D
Sbjct: 152 PWRMALRTPTFANVQVLEAVLPGTRVDDVEATIASLGWTLGDLD 195
>gi|323261280|gb|EGA44868.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
Length = 451
Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 38/102 (37%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D V G + RG E +++ + A + +R+ V
Sbjct: 27 IEGHMRCEVNIDSNNVITNAVSTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGTHALT 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI IP IR + + HL++
Sbjct: 87 SIRAVENALGIAIPDNANCIRNMMQATLHVHDHLVHFYHLHA 128
>gi|157737675|ref|YP_001490358.1| Ni/Fe-hydrogenase, large subunit [Arcobacter butzleri RM4018]
gi|157699529|gb|ABV67689.1| Ni/Fe-hydrogenase, large subunit [Arcobacter butzleri RM4018]
Length = 580
Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats.
Identities = 42/362 (11%), Positives = 78/362 (21%), Gaps = 94/362 (25%)
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
L+ L E + L G H F GGV + I +
Sbjct: 195 LSHYLDALELQRDLAKMMAIFGGKNPHPQSFVVGGVTCVQDIKNPARIAEFKQILKKGRK 254
Query: 186 DISDLLTGNRIFKQRNVNIGTV--KLEDAWGWGFSGVMIRGSGAAWDLRKSQP------- 236
+ + + + G ++ K P
Sbjct: 255 FTKEAYLSDVYMAGTMYAGEALEGIGGGIGNYMSYGDFRLDDTPFYESAKLFPSGIVKNK 314
Query: 237 ------------------YECYSE----LDFDIPIGKHG------------------DCY 256
+ Y FD + +
Sbjct: 315 DLSKVFEIDQTKITEDVTHAWYEGNTNLHPFDGVTKPNYTGFGKKENNIAYLDTDKKYSW 374
Query: 257 DRYLVRMMEMRESVKIIRQCVN-------------------RLLGKNKVGPVSASDPKIV 297
+ + E E + R V L + V + + +
Sbjct: 375 IKSPLYDDERMEVGPLARMIVGVASKDERISKYVTTFLKNGNLPVQVLFSTVGRTAARAI 434
Query: 298 PPKRAD--MKRSMESL---IHHFKLYTEG-----YHVPVGEVYAAVEAPKGEFGVYLISD 347
+ M ++ L + H L T + + EAP+G G ++
Sbjct: 435 ETELMADVMMEWVDELASNVAHGDLSTWTEFNFDTVSKDAQGFGMAEAPRGGLGHWVKIK 494
Query: 348 GGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLAD------VSAILGSLDIVFG 392
K + P + L A E G ++A+ + + S D
Sbjct: 495 -DGKVANYQAVVPSTWNAAPRDYKGRLGAYESSLIGTKVANPDQPLEILRTIHSFDPCIA 553
Query: 393 EV 394
Sbjct: 554 CA 555
Score = 98.1 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 20/102 (19%), Positives = 35/102 (34%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +D V + RG E++++ + R+ V
Sbjct: 14 IEGHLRIEAIIDENNVVTDAYSSSTMFRGIEEILKGRDPRDCGLLAMRICGVCTGTHYQR 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE I IP +L+R L + H+++
Sbjct: 74 SIEAVEHAFKITIPKNARLVRNLIQGALYLHDHIVHFYHLHA 115
>gi|152978946|ref|YP_001344575.1| hydrogenase 2 large subunit [Actinobacillus succinogenes 130Z]
gi|150840669|gb|ABR74640.1| nickel-dependent hydrogenase large subunit [Actinobacillus
succinogenes 130Z]
Length = 569
Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 1/104 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ +V G + RG E +++ A R+ V
Sbjct: 15 IEGHLRIGCEIENGVVTNA-WSTGTMWRGMENIVKGADPRDAWMIMQRICGVCTTVHAIV 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
AVE +G ++P+ Q IR + I H+++ +
Sbjct: 74 SVRAVEDAIGAKVPVNAQYIRNMILAAHNIHDHIVHFYQLSAMD 117
Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats.
Identities = 41/378 (10%), Positives = 79/378 (20%), Gaps = 96/378 (25%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE--- 168
H +++ A+ L E + G H GGV I +
Sbjct: 176 HPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAIGGVANPINMDSAA 235
Query: 169 ------------LVEDIGCWCDSFPS-----ALNDISDLLT----------------GNR 195
++ + + + + L+
Sbjct: 236 VLNMERLMYVKACIDRLTDFINQVYKVDTAVIAGYYPEWLSYGKTSRNYLAMPEFPIDAD 295
Query: 196 IFKQRNVNIGTVKLEDAWGWGFSGV-------MIRGSGAAWDLRKSQPYECYSELDFDIP 248
K + + G I+ SG +P E + L
Sbjct: 296 NSKFILNGGYIENGDMSAFRQIDGQKSDFVIKGIKESGKHAWYEDDEPLEPWEGLTRPKY 355
Query: 249 IGKH---GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKN--------------------- 284
G + + ++ E + N
Sbjct: 356 TGWDENGKYSWVKAPSFYDKVVEVGPLAYLLTNLAAKNALTTAHFNQLKGLYDTVTGTNL 415
Query: 285 -------KVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGY----HVPVGE--VYA 331
+G + +++ + + K T Y GE
Sbjct: 416 GVEHLHSTLGRIIGRTVHCAVLNDILVQQWQLLIENIGKGDTVAYLKCAIPESGEFKGVG 475
Query: 332 AVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLAD--- 379
E P+G +++ K + P + L E G +AD
Sbjct: 476 FGEVPRGMLSHWVVIK-DGKIENYQAVVPSTWNSGPRNHNDELGPYEQSLIGTPVADPAK 534
Query: 380 ---VSAILGSLDIVFGEV 394
V + S D
Sbjct: 535 PLEVVRTIHSFDPCMSCA 552
>gi|315637452|ref|ZP_07892663.1| quinone-reactive Ni/Fe-hydrogenase [Arcobacter butzleri JV22]
gi|315478242|gb|EFU68964.1| quinone-reactive Ni/Fe-hydrogenase [Arcobacter butzleri JV22]
Length = 580
Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats.
Identities = 41/362 (11%), Positives = 78/362 (21%), Gaps = 94/362 (25%)
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
L+ L E + L G H F GGV + I +
Sbjct: 195 LSHYLDALELQRDLAKMMAIFGGKNPHPQSFVVGGVTCVQDIKNPARIAEFKQILKKGRK 254
Query: 186 DISDLLTGNRIFKQRNV----------NIGTVKLEDAWG----WGFSGVMIRGSGA---- 227
+ + IG + + + SG
Sbjct: 255 FTKEAYLSDVYMAGTMYAGEALEGIGGGIGNYMSYGDFRLDDTPFYESAKLFPSGIVKNK 314
Query: 228 ------------------AWDLRKSQPYECYSELDFDIPIGK-------------HGDCY 256
+ + + G + +
Sbjct: 315 DLSKVFEIDQTKITEDVTHAWYEGNTNLHPFDGVTKPNYTGFGKKENNIAYLDTDNKYSW 374
Query: 257 DRYLVRMMEMRESVKIIRQCVN-------------------RLLGKNKVGPVSASDPKIV 297
+ + E E + R V L + V + + +
Sbjct: 375 IKSPLYDDERMEVGPLARMIVGVASKDERISKYVTTFLKNGNLPVQVLFSTVGRTAARAI 434
Query: 298 PPKRAD--MKRSMESL---IHHFKLYTEGY-----HVPVGEVYAAVEAPKGEFGVYLISD 347
+ M ++ L + H L T + + EAP+G G ++
Sbjct: 435 ETELMADVMMEWVDELASNVAHGDLSTWTEFNFDNVSKDAQGFGMAEAPRGGLGHWVKIK 494
Query: 348 GGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLAD------VSAILGSLDIVFG 392
K + P + L A E G ++A+ + + S D
Sbjct: 495 -DGKVANYQAVVPSTWNAAPRDYKGRLGAYESSLIGTKVANPDQPLEILRTIHSFDPCIA 553
Query: 393 EV 394
Sbjct: 554 CA 555
Score = 98.1 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 20/102 (19%), Positives = 35/102 (34%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +D V + RG E++++ + R+ V
Sbjct: 14 IEGHLRIEAIIDENNVVTDAYSSSTMFRGIEEILKGRDPRDCGLLAMRICGVCTGTHYQR 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE I IP +L+R L + H+++
Sbjct: 74 SIEAVEHAFKITIPKNARLVRNLIQGALYLHDHIVHFYHLHA 115
>gi|315654495|ref|ZP_07907401.1| hydrogenase-2 large chain [Mobiluncus curtisii ATCC 51333]
gi|315490959|gb|EFU80578.1| hydrogenase-2 large chain [Mobiluncus curtisii ATCC 51333]
Length = 580
Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats.
Identities = 34/212 (16%), Positives = 67/212 (31%), Gaps = 18/212 (8%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E +G+ +++ + RG E +++ + + R+ V A
Sbjct: 13 IEGHLRIEMETEGKQIKKA-WSVSTQFRGIETIVQNRDPRDVWAFVQRICGVCTSVHAIA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKL 139
AVE +G P +LIR L I H+++ + + + +K
Sbjct: 72 SISAVEDAIGSNPPENARLIRSLVLGSQEIQDHVIHFYHLHA-LDFVNVVNAAEADPQKT 130
Query: 140 MVFYERASGSRMHAAYFRPGGVHQDIPPELVE---------------DIGCWCDSFPSAL 184
+ F R V +D +++E D ++ +
Sbjct: 131 LEFAHSIGSKWRGNNLKRFTEV-RDTVKQILESGQLSIFTGGYWDHPDYRLPPEADLMCV 189
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWG 216
D L R + G + G
Sbjct: 190 AHYLDALEFQRSMIRICTVFGGKNPHPNFLVG 221
Score = 88.5 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 41/394 (10%), Positives = 80/394 (20%), Gaps = 114/394 (28%)
Query: 110 LSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL 169
H D+ + L E + ++ G H + G P
Sbjct: 173 WDHPDYRLPPEADLMCVAHYLDALEFQRSMIRICTVFGGKNPHPNFLVGGMACSIDPNSS 232
Query: 170 VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRG----- 224
D + +++I + + N + + I V + G +
Sbjct: 233 ESINQVQMDQIKTWIDEIIEFV--NDCYYPDVLAIAGVYKDYF-DIGATHPNYLAVGLAG 289
Query: 225 ---SGAAWDLR-------------------KSQPYECYS--------------------- 241
SG R K P++ +
Sbjct: 290 SIFSGNPNKSRISSAHTAIKPGVILGGDIAKIHPFDPHKIEEYISSAWYEYSVGDDKPLT 349
Query: 242 -------------ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGP 288
+ F+ + + + + I R + G V
Sbjct: 350 PDKGETTVKYTGPQPPFEWLGDNDKYTWSKAPRYDGKPMQVGPIARMILAYAQGYEPVKQ 409
Query: 289 VSASDP---------------KIVPPKRAD------MKRSMESLIHHFK----------L 317
+ + M L+ + K
Sbjct: 410 ILDQAMATLGITPAQLNSTMGRTFARAAEATVSAQLMLDDYNQLVDNIKGGQIDVFDASK 469
Query: 318 YTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAM 368
+ + Y VE +G + +S +K R + P
Sbjct: 470 WEPSSWPAECQGYGFVEVSRGNLSHW-VSIKNSKVERYQAVVPTTWLAGGRDANGVTGPY 528
Query: 369 EFLCKG---HQLAD------VSAILGSLDIVFGE 393
E G H L + + S D
Sbjct: 529 EESLMGTGTHPLLNPKEPLEPMRTIHSYDPCMSC 562
>gi|121604875|ref|YP_982204.1| nickel-dependent hydrogenase large subunit [Polaromonas
naphthalenivorans CJ2]
gi|120593844|gb|ABM37283.1| nickel-dependent hydrogenase, large subunit [Polaromonas
naphthalenivorans CJ2]
Length = 618
Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 43/102 (42%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + LD V R G + RG E +++ + A + +R+ V A
Sbjct: 26 IEGHMRCEVNLDSNNVIRNAVSTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGCHALA 85
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI IP LIR + ++ ++ H ++
Sbjct: 86 SVRAVEDALGIVIPKNAYLIREIMAKTLQVHDHAVHFYHLHA 127
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 13/93 (13%), Positives = 25/93 (26%), Gaps = 16/93 (17%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQ 366
+ + + V AP+G G ++ + + P + +
Sbjct: 509 EKWDPATWPKEAKGVGVVAAPRGALGHWIKIK-DGRIENYQCVVPSTWNASPRDHKGQIG 567
Query: 367 AMEFLCKGHQLAD------VSAILGSLDIVFGE 393
A E +AD + L S D
Sbjct: 568 AFEASLMNTPVADPEQPVEILRTLHSFDPCMAC 600
>gi|238793592|ref|ZP_04637215.1| Hydrogenase-2 large chain [Yersinia intermedia ATCC 29909]
gi|238727007|gb|EEQ18538.1| Hydrogenase-2 large chain [Yersinia intermedia ATCC 29909]
Length = 528
Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats.
Identities = 37/387 (9%), Positives = 78/387 (20%), Gaps = 93/387 (24%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYF--- 156
L H +++ A+ L E + G H
Sbjct: 126 GQLGIFANGYWGHPAMALPPEVNLIAVAHYLQALECQRDANRIVAVLGGKTPHIQNLAVG 185
Query: 157 -RPGGVHQDIP-----------PELVEDIGCWCDSFPSALNDIS--------------DL 190
++ D+P ++ +G + + + D
Sbjct: 186 GVANPINLDMPSVLNLERLMLVKSFIDRLGSFIEQVYKVDTAVIAAHYPGWLNLGKGADY 245
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIR-----------GSGAAWDLRKSQPYEC 239
+ G + SG + +P
Sbjct: 246 YLSVPELPTDRKGETFLLPGGYLDKGTFRPIANHNDPYLIKGIAESGKHAWYQDDEPLAP 305
Query: 240 YSELDFDIPIGKHGD---CYDRYLVRMMEMRESVKIIR---------------------- 274
+ G D + + + E +
Sbjct: 306 WEGKTNPNYTGWQEDGKYSWVKAPTFYGKTVEVGPLAWLMCGLAADHAPTKQHFSDIGAA 365
Query: 275 ------QCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV-- 326
Q + + + +G + ++ + + E + P
Sbjct: 366 YQKLSGQAITQDQLPSTLGRIIGRAVHCCVLHETLAQQWTALVTNIGTGDVETFIKPNIP 425
Query: 327 --GE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCK 373
GE EAP+G +++ K + P + E
Sbjct: 426 LTGEIRGVGFEEAPRGMLSHWVVIK-DGKIANYQAVVPSTWNAGPRNYNDEPGPYEQALV 484
Query: 374 GHQLAD------VSAILGSLDIVFGEV 394
G +AD V + S D
Sbjct: 485 GTPVADPAKPLEVVRTIHSFDPCMSCA 511
Score = 89.2 bits (220), Expect = 9e-16, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 33/77 (42%)
Query: 45 LHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYS 104
+ RG E++++ A R+ V A AVE LG+E+P+ Q IR L
Sbjct: 1 MWRGMEEILQGNDPRDAWMIVQRICGVCTTIHAIASVRAVENALGMEVPVNAQHIRNLIL 60
Query: 105 EIGRILSHLLNVTTQAM 121
I H+++ +
Sbjct: 61 AAHSIHDHIVHFYQLSA 77
>gi|224584943|ref|YP_002638742.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|224469471|gb|ACN47301.1| hydrogenase-2 large subunit [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
Length = 567
Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ +V + G + RG E++++ + A R+ V +
Sbjct: 13 IEGHLRIDCEIENGVVSKA-WASGAMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHAIS 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A E L I++P+ Q IR + H+++ +
Sbjct: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113
Score = 97.3 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 19/91 (20%)
Query: 322 YHVPV-GE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAME 369
++P GE +EAP+G +++ + P + + E
Sbjct: 461 PNIPATGEFKGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYE 519
Query: 370 FLCKGHQLAD------VSAILGSLDIVFGEV 394
G +AD V + S D
Sbjct: 520 QSLVGTPIADPAKPLEVVRTIHSFDPCMACA 550
>gi|149204141|ref|ZP_01881109.1| hydrogenase protein large subunit [Roseovarius sp. TM1035]
gi|149142583|gb|EDM30628.1| hydrogenase protein large subunit [Roseovarius sp. TM1035]
Length = 596
Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 40/102 (39%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D + V R G + RG E +++ + A + +R+ V
Sbjct: 25 IEGHMRCEVNVDEQGVIRNAVSTGTMWRGLEVILKGRDPRDAWAFTERICGVCTGTHALT 84
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI IP IR + I H+++
Sbjct: 85 SVRAVEDALGITIPDNANSIRNIMQLNLEIHDHVVHFYHLHA 126
Score = 101 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 31/281 (11%), Positives = 64/281 (22%), Gaps = 49/281 (17%)
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
+ D P + P +L + + + I + +G +G
Sbjct: 300 MAYGDFPENPNDFSPANL-HLPRGAIINGNLNEVHEVDVRDPEQIQEFVDHSWYRYGEAG 358
Query: 220 VMIR-GSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
+ G + P + + + + E + R V
Sbjct: 359 KGLHPWDGETEANYELGPNAKGTRTNILEIDEAAKYSWIKAPRWKGHAMEVGPLARYVVG 418
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADM--------KRSMES-----LIHHF---------- 315
G + + + + R++ES L HF
Sbjct: 419 YAQGHEDIRNQVDGLLRALDVPFDAIFSTLGRTAARALESEYCGRLQKHFFDKLVQNIKN 478
Query: 316 --------KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA---- 363
+ + EAP+G G ++ + + P
Sbjct: 479 GDESTANIAKWDPSTWPKEAKGVGMTEAPRGALGHWIKIK-DGRIENYQCVVPTTWNGSP 537
Query: 364 -----HLQAMEFLCKGHQL--AD----VSAILGSLDIVFGE 393
++ A E + D + L S D
Sbjct: 538 RDTAGNIGAFEASLMNTPMERPDEPVEILRTLHSFDPCLAC 578
>gi|315637445|ref|ZP_07892656.1| quinone-reactive Ni/Fe-hydrogenase [Arcobacter butzleri JV22]
gi|315478235|gb|EFU68957.1| quinone-reactive Ni/Fe-hydrogenase [Arcobacter butzleri JV22]
Length = 594
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 42/101 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E+D V + L RG E +++ + A R+ V + A
Sbjct: 32 IEGHLRIEVEVDENNVIQKAYSSSTLWRGLETIVKNRDPRDAGFLMQRICGVCTFSHYRA 91
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI PI +L R L + + H+++
Sbjct: 92 GIEAVEDALGIVPPINAKLTRSLMNMALFMHDHIVHFYHLH 132
Score = 94.2 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 43/366 (11%), Positives = 84/366 (22%), Gaps = 101/366 (27%)
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
L+ L E + L G + H GGV + +G + F
Sbjct: 209 LSHYLKALEVQRDLAKLMAIFGGKQPHPQSLTVGGVTCVMDLLDPSRMGEYLTLFKVGAE 268
Query: 186 DIS-----DLLTGNRIFKQ-----RNVNIGTVKLEDAWGWGFSGVMIRGSGAAWD----- 230
I D++ +FK R + + + SG +D
Sbjct: 269 FIENAYQADIIMAASVFKDELSVTRPAGVMNFMAHQEMRLNKT-EFLFDSGIIFDGDLSK 327
Query: 231 --------------------LRKSQPYECYSEL------------------DFDIPIGKH 252
PY+ + + K
Sbjct: 328 VYDINENLITEEATHSWYENNEALHPYDGKTNPLYTGLRDMDTIGMDGEIVHSKVVDEKG 387
Query: 253 GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASD------------------P 294
+ + + E + ++ G K+ P+
Sbjct: 388 KYTWIKSPRYDGKAMEVGPLACILISYAKGNKKIVPIVDEFLQKTGLPKSALFTTLGRTA 447
Query: 295 KIVPPKRADMKRSMES---LIHHFKLYTEGY--------HVPVGEVYAAVEAPKGEFGVY 343
+ +A K +E+ LI + K+ + G V P+G +
Sbjct: 448 ARMLQVKAVAKHGLEAFHTLIENLKVDETTFTSYNIDKDKEYKGRFIGDV--PRGMLSHW 505
Query: 344 LISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLAD------VSAILGSLD 388
+ + P + + E G ++ D + I+ S D
Sbjct: 506 IRIK-NGVVENYQAVVPSTWNAGPIDTKGQMGPYEANLVGLKVQDISQPLEIIRIIHSFD 564
Query: 389 IVFGEV 394
Sbjct: 565 PCIACA 570
>gi|288942017|ref|YP_003444257.1| nickel-dependent hydrogenase large subunit [Allochromatium vinosum
DSM 180]
gi|288897389|gb|ADC63225.1| nickel-dependent hydrogenase large subunit [Allochromatium vinosum
DSM 180]
Length = 596
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 37/102 (36%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + LD + V R G + RG E ++ + A + R+ V
Sbjct: 26 IEGHMRCEVNLDEQNVIRNAVSTGTMWRGLEVILRGRDPRDAWAFTQRICGVCTGTHALT 85
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A+E L I+IP IR + HL++
Sbjct: 86 SVRAIEDALDIQIPENANSIRNIMQLTLYAHDHLVHFYHLHA 127
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 28/293 (9%), Positives = 61/293 (20%), Gaps = 52/293 (17%)
Query: 147 SGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGT 206
G A + L ++ ++ + Q V
Sbjct: 292 GGLSSQAVLSYGDIPERANDDSSDNQCLPRGAIINGKLEEVHEVDLRDPEQIQEFVA--- 348
Query: 207 VKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEM 266
S + G P S+ + + +
Sbjct: 349 --HSWFKYKDESKGLHPWDGVTEPNFVLGPNTKGSQTRIEAIDENAKYSWIKAPRWRGHA 406
Query: 267 RESVKIIRQCVNRLLGKNK-------------------------------VGPVSASDPK 295
E + R + G + +A +
Sbjct: 407 MEVGPLARYIIGYAKGIPEFKEPVEKVLTDLQLPVSALFSTLGRTAARGLEASWAAHKLR 466
Query: 296 IVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRC 355
K ++ +S + + + + EAP+G G +++ K
Sbjct: 467 HFQDKLVANLKAGDSATANPDKWEPRTWPKLTKGVGTTEAPRGALGHWVVI-EKGKIANY 525
Query: 356 KIRAPGYA---------HLQAMEFLCKGHQLA------DVSAILGSLDIVFGE 393
+ P ++ A E +A ++ L S D
Sbjct: 526 QAVVPTTWNGSPRDPAGNIGAFEAALLNTPVAVPDQPLEILRTLHSFDPCLAC 578
>gi|269861825|ref|XP_002650594.1| Ni,Fe-hydrogenase I large subunit [Enterocytozoon bieneusi H348]
gi|220065908|gb|EED43462.1| Ni,Fe-hydrogenase I large subunit [Enterocytozoon bieneusi H348]
Length = 174
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E+D +V G RG E +++ +T A R+ V P++ H
Sbjct: 12 IEGHLRVEMEVDNGVVTDA-WVSGGCFRGMELVVQDRTPEDAAQIVQRICGVCPVSHAHV 70
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
++A EK I+I ++IR + + SH+L T
Sbjct: 71 SSIAAEKAXHIKISNNARIIRNIIEGAQFLHSHILWFYTL 110
>gi|304308713|gb|ADF59499.2| hydrogen-uptake [NiFe] hydrogenase large subunit [Caminibacter
profundus]
Length = 276
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 42/101 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + LD V + L RG E +++ + A R+ V + A
Sbjct: 13 IEGHLRVEVVLDDNNVIKDAYSSATLWRGIEVILKGRDPRDAGFMTQRICGVCTYSHYKA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+AVE LGIE P+ +L R L + H+++
Sbjct: 73 GIMAVEDALGIEPPLNAKLTRELMNIALFFHDHMVHFYQLH 113
>gi|118582234|gb|ABL07495.1| quinone-reactive Ni/Fe-hydrogenase large subunit [Shewanella
decolorationis]
Length = 567
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 41/358 (11%), Positives = 72/358 (20%), Gaps = 90/358 (25%)
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A++ L E + G + H GGV + W
Sbjct: 189 AVSHYLKALEVQRVAAEMLAIFGGKQPHPQSLVVGGVTSVRDMLSPARLQEWKQKHAIVT 248
Query: 185 NDISDLLTGNRIFKQRNVNI------------------------------GTVKLEDAWG 214
+ I + + G + D G
Sbjct: 249 DFILRAYQADIVMAAEAFGTEASVLGGVNVKNFMATNDFVLANGEYLFDQGVIMKGDLAG 308
Query: 215 WGFSGVMIRGSGAAWDLRKSQ-PYECYSELDFDIPIGKH----------------GDCYD 257
+ + + P Y G +
Sbjct: 309 VSDINPDLIAEDVSHAWYSADAPQHPYDGTTIPNYTGFVERDTVYGKLPTLDGDGKYSWV 368
Query: 258 RYLVRMMEMRESVKIIRQCVNRLLGKNKV----------------------GPVSASDPK 295
+ E E + V+ G V G +A +
Sbjct: 369 KSPRYQGEPVEVGPLSSLLVSYARGNKVVVDAVNALLARTGLPVEALFTTLGRTAARMLQ 428
Query: 296 IVPPKRADMKRSMESLIHHFKLYTEGYHV---PVGEVYA--AVEAPKGEFGVYLISDGGN 350
V + ++ L + T P E +EAP+G ++
Sbjct: 429 TVIVAQEGLRTFDALLTNIQSDETTYVKPHIDPNKEYVGHAMIEAPRGMLSHWIRIK-NG 487
Query: 351 KPYRCKIRAPGYAH---------LQAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
+ P + + E G +L D V I+ S D
Sbjct: 488 VVENYQAVVPTTWNAGPVDANGKIGPYEASLIGLKLEDPTKPLEVIRIIHSFDPCMAC 545
Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 42/101 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E+D V L RG E +++ +T + R+ V +
Sbjct: 13 IEGHLRIEVEVDENNVINKAWSSSTLWRGIEVILKGRTPMDVGLIVQRICGVCTYSHYRC 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI+IP+ + +R L + H+++
Sbjct: 73 GTEAVENALGIQIPLNAKYLRSLMQTSLYMHDHIVHFYHLH 113
>gi|307637321|gb|ADN79771.1| Quinone-reactive Ni/Fe-hydrogenase large chain [Helicobacter pylori
908]
gi|325995912|gb|ADZ51317.1| Quinone-reactive Ni/Fe-hydrogenase large chain [Helicobacter pylori
2018]
gi|325997506|gb|ADZ49714.1| Quinone-reactive Ni/Fe-hydrogenase large subunit precursor protein
[Helicobacter pylori 2017]
Length = 578
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 42/101 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D + V L RG E +I+ + A R+ V + A
Sbjct: 13 IEGHLRIEVIVDDDNVITDAFSSSTLFRGLETIIKGRDPRDAGFIAQRICGVCTYSHYKA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI P+ QL+R L + H+++ T
Sbjct: 73 GVTAVENALGITPPLNAQLVRSLMNMALLFHDHVVHFYTLH 113
Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 18/83 (21%)
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQ 376
G V P+G ++ + P + A E G +
Sbjct: 475 KGRYIGQV--PRGMLSHWVRIK-NGVVENYQAVVPSTWNAGPRDSKNQRGAYEMSLIGTK 531
Query: 377 LAD------VSAILGSLDIVFGE 393
+AD + + S D
Sbjct: 532 IADLTQPLEIIRTIHSFDPCIAC 554
>gi|260575859|ref|ZP_05843855.1| nickel-dependent hydrogenase large subunit [Rhodobacter sp. SW2]
gi|259022012|gb|EEW25312.1| nickel-dependent hydrogenase large subunit [Rhodobacter sp. SW2]
Length = 581
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 34/382 (8%), Positives = 82/382 (21%), Gaps = 109/382 (28%)
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP------------- 167
++ A+ L + + +++ + G H + G
Sbjct: 184 ANLMAVAHYLEALQWQREVVQIHTIFGGKNPHPNFLVGGSPSPISVNPGDSGGVSGTALN 243
Query: 168 ----ELVEDIGCWCDSFPS--ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG-- 219
++ F + D + + + + R +G + G
Sbjct: 244 MTGLGQIKATIAKMQEFVDQVYVPDTLAIASYYKDWFARGEGVGNFMTFGDFPADGMGDP 303
Query: 220 -------------------------VMIRGSGAAWDLRKS--------QPYECYSELDFD 246
+ PY+ ++L++
Sbjct: 304 STWLIPSGAILNRDLSTIHPVNLTDPTEVQEFVSHSWYDYAAGKNGGLHPYDGETKLNYT 363
Query: 247 IPIGKHG-------DCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
P + + + + E + R + G ++A K +
Sbjct: 364 GPKPPYAQLDVEQSYSWLKSPRWKGNVMEVGPLARILMLHAKGHEPTMELAAMALKTLDL 423
Query: 300 KRADMKRSM-------------------------------ESLIHHFKLYTEGYHVPVGE 328
M +M + +H+ +
Sbjct: 424 PLTAMFSTMGRTAARTLESKIIADQMPTWYDNLVANIKAGDLAVHNEAKWDPATWPAEAR 483
Query: 329 VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKG-HQLA 378
+EAP+G +++ K + P + E H L
Sbjct: 484 GVGFMEAPRGALAHWIVIK-NGKIENYQAVVPSTWNAGPRDQNGKPGPYEAALMDRHTLF 542
Query: 379 D------VSAILGSLDIVFGEV 394
D + + S D
Sbjct: 543 DPKQPLEIQRTIHSFDPCIACA 564
Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 2/103 (1%)
Query: 20 AHGVLRLILELD-GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G LR+ E + G + RG E +++ + +A + R+ V +
Sbjct: 13 IEGHLRIEAETAADGSITSA-YSSGTMVRGIELILQGRDPREAWAFAQRICGVCTLVHGV 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A AVE L IP QLIR L + H+++
Sbjct: 72 ASVRAVENALNYPIPPNAQLIRNLMIAAQYVHDHVMHFYHLHA 114
>gi|15611642|ref|NP_223293.1| hydrogenase, large subunit [Helicobacter pylori J99]
gi|4155116|gb|AAD06147.1| Hydrogenase, large subunit [Helicobacter pylori J99]
Length = 578
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 42/101 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D + V L RG E +I+ + A R+ V + A
Sbjct: 13 IEGHLRIEVIVDDDNVITDAFSSSTLFRGLETIIKGRDPRDAGFIAQRICGVCTYSHYKA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI P+ QL+R L + H+++ T
Sbjct: 73 GVTAVENALGITPPLNAQLVRSLMNMALLFHDHVVHFYTLH 113
Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 18/83 (21%)
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQ 376
G V P+G ++ + P + A E G +
Sbjct: 475 KGRYIGQV--PRGMLSHWVRIK-NGVVENYQAVVPSTWNAGPRDSKNQRGAYEMSLIGTK 531
Query: 377 LAD------VSAILGSLDIVFGE 393
+AD + + S D
Sbjct: 532 IADLTQPLEIIRTIHSFDPCIAC 554
>gi|186474337|ref|YP_001863308.1| nickel-dependent hydrogenase large subunit [Burkholderia phymatum
STM815]
gi|184198296|gb|ACC76258.1| nickel-dependent hydrogenase large subunit [Burkholderia phymatum
STM815]
Length = 596
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 37/102 (36%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + LD V G + RG E +++ + A + +R+ V
Sbjct: 25 IEGHMRCEVNLDSNNVITNAVSTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGAHALT 84
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE L I IP LIR L HL++
Sbjct: 85 SVRAVESALNIPIPDNANLIRNLMQATLWAHDHLVHFYHLHA 126
Score = 97.3 bits (241), Expect = 4e-18, Method: Composition-based stats.
Identities = 37/393 (9%), Positives = 81/393 (20%), Gaps = 112/393 (28%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE--- 168
H ++ A+ L + +++++ + G H + G +
Sbjct: 187 HPAYRLPPDANLMAVAHYLEALDFQKEIVKVHTVFGGKNPHPNWLVGGMPCAINIDDVGA 246
Query: 169 ----LVEDIGCWCDSFPSALNDISDLLTGNR-----IFKQRNVNIGTVKLEDAWGWGFS- 218
+E + + + + +K G + + +G
Sbjct: 247 VGAINMERLNLVSRIIDETIKFYDQVYLPDVIAIAGFYKDWGSIGGGLSSQSVLSYGDFP 306
Query: 219 --------------------------------GVMIRGSGAAWDLRKS-------QPYEC 239
A PY+
Sbjct: 307 DHANDYSAQSLLVPRGAVINGNFNEIHDVDLCNPDEIQEFVAHSWYCYPEGTHGLHPYDG 366
Query: 240 YSELDF-------------DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKV 286
+E F + + E + R + + +
Sbjct: 367 QTEPHFELGKATRGSKTRIKQIDESGKYSWIKAPRWRGHPMEVGPLARYLIGYHQKRTDI 426
Query: 287 GPVSASDPKIVPPKRAD---------------------MKRSMESLIHHFK--------- 316
+ + + A MK E L+ + K
Sbjct: 427 RETVDALLRRLDVPLAALNSTLGRTAARALEGQWAAYKMKYFFERLMANIKAGDISTANV 486
Query: 317 -LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQ 366
+ EAP+G G +L K + P + +
Sbjct: 487 DKWQPSTWPSTVRGVGFTEAPRGALGHWLKIRDT-KIDSYQCIVPTTWNGSPRDEVGRIG 545
Query: 367 AMEFLCKGHQLA------DVSAILGSLDIVFGE 393
A E ++A ++ L S D
Sbjct: 546 AFEASLIQTKMARPDEPLEILRTLHSFDPCLAC 578
>gi|218260474|ref|ZP_03475767.1| hypothetical protein PRABACTJOHN_01430 [Parabacteroides johnsonii
DSM 18315]
gi|218224515|gb|EEC97165.1| hypothetical protein PRABACTJOHN_01430 [Parabacteroides johnsonii
DSM 18315]
Length = 534
Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats.
Identities = 28/195 (14%), Positives = 57/195 (29%), Gaps = 31/195 (15%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +++ ++ G + RG E +++ + A + R+ V
Sbjct: 13 IEGHLRIEADIENGKIKDA-YSSGTMVRGIETIVKDRDPRDAWVFVGRVCGVCTSIHSLC 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM------------------ 121
AVE I IP Q++R + + + + H+++
Sbjct: 72 SVRAVENAFNIVIPPNAQMVRNIMTAVLYMHDHVVHFYQLHALDWVDVVSALKADPAEAS 131
Query: 122 --------DVGALTPPLWGFEEREKLMVFYERAS----GSRMHAAYFRPGGVHQDIPPEL 169
+ T +ER V + G H AY +
Sbjct: 132 LLAQKLSPWPKSSTGYFTALKERLNKFVGSGQLGIFANGYWGHPAYKLTPEQNLIAVAHY 191
Query: 170 VEDIGCWCDSFPSAL 184
+E + +
Sbjct: 192 LEALEWQKEIVKVHA 206
Score = 93.9 bits (232), Expect = 4e-17, Method: Composition-based stats.
Identities = 48/373 (12%), Positives = 84/373 (22%), Gaps = 96/373 (25%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H T ++ A+ L E +++++ + G H Y G
Sbjct: 162 GQLGIFANGYWGHPAYKLTPEQNLIAVAHYLEALEWQKEIVKVHAVFGGKNPHPNYLVGG 221
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALND---------ISDLLTGNRIFKQRNVNIG----T 206
E L + I DLL ++K +G
Sbjct: 222 MPCSIDLNEANAINTERLALVKQKLQEAKTFIDQVYIPDLLMIADVYKDEWSKLGGGVKN 281
Query: 207 VKLEDAWGWGFSGV-----MIRGSGAAWDLRKSQPYEC--------YSELDFDIPIG--- 250
+ G M RG DL K P + Y +
Sbjct: 282 YLAYGDFPMYEYGETENYKMPRGIVLDRDLSKVHPVDANSPEEIKEYIYHSWYNYTQGDK 341
Query: 251 --------------------------KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKN 284
+ + + E E + R V GK
Sbjct: 342 AGLHPYEGETNLNYTGPRPPYTHLNVEDKYSWIKTPRWKEEPMEVGPLARMIVAYAAGKE 401
Query: 285 KVGPVSASDPKIVPPKRADM-------------------------KRSMESLIHHFKLYT 319
+ K + + R +++L +
Sbjct: 402 PQKSLIDDTLKQLDLPLEALFSTLGRTAARGLETKLTADWALEFYDRLIKNLENGDSRMV 461
Query: 320 EGY------HVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH--------- 364
Y + EAP+G +++ NK ++ P +
Sbjct: 462 NHYMWESEAWPQHAQGVGLTEAPRGALAHFIVI-ENNKVKNYQMVVPTTWNASPRDEIGK 520
Query: 365 LQAMEFLCKGHQL 377
L A E G +
Sbjct: 521 LSAYESSLIGTPI 533
>gi|197117756|ref|YP_002138183.1| [NiFe]-hydrogenase large subunit [Geobacter bemidjiensis Bem]
gi|197087116|gb|ACH38387.1| periplasmically oriented, membrane-bound [NiFe]-hydrogenase large
subunit [Geobacter bemidjiensis Bem]
Length = 571
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ LE +G + RG EK++E + A + R+ V A
Sbjct: 14 IEGHLRIELEAEGGRIGNA-WACATQFRGIEKILEGRDPRDAWAFAQRICGVCTGVHAIA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE + IP +LIR L S + + H+++
Sbjct: 73 SIRAVEDAIKCRIPESAELIRNLVSGMATLQDHVMHFYHLHA 114
Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats.
Identities = 48/383 (12%), Positives = 88/383 (22%), Gaps = 101/383 (26%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H ++ A+ L + + +++ + +G H Y G +
Sbjct: 174 HPAYRLPPEANLMAVAHYLEALKWQREIIKLHTIFAGKNPHPNYLVGGMATSINLDNQLT 233
Query: 172 DIGCWCDSFPSALND--------ISDLLTGNRIFKQRNVNIGT----VKLEDAWGWGFSG 219
D + + + F +IG + + +G
Sbjct: 234 INKVRLDQLGELIREARRFVDEVYYPDVMAIAGFYPEYASIGVSSPTLMAVGESAFSCAG 293
Query: 220 -----VMIRGSGAAWDLRKSQPYEC-------------YSELDFDIPIGKHG-------- 253
+ G D R S P+ Y E D G
Sbjct: 294 TPAGKPVAAGLLMDGDYRTSHPFNPRMVAEYVSSAWYLYPEGDRQGLHPWQGRTEPNYTG 353
Query: 254 -------------DCYDRYLVRMMEMRESVKIIR-------------QCVNRLLGKNKVG 287
+ + + R Q NR LGK K G
Sbjct: 354 PKPPYRQLSDQEKYTWCKAPRYDGRPVQVGPNARIMLAYAQGHPDTVQLANRDLGKLKAG 413
Query: 288 PVSASDPKIVPPKRA--------DMKRSMESL----------IHHFKLYTEGYHVPVGEV 329
+ + RA M+ +L + +L+ +
Sbjct: 414 VEALNSTLGRTYCRALESVILARRMEEWFAALNERIRSGDVSTFNAELWEPESWPKQAQG 473
Query: 330 YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKG---HQL 377
+EA +G ++ + R + P + + E G H L
Sbjct: 474 MGYLEAARGTLSHWVEI-ENGRIARYQCVVPSTWNSSGRDPNGLMGPYEQALAGDKKHPL 532
Query: 378 AD------VSAILGSLDIVFGEV 394
D V + S D
Sbjct: 533 VDPKRPVEVLRTIHSFDPCLSCA 555
>gi|288961727|ref|YP_003452037.1| hydrogenase large subunit [Azospirillum sp. B510]
gi|288914007|dbj|BAI75493.1| hydrogenase large subunit [Azospirillum sp. B510]
Length = 604
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 43/102 (42%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D + + R G + RG E +++ + A + +R+ V
Sbjct: 27 IEGHMRCEVNVDSDNIIRNAVSTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGCHALT 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE L I IP LIR + ++ +I H+++
Sbjct: 87 SVRAVEDALQIRIPKNAHLIREIMAKTLQIHDHIVHFYHLHA 128
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 41/389 (10%), Positives = 85/389 (21%), Gaps = 117/389 (30%)
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL----------- 169
D+ A+T L + ++ ++ + G H Y G
Sbjct: 199 ADLMAVTHYLEALDLQKDIVKIHTILGGKNPHPNYMVGGVPCAINLDGTGASGAPLNMER 258
Query: 170 VEDIGCWCDSFPSALNDIS--DLLTGNRIFKQRNVNIGT-------------VKLEDAWG 214
+ I + ++++ D+L +K G V + +
Sbjct: 259 LNFIRARIQEAAAFIDNVYLPDVLAIASFYKDWLYGGGLSATNVMDYGDYEKVPYDHSTC 318
Query: 215 WGFSGVMIRG---SGAAWDLR------KSQPYECYSELDFDIPIGKH------------- 252
GV++ G D R + + Y D +
Sbjct: 319 QLPGGVILNGNWNEVHPIDPRDPAQVQEFVAHSWYHYEDESKGLHPWDGVTQAKFELGAK 378
Query: 253 ---------------GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKN------------- 284
+ + E + R + G
Sbjct: 379 TKGTRTDIKELDEAAKYSWIKAPRWRGHAVEVGPLSRYILAYAHGVGYVKDQIAESLGAF 438
Query: 285 ---------KVGPVSASDPKIVPPKRA------DMKRSMESLIHHFK----------LYT 319
+ + + + M +LI + K +
Sbjct: 439 NRLAGTNFTPQQALPTTIGRTLARALECQYCCTMMMDDWNALIANIKAGDSATANVEKWD 498
Query: 320 EGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA---------HLQAMEF 370
+ V AP+G G ++ K + P ++ A E
Sbjct: 499 PKTWPKEAKGVGTVAAPRGGLGHWIGIK-DGKIDNYQCVVPTTWNGSPRDPKGNIGAFEA 557
Query: 371 LCKGHQLA------DVSAILGSLDIVFGE 393
+A ++ L S D
Sbjct: 558 SLMNTPMARPEEPVEILRTLHSFDPCLAC 586
>gi|253701513|ref|YP_003022702.1| nickel-dependent hydrogenase large subunit [Geobacter sp. M21]
gi|251776363|gb|ACT18944.1| nickel-dependent hydrogenase large subunit [Geobacter sp. M21]
Length = 571
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ LE +G + RG EK++E + A + R+ V A
Sbjct: 14 IEGHLRIELEAEGGRIGNA-WACATQFRGIEKILEGRDPRDAWAFAQRICGVCTGVHAIA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE + IP +LIR L S + + H+++
Sbjct: 73 SIRAVEDAIKCRIPESAELIRNLVSGMATLQDHVMHFYHLHA 114
Score = 102 bits (255), Expect = 9e-20, Method: Composition-based stats.
Identities = 35/383 (9%), Positives = 84/383 (21%), Gaps = 101/383 (26%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELV- 170
H ++ A+ L + + +++ + +G H Y G +
Sbjct: 174 HPAYRLPPEANLMAVAHYLEALKWQREVIKLHTIFAGKNPHPNYLVGGMATSINLDNQLT 233
Query: 171 ------EDIGCWCDSFPSALND-ISDLLTGNRIFKQRNVNIGT----------------- 206
+ +G +++ + F +IG
Sbjct: 234 INKVRLDQLGEQIRQARRFVDEVYYPDVMAIAGFYPEYASIGVSSPTLMAVGESAFSCSG 293
Query: 207 --------------------------VKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ E + G +++P+
Sbjct: 294 TPAGKPVAAGLLMDGDYRTPHPFNPRMVAEYVSSAWYLYPEGDRQGLHPWQGRTEPHYTG 353
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+ + + + + + R + G + ++ D I+
Sbjct: 354 PKPPYSRLSDQEKYTWCKASRYDGRPVQVGPNARIMLAYAQGHPETVQLANRDLGILKAG 413
Query: 301 RA---------------------DMKRSMESL----------IHHFKLYTEGYHVPVGEV 329
M+ +L + L+ +
Sbjct: 414 VEALNSTLGRTYCRALESVILARRMEEWFAALNERIRSGDVSTFNADLWEPESWPKQAQG 473
Query: 330 YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKG---HQL 377
+EA +G ++ D + R + P + + E G H L
Sbjct: 474 MGFMEAARGTLSHWVEID-NGRISRYQCVVPSTWNSSGRDANGLMGPYEQALAGDKKHPL 532
Query: 378 AD------VSAILGSLDIVFGEV 394
D V + S D
Sbjct: 533 VDAKRPVEVLRTIHSFDPCLSCA 555
>gi|167629564|ref|YP_001680063.1| uptake [ni/fe] hydrogenase, large subunit [Heliobacterium
modesticaldum Ice1]
gi|167592304|gb|ABZ84052.1| uptake [ni/fe] hydrogenase, large subunit [Heliobacterium
modesticaldum Ice1]
Length = 578
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 1/104 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ ++G + G + RG E ++ + A R+ V A
Sbjct: 13 IEGHLRVEAMVEGGKIVDA-VSAGTMIRGLEIILRDRDPRDAWALVQRICGVCTTIHALA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+VE L I IP +LIR + + H+++
Sbjct: 72 SVRSVEDALKIRIPKNAELIRNIMFTTLYVHDHVVHFYHLHAPD 115
Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats.
Identities = 46/406 (11%), Positives = 90/406 (22%), Gaps = 110/406 (27%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H ++ A+ L +++++ + G H Y G
Sbjct: 162 GQLGIFANAYWGHPAYKLPPEANLMAVAHYLEALSWQKEIVKIHTIFGGKNPHPNYVVGG 221
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALNDIS---------DLLTGNRIFKQRNVNIGTVKLE 210
+ +++ DLL +K G V
Sbjct: 222 MASAIDINSDNALNIERFNMIGRLIDEAMEFVEQVYIPDLLAIASFYKDTAAYGGGVGNF 281
Query: 211 DAWGWGFS------------------------------GVMIRGSGAAWDLRKS-----Q 235
+G + K+
Sbjct: 282 LCYGDLPTTHINDPLGFLFPRGVILNKNLGEVLDVDPRDPEQILEYTDHSWYKNSKSGLH 341
Query: 236 PYECYSELDFDIP-----------IGKHGDCYDRYLVRMMEMRESVKIIRQCV------- 277
P+ + + + P + + + E + R V
Sbjct: 342 PWAGETNIHYTGPKPPYKTLDESGAFNQAYSWLKSPRWREKSVEVGPLARMLVAYAKKDC 401
Query: 278 ----------NRLLGKNKVGPVSASDPKIVPPKR--------ADMKRSMESLIHHFK--- 316
+++LG VGP + R A +K+ L+ + K
Sbjct: 402 KAHDLVKSEVDKVLGGLGVGPEALFSTLGRTAARGIETKLCAAWLKQFYNELLANIKSGD 461
Query: 317 -------LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ--- 366
+ + EAP+G G ++ K + P +
Sbjct: 462 QTTFNKERWEPSTWDKDCKGVGIAEAPRGALGHWIHI-QNGKIANYQCVVPTTWNGSPKD 520
Query: 367 ------AMEFLCKGHQL------ADVSAILGSLDIVFGE----VDR 396
A+E G L ++ + S D DR
Sbjct: 521 HKNQPGAIEAALIGTPLVKPEEPVELLRTIHSFDPCLACAAHLTDR 566
>gi|149194555|ref|ZP_01871651.1| Nickel-dependent hydrogenase, large subunit [Caminibacter
mediatlanticus TB-2]
gi|149135299|gb|EDM23779.1| Nickel-dependent hydrogenase, large subunit [Caminibacter
mediatlanticus TB-2]
Length = 569
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 19/101 (18%), Positives = 36/101 (35%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D + + RG E +++ + R+ V +
Sbjct: 13 IEGHLRIEVVVDDNNIVTDAYSSSTMFRGIEPILKGRDPRDCGLIAMRICGVCTVTHYQR 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE I +P +L+R L + HL++
Sbjct: 73 SIEAVENAYNIVVPKNARLVRNLIQSTLFMHDHLVHYYHLH 113
Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats.
Identities = 39/361 (10%), Positives = 78/361 (21%), Gaps = 88/361 (24%)
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
++ A+T FE + L G H GGV E + + +
Sbjct: 188 QNLMAITNYFKAFEIQRFLGSMMATLGGKDPHPQSIVVGGVTSIKNILDNEKMTNFYNLA 247
Query: 181 PSALNDISDLLTGNRIFK-----------------------------------QRNVNIG 205
+ I + + G
Sbjct: 248 LKVRDFIKRAYIPDMYMLADVYKDDMINQVGGGLKNFLVYGGFPLEDGDLNSVEMFFPQG 307
Query: 206 TVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKH------------- 252
+ + + Y G
Sbjct: 308 VIYNANLDDIKDFDANLVTEDVTHAWYSGGNDSPYEADTIPNYTGFKEVVDNVAYLDTDG 367
Query: 253 GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPK-------IVPPKRADMK 305
+ + + E E + R V + K + +
Sbjct: 368 KYSWIKSPLYNDERMEVGPLARMLVGYKKSNTIKTYMQNFLDKSNTNINDFISAVGRTIA 427
Query: 306 RSMESLIHHFKL-----------------YTEGYHVPVGEVYAAVEAPKGEFGVYLISDG 348
R++ES I K+ +P + ++ EAP+G G ++
Sbjct: 428 RAIESEIISDKIFDFFDELKLNLQNDTSSVASYTEIPNTQGFSTEEAPRGALGHWVRI-E 486
Query: 349 GNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
+K + P + A E G +L++ + ++ S D
Sbjct: 487 NSKVANYQTVVPSTWNAAPRDYKGRRGAYEESLIGVKLSNIDEPLEILRVVHSFDPCIAC 546
Query: 394 V 394
Sbjct: 547 A 547
>gi|160875036|ref|YP_001554352.1| nickel-dependent hydrogenase large subunit [Shewanella baltica
OS195]
gi|217973572|ref|YP_002358323.1| nickel-dependent hydrogenase large subunit [Shewanella baltica
OS223]
gi|304411346|ref|ZP_07392960.1| nickel-dependent hydrogenase large subunit [Shewanella baltica
OS183]
gi|307305332|ref|ZP_07585080.1| nickel-dependent hydrogenase large subunit [Shewanella baltica
BA175]
gi|160860558|gb|ABX49092.1| nickel-dependent hydrogenase large subunit [Shewanella baltica
OS195]
gi|217498707|gb|ACK46900.1| nickel-dependent hydrogenase large subunit [Shewanella baltica
OS223]
gi|304350201|gb|EFM14605.1| nickel-dependent hydrogenase large subunit [Shewanella baltica
OS183]
gi|306911635|gb|EFN42060.1| nickel-dependent hydrogenase large subunit [Shewanella baltica
BA175]
gi|315267268|gb|ADT94121.1| nickel-dependent hydrogenase large subunit [Shewanella baltica
OS678]
Length = 567
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 42/101 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E+D V L RG E +++ +T + R+ V +
Sbjct: 13 IEGHLRIEVEVDENNVISKAWSSSTLWRGIEVILKGRTPMDVGLIVQRICGVCTYSHYRC 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI+IP+ + +R L + H+++
Sbjct: 73 GTEAVENALGIQIPLNARYLRSLMQTSLYMHDHIVHFYHLH 113
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 42/358 (11%), Positives = 72/358 (20%), Gaps = 90/358 (25%)
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
AL+ L E + G H GGV + W +
Sbjct: 189 ALSHYLKALEVQRVAAEMLAIFGGKSPHPQSVVVGGVTSVRDMLSPARLQEWKQKHATVT 248
Query: 185 NDISDLLTGNRIFKQRNVNI------------------------------GTVKLEDAWG 214
+ I + + G + D G
Sbjct: 249 DFILRAYQADIVMAAEAFGTEPSVLGGVNVKNFMATDDFVLANGEYMFNQGVIMNGDLAG 308
Query: 215 WGFSGVMIRGSGAAWDLRKSQ-PYECYSELDFDIPIGKH----------------GDCYD 257
+ + + P Y G +
Sbjct: 309 VSDVNPDLIAEDVSHAWYSADAPQHPYDGTTIPNYTGFVERDTVYGKLPTLDGDGKYSWV 368
Query: 258 RYLVRMMEMRESVKIIRQCVNRLLGKNKV----------------------GPVSASDPK 295
+ E E + V+ G V G +A +
Sbjct: 369 KSPRYQGEPVEVGPLACLLVSYARGNKVVVDSVNALLARTGLPVAALFTTLGRTAARMLQ 428
Query: 296 IVPPKRADMKRSMESLIHHFKLYTEGYHV---PVGEVYA--AVEAPKGEFGVYLISDGGN 350
V + +K L + + P E +EAP+G ++
Sbjct: 429 TVIVAQEGLKTFDALLTNIQSDESTYVKPNIDPSKEYIGHAMIEAPRGMLSHWIRIK-NG 487
Query: 351 KPYRCKIRAPGYAH---------LQAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
+ P + + E G +L D V I+ S D
Sbjct: 488 VIENYQAVVPTTWNAGPVDANGKMGPYEASLIGLKLEDPTKPLEVIRIIHSFDPCMAC 545
>gi|153000439|ref|YP_001366120.1| nickel-dependent hydrogenase large subunit [Shewanella baltica
OS185]
gi|151365057|gb|ABS08057.1| nickel-dependent hydrogenase large subunit [Shewanella baltica
OS185]
Length = 567
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 42/358 (11%), Positives = 72/358 (20%), Gaps = 90/358 (25%)
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
AL+ L E + G H GGV + W +
Sbjct: 189 ALSHYLKALEVQRVAAEMLAIFGGKSPHPQSVVVGGVTSVRDMLSPARLQEWKQKHATVT 248
Query: 185 NDISDLLTGNRIFKQRNVNI------------------------------GTVKLEDAWG 214
+ I + + G + D G
Sbjct: 249 DFILRAYQADIVMAAEAFGTEPSVLGGVNVKNFMATDDFVLANGEYMFNQGVIMNGDLAG 308
Query: 215 WGFSGVMIRGSGAAWDLRKSQ-PYECYSELDFDIPIGKH----------------GDCYD 257
+ + + P Y G +
Sbjct: 309 VSDVNPDLIAEDVSHAWYSADAPQHPYDGTTIPNYTGFVERDTVYGKLPTLDGDGKYSWV 368
Query: 258 RYLVRMMEMRESVKIIRQCVNRLLGKNKV----------------------GPVSASDPK 295
+ E E + V+ G V G +A +
Sbjct: 369 KSPRYQGEPVEVGPLACLLVSYARGNKVVVDSVNALLARTGLPVAALFTTLGRTAARMLQ 428
Query: 296 IVPPKRADMKRSMESLIHHFKLYTEGYHV---PVGEVYA--AVEAPKGEFGVYLISDGGN 350
V + +K L + + P E +EAP+G ++
Sbjct: 429 TVIVAQEGLKTFDALLTNIQSDESTYVKPNIDPSKEYIGHAMIEAPRGMLSHWIRIK-NG 487
Query: 351 KPYRCKIRAPGYAH---------LQAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
+ P + + E G +L D V I+ S D
Sbjct: 488 VIENYQAVVPTTWNAGPVDANGKMGPYEASLIGLKLEDPTKPLEVIRIIHSFDPCMAC 545
Score = 103 bits (256), Expect = 8e-20, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 43/101 (42%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E+D + V L RG E +++ +T + R+ V +
Sbjct: 13 IEGHLRIEVEVDEKNVISKAWSSSTLWRGIEVILKGRTPMDVGLIVQRICGVCTYSHYRC 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI+IP+ + +R L + H+++
Sbjct: 73 GTEAVENALGIQIPLNARYLRSLMQTSLYMHDHIVHFYHLH 113
>gi|261885211|ref|ZP_06009250.1| quinone-reactive Ni/Fe-hydrogenase large chain [Campylobacter fetus
subsp. venerealis str. Azul-94]
Length = 205
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 40/105 (38%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D V + L RG E +++ + A R+ V + A
Sbjct: 14 IEGHLRIEVVVDDNSVVKEAYSGSTLWRGIETIVKGRDPRDAGFMTQRICGVCTFSHYRA 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
AVE LGI P+ +L R L + + H ++
Sbjct: 74 GIEAVENALGIVPPLNAKLPRTLMNAALFLHDHPVHFYQLHALDY 118
>gi|116625968|ref|YP_828124.1| nickel-dependent hydrogenase large subunit [Candidatus Solibacter
usitatus Ellin6076]
gi|116229130|gb|ABJ87839.1| nickel-dependent hydrogenase, large subunit [Candidatus Solibacter
usitatus Ellin6076]
Length = 566
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E+D V G + RG E+++ + +A + R V +
Sbjct: 13 IEGHLRIDVEVDAGRVSGA-WASGTMWRGIEQILLGRDPREAWVFAQRFCGVCTTVHAIS 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LG+ IP Q IR L + H+++
Sbjct: 72 SVRAVEDALGLVIPANAQYIRNLILIAHALHDHIVHFYHLCA 113
Score = 98.5 bits (244), Expect = 2e-18, Method: Composition-based stats.
Identities = 36/287 (12%), Positives = 68/287 (23%), Gaps = 65/287 (22%)
Query: 172 DIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDL 231
IG + + + L + + +GV S L
Sbjct: 264 AIGAMYPEWLKFGAGVMNYLAIPDLPLDAEATRFDLPGGIIMDGALAGVTPIASHHDERL 323
Query: 232 RK----------------SQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIR- 274
RK P+E + D+ + + + + + + +
Sbjct: 324 RKGVTENVARAFYKGKETHHPWEGETIPDYTEYSAEGKYSWVKAPRFEGKPMQVGPLAQV 383
Query: 275 -------QCVNRLLGKNKVGPVSASDPKIVPPKRA--------------------DMKRS 307
+ R +G +S+ V P MK
Sbjct: 384 LVGYASGHALTRKWADLALGTISSIAKTQVTPAALHSTLGRDAARAIRAAMLSDLAMKHW 443
Query: 308 MESLIHHFKLYTEGYHVP---VGE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
+ + K T+ + P GE EAP+G + + K + P
Sbjct: 444 DLLVQNIGKGDTDIFVKPNFPKGEIRGAGFHEAPRGTLSHWAVVT-DGKITNYQAVVPTT 502
Query: 363 AHLQ---------AMEFLCKGHQLADVS------AILGSLDIVFGEV 394
+ E G+ +AD + S D
Sbjct: 503 WNASPRDEKNIPGPYEASLNGNPIADAEKPLEVLRTVHSFDPCLACA 549
>gi|94310241|ref|YP_583451.1| nickel-dependent hydrogenase, large subunit [Cupriavidus
metallidurans CH34]
gi|93354093|gb|ABF08182.1| HoxG hydrogenase 1, large subunit Uptake hydrogenase large subunit
(Hydrogenlyase) (Membrane-bound hydrogenase large
subunit) (belongs to CMGI-2) [Cupriavidus metallidurans
CH34]
Length = 619
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 44/102 (43%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR + LD V R G + RG E +++ + A + +R+ V A
Sbjct: 26 IEGHLRCEVNLDSNNVIRNAVSTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGCHALA 85
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI IP+ LIR + ++ ++ H ++
Sbjct: 86 SVRAVEDALGIRIPLNAHLIREMMAKTLQVHDHAVHFYHLHA 127
Score = 90.4 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 33/132 (25%), Gaps = 20/132 (15%)
Query: 277 VNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAP 336
+ R L + D + + S + + + + V AP
Sbjct: 475 LARALESQYAAEMMMDDFRQLVQNIKAGDTS----TANVEKWDPKTWPKEAKGVGTVGAP 530
Query: 337 KGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQL------ADVS 381
+G G ++ + + P + + A E + ++
Sbjct: 531 RGMLGHWIRIK-DGRIENYQCVVPTTWNGSPRDHKGQIGAFEASLMNTPMVNPEQPLEIL 589
Query: 382 AILGSLDIVFGE 393
L S D
Sbjct: 590 RTLHSFDPCLAC 601
Score = 37.6 bits (86), Expect = 3.4, Method: Composition-based stats.
Identities = 14/123 (11%), Positives = 34/123 (27%)
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
++ A+T L + +++ + + G H Y G
Sbjct: 198 ANLMAVTHYLEALDLQKEWVKVHTIFGGKNPHPNYMVGGVPCAINIDGDGAAGAPINMER 257
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
+ + + + L GW + G + + A + + PY+
Sbjct: 258 LNFVEARIKEMIDFNNNVYIPDVLAIGTLYKQAGWLYGGGLSALNVADYGTYEKVPYDHS 317
Query: 241 SEL 243
+
Sbjct: 318 THQ 320
>gi|146279402|ref|YP_001169560.1| hypothetical protein Rsph17025_3375 [Rhodobacter sphaeroides ATCC
17025]
gi|145557643|gb|ABP72255.1| hypothetical protein Rsph17025_3375 [Rhodobacter sphaeroides ATCC
17025]
Length = 596
Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 41/102 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D + + R G + RG E +++ + A + +R+ V
Sbjct: 25 IEGHMRCEVNVDEQGIIRNAVSTGTMWRGLEVILKGRDPRDAWAFTERICGVCTGTHALT 84
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI IP IR + +I H+++
Sbjct: 85 SVRAVEDALGISIPDNANSIRNMMQLNLQIHDHIVHFYHLHA 126
Score = 98.9 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 24/234 (10%), Positives = 54/234 (23%), Gaps = 48/234 (20%)
Query: 207 VKLEDAWGWGFSGVMIR-GSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMME 265
+ +G G + G + P S + + +
Sbjct: 346 FVDHSWYSYGEPGRGLHPWDGRTEPKFELGPNAKGSRTNIQELDEAAKYSWIKAPRWKGH 405
Query: 266 MRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM--------KRSMES-----LI 312
E + R + G + + + + R++E+ L
Sbjct: 406 AMEVGPLARYIIGYAKGHEDIRNQVEGLLRTMDLPVNALFSTLGRTAARALEAEYCCRLQ 465
Query: 313 HHF------------------KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYR 354
HF + + + EAP+G G ++ +
Sbjct: 466 KHFFDKMITNIRNGDSSTANVEKWEPRTWPRECKGVGMTEAPRGALGHWIRIK-DGRIEN 524
Query: 355 CKIRAPGYA---------HLQAMEFLCKGHQLA------DVSAILGSLDIVFGE 393
+ P ++ A E ++ ++ L S D
Sbjct: 525 YQCVVPTTWNGSPRDTAGNIGAFEASLLDTKMERPEEPVEILRTLHSFDPCLAC 578
>gi|126174114|ref|YP_001050263.1| nickel-dependent hydrogenase large subunit [Shewanella baltica
OS155]
gi|125997319|gb|ABN61394.1| nickel-dependent hydrogenase, large subunit [Shewanella baltica
OS155]
Length = 567
Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 42/101 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E+D V L RG E +++ +T + R+ V +
Sbjct: 13 IEGHLRIEVEVDENNVISKAWSSSTLWRGIEVILKGRTPMDVGLIVQRICGVCTYSHYRC 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI+IP+ + +R L + H+++
Sbjct: 73 GTEAVENALGIQIPLNARYLRSLMQTSLYMHDHIVHFYHLH 113
Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats.
Identities = 42/358 (11%), Positives = 72/358 (20%), Gaps = 90/358 (25%)
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
AL+ L E + G H GGV + W +
Sbjct: 189 ALSHYLKALEVQRVAAEMLAIFGGKYPHPQSVVVGGVTSVRDMLSPARLQEWKQKHATVT 248
Query: 185 NDISDLLTGNRIFKQRNVNI------------------------------GTVKLEDAWG 214
+ I + + G + D G
Sbjct: 249 DFILRAYQADIVMAAEAFGTEPSVLGGVNVKNFMATDDFVLANGEYMFNQGVIMNGDLAG 308
Query: 215 WGFSGVMIRGSGAAWDLRKSQ-PYECYSELDFDIPIGKH----------------GDCYD 257
+ + + P Y G +
Sbjct: 309 VSDINPDLIAEDVSHAWYSADAPQHPYDGTTIPNYTGFVERDTVYGKLPTLDGDGKYSWV 368
Query: 258 RYLVRMMEMRESVKIIRQCVNRLLGKNKV----------------------GPVSASDPK 295
+ E E + V+ G V G +A +
Sbjct: 369 KSPRYQGEPVEVGPLACLLVSYARGNKVVVDSVNALLARTGLPVAALFTTLGRTAARMLQ 428
Query: 296 IVPPKRADMKRSMESLIHHFKLYTEGYHV---PVGEVYA--AVEAPKGEFGVYLISDGGN 350
V + +K L + + P E +EAP+G ++
Sbjct: 429 TVIVAQEGLKTFDALLTNIQSDESTYVKPNIDPSKEYIGHAMIEAPRGMLSHWIRIK-NG 487
Query: 351 KPYRCKIRAPGYAH---------LQAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
+ P + + E G +L D V I+ S D
Sbjct: 488 VIENYQAVVPTTWNAGPVDANGKMGPYEASLIGLKLEDPTKPLEVIRIIHSFDPCMAC 545
>gi|141934|gb|AAA16462.1| membrane bound hydrogenase large subunit [Ralstonia eutropha H16]
Length = 618
Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 42/102 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D V R G + RG E +++ + A + +R+ V A
Sbjct: 26 IEGHMRCEVNVDANNVIRNAVSTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGCHALA 85
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE L I IP LIR + ++ ++ H ++
Sbjct: 86 SVRAVENALDIRIPKNAHLIREIMAKTLQVHDHAVHFYHLHA 127
Score = 94.2 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 21/217 (9%), Positives = 47/217 (21%), Gaps = 16/217 (7%)
Query: 192 TGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGK 251
T + G + R A R Y + +
Sbjct: 385 TRIEQIDESAKYSWIKSPRWRGHAMEVGPLSRYILAYAHARSGNKYAERPKEQLEYSAQM 444
Query: 252 HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESL 311
+ L +++ + R L + R+ ++
Sbjct: 445 INSAIPKALGLPETQYTLKQLLPSTIGRTLARALESQYCGEMMHSDWHDLVANIRAGDTA 504
Query: 312 IHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH------- 364
+ + + V AP+G G ++ + + P +
Sbjct: 505 TANVDKWDPATWPLQAKGVGTVAAPRGALGHWIRIK-DGRIENYQCVVPTTWNGSPRDYK 563
Query: 365 --LQAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
+ A E + + + L S D
Sbjct: 564 GQIGAFEASLMNTPVVNPEQPVEILRTLHSFDPCLAC 600
>gi|894097|gb|AAA69668.1| hydrogenase [Rhodobacter capsulatus]
Length = 977
Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 40/102 (39%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + ++ + + G + RG E +++ + A + +R+ V
Sbjct: 386 IEGHMRCEVNVNDQGIITNAVSTGTMWRGLEVILKGRDPRDAWAFTERICGVCTGTHALT 445
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI IP IR + +I H+++
Sbjct: 446 SVRAVESALGITIPDNANSIRNMMQLNLQIHDHIVHFYHLHA 487
Score = 98.9 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 35/132 (26%), Gaps = 16/132 (12%)
Query: 277 VNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAP 336
+ R + K K ++ +S + + + + EAP
Sbjct: 809 LGRTAARALEAEYCCRLQKHFFDKLVTNIKNGDSSTANVEKWDPSTWPKEAKGVGMTEAP 868
Query: 337 KGEFGVYLISDGGNKPYRCKIRAPGYA---------HLQAMEFLCKGHQLA------DVS 381
+G G ++ + + P ++ A E ++ ++
Sbjct: 869 RGALGHWVKIK-DGRIENYQCVVPTTWNGSPRDSKGNIGAFEASLLNTKMERPEEPVEIL 927
Query: 382 AILGSLDIVFGE 393
L S D
Sbjct: 928 RTLHSFDPCLAC 939
>gi|38637670|ref|NP_942644.1| membrane-bound [NiFe] hydrogenase large subunit [Ralstonia eutropha
H16]
gi|57015363|sp|P31891|MBHL_RALEH RecName: Full=Uptake hydrogenase large subunit; AltName:
Full=Hydrogenlyase; AltName: Full=Membrane-bound
hydrogenase large subunit
gi|32527008|gb|AAP85758.1| membrane-bound [NiFe] hydrogenase large subunit [Ralstonia eutropha
H16]
Length = 618
Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 42/102 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D V R G + RG E +++ + A + +R+ V A
Sbjct: 26 IEGHMRCEVNVDANNVIRNAVSTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGCHALA 85
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE L I IP LIR + ++ ++ H ++
Sbjct: 86 SVRAVENALDIRIPKNAHLIREIMAKTLQVHDHAVHFYHLHA 127
Score = 92.7 bits (229), Expect = 8e-17, Method: Composition-based stats.
Identities = 21/217 (9%), Positives = 47/217 (21%), Gaps = 16/217 (7%)
Query: 192 TGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGK 251
T + G + R A R Y + +
Sbjct: 385 TRIEQIDESAKYSWIKSPRWRGHAMEVGPLSRYILAYAHARSGNKYAERPKEQLEYSAQM 444
Query: 252 HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESL 311
+ L +++ + R L + R+ ++
Sbjct: 445 INSAIPKALGLPETQYTLKQLLPSTIGRTLARALESQYCGEMMHSDWHDLVANIRAGDTA 504
Query: 312 IHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH------- 364
+ + + V AP+G G ++ + + P +
Sbjct: 505 TANVDKWDPATWPLQAKGVGTVAAPRGALGHWIRIK-DGRIENYQCVVPTTWNGSPRDYK 563
Query: 365 --LQAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
+ A E + + + L S D
Sbjct: 564 GQIGAFEASLMNTPMVNPEQPVEILRTLHSFDPCLAC 600
>gi|212711150|ref|ZP_03319278.1| hypothetical protein PROVALCAL_02222 [Providencia alcalifaciens DSM
30120]
gi|212686318|gb|EEB45846.1| hypothetical protein PROVALCAL_02222 [Providencia alcalifaciens DSM
30120]
Length = 567
Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ V + G + RG E++++ K A R+ V
Sbjct: 13 IEGHLRIDCEIEDGKVTKA-WASGTMWRGMEEIVKGKDARDAWMIMQRICGVCTTVHGII 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+E L +E+P+ Q IR + I H+++ +
Sbjct: 72 SVRTIESALNLEVPVNAQYIRNMILAAHTIQDHIVHFYQLSA 113
Score = 93.9 bits (232), Expect = 4e-17, Method: Composition-based stats.
Identities = 12/82 (14%), Positives = 21/82 (25%), Gaps = 16/82 (19%)
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLA 378
+ E P+G +++ K + P + E G +A
Sbjct: 470 KGVGFGEVPRGLLSHWVVVK-DGKIENYQAVVPSTWNSGPRNFNDEPGPYEQALVGTTVA 528
Query: 379 D------VSAILGSLDIVFGEV 394
D V + S D
Sbjct: 529 DPSKPLEVVRTIHSFDPCMSCA 550
>gi|332673567|gb|AEE70384.1| quinone-reactive Ni/Fe-hydrogenase [Helicobacter pylori 83]
Length = 578
Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 42/101 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D + V L RG E +I+ + A R+ V + A
Sbjct: 13 IEGHLRIEVIVDDDNVITDAFSSSTLFRGLETIIKGRDPRDAGFIAQRICGVCTYSHYKA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI P+ QL+R L + H+++ T
Sbjct: 73 GITAVENALGITPPLNAQLVRSLMNMALLFHDHVVHFYTLH 113
Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 18/83 (21%)
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQ 376
G V P+G ++ + P + A E G +
Sbjct: 475 KGRYIGQV--PRGMLSHWVRIK-NGVVENYQAVVPSTWNAGPRDSKNQRGAYEMSLIGTK 531
Query: 377 LAD------VSAILGSLDIVFGE 393
+AD + + S D
Sbjct: 532 IADLTQPLEIIRTIHSFDPCIAC 554
>gi|317014052|gb|ADU81488.1| nickel-dependent hydrogenase, large subunit [Helicobacter pylori
Gambia94/24]
Length = 578
Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 42/101 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D + V L RG E +I+ + A R+ V + A
Sbjct: 13 IEGHLRIEVIVDDDNVITDAFSSSTLFRGLETIIKGRDPRDAGFIAQRICGVCTYSHYKA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI P+ QL+R L + H+++ T
Sbjct: 73 GITAVENALGITPPLNAQLVRSLMNMALLFHDHVVHFYTLH 113
Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 18/83 (21%)
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQ 376
G V P+G ++ + P + A E G +
Sbjct: 475 KGRYIGQV--PRGMLSHWVRIK-NGVVENYQAVVPSTWNAGPRDSKNQRGAYEMSLIGTK 531
Query: 377 LAD------VSAILGSLDIVFGE 393
+AD + + S D
Sbjct: 532 IADLTQPLEIIRTIHSFDPCIAC 554
>gi|317012448|gb|ADU83056.1| nickel-dependent hydrogenase, large subunit [Helicobacter pylori
Lithuania75]
Length = 578
Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 42/101 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D + V L RG E +I+ + A R+ V + A
Sbjct: 13 IEGHLRIEVIVDDDNVITDAFSSSTLFRGLETIIKGRDPRDAGFIAQRICGVCTYSHYKA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI P+ QL+R L + H+++ T
Sbjct: 73 GITAVENALGITPPLNAQLVRSLMNMALLFHDHVVHFYTLH 113
Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 18/83 (21%)
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQ 376
G V P+G ++ + P + A E G +
Sbjct: 475 KGRYIGQV--PRGMLSHWVRIK-NGVVENYQAVVPSTWNAGPRDSQNQRGAYEMSLIGTK 531
Query: 377 LAD------VSAILGSLDIVFGE 393
+AD + + S D
Sbjct: 532 IADLTQPLEIIRTIHSFDPCIAC 554
>gi|317009353|gb|ADU79933.1| nickel-dependent hydrogenase, large subunit [Helicobacter pylori
India7]
Length = 578
Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 42/101 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D + V L RG E +I+ + A R+ V + A
Sbjct: 13 IEGHLRIEVIVDDDNVITDAFSSSTLFRGLETIIKGRDPRDAGFIAQRICGVCTYSHYKA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI P+ QL+R L + H+++ T
Sbjct: 73 GITAVENALGITPPLNAQLVRSLMNMALLFHDHVVHFYTLH 113
Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 18/83 (21%)
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQ 376
G V P+G ++ + P + A E G +
Sbjct: 475 KGRYIGQV--PRGMLSHWVRIK-NGVVENYQAVVPSTWNAGPRDSQNQRGAYEMSLIGTK 531
Query: 377 LAD------VSAILGSLDIVFGE 393
+AD + + S D
Sbjct: 532 IADLTQPLEIIRTIHSFDPCIAC 554
>gi|308182793|ref|YP_003926920.1| nickel-dependent hydrogenase, large subunit [Helicobacter pylori
PeCan4]
gi|308064978|gb|ADO06870.1| nickel-dependent hydrogenase, large subunit [Helicobacter pylori
PeCan4]
Length = 578
Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 42/101 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D + V L RG E +I+ + A R+ V + A
Sbjct: 13 IEGHLRIEVIVDDDNVITDAFSSSTLFRGLETIIKGRDPRDAGFIAQRICGVCTYSHYKA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI P+ QL+R L + H+++ T
Sbjct: 73 GITAVENALGITPPLNAQLVRSLMNMALLFHDHVVHFYTLH 113
Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 18/83 (21%)
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQ 376
G V P+G ++ + P + A E G +
Sbjct: 475 KGRYIGQV--PRGMLSHWVRIK-NGVVENYQAVVPSTWNAGPRDSKNQRGAYEMSLIGTK 531
Query: 377 LAD------VSAILGSLDIVFGE 393
+AD + + S D
Sbjct: 532 IADLTQPLEIIRTIHSFDPCIAC 554
>gi|261839540|gb|ACX99305.1| quinone-reactive Ni/Fe hydrogenase HydB [Helicobacter pylori 52]
Length = 578
Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 42/101 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D + V L RG E +I+ + A R+ V + A
Sbjct: 13 IEGHLRIEVIVDDDNVITDAFSSSTLFRGLETIIKGRDPRDAGFIAQRICGVCTYSHYKA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI P+ QL+R L + H+++ T
Sbjct: 73 GITAVENALGITPPLNAQLVRSLMNMALLFHDHVVHFYTLH 113
Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 18/83 (21%)
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQ 376
G V P+G ++ + P + A E G +
Sbjct: 475 KGRYIGQV--PRGMLSHWVRIK-NGVVENYQAVVPSTWNAGPRDSKNQRGAYEMSLIGTK 531
Query: 377 LAD------VSAILGSLDIVFGE 393
+AD + + S D
Sbjct: 532 IADLTQPLEIIRTIHSFDPCIAC 554
>gi|261838127|gb|ACX97893.1| large subunit of hydrogen uptake-like hydrogenase [Helicobacter
pylori 51]
Length = 578
Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 42/101 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D + V L RG E +I+ + A R+ V + A
Sbjct: 13 IEGHLRIEVIVDDDNVITDAFSSSTLFRGLETIIKGRDPRDAGFIAQRICGVCTYSHYKA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI P+ QL+R L + H+++ T
Sbjct: 73 GITAVENALGITPPLNAQLVRSLMNMALLFHDHVVHFYTLH 113
Score = 89.6 bits (221), Expect = 7e-16, Method: Composition-based stats.
Identities = 19/157 (12%), Positives = 38/157 (24%), Gaps = 23/157 (14%)
Query: 257 DRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM-ESLIHHF 315
+ + +K + + L + K + ++ E+L
Sbjct: 401 AKNPYVTEVATKFLKDTKLPLEALFSTLGRTAARCIEAKTIADNGLLAFDALVENLKSDQ 460
Query: 316 KLYTEGYHVP----VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL------ 365
T Y G V P+G ++ + P +
Sbjct: 461 STCTPYYIDKNQEYKGRYIGQV--PRGMLSHWVRIK-NGVVENYQAVVPSTWNAGPRDSK 517
Query: 366 ---QAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
A E G ++AD + + S D
Sbjct: 518 NQRGAYEMSLIGTKIADLTQPLEIIRTIHSFDPCIAC 554
>gi|254779381|ref|YP_003057486.1| Quinone-reactive Ni/Fe-hydrogenase large chain (Membrane-bound
hydrogenase large subunit) (Hydrogen:quinone
oxidoreductase) [Helicobacter pylori B38]
gi|254001292|emb|CAX29269.1| Quinone-reactive Ni/Fe-hydrogenase large chain (Membrane-bound
hydrogenase large subunit) (Hydrogen:quinone
oxidoreductase) [Helicobacter pylori B38]
Length = 578
Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 42/101 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D + V L RG E +I+ + A R+ V + A
Sbjct: 13 IEGHLRIEVIVDDDNVITDAFSSSTLFRGLETIIKGRDPRDAGFIAQRICGVCTYSHYKA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI P+ QL+R L + H+++ T
Sbjct: 73 GITAVENALGITPPLNAQLVRSLMNMALLFHDHVVHFYTLH 113
Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 18/83 (21%)
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQ 376
G V P+G ++ + P + A E G +
Sbjct: 475 KGRYIGQV--PRGMLSHWVRIK-NGVVENYQAVVPSTWNAGPRDSQNQRGAYEMSLIGTK 531
Query: 377 LAD------VSAILGSLDIVFGE 393
+AD + + S D
Sbjct: 532 IADLTQPLEIIRTIHSFDPCIAC 554
>gi|210134838|ref|YP_002301277.1| quinone-reactive Ni/Fe hydrogenase HydB [Helicobacter pylori P12]
gi|210132806|gb|ACJ07797.1| quinone-reactive Ni/Fe hydrogenase HydB [Helicobacter pylori P12]
Length = 578
Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 42/101 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D + V L RG E +I+ + A R+ V + A
Sbjct: 13 IEGHLRIEVIVDDDNVITDAFSSSTLFRGLETIIKGRDPRDAGFIAQRICGVCTYSHYKA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI P+ QL+R L + H+++ T
Sbjct: 73 GITAVENALGITPPLNAQLVRSLMNMALLFHDHVVHFYTLH 113
Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 18/83 (21%)
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQ 376
G V P+G ++ + P + A E G +
Sbjct: 475 KGRYIGQV--PRGMLSHWVRIK-NGVVENYQAVVPSTWNAGPRDSQNQRGAYEMSLIGTK 531
Query: 377 LAD------VSAILGSLDIVFGE 393
+AD + + S D
Sbjct: 532 IADLTQPLEIIRTIHSFDPCIAC 554
>gi|207092934|ref|ZP_03240721.1| quinone-reactive Ni/Fe hydrogenase, large subunit (hydB)
[Helicobacter pylori HPKX_438_AG0C1]
Length = 487
Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 42/101 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D + V L RG E +I+ + A R+ V + A
Sbjct: 13 IEGHLRIEVIVDDDNVITDAFSSSTLFRGLETIIKGRDPRDAGFIAQRICGVCTYSHYKA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI P+ QL+R L + H+++ T
Sbjct: 73 GITAVENALGITPPLNAQLVRSLMNMALLFHDHVVHFYTLH 113
>gi|15645256|ref|NP_207426.1| quinone-reactive Ni/Fe hydrogenase, large subunit (hydB)
[Helicobacter pylori 26695]
gi|2313750|gb|AAD07692.1| quinone-reactive Ni/Fe hydrogenase, large subunit (hydB)
[Helicobacter pylori 26695]
Length = 578
Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 42/101 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D + V L RG E +I+ + A R+ V + A
Sbjct: 13 IEGHLRIEVIVDDDNVITDAFSSSTLFRGLETIIKGRDPRDAGFIAQRICGVCTYSHYKA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI P+ QL+R L + H+++ T
Sbjct: 73 GITAVENALGITPPLNAQLVRSLMNMALLFHDHVVHFYTLH 113
Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 18/83 (21%)
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQ 376
G V P+G ++ + P + A E G +
Sbjct: 475 KGRYIGQV--PRGMLSHWVRIK-NGVVENYQAVVPSTWNAGPRDSQNQRGAYEMSLIGTK 531
Query: 377 LAD------VSAILGSLDIVFGE 393
+AD + + S D
Sbjct: 532 IADLTQPLEIIRTIHSFDPCIAC 554
>gi|261344830|ref|ZP_05972474.1| hydrogenase-2 large chain [Providencia rustigianii DSM 4541]
gi|282567279|gb|EFB72814.1| hydrogenase-2 large chain [Providencia rustigianii DSM 4541]
Length = 567
Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ V + G + RG E++++ K A R+ V
Sbjct: 13 IEGHLRIDCEIEDGKVTKA-WASGTMWRGMEEIVKGKDARDAWMIMQRICGVCTTVHGII 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+E L +E+P+ Q IR + I H+++ +
Sbjct: 72 SVRTIESALNLEVPVNAQYIRNMILAAHTIQDHIVHFYQLSA 113
Score = 94.6 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 12/82 (14%), Positives = 21/82 (25%), Gaps = 16/82 (19%)
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLA 378
+ E P+G +++ K + P + E G +A
Sbjct: 470 KGVGFGEVPRGLLSHWVVVK-DGKIENYQAVVPSTWNSGPRNFNDEPGPYEQALVGTPVA 528
Query: 379 D------VSAILGSLDIVFGEV 394
D V + S D
Sbjct: 529 DPSKPLEVVRTIHSFDPCMSCA 550
>gi|317177536|dbj|BAJ55325.1| quinone-reactive Ni/Fe hydrogenase HydB [Helicobacter pylori F16]
Length = 578
Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 42/101 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D + V L RG E +I+ + A R+ V + A
Sbjct: 13 IEGHLRIEVIVDDDNVITDAFSSSTLFRGLETIIKGRDPRDAGFIAQRICGVCTYSHYKA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI P+ QL+R L + H+++ T
Sbjct: 73 GITAVENALGITPPLNAQLVRSLMNMALLFHDHVVHFYTLH 113
Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 18/83 (21%)
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQ 376
G V P+G ++ + P + A E G +
Sbjct: 475 KGRYIGQV--PRGMLSHWVRIK-NGVVENYQAVVPSTWNAGPRDSKNQRGAYEMSLIGTK 531
Query: 377 LAD------VSAILGSLDIVFGE 393
+AD + + S D
Sbjct: 532 IADLTQPLEIIRTIHSFDPCIAC 554
>gi|308184418|ref|YP_003928551.1| nickel-dependent hydrogenase, large subunit [Helicobacter pylori
SJM180]
gi|308060338|gb|ADO02234.1| nickel-dependent hydrogenase, large subunit [Helicobacter pylori
SJM180]
Length = 578
Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 42/101 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D + V L RG E +I+ + A R+ V + A
Sbjct: 13 IEGHLRIEVIVDDDNVITDAFSSSTLFRGLETIIKGRDPRDAGFIAQRICGVCTYSHYKA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI P+ QL+R L + H+++ T
Sbjct: 73 GITAVENALGITPPLNAQLVRSLMNMALLFHDHVVHFYTLH 113
Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 18/83 (21%)
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQ 376
G V P+G ++ + P + A E G +
Sbjct: 475 KGRYIGQV--PRGMLSHWVRIK-NGVVENYQAVVPSTWNAGPRDSQNQRGAYEMSLIGTK 531
Query: 377 LAD------VSAILGSLDIVFGE 393
+AD + + S D
Sbjct: 532 IADLTQPLEIIRTIHSFDPCIAC 554
>gi|108563040|ref|YP_627356.1| quinone-reactive Ni/Fe hydrogenase HydB [Helicobacter pylori HPAG1]
gi|107836813|gb|ABF84682.1| quinone-reactive Ni/Fe hydrogenase HydB [Helicobacter pylori HPAG1]
Length = 578
Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 42/101 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D + V L RG E +I+ + A R+ V + A
Sbjct: 13 IEGHLRIEVIVDDDNVITDAFSSSTLFRGLETIIKGRDPRDAGFIAQRICGVCTYSHYKA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI P+ QL+R L + H+++ T
Sbjct: 73 GITAVENALGITPPLNAQLVRSLMNMALLFHDHVVHFYTLH 113
Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 18/83 (21%)
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQ 376
G V P+G ++ + P + A E G +
Sbjct: 475 KGRYIGQV--PRGMLSHWVRIK-NGVVENYQAVVPSTWNAGPRDSQNQRGAYEMSLIGTK 531
Query: 377 LAD------VSAILGSLDIVFGE 393
+AD + + S D
Sbjct: 532 IADLTQPLEIIRTIHSFDPCIAC 554
>gi|317010852|gb|ADU84599.1| nickel-dependent hydrogenase, large subunit [Helicobacter pylori
SouthAfrica7]
Length = 578
Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 41/101 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D V L RG E +I+ + A R+ V + A
Sbjct: 13 IEGHLRIEVIVDDNNVITDAFSSSTLFRGLETIIKGRDPRDAGFIAQRICGVCTYSHYKA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI P+ QL+R L + H+++ T
Sbjct: 73 GVTAVENALGITPPLNAQLVRSLMNMALLFHDHVVHFYTLH 113
Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 18/83 (21%)
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQ 376
G V P+G ++ + P + A E G +
Sbjct: 475 KGRYIGQV--PRGMLSHWVRIK-NGVVENYQAVVPSTWNAGPRDSQGQRGAYEMSLIGTK 531
Query: 377 LAD------VSAILGSLDIVFGE 393
+AD + + S D
Sbjct: 532 IADLTQPLEIIRTIHSFDPCIAC 554
>gi|217031996|ref|ZP_03437497.1| hypothetical protein HPB128_187g23 [Helicobacter pylori B128]
gi|298736327|ref|YP_003728853.1| quinone-reactive Ni/Fe hydrogenase large subunit [Helicobacter
pylori B8]
gi|216946306|gb|EEC24912.1| hypothetical protein HPB128_187g23 [Helicobacter pylori B128]
gi|298355517|emb|CBI66389.1| quinone-reactive Ni/Fe hydrogenase, large subunit (HydB)
[Helicobacter pylori B8]
Length = 578
Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 42/101 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D + V L RG E +I+ + A R+ V + A
Sbjct: 13 IEGHLRIEVIVDDDNVITDAFSSSTLFRGLETIIKGRDPRDAGFIAQRICGVCTYSHYKA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI P+ QL+R L + H+++ T
Sbjct: 73 GITAVENALGITPPLNAQLVRSLMNMALLFHDHVVHFYTLH 113
Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 18/83 (21%)
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQ 376
G V P+G ++ + P + A E G +
Sbjct: 475 KGRYIGQV--PRGMLSHWVRIK-NGVVENYQAVVPSTWNAGPRDSQNQRGAYEMSLIGTK 531
Query: 377 LAD------VSAILGSLDIVFGE 393
+AD + + S D
Sbjct: 532 IADLTQPLEIIRTIHSFDPCIAC 554
>gi|217034647|ref|ZP_03440053.1| hypothetical protein HP9810_875g13 [Helicobacter pylori 98-10]
gi|216942895|gb|EEC22384.1| hypothetical protein HP9810_875g13 [Helicobacter pylori 98-10]
Length = 578
Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 42/101 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D + V L RG E +I+ + A R+ V + A
Sbjct: 13 IEGHLRIEVIVDDDNVITDAFSSSTLFRGLETIIKGRDPRDAGFIAQRICGVCTYSHYKA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI P+ QL+R L + H+++ T
Sbjct: 73 GITAVENALGITPPLNAQLVRSLMNMALLFHDHVVHFYTLH 113
Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 18/83 (21%)
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQ 376
G V P+G ++ + P + A E G +
Sbjct: 475 KGRYIGQV--PRGMLSHWVRIK-NGVVENYQAVVPSTWNAGPRDSKNQRGAYEMSLIGTK 531
Query: 377 LAD------VSAILGSLDIVFGE 393
+AD + + S D
Sbjct: 532 IADLTQPLEIIRTIHSFDPCIAC 554
>gi|308063577|gb|ADO05464.1| nickel-dependent hydrogenase, large subunit [Helicobacter pylori
Sat464]
Length = 578
Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 42/101 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D + V L RG E +I+ + A R+ V + A
Sbjct: 13 IEGHLRIEVIVDDDNVITDAFSSSTLFRGLETIIKGRDPRDAGFIAQRICGVCTYSHYKA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI P+ QL+R L + H+++ T
Sbjct: 73 GITAVENALGITPPLNAQLVRSLMNMALLFHDHVVHFYTLH 113
Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 18/83 (21%)
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQ 376
G V P+G ++ + P + A E G +
Sbjct: 475 KGRYIGQV--PRGILSHWVRIK-NGVVENYQAVVPSTWNAGPRDSKNQRGAYEMSLIGTK 531
Query: 377 LAD------VSAILGSLDIVFGE 393
+AD + + S D
Sbjct: 532 IADLTQPLEIIRTIHSFDPCIAC 554
>gi|89902849|ref|YP_525320.1| nickel-dependent hydrogenase large subunit [Rhodoferax
ferrireducens T118]
gi|89347586|gb|ABD71789.1| nickel-dependent hydrogenase, large subunit [Rhodoferax
ferrireducens T118]
Length = 568
Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +++DG V + G + RG E ++ + A R+ V
Sbjct: 13 IEGHLRIDVDIDGGKVNKA-WSSGQMWRGVELILLGRDPRDAWAITQRICGVCTTVHAIT 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE L +EIP+ Q IR L + +++ +
Sbjct: 72 SVRAVENALKMEIPLNAQYIRNLIILAHSVHDSIVHFYHLSA 113
Score = 101 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/404 (9%), Positives = 79/404 (19%), Gaps = 102/404 (25%)
Query: 91 EIPIRGQLIRV---LYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERAS 147
+ R Q L H + +++ A+ L E + K
Sbjct: 150 RVHERLQHFVNGGQLGIFTNGYWGHPAMKLSPEVNLLAVAHYLQALEVQRKANKIVSILG 209
Query: 148 GSRMHAAYFRPGGVHQD-IPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGT 206
H GGV + +++++D N
Sbjct: 210 SKTPHIQNVAVGGVANPLATDSQAVLTVERLMAIKGWIDELAD-FVKNVYLIDVAAVGAF 268
Query: 207 VKLEDAWGWGFSG------------------VMIRGSGAAWDLRKS-------------- 234
A G G + G RK
Sbjct: 269 YPEWTAIGKGVTNYLSVPDIPLDAKGTQFAFPGGFIEGGDLAKRKPISSFNDEYWIKGVE 328
Query: 235 ----------------QPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIR---- 274
PY+ + ++ + + ++ + + R
Sbjct: 329 ESVKHSWYNYDKAGALHPYKGETTPNYTDFKDDAKYSWMKSPTFYGKVAQVGPLARVLNG 388
Query: 275 ---------------------QCVNRLLGKNKVGPVSASDPKIVPPK------RADMKRS 307
++ + + +
Sbjct: 389 LAAGHEATTKYATATLDTVSALAKTKIGLDAMHSTIGRHAARAISCCVNVDLLADQWTAL 448
Query: 308 MESLIHHFKLYTEGYHVPVGE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
+ ++ P GE EAP+G +++ D K + P +
Sbjct: 449 LTNMGKGDLATFNKPVFPKGEVMGVGFHEAPRGALSHWVVID-NGKIKNYQCVVPSTWNA 507
Query: 366 ---------QAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
E +AD V + S D
Sbjct: 508 CPRNEKDEPGPYEASLLHTPIADPEKPLEVLRTIHSFDPCIACA 551
>gi|289812547|ref|ZP_06543176.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Typhi str. AG3]
Length = 143
Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 42/104 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D + V G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNIDEQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
A+E +GI++P +IR + HL++ A
Sbjct: 87 SVYAIEDAIGIQVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130
>gi|308061962|gb|ADO03850.1| nickel-dependent hydrogenase, large subunit [Helicobacter pylori
Cuz20]
Length = 578
Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 42/101 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D + V L RG E +I+ + A R+ V + A
Sbjct: 13 IEGHLRIEVIVDDDNVITDAFSSSTLFRGLETIIKGRDPRDAGFIAQRICGVCTYSHYKA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI P+ QL+R L + H+++ T
Sbjct: 73 GITAVENALGITPPLNAQLVRSLMNMALLFHDHVVHFYTLH 113
Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 18/83 (21%)
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQ 376
G V P+G ++ + P + A E G +
Sbjct: 475 KGRYIGQV--PRGMLSHWVRIK-NGVVENYQAVVPSTWNAGPRDSKNQRGAYEMSLIGTK 531
Query: 377 LAD------VSAILGSLDIVFGE 393
+AD + + S D
Sbjct: 532 IADLTQPLEIIRTIHSFDPCIAC 554
>gi|188527519|ref|YP_001910206.1| quinone-reactive Ni/Fe hydrogenase HydB [Helicobacter pylori
Shi470]
gi|188143759|gb|ACD48176.1| quinone-reactive Ni/Fe hydrogenase HydB [Helicobacter pylori
Shi470]
Length = 578
Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 42/101 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D + V L RG E +I+ + A R+ V + A
Sbjct: 13 IEGHLRIEVIVDDDNVITDAFSSSTLFRGLETIIKGRDPRDAGFIAQRICGVCTYSHYKA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI P+ QL+R L + H+++ T
Sbjct: 73 GITAVENALGITPPLNAQLVRSLMNMALLFHDHVVHFYTLH 113
Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 18/83 (21%)
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQ 376
G V P+G ++ + P + A E G +
Sbjct: 475 KGRYIGQV--PRGMLSHWVRIK-NGVVENYQAVVPSTWNAGPRDSKNQRGAYEMSLIGTK 531
Query: 377 LAD------VSAILGSLDIVFGE 393
+AD + + S D
Sbjct: 532 IADLTQPLEIIRTIHSFDPCIAC 554
>gi|317181946|dbj|BAJ59730.1| quinone-reactive Ni/Fe hydrogenase HydB [Helicobacter pylori F57]
Length = 578
Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 42/101 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D + V L RG E +I+ + A R+ V + A
Sbjct: 13 IEGHLRIEVIVDDDNVITDAFSSSTLFRGLETIIKGRDPRDAGFIAQRICGVCTYSHYKA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI P+ QL+R L + H+++ T
Sbjct: 73 GITAVENALGITPPLNAQLVRSLMNMALLFHDHVVHFYTLH 113
Score = 88.5 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 18/83 (21%)
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQ 376
G V P+G ++ + P + A E G +
Sbjct: 475 KGRYIGQV--PRGMLSHWVRIK-NGVVENYQAVVPSTWNAGPRDSKNQRGAYEMSLIGTK 531
Query: 377 LAD------VSAILGSLDIVFGE 393
+AD + + S D
Sbjct: 532 IADLTQPLEIIRTIHSFDPCIAC 554
>gi|315586687|gb|ADU41068.1| quinone-reactive Ni/Fe hydrogenase HydB [Helicobacter pylori 35A]
Length = 578
Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 42/101 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D + V L RG E +I+ + A R+ V + A
Sbjct: 13 IEGHLRIEVIVDDDNVITDAFSSSTLFRGLETIIKGRDPRDAGFIAQRICGVCTYSHYKA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI P+ QL+R L + H+++ T
Sbjct: 73 GITAVENALGITPPLNAQLVRSLMNMALLFHDHVVHFYTLH 113
Score = 88.5 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 18/83 (21%)
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQ 376
G V P+G ++ + P + A E G +
Sbjct: 475 KGRYIGQV--PRGMLSHWVRIK-NGVVENYQAVVPSTWNAGPRDSKNQRGAYEMSLIGTK 531
Query: 377 LAD------VSAILGSLDIVFGE 393
+AD + + S D
Sbjct: 532 IADLTQPLEIIRTIHSFDPCIAC 554
>gi|317180405|dbj|BAJ58191.1| quinone-reactive Ni/Fe hydrogenase HydB [Helicobacter pylori F32]
Length = 578
Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 42/101 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D + V L RG E +I+ + A R+ V + A
Sbjct: 13 IEGHLRIEVIVDDDNVITDAFSSSTLFRGLETIIKGRDPRDAGFIAQRICGVCTYSHYKA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI P+ QL+R L + H+++ T
Sbjct: 73 GITAVENALGITPPLNAQLVRSLMNMALLFHDHVVHFYTLH 113
Score = 88.5 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 18/83 (21%)
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQ 376
G V P+G ++ + P + A E G +
Sbjct: 475 KGRYIGQV--PRGMLSHWVRIK-NGVVENYQAVVPSTWNAGPRDSKNQRGAYEMSLIGTK 531
Query: 377 LAD------VSAILGSLDIVFGE 393
+AD + + S D
Sbjct: 532 IADLTQPLEIIRTIHSFDPCIAC 554
>gi|127512692|ref|YP_001093889.1| nickel-dependent hydrogenase, large subunit [Shewanella loihica
PV-4]
gi|126637987|gb|ABO23630.1| nickel-dependent hydrogenase, large subunit [Shewanella loihica
PV-4]
Length = 568
Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 43/101 (42%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E+D V + L RG E +++ +T + R+ V +
Sbjct: 13 IEGHLRIEVEVDENNVVQKAWSSSTLWRGIEVILKGRTPMDVGLIVQRICGVCTYSHYRC 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LG++IP+ + +R L + H+++
Sbjct: 73 GTEAVENALGVKIPLNAKYLRSLMQTSLYMHDHIVHFYHLH 113
Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats.
Identities = 39/358 (10%), Positives = 71/358 (19%), Gaps = 90/358 (25%)
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
AL+ L E + G + H GGV + W
Sbjct: 189 ALSHYLKALEVQRVAAEMLAIFGGKQPHPQSLVVGGVTSVRDMLSPARLQEWKQKHAIVA 248
Query: 185 NDISDLLTGNRIFKQRNVNI------------------------------GTVKLEDAWG 214
+ I+ + + G + D
Sbjct: 249 DFINRAYKADIVMAAEAFGGEPSVLGGVNVKNFLATNDFVLADGQYMFDQGVIMNGDLAN 308
Query: 215 WGFSGVMIRGSGAAWDLRK----SQPYECYSELDFDIPI-------------GKHGDCYD 257
+ + PYE + ++ + G +
Sbjct: 309 VTDINPDLIKEDVSHAWYDASEPQHPYEGTTIPNYTGFVERDTVYGKLPTLDGDGKYSWV 368
Query: 258 RYLVRMMEMRESVKIIRQCVNRLLGKNKVGP-------------------------VSAS 292
+ E E + V+ G V
Sbjct: 369 KSPRYQGEPVEVGPLSSLLVSYARGNKVVVEAVNGLLEATGLPVEALFTTLGRTAARMLQ 428
Query: 293 DPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYA--AVEAPKGEFGVYLISDGGN 350
+ + +L+ Y + P E +EAP+G ++
Sbjct: 429 TVIVAEQGLKTFDALINNLLVDEATYVKPEIDPSKEYVGHAMIEAPRGMLSHWIRIK-NG 487
Query: 351 KPYRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
+ P + E G +L D V I+ S D
Sbjct: 488 LVENYQAVVPTTWNAGPVDAAGKVGPYEASLLGLKLEDPTKPLEVIRIIHSFDPCMAC 545
>gi|319940471|ref|ZP_08014816.1| hydrogenase large subunit [Sutterella wadsworthensis 3_1_45B]
gi|319806097|gb|EFW02846.1| hydrogenase large subunit [Sutterella wadsworthensis 3_1_45B]
Length = 587
Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats.
Identities = 25/241 (10%), Positives = 49/241 (20%), Gaps = 34/241 (14%)
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ + +K + G + + G P YS +
Sbjct: 332 EQVQEFVDHSWYKYPEADKGLHPWDGITDQHYELPPG-SDGTETKFNWLAPDGKYSWIKS 390
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSAS---DPKIVPPKRA 302
G + + + + + L N + S +
Sbjct: 391 PRWRGHMMEVGPLARMVIGIAKNVPHYKEPALELLKELNLPLEAAFSTLGRHAARALECE 450
Query: 303 DMKRSMESLIHHF--------------KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG 348
M + I + + EAP+G Y +
Sbjct: 451 WMTHKLAQYIDDLTANIKAGDETAANMEFWEPKTWPKECRGVGPCEAPRGALAHYCVIK- 509
Query: 349 GNKPYRCKIRAPGYAHLQA---------MEFLCKGHQLAD------VSAILGSLDIVFGE 393
+ + P + E G LAD + + S D
Sbjct: 510 NGRLENWQAVVPTTWNASPRSSEGQKGTYELSLIGTPLADPKRPLEIIRTIHSFDPCLAC 569
Query: 394 V 394
Sbjct: 570 A 570
Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 20 AHGVLRLILEL-DGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G LR+ L D + G + RG E +++ + A + +R+ V
Sbjct: 14 IEGHLRVQAVLGDDGKIVDS-MSTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGIHAL 72
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+ AVE +GI+IP LIR + + I H+++ +
Sbjct: 73 SAVRAVEDAIGIKIPKNANLIRNILNATLYIHDHIVHFYQLSA 115
>gi|330317520|gb|AEC11101.1| Ni/Fe hydrogenase large subunit [bacterium enrichment culture clone
Dhc_hupL-1]
gi|330317526|gb|AEC11104.1| Ni/Fe hydrogenase large subunit [bacterium enrichment culture clone
Dhc_hupL-4]
Length = 230
Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L++ +DG V+ +G L RG E ++ + AV R+ V P +
Sbjct: 11 IEGHLKIEATVDGGEVKDAKC-VGTLFRGFEIFMKDRDPRDAVHITQRICGVCPTSHGTT 69
Query: 80 YALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
AL ++ G+ +IP G+++R L I SH+++ A
Sbjct: 70 AALNLDAAFGVADKIPNNGRILRNLIQGANYIASHIVHFYHLAALDY 116
>gi|208434553|ref|YP_002266219.1| quinone-reactive Ni/Fe hydrogenase [Helicobacter pylori G27]
gi|208432482|gb|ACI27353.1| quinone-reactive Ni/Fe hydrogenase [Helicobacter pylori G27]
Length = 578
Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 42/101 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D + V L RG E +I+ + A R+ V + A
Sbjct: 13 IEGHLRIEVIVDDDNVITDAFSSSTLFRGLETIIKGRDPRDAGFIAQRICGVCTYSHYKA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI P+ QL+R L + H+++ T
Sbjct: 73 GITAVENALGITPPLNAQLVRSLMNMALLFHDHVVHFYTLH 113
Score = 88.5 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 18/83 (21%)
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQ 376
G V P+G ++ + P + A E G +
Sbjct: 475 KGRYIGQV--PRGMLSHWVRIK-NGVVENYQAVVPSTWNAGPRDSQNQRGAYEMSLIGTK 531
Query: 377 LAD------VSAILGSLDIVFGE 393
+AD + + S D
Sbjct: 532 IADLTQPLEIIRTIHSFDPCIAC 554
>gi|317179004|dbj|BAJ56792.1| quinone-reactive Ni/Fe hydrogenase HydB [Helicobacter pylori F30]
Length = 578
Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 42/101 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D + V L RG E +I+ + A R+ V + A
Sbjct: 13 IEGHLRIEVIVDDDNVITDAFSSSTLFRGLETIIKGRDPRDAGFIAQRICGVCTYSHYKA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI P+ QL+R L + H+++ T
Sbjct: 73 GITAVENALGITPPLNAQLVRSLMNMALLFHDHVVHFYTLH 113
Score = 88.5 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 18/83 (21%)
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQ 376
G V P+G ++ + P + A E G +
Sbjct: 475 KGRYIGQV--PRGMLSHWVRIK-NGVVENYQAVVPSTWNAGPRDSKNQRGAYEMSLIGTK 531
Query: 377 LAD------VSAILGSLDIVFGE 393
+AD + + S D
Sbjct: 532 IADLTQPLEIIRTIHSFDPCIAC 554
>gi|1498175|dbj|BAA13223.1| membrane-bound hydrogenase large subunit precursor [Pseudomonas
hydrogenovora]
Length = 622
Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 42/102 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + LD V R G + RG E +++ + A + R+ V A
Sbjct: 26 IEGHMRCEVNLDSNNVIRNAVSTGTMWRGLEVILKGRDPRDAWAFVGRICGVCTGCHALA 85
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI +P LIR + ++ ++ H ++
Sbjct: 86 SVRAVEDALGISVPKNAYLIRSIMAKTLQVHDHAVHFYHLHA 127
Score = 69.2 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 9/93 (9%), Positives = 22/93 (23%), Gaps = 16/93 (17%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQ 366
+ + V P+ G+++ + + P + +
Sbjct: 513 DKWDPSTCPNEAKGVGVVTTPRDALGLWIHIKDD-RIENYQCVMPTTWNDSPRDPIGQIG 571
Query: 367 AMEFLCKGHQLAD------VSAILGSLDIVFGE 393
A E + + + L S D
Sbjct: 572 AFEASLLNTPMVNPEQPVEILRTLHSFDPCLAC 604
>gi|329564794|dbj|BAK19334.1| membrane-bound hydrogenase large subunit precursor [Hydrogenovibrio
marinus]
Length = 611
Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 43/102 (42%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D V + G + RG E ++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNVDENNVIQNAVSTGTMWRGLEVILRGRDPRDAWAFVERICGVCTGCHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE L I+IP LIR + ++ +I H+++
Sbjct: 87 SVRAVEDALDIKIPHNATLIREIMAKTLQIHDHIVHFYHLHA 128
Score = 93.5 bits (231), Expect = 6e-17, Method: Composition-based stats.
Identities = 46/396 (11%), Positives = 88/396 (22%), Gaps = 124/396 (31%)
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVED---IGCWC 177
D+ A+T L + +++++ + G H Y G + I
Sbjct: 199 ADLMAVTHYLEALDFQKEIVKIHAIFGGKNPHPNYMVGGVPCAINIDGDMAAGAPINMER 258
Query: 178 DSFPSALNDISDLLTGNRI---------FKQRNVNIGTVKLEDAWGWGF---------SG 219
+F +L + N F + + G + + +G +
Sbjct: 259 LNFVKSLIEQGRTFNTNVYVPDVIAIAAFYRDWLYGGGLSATNVMDYGAYPKTPYDKSTD 318
Query: 220 VMIRGSGAAWDLRKSQP--------------YECYSELDFDIPIGKH------------- 252
+ G+ D K P + Y D +
Sbjct: 319 QLPGGAIINGDWGKIHPVDPRDPEQVQEFVTHSWYKYPDETKGLHPWDGITEPNYELGSK 378
Query: 253 ---------------GDCYDRYLVRMMEMRESVKIIRQCVNR--------------LLGK 283
+ + E + R + L
Sbjct: 379 TKGSRTNIIEIDESAKYSWIKSPRWRGHAVEVGPLARYILAYAQGVEYVKTQVHTSLNRF 438
Query: 284 NKVGPVSASDPKIVPPKRA---------------------DMKRSMESLIHHFK------ 316
N V + + K + +A M LI + K
Sbjct: 439 NAVCRLLDPNHKDITDLKAFLGSTIGRTLARALESEYCGDMMLDDFNQLISNIKNGDSST 498
Query: 317 ----LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA--------- 363
+ + V AP+G +++ K + P
Sbjct: 499 ANTDKWDPSSWPEHAKGVGTVAAPRGALAHWIVI-EKGKIKNYQCVVPTTWNGSPRDPKG 557
Query: 364 HLQAMEFLCKGHQL--AD----VSAILGSLDIVFGE 393
++ A E G + D V L S D
Sbjct: 558 NIGAFEASLMGTPMERPDEPVEVLRTLHSFDPCLAC 593
>gi|297379832|gb|ADI34719.1| Uptake hydrogenase large subunit [Helicobacter pylori v225d]
Length = 578
Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 42/101 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D + V L RG E +I+ + A R+ V + A
Sbjct: 13 IEGHLRIEVIVDDDNVITDAFSSSTLFRGLETIIKGRDPRDAGFIAQRICGVCTYSHYKA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI P+ QL+R L + H+++ T
Sbjct: 73 GITAVENALGITPPLNAQLVRSLMNMALLFHDHVVHFYTLH 113
Score = 88.5 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 18/83 (21%)
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQ 376
G V P+G ++ + P + A E G +
Sbjct: 475 KGRYIGQV--PRGMLSHWVRIK-NGVVENYQAVVPSTWNAGPRDSKNQRGAYEMSLIGTK 531
Query: 377 LAD------VSAILGSLDIVFGE 393
+AD + + S D
Sbjct: 532 IADLTQPLEIIRTIHSFDPCIAC 554
>gi|109947313|ref|YP_664541.1| hydrogenase large chain [Helicobacter acinonychis str. Sheeba]
gi|109714534|emb|CAJ99542.1| hydrogenase large chain [Helicobacter acinonychis str. Sheeba]
Length = 578
Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 41/101 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D V L RG E +I+ + A R+ V + A
Sbjct: 13 IEGHLRIEVIVDDNNVITDAFSSSTLFRGLETIIKGRDPRDAGFIAQRICGVCTYSHYKA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI P+ QL+R L + H+++ T
Sbjct: 73 GVTAVENALGITPPLNAQLVRSLMNMALLFHDHVVHFYTLH 113
Score = 88.5 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 40/368 (10%), Positives = 75/368 (20%), Gaps = 103/368 (27%)
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF----- 180
L+ L E + + + H GGV + + W F
Sbjct: 190 LSHYLKLLEIQREAAKMTAIFGAKQPHPQSLTVGGVTSVMDILDPTRLAEWKSKFEVVAH 249
Query: 181 PSALNDISDLLTGNRIFKQRN---VNIGTVKLEDAW--------GWGFSGVMIRGSG--- 226
DL+ +F G SGV++ G
Sbjct: 250 FINHAYYPDLVMAGEMFANEQSVIKGCGLKNFIAYEEVLLGRDKYLLSSGVVLDGDISKL 309
Query: 227 -------------AAWDLRKS------QPYECYSELDF------------------DIPI 249
+W + PY+ + + +
Sbjct: 310 HPINESLIKEEVTHSWYQYEDTKEVQLHPYDGQTNPHYTGFKDGESVGIENKMIPTKVLD 369
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM- 308
K+ + + E + V + V+ K + ++
Sbjct: 370 TKNKYSWIKSPRYDNMPMEVGPLSAVVVGLAAKNPYITEVATKFLKDTKLPLEALFSTLG 429
Query: 309 ------------------------ESLIHHFKLYTEGYHVP----VGEVYAAVEAPKGEF 340
E+L T G V P+G
Sbjct: 430 RTAARCIEAKTIADNGLLAFDALVENLKSDQSTCTPYEIDKNQEYKGRYIGQV--PRGML 487
Query: 341 GVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VSAILG 385
++ + P + A E G ++AD + +
Sbjct: 488 SHWVRIK-NGVVENYQAVVPSTWNAGPRDSQGQRGAYEMSLIGTRIADLTQPLEIIRTIH 546
Query: 386 SLDIVFGE 393
S D
Sbjct: 547 SFDPCIAC 554
>gi|330317522|gb|AEC11102.1| Ni/Fe hydrogenase large subunit [bacterium enrichment culture clone
Dhc_hupL-2]
Length = 230
Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L++ +DG V+ +G L RG E ++ + AV R+ V P +
Sbjct: 11 IEGHLKIEATVDGGEVKDAKC-VGTLFRGFEIFMKDRDPRDAVHITQRICGVCPTSHGTT 69
Query: 80 YALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
AL ++ G+ +IP G+++R L I SH+++ A
Sbjct: 70 AALNLDAAFGVADKIPNNGRILRNLIQGANYIASHIVHFYHLAALDY 116
>gi|226947048|ref|YP_002802121.1| membrane bound nickel-dependent hydrogenase, large subunit, HoxG
[Azotobacter vinelandii DJ]
gi|123743|sp|P21949|MBHL_AZOVI RecName: Full=Uptake hydrogenase large subunit; AltName:
Full=Hydrogenase subunit alpha; AltName:
Full=Hydrogenlyase; AltName: Full=Membrane-bound
hydrogenase large subunit
gi|142312|gb|AAA82506.1| H2 uptake hydrogenase (hoxG) [Azotobacter vinelandii]
gi|397998|gb|AAA19499.1| NiFe-hydrogenase subunit [Azotobacter vinelandii]
gi|226721975|gb|ACO81146.1| Membrane bound nickel-dependent hydrogenase, large subunit, HoxG
[Azotobacter vinelandii DJ]
Length = 602
Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats.
Identities = 42/389 (10%), Positives = 83/389 (21%), Gaps = 117/389 (30%)
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL----------- 169
D+ A+ L + ++ ++ + G H Y G ++
Sbjct: 197 ADLMAVAHYLEALDLQKDIVKIHTIFGGKNPHPNYMVGGVACAINLDDVGAAGAPVNMTS 256
Query: 170 VEDIGCWCDSFPSALNDIS--DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGS-- 225
+ + ++ D+L I+K G F+ V S
Sbjct: 257 LNFVLERIHEAREFTRNVYLPDVLAVAGIYKDWLYGGGLAAHNLLSYGTFTKVPYDKSSD 316
Query: 226 --------GAAWDLRKS---------------------------QPYECYSELDFD---- 246
G WD P++ +E F+
Sbjct: 317 LLPAGAIVGGNWDEVLPVDVRDPEEIQEFVSHSWYSYADETKGLHPWDGVTEPKFELGPN 376
Query: 247 ---------IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSAS----- 292
H + + E + R + G+ V
Sbjct: 377 TKGSRTHIQEIDEAHKYSWIKAPRWRGHAMEVGPLARYIIAYASGREYVKEQVDRSLAAF 436
Query: 293 -----------------------DPKIVPPKRADMKRSMESLIHHFK----------LYT 319
M ++L+ + K +
Sbjct: 437 NQSTGLNLGLKQFLPSTLGRTLARALECELAVDSMLDDWQALVGNIKAGDRATANVEKWD 496
Query: 320 EGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA---------HLQAMEF 370
+ EAP+G G ++ K + P ++ A E
Sbjct: 497 PSTWPKEAKGVGINEAPRGALGHWIRIK-DGKIENYQAIVPTTWNGTPRDHLGNIGAYEA 555
Query: 371 LCKGHQL--AD----VSAILGSLDIVFGE 393
++ D + L S D
Sbjct: 556 ALLNTRMERPDEPVEILRTLHSFDPCLAC 584
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 40/102 (39%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D V G + RG E +++ + A + +R+ V
Sbjct: 25 IEGHMRCEVNVDASNVITNAVSTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGTHALT 84
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE L I IP LIR L + ++ H+++
Sbjct: 85 SVRAVEDALDIRIPYNAHLIRNLMDKTLQVHDHIVHFYHLHA 126
>gi|152993248|ref|YP_001358969.1| Ni-Fe hydrogenase, large subunit [Sulfurovum sp. NBC37-1]
gi|151425109|dbj|BAF72612.1| Ni-Fe hydrogenase, large subunit [Sulfurovum sp. NBC37-1]
Length = 624
Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats.
Identities = 37/375 (9%), Positives = 73/375 (19%), Gaps = 114/375 (30%)
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
L + + + G H GGV + I + + I
Sbjct: 234 HYLKALDIQRDMAKMQAIFGGKNPHPQSIVVGGVTCVQDIKNPARIALFKQLLQESNEFI 293
Query: 188 SDLLTGN---------------------------------RIFKQRNVNIGTVKLEDAWG 214
+ R + G E +
Sbjct: 294 KGAYLPDIYMAGTMYADEATDKDATLKGVGGTGGGILSYMSYGDFRLDDTGFYNSEMLFP 353
Query: 215 WGF--SGVMIRGSGAA-----------WDLRKSQPYECYSELDFDIPIG----------- 250
G G + + W P Y G
Sbjct: 354 SGLVLDGDISKALDVDPNKITEDVTHSWYEGTGAPEHPYEGTTIPKYTGLEKKADGYSYL 413
Query: 251 --KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR------- 301
+ + + + + E + R + + G ++ + K
Sbjct: 414 KTEEKYSWIKSPLYDGKKVEVGPLARMVIGYVKGDKRITKYVGNFLKRANLPVTVLFSTV 473
Query: 302 --------------ADMKRSMESL-------------IHHFKLYTEGYHVPVGEVYAAVE 334
M ++ L F + E
Sbjct: 474 GRTAARAIETELMGDVMMEWVDELAKNAASGDLSTWTEFDFDKVSVDTK-----GMGLAE 528
Query: 335 APKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLAD------ 379
AP+G G ++ K + P + + A E G ++A+
Sbjct: 529 APRGSLGHWVKVK-NGKVENYQAVVPSTWNAGPRGPKGEIGAYEGSLIGTKVANPEEPLE 587
Query: 380 VSAILGSLDIVFGEV 394
+ + S D
Sbjct: 588 IIRTIHSFDPCIACA 602
Score = 96.9 bits (240), Expect = 5e-18, Method: Composition-based stats.
Identities = 20/106 (18%), Positives = 34/106 (32%), Gaps = 2/106 (1%)
Query: 20 AHGVLRLILELD-GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G LR+ +D + + RG E +++ + R+ V
Sbjct: 51 IEGHLRIEAIIDENNKIVDA-WSSSTMFRGIETILKGRDPRDCGLMAMRICGVCTGTHYQ 109
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
AVE I IP +L+R L + HL++
Sbjct: 110 RSIEAVEDAFKITIPKNARLVRNLIQGALYVHDHLVHFYHLHALDF 155
>gi|323499424|ref|ZP_08104397.1| hydrogenase 2 large subunit [Vibrio sinaloensis DSM 21326]
gi|323315516|gb|EGA68554.1| hydrogenase 2 large subunit [Vibrio sinaloensis DSM 21326]
Length = 160
Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ +V + G + RG E++++ + A R+ V
Sbjct: 10 IEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHAIP 68
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A E L I++P+ Q IR + H+++ +
Sbjct: 69 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 110
>gi|58042473|gb|AAW63676.1| NADH dehydrogenase subunit 7 [Laurus nobilis]
Length = 80
Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats.
Identities = 48/79 (60%), Positives = 59/79 (74%)
Query: 312 IHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFL 371
IHHF+ YTEG+ VP Y AVEAPKGEFGV+L+S+G N+PYR KIRAPG AH Q ++ +
Sbjct: 2 IHHFEPYTEGFSVPAPSTYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSM 61
Query: 372 CKGHQLADVSAILGSLDIV 390
K H ADV I+G+ DIV
Sbjct: 62 SKHHMPADVVTIIGTQDIV 80
>gi|330317524|gb|AEC11103.1| Ni/Fe hydrogenase large subunit [bacterium enrichment culture clone
Dhc_hupL-3]
Length = 230
Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L++ +DG V+ +G L RG E ++ + AV R+ V P +
Sbjct: 11 IEGHLKIEATVDGGEVKDAKC-VGTLFRGFEIFMKDRDPRDAVHITQRICGVCPTSHGTT 69
Query: 80 YALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
AL ++ G+ +IP G+++R L I SH+++ A
Sbjct: 70 AALNLDAAFGVADKIPNNGRILRNLIQGANYIASHIVHFYHLAALDY 116
>gi|238753087|ref|ZP_04614539.1| Hydrogenase-2 large chain [Yersinia rohdei ATCC 43380]
gi|238708698|gb|EEQ00964.1| Hydrogenase-2 large chain [Yersinia rohdei ATCC 43380]
Length = 548
Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
Query: 24 LRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALA 83
+R+ E++ V + G + RG E++++ A R+ V A A
Sbjct: 1 MRIDCEIENGKVIKA-WSSGTMWRGMEEILQGNDPRDAWMIVQRICGVCTTIHAIASVRA 59
Query: 84 VEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
VE LG+E+P+ Q IR L I H+++ +
Sbjct: 60 VENALGMEVPVNAQHIRNLILAAHSIHDHIVHFYQLSA 97
Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats.
Identities = 37/387 (9%), Positives = 75/387 (19%), Gaps = 93/387 (24%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYF--- 156
L H +++ A+ L E + G H
Sbjct: 146 GQLGIFANGYWGHPAMALPPEVNLIAVAHYLQALECQRDANRIVAVLGGKTPHIQNLAVG 205
Query: 157 -RPGGVHQDIP-----------PELVEDIGCWCDSFPSALNDIS--------------DL 190
++ D+P ++ +G + + + D
Sbjct: 206 GVANPINLDMPSVLNLERLMLVKSFIDRLGSFIEQVYKVDTAVIAAHYPGWLNLGKGADY 265
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIR-----------GSGAAWDLRKSQPYEC 239
+ G + SG + +P
Sbjct: 266 YLSVPELPIDRKGETFLLPGGYLANGTFRPIANHNDPYLIKGIAESGKHAWYQDDEPLAP 325
Query: 240 YSELDFDIPIGKHGD---CYDRYLVRMMEMRESVKIIRQCVNRLLGKNK----------- 285
+ G D + + + E + G
Sbjct: 326 WEGKTNPKYTGWQEDGKYSWVKAPTFYGKTVEVGPLAWLMCGMAAGHAPTKQHFSDIGAA 385
Query: 286 -----------------VGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV-- 326
+G + ++ + + E + P
Sbjct: 386 YQQLSGQAITAEQLPSTLGRIIGRAVHCCVLHETLAQQWSALVTNIGTGDVETFIKPDIP 445
Query: 327 --GE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCK 373
GE EAP+G +++ K + P + E
Sbjct: 446 LTGEIRGVGFEEAPRGMLSHWVVIK-DGKIANYQAVVPSTWNAGPRNFNDEPGPYEQALV 504
Query: 374 GHQLAD------VSAILGSLDIVFGEV 394
G +AD V + S D
Sbjct: 505 GTPVADPAKPLEVVRTIHSFDPCMSCA 531
>gi|163783187|ref|ZP_02178181.1| hydrogenase large subunit [Hydrogenivirga sp. 128-5-R1-1]
gi|159881521|gb|EDP75031.1| hydrogenase large subunit [Hydrogenivirga sp. 128-5-R1-1]
Length = 564
Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E+ ++++ G + RG E ++ + +A R+ V A
Sbjct: 12 IEGHLRIEAEVKDGVIQKA-YSSGTMVRGIEIILRGRDPREAWALAQRICGVCTTVHAFA 70
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI +P LIR L + H+++
Sbjct: 71 SIRAVEDALGINVPENASLIRKLMIGTLFVHDHVVHFYHLHA 112
Score = 95.8 bits (237), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/238 (11%), Positives = 65/238 (27%), Gaps = 30/238 (12%)
Query: 184 LNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243
++ + +T + + E ++G D K +
Sbjct: 316 YKEVKEYVTHSWYKYSVGDDKPLHPWEGETELSYTGPEPPYDYLNVD-EKYSWLKAPRYK 374
Query: 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN------------RLLGKNKVGPVSA 291
+ +G Y + +RE V I+ + ++ L + +
Sbjct: 375 GLPVEVGPLSRVLAMYARDIYGVREEVGIVLKGLDLPLKALFSTLGRTLARGLETKVYAN 434
Query: 292 SDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNK 351
+ + ++K+ + + K + + +EAP+G ++ K
Sbjct: 435 AMREWYAKLLENVKKGDYEVFNPEK-WEPSTWESKAKGLGLMEAPRGSLSHWVHIK-DGK 492
Query: 352 PYRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
+ P + A E GH+L + + + S D
Sbjct: 493 IENYQAVVPTTWNASPRDAKGQPSAYEASLVGHELNNPKEPLEILRTIHSFDPCLACA 550
>gi|157375046|ref|YP_001473646.1| nickel-dependent hydrogenase, large subunit [Shewanella sediminis
HAW-EB3]
gi|157317420|gb|ABV36518.1| nickel-dependent hydrogenase, large subunit [Shewanella sediminis
HAW-EB3]
Length = 567
Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 42/101 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E+D V L RG E +++ +T + R+ V + A
Sbjct: 13 IEGHLRVEVEVDENNVINKAWSSSTLWRGIEVILKGRTPMDVGLIVQRICGVCTYSHYRA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LG EIP+ + +R L + H+++
Sbjct: 73 GIEAVENALGTEIPLNAKYLRSLMQTSLYMHDHIVHFYHLH 113
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 45/358 (12%), Positives = 77/358 (21%), Gaps = 90/358 (25%)
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
AL+ L E + G H GGV + W
Sbjct: 189 ALSHYLKALEVQRVAAEMLAIFGGKSPHPQSLVVGGVTSVRDMLSPARLQEWKQKHAIVT 248
Query: 185 NDISDLLTGNRIFK------------------------------QRNVNIGTVKLEDAWG 214
+ I + + Q + G + D G
Sbjct: 249 DFIHRAYKADIVMAAAAFGGEPSVLGGVNVKNFMATNDFVLADGQYMFDQGVIMNGDLAG 308
Query: 215 WGFSGVMIRGSGAAWDLRK----SQPYECYSELDFDIPI-------------GKHGDCYD 257
+ K PY+ + D+ + G +
Sbjct: 309 VTDINPDLIKEDVTHAWYKADGAQHPYDGTTVPDYTGFVERDTVYGKLPTLDGDGKYSWV 368
Query: 258 RYLVRMMEMRESVKIIRQCVNRLLGKNKV----------------------GPVSASDPK 295
+ E E + V+ G V G +A +
Sbjct: 369 KSPRYDDEPMEVGPLASLLVSYAKGNKVVVDSVNGLLEATGLPIEALFTTLGRTAARMLQ 428
Query: 296 IVPPKRADMKRSMESLIHHFKLYTEGYHV---PVGEVYA--AVEAPKGEFGVYLISDGGN 350
V +K L++ + E +EAP+G ++ G
Sbjct: 429 TVIVAEEGLKTFDAMLVNMQSDESTYVKPVMDSSQEYVGHSMIEAPRGMLSHWIRIKG-G 487
Query: 351 KPYRCKIRAPGYAH---------LQAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
+ P + + E G +L D V I+ S D
Sbjct: 488 LVENYQAVVPTTWNAGPVDANGKMGPYEASLIGLKLEDPTKPLEVIRIIHSFDPCMAC 545
>gi|238762335|ref|ZP_04623306.1| Hydrogenase-2 large chain [Yersinia kristensenii ATCC 33638]
gi|238699320|gb|EEP92066.1| Hydrogenase-2 large chain [Yersinia kristensenii ATCC 33638]
Length = 528
Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats.
Identities = 37/387 (9%), Positives = 77/387 (19%), Gaps = 93/387 (24%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYF--- 156
L H +++ A+ L E + G H
Sbjct: 126 GQLGIFANGYWGHPAMALPPEVNLIAVAHYLQALECQRDANRIVAVLGGKTPHIQNLAVG 185
Query: 157 -RPGGVHQDIP-----------PELVEDIGCWCDSFPSALNDIS--------------DL 190
++ D+P ++ +G + + + D
Sbjct: 186 GVANPINLDMPSVLNLERLMLVKSFIDRLGSFIEQVYKVDTAVIAAHYPGWLNLGKGADD 245
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVM-----------IRGSGAAWDLRKSQPYEC 239
+ G + I SG + +P
Sbjct: 246 YLSVPELPTDRKGETFLLPGGYLENGTFRPITNHNDPYLIKGIAESGKHAWYQDDEPLAP 305
Query: 240 YSELDFDIPIGKH---GDCYDRYLVRMMEMRESVKIIR---------------------- 274
+ G + + + E +
Sbjct: 306 WEGKTNPNYTGWQEEGKYSWVKAPTFYGKTVEVGPLAWLMCGLAAGHAPTKQHFTDIGAA 365
Query: 275 ------QCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV-- 326
Q + + +G + ++ + + E + P
Sbjct: 366 YQKLSGQAITAEQLPSTLGRIIGRAVHCCVLHETLAQQWTALVTNIGTGDVETFIKPDIP 425
Query: 327 --GE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCK 373
GE EAP+G +++ K + P + E
Sbjct: 426 LNGEIRGVGFEEAPRGMLSHWVVIK-DGKIANYQAVVPSTWNAGPRNYNDEPGPYEQALV 484
Query: 374 GHQLAD------VSAILGSLDIVFGEV 394
G +AD V + S D
Sbjct: 485 GTPVADPAKPLEVVRTIHSFDPCMSCA 511
Score = 89.2 bits (220), Expect = 1e-15, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 33/77 (42%)
Query: 45 LHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYS 104
+ RG E++++ A R+ V A AVE LG+E+P+ Q IR L
Sbjct: 1 MWRGMEEILQGNDPRDAWMIVQRICGVCTTIHAIASVRAVENALGMEVPVNAQHIRNLIL 60
Query: 105 EIGRILSHLLNVTTQAM 121
I H+++ +
Sbjct: 61 AAHSIHDHIVHFYQLSA 77
>gi|296137493|ref|YP_003644735.1| nickel-dependent hydrogenase large subunit [Thiomonas intermedia
K12]
gi|295797615|gb|ADG32405.1| nickel-dependent hydrogenase large subunit [Thiomonas intermedia
K12]
Length = 605
Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 43/102 (42%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D + + R G + RG E +++ + + +R+ V A
Sbjct: 27 IEGHMRCEVNVDKDNIIRNAVSTGTMWRGLEVIVKGRDPRDVWAFVERICGVCTGCHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE L I IP LIR + ++ ++ H+++
Sbjct: 87 SVRAVEDALNIRIPKNAYLIREMMAKTLQVHDHVVHFYHLHA 128
Score = 97.7 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 36/390 (9%), Positives = 78/390 (20%), Gaps = 118/390 (30%)
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVED-------- 172
D+ +T L + + + + + G H Y G +
Sbjct: 199 ADLMGVTHYLEALDMQREFVKVHTIFGGKNPHPNYLVGGVPCAINMDGDLAAGAPLNMER 258
Query: 173 ---IGCWCDSFPSALNDIS--DLLTGNRIFKQRNVNIGT-------------VKLEDAWG 214
+ +++ D++ +K G V+ + +
Sbjct: 259 LNFVRARIQEMVDFCHNVYVPDVIAIASFYKDWLYGGGLGAKSVMDYGDYAKVQGDKSTD 318
Query: 215 WGFSGVMIRG-----------------SGAAWDLRKS--------QPYECYSELDFD--- 246
GV++ G + P++ +E F+
Sbjct: 319 QMPGGVILNGNWNEVFEVDPRDPEQVQEFVSHSWYTYPGQENKGLHPWDGVTEPKFELGP 378
Query: 247 ----------IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSAS---- 292
+ + E + R +
Sbjct: 379 NTKGSKTNIQEIDESAKYSWIKAPRWKGHAVEVGPLSRYTIAYAKNLPHQREQVDRSVAF 438
Query: 293 ------------------------DPKIVPPKRADMKRSMESLIHHFK----------LY 318
M LI + K +
Sbjct: 439 FNQLAGTSVDPKTALQTTIGRTLARALEAEYCADMMVDDWNDLIANIKAGDSSTANMEKW 498
Query: 319 TEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA---------HLQAME 369
+ A V AP+G G ++ + + P ++ A E
Sbjct: 499 DPSTWPKEAKGVATVAAPRGALGHWIRIK-DGRVENYQAVVPTTWNGSPRDPAGNIGAFE 557
Query: 370 FLCKGHQL--AD----VSAILGSLDIVFGE 393
++ D + L S D
Sbjct: 558 ASLMNTKMERPDEPVEILRTLHSFDPCLAC 587
>gi|323700647|ref|ZP_08112559.1| nickel-dependent hydrogenase large subunit [Desulfovibrio sp.
ND132]
gi|323460579|gb|EGB16444.1| nickel-dependent hydrogenase large subunit [Desulfovibrio
desulfuricans ND132]
Length = 572
Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats.
Identities = 46/369 (12%), Positives = 85/369 (23%), Gaps = 78/369 (21%)
Query: 102 LYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGV 161
+++ + H V +++ A L + K H + GGV
Sbjct: 187 IFTNAYFLGGHPAYVLPPEVNLLATNHYLNALHLQVKAARAMAVFGAKNPHTQFTVMGGV 246
Query: 162 HQDI--PPELVEDIGCWCDSFPSALNDIS--DLLTGNRIFKQRNVNIGTVKLEDAWGWGF 217
+ + D + D DL+ +K GT +
Sbjct: 247 TCYEGLTDKYINDFLALYADIKDFILDCYIPDLIAVAGYYKDWAKIGGTTNFMSFGEYPA 306
Query: 218 SG---------------------------VMIRGSGAAWDLRKS----QPYECYSELDFD 246
G K PY ++ +
Sbjct: 307 QGGEADLNSRYIKPGVIFDRKITDVMAFDPTKIEEHVKHSWYKDDTPKHPYAGVTDPMYT 366
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPV----------------- 289
K + + E + VN LG +
Sbjct: 367 SLDDKAKYSWMKAPRYDGRATEVGPLATCLVNYGLGHPEFVKYVNFVLGKLEVGPDALFS 426
Query: 290 -------SASDPKIVPPKRADMKRSM-ESLIHHFKLYTEGYHVP-VGEVYAAVEAPKGEF 340
+ I K DM + E++ + + +P + V AP+G
Sbjct: 427 TLGRTGARGIECLITCLKTEDMVNDLKENIAKGNLDICKDWDMPSEAQGVGFVNAPRGGL 486
Query: 341 GVYLISDGGNKPYRCKIRAPGYAHLQAM----------EFLCKGHQLAD------VSAIL 384
++ G K ++ P +L E L +AD + +
Sbjct: 487 SHWMSIKG-GKIDNFQLVVPSTWNLGPRCDNNIPGPTEEALLDNTPIADPERPVEILRTV 545
Query: 385 GSLDIVFGE 393
S D
Sbjct: 546 HSYDPCIAC 554
Score = 101 bits (253), Expect = 2e-19, Method: Composition-based stats.
Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 3/107 (2%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ ++ + V L RG E +++ + A + R V A
Sbjct: 26 IEGHLRIEAVVEDGKIVDVR-SSSQLFRGLEIILKGRDPRDAQHFTQRSCGVCTYVHALA 84
Query: 80 YALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
V+ +G+ E+P +IR L + H+++
Sbjct: 85 SIRCVDNAVGVDKELPHNATIIRNLVMAAQFMHDHIVHFYHLHALDF 131
>gi|74356068|dbj|BAE44405.1| hydrogen-uptake [NiFe] hydrogenase large subunit [Nitratifractor
salsuginis]
Length = 557
Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats.
Identities = 44/366 (12%), Positives = 78/366 (21%), Gaps = 102/366 (27%)
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIP------PELVEDIGCWCDSFP 181
L + + ++ G H GGV E + + +F
Sbjct: 193 HYLEALDMQREMSKMMAIYGGKMPHPQSIVVGGVTCVQDIINPARNEEFKSLLRKARNFV 252
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF---------------SGVMIRGS- 225
+ G + G GF SGV++ G
Sbjct: 253 KNAYLADIAMAGAVYSDEALDGTGGGLKNYMAYGGFRLDDNEFYKAKTLFPSGVVLNGDL 312
Query: 226 --GAAWDLRK------------SQPYECYSELDFDIPIG-------------KHGDCYDR 258
+D K P + G + +
Sbjct: 313 SKVYPFDQAKVTEDVTHSWYDAPAPQHPFDGTTNPHYTGLAKKSDGMAYLKTDEKYSWIK 372
Query: 259 YLVRMMEMRESVKIIRQCV----------NRLLGKNKVGPVSASDPKIVP---------- 298
V + E + R V ++G + K P
Sbjct: 373 APVYGDQRVEVGPLARMVVGVAAKDERITRYVMGFLERLGGLLGLGKAAPASVLFSTVGR 432
Query: 299 ---------PKRADMKRSMESLIHHFKLYTEGYHV--------PVGEVYAAVEAPKGEFG 341
M ++ L + + Y EAP+G G
Sbjct: 433 TAARAIETEMMADVMMEWIDELAANVAAGDHSTWTEFDFDSVSKDAKGYGLEEAPRGALG 492
Query: 342 VYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLAD------VSAILGS 386
++ K + P + + A E G ++AD + + S
Sbjct: 493 HWVKIK-DGKIENYQAVVPSTWNASPRDGKGRMGAYEAALIGTKVADPEQPLEILRTVHS 551
Query: 387 LDIVFG 392
D
Sbjct: 552 FDPCIA 557
Score = 96.6 bits (239), Expect = 6e-18, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 36/101 (35%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +D V + + RG E +++ + A R+ V
Sbjct: 14 IEGHLRIEAVIDENNVIKDAYASSTMFRGIETILKGRDPRDAGLLAMRICGVCTGTHYQR 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
VE G++IP +L+R L + H ++
Sbjct: 74 SIEGVEHAFGVKIPKNARLVRNLMQGALYLHDHTVHFYHLH 114
>gi|50403695|sp|O33406|MBHL_OLICO RecName: Full=Uptake hydrogenase large subunit; AltName:
Full=Hydrogenlyase; AltName: Full=Membrane-bound
hydrogenase large subunit
Length = 604
Score = 102 bits (255), Expect = 8e-20, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 43/102 (42%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D V R G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNVDSNNVIRNAVSTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGCHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE L I IP LIR + +++ + H+++
Sbjct: 87 SVRAVENALDIRIPPNAHLIREIMAKVLQWHDHVVHFYHLHA 128
Score = 96.9 bits (240), Expect = 4e-18, Method: Composition-based stats.
Identities = 24/236 (10%), Positives = 49/236 (20%), Gaps = 54/236 (22%)
Query: 211 DAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESV 270
+ + G P + D + + E
Sbjct: 352 WYKYPDEAKGLHPWDGVTEHNYALGPNTKGTRTDIKQLDEAAKYSWIKSPRWRGHAVEVG 411
Query: 271 KIIRQCVNRL--------------------------LGKNKVGPVSASDPKIVPPKR--A 302
+ R +N + + + + + A
Sbjct: 412 PLSRYILNYAQGNQYVIEQVDSSLAAFNKLAGTNLTPKQALPSTIGRTLARALEAHYCAA 471
Query: 303 DMKRSMESLIHHFK----------LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKP 352
M + LI + K + + Y V AP+G G ++ K
Sbjct: 472 MMLDDWKELIGNIKAGDSSTANVEKWDPSTWPKEAKGYGLVAAPRGANGHWIRIK-DGKI 530
Query: 353 YRCKIRAPGYA---------HLQAMEFLCKGHQLA------DVSAILGSLDIVFGE 393
+ P ++ A E + ++ L S D
Sbjct: 531 ANYQCIVPTTWNGSPRDPAGNIGAFEASLMNTPMERPEEPVEILRTLHSFDPCLAC 586
>gi|315091144|gb|EFT63120.1| conserved domain protein [Propionibacterium acnes HL110PA4]
Length = 201
Score = 102 bits (255), Expect = 8e-20, Method: Composition-based stats.
Identities = 48/167 (28%), Positives = 74/167 (44%), Gaps = 1/167 (0%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
KK ++ G HP+ G++ + +D +++ ++G LHRG EKL E + + Q
Sbjct: 22 KKYEVTWLDLGHLHPSRPGLVTITTTVDDDVITSSQVNVGNLHRGDEKLFEARGYRQIPM 81
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
R D+ AP E A A+E +GI IP R IR L +E RI SH ++
Sbjct: 82 LASRHDWTAPFIGETGAAHAIEDAMGITIPTRVAWIRTLLAEFSRITSHFTFLSWVGHHC 141
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELV 170
E ++R SG+R+H R GG+ + P
Sbjct: 142 DDAGLENAIATAIENARRIWQRCSGNRIHPMITRIGGL-RIHPESEC 187
>gi|314982620|gb|EFT26712.1| conserved domain protein [Propionibacterium acnes HL110PA3]
Length = 215
Score = 102 bits (255), Expect = 8e-20, Method: Composition-based stats.
Identities = 48/167 (28%), Positives = 74/167 (44%), Gaps = 1/167 (0%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
KK ++ G HP+ G++ + +D +++ ++G LHRG EKL E + + Q
Sbjct: 36 KKYEVTWLDLGHLHPSRPGLVTITTTVDDDVITSSQVNVGNLHRGDEKLFEARGYRQIPM 95
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
R D+ AP E A A+E +GI IP R IR L +E RI SH ++
Sbjct: 96 LASRHDWTAPFIGETGAAHAIEDAMGITIPTRVAWIRTLLAEFSRITSHFTFLSWVGHHC 155
Query: 124 GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELV 170
E ++R SG+R+H R GG+ + P
Sbjct: 156 DDAGLENAIATAIENARRIWQRCSGNRIHPMITRIGGL-RIHPESEC 201
>gi|47177023|ref|YP_015634.1| HoxL [Oligotropha carboxidovorans OM5]
gi|47115414|emb|CAG28467.1| HoxL [Oligotropha carboxidovorans OM5]
Length = 606
Score = 102 bits (255), Expect = 8e-20, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 43/102 (42%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D V R G + RG E +++ + A + +R+ V A
Sbjct: 29 IEGHMRCEVNVDSNNVIRNAVSTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGCHALA 88
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE L I IP LIR + +++ + H+++
Sbjct: 89 SVRAVENALDIRIPPNAHLIREIMAKVLQWHDHVVHFYHLHA 130
Score = 96.9 bits (240), Expect = 5e-18, Method: Composition-based stats.
Identities = 24/236 (10%), Positives = 49/236 (20%), Gaps = 54/236 (22%)
Query: 211 DAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESV 270
+ + G P + D + + E
Sbjct: 354 WYKYPDEAKGLHPWDGVTEHNYALGPNTKGTRTDIKQLDEAAKYSWIKSPRWRGHAVEVG 413
Query: 271 KIIRQCVNRL--------------------------LGKNKVGPVSASDPKIVPPKR--A 302
+ R +N + + + + + A
Sbjct: 414 PLSRYILNYAQGNQYVIEQVDSSLAAFNKLAGTNLTPKQALPSTIGRTLARALEAHYCAA 473
Query: 303 DMKRSMESLIHHFK----------LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKP 352
M + LI + K + + Y V AP+G G ++ K
Sbjct: 474 MMLDDWKELIGNIKAGDSSTANVEKWDPSTWPKEAKGYGLVAAPRGANGHWIRIK-DGKI 532
Query: 353 YRCKIRAPGYA---------HLQAMEFLCKGHQLA------DVSAILGSLDIVFGE 393
+ P ++ A E + ++ L S D
Sbjct: 533 ANYQCIVPTTWNGSPRDPAGNIGAFEASLMNTPMERPEEPVEILRTLHSFDPCLAC 588
>gi|301057871|ref|ZP_07198938.1| Periplasmic [NiFe] hydrogenase large subunit domain protein [delta
proteobacterium NaphS2]
gi|300448025|gb|EFK11723.1| Periplasmic [NiFe] hydrogenase large subunit domain protein [delta
proteobacterium NaphS2]
Length = 349
Score = 102 bits (255), Expect = 8e-20, Method: Composition-based stats.
Identities = 23/181 (12%), Positives = 43/181 (23%), Gaps = 42/181 (23%)
Query: 254 DCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR------------ 301
+ + E E + R V GK V K +
Sbjct: 152 YSWSKAPRYEGEPCEVGPLARVLVAYAYGKKDFVSVVDDTLKKLDIPVTALFSTLGRTAA 211
Query: 302 ---------ADMKRSMESLIHHFK-----LYTEGYHVPVGEVYAAVEAPKGEFGVYLISD 347
M+ + L+ + K + G+ + +G G ++
Sbjct: 212 RGLETLVIGNAMEGWIMELVENLKSGDTATCAKWTMPDKGKGIGLNDVARGSLGHWIEI- 270
Query: 348 GGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VSAILGSLDIVFG 392
K + P +L +E G +AD + + S D
Sbjct: 271 ENKKIKNYQYVVPSTWNLGPRCENGKPGPVEEALIGTPVADPKRPIEILRTVHSFDPCIA 330
Query: 393 E 393
Sbjct: 331 C 331
>gi|317051260|ref|YP_004112376.1| nickel-dependent hydrogenase large subunit [Desulfurispirillum
indicum S5]
gi|316946344|gb|ADU65820.1| nickel-dependent hydrogenase large subunit [Desulfurispirillum
indicum S5]
Length = 570
Score = 102 bits (255), Expect = 8e-20, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 2/102 (1%)
Query: 20 AHGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G LR+ + +D + G L RG E++++ + A R+ V +
Sbjct: 13 IEGHLRVDVVIDDNNTITDA-FASGTLFRGIEEILKGRDPRDAGFMTQRICGVCTYSHYK 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
A AVE LGI P QL+R L + HL++
Sbjct: 72 AGIEAVENALGIIPPYNAQLVRSLMGIALFMHDHLVHFYHLH 113
Score = 99.6 bits (247), Expect = 8e-19, Method: Composition-based stats.
Identities = 38/384 (9%), Positives = 75/384 (19%), Gaps = 90/384 (23%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H T ++ L+ L E + + H G
Sbjct: 164 GHLGPFANAYWGHGTYHFTPEQNLIVLSHYLKALEIQRTAAQMLAVFGAKQPHPQSLTVG 223
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQR------------------- 200
GV + E +G + F + I +
Sbjct: 224 GVTCIMDLESPARLGEFLTRFEETADFIRRAYYADVKMAAEAYVGEDSVLKGCNIKNFLS 283
Query: 201 ------------NVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
+ + + + + MI R + P Y
Sbjct: 284 ASQYQINRTETIFDSGYILNGDLSRVYEVDEQMITEEATHAWYRDNAPLHPYEGKTNPNY 343
Query: 249 IGKH----------------GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPV--- 289
G + + E + + V G +V +
Sbjct: 344 TGFQDGDTVNGRAKILDGDGKYTWVKAPRYDGRPMEVGPLAQMLVGYGKGNPRVQRIVNT 403
Query: 290 ----------------------SASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVG 327
+V + +E+L +
Sbjct: 404 FLQETGLPTEALFSTLGRTAARMLQTILMVDCGKETFMNLIENLKVDRETCAPYSIRKDR 463
Query: 328 EVYAA--VEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQ 376
E + + P+G + +S + P + E G +
Sbjct: 464 EYRGSFNGDVPRGALSHW-VSIKNGVIDHYQAVVPSTWNASPKDAQGQSGPYEAALIGTR 522
Query: 377 LAD------VSAILGSLDIVFGEV 394
L D + + S D
Sbjct: 523 LQDPTKPLEIIRTIHSFDPCLACA 546
>gi|218886825|ref|YP_002436146.1| nickel-dependent hydrogenase large subunit [Desulfovibrio vulgaris
str. 'Miyazaki F']
gi|218757779|gb|ACL08678.1| nickel-dependent hydrogenase large subunit [Desulfovibrio vulgaris
str. 'Miyazaki F']
Length = 549
Score = 102 bits (255), Expect = 9e-20, Method: Composition-based stats.
Identities = 37/338 (10%), Positives = 78/338 (23%), Gaps = 74/338 (21%)
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQD---IPPELVEDIGCWCDSFPSALN 185
+ + K+ +G H+ R GGV P L E + + +
Sbjct: 197 YIEALRVQMKIAKAMAIFAGKNPHSQTMRVGGVTCYEALRPERLAEFRALYEECRTFINH 256
Query: 186 DISDLLT-------------------------GNRIFKQRNVNIGTVKLEDAWGWGFSGV 220
+ LT K G +
Sbjct: 257 NYLGDLTILGRRYPEVAAYGRTTNYMDFSDFHDPETGKDPFFRGGVLWGHAIGKTEELDP 316
Query: 221 MIRGSGAAWDLRKS----QPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQC 276
+ K PY+ ++ D+ + + E E+ + R+
Sbjct: 317 AQIQEHLSRGWYKPGPPAHPYDGVTDPDYTGYDPNGHYSWSKAPRYKGEAVETGALARRL 376
Query: 277 VNRLLGKNKVGPVSASDPKIVPPKRA---------------------DMKRSMESLIHHF 315
+ G+ + + K+ ++ + L
Sbjct: 377 IAYSRGEQETVTRMDAWLAACKLKQENLFSTMGRTAARMVESVILMNRVQGWLNDLEDRA 436
Query: 316 K-----LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL----- 365
K +Y E + +G ++ K ++ P +L
Sbjct: 437 KAGPVEIYREWTMPDEAKGVGFCAVTRGGLSHWIRI-EKGKTANYQMVVPSTWNLGPRCD 495
Query: 366 ----QAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
A+E G+ + D + + S D
Sbjct: 496 KGKPSAVEQSLMGNPVLDPDRPVELLRTVHSFDPCIAC 533
Score = 88.5 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 1/105 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L++ + + +V+ L RG E +++ + Y R V
Sbjct: 18 IEGHLKIDVSVRNGVVDNA-WSSTQLFRGLEIIVKGRPPEDVHNYVQRACGVCTTTHSLT 76
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
AVE +G + P +L+R L + HL++
Sbjct: 77 SIRAVENAMGFKAPPAAELVRHLILATLIVHDHLVHFYHLHSLDF 121
>gi|319790096|ref|YP_004151729.1| nickel-dependent hydrogenase large subunit [Thermovibrio
ammonificans HB-1]
gi|317114598|gb|ADU97088.1| nickel-dependent hydrogenase large subunit [Thermovibrio
ammonificans HB-1]
Length = 581
Score = 102 bits (255), Expect = 9e-20, Method: Composition-based stats.
Identities = 18/102 (17%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + + ++ + RG E +++ + A + R+ V A
Sbjct: 13 IEGHLRIEVVPENGYIKDA-YSSSQMWRGIEVILQGRDPDDAWMFAQRICGVCTTVHAIA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+VE L +E+P Q++R + + H+++ +
Sbjct: 72 SVRSVENALNLEVPYNAQMVRNIIIAAHALHDHIVHFYHLSA 113
Score = 91.2 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 16/112 (14%), Positives = 30/112 (26%), Gaps = 18/112 (16%)
Query: 300 KRADMKRSMESLIHHFKLYTEGYHVPVGE--VYAAVEAPKGEFGVYLISDGGNKPYRCKI 357
++ ++++ P GE EAP+G + + K +
Sbjct: 454 ALKQWEQLVDNIGRGDLEIYNPPSYPKGEIKGCGFHEAPRGTLSHWTVI-ENGKIKNYQA 512
Query: 358 RAPGYAHLQ---------AMEFLCKGHQLA------DVSAILGSLDIVFGEV 394
P + E G+ LA +V + S D
Sbjct: 513 VVPSTWNSSPRDDKGQRGPYEASLIGNPLAIPEKPLEVLRTVHSFDPCIACA 564
>gi|213423475|ref|ZP_03356456.1| hydrogenase-1 large subunit [Salmonella enterica subsp. enterica
serovar Typhi str. E01-6750]
Length = 177
Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 37/102 (36%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
+R + +D V G + RG E +++ + A + +R+ V
Sbjct: 27 IEEHMRCEVNIDSNNVITNAVSTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGTHALT 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI IP IR + + HL++
Sbjct: 87 SIRAVENALGIAIPDNANCIRNMMQATLHVHDHLVHFYHLHA 128
>gi|94971266|ref|YP_593314.1| nickel-dependent hydrogenase, large subunit [Candidatus Koribacter
versatilis Ellin345]
gi|94553316|gb|ABF43240.1| nickel-dependent hydrogenase, large subunit [Candidatus Koribacter
versatilis Ellin345]
Length = 563
Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +++D V + RG E +++ + A + R V A
Sbjct: 13 IEGHLRVDVQVDNNSVTNAWASC-TMWRGIENILKGRDPRDAWLFTQRFCGVCTTVHAMA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE L +EIP+ Q IR L + H+++ +
Sbjct: 72 SVRAVEDALKLEIPLNAQYIRNLILIAHALHDHIVHFYQLSA 113
Score = 94.2 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 42/386 (10%), Positives = 79/386 (20%), Gaps = 92/386 (23%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H + +++ A + + E + K + H PG
Sbjct: 162 GQLGIFANGYWGHPAMRLSPEVNLLAFSHYMQALEYQRKALQIVGILGSKTPHIQNLTPG 221
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS- 218
GV I + + L G G +
Sbjct: 222 GVSNAIDLDSQSALNMERLEMIRGLFAEVSRFINEVYLVDVCAVASMYPEWFNIGSGVTN 281
Query: 219 -----------------------------------------GVMIRGSGAAWDLRKS-QP 236
GV + A + K P
Sbjct: 282 YLAVPDLPLDSRGSSYDLPGGYIGAGGLKSFQTASDDAFRKGVTEDVTHAYYSGDKPLHP 341
Query: 237 YECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPV------- 289
+E + F G + + + + + + + G
Sbjct: 342 WEGETNPQFTGWNGDEKYSWVKAPRFNGDPAQVGPLAQVLIGYTQGHALTKKYVGLAAEK 401
Query: 290 -------------------SASDPKIVPPKRADMKRSMESLIHH--FKLYTEGYHVP--- 325
+ I A++ + L+ + K Y+ P
Sbjct: 402 VHAVSGIQLQPAMLHSTLGRHAARAIRAGMLAELAQKHLDLLTNNIAKGDYSVYNAPVFP 461
Query: 326 --VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKG 374
E EAP+G +++ K + P + E
Sbjct: 462 SHEVEGVGTHEAPRGTLSHWIVIKDE-KIKNYQAVVPSTWNASPRDQKNAHGPYEASLLH 520
Query: 375 HQLA------DVSAILGSLDIVFGEV 394
LA +V + S D
Sbjct: 521 TPLARPQEPLEVLRTIHSFDPCMACA 546
>gi|323251639|gb|EGA35507.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008282]
Length = 73
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 42/73 (57%)
Query: 324 VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAI 383
+P E + VEA KG YL SDG YR ++R P +AHLQ + +G ++D+
Sbjct: 1 MPAQESFQMVEATKGINSYYLTSDGSTMSYRTRVRTPSFAHLQQIPSAIRGSLVSDLIVY 60
Query: 384 LGSLDIVFGEVDR 396
LGS+D V +VDR
Sbjct: 61 LGSIDFVMSDVDR 73
>gi|289548879|ref|YP_003473867.1| nickel-dependent hydrogenase large subunit [Thermocrinis albus DSM
14484]
gi|289182496|gb|ADC89740.1| nickel-dependent hydrogenase large subunit [Thermocrinis albus DSM
14484]
Length = 627
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 45/364 (12%), Positives = 95/364 (26%), Gaps = 43/364 (11%)
Query: 72 APMNQE-HAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
++ E + E+L +E I Q+ V Y + +L+ + G
Sbjct: 247 CSISFEDMNAPINAERLAVVEDSIYTQIEAVNYFYLIDLLAIGHLYVQKGQTYGGGLAKK 306
Query: 131 WGFEEREKLMVFYERASGSRMHA-AYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
E Y G HA + GV +D + + ++
Sbjct: 307 RVIGYGEFPDEPYRNIKGGDYHAKILYHSNGVVEDFAEGVEKAKYYPMVGKDFTNPEVIQ 366
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ +K + G + ++G L + Y +
Sbjct: 367 EFVAHSWYKYPDETKGLHPWDGITEPNYTGPKEGTKTQWKYLDEKGKYSWIKSPRWRGKP 426
Query: 250 GKHGDCYDRYLVRMM---------EMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP- 299
+ G ++ M E V V+++LG + + +
Sbjct: 427 CEVGPLARYIVIYTAVKQGHIKPSWMDEMVVRQIDLVSKVLGLPPHVWLPTTVGRTAARG 486
Query: 300 ---------------KRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
K D ++ ++ + + + + + EAP+G G +
Sbjct: 487 LEAQVGAAANLYFFKKLVDNIKAGDTAVANMEKWDPSTWPKEAKGVGITEAPRGSLGHWC 546
Query: 345 ISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLA------DVSAILGSLDI 389
+ K + P + A E K + +V + S D
Sbjct: 547 VIK-DGKIANYQCVVPTTWNGSPRDPMGGQGAFEECMKDTPVKVVDKPLEVLRGIHSFDP 605
Query: 390 VFGE 393
Sbjct: 606 CLAC 609
Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 3/104 (2%)
Query: 20 AHGVLRLILELDG--EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQE 77
G LR+ L +D V G + RG E ++ + + R+ V
Sbjct: 12 IEGHLRIELIVDEKSGKVLDA-VSSGTMWRGIELIVRNRDPRDVWAFTQRICGVCTSIHA 70
Query: 78 HAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A VE L I+IP IR + ++ HL++
Sbjct: 71 LASVRCVEDALDIQIPKNANYIRNIMYGSLQVHDHLVHFYHLHA 114
>gi|46580930|ref|YP_011738.1| periplasmic [NiFe] hydrogenase large subunit, isozyme 2
[Desulfovibrio vulgaris str. Hildenborough]
gi|46450350|gb|AAS96998.1| periplasmic [NiFe] hydrogenase, large subunit, isozyme 2
[Desulfovibrio vulgaris str. Hildenborough]
gi|311234621|gb|ADP87475.1| nickel-dependent hydrogenase large subunit [Desulfovibrio vulgaris
RCH1]
Length = 549
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 40/364 (10%), Positives = 83/364 (22%), Gaps = 81/364 (22%)
Query: 111 SHLLNVTTQAMDVGAL-------TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQ 163
+H ++ + T L + + K+ SG HA + GGV
Sbjct: 172 NHAYSLGGHPAYRLSPEENLILATNYLEALKVQMKIARAMAIFSGKNPHAQTMQVGGVTC 231
Query: 164 D---IPPELVEDIGCWCDSFPSALNDISDLLT-------------------------GNR 195
P + E + D+ ++ LT
Sbjct: 232 YESLRPERIAEFRALYEDTRAFINHNYVGDLTILGKRYPEVATYGRTTNFMDFSDFFDPE 291
Query: 196 IFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKS----QPYECYSELDFDIPIGK 251
K G + D A PY+ + D+
Sbjct: 292 TGKAPFFRGGVMWARDFKKVEEVNPEQIVEHVAHSWYVKGAPKPPYDGVTAPDYTGYDQN 351
Query: 252 HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM------- 304
+ + E E+ + R+ + G+ + + + +M
Sbjct: 352 DRYSWAKAPRYRGEPVETGPLARRMLAYARGEQETVRRMDAWLAACGLNKENMFSTMGRT 411
Query: 305 --------------KRSMESLIHHFK-----LYTEGYHVPVGEVYAAVEAPKGEFGVYLI 345
+ + L K ++ + +G ++
Sbjct: 412 AARMVECVVLMNRIEGWLNDLEARIKAGPVEIFKPWKMPDKAKGVGFCAVTRGGLSHWIR 471
Query: 346 SDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLADVS------AILGSLDIV 390
G K ++ P +L +E G+ + D + S D
Sbjct: 472 I-EGGKTANYQMVVPSTWNLGPRCEAGKPSPVEESLMGNPVLDAERPVEVLRTVHSFDPC 530
Query: 391 FGEV 394
Sbjct: 531 LACA 534
Score = 96.2 bits (238), Expect = 9e-18, Method: Composition-based stats.
Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 1/107 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L++ +++ V L RG E +++ + Y R+ V
Sbjct: 18 IEGHLKIDVDVKDGKVANA-WSSAQLFRGIEMIVQGRPPEDVHHYVQRVCGVCTTTHALT 76
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
AVE +G++ P +L+R+L + HL++
Sbjct: 77 SIRAVENAIGLKPPPAAELVRLLILSTLDVHDHLVHFYHLHSLDFFD 123
>gi|296272900|ref|YP_003655531.1| nickel-dependent hydrogenase large subunit [Arcobacter nitrofigilis
DSM 7299]
gi|296097074|gb|ADG93024.1| nickel-dependent hydrogenase large subunit [Arcobacter nitrofigilis
DSM 7299]
Length = 576
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 42/101 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E+D V + L RG E +++ + A R+ V + A
Sbjct: 14 IEGHLRIEVEIDENNVIKNAFASSTLWRGLETIVKNRDPRDAGFLMQRICGVCTFSHYRA 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE L I P+ +L R L ++ + HL++
Sbjct: 74 GIEAVEDALKITPPLNAKLTRSLMNQALFMHDHLVHFYHLH 114
Score = 88.5 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 40/389 (10%), Positives = 88/389 (22%), Gaps = 99/389 (25%)
Query: 102 LYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGV 161
L H T ++ AL+ L E + G + H GGV
Sbjct: 167 LGPFANAYWGHETFRLTPEQNLIALSHYLKALEVQRTAAQLMAMFGGKQPHPQSLTVGGV 226
Query: 162 HQDIPPELVEDIGCWCDSFPS-----ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGW- 215
+ + + + +D+L + + +
Sbjct: 227 TCVMDLLDPSRMSEYLTKYKEVANFIEHAYYADILMAGKAYASEPSVTAKAGTMNFMSHK 286
Query: 216 ----------GFSGVMIRGS------------------GAAWDLRKSQPYECYSELDF-- 245
+G+++ G D PY+ + ++
Sbjct: 287 EMQLNRSEFLFDTGIILNGDLSKVHPINEDLITEEATHSWYKDDEPLHPYDGKTNPNYTG 346
Query: 246 ----------------DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPV 289
+ K + + + E + V+ G ++ +
Sbjct: 347 MSEAMTIGAEGKEVHSKVIDEKGKYSWIKSPRYDGKAMEVGPLASVLVSYASGNKRIVKI 406
Query: 290 SA------------------SDPKIVPPKRADMKRSME---SLIHHFKLYTEGY------ 322
+A ++ +E +LI + K+ E Y
Sbjct: 407 VDGFLEETGLPTQALFTTLGRTAARALQVKAIIENGLETFDALIENLKVDQETYTTYKID 466
Query: 323 --HVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA---------MEFL 371
G V P+G ++ + P + E
Sbjct: 467 KEKEYKGRFIGDV--PRGMLSHWIRIK-NGVVENYQAVVPSTWNAGPEDSTGLKGPYESN 523
Query: 372 CKGHQLADV------SAILGSLDIVFGEV 394
G ++ D+ ++ S D
Sbjct: 524 LIGLKVKDITQPLEIIRVIHSFDPCIACA 552
>gi|120601768|ref|YP_966168.1| nickel-dependent hydrogenase, large subunit [Desulfovibrio vulgaris
DP4]
gi|120561997|gb|ABM27741.1| nickel-dependent hydrogenase, large subunit [Desulfovibrio vulgaris
DP4]
Length = 549
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 40/364 (10%), Positives = 83/364 (22%), Gaps = 81/364 (22%)
Query: 111 SHLLNVTTQAMDVGAL-------TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQ 163
+H ++ + T L + + K+ SG HA + GGV
Sbjct: 172 NHAYSLGGHPAYRLSPEENLILATNYLEALKVQMKIARAMAIFSGKNPHAQTMQVGGVTC 231
Query: 164 D---IPPELVEDIGCWCDSFPSALNDISDLLT-------------------------GNR 195
P + E + D+ ++ LT
Sbjct: 232 YESLRPERITEFRALYEDTRAFINHNYVGDLTILGKRYPEVATYGRTTNFMDFSDFFDPE 291
Query: 196 IFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKS----QPYECYSELDFDIPIGK 251
K G + D A PY+ + D+
Sbjct: 292 TGKAPFFRGGVMWARDFKKVEEVNPEQIVEHVAHSWYVKGAPKPPYDGVTAPDYTGYDQN 351
Query: 252 HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM------- 304
+ + E E+ + R+ + G+ + + + +M
Sbjct: 352 DRYSWAKAPRYRGEPVETGPLARRMLAYARGEQETVRRMDAWLAACGLNKENMFSTMGRT 411
Query: 305 --------------KRSMESLIHHFK-----LYTEGYHVPVGEVYAAVEAPKGEFGVYLI 345
+ + L K ++ + +G ++
Sbjct: 412 AARMVECVVLMNRIEGWLNDLEARIKAGPVEIFKPWKMPDKAKGVGFCAVTRGGLSHWIR 471
Query: 346 SDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLADVS------AILGSLDIV 390
G K ++ P +L +E G+ + D + S D
Sbjct: 472 I-EGGKTANYQMVVPSTWNLGPRCEAGKPSPVEESLMGNPVLDAERPVEVLRTVHSFDPC 530
Query: 391 FGEV 394
Sbjct: 531 LACA 534
Score = 96.2 bits (238), Expect = 8e-18, Method: Composition-based stats.
Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 1/107 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L++ +++ V L RG E +++ + Y R+ V
Sbjct: 18 IEGHLKIDVDVKDGKVANA-WSSAQLFRGIEMIVQGRPPEDVHHYVQRVCGVCTTTHALT 76
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
AVE +G++ P +L+R+L + HL++
Sbjct: 77 SIRAVENAIGLKPPPAAELVRLLILSTLDVHDHLVHFYHLHSLDFFD 123
>gi|158315204|ref|YP_001507712.1| nickel-dependent hydrogenase large subunit [Frankia sp. EAN1pec]
gi|158110609|gb|ABW12806.1| nickel-dependent hydrogenase large subunit [Frankia sp. EAN1pec]
Length = 573
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/385 (10%), Positives = 80/385 (20%), Gaps = 103/385 (26%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H + +++ A + L + + + + G H + GG+ I +
Sbjct: 173 HPAYRLSPELNLVAFSHYLDALDFQRDYIRVHALLGGKNPHPQTYVVGGMASPIDLNSQD 232
Query: 172 DI-----GCWCDSFPSALNDISDLLTGN--------RIFKQRNVNIGTVKLEDAWGWGFS 218
I L + + + + +G+ + +
Sbjct: 233 AINANTLQEVTQILQRGLEFVEQVFLPDLQAIGAAYPEWTTYGRGLGSYMVFGDYSLSPP 292
Query: 219 G----------------------------VMIRGSGAAWDL-RKSQPYECYSELDFDIPI 249
G A R P +
Sbjct: 293 GIARPPRDGLFPGGIIRNGNLAVKPEPFDPSGIAESVAHSWFRYDDPGAALPPWKGETTP 352
Query: 250 GKHG-------------DCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKI 296
G + + E + R V G ++ P+
Sbjct: 353 QYTGPEPPFEQLDVAGKYTWLKAPRYQGAAMEVGPVARMLVGYTSGDARIRPLVQGALDA 412
Query: 297 VPPKRADMK------------------RSMESLIHHFKLYTEG---------YHV---PV 326
+ + S+E + G + P
Sbjct: 413 LRLPPEALMSTLGRVVARGLETRLMAQYSLELVNRLRDNVAAGDLAVADTGRWRPTSWPE 472
Query: 327 GE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGH 375
G EAP+G +++ + + P + A E G
Sbjct: 473 GALLGVGFHEAPRGSLSHWVVI-EDGRIRNYQAVVPTTWNASPRDAEGNPGAYEAALVGT 531
Query: 376 QLAD------VSAILGSLDIVFGEV 394
+AD + L S D
Sbjct: 532 PVADPQRPLEILRTLHSFDPCMACA 556
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 1/100 (1%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +++DG V + RG E ++ + A + R+ V A
Sbjct: 12 IEGHLRVEVQVDGGQVTEA-YASSTMWRGIETILTGRDPRDAWLFAQRICGVCTSVHALA 70
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
AVE +G P+ +L+R L + + H+++
Sbjct: 71 SVRAVEDAVGAVPPLNARLLRDLIATSLCVHDHVVHFYHL 110
>gi|238799031|ref|ZP_04642491.1| Hydrogenase-2 large chain [Yersinia mollaretii ATCC 43969]
gi|238717128|gb|EEQ08984.1| Hydrogenase-2 large chain [Yersinia mollaretii ATCC 43969]
Length = 528
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 37/387 (9%), Positives = 75/387 (19%), Gaps = 93/387 (24%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYF--- 156
L H +++ A+ L E + G H
Sbjct: 126 GQLGIFANGYWGHPAMALPPEVNLIAVAHYLQALECQRDANRIVAVLGGKTPHIQNLAVG 185
Query: 157 -RPGGVHQDIP-----------PELVEDIGCWCDSFPSALNDIS--------------DL 190
++ D+P ++ +G + + + D
Sbjct: 186 GVANPINLDMPSVLNLERLMLVKSFIDRLGSFIEQVYKVDTAVIAAHYPGWLHLGKGADY 245
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIR-----------GSGAAWDLRKSQPYEC 239
+ G + SG + +P
Sbjct: 246 YLSVPELPTDRKGETFLLPGGYLDNGKFRPIANHNDPYLIQGIAESGKHAWYQDDEPLAP 305
Query: 240 YSELDFDIPIGKHGD---CYDRYLVRMMEMRESVKIIRQCVNRLLGKNK----------- 285
+ G D + + + E + G
Sbjct: 306 WEGKTNPNYTGWQEDGKYSWVKAPTFYGKTVEVGPLAWLMCGIAAGHEPTQQHFSDIGAA 365
Query: 286 -----------------VGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV-- 326
+G + ++ + + E + P
Sbjct: 366 YQKLSGQGITAEQLPSTLGRIIGRAVHCCVLHETLAQQWTALVTNIGTGDVETFIKPDIP 425
Query: 327 --GE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCK 373
GE EAP+G +++ K + P + E
Sbjct: 426 LTGEIRGVGFEEAPRGMLSHWVVIKE-GKIANYQAVVPSTWNAGPRNYNDEPGPYEQALV 484
Query: 374 GHQLAD------VSAILGSLDIVFGEV 394
G +AD V + S D
Sbjct: 485 GTPIADPAKPLEVVRTIHSFDPCMSCA 511
Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 33/77 (42%)
Query: 45 LHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYS 104
+ RG E++++ A R+ V A AVE LG+E+P+ Q IR L
Sbjct: 1 MWRGMEEILQGNDPRDAWMIVQRICGVCTTIHAIASVRAVENALGMEVPVNAQHIRNLIL 60
Query: 105 EIGRILSHLLNVTTQAM 121
I H+++ +
Sbjct: 61 AAHSIHDHIVHFYQLSA 77
>gi|238784603|ref|ZP_04628609.1| Hydrogenase-2 large chain [Yersinia bercovieri ATCC 43970]
gi|238714472|gb|EEQ06478.1| Hydrogenase-2 large chain [Yersinia bercovieri ATCC 43970]
Length = 537
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/387 (9%), Positives = 74/387 (19%), Gaps = 93/387 (24%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYF--- 156
L H +++ A+ L E + G H
Sbjct: 135 GQLGIFANGYWGHPAMALPPEVNLIAVAHYLQALECQRDANRIVAVLGGKTPHIQNLAVG 194
Query: 157 -RPGGVHQDIP-----------PELVEDIGCWCDSFPSALNDIS--------------DL 190
++ D+P ++ +G + + + D
Sbjct: 195 GVANPINLDMPSVLNLERLMLVKSFIDRLGSFIEQVYKVDTAVIAAHYPGWLHLGKGADN 254
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIR-----------GSGAAWDLRKSQPYEC 239
+ G + SG + +P
Sbjct: 255 YLSVPELPTDRKGETFLLPGGYLENGRFRPIANHNDPYLIKGIAESGKHAWYQDDEPLAP 314
Query: 240 YSELDFDIPIGKHGD---CYDRYLVRMMEMRESVKIIRQCVNRLLGKNK----------- 285
+ G D + + + E +
Sbjct: 315 WEGKTNPNYTGWQEDGKYSWVKAPTFYGKTVEVGPLAWLMCGMAADHGPTKQHFSDIGAA 374
Query: 286 -----------------VGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV-- 326
+G + ++ + + E + P
Sbjct: 375 YQQLSGQGITAEQLPSTLGRIIGRAVHCCVLHETLAQQWTALVTNIGTGDVETFIKPDIP 434
Query: 327 --GE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCK 373
GE EAP+G +++ K + P + E
Sbjct: 435 LTGEIRGVGFEEAPRGMLSHWVVIK-DGKIANYQAVVPSTWNAGPRNYNDEPGPYEQALV 493
Query: 374 GHQLAD------VSAILGSLDIVFGEV 394
G +AD V + S D
Sbjct: 494 GTPIADPAKPLEVVRTIHSFDPCMSCA 520
Score = 93.1 bits (230), Expect = 7e-17, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 34/82 (41%)
Query: 40 PHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLI 99
G + RG E++++ A R+ V A AVE LG+E+P+ Q I
Sbjct: 5 WSSGTMWRGMEEILQGNDPRDAWMIVQRICGVCTTIHAIASVRAVENALGMEVPVNAQHI 64
Query: 100 RVLYSEIGRILSHLLNVTTQAM 121
R L I H+++ +
Sbjct: 65 RNLILAAHSIHDHIVHFYQLSA 86
>gi|260887608|ref|ZP_05898871.1| uptake hydrogenase large subunit [Selenomonas sputigena ATCC 35185]
gi|330837975|ref|YP_004412555.1| Cytochrome-c3 hydrogenase [Selenomonas sputigena ATCC 35185]
gi|260862624|gb|EEX77124.1| uptake hydrogenase large subunit [Selenomonas sputigena ATCC 35185]
gi|329745739|gb|AEB99095.1| Cytochrome-c3 hydrogenase [Selenomonas sputigena ATCC 35185]
Length = 635
Score = 101 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 3/104 (2%)
Query: 20 AHGVLRLILELDG--EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQE 77
G LR+ +++D V G RG E ++ + A Y R+ V
Sbjct: 12 IEGHLRVEVQVDEATGKVTDA-LSSGTAWRGLELVMNGRDPRDAWAYIQRICGVCTTAHA 70
Query: 78 HAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI IP IR + + + HL++
Sbjct: 71 LCSVRAVEDALGIRIPTNANYIRNIMAGCLTVQDHLVHFYHLHA 114
Score = 97.3 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 10/93 (10%), Positives = 25/93 (26%), Gaps = 16/93 (17%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------Q 366
+ + +AP+G +++ K + P +
Sbjct: 517 DKWDPVTWPKEAKGVGLYDAPRGALSHWVVIK-NGKIANYQCVVPTTWNACPRDDAAGHG 575
Query: 367 AMEFLCKGHQLA------DVSAILGSLDIVFGE 393
A E ++A ++ ++ S D
Sbjct: 576 AYEMAMMDTRVAVPDKPLEIVRVIRSFDPCMAC 608
>gi|198284954|ref|YP_002221275.1| nickel-dependent hydrogenase large subunit [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218665733|ref|YP_002427639.1| [Ni/Fe] hydrogenase, large subunit [Acidithiobacillus ferrooxidans
ATCC 23270]
gi|198249475|gb|ACH85068.1| nickel-dependent hydrogenase large subunit [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218517946|gb|ACK78532.1| [Ni/Fe] hydrogenase, large subunit [Acidithiobacillus ferrooxidans
ATCC 23270]
Length = 585
Score = 101 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 27/240 (11%), Positives = 59/240 (24%), Gaps = 36/240 (15%)
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ I + + + + G ++G + + Y
Sbjct: 335 DQIQEFVAHSWYSYTVGKDQGLHPFAGQTHLDYTGPKPPYAHLDSEAS----YSWIKSPR 390
Query: 245 FDIPIGKHGDCYDRYLVRMMEMRE--------SVKIIRQCVNRLLGKNKVGPVSASDPKI 296
+ + + G R LV + S++ + V L + KI
Sbjct: 391 WKGKVMEVGPL-ARMLVLYASGNQEARTLVDSSLRKLGLPVEALFSTMGRTAARTLESKI 449
Query: 297 VPPKRADMKRSMESLIH-------HFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGG 349
+ + + I + L+ +EAP+G +++
Sbjct: 450 IADAMQGWYDQLMANIRAGELETFNPALWEPSTWPAEARGVGFMEAPRGALAHWVVIK-D 508
Query: 350 NKPYRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
+ P + E KG +L D + + S D
Sbjct: 509 GLIDNYQAVVPSTWNAGPRDAAGQDGPYEAALKGTELPDPAQPLEILRTIHSFDPCIACA 568
Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E+ ++ G + RG E +++ + A + R+ V + A
Sbjct: 14 IEGHLRIEAEVKDGLITGAS-SSGTMVRGLEIILQGRDPRDAWAFAQRICGVCTLVHGIA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE L IP QLIR L + H+++
Sbjct: 73 SVRAVEDALHYPIPQNAQLIRNLMIAAQFVHDHVMHFYQLHA 114
>gi|313893118|ref|ZP_07826695.1| membrane-bound hydrogenase 1 large subunit [Veillonella sp. oral
taxon 158 str. F0412]
gi|313442471|gb|EFR60886.1| membrane-bound hydrogenase 1 large subunit [Veillonella sp. oral
taxon 158 str. F0412]
Length = 633
Score = 101 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 3/104 (2%)
Query: 20 AHGVLRLILELDG--EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQE 77
G LR+ +++D VE G RG E + + + + R+ V
Sbjct: 12 IEGHLRVEIKVDEASGKVEDA-LSSGTAWRGIELVAKNRDPRDLWAFVQRICGVCTTTHA 70
Query: 78 HAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A AVE LGI IP IR + + H+++
Sbjct: 71 LASLRAVEDALGITIPKNANYIRNIMHSSLDVHDHIVHFYHLHA 114
Score = 87.3 bits (215), Expect = 4e-15, Method: Composition-based stats.
Identities = 12/93 (12%), Positives = 25/93 (26%), Gaps = 16/93 (17%)
Query: 317 LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QA 367
+ + V+AP+G G ++ + + P + A
Sbjct: 521 KFEPNTWEKDAKGVGLVDAPRGGLGHWIHIK-DGRSANYQCIVPSTWNACPKTAANEHGA 579
Query: 368 MEFLCKGH--QLADVSA----ILGSLDIVFGEV 394
E ++AD ++ S D
Sbjct: 580 YEDSMIDTKVKIADKPLEILKVIHSFDPCLACA 612
>gi|269215938|ref|ZP_06159792.1| periplasmic [NiFe] hydrogenase, large subunit, isozyme 1 [Slackia
exigua ATCC 700122]
gi|269130197|gb|EEZ61275.1| periplasmic [NiFe] hydrogenase, large subunit, isozyme 1 [Slackia
exigua ATCC 700122]
Length = 557
Score = 101 bits (253), Expect = 2e-19, Method: Composition-based stats.
Identities = 41/345 (11%), Positives = 76/345 (22%), Gaps = 80/345 (23%)
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL--- 184
L E + G H PGG + ++D+ D + +
Sbjct: 193 HYLEALEMQGTASEIAAVLGGKMPHVMTLIPGGTMFVPTDQKLDDLKGLIDRLYNWVAAV 252
Query: 185 ---------NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGV--------------- 220
+ + R G + E
Sbjct: 253 AVPDSIALGKFYPEAFNFGAGCR-RYGAWGVFERESFKMADRYMPSGVIELGPDGNYQLS 311
Query: 221 ------MIRGSGAAWDL--RKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKI 272
+ G +W P+E ++ +++ + E
Sbjct: 312 EVEESKITEYVGHSWYSGSEDLPPFEQGVNPEYTEYNTDDRYTWNKCARYDGKPLEMGGA 371
Query: 273 IRQCVNRLLG------------------KNKVGPVSASDPKIVPPKRAD------MKRSM 308
R V + G + P S++ + + MK +
Sbjct: 372 SRVLVAYVRGDKFIKEHVDALLVALGGTPGDLSPFSSTIGRTALRQVETLYVATLMKEWL 431
Query: 309 ----ESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
E++ Y GE EAP+G K +I P +
Sbjct: 432 AELVEAIKGGDSTYFTKSDAVEGEGTGFWEAPRGALYHSEKVK-NGKIQDYQIIIPTTWN 490
Query: 365 L---------QAMEFLCKGHQLADVS------AILGSLDIVFGEV 394
+ ME G + D+ + S D
Sbjct: 491 IAPLDPDGVHGPMEQALIGVPVTDMEKPIHALRTVHSFDPCTACA 535
Score = 89.2 bits (220), Expect = 1e-15, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E++ IV G RG E ++ +T A R+ V P++ HA
Sbjct: 12 IEGHLRVEMEVNDGIVTDA-WVSGGCFRGMELVVRDRTPQDAAQIVQRICGVCPVSHAHA 70
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
++A EK GI IP ++IR + + SH+L + A
Sbjct: 71 ASIAAEKAYGIAIPNSARIIRNMLEGAQFLHSHILWLYNLAALDY 115
>gi|288922437|ref|ZP_06416624.1| nickel-dependent hydrogenase large subunit [Frankia sp. EUN1f]
gi|288346199|gb|EFC80541.1| nickel-dependent hydrogenase large subunit [Frankia sp. EUN1f]
Length = 573
Score = 101 bits (253), Expect = 2e-19, Method: Composition-based stats.
Identities = 41/386 (10%), Positives = 91/386 (23%), Gaps = 105/386 (27%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H + +++ A + L + + + + G H + GG+ I +
Sbjct: 173 HPAYRLSPELNLIAFSHYLDALDFQRDYVRVHALLGGKNPHPQTYVVGGMASPIDLNSQD 232
Query: 172 DI-----GCWCDSFPSALNDISDLLTGN--------RIFKQRNVNIGTVKLEDAWGWG-- 216
I ++ + + + + +G+ + +
Sbjct: 233 AINDNTLQEITQILQRGVDFVEQVFLPDLEAIAGAYPEWTTYGRGLGSYMVFGDYSPSPP 292
Query: 217 ----------FSGVMIR------------------------------GSGAAWDLRKSQP 236
F G +IR +G L +++P
Sbjct: 293 RIARPPRDGLFPGGVIRNGNLTAVEPFDPSGIAESVAHSWFRYEKSDAAGLPPWLGETEP 352
Query: 237 YECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKI 296
+ E F+ + + E + R V G ++ P+
Sbjct: 353 HYTGPEPPFEELDVAGKYTWLKAPRYQGIAVEVGPLARLLVGYGTGDARLRPIVQGALDR 412
Query: 297 VPPKRADMKRSM-------------------------------ESLIHHFKLYTEGYHVP 325
+ + ++ + I + P
Sbjct: 413 LHLPPEALMSTLGRVLARGLETQLMARHALDLVAELRDNVGAGDLAIADTGRWRPTSW-P 471
Query: 326 VG--EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKG 374
G EAP+G +++ ++ + P + A E G
Sbjct: 472 DGTLRGVGFHEAPRGALSHWVVI-ENDRIRNYQAVVPTTWNASPRDADGNPGAYEAALVG 530
Query: 375 HQLAD------VSAILGSLDIVFGEV 394
+AD V L S D
Sbjct: 531 TPVADPHRPLEVLRTLHSFDPCMACA 556
Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 1/100 (1%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +++DG V + RG E ++ + A + R+ V A
Sbjct: 12 VEGHLRVEVQVDGGQVTEA-YASSTMWRGIETILTGRDPRDAWLFAQRICGVCTTVHALA 70
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
AVE +G P +L+R + + + H+++
Sbjct: 71 SVRAVEDAVGAVPPRNARLLRDIIAASLSVHDHVVHFYHL 110
>gi|123747|sp|P17632|MBHL_RHOGE RecName: Full=Uptake hydrogenase large subunit; AltName:
Full=Hydrogenlyase; AltName: Full=Membrane-bound
hydrogenase large subunit
gi|46169|emb|CAA36755.1| hupL protein ((uptake-hydrogenase large subunit) [Rubrivivax
gelatinosus]
Length = 618
Score = 101 bits (253), Expect = 2e-19, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 42/102 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D V R G + RG E +++ + A + +R+ V
Sbjct: 26 IEGHMRCEVNVDANNVIRNAVSTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGCHALT 85
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI IP LIR + ++ ++ H ++
Sbjct: 86 SVRAVEDALGIRIPKNAHLIREMMAKTLQVHDHAVHFYHLHA 127
Score = 95.4 bits (236), Expect = 2e-17, Method: Composition-based stats.
Identities = 24/217 (11%), Positives = 50/217 (23%), Gaps = 16/217 (7%)
Query: 192 TGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGK 251
T + G + R K Y + D
Sbjct: 385 TAIEHIDESAKYSWIKSPRWRGHAVEVGPLSRYILGYAHALKGNKYCQRVKEQVDFAAEA 444
Query: 252 HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESL 311
+ L +++ + R L + G + R+ ++
Sbjct: 445 INHAIPKALGLPETQYTLKQLLPTTIGRTLARCLEGQYCGEMMLADYHELVANIRAGDTA 504
Query: 312 IHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH------- 364
+ + + + V AP+G G ++ K + P +
Sbjct: 505 TANVEKWDPATWPKEAKGVGTVAAPRGMLGHWIRIK-DGKIENYQCVVPTTWNGSPRDAK 563
Query: 365 --LQAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
+ A E G + + + L S D
Sbjct: 564 GQIGAFEASLLGTPMVNPEQPVEILRTLHSFDPCLAC 600
Score = 41.1 bits (95), Expect = 0.32, Method: Composition-based stats.
Identities = 18/149 (12%), Positives = 46/149 (30%), Gaps = 1/149 (0%)
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
++ A+T L + +++ + + G H Y G +
Sbjct: 199 ANLMAVTHYLEALDLQKEWVKVHAIFGGKNPHPNYLVGGVPCAINLDGNGAAGRINMERL 258
Query: 181 PSALNDISDLLTGNRIFKQRNV-NIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
I +++ N+ +V IGT+ + W G + + + + +
Sbjct: 259 NFVKARIDEMIEFNKNVYLPDVLAIGTIYKQAGWLHGGGLSALNVADYGTYDKVAYDHAT 318
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRE 268
+ I G + + +++E
Sbjct: 319 HQLPGGVILDGNWDEIHAIDPRDPEQVQE 347
>gi|225848577|ref|YP_002728740.1| [Ni/Fe] hydrogenase, large subunit [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225643980|gb|ACN99030.1| [Ni/Fe] hydrogenase, large subunit [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 578
Score = 101 bits (253), Expect = 2e-19, Method: Composition-based stats.
Identities = 27/147 (18%), Positives = 45/147 (30%), Gaps = 6/147 (4%)
Query: 20 AHGVLRLILELD-GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G LR+ + LD V + RG E +++ + R+ V
Sbjct: 13 IEGHLRIEVVLDENNRVVDA-YSSSTMWRGIETILKGRDARDCGLIAMRICGVCTGAHYW 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREK 138
AVE LGI P +L+R L + + H+++ AL +
Sbjct: 72 TSIKAVEHALGITPPTNARLVRNLIAGSLYLHDHVVHFYHLH----ALDWVDIVSALKAD 127
Query: 139 LMVFYERASGSRMHAAYFRPGGVHQDI 165
+ A + Y P
Sbjct: 128 PYKAAKEAENYSENPWYNSPTQYKAIQ 154
Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 38/366 (10%), Positives = 72/366 (19%), Gaps = 98/366 (26%)
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A L E + + G H GGV + + + +
Sbjct: 189 ATAHYLEALEAQRWMAQMMAIYGGKNPHPQSIVVGGVTCVQDIKNPARASLFKELLLKSR 248
Query: 185 NDISDL----------------------------------LTGNRIFK-QRNVNIGTVKL 209
+ + L N +K + + G V
Sbjct: 249 DFVLRAYIPDIIMAGQVYKDEALNGVGAGLGNYLVYGDFPLDDNPHYKAKLLFSPGVVVN 308
Query: 210 EDAWGWGFSGVMIRGSGAAWDLRKSQ----PYECYSELDFDIPIGKH---------GDCY 256
+D K + P + G +
Sbjct: 309 KDLTKVIPFDQSKITEDVTHSWYKYENTDKPLHPFDGQTNPNYTGFDENGLLKVNEKYSW 368
Query: 257 DRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIV------------------- 297
+ + E + R V G ++ K
Sbjct: 369 IKSPIYDDIRVEVGPLARMIVGYASGNERIKNYVDKALKAAGLPLQALFSTVGRTAARAI 428
Query: 298 --PPKRADMKRSMESLIHHFKL----------YTEGYHVPVGEVYAAVEAPKGEFGVYLI 345
M ++ L + Y + + Y EAP+G G ++
Sbjct: 429 ETWMISDVMIEWIDQLASNSAKGNLDTWTKFDYDKLTKGKELKGYGLSEAPRGALGHWVR 488
Query: 346 SDGGNKPYRCKIRAPGYAH---------LQAMEFLC--------KGHQLADVSAILGSLD 388
K + P + + A E L ++ + S D
Sbjct: 489 IV-DGKVANYQAVVPSTWNAGPRDYKGRMGAYESSLVSNITLSNPDQPL-EILRTVHSFD 546
Query: 389 IVFGEV 394
Sbjct: 547 PCIACA 552
>gi|295400418|ref|ZP_06810397.1| nickel-dependent hydrogenase large subunit [Geobacillus
thermoglucosidasius C56-YS93]
gi|312111056|ref|YP_003989372.1| nickel-dependent hydrogenase large subunit [Geobacillus sp.
Y4.1MC1]
gi|294977693|gb|EFG53292.1| nickel-dependent hydrogenase large subunit [Geobacillus
thermoglucosidasius C56-YS93]
gi|311216157|gb|ADP74761.1| nickel-dependent hydrogenase large subunit [Geobacillus sp.
Y4.1MC1]
Length = 544
Score = 101 bits (253), Expect = 2e-19, Method: Composition-based stats.
Identities = 33/230 (14%), Positives = 62/230 (26%), Gaps = 25/230 (10%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + + ++ +V + RG E +++ K + R+ + +
Sbjct: 23 VEGDLDVKVAIEDGVVVDA-WTEATMFRGFEMILKGKDPQAGLIVTPRICGICGGSHLTK 81
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD----------------- 122
A++ G E+P LIR + I S
Sbjct: 82 AVYALDTAWGTEVPPNATLIRNIAQAAETIQSIPRWFYALFAIGLTHQNYASSKLYDEVV 141
Query: 123 ----VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
G K + Y G H+++ PGGV + +
Sbjct: 142 RRWAPFEGEHYEIGVTVSAKPVEIYAIFGGQWPHSSFMVPGGVVSAPTLSDITRSIAILE 201
Query: 179 SFPSALNDISDL---LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGS 225
+ + L K N + + + G+ IR S
Sbjct: 202 YYRETWLEKILLGCSAERWLENKSWNDVLAWLDEKPEHRNSDLGLFIRYS 251
Score = 93.5 bits (231), Expect = 6e-17, Method: Composition-based stats.
Identities = 30/224 (13%), Positives = 61/224 (27%), Gaps = 36/224 (16%)
Query: 205 GTVKLEDAWGWGFSGVMIRGSGAAWDLR-KSQPYECYSELDFDIPIGKHGDCYDRYLVRM 263
+ + RGSG + P + + YD
Sbjct: 302 FHDFDQARIREDHTHSFYRGSGVYHPFEGVTDPVDPFEGRKEGKYTFAKAPRYD-IPGIG 360
Query: 264 MEMRESVKIIRQCVNRLLGKNK--------------VGPVSASDPKIVPPKRA----DMK 305
E + RQ + G + +GP + + A M+
Sbjct: 361 ETPLEVGPLARQVIAGRPGAEEWQDYDPLFLNMIKEIGPSAMVRVLARLHEAAKYYLRMR 420
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
++ + + K Y + +P G + A EA +G ++ K ++ P ++
Sbjct: 421 EWLKQIDLNEKFYIKPKELPEGRGFGATEAARGALADWIQIK-DGKIENYQVITPTAWNI 479
Query: 366 ---------QAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
+E G + + ++ I S D
Sbjct: 480 GPRDRHGQRGPIETAMIGVPIKNPEDPVELAHIAQSYDSCLVCT 523
>gi|237750635|ref|ZP_04581115.1| hydrogenase subunit large [Helicobacter bilis ATCC 43879]
gi|229373725|gb|EEO24116.1| hydrogenase subunit large [Helicobacter bilis ATCC 43879]
Length = 587
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 42/101 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D V L RG E +I+ + A R+ V + A
Sbjct: 13 IEGHLRIEVIVDDNNVITDAFSSSTLWRGLETIIKGRDPRDAGFIAGRICGVCTYSHYKA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGIEIP +L+R L + H+++ T
Sbjct: 73 GITAVENALGIEIPYNAKLVRTLMNLALFFHDHIVHFYTLH 113
Score = 83.5 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 12/84 (14%), Positives = 21/84 (25%), Gaps = 18/84 (21%)
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQ 376
G V P+G ++ K + P + E G +
Sbjct: 484 KGCYIGNV--PRGMLSHWVRI-EEGKVANYQAVVPSTWNAGPRDSKGQKGPYEMSLIGTK 540
Query: 377 LAD------VSAILGSLDIVFGEV 394
+AD + + S D
Sbjct: 541 IADLTQPLEIIRHIHSFDPCIACA 564
>gi|315654491|ref|ZP_07907397.1| nickel-dependent hydrogenase [Mobiluncus curtisii ATCC 51333]
gi|315490955|gb|EFU80574.1| nickel-dependent hydrogenase [Mobiluncus curtisii ATCC 51333]
Length = 417
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 54/372 (14%), Positives = 99/372 (26%), Gaps = 38/372 (10%)
Query: 30 LDGEIVE--------RVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYA 81
++G IV + L R + ++ KT L+A+ + L + P+ A
Sbjct: 12 MEGRIVVTHDSSGHPHARFDLQGLPR-VDGMLVGKTALEALKMTEHLCGICPVAHHLAGT 70
Query: 82 LAVEKLLGIEI-PIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLM 140
A++ L G+ QLIR L + +H L Q D G +
Sbjct: 71 RALDALSGLTPLTPAAQLIRRLLHYGSIVEAHSLRFLMQDRDAGV--------ALKRISK 122
Query: 141 VFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL-LTGNRIFKQ 199
A A PGGV + D+ + A + D L +
Sbjct: 123 KMLVAAGSPGHFPATAVPGGVSVWPATPTLCDLSADLATARDAAERLCDAALASSPEAAG 182
Query: 200 RNVNIGTVKL--EDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYD 257
G +D G +R + + + + + + +IP Y
Sbjct: 183 AGDFTGADVALIDDNGAPDVFGTRVRVARNTSAVDEFEFSQWNDRITEEIPGSPAPRPYL 242
Query: 258 RYLVRMMEMRESVKI----------IRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK-- 305
R + R + + + I +
Sbjct: 243 RAEGPENGCYRVGPVAQLSVGTLSTPRAATAQARWLAGGRGAAGARAIITLHVLERTEAL 302
Query: 306 -----RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ +E H + G V+ P+G + +I P
Sbjct: 303 TQQLTQLLEGADHGELVDPATVRFTAGSGTGLVDGPRGILAHTYTIGADGTIAQARILTP 362
Query: 361 GYAHLQAMEFLC 372
+ + L
Sbjct: 363 TAQNEPWLAQLL 374
>gi|213416925|ref|ZP_03350069.1| uptake hydrogenase-1 large subunit [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
Length = 384
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 33/257 (12%), Positives = 64/257 (24%), Gaps = 37/257 (14%)
Query: 173 IGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGV----MIRGSGAA 228
I D D + G G + G
Sbjct: 111 INGRFDEIHPVDLTAPDEIQEFVTHSWYTYGNGNNDKGLHPWDGLTEPQLVMGEHYKGTK 170
Query: 229 WDLRKSQPYECYSELDFDIPIGKHGDCY--DRYLVRMMEM-RESVKIIRQCVN------- 278
+ + YS + G + RYL+ + E + + Q ++
Sbjct: 171 TFIEQVDESAKYSWIKSPRWKGHAMEVGPLARYLIGYHQNKPEFKEPVDQLLSVLKLPKE 230
Query: 279 -------RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYA 331
R + + + + + +S ++ + L+ +
Sbjct: 231 ALFSTLGRTAARALESVWAGNTLQYFFDRLMRNLKSGDTATANVTLWEPDTWPTSAKGVG 290
Query: 332 AVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLA--D- 379
EAP+G G ++ K + P + + A E G +LA D
Sbjct: 291 FSEAPRGALGHWIKI-ENQKIDSYQCVVPTTWNAGPRDDKGQIGAYEAALMGTKLAVPDQ 349
Query: 380 ---VSAILGSLDIVFGE 393
+ L S D
Sbjct: 350 PLKILRTLHSFDPCLAC 366
>gi|224372619|ref|YP_002606991.1| quinone-reactive Ni/Fe-hydrogenase large chain [Nautilia
profundicola AmH]
gi|223588432|gb|ACM92168.1| quinone-reactive Ni/Fe-hydrogenase large chain [Nautilia
profundicola AmH]
Length = 579
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 49/374 (13%), Positives = 89/374 (23%), Gaps = 52/374 (13%)
Query: 20 AHGVLRLILELD-GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G LR+ + +D + L RG E +++ + A R+ V +
Sbjct: 13 IEGHLRVEVVVDENNKITNA-FSSATLWRGIEVILKGRDPRDAGFMTQRICGVCTYSHYK 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV--------------- 123
A AVE LGI+ P+ L R L H+++
Sbjct: 72 AGITAVEDALGIKPPLNALLTRTLMDFALFFHDHIVHFYQLHALDWVDIISALKADPKKA 131
Query: 124 ----------GALTPPLWGFEEREKLMV--FYERASGSRMHAAYFRPGGVHQDIPPELVE 171
G E RE + + + P + +
Sbjct: 132 SEEAFKYVPKGYNPIATGEDELREVQKRVSKFAEKGDLGPFKNGYWGHKTMKFTPEQNLI 191
Query: 172 DIGCWCD--SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMI-----RG 224
+ + + + G Q G + D G +
Sbjct: 192 ALSHYLKTLEMQRIAAQMMAIFGGKNPHPQSLTVGGVTCVMDLQDPARLGEYLTKFQELA 251
Query: 225 SGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKN 284
+ + K M S + + +
Sbjct: 252 DYVNRAYYADIVMAASAYGTEPSVVQKTNLGNFLTYKTMQTGPNSW--LFDACGYIKNHD 309
Query: 285 KVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
+ KI +++++ H + TE E VE GE
Sbjct: 310 LTKFYEIDESKITEEATHSWYKNLDNPTHPYDETTEP------EYTGYVE---GE----- 355
Query: 345 ISDGGNKPYRCKIR 358
DG + K+
Sbjct: 356 SVDGQGNIVKTKVV 369
Score = 97.7 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 46/381 (12%), Positives = 76/381 (19%), Gaps = 101/381 (26%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H T ++ AL+ L E + G H GGV + +
Sbjct: 179 HKTMKFTPEQNLIALSHYLKTLEMQRIAAQMMAIFGGKNPHPQSLTVGGVTCVMDLQDPA 238
Query: 172 DIGCWCDSFPSALNDISDLLTGNRIFKQRNVNI----------GTVKLEDAWGWGFSGVM 221
+G + F + ++ + + G G + +
Sbjct: 239 RLGEYLTKFQELADYVNRAYYADIVMAASAYGTEPSVVQKTNLGNFLTYKTMQTGPNSWL 298
Query: 222 IRGSG-----------------------AAWDLRKSQPYECYSELDFDIPIGKH------ 252
G +W P Y E G
Sbjct: 299 FDACGYIKNHDLTKFYEIDESKITEEATHSWYKNLDNPTHPYDETTEPEYTGYVEGESVD 358
Query: 253 ---------------GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIV 297
+ + E E + VN G KV V
Sbjct: 359 GQGNIVKTKVVNEKGKYSWIKSPRYNEEPMEVGPLACMVVNYAAGNKKVQKVVNEFLAQT 418
Query: 298 PPKRADM---------------------KRSMESLIHHFKL--------YTEGYHVPVGE 328
+ + +L+ + K + G
Sbjct: 419 GLPAEALFTVLGRTAARMLQTKTIADYGLEAFNNLVENLKKDQTTVAPYVIDETKEYKGR 478
Query: 329 VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLAD 379
V P+G + K + P + A E G LAD
Sbjct: 479 FIGDV--PRGMLSHWCRIK-NGKIENWQAVVPSTWNAGPEDGRGKKGAYEANLIGMTLAD 535
Query: 380 ------VSAILGSLDIVFGEV 394
V + S D
Sbjct: 536 PAKPLEVIRSIHSYDPCIACA 556
>gi|332139402|gb|AEE09998.1| [NiFe] hydrogenase large subunit [Desulfovibrio desulfuricans
subsp. desulfuricans]
Length = 466
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 51/351 (14%), Positives = 92/351 (26%), Gaps = 76/351 (21%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDI--PPEL 169
H ++ A T L + + H + GGV P+
Sbjct: 117 HPSYYLEPEANLVATTHYLEALRAQVDIAKGMAVFGAKNPHTQFTVAGGVTCYEALTPQR 176
Query: 170 VEDIGCWCDSFPSALNDIS--DLLTGNRIFKQRNVNIGTVKLE----------------D 211
+++ + + + DLL +K GT
Sbjct: 177 IKEFRELYKKARTFIEQVYIPDLLMVAGQYKDWAAIGGTDNFMAFGEFPAAGGERDLNSR 236
Query: 212 AWGWGFSGVMIRGSGAAWDLRKSQ---------------PYECYSELDFDIPIGKHGDCY 256
+ G GS +D K + PYE ++ F +
Sbjct: 237 WYKPGVIYDRKIGSVQPFDPSKIEEHVRHSWYEGDKARTPYEGETKPFFTKMGDTDRYSW 296
Query: 257 DRYLVRMMEMRESVKI-------------IRQCVNRLLGKNKVGPVSASDPKIVPPKR-- 301
+ + E+ + I+ V+ +L VGP + R
Sbjct: 297 LKAPRYAGQSMETGPLAQVLVAYAQNHKTIKPAVDGVLKALNVGPEALFSTLGRTAARGI 356
Query: 302 ---------ADMKRSMESLIHHFKLYTEGYHVPV-GEVYAAVEAPKGEFGVYLISDGGNK 351
+ E+ I K E Y VP + ++AP+G ++ K
Sbjct: 357 QTLVIAQQTENWLNEYENNIGKDKQIVEDYAVPANAKGVGFLDAPRGGLSHWIRI-EEGK 415
Query: 352 PYRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VSAILGSL 387
++ P +L A E G +AD + + S
Sbjct: 416 IGNFQLVVPTTWNLGPRDAKGVMGAAEHALVGTPVADPKRPVEILRTIHSF 466
Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 18/58 (31%)
Query: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
R V A A+E + IP IR L + + HL++
Sbjct: 1 RTCGVCTYTHALASTRALEDAINKPIPANATYIRNLVMAMQFMHDHLVHFYHLHALDF 58
>gi|74356062|dbj|BAE44401.1| hydrogen-uptake [NiFe] hydrogenase large subunit [Hydrogenimonas
thermophila]
Length = 552
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 2/102 (1%)
Query: 20 AHGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G LR+ +D + + RG E +++ + R+ V +
Sbjct: 13 IEGHLRIEAVIDDNNTIVDA-FSSSTMFRGIETILKGRDPRDCGLLAMRICGVCTVTHYQ 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE GI IP +++R L + HL++
Sbjct: 72 RSIEAVEHAFGITIPKNARIVRNLMQGALFLHDHLVHFYHLH 113
Score = 97.7 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 42/359 (11%), Positives = 77/359 (21%), Gaps = 94/359 (26%)
Query: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIP------PELVEDIGCWCDSF 180
T L + + + G H GGV L +D+ F
Sbjct: 195 THYLQALDLQRNVSKMIAIFGGKDPHPQSIVVGGVTCVDDIKSSARRALFKDLHLEFRRF 254
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWG--------FSGVMIRGSG------ 226
+ + + +G G ++G M+ G
Sbjct: 255 IKQAYLPDIYMISSAYADEARAGVGAGLKNFLVYGGFRLDDNPMYNGEMLFPGGLVLNGD 314
Query: 227 ----AAWDLRKS---------------QPYECYSELDFDIPIGKH----------GDCYD 257
+D K PY+ +E ++ K +
Sbjct: 315 LSSAIDFDPSKVTEDVTHAWYSGSSNLHPYDGVTEPNYTGFGRKENGIAYLDTAGKYSWI 374
Query: 258 RYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASD---------------------PKI 296
+ + E + R V G +
Sbjct: 375 KSPLYDDTRVEVGPLARMAVGMARGDALISDYVTKFLTNSGLPTEALFSSVGRTAARAIE 434
Query: 297 VPPKRADMKRSMESLIHHFKLYTEGYHVP--------VGEVYAAVEAPKGEFGVYLISDG 348
M ++ L + P Y EAP+G G ++
Sbjct: 435 TELLADVMVDWIDELSANVASGDIKTTTPFDFNRVSQNARGYGIEEAPRGALGHWVRI-Q 493
Query: 349 GNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VSAILGSLDIVFG 392
K + P + A E G +++D + + S D
Sbjct: 494 NGKVANYQAVVPSTWNAAPRDYKERKGAYEESLIGLKVSDPDQPLEILRTVHSFDPCIA 552
>gi|291277203|ref|YP_003516975.1| Ni/Fe-hydrogenase large subunit [Helicobacter mustelae 12198]
gi|290964397|emb|CBG40247.1| Ni/Fe-hydrogenase large subunit [Helicobacter mustelae 12198]
Length = 578
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 44/101 (43%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D V L RG E +I+ + A R+ V + A
Sbjct: 13 IEGHLRIEVIVDENNVITDAFSSSTLFRGLETIIKGRDPRDAGFIAQRICGVCTFSHYKA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+AVE LGI+ P+ Q++R L + + H+++ T
Sbjct: 73 GVMAVEDALGIKPPLNAQMVRSLMNISLMLHDHVVHFYTLH 113
Score = 85.0 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 47/382 (12%), Positives = 87/382 (22%), Gaps = 103/382 (26%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H T ++ L+ L E + +L + H GGV +
Sbjct: 176 HKTYHFTPEQNLIVLSHYLKLLEIQRELAKMMAIFGAKQPHPQSLTVGGVTSVMDILDPT 235
Query: 172 DIGCWCDSFPSALN-----DISDLLTGNRIFKQRN----------------VNIGTVKLE 210
+G W F + +DL+ R F + + IG +
Sbjct: 236 RLGEWKAKFDMVCDFVHHAYYADLVMAGRAFNKEQSVLKGCNLKNFISHAEMQIGPNEFL 295
Query: 211 DAWGWGFSGVMIRGSGAA-----------WDLRKS------QPYECYSELDFDI------ 247
G G + R W ++ PY + ++
Sbjct: 296 FTTGVVLDGDLSRVHPIDENLIKEEVTNSWYKYENTNEVALHPYVGQTNPNYTGFKDGKS 355
Query: 248 --PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK----- 300
P GK D + +S + + + V ++ +P I P
Sbjct: 356 LGPEGKMVDSKLLDMKGKYSWIKSPRYNELPMEVGPLASVVVGLAGKNPYITPVATQFLK 415
Query: 301 ------------------------------RADMKRSMESLIHHFKLYTEGYHVPV---- 326
+ +E+L
Sbjct: 416 DTGLPIEALFSTLGRTAARCIEAVVICNHGAKAFETLVENLKSDHSTCAPYIIDKNKEYQ 475
Query: 327 GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQL 377
G V P+G ++ + P + A E G ++
Sbjct: 476 GRYIGNV--PRGMLSHWVRIK-NGIVENYQAVVPSTWNAGPRDHKGLQGAFETSLIGTKI 532
Query: 378 AD------VSAILGSLDIVFGE 393
D + + S D
Sbjct: 533 VDLTKPLEIIRTIHSFDPCIAC 554
>gi|15606078|ref|NP_213455.1| hydrogenase large subunit [Aquifex aeolicus VF5]
gi|2983267|gb|AAC06861.1| hydrogenase large subunit [Aquifex aeolicus VF5]
Length = 633
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 29/275 (10%), Positives = 67/275 (24%), Gaps = 41/275 (14%)
Query: 159 GGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
GV +D + + + + + +K + G + ++
Sbjct: 337 NGVVEDFYKGVEKAKFYNLEGKDFTDPEQIQEFVTHSWYKYPDETKGLHPWDGITEPNYT 396
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMM---------EMRES 269
G L ++ Y + + G +V + E
Sbjct: 397 GPKEGTKTHWKYLDENGKYSWIKAPRWRGKACEVGPLARYIIVYTKVKQGHIKPTWVDEL 456
Query: 270 VKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK------RSMESLIHHFK------- 316
+ V+++L + + + + M+ L + K
Sbjct: 457 IVNQIDTVSKILNLPPEKWLPTTVGRTIARALEAQMSAHTNLYWMKKLYDNIKAGDTSVA 516
Query: 317 ---LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ------- 366
+ + EAP+G G ++I K + P +
Sbjct: 517 NMEKWDPSTWPKEAKGVGLTEAPRGALGHWVIIK-DGKVANYQCVVPTTWNGSPKDPKGQ 575
Query: 367 --AMEFLCKGHQLA------DVSAILGSLDIVFGE 393
A E ++ +V + S D
Sbjct: 576 HGAFEESMIDTKVKVPEKPLEVLRGIHSFDPCLAC 610
Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 3/104 (2%)
Query: 20 AHGVLRLILELDGEI--VERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQE 77
G LR+ + +D E V+ G + RG E ++ + + R+ V
Sbjct: 12 IEGHLRIEIMVDEETGQVKDA-LSAGTMWRGIELIVRNRDPRDVWAFTQRICGVCTSIHA 70
Query: 78 HAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A AVE L I IP IR + ++ H+++
Sbjct: 71 LASLRAVEDALEITIPKNANYIRNIMYGSLQVHDHVVHFYHLHA 114
>gi|25069935|gb|AAN65267.1| bidirectional hydrogenase large subunit [Anabaena siamensis TISTR
8012]
Length = 382
Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats.
Identities = 48/383 (12%), Positives = 95/383 (24%), Gaps = 71/383 (18%)
Query: 75 NQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV----------- 123
+ A A +++L + IP +R L + + SH L+ +
Sbjct: 1 SHLLASAKTGDRILAVTIPKAATKLRRLMNLGQIVQSHALSFFHLSAPDLLLGMDSDPTK 60
Query: 124 --------GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGC 175
G R+ E G ++H ++ PGGV + + I
Sbjct: 61 RNVFGLIASDPELARGGIRLRQFGQEIIELLGGKKIHPSWAVPGGVSDPLTEQNRTHIQN 120
Query: 176 WCDSFPSALNDISDLLTGN-RIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAW----- 229
+ + + L G + +++ G G+ G
Sbjct: 121 RIPEARTTVINAIALFKGLLKDYEKEAQTFGNFPSLFMGLVTPEGLWETYDGHLRFVDSA 180
Query: 230 -----------------------DLRKSQPY---ECYSELDFDIPIGKHGDCYDRYLVRM 263
D PY Y + +
Sbjct: 181 GNIVADNLDPANYHDFLGEAVQADSYLKSPYYRPLGYPDSSDHCRLDSGMYRVGPLARLN 240
Query: 264 MEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM--KRSMESLIHHFKLYTEG 321
+ R + Q + G V +S + +E L+ + +
Sbjct: 241 ICNRIGTPLADQELKEFRSYG-SGTVKSSFFYHYARLIEILASIEHIEILLDDPDILSTR 299
Query: 322 YHVPVG----EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME-------- 369
G E EAP+G + D + + + AM
Sbjct: 300 LRAEAGINQLEAVGVSEAPRGTLFHHYRVDEDGLMQKVNLIIATGQNNLAMNRTVAQIAR 359
Query: 370 FLCKGHQLAD-----VSAILGSL 387
+G ++ + V A + +
Sbjct: 360 HFIQGTEIKEGMLNRVEAGIRAF 382
>gi|323097793|emb|CBJ18457.1| [Ni/Fe] hydrogenase [uncultured bacterium]
Length = 426
Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats.
Identities = 20/102 (19%), Positives = 35/102 (34%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +D V R + RG E +++ + A R+ V
Sbjct: 73 IEGHLRIEAVIDDNNVIREAYASSTMFRGIETILKGRDPRDAGLLAMRICGVCTGTHYQR 132
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE + IP +++R L + H ++
Sbjct: 133 SIEAVEHAFNVTIPKNARIVRNLLQGALYLHDHTVHFYHLHA 174
>gi|238790267|ref|ZP_04634041.1| Hydrogenase-2 large chain [Yersinia frederiksenii ATCC 33641]
gi|238721617|gb|EEQ13283.1| Hydrogenase-2 large chain [Yersinia frederiksenii ATCC 33641]
Length = 528
Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 37/387 (9%), Positives = 78/387 (20%), Gaps = 93/387 (24%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYF--- 156
L H +++ A+ L E + G H
Sbjct: 126 GQLGIFANGYWGHPAMALPPEVNLIAVAHYLQALECQRDANRIVAVLGGKTPHIQNLAVG 185
Query: 157 -RPGGVHQDIP-----------PELVEDIGCWCDSFPSALNDIS--------------DL 190
++ D+P ++ +G + + + D
Sbjct: 186 GVANPINLDMPSVLNLERLMLVKSFIDRLGSFIEQVYKVDTAVIAAHYPDWLNLGKGADY 245
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRG-----------SGAAWDLRKSQPYEC 239
+ G ++ SG + +P
Sbjct: 246 YLSVPELPIDRKGETFLLPGGYLENGTFRPIVNHNDPYLIKGIAESGKHAWYKDDEPLAP 305
Query: 240 YSELDFDIPIGKHGD---CYDRYLVRMMEMRESVKIIR---------------------- 274
+ G D + + + E +
Sbjct: 306 WEGKTNPNYTGWQEDGKYSWVKAPTFYGKTVEVGPLAWLMCGIAADHGPTKQHFNDIGAA 365
Query: 275 ------QCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV-- 326
Q + + +G + ++ + + E + P
Sbjct: 366 YHTLSGQSIRAEQLPSTLGRIIGRAVHCCVLHETLAQQWTALVTNIGTGDVETFIKPDIP 425
Query: 327 --GE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCK 373
GE EAP+G +++ K + P + E
Sbjct: 426 LTGEIRGVGFEEAPRGMLSHWVVIK-DGKIANYQAVVPSTWNAGPRNYNDEPGPYEQALV 484
Query: 374 GHQLAD------VSAILGSLDIVFGEV 394
G +AD V + S D
Sbjct: 485 GTPVADPAKPLEVVRTIHSFDPCMSCA 511
Score = 86.9 bits (214), Expect = 5e-15, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 33/77 (42%)
Query: 45 LHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYS 104
+ RG E++++ A R+ V A AVE LG+E+P+ Q IR L
Sbjct: 1 MWRGMEEILQGNDPRDAWMIVQRICGVCTTIHAIASVRAVENSLGMEVPVNAQHIRNLIL 60
Query: 105 EIGRILSHLLNVTTQAM 121
I H+++ +
Sbjct: 61 AAHSIHDHIVHFYQLSA 77
>gi|213964903|ref|ZP_03393102.1| putative reducing hydrogenase alpha subunit [Corynebacterium
amycolatum SK46]
gi|213952439|gb|EEB63822.1| putative reducing hydrogenase alpha subunit [Corynebacterium
amycolatum SK46]
Length = 454
Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 65/418 (15%), Positives = 116/418 (27%), Gaps = 54/418 (12%)
Query: 16 QHPAAHG---VLRLILEL---DGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
QH L++ D + +V + L R + ++ K L RL
Sbjct: 10 QHIQLDELVDPFEARLDVYRDDNGAITQVSFDLSGLPR-IDGMLVGKRALDVPDITKRLC 68
Query: 70 YVAPMNQEHAYALAVEKLLGI-EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
+ P+ A AVE L GI +IP QLIR L + + + + +
Sbjct: 69 GLCPVVHHLAGVRAVEDLYGISDIPRTAQLIRELLAAGSTLDN---------LATKFVAV 119
Query: 129 PLWGFEEREKLMVFYERASGSRMH-AAYFRPGGVHQDIPPELVEDIGCWCDSFPS----- 182
G ++ RA+G+ H PGGV + LV + ++
Sbjct: 120 DREGARAMKRAGKALMRAAGAPSHFPDVAVPGGVRAAVDKTLVSEAEGALEALAETAVIK 179
Query: 183 ----------------ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSG 226
+ L +G + + +
Sbjct: 180 EVELLAAPDAPDAPDAWTDTFDGLDVAVVDADGELAPLGNYLAVARHHTDTAAQIFPAAD 239
Query: 227 AAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKV 286
+R+S+P + FD D + + + RQ V G +
Sbjct: 240 WPTRVRESRPGDAAPRPMFDASKELVKDGCA---GQREDFYRVGPVSRQVVVDKRGISPR 296
Query: 287 GPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGE------VYAAVEAPKGEF 340
V + + E L H + + ++ P+G
Sbjct: 297 DAQRQLLADTVAWAK-RVLADGELLGDHVCDPKAVTAIENADFEGHRSGVGMIDGPRGLL 355
Query: 341 GVYLISDGGNKPYRCKIRAPGYAHLQAM-----EFLCKGHQLADVSAILGSLDIVFGE 393
+ C+I P + + E LC G + A V + + D
Sbjct: 356 VHRYTAGADGIITDCQIMTPTAQNEPWLTRMLTEQLCDGGETAGVEKSIWAADPCLPC 413
>gi|156352295|ref|XP_001622694.1| hypothetical protein NEMVEDRAFT_v1g140171 [Nematostella
vectensis]
gi|156209292|gb|EDO30594.1| predicted protein [Nematostella vectensis]
Length = 52
Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 45/52 (86%), Positives = 48/52 (92%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
TINFGPQHPAAHGVLRL+LELDGE+V R DPHIGLLHRGTEKLIE KT+LQ
Sbjct: 1 MTINFGPQHPAAHGVLRLVLELDGEVVVRADPHIGLLHRGTEKLIEYKTYLQ 52
>gi|307721229|ref|YP_003892369.1| nickel-dependent hydrogenase large subunit [Sulfurimonas
autotrophica DSM 16294]
gi|306979322|gb|ADN09357.1| nickel-dependent hydrogenase large subunit [Sulfurimonas
autotrophica DSM 16294]
Length = 565
Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 23/105 (21%), Positives = 43/105 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR +E+D + V + G L RG E +++ + A R+ V + A
Sbjct: 13 IEGHLRAEIEVDEDGVVKDAYVSGQLFRGIEMILKGRDPRDAGLLAGRICGVCTNSHFRA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
+VE +++P ++IR L + I H+++
Sbjct: 73 AVTSVEDAYSLKLPKNAEIIRDLMAMALFIQDHVVHFYHLHSLDF 117
Score = 93.5 bits (231), Expect = 5e-17, Method: Composition-based stats.
Identities = 45/373 (12%), Positives = 89/373 (23%), Gaps = 91/373 (24%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H+ T ++ ++ L + + + G H GGV +
Sbjct: 176 HVDYKLTPEQNLIMISHYLEALKFQTNISKAVAIFGGKTPHPQSIVVGGVTSVADMLNPQ 235
Query: 172 DIGCWCDSFPSALNDISDLLTGNRIFKQ----------------RNVNIGTVKLEDAWGW 215
+ + A + I + +++G + E
Sbjct: 236 RLNDYLFIIKEAKDFIERAYLPDAKLLSIAYRDEVKAGIGRANGNFLSVGGYEFEGERKL 295
Query: 216 GFSGVMIRGS----------------GAAWDLRKS-----QPYECYSELDFDIPIGK--- 251
GV+ AW K + Y E+ +
Sbjct: 296 FCDGVIYNHDFETIEDFDETKITEEVDRAWYKDKMNGNVREGTLGYDEVHYTDLNEDGSL 355
Query: 252 ------HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM- 304
+ + + ES + R ++ + K + D+
Sbjct: 356 KTAKNSDKYSWVKAPRYNGKTMESGPLARVLISYTKDNTLIKSFVDEFLKETDLELMDLS 415
Query: 305 -------KRSMES-------------LIHHFKLYTEGYHVP--------VGEVYAAVEAP 336
R++E+ LI + K Y V + A E P
Sbjct: 416 TTVGRNAARAIETNYICEYIFKLVSRLIQNIKYYDTDTWVKFDFNSLEKEAKGRAFFEVP 475
Query: 337 KGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VS 381
+G ++ + + AP + A E G ++ D V
Sbjct: 476 RGVLSHFINIK-NARIENFSVIAPTTWNATPRNFDGLRGAYEEALVGLKIEDTSKPLEVL 534
Query: 382 AILGSLDIVFGEV 394
+L S D
Sbjct: 535 RVLHSFDPCLACA 547
>gi|322378994|ref|ZP_08053397.1| quinone-reactive Ni/Fe hydrogenase HydB [Helicobacter suis HS1]
gi|322380416|ref|ZP_08054620.1| quinone-reactive Ni/Fe hydrogenase, large subunit [Helicobacter
suis HS5]
gi|321147155|gb|EFX41851.1| quinone-reactive Ni/Fe hydrogenase, large subunit [Helicobacter
suis HS5]
gi|321148486|gb|EFX42983.1| quinone-reactive Ni/Fe hydrogenase HydB [Helicobacter suis HS1]
Length = 582
Score = 100 bits (250), Expect = 4e-19, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 42/101 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D V L RG E +I+ + A R+ V + A
Sbjct: 13 IEGHLRIEVVVDDHNVITDAFSSSTLFRGLETIIKNRDPRDAGFIAQRICGVCTYSHYKA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI P+ QL+R + + + H+++ T
Sbjct: 73 GVSAVEDALGIVPPLNAQLVRSMMNIALLLHDHVVHFYTLH 113
Score = 84.6 bits (208), Expect = 3e-14, Method: Composition-based stats.
Identities = 40/381 (10%), Positives = 80/381 (20%), Gaps = 102/381 (26%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H + ++ L+ L + + + H GG+ +
Sbjct: 176 HATYHFSPEQNLIVLSHYLKLLAIQREAAKMTAIFGAKQPHPQSLTVGGITSVMDVLDPT 235
Query: 172 DIGCWCDSFPSALN-----DISDLLTGNRIFKQR---NVNIGTVKLEDAWGWGFS-GVMI 222
+G W F + + +D++ F + G S G +
Sbjct: 236 RLGEWKSKFETVKDFVERAYYADIVMAAGSFNKEQSVLKGCGLKNFIAHEEILLSKGKYL 295
Query: 223 RGSGA-----------------------AWDLRKS-----QPYEC-----YSELDFDIPI 249
SG +W + PY+ Y+ +
Sbjct: 296 LSSGVVLNGDLNTLHKIDEKLIKEEVTHSWYQYEGKEIQLHPYDGQTNPHYTGFKDGQSV 355
Query: 250 GKHG-------------DCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKI 296
G G + + E + V V+ K
Sbjct: 356 GMDGKMVNSKVLDTQNKYSWIKSPRYNGLPMEVGPLASLVVGLAAKNPHTTKVAQQFLKD 415
Query: 297 VPPKRADMKRSM-------------------------ESLIHHFKLYTEGYHVPV----G 327
+ ++ E+L Y G
Sbjct: 416 THLPIEAIFSTLGRTAARCLESKILVENGLQTLNSLVENLKSDQSTCAPYYIDKNKEYQG 475
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA---------MEFLCKGHQLA 378
V P+G ++ + P + A E G ++A
Sbjct: 476 RYIGQV--PRGMLSHWVRIK-NGVVANYQAVVPSTWNGGARDSKGQKGPYEMSLIGTKIA 532
Query: 379 D------VSAILGSLDIVFGE 393
+ + + S D
Sbjct: 533 NLTQPLEIIRTIHSFDPCIAC 553
>gi|288923854|ref|ZP_06417937.1| nickel-dependent hydrogenase large subunit [Frankia sp. EUN1f]
gi|288344793|gb|EFC79239.1| nickel-dependent hydrogenase large subunit [Frankia sp. EUN1f]
Length = 145
Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 1/100 (1%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +++DG V + RG E ++ + A + R+ V A
Sbjct: 12 VEGHLRVEVQVDGGQVTEA-YASSTMWRGIETILTGRDPRDAWLFAQRICGVCTTVHALA 70
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
AVE +G P +L+R + + + H+++
Sbjct: 71 SVRAVEDAVGAVPPRNARLLRDIIAASLSVHDHVVHFYHL 110
>gi|213864824|ref|ZP_03386943.1| uptake hydrogenase-1 large subunit [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
Length = 253
Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats.
Identities = 27/233 (11%), Positives = 53/233 (22%), Gaps = 53/233 (22%)
Query: 213 WGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI------GKHGDCYDRYLVRMMEM 266
W G G ++P E + +
Sbjct: 4 HSWYTYGNGNNDKGLHPWDGLTEPQLVMGEHYKGTKTFIEQVDESAKYSWIKSPRWKGHA 63
Query: 267 RESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM------------------ 308
E + R + K + ++ + + ++
Sbjct: 64 MEVGPLARYLIGYHQNKPEFKEPVDQLLSVLKLPKEALFSTLGRTAARALESVWAGNTLQ 123
Query: 309 ---ESLIHHFK----------LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRC 355
+ L+ + K L+ + EAP+G G ++ K
Sbjct: 124 YFFDRLMRNLKSGDTATANVTLWEPDTWPTSAKGVGFSEAPRGALGHWIKI-ENQKIDSY 182
Query: 356 KIRAPGYAH---------LQAMEFLCKGHQLA--D----VSAILGSLDIVFGE 393
+ P + + A E G +LA D + L S D
Sbjct: 183 QCVVPTTWNAGPRDDKGQIGAYEAALMGTKLAVPDQPLKILRTLHSFDPCLAC 235
>gi|60417414|emb|CAI40965.1| putative NADH dehydrogenase subunit 7 [Nyctotherus ovalis]
Length = 111
Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats.
Identities = 52/110 (47%), Positives = 78/110 (70%), Gaps = 1/110 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
+HGVLRL++ + GE+V ++DPHIG LHRGTE+L+E +++ A + DRLDY + Q HA
Sbjct: 1 SHGVLRLVIVIIGEVVTKLDPHIGFLHRGTERLVEEHSYMNAAVFMDRLDYTTVLTQTHA 60
Query: 80 YALAVEKL-LGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
Y LAVE+ + IR QL+R ++ E+ RIL+HLL++ T A+D+G +
Sbjct: 61 YCLAVEQALAKSRLCIRTQLLRTIFDELSRILNHLLSIATHALDIGTMAM 110
>gi|296271581|ref|YP_003654212.1| nickel-dependent hydrogenase large subunit [Arcobacter nitrofigilis
DSM 7299]
gi|296095756|gb|ADG91706.1| nickel-dependent hydrogenase large subunit [Arcobacter nitrofigilis
DSM 7299]
Length = 554
Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats.
Identities = 29/160 (18%), Positives = 54/160 (33%), Gaps = 9/160 (5%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR +E+D + + G L RG E +++ + A R+ V +
Sbjct: 12 IEGHLRAEVEVDENGIVKEAYVSGQLFRGIEIILQNRDPRDAGLLAGRVCGVCTNSHFRG 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKL 139
AVE + IP ++IR L S I H+++ + + +E
Sbjct: 72 AINAVENAYSLSIPENAKIIRDLMSMALFIQDHVVHFYQLHLLDFVDVLSVLKANPKETT 131
Query: 140 MVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
H +P ++E + + D+
Sbjct: 132 KE---------AHKYCQKPFRNSNTHYEAVLEKLQNFIDA 162
Score = 95.0 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 46/349 (13%), Positives = 85/349 (24%), Gaps = 81/349 (23%)
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
L+ + + K+ G H GG+ + + + A +
Sbjct: 189 LSHYFEALQFQTKISKAIAIFGGKTPHPQSLVVGGITSVADMLNPQRLNDFIFVIKEASD 248
Query: 186 DISDLLTGNRIFKQ----------------RNVNIGTVKLEDAWGWGFSGVMIRGSG--- 226
I+ + +++G + GV+
Sbjct: 249 FINRAYLPDMKLLAIAYKDEIKSKSGKTAGNFLSVGGYPINKEMKLFSGGVIFEQDFSNI 308
Query: 227 ---------------AAWDLRKSQPYECYSELDFDIPIGKHGD--CYDRYLVRMMEMRES 269
D K +P+ D + D + + + E+
Sbjct: 309 QEFDADKIKEEVQRAWYSDDEKQEPFYTDLNDDGTLKTKNKDDKYSWIKAPRYDGKTMET 368
Query: 270 VKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM--------KRSMES----------- 310
+ R ++ L + K K D R++ES
Sbjct: 369 GPVARLFISYLNNNTAINSFVDEFLKETSLKLEDFNSTVGRNCARAIESQYICEYIFKLV 428
Query: 311 --LIHHFKLYTEGYH--------VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
LI + K Y Y +E P+G + +K +I AP
Sbjct: 429 SNLIQNIKYYDTNTWDKYNFSELEKDASGYIFLEVPRGVLLHSINI-ENSKIKNYQIIAP 487
Query: 361 GYAHL---------QAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
+ A E G ++AD V +L S D
Sbjct: 488 TTWNATPKNSDGIRGAYEEALVGIKIADTSKPLEVLKVLHSFDPCLACA 536
>gi|182678136|ref|YP_001832282.1| nickel-dependent hydrogenase large subunit [Beijerinckia indica
subsp. indica ATCC 9039]
gi|182634019|gb|ACB94793.1| nickel-dependent hydrogenase large subunit [Beijerinckia indica
subsp. indica ATCC 9039]
Length = 605
Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 43/102 (42%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D + + R G + RG E +++ + A + +R+ V A
Sbjct: 26 IEGHMRCEVNVDADNIIRNAVSTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGCHALA 85
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE L I IP LIR + S++ H+++
Sbjct: 86 SVRAVEDALDIRIPYNAFLIRQIMSKVLAWHDHVVHFYHLHA 127
Score = 91.9 bits (227), Expect = 2e-16, Method: Composition-based stats.
Identities = 12/93 (12%), Positives = 24/93 (25%), Gaps = 16/93 (17%)
Query: 317 LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA---------HLQA 367
+ + V AP+G G ++ + + P ++ A
Sbjct: 497 KWDPSTWPKEAKGVGLVAAPRGGLGHWIKIR-DGRIENYQCVVPSTWNSGPRDAKGNIGA 555
Query: 368 MEFLCKGHQLAD------VSAILGSLDIVFGEV 394
E G + + + L S D
Sbjct: 556 FEASLLGTPMVNPEQPVEILRTLHSFDPCMACA 588
>gi|282850485|ref|ZP_06259864.1| nickel-dependent hydrogenase [Veillonella parvula ATCC 17745]
gi|282579978|gb|EFB85382.1| nickel-dependent hydrogenase [Veillonella parvula ATCC 17745]
Length = 633
Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 3/104 (2%)
Query: 20 AHGVLRLILELDG--EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQE 77
G LR+ +++D VE G RG E + + + + R+ V
Sbjct: 12 IEGHLRVEIKVDEASGKVEDA-LSSGTAWRGIELVAKDRDPRDLWAFVQRICGVCTTTHA 70
Query: 78 HAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A AVE LGI IP IR + + H+++
Sbjct: 71 LASLRAVEDALGITIPKNANYIRNIMHSSLDVHDHIVHFYHLHA 114
Score = 86.9 bits (214), Expect = 5e-15, Method: Composition-based stats.
Identities = 12/93 (12%), Positives = 25/93 (26%), Gaps = 16/93 (17%)
Query: 317 LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QA 367
+ + V+AP+G G ++ + + P + A
Sbjct: 521 KFEPNTWDKDAKGVGLVDAPRGGLGHWIHIK-DGRSANYQCIVPSTWNACPKTAANEHGA 579
Query: 368 MEFLCKGH--QLADVSA----ILGSLDIVFGEV 394
E ++AD ++ S D
Sbjct: 580 YEDSMIDTHVKIADKPLEILKVIHSFDPCLACA 612
>gi|269798247|ref|YP_003312147.1| nickel-dependent hydrogenase large subunit [Veillonella parvula DSM
2008]
gi|294793979|ref|ZP_06759116.1| nickel-iron hydrogenase, large subunit [Veillonella sp. 3_1_44]
gi|269094876|gb|ACZ24867.1| nickel-dependent hydrogenase large subunit [Veillonella parvula DSM
2008]
gi|294455549|gb|EFG23921.1| nickel-iron hydrogenase, large subunit [Veillonella sp. 3_1_44]
Length = 633
Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 3/104 (2%)
Query: 20 AHGVLRLILELDG--EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQE 77
G LR+ +++D VE G RG E + + + + R+ V
Sbjct: 12 IEGHLRVEIKVDEASGKVEDA-LSSGTAWRGIELVAKDRDPRDLWAFVQRICGVCTTTHA 70
Query: 78 HAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A AVE +GI IP IR + + H+++
Sbjct: 71 LAALRAVEDAIGITIPKNANYIRNIMHSSLDVHDHIVHFYHLHA 114
Score = 86.5 bits (213), Expect = 6e-15, Method: Composition-based stats.
Identities = 12/93 (12%), Positives = 25/93 (26%), Gaps = 16/93 (17%)
Query: 317 LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QA 367
+ + V+AP+G G ++ + + P + A
Sbjct: 521 KFEPNTWDKDAKGVGLVDAPRGGLGHWIHIK-DGRSANYQCIVPSTWNACPKTAANEHGA 579
Query: 368 MEFLCKGH--QLADVSA----ILGSLDIVFGEV 394
E ++AD ++ S D
Sbjct: 580 YEDSMIDTHVKIADKPLEILKVIHSFDPCLACA 612
>gi|38233280|ref|NP_939047.1| putative uptake hydrogenase large subunit [Corynebacterium
diphtheriae NCTC 13129]
gi|38199539|emb|CAE49190.1| Putative uptake hydrogenase large subunit [Corynebacterium
diphtheriae]
Length = 581
Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats.
Identities = 25/132 (18%), Positives = 50/132 (37%), Gaps = 2/132 (1%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ LE DG+ + RG E +++ + + R+ V A
Sbjct: 13 IEGHLRIELERDGKNISNA-WSETTQFRGIETIVKGRDPRDVWAFVGRICGVCTSTHSVA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKL 139
+AVE +G ++P + +LIR + I H+++ + + + +K
Sbjct: 72 AVMAVENAIGSQVPKQAELIRDILLGAQEIHDHVVHFYHLHA-LDWVNVVSAADADPKKA 130
Query: 140 MVFYERASGSRM 151
+ F +
Sbjct: 131 VEFANKIGSKWK 142
Score = 86.5 bits (213), Expect = 7e-15, Method: Composition-based stats.
Identities = 41/393 (10%), Positives = 83/393 (21%), Gaps = 109/393 (27%)
Query: 110 LSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE- 168
H ++ A++ L E + ++ G H + G P +
Sbjct: 173 WDHPDYRLPAEANLMAVSHYLDALEFQRSIIRITTIFGGKNPHPNFLVGGMACNIDPNKS 232
Query: 169 ------LVEDIGCWCDSFPSALND--ISDLLTGNRIFKQRNV-------NIGTVKLEDAW 213
++ I W D + + D + +K + +
Sbjct: 233 ETFNQVQLDQIKDWTDEIQEFVKECYYPDAVAIMGAYKDYFKIGASSPNFLAIGMAGTRY 292
Query: 214 GWGFSGVMIRGSGAAW--------DLRKSQP--------------YECYSELD------- 244
G G S D K P Y D
Sbjct: 293 AGGVVGTPRSHSNRDIKPGVILDGDYSKVHPLDHDKIREYISSAWYSYEEGDDAGLQPLV 352
Query: 245 -------------FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSA 291
+ + + + + R + G +
Sbjct: 353 GETTVNYTGPTPPYTWLADDDKYTWSKAPRYDGRPTQVGPVARVLSAYIQGHAHTRKLVD 412
Query: 292 SDPKIVPPKRADM--------KRSMESL------------------------IHHFKLYT 319
+ V + D+ R++E++ + +
Sbjct: 413 DALRSVDMQVKDLNSTAGRTLARAIEAITTADHMAVDLLPAFVQGIVGGDYEVFDSSKWE 472
Query: 320 EGYHVPVG-EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA---------HLQAME 369
+ + +E +G G Y+ K R + P ++ E
Sbjct: 473 PDTWPKEASDGFGLMEVARGCLGHYVTI-EDQKVTRYQAVVPTTWLAGGRDPQGNMGPYE 531
Query: 370 FLCK--GHQLAD------VSAILGSLDIVFGEV 394
GH L D + S D
Sbjct: 532 ESLAGGGHPLLDPKQPLEPLRTIHSFDPCMSCA 564
>gi|2506512|sp|P18191|MBHL_AZOCH RecName: Full=Uptake hydrogenase large subunit; AltName:
Full=Hydrogenlyase; AltName: Full=Membrane-bound
hydrogenase large subunit
Length = 601
Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats.
Identities = 40/400 (10%), Positives = 81/400 (20%), Gaps = 117/400 (29%)
Query: 110 LSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL 169
+ D+ A+ L + ++ ++ + G H Y G ++
Sbjct: 185 WDNPAYQAPARPDLMAVAHYLEALDVQKDIVEIHTIFGGKNPHPNYMVGGVACAINLDDV 244
Query: 170 -----------VEDIGCWCDSFPSALNDIS--DLLTGNRIFKQRNVNIGTVKLEDAWGWG 216
+ + ++ D+L I+K G
Sbjct: 245 GAAGGRSTCTSLNFVLERIHEAREFTRNVYLPDVLAVAGIYKDWLYGGGLPGHNLLSYGT 304
Query: 217 FSGVMIRGS----------GAAWDLR------------KSQPYECYSELDFDIPIGKH-- 252
F+ V S G WD + + Y D +
Sbjct: 305 FTKVPGDKSSDLLPAGAIVGGNWDEVLPVDVRVPEEIQEFVSHSWYRYADETKGLHPWDG 364
Query: 253 --------------------------GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKV 286
+ + E + R + G+ V
Sbjct: 365 VTEPKFELGPNTKGTRTNIKELDEAHKYSWIKARAWRGHAMEVGPLARYIIAYRSGREYV 424
Query: 287 GPVSAS----------------------------DPKIVPPKRADMKRSMESLIHHFK-- 316
M ++L+ + K
Sbjct: 425 KEQVDRSLAAFNQSTGLNLGLKQFLPSTLGRTLARALECELAVDSMLDDWQALVGNIKAG 484
Query: 317 --------LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA----- 363
+ + EAP+G G ++ K + P
Sbjct: 485 DRATANVEKWDPSTWPKEAKGVGINEAPRGALGHWIRLK-DGKIENYQAIVPTTWNGTPR 543
Query: 364 ----HLQAMEFLCKGHQL--AD----VSAILGSLDIVFGE 393
++ A E ++ D + L S D
Sbjct: 544 DHLGNIGAYEAALLNTRMERPDEPVEILRTLHSFDPCLAC 583
Score = 98.5 bits (244), Expect = 2e-18, Method: Composition-based stats.
Identities = 23/100 (23%), Positives = 41/100 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D + G + RG E +++ + A + +R+ V
Sbjct: 25 IEGHMRCEVNVDANNIITNAVSTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGTTRWT 84
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
AVE LGI+IP LIR L + ++ H++
Sbjct: 85 SVRAVEDALGIQIPYNAHLIRNLMDKQLQVQDHIVPFYHL 124
>gi|124268011|ref|YP_001022015.1| nickel-iron hydrogenase, large subunit [Methylibium petroleiphilum
PM1]
gi|124260786|gb|ABM95780.1| nickel-iron hydrogenase, large subunit [Methylibium petroleiphilum
PM1]
Length = 618
Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 41/102 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + LD V R G + RG E +++ + A + +R+ V
Sbjct: 26 IEGHMRCEVNLDSNNVIRNAVSTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGCHALT 85
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI IP LIR + ++ + H ++
Sbjct: 86 SVRAVEDALGIVIPKNAYLIREIMAKTLQEHDHAVHFYHLHA 127
Score = 97.7 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 21/198 (10%), Positives = 51/198 (25%), Gaps = 16/198 (8%)
Query: 211 DAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESV 270
G + R ++ Y + D Y + L +
Sbjct: 404 WRGHAMEVGPLSRYILGYAHAKQGHKYCQRVKEQIDTSAMIINSVYPKALGLPETQYSAK 463
Query: 271 KIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVY 330
+++ + R L + A + ++ ++ + + + +
Sbjct: 464 QLLPTTIGRTLARALEAQYCAEMMLEDFKELVANIKAGDTTTANVEKWDPATWPKEAKGV 523
Query: 331 AAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLAD-- 379
V AP+G G ++ + + P + + A E +A+
Sbjct: 524 GTVAAPRGTLGHWIRIK-DGRIENYQCVVPTTWNGSPRDNKGQIGAFEASLMNTPMANPE 582
Query: 380 ----VSAILGSLDIVFGE 393
+ L S D
Sbjct: 583 QPVEILRTLHSFDPCLAC 600
>gi|294792108|ref|ZP_06757256.1| nickel-iron hydrogenase, large subunit [Veillonella sp. 6_1_27]
gi|294457338|gb|EFG25700.1| nickel-iron hydrogenase, large subunit [Veillonella sp. 6_1_27]
Length = 633
Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 3/104 (2%)
Query: 20 AHGVLRLILELDG--EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQE 77
G LR+ +++D VE G RG E + + + + R+ V
Sbjct: 12 IEGHLRVEIKVDEASGKVEDA-LSSGTAWRGIELVAKDRDPRDLWAFVQRICGVCTTTHA 70
Query: 78 HAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A AVE +GI IP IR + + H+++
Sbjct: 71 LAALRAVEDAIGITIPKNANYIRNIMHSSLDVHDHIVHFYHLHA 114
Score = 86.5 bits (213), Expect = 6e-15, Method: Composition-based stats.
Identities = 12/93 (12%), Positives = 25/93 (26%), Gaps = 16/93 (17%)
Query: 317 LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QA 367
+ + V+AP+G G ++ + + P + A
Sbjct: 521 KFEPNTWDKDAKGVGLVDAPRGGLGHWIHIK-DGRSANYQCIVPSTWNACPKTAANEHGA 579
Query: 368 MEFLCKGH--QLADVSA----ILGSLDIVFGEV 394
E ++AD ++ S D
Sbjct: 580 YEDSMIDTHVKIADKPLEILKVIHSFDPCLACA 612
>gi|1333732|emb|CAA46303.1| HydB [Wolinella succinogenes]
Length = 575
Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 43/101 (42%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D V + L RG E +++ + A + R+ V + A
Sbjct: 12 IEGHLRIEVVVDENNVIQDAFSTATLWRGLETILKGRDPRDAGFFTQRICGVCTYSHYKA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI+ P+ +LIR L S + H ++
Sbjct: 72 GISAVENALGIKPPLNAELIRSLMSISLILHDHTVHFYHLH 112
Score = 90.0 bits (222), Expect = 6e-16, Method: Composition-based stats.
Identities = 43/391 (10%), Positives = 91/391 (23%), Gaps = 99/391 (25%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H + ++ L+ L E + + H G
Sbjct: 163 GNLGPFANAYWGHKTYRFSPEQNLIVLSHYLKALEVQRVAAQMMAIWGAKQPHPQSLTVG 222
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALN-----DISDLLTGNRIFKQRNVNIGTVKLEDAW- 213
GV + +G W + + +D++ +FK +G +++ +
Sbjct: 223 GVTSVMDALDPSRLGDWLTKYKYVADFVNRAYYADVVMAAEVFKSEPSVLGGCNVKNFYS 282
Query: 214 ----------GWGFSGVMIRGSG----------------AAWDLRKS--QPYECYSELDF 245
+G+++ G AW PY+ + ++
Sbjct: 283 YQEIPLNKTEWMYSTGIVMDGDITKVHEINEDLITEEATHAWYKENKALHPYDGQQDPNY 342
Query: 246 ------------------DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVG 287
+ K + + + E + V ++
Sbjct: 343 TGFKDMETVGPDGTMVKTKVIDEKGKYTWIKAPRYGGKPLEVGPLATIVVGLAAKNPRIE 402
Query: 288 PVSASDPKIVPPKRADMK---------------------RSMESLIHHFKLYTEGY---- 322
V+ K A + + SLI + K+ Y
Sbjct: 403 KVATQFLKDTGLPLAALFTTLGRTAARMLECKLSADYGFEAFNSLIANLKVDQSTYTTYK 462
Query: 323 ----HVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA---------ME 369
G V P+G ++ + P + E
Sbjct: 463 IDKNKEYKGRYMGTV--PRGVLSHWVRIK-NGVIQNYQAVVPSTWNAGPRDANGTKGPYE 519
Query: 370 FLCKGHQLAD------VSAILGSLDIVFGEV 394
G +L D + ++ S D
Sbjct: 520 ASLVGMKLQDLSQPLEIIRVIHSFDPCIACA 550
>gi|242310367|ref|ZP_04809522.1| ni/fe hydrogenase [Helicobacter pullorum MIT 98-5489]
gi|239522765|gb|EEQ62631.1| ni/fe hydrogenase [Helicobacter pullorum MIT 98-5489]
Length = 578
Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 41/101 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D V L RG E +++ + R+ V + A
Sbjct: 13 IEGHLRIEVIVDENNVITDAYSSSTLWRGIEVIVKNRDPRDVGFMVQRICGVCTYSHYKA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI++P Q++R L + + HL++
Sbjct: 73 GITAVEDALGIKVPFNAQMVRSLMNVSLVLHDHLVHFYHLH 113
Score = 90.0 bits (222), Expect = 6e-16, Method: Composition-based stats.
Identities = 38/401 (9%), Positives = 83/401 (20%), Gaps = 100/401 (24%)
Query: 91 EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSR 150
++ + L H + ++ L+ L E + +
Sbjct: 156 KVAKFASSKQGLGPFANAYWGHKTYRFSPEQNLIVLSHYLKALEVQRVAAEMMAIFGAKQ 215
Query: 151 MHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN-----DISDLLTGNRIFKQR---NV 202
H GGV +G W + + +D++ ++K
Sbjct: 216 PHPQSLTVGGVTCVADILDPSRLGDWLTKYKEVSDFINRAYYADVVMAAEVYKNEPSVLK 275
Query: 203 NIGTVKLEDA-WGWGFSGVMIRGSG-----------------------AAWDLRKS--QP 236
G + SG +W P
Sbjct: 276 GCGVKNFMSYAEIPVNHNETLYSSGIVRNGDISKLFEINEDLITEEATHSWYQNDKALHP 335
Query: 237 YECYSELDFDIPIGKH------------------GDCYDRYLVRMMEMRESVKIIRQCVN 278
YE + ++ + + + E E + V
Sbjct: 336 YEGDTTPNYTGFVDADTIGPDGTPIKTKALNLEGKYSWIKSPRYNGEPMEVGPLAAIVVG 395
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADM---------------------KRSMESLIHHFKL 317
++ ++ K + + SL+ + K
Sbjct: 396 LAAKNPRITKIATQFLKDTGLPIEALFTTLGRTAARLLECKLSADYGIEAFNSLVENLKT 455
Query: 318 YTEGYHVP---------VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---- 364
+ P G V P+G ++ + P +
Sbjct: 456 GDQTTCAPYKIDSNKEYKGRYIGNV--PRGMLSHWVRIK-DGVVSNYQAVVPSTWNAGPK 512
Query: 365 -----LQAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
+ E G ++ D + + S D
Sbjct: 513 DSKNQMGPYEASLVGTKIQDLTQPLEIIRTIHSFDPCIACA 553
>gi|34557998|ref|NP_907813.1| Ni/Fe hydrogenase [Wolinella succinogenes DSM 1740]
gi|1346496|sp|P31883|MBHL_WOLSU RecName: Full=Quinone-reactive Ni/Fe-hydrogenase large chain;
AltName: Full=Hydrogen:quinone oxidoreductase; AltName:
Full=Membrane-bound hydrogenase large subunit
gi|34483716|emb|CAE10713.1| NI/FE HYDROGENASE [Wolinella succinogenes]
Length = 576
Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 43/101 (42%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D V + L RG E +++ + A + R+ V + A
Sbjct: 13 IEGHLRIEVVVDENNVIQDAFSTATLWRGLETILKGRDPRDAGFFTQRICGVCTYSHYKA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI+ P+ +LIR L S + H ++
Sbjct: 73 GISAVENALGIKPPLNAELIRSLMSISLILHDHTVHFYHLH 113
Score = 89.6 bits (221), Expect = 7e-16, Method: Composition-based stats.
Identities = 43/391 (10%), Positives = 91/391 (23%), Gaps = 99/391 (25%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H + ++ L+ L E + + H G
Sbjct: 164 GNLGPFANAYWGHKTYRFSPEQNLIVLSHYLKALEVQRVAAQMMAIWGAKQPHPQSLTVG 223
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALN-----DISDLLTGNRIFKQRNVNIGTVKLEDAW- 213
GV + +G W + + +D++ +FK +G +++ +
Sbjct: 224 GVTSVMDALDPSRLGDWLTKYKYVADFVNRAYYADVVMAAEVFKSEPSVLGGCNVKNFYS 283
Query: 214 ----------GWGFSGVMIRGSG----------------AAWDLRKS--QPYECYSELDF 245
+G+++ G AW PY+ + ++
Sbjct: 284 YQEIPLNKTEWMYSTGIVMDGDITKVHEINEDLITEEATHAWYKENKALHPYDGQQDPNY 343
Query: 246 ------------------DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVG 287
+ K + + + E + V ++
Sbjct: 344 TGFKDMETVGPDGTMVKTKVIDEKGKYTWIKAPRYGGKPLEVGPLATIVVGLAAKNPRIE 403
Query: 288 PVSASDPKIVPPKRADMK---------------------RSMESLIHHFKLYTEGY---- 322
V+ K A + + SLI + K+ Y
Sbjct: 404 KVATQFLKDTGLPLAALFTTLGRTAARMLECKLSADYGFEAFNSLIANLKVDQSTYTTYK 463
Query: 323 ----HVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA---------ME 369
G V P+G ++ + P + E
Sbjct: 464 IDKNKEYKGRYMGTV--PRGVLSHWVRIK-NGVIQNYQAVVPSTWNAGPRDANGTKGPYE 520
Query: 370 FLCKGHQLAD------VSAILGSLDIVFGEV 394
G +L D + ++ S D
Sbjct: 521 ASLVGMKLQDLSQPLEIIRVIHSFDPCIACA 551
>gi|219564336|dbj|BAH03738.1| [NiFe] hydrogenase large subunit [uncultured bacterium]
Length = 415
Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats.
Identities = 39/351 (11%), Positives = 76/351 (21%), Gaps = 76/351 (21%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDI--PPEL 169
H +++ A L + + H + GGV
Sbjct: 65 HPAYQLDPEVNLIATADYLKALHVQVEAARGMAVFGAKNPHTQFTVGGGVTCYEALTLAR 124
Query: 170 VEDIGCWCDSFPSALNDIS--DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG-------- 219
+ + + DLL +K GT + +G
Sbjct: 125 INEFREIYKKTKDFIEQYYIPDLLAVAEGYKNWASFGGTQHFMAFGEFPAAGGERDLNSR 184
Query: 220 -------------------VMIRGSGAAWDLRK----SQPYECYSELDFDIPIGKHGDCY 256
K PY+ + F K +
Sbjct: 185 WLKPGVIYNRMITDAQKFDPTKIAEHVRHSWYKGDKAMSPYQDETRPAFTQLGDKDRYSW 244
Query: 257 DRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPK--------------------- 295
+ E+ + + V V P+ K
Sbjct: 245 LKAPRYDNRAVETGPLAQMLVAYAQNHKTVKPLVDHVLKSLSVGHGALFSTLGRTVARGI 304
Query: 296 IVPPKRADMKRSMESLIHHF-----KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGN 350
++ + + K+ + + + AP+G +L +D
Sbjct: 305 ETLAIAQRVETWLNEYEANIGKGDKKIAADYETPKNAKGVGFLNAPRGGLSHWLRTDENG 364
Query: 351 KPYRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VSAILGS 386
K ++ P +L A E G +AD + + S
Sbjct: 365 KIANFQLVVPTTWNLGPRDGKNVPGAAEEALVGTPVADPKRPVEILRTIHS 415
>gi|322418755|ref|YP_004197978.1| nickel-dependent hydrogenase large subunit [Geobacter sp. M18]
gi|320125142|gb|ADW12702.1| nickel-dependent hydrogenase large subunit [Geobacter sp. M18]
Length = 571
Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ LE DG + RG E++++ + A + R+ V A
Sbjct: 14 IEGHLRIELEADGGKISNA-WACATQFRGIERVLQGRDPRDAWAFAQRICGVCTGVHAIA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE + IP +LIR L S + + H+++
Sbjct: 73 SIRAVEDAIKCRIPPCAELIRNLVSGMATLQDHVMHFYHLHA 114
Score = 97.7 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 43/383 (11%), Positives = 76/383 (19%), Gaps = 101/383 (26%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H ++ AL L + +++ + +G H Y G +
Sbjct: 174 HPAYRLPPEANLMALAHYLEALSWQREIIRLHTIFAGKNPHPNYLVGGMACSINLDNQIA 233
Query: 172 DIGCWCDSFPSALND--------ISDLLTGNRIFKQRNVNIGT----------------- 206
D + + F IGT
Sbjct: 234 INQVRLDEIAGMIAQAKRFVLEVYYPDVLAIASFYPEYAAIGTSSSTLLATGESAFSCSG 293
Query: 207 --------------------------VKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
E +S G ++P
Sbjct: 294 TPAGGAVPAALLMDGNYTTPHSFDPGKVAEFVSSAWYSYPEGDRQGLHPWQGHTEPKYTG 353
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIR-------------QCVNRLLGKNKVG 287
+ F + + + + R Q L K G
Sbjct: 354 PKPPFKQLSDREKYTWCKAPRYDGRAVQVGPNARILVACAQGHAETVQLAREGLAKLGAG 413
Query: 288 PVSASDPKIVPPKRA--------DMKRSMESLIHHFK----------LYTEGYHVPVGEV 329
+ + RA M + L K L+ +
Sbjct: 414 VEALNSTLGRTYCRALESVILARRMDQWFAQLNERIKAGDVATFNRELWEPASWPRQAQG 473
Query: 330 YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKG---HQL 377
+EA +G ++ + R + P + + E G H L
Sbjct: 474 IGFMEAARGTLSHWVEI-EDGRVSRYQAVVPSTWNSSGRDPGGQMGPFEQALAGDGKHPL 532
Query: 378 AD------VSAILGSLDIVFGEV 394
AD V + S D
Sbjct: 533 ADPKRPIEVLRTIHSFDPCESCA 555
>gi|15606276|ref|NP_213655.1| hydrogenase large subunit [Aquifex aeolicus VF5]
gi|2983466|gb|AAC07046.1| hydrogenase large subunit [Aquifex aeolicus VF5]
Length = 564
Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E+ + + G + RG E +++ + +A + R+ V A
Sbjct: 12 IEGHLRIEAEVKDGKITKA-YSSGTMVRGIEIILKGRDPREAWAFAQRICGVCTTVHAIA 70
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE L I +P+ L+R L + H+++ +
Sbjct: 71 SVRAVEDALSINVPVNASLLRKLIIGTIFVHDHVVHFYHLHL 112
Score = 98.5 bits (244), Expect = 2e-18, Method: Composition-based stats.
Identities = 29/238 (12%), Positives = 62/238 (26%), Gaps = 28/238 (11%)
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+N++ + +T + + E ++G K +
Sbjct: 315 NINEVKEYVTHSWYKYSVGDDKPLHPWEGETNLNYTGPKPPYEYLN-VEGKYSWLKAPRY 373
Query: 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
D+ + +G Y M +RE V+ + ++ + +
Sbjct: 374 KDYSVEVGPLSRILALYARDMYGIREEVEKHLKEMDVPFEGMFSTMGRTFARALETKLYS 433
Query: 303 -DMKRSMESLIHHFKL----------YTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNK 351
MK L+ + K + + +EAP+G ++ K
Sbjct: 434 FSMKNWFSELMENVKKGNYDVFNPEKWEPSTWPKETKGVGFMEAPRGSLSHWVHIK-DGK 492
Query: 352 PYRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
+ P + A E GH L + + + S D
Sbjct: 493 LENYQAVVPTTWNASPRDAKGNPSAYEASLVGHSLHNPKEPVEILRTIHSFDPCLACA 550
>gi|308751921|gb|ADO45404.1| nickel-dependent hydrogenase large subunit [Hydrogenobacter
thermophilus TK-6]
Length = 633
Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 3/104 (2%)
Query: 20 AHGVLRLILELDG--EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQE 77
G LR+ L +D V+ G + RG E ++ + A + R+ V
Sbjct: 12 IEGHLRIELIVDEKTGKVQDA-VSSGTMWRGIELILRGRDPRDAWAFAQRICGVCTSIHA 70
Query: 78 HAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
HA +E L I+IP IR + + HL++
Sbjct: 71 HASVRCIEDALEIQIPKNANYIRNIMYGSLQTHDHLVHFYHLHA 114
Score = 93.9 bits (232), Expect = 4e-17, Method: Composition-based stats.
Identities = 32/287 (11%), Positives = 70/287 (24%), Gaps = 41/287 (14%)
Query: 147 SGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGT 206
+G + GV +D + + A ++ + ++ + + G
Sbjct: 324 TGDYHSKILYHCNGVVEDFAEGIDKAKYYPMVGKDFADPNVIQEYVAHSWYRYPDESKGL 383
Query: 207 VKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMM-- 264
E ++G L + Y + + +V
Sbjct: 384 HPWEGITEPNYTGPKEGTKTQWKYLDEKGKYSWIKSPRWRGKPCEVEPLARYIVVYTAVK 443
Query: 265 -------EMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKL 317
M E V ++++L + + + + +L KL
Sbjct: 444 QGHIKPSWMDEMVVRQIDLISKVLDLPPHVWLPTTVGRTAARGLEAQLGASANLYFLKKL 503
Query: 318 YT----------------EGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
Y + +AP+G G ++I K + + P
Sbjct: 504 YDNIKAGDTAVANMEKWDPSTWPKEAKGVGITDAPRGALGHWVIIK-DGKIHNYQCVVPT 562
Query: 362 YAH---------LQAMEFLCKGHQLA------DVSAILGSLDIVFGE 393
+ A E K + +V + S D
Sbjct: 563 TWNGGARDPMGGQGAFEECMKDTPVKVVDKPLEVLRGVHSFDPCLAC 609
>gi|288818324|ref|YP_003432672.1| Ni,Fe-hydrogenase large subunit [Hydrogenobacter thermophilus TK-6]
gi|152061256|dbj|BAF73675.1| Ni,Fe-hydrogenase large subunit [Hydrogenobacter thermophilus]
gi|288787724|dbj|BAI69471.1| Ni,Fe-hydrogenase large subunit [Hydrogenobacter thermophilus TK-6]
Length = 633
Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 3/104 (2%)
Query: 20 AHGVLRLILELDG--EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQE 77
G LR+ L +D V+ G + RG E ++ + A + R+ V
Sbjct: 12 IEGHLRIELIVDEKTGKVQDA-VSSGTMWRGIELILRGRDPRDAWAFAQRICGVCTSIHA 70
Query: 78 HAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
HA +E L I+IP IR + + HL++
Sbjct: 71 HASVRCIEDALEIQIPKNANYIRNIMYGSLQTHDHLVHFYHLHA 114
Score = 95.4 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 33/287 (11%), Positives = 71/287 (24%), Gaps = 41/287 (14%)
Query: 147 SGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGT 206
+G + GV +D + + A ++ + ++ + + G
Sbjct: 324 TGDYHSKILYHCNGVVEDFAEGIDKAKYYPMVGKDFADPNVIQEYVAHSWYRYPDESKGL 383
Query: 207 VKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMM-- 264
E ++G L + Y + + G +V
Sbjct: 384 HPWEGITEPNYTGPKEGTKTQWKYLDEKGKYSWIKSPRWRGKPCEVGPLARYIVVYTAVK 443
Query: 265 -------EMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKL 317
M E V ++++L + + + + +L KL
Sbjct: 444 QGHIKPSWMDEMVVRQIDLISKVLDLPPHVWLPTTVGRTAARGLEAQLGASANLYFLKKL 503
Query: 318 YT----------------EGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
Y + +AP+G G ++I K + + P
Sbjct: 504 YDNIKAGDTAVANMEKWDPSTWPKEAKGVGITDAPRGALGHWVIIK-DGKIHNYQCVVPT 562
Query: 362 YAH---------LQAMEFLCKGHQLA------DVSAILGSLDIVFGE 393
+ A E K + +V + S D
Sbjct: 563 TWNGGARDPMGGQGAFEECMKDTPVKVVDKPLEVLRGVHSFDPCLAC 609
>gi|303229333|ref|ZP_07316123.1| putative Uptake hydrogenase large subunit [Veillonella atypica
ACS-134-V-Col7a]
gi|303230775|ref|ZP_07317522.1| putative Uptake hydrogenase large subunit [Veillonella atypica
ACS-049-V-Sch6]
gi|302514535|gb|EFL56530.1| putative Uptake hydrogenase large subunit [Veillonella atypica
ACS-049-V-Sch6]
gi|302515869|gb|EFL57821.1| putative Uptake hydrogenase large subunit [Veillonella atypica
ACS-134-V-Col7a]
Length = 633
Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 3/104 (2%)
Query: 20 AHGVLRLILELDG--EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQE 77
G LR+ +++D VE G RG E + + + + R+ V
Sbjct: 12 IEGHLRVEIKVDEASGKVEDA-LSSGTAWRGIELVAKDRDPRDLWAFVQRICGVCTTTHA 70
Query: 78 HAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A AVE LGI IP IR + + HL++
Sbjct: 71 LAALRAVEDALGISIPKNANYIRNIMHSSLDVHDHLVHFYHLHA 114
Score = 89.6 bits (221), Expect = 7e-16, Method: Composition-based stats.
Identities = 12/93 (12%), Positives = 25/93 (26%), Gaps = 16/93 (17%)
Query: 317 LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QA 367
+ + V+AP+G G ++ + + P + A
Sbjct: 521 KFEPNKWPKDAKGVGLVDAPRGGLGHWIHIK-DGRSANYQCIVPSTWNACPKTAANEHGA 579
Query: 368 MEFLCKGH--QLADVSA----ILGSLDIVFGEV 394
E ++AD ++ S D
Sbjct: 580 YEDSMIDTHVKIADKPLEILKVIHSFDPCLACA 612
>gi|62180125|ref|YP_216542.1| putative hydrogenase-1 large subunit [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|62127758|gb|AAX65461.1| putative hydrogenase-1 large subunit [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|322714596|gb|EFZ06167.1| putative hydrogenase-1 large subunit [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
Length = 267
Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats.
Identities = 16/92 (17%), Positives = 27/92 (29%), Gaps = 16/92 (17%)
Query: 317 LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQA 367
L+ + EAP+G G ++ K + P + + A
Sbjct: 159 LWEPDTWPTSAKGVGFSEAPRGALGHWIKI-ENQKIDSYQCVVPTTWNAGPRDDKGQIGA 217
Query: 368 MEFLCKGHQLA------DVSAILGSLDIVFGE 393
E G +LA ++ L S D
Sbjct: 218 YEAALMGTKLAVPDQPLEILRTLHSFDPCLAC 249
Score = 88.5 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 32/81 (39%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D V G + RG E +++ + A + +R+ V
Sbjct: 27 IEGHMRCEVNIDSNNVITNAVSTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGTHALT 86
Query: 80 YALAVEKLLGIEIPIRGQLIR 100
AVE LGI IP IR
Sbjct: 87 SIRAVENALGIAIPDNANCIR 107
>gi|238018979|ref|ZP_04599405.1| hypothetical protein VEIDISOL_00841 [Veillonella dispar ATCC 17748]
gi|237864463|gb|EEP65753.1| hypothetical protein VEIDISOL_00841 [Veillonella dispar ATCC 17748]
Length = 633
Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 3/104 (2%)
Query: 20 AHGVLRLILELDG--EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQE 77
G LR+ +++D VE G RG E + + + + R+ V
Sbjct: 12 IEGHLRVEIKVDEASGKVEDA-LSSGTAWRGIELVAKDRDPRDLWAFVQRICGVCTTTHA 70
Query: 78 HAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A AVE LGI IP IR + + H+++
Sbjct: 71 LAALRAVEDALGITIPKNANYIRNIMHSSLDVHDHIVHFYHLHA 114
Score = 86.5 bits (213), Expect = 7e-15, Method: Composition-based stats.
Identities = 12/93 (12%), Positives = 25/93 (26%), Gaps = 16/93 (17%)
Query: 317 LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QA 367
+ + V+AP+G G ++ + + P + A
Sbjct: 521 KFEPNTWDKDAKGVGLVDAPRGGLGHWIHIK-DGRSANYQCIVPSTWNACPKTAANEHGA 579
Query: 368 MEFLCKGH--QLADVSA----ILGSLDIVFGEV 394
E ++AD ++ S D
Sbjct: 580 YEDSMIDTHVKIADKPLEILKVIHSFDPCLACA 612
>gi|296272895|ref|YP_003655526.1| nickel-dependent hydrogenase large subunit [Arcobacter nitrofigilis
DSM 7299]
gi|296097069|gb|ADG93019.1| nickel-dependent hydrogenase large subunit [Arcobacter nitrofigilis
DSM 7299]
Length = 578
Score = 99.6 bits (247), Expect = 7e-19, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 50/160 (31%), Gaps = 5/160 (3%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +D V + RG E++++ + R+ V
Sbjct: 13 IEGHLRIEAVIDDNNVVTDAYSSSTMFRGIEEILKGRDPRDCGLLAMRICGVCTGTHYQR 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKL 139
AVE + IP +L+R + + H+++ AL
Sbjct: 73 SIEAVEHAFKVTIPKNARLVRNMMQGSLYVHDHIVHFYHLH----ALDWVDITKALEADP 128
Query: 140 MVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
E A + RP +D+ E+ E + +
Sbjct: 129 KKAVEEAQ-KWAKLSGQRPWNASEDVYAEVQERVTKYVKQ 167
Score = 97.3 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 37/362 (10%), Positives = 80/362 (22%), Gaps = 94/362 (25%)
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
L+ L E + ++ G H GGV + I + A
Sbjct: 194 LSHYLDALELQREIAKAQAIFGGKNPHPQSIVVGGVTCVQDIKNPARIAEFKTIMQKAQK 253
Query: 186 -----DISDLLTGNRIFKQRNVNI------------------------------GTVKLE 210
+ D+ ++ ++ G V +
Sbjct: 254 FAKQAYLPDVYMAGTMYADEALDGTGGGLGNYMSYGDFNLDDTSFYEAKKLFPSGIVMNK 313
Query: 211 DAWGWGFSGVMIRGSGAAWDLRKS----QPYECYSELDFD----------IPIGKHGDCY 256
D + PY ++ ++ K+ +
Sbjct: 314 DLSKVYDLDQTKISEDVTHSWYEGKTNLHPYVGETKPNYTGFKDKKDGIAYLDIKNKYSW 373
Query: 257 DRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPK--------------------- 295
+ + E + R V G ++ + K
Sbjct: 374 IKSPLYNDNRMEVGPLARMIVGVARGDERISKYVTTFLKNGNLPTKVLFSTVGRTAARAI 433
Query: 296 --------IVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISD 347
I+ K + + + + + + EAP+G G ++
Sbjct: 434 ETEMMSDVILDWADELAKNAASGDLSTWTDFDFDKVSKDAQGFGMAEAPRGALGHWIKIK 493
Query: 348 GGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLAD------VSAILGSLDIVFG 392
K + P + + A E G ++ D + + S D
Sbjct: 494 -DGKVLNYQAVVPSTWNAAPKDYKNRMGAYESSLVGTKVVDPDMPLEILRTIHSFDPCIA 552
Query: 393 EV 394
Sbjct: 553 CA 554
>gi|315453686|ref|YP_004073956.1| Ni/Fe-hydrogenase large subunit [Helicobacter felis ATCC 49179]
gi|315132738|emb|CBY83366.1| Ni/Fe-hydrogenase large subunit [Helicobacter felis ATCC 49179]
Length = 590
Score = 99.6 bits (247), Expect = 7e-19, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 42/101 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D V L RG E +I+ + A R+ V + A
Sbjct: 13 IEGHLRIEVVVDDNNVITDAHSCSTLFRGLETIIKNRDPRDAGFIAQRICGVCTYSHYKA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI P+ QL+R L + + H+++ T
Sbjct: 73 GISAVEDALGIVPPLNAQLVRSLMNIALLLHDHVVHFYTLH 113
Score = 88.5 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 18/83 (21%)
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA---------MEFLCKGHQ 376
G V P+G ++ + P + A E G +
Sbjct: 474 KGRYIGQV--PRGMLSHWVRIK-NGVVENYQAVVPSTWNAGARDAKGQSGPYEMSLIGTK 530
Query: 377 LAD------VSAILGSLDIVFGE 393
+AD + + S D
Sbjct: 531 IADLTQPLEIIRTIHSFDPCIAC 553
>gi|260881352|ref|ZP_05893406.1| hydrogenase large subunit [Mitsuokella multacida DSM 20544]
gi|260849168|gb|EEX69175.1| hydrogenase large subunit [Mitsuokella multacida DSM 20544]
Length = 637
Score = 99.6 bits (247), Expect = 7e-19, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 3/104 (2%)
Query: 20 AHGVLRLILELDGE--IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQE 77
G LR+ +++D V G RG E +++ + A Y R+ V
Sbjct: 12 IEGHLRVEVQVDEGSGKVTDA-ISSGTAWRGLELVMKDRDPRDAWAYIQRICGVCTSAHA 70
Query: 78 HAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI+IP IR + + + H+++
Sbjct: 71 LGSLRAVEDALGIKIPKNANYIRNIMAATLTVQDHIVHFYHLHA 114
Score = 92.7 bits (229), Expect = 9e-17, Method: Composition-based stats.
Identities = 19/133 (14%), Positives = 39/133 (29%), Gaps = 16/133 (12%)
Query: 277 VNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAP 336
V R + ++A K K +S ++ + + + + EAP
Sbjct: 480 VGRTAARGLDCQLNAEINKFFFDKLIANIKSGDTKTANMEKWDPSTWPKTAKGVGLYEAP 539
Query: 337 KGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGH--QLAD----VS 381
+G Y++ K + P + A E ++AD +
Sbjct: 540 RGALSHYIVIK-DGKTDNYQAVVPTTWNACPRDDEAGHGAYEKAMMDTQVKIADKPLEIV 598
Query: 382 AILGSLDIVFGEV 394
++ S D
Sbjct: 599 KVVRSFDPCMACA 611
>gi|213621525|ref|ZP_03374308.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 138
Score = 99.6 bits (247), Expect = 8e-19, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 37/102 (36%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
+R + +D V G + RG E +++ + A + +R+ V
Sbjct: 27 IEEHMRCEVNIDSNNVITNAVSTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGTHALT 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI IP IR + + HL++
Sbjct: 87 SIRAVENALGIAIPDNANCIRNMMQATLHVHDHLVHFYHLHA 128
>gi|284928662|ref|YP_003421184.1| Ni,Fe-hydrogenase I large subunit [cyanobacterium UCYN-A]
gi|284809121|gb|ADB94826.1| Ni,Fe-hydrogenase I large subunit [cyanobacterium UCYN-A]
Length = 531
Score = 99.6 bits (247), Expect = 8e-19, Method: Composition-based stats.
Identities = 46/329 (13%), Positives = 89/329 (27%), Gaps = 29/329 (8%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + ++++ V L RG E +++ K + R+ + +
Sbjct: 14 VEGDLDIRVDIEDGYVVNA-WTKAELFRGFEVILKGKDPQAGLIVTPRICGICGASHLTC 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV---------------- 123
+ A++ + E+P L R L + I SH +
Sbjct: 73 ASWALDTIWETEVPRNAILARNLGQIVETIQSHPRHFYALYATDLTNKKYKNSPFYEEAC 132
Query: 124 -----GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
T K + Y G H++Y PGGV V +
Sbjct: 133 KRFTPFTGTSYEIAIITSAKPVELYALFGGQWPHSSYMVPGGVMCAPTLTDVTRGWGILE 192
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
F + + + G +R I T + W G W + +
Sbjct: 193 YFRTNW--LEPVWLG--CSLERYEKIQTYEDFLEWLEESPKHFNSDLGFYWRMGLDIGLD 248
Query: 239 CYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
Y + + D+Y ++ R S I++ + +
Sbjct: 249 KYGQGPGRYLTWGYLPHEDKYQKPTIKDRNSAVIMK---GGVYDSFTDMHHMVDHSFAIE 305
Query: 299 PKRADMKRSMESLIHHFKLYTEGYHVPVG 327
+ +H F T ++
Sbjct: 306 NTSHSWYEEGTTDVHPFDRVTNPQNMNKA 334
Score = 94.2 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 26/177 (14%), Positives = 46/177 (25%), Gaps = 22/177 (12%)
Query: 237 YECYSELDFDIPIGKHGDCYDRYLVRMMEMRESV-KIIRQCVNRLLGKNKVGPVSASDPK 295
Y + + R LV + ES ++ +
Sbjct: 340 YSWSTAVSHKDLGRMEVGSLARQLVAGGKHGESWQHYDGLILDMFKKIGGPSVHLREFAR 399
Query: 296 IVPPKRADMKRSMESLIHHFKLYTEGYHVPV---GEVYAAVEAPKGEFGVYLISDGGNKP 352
+ + + R E + FKL Y P G + EA +G ++
Sbjct: 400 MHESVK--LYREAERCLREFKLNDPWYIKPKEKDGRGWGGTEASRGALCHWVEV-EKGVI 456
Query: 353 YRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
+I AP ++ +E G + D V + S D
Sbjct: 457 KNYQIIAPSTWNIGPRDGKDVRGPIEEALIGIPIEDMSNPVEVGHVARSFDSCLVCT 513
>gi|195952433|ref|YP_002120723.1| nickel-dependent hydrogenase large subunit [Hydrogenobaculum sp.
Y04AAS1]
gi|195932045|gb|ACG56745.1| nickel-dependent hydrogenase large subunit [Hydrogenobaculum sp.
Y04AAS1]
Length = 633
Score = 99.6 bits (247), Expect = 8e-19, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 39/105 (37%), Gaps = 5/105 (4%)
Query: 20 AHGVLRLILELDGE---IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQ 76
G LRL +E+D E V G + RG E +++ + + + R+ V
Sbjct: 13 IEGHLRLEIEVD-EPSHKVTNA-VSAGTMWRGIELIVKNRDPREVWAFTQRICGVCTTIH 70
Query: 77 EHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A +E L IEIP IR + HL++
Sbjct: 71 ALASVRNIEDALDIEIPKNANYIRNIMLGTLYAHDHLVHFYHLHA 115
Score = 95.4 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 30/248 (12%), Positives = 63/248 (25%), Gaps = 41/248 (16%)
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
DI + ++ N N G ++G L ++ Y E +
Sbjct: 364 DIIQEWVTHSWYQYPNNNEGLHPWNGITDPYYTGPKEGTKTHWKYLDENGKYSWIKEPRW 423
Query: 246 DIPIGKHGDCYDRYLVRMM---------EMRESVKIIRQCVNRLLGKNKVGPVSASDPKI 296
+ G +V M E V V++LL + + +
Sbjct: 424 KNLPAEVGPLARYMIVYTAVKQGHIKPSWMDEMVVNQIDLVSKLLNLPPHVWMPTTVGRT 483
Query: 297 VPPKRA----------------DMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEF 340
D ++ ++ + + + + + EAP+G
Sbjct: 484 AARALECQLGANASNYFLKKLYDNIKAGDTSVANMEKWEPSTWPSQAKGVGITEAPRGAL 543
Query: 341 GVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQL------ADVSAILG 385
G + I K + P + A E + + ++ +
Sbjct: 544 GHWCIIK-DGKIENYQAVVPTTWNGSPRDEKGQQGAFERSMQDTIVLIAKEPLEILRSIH 602
Query: 386 SLDIVFGE 393
S D
Sbjct: 603 SFDPCLAC 610
>gi|207110159|ref|ZP_03244321.1| quinone-reactive Ni/Fe hydrogenase, large subunit (hydB)
[Helicobacter pylori HPKX_438_CA4C1]
Length = 127
Score = 99.2 bits (246), Expect = 9e-19, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 42/101 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D + V L RG E +I+ + A R+ V + A
Sbjct: 12 IEGHLRIEVIVDDDNVITDAFSSSTLFRGLETIIKGRDPRDAGFIAQRICGVCTYSHYKA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI P+ QL+R L + H+++ T
Sbjct: 72 GITAVENALGITPPLNAQLVRSLMNMALLFHDHVVHFYTLH 112
>gi|121535774|ref|ZP_01667576.1| nickel-dependent hydrogenase, large subunit [Thermosinus
carboxydivorans Nor1]
gi|121305673|gb|EAX46613.1| nickel-dependent hydrogenase, large subunit [Thermosinus
carboxydivorans Nor1]
Length = 631
Score = 99.2 bits (246), Expect = 9e-19, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 39/104 (37%), Gaps = 3/104 (2%)
Query: 20 AHGVLRLILELDG--EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQE 77
G LR+ L++D VE G RG E ++ + A + R+ V
Sbjct: 12 IEGHLRVELKIDETSGKVEDA-LSSGTAWRGIELIVRDRDPRDAWAFVQRICGVCTTVHA 70
Query: 78 HAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGIEIP IR + + HL++
Sbjct: 71 LTSLRAVEDALGIEIPKNANYIRNIMAATQTTQDHLIHFYHLHA 114
Score = 96.9 bits (240), Expect = 4e-18, Method: Composition-based stats.
Identities = 27/218 (12%), Positives = 54/218 (24%), Gaps = 25/218 (11%)
Query: 192 TGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGK 251
T + + + G + R + K + F +
Sbjct: 402 TNWKYLDEAGKYSWLKTPKWRGKTAEVGPLARY-IIIYTKVKQGIIKPTWAEQFVV---D 457
Query: 252 HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESL 311
D + L E + R V L + K++ RA ++
Sbjct: 458 QIDTVSKVLNLPPEKWMPSTLGRTAVRGLEAQLYAYINKYYFDKLIRNIRA-----GDTT 512
Query: 312 IHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH------- 364
+ + + + EAP+G G ++I K + P +
Sbjct: 513 VANMAKWEPSSWPKESKGVGLHEAPRGALGHWVIIK-DGKIANYQAIVPTTWNACPRDSK 571
Query: 365 --LQAMEFLCKGH--QLADVSA----ILGSLDIVFGEV 394
A E ++ D ++ S D
Sbjct: 572 AGYGAYEASMIDTKVKVTDKPLEILKVIHSFDPCIACA 609
>gi|220934440|ref|YP_002513339.1| Ni-Fe hydrogenase large chain [Thioalkalivibrio sp. HL-EbGR7]
gi|219995750|gb|ACL72352.1| Ni-Fe hydrogenase large chain [Thioalkalivibrio sp. HL-EbGR7]
Length = 583
Score = 99.2 bits (246), Expect = 1e-18, Method: Composition-based stats.
Identities = 33/196 (16%), Positives = 54/196 (27%), Gaps = 32/196 (16%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G LR+ E D + G + RG E ++ + A + R+ V +
Sbjct: 14 IEGHLRIEAEADEHGNITHAS-SSGTMVRGIETILTGRDPRDAWAFAQRICGVCTLVHGI 72
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV--------------- 123
A +VE L IP QLIR L + H+++
Sbjct: 73 ASVRSVEDALDYPIPPNAQLIRNLMIGAQYVHDHVMHFYHLHALDWVDVVSALKADPRAT 132
Query: 124 ---------------GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE 168
G +E + A+G H AY P +
Sbjct: 133 SELAQSLSSYPRSSPGHFADVQKRVKEFVESGQLGIFANGYWGHPAYKLPPEANLMALAH 192
Query: 169 LVEDIGCWCDSFPSAL 184
++ + D
Sbjct: 193 YLDALAWQRDVAKLHA 208
Score = 86.9 bits (214), Expect = 5e-15, Method: Composition-based stats.
Identities = 37/404 (9%), Positives = 81/404 (20%), Gaps = 110/404 (27%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H ++ AL L + + + G H + G
Sbjct: 164 GQLGIFANGYWGHPAYKLPPEANLMALAHYLDALAWQRDVAKLHAIFGGKNPHPNFLVGG 223
Query: 160 GVHQDIPPEL------------VEDIGCWCDSFPSALN-----DISDLLTGNRIFKQRNV 202
+ + S ++ D + + + +R
Sbjct: 224 APSAISTGGDGSRGGTAINDVGLAQVRDIIGQMRSFVDQVYLPDTLAIAGFYKDWFRRGE 283
Query: 203 NIGTVKLEDA---------------------------WGWGFSGVMIRGSGAAWDLRKS- 234
G + +
Sbjct: 284 GTGNFLTYGDFPEQGLDDPATYLVPAGVILDRDLSRIHPMDLNDPEQIQEFVSHSWYDYS 343
Query: 235 -------QPYECYSELDFDIPIGKH-------GDCYDRYLVRMMEMRESVKIIRQCVNRL 280
PY+ ++L++ P + + + + E + R +
Sbjct: 344 TGKDSGLHPYQGETKLNYTGPKPPYQHLDVEASYSWLKSPRWRGKPMEVGPLARVLMMYA 403
Query: 281 LGKNKVGPVSASDPKIVPPKRAD---------------------MKRSMESLI------- 312
G ++ K + M ++L+
Sbjct: 404 NGHEPTRELAGYALKTLDLPLEALFSTMGRTAARTLESKIVADQMMTWYDNLMANIRAGD 463
Query: 313 ---HHFKLYTEGYHVPV---GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH-- 364
H+ L+ + +EAP+G + + K + P +
Sbjct: 464 LRTHNHDLWDPSTWHREHKVRKGVGYMEAPRGALAHWSVI-ENGKLSNYQAVVPSTWNAG 522
Query: 365 -------LQAMEFLCK-GHQLAD------VSAILGSLDIVFGEV 394
E HQL D + + S D
Sbjct: 523 PRDAQGQFGPYEAALMDNHQLHDTHQPLEILRTIHSFDPCLACA 566
>gi|323477030|gb|ADX82268.1| coenzyme F420-reducing hydrogenase alpha subunit-like protein
[Sulfolobus islandicus HVE10/4]
Length = 388
Score = 99.2 bits (246), Expect = 1e-18, Method: Composition-based stats.
Identities = 57/385 (14%), Positives = 102/385 (26%), Gaps = 46/385 (11%)
Query: 26 LILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVE 85
L + + + V G RG EK K R+ + + Y
Sbjct: 11 LDVNIRDKKVVSAKCS-GNKVRGFEKAFTGKDAKTLYEVLPRVLATCSQSHLYVYIK--- 66
Query: 86 KLLGIEIPIRGQLIRVLYSEIGRILSHL-----LNVTTQAMDVGALTPPLWGFE----ER 136
P I L + I SH+ D P F
Sbjct: 67 -------PHTQTSITELLMFLEIIDSHMKHPYAYWFPHIIKDEKYSFPSGEKFRKVNLVS 119
Query: 137 EKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRI 196
K+ E+ G H Y R + + EL + I + I D L R+
Sbjct: 120 RKIKEIMEKIGGKWPHVDYLRGKKIVKITKEELRDIISFMENELLGMS--IEDFLNIKRL 177
Query: 197 FKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCY 256
+ V+ G L P++ I Y
Sbjct: 178 EELSADLKLLVEKSIESLNWNFG-------LRDYLVVGFPFKNTDLDYNYIKDEGLEVSY 230
Query: 257 DRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFK 316
V + + +++ + + P + R + + S I+ +
Sbjct: 231 KGKKVEVGPLAQALTFDELVKSYFIKYGPS-------PLLREISRIKVAAKLISEINDLE 283
Query: 317 LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---AMEFLCK 373
+ +E + + G + E+ +G K +I P A+E
Sbjct: 284 ISSERFSISDGNYVSFAESIRGSLIHQYEI-SNGKISNYRIIQPTTFIASPSGALESAVI 342
Query: 374 GHQLA------DVSAILGSLDIVFG 392
G + +++ + SLD F
Sbjct: 343 GLPIKSAKDPVELALTVSSLDTCFV 367
>gi|325294653|ref|YP_004281167.1| Cytochrome-c3 hydrogenase [Desulfurobacterium thermolithotrophum
DSM 11699]
gi|325065101|gb|ADY73108.1| Cytochrome-c3 hydrogenase [Desulfurobacterium thermolithotrophum
DSM 11699]
Length = 575
Score = 98.9 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + + V+ + RG E +++ + A + R+ V A
Sbjct: 13 IEGHLRIEVVPENGYVKNA-YSSAQMWRGLEVILQGRNPDDAWMFVQRICGVCTTVHALA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+VE L +EIP Q+IR + + H+++ +
Sbjct: 72 SVRSVENALQLEIPYNAQMIRNIIIAAHALHDHIVHFYHLSA 113
Score = 92.7 bits (229), Expect = 1e-16, Method: Composition-based stats.
Identities = 15/87 (17%), Positives = 25/87 (28%), Gaps = 18/87 (20%)
Query: 325 PVGE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCK 373
P GE EAP+G + + K + P + + E
Sbjct: 473 PAGEIKGCGFHEAPRGTLSHWCVI-ENGKLKNYQAVVPSTWNASPRDGKGQMGPYEASLI 531
Query: 374 GHQLA------DVSAILGSLDIVFGEV 394
G+ +A +V + S D
Sbjct: 532 GNPIAEPEKPLEVLRTVHSFDPCIACA 558
>gi|327399253|ref|YP_004340122.1| Cytochrome-c3 hydrogenase [Hippea maritima DSM 10411]
gi|327181882|gb|AEA34063.1| Cytochrome-c3 hydrogenase [Hippea maritima DSM 10411]
Length = 564
Score = 98.9 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 1/101 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +++ +E G L RG E +++ + A R+ V A
Sbjct: 15 IEGHLRIEIDVKDGKIENS-WSSGTLWRGIEPILQGRDIRDAGLLVQRICGVCTWAHYEA 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
++ E LGI P +L+R + + + H+++
Sbjct: 74 NTMSAEVALGIRPPTNARLVRNMINASQFMHDHIVHFYALH 114
Score = 88.5 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 47/328 (14%), Positives = 77/328 (23%), Gaps = 60/328 (18%)
Query: 123 VGALTPPLWGFEEREKLMV--FYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
VG +T + + R HA + E E GC +F
Sbjct: 223 VGGITSVMDMLDARRLGQYTSKLAEVGNFIQHAYLPDIDLITHFYKDEFSEGWGCGSYNF 282
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
S T + + R + G + D K Y
Sbjct: 283 LSYGGFPE---TNDWKAEYRYLPQGVIYDRDLSRVEKVDERHITESVVHSWYKGPNKGVY 339
Query: 241 SELDFDIPIG-----------KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPV 289
+ IP + + +M E + R V L N + +
Sbjct: 340 PGEEDTIPEYTGLNDDGTLKKDGKYSWIKAPRYKGKMMEVGPLSRMLVGYALNHNNIREL 399
Query: 290 SASDPKIVPPKRADM---------------------KRSMESLIHHFKLYTEGYHV---- 324
+ + M + + L+ + K E
Sbjct: 400 VDAYLSKHNAEPRQMFSTVGRTAARAIETFYIWYGAHKWADDLVANLKQGDERTWTRFEY 459
Query: 325 PVGEV---YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLC 372
P E A EAP+G ++ G K ++ P + A E
Sbjct: 460 PEEETNTSVALYEAPRGSLAHFVRIKGK-KVTHYQVVVPSTWNASPRDEKGQRGAYEESL 518
Query: 373 KGHQLAD------VSAILGSLDIVFGEV 394
G + D V + S D
Sbjct: 519 IGLPVPDTEEPLEVLRTIHSFDPCLACA 546
>gi|224418555|ref|ZP_03656561.1| Ni/Fe hydrogenase [Helicobacter canadensis MIT 98-5491]
gi|253826893|ref|ZP_04869778.1| quinone-reactive Ni/Fe hydrogenase HydB [Helicobacter canadensis
MIT 98-5491]
gi|313142083|ref|ZP_07804276.1| ni/fe hydrogenase [Helicobacter canadensis MIT 98-5491]
gi|253510299|gb|EES88958.1| quinone-reactive Ni/Fe hydrogenase HydB [Helicobacter canadensis
MIT 98-5491]
gi|313131114|gb|EFR48731.1| ni/fe hydrogenase [Helicobacter canadensis MIT 98-5491]
Length = 578
Score = 98.9 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 41/101 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D V L RG E +++ + R+ V + A
Sbjct: 13 IEGHLRIEVIVDENNVITDAYSSSTLWRGIEVIVKNRDPRDVGFMVQRICGVCTYSHYKA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI+IP Q++R L + + HL++
Sbjct: 73 GITAVEDALGIQIPFNAQMVRSLMNVSLVLHDHLVHFYHLH 113
Score = 86.9 bits (214), Expect = 5e-15, Method: Composition-based stats.
Identities = 43/401 (10%), Positives = 90/401 (22%), Gaps = 100/401 (24%)
Query: 91 EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSR 150
+ + L H + ++ L+ L E + +
Sbjct: 156 RVAKFASAKQGLGPFANAYWGHKTYRFSPEQNLIVLSHYLKALEVQRVAAQIMAIFGAKQ 215
Query: 151 MHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN-----DISDLLTGNRIFKQR---NV 202
H GGV +G W + + +D++ +++
Sbjct: 216 PHPQSLTVGGVTCVADILDPSRLGDWLTKYKEVADFVNRAYYADVVMAAEVYRNEPSVLK 275
Query: 203 NIGT--------VKLEDAWGWGFSGVMIRGSG--------------------------AA 228
G + + SG++ G
Sbjct: 276 GCGVRNFLSHAEIPVNRNETLYSSGIVRNGDISKLIEINEELITEEATHSWYKNDKALHP 335
Query: 229 WDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGP 288
+D + Y + + D P G L +S + + + V
Sbjct: 336 YDGDTTPNYTGFVDADTIGPDGTPIKTKALNLDGKYSWIKSPRYNGEPMEVGPLAAIVVG 395
Query: 289 VSASDPKIVPPKRADMK-------------------------------RSMESLIHHFKL 317
++A +P+I +K + SLI + K
Sbjct: 396 LAAKNPRITKIATQFLKDTGLPVEALFTTLGRTAARVLECKLSADYGIEAFNSLIENLKT 455
Query: 318 YTEGYHVP---------VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---- 364
+ P G V P+G ++ + P +
Sbjct: 456 GDQSTCAPYKIDNTKEYKGRYIGNV--PRGMLSHWVRIK-DGVVSNYQAVVPSTWNAGPK 512
Query: 365 -----LQAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
+ E G ++ D + + S D
Sbjct: 513 DSKNQMGPYEASLVGIKIQDTTQPLEIIRTIHSFDPCIACA 553
>gi|127681408|gb|ABO28730.1| NiFeSe hydrogenase [Magnetospirillum gryphiswaldense MSR-1]
Length = 453
Score = 98.9 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 25/228 (10%), Positives = 50/228 (21%), Gaps = 52/228 (22%)
Query: 218 SGVMIRGSGAAWDLRKS---QPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIR 274
GV A + K PY+ + + + + + + +
Sbjct: 210 DGVEESVKHAWYTYSKPGALHPYKGETTPHYTDFQDDGKYSWLKAPTFYGKRAQVGPLAN 269
Query: 275 QCVNRLLGKNKVGPV--------------------------SASDPKIVPPKRADMKRS- 307
G + I A++
Sbjct: 270 VLCGLAAGHQPTATYATQMLNTVSTLLGSKVGPEILHSTIGRHAARAIRSGVMAEVLAQN 329
Query: 308 ----MESLIHHFKLYTEGYHVPVGE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
+E++ P GE + EAP+G + + K + P
Sbjct: 330 WSMLIENIGKGDHTTFNKPVFPKGEVMGFGMHEAPRGLLSHWTVIK-DGKIANYQCVVPS 388
Query: 362 YAH---------LQAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
+ + E + +AD V + S D
Sbjct: 389 TWNAGPRDENDAIGPYEASLMDNPIADPEQPLEVLRTVHSFDPCLACA 436
>gi|149194377|ref|ZP_01871474.1| Ni/Fe-hydrogenase large subunit [Caminibacter mediatlanticus TB-2]
gi|149135552|gb|EDM24031.1| Ni/Fe-hydrogenase large subunit [Caminibacter mediatlanticus TB-2]
Length = 578
Score = 98.9 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 2/103 (1%)
Query: 20 AHGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G LR+ + LD + L RG E +++ + A R+ V +
Sbjct: 13 IEGHLRVEVVLDDNNKIVDA-YSSSTLWRGIEVIVKGRDPRDAGFMTGRICGVCTYSHYK 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A +AVE LGIE P+ +L+R L H+++
Sbjct: 72 AGIVAVEDALGIEPPLNAKLVRTLLDYSLFYHDHIVHFYQLHA 114
Score = 90.0 bits (222), Expect = 5e-16, Method: Composition-based stats.
Identities = 42/380 (11%), Positives = 77/380 (20%), Gaps = 100/380 (26%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H T ++ AL+ L E + G H GGV + +
Sbjct: 179 HKTMRFTPEQNLIALSHYLKNLEIQRIAAQAMAVFGGKNPHPQSLTVGGVTCIMDLQDPS 238
Query: 172 DIGCWCDSFPSALN-----DISDLLTGNRIFKQR-------------------------- 200
+G + F +D++ ++
Sbjct: 239 RLGEYLTKFKQLAEWTNRAYYADIVMAAEAYRNEPSVTQKNNLGNYITYKTMQTGKNSFL 298
Query: 201 NVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRK----SQPYECYSELDFDIPIG------ 250
G +K D + K PY + ++ +
Sbjct: 299 FDACGYIKDFDLGKFYEIDESKIEEDVTHSWYKDTGFRHPYNGETIPEYTGYVDGESIDG 358
Query: 251 ------------KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP 298
K + + E E + VN G +V V
Sbjct: 359 KGDVVHTKVVNPKGKYSWIKSPRYNQEPMEVGPLACMVVNYAKGNERVRKVVDEFLAKTN 418
Query: 299 PKRADMKRSM-------------------------ESLIHHFKLYTEGYHVP----VGEV 329
+ ++ E+L + G
Sbjct: 419 LPVEALFTTLGRTAARMLQTKVIADYGIEAFNNLVENLKVDQSTVSPYKIDKNKEYKGRF 478
Query: 330 YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLAD- 379
V P+G + + P + A E G ++ D
Sbjct: 479 IGDV--PRGMLSHWCRIK-NGVIENWQAVVPSTWNAGPVDGNGKKGAYEHNLIGMKIEDP 535
Query: 380 -----VSAILGSLDIVFGEV 394
V + S D
Sbjct: 536 TKPLEVIRNIHSYDPCIACA 555
>gi|154246117|ref|YP_001417075.1| nickel-dependent hydrogenase large subunit [Xanthobacter
autotrophicus Py2]
gi|154160202|gb|ABS67418.1| nickel-dependent hydrogenase large subunit [Xanthobacter
autotrophicus Py2]
Length = 604
Score = 98.9 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 43/102 (42%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D + R G + RG E +++ + A + +R+ V
Sbjct: 26 IEGHMRCEVNVDSNNIIRNAVSTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGCHALT 85
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE L I+IP LIR + +++ + H+++
Sbjct: 86 SVRAVEDALQIKIPNNAFLIREIMAKVLQWHDHVVHFYHLHA 127
Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 21/253 (8%), Positives = 45/253 (17%), Gaps = 54/253 (21%)
Query: 194 NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHG 253
+ + G P + + +
Sbjct: 335 DPRNPDEVQEFVAHSWYTYGDANKDKGLHPWDGITDPQYVLGPNAKGTRTNIEAVDENAK 394
Query: 254 DCYDRYLVRMMEMRESVKIIRQCVNRLLG---------------------------KNKV 286
+ + E + R + G
Sbjct: 395 YSWIKAPRWKGNAVEVGPLARYILAYAQGVDYVKGQVDEALGQFNTLAGTQLTAKQALPS 454
Query: 287 GPVSASDPKIVPPKRADM-KRSMESLIHHFK----------LYTEGYHVPVGEVYAAVEA 335
+ A M + LI + K + + V A
Sbjct: 455 TIGRTLARALEAHYCAKMFLDDFDHLIANIKAGDTSTANMEKWDPSTWPKEAKGVGTVAA 514
Query: 336 PKGEFGVYLISDGGNKPYRCKIRAPGYA---------HLQAMEFLCKGHQLA------DV 380
P+G G ++ + + P ++ A E + ++
Sbjct: 515 PRGGLGHWIKIK-DGRIENYQCVVPTTWNGGPRDPKGNIGAFEASLMNTPMQRPEEPVEI 573
Query: 381 SAILGSLDIVFGE 393
L S D
Sbjct: 574 LRTLHSFDPCLAC 586
>gi|253729600|ref|YP_003029785.1| NdhH [Bambusa oldhamii]
gi|255961427|ref|YP_003097622.1| NADH-plastoquinone oxidoreductase subunit 7 [Dendrocalamus
latiflorus]
gi|246367110|gb|ACS94721.1| NdhH [Bambusa oldhamii]
gi|255040304|gb|ACT99964.1| NADH-plastoquinone oxidoreductase subunit 7 [Dendrocalamus
latiflorus]
Length = 65
Score = 98.5 bits (244), Expect = 2e-18, Method: Composition-based stats.
Identities = 29/60 (48%), Positives = 39/60 (65%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVP 63
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +T +Q +P
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65
>gi|315638882|ref|ZP_07894054.1| quinone-reactive Ni/Fe-hydrogenase [Campylobacter upsaliensis JV21]
gi|315481100|gb|EFU71732.1| quinone-reactive Ni/Fe-hydrogenase [Campylobacter upsaliensis JV21]
Length = 571
Score = 98.5 bits (244), Expect = 2e-18, Method: Composition-based stats.
Identities = 46/392 (11%), Positives = 79/392 (20%), Gaps = 101/392 (25%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H ++ AL+ L + + H G
Sbjct: 164 GNLGPFANAYYGHSTYRFNPEQNLIALSHYLECLRIQRIIAQCMAIFGSKNPHPQSLTVG 223
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALN-----DISDLLTG-----NRIFKQRNVNIGTVKL 209
GV + +G + + F + DL+ N +V + +
Sbjct: 224 GVTCVMDLLSPSRMGEYMEKFKEVADFVNRAYYPDLVMAGKAYANEASVLNDVGVANLYT 283
Query: 210 EDAWGWGFSGVMIRGSGA----------------------AWDLRKSQPYECYSELDFDI 247
+ G + SG ++P Y
Sbjct: 284 FKEFQVGRD-EWLFESGIIKNGDLSKVYEVEEDKITEEATHSWYADNEPLHPYDGKTNPN 342
Query: 248 PIG---------------------KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKV 286
G K + + E + + VN V
Sbjct: 343 YTGLVDGESIDHHGKIAHTKNFDTKGKYSWIKAPRYEGEPMQVGPLANIVVNYAKNNQYV 402
Query: 287 GPVSASDPKIVPPKRADMK--------RSMESLIHHF------------KLYTEGYHVP- 325
PV + K + R +E+ I E P
Sbjct: 403 VPVVDTFLKETNLPLTAVFSTLGRTATRCLEAKIIADNTLKAFDNLVANLKVDESTCSPY 462
Query: 326 --------VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA---------M 368
G V P+G + + P +
Sbjct: 463 VIDKNKEYKGRYMGHV--PRGTLSHWCRIK-NGVIENWQAVVPSTWNASPKDAKGVGGSY 519
Query: 369 EFLCKGHQLADV------SAILGSLDIVFGEV 394
E G ++ADV + S D
Sbjct: 520 EQCLIGLKIADVKQPLEIIRKIHSYDPCIACA 551
Score = 86.5 bits (213), Expect = 7e-15, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 32/78 (41%)
Query: 44 LLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLY 103
L RG E +++ + A R+ V + A +AVE LGI P+ L R L
Sbjct: 37 TLWRGIETIVKGRDPRDAGFMTQRICGVCTFSHYKAGIVAVENALGITPPLNALLTRTLM 96
Query: 104 SEIGRILSHLLNVTTQAM 121
+ + H+++
Sbjct: 97 NAALFLHDHIVHFYQLHA 114
>gi|289806834|ref|ZP_06537463.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Typhi str. AG3]
Length = 229
Score = 98.5 bits (244), Expect = 2e-18, Method: Composition-based stats.
Identities = 12/82 (14%), Positives = 23/82 (28%), Gaps = 16/82 (19%)
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLA 378
+ +EAP+G +++ + P + + E G +A
Sbjct: 132 KGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPIA 190
Query: 379 D------VSAILGSLDIVFGEV 394
D V + S D
Sbjct: 191 DPAKPLEVVRTIHSFDPCMACA 212
>gi|254459099|ref|ZP_05072522.1| quinone-reactive Ni/Fe-hydrogenase large chain [Campylobacterales
bacterium GD 1]
gi|207084370|gb|EDZ61659.1| quinone-reactive Ni/Fe-hydrogenase large chain [Campylobacterales
bacterium GD 1]
Length = 564
Score = 98.1 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 53/160 (33%), Gaps = 9/160 (5%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR + +D + V + G L RG E +++ + A R+ V +
Sbjct: 12 IEGHLRAEVIVDEDGVIQEAYVSGQLFRGIEIILKGRDPRDAGLLAGRICGVCTNSHFRG 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKL 139
AVE + +P ++IR L + I H+++ +
Sbjct: 72 AVSAVEDAYSLVLPKNAEIIRDLMAMALFIQDHVVHFYHLHALDFVDVTSALCAD----- 126
Query: 140 MVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS 179
+ + H +P E ++ + + D+
Sbjct: 127 ----AKLTSKEAHKYSDKPFRNSHSHYEETIKKLQNFVDA 162
Score = 91.9 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 37/372 (9%), Positives = 85/372 (22%), Gaps = 90/372 (24%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H T ++ ++ L + + K+ G H GG+ +
Sbjct: 175 HSDYKLTPEQNLVMISHYLEALKFQTKISKAVAIFGGKTPHPQSIVVGGITSVADMLNPQ 234
Query: 172 DIGCWCDSFPSALNDISDLLTGNRIFKQ----------------RNVNIGTVKLEDAWGW 215
+ + A I + +++G + E
Sbjct: 235 RLNDYLFVMKEAKEFIDRAYLPDAKMLATAYRDEIKAAVGRANGNFMSVGGYEFEGEQRL 294
Query: 216 GFSGVMIRG-----------------------------SGAAWDLRKSQPYECYSELDFD 246
+GV+ G + + + +
Sbjct: 295 FCNGVIYAHNFENIEEFDENKVSEEVDRAWYKVNGKDREGVGYKDNEVFYTDLNEDGSLK 354
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNR-------------------LLGKNKVG 287
+ + ++ E+ + R ++ L +
Sbjct: 355 TAKNDDKYSWIKAPRYDGKVMETGPLARVLISYKKDNKLIKSFVDEFLEATDLELIDLSS 414
Query: 288 PVSASDPKIVP--PKRADMKRSMESLIHHFKLYTEGYHVP--------VGEVYAAVEAPK 337
V + + + + + + LI + K Y + +E P+
Sbjct: 415 TVGRNSARAIETGYICEYIFKLVSRLIQNIKYYDTDTWTKYDFEKLDKDAKGRVFLEVPR 474
Query: 338 GEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VSA 382
G ++ K + AP + A E G ++ D V
Sbjct: 475 GTLSHFVNIK-DQKIDNYSVIAPTTWNATPKNFDGVRGAYEEALIGVKMQDPSKPLEVLR 533
Query: 383 ILGSLDIVFGEV 394
+L S D
Sbjct: 534 VLHSFDPCLACA 545
>gi|158422223|ref|YP_001523515.1| hydrogenase large subunit protein [Azorhizobium caulinodans ORS
571]
gi|46392531|gb|AAS91027.1| HupL [Azorhizobium caulinodans ORS 571]
gi|158329112|dbj|BAF86597.1| hydrogenase large subunit protein [Azorhizobium caulinodans ORS
571]
Length = 604
Score = 98.1 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 43/102 (42%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D V R G + RG E +++ + A + +R+ V
Sbjct: 26 IEGHMRCEVNVDANNVIRNAVSTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGCHALT 85
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE L I+IP LIR + +++ + H+++
Sbjct: 86 SVRAVEDALQIKIPNNAFLIREIMAKVLQWHDHVVHFYHLHA 127
Score = 93.9 bits (232), Expect = 4e-17, Method: Composition-based stats.
Identities = 25/223 (11%), Positives = 49/223 (21%), Gaps = 54/223 (24%)
Query: 224 GSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCV------ 277
G + P ++ + + + + E + R +
Sbjct: 365 WDGVTEPKYELGPAAKGTKTNIEAVDEAAKYSWIKAPRWRGNAVEVGPLARYILAYSKGV 424
Query: 278 -------NRLLGKNKVGPVSASDPKIVPP---------------KRADMKRSMESLIHHF 315
+ LG+ + PK P M LI +
Sbjct: 425 DYVKGQVDEALGRFNTLAGTNFTPKQALPTTIGRTLARALEAHYCAVMMMDDFNHLIANI 484
Query: 316 K----------LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA-- 363
K + + V AP+G G ++ + + P
Sbjct: 485 KAGDTSTANVEKWDPSTWPKEAKGVGTVAAPRGGLGHWIKIK-DGRIENYQCVVPTTWNG 543
Query: 364 -------HLQAMEFLCKGHQL--AD----VSAILGSLDIVFGE 393
++ A E + D + L S D
Sbjct: 544 GPRDPKGNIGAFEASLLNTPMQRPDEPVEILRTLHSFDPCLAC 586
>gi|213964934|ref|ZP_03393133.1| uptake hydrogenase large subunit [Corynebacterium amycolatum SK46]
gi|213952470|gb|EEB63853.1| uptake hydrogenase large subunit [Corynebacterium amycolatum SK46]
Length = 582
Score = 98.1 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 1/101 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ LE +G ++ RG E +++ + + R+ V A
Sbjct: 14 IEGHLRIELEREGNQIKTA-WSETTQFRGIETIVKNRDPRDVWAFVGRICGVCTGTHSVA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE +G P + + IR L I H+++
Sbjct: 73 SIAAVEDAIGSTPPPQARRIRDLVIGSQEIHDHVVHFYHLH 113
Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 45/428 (10%), Positives = 99/428 (23%), Gaps = 115/428 (26%)
Query: 75 NQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFE 134
N E +A E + GI + + Y H ++ A++ L
Sbjct: 145 NNEETFARVKETVKGIVDSGQLSIFTGGYWG------HEDYRLPPEANLMAVSHYLDALA 198
Query: 135 EREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL-------VEDIGCWCDSFPSALND- 186
+ ++ G H + G P ++ I W D +ND
Sbjct: 199 FQRSIIRINTVFGGKNPHPNFLVGGMACSIDPERSETVNQVGIDQIKSWIDEIVEFVNDC 258
Query: 187 -ISDLLTGNRIFKQRNV--------------------NIGTVKLEDAWGWGFSGVMIRGS 225
D + ++K + +++ GV++ G
Sbjct: 259 FYPDAVAIMSVYKDYFDIGRSSDSFLAVGMAGATYSGDPAKSRVQTVHPNIKPGVILDGD 318
Query: 226 G---AAWDLRKSQ-------------------PYECY-------SELDFDIPIGKHGDCY 256
+ K + PY+ + ++ +
Sbjct: 319 YTKLHPFQPEKIEEFINSAWYTQEAGDDVGLKPYDGETTVNYTGPKPPYEWLSDNEKYTW 378
Query: 257 DRYLVRMMEMRESVKIIRQCVNRLLGKNK-----VGPVSASDPKI--------------- 296
+ + + R + L + + G + D +I
Sbjct: 379 SKAPRYDGRAVQVGPVARVLLAYLQKEPETMRLVDGVMDKLDLRIEQMNSTAGRTYARAV 438
Query: 297 ------------VPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
+ P+ + ++ + + + + +E +G ++
Sbjct: 439 ESVTTANYLADHIFPEFVEALKNGDIDVFDNSRWEPTSWPEKCQGVGFLEVARGMLSHWV 498
Query: 345 ISDGGNKPYRCKIRAPGYA---------HLQAMEFLCKG---HQLADVS------AILGS 386
K + P L E G H L D + S
Sbjct: 499 KI-ENGKVTNYQAVVPTTWLAGGRDPKGQLGPYEHALAGDGTHPLVDPEQPLEPLRTIHS 557
Query: 387 LDIVFGEV 394
D
Sbjct: 558 FDPCMACA 565
>gi|237753358|ref|ZP_04583838.1| quinone-reactive Ni/Fe-hydrogenase subunit large [Helicobacter
winghamensis ATCC BAA-430]
gi|229375625|gb|EEO25716.1| quinone-reactive Ni/Fe-hydrogenase subunit large [Helicobacter
winghamensis ATCC BAA-430]
Length = 578
Score = 98.1 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 41/101 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D V L RG E +++ + R+ V + A
Sbjct: 13 IEGHLRIEVIVDENNVITDAYSSSTLWRGLEVIVKNRDPRDVGFMVQRICGVCTYSHYKA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI+IP +++R L + + HL++
Sbjct: 73 GITAVEDALGIKIPFNAEMVRSLMNISLVLHDHLVHFYHLH 113
Score = 92.7 bits (229), Expect = 9e-17, Method: Composition-based stats.
Identities = 40/401 (9%), Positives = 87/401 (21%), Gaps = 100/401 (24%)
Query: 91 EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSR 150
+ + L H + ++ L+ L E + +
Sbjct: 156 RVKKFASAKQGLGPFANAYWGHKTYRFSPEQNLIVLSHYLKALEVQRVAAKMMAIFGAKQ 215
Query: 151 MHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN-----DISDLLTGNRIFKQR---NV 202
H GGV +G W + + +D++ ++K
Sbjct: 216 PHPQSLTVGGVTCVADILDPSRLGDWLTKYKEVADFVNRAYYADVVMAAEVYKNEPSVLK 275
Query: 203 NIGT--------VKLEDAWGWGFSGVMIRGSG--------------------------AA 228
G + + + +G++ G
Sbjct: 276 GCGVRNFLCHAEIPVNHSETLYSTGIVRNGDISKLLDLDENLITEEATHSWYANSKPLHP 335
Query: 229 WDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGP 288
+D Y + + D P G +S + + + V
Sbjct: 336 YDGETEPNYTGFVDKDTIGPDGNPIRTKALDTDGKYSWIKSPRYNGEAMEVGPLAAIVVG 395
Query: 289 VSASDPKIVPPK-------------------------------RADMKRSMESLIHHFKL 317
++A +P+I + SL+ + K
Sbjct: 396 LAAKNPRITKIATQFLEDTGLPLEALFSTLGRTAARVLECKLSADYGIEAFNSLVENLKT 455
Query: 318 YTEGYHVP---------VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---- 364
+ P G V P+G ++ + P +
Sbjct: 456 GDQTTCAPYSIDNNKEYKGRYIGNV--PRGTLSHWVRIK-DGVVSNYQAVVPSTWNAGPK 512
Query: 365 -----LQAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
+ E G ++ D + + S D
Sbjct: 513 DAKNQMGPYEASLVGTKIQDLTQPLEIIRTIHSFDPCIACA 553
>gi|38717|emb|CAA37134.1| unnamed protein product [Azotobacter chroococcum]
Length = 601
Score = 97.7 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 23/100 (23%), Positives = 41/100 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D + G + RG E +++ + A + +R+ V
Sbjct: 25 IEGHMRCEVNVDANNIITNAVSTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGTTRWT 84
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
AVE LGI+IP LIR L + ++ H++
Sbjct: 85 SVRAVEDALGIQIPYNAHLIRNLMDKQLQVQDHIVPFYHL 124
Score = 88.5 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 39/400 (9%), Positives = 84/400 (21%), Gaps = 117/400 (29%)
Query: 110 LSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL 169
+ D+ A+ L + ++ ++ + G H Y G ++
Sbjct: 185 WDNPAYQAPARPDLMAVAHYLEALDVQKDIVEIHTIFGGKNPHPNYMVGGVACAINLDDV 244
Query: 170 -----------VEDIGCWCDSFPSALNDIS--DLLTGNRIFKQRNVNIGTVKLEDAWGWG 216
+ + ++ D+L I+K G
Sbjct: 245 GAAGGRSTCTSLNFVLERIHEAREFTRNVYLPDVLAVAGIYKDWLYGGGLPGHNLLSYGT 304
Query: 217 FSGVMIRGS----------GAAWDLR------------KSQPYECYSELDFDIPIGKH-- 252
F+ V S G WD + + Y D +
Sbjct: 305 FTKVPGDKSSDLLPAGAIVGGNWDEVLPVDVRVPEEIQEFVSHSWYRYADETKGLHPWDG 364
Query: 253 --------------------------GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKV 286
+ + E + R + G+ V
Sbjct: 365 VTEPKFELGPNTKGTRTNIKELDEAHKYSWIKARAWRGHAMEVGPLARYIIAYRSGREYV 424
Query: 287 GP----------------------------VSASDPKIVPPKRADMKRSMESLIHHFK-- 316
+++ M ++L+ + K
Sbjct: 425 KEQVDRSLAAFNQSTGLNLASSSSALSTLGRTSARALECELAVDSMLDDWQALVGNIKAG 484
Query: 317 --------LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA----- 363
+ + + EAP+G ++ K + P
Sbjct: 485 DRATANVEKWGPEHWPKEAKGVGINEAPRGRSAHWIRLK-DGKIENYQAIVPTTWNGTPR 543
Query: 364 ----HLQAMEFLCKGHQL--AD----VSAILGSLDIVFGE 393
++ A E ++ D + L S D
Sbjct: 544 DHLGNIGAYEAALLNTRMERPDEPVEILRTLHSFDPCLAC 583
>gi|57505453|ref|ZP_00371381.1| hydrogenase (NiFe) large chain Cj1266c [Campylobacter upsaliensis
RM3195]
gi|57016278|gb|EAL53064.1| hydrogenase (NiFe) large chain Cj1266c [Campylobacter upsaliensis
RM3195]
Length = 571
Score = 97.7 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 45/393 (11%), Positives = 83/393 (21%), Gaps = 103/393 (26%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H ++ AL+ L + + H G
Sbjct: 164 GNLGPFANAYYGHSTYRFNPEQNLIALSHYLECLRIQRIIAQCMAIFGSKNPHPQSLTVG 223
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALN-----DISDLLTG-----NRIFKQRNVNIGTVKL 209
GV + +G + + F + DL+ N + +V + +
Sbjct: 224 GVTCVMDLLSPSRMGEYMEKFKEVADFVNRAYYPDLVMAGKAYANEVSVLNDVGVANLYT 283
Query: 210 EDAWGWGFSGVMIRGSGA----------------------AWDLRKSQPYECYSELDFDI 247
+ G + SG ++P Y
Sbjct: 284 FKEFQVGRD-EWLFESGIIKNGDLSKVYEVEEDKITEEATHSWYADNEPLHPYDGKTNPN 342
Query: 248 PIG---------------------KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKV 286
G K + + E + + VN V
Sbjct: 343 YTGLVDGESIDHHGKIAHTKNFDTKGKYSWIKAPRYEGEPMQVGPLANIVVNYAKNNQYV 402
Query: 287 GPVSASDPKIVPPKRADM---------------------KRSMESLIHHFKLYTEGYHVP 325
PV + K + ++ ++L+ + K E P
Sbjct: 403 VPVVDTFLKETNLPLTAVFSTLGRTATRCLEAKIIANNTLKAFDNLVANLK-VDESTCSP 461
Query: 326 ---------VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA--------- 367
G V P+G + + P +
Sbjct: 462 YVIDKNKEYKGRYMGHV--PRGTLSHWCRIK-NGVIENWQAVVPSTWNASPKDAKGVGGS 518
Query: 368 MEFLCKGHQLADV------SAILGSLDIVFGEV 394
E G ++ADV + S D
Sbjct: 519 YEQCLIGLKIADVKQPLEIIRKIHSYDPCIACA 551
Score = 86.5 bits (213), Expect = 7e-15, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 32/78 (41%)
Query: 44 LLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLY 103
L RG E +++ + A R+ V + A +AVE LGI P+ L R L
Sbjct: 37 TLWRGIETIVKGRDPRDAGFMTQRICGVCTFSHYRAGIVAVENALGITPPLNALLTRTLM 96
Query: 104 SEIGRILSHLLNVTTQAM 121
+ + H+++
Sbjct: 97 NAALFLHDHIVHFYQLHA 114
>gi|152993239|ref|YP_001358960.1| Ni-Fe hydrogenase, large subunit [Sulfurovum sp. NBC37-1]
gi|151425100|dbj|BAF72603.1| Ni-Fe hydrogenase, large subunit [Sulfurovum sp. NBC37-1]
Length = 552
Score = 97.7 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 45/372 (12%), Positives = 86/372 (23%), Gaps = 80/372 (21%)
Query: 102 LYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGV 161
L H + ++ L+ L + + + G H GG+
Sbjct: 165 LGPFANASWGHPSYKLSPEENLILLSHYLDALKFQTSISKAVAIFGGKTPHPQSIVVGGI 224
Query: 162 HQDIPPELVEDIGCWCDSFPS--------ALNDISDLLTGNRIFKQRNVNIGTVKLEDAW 213
+ + L D+ L+T R +
Sbjct: 225 TSVKDMLDPARVNDYLFIIKEAKEFIDRAYLPDMKLLVTAYREEIKEGRGRANGNFISVG 284
Query: 214 GWGFSGVMIRGSGA--AWDLRKSQPYEC-----------YSELDFDIPIGKH-------- 252
G+ F+G + SG D K +P++ Y E D P
Sbjct: 285 GYDFNGGTLFESGVIFGHDFDKVKPFDPEKITEHVDRAWYEESDPQTPCYTDLNEDGTLK 344
Query: 253 ------GDCYDRYLVRMMEMRESVKIIRQCVNRLLGK-------------------NKVG 287
+ + + E + R V+ G +
Sbjct: 345 TEQVSDKYSWIKAPRYAEKTMECGPLARLLVSYAKGSQSMKLYVDGFLSETGLELIDLST 404
Query: 288 PVSASDPKIVP--PKRADMKRSMESLIHHFKLYTEGYH--------VPVGEVYAAVEAPK 337
V + + + + R + L+ + Y + VE P+
Sbjct: 405 SVGRNAARAIETQYIAEYLFRFVSDLLQNITYYDTETWGRYDFESLPKTAKGKFFVEVPR 464
Query: 338 GEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VSA 382
G ++ K + AP + E G + D
Sbjct: 465 GLLSHFISIKE-QKIANYSVIAPTTWNATPKNRDGHRGPYEEALIGITIEDTDKPIEALR 523
Query: 383 ILGSLDIVFGEV 394
++ S D
Sbjct: 524 VIRSFDPCLACA 535
Score = 96.2 bits (238), Expect = 8e-18, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 2/101 (1%)
Query: 20 AHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G LR+ + ++ V+ G L RG E +++ + A R+ V +
Sbjct: 12 IEGHLRIEVVVNETNTVQEA-YASGQLFRGIETILKNRDPRDAGLMAGRICGVCTNSHFR 70
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
A VE G+E+P ++I+ L + I H+++
Sbjct: 71 AAVSCVEDAYGLEVPANAKIIKELMALALFIQDHVVHFYHL 111
>gi|408901|gb|AAA64446.1| hydrogenase large subunit [Azotobacter chroococcum]
Length = 174
Score = 97.7 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 13/93 (13%), Positives = 25/93 (26%), Gaps = 16/93 (17%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA---------HLQ 366
+ + + EAP+G G ++ K + P ++
Sbjct: 65 EKWDPSTWPKEAKGVGINEAPRGALGHWIRLK-DGKIENYQAIVPTTWNGTPRDHLGNIG 123
Query: 367 AMEFLCKGHQL--AD----VSAILGSLDIVFGE 393
A E ++ D + L S D
Sbjct: 124 AYEAALLNTRMERPDEPVEILRTLHSFDPCLAC 156
>gi|154174578|ref|YP_001408295.1| quinone-reactive Ni/Fe-hydrogenase large chain [Campylobacter
curvus 525.92]
gi|112802767|gb|EAU00111.1| quinone-reactive Ni/Fe-hydrogenase large chain [Campylobacter
curvus 525.92]
Length = 572
Score = 97.7 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 50/413 (12%), Positives = 87/413 (21%), Gaps = 96/413 (23%)
Query: 77 EHAYALAVEKLLGI-EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEE 135
+ YA ++L + E L H T ++ AL+ L
Sbjct: 141 QIPYATGADRLKEVKERVGAFVKKGNLGPFANAYWGHSTYKFTPEQNLIALSHYLECLSV 200
Query: 136 REKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN-----DISDL 190
+ + H GGV + +G + F +D+
Sbjct: 201 QRTIAQMMAIFGAKNPHPQSLTVGGVTCIMDLLDPARLGEYLSKFKEIEQFVSRAYHADI 260
Query: 191 LTGNRIFK-------------------------QRNVNIGTVKLEDAWGWGFSGVMIRGS 225
L + + G + D
Sbjct: 261 LMAAKAYGNEASVLNDVGVSNLLCYDEFLVGKNDHLFKGGIILSGDISKVYDVDDAKITE 320
Query: 226 GAAWDLRKSQ-PYECYSELDFDIPIGKH---------------------GDCYDRYLVRM 263
A K+ P Y G + +
Sbjct: 321 EATRSWYKNDAPLHPYDGQTDANYTGLIDGESVGPDGQITHGKIFDTKGKYSWIKAPRYD 380
Query: 264 MEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM------------------- 304
+ I +N G +V PV K + +
Sbjct: 381 GMPMQVGPIASIVINYARGNERVVPVVDKFLKDSGLPLSAVFSTLGRTATRMLEATVVSQ 440
Query: 305 --KRSMESLIHHFKLYTEG---YHV---PVGEVYAAVEAPKGEFGVYLISDGGNKPYRCK 356
+ SLI + K E Y + + Y A AP+G + +
Sbjct: 441 HTLTAFNSLIENLKTDQETCAKYVIDNNKEYKGYFAGNAPRGALSHWCRIK-NGVIENWQ 499
Query: 357 IRAPGYAHLQA---------MEFLCKGHQLAD------VSAILGSLDIVFGEV 394
P + E G ++AD + + S D
Sbjct: 500 AVVPSTWNASPKDAKNQMGSYEACLIGLKIADLSKPLEIIRKIHSYDPCIACA 552
Score = 86.9 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 45/101 (44%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D V + L RG E++++ + A + R+ V + A
Sbjct: 14 IEGHLRIEVVVDENNVVKEAYSGSTLWRGLEQIVKNRDPRDAGFFMQRICGVCTFSHYRA 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+AVEK LGI P+ +L R L + + H+++
Sbjct: 74 GIVAVEKALGITPPLNAELTRTLMNAALYLHDHIVHFYQLH 114
>gi|254459032|ref|ZP_05072455.1| quinone-reactive Ni/Fe-hydrogenase large chain [Campylobacterales
bacterium GD 1]
gi|207084303|gb|EDZ61592.1| quinone-reactive Ni/Fe-hydrogenase large chain [Campylobacterales
bacterium GD 1]
Length = 577
Score = 97.3 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 2/102 (1%)
Query: 20 AHGVLRLILEL-DGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G LR + + D IV+ L RG E + + + R+ V +
Sbjct: 13 IEGHLRAEVIVGDDGIVQDAFVSS-TLWRGLEVIAKGRDPRNVPLMMQRICGVCTYSHYL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+AVE LGI+IP +L+R L + I H+++
Sbjct: 72 KSTMAVEDALGIKIPYNAELVRSLMNAALFIHDHVVHFYHLH 113
Score = 96.9 bits (240), Expect = 5e-18, Method: Composition-based stats.
Identities = 47/400 (11%), Positives = 91/400 (22%), Gaps = 99/400 (24%)
Query: 91 EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSR 150
+I + + L H T ++ AL+ L E + G
Sbjct: 156 KIGKFAKNPQGLGPFANAYWGHGTYRLTPEQNLIALSHYLKALEVQRTAAQLLAIFGGKN 215
Query: 151 MHAAYFRPGGVHQDIPPELVEDIGCWCDSF-----PSALNDISDLLTGNRIFKQRN---V 202
H GGV + +G + F D++ ++K
Sbjct: 216 PHPQSLAVGGVTCVMDILNPAKMGEYMTKFKVLANFINNAYYPDIVMAAEMYKTEGSVVK 275
Query: 203 NIGTVKLEDAWGWGFS-GVMIRGSGAAWD-------------------------LRKSQP 236
G + G + SG +D + P
Sbjct: 276 PAGVKNFMAHEDFIVGRGDRLFESGIVYDGDLSKVFEIDEDLITEEATHSWYQNDKALHP 335
Query: 237 YECYSELDFDIPI------------------GKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
Y+ ++ + + K + + + E + V+
Sbjct: 336 YDGETDPKYTGFVDGETVGPDGKMIHSKQINEKEKYSWIKSPRYDGKPMEVGPLACMVVS 395
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSM---------------------ESLIHHFKL 317
G KV V K + ++ +LI + K+
Sbjct: 396 YAKGNAKVQKVVNDFLKTTGLPAGALFTTLGRTAARMLQAKLIGDNALIAFNNLIENLKV 455
Query: 318 YTEGY--------HVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM- 368
E G V P+G ++ + P + M
Sbjct: 456 DQETCATYTIDKDKEYKGRGIGDV--PRGMLSHWVRIK-NGVVENYQAVVPSTWNAGPMD 512
Query: 369 --------EFLCKGHQLAD------VSAILGSLDIVFGEV 394
E G ++ + + I+ S D
Sbjct: 513 ANGVKGPYEADLIGLKIENLTQPLEIIRIIHSYDPCIACA 552
>gi|224437477|ref|ZP_03658439.1| Ni/Fe hydrogenase alpha subunit [Helicobacter cinaedi CCUG 18818]
gi|313143933|ref|ZP_07806126.1| ni/Fe hydrogenase alpha subunit [Helicobacter cinaedi CCUG 18818]
gi|313128964|gb|EFR46581.1| ni/Fe hydrogenase alpha subunit [Helicobacter cinaedi CCUG 18818]
Length = 576
Score = 97.3 bits (241), Expect = 4e-18, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 42/101 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D V + L RG E +++ + A R+ V + A
Sbjct: 13 IEGHLRIEVIVDENNVIQDAFSSSTLWRGLETIVKNRDPRDAGFLVQRICGVCTYSHYKA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+AVE LGI+ P+ L R L + + H ++ T
Sbjct: 73 GIVAVEDALGIKPPLNAILTRTLMNISLFLHDHAVHFYTLH 113
Score = 86.9 bits (214), Expect = 5e-15, Method: Composition-based stats.
Identities = 36/395 (9%), Positives = 73/395 (18%), Gaps = 102/395 (25%)
Query: 98 LIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFR 157
L H + ++ L+ L E + + H
Sbjct: 162 KQGALGPFANAYWGHKTYRFSPEQNLIVLSHYLKLLEVQRVIAQMMAIFGAKNPHPQSLT 221
Query: 158 PGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLT----------GNRIFKQRNVNIGTV 207
GGV + +G W ++ ++ N + +
Sbjct: 222 VGGVTSVMDILDPSRLGEWLTKHLEVVDFVNRAYWADIIMAAEAYKNEDSVLKGCGVKNF 281
Query: 208 KLEDAWGWGFSGVMIRGSGA----------------------AWDLRKSQPYECYSELDF 245
G + SG ++P Y
Sbjct: 282 ISFQEMQVGAE-EWLFSSGIVKNGDLSKVYPIDESKITEEATHSWYEDNEPLHPYDGKTN 340
Query: 246 DIPIGKH---------------------GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKN 284
G + + E E + V G
Sbjct: 341 PHYTGFRDAQTIGADGKLVDSKILDESGKYSWIKSPRYDGEPMEVGPLASVVVGYASGNK 400
Query: 285 KVGPVSASDPKIVPPKRADM---------------------KRSMESLIHHFKLYTEGYH 323
+ V + + + ++ +L + +
Sbjct: 401 AIVDVVNEFLQATGLPKEALFSTLGRTAARAIECKVVADHGIKAFNALKDNIAKGDKSTC 460
Query: 324 VP---------VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL--------- 365
P G V P+G ++ + P +
Sbjct: 461 APYSIDKNKEYKGRFIGNV--PRGMLSHWVRIK-NGVIENYQAVVPSTWNAGPRDAKGQK 517
Query: 366 QAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
E G Q+ D + + S D
Sbjct: 518 GPYEMSLIGTQVKDITQPLEIIRHIHSFDPCIACA 552
>gi|74317393|ref|YP_315133.1| Ni-Fe hydrogenase large chain [Thiobacillus denitrificans ATCC
25259]
gi|74056888|gb|AAZ97328.1| Ni-Fe hydrogenase large chain [Thiobacillus denitrificans ATCC
25259]
Length = 596
Score = 97.3 bits (241), Expect = 4e-18, Method: Composition-based stats.
Identities = 33/201 (16%), Positives = 62/201 (30%), Gaps = 37/201 (18%)
Query: 20 AHGVLRLILELD-GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G LR+ E D + + G + RG E ++ + A + R+ V +
Sbjct: 15 IEGHLRIEAETDVDGRILKA-YSAGTMVRGIEIILRGRDPRDAWAFAQRICGVCTLVHGV 73
Query: 79 AYALAVEKLL-----GIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM------------ 121
A +VE L G +P +LIR L + H+++
Sbjct: 74 ASVRSVEDALHRAIPGYALPPNAELIRNLMIAAQHVHDHVMHFYHLHALDWVDVVSALKA 133
Query: 122 ------------DVGALTPPLWGFEEREKLMVFYE------RASGSRMHAAYFRPGGVHQ 163
+ + P + + + K+ F E A+G H AY P +
Sbjct: 134 DPRAASTLAQSISDYSRSSPGYFADVQRKVKTFVEQGQLGIFANGYWGHPAYKLPPEANL 193
Query: 164 DIPPELVEDIGCWCDSFPSAL 184
++ + +
Sbjct: 194 MALAHYLDALAWQREVVKLHA 214
Score = 88.1 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/277 (10%), Positives = 76/277 (27%), Gaps = 41/277 (14%)
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTV 207
G +YF P GV D D+ +I + ++ + + G
Sbjct: 314 GFWDTDSYFIPRGVILD------RDLTRVHPIDLDDDKEIQEFVSHSWYRYEGGDAQGLH 367
Query: 208 KLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMR 267
+ ++G +Q Y + + G ++ +
Sbjct: 368 PFKGETALNYTGPKPPYEQLD----VAQKYSWMKSPRWKGKSMEVGPLARVLVMVAKGDK 423
Query: 268 ESVKIIRQCVN--RLLGKNKVGPVSASDPKIVP--PKRADMKRSMESLI----------H 313
++ +++ + + L + + + + M+ + L+
Sbjct: 424 QAKELVDRALKTLDLPVTALYSTLGRTAARTLESKILADAMQGWFDQLMANIKAGDLRTF 483
Query: 314 HFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL-------- 365
+ K + + +EAP+G +++ D + + P +
Sbjct: 484 NEKYWDPSTWPAHMQGVGLMEAPRGGLAHWIVVD-DGRISNYQAVVPSTWNAGPRDAAGQ 542
Query: 366 -QAMEFLCK-GHQLAD------VSAILGSLDIVFGEV 394
A E + H + D + + S D
Sbjct: 543 PGAYEAALQHNHTMLDPKQPIEILRTIHSFDPCIACA 579
>gi|222823719|ref|YP_002575293.1| Ni/Fe-hydrogenase, large subunit [Campylobacter lari RM2100]
gi|222538941|gb|ACM64042.1| Ni/Fe-hydrogenase, large subunit [Campylobacter lari RM2100]
Length = 571
Score = 97.3 bits (241), Expect = 4e-18, Method: Composition-based stats.
Identities = 47/391 (12%), Positives = 84/391 (21%), Gaps = 99/391 (25%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H T ++ AL+ L + + H G
Sbjct: 164 GNLGPFANAYYGHATYRFTPEQNLIALSHYLECLRIQRVIAQAMAIFGAKNPHPQSLTVG 223
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALN-----DISDLLTGNRIFKQR---NVNIGTVKLED 211
GV + + + F + DL+ + + + ++G
Sbjct: 224 GVTCVMDLLNPSRMAEYMTKFQEVADFINRAYYPDLIMAAKAYSKEASVLNDVGVNNFYT 283
Query: 212 AWG-------WGFSGVMIRGSG-------------------AAWDLRKSQPYECYSELDF 245
W F G +IR D PY+ + ++
Sbjct: 284 EREFQVSSDEWLFEGGIIRNGDLSKVEEVDEAKITEEATRSWYADNEALHPYDGKTNPNY 343
Query: 246 ------------------DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVG 287
+ K + + + + VN G V
Sbjct: 344 TGLIDGESIDDKGNMVHSKVFDTKGKYSWIKAPRYENLPMQVGPLANILVNYAKGNKIVV 403
Query: 288 PVSASDPKIVPPKRADMK--------RSMESLI---HHFK------------------LY 318
S K + R++E+ I H K
Sbjct: 404 EAVDSFLKATNLPVKALMSTLGRTGARAIEAKIIADHGLKAFNSLVENLKTDESTCATYV 463
Query: 319 TEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA---------ME 369
+ G + AP+G + + P + E
Sbjct: 464 IDKNKEYKGRFMGS--APRGALSHWCRIK-NGVIENWQAVVPSTWNASPKDANGVGGSYE 520
Query: 370 FLCKGHQLAD------VSAILGSLDIVFGEV 394
G +LAD V + S D
Sbjct: 521 QCLIGTKLADVKQPLEVIRAIHSYDPCIACA 551
Score = 85.8 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 1/90 (1%)
Query: 35 VERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPI 94
++ L RG E +++ + A R+ V + A +AVE LGI P+
Sbjct: 29 IKEA-YSGSTLWRGLETIVKGRDPRDAGFLTQRICGVCTFSHYRAGIIAVENALGITPPL 87
Query: 95 RGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
L R L + + H ++
Sbjct: 88 NAVLTRTLMNAALYMHDHPVHFYQLHGLDF 117
>gi|78777632|ref|YP_393947.1| nickel-dependent hydrogenase, large subunit [Sulfurimonas
denitrificans DSM 1251]
gi|78498172|gb|ABB44712.1| Nickel-dependent hydrogenase, large subunit [Sulfurimonas
denitrificans DSM 1251]
Length = 577
Score = 97.3 bits (241), Expect = 4e-18, Method: Composition-based stats.
Identities = 44/395 (11%), Positives = 83/395 (21%), Gaps = 99/395 (25%)
Query: 96 GQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAY 155
+ + L H T ++ AL+ L E + + G H
Sbjct: 161 AKNPQGLGPFANAYWGHKTFRFTPEQNLIALSHYLKALEIQRIIAQMMAIFGGKNPHPQS 220
Query: 156 FRPGGVHQDIPPELVEDIGCWCDSFPSALN-----DISDLLTGNRIFKQR---NVNIGTV 207
GGV + +G + + + + +D++ ++K +G
Sbjct: 221 LAVGGVTCVMDILNPARMGEYLVKYQTIADFVNNAYYADIVMAAEMYKTEPSVMKPMGVK 280
Query: 208 KLEDAWGWGFS-GVMIRGSGA----------------------AWDLRKSQPYECYSELD 244
+ SG + P Y
Sbjct: 281 NFMAHQDMMVGRNDYLFESGVIMNGDLSKVFEIDEDMITEEATHSWYKDDAPQHPYDGTT 340
Query: 245 FDIPIGK---------------------HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGK 283
G + + E E + V G
Sbjct: 341 NPNYTGFVDGDTVGPDGKMISSKMINEKEKYSWIKSPRYKGEPMEVGPLACMLVGYAKGN 400
Query: 284 NKVGPVSASDPKIVPPKRADMKRSM---------------------ESLIHHFKLYTEGY 322
K V A + ++ +LI + K+ E
Sbjct: 401 KKTVKVVNDFLAKTGVPAAALFSTLGRTAGRMLQAKLIADNALVAFNNLIENLKVDQETC 460
Query: 323 --------HVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAM------ 368
G V P+G ++ + P + M
Sbjct: 461 ATYTIDKNREYKGRGMGDV--PRGMLSHWIRIK-NGVVENYQAVVPSTWNAGPMDSKGAK 517
Query: 369 ---EFLCKGHQLAD------VSAILGSLDIVFGEV 394
E G ++ D + I+ S D
Sbjct: 518 GPYEADLIGLKIEDLTQPIEIIRIIHSYDPCIACA 552
Score = 95.8 bits (237), Expect = 1e-17, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 2/102 (1%)
Query: 20 AHGVLRLILEL-DGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G LR + + D +V+ L RG E + + + R+ V +
Sbjct: 13 IEGHLRAEVIVGDDGVVQDAFVSS-TLWRGLEVIAKGRDPRNIPLMMQRICGVCTYSHYL 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+AVE LGI+IP +L+R L + + H+++
Sbjct: 72 KSTMAVEDALGIKIPYNAELVRTLMNAALFMHDHVVHFYHLH 113
>gi|163784473|ref|ZP_02179346.1| hydrogenase large subunit [Hydrogenivirga sp. 128-5-R1-1]
gi|159880261|gb|EDP73892.1| hydrogenase large subunit [Hydrogenivirga sp. 128-5-R1-1]
Length = 360
Score = 96.9 bits (240), Expect = 4e-18, Method: Composition-based stats.
Identities = 35/200 (17%), Positives = 61/200 (30%), Gaps = 25/200 (12%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K +N G + L L + ++ I RG E ++E K L +
Sbjct: 3 KIEKTVLN------RVEGEIELKLIWEKGKIKDA-YIIAPNFRGFEFILENKPLLDTLVI 55
Query: 65 FDRLDYVAPMNQEHAYALAVEKL-----LGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
R+ + A A+E L IE+ + ++IR + I +HL
Sbjct: 56 TPRVCGICGHAHLIATTNALENLYLENGYKIEVSQKAKIIRNITLSCEMIQNHLRWFYLF 115
Query: 120 AMDVGALTP-------------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIP 166
+ E K++ +G H +Y PGGV +
Sbjct: 116 VIPDFLKFNKALEDFYPIKGKKWRKAVELSSKIVKVIAIFAGQWPHTSYSVPGGVMCEPT 175
Query: 167 PELVEDIGCWCDSFPSALND 186
+ + DS +
Sbjct: 176 QTEIIEAISIVDSVLEYFEE 195
>gi|163750852|ref|ZP_02158086.1| quinone-reactive Ni/Fe hydrogenase, large subunit [Shewanella
benthica KT99]
gi|161329410|gb|EDQ00405.1| quinone-reactive Ni/Fe hydrogenase, large subunit [Shewanella
benthica KT99]
Length = 410
Score = 96.9 bits (240), Expect = 5e-18, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 41/101 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E+D V L RG E +++ ++ + R+ V +
Sbjct: 13 IEGHLRVEVEVDENNVITKAWSSSTLWRGIEVILKGRSPMDVGLIVQRICGVCTYSHYRC 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LG +IP+ + +R L + H+++
Sbjct: 73 GIEAVENALGTKIPLNAKFLRSLMQTSLYMHDHIVHFYHLH 113
>gi|227876421|ref|ZP_03994533.1| reducing hydrogenase alpha subunit [Mobiluncus mulieris ATCC 35243]
gi|269975984|ref|ZP_06182988.1| putative reducing hydrogenase alpha subunit [Mobiluncus mulieris
28-1]
gi|306817372|ref|ZP_07451117.1| NAD-reducing hydrogenase [Mobiluncus mulieris ATCC 35239]
gi|227842962|gb|EEJ53159.1| reducing hydrogenase alpha subunit [Mobiluncus mulieris ATCC 35243]
gi|269935812|gb|EEZ92342.1| putative reducing hydrogenase alpha subunit [Mobiluncus mulieris
28-1]
gi|304649813|gb|EFM47093.1| NAD-reducing hydrogenase [Mobiluncus mulieris ATCC 35239]
Length = 430
Score = 96.9 bits (240), Expect = 5e-18, Method: Composition-based stats.
Identities = 52/385 (13%), Positives = 106/385 (27%), Gaps = 42/385 (10%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ + IN G + + ++ G + L R E L+ K+ +A+
Sbjct: 7 QGETMKINLNEIIDPTEGHITVSVDTKGHR--HARFDLQGLPR-VESLLVGKSAAEALKM 63
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
+RL + P+ A A++ L+G+ + +++R L I +H L + G
Sbjct: 64 TERLCGLCPVAHHLAGTRALDGLVGVRVKSYAEMVRRLLHYGSMIEAHSLRFIAVDREAG 123
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
++ A PGG+ + E ++ + ++ A
Sbjct: 124 --------ITLKQFSKQMLTGAGSPGHFPDTATPGGIQVEPKLEDLQVVADGLETA-CAA 174
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ N + +R + E + D
Sbjct: 175 AQRVAVALQN-----QGRGTQVQTEMPFADVALIDDSGYPDVFGTRVRIAHNGEVLEDFD 229
Query: 245 FDIPIGKHG----DCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSA--SDPKIVP 298
F K + ++ + V +L P +A +
Sbjct: 230 FSQWPEKIAEEIPGSPAPRPYIVTLGKKMGRYRVGPVAQLSVGKVSTPRAASLQAQWLSA 289
Query: 299 PKRADMKRSMESLI-------------------HHFKLYTEGYHVPVGEVYAAVEAPKGE 339
P A + R++ SL H + + G V+ P+G
Sbjct: 290 PPDAALARAIISLHVLELSGEIVSQLMKTSENYHLDEQASTTKQWQAGISTGLVDGPRGI 349
Query: 340 FGVYLISDGGNKPYRCKIRAPGYAH 364
+ R I P +
Sbjct: 350 LAHTYEVNAEGIITRAVILTPTAQN 374
>gi|305433127|ref|ZP_07402283.1| quinone-reactive Ni/Fe-hydrogenase [Campylobacter coli JV20]
gi|304443828|gb|EFM36485.1| quinone-reactive Ni/Fe-hydrogenase [Campylobacter coli JV20]
Length = 571
Score = 96.9 bits (240), Expect = 5e-18, Method: Composition-based stats.
Identities = 46/391 (11%), Positives = 78/391 (19%), Gaps = 99/391 (25%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H T ++ L+ L + + H G
Sbjct: 164 GNLGPFANAYYGHPTYRLTPEQNLIVLSHYLECLRIQRIIAQCMAIFGAKNPHPQSLTVG 223
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALN-----DISDLLTGNRIFKQRNV---NIGTVKLED 211
GV + +G + + F + DL+ + + +IG L
Sbjct: 224 GVTCVMDLLSPARMGEYMEKFKEVQDFVNRAYYPDLVMAGKAYADEPSVLNDIGVNNLYT 283
Query: 212 AWGWGFS-GVMIRGSGA----------------------AWDLRKSQPYECYSELDFDIP 248
+ + SG ++P Y
Sbjct: 284 FQEFQLGRDEWLFESGIIKNGDLSKVYEVEEDKITEEATHSWYADNEPLHPYEGKTNPNY 343
Query: 249 IG---------------------KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVG 287
G K + + + + VN G V
Sbjct: 344 TGLVEGESVDHHGNTVHSKVFDTKGKYSWIKAPRYEGNPMQVGPLANIVVNYAKGNQNVV 403
Query: 288 PVSASDPKIVPPKRADM--------KRSMESLIH------------HFKLYTEGYHVP-- 325
PV K + R +E+ I E P
Sbjct: 404 PVVDEFLKETGLPLNAVFSTLGRTAARCLEAKIVANNALKAFRNLVENLKVDESTCAPYV 463
Query: 326 -------VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA---------ME 369
G V P+G + + P + E
Sbjct: 464 IDNSKEYKGRYMGHV--PRGTLSHWCRIK-NGVIENWQAVVPSTWNASPKDANGVGGSYE 520
Query: 370 FLCKGHQLADV------SAILGSLDIVFGEV 394
G ++ADV + S D
Sbjct: 521 QCLIGLKIADVKQPLEIIRKIHSYDPCIACA 551
Score = 86.2 bits (212), Expect = 9e-15, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 32/77 (41%)
Query: 44 LLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLY 103
L RG E +++ + A R+ V + A +AVE LGI P+ L R L
Sbjct: 37 TLWRGIETIVKGRDPRDAGFMTQRICGVCTFSHYKAGIVAVENALGITPPLNALLTRTLM 96
Query: 104 SEIGRILSHLLNVTTQA 120
+ + H+++
Sbjct: 97 NAALFLHDHIVHFYQLH 113
>gi|20378815|gb|AAM20996.1| hydrogenase large subunit [Azorhizobium sp. UPM1161]
gi|20378817|gb|AAM20997.1| hydrogenase large subunit [Azorhizobium caulinodans]
Length = 173
Score = 96.9 bits (240), Expect = 5e-18, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 43/102 (42%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D V R G + RG E +++ + A + +R+ V
Sbjct: 13 IEGHMRCEVNVDANNVIRNAVSTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGCHALT 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE L I+IP LIR + +++ + H+++
Sbjct: 73 SVRAVEDALQIKIPNNAFLIREIMAKVLQWHDHVVHFYHLHA 114
>gi|32265556|ref|NP_859588.1| Ni/Fe hydrogenase alpha subunit [Helicobacter hepaticus ATCC 51449]
gi|32261604|gb|AAP76654.1| Ni/Fe hydrogenase alpha subunit [Helicobacter hepaticus ATCC 51449]
Length = 576
Score = 96.9 bits (240), Expect = 5e-18, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 41/101 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D V + L RG E +++ + A R+ V + A
Sbjct: 13 IEGHLRIEVIVDENNVIQDAFSTSTLWRGLETIVKNRDPRDAGFIVQRICGVCTYSHYKA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI+ P+ L R L + + H ++ T
Sbjct: 73 GITAVENALGIKPPLNAILTRTLMNISLFLHDHAVHFYTLH 113
Score = 91.2 bits (225), Expect = 3e-16, Method: Composition-based stats.
Identities = 42/422 (9%), Positives = 79/422 (18%), Gaps = 110/422 (26%)
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ E E L H T ++ L+ L
Sbjct: 143 ICTGENELKAVQ--------EKVSTFVKQGALGPFANAYWGHKTYHFTPEQNLIVLSHYL 194
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
E + + H GGV + +G W + I+
Sbjct: 195 KLLEVQRVIAQMMAIFGAKNPHPQSLTVGGVTSVMDILDPSRLGEWLTKYKEVTEFINRA 254
Query: 191 LTGNRIFKQR--------NVNIGTVKLEDAWGWGFSGV--MIRGSGA------------- 227
+ I G K ++ G + SG
Sbjct: 255 YWADIIMAAEAYKNEDSVLKGCGV-KNFISFQEMQVGPEEWLFSSGIIKDGDLSKVYPID 313
Query: 228 ---------AWDLRKSQPYECYSELDFDIPIGKH---------------------GDCYD 257
+QP Y G +
Sbjct: 314 ESKITEEAIHSWYEDNQPLHPYDGKTNPQYTGFKDAQTIGPDGKLIDSKVIDENGKYSWI 373
Query: 258 RYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM------------- 304
+ E E + V G + + + + +
Sbjct: 374 KSPRYDGEPMEVGPLASVLVGYASGNKAIVDIVNELLSVTGLPKEALFSTLGRTAARAIE 433
Query: 305 --------KRSMESLIHHFKLYTEGYHVP---------VGEVYAAVEAPKGEFGVYLISD 347
++ +L+ + + P G V P+G ++
Sbjct: 434 CKVVADHGIKAFNALVANIASGDKNTCAPYSIDKNKEYKGRFIGNV--PRGMLSHWVRIK 491
Query: 348 GGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VSAILGSLDIVFG 392
+ P + E G Q+ D + + S D
Sbjct: 492 -NGVIENYQAVVPSTWNAGPRDANGKKGPYEMSLIGTQVKDITQPLEIIRHIHSFDPCIA 550
Query: 393 EV 394
Sbjct: 551 CA 552
>gi|313683173|ref|YP_004060911.1| nickel-dependent hydrogenase large subunit [Sulfuricurvum kujiense
DSM 16994]
gi|313156033|gb|ADR34711.1| nickel-dependent hydrogenase large subunit [Sulfuricurvum kujiense
DSM 16994]
Length = 591
Score = 96.6 bits (239), Expect = 6e-18, Method: Composition-based stats.
Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 2/106 (1%)
Query: 20 AHGVLRLILELD-GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G LR+ +D + + RG E +++ + R+ V
Sbjct: 13 IEGHLRIEAVIDENNTIVDA-YSASTMFRGIETILQGRDPRDCGLLAMRICGVCTGTHYQ 71
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
AVE I IP +++R L + H+++
Sbjct: 72 RSIEAVEDAFDITIPKNARIVRNLIQGALYVHDHVVHFYHLHALDF 117
Score = 95.4 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 39/375 (10%), Positives = 71/375 (18%), Gaps = 109/375 (29%)
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIG------------- 174
L + + + G H GGV + +
Sbjct: 196 HYLQALDIQRDMAKMQAIFGGKNPHPQSIVVGGVTCVQDIQNPARLALFKSLLLAGRKFV 255
Query: 175 --------------------------CWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVK 208
LL R + G K
Sbjct: 256 KQAYLPDVYMAGTMYAGEATDSKATFSELMGGKGVGGTGGGLLNFMSYGDFRLDDTGFYK 315
Query: 209 LEDAWGWGFS--GVM---------IRGSGAAWDLRKSQ-PYECYSELDFDIPIG------ 250
+ G G + K P Y G
Sbjct: 316 SALLFPSGVVLGGDISKVHPLDQEKIAEDVTHAWYKGDKPLHPYEGQTIPEYTGLDKRSD 375
Query: 251 -------KHGDCYDRYLVRMMEMRESVKIIRQCVN-------------------RLLGKN 284
K + + + E + R + +L
Sbjct: 376 GIAYLKTKEKYSWIKSPIYNDTRVEVGPLARMVIGVAAKDKRITKYVTEFLERGKLPVSV 435
Query: 285 KVGPVSASDPKIVPPKR--ADMKRSMESLIHHFKLYTEGYHVP--------VGEVYAAVE 334
V + + + M ++ L + + + E
Sbjct: 436 LFSTVGRTAARAIETSLMSDVMVEWIDELTANVLAGDKSTWTEFDFDKVSVSAKGRGMAE 495
Query: 335 APKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLAD------ 379
AP+G G + +S K + P + L A E G ++A+
Sbjct: 496 APRGALGHW-VSITDGKVANYQAIVPSTWNAAPRDHKGRLGAYEASLIGTKVANPEQPLE 554
Query: 380 VSAILGSLDIVFGEV 394
+ + S D
Sbjct: 555 IIRTIHSFDPCIACA 569
>gi|307700395|ref|ZP_07637434.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16]
gi|307614380|gb|EFN93610.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16]
Length = 430
Score = 96.6 bits (239), Expect = 6e-18, Method: Composition-based stats.
Identities = 52/385 (13%), Positives = 106/385 (27%), Gaps = 42/385 (10%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ + IN G + + ++ G + L R E L+ K+ +A+
Sbjct: 7 QGETMKINLNEIIDPTEGHITVSVDTKGHR--HARFDLQGLPR-VESLLVGKSAAEALKM 63
Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
+RL + P+ A A++ L+G+ + +++R L I +H L + G
Sbjct: 64 TERLCGLCPIAHHLAGTRALDGLVGVRVKSYAEMVRRLLHYGSMIEAHSLRFIAVDREAG 123
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
++ A PGG+ + E ++ + ++ A
Sbjct: 124 --------ITLKQFSKQMLTGAGSPGHFPDTATPGGIQVEPKLEDLQVVADGLETA-CAA 174
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
+ N + +R + E + D
Sbjct: 175 AQRVAVALQN-----QGRGTQVQTEMPFADVALIDDSGYPDVFGTRVRIAHNGEVLEDFD 229
Query: 245 FDIPIGKHG----DCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSA--SDPKIVP 298
F K + ++ + V +L P +A +
Sbjct: 230 FSQWPEKIAEEIPGSPAPRPYIVTLGKKMGRYRVGPVAQLSVGKVSTPRAASLQAQWLSA 289
Query: 299 PKRADMKRSMESLI-------------------HHFKLYTEGYHVPVGEVYAAVEAPKGE 339
P A + R++ SL H + + G V+ P+G
Sbjct: 290 PPDAALARAIISLHVLELSGEIVSQLMKTSESYHLDEQASTTKQWQAGISTGLVDGPRGI 349
Query: 340 FGVYLISDGGNKPYRCKIRAPGYAH 364
+ R I P +
Sbjct: 350 LAHTYEVNAEGIITRAVILTPTAQN 374
>gi|57167622|ref|ZP_00366762.1| hydrogenase (NiFe) large chain Cj1266c [Campylobacter coli RM2228]
gi|57020744|gb|EAL57408.1| hydrogenase (NiFe) large chain Cj1266c [Campylobacter coli RM2228]
Length = 571
Score = 96.6 bits (239), Expect = 6e-18, Method: Composition-based stats.
Identities = 46/391 (11%), Positives = 78/391 (19%), Gaps = 99/391 (25%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H T ++ L+ L + + H G
Sbjct: 164 GNLGPFANAYYGHPTYRLTPEQNLIVLSHYLECLRIQRIIAQCMAIFGAKNPHPQSLTVG 223
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALN-----DISDLLTGNRIFKQRNV---NIGTVKLED 211
GV + +G + + F + DL+ + + +IG L
Sbjct: 224 GVTCVMDLLSPARMGEYMEKFKEVQDFVNRAYYPDLVMAGKAYADEPSVLNDIGVNNLYT 283
Query: 212 AWGWGFS-GVMIRGSGA----------------------AWDLRKSQPYECYSELDFDIP 248
+ + SG ++P Y
Sbjct: 284 FQEFQLGRDEWLFESGIIKNGDLSKVYEVEEDKITEEATHSWYADNEPLHPYEGKTNPNY 343
Query: 249 IG---------------------KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVG 287
G K + + + + VN G V
Sbjct: 344 TGLVEGESVDHHGNTVHSKVFDTKGKYSWIKAPRYEGNPMQVGPLANIVVNYAKGNQNVV 403
Query: 288 PVSASDPKIVPPKRADM--------KRSMESLIH------------HFKLYTEGYHVP-- 325
PV K + R +E+ I E P
Sbjct: 404 PVVDEFLKETGLPLNAVFSTLGRTAARCLEAKIVANNALKAFRNLVENLKVDESTCAPYV 463
Query: 326 -------VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA---------ME 369
G V P+G + + P + E
Sbjct: 464 IDNSKEYKGRYMGHV--PRGTLSHWCRIK-NGVIENWQAVVPSTWNASPKDANGVGGSYE 520
Query: 370 FLCKGHQLADV------SAILGSLDIVFGEV 394
G ++ADV + S D
Sbjct: 521 QCLIGLKIADVKQPLEIIRKIHSYDPCIACA 551
Score = 86.2 bits (212), Expect = 9e-15, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 32/77 (41%)
Query: 44 LLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLY 103
L RG E +++ + A R+ V + A +AVE LGI P+ L R L
Sbjct: 37 TLWRGIETIVKGRDPRDAGFMTQRICGVCTFSHYKAGIVAVENALGITPPLNALLTRTLM 96
Query: 104 SEIGRILSHLLNVTTQA 120
+ + H+++
Sbjct: 97 NAALFLHDHIVHFYQLH 113
>gi|227489484|ref|ZP_03919800.1| hydrogenase (acceptor) [Corynebacterium glucuronolyticum ATCC
51867]
gi|227541078|ref|ZP_03971127.1| hydrogenase [Corynebacterium glucuronolyticum ATCC 51866]
gi|227090662|gb|EEI25974.1| hydrogenase (acceptor) [Corynebacterium glucuronolyticum ATCC
51867]
gi|227183338|gb|EEI64310.1| hydrogenase [Corynebacterium glucuronolyticum ATCC 51866]
Length = 584
Score = 96.6 bits (239), Expect = 7e-18, Method: Composition-based stats.
Identities = 26/144 (18%), Positives = 49/144 (34%), Gaps = 2/144 (1%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ LE D + + + RG E +++ + R+ V A
Sbjct: 14 IEGHLRIELEADDKKISKAWAET-TQFRGIETVVKGHDPRDVWAFVGRICGVCTGTHSIA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKL 139
AVE I +P + + IR L E + H+++ + + + +K
Sbjct: 73 SVAAVEDAFDITLPDQARRIRELILESQEVHDHVVHFYHLHA-LDFVNVVSAAQADPQKA 131
Query: 140 MVFYERASGSRMHAAYFRPGGVHQ 163
+ F + R V +
Sbjct: 132 VDFANSIGSTWSGNNVDRFAEVKK 155
Score = 87.3 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 35/391 (8%), Positives = 72/391 (18%), Gaps = 109/391 (27%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H ++ A++ L + + ++ G H + G P +
Sbjct: 176 HPDYRLPPEANLMAVSHYLDALQFQRSIIRINTVFGGKNPHPNFLVGGMACSIDPDKSET 235
Query: 172 DIGCWCDSFPSALNDISDL-----LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSG 226
D +I D + + SG
Sbjct: 236 VNQVSLDQIKKWTKEIHDFVRNCYFPDAVAIMSVYKDYFDIGQSSPNFLAVGMAGATYSG 295
Query: 227 AAWDLRKS-------------------QPYECYS-------------------------- 241
+ R P+E +
Sbjct: 296 DPAESRIPTIHPEIKPGVFLDGDLHTVHPFEPWKITEGISSAWYTYADGDEAQLTPDVGE 355
Query: 242 --------ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASD 293
++ + + + I R + G++ +
Sbjct: 356 TTPQYTGPTPPYEWLADDQKYTWSKAPRYDGRAMQMGPIARVLLAYNQGESTTVKLVDDA 415
Query: 294 PKI--------------------------------VPPKRADMKRSMESLIHHFKLYTEG 321
K P+ D + + + +
Sbjct: 416 LKTLGITLEQLNSTGGRTLARAVESVTTADYMIEKTLPEFLDGIAHGDIDVFNGSKWEPS 475
Query: 322 YHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA---------HLQAMEFLC 372
+ A VE +G ++ K + P L E
Sbjct: 476 SWPKETKGMAFVEVARGMLSHFIHVKDS-KVENYQAVVPTTWLASPRDKTGQLGPYEEAL 534
Query: 373 KG---HQL------ADVSAILGSLDIVFGEV 394
G H L +V + S D
Sbjct: 535 AGNGQHPLVRNDEPLEVLRTIHSFDPCMACA 565
>gi|213621380|ref|ZP_03374163.1| putative hydrogenase-1 large subunit [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 138
Score = 96.6 bits (239), Expect = 7e-18, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 27/90 (30%), Gaps = 16/90 (17%)
Query: 317 LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQA 367
L+ + EAP+G G ++ K + P + + A
Sbjct: 50 LWEPDTWPTSAKGVGFSEAPRGALGHWIKI-ENQKIDSYQCVVPTTWNAGPRDDKGQIGA 108
Query: 368 MEFLCKGHQLA--D----VSAILGSLDIVF 391
E G +LA D + L S D
Sbjct: 109 YEAALMGTKLAVPDQPLKILRTLHSFDPCL 138
>gi|27382044|ref|NP_773573.1| HupK protein [Bradyrhizobium japonicum USDA 110]
gi|1346327|sp|P48342|HUPK_BRAJA RecName: Full=Hydrogenase expression/formation protein hupK
gi|559727|gb|AAA50826.1| HupK [Bradyrhizobium japonicum]
gi|27355214|dbj|BAC52198.1| HupK protein [Bradyrhizobium japonicum USDA 110]
Length = 362
Score = 96.2 bits (238), Expect = 7e-18, Method: Composition-based stats.
Identities = 58/356 (16%), Positives = 103/356 (28%), Gaps = 53/356 (14%)
Query: 51 KLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRIL 110
+L K +P RL + + + A+ AVE G E R+ R+
Sbjct: 35 RLFAGKPAASLLPVLPRLFSLCSVAHQVAFLSAVEAAQGQEAAPATVRHRLTVVVAERLT 94
Query: 111 SHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELV 170
L + VG +M G + P + +D +
Sbjct: 95 ELLRGLF-----VGRRALDGTSAAAMRAVMQASALLGG----PSEAVPQALRRDAVAQ-- 143
Query: 171 EDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWD 230
+ L + + + +E G S + S
Sbjct: 144 -------------IRTAVGTLGISEDHALASGSALAASVEGCDGRLVSRPLAEPSFLT-- 188
Query: 231 LRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVS 290
++LD + G Y ++ E+ R+ + GP +
Sbjct: 189 --------AANDLDIVARLLADGAAYSDAPDLCGQIPETGVWARRAHREEISSTAAGPAA 240
Query: 291 ASDPKIVPPKRADMKRSMESLIHHFKLYTEG----YHVPVGEVYAAVEAPKGEFGVYLIS 346
+I A++ + L H G Y + G+ AAVE +G ++
Sbjct: 241 RLRARI-----AEVAQLCTWLDHGDADLERGIVASYRLGAGKGAAAVECARGRLYHAVVL 295
Query: 347 DGGNKPYRCKIRAPGYAHL---QAMEFLCKGHQLA------DVS-AILGSLDIVFG 392
D ++ + AP + + KG LA D A++GS D G
Sbjct: 296 DDEDRIVNFEFLAPTEWNFHARGPLVQSLKGATLAAGRPGQDAVRALVGSFDPCVG 351
>gi|20090008|ref|NP_616083.1| F420-nonreducing hydrogenase [Methanosarcina acetivorans C2A]
gi|19914974|gb|AAM04563.1| F420-nonreducing hydrogenase [Methanosarcina acetivorans C2A]
Length = 595
Score = 96.2 bits (238), Expect = 8e-18, Method: Composition-based stats.
Identities = 23/181 (12%), Positives = 44/181 (24%), Gaps = 40/181 (22%)
Query: 254 DCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM-ESLI 312
+++ E + R + + + M + E+ I
Sbjct: 397 YSWNKAPRYDGIPCEVGPLARMLAAKEPLVTGLALAFNENGYSAANVYTRMMARIQETAI 456
Query: 313 H---HFKLYTEGYHV-------------PVGEVYAAVEAPKGEFGVYLISDGGNKPYRCK 356
K TE Y EAP+G G ++ +D +K +
Sbjct: 457 IANELLKWVTEDYDPNGRIAVDTDLSMAKDSTGMGLWEAPRGALGHWVSTDSNSKVVNYQ 516
Query: 357 IRAPGYAHLQ---------AMEFLCKGHQLA--------------DVSAILGSLDIVFGE 393
P +L +E G ++ ++ I S D
Sbjct: 517 PVVPSTWNLSPRDSAGVPGPLEQSLIGAKINAAENSLGVNYTNPVNILHIGRSYDPCVSC 576
Query: 394 V 394
Sbjct: 577 A 577
Score = 93.5 bits (231), Expect = 5e-17, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 44/117 (37%), Gaps = 4/117 (3%)
Query: 20 AHGVLRLILELD-GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G LRL E+D ++ L+ RG E++++ + A R+ V P +
Sbjct: 12 IEGHLRLSTEVDANGVITDSQSSC-LMFRGFERILQNQDPRDAALLVQRICGVCPTSHSL 70
Query: 79 AYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGF 133
A A++ L G+ IP + R + + + SH ++ A
Sbjct: 71 TAANALDDLFGVADTIPKDALVARNINQALNFLASHATHIYILWGPDLANPAYRDVL 127
>gi|292669351|ref|ZP_06602777.1| hydrogenase large subunit [Selenomonas noxia ATCC 43541]
gi|292648986|gb|EFF66958.1| hydrogenase large subunit [Selenomonas noxia ATCC 43541]
Length = 637
Score = 96.2 bits (238), Expect = 8e-18, Method: Composition-based stats.
Identities = 15/114 (13%), Positives = 31/114 (27%), Gaps = 16/114 (14%)
Query: 295 KIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYR 354
K K +S ++ + + + + EAP+G +++ K
Sbjct: 498 KYFFDKLVANIKSGDTRVVNNDKWDPSTWPKEAKGVGLYEAPRGALSHWVVIK-DGKIAN 556
Query: 355 CKIRAPGYAHL---------QAMEFLCKGHQ--LAD----VSAILGSLDIVFGE 393
+ P + A E +AD + + S D
Sbjct: 557 YQAVVPTTWNACPRDDKAGQGAYEKSMMDTPVKIADKPLEIVKAIRSFDPCMAC 610
Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 3/104 (2%)
Query: 20 AHGVLRLILELDG--EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQE 77
G LR+ +++D VE G RG E ++ + A Y R+ V +
Sbjct: 12 IEGHLRVEIQVDEATGKVEDA-ISSGTAWRGLELVMNDRDPRDAWAYIQRICGVCTSSHA 70
Query: 78 HAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE GI IP IR + + H+++
Sbjct: 71 LGCLRAVEDAFGITIPKNAHYIRNIIAACLGHQDHIIHFYHLHA 114
>gi|74356071|dbj|BAE44407.1| hydrogen-uptake [NiFe] hydrogenase large subunit [Sulfurimonas
paralvinella]
Length = 568
Score = 95.8 bits (237), Expect = 9e-18, Method: Composition-based stats.
Identities = 37/378 (9%), Positives = 67/378 (17%), Gaps = 119/378 (31%)
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
L + + + G H GGV + I + + + +
Sbjct: 197 HYLKALDIQRDMAKMQAIFGGKNPHPQSIVVGGVTCVQDIQNPARIALFKNLLKESTEFV 256
Query: 188 SD---------------------------------------LLTGNRIFKQRNVNIGTVK 208
LL R + G K
Sbjct: 257 KKAYLPDVYMAGTMYADEATDSKATFTELMQGKGVGGTGGGLLNYMSYGDFRLDDTGFYK 316
Query: 209 LEDAWGWGFS-----------GVMIRGSGAAWDLRK-SQPYECYSELDFDIPIG------ 250
+ G + P Y G
Sbjct: 317 SALLFPSGIVYGGDISKVEDVDPEKVAEDVTHSWYEGKNPLHPYDGQTIPKYTGLDKRED 376
Query: 251 -------KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKI------- 296
+ + + E + R V ++ + K
Sbjct: 377 GIAYLKTNEKYSWIKSPIYNDTRVEVGPLARMVVGVARKDERITKYVTNFLKRGNLPISV 436
Query: 297 --------------VPPKRADMKRSMESL-------------IHHFKLYTEGYHVPVGEV 329
M + L F +
Sbjct: 437 LFSTVGRTAARAIETELMADVMVEWADELAANVAAGDLSTWTEFDFDKVSVKTK-----G 491
Query: 330 YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLA-- 378
EAP+G G ++ K + P + L A E G ++A
Sbjct: 492 MGLAEAPRGALGHWVKI-ENGKIVNYQAVVPSTWNAAPRDYKGRLGAYEASLIGTKVAEP 550
Query: 379 ----DVSAILGSLDIVFG 392
++ + S D
Sbjct: 551 EQPLEIIRTIHSFDPCIA 568
Score = 94.6 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 19/106 (17%), Positives = 34/106 (32%), Gaps = 2/106 (1%)
Query: 20 AHGVLRLILELD-GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G LR+ +D + + RG E +++ + R+ V
Sbjct: 14 IEGHLRIEAMIDENNTIVDA-YSSSTMFRGIETILQGRDPRDPGLLAMRICGVCTGTHYQ 72
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
VE GI IP +++R L + HL++
Sbjct: 73 RSIEGVEDAFGITIPKNARIVRNLIQGSLYVHDHLVHFYHLHALDF 118
>gi|332308828|ref|YP_004436678.1| nickel-dependent hydrogenase large subunit [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332176157|gb|AEE25410.1| nickel-dependent hydrogenase large subunit [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 627
Score = 95.8 bits (237), Expect = 1e-17, Method: Composition-based stats.
Identities = 38/316 (12%), Positives = 75/316 (23%), Gaps = 31/316 (9%)
Query: 109 ILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVF----YERASGSRMHAAYFRPGGVHQD 164
+ + + T V +E G + P
Sbjct: 296 LQDAITQMKTFVDQVYYPDILAIAGYYKEWGTRGEGLGNFLTYGDLPTTSMDDPASFLFP 355
Query: 165 IPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRG 224
L D+ + ++I + ++ + G E ++G
Sbjct: 356 RGAILGRDLSKVYEVDLDDPSEIQEFVSSSWYRYSGGNTSGLHPFEGQTNLEYTGPRPPY 415
Query: 225 SGAAWDLRKSQ---PYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL 281
S P ++ + + S+ I+ + L
Sbjct: 416 KHLNTSAEYSWLKSPRWKGHAMEVGPLARVLMMYAKKDAAAQDIVNRSLSILDLAPSALF 475
Query: 282 GKNKVGPVSASDPKIVPPKRADMKRSMESLI-------HHFKLYTEGYHVPVGEVYAAVE 334
A + KI+ + D + I + + G+ +E
Sbjct: 476 STLGRTLARAVETKIIVNQLQDWYDQLLGNIARGDTDTFNPLYFDPANWPVKGQGVGVME 535
Query: 335 APKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKG-HQLAD----- 379
AP+G G +L+ K + P + A E + H L D
Sbjct: 536 APRGALGHWLVM-QNGKIDNYQCVVPTTWNAGPRDPNSQAGAYEAALQDKHTLHDPDQPL 594
Query: 380 -VSAILGSLDIVFGEV 394
+ L S D
Sbjct: 595 EILRTLHSFDPCLACA 610
Score = 83.8 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 25/151 (16%), Positives = 43/151 (28%), Gaps = 50/151 (33%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +LDG +++ G RG E +++ + A + R+ V + A
Sbjct: 18 IEGHLRIEADLDGNTIKQA-FSSGTSVRGIELILQGRDPRDAWAFAQRICGVCTLVHGMA 76
Query: 80 YALAVEKLLG-------------------------------------------------I 90
AVE L +
Sbjct: 77 SVRAVEDALRKAWRTNAKLGVAIGHPAMTSMPKGPLQHGKKGKGHRHSGTVIGSLSEAEM 136
Query: 91 EIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
IP QLIR + + H+++
Sbjct: 137 AIPQNAQLIRNIMIGTQYVHDHVMHFYHLHA 167
>gi|20090013|ref|NP_616088.1| F420-nonreducing hydrogenase [Methanosarcina acetivorans C2A]
gi|19914980|gb|AAM04568.1| F420-nonreducing hydrogenase [Methanosarcina acetivorans C2A]
Length = 596
Score = 95.8 bits (237), Expect = 1e-17, Method: Composition-based stats.
Identities = 31/161 (19%), Positives = 56/161 (34%), Gaps = 6/161 (3%)
Query: 20 AHGVLRLILELD-GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G R+ E+D ++ LL RG EK + + A R+ V P+
Sbjct: 12 IEGHYRINTEVDEDGVITDAQ-SNALLFRGFEKFLLNQDPRDAALLTQRICGVCPVCHSI 70
Query: 79 AYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLW-GFEE 135
A A A+++L G+ E+P ++R ++ I SH ++ A +
Sbjct: 71 AAANALDELFGVIEEVPKDALVMRNIHQGFNFIASHAAHIYILWGPDLANPAYHNILMQY 130
Query: 136 REKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCW 176
E + +G R + G+ + I
Sbjct: 131 GEMGNAVWGELAG-RFMPIVNQFNGIRYPAGSSYLGAIREQ 170
Score = 85.4 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 22/187 (11%), Positives = 46/187 (24%), Gaps = 44/187 (23%)
Query: 254 DCYDRYLVRMMEMRESVKIIRQCVNRLL------------GKNKVGPVSASDPKIVPPKR 301
+ + E + R + G + V + ++
Sbjct: 398 YSWAKAPNYGGIPCEVGPLARLMIMGEPLTTGLVQTFQENGYSPVNNYTRMIARMQEVLV 457
Query: 302 ---ADMKRSMESLIHHFKLYTEG--YHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCK 356
MK ++ L K+ EAP+G G ++ + + +
Sbjct: 458 VMSELMKWILQDLEPDAKVAVHTDLSMAKDSTGMGLWEAPRGALGHWIATGSDSMVTLYQ 517
Query: 357 IRAPGYAHL---------QAMEFLCKGHQLA--------D------VSAILGSLDIVFGE 393
P +L +E G +++ D + S D
Sbjct: 518 AVVPSTWNLAPRNSQGIPGPVEQALIGTKISAAENALGVDYANPLGILHTGRSYDPCLAC 577
Query: 394 ----VDR 396
+DR
Sbjct: 578 AVHTIDR 584
>gi|283954830|ref|ZP_06372346.1| Ni/Fe-hydrogenase large subunit [Campylobacter jejuni subsp. jejuni
414]
gi|283793670|gb|EFC32423.1| Ni/Fe-hydrogenase large subunit [Campylobacter jejuni subsp. jejuni
414]
Length = 571
Score = 95.4 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 44/391 (11%), Positives = 76/391 (19%), Gaps = 99/391 (25%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H ++ L+ L + + H G
Sbjct: 164 GNLGPFANAYYGHPTYRLNPEQNLIVLSHYLECLRIQRIIAQCMAIFGAKNPHPQSLTVG 223
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALN-----DISDLLTGNRIFKQR---NVNIGTVKLED 211
GV + +G + F + DL+ + + +IG L
Sbjct: 224 GVTCIMDLLDPARMGEYMVKFQEVQDFVNRAYYPDLIMAGKAYANEASVLNDIGVNNLYT 283
Query: 212 AWGWGFS-GVMIRGSGA----------------------AWDLRKSQPYECYSELDFDIP 248
+ + SG ++P Y
Sbjct: 284 FKEFQIGRDEWLFESGIIKNGDLSKVYEVEEDKITEEATHSWYADNEPLHPYDGKTNPNY 343
Query: 249 IG---------------------KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVG 287
G K + + + + VN G V
Sbjct: 344 TGLVDGESVDHHGNNVHSKVFDTKGKYSWIKAPRYEGNPMQVGPLANIVVNYAKGNKNVV 403
Query: 288 PVSASDPKIVPPKRADM--------KRSMESLIH------------HFKLYTEGYHVP-- 325
PV K + R +E+ I + P
Sbjct: 404 PVVDEFLKETGLPLNAVFSTLGRTAGRCIEAKIVANNALKAFNNLVENLKVDQSTCAPYV 463
Query: 326 -------VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA---------ME 369
G V P+G + + P + E
Sbjct: 464 IDNSKEYKGRYMGHV--PRGTLSHWCRIK-NGVIENWQAVVPSTWNASPKDANGIGGSYE 520
Query: 370 FLCKGHQLADV------SAILGSLDIVFGEV 394
G ++ADV + S D
Sbjct: 521 QCLIGLKIADVKQPLEIIRKIHSYDPCIACA 551
Score = 85.8 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 32/77 (41%)
Query: 44 LLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLY 103
L RG E +++ + A R+ V + A +AVE LGI P+ L R L
Sbjct: 37 TLWRGIETIVKGRDPRDAGFMTQRICGVCTFSHYKAGIVAVENALGITPPLNALLTRTLM 96
Query: 104 SEIGRILSHLLNVTTQA 120
+ + H+++
Sbjct: 97 NAALFLHDHIVHFYQLH 113
>gi|163785064|ref|ZP_02179784.1| nickel-dependent hydrogenase, large subunit [Hydrogenivirga sp.
128-5-R1-1]
gi|159879668|gb|EDP73452.1| nickel-dependent hydrogenase, large subunit [Hydrogenivirga sp.
128-5-R1-1]
Length = 323
Score = 95.4 bits (236), Expect = 2e-17, Method: Composition-based stats.
Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 2/103 (1%)
Query: 20 AHGVLRLILELD-GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G LR+ + +D + + RG E +++ + R+ V
Sbjct: 15 IEGHLRIEVVIDENNKIVDA-YSSSTMWRGIEAILKGRDARDCGLMAMRICGVCTGTHYQ 73
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A E LGI IP +L+R L + HL++
Sbjct: 74 RSIEAAEHALGITIPKNARLVRNLIQGSLYLHDHLVHFYHLHA 116
>gi|57238138|ref|YP_179388.1| quinone-reactive Ni/Fe-hydrogenase, large subunit [Campylobacter
jejuni RM1221]
gi|57166942|gb|AAW35721.1| quinone-reactive Ni/Fe-hydrogenase, large subunit [Campylobacter
jejuni RM1221]
gi|315058699|gb|ADT73028.1| Quinone-reactive Ni/Fe-hydrogenase large chain [Campylobacter
jejuni subsp. jejuni S3]
Length = 571
Score = 95.4 bits (236), Expect = 2e-17, Method: Composition-based stats.
Identities = 44/397 (11%), Positives = 77/397 (19%), Gaps = 111/397 (27%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H + ++ L+ L + + H G
Sbjct: 164 GNLGPFANAYYGHPTYRLSPEQNLIVLSHYLECLRIQRIIAQCMAIFGAKNPHPQSLTVG 223
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSG 219
GV + +G + F + + NR + V +G +A G
Sbjct: 224 GVTCVMDLLDPARMGEYMVKFQEVQDFV------NRAYYPDLVMVGKAYAHEASVLNDIG 277
Query: 220 VMIRGSGAAW-------------------------------------DLRKSQPYECYSE 242
V + + ++P Y
Sbjct: 278 VNNLYTFKEFQIGRDEWLFESGIIKNGDLSKVYEVEEDKITEEATHSWYADNEPLHPYDG 337
Query: 243 LDFDIPIG---------------------KHGDCYDRYLVRMMEMRESVKIIRQCVNRLL 281
G K + + + + VN
Sbjct: 338 KTNPNYTGLVDGESVDHHGNNVHSKVFDTKGKYSWIKAPRYEGNPMQVGPLANIVVNYAK 397
Query: 282 GKNKVGPVSASDPK--------------IVPPKRADMKRSMESLIHHFKLYTEGYHVP-- 325
G V PV K + + K + + F E V
Sbjct: 398 GNQNVVPVVDEFLKETGLPLNAVFSTLGRTAARCIEAKIVANNALKAFNNLVENLKVDQS 457
Query: 326 -------------VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA----- 367
G V P+G + + P +
Sbjct: 458 TCAPYVIDNSKEYKGRYMGHV--PRGTLSHWCRIK-NGVIENWQAVVPSTWNASPKDANG 514
Query: 368 ----MEFLCKGHQLADV------SAILGSLDIVFGEV 394
E G ++ADV + S D
Sbjct: 515 VGGSYEQCLIGLKIADVKQPLEIIRKIHSYDPCIACA 551
Score = 85.8 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 32/77 (41%)
Query: 44 LLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLY 103
L RG E +++ + A R+ V + A +AVE LGI P+ L R L
Sbjct: 37 TLWRGIETIVKGRDPRDAGFMTQRICGVCTFSHYKAGIVAVENALGITPPLNALLTRTLM 96
Query: 104 SEIGRILSHLLNVTTQA 120
+ + H+++
Sbjct: 97 NAALFLHDHIVHFYQLH 113
>gi|299293|gb|AAB25780.1| hydrogenase large subunit [Alcaligenes hydrogenophilus]
Length = 619
Score = 95.0 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 44/102 (43%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + LD V R G + RG E +++ A + +R+ V A
Sbjct: 26 IEGHMRCEVNLDANNVIRNAVSTGTMWRGLEVILKRADPADAWAFVERICRVCTGCHALA 85
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI+IP LIR + ++ ++ H+++
Sbjct: 86 SVRAVEDALGIKIPKNAHLIREMMAKTLQVHDHVVHFYHLHA 127
Score = 86.5 bits (213), Expect = 6e-15, Method: Composition-based stats.
Identities = 18/135 (13%), Positives = 39/135 (28%), Gaps = 26/135 (19%)
Query: 277 VNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIH---HFKLYTEGYHVPVGEVYAAV 333
+ R L G + D +M ++++ + + + V
Sbjct: 477 LARALEAQYCGNMMLDDW-------HEMMANIKAGDLTTANVDKWEPSAWPKEAKGVGHV 529
Query: 334 EAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLA------ 378
AP+G G ++ K + P + + A E +A
Sbjct: 530 AAPRGACGHWIRIK-DGKIENYQCVVPTTWNGSPRDSKGQIGAFEASLMNTPMAKPEEPV 588
Query: 379 DVSAILGSLDIVFGE 393
++ + S D + G
Sbjct: 589 EILRTVHSFDPLPGC 603
>gi|121536061|ref|ZP_01667846.1| nickel-dependent hydrogenase, large subunit [Thermosinus
carboxydivorans Nor1]
gi|121305357|gb|EAX46314.1| nickel-dependent hydrogenase, large subunit [Thermosinus
carboxydivorans Nor1]
Length = 630
Score = 95.0 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 3/104 (2%)
Query: 20 AHGVLRLILELDG--EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQE 77
G LR+ + +D V+ G RG E ++ + A + R V
Sbjct: 12 IEGHLRVEVVVDETSGKVQDA-LSSGTAWRGLELVLRDRDPRDAWLFAQRFCGVCTTVHA 70
Query: 78 HAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A AVE L IEIP IR + + + H+++
Sbjct: 71 LASVRAVEDALNIEIPRNANYIRNIIAAQQMVQDHIIHFYHLHA 114
Score = 85.8 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 16/121 (13%), Positives = 34/121 (28%), Gaps = 16/121 (13%)
Query: 289 VSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG 348
V A K K R+ ++ + + + + E P+G G ++I
Sbjct: 489 VMAYLAKYYFDKLMKNIRAGDTTVANMIKFNPASWPKEAKGVGIHEPPRGALGHWVIIRD 548
Query: 349 GNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLA------DVSAILGSLDIVFGE 393
K + P + A E ++ ++ ++ S D
Sbjct: 549 T-KIANYQAIVPSTWNACPRDGKAGYGAYESAMIDTRVKVAEKPLEILKVIHSFDPCLAC 607
Query: 394 V 394
Sbjct: 608 A 608
>gi|16265956|gb|AAL16684.1|AF358695_1 hydrogenase large subunit [Helicobacter hepaticus]
Length = 112
Score = 95.0 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 41/99 (41%)
Query: 22 GVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYA 81
G LR+ + +D V + L RG E +++ + A R+ V + A
Sbjct: 1 GHLRIEVIVDENNVIQAAFLTSTLWRGLETIVKNRDPRDAGFIVQRICGVCTYSHYKAGI 60
Query: 82 LAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVE LGI+ P+ L R L + + H ++ T
Sbjct: 61 TAVENALGIKPPLNAILTRTLMNISLFLHDHAVHFYTLH 99
>gi|1346494|sp|P33374|MBHL_ALCHY RecName: Full=Uptake hydrogenase large subunit; AltName:
Full=Hydrogenlyase; AltName: Full=Membrane-bound
hydrogenase large subunit
Length = 621
Score = 95.0 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 44/102 (43%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + LD V R G + RG E +++ A + +R+ V A
Sbjct: 26 IEGHMRCEVNLDANNVIRNAVSTGTMWRGLEVILKRADPADAWAFVERICRVCTGCHALA 85
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE LGI+IP LIR + ++ ++ H+++
Sbjct: 86 SVRAVEDALGIKIPKNAHLIREMMAKTLQVHDHVVHFYHLHA 127
Score = 93.1 bits (230), Expect = 7e-17, Method: Composition-based stats.
Identities = 17/135 (12%), Positives = 37/135 (27%), Gaps = 26/135 (19%)
Query: 277 VNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIH---HFKLYTEGYHVPVGEVYAAV 333
+ R L G + D +M ++++ + + + V
Sbjct: 477 LARALEAQYCGNMMLDDW-------HEMMANIKAGDLTTANVDKWEPSAWPKEAKGVGHV 529
Query: 334 EAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLA------ 378
AP+G G ++ K + P + + A E +A
Sbjct: 530 AAPRGACGHWIRIK-DGKIENYQCVVPTTWNGSPRDSKGQIGAFEASLMNTPMAKPEEPV 588
Query: 379 DVSAILGSLDIVFGE 393
++ + S D
Sbjct: 589 EILRTVHSFDPCLAC 603
>gi|86153178|ref|ZP_01071383.1| hydrogenase-2 large chain [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|85844063|gb|EAQ61273.1| hydrogenase-2 large chain [Campylobacter jejuni subsp. jejuni
HB93-13]
Length = 571
Score = 95.0 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 45/391 (11%), Positives = 77/391 (19%), Gaps = 99/391 (25%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H T ++ L+ L + + H G
Sbjct: 164 GNLGPFANAYYGHPTYRLTPEQNLIVLSHYLECLRIQRIIAQCMAIFGAKNPHPQSLTVG 223
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALN-----DISDLLTGNRIFKQR---NVNIGTVKLED 211
GV + +G + F + DL+ + + +IG L
Sbjct: 224 GVTCVMDLLDPARMGEYMVKFQEVQDFVNRAYYPDLVMAGKAYAHEASVLNDIGVNNLYT 283
Query: 212 AWGWGFS-GVMIRGSGA----------------------AWDLRKSQPYECYSELDFDIP 248
+ + SG ++P Y
Sbjct: 284 FKEFQIGRDEWLFESGIIKNGDLSKVYEVEEDKITEEATHSWYADNEPLHPYDGKTNPNY 343
Query: 249 IG---------------------KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVG 287
G K + + + + VN G V
Sbjct: 344 TGLVDGESVDHHGNNVHSKVFDTKGKYSWIKAPRYEGNPMQVGPLANIVVNYAKGNPNVV 403
Query: 288 PVSASDPK--------------IVPPKRADMKRSMESLIHHFKLYTEGYHVP-------- 325
PV K + + K + + F E V
Sbjct: 404 PVVDEFLKETGLPLNAVFSTLGRTAARCIEAKIVANNALKAFNNLVENLKVDQSTCAPYV 463
Query: 326 -------VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA---------ME 369
G V P+G + + P + E
Sbjct: 464 IDNSKEYKGRYMGHV--PRGTLSHWCRIK-NGVIENWQAVVPSTWNASPKDANGVGGSYE 520
Query: 370 FLCKGHQLADV------SAILGSLDIVFGEV 394
G ++ADV + S D
Sbjct: 521 QCLIGLKIADVKQPLEIIRKIHSYDPCIACA 551
Score = 85.8 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 32/77 (41%)
Query: 44 LLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLY 103
L RG E +++ + A R+ V + A +AVE LGI P+ L R L
Sbjct: 37 TLWRGIETIVKGRDPRDAGFMTQRICGVCTFSHYKAGIVAVENALGITPPLNALLTRTLM 96
Query: 104 SEIGRILSHLLNVTTQA 120
+ + H+++
Sbjct: 97 NAALFLHDHIVHFYQLH 113
>gi|157415530|ref|YP_001482786.1| quinone-reactive Ni/Fe-hydrogenase, large subunit [Campylobacter
jejuni subsp. jejuni 81116]
gi|157386494|gb|ABV52809.1| hydrogenase large chain [Campylobacter jejuni subsp. jejuni 81116]
gi|307748170|gb|ADN91440.1| Quinone-reactive Ni/Fe-hydrogenase large chain [Campylobacter
jejuni subsp. jejuni M1]
gi|315932415|gb|EFV11358.1| hydrogen:quinone oxidoreductase [Campylobacter jejuni subsp. jejuni
327]
Length = 571
Score = 95.0 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 45/391 (11%), Positives = 77/391 (19%), Gaps = 99/391 (25%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H T ++ L+ L + + H G
Sbjct: 164 GNLGPFANAYYGHPTYRLTPEQNLIVLSHYLECLRIQRIIAQCMAIFGAKNPHPQSLTVG 223
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALN-----DISDLLTGNRIFKQR---NVNIGTVKLED 211
GV + +G + F + DL+ + + +IG L
Sbjct: 224 GVTCVMDLLDPARMGEYMVKFQEVQDFVNRAYYPDLVMAGKAYAHEASVLNDIGVNNLYT 283
Query: 212 AWGWGFS-GVMIRGSGA----------------------AWDLRKSQPYECYSELDFDIP 248
+ + SG ++P Y
Sbjct: 284 FKEFQIGRDEWLFESGIIKNGDLSKVYEVEEDKITEEATHSWYADNEPLHPYDGKTNPNY 343
Query: 249 IG---------------------KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVG 287
G K + + + + VN G V
Sbjct: 344 TGLVDGESVDHHGNNVHSKVFDTKGKYSWIKAPRYEGNPMQVGPLANIVVNYAKGNPNVV 403
Query: 288 PVSASDPK--------------IVPPKRADMKRSMESLIHHFKLYTEGYHVP-------- 325
PV K + + K + + F E V
Sbjct: 404 PVVDEFLKETGLPLNAVFSTLGRTAARCIEAKIVANNALKAFNNLVENLKVDQSTCAPYV 463
Query: 326 -------VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA---------ME 369
G V P+G + + P + E
Sbjct: 464 IDNSKEYKGRYMGHV--PRGTLSHWCRIK-NGVIENWQAVVPSTWNASPKDANGIGGSYE 520
Query: 370 FLCKGHQLADV------SAILGSLDIVFGEV 394
G ++ADV + S D
Sbjct: 521 QCLIGLKIADVKQPLEIIRKIHSYDPCIACA 551
Score = 85.8 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 32/77 (41%)
Query: 44 LLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLY 103
L RG E +++ + A R+ V + A +AVE LGI P+ L R L
Sbjct: 37 TLWRGIETIVKGRDPRDAGFMTQRICGVCTFSHYKAGIVAVENALGITPPLNALLTRTLM 96
Query: 104 SEIGRILSHLLNVTTQA 120
+ + H+++
Sbjct: 97 NAALFLHDHIVHFYQLH 113
>gi|289064360|gb|ADC80554.1| bidirectional NAD(P)-linked NiFe hydrogenase [uncultured
Rhodobacteraceae bacterium]
Length = 261
Score = 95.0 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 35/253 (13%), Positives = 61/253 (24%), Gaps = 26/253 (10%)
Query: 164 DIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIR 223
D E W D F + L+ F + +
Sbjct: 3 DFLKGYHEVNHKWLDEFAEFPSGHLGLVNKENGFLELYDGNLRALDANGKVILNDVPNDD 62
Query: 224 GSGAAWDLRKSQPYECYSE------LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCV 277
+ + Y + +G + E I + +
Sbjct: 63 YIHHFNEGVEKWSYLKFPYLKDLGKEKGWNRVGPLARLNVCNGIETPFAEEERIIFK--L 120
Query: 278 NRLLGKNKVGPVSASDPKIVPPKRADMKRSM--ESLIHHFKLYTEGYHVPVGEVYAAVEA 335
N S I A+M + + + I L +G GE +EA
Sbjct: 121 ATNGKINNKTMYSHWARLIEMLYCAEMIKKLLNDEDILSNDLIRKGERR--GEGIGIIEA 178
Query: 336 PKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK--------G------HQLADVS 381
P+G + D ++ RC + + +AM K G L V
Sbjct: 179 PRGTLIHHYEVDDKDRITRCNLIVSTTHNNEAMNQAVKWVANNVISGKPEVTEDMLNQVE 238
Query: 382 AILGSLDIVFGEV 394
+ + D
Sbjct: 239 VAIRAYDPCLSCA 251
>gi|332139744|ref|YP_004425482.1| hydrogenase large subunit [Alteromonas macleodii str. 'Deep
ecotype']
gi|327549766|gb|AEA96484.1| hydrogenase large subunit [Alteromonas macleodii str. 'Deep
ecotype']
Length = 625
Score = 95.0 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 17/94 (18%), Positives = 27/94 (28%), Gaps = 17/94 (18%)
Query: 317 LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQA 367
+ G+ +EAP+G G +L+ K + P + A
Sbjct: 516 YFDPTNWPIKGQGVGVMEAPRGALGHWLVM-QNGKIENYQCVVPTTWNAGPRDPNSQAGA 574
Query: 368 MEFLCKG-HQLAD------VSAILGSLDIVFGEV 394
E + H L D + L S D
Sbjct: 575 YEAALQDKHTLHDPDQPLEILRTLHSFDPCLACA 608
Score = 86.9 bits (214), Expect = 5e-15, Method: Composition-based stats.
Identities = 24/149 (16%), Positives = 43/149 (28%), Gaps = 48/149 (32%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E+DG +++ G RG E +++ + A + R+ V + A
Sbjct: 18 IEGHLRIEAEMDGNTIKQA-FSSGTSVRGIELILQGRDPRDAWAFAQRICGVCTLVHGMA 76
Query: 80 YALAVEKLLG-----------------------------------------------IEI 92
AVE + + I
Sbjct: 77 SVRAVEDAIRKAWRSNAKLGVAIGKPSMTSMPKGPMQHGKKGHRQSRTSIGVLSEAEMAI 136
Query: 93 PIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
P QLIR + + H+++
Sbjct: 137 PQNAQLIRNIMIATQYVHDHVMHFYHLHA 165
>gi|121612830|ref|YP_001000942.1| quinone-reactive Ni/Fe-hydrogenase, large subunit [Campylobacter
jejuni subsp. jejuni 81-176]
gi|167005853|ref|ZP_02271611.1| quinone-reactive Ni/Fe-hydrogenase, large subunit [Campylobacter
jejuni subsp. jejuni 81-176]
gi|87249757|gb|EAQ72716.1| quinone-reactive Ni/Fe-hydrogenase, large subunit [Campylobacter
jejuni subsp. jejuni 81-176]
Length = 571
Score = 95.0 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 45/391 (11%), Positives = 77/391 (19%), Gaps = 99/391 (25%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H T ++ L+ L + + H G
Sbjct: 164 GNLGPFANAYYGHPTYRLTPEQNLIVLSHYLECLRIQRIIAQCMAIFGAKNPHPQSLTVG 223
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALN-----DISDLLTGNRIFKQR---NVNIGTVKLED 211
GV + +G + F + DL+ + + +IG L
Sbjct: 224 GVTCVMDLLDPARMGEYMVKFQEVQDFVNRAYYPDLVMAGKAYAHEASVLNDIGVNNLYT 283
Query: 212 AWGWGFS-GVMIRGSGA----------------------AWDLRKSQPYECYSELDFDIP 248
+ + SG ++P Y
Sbjct: 284 FKEFQIGRDEWLFESGIIKNGDLSKVYEVEEDKITEEATHSWYADNEPLHPYDGKTNPNY 343
Query: 249 IG---------------------KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVG 287
G K + + + + VN G V
Sbjct: 344 TGLVDGESVDHHGNNVHSKVFDTKGKYSWIKAPRYEGNPMQVGPLANIVVNYAKGNPNVV 403
Query: 288 PVSASDPK--------------IVPPKRADMKRSMESLIHHFKLYTEGYHVP-------- 325
PV K + + K + + F E V
Sbjct: 404 PVVDEFLKETGLPLNAVFSTLGRTAARCIEAKIVANNALKAFNNLVENLKVDQSTCAPYV 463
Query: 326 -------VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA---------ME 369
G V P+G + + P + E
Sbjct: 464 IDNSKEYKGRYMGHV--PRGTLSHWCRIK-NGVIENWQAVVPSTWNASPKDANGVGGSYE 520
Query: 370 FLCKGHQLADV------SAILGSLDIVFGEV 394
G ++ADV + S D
Sbjct: 521 QCLIGLKIADVKQPLEIIRKIHSYDPCIACA 551
Score = 85.8 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 32/77 (41%)
Query: 44 LLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLY 103
L RG E +++ + A R+ V + A +AVE LGI P+ L R L
Sbjct: 37 TLWRGIETIVKGRDPRDAGFMTQRICGVCTFSHYKAGIVAVENALGITPPLNALLTRTLM 96
Query: 104 SEIGRILSHLLNVTTQA 120
+ + H+++
Sbjct: 97 NAALFLHDHIVHFYQLH 113
>gi|255021689|ref|ZP_05293729.1| Uptake hydrogenase large subunit [Acidithiobacillus caldus ATCC
51756]
gi|254968829|gb|EET26351.1| Uptake hydrogenase large subunit [Acidithiobacillus caldus ATCC
51756]
Length = 437
Score = 95.0 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 39/255 (15%), Positives = 72/255 (28%), Gaps = 36/255 (14%)
Query: 169 LVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAA 228
+ + + + K V+ G + GW G
Sbjct: 181 DEDRYQRPTIETRQQSVYMKAGVYDAKTDKFYPVDQGVTRESTTHGWYDEG----ADPVH 236
Query: 229 WDLRKSQP-----------YECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCV 277
R ++P Y +E+ + R L+ + ES + V
Sbjct: 237 PFNRTTRPMQANNRDFNGAYSWCTEVAHEQLGRLEAGPLSRELIAGGNLGESWQHSDPLV 296
Query: 278 NRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV---GEVYAAVE 334
+ K ++ + + R +E + F+L Y P G+ + A E
Sbjct: 297 LDMYKKMGPSVWLRHFARMHEACK--IYRRIEHCLREFRLDEPFYIKPKEQDGQGWGATE 354
Query: 335 APKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQL---AD--- 379
A +G ++ G K +I AP ++ +E G + AD
Sbjct: 355 AIRGALAHWIEIKG-GKISNYQIIAPTTWNVGPHDARGERGPIEEALIGTPIQNPADPVE 413
Query: 380 VSAILGSLDIVFGEV 394
V + S D
Sbjct: 414 VGHVARSFDSCLVCT 428
>gi|213622494|ref|ZP_03375277.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
Length = 107
Score = 94.6 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 12/82 (14%), Positives = 23/82 (28%), Gaps = 16/82 (19%)
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLA 378
+ +EAP+G +++ + P + + E G +A
Sbjct: 10 KGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPIA 68
Query: 379 D------VSAILGSLDIVFGEV 394
D V + S D
Sbjct: 69 DPAKPLEVVRTIHSFDPCMACA 90
>gi|227489488|ref|ZP_03919804.1| reducing hydrogenase alpha subunit [Corynebacterium
glucuronolyticum ATCC 51867]
gi|227090666|gb|EEI25978.1| reducing hydrogenase alpha subunit [Corynebacterium
glucuronolyticum ATCC 51867]
Length = 370
Score = 94.6 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 41/349 (11%), Positives = 87/349 (24%), Gaps = 31/349 (8%)
Query: 49 TEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIE-IPIRGQLIRVLYSEIG 107
E L+ K L + P++ A A++++ G +P +
Sbjct: 36 VEHLLIGKPVDVVADSVKMLCGICPISHHLAGMRALDQIYGATHLPETALDV-------- 87
Query: 108 RILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP 167
R+L H +V A T ++ + + PGGV Q
Sbjct: 88 RLLLHYASVLDLAAGRLLFTNREVAVAAKKVARDACAAIGMTGHFPSVAVPGGVTQAATE 147
Query: 168 ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA 227
+E + + + +GT + G + G
Sbjct: 148 WDLEPLHRLVGKLKE--------VLNTSPAHVSSGYVGT-NVALVSRNGELNPLGDIVGV 198
Query: 228 AWDLRKSQPYECYSELDFD-IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKV 286
D + + D+ + + + + R + + G
Sbjct: 199 IRDGS----FSSFPVTDWTARVVESCPGSVSPFPLLDGQSYRVGPRARAAFSSVDGDTIA 254
Query: 287 GPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLIS 346
A+ + + SL V++P+G +
Sbjct: 255 ELYDAAVAMVELAAKP-------SLYGDDLRADVSETPVSQTGTGIVDSPRGILVHHYEI 307
Query: 347 DGGNKPYRCKIRAPGYAHLQAMEFLCKG-HQLADVSAILGSLDIVFGEV 394
D +I P + + + H ++ + D V
Sbjct: 308 DENGILTGAQILTPTAQNDPWLTQMLTDAHTEEEMERAIRIADPCVPCV 356
>gi|213024152|ref|ZP_03338599.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Typhi str. 404ty]
Length = 192
Score = 94.6 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
Query: 33 EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEI 92
++ G + RG E +++ + A + +R+ V A A+E +GI++
Sbjct: 3 NVITNA-VSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIQV 61
Query: 93 PIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
P +IR + HL++ A
Sbjct: 62 PDNANIIRNIMLATLWCHDHLVHFYQLAGMD 92
>gi|86150585|ref|ZP_01068808.1| quinone-reactive Ni/Fe-hydrogenase, large subunit [Campylobacter
jejuni subsp. jejuni CF93-6]
gi|88596357|ref|ZP_01099594.1| quinone-reactive Ni/Fe-hydrogenase, large subunit [Campylobacter
jejuni subsp. jejuni 84-25]
gi|218562878|ref|YP_002344657.1| Ni/Fe-hydrogenase large subunit [Campylobacter jejuni subsp. jejuni
NCTC 11168]
gi|85838936|gb|EAQ56202.1| quinone-reactive Ni/Fe-hydrogenase, large subunit [Campylobacter
jejuni subsp. jejuni CF93-6]
gi|88191198|gb|EAQ95170.1| quinone-reactive Ni/Fe-hydrogenase, large subunit [Campylobacter
jejuni subsp. jejuni 84-25]
gi|112360584|emb|CAL35381.1| Ni/Fe-hydrogenase large subunit [Campylobacter jejuni subsp. jejuni
NCTC 11168]
gi|284926491|gb|ADC28843.1| Ni/Fe-hydrogenase large subunit [Campylobacter jejuni subsp. jejuni
IA3902]
gi|315927108|gb|EFV06459.1| Quinone-reactive Ni/Fe-hydrogenase large chain [Campylobacter
jejuni subsp. jejuni DFVF1099]
gi|315929715|gb|EFV08889.1| Quinone-reactive Ni/Fe-hydrogenase, large subunit [Campylobacter
jejuni subsp. jejuni 305]
Length = 571
Score = 94.6 bits (234), Expect = 3e-17, Method: Composition-based stats.
Identities = 44/391 (11%), Positives = 77/391 (19%), Gaps = 99/391 (25%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H + ++ L+ L + + H G
Sbjct: 164 GNLGPFANAYYGHPTYRLSPEQNLIVLSHYLECLRIQRIIAQCMAIFGAKNPHPQSLTVG 223
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALN-----DISDLLTGNRIFKQR---NVNIGTVKLED 211
GV + +G + F + DL+ + + +IG L
Sbjct: 224 GVTCVMDLLDPARMGEYMVKFQEVQDFVNRAYYPDLVMAGKAYAHEASVLNDIGVNNLYT 283
Query: 212 AWGWGFS-GVMIRGSGA----------------------AWDLRKSQPYECYSELDFDIP 248
+ + SG ++P Y
Sbjct: 284 FKEFQIGRDEWLFESGIIKNGDLSKVYEVEEDKITEEATHSWYADNEPLHPYDGKTNPNY 343
Query: 249 IG---------------------KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVG 287
G K + + + + VN G V
Sbjct: 344 TGLVDGESVDHHGNNVHSKVFDTKGKYSWIKAPRYEGNPMQVGPLANVVVNYAKGNQNVV 403
Query: 288 PVSASDPK--------------IVPPKRADMKRSMESLIHHFKLYTEGYHVP-------- 325
PV K + + K + + F E V
Sbjct: 404 PVVDEFLKETGLPLNAVFSTLGRTAARCIEAKIVANNALKAFNNLVENLKVDQSTCAPYV 463
Query: 326 -------VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA---------ME 369
G V P+G + + P + E
Sbjct: 464 IDNSKEYKGRYMGHV--PRGTLSHWCRIK-NGVIENWQAVVPSTWNASPKDANGVGGSYE 520
Query: 370 FLCKGHQLADV------SAILGSLDIVFGEV 394
G ++ADV + S D
Sbjct: 521 QCLIGLKIADVKQPLEIIRKIHSYDPCIACA 551
Score = 85.8 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 32/77 (41%)
Query: 44 LLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLY 103
L RG E +++ + A R+ V + A +AVE LGI P+ L R L
Sbjct: 37 TLWRGIETIVKGRDPRDAGFMTQRICGVCTFSHYKAGIVAVENALGITPPLNALLTRTLM 96
Query: 104 SEIGRILSHLLNVTTQA 120
+ + H+++
Sbjct: 97 NAALFLHDHIVHFYQLH 113
>gi|205356284|ref|ZP_03223050.1| Ni/Fe hydrogenase large subunit [Campylobacter jejuni subsp. jejuni
CG8421]
gi|205345889|gb|EDZ32526.1| Ni/Fe hydrogenase large subunit [Campylobacter jejuni subsp. jejuni
CG8421]
Length = 571
Score = 94.6 bits (234), Expect = 3e-17, Method: Composition-based stats.
Identities = 45/391 (11%), Positives = 77/391 (19%), Gaps = 99/391 (25%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H T ++ L+ L + + H G
Sbjct: 164 GNLGPFANAYYGHPTYRLTPEQNLIVLSHYLECLRIQRIIAQCMAIFGAKNPHPQSLTVG 223
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALN-----DISDLLTGNRIFKQR---NVNIGTVKLED 211
GV + +G + F + DL+ + + +IG L
Sbjct: 224 GVTCVMDLLDPARMGEYMVKFQEVQDFVNRAYYPDLVMAGKAYAHEASVLNDIGVNNLYT 283
Query: 212 AWGWGFS-GVMIRGSGA----------------------AWDLRKSQPYECYSELDFDIP 248
+ + SG ++P Y
Sbjct: 284 FKEFQIGRDEWLFESGIIKNGDLSKVYEVEEDKITEEATHSWYADNEPLHPYDGKTNPNY 343
Query: 249 IG---------------------KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVG 287
G K + + + + VN G V
Sbjct: 344 TGLVDGESVDHHGNNVHSKVFDTKGKYSWIKAPRYEGNPMQVGPLANIVVNYAKGNQNVV 403
Query: 288 PVSASDPK--------------IVPPKRADMKRSMESLIHHFKLYTEGYHVP-------- 325
PV K + + K + + F E V
Sbjct: 404 PVVDEFLKETGLPLNAVFSTLGRTAARCIEAKIVANNALKAFNNLVENLKVDQSTCAPYV 463
Query: 326 -------VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA---------ME 369
G V P+G + + P + E
Sbjct: 464 IDNSKEYKGRYMGHV--PRGTLSHWCRIK-NGVIENWQAVVPSTWNASPKDANGVGGSYE 520
Query: 370 FLCKGHQLADV------SAILGSLDIVFGEV 394
G ++ADV + S D
Sbjct: 521 QCLIGLKIADVKQPLEIIRKIHSYDPCIACA 551
Score = 85.8 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 32/77 (41%)
Query: 44 LLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLY 103
L RG E +++ + A R+ V + A +AVE LGI P+ L R L
Sbjct: 37 TLWRGIETIVKGRDPRDAGFMTQRICGVCTFSHYKAGIVAVENALGITPPLNALLTRTLM 96
Query: 104 SEIGRILSHLLNVTTQA 120
+ + H+++
Sbjct: 97 NAALFLHDHIVHFYQLH 113
>gi|62632273|gb|AAX89152.1| HoxH [Allochromatium vinosum]
Length = 349
Score = 94.6 bits (234), Expect = 3e-17, Method: Composition-based stats.
Identities = 50/284 (17%), Positives = 85/284 (29%), Gaps = 39/284 (13%)
Query: 20 AHGVL-RLILELDGEI--VERVDPHIGLLHRGTEK-LIETKTFLQAVPYFDRLDYVAPMN 75
G R+ L+L GE +E H+ RG EK + E + + + R + P++
Sbjct: 13 IEGHASRITLQL-GEDTGLEDARFHL-TQFRGFEKSVCEGRPYREMPALTARTCGICPVS 70
Query: 76 QEHAYALAVEKLLG-IEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG---------- 124
A A + LLG ++IP G+ +R + + + SH L+ +
Sbjct: 71 HIIASNKACDHLLGAVDIPPTGEKLRRVINLAQIVQSHALSFFHLSSPDLLRVGWDSDPA 130
Query: 125 ----------ALTPPLWGFEEREKLMVFYER-ASGSRMHAAYFRPGGVHQDIPPELVEDI 173
G R+ + G ++H + PGGV + + E E +
Sbjct: 131 TRNIFGVMRQNPELARDGIRLRQIGQTIIAKTLGGKKIHPTWVVPGGVSEPLSVEKRESM 190
Query: 174 GCWCDS--FPSALNDISDLL-TGNRIFKQRNVNIG--------TVKLEDAWGWGFSGVMI 222
T FK + G V + GV+
Sbjct: 191 LRLMPEGALLEIAKRTYAFYKTLVPKFKDEATHFGTQPTLFLSLVTRAQGHLEHYDGVLR 250
Query: 223 RGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEM 266
L P E Y L ++ + Y
Sbjct: 251 VKDAQGRILEDQVPPEEYGRLIGEVAVEDFSYMKFPYYKPQGYP 294
>gi|238926672|ref|ZP_04658432.1| hydrogenase (acceptor) [Selenomonas flueggei ATCC 43531]
gi|238885618|gb|EEQ49256.1| hydrogenase (acceptor) [Selenomonas flueggei ATCC 43531]
Length = 637
Score = 94.2 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 15/114 (13%), Positives = 30/114 (26%), Gaps = 16/114 (14%)
Query: 295 KIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYR 354
K K +S ++ + + + + EAP+G + + K
Sbjct: 498 KYFFDKLVANIKSGDTRVVNNDKWDPSTWPKEAKGVGLYEAPRGALSHWAVIK-DGKIAN 556
Query: 355 CKIRAPGYAHL---------QAMEFLCKGHQ--LAD----VSAILGSLDIVFGE 393
+ P + A E +AD + + S D
Sbjct: 557 YQAVVPTTWNACPRDDAEGHGAYELAMMDTPVKVADKPLEIVKAVRSFDPCMAC 610
Score = 93.9 bits (232), Expect = 5e-17, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 3/104 (2%)
Query: 20 AHGVLRLILELDG--EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQE 77
G LR+ L++D V G RG E ++ + A Y R+ V +
Sbjct: 12 IEGHLRVELQVDEASGKVTDA-ISSGTAWRGLELVMNDRDPRDAWAYIQRICGVCTSSHA 70
Query: 78 HAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE GI IP IR + + H+++
Sbjct: 71 LGCLRAVEDAFGITIPKNAHYIRNIIAACLGHQDHIIHFYHLHA 114
>gi|148926260|ref|ZP_01809945.1| Ni/Fe-hydrogenase large subunit [Campylobacter jejuni subsp. jejuni
CG8486]
gi|145845431|gb|EDK22524.1| Ni/Fe-hydrogenase large subunit [Campylobacter jejuni subsp. jejuni
CG8486]
Length = 571
Score = 94.2 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 44/391 (11%), Positives = 77/391 (19%), Gaps = 99/391 (25%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H + ++ L+ L + + H G
Sbjct: 164 GNLGPFANAYYGHPTYRLSPEQNLIVLSHYLECLRIQRIIAQCMAIFGAKNPHPQSLTVG 223
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALN-----DISDLLTGNRIFKQR---NVNIGTVKLED 211
GV + +G + F + DL+ + + +IG L
Sbjct: 224 GVTCVMDLLDPARMGEYMVKFQEVQDFVNRAYYPDLVMAGKAYAHEASVLNDIGVNNLYT 283
Query: 212 AWGWGFS-GVMIRGSGA----------------------AWDLRKSQPYECYSELDFDIP 248
+ + SG ++P Y
Sbjct: 284 FKEFQIGRDEWLFESGIIKNGDLSKVYEVEEDKITEEATHSWYADNEPLHPYDGKTNPNY 343
Query: 249 IG---------------------KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVG 287
G K + + + + VN G V
Sbjct: 344 TGLVDGESVDHHGNNVHSKVFDTKGKYSWIKAPRYEGNPMQVGPLANIVVNYAKGNQNVV 403
Query: 288 PVSASDPK--------------IVPPKRADMKRSMESLIHHFKLYTEGYHVP-------- 325
PV K + + K + + F E V
Sbjct: 404 PVVDEFLKETGLPLNAVFSTLGRTAARCIEAKIVANNALKAFNNLVENLKVDQSTCAPYV 463
Query: 326 -------VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA---------ME 369
G V P+G + + P + E
Sbjct: 464 IDNSKEYKGRYMGHV--PRGTLSHWCRIK-NGVIENWQAVVPSTWNASPKDANGVGGSYE 520
Query: 370 FLCKGHQLADV------SAILGSLDIVFGEV 394
G ++ADV + S D
Sbjct: 521 QCLIGLKIADVKQPLEIIRKIHSYDPCIACA 551
Score = 85.8 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 32/77 (41%)
Query: 44 LLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLY 103
L RG E +++ + A R+ V + A +AVE LGI P+ L R L
Sbjct: 37 TLWRGIETIVKGRDPRDAGFMTQRICGVCTFSHYKAGIVAVENALGITPPLNALLTRTLM 96
Query: 104 SEIGRILSHLLNVTTQA 120
+ + H+++
Sbjct: 97 NAALFLHDHIVHFYQLH 113
>gi|118430349|ref|YP_874783.1| NADH-plastoquinone oxidoreductase subunit 7 [Agrostis
stolonifera]
gi|118201258|gb|ABK79627.1| NADH-plastoquinone oxidoreductase subunit 7 [Agrostis
stolonifera]
Length = 58
Score = 94.2 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 27/53 (50%), Positives = 35/53 (66%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETK 56
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E +
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENR 58
>gi|21228278|ref|NP_634200.1| F420-nonreducing hydrogenase III, large subunit [Methanosarcina
mazei Go1]
gi|20906737|gb|AAM31872.1| F420-nonreducing hydrogenase III, large subunit [Methanosarcina
mazei Go1]
Length = 596
Score = 94.2 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 46/116 (39%), Gaps = 2/116 (1%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G R+ E+DG V G + RG E+ ++ A R+ V P+ A
Sbjct: 12 IEGHYRINTEVDGNGVITDAQSNGTVFRGFERFLQNHDPRDAALMTMRICGVCPVCHSIA 71
Query: 80 YALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGF 133
+ A+++L G+ ++P ++R ++ + + SH +V A
Sbjct: 72 ASNALDELFGVADQVPKDALVMRNIHQGMNFLASHAAHVYVLFGPDLANPAYHDIL 127
Score = 86.9 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 26/198 (13%), Positives = 52/198 (26%), Gaps = 42/198 (21%)
Query: 239 CYSELDFDIPIG--KHGDCYDRYLVRMMEMRESVKIIRQC---------VNRLLGKNKVG 287
+ D + + + E I R + +N
Sbjct: 381 PEDDPDEIDYTRGSESRYSWIKAPHYDGTPCEVGPISRLLIMEEPLITGLANAFEENGYS 440
Query: 288 PVSASDPKI-----VPPKRADMKRSM-ESLIHHFKL--YTEGYHVPVGEVYAAVEAPKGE 339
PV+ + + ++ + E L + K+ +TE E EAP+G
Sbjct: 441 PVNNYTRMLARMHEILLLIPEIMTWIVEDLTPNAKVAVHTELSMARNSEGMGLWEAPRGA 500
Query: 340 FGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLA--------D--- 379
G ++ S + + P +L +E G +++ D
Sbjct: 501 LGHWVASGSNSMTTLYQAVVPSTWNLAPRNAQGIPSPVEQALIGTKISAAENALGVDYSN 560
Query: 380 ---VSAILGSLDIVFGEV 394
+ S D
Sbjct: 561 PLGILHTARSYDPCLACA 578
>gi|283956661|ref|ZP_06374140.1| quinone-reactive Ni/Fe-hydrogenase, large subunit [Campylobacter
jejuni subsp. jejuni 1336]
gi|283791910|gb|EFC30700.1| quinone-reactive Ni/Fe-hydrogenase, large subunit [Campylobacter
jejuni subsp. jejuni 1336]
Length = 571
Score = 94.2 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 44/391 (11%), Positives = 77/391 (19%), Gaps = 99/391 (25%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H + ++ L+ L + + H G
Sbjct: 164 GNLGPFANAYYGHPTYRLSPEQNLIVLSHYLECLRIQRIIAQCMAIFGAKNPHPQSLTVG 223
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALN-----DISDLLTGNRIFKQR---NVNIGTVKLED 211
GV + +G + F + DL+ + + +IG L
Sbjct: 224 GVTCVMDLLDPARMGEYMVKFQEVQDFVNRAYYPDLVMAGKAYAHEASVLNDIGVNNLYT 283
Query: 212 AWGWGFS-GVMIRGSGA----------------------AWDLRKSQPYECYSELDFDIP 248
+ + SG ++P Y
Sbjct: 284 FKEFQLGRDEWLFESGIIKNGDLSKVYEVEEDKITEEATHSWYADNEPLHPYDGKTNPNY 343
Query: 249 IG---------------------KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVG 287
G K + + + + VN G V
Sbjct: 344 TGLVDGESVDHHGNNVHSKVFDTKGKYSWIKAPRYEGNPMQVGPLANIVVNYAKGNQNVV 403
Query: 288 PVSASDPK--------------IVPPKRADMKRSMESLIHHFKLYTEGYHVP-------- 325
PV K + + K + + F E V
Sbjct: 404 PVVDEFLKETGLPLNAVFSTLGRTAARCIEAKIVANNALKAFNNLVENLKVDQSTCAPYV 463
Query: 326 -------VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA---------ME 369
G V P+G + + P + E
Sbjct: 464 IDNSKEYKGRYMGHV--PRGTLSHWCRIK-NGVIENWQAVVPSTWNASPKDANGVGGSYE 520
Query: 370 FLCKGHQLADV------SAILGSLDIVFGEV 394
G ++ADV + S D
Sbjct: 521 QCLIGLKIADVKQPLEIIRKIHSYDPCIACA 551
Score = 85.8 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 32/77 (41%)
Query: 44 LLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLY 103
L RG E +++ + A R+ V + A +AVE LGI P+ L R L
Sbjct: 37 TLWRGIETIVKGRDPRDAGFMTQRICGVCTFSHYKAGIVAVENALGITPPLNALLTRTLM 96
Query: 104 SEIGRILSHLLNVTTQA 120
+ + H+++
Sbjct: 97 NAALFLHDHIVHFYQLH 113
>gi|89093069|ref|ZP_01166020.1| Nickel-dependent hydrogenase, large subunit [Oceanospirillum sp.
MED92]
gi|89082719|gb|EAR61940.1| Nickel-dependent hydrogenase, large subunit [Oceanospirillum sp.
MED92]
Length = 386
Score = 94.2 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 38/198 (19%), Positives = 69/198 (34%), Gaps = 23/198 (11%)
Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
I GP + G L + L+ D V + L RG E++++ + + A+ Y R+
Sbjct: 4 IVVGPFN-RVEGDLEIKLDTDQGQVTAARVNSP-LFRGFERIMQGQEPMDALVYTPRICG 61
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ ++Q A A A+ L+ +++P+ GQL L + L + M A
Sbjct: 62 ICSVSQSVASARALADLMDLDMPLNGQLATNLVLANENMTDLLTHFYLFFMPDFARGIYS 121
Query: 131 W---------------------GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL 169
R + + +G H+ +PGG + I +
Sbjct: 122 NEPWFDSVESRFKAQKGSAAKVMLPARSEFLHLMGIMAGKWPHSLSLQPGGSAKPIEAQE 181
Query: 170 VEDIGCWCDSFPSALNDI 187
+ SF L
Sbjct: 182 RIRLLAILASFRKFLEHT 199
>gi|255322294|ref|ZP_05363440.1| quinone-reactive Ni/Fe-hydrogenase large chain [Campylobacter
showae RM3277]
gi|255300667|gb|EET79938.1| quinone-reactive Ni/Fe-hydrogenase large chain [Campylobacter
showae RM3277]
Length = 572
Score = 94.2 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 50/415 (12%), Positives = 95/415 (22%), Gaps = 106/415 (25%)
Query: 80 YALAVEKLLGI-EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREK 138
YA +KL + E L H T ++ L+ L +
Sbjct: 144 YATGADKLKEVKERVETFVKKGNLGPFANAYWGHPTYKFTPEQNLIVLSHYLECLRIQRT 203
Query: 139 LMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN-----DISDLLTG 193
+ H GGV + +G + F + DL+
Sbjct: 204 VAQMMAIFGSKNPHPQSLTVGGVTCVMDLLDPARLGEYLTKFQETADFINRAYYPDLVMA 263
Query: 194 NRIFKQR---NVNIGTVKLEDA--------WGWGFSGVMIRGSGAA-------------- 228
+ + ++G L GV++ G +
Sbjct: 264 AKAYGSEPSVLKDVGVSNLFAYDEFLVGRNEYLIQGGVILNGDISKVYEVDGDKITEEAT 323
Query: 229 WDLRKS----QPYECYSEL------------------DFDIPIGKHGDCYDRYLVRMMEM 266
K+ PY+ +E D + K + + +
Sbjct: 324 RAWYKNPAPLHPYDGQTEPNYTGLKDMKTLDGHGKEVDTKVFDEKGKYSWIKAPRYEGKP 383
Query: 267 RESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM---------------------K 305
+ + +N G +V + K +
Sbjct: 384 MQVGPLASIAINYAKGNERVVKIVDKFLKDSGLPLEAVFSTLGRTATRMLEAKLVADHGL 443
Query: 306 RSMESLIHHFKLYTEG---YHVPVGEVYAAVE--------APKGEFGVYLISDGGNKPYR 354
+ SL+ + K E Y + G+ E AP+G +
Sbjct: 444 TAFNSLVENLKTDQETCAKYVIDNGK-----EYKGNFQGNAPRGALSHWCRIK-DGVITN 497
Query: 355 CKIRAPGYAHLQA---------MEFLCKGHQLAD------VSAILGSLDIVFGEV 394
+ P + E G ++AD + + S D
Sbjct: 498 WQAVVPSTWNASPKDAANVRGSYEECLIGLKIADLTKPLEIIRKIHSYDPCIACA 552
Score = 87.3 bits (215), Expect = 4e-15, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 49/124 (39%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D V + L RG E++++ + A + R+ V + A
Sbjct: 14 IEGHLRIEVVVDENNVVKEAYSGSTLWRGIEQVVKGRDPRDAGFFMQRICGVCTFSHYRA 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKL 139
+AVE LGI P+ QL R L + + H+++ A + R+
Sbjct: 74 GIMAVENALGITPPLNAQLTRTLMNNALYMHDHVVHFYQLHGLDWADVVSALSADVRKAS 133
Query: 140 MVFY 143
+
Sbjct: 134 DEAF 137
>gi|304437852|ref|ZP_07397800.1| hydrogenase (acceptor) [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304369152|gb|EFM22829.1| hydrogenase (acceptor) [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 637
Score = 93.9 bits (232), Expect = 4e-17, Method: Composition-based stats.
Identities = 12/93 (12%), Positives = 22/93 (23%), Gaps = 16/93 (17%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------Q 366
+ + EAP+G + + K + P +
Sbjct: 519 DKWDPSTWPKEAKGVGLYEAPRGALSHWAVIK-DGKIANYQAVVPTTWNACPRDDAEGHG 577
Query: 367 AMEFLCKGHQ--LAD----VSAILGSLDIVFGE 393
A E +AD + + S D
Sbjct: 578 AYELAMMDTPVKVADKPLEIVKAVRSFDPCMAC 610
Score = 93.9 bits (232), Expect = 4e-17, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 3/104 (2%)
Query: 20 AHGVLRLILELDG--EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQE 77
G LR+ L++D V G RG E ++ + A Y R+ V +
Sbjct: 12 IEGHLRVELQVDEASGKVTDA-ISSGTAWRGLELVMNDRDPRDAWAYIQRICGVCTSSHA 70
Query: 78 HAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE GI IP IR + + H+++
Sbjct: 71 LGCLRAVEDAFGITIPKNAHYIRNIIAACLGHQDHIIHFYHLHA 114
>gi|163750851|ref|ZP_02158085.1| quinone-reactive Ni/Fe hydrogenase, large subunit [Shewanella
benthica KT99]
gi|161329409|gb|EDQ00404.1| quinone-reactive Ni/Fe hydrogenase, large subunit [Shewanella
benthica KT99]
Length = 171
Score = 93.9 bits (232), Expect = 4e-17, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 16/80 (20%)
Query: 329 VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLAD 379
++ +EAP+G ++ G + P + + E G +L D
Sbjct: 71 GHSMIEAPRGVLSHWIRIKG-GLVENYQAVVPTTWNAGPVDANGKMGPYEAALIGLKLED 129
Query: 380 ------VSAILGSLDIVFGE 393
V I+ S D
Sbjct: 130 PTKPLEVIRIIHSFDPCMAC 149
>gi|86150964|ref|ZP_01069180.1| quinone-reactive Ni/Fe-hydrogenase, large subunit [Campylobacter
jejuni subsp. jejuni 260.94]
gi|315124723|ref|YP_004066727.1| quinone-reactive Ni/Fe-hydrogenase, large subunit [Campylobacter
jejuni subsp. jejuni ICDCCJ07001]
gi|85842134|gb|EAQ59380.1| quinone-reactive Ni/Fe-hydrogenase, large subunit [Campylobacter
jejuni subsp. jejuni 260.94]
gi|315018445|gb|ADT66538.1| quinone-reactive Ni/Fe-hydrogenase, large subunit [Campylobacter
jejuni subsp. jejuni ICDCCJ07001]
Length = 571
Score = 93.9 bits (232), Expect = 4e-17, Method: Composition-based stats.
Identities = 44/391 (11%), Positives = 77/391 (19%), Gaps = 99/391 (25%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H + ++ L+ L + + H G
Sbjct: 164 GNLGPFANAYYGHPTYRLSPEQNLIVLSHYLECLRIQRIIAQCMAIFGAKNPHPQSLTVG 223
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALN-----DISDLLTGNRIFKQR---NVNIGTVKLED 211
GV + +G + F + DL+ + + +IG L
Sbjct: 224 GVTCVMDLLDPARMGEYMVKFQEVQDFVNRAYYPDLVMAGKAYAHEASVLNDIGVNNLYT 283
Query: 212 AWGWGFS-GVMIRGSGA----------------------AWDLRKSQPYECYSELDFDIP 248
+ + SG ++P Y
Sbjct: 284 FKEFQIGRDEWLFESGIIKNGDLSKVYEVEEDKITEEATHSWYADNEPLHPYDGKTNPNY 343
Query: 249 IG---------------------KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVG 287
G K + + + + VN G V
Sbjct: 344 TGLVDGESVDHHGNHVHSKVFDTKGKYSWIKAPRYEGNPMQVGPLANIVVNYAKGNQNVV 403
Query: 288 PVSASDPK--------------IVPPKRADMKRSMESLIHHFKLYTEGYHVP-------- 325
PV K + + K + + F E V
Sbjct: 404 PVVDEFLKETGLPLNAVFSTLGRTAARCIEAKIVANNALKAFNNLVENLKVDQSTCAPYV 463
Query: 326 -------VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA---------ME 369
G V P+G + + P + E
Sbjct: 464 IDNSKEYKGRYMGHV--PRGTLSHWCRIK-NGVIENWQAVVPSTWNASPKDANGVGGSYE 520
Query: 370 FLCKGHQLADV------SAILGSLDIVFGEV 394
G ++ADV + S D
Sbjct: 521 QCLIGLKIADVKQPLEIIRKIHSYDPCIACA 551
Score = 85.8 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 32/77 (41%)
Query: 44 LLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLY 103
L RG E +++ + A R+ V + A +AVE LGI P+ L R L
Sbjct: 37 TLWRGIETIVKGRDPRDAGFMTQRICGVCTFSHYKAGIVAVENALGITPPLNALLTRTLM 96
Query: 104 SEIGRILSHLLNVTTQA 120
+ + H+++
Sbjct: 97 NAALFLHDHIVHFYQLH 113
>gi|153951533|ref|YP_001397644.1| quinone-reactive Ni/Fe-hydrogenase, large subunit [Campylobacter
jejuni subsp. doylei 269.97]
gi|152938979|gb|ABS43720.1| quinone-reactive Ni/Fe-hydrogenase, large subunit [Campylobacter
jejuni subsp. doylei 269.97]
Length = 571
Score = 93.9 bits (232), Expect = 4e-17, Method: Composition-based stats.
Identities = 45/391 (11%), Positives = 76/391 (19%), Gaps = 99/391 (25%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L H T ++ L+ L + + H G
Sbjct: 164 GNLGPFANAYYGHPTYRLTPEQNLIVLSHYLECLRIQRIIAQCMAIFGAKNPHPQSLTVG 223
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALN-----DISDLLTGNRIFKQR---NVNIGTVKLED 211
GV + +G + F + DL + + +IG L
Sbjct: 224 GVTCVMDLLDPARMGEYMVKFQEVQDFVNRAYYPDLAMAGKAYAHEASVLNDIGVNNLYT 283
Query: 212 AWGWGFS-GVMIRGSGA----------------------AWDLRKSQPYECYSELDFDIP 248
+ + SG ++P Y
Sbjct: 284 FKEFQIGRDEWLFESGIIKNGDLSKVYEVEEDKITEEATHSWYADNEPLHPYEGKTNPNY 343
Query: 249 IG---------------------KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVG 287
G K + + + + VN G V
Sbjct: 344 TGLVDGESMDHHGNNVHSKVFDTKGKYSWIKAPRYEGNPMQVGPLANIVVNYAKGNPNVV 403
Query: 288 PVSASDPK--------------IVPPKRADMKRSMESLIHHFKLYTEGYHVP-------- 325
PV K + + K + + F E V
Sbjct: 404 PVVDEFLKETGLPLNAVFSTLGRTAARCIEAKIVANNALKAFNNLVENLKVDQSTCAPYV 463
Query: 326 -------VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA---------ME 369
G V P+G + + P + E
Sbjct: 464 IDNSKEYKGRYMGHV--PRGTLSHWCRIK-NGVIENWQAVVPSTWNASPKDANGVGGSYE 520
Query: 370 FLCKGHQLADV------SAILGSLDIVFGEV 394
G ++ADV + S D
Sbjct: 521 QCLIGLKIADVKQPLEIIRKIHSYDPCIACA 551
Score = 84.2 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 32/77 (41%)
Query: 44 LLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLY 103
L RG E +++ + A R+ V + A +AVE LGI P+ L R L
Sbjct: 37 TLWRGIETIVKGRDPRDAGFMTQRICGVCTFSHYKAGIVAVENALGITPPLNALLTRTLM 96
Query: 104 SEIGRILSHLLNVTTQA 120
+ + H+++
Sbjct: 97 NATLFLHDHIVHFYQLH 113
>gi|144898856|emb|CAM75720.1| hydrogenase expression/formation protein HupK [Magnetospirillum
gryphiswaldense MSR-1]
Length = 381
Score = 93.5 bits (231), Expect = 5e-17, Method: Composition-based stats.
Identities = 48/360 (13%), Positives = 93/360 (25%), Gaps = 31/360 (8%)
Query: 51 KLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRIL 110
+L + + + + + Q A+EK I + R L +
Sbjct: 33 RLFAKRPPTEVLHLLPTVFSLCGTAQAVTGLNAMEKAAAITASPAQKAARTLLVLAETVT 92
Query: 111 SHLLNVTTQAMDV-GALTPPLWGFEEREKLM--VFYERASGSRMHAAYFRPGGVHQDIPP 167
H L + + G R L G + G + D
Sbjct: 93 EHGLTIARDWPALAGGQPRLDHAKRIRGALAGLRGTLYPQGDWLSPGG---GTLTADCDR 149
Query: 168 ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA 227
+DI +L+ ++ + G G
Sbjct: 150 ICAAIDQARQAITQLMGHDIDELVLPIAFQ-------AWLERDPTHLPGLVQAKGWA-GI 201
Query: 228 AWDLRKSQPYECYSELDFDIPIGKHGDCYDR---YLVRMMEMRESVKIIRQCVNRLLGKN 284
P +L + + G R + ++ L+ +
Sbjct: 202 GAAPFLPMPEMGPPDLAARMATDRDGQYLARPDCAGRVFETGSLAHWSWHPLISDLMDRF 261
Query: 285 KVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP--VGEVYAAVEAPKGEFGV 342
G + ++V A+ R ME L+ K +P GE EA +G
Sbjct: 262 GAGLLPRLAARLV--ALAEGLREMEELVRDLKP-EPACSLPGLSGEGLTLTEAARGLLAH 318
Query: 343 YLISDGGNKPYRCKIRAPGYAHL---QAMEFLCKGHQL-ADVS----AILGSLDIVFGEV 394
++ + K + +I AP + + G D+ ++ +LD
Sbjct: 319 RVVLN-DGKISQYQILAPTEWNFHPEGPLARALHGLPAGPDLEWKARLLINALDPCVACA 377
>gi|227541082|ref|ZP_03971131.1| reducing hydrogenase alpha subunit [Corynebacterium
glucuronolyticum ATCC 51866]
gi|227183342|gb|EEI64314.1| reducing hydrogenase alpha subunit [Corynebacterium
glucuronolyticum ATCC 51866]
Length = 370
Score = 93.5 bits (231), Expect = 5e-17, Method: Composition-based stats.
Identities = 41/349 (11%), Positives = 87/349 (24%), Gaps = 31/349 (8%)
Query: 49 TEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIE-IPIRGQLIRVLYSEIG 107
E L+ K L + P++ A A++++ G +P +
Sbjct: 36 VEHLLIGKPVDVVADSVKMLCGICPISHHLAGMRALDQIYGATHLPETALDV-------- 87
Query: 108 RILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP 167
R+L H +V A T ++ + + PGGV Q
Sbjct: 88 RLLLHYASVLDLAAGRLLFTNREVAVAAKKVARDACAAIGMTGHFPSVAVPGGVTQAATE 147
Query: 168 ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGA 227
+E + + + +GT + G + G
Sbjct: 148 WDLEPLHRLVGKLKE--------VLNTSPAHVSSGYVGT-NVALVSRNGELNPLGDIVGV 198
Query: 228 AWDLRKSQPYECYSELDFD-IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKV 286
D + + D+ + + + + R + + G
Sbjct: 199 IRDGS----FSSFPVTDWTARVVESRPGSVSPFPLLDGQSYRVGPRARAAFSCVDGDTIA 254
Query: 287 GPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLIS 346
A+ + + SL V++P+G +
Sbjct: 255 ELYDAAVAMVELAAKP-------SLYGDDLRADVSETPVSQTGTGIVDSPRGILVHHYEI 307
Query: 347 DGGNKPYRCKIRAPGYAHLQAMEFLCKG-HQLADVSAILGSLDIVFGEV 394
D +I P + + + H ++ + D V
Sbjct: 308 DENGILTGAQILTPTAQNDPWLTQMLTDAHTEEEMERAIRIADPCVPCV 356
>gi|21228272|ref|NP_634194.1| F420-nonreducing hydrogenase II, large subunit [Methanosarcina
mazei Go1]
gi|602583|emb|CAA58177.1| F420-nonreducing hydrogenase [Methanosarcina mazei Go1]
gi|20906731|gb|AAM31866.1| F420-nonreducing hydrogenase II, large subunit [Methanosarcina
mazei Go1]
gi|1093483|prf||2104206E NiFe hydrogenase:SUBUNIT=large
Length = 591
Score = 93.5 bits (231), Expect = 6e-17, Method: Composition-based stats.
Identities = 27/226 (11%), Positives = 69/226 (30%), Gaps = 44/226 (19%)
Query: 20 AHGVLRLILELD-GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G R+ E+D ++ L+ RG E++++ + A R+ V P++
Sbjct: 12 IEGHQRISTEVDANGVITDAQ-SSSLIFRGFERILQHQDPRDAAFLTQRICGVCPLSHGL 70
Query: 79 AYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQA---------------- 120
A+++L G+ +P ++R ++ + + SH ++
Sbjct: 71 TATNALDELYGVAEHVPKDALVMRNIFQGLNMVASHATHIYVLFGPDLANPAYKKVLTPL 130
Query: 121 ------------------------MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYF 156
+ A + + E+++L +G +
Sbjct: 131 GDTGSAVWDEMLGRFAPISYKMDGAAIPAGSSYMAAIPEKKRLQEMIALIAGRMPGPSSL 190
Query: 157 RPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNV 202
PGG + + + ++ + + N +
Sbjct: 191 YPGGYTYPATVADITKLSTYYLQVMDFVSAHTLKVDFNTWIENTYK 236
Score = 86.5 bits (213), Expect = 7e-15, Method: Composition-based stats.
Identities = 24/179 (13%), Positives = 48/179 (26%), Gaps = 39/179 (21%)
Query: 254 DCYDRYLVRMMEMRESVKIIRQC---------VNRLLGKNKVGPVSASDPKIVPPKRADM 304
+D+ E + R + L +N P + +++ +
Sbjct: 396 YSWDKAPRYDGIAGEVGPLARMLNIKEPLVTGLALALAENGYSP-ANVYTRMLARMQETA 454
Query: 305 KRSMESLIHHFKLYTEGYHV---------PVGEVYAAVEAPKGEFGVYLISDGGNKPYRC 355
+ E L Y G + + EAP+G G ++ ++G K
Sbjct: 455 ILAYELLNWVTVDYEPGGKISVPLDFNAAKDSQGMGLWEAPRGALGHWISTNGSGKVANY 514
Query: 356 KIRAPGYAHLQ---------AMEFLCKGHQLADV-------SAIL----GSLDIVFGEV 394
+ PG + +E G ++ V + S D
Sbjct: 515 QCIVPGSWLMSPRDSNGIPGPLEQSLIGSKINPVGEVDYTNPVGIFHMGRSYDPCISCA 573
>gi|282901338|ref|ZP_06309263.1| Nickel-dependent hydrogenase, large subunit [Cylindrospermopsis
raciborskii CS-505]
gi|281193617|gb|EFA68589.1| Nickel-dependent hydrogenase, large subunit [Cylindrospermopsis
raciborskii CS-505]
Length = 531
Score = 93.1 bits (230), Expect = 6e-17, Method: Composition-based stats.
Identities = 31/188 (16%), Positives = 56/188 (29%), Gaps = 22/188 (11%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + +E++ V H L RG E ++ K + R+ + + +
Sbjct: 14 VEGDLDVRVEIEDGYVTNAWTHA-ELFRGFEIILRDKDPQAGLIVTPRICGICGGSHLSS 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRIL---------------------SHLLNVTT 118
+ A++ E+P L R L + I SH +
Sbjct: 73 ASWALDTAWQTEVPRNAILARNLGQIVETIQSIPRYFYGLFAIDLTHQNYRSSHFYDEAC 132
Query: 119 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCD 178
+ G K + Y G H++Y PGGV + +
Sbjct: 133 RRFAAFTGKSYELGVTISAKPVEIYALLGGQWPHSSYMVPGGVMCAPSLSDITRAWGMLE 192
Query: 179 SFPSALND 186
F + +
Sbjct: 193 YFRTNWLE 200
Score = 92.7 bits (229), Expect = 8e-17, Method: Composition-based stats.
Identities = 31/206 (15%), Positives = 53/206 (25%), Gaps = 39/206 (18%)
Query: 227 AAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYL-----VRMMEMRESVKIIRQCVNRLL 281
+W +Q + + + + E+ + RQ V
Sbjct: 309 HSWYDEGTQDWHPSDRKTSPTINNQKDFVGAYSWSSAVLHQDLGRLEAGPLARQLVAGGN 368
Query: 282 GKNK---------------VGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP- 325
G G + + R E + FKL Y P
Sbjct: 369 GGETWQHYDPFILDVFKKMGGASVHLRQLARVHELVKLYRQAERCLREFKLNEPWYIKPQ 428
Query: 326 --VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKG 374
G+ + A EA +G ++ K ++ APG + L +E G
Sbjct: 429 EKDGKGWGATEAARGALCHWIEI-AEGKIKSYQVIAPGTWNIGPRDGNGHLGPVEQALIG 487
Query: 375 HQLAD------VSAILGSLDIVFGEV 394
+ D V + S D
Sbjct: 488 TPITDPTDPVEVGHVARSFDSCLVCT 513
>gi|73669346|ref|YP_305361.1| methanophenazine-reducing hydrogenase large subunit [Methanosarcina
barkeri str. Fusaro]
gi|72396508|gb|AAZ70781.1| methanophenazine-reducing hydrogenase, large subunit
[Methanosarcina barkeri str. Fusaro]
Length = 596
Score = 93.1 bits (230), Expect = 7e-17, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 2/117 (1%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G R+ E++ E V GL RG E+L++ + A R+ V P++ A
Sbjct: 12 IEGHYRINTEVNEEGVITDAQSNGLQLRGFERLLQHQDPRDASLLSQRICGVCPVSHGIA 71
Query: 80 YALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFE 134
A A++ L G+ E+PI G L+R ++ + I SH ++ A
Sbjct: 72 AANALDDLFGVAGEVPIDGLLMRNVHQALNFIASHAAHIYLLWGPDLANPAYRDILA 128
Score = 84.2 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 19/212 (8%), Positives = 49/212 (23%), Gaps = 29/212 (13%)
Query: 209 LEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRE 268
+ G + + Y +D + G R ++ +
Sbjct: 370 KDRPPWNGVTVPEGNPENIDYTKGSKSRYSWTKAPHYDGIPCEVGPL-ARMIIMGEPLVT 428
Query: 269 SVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHV---P 325
+ Q + + + + ++ + + I +
Sbjct: 429 GLVKTFQ--DNGYYPVNNYTRMIARMQEILVVVPELTKWLTQDIQAGGKVAVHTDLSMAK 486
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQ 376
EAP+G G ++ + + + P +L +E G +
Sbjct: 487 SSTGMGLWEAPRGALGHWVATGPDSMVTLYQAVVPSTWNLAPRNSQEIPSPVEQALIGTK 546
Query: 377 LA--------D------VSAILGSLDIVFGEV 394
++ D + S D
Sbjct: 547 ISAAENALGVDYSNPLGILHTARSYDPCLACA 578
>gi|159106910|ref|YP_001531328.1| NADH-plastoquinone oxidoreductase subunit 7 [Lolium perenne]
gi|158934444|emb|CAO86022.1| NADH-plastoquinone oxidoreductase subunit 7 [Lolium perenne]
Length = 59
Score = 93.1 bits (230), Expect = 7e-17, Method: Composition-based stats.
Identities = 27/52 (51%), Positives = 34/52 (65%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIET 55
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ E
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAEN 57
>gi|94265051|ref|ZP_01288819.1| Hydrogen:quinone oxidoreductase [delta proteobacterium MLMS-1]
gi|93454484|gb|EAT04772.1| Hydrogen:quinone oxidoreductase [delta proteobacterium MLMS-1]
Length = 326
Score = 92.7 bits (229), Expect = 8e-17, Method: Composition-based stats.
Identities = 28/193 (14%), Positives = 55/193 (28%), Gaps = 20/193 (10%)
Query: 220 VMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMR----ESVKIIRQ 275
+ R A + R Y + + + G R + R E + R+
Sbjct: 132 PLNRQEFQAENERLDGKYSWIRAPRYHGEVMEVGAV-ARVINSYHHNRAVKEEVDRTNRE 190
Query: 276 CVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEA 335
L N V +K ++ + ++E EA
Sbjct: 191 LGLTLADYNSVMGRHLGRYLSALLIIERLKEQVDQVKDGVLGFSELEVPRNAVGVGITEA 250
Query: 336 PKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLAD------V 380
+G G +L +DG ++ P + A+E + +G ++ +
Sbjct: 251 SRGALGHWLATDGNGLIKNYEMVMPSTWNFSPRDAAGKPGAVEKMLQGTRIKNPEQPLEA 310
Query: 381 SAILGSLDIVFGE 393
+ I S D
Sbjct: 311 ARIARSADPCIAC 323
>gi|86739787|ref|YP_480187.1| hydrogen:quinone oxidoreductase [Frankia sp. CcI3]
gi|86566649|gb|ABD10458.1| Hydrogen:quinone oxidoreductase [Frankia sp. CcI3]
Length = 535
Score = 92.7 bits (229), Expect = 9e-17, Method: Composition-based stats.
Identities = 32/238 (13%), Positives = 64/238 (26%), Gaps = 29/238 (12%)
Query: 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDR 67
+ +N P G L + + +D +V + RG E ++ K + R
Sbjct: 3 TVDLNVSPL-GRVEGDLDVRVTIDDGVVTSAWTEAA-MFRGFEIILRGKDPQAGLIVTPR 60
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV---- 123
+ + + + A A++ E+P L+R + + S
Sbjct: 61 ICGICGGSHLYKSAYALDVAWRTEMPPNATLVRNIAQACETLQSIPRCFYALFAIDLTNR 120
Query: 124 -----------------GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIP 166
+ K + Y G H+++ PGGV
Sbjct: 121 KYASSPLYEEAVRRFAPYTGSSYGPAVVLSAKPVEVYAIFGGQWPHSSFMVPGGVMCAPT 180
Query: 167 PELVEDIGCWCDSF------PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
V + + L + NR ++ + + GF
Sbjct: 181 LSDVTRSIAILEHWKVNWLEKQWLGCSVERWLANRTWQDVLAWVDENPAQHDSDCGFF 238
Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/225 (10%), Positives = 57/225 (25%), Gaps = 27/225 (12%)
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
R+ + + G + + G R+ Y +++P
Sbjct: 296 FDQARVREDVTHSFYEGTEARHPFDGETRPIDPARG-----REQGKYSWAKSPRYEVPNH 350
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQ----CVNRLLGKNKVGPVSASDPKIVPPKR--ADM 304
+ L R + Q +L + ++ R
Sbjct: 351 GYLPLEAGPLARRVAAAAPGAGAHQDDDPLFGDILAAIGPSVMVRLLARMHEAARYYQWT 410
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
+ ++ L + + G + + EA +G +++ K ++ P +
Sbjct: 411 RAWLDQLDLREPFHLKPVEYTEGRGFGSTEAARGSLSDWIVI-EDGKIANYQVVTPTAWN 469
Query: 365 L---------QAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
+ +E G + D + + S D
Sbjct: 470 IGPRDGSEAPGPIEQALVGTPIVDPENPIELGHVARSFDSCLVCT 514
>gi|83956303|ref|ZP_00964744.1| copper-translocating P-type ATPase [Sulfitobacter sp. NAS-14.1]
gi|83839524|gb|EAP78705.1| copper-translocating P-type ATPase [Sulfitobacter sp. NAS-14.1]
Length = 644
Score = 92.7 bits (229), Expect = 1e-16, Method: Composition-based stats.
Identities = 64/402 (15%), Positives = 121/402 (30%), Gaps = 91/402 (22%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETK----- 56
D + + FGP P LRL L LDG+ V + + +
Sbjct: 323 DGLQMDWIEVPFGPFFPGLPAGLRLTLTLDGDTVAGSEVRS----------LVGRAELVD 372
Query: 57 -TFLQAVPYFDRLDY---VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSH 112
++ + +RL ++P+ A+E+ ++ + R E RI SH
Sbjct: 373 GPQMRVADFVERLAAMMPLSPVAYRTLACAAIEEAASVDPGHDARRGRAAAVERERIASH 432
Query: 113 LLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVED 172
L + + G L + +
Sbjct: 433 LNWLAEFGLQSGFLWLAARAGALQLAVQG------------------------------A 462
Query: 173 IGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLR 232
+ A+ ++ + + + R I + + SG + R G D R
Sbjct: 463 DVAGIAAQAGAIRRLTRRVQAAPLMRMRLRRIARIGKDTP----ASGPVDRARGGGSDAR 518
Query: 233 KSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSAS 292
P +L F+ + GD R +R E+ +S+ +I
Sbjct: 519 TGDPTL--KDLGFETRVRNGGDALARLRLRCDEIAQSLDVIAAA---------------- 560
Query: 293 DPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKP 352
+I P+ D+ R GE A +E P+G + + +
Sbjct: 561 -GRIAVPQVPDVDRV------------------SGEGAARIETPRGAAQLRVKLT-DGRV 600
Query: 353 YRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEV 394
+ P ++ +E + +L D + SLD+ E+
Sbjct: 601 VEADLDTPSDVNIALVETVTAQQELGDALTAVVSLDLSPWEI 642
>gi|213852419|ref|ZP_03381951.1| hydrogenase 4, subunit [Salmonella enterica subsp. enterica serovar
Typhi str. M223]
Length = 82
Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 338 GEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GE + + K +R + RA YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 1 GEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 59
>gi|599899|emb|CAA58114.1| F420-nonreducing hydrogenase I [Methanosarcina mazei Go1]
gi|1093480|prf||2104206B NiFe hydrogenase
Length = 591
Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/208 (12%), Positives = 60/208 (28%), Gaps = 44/208 (21%)
Query: 20 AHGVLRLILELD-GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G R+ E+D ++ L+ RG E++++ + A R+ V P++
Sbjct: 12 IEGHQRISTEVDANGVITDAQ-SSSLIFRGFERILQHQDPRDAAFLTQRICGVCPLSHGL 70
Query: 79 AYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFE-- 134
A+++L G+ +P ++R ++ + SH ++ A
Sbjct: 71 TATNALDELYGVAEHVPKDALVMRNIFQGLNMAASHATHIYVLWAPDLANPAYKKVLTPL 130
Query: 135 --------------------------------------EREKLMVFYERASGSRMHAAYF 156
E+++L +G +
Sbjct: 131 GDTGNAVWDEMLGRFAPISYKMDGVPIPAGSSYLAAIPEKKRLQEMIALIAGRMPGPSAL 190
Query: 157 RPGGVHQDIPPELVEDIGCWCDSFPSAL 184
PGG + + + +
Sbjct: 191 YPGGYTYPATVADITKLSTYYLQIMDFI 218
Score = 85.8 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/179 (13%), Positives = 48/179 (26%), Gaps = 39/179 (21%)
Query: 254 DCYDRYLVRMMEMRESVKIIRQC---------VNRLLGKNKVGPVSASDPKIVPPKRADM 304
+D+ E + R + L +N P + +++ +
Sbjct: 396 YSWDKAPRYDGIAGEVGPLARMLNIKEPLVTGLALALAENGYSP-ANVYTRMLARIQETA 454
Query: 305 KRSMESLIHHFKLYTEGYHV---------PVGEVYAAVEAPKGEFGVYLISDGGNKPYRC 355
+ E L Y G + + EAP+G G ++ ++G K
Sbjct: 455 ILAYELLNWVTVDYEPGGKISVPLDFNAAKDSQGMGLWEAPRGALGHWISTNGSGKVANY 514
Query: 356 KIRAPGYAHLQ---------AMEFLCKGHQLADV-------SAIL----GSLDIVFGEV 394
+ PG + +E G ++ V + S D
Sbjct: 515 QCIVPGSWLMSPRDSNGIPGPLEQSLIGSKINPVGEVDYTNPVGIFHMGRSYDPCISCA 573
>gi|21228415|ref|NP_634337.1| F420-nonreducing hydrogenase I, large subunit [Methanosarcina mazei
Go1]
gi|20906891|gb|AAM32009.1| F420-nonreducing hydrogenase I, large subunit [Methanosarcina mazei
Go1]
Length = 591
Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/208 (12%), Positives = 60/208 (28%), Gaps = 44/208 (21%)
Query: 20 AHGVLRLILELD-GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G R+ E+D ++ L+ RG E++++ + A R+ V P++
Sbjct: 12 IEGHQRISTEVDANGVITDAQ-SSSLIFRGFERILQHQDPRDAAFLTQRICGVCPLSHGL 70
Query: 79 AYALAVEKLLGI--EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFE-- 134
A+++L G+ +P ++R ++ + SH ++ A
Sbjct: 71 TATNALDELYGVAEHVPKDALVMRNIFQGLNMAASHATHIYVLWAPDLANPAYKKVLTPL 130
Query: 135 --------------------------------------EREKLMVFYERASGSRMHAAYF 156
E+++L +G +
Sbjct: 131 GDTGNAVWDEMLGRFAPISYKMDGVPIPAGSSYLAAIPEKKRLQEMIALIAGRMPGPSAL 190
Query: 157 RPGGVHQDIPPELVEDIGCWCDSFPSAL 184
PGG + + + +
Sbjct: 191 YPGGYTYPATVADITKLSTYYLQIMDFI 218
Score = 85.8 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/179 (13%), Positives = 48/179 (26%), Gaps = 39/179 (21%)
Query: 254 DCYDRYLVRMMEMRESVKIIRQC---------VNRLLGKNKVGPVSASDPKIVPPKRADM 304
+D+ E + R + L +N P + +++ +
Sbjct: 396 YSWDKAPRYDGIAGEVGPLARMLNIKEPLVTGLALALAENGYSP-ANVYTRMLARIQETA 454
Query: 305 KRSMESLIHHFKLYTEGYHV---------PVGEVYAAVEAPKGEFGVYLISDGGNKPYRC 355
+ E L Y G + + EAP+G G ++ ++G K
Sbjct: 455 ILAYELLNWVTVDYEPGGKISVPLDFNAAKDSQGMGLWEAPRGALGHWISTNGSGKVANY 514
Query: 356 KIRAPGYAHLQ---------AMEFLCKGHQLADV-------SAIL----GSLDIVFGEV 394
+ PG + +E G ++ V + S D
Sbjct: 515 QCIVPGSWLMSPRDSNGIPGPLEQSLIGSKINPVGEVDYTNPVGIFHMGRSYDPCISCA 573
>gi|333001183|gb|EGK20751.1| uptake hydrogenase large subunit domain protein [Shigella flexneri
VA-6]
Length = 124
Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 13/93 (13%), Positives = 24/93 (25%), Gaps = 16/93 (17%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQ 366
+ + EAP+G G + K + P + +
Sbjct: 15 EKWEPATWPTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVPTTWNASPRDPKGQIG 73
Query: 367 AMEFLCKGHQLA------DVSAILGSLDIVFGE 393
A E ++A ++ L S D
Sbjct: 74 AYEAALMNTKMAIPEQPLEILRTLHSFDPCLAC 106
>gi|331662387|ref|ZP_08363310.1| hydrogenase-1 large chain (NiFe hydrogenase) (Membrane-bound
hydrogenase 1 large subunit) (HYD1) [Escherichia coli
TA143]
gi|331060809|gb|EGI32773.1| hydrogenase-1 large chain (NiFe hydrogenase) (Membrane-bound
hydrogenase 1 large subunit) (HYD1) [Escherichia coli
TA143]
Length = 430
Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/234 (11%), Positives = 60/234 (25%), Gaps = 33/234 (14%)
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFS-GVMIRGSGAAWDLRKSQPYECYSELDFD--- 246
+ ++ N +G + ++ G + L + + Y +
Sbjct: 181 FVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNA 240
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
+ +G Y ESV + + +L + + + A K
Sbjct: 241 MEVGPLARTLIAYHKGDAATVESVDRMMSAL-KLPLSGIQSTLGRILCRAHEAQWAAGKL 299
Query: 307 S--MESLIHHFK----------LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYR 354
+ L+ + K + EAP+G G + K
Sbjct: 300 QYFFDKLMTNLKNGNLATASTEKWEPTTWPTECRGVGFTEAPRGALGHWAAIR-DGKIDL 358
Query: 355 CKIRAPGYAH---------LQAMEFLCKGHQLA------DVSAILGSLDIVFGE 393
+ P + + A E ++A ++ L S D
Sbjct: 359 YQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLAC 412
>gi|257459573|ref|ZP_05624682.1| quinone-reactive Ni/Fe-hydrogenase large chain [Campylobacter
gracilis RM3268]
gi|257442998|gb|EEV18132.1| quinone-reactive Ni/Fe-hydrogenase large chain [Campylobacter
gracilis RM3268]
Length = 573
Score = 91.9 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 44/380 (11%), Positives = 88/380 (23%), Gaps = 100/380 (26%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H + ++ AL+ L + + H GGV +
Sbjct: 176 HPTYKLSPEQNLIALSHYLECLRIQRTAAQMMAIFGAKQPHPQSLTVGGVTCVMDILSPA 235
Query: 172 DIGCWCDSFPSALN-----DISDLLT-----GNRIFKQRNVNIGTVKLED------AWGW 215
+G + F + DL+ GN ++ + +
Sbjct: 236 RLGEYMSKFKEVADFVNRAYYPDLVMVAKAYGNEPSVLNDIGVANLWTHQEFQLSKNEWL 295
Query: 216 GFSGVMIRGSG----------------AAWDLRKS--QPYECYSELDF------------ 245
SG+++ G AW + PY+ E ++
Sbjct: 296 FQSGMIMNGDISKVLELDENKITEEATHAWYKNDAALHPYDGEQEPNYTGLQDGQSIDAH 355
Query: 246 ------DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPP 299
+ + + + + + + VN +V V K
Sbjct: 356 GKEAHTKVLDTQGKYTWIKAPRYDGKPLQVGPLANIVVNYAKKNERVVKVVDQFLKDAGL 415
Query: 300 KRADM---------------------KRSMESLIHHFK---------LYTEGYHVPVGEV 329
+ ++E+LI + K + G
Sbjct: 416 PLEAVFSTLGRTACRMIEAKVVADNGLIALENLIANIKSGDTQTCAKYVIDNSKEYKGRY 475
Query: 330 YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLAD- 379
V P+G + + P + + A E G +LAD
Sbjct: 476 IGHV--PRGALSHWCRI-EKGVIKNWQAVVPSTWNATPKDKDGAMGAYESCLIGLKLADL 532
Query: 380 -----VSAILGSLDIVFGEV 394
+ + S D
Sbjct: 533 SKPLEIIRRIHSFDPCIACA 552
Score = 84.2 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 42/105 (40%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D E V R L RG E +++ + A + R+ V + A
Sbjct: 13 IEGHLRIEVVVDDENVVREAYSSSTLWRGLETIVKNRDPRDAGFFMQRICGVCTFSHYKA 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
+AVE LGI P+ L R L + + H ++
Sbjct: 73 GIVAVENALGITPPLNALLTRTLMANALFLHDHPVHFYQLHGLDF 117
>gi|302824501|ref|XP_002993893.1| hypothetical protein SELMODRAFT_39915 [Selaginella moellendorffii]
gi|300138260|gb|EFJ05034.1| hypothetical protein SELMODRAFT_39915 [Selaginella moellendorffii]
Length = 85
Score = 91.9 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 33/81 (40%), Positives = 44/81 (54%)
Query: 31 DGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGI 90
DGE V +P G LHRG EK+ E +T +Q PY R DY+A M E A E+ + I
Sbjct: 5 DGEDVIDREPVSGYLHRGMEKIAENRTIVQYPPYVTRWDYLATMPTEAVTVNAPERSIDI 64
Query: 91 EIPIRGQLIRVLYSEIGRILS 111
+ P R R++ E+ RI S
Sbjct: 65 QAPKRASHTRIIMPELSRIAS 85
>gi|320175167|gb|EFW50277.1| Uptake hydrogenase large subunit [Shigella dysenteriae CDC 74-1112]
Length = 114
Score = 91.9 bits (227), Expect = 2e-16, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 37/84 (44%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + ++ + V G + RG E +++ + A + +R+ V A
Sbjct: 27 IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86
Query: 80 YALAVEKLLGIEIPIRGQLIRVLY 103
A+E +GI++P +IR +
Sbjct: 87 SVYAIEDAIGIKVPDNANIIRNIM 110
>gi|320175168|gb|EFW50278.1| Uptake hydrogenase large subunit [Shigella dysenteriae CDC 74-1112]
Length = 477
Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 13/93 (13%), Positives = 24/93 (25%), Gaps = 16/93 (17%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQ 366
+ + EAP+G G + K + P + +
Sbjct: 368 EKWEPATWPTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVPTTWNASPRDPKGQIG 426
Query: 367 AMEFLCKGHQLA------DVSAILGSLDIVFGE 393
A E ++A ++ L S D
Sbjct: 427 AYEAALMNTKMAIPEQPLEILRTLHSFDPCLAC 459
>gi|561860|gb|AAA99487.1| hydrogen uptake hydrogenase large subunit [Rhodobacter sphaeroides]
Length = 113
Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 35/85 (41%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G +R + +D + + R G + RG E +++ + A + +R+ V
Sbjct: 25 IEGHMRCEVNVDDQGIIRNAVSTGTMWRGLEVILKGRDPRDAWAFTERICGVCTGTHALT 84
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYS 104
AVE LGI IP IR +
Sbjct: 85 SVRAVEDALGISIPDNANSIRNMMQ 109
>gi|320531015|ref|ZP_08032047.1| nickel-dependent hydrogenase [Selenomonas artemidis F0399]
gi|320136764|gb|EFW28714.1| nickel-dependent hydrogenase [Selenomonas artemidis F0399]
Length = 637
Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 3/104 (2%)
Query: 20 AHGVLRLILELDG--EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQE 77
G LR+ +++D V+ G RG E ++ + A Y R+ V +
Sbjct: 12 IEGHLRVEIQVDEATGKVQDA-ISSGTAWRGLELVMHDRDPRDAWAYIQRICGVCTSSHA 70
Query: 78 HAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE GI IP IR + + H+++
Sbjct: 71 LGCLRAVEDAFGITIPKNAHYIRNIIAASLGEHDHIVHFYHLHA 114
Score = 88.5 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 14/114 (12%), Positives = 32/114 (28%), Gaps = 16/114 (14%)
Query: 295 KIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYR 354
K K +S ++ + + + + + EAP+G +++ K
Sbjct: 498 KYFFDKLVANIKSGDTTVVNNEKWEPSSWPKEAKGVGFYEAPRGGLSHWVVIK-DGKVAN 556
Query: 355 CKIRAPGYAHL---------QAMEFLCKGH--QLAD----VSAILGSLDIVFGE 393
+ P + A E ++ D + + S D
Sbjct: 557 YQAVVPTTWNACPRDDAEGHGAFEASMMDTVVKIPDKPLEIVKAVRSFDPCMAC 610
>gi|157779394|gb|ABV71238.1| soluble [NiFe] hydrogenase large alpha subunit [Thermococcus
litoralis DSM 5473]
Length = 280
Score = 91.2 bits (225), Expect = 3e-16, Method: Composition-based stats.
Identities = 35/246 (14%), Positives = 68/246 (27%), Gaps = 12/246 (4%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G + ++ V+ V I R E L + + R+ + ++ A
Sbjct: 12 VEGNGGAEIIIENGEVKDVKVKIFEGPRFFELLTLGRHYWDVPDLEARICAICYLSHSVA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV------------GALT 127
L +E+ G+E+P L+R L I SH L++
Sbjct: 72 SVLGIERAFGVEVPEEIMLLRELGLLGELIESHALHLYLLVAPDLFGYADAIRMASKHGE 131
Query: 128 PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
G + E G +H +PGG + E +E + ++
Sbjct: 132 IVKEGLTIKAFGNYIREVIGGREIHGINVKPGGFGRYPTIEELERMEMQSEALLKLARRA 191
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+ + + V + K+ PY + +
Sbjct: 192 VGIFANQEYLGAKAEHYVAVNGYLYGDELIADDGEHFDYFKCIEEKTLPYSFAKQSRYKG 251
Query: 248 PIGKHG 253
+ G
Sbjct: 252 EVFMVG 257
>gi|313897053|ref|ZP_07830600.1| membrane-bound hydrogenase 1 large subunit [Selenomonas sp. oral
taxon 137 str. F0430]
gi|312974500|gb|EFR39968.1| membrane-bound hydrogenase 1 large subunit [Selenomonas sp. oral
taxon 137 str. F0430]
Length = 637
Score = 91.2 bits (225), Expect = 3e-16, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 3/104 (2%)
Query: 20 AHGVLRLILELDG--EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQE 77
G LR+ +++D V+ G RG E ++ + A Y R+ V +
Sbjct: 12 IEGHLRVEIQVDEATGKVQDA-ISSGTAWRGLELVMHDRDPRDAWAYIQRICGVCTSSHA 70
Query: 78 HAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
AVE GI IP IR + + H+++
Sbjct: 71 LGCLRAVEDAFGITIPKNAHYIRNIIAACLGHQDHIIHFYHLHA 114
Score = 88.5 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 14/114 (12%), Positives = 32/114 (28%), Gaps = 16/114 (14%)
Query: 295 KIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYR 354
K K +S ++ + + + + + EAP+G +++ K
Sbjct: 498 KYFFDKLVANIKSGDTTVVNNEKWEPSSWPKEAKGVGFYEAPRGGLSHWVVIK-DGKVAN 556
Query: 355 CKIRAPGYAHL---------QAMEFLCKGH--QLAD----VSAILGSLDIVFGE 393
+ P + A E ++ D + + S D
Sbjct: 557 YQAVVPTTWNACPRDDAEGHGAFEASMMDTVVKIPDKPLEIVKAVRSFDPCMAC 610
>gi|304390393|ref|ZP_07372346.1| NAD-reducing hydrogenase [Mobiluncus curtisii subsp. curtisii ATCC
35241]
gi|304326149|gb|EFL93394.1| NAD-reducing hydrogenase [Mobiluncus curtisii subsp. curtisii ATCC
35241]
Length = 417
Score = 91.2 bits (225), Expect = 3e-16, Method: Composition-based stats.
Identities = 55/403 (13%), Positives = 102/403 (25%), Gaps = 53/403 (13%)
Query: 30 LDGEIVE--------RVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYA 81
++G IV + L R + ++ KT L+A+ + L + P+ A
Sbjct: 12 MEGRIVVTHDSSGHPHARFDLQGLPR-VDGMLVGKTALEALKMTEHLCGICPVAHHLAGT 70
Query: 82 LAVEKLLGIEI-PIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLM 140
A++ L G+ QL R L + +H L Q D G +
Sbjct: 71 RALDALSGLPPLTPAAQLTRRLLHYGSIVEAHSLRFLMQDRDAGV--------ALKRISK 122
Query: 141 VFYERASGSRMHAAYFRPGGVH-QDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQ 199
A A PGGV P L + + +A L +
Sbjct: 123 KMLVAAGSPGHFPATAVPGGVSEWPATPTLCDLSADLATAQDAAAALCDAALASSPEAAG 182
Query: 200 RNVNIGTVKL--EDAWGWGFSGVMIRG----------SGAAWDLRKSQPYECYSELDFDI 247
G +D G +R + W+ R ++ +
Sbjct: 183 AGDFTGADVALIDDNGAPDVFGTRVRVARNTSAVDEFEFSQWNDRITEEIPGSPAPRPYL 242
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK-- 305
+ + R ++ R + + + I +
Sbjct: 243 RVEGPENGRYRVGPVAQLSVGTLSTPRAATAQARWLAGGRGAAGARAIITLHVLERTEAL 302
Query: 306 -----RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ +E + G V+ P+G + +I P
Sbjct: 303 TQQLTQLVEGADRGELVDPATVRFTAGSGTGLVDGPRGILAHTYALGADGTIAQARILTP 362
Query: 361 GYAH----------LQAMEFLCKGHQLADV-SAILGSLDIVFG 392
+ A++ Q AD + D
Sbjct: 363 TAQNEPWLAQLLTQASALDQA----QQADAWEQSIREADPCLP 401
>gi|315657601|ref|ZP_07910483.1| reducing hydrogenase alpha subunit [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|315492073|gb|EFU81682.1| reducing hydrogenase alpha subunit [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length = 417
Score = 91.2 bits (225), Expect = 3e-16, Method: Composition-based stats.
Identities = 56/403 (13%), Positives = 103/403 (25%), Gaps = 53/403 (13%)
Query: 30 LDGEIVE--------RVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYA 81
++G IV + L R + ++ KT L+A+ + L + P+ A
Sbjct: 12 MEGRIVVTHDSSGHPHARFDLQGLPR-VDGMLVGKTALEALKMTEHLCGICPVAHHLAGT 70
Query: 82 LAVEKLLGIEI-PIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLM 140
A++ L G+ QLIR L + +H L Q D G +
Sbjct: 71 RALDALSGLTPLTSAAQLIRRLLHYGSIVEAHSLRFLMQDRDAGV--------ALKRISK 122
Query: 141 VFYERASGSRMHAAYFRPGGVH-QDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQ 199
A A PGGV P L + + +A L +
Sbjct: 123 KMLVAAGSPGHFPATAVPGGVSMWPATPTLCDLSADLATTRDAAAALCDAALASSPEAAG 182
Query: 200 RNVNIGTVKL--EDAWGWGFSGVMIRG----------SGAAWDLRKSQPYECYSELDFDI 247
G +D G +R + W+ R ++ +
Sbjct: 183 AGDFTGADVALIDDNGAPDVFGTRVRVARNTSAVDEFEFSQWNDRITEEIPGSPAPRPYL 242
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK-- 305
+ + R ++ R + + + I +
Sbjct: 243 RVEGPENGRYRVGPVAQLSVGTLSTPRAATAQARWLAGGRGAAGARAIITLHVLERTEAL 302
Query: 306 -----RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ +E + G V+ P+G + +I P
Sbjct: 303 TQQLTQLVEGADRGELVDPATVRFTAGSGTGLVDGPRGILAHTYALGADGTIAQARILTP 362
Query: 361 GYAH----------LQAMEFLCKGHQLADV-SAILGSLDIVFG 392
+ A++ Q AD + D
Sbjct: 363 TAQNEPWLAQLLTQASALDQA----QQADAWEQSIREADPCLP 401
>gi|290790881|gb|ADD63137.1| NADH-plastoquinone oxidoreductase subunit 7 [Microlaena
stipoides]
Length = 74
Score = 91.2 bits (225), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/51 (50%), Positives = 34/51 (66%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIE 54
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ +
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIGK 56
>gi|2182077|emb|CAA71010.1| NADH:ubiquinone oxidoreductase complex I subunit [Rhodobacter
capsulatus]
Length = 58
Score = 90.8 bits (224), Expect = 4e-16, Method: Composition-based stats.
Identities = 43/58 (74%), Positives = 54/58 (93%)
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFGVYL++DG NKPYR KIRAPGYAHLQ+++ + KGHQLADVSAI+G++D+VFGE+DR
Sbjct: 1 EFGVYLVADGTNKPYRAKIRAPGYAHLQSIDAVAKGHQLADVSAIIGTMDVVFGEIDR 58
>gi|147920638|ref|YP_685563.1| F420-nonreducing hydrogenase (membrane-bound), large subunit
[uncultured methanogenic archaeon RC-I]
gi|110620959|emb|CAJ36237.1| F420-nonreducing hydrogenase (membrane-bound), large subunit
[uncultured methanogenic archaeon RC-I]
Length = 574
Score = 90.8 bits (224), Expect = 4e-16, Method: Composition-based stats.
Identities = 30/222 (13%), Positives = 58/222 (26%), Gaps = 60/222 (27%)
Query: 201 NVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYL 260
+ +G + R + R+ + F P+ G Y+R
Sbjct: 378 HKYSFVKAPRYGNVPCETGPLARM----INSREPYIMNIMQMMHFSNPVFSSGKSYNRTS 433
Query: 261 VRMMEM--RESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHH--FK 316
V + + I Q + R ++ L H +
Sbjct: 434 VYTRVLSRMQECLITAQLLGR---------------------------WIDDLEVHSDPR 466
Query: 317 LYTEGYHVPVGE-VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQ 366
Y GE +EAP+G G ++ D + +I +P +
Sbjct: 467 KYCVPVTPGRGEAGACMIEAPRGALGHWMRLDEDGRIAGYQIISPTTWNASPRDAETKFG 526
Query: 367 AMEFLCKG--------------HQLADVSAILGSLDIVFGEV 394
+E G + ++ + I+ S D
Sbjct: 527 PIELSLIGAKTTPRGNIPGSEVNPIS-LYHIIRSFDPCVSCA 567
Score = 89.6 bits (221), Expect = 7e-16, Method: Composition-based stats.
Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 3/130 (2%)
Query: 28 LELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKL 87
+E+ V G +RG E+++ + + AV + R+ + A A AVE L
Sbjct: 1 MEMKDGSVVDARCS-GTTYRGFEQMMIGRDPMDAVYFTQRVCGMCSTPHATAAAGAVESL 59
Query: 88 LGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYER 145
G IP L+R + + + + SH+ N+ + A +
Sbjct: 60 AGATGQIPKDALLVRNILNGLAWLRSHVENLYLSFLPDLADPIYGDLLRYSDVGTALTGE 119
Query: 146 ASGSRMHAAY 155
+G Y
Sbjct: 120 LAGRFNVPGY 129
>gi|119509256|ref|ZP_01628406.1| Nickel-dependent hydrogenase, large subunit [Nodularia spumigena
CCY9414]
gi|119466098|gb|EAW46985.1| Nickel-dependent hydrogenase, large subunit [Nodularia spumigena
CCY9414]
Length = 362
Score = 90.0 bits (222), Expect = 6e-16, Method: Composition-based stats.
Identities = 29/177 (16%), Positives = 50/177 (28%), Gaps = 22/177 (12%)
Query: 237 YECYSELDFDIPIGKHGDCYDRYLVRMMEMRESV-KIIRQCVNRLLGKNKVGPVSASDPK 295
Y S + R LV ES ++ +
Sbjct: 171 YSWSSAVLHKDFGRLEAGPLARQLVAGGNHGESWQHHDGFILDAFKSMGGASVHLRQLAR 230
Query: 296 IVPPKRADMKRSMESLIHHFKLYTEGYHVP---VGEVYAAVEAPKGEFGVYLISDGGNKP 352
+ + + R E + FKL Y P G+ + A EA +G ++ G K
Sbjct: 231 VHELVK--LYRQAEHCLREFKLNDPWYIKPTERDGKGWGATEAARGALSHWVEV-EGGKI 287
Query: 353 YRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394
++ APG ++ +E G + D V + + D
Sbjct: 288 KNYQVVAPGTWNIGPRDGEGKRGPIEEALIGTPIYDSSDPVEVGHVARAFDSCLVCT 344
>gi|213023564|ref|ZP_03338011.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Typhi str. 404ty]
Length = 164
Score = 90.0 bits (222), Expect = 6e-16, Method: Composition-based stats.
Identities = 15/93 (16%), Positives = 25/93 (26%), Gaps = 16/93 (17%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQ 366
+ + EAP+G G + K + P + +
Sbjct: 55 EKWEPASWPQHCRGIGFTEAPRGALGHWASIR-DQKIELYQCVVPTTWNASPRDPKKQIG 113
Query: 367 AMEFLCKGHQLA------DVSAILGSLDIVFGE 393
A E G Q+A ++ L S D
Sbjct: 114 AYEAALMGTQMAIPDQPLEILRTLHSFDPCLAC 146
>gi|289064367|gb|ADC80557.1| bidirectional NAD(P)-linked NiFe hydrogenase [uncultured
Hahellaceae bacterium]
Length = 324
Score = 90.0 bits (222), Expect = 7e-16, Method: Composition-based stats.
Identities = 40/327 (12%), Positives = 86/327 (26%), Gaps = 54/327 (16%)
Query: 68 LDYVAPMNQEHAYALAVEKLLGIE-IPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV--- 123
+ + P++ A A A+ +++G E + + +R L SH+L+
Sbjct: 1 ICGICPVSHHLAAAKAMXRIVGGENLTPTAEKMRRLMHYGQTFQSHVLHFFHLVSPDLLF 60
Query: 124 ----------------GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP 167
+ G R+ + +G ++H PGGV++++
Sbjct: 61 GFDADPMIRNIIGVAKKYPDLAVQGVMMRKYGQEVIKATAGKKIHGTGAIPGGVNKNLSI 120
Query: 168 ELVEDIGCWCDSFPSALNDISDLLTG-NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSG 226
E + + D + + + + G+ G M G
Sbjct: 121 EERDVLLKDLDQMITWAHSALKIAKDYTVEHLDDVKDFGSFDSNHMGLVREDGAMDLYHG 180
Query: 227 -----------------------------AAWDLRKSQPYECYSELDFDIPIGKHGDCYD 257
W K + + +G
Sbjct: 181 NLRALDKDGNVIFDQVNPLDYADHIAEEVRDWSYMKFPFIKKIGPENGWYRVGPLSRVNI 240
Query: 258 RYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESL-IHHFK 316
+ E ++ K + + N + ++ + +
Sbjct: 241 CDFIDTPEAEKARKEFK-ALTNDKPNNITMAYHWARMIETLHSIEKIQELLNDPXLQGTX 299
Query: 317 LYTEGYHVPVGEVYAAVEAPKGEFGVY 343
L T+G E VEAP+G +
Sbjct: 300 LVTKGKRRD--ETVVIVEAPRGTLFHH 324
>gi|196018045|ref|XP_002118720.1| predicted protein [Trichoplax adhaerens]
gi|190578388|gb|EDV18795.1| predicted protein [Trichoplax adhaerens]
Length = 213
Score = 89.6 bits (221), Expect = 7e-16, Method: Composition-based stats.
Identities = 37/47 (78%), Positives = 43/47 (91%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRG 48
DKK ++ +INFGPQHPAAHGVLRLILE+DGE++ER DPHIGLLHRG
Sbjct: 5 DKKNIKNISINFGPQHPAAHGVLRLILEMDGEVIERADPHIGLLHRG 51
>gi|298345903|ref|YP_003718590.1| reducing hydrogenase subunit alpha [Mobiluncus curtisii ATCC 43063]
gi|298235964|gb|ADI67096.1| reducing hydrogenase alpha subunit [Mobiluncus curtisii ATCC 43063]
Length = 417
Score = 89.6 bits (221), Expect = 7e-16, Method: Composition-based stats.
Identities = 51/372 (13%), Positives = 96/372 (25%), Gaps = 38/372 (10%)
Query: 30 LDGEIVE--------RVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYA 81
++G IV + L R + ++ KT L+A+ + L + P+ A
Sbjct: 12 MEGRIVVTHDSSGHPHARFDLQGLPR-VDGMLVGKTALEALKMTEHLCGICPVAHHLAGT 70
Query: 82 LAVEKLLGIEI-PIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLM 140
A++ L G+ QL R L + +H L Q D G +
Sbjct: 71 RALDALSGLPPLTPAAQLTRRLLHYGSIVEAHSLRFLMQDRDAGV--------ALKRISK 122
Query: 141 VFYERASGSRMHAAYFRPGGVH-QDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQ 199
A A PGGV P L + + +A L +
Sbjct: 123 KMLVAAGSPGHFPATAVPGGVSVWPAAPTLCDLSADLATARDAAAALCDAALASSPEATG 182
Query: 200 RNVNIGTVKL--EDAWGWGFSGVMIRG----------SGAAWDLRKSQPYECYSELDFDI 247
G +D G +R + W+ R ++ +
Sbjct: 183 AGDFTGADVALIDDNGAPDVFGTRVRVARNTSAVDEFEFSQWNDRITEEIPGSPAPRPYL 242
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK-- 305
+ + R ++ R + + + I +
Sbjct: 243 RVEGPENGRYRVGPVAQLSVGTLSTPRAATAQARWLAGGRGAAGARAIITLHVLERTEAL 302
Query: 306 -----RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+ +E + G V+ P+G + +I P
Sbjct: 303 TQQLTQLVEGADRGELVDPATVRFTAGSGTGLVDGPRGILAHTYTLGADGTIAQARILTP 362
Query: 361 GYAHLQAMEFLC 372
+ + L
Sbjct: 363 TAQNEPWLAQLL 374
>gi|332088684|gb|EGI93797.1| formate hydrogenlyase subunit 5 domain protein [Shigella
dysenteriae 155-74]
Length = 84
Score = 89.2 bits (220), Expect = 9e-16, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 345 ISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
++ K YR + RA YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 1 MTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 52
>gi|73669352|ref|YP_305367.1| methanophenazine-reducing hydrogenase large subunit [Methanosarcina
barkeri str. Fusaro]
gi|72396514|gb|AAZ70787.1| methanophenazine-reducing hydrogenase, large subunit
[Methanosarcina barkeri str. Fusaro]
Length = 591
Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/208 (12%), Positives = 58/208 (27%), Gaps = 44/208 (21%)
Query: 20 AHGVLRLILEL-DGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G R+ E+ ++ L+ RG E++++ + A R+ V P++
Sbjct: 12 IEGHQRISTEVGADGVITDAQ-SSSLIFRGFERILQHQDPRDAAFLTQRICGVCPLSHGL 70
Query: 79 AYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL------ 130
A++ L G+ +P ++R ++ + SH ++ A
Sbjct: 71 TATNALDDLYGVAEYVPKDALMMRNIFQGLNMAASHATHIYILFGPDLANPAYRNVLTPL 130
Query: 131 ----------------------------------WGFEEREKLMVFYERASGSRMHAAYF 156
E+++L +G +
Sbjct: 131 GDTGTAVWKEMVGRFAPISYKMDGVAVPAGSSYLAAIPEKKRLQEMIALIAGRMPGPSAL 190
Query: 157 RPGGVHQDIPPELVEDIGCWCDSFPSAL 184
PGG + + + +
Sbjct: 191 YPGGYTYPATVADITKLSSYYLQIMDFI 218
Score = 87.7 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/195 (13%), Positives = 48/195 (24%), Gaps = 39/195 (20%)
Query: 239 CYSELDFDIPIGKHG--DCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKI 296
+++ D + G +D+ E + R + + +
Sbjct: 379 PFTDPDKIVFTGGSDSQYSWDKAPRYDGIAGEVGPLARMLNIKEPLVTGLAQALNENSYS 438
Query: 297 VPPKRADMKRSM--------ESLIHHFKLYTEGYHV---------PVGEVYAAVEAPKGE 339
M M E L YT G + + EAP+G
Sbjct: 439 AANVYTRMLARMQETAILAYELLNWVTVDYTPGGKISVPIDLNAAKDNQGMGLWEAPRGA 498
Query: 340 FGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKG---HQLADV----SAI 383
G ++ + K + PG + +E G + + DV
Sbjct: 499 LGHWVSAGSDGKVTNYQCIVPGSWLMSPRDSNGIPGPLEQSLIGSKINPVGDVDYTNPVG 558
Query: 384 L----GSLDIVFGEV 394
+ S D
Sbjct: 559 IFHMGRSYDPCISCA 573
>gi|119509248|ref|ZP_01628398.1| [NiFe] uptake hydrogenase large subunit [Nodularia spumigena
CCY9414]
gi|119466090|gb|EAW46977.1| [NiFe] uptake hydrogenase large subunit [Nodularia spumigena
CCY9414]
Length = 194
Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/179 (15%), Positives = 48/179 (26%), Gaps = 22/179 (12%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L + +++D V H L RG E ++ K + R+ + + +
Sbjct: 14 VEGDLDVRVDIDNGRVVNAWTHA-ELFRGFEIILRGKDPQAGLIVTPRICGICGGSHLTS 72
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG---------ALTPPL 130
+ A++ L G E+P L R L + + S
Sbjct: 73 ASWALDTLWGTEVPRNAILARNLGQIVETMQSIPRYFYGLFAIDLTNKKYRRSRHYEEAC 132
Query: 131 WGFE------------EREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWC 177
F K + Y G H++Y I +
Sbjct: 133 RRFAAYTGKSYEIGVTISAKPVEIYALLGGQWPHSSYMVINYGIAYIVRICQDMCNDSL 191
>gi|282165605|ref|YP_003357990.1| F420-non-reducing hydrogenase large subunit [Methanocella
paludicola SANAE]
gi|282157919|dbj|BAI63007.1| F420-non-reducing hydrogenase large subunit [Methanocella
paludicola SANAE]
Length = 579
Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 33/271 (12%), Positives = 63/271 (23%), Gaps = 41/271 (15%)
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI-SDLLTGNRIFKQRNVNIGT 206
G+ A F PGG+ D + ++ D + L+ +
Sbjct: 316 GAFEMPAGFTPGGMQNIYLAADRVDPNLIVEHVAASFYDYSEERLSEAP---LDGETVPA 372
Query: 207 VKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEM 266
+ G I+ + P + I Y R +
Sbjct: 373 GRASSIELDGARYSFIKAPRYGRVPCEVGPLARQINSRESLIIDAMRRLYSRNMSVTNYP 432
Query: 267 RESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV 326
SV + ++ + + K P
Sbjct: 433 MASVYTRTMA-------------RMQETLLISRMLHEWLDDLHVSDERQKYCVPVSVKPN 479
Query: 327 GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKG--- 374
+EAP+G G +L K ++ AP + ME G
Sbjct: 480 RTGSGLIEAPRGALGHWLRIGKDQKISNYQVVAPTTWNASPRCSEQKSGPMELALLGCST 539
Query: 375 -----------HQLADVSAILGSLDIVFGEV 394
+ ++ + ++ S D
Sbjct: 540 TPSGYLPGSESNPVS-IYHVIRSFDPCAACA 569
Score = 82.7 bits (203), Expect = 1e-13, Method: Composition-based stats.
Identities = 22/112 (19%), Positives = 46/112 (41%), Gaps = 3/112 (2%)
Query: 24 LRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALA 83
LR+ EL + G+++RG E+++ ++ A + R+ + + A A
Sbjct: 15 LRVTAELTDGAITSAS-SSGMIYRGLEQMLAGRSPEDAPYFTQRICGMCSASHATASVNA 73
Query: 84 VEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGF 133
+E G IP L+R + + +G + +H+ ++ M A
Sbjct: 74 IESAAGAAGLIPRDALLVRNILNGLGWLKNHVEHLYMAFMPDLADPVYGDAL 125
>gi|11466843|ref|NP_039440.1| hypothetical protein OrsajCp084 [Oryza sativa Japonica Group]
gi|50234034|ref|YP_052811.1| NADH dehydrogenase subunit 7 [Oryza nivara]
gi|109156629|ref|YP_654248.1| NADH dehydrogenase subunit 7 [Oryza sativa Indica Group]
gi|12046|emb|CAA33949.1| unnamed protein product [Oryza sativa Japonica Group]
gi|42795521|gb|AAS46088.1| NADH dehydrogenase subunit 7 [Oryza sativa Indica Group]
gi|42795587|gb|AAS46153.1| NADH dehydrogenase subunit 7 [Oryza sativa Japonica Group]
gi|42795651|gb|AAS46216.1| NADH dehydrogenase subunit 7 [Oryza sativa Japonica Group]
gi|49615058|dbj|BAD26841.1| NADH dehydrogenase subunit 7 [Oryza nivara]
gi|290790608|gb|ADD62868.1| NADH-plastoquinone oxidoreductase subunit 7 [Oryza sativa
Japonica Group]
gi|290790677|gb|ADD62936.1| NADH-plastoquinone oxidoreductase subunit 7 [Oryza meridionalis]
gi|226666|prf||1603356CT ORF 393 N term
Length = 56
Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/51 (50%), Positives = 34/51 (66%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIE 54
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+ +
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIGK 56
>gi|146303700|ref|YP_001191016.1| coenzyme F420-reducing hydrogenase alpha subunit-like protein
[Metallosphaera sedula DSM 5348]
gi|145701950|gb|ABP95092.1| Coenzyme F420-reducing hydrogenase alpha subunit-like protein
[Metallosphaera sedula DSM 5348]
Length = 379
Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 56/383 (14%), Positives = 108/383 (28%), Gaps = 54/383 (14%)
Query: 26 LILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVE 85
L +++ V G RG E++ K + R+ + AY AV
Sbjct: 12 LKVKISDGKVVYAK-SSGNKLRGYERMFIGKDPRELPDIIPRVLSTCAQSHTFAYIKAVG 70
Query: 86 KLLGIEIPIRGQLIRVLYSEIGRILSHLLN--VTTQAMDVGALTPPLWGFEERE------ 137
LI L + I S++ + G G + R+
Sbjct: 71 N-------NNLDLIGNLMVSLEIIESNIKHPYAYWLPYLGGVEYEFPGGKKFRKVSHASR 123
Query: 138 KLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIF 197
K+ E+ G Y + G EL + I G +
Sbjct: 124 KIRAIMEKIGGKWPSVDYVKKGTKLSFTREELKDVISFLESDMLGMS---LQDFLGIKEL 180
Query: 198 KQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYD 257
++ +I + E +G + D + YD
Sbjct: 181 EELRGDIRYLNAEYWR-----------AGLGRYASAWAQLDVSKIDDQGDRV-----LYD 224
Query: 258 RYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKL 317
LV + + +++ V P + R + + + ++
Sbjct: 225 GTLVEVGPLAQALTFDDMIVKLHRDMGPS-------PLLRELARVRVAAKLILGLQDLEI 277
Query: 318 YTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---AMEFLCKG 374
+EG H+ G+ +E+ +G + K ++ P + A+E G
Sbjct: 278 ESEGLHIR-GDGIGYLESIRGVLVHQVKVKD--KVVEYRVIQPTTFNASPGGALENAVLG 334
Query: 375 HQLAD------VSAILGSLDIVF 391
+ + +S + SLD F
Sbjct: 335 IPVRNYRNPWEISLAVSSLDSCF 357
>gi|323477007|gb|ADX82245.1| [NiFe] hydrogenase large subunit, HyaB [Sulfolobus islandicus
HVE10/4]
Length = 604
Score = 88.5 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/245 (11%), Positives = 56/245 (22%), Gaps = 42/245 (17%)
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFS----GVMIRGSGAAWDLRKSQPYECYSELDFD 246
+ +G E + G + WD E Y
Sbjct: 340 YEEWKERILETDPLGNKLSEYHPWNKITIPKPGPLNWREKYTWDTAPRWRREVYETGGGP 399
Query: 247 IPIGKH---------------GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSA 291
+ G R V +++ + + + +
Sbjct: 400 LARHWVTALAGKLPQNPYIKAGGGKLRITVPKGTSLPDIELEWKVPKVINALERNRARAY 459
Query: 292 SDPKIVPPKRADMKRSMESLIHHF-KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGN 350
++ ++ +++ L K++T + G EA +G ++I
Sbjct: 460 HVAYVIGVAMTNLLKALSYLREGKSKVWTRFEWLNEGVGVGFYEAGRGILTHHIIIR-NK 518
Query: 351 KPYRCKIRAPGYAHLQ---------AMEFLCKGHQLA------------DVSAILGSLDI 389
K Y +I P + E + DV + S D
Sbjct: 519 KIYNYQIITPSTWNASPRDPSDQPGPYELCAMSTPVLEEFKTADEFTGIDVLRSIRSFDP 578
Query: 390 VFGEV 394
Sbjct: 579 CMPCT 583
Score = 83.1 bits (204), Expect = 8e-14, Method: Composition-based stats.
Identities = 34/257 (13%), Positives = 64/257 (24%), Gaps = 48/257 (18%)
Query: 24 LRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALA 83
+ ++L V L RG E +++ + + A R V +A
Sbjct: 44 FYVKVDLSNRKVLDARSTAA-LFRGYEVILKGRDPIDAPMISSRACGVCGGVHSVTSVMA 102
Query: 84 VEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT---------------- 127
+E G+ P +R + + H L++ A + +
Sbjct: 103 IEMAAGVTPPPLAIAMRNMAGAAEMMYDHPLHMFLLAGPDYSASIVSKTEPSLFQAAKNA 162
Query: 128 --------------------------PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGV 161
L + + G H + GGV
Sbjct: 163 LAEHRDVHGFTKIVDIMEALNPLKGQLYLEAIQITRIAREMFSLMLGRYPHPSTLVVGGV 222
Query: 162 HQDIPPELVEDIGCWCDSFPSALNDISDLLTG--NRIFKQRNVN--IGTVKLEDAWGWGF 217
+ P L D ++ + N +K+R +G + G
Sbjct: 223 STTVLPNLFTDYLVRMTKLFDWAKRMALIWEDIINFWYKERPEYESVGKNPTGNIISGGI 282
Query: 218 SGVMIRG-SGAAWDLRK 233
SG + K
Sbjct: 283 YDDSELAESGDLYKYEK 299
>gi|290790746|gb|ADD63004.1| NADH-plastoquinone oxidoreductase subunit 7 [Oryza australiensis]
Length = 56
Score = 88.1 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/49 (53%), Positives = 33/49 (67%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKL 52
+ +N GPQHP+ HGVLRLI+ LDGE V +P +G LHRG EK+
Sbjct: 6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKI 54
>gi|108802983|ref|YP_642920.1| Ni Fe-hydrogenase III large subunit-like protein [Rubrobacter
xylanophilus DSM 9941]
gi|108764226|gb|ABG03108.1| Ni Fe-hydrogenase III large subunit-like protein [Rubrobacter
xylanophilus DSM 9941]
Length = 540
Score = 88.1 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 80/393 (20%), Positives = 115/393 (29%), Gaps = 91/393 (23%)
Query: 12 NFGPQHPAAHGVLRLILELDGEIVERVDPH-IGLLHRGTEKLIETKTFLQAV--PYFDRL 68
FGP P G L L L LDG+ V P G G L +RL
Sbjct: 231 PFGPLFPGLPGGLFLKLTLDGDTVAEASPSACGWASPG---------PLTGPADALAERL 281
Query: 69 DYV---APMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
+ +P + AVE G R R E R SHL ++ A +G
Sbjct: 282 AGIDPLSPASYRVLALRAVEDAAGAGADERTVRARAGALERERAASHLGWLSGFAYLIGH 341
Query: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
E + + R A +E
Sbjct: 342 RWLARRAAELQ---------LAVLRAEPAGMPGLRAAARSLARRIERT------------ 380
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ +R IG + G G SG + R +G D R + Y L F
Sbjct: 381 ---------PLLARRLEGIGALPG----GTGASGPVARAAGVRTDARCGE--GAYRALGF 425
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK 305
+ + + GD R VR+ E+ ES+ + G + P+
Sbjct: 426 EPVVREGGDALARLRVRLAEIEESLGLAAAA----------GSLDIPAPRAATGASGAGA 475
Query: 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG--EFGVYLISDGGNKPYRCKIRAPGYA 363
VE P+G V L SDG ++ P
Sbjct: 476 A-------------------------TVETPRGTATLRVAL-SDGE--VVSAELEGPSAR 507
Query: 364 HLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
HL + + + +LAD + SLD+ E R
Sbjct: 508 HLALVGRVAEQRELADALVGVASLDLSPWETAR 540
>gi|157164490|ref|YP_001466898.1| aminodeoxychorismate lyase [Campylobacter concisus 13826]
gi|112800276|gb|EAT97620.1| quinone-reactive Ni/Fe-hydrogenase large chain (Membrane-bound
hydrogenase large subunit)
(Hydrogen:quinoneoxidoreductase) [Campylobacter concisus
13826]
Length = 572
Score = 88.1 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 48/413 (11%), Positives = 89/413 (21%), Gaps = 96/413 (23%)
Query: 77 EHAYALAVEKLLGI-EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEE 135
+A +KL + E L H T ++ L+ L
Sbjct: 141 STPFATGADKLKEVKERVEAFVKKGNLGPFANAYWGHSTYKFTPEQNLIVLSHYLECLRI 200
Query: 136 REKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN-----DISDL 190
+ H GGV + +G + F D+
Sbjct: 201 QRTAAQMMAIFGAKNPHPQSLTVGGVTCVMDLLDPARMGEYMSKFAEIKEFVDRAYYPDI 260
Query: 191 LTG-----NRIFKQRNVNIGTVKLEDAWGWGF------SGVMIRGS---GAAWDLRKS-- 234
L N +V + + D + G G+++ G D K
Sbjct: 261 LMAAKAYANEPSVLNDVGVSNLFCYDEFLIGKNDHLFKGGIILNGDISKVYDIDENKITE 320
Query: 235 -------------QPYECYSELDFDIPIG------------------KHGDCYDRYLVRM 263
PY+ +E ++ + K + +
Sbjct: 321 EATRSWYKNDKALHPYDGETEANYTGLVDGESIDGEGKLAHSKLFDTKGKYSWIKAPRYD 380
Query: 264 MEMRESVKIIRQCVNRLLGKNKVGPVSASDPK-------------------------IVP 298
+ I +N G +V V +
Sbjct: 381 GMPMQVGPIASIVINYAKGNERVKKVVDEFLAKSGLPLSVVFSTLGRTAARMLEAKVVAE 440
Query: 299 PKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAA--VEAPKGEFGVYLISDGGNKPYRCK 356
+E+L + T+ E AP+G + +
Sbjct: 441 HTMDAFNALIENLKTDQETCTKYVIDNKKEYKGNFQGNAPRGALSHWCRIK-DGVISNWQ 499
Query: 357 IRAPGYAHLQA---------MEFLCKGHQLAD------VSAILGSLDIVFGEV 394
P + E G ++AD + + S D
Sbjct: 500 AVVPSTWNASPKDAKGQMGSYEACLVGLKIADLSKPLEIIRKIHSYDPCIACA 552
Score = 86.5 bits (213), Expect = 6e-15, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 45/104 (43%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ + +D V + L RG E++++ + A + R+ V + A
Sbjct: 14 IEGHLRIEVVVDENNVVKEAYSGSTLWRGLEQIVKNRDPRDAGFFMQRICGVCTYSHYRA 73
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
+AVE LGI+ P+ +L R L + + H+++
Sbjct: 74 GIVAVEDALGIKPPLNAELTRTLMNAALYLHDHIVHFYQLHGMD 117
>gi|321453266|gb|EFX64518.1| hypothetical protein DAPPUDRAFT_266256 [Daphnia pulex]
Length = 72
Score = 88.1 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 37/58 (63%), Positives = 50/58 (86%)
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFGVYL+SDG ++PYRCKI+APG+AH A+E + + H LAD+ AI+G+LD+VFGE+DR
Sbjct: 15 EFGVYLVSDGTSRPYRCKIKAPGFAHPAALEKVGRNHMLADIVAIIGTLDVVFGEIDR 72
>gi|213859612|ref|ZP_03385316.1| hydrogenase 4 membrane subunit [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
Length = 80
Score = 88.1 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 47 RGTEKLIETKT-FLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSE 105
RG EKL ET+ + + DR+ + AY +VE LGIE+P R IR + E
Sbjct: 1 RGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLE 60
Query: 106 IGRILSHLLNVTTQAMDVGA 125
+ R+ SHLLN+ VG
Sbjct: 61 VERLHSHLLNLGLSCHFVGF 80
>gi|323097795|emb|CBJ18458.1| [Ni/Fe] hydrogenase [uncultured bacterium]
Length = 353
Score = 88.1 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 35/89 (39%)
Query: 32 GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIE 91
E V L RG E + + + R+ V + +AVE LGI+
Sbjct: 1 DEGVVENAFVGSTLWRGLEVIAKGRDPRNVPLIMQRICGVCTYSHYLKSTMAVEDALGIK 60
Query: 92 IPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
IP+ +L+R L + + H+++
Sbjct: 61 IPLNAELVRTLMNAALFMHDHVVHFYHLH 89
Score = 39.2 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 15/114 (13%), Positives = 30/114 (26%)
Query: 91 EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSR 150
+ + + L H T ++ AL+ L E + G +
Sbjct: 132 TVAKFAKNPQGLGPFANAYWGHGTYKFTPEQNLIALSHYLKALEMQRLAAQLMAIFGGKQ 191
Query: 151 MHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNI 204
H GGV + +G + F + N ++ +
Sbjct: 192 PHPQSLVVGGVTCVMDILDPSRMGEYLTKFKTMANFVTHAYVADIKMAAEMYAT 245
>gi|163785061|ref|ZP_02179782.1| Putative NADH-ubiquinone oxidoreductase subunit [Hydrogenivirga sp.
128-5-R1-1]
gi|159879674|gb|EDP73457.1| Putative NADH-ubiquinone oxidoreductase subunit [Hydrogenivirga sp.
128-5-R1-1]
Length = 101
Score = 87.3 bits (215), Expect = 4e-15, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 32/65 (49%)
Query: 331 AAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIV 390
E +G+ Y+ +D K +R K+R P + + Q ++F G +AD + SL++
Sbjct: 36 GYAEGQRGDIIHYVQTDDEGKIFRWKVRDPSFHNWQTIQFAVLGDIIADFPLVNKSLNLS 95
Query: 391 FGEVD 395
+ D
Sbjct: 96 YAGND 100
>gi|321455403|gb|EFX66537.1| hypothetical protein DAPPUDRAFT_332103 [Daphnia pulex]
Length = 70
Score = 86.9 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 37/58 (63%), Positives = 50/58 (86%)
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
EFGVYL+SDG ++PYRCKI+APG+AH A+E + + H LAD+ AI+G+LD+VFGE+DR
Sbjct: 13 EFGVYLVSDGTSRPYRCKIKAPGFAHPAALEKVGRNHMLADIVAIIGTLDVVFGEIDR 70
>gi|187736607|ref|YP_001878719.1| nickel-dependent hydrogenase large subunit [Akkermansia muciniphila
ATCC BAA-835]
gi|187426659|gb|ACD05938.1| nickel-dependent hydrogenase large subunit [Akkermansia muciniphila
ATCC BAA-835]
Length = 585
Score = 86.9 bits (214), Expect = 5e-15, Method: Composition-based stats.
Identities = 28/194 (14%), Positives = 55/194 (28%), Gaps = 31/194 (15%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E +++ +RG E + + + +R+ V A
Sbjct: 23 IEGHLRVEMEAGDGVIKNA-WTSTTQYRGIEVIACKRDPRDVWAFVERICGVCTGTHAIA 81
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV---------------- 123
AVE L +P++ +L+R L S I H+++
Sbjct: 82 ALAAVEDALQYPVPVQARLMRDLVSGALGIQDHVIHFYQLQAMDWVDVMSALKADPAETA 141
Query: 124 --------------GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL 169
++ + +G H AY P V+
Sbjct: 142 AIAKSLSDWPLSSAAYFAGVQKKLKDSIAYGQYSIFTNGYWGHPAYKLPPEVNLLGVAHY 201
Query: 170 VEDIGCWCDSFPSA 183
++ + D
Sbjct: 202 LQALVWQRDMIKIH 215
Score = 80.4 bits (197), Expect = 5e-13, Method: Composition-based stats.
Identities = 26/250 (10%), Positives = 65/250 (26%), Gaps = 31/250 (12%)
Query: 175 CWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRG----SGAAWD 230
+ + P + I + +T + + G + ++G +
Sbjct: 320 DYRNVLPFDQDKIREFVTSSWYRYTEGRDAGLAPYDGETNADYNGPRPPYKWLSDHPQYT 379
Query: 231 LRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKI--------IRQCVNRLLG 282
K+ Y+ ++ G + K+ + + R+ G
Sbjct: 380 WVKAPRYDGHAMAVGPNARMMIGYAQGVPAIVERVDAACDKLGLPRDNAFMNSTLGRVYG 439
Query: 283 KNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGV 342
+ ++ + D R+ E+ + + + + VEAP+G
Sbjct: 440 RALDALINVDMMVDQLQEMTDRIRNGETSTFNPEKWEPETWPSSCKGVGWVEAPRGSLSH 499
Query: 343 YLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKG---HQLAD------VSAIL 384
++ + + P + + E+ H L D +
Sbjct: 500 WVRI-ENGQTVNYQAVVPSTWNSSGRDAAGQMGPYEYSLAHTGKHPLVDPSRPVEPLRTI 558
Query: 385 GSLDIVFGEV 394
S D
Sbjct: 559 HSYDPCQSCA 568
>gi|20378813|gb|AAM20995.1| hydrogenase large subunit [Azorhizobium caulinodans ORS 571]
Length = 151
Score = 86.5 bits (213), Expect = 6e-15, Method: Composition-based stats.
Identities = 21/92 (22%), Positives = 39/92 (42%)
Query: 30 LDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLG 89
+D V R G + RG E +++ + A + +R+ V AVE L
Sbjct: 1 VDANNVIRNAVSTGTMWRGLEVIMKGRDPRDAWAFVERICGVCTGCHALTSVRAVEDALQ 60
Query: 90 IEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
I+IP LIR + +++ + H+++
Sbjct: 61 IKIPNNAFLIREIMAKVLQWHDHVVHFYHLHA 92
>gi|207109476|ref|ZP_03243638.1| quinone-reactive Ni/Fe hydrogenase, large subunit (hydB)
[Helicobacter pylori HPKX_438_CA4C1]
Length = 119
Score = 86.5 bits (213), Expect = 7e-15, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 18/83 (21%)
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQ 376
G V P+G ++ + P + A E G +
Sbjct: 16 KGRYIGQV--PRGMLSHWVRIK-NGVVENYQAVVPSTWNAGPRDSQNQRGAYEMSLIGTK 72
Query: 377 LAD------VSAILGSLDIVFGE 393
+AD + + S D
Sbjct: 73 IADLTQPLEIIRTIHSFDPCIAC 95
>gi|323261714|gb|EGA45287.1| putative hydrogenase-1 large subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
Length = 93
Score = 85.8 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 16/75 (21%)
Query: 334 EAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLA------ 378
EAP+G G ++ K + P + + A E G +LA
Sbjct: 2 EAPRGALGHWIKI-ENQKIDSYQCVVPTTWNAGPRDDKGQIGAYEAALMGTKLAVPDQPL 60
Query: 379 DVSAILGSLDIVFGE 393
++ L S D
Sbjct: 61 EILRTLHSFDPCLAC 75
>gi|83376055|gb|ABC17836.1| HupK [Bradyrhizobium sp. UPM1029]
Length = 364
Score = 84.6 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 56/353 (15%), Positives = 97/353 (27%), Gaps = 45/353 (12%)
Query: 51 KLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRIL 110
+L K +P L + + A+ AVE G E RV + R+
Sbjct: 35 RLFAGKPAASLLPVLPHLFSLCSIAHHVAFQSAVEAAQGREAAPATVRRRVTAVVVERLT 94
Query: 111 SHLLNVTTQAMDV-GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL 169
L + + + G P + +M G+ P +H+D
Sbjct: 95 ELLRGLFVGRLALDGTNAPAVRA------VMQASALLGGADE----AVPPALHRDA---- 140
Query: 170 VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAW 229
V I + A + + + G + E F
Sbjct: 141 VAQIKAALGAMGIAGEEDETPAPSSPLAASVAGCHGKLVSEPEADPSFL----------- 189
Query: 230 DLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPV 289
+LD + G Y + E+ R+ + + G
Sbjct: 190 --------TVADDLDIVTRLLADGAAYSDAPDLCGRIPETGVWARRARREAVSAAEAGSA 241
Query: 290 SASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGG 349
+ +I R + Y + G+ AAVE +G + D
Sbjct: 242 ARLKARIAEVARLCAWLD-RGDADLDEGVVASYRLGAGKGAAAVECARGRLHHAVALDDE 300
Query: 350 NKPYRCKIRAPGYAHL---QAMEFLCKGHQLA------DVS-AILGSLDIVFG 392
++ + AP + + KG LA D A++GS D G
Sbjct: 301 DRIVNFEFLAPTEWNFHARGPLVRSLKGATLATGRQGQDAVRALVGSFDPCVG 353
>gi|290790814|gb|ADD63071.1| NADH-plastoquinone oxidoreductase subunit 7 [Potamophila
parviflora]
Length = 56
Score = 84.6 bits (208), Expect = 3e-14, Method: Composition-based stats.
Identities = 26/51 (50%), Positives = 32/51 (62%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIE 54
+ +N GP HP+ HGVLRLI+ LDGE V +P +G LHRG EK E
Sbjct: 6 TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKXXE 56
>gi|297740924|emb|CBI31106.3| unnamed protein product [Vitis vinifera]
Length = 131
Score = 84.6 bits (208), Expect = 3e-14, Method: Composition-based stats.
Identities = 39/67 (58%), Positives = 50/67 (74%), Gaps = 1/67 (1%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
+ +FT+N PQH AAHGV R +LE++GE+VE +PHIG L GTEKLIE KT+LQA+PY
Sbjct: 7 QITNFTLNSRPQHSAAHGVSRSVLEMNGEVVECAEPHIGSLQ-GTEKLIEYKTYLQALPY 65
Query: 65 FDRLDYV 71
DR +
Sbjct: 66 SDRSEGD 72
>gi|1289344|gb|AAA98522.1| hydrogenase large subunit [Prochlorothrix hollandica]
Length = 256
Score = 83.5 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 32/185 (17%), Positives = 55/185 (29%), Gaps = 21/185 (11%)
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
R+ + P++ A A +K+L +++PI + +R L + SH L+ +
Sbjct: 7 ITARICGICPVSHLLAAAKTGDKILAVKVPIAAEKLRRLMNLAQLTQSHALSFFHLSSPD 66
Query: 124 G-------------------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQD 164
G R+ E ++HAA+ PGGV
Sbjct: 67 FLLGWDSDPARRNVFGLIDANPDLARAGIRLRQFGQTIIELLGARKIHAAWTVPGGVRSP 126
Query: 165 IPPELVEDIGCWCDSFPSALNDISDLL--TGNRIFKQRNVNIGTVKLEDAWGWGFSGVMI 222
+ E + I + L DL ++ K G G
Sbjct: 127 LTEESRQWILDRLPESFATLQTALDLFKGLLDKALKDEVGIFGEFPSLFMSLVAADGAWE 186
Query: 223 RGSGA 227
G
Sbjct: 187 HYGGH 191
>gi|58042480|gb|AAW63680.1| NADH dehydrogenase subunit 7 [Asarum sp. Qiu 96018]
Length = 65
Score = 83.1 bits (204), Expect = 7e-14, Method: Composition-based stats.
Identities = 40/64 (62%), Positives = 49/64 (76%)
Query: 312 IHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFL 371
IHHF+ YTEG+ VP Y AVEAPKGEFGV+L+S+G N+PYR KIRAPG AH Q ++ +
Sbjct: 2 IHHFEPYTEGFSVPAPSTYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSM 61
Query: 372 CKGH 375
K H
Sbjct: 62 SKHH 65
>gi|302676600|ref|XP_003027983.1| hypothetical protein SCHCODRAFT_237320 [Schizophyllum commune H4-8]
gi|300101671|gb|EFI93080.1| hypothetical protein SCHCODRAFT_237320 [Schizophyllum commune H4-8]
Length = 222
Score = 82.3 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 76/223 (34%), Positives = 107/223 (47%), Gaps = 39/223 (17%)
Query: 31 DGEI--VERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEK-L 87
+G V V +IG IE KT+ QA+P+FDRL YV+ M E ++ VEK L
Sbjct: 29 EGGRGSVRHVTVNIGHS-----TFIEFKTYTQALPHFDRLGYVSMMGYEVCCSVVVEKPL 83
Query: 88 LGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERAS 147
IE P R IR L+ EI RIL+HL+ V T+AM+VGALTP L G +
Sbjct: 84 RNIEAPARAGWIRALFGEIARILNHLMAVLTRAMNVGALTPCLRGLRGAREAYEVLR--- 140
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTV 207
RPGGV D+P L++D + S +++I ++TGNRI +QR +N G
Sbjct: 141 --------VRPGGVAFDLPHSLLDDTFKRATQYSSHVDEIDKVVTGNRISEQRTINGGRP 192
Query: 208 KLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
+ R + PY+ Y ++ I +G
Sbjct: 193 Q--------------------HTYRLASPYDAYDQVITKIVVG 215
>gi|303325433|ref|ZP_07355876.1| hydrogenase subunit [Desulfovibrio sp. 3_1_syn3]
gi|302863349|gb|EFL86280.1| hydrogenase subunit [Desulfovibrio sp. 3_1_syn3]
Length = 140
Score = 81.9 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 34/164 (20%), Positives = 55/164 (33%), Gaps = 25/164 (15%)
Query: 232 RKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSA 291
R P D + GD R LVR E+ +S+ ++R + RL + VSA
Sbjct: 1 RFHAPLSELPVGDHGPRRERGGDVLARALVRSHELDDSLALLRDDLARLAACPETPAVSA 60
Query: 292 SDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNK 351
P R A VE +GE ++ +
Sbjct: 61 LSRPPRLPARKL-------------------------AVAQVEGWRGEICHLAVTGTNGE 95
Query: 352 PYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
P CKI P + + + +G Q++D S ++ + D
Sbjct: 96 PLVCKIVDPSFHNWPGLALAMRGGQISDFPLCNKSFNLSYCGHD 139
>gi|102041|pir||D25877 MURF3 protein - Crithidia fasciculata mitochondrion (fragment)
Length = 92
Score = 81.9 bits (201), Expect = 2e-13, Method: Composition-based stats.
Identities = 36/69 (52%), Positives = 41/69 (59%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M K + FGPQHPAAHGVL +L L GE + +D IG LHRGTEKL E KT Q
Sbjct: 24 MTNVKRHLYRFTFGPQHPAAHGVLCCLLYLSGEFITYIDVIIGYLHRGTEKLCEYKTVEQ 83
Query: 61 AVPYFDRLD 69
+P RL
Sbjct: 84 CLPMKIRLC 92
>gi|145112|gb|AAA23378.1| periplasmic [NiFe]hydrogenase protein large subunit [Desulfovibrio
gigas]
Length = 560
Score = 81.5 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 10/106 (9%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ +E++G ++ + L RG E +++ + A + R
Sbjct: 17 IEGHLRIEVEVEGGKIKNA-WSMSTLFRGLEMILKGRDPRDAQHFTQR-----AWAVHLC 70
Query: 80 YALAVE----KLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+ +G++IP L+R L + HL++
Sbjct: 71 ACPGLRPRRGNCVGVKIPENATLMRNLTMGAQYMHDHLVHFYHLHA 116
Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 16/62 (25%)
Query: 351 KPYRCKIRAPGYAHL--------QAMEFLCKGHQLAD------VSAILGSLDIVFGEV-- 394
K + P +L A+E G +AD + + S D
Sbjct: 467 KIENFQHVVPSTWNLGPRCAEKLSAVEQALIGTPIADPKRPVEILRTVHSYDPCIACAAR 526
Query: 395 DR 396
DR
Sbjct: 527 DR 528
>gi|330948096|gb|EGH48356.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D
[Pseudomonas syringae pv. pisi str. 1704B]
Length = 107
Score = 81.5 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 43/111 (38%), Positives = 64/111 (57%), Gaps = 4/111 (3%)
Query: 193 GNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKH 252
N I K R V + T ++A WG +G +R +G +DLRK++PY Y +F++P+ +
Sbjct: 1 KNSILKGRTVGVATYNTKEALEWGVTGAGLRSTGCDFDLRKARPYSGYENFEFEVPLAAN 60
Query: 253 GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
GD YDR +VR+ EMR+S+KII QC+ + GP A P PP +
Sbjct: 61 GDAYDRCMVRVEEMRQSIKIIDQCMRNM----PEGPYKADHPLTTPPPKER 107
>gi|289064365|gb|ADC80556.1| bidirectional NAD(P)-linked NiFe hydrogenase [uncultured
Comamonadaceae bacterium]
Length = 248
Score = 81.1 bits (199), Expect = 3e-13, Method: Composition-based stats.
Identities = 25/202 (12%), Positives = 56/202 (27%), Gaps = 23/202 (11%)
Query: 210 EDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRES 269
D + IR W K + D +G +
Sbjct: 43 FDHNDYSHYDEYIREGVKNWSYMKFPFISSLGQDDGWYRVGPLARVNNCDFFTTPLAE-- 100
Query: 270 VKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGE- 328
K + ++ GK ++ +++ ++ L++ L + + G+
Sbjct: 101 -KERIEFISIGNGKPVQSTLAFHWARLIELLHCS--EAIAELLNDKDLCGKEL-LNSGKL 156
Query: 329 ---VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCK--------GHQL 377
+EAP+G + + + + + QAM + G+QL
Sbjct: 157 QNIGTGVIEAPRGTLFHHCEINDDGLVEKASLIVSTTNNNQAMNESIREVANQYLDGNQL 216
Query: 378 AD-----VSAILGSLDIVFGEV 394
+ V + + D
Sbjct: 217 TEALLNQVEVAIRAYDPCLSCA 238
>gi|118592986|ref|ZP_01550373.1| HupV protein [Stappia aggregata IAM 12614]
gi|118434293|gb|EAV40947.1| HupV protein [Stappia aggregata IAM 12614]
Length = 117
Score = 81.1 bits (199), Expect = 3e-13, Method: Composition-based stats.
Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 2/114 (1%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
GP + G L + L++ V + L+RG E+++ K L A+ Y R+ +
Sbjct: 6 VGPFN-RVEGDLEVKLDIQDGRVHQAQVVSP-LYRGFERILAGKPPLDALVYAPRICGIC 63
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
++Q A A ++ +G+ +P G+L L + HL + M
Sbjct: 64 SVSQSVAAAKSLAAAMGLSMPANGELAVNLIHAAENVADHLTHFYLFFMPDFVR 117
>gi|297521335|ref|ZP_06939721.1| formate hydrogenlyase subunit 5 [Escherichia coli OP50]
Length = 75
Score = 81.1 bits (199), Expect = 3e-13, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 354 RCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
R + RA YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 1 RWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 43
>gi|167723606|ref|ZP_02406842.1| putative hydrogenase subunit [Burkholderia pseudomallei DM98]
Length = 133
Score = 80.0 bits (196), Expect = 6e-13, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 45/129 (34%), Gaps = 4/129 (3%)
Query: 267 RESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV 326
ES++ IR + L ++ VP RAD + E + G
Sbjct: 8 YESMRAIRALLADLPDDGLAAEIAPGAN--VPGARADAGGAGEGEEGGDAAFCPGDARR- 64
Query: 327 GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGS 386
+E +G V L D RC P + + A+E G+ +AD I S
Sbjct: 65 -RGIGWIEGWRGPVFVALELDARGAVARCHCHDPSWHNWPALEHAIIGNIVADFPLINKS 123
Query: 387 LDIVFGEVD 395
++ + D
Sbjct: 124 FNLNYAGHD 132
>gi|257054867|ref|YP_003132699.1| Ni,Fe-hydrogenase I large subunit [Saccharomonospora viridis DSM
43017]
gi|256584739|gb|ACU95872.1| Ni,Fe-hydrogenase I large subunit [Saccharomonospora viridis DSM
43017]
Length = 601
Score = 80.0 bits (196), Expect = 6e-13, Method: Composition-based stats.
Identities = 15/145 (10%), Positives = 33/145 (22%), Gaps = 22/145 (15%)
Query: 270 VKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP-VGE 328
V++ + + ++ ++ + E + VP
Sbjct: 431 VRLEWRPPRYANTLERNRARMYFVAYAAGMALHFVEEALAEVRSGNTKVFENFDVPDEAI 490
Query: 329 VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQL-- 377
EA +G +L+ K P + E +G +
Sbjct: 491 GVGFHEAVRGVLSHHLVIR-DGKIANYHPYPPTPWNASPRDVYGTPGPYEDAVQGTPIFE 549
Query: 378 ---------ADVSAILGSLDIVFGE 393
D+ + S D
Sbjct: 550 ENGKDDFKGIDIMRTVRSFDPCLPC 574
Score = 77.7 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 35/284 (12%), Positives = 61/284 (21%), Gaps = 53/284 (18%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELD--GEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
+ + +NF P G L + ++D V L RG ++ K
Sbjct: 12 QAQRELVEVNFDPIT-RIIGNLGIYTKVDFANNEVVECR-STSSLFRGYSVFMKGKDPRD 69
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
+ R+ + N A G++ P +I L + H +
Sbjct: 70 SHFITSRICGICGDNHAVCSIYAQNMAYGVKPPPLADMIMNLGEAAEFMFDHTIFQDNMV 129
Query: 121 MDVGALTP------------------------------------------PLWGFEEREK 138
E
Sbjct: 130 FVDFCERMVAETNPSLLKQAETTEAPRGDLHGYRTIADIMRAFNPFEGEVYKRALEISRI 189
Query: 139 LMVFYERASGSRMHAAYFRPGGVHQDIPP----ELVEDIGCWCDSFPSALNDISDLLTGN 194
G +H + PGGV P + + + D A+ D+
Sbjct: 190 TREMCCLMEGRHVHPSTLYPGGVGTVATPQVFTDYLSRLLRCLDFIKQAVAMNDDVFDFF 249
Query: 195 RIFKQRNVNIGTVKLEDAWGWGFSGVM---IRGSGAAWDLRKSQ 235
+G ++ F R A R
Sbjct: 250 YDALPGYEEVGRRRIMLGCWGCFQNPYTVDYRYENMASWGRDMF 293
>gi|213619208|ref|ZP_03373034.1| formate hydrogenlyase subunit 5 [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 140
Score = 80.0 bits (196), Expect = 6e-13, Method: Composition-based stats.
Identities = 41/171 (23%), Positives = 65/171 (38%), Gaps = 31/171 (18%)
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+L +QR V IG + E A + G M+R SG A D R P+ Y L ++
Sbjct: 1 MLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHS 60
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
+ D R VR+ E+ S+ +I ++ L G GP+ +P + A
Sbjct: 61 EQGCDVISRLKVRINEVYTSLNMIDFGLDNLPG----GPLMVEGFTYIPHRFAL------ 110
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
EAP+G+ + ++ K YR + RA
Sbjct: 111 ---------------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAA 140
>gi|83987|pir||E22848 hypothetical ORF-3 protein - Leishmania tarentolae mitochondrion
(fragment)
Length = 81
Score = 80.0 bits (196), Expect = 6e-13, Method: Composition-based stats.
Identities = 34/65 (52%), Positives = 39/65 (60%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
K + FGPQHPAAHGVL +L L GE + +D IG LHRGTEKL E KT Q +P
Sbjct: 13 KRHLYRFTFGPQHPAAHGVLCCLLYLSGEFITYIDVIIGYLHRGTEKLCEYKTVEQCLPM 72
Query: 65 FDRLD 69
L
Sbjct: 73 KTGLC 77
>gi|297520248|ref|ZP_06938634.1| hydrogenase 4, subunit HyfG [Escherichia coli OP50]
Length = 74
Score = 80.0 bits (196), Expect = 7e-13, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 354 RCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
R + RA YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 1 RWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 43
>gi|289064372|gb|ADC80558.1| bidirectional NAD(P)-linked NiFe hydrogenase [uncultured
Burkholderiales bacterium]
Length = 276
Score = 79.6 bits (195), Expect = 8e-13, Method: Composition-based stats.
Identities = 31/265 (11%), Positives = 66/265 (24%), Gaps = 26/265 (9%)
Query: 153 AAYFRPGGVHQDIPPELVEDIGCW---CDSFPSALNDISDLLTGNRIFKQRNVNIGTVKL 209
+D+ L + D+F S + L+ N + + + +
Sbjct: 5 PGIDXMIEWTRDVLDFLADYFSQHRGVVDTFASFDSGHLGLVGPNGELELYDGRMRAIDA 64
Query: 210 EDAWGWGFSGVMIRGSGAAWDLRKSQPYE-CYSELDFDIPIGKHGDCYDRYLVRMMEMRE 268
A + S + + + Y + R V
Sbjct: 65 FGARTLHDVPDISYASHFSESVESWTYLKFPYLKERGRELGWNRVGPLARLNVCNHIPTP 124
Query: 269 SVKIIRQC-VNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVG 327
+ RQ GK + +I+ + L+H + ++ G
Sbjct: 125 IAEEARQAYFAFAGGKPVNRSLYYHWARIIEMVHCA--ELIRDLLHDPDILSDDLR-REG 181
Query: 328 E----VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGH-------- 375
+ VEAP+G + +D C + + +AM
Sbjct: 182 QRRPVGIGVVEAPRGTLIHHYEADDKGIITLCNLIVSTTHNNEAMNRAVSHVARARLDRQ 241
Query: 376 ------QLADVSAILGSLDIVFGEV 394
L ++ + + D
Sbjct: 242 PEITEPMLNEIEVAIRAYDPCLSCA 266
>gi|94269937|ref|ZP_01291610.1| NAD-reducing hydrogenase, beta subunit [delta proteobacterium
MLMS-1]
gi|93451010|gb|EAT01981.1| NAD-reducing hydrogenase, beta subunit [delta proteobacterium
MLMS-1]
Length = 178
Score = 79.6 bits (195), Expect = 8e-13, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 30/129 (23%), Gaps = 15/129 (11%)
Query: 280 LLGKNKVGPVSASDPKIVP--PKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPK 337
+++ + + K E EAP+
Sbjct: 25 AANALPQSAFHYHYARLIEIIHGLERIGELLNEPEILGKRVRATAGANAPEGVGICEAPR 84
Query: 338 GEFGVYLISDGGNKPYRCKIRAPGYAH--------LQAMEFLCKGHQLAD-----VSAIL 384
G + D K + + LQA L + Q ++ + A++
Sbjct: 85 GTLIHHYGIDEEGKISAVNMIIATGNNNLAINQGLLQAARALIQNGQFSEGALNRIEALV 144
Query: 385 GSLDIVFGE 393
D
Sbjct: 145 RCYDPCLSC 153
>gi|144897522|emb|CAM74386.1| HupV protein [Magnetospirillum gryphiswaldense MSR-1]
Length = 181
Score = 79.2 bits (194), Expect = 9e-13, Method: Composition-based stats.
Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 3/137 (2%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
GP + G L + L++ V+ L+RG E+++ + A+ R+ +
Sbjct: 10 MGPFN-RVEGDLEVSLDVSAGQVQSARVTAP-LYRGFEQILAGRPPEDALVIAPRICGIC 67
Query: 73 PMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWG 132
++Q A A A+ ++ G ++P G+L+ L HL + M A
Sbjct: 68 SVSQSVAAARALAQIAGTQMPDNGRLVTDLVLAAENAADHLTHFVLFFMPDFARPVYADR 127
Query: 133 FEEREKLMVFYERASGS 149
E + G
Sbjct: 128 -PWFEAAHRRFAAQGGQ 143
>gi|289805655|ref|ZP_06536284.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Typhi str. AG3]
Length = 93
Score = 79.2 bits (194), Expect = 1e-12, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ +V + G + RG E++++ + A R+ V +
Sbjct: 13 IEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHAIS 71
Query: 80 YALAVEKLLGIE-IPIRGQLIR 100
A E L I+ P Q IR
Sbjct: 72 SVRAAESALNIDSFPYNAQYIR 93
>gi|296270587|ref|YP_003653219.1| cytochrome-c3 hydrogenase [Thermobispora bispora DSM 43833]
gi|296093374|gb|ADG89326.1| Cytochrome-c3 hydrogenase [Thermobispora bispora DSM 43833]
Length = 600
Score = 78.4 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/236 (11%), Positives = 46/236 (19%), Gaps = 42/236 (17%)
Query: 45 LHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYS 104
+ RG + K A R+ + N A GI+ P + I L
Sbjct: 54 VFRGYSVFMRGKDPRDAHFITSRICGICGDNHAVCSIYAQNMAYGIKPPPLAEWIINLGE 113
Query: 105 EIGRILSHLLNVTTQAMDV----------------------------------------- 123
+ H L
Sbjct: 114 AAEFMFDHTLFQDNLVFVDYCEQMVKQTNPSLLRRAETTEAPRAHIHGYRTIADIMRAYN 173
Query: 124 -GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+ + G +H + PGGV P++ D
Sbjct: 174 PFSGEMYRESLQMSRITREMCCLMEGRHVHPSTLYPGGVGTVPTPQVFTDYLARLLKVID 233
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
+ L F + G G +D R + +
Sbjct: 234 FVKKAVPLNDDLFDFFYEALPGYEEVGRRRIMLGCWGAFQDPDYVDYDYRNMREWG 289
Score = 72.3 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 14/125 (11%), Positives = 31/125 (24%), Gaps = 22/125 (17%)
Query: 290 SASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP-VGEVYAAVEAPKGEFGVYLISDG 348
+ ++R+++ + + + VP EA +G +++
Sbjct: 451 AYFIAYSAAVALHFVERALDEVRAGRTKVFQEFEVPDEAIGCGFHEAVRGVLSHHMVIR- 509
Query: 349 GNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQL-----------ADVSAILGSLD 388
K P + E +G L D+ + S D
Sbjct: 510 DGKIANYHPYPPTPWNASPRDVYGTPGPYEDAVQGMHLFEENGPEDFKGIDIMRTVRSFD 569
Query: 389 IVFGE 393
Sbjct: 570 PCLPC 574
>gi|289809305|ref|ZP_06539934.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 97
Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 27/71 (38%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
+R + +D V G + RG E +++ + A + +R+ V
Sbjct: 27 IEEHMRCEVNIDSNNVITNAVSTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGTHALT 86
Query: 80 YALAVEKLLGI 90
AVE LGI
Sbjct: 87 SIRAVENALGI 97
>gi|226363960|ref|YP_002781742.1| NiFe hydrogenase large subunit [Rhodococcus opacus B4]
gi|226242449|dbj|BAH52797.1| putative NiFe hydrogenase large subunit [Rhodococcus opacus B4]
Length = 597
Score = 77.7 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 15/109 (13%), Positives = 26/109 (23%), Gaps = 21/109 (19%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K E H K + + G EA +G +++ K P +
Sbjct: 465 KALAEIRAGHTKTWEKFEVPDEGIGCGFTEAVRGVLSHHMVIR-DGKIANYHPYPPTPWN 523
Query: 365 L---------QAMEFLCKGHQL-----------ADVSAILGSLDIVFGE 393
E +G + D+ + S D
Sbjct: 524 ANPRDSFGTPGPYEDAVQGQPIFEENDREHFKGIDIMRTVRSFDPCLPC 572
Score = 68.8 bits (167), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/222 (10%), Positives = 43/222 (19%), Gaps = 46/222 (20%)
Query: 45 LHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYS 104
+ RG ++ K A R+ + N G++ P G+ I L
Sbjct: 54 IFRGYSIFMKGKDPRDAHFITSRICGICGDNHATCSCYTQNMAYGVQPPHIGEWIVNLGE 113
Query: 105 EIGRILSHLLNVTTQAMDVGALTP------------------------------------ 128
+ H +
Sbjct: 114 AAEYMFDHNIFQENLVGVDFCEKMVSETNPGVLAQAEKTEAPHAGEHGYKTIADIMRSLN 173
Query: 129 ------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS--- 179
+ + G +H + PGGV +L+ D
Sbjct: 174 PFTGEFYREALQVSRWTREMFCLMEGRHVHPSTLYPGGVGTVATIQLMTDYTTRLMRYVE 233
Query: 180 -FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGV 220
+ DL +G + F
Sbjct: 234 FMKKVVPMHDDLFDFFYEAMPGYEKVGLRRTLLGCWGSFQDP 275
>gi|87245260|gb|ABD34839.1| HoxH [Lyngbya aestuarii]
Length = 118
Score = 77.7 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 15/106 (14%), Positives = 29/106 (27%), Gaps = 17/106 (16%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVG----EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
+E L++ + + G E EAP+G + D + +
Sbjct: 12 LEEIERLVNDPDIVSSRVRANAGINNLEGIGVSEAPRGTLFHHYNVDENGLIQKVNLIIA 71
Query: 361 GYAHLQAMEFL--------CKGHQLAD-----VSAILGSLDIVFGE 393
+ AM G + + V A + + D
Sbjct: 72 TGQNNLAMNKTVTQIAKHYIHGQDIPEGLLNRVEAGIRAFDPCLSC 117
>gi|111021576|ref|YP_704548.1| Ni-dependent hydrogenase large subunit [Rhodococcus jostii RHA1]
gi|110821106|gb|ABG96390.1| Ni-dependent hydrogenase large subunit [Rhodococcus jostii RHA1]
Length = 597
Score = 77.7 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 15/109 (13%), Positives = 26/109 (23%), Gaps = 21/109 (19%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K E H K + + G EA +G +++ K P +
Sbjct: 465 KALAEIRAGHTKTWEKFEVPDEGIGCGFTEAVRGVLSHHMVIR-DGKIANYHPYPPTPWN 523
Query: 365 L---------QAMEFLCKGHQL-----------ADVSAILGSLDIVFGE 393
E +G + D+ + S D
Sbjct: 524 ANPRDSFGTPGPYEDAVQGQPIFEENDREHFKGIDIMRTVRSFDPCLPC 572
Score = 68.4 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/222 (10%), Positives = 43/222 (19%), Gaps = 46/222 (20%)
Query: 45 LHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYS 104
+ RG ++ K A R+ + N G++ P G+ I L
Sbjct: 54 IFRGYSIFMKGKDPRDAHFITSRICGICGDNHATCSCYTQNMAYGVQPPHIGEWIVNLGE 113
Query: 105 EIGRILSHLLNVTTQAMDVGALTP------------------------------------ 128
+ H +
Sbjct: 114 AAEYMFDHNIFQENLVGVDFCEKMVSETNPGVLAQAEKTEAPHAGEHGYKTIADIMRSLN 173
Query: 129 ------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS--- 179
+ + G +H + PGGV +L+ D
Sbjct: 174 PFTGEFYREALQVSRWTREMFCLMEGRHVHPSTLYPGGVGTVATIQLMTDYTTRLMRYVE 233
Query: 180 -FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGV 220
+ DL +G + F
Sbjct: 234 FMKKVVPMHDDLFDFFYEAIPGYEKVGLRRTLLGCWGSFQDP 275
>gi|148253517|ref|YP_001238102.1| hydrogenase expression/formation [Bradyrhizobium sp. BTAi1]
gi|146405690|gb|ABQ34196.1| Hydrogenase expression/formation [Bradyrhizobium sp. BTAi1]
Length = 368
Score = 77.3 bits (189), Expect = 4e-12, Method: Composition-based stats.
Identities = 46/351 (13%), Positives = 90/351 (25%), Gaps = 37/351 (10%)
Query: 51 KLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRIL 110
+L K + RL + + + A A+E G + P + R+ + R
Sbjct: 35 RLFAGKPAETLLAALPRLFSLCAIAHQVALLSALEAARGHQAPPLTRHRRITAVIMERFA 94
Query: 111 SHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELV 170
L V + F + + +G+ + R + Q +
Sbjct: 95 ELLRGVLVSRLACDRSALAQLQFLLQAVASLQVSAGAGNARQS---RSATLSQIK----M 147
Query: 171 EDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWD 230
S + + L + ++ + G GV+
Sbjct: 148 ALAALGLGSVAEPVVRGTPLASIMDAARRAEADGG-----WKQMPAEHGVLSAADDDTVV 202
Query: 231 LRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVS 290
R P + + E+ RQ
Sbjct: 203 ARLIDPQAA----------------FAEAPELAGRVPETGVWARQASRHRHSSAGSVERL 246
Query: 291 ASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGN 350
+ + ++ + Y + G AAVE +G + D
Sbjct: 247 LAKLAELAELLCWIEAGEAEDEAADQDVVASYALGPGRGAAAVECARGRLHHAIELDAEG 306
Query: 351 KPYRCKIRAPGYAHL---QAMEFLCKGHQL---AD---VSAILGSLDIVFG 392
+ R + AP + + G +L AD + A++ S D G
Sbjct: 307 RVRRFEFLAPTEWNFHPRGPVAGSLTGARLCGSADRAAIEAMISSFDPCVG 357
>gi|83592503|ref|YP_426255.1| putative hydrogenase expression/formation protein HupK
[Rhodospirillum rubrum ATCC 11170]
gi|83575417|gb|ABC21968.1| putative hydrogenase expression/formation protein HupK
[Rhodospirillum rubrum ATCC 11170]
Length = 406
Score = 77.3 bits (189), Expect = 4e-12, Method: Composition-based stats.
Identities = 60/409 (14%), Positives = 110/409 (26%), Gaps = 64/409 (15%)
Query: 26 LILELDGEIVERVDPHIGLLHRGTE--KLIETKTFLQAVPYFDRLDYVAPMNQEHAYALA 83
L L ++G + R D R E K++E + +A+ + + Q A A
Sbjct: 12 LRLHVEGGRLARFDLTST---RRPEAAKVLEGRPVDEALALVPLMFALCATAQGAAAGAA 68
Query: 84 VEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFE--------- 134
+E LG R +R L ++ + H ++ A + + + G
Sbjct: 69 IEAALGHRRSPRILALRRLRVDVEILADHARHLLVDAPRLVGGSADIPGARRILGLARAL 128
Query: 135 --------------EREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
+ E H + D +
Sbjct: 129 ANALADPSPAPGPAPGDLARDLKEAIG---THGFAMPVERFAAIGTARHLIDWAMAAPTS 185
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
P+ L + +L G R K V G++ +G A+ R
Sbjct: 186 PAHLLREAHVLEGFRARKAVAVPPLLAPTAPDEIKALIGMIDGAAGEAFLAR-------- 237
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQC--VNRLLGKNKVGPVSASDPKIVP 298
G C + + + + + +
Sbjct: 238 ---------PTWGRCPRATGPAVRLAGQPLVARCGADWGAGITYRLVAVLCELALLACAL 288
Query: 299 PKRADMKRSMESLIHHFKLYTEGYHVPV---GEVYAAVEAPKGEFGVYLISDGGNKPYRC 355
P R +M + G V GE VEA +G ++ + R
Sbjct: 289 PARIAALEAMAEGREDGPARSSGDGVSARSSGEGVGMVEAARGLLIHRVVVRE-GRVARW 347
Query: 356 KIRAPGYAHL---QAMEFLCKGHQLADVS-------AILGSLDIVFGEV 394
+I AP +L A+ L G ++ ++ +LD V
Sbjct: 348 RILAPTEWNLHPQGALASLLIGCPVSGTEEACLLAHWLVLALDPCVPCV 396
>gi|119719505|ref|YP_920000.1| nickel-dependent hydrogenase, large subunit [Thermofilum pendens
Hrk 5]
gi|119524625|gb|ABL77997.1| nickel-dependent hydrogenase, large subunit [Thermofilum pendens
Hrk 5]
Length = 596
Score = 77.3 bits (189), Expect = 4e-12, Method: Composition-based stats.
Identities = 15/119 (12%), Positives = 35/119 (29%), Gaps = 22/119 (18%)
Query: 297 VPPKRADMKRSMESLIHHFKLYTEGYHVPVGE--VYAAVEAPKGEFGVYLISDGGNKPYR 354
V +++ +++E + + ++ P EAP+G +++ G +
Sbjct: 462 VAAAWSNVVKAVELVRSGRTKTSNPWNPPPRRTFGVGFTEAPRGTVRHWVV-QEGGRIVN 520
Query: 355 CKIRAPGYAH--------LQAMEFLCKGHQLA-----------DVSAILGSLDIVFGEV 394
+I AP + + E + D + S D
Sbjct: 521 YQIHAPTTGNVSPKDKWGMSPFEQSVANSVVTEEVPPDSWEGLDFVRAIRSFDPCIACA 579
Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 42/271 (15%), Positives = 72/271 (26%), Gaps = 47/271 (17%)
Query: 20 AHGVLRLILELDGEIVERVDPHIG-LLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G L L +D + D + + RG E + + AV R+ V + +
Sbjct: 14 IEGHLALRALVDTATKKPTDVWVFATMFRGFEVFLRGRPPEDAVHITSRICGVCGASHAN 73
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGR-ILSHLLNVTTQAMDVGA------LTPPLW 131
A A AV+ G+ G ++R + + + H L + + LTP +W
Sbjct: 74 ASAHAVDMAYGVAPEPLGVVLRNMAFAMTDALYDHPLILNMLGGPDYSELIVKKLTPSVW 133
Query: 132 GFEER------------------------------------EKLMVFYERASGSRMHAAY 155
ER G H +
Sbjct: 134 SDAERTDAPNRDIHGFPKIADIMRALNPIEGRLWQLTVKYSRIAREAGVLIYGRHSHPST 193
Query: 156 FRPGGVHQDIPPELVEDI--GCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAW 213
PGG+ D+ I + + + F + L
Sbjct: 194 LIPGGISTDLTNAEYLLIGYTYRLTKLTAWAKFLYAVWQDIVWFYEERHGYKEQGLTYRR 253
Query: 214 GWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
SG + A+ P + Y +D
Sbjct: 254 HNMVSG-GLFDDPEAYSALNGSPEDFYKNVD 283
>gi|94265050|ref|ZP_01288818.1| cytochrome-c3 hydrogenase-like protein [delta proteobacterium
MLMS-1]
gi|93454483|gb|EAT04771.1| cytochrome-c3 hydrogenase-like protein [delta proteobacterium
MLMS-1]
Length = 166
Score = 77.3 bits (189), Expect = 4e-12, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 1/105 (0%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G L++ + ++ GLL RG EK + A R+ V P + A
Sbjct: 13 VEGHLKIETTIKDGVITEAR-AAGLLFRGLEKALIGYDARVAQQVTQRVCGVCPYSHAEA 71
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
ALA+E +GI P GQL+R L + ++ LL+ +
Sbjct: 72 AALALEAAMGIRPPANGQLLRNLITGAYQVHDSLLHFYHLSALDF 116
>gi|312284556|gb|ADQ64090.1| bidirectional NAD(P) linked NiFe hydrogenase [uncultured
Oscillatoriales cyanobacterium]
gi|312284592|gb|ADQ64099.1| bidirectional NAD(P) linked NiFe hydrogenase [uncultured Cyanothece
sp.]
Length = 255
Score = 77.3 bits (189), Expect = 4e-12, Method: Composition-based stats.
Identities = 36/252 (14%), Positives = 65/252 (25%), Gaps = 49/252 (19%)
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG--- 124
+ + P++ A A +KLL ++IP G+ +R L + SH L+ +
Sbjct: 1 ICGICPVSHLLASAKTGDKLLAVKIPPAGEKLRRLMNLAQITQSHALSFFHLSSPDFLLG 60
Query: 125 ----------------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE 168
G R+ E ++H A+ GGV + E
Sbjct: 61 WDSNPATRNVFGLMTANPDLARGGIRLRQFGQQIIEILGAKKIHTAWAVAGGVRSPLSEE 120
Query: 169 LVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNI-GTVKLEDAWGWGFSGVMIRGSGA 227
I P+ + + L + V++ G G G G
Sbjct: 121 GRAWIRDRLPESPATIENALALFKNLLTELKTEVDVFGKFPSLFMSLVGKKGEWEHYGGH 180
Query: 228 -----------------------------AWDLRKSQPYECYSELDFDIPIGKHGDCYDR 258
W K Y+ D +G
Sbjct: 181 IRFVDSQGQIVADNLSEDDYQEYIGEAVEPWSYLKFPYYKPLGYPDGIYRVGPLARLNVC 240
Query: 259 YLVRMMEMRESV 270
+ + + +
Sbjct: 241 EYIDTPKANQEL 252
>gi|124028218|ref|YP_001013538.1| periplasmic hydrogenase large subunit [Hyperthermus butylicus DSM
5456]
gi|123978912|gb|ABM81193.1| Periplasmic hydrogenase large subunit [Hyperthermus butylicus DSM
5456]
Length = 641
Score = 76.9 bits (188), Expect = 5e-12, Method: Composition-based stats.
Identities = 36/245 (14%), Positives = 61/245 (24%), Gaps = 55/245 (22%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEI--VERVDPHIGLLHRGTEKLIETKTFLQ 60
+ SR+ I+ P G L L L +D E + RG E +
Sbjct: 2 TRTSRTIRIHIDPIT-RIEGHLGLRLHVDAETRKPTGEAWTFVTMFRGFEIFSIGRPPED 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIG-RILSHLLNVTT- 118
R+ V + +A LAV+ G+ G ++R + + I H + +
Sbjct: 61 LPHVTSRICGVCGASHANASVLAVDMAYGVSPKPMGVVLRNMAFAMTDHIYDHSIILGML 120
Query: 119 ---------------------------QAMDVGALT--------------PPLWGFEERE 137
G T + +
Sbjct: 121 EGPDYSAAIVSKFTPSVYDHAKKVYAEHRDIHGFTTIADIMEALNPLTGKVWQYAVRFQR 180
Query: 138 KLMVFYERASGSRMHAAYFRPGGVHQDIPPEL---------VEDIGCWCDSFPSALNDIS 188
G H + PGG+ DI + + W F + D+
Sbjct: 181 LAREAGVLIYGRHSHPSTLIPGGISTDISDAENLLLAYTTRLIKLTAWVKWFYALWEDLL 240
Query: 189 DLLTG 193
Sbjct: 241 SFFEK 245
Score = 69.2 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 37/285 (12%), Positives = 62/285 (21%), Gaps = 58/285 (20%)
Query: 166 PPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGS 225
E I + D ++ G + + + G
Sbjct: 333 LKEYQRSIMEHVERAFYEDWDKPRWYREQDPEGSPLLH-GKYDAKYHPWNKVTIPKLEGK 391
Query: 226 GAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRES---------------- 269
W + + + Y R L+ M
Sbjct: 392 AINWSGKYTWATHVRLVWKDGSILPFEVGPYARLLITSMHNYSVNVDGADAWFKAGGREI 451
Query: 270 -VKIIRQCVNRLLGK-NKVGPVSASDPKIVPPKRADMKRSMESLIH-------------- 313
V + R C + L G + P I R+ L+
Sbjct: 452 TVHLPRACTDELPGSVCEPMEFKWKVPPISTTIYRLWARAFNLLLDVVGAWKGVSQYRSL 511
Query: 314 HFKLYTE---GYHVPVGE--VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---- 364
K YTE + VP + EAP+G +++ K +I AP +
Sbjct: 512 LDKRYTETSRPWKVPRTITFGFGFTEAPRGTVRHWVV-QENGKVLNVQIHAPTTGNVSPH 570
Query: 365 ----LQAMEFLCKGHQLA-----------DVSAILGSLDIVFGEV 394
E + D + S D
Sbjct: 571 DRFGYSPFEQSALNSWVTEELPPEEWQGLDFVRSIRSFDPCLACA 615
>gi|298241648|ref|ZP_06965455.1| Cytochrome-c3 hydrogenase [Ktedonobacter racemifer DSM 44963]
gi|297554702|gb|EFH88566.1| Cytochrome-c3 hydrogenase [Ktedonobacter racemifer DSM 44963]
Length = 598
Score = 76.9 bits (188), Expect = 5e-12, Method: Composition-based stats.
Identities = 16/135 (11%), Positives = 32/135 (23%), Gaps = 22/135 (16%)
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L +++ + V D K E H K +++ EA +G
Sbjct: 442 NALERDRARTYFQAYAAAVALYCMD-KALAEIRAGHTKTWSDFSVPKEAIGCGFHEAVRG 500
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQL-----------A 378
+++ K P + E + +
Sbjct: 501 VLSHHMVI-ENGKIANYHPYPPTPWNASVRDIYGTPGPYEDAVQNTPIFEENGPDNFKGI 559
Query: 379 DVSAILGSLDIVFGE 393
D+ + S D
Sbjct: 560 DIMRTVRSFDPCLPC 574
Score = 72.7 bits (177), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/240 (11%), Positives = 49/240 (20%), Gaps = 50/240 (20%)
Query: 45 LHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYS 104
+ RG ++ K A R+ + N G++ P G+ I L
Sbjct: 54 IFRGYSLFMQGKDPRDAHFITSRICGICGDNHATCSVYTQNMAYGVKPPALGEWILNLGE 113
Query: 105 EIGRILSHLLNVTTQAMDVGALTP------------------------------------ 128
+ H L A
Sbjct: 114 AAEYMFDHNLYQENLAAVDFCEQMVRETNPGVLDLAEKTEAPHAKEHGYRTIADIMRSLN 173
Query: 129 ------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+ + G +H + PGGV +L D +
Sbjct: 174 PFSGEFYREALQMSRLAREKFCLMEGRHVHPSTLYPGGVGTVATVQLFTDYLVRLMRYVE 233
Query: 183 ALNDIS----DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
+ + DL +G + F +D R +
Sbjct: 234 FMKKVVPLHDDLFDFFYQALPGYEKVGYRQTLLGCWGSFQDP----DVCDYDYRTMNEWG 289
>gi|183981882|ref|YP_001850173.1| nickel/iron-hydrogenase I large subunit, HyaB [Mycobacterium
marinum M]
gi|183175208|gb|ACC40318.1| nickel/iron-hydrogenase I large subunit, HyaB [Mycobacterium
marinum M]
Length = 599
Score = 76.5 bits (187), Expect = 6e-12, Method: Composition-based stats.
Identities = 16/109 (14%), Positives = 25/109 (22%), Gaps = 21/109 (19%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K E K + + G EA +G +L+ K P +
Sbjct: 467 KALAEIRAGRTKTWEKFEVPDEGIGCGFTEAVRGVLSHHLVIR-NGKIANYHPYPPTPWN 525
Query: 365 L---------QAMEFLCKGHQL-----------ADVSAILGSLDIVFGE 393
E +G + DV + S D
Sbjct: 526 ANPRDSFGTPGPYEDAVQGQPIFEENDRENFKGIDVMRTVRSFDPCLPC 574
Score = 69.6 bits (169), Expect = 8e-10, Method: Composition-based stats.
Identities = 28/222 (12%), Positives = 48/222 (21%), Gaps = 46/222 (20%)
Query: 45 LHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYS 104
+ RG ++ K A R+ + N A G+ P G+ I L
Sbjct: 55 IFRGYSIFMKGKDPRDAHFITSRICGICGDNHATCSCYAQNMAYGVRPPHLGEWIVNLGE 114
Query: 105 EIGRILSHLLNV----------------------------TTQAMDVGALTP-------- 128
+ H + A G T
Sbjct: 115 AAEYMFDHNIFQENLVGVDFCEKMVSETNPGVLAKAEKTEAPHADAHGYKTIADIMRSLN 174
Query: 129 ------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+ + G +H + PGGV +L+ D +
Sbjct: 175 PFSGEFYREALQVSRWTREMFCLMEGRHVHPSTLYPGGVGTVATIQLMTDYMTRLMRYVE 234
Query: 183 ALNDIS----DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGV 220
+ + DL +G + F
Sbjct: 235 FMKKVVPLHDDLFDFFYDALPGYEKVGLRRTLLGCWGSFQDP 276
>gi|118592996|ref|ZP_01550383.1| Ni,Fe-hydrogenase I large subunit [Stappia aggregata IAM 12614]
gi|118434303|gb|EAV40957.1| Ni,Fe-hydrogenase I large subunit [Stappia aggregata IAM 12614]
Length = 353
Score = 76.5 bits (187), Expect = 7e-12, Method: Composition-based stats.
Identities = 43/318 (13%), Positives = 89/318 (27%), Gaps = 39/318 (12%)
Query: 51 KLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRIL 110
+L+ KT + + + V Q HA LA+E LGI+ P + R + + +
Sbjct: 31 RLMIGKTPEEVLKIIPLVHGVCATAQTHASVLALEGALGIKPPKQTLSARQTLTMMECLR 90
Query: 111 SH-LLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL 169
H L + +G + + F +G+ + L
Sbjct: 91 EHVLRAIIDWPKLMGQRGGVMAARQAIAFPPRFQAGFTGAEGAFGLNAEVAANLPHLAGL 150
Query: 170 VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAW 229
++D + ++ + + +D+ R Q AW G
Sbjct: 151 LDDATAFLET--AVFGEAADVWLSRRGHDQLRQWAAAADTTAAWFVG------------- 195
Query: 230 DLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPV 289
+ G+ G ++ +R+ + LL +
Sbjct: 196 ---------------WLFDTGRFGIAAFPAFGAGDTAVDATSYVRRASDPLLASLGAPAI 240
Query: 290 -SASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDG 348
+ ++V R + I + P+ VEA +G +
Sbjct: 241 GARFVARLVELAR------LPGEIRGVLIGETSAPAPLASGRGEVEAARGPLLHWARV-E 293
Query: 349 GNKPYRCKIRAPGYAHLQ 366
+ +I P +
Sbjct: 294 EGRVREYRIVPPTACNFA 311
>gi|261885851|ref|ZP_06009890.1| hydrogenase-4 component G [Campylobacter fetus subsp. venerealis
str. Azul-94]
Length = 87
Score = 75.8 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 348 GGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+K YR + RA Y + ++ + +G+ +AD + I+ SLD + +R
Sbjct: 4 DSHKVYRWRCRASTYNNWSSLRYQLQGNTIADAALIVCSLDPCYSCTER 52
>gi|302549354|ref|ZP_07301696.1| hydrogen:quinone oxidoreductase [Streptomyces viridochromogenes DSM
40736]
gi|302466972|gb|EFL30065.1| hydrogen:quinone oxidoreductase [Streptomyces viridochromogenes DSM
40736]
Length = 597
Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 16/124 (12%), Positives = 28/124 (22%), Gaps = 22/124 (17%)
Query: 291 ASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP-VGEVYAAVEAPKGEFGVYLISDGG 349
++ +M + E Y VP EA +G +L+
Sbjct: 450 YFVAYAAAMALQFLEEAMGLVRAGETKVFENYEVPDEAIGCGFHEAVRGVLSHHLVIK-D 508
Query: 350 NKPYRCKIRAPGYAHLQ---------AMEFLCKGHQL-----------ADVSAILGSLDI 389
K P + E +G + D+ + S D
Sbjct: 509 KKIANYHPYPPTPWNASPRDMYGTPGPYEDAVQGQPIFEENGPDDFKGVDIMRTVRSFDP 568
Query: 390 VFGE 393
Sbjct: 569 CLPC 572
Score = 68.8 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/222 (11%), Positives = 45/222 (20%), Gaps = 46/222 (20%)
Query: 45 LHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYS 104
L RG ++ K A R+ + N A + G++ P I L
Sbjct: 53 LFRGYSVFMKGKDPRDAGFITSRICGICGDNHTTCSDYAQQMAYGVKPPPLADYIVNLGE 112
Query: 105 EIGRILSHLLNVTTQAMDVGALTP------------------------------------ 128
I H +
Sbjct: 113 AAEYIFDHTIFQDNLVFVDFCEAMVKSTNPSLLSRAERTDAPRGEIHGYRTIAEIMRAFN 172
Query: 129 ------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP----ELVEDIGCWCD 178
+ + G +H + PGGV P + + + D
Sbjct: 173 PFEGEVYKEALKVSRITREMFCLMEGRHVHPSTLYPGGVGTMPQPTAFTDYLSRLMRVID 232
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGV 220
A+ D+ +G + F
Sbjct: 233 FVKKAVAMNDDVFDFFYEALPGYEEVGRRRTLLGCWGAFQDP 274
>gi|162149082|ref|YP_001603543.1| hypothetical protein GDI_3312 [Gluconacetobacter diazotrophicus PAl
5]
gi|161787659|emb|CAP57255.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
PAl 5]
Length = 459
Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 46/222 (20%), Positives = 70/222 (31%), Gaps = 11/222 (4%)
Query: 10 TINFGPQHPAAHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
+ GP H L L L G + V + +G HRG + AV R
Sbjct: 154 ILGIGPADGGHHTPGYLRLALGGRDTVGGAEWRLGYAHRGVMARLCGLDAPAAVRLAGRA 213
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
A + + A A+E + + RVL +EI R+ +HL +V A GA
Sbjct: 214 AAGASVAHQSALCRAIEAASDSMVGTGTERCRVLLAEIERVATHLHDVARTARAAGATAL 273
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS 188
RE +M R G R+ RP G E+ + +
Sbjct: 274 AAECEYLRESVMDLCGRMFGHRLLMDLVRPEGPDGHAGTGDAEEGAAIAAVARQVADLV- 332
Query: 189 DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWD 230
+ R +G + +G + G A
Sbjct: 333 ---------RGRMRAVGRCRDWPGLEARVAGRGVLGEHTARM 365
>gi|213586693|ref|ZP_03368519.1| uptake hydrogenase-1 large subunit [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
Length = 290
Score = 75.4 bits (184), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/216 (10%), Positives = 53/216 (24%), Gaps = 22/216 (10%)
Query: 173 IGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGV----MIRGSGAA 228
I D D + G G + G
Sbjct: 76 INGRFDEIHPVDLTAPDEIQEFVTHSWYTYGNGNNDKGLHPWDGLTEPQLVMGEHYKGTK 135
Query: 229 WDLRKSQPYECYSELDFDIPIGKHGDCY--DRYLVRMMEMRE-----------SVKIIRQ 275
+ + YS + G + RYL+ + + +K+ ++
Sbjct: 136 TFIEQVDESAKYSWIKSPRWKGHAMEVGPLARYLIGYHQNKPEFKEPVDQLLSVLKLPKE 195
Query: 276 CV----NRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYA 331
+ R + + + + + +S ++ + L+ +
Sbjct: 196 ALFSTLGRTAARALESVWAGNTLQYFFDRLMRNLKSGDTATANVTLWEPDTWPTSAKGVG 255
Query: 332 AVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
EAP+G G ++ K + P +
Sbjct: 256 FSEAPRGALGHWIKI-ENQKIDSYQCVVPTTWNAGP 290
>gi|55584170|sp|P80264|NDUS2_SOLTU RecName: Full=NADH-ubiquinone oxidoreductase 49 kDa subunit;
AltName: Full=Complex I-42.5 kDa; Short=CI-42.5kD;
AltName: Full=NADH dehydrogenase subunit 7
Length = 47
Score = 75.4 bits (184), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/42 (71%), Positives = 40/42 (95%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLL 45
++ ++FT+NFGPQHPAAHGVLRL+LE++GE+VER +PHIGLL
Sbjct: 6 RQIQNFTLNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLL 47
>gi|239927178|ref|ZP_04684131.1| hydrogen:quinone oxidoreductase [Streptomyces ghanaensis ATCC
14672]
gi|291435522|ref|ZP_06574912.1| Hydrogen:quinone oxidoreductase [Streptomyces ghanaensis ATCC
14672]
gi|291338417|gb|EFE65373.1| Hydrogen:quinone oxidoreductase [Streptomyces ghanaensis ATCC
14672]
Length = 598
Score = 75.4 bits (184), Expect = 2e-11, Method: Composition-based stats.
Identities = 25/253 (9%), Positives = 52/253 (20%), Gaps = 48/253 (18%)
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
D + + + +G + + + Y +
Sbjct: 325 YYEDWVNEDPFV--THDPLGNPVDMRHPWNQTTVPVPQKREFDDKYSWVMSPRWYDDRTG 382
Query: 246 DI-PIGKHGDCYDRYL----------VRMMEMRESVKIIRQCVNRLLGKNKVGPVSAS-- 292
+ P+ G R + SV+I +L +
Sbjct: 383 EHLPLDTGGGPLARLWSTALNGIVDTPYVKATGHSVRISLPKSEKLPETTLEWHIPKWSN 442
Query: 293 -----------DPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP-VGEVYAAVEAPKGEF 340
++ +M + E + VP EA +G
Sbjct: 443 TIERDRARPYFVAYAAAMALQFVEEAMGLVRAGQTKVFENFEVPDEAIGCGFHEAVRGVL 502
Query: 341 GVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQL-----------ADV 380
+L+ K P + E +G + D+
Sbjct: 503 SHHLVIK-DKKIANYHPYPPTPWNASPRDSYGTPGPYEDAVQGQPIFEENGPEDFKGVDI 561
Query: 381 SAILGSLDIVFGE 393
+ S D
Sbjct: 562 MRTVRSFDPCLPC 574
Score = 67.3 bits (163), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/247 (10%), Positives = 48/247 (19%), Gaps = 42/247 (17%)
Query: 45 LHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYS 104
L RG ++ K A R+ + N A + G++ P+ + I L
Sbjct: 55 LFRGYSVFMKGKDPRDAGFITSRICGICGDNHTTCSDYAQQMAYGVKPPMLAEHIVNLGE 114
Query: 105 EIGRILSHLLNVTTQAMDVGALTP------------------------------------ 128
+ H +
Sbjct: 115 AAEYMFDHTIFQDNLVFVDFCEAMVKATNPSVLARAERTDAPRGDIHGYRTIADIMRAFN 174
Query: 129 ------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+ + + G +H + PGGV P D
Sbjct: 175 PFEGEVYREALKISRITREMFCKMEGRHVHPSTLYPGGVGTMPEPTTFLDYLSRLMRILD 234
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ + F + G G + +
Sbjct: 235 FVKQAVAMNDDVFDFFYEALPGYEEVGRRRIMLGCWGAWQNPDVCDYRYETMNEWGKAMY 294
Query: 243 LDFDIPI 249
+ I +
Sbjct: 295 VTPGIIV 301
>gi|213027704|ref|ZP_03342151.1| formate hydrogenlyase subunit 5 [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
Length = 148
Score = 75.4 bits (184), Expect = 2e-11, Method: Composition-based stats.
Identities = 38/174 (21%), Positives = 64/174 (36%), Gaps = 31/174 (17%)
Query: 178 DSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPY 237
+ ++ D+L +QR V IG + E A + G M+R SG A D R P+
Sbjct: 5 QQMRRDVQELVDMLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPF 64
Query: 238 ECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIV 297
Y L ++ + D R VR+ E+ S+ +I ++ L G GP+ +
Sbjct: 65 VGYGLLPMEVHSEQGCDVISRLKVRINEVYTSLNMIDFGLDNLPG----GPLMVEGFTYI 120
Query: 298 PPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNK 351
P + A EAP+G+ + ++ K
Sbjct: 121 PHRFAL---------------------------GFAEAPRGDDIHWSMTGDNQK 147
>gi|118463710|ref|YP_881873.1| hydrogen:quinone oxidoreductase [Mycobacterium avium 104]
gi|118164997|gb|ABK65894.1| hydrogen:quinone oxidoreductase [Mycobacterium avium 104]
Length = 598
Score = 75.0 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 14/109 (12%), Positives = 26/109 (23%), Gaps = 21/109 (19%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K +E K + + G EA +G +++ K P +
Sbjct: 466 KALVEIRAGRTKTWEKFEVPDEGIGCGFTEAVRGVLSHHMVIR-DGKIANYHPYPPTPWN 524
Query: 365 L---------QAMEFLCKGHQL-----------ADVSAILGSLDIVFGE 393
E +G + D+ + S D
Sbjct: 525 ANPRDVYGTPGPYEDAVQGQPIFEENDRDNFKGIDIMRTVRSFDPCLPC 573
Score = 66.5 bits (161), Expect = 7e-09, Method: Composition-based stats.
Identities = 26/240 (10%), Positives = 50/240 (20%), Gaps = 47/240 (19%)
Query: 27 ILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEK 86
++ D V + RG ++ K A R+ + N
Sbjct: 38 KIDFDNREVVECH-STSSIFRGYSIFMKGKDPRDAHFITSRICGICGDNHCTCSVYTQNM 96
Query: 87 LLGIEIPIRGQLIRVLYSEIGRILSHLLNV----------------------------TT 118
G++ P + I L + H +
Sbjct: 97 AYGVQPPHLAEWITNLGEAAEYMFDHNIFQENLVGVDYCEKMVKETNPGVLAKAENTAAP 156
Query: 119 QAMDVGALTP--------------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQD 164
A G T + + G +H + PGGV
Sbjct: 157 HAGAHGYKTIADIMRSLNPFSGEFYREALQVSRMTREMFCLMEGRHVHPSTLYPGGVGTV 216
Query: 165 IP----PELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGV 220
+ + + + + + DL G + A +
Sbjct: 217 ATIQLMTDYMSRLMRYVEFMKKVVPMHDDLFDFFYEALPGYEKSGLRRTLLACWGSYQDP 276
>gi|255557518|ref|XP_002519789.1| NADH-plastoquinone oxidoreductase 49 kD subunit, putative [Ricinus
communis]
gi|223541028|gb|EEF42585.1| NADH-plastoquinone oxidoreductase 49 kD subunit, putative [Ricinus
communis]
Length = 117
Score = 75.0 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/105 (38%), Positives = 56/105 (53%)
Query: 180 FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC 239
F + + +R +G V E+A WG SG M+R SG WDLR+ YEC
Sbjct: 10 FFYIFRERELVYDLFEAATERVEGVGIVGAEEAINWGLSGPMLRASGVQWDLRQVDHYEC 69
Query: 240 YSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKN 284
Y E D+++ K GD RYLVR+ EM ES+KII++ + + G
Sbjct: 70 YDEFDWEVQWQKEGDSLARYLVRIDEMMESIKIIQRALEGIPGGP 114
>gi|312284566|gb|ADQ64092.1| bidirectional NAD(P) linked NiFe hydrogenase [uncultured
Synechocystis sp.]
gi|312284590|gb|ADQ64098.1| bidirectional NAD(P) linked NiFe hydrogenase [uncultured
Synechocystis sp.]
Length = 250
Score = 75.0 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/184 (15%), Positives = 54/184 (29%), Gaps = 21/184 (11%)
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG--- 124
+ + P++ A +K+L +++P G+ +R L + SH L+ +
Sbjct: 1 ICGICPVSHLLCAAKTGDKILAVQVPPAGEKLRRLMNLGQITQSHALSFFHLSSPDFLLG 60
Query: 125 ----------------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE 168
G R+ E ++HAA+ PGGV + E
Sbjct: 61 WDSDPAQRNVFGLIAADPDLARAGIRLRQFGQTIIELLGAKKIHAAWSVPGGVRSPLSEE 120
Query: 169 LVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAA 228
+ I L +L + + + + G G
Sbjct: 121 GRQWICDRLPESKETLYVALNLFKN--LLDKFQTEVAEFGKFPSLYLGLVGKNQEWEHYG 178
Query: 229 WDLR 232
LR
Sbjct: 179 GHLR 182
>gi|229490854|ref|ZP_04384689.1| nickel-dependent hydrogenase family protein [Rhodococcus
erythropolis SK121]
gi|229322244|gb|EEN88030.1| nickel-dependent hydrogenase family protein [Rhodococcus
erythropolis SK121]
Length = 597
Score = 75.0 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 14/109 (12%), Positives = 25/109 (22%), Gaps = 21/109 (19%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K +E K + G EA +G +++ K P +
Sbjct: 465 KALVEIRAGRTKTWESFEVPDEGIGCGFTEAVRGVLSHHMVIR-DGKIANYHPYPPTPWN 523
Query: 365 LQ---------AMEFLCKGHQL-----------ADVSAILGSLDIVFGE 393
E +G + D+ + S D
Sbjct: 524 ASPRDSYGTPGPYEDAVQGQPIFEENDRDHFKGIDIMRTVRSFDPCLPC 572
Score = 71.9 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/222 (12%), Positives = 46/222 (20%), Gaps = 46/222 (20%)
Query: 45 LHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYS 104
+ RG ++ K A R+ + N A G++ P G+ I L
Sbjct: 54 IFRGYSLFMKGKDPRDAHFITSRICGICGDNHATCSCYAQNMAYGVKPPHLGEWIVNLGE 113
Query: 105 EIGRILSHLLNV----------------------------TTQAMDVGALTP-------- 128
+ H + G T
Sbjct: 114 AAEYMFDHNIFQENLVAVDYCEKMVSETNPGVLAQAENTRCPHEEQHGYRTIADIMRTLN 173
Query: 129 ------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS--- 179
+ + G +H + PGGV EL+ D
Sbjct: 174 PFTGEFYREALQLSRSTREMFCLMEGRHVHPSTLYPGGVGTVATIELMTDYMSRLMRYVE 233
Query: 180 -FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGV 220
+ DL +G + F
Sbjct: 234 FMKKVVPMHDDLFDFFYQAMPGYEKVGLRRTLLGCWGSFQDP 275
>gi|226306138|ref|YP_002766098.1| NiFe hydrogenase large subunit [Rhodococcus erythropolis PR4]
gi|226185255|dbj|BAH33359.1| putative NiFe hydrogenase large subunit [Rhodococcus erythropolis
PR4]
Length = 597
Score = 75.0 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 14/109 (12%), Positives = 25/109 (22%), Gaps = 21/109 (19%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K +E K + G EA +G +++ K P +
Sbjct: 465 KALVEIRAGRTKTWESFEVPDEGIGCGFTEAVRGVLSHHMVIR-DGKIANYHPYPPTPWN 523
Query: 365 LQ---------AMEFLCKGHQL-----------ADVSAILGSLDIVFGE 393
E +G + D+ + S D
Sbjct: 524 ASPRDSYGTPGPYEDAVQGQPIFEENDRDHFKGIDIMRTVRSFDPCLPC 572
Score = 70.4 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 28/222 (12%), Positives = 46/222 (20%), Gaps = 46/222 (20%)
Query: 45 LHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYS 104
+ RG ++ K A R+ + N A G++ P G+ I L
Sbjct: 54 IFRGYSLFMKGKDPRDAHFITSRICGICGDNHATCSCYAQNMAYGVKPPHLGEWIVNLGE 113
Query: 105 EIGRILSHLLNV----------------------------TTQAMDVGALTP-------- 128
+ H + G T
Sbjct: 114 AAEYMFDHNIFQENLVAVDYCEKMVSETNPGVLAQAENTRCPHEEQHGYRTIADIMRTLN 173
Query: 129 ------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS--- 179
+ + G +H + PGGV EL+ D
Sbjct: 174 PFTGEFYREALQVSRSTREMFCLMEGRHVHPSTLYPGGVGTVATIELMTDYMSRLMRYVE 233
Query: 180 -FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGV 220
+ DL +G + F
Sbjct: 234 FMKKVVPMHDDLFDFFYEALPGYEKVGLRRTLLGCWGSFQDP 275
>gi|134099604|ref|YP_001105265.1| hydrogen:quinone oxidoreductase [Saccharopolyspora erythraea NRRL
2338]
gi|291005490|ref|ZP_06563463.1| hydrogen:quinone oxidoreductase [Saccharopolyspora erythraea NRRL
2338]
gi|133912227|emb|CAM02340.1| hydrogen:quinone oxidoreductase [Saccharopolyspora erythraea NRRL
2338]
Length = 596
Score = 74.6 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/280 (11%), Positives = 57/280 (20%), Gaps = 53/280 (18%)
Query: 20 AHGVLRLILELD--GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQE 77
G L + ++D V + RG ++ K A R+ + N
Sbjct: 26 IIGNLGIYTKVDFANNEVVECK-STSSIFRGYSVFMKGKDPRDAHFITSRICGICGDNHA 84
Query: 78 HAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA------------ 125
A G++ P G+ I L + H +
Sbjct: 85 VCSIYAQNMAYGVKTPPLGEWIINLGEAAEFMFDHTIFQDNMVFIDFCEKMVSETNPGVV 144
Query: 126 ------------------------------LTPPLWGFEEREKLMVFYERASGSRMHAAY 155
E G +H +
Sbjct: 145 RQAEQKAAPRGDIHGYRTIADIMRSFNPFEGEMYKAALEMSRVTREMCCLMEGRHVHPST 204
Query: 156 FRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS----DLLTGNRIFKQRNVNIGTVKLED 211
PGGV P++ D + D+ +G +
Sbjct: 205 LYPGGVGTVATPQVFTDYQVRLVRVLDFIKRAVAMNDDVFDFFYEALPGYEEVGRRRTLL 264
Query: 212 AWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGK 251
F +D R + + I +
Sbjct: 265 GCWGCFQDP----EVVDYDYRNMTEWGRSMFVTPGIVVDN 300
Score = 73.8 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 14/125 (11%), Positives = 29/125 (23%), Gaps = 22/125 (17%)
Query: 290 SASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP-VGEVYAAVEAPKGEFGVYLISDG 348
+ + R++ + ++VP EA +G +L+
Sbjct: 449 MYFVAYAAGMAQYFLDRALAEVRSGNTKVFADFNVPDEAIGVGFHEAVRGVLSHHLVIR- 507
Query: 349 GNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQL-----------ADVSAILGSLD 388
K P + E +G + D+ + S D
Sbjct: 508 DGKIANYHPYPPTPWNASPRDFYGTPGPYEDAVQGQPIFEENGPDDFKGIDIMRTVRSFD 567
Query: 389 IVFGE 393
Sbjct: 568 PCLPC 572
>gi|118472539|ref|YP_887053.1| hydrogen:quinone oxidoreductase [Mycobacterium smegmatis str. MC2
155]
gi|118173826|gb|ABK74722.1| hydrogen:quinone oxidoreductase [Mycobacterium smegmatis str. MC2
155]
Length = 598
Score = 74.6 bits (182), Expect = 3e-11, Method: Composition-based stats.
Identities = 14/109 (12%), Positives = 25/109 (22%), Gaps = 21/109 (19%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K E K + + G EA +G +++ K P +
Sbjct: 466 KALTEIRAGRTKTWEKFEVPDEGIGCGFTEAVRGVLSHHMVIR-DGKIANYHPYPPTPWN 524
Query: 365 L---------QAMEFLCKGHQL-----------ADVSAILGSLDIVFGE 393
E +G + D+ + S D
Sbjct: 525 ANPRDSYGTPGPYEDAVQGQPIFEENDREHFKGIDIMRTVRSFDPCLPC 573
Score = 71.5 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/251 (11%), Positives = 53/251 (21%), Gaps = 50/251 (19%)
Query: 45 LHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYS 104
+ RG ++ K A R+ + N A G++ P + I L
Sbjct: 55 IFRGYSLFMKGKDPRDAHFITSRICGICGDNHATCSCYAQNMAYGVQPPHVAEWIVNLGE 114
Query: 105 EIGRILSHLLNV----------------------------TTQAMDVGALTP-------- 128
+ H + A G T
Sbjct: 115 AAEYMFDHNIFQENLVGVDFCEKMVSETNPSVLAKAENTEAPHAGMHGYRTIADIMRALN 174
Query: 129 ------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS--- 179
+ + G +H + PGGV +L+ D
Sbjct: 175 PFTGEFYREALQVSRWTREMFCLMEGRHVHPSTLYPGGVGTVATIQLMTDYMTRLMRYVE 234
Query: 180 -FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
+ DL +G + F + R + +
Sbjct: 235 FMKKVVPMHDDLFDFFYEALPGYEQVGLRRTLLGCWGSFQDP----EHCNFSYRDMEAWG 290
Query: 239 CYSELDFDIPI 249
+ + +
Sbjct: 291 RKMFVTPGVVV 301
>gi|108799110|ref|YP_639307.1| hydrogen:quinone oxidoreductase [Mycobacterium sp. MCS]
gi|119868225|ref|YP_938177.1| hydrogen:quinone oxidoreductase [Mycobacterium sp. KMS]
gi|108769529|gb|ABG08251.1| Hydrogen:quinone oxidoreductase [Mycobacterium sp. MCS]
gi|119694314|gb|ABL91387.1| Hydrogen:quinone oxidoreductase [Mycobacterium sp. KMS]
Length = 598
Score = 74.2 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 14/124 (11%), Positives = 29/124 (23%), Gaps = 22/124 (17%)
Query: 291 ASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP-VGEVYAAVEAPKGEFGVYLISDGG 349
++++ + E + VP G EA +G +++
Sbjct: 451 YFQAYAAACALHFAEKALTEIRAGRTKTWERFEVPDEGIGCGFTEAVRGVLSHHMVIR-D 509
Query: 350 NKPYRCKIRAPGYAHL---------QAMEFLCKGHQL-----------ADVSAILGSLDI 389
K P + E +G + D+ + S D
Sbjct: 510 GKIANYHPYPPTPWNANPRDSYGTPGPYEDAVQGQPIFEENGREKFKGIDIMRTVRSFDP 569
Query: 390 VFGE 393
Sbjct: 570 CLPC 573
Score = 70.0 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 21/240 (8%), Positives = 48/240 (20%), Gaps = 47/240 (19%)
Query: 27 ILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEK 86
++ + V + RG ++ K A R+ + N
Sbjct: 38 KVDFENREVVECH-STSSIFRGYSIFMKGKDPRDAHFITSRICGICGDNHATCSCYTQNM 96
Query: 87 LLGIEIPIRGQLIRVLYSEIGRILSHLLN----------------------------VTT 118
G++ P + + L + H +
Sbjct: 97 AYGVQPPHLAEWLVNLGEAAEYMFDHNIFQENLVGVDFCEKMVAETNPSVLAKAENAQAP 156
Query: 119 QAMDVGALTP--------------PLWGFEEREKLMVFYERASGSRMHAAYFRP----GG 160
A G T + + G +H + P
Sbjct: 157 HADMHGYRTIADIMRALNPFTGEFYREALQVSRYTREMFCLMEGRHVHPSTLYPGGIGTT 216
Query: 161 VHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGV 220
+ + + + + + + DL +G + F
Sbjct: 217 ATVQLMTDYMTRLMRYVEFMKKVVPMHDDLFDFFYEALPGYDQVGLRRTLLGCWGSFQDP 276
>gi|213610001|ref|ZP_03369827.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
Length = 143
Score = 74.2 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 14/87 (16%), Positives = 24/87 (27%), Gaps = 16/87 (18%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQ 366
+ + EAP+G G + K + P + +
Sbjct: 58 EKWEPASWPQHCRGIGFTEAPRGALGHWASIR-DQKIELYQCVVPTTWNASPRDPKKQIG 116
Query: 367 AMEFLCKGHQLA------DVSAILGSL 387
A E G Q+A ++ L S
Sbjct: 117 AYEAALMGTQMAIPDQPLEILRTLHSF 143
>gi|126434716|ref|YP_001070407.1| hydrogen:quinone oxidoreductase [Mycobacterium sp. JLS]
gi|126234516|gb|ABN97916.1| Hydrogen:quinone oxidoreductase [Mycobacterium sp. JLS]
Length = 598
Score = 74.2 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 14/124 (11%), Positives = 29/124 (23%), Gaps = 22/124 (17%)
Query: 291 ASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP-VGEVYAAVEAPKGEFGVYLISDGG 349
++++ + E + VP G EA +G +++
Sbjct: 451 YFQAYAAACALHFAEKALTEIRAGRTKTWERFEVPDEGIGCGFTEAVRGVLSHHMVIR-D 509
Query: 350 NKPYRCKIRAPGYAHL---------QAMEFLCKGHQL-----------ADVSAILGSLDI 389
K P + E +G + D+ + S D
Sbjct: 510 GKIANYHPYPPTPWNANPRDSYGTPGPYEDAVQGQPIFEENGREKFKGIDIMRTVRSFDP 569
Query: 390 VFGE 393
Sbjct: 570 CLPC 573
Score = 69.6 bits (169), Expect = 7e-10, Method: Composition-based stats.
Identities = 21/240 (8%), Positives = 48/240 (20%), Gaps = 47/240 (19%)
Query: 27 ILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEK 86
++ + V + RG ++ K A R+ + N
Sbjct: 38 KVDFENREVVECH-STSSIFRGYSIFMKGKDPRDAHFITSRICGICGDNHATCSCYTQNM 96
Query: 87 LLGIEIPIRGQLIRVLYSEIGRILSHLLN----------------------------VTT 118
G++ P + + L + H +
Sbjct: 97 AYGVQPPHLAEWLVNLGEAAEYMFDHNIFQENLVGVDYCEKMVAETNPSVLAKAENAQAP 156
Query: 119 QAMDVGALTP--------------PLWGFEEREKLMVFYERASGSRMHAAYFRP----GG 160
A G T + + G +H + P
Sbjct: 157 HADMHGYRTIAEIMRALNPFTGEFYREALQVSRWTREMFCLMEGRHVHPSTLYPGGIGTT 216
Query: 161 VHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGV 220
+ + + + + + + DL +G + F
Sbjct: 217 ATVQLMTDYMTRLMRYVEFMKKVVPMHDDLFDFFYEALPGYDQVGLRRTLLGCWGSFQDP 276
>gi|269928405|ref|YP_003320726.1| nickel-dependent hydrogenase large subunit [Sphaerobacter
thermophilus DSM 20745]
gi|269787762|gb|ACZ39904.1| nickel-dependent hydrogenase large subunit [Sphaerobacter
thermophilus DSM 20745]
Length = 595
Score = 74.2 bits (181), Expect = 4e-11, Method: Composition-based stats.
Identities = 31/260 (11%), Positives = 56/260 (21%), Gaps = 49/260 (18%)
Query: 27 ILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEK 86
++ D V + RG ++ K A R+ + N A
Sbjct: 34 KIDFDNREVVECK-STSSIFRGYSVFMKGKDPRDAHFITSRICGICGDNHATCSIYAQNM 92
Query: 87 LLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA--------------------- 125
GI++P + I L + H +
Sbjct: 93 AYGIQMPPLAEWIVNLGEAAEYMFDHTIFQDNLVFVDFCEQMVKETNPRLLERAESTPAP 152
Query: 126 ---------------------LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQD 164
+ + + G +H + PGGV
Sbjct: 153 HADIHGKRTIADIMRAFNPFTGDMYVEALQMSRLTREMFCLMEGRHVHPSTLYPGGVGTM 212
Query: 165 IPPELVEDIGCWCDSFPSALNDIS----DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGV 220
P+L D F + + DL +G ++ F
Sbjct: 213 PSPQLFSDYLVRLMRFLDFVKRLVPMNDDLFDFFYEAMPGYEEVGQRRILLGCWGSFMNP 272
Query: 221 MIRGSGAAWDLRKSQPYECY 240
+ +D Y
Sbjct: 273 --EFADYRYDHMTQWGRAMY 290
Score = 71.5 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 14/111 (12%), Positives = 31/111 (27%), Gaps = 22/111 (19%)
Query: 304 MKRSMESLIHHFKLYTEGYHVP-VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
++++M+ + + + VP EA +G +L+ K P
Sbjct: 462 LEQAMDHVRRGDLRVFQEFEVPDEAIGCGFHEAVRGVLSHHLVIR-DGKIANYHPYPPTP 520
Query: 363 AHLQ---------AMEFLCKGHQL-----------ADVSAILGSLDIVFGE 393
+ E +G ++ D+ + S D
Sbjct: 521 WNASPRDSYGTPGPYEDAVQGLRIFEENGPENFKGIDIMRTVRSFDPCLPC 571
>gi|296171556|ref|ZP_06852820.1| hydrogen:quinone oxidoreductase [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295894118|gb|EFG73879.1| hydrogen:quinone oxidoreductase [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length = 599
Score = 73.8 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 15/111 (13%), Positives = 29/111 (26%), Gaps = 22/111 (19%)
Query: 304 MKRSMESLIHHFKLYTEGYHVP-VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
++++E + E + VP EA +G +++ K P
Sbjct: 465 AEKALEEIRAGRTKTWEKFEVPDEAIGCGFTEAVRGVLSHHMVIR-DGKIANYHPYPPTP 523
Query: 363 AHL---------QAMEFLCKGHQL-----------ADVSAILGSLDIVFGE 393
+ E +G + DV + S D
Sbjct: 524 WNANPRDSYGTPGPYEDAVQGQPIFEENSRENFKGIDVMRTVRSFDPCLPC 574
Score = 69.2 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/222 (10%), Positives = 43/222 (19%), Gaps = 46/222 (20%)
Query: 45 LHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYS 104
+ RG ++ K A R+ + N G++ P G+ I L
Sbjct: 55 IFRGYSIFMKGKDPRDAHFITSRICGICGDNHATCSCYTQNMAYGVKPPHLGEWIVNLGE 114
Query: 105 EIGRILSHLLNVTTQAMDVGALTP------------------------------------ 128
+ H +
Sbjct: 115 AAEYMFDHNIFQENLVGVDFCEKMVSETNPSVLALAEKTPAPQADAHGYRTIADIMRSLN 174
Query: 129 ------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDS--- 179
+ + G +H + PGGV +L+ D
Sbjct: 175 PFSGEFYREALQVSRYTREMFCLMEGRHVHPSTLYPGGVGTVATVQLMTDYMTRLMRYVE 234
Query: 180 -FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGV 220
+ DL +G + F
Sbjct: 235 FMKKVVPMHDDLFDFFYTALPGYEKVGLRRTLLGCWGSFQDP 276
>gi|213024151|ref|ZP_03338598.1| [Ni/Fe] hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
Length = 69
Score = 73.8 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 32 GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIE 91
++ G + RG E +++ + A + +R+ V AVE LGI
Sbjct: 2 NNVITNA-VSTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGTHALTSIRAVENALGIA 60
Query: 92 IPIRGQLIR 100
IP IR
Sbjct: 61 IPDNANCIR 69
>gi|290962972|ref|YP_003494154.1| hydrogenase-1 large subunit [Streptomyces scabiei 87.22]
gi|260652498|emb|CBG75631.1| putative hydrogenase-1 large subunit [Streptomyces scabiei 87.22]
Length = 594
Score = 73.8 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 16/135 (11%), Positives = 32/135 (23%), Gaps = 22/135 (16%)
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L +N+ + V A+ K E + + + G EA +G
Sbjct: 436 NALERNRARTYFQAYAAAVALHCAE-KGLAEVRAGRTQTWEKFEVPDEGIGVGFTEAVRG 494
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQL-----------A 378
+++ K P + E + +
Sbjct: 495 VLSHHMVIR-DGKIANYHPYPPTPWNASTRDTFGTPGPYEDAVQNTPIFEENTPENFKGI 553
Query: 379 DVSAILGSLDIVFGE 393
D+ + S D
Sbjct: 554 DIMRAVRSFDPCLPC 568
Score = 72.3 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 36/308 (11%), Positives = 67/308 (21%), Gaps = 49/308 (15%)
Query: 45 LHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYS 104
+ RG + K A R+ + N A G++ P G+ I L
Sbjct: 51 VFRGYSVFMRGKDPRDAHFITSRICGICGDNHATCSVYAQNMAYGVKPPHLGEWIINLGE 110
Query: 105 EIGRILSHLLNV----------------------------TTQAMDVGALTP-------- 128
+ H + A + G T
Sbjct: 111 SAEYMFDHNIFQENLVGVDYCEKMVKETNPGVLELAERTEAPHAAEHGYRTIADIMRSLN 170
Query: 129 ------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+ + G +H + PGGV +L D +
Sbjct: 171 PLEGEFYREALQVSRYTREMFCLMEGRHVHPSTLYPGGVGTIASVQLFTDYMSRLMRYVE 230
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ + L F + G G + + +
Sbjct: 231 FMKRVVPLHDDLFDFFYEALPGYEEVGRRRVMLGCWGALNDPEYCDFTYANMTDWGRKMF 290
Query: 243 LDFDIPIGKHGDCYDRYLVRMME-------MRESVKIIRQCVNRLLGKNKVGPVSASDPK 295
+ + + D + + E + Q V N V P +
Sbjct: 291 VTPGVVVDGKLVTNDLTEINLGIRILLGSSYYEDWQGQEQFVTHDPLGNPVDPRHPWNQH 350
Query: 296 IVPPKRAD 303
+P +
Sbjct: 351 TIPAPQKR 358
>gi|312284568|gb|ADQ64093.1| bidirectional NAD(P) linked NiFe hydrogenase [uncultured
Microcystis sp.]
Length = 263
Score = 73.8 bits (180), Expect = 5e-11, Method: Composition-based stats.
Identities = 30/184 (16%), Positives = 54/184 (29%), Gaps = 21/184 (11%)
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG--- 124
+ + P++ A +K+L ++IP G+ +R L + SH L+ +
Sbjct: 1 ICGICPVSHLLCAAKTGDKILAVQIPPAGEKLRRLMNLGQLTQSHALSFFHLSSPDFLLG 60
Query: 125 ----------------ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE 168
G R+ E ++H A+ PGGV + E
Sbjct: 61 WESDPAKRNVFGLIAADPDLARAGIRLRQFGQKVIELLGAKKIHPAWSVPGGVRSPLSEE 120
Query: 169 LVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAA 228
+ I + L +L G + I + G G
Sbjct: 121 GRQWIKERLPESKATLYTALNLFKG--LLDNLTTEIAAFGNFPSLFMGLVGKRDEWEHYG 178
Query: 229 WDLR 232
+R
Sbjct: 179 GHIR 182
>gi|254392509|ref|ZP_05007688.1| hydrogen:quinone oxidoreductase [Streptomyces clavuligerus ATCC
27064]
gi|294811168|ref|ZP_06769811.1| Hydrogen:quinone oxidoreductase [Streptomyces clavuligerus ATCC
27064]
gi|326439716|ref|ZP_08214450.1| cytochrome C3-like [NiFe] hydrogenase large subunit [Streptomyces
clavuligerus ATCC 27064]
gi|197706175|gb|EDY51987.1| hydrogen:quinone oxidoreductase [Streptomyces clavuligerus ATCC
27064]
gi|294323767|gb|EFG05410.1| Hydrogen:quinone oxidoreductase [Streptomyces clavuligerus ATCC
27064]
Length = 594
Score = 73.4 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 38/308 (12%), Positives = 69/308 (22%), Gaps = 49/308 (15%)
Query: 45 LHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYS 104
+ RG + K A R+ + N A G++ P G+ I L
Sbjct: 51 VFRGYSVFMRGKDPRDAHFITSRICGICGDNHATCSVYAQNMAYGVKPPHLGEWIINLGE 110
Query: 105 EIGRILSHLLNV----------------------------TTQAMDVGALTP-------- 128
+ H + A D G T
Sbjct: 111 AAEYMFDHNIFQENLVGVDYCEKMVKETNPGVLEQAERTEAPHAGDHGYRTIADIMRALN 170
Query: 129 ------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+ + G +H + PGGV +L D +
Sbjct: 171 PIEGEFYREALQVSRYTREMFCLMEGRHVHPSTLYPGGVGTVATVQLFTDYLTRLMRYVE 230
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ + L F + G G + + R+ +
Sbjct: 231 FMKKVVPLHDDLFDFFYEALPGYEEVGRRRVLLGCWGSLNDPDHCDFTYRRMTDWGRKMF 290
Query: 243 LDFDIPIGKHGDCYDRYLVRMME-------MRESVKIIRQCVNRLLGKNKVGPVSASDPK 295
+ + + D + + E + V R N V P +
Sbjct: 291 VTPGVVVDGKLVTNDLTEINLGIRILLGSSYYEDWEGRDLFVARDPLGNPVDPRHPWNQH 350
Query: 296 IVPPKRAD 303
+P +
Sbjct: 351 TIPAPQKR 358
Score = 68.4 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 13/110 (11%), Positives = 28/110 (25%), Gaps = 22/110 (20%)
Query: 305 KRSMESLIHHFKLYTEGYHVP-VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
++++E + E + VP EA +G +++ K P
Sbjct: 460 EKALEEVRAGRHKTWERFEVPDESIGCGFTEAVRGVLSHHMVIR-DGKIANYHPYPPTPW 518
Query: 364 HLQ---------AMEFLCKGHQL-----------ADVSAILGSLDIVFGE 393
+ E + + D+ + S D
Sbjct: 519 NASVRDSYGTPGPYEDAVQNTPIFEENPPENFKGIDIMRAVRSFDPCLPC 568
>gi|116625607|ref|YP_827763.1| hydrogen:quinone oxidoreductase [Candidatus Solibacter usitatus
Ellin6076]
gi|116228769|gb|ABJ87478.1| Hydrogen:quinone oxidoreductase [Candidatus Solibacter usitatus
Ellin6076]
Length = 598
Score = 73.4 bits (179), Expect = 6e-11, Method: Composition-based stats.
Identities = 27/249 (10%), Positives = 54/249 (21%), Gaps = 12/249 (4%)
Query: 45 LHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYS 104
+ RG ++ K A R+ + N A GI P + I L
Sbjct: 55 IFRGYSIFMKGKDPRDAHFITSRICGICGDNHATCATYAQNMAFGIRPPDMAEWIVNLGE 114
Query: 105 EIGRILSHLLNVTTQAMDVGALTPPLW----GFEEREKLMVFYERASGSRMHAAYFRPGG 160
+ H + ++ E+ + G R A R
Sbjct: 115 AAEYMFDHNIFQDNLVGVDFCEQMVKETNPGVLDKAERSDCPHAEQHGYRKIADIMRALN 174
Query: 161 VHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGV 220
+ L R + G V +
Sbjct: 175 PFTGEFYREALQMSRMTREMFC--------LMEGRHVHPSTLYPGGVGTVPTVQLFTDYL 226
Query: 221 MIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRL 280
+ + R ++ + ++ G R L+ + ++ +
Sbjct: 227 VRLMKYVEFMKRVVPLHDDLFDFFYEALPGYEKVGQRRVLLGCWGSWNNPEVCDYTYKNM 286
Query: 281 LGKNKVGPV 289
V
Sbjct: 287 NAWGNAMYV 295
Score = 70.0 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 15/112 (13%), Positives = 27/112 (24%), Gaps = 24/112 (21%)
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVY--AAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
M++ M L + VP E EA +G +++ K P
Sbjct: 465 MEKGMADLHAGKTKTWTDFKVPE-EAISCGFHEAVRGVLSHHVVIR-NGKIANYHPYPPT 522
Query: 362 YAHLQA---------MEFLCKGHQL-----------ADVSAILGSLDIVFGE 393
+ E + + D+ + S D
Sbjct: 523 PWNASPRDSNGTPGPYEDAVQNTPIFEENGPENFRGIDIMRAVRSFDPCLPC 574
>gi|261883794|ref|ZP_06007833.1| quinone-reactive Ni/Fe-hydrogenase large chain [Campylobacter fetus
subsp. venerealis str. Azul-94]
Length = 214
Score = 73.4 bits (179), Expect = 6e-11, Method: Composition-based stats.
Identities = 21/198 (10%), Positives = 38/198 (19%), Gaps = 47/198 (23%)
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPK----- 295
D + + + + I +N G V PV K
Sbjct: 6 EMEDTKVFDIAGKYSWIKAPRYDSVPMQVGPIANIVINYAKGNKNVVPVVDKFLKDTGLP 65
Query: 296 --------------------IVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEV----YA 331
+ +E+L + E
Sbjct: 66 LSAVFSTLGRTACRMIEATIVANNALKAFNNLIENLKVDQSTCAKYVIDNNKEYKERFIG 125
Query: 332 AVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA---------MEFLCKGHQLAD--- 379
V P+G + + P + E G ++AD
Sbjct: 126 NV--PRGMQSHWCRIK-NGVIENWQAVVPSTWNASPKDSKGQMASYEACLVGLKIADLKQ 182
Query: 380 ---VSAILGSLDIVFGEV 394
+ + S D
Sbjct: 183 PLEIIRKIHSYDPCIACA 200
>gi|254386138|ref|ZP_05001451.1| ni-dependent hydrogenase large subunit [Streptomyces sp. Mg1]
gi|194344996|gb|EDX25962.1| ni-dependent hydrogenase large subunit [Streptomyces sp. Mg1]
Length = 594
Score = 73.4 bits (179), Expect = 6e-11, Method: Composition-based stats.
Identities = 15/135 (11%), Positives = 32/135 (23%), Gaps = 22/135 (16%)
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L +N+ + + A+ K E + + + G EA +G
Sbjct: 436 NALERNRARTYFQAYAAAIALHCAE-KGLAEVRAGRTQTWEKFEVPDEGLGVGFTEAVRG 494
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQL-----------A 378
+++ K P + E + +
Sbjct: 495 VLSHHMVIR-DGKIANYHPYPPTPWNASTRDTFGTPGPYEDAVQNTPIFEENTPENFKGI 553
Query: 379 DVSAILGSLDIVFGE 393
D+ + S D
Sbjct: 554 DIMRAVRSFDPCLPC 568
Score = 67.3 bits (163), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/222 (11%), Positives = 50/222 (22%), Gaps = 46/222 (20%)
Query: 45 LHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYS 104
+ RG + K A R+ + N A G++ P + I L
Sbjct: 51 VFRGYSVFMRGKDPRDAHFITSRICGICGDNHATCSVYAQNMAYGVKPPHLAEWIINLGE 110
Query: 105 EIGRILSHLLNV----------------------------TTQAMDVGALTP-------- 128
+ H + + A + G T
Sbjct: 111 SAEYMFDHNIFQENLVGVDYCEKMVRETNPGVLELAERTPSPHAGEHGYKTIADIMRSLN 170
Query: 129 ------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIP----PELVEDIGCWCD 178
+ + G +H + PGGV + + + +C+
Sbjct: 171 PIEGEFYREALQVSRYTREMFCLMEGRHVHPSTLYPGGVGTIASVQLFTDYMSRLMRYCE 230
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGV 220
+ DL +G ++ +
Sbjct: 231 FMKRVVPLHDDLFDFFYEALPGYEEVGRRRVLLGCWGALNDP 272
>gi|320532544|ref|ZP_08033353.1| conserved domain protein [Actinomyces sp. oral taxon 171 str.
F0337]
gi|320135238|gb|EFW27377.1| conserved domain protein [Actinomyces sp. oral taxon 171 str.
F0337]
Length = 47
Score = 72.3 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 350 NKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+PYR R P +++LQ++ + +G +AD+ L S+D V G VDR
Sbjct: 1 TRPYRVHFRDPSFSNLQSLAMMGEGGMIADLVPTLASIDPVLGGVDR 47
>gi|240171479|ref|ZP_04750138.1| nickel/iron-hydrogenase I large subunit, HyaB [Mycobacterium
kansasii ATCC 12478]
Length = 599
Score = 72.3 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 14/124 (11%), Positives = 28/124 (22%), Gaps = 22/124 (17%)
Query: 291 ASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP-VGEVYAAVEAPKGEFGVYLISDGG 349
++++ + E + VP EA +G +++
Sbjct: 452 YFQAYAAACALHFAEKALTEIRAGRTKTWERFEVPDEAIGCGFTEAVRGVLSHHMVIR-D 510
Query: 350 NKPYRCKIRAPGYAHL---------QAMEFLCKGHQL-----------ADVSAILGSLDI 389
K P + E +G + DV + S D
Sbjct: 511 GKIANYHPYPPTPWNANPRDSYGTPGPYEDAVQGQPIFEENSRENFKGIDVMRTVRSFDP 570
Query: 390 VFGE 393
Sbjct: 571 CLPC 574
Score = 68.8 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/222 (9%), Positives = 45/222 (20%), Gaps = 46/222 (20%)
Query: 45 LHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYS 104
+ RG ++ K A R+ + N G++ P G+ + L
Sbjct: 55 IFRGYSIFMKGKDPRDAHFITSRICGICGDNHATCSCYTQNMAYGVKPPHLGEWLINLGE 114
Query: 105 EIGRILSHLLNV----------------------------TTQAMDVGALTP-------- 128
+ H + A G T
Sbjct: 115 AAEYMFDHNIFQENLVGVDFCEKMVAETNPGVLAKAEKTAAPHADAHGYKTIAEIMRSLN 174
Query: 129 ------PLWGFEEREKLMVFYERASGSRMHAAYFRP----GGVHQDIPPELVEDIGCWCD 178
+ + G +H + P + + + + + +
Sbjct: 175 PFSGEFYREALQVSRWTREMFCLMEGRHVHPSTLYPGGIGTTATVQLMTDYMTRLMRYVE 234
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGV 220
+ DL +G + F
Sbjct: 235 FMKKVVPMHDDLFDFFYDALPGYEKVGLRRTLLGCWGSFQDP 276
>gi|29833909|ref|NP_828543.1| cytochrome C3-like [NiFe] hydrogenase large subunit [Streptomyces
avermitilis MA-4680]
gi|15823996|dbj|BAB69212.1| cytochrome c3-like hydrogenase [Streptomyces avermitilis]
gi|29611034|dbj|BAC75078.1| putative cytochrome C3-like [NiFe] hydrogenase large subunit
[Streptomyces avermitilis MA-4680]
Length = 594
Score = 71.9 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 13/124 (10%), Positives = 27/124 (21%), Gaps = 22/124 (17%)
Query: 291 ASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP-VGEVYAAVEAPKGEFGVYLISDGG 349
++ +E + E + VP EA +G +++
Sbjct: 446 YFQAYTAAVALHFAEKGLEEVRAGRTQTWEKFEVPDESIGVGFTEAVRGVLSHHMVIR-D 504
Query: 350 NKPYRCKIRAPGYAHLQ---------AMEFLCKGHQL-----------ADVSAILGSLDI 389
K P + E + + D+ + S D
Sbjct: 505 GKIANYHPYPPTPWNASTRDSFGTPGPYEDAVQNTPIFEENTPENFKGIDIMRAVRSFDP 564
Query: 390 VFGE 393
Sbjct: 565 CLPC 568
Score = 70.7 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 38/308 (12%), Positives = 67/308 (21%), Gaps = 49/308 (15%)
Query: 45 LHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYS 104
+ RG + K A R+ + N A G++ P G+ I L
Sbjct: 51 VFRGYSVFMRGKDPRDAHFITSRICGICGDNHATCSVYAQNMAYGVKPPHLGEWIINLGE 110
Query: 105 EIGRILSHLLNV----------------------------TTQAMDVGALTP-------- 128
+ H + A D G T
Sbjct: 111 SAEYMFDHNIFQENLVGVDYCEKMVKETNPGVLELAERTEAPHAGDHGYRTIADIMRSLN 170
Query: 129 ------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+ + G +H + PGGV +L D +
Sbjct: 171 PIEGDFYREALQVSRYTREMFCLMEGRHVHPSTLYPGGVGTIASVQLFTDYLSRLMRYVE 230
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ + L F + G G + + +
Sbjct: 231 FMKRVVPLHDDLFDFFYEALPGYEEVGRRRVLLGCWGALNDPEYCDFTYANMTDWGRRMF 290
Query: 243 LDFDIPIGKHGDCYDRYLVRMME-------MRESVKIIRQCVNRLLGKNKVGPVSASDPK 295
+ I + D + + E + Q V N V P +
Sbjct: 291 VTPGIIVDGKLVTNDLTEINLGIRILLGSSYYEDWQGQEQFVTHDPLGNPVDPRHPWNQH 350
Query: 296 IVPPKRAD 303
+P +
Sbjct: 351 TIPAPQKR 358
>gi|221633850|ref|YP_002523076.1| nickel-dependent hydrogenase large subunit [Thermomicrobium roseum
DSM 5159]
gi|221156913|gb|ACM06040.1| nickel-dependent hydrogenase, large subunit [Thermomicrobium roseum
DSM 5159]
Length = 588
Score = 71.9 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 35/319 (10%), Positives = 63/319 (19%), Gaps = 50/319 (15%)
Query: 34 IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIP 93
V + RG + K A R+ + N G+ P
Sbjct: 37 RVVEC-YSTSSIFRGYSVFMRGKDPRDAHFITSRICGICGDNHATCSVYNQNMAYGVAPP 95
Query: 94 IRGQLIRVLYSEIGRILSHLLNV----------------------------TTQAMDVGA 125
G+ I L + H + A G
Sbjct: 96 PLGEWIINLGEAAEYMFDHNIFQENLVGVDFCERMVRETNPSVWEKAQQTAAPHAHLHGY 155
Query: 126 LTP--------------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
T + + G +H + PGGV +L
Sbjct: 156 RTIADIMRALNPLEGEFYRQALQMSRMTREMFCLMEGRHVHPSTLYPGGVGTVPTVQLFT 215
Query: 172 DIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDL 231
D + + L F + + G G +
Sbjct: 216 DYLTRLMRYIEFMKKAVPLHDDLFDFFYQALPGYEEVGRRRILLGCWGAFNDPEYCDFKY 275
Query: 232 RKSQPYECYSELDFDIPIGKHGDCYDRYLVRMME-------MRESVKIIRQCVNRLLGKN 284
+ + + + D + + E + V R N
Sbjct: 276 EHMTEWGRRMFVTPGVIVDGKLVTNDLVQINLGIRILLGSSYYEDWEDQEMFVTRDPLGN 335
Query: 285 KVGPVSASDPKIVPPKRAD 303
V + +P +
Sbjct: 336 PVDRRHPWNVHTIPKPQKR 354
Score = 68.4 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 12/109 (11%), Positives = 26/109 (23%), Gaps = 21/109 (19%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K E + +++T EA +G +++ K + P +
Sbjct: 457 KALDELRRGNTQVWTPFEVPKEAISCGWTEAVRGVLSHHMVIR-DGKIANYQPWPPTPWN 515
Query: 365 L---------QAMEFLCKGHQL-----------ADVSAILGSLDIVFGE 393
E + + D+ + S D
Sbjct: 516 ANPRDIYGTPGPYEDAVQNTPIFEENGPDNFKGIDIMRTVRSFDPCLPC 564
>gi|223934712|ref|ZP_03626632.1| Hydrogen:quinone oxidoreductase [bacterium Ellin514]
gi|223896667|gb|EEF63108.1| Hydrogen:quinone oxidoreductase [bacterium Ellin514]
Length = 604
Score = 71.9 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/240 (9%), Positives = 50/240 (20%), Gaps = 47/240 (19%)
Query: 27 ILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEK 86
++ + + V + RG ++ K R+ + N A
Sbjct: 40 KIDFENKKVVECHATS-SIFRGYSIFMQNKDPRDTHFITSRICGICGDNHATCSVYAQNM 98
Query: 87 LLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP------------------ 128
GI+ P + I L + H +
Sbjct: 99 AYGIKPPPLAEWIINLGEAAEYMFDHCIYQDNLVGVDFCEMMVRETNPGVWEKAKVTAAP 158
Query: 129 ------------------------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQD 164
+ + G +H + PGGV
Sbjct: 159 HAKDHGYRTIGEIMTALNPFEGEFYRKTLQMSRVTREMFCLMEGRHVHPSTLYPGGVGTV 218
Query: 165 IP----PELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGV 220
+ + + + + + + DL +G ++ F
Sbjct: 219 PSIQTFTDYLTRLMNYVEFMKAVVPLHDDLFDFFYEALPGYEKVGQRRVLLGCWGSFQDP 278
Score = 69.6 bits (169), Expect = 8e-10, Method: Composition-based stats.
Identities = 15/146 (10%), Positives = 36/146 (24%), Gaps = 24/146 (16%)
Query: 270 VKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEV 329
V++ + + S ++++M+ ++ + VP E
Sbjct: 434 VELEWKVPKWSNAIERDRARSYFQAYAAAVALYCVEQAMKEVLAGRTQTFTPFKVPE-EA 492
Query: 330 Y--AAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA---------MEFLCKGHQL- 377
EA +G +++ K P + E + +
Sbjct: 493 ISCGFHEAVRGVLSHHMVIK-NRKVANYHPYPPTPWNASPRDSYGTPGPYEDAVQNTPIF 551
Query: 378 ----------ADVSAILGSLDIVFGE 393
D+ + S D
Sbjct: 552 EENGPDKFKGIDIMRTVRSFDPCLPC 577
>gi|7670044|dbj|BAA94971.1| NADH dehydrogenase subunit 7 [Beta vulgaris subsp. vulgaris]
Length = 44
Score = 71.9 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/42 (69%), Positives = 39/42 (92%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLL 45
++ ++FT+NFGPQHPAAHGV RL+LE++GE+VER +PHIGLL
Sbjct: 3 RQIKNFTLNFGPQHPAAHGVSRLVLEMNGEVVERAEPHIGLL 44
>gi|224107563|ref|XP_002333493.1| predicted protein [Populus trichocarpa]
gi|222837062|gb|EEE75441.1| predicted protein [Populus trichocarpa]
Length = 62
Score = 71.5 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/45 (68%), Positives = 38/45 (84%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGT 49
+ ++FT NFGPQHPAAHGV R +LE++GE+VER DPHIGLL GT
Sbjct: 7 QIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERADPHIGLLQCGT 51
>gi|255557500|ref|XP_002519780.1| NADH-plastoquinone oxidoreductase 49 kD subunit, putative [Ricinus
communis]
gi|223541019|gb|EEF42576.1| NADH-plastoquinone oxidoreductase 49 kD subunit, putative [Ricinus
communis]
Length = 421
Score = 71.5 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 48/161 (29%), Positives = 63/161 (39%), Gaps = 51/161 (31%)
Query: 103 YSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVH 162
E+ RI SHLL + D+GA TP + F RE+
Sbjct: 1 MLELSRIASHLLWLGPFMADIGAQTPFFYNF--RER------------------------ 34
Query: 163 QDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMI 222
+ DL +R +G V E+A WG SG M+
Sbjct: 35 ----------------------ELVYDLFEAAT---ERVEGVGIVGAEEAINWGLSGPML 69
Query: 223 RGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRM 263
R SG WDLR+ YECY E D+++ K GD RYLVR+
Sbjct: 70 RASGVQWDLRQVDHYECYDEFDWEVQWQKEGDSLARYLVRI 110
>gi|269128783|ref|YP_003302153.1| cytochrome-c3 hydrogenase [Thermomonospora curvata DSM 43183]
gi|268313741|gb|ACZ00116.1| Cytochrome-c3 hydrogenase [Thermomonospora curvata DSM 43183]
Length = 597
Score = 71.5 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 13/124 (10%), Positives = 30/124 (24%), Gaps = 22/124 (17%)
Query: 291 ASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV-GEVYAAVEAPKGEFGVYLISDGG 349
++++M+ + + + + VP EA +G +L+
Sbjct: 450 YFVAYAAAMAFQFIEQAMQRVRSGDQKVFQDFDVPEEAIGAGFHEAVRGVLSHHLVIR-D 508
Query: 350 NKPYRCKIRAPGYAHLQA---------MEFLCKGHQL-----------ADVSAILGSLDI 389
K P + E + + D+ + S D
Sbjct: 509 GKIANYHPYPPTPWNASPRDNYGTPGPYEDAVQDMPIFEENGPENFRGVDIMRTVRSFDP 568
Query: 390 VFGE 393
Sbjct: 569 CLPC 572
Score = 70.4 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 23/128 (17%), Positives = 31/128 (24%), Gaps = 5/128 (3%)
Query: 34 IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIP 93
V L RG ++ K A R+ + N A GI+ P
Sbjct: 43 RVVECH-STSSLFRGYSVFMKGKDPRDAGFITSRICGICGDNHTTCSVYAQNMAYGIKTP 101
Query: 94 IRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLW----GFEEREKLMVFYERASGS 149
+ G+LI L + H L E G
Sbjct: 102 VLGELIINLGEAAEYMFDHTLFQDNLVFVDFCEAMVKDTNPSVLRRAETTEAPRAAVHGK 161
Query: 150 RMHAAYFR 157
R A R
Sbjct: 162 RTIADIMR 169
>gi|38637679|ref|NP_942653.1| HoxV [Ralstonia eutropha H16]
gi|399932|sp|P31914|HOXV_RALEH RecName: Full=Hydrogenase expression/formation protein hoxV
gi|141943|gb|AAA16471.1| hoxV [Ralstonia eutropha H16]
gi|32527017|gb|AAP85767.1| HoxV [Ralstonia eutropha H16]
Length = 383
Score = 71.5 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 49/358 (13%), Positives = 86/358 (24%), Gaps = 34/358 (9%)
Query: 50 EKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRI 109
E+L+ + A RL + ALAV LG L R L E
Sbjct: 30 ERLLRGRPGEAAPHLLPRLFALCGEAHGVTAALAVNAALGRVAAPEPALFRRLAHETAC- 88
Query: 110 LSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL 169
H+ + A P F R + H+ +
Sbjct: 89 -EHIRRIWLDWPLHLASGPVPSTFNSRVPQRELIDCPMLKASHSESAAMLAWLERAVLG- 146
Query: 170 VEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAW 229
D + L+ + + S A+
Sbjct: 147 ----TAPRRWLAHWHEDPAGCLSTWATKIHTWPAMAMRQCMQVAQAMASMPAPLLPHAST 202
Query: 230 DLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPV 289
D + E DF G ++ + + + + ++
Sbjct: 203 DALRELAQSLAGEADFPCRPSWQGRVFETGSWTRLGLADCSAFGNMWLRLGARIAEL--- 259
Query: 290 SASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGG 349
++ R M+ S E+ P G+ A E +G ++
Sbjct: 260 ------VLLSLRDGMQASGEAHDSPCLQMGALALAP-GQALAWSEMARGLLMHWVRLVDT 312
Query: 350 ---NKPYRCKIRAPGYAHL---QAMEFLCKGHQL-----ADVSAILG----SLDIVFG 392
+I AP + A+ + L ADV +G + D
Sbjct: 313 PQGPVIGGYRIIAPTEWNFHPDGAVAHML--AHLAPFDAADVRRSIGILVAAYDPCVP 368
>gi|20093975|ref|NP_613822.1| coenzyme F420-reducing hydrogenase, alpha subunit [Methanopyrus
kandleri AV19]
gi|19886937|gb|AAM01752.1| Coenzyme F420-reducing hydrogenase, alpha subunit [Methanopyrus
kandleri AV19]
Length = 370
Score = 71.5 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 56/369 (15%), Positives = 107/369 (28%), Gaps = 22/369 (5%)
Query: 19 AAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
A G L ++ E+ + V + G E L+ K AV +R+ +
Sbjct: 15 GAPGELYMVAEIAEDKVVNAEVCSGTTPISWETLVLEKPVEFAVVAAERVCASCDASLGL 74
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREK 138
A A E L +EIP + R + + + +H + L ++
Sbjct: 75 AVVEAAEAALNVEIPDEAERAREILNMANVVRAHATVLA----RTDFLDVKKPAYDLVRA 130
Query: 139 LMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFK 198
G H GG+ + P V+ + + + D +
Sbjct: 131 AKDIMHAVGGKPDHPPAVTVGGLDLEKLP--VDRVESVAKDAAEVADRLEDEVGSA---V 185
Query: 199 QRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDR 258
R V+ E+ +G + P E Y YD
Sbjct: 186 DRMKEDIDVEPEEMPAGLKVSDTYKGDIDPDKVETLMPDEFYRMKTTLEIANNVVARYDG 245
Query: 259 YLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLY 318
V + R+ + + + V + ++ L +
Sbjct: 246 EPVLVGPY-----------ARVRSAENPLDLYTARAEEVARMLDGIANAVSRLDPTG-NF 293
Query: 319 TEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLA 378
+ GE AAVEAP+G V L + + + P + A+ + + +
Sbjct: 294 RTDVELGSGEGTAAVEAPEGTLIVSLRLRA-GRVDKALMLTPCNFKVAAIGEMVRDLTVD 352
Query: 379 DVSAILGSL 387
+L ++
Sbjct: 353 RAETVLRAI 361
>gi|302556814|ref|ZP_07309156.1| hydrogen:quinone oxidoreductase [Streptomyces griseoflavus Tu4000]
gi|302474432|gb|EFL37525.1| hydrogen:quinone oxidoreductase [Streptomyces griseoflavus Tu4000]
Length = 593
Score = 71.1 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 13/124 (10%), Positives = 27/124 (21%), Gaps = 22/124 (17%)
Query: 291 ASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV-GEVYAAVEAPKGEFGVYLISDGG 349
++ +E + E + VP EA +G +L+
Sbjct: 445 YFQAYSAAVALHFAEKGLEEVRAGRTQTWEKFEVPEESIGVGFTEAVRGVLSHHLVIR-D 503
Query: 350 NKPYRCKIRAPGYAHLQ---------AMEFLCKGHQL-----------ADVSAILGSLDI 389
+ P + E + + D+ + S D
Sbjct: 504 GRIANYHPYPPTPWNASTRDTYGTPGPYEDAVQNTPIFEENSPENFKGIDIMRAVRSFDP 563
Query: 390 VFGE 393
Sbjct: 564 CLPC 567
Score = 68.8 bits (167), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/244 (10%), Positives = 53/244 (21%), Gaps = 12/244 (4%)
Query: 45 LHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYS 104
+ RG + K + R+ + N A G++ P G+ I L
Sbjct: 50 VFRGYSLFMRGKDPRDSHFITSRICGICGDNHATCSVYAQNMAYGVKPPHLGEWIINLGE 109
Query: 105 EIGRILSHLLNVTTQAMDVGALTPPLW----GFEEREKLMVFYERASGSRMHAAYFRPGG 160
+ H + E E+ + G R A R
Sbjct: 110 SAEYMFDHNIFQENLVGVDYCEKMVRETNPGVLELAERTEAPHAAEHGYRTIADIMRSLN 169
Query: 161 VHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGV 220
+ + + L R + G V + +
Sbjct: 170 PLEGEFYREALQVSRYTREMFC--------LMEGRHVHPSTLYPGGVGTVASVQLFTDYM 221
Query: 221 MIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRL 280
+ R ++ + ++ G R L+ + +
Sbjct: 222 TRLMRYVEFMKRVVPLHDDLFDFFYEALPGYEEVGRRRVLLGCWGALNDPEYCDFTYANM 281
Query: 281 LGKN 284
Sbjct: 282 TDWG 285
>gi|325677297|ref|ZP_08156963.1| hydrogen:quinone oxidoreductase [Rhodococcus equi ATCC 33707]
gi|325551994|gb|EGD21690.1| hydrogen:quinone oxidoreductase [Rhodococcus equi ATCC 33707]
Length = 597
Score = 71.1 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 26/222 (11%), Positives = 49/222 (22%), Gaps = 46/222 (20%)
Query: 45 LHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYS 104
+ RG ++ K A R+ + N A G++ P G+ I L
Sbjct: 55 IFRGYSLFMKGKDPRDAHFITSRICGICGDNHATCSCYAQNMAYGVQPPHLGEWIANLGE 114
Query: 105 EIGRILSHLLNV----------------------------TTQAMDVGALTP-------- 128
+ H + + G T
Sbjct: 115 AAEYMFDHNIFQENLVAVDYCEKMVSETNPGVLAMAEKTAAPHSDAHGYRTVADIMRALN 174
Query: 129 ------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELV----EDIGCWCD 178
+ G +H + PGGV +L+ + + +
Sbjct: 175 PFTGEFYREALLISRLTREMFCLMEGRHVHPSTLYPGGVGTVATVQLITDYTTRLMRYIE 234
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGV 220
+ DL ++G + F
Sbjct: 235 FMKKVVPMHDDLFDFFYEALPGYEHVGERRTLLGCWGAFQDP 276
Score = 68.8 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 13/95 (13%), Positives = 22/95 (23%), Gaps = 22/95 (23%)
Query: 320 EGYHVP-VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AME 369
E + VP G EA +G +++ K P + E
Sbjct: 479 ETFEVPDEGIGCGFTEAVRGVLSHHMVIR-DGKIANYHPYPPTPWNASPRDAEGVPGPYE 537
Query: 370 FLCKGHQLA-----------DVSAILGSLDIVFGE 393
+ D+ + S D
Sbjct: 538 DAVTNLNIYEENDRDHFKGIDIMRTVRSFDPCLPC 572
>gi|312141490|ref|YP_004008826.1| hydrogenase large subunit [Rhodococcus equi 103S]
gi|311890829|emb|CBH50148.1| hydrogenase large subunit [Rhodococcus equi 103S]
Length = 593
Score = 70.7 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 26/222 (11%), Positives = 49/222 (22%), Gaps = 46/222 (20%)
Query: 45 LHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYS 104
+ RG ++ K A R+ + N A G++ P G+ I L
Sbjct: 51 IFRGYSLFMKGKDPRDAHFITSRICGICGDNHATCSCYAQNMAYGVQPPHLGEWIANLGE 110
Query: 105 EIGRILSHLLNV----------------------------TTQAMDVGALTP-------- 128
+ H + + G T
Sbjct: 111 AAEYMFDHNIFQENLVAVDYCEKMVSETNPGVLAMAEKTAAPHSDAHGYRTVADIMRALN 170
Query: 129 ------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELV----EDIGCWCD 178
+ G +H + PGGV +L+ + + +
Sbjct: 171 PFTGEFYREALLISRLTREMFCLMEGRHVHPSTLYPGGVGTVATVQLITDYTTRLMRYIE 230
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGV 220
+ DL ++G + F
Sbjct: 231 FMKKVVPMHDDLFDFFYEALPGYEHVGERRTLLGCWGAFQDP 272
Score = 68.4 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 13/109 (11%), Positives = 23/109 (21%), Gaps = 21/109 (19%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K +E K + G EA +G +++ K P +
Sbjct: 461 KALVEINAGRTKTWETFEVPDEGIGCGFTEAVRGVLSHHMVIR-DGKIANYHPYPPTPWN 519
Query: 365 LQ---------AMEFLCKGHQLA-----------DVSAILGSLDIVFGE 393
E + D+ + S D
Sbjct: 520 ASPRDAEGVPGPYEDAVTNLNIYEENDRDHFKGIDIMRTVRSFDPCLPC 568
>gi|299139674|ref|ZP_07032847.1| Cytochrome-c3 hydrogenase [Acidobacterium sp. MP5ACTX8]
gi|298598298|gb|EFI54463.1| Cytochrome-c3 hydrogenase [Acidobacterium sp. MP5ACTX8]
Length = 600
Score = 70.7 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 23/222 (10%), Positives = 45/222 (20%), Gaps = 46/222 (20%)
Query: 45 LHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYS 104
+ RG ++ K A R+ + N A G+ P + I L
Sbjct: 55 IFRGYSVFMKGKDPRDAHFITSRICGICGDNHATCAVYAQNMAFGVRPPALAEWIINLGE 114
Query: 105 EIGRILSHLLNVTTQAMDVGA--------------------------------------- 125
+ H +
Sbjct: 115 AAEYMFDHNIFQDNLVGVDFCEQMVKETNPGVWDKAQSTPSPNADKHGYKTIADIMTALN 174
Query: 126 ---LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIP----PELVEDIGCWCD 178
T + G +H + PGGV + + + + +
Sbjct: 175 PFTGTFYRETLAMSRLTREMFCLMEGRHVHPSTLYPGGVGTVATIQLFTDYLVRLMKYVE 234
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGV 220
+ DL +G + A ++
Sbjct: 235 FMKKVVPLHDDLFDFFYEALPGYEKVGLRRTLLACWGSYNDP 276
Score = 70.0 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 11/96 (11%), Positives = 21/96 (21%), Gaps = 21/96 (21%)
Query: 318 YTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAM 368
++E EA +G +++ K P +
Sbjct: 480 WSEFKVPDDAIGCGFHEAVRGVLSHHVVIR-DGKIANYHPYPPTPWNANPRDIYGTPGPY 538
Query: 369 EFLCKGHQL-----------ADVSAILGSLDIVFGE 393
E + L D+ + S D
Sbjct: 539 EDAVQNTPLFEENGPDKFKGIDIMRTVRSFDPCLPC 574
>gi|254171988|ref|ZP_04878664.1| cytosolic NiFe-hydrogenase, alpha subunit [Thermococcus sp. AM4]
gi|214033884|gb|EEB74710.1| cytosolic NiFe-hydrogenase, alpha subunit [Thermococcus sp. AM4]
Length = 248
Score = 70.7 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/208 (15%), Positives = 54/208 (25%), Gaps = 16/208 (7%)
Query: 198 KQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI-PIGKHGDCY 256
K RN G G + + +S +G
Sbjct: 38 KPRNDVYGIYGDYIKASDGNEFPSESYREHIKEFVVEHSFAKHSHYHGKPFMVGAISRVV 97
Query: 257 DRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFK 316
+ + + RE ++ + N A ++V + E+L
Sbjct: 98 NNWKLLYGRARELYDAHKELLR---PTNPFANNLAQALELVYFIERGIDLLDEALAKWPI 154
Query: 317 LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF----LC 372
+ V G + EAP+G L G K I P +L ME +
Sbjct: 155 RPRDEVAVKDGFGVSTTEAPRGVLVYALEVKG-GKVAYADIITPTAFNLAMMEEHVRMMA 213
Query: 373 KGHQLADVSAI-------LGSLDIVFGE 393
+ H D I + + D
Sbjct: 214 EKHYNDDPERIKFLTEMVVRAYDPCISC 241
>gi|86740646|ref|YP_481046.1| hydrogen:quinone oxidoreductase [Frankia sp. CcI3]
gi|86567508|gb|ABD11317.1| Hydrogen:quinone oxidoreductase [Frankia sp. CcI3]
Length = 597
Score = 70.7 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 29/240 (12%), Positives = 48/240 (20%), Gaps = 49/240 (20%)
Query: 45 LHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYS 104
L RG ++ K A R+ + N A GI P + I L
Sbjct: 53 LFRGYSVFMKGKDPRDAGFITSRICGICGDNHTTCSVYAQNMAYGIANPPMAEWIINLGE 112
Query: 105 EIGRILSHLLNVTTQAMDVGALTP------------------------------------ 128
+ H +
Sbjct: 113 AAEYLFDHTIFQDNLVFVDFCEAMVKQTNPGVLARAEATAAPNAAVHGMRTIADIMRSFN 172
Query: 129 ------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP----ELVEDIGCWCD 178
+ + G +H + PGGV P + + + D
Sbjct: 173 PFEGEIYREALKVSRITREMFCLMEGRHVHPSTLYPGGVGTMPEPTVFTDYLSRLMEILD 232
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMI---RGSGAAWDLRKSQ 235
A+ DL +G ++ F + R R
Sbjct: 233 FVKKAVALNDDLFDFWYEALPGYEEVGRRRVLLGCWGAFQDPNVVDYRYENMTTWGRAMH 292
Score = 66.9 bits (162), Expect = 5e-09, Method: Composition-based stats.
Identities = 14/146 (9%), Positives = 32/146 (21%), Gaps = 22/146 (15%)
Query: 269 SVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP-VG 327
+V + + + +++ M+ + + VP
Sbjct: 428 AVDLQWKPPAWSNAIERDRARVYFVAYAAAMALYFLEQGMDRVRSGDTRVFCDFDVPDET 487
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA---------MEFLCKGHQL- 377
EA +G +++ K P + E + +
Sbjct: 488 IGCGFHEAVRGVLSHHMVVR-DGKIANYHPYPPTPWNGSPRDFFGTPGPYEDAVQNMPIF 546
Query: 378 ----------ADVSAILGSLDIVFGE 393
DV + S D
Sbjct: 547 EENGPEGFKGVDVMRTVRSFDPCLPC 572
>gi|296447203|ref|ZP_06889133.1| Cytochrome-c3 hydrogenase [Methylosinus trichosporium OB3b]
gi|296255262|gb|EFH02359.1| Cytochrome-c3 hydrogenase [Methylosinus trichosporium OB3b]
Length = 602
Score = 70.7 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 12/96 (12%), Positives = 21/96 (21%), Gaps = 21/96 (21%)
Query: 318 YTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAM 368
+TE EA +G +L+ + P +
Sbjct: 481 WTEFTVPDEAIGCGFHEAVRGVLSHHLVIRE-GRIANYHPYPPTPWNATPRDDFGTPGPY 539
Query: 369 EFLCKGHQL-----------ADVSAILGSLDIVFGE 393
E + L D+ + S D
Sbjct: 540 EDAVQNTPLFEENGRDKFKGIDIMRTVRSFDPCLPC 575
Score = 67.7 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 12/87 (13%), Positives = 21/87 (24%)
Query: 45 LHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYS 104
+ RG ++ K + R+ + N A GI+ P I L
Sbjct: 55 IFRGYSVFLKGKDPRDSHFITSRICGICGDNHATCSVYAQNMAYGIKPPPLADWIINLGE 114
Query: 105 EIGRILSHLLNVTTQAMDVGALTPPLW 131
+ H +
Sbjct: 115 AAEYMFDHNIFQDNLVGVDFCEQMVKE 141
>gi|297197969|ref|ZP_06915366.1| Ni-dependent hydrogenase large subunit [Streptomyces sviceus ATCC
29083]
gi|197715030|gb|EDY59064.1| Ni-dependent hydrogenase large subunit [Streptomyces sviceus ATCC
29083]
Length = 594
Score = 70.4 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 12/95 (12%), Positives = 22/95 (23%), Gaps = 22/95 (23%)
Query: 320 EGYHVPV-GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AME 369
E + VP EA +G +++ K P + E
Sbjct: 475 EKFEVPEESIGVGFTEAVRGVLSHHMVIR-DGKIANYHPYPPTPWNASVRDTYGTPGPYE 533
Query: 370 FLCKGHQL-----------ADVSAILGSLDIVFGE 393
+ + D+ + S D
Sbjct: 534 DAVQNTPIFEENTPENFKGIDIMRAVRSFDPCLPC 568
Score = 70.4 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 19/117 (16%), Positives = 30/117 (25%), Gaps = 4/117 (3%)
Query: 45 LHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYS 104
+ RG + K A R+ + N A G++ P G+ I L
Sbjct: 51 VFRGYSVFMRGKDPRDAHFITSRICGICGDNHATCSVYAQNMAYGVKPPHLGEWIINLGE 110
Query: 105 EIGRILSHLLNVTTQAMDVGALTPPLW----GFEEREKLMVFYERASGSRMHAAYFR 157
+ H + E E+ + G R A R
Sbjct: 111 SAEYMFDHNIFQENLVGVDYCEKMVKETNPGVLELAERTEAPHAAEHGYRTIADIMR 167
>gi|323139232|ref|ZP_08074287.1| coenzyme F420-reducing hydrogenase alpha subunit-like
[Methylocystis sp. ATCC 49242]
gi|322395530|gb|EFX98076.1| coenzyme F420-reducing hydrogenase alpha subunit-like
[Methylocystis sp. ATCC 49242]
Length = 365
Score = 70.4 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 46/356 (12%), Positives = 88/356 (24%), Gaps = 49/356 (13%)
Query: 52 LIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILS 111
L++ + A L + +Q A A+ + I Q L RI
Sbjct: 37 LLKNTPAVNAPSLVGTLFTLCAASQRIASQAALSAAIAQPITETMQRRWALALHAERIAE 96
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
HL G + F + + R +G+ + D+ E
Sbjct: 97 HLRAAVLDWPGAG-DSAERRAFAPAVRAALSAAREAGA----PGVDISKIRADLMAAARE 151
Query: 172 DIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDA-WGWGFSGVMIRGSGAAWD 230
G F L + + G +R +
Sbjct: 152 -TGAPTQDFEPPSQGWWGRLWRDASTCAEAAPFPPQADFLSAADAGAVHRALRARSRDFL 210
Query: 231 LRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVS 290
R + P + +R + ++ Q ++
Sbjct: 211 SRPTLP---------GRAVETGAFARRFAQLRRDIGLFAARLQAQLLD------------ 249
Query: 291 ASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGN 350
+ ++ S H +L H P GE ++ V++P+G +
Sbjct: 250 ------IVDSLDALRSLENSRGLHNRLVAAWSHSP-GEGFSLVDSPRGLLFHRIAVGADG 302
Query: 351 KPYRCKIRAPGYAHLQAMEFLCKGHQLA--D----------VSAILGSLDIVFGEV 394
I AP + L + LA D ++ ++ D
Sbjct: 303 GVTSYDILAPTEWNFHPAGPLAR--LLATLDLSRQAQARLFIARLMALFDPCTFCT 356
>gi|111221822|ref|YP_712616.1| uptake hydrogenase large subunit [Frankia alni ACN14a]
gi|111149354|emb|CAJ61042.1| Uptake hydrogenase large subunit (Hydrogenlyase) (Membrane-bound
hydrogenase large subunit) [Frankia alni ACN14a]
Length = 597
Score = 70.4 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 27/224 (12%), Positives = 45/224 (20%), Gaps = 46/224 (20%)
Query: 45 LHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYS 104
L RG ++ K A R+ + N A GI P + I L
Sbjct: 53 LFRGYSVFMKGKDPRDAGFITSRICGICGDNHTTCSVYAQNMAYGIANPPMAEWIINLGE 112
Query: 105 EIGRILSHLLNVTTQAMDVGALTP------------------------------------ 128
+ H +
Sbjct: 113 AAEYLFDHTIFQDNLVFVDFCEAMVKETNPGVLARAEATACPHAEVHGLRTIADIMRALN 172
Query: 129 ------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP----ELVEDIGCWCD 178
+ G +H + PGGV P + + + D
Sbjct: 173 PFEGQIYNEALRVSRITREMFCLMEGRHVHPSTLYPGGVGTMPEPTVFTDYLTRLMEILD 232
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMI 222
A+ DL +G ++ F +
Sbjct: 233 FVKKAVALNDDLFDFWYDALPGYEEVGRRRVLLGCWGAFQDPNV 276
Score = 64.6 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/146 (10%), Positives = 31/146 (21%), Gaps = 28/146 (19%)
Query: 269 SVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP-VG 327
S + R + ++R+M + + VP
Sbjct: 434 SPPAWSNAIERDRAR------VYFVAYAAGMALHFLERAMARVRSGDTRTFTDFEVPDET 487
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA---------MEFLCKGHQL- 377
EA +G +++ K P + E + +
Sbjct: 488 IGCGFHEAVRGVLSHHMVVR-DGKIANYHPYPPTPWNGSPRDSFGTPGPYEDAVQNMPIF 546
Query: 378 ----------ADVSAILGSLDIVFGE 393
DV + S D
Sbjct: 547 EENGPESFKGVDVMRAVRSFDPCLPC 572
>gi|300785685|ref|YP_003765976.1| hydrogenase large subunit [Amycolatopsis mediterranei U32]
gi|299795199|gb|ADJ45574.1| hydrogenase large subunit [Amycolatopsis mediterranei U32]
Length = 598
Score = 70.4 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 14/95 (14%), Positives = 24/95 (25%), Gaps = 22/95 (23%)
Query: 320 EGYHVP-VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AME 369
E + VP G EA +G +++ G K P + E
Sbjct: 479 EPFKVPDEGVSCGFTEAVRGVLSHHMVIKG-GKIANYHPYPPTPWNGSVRDSFGTPGPYE 537
Query: 370 FLCKGHQL-----------ADVSAILGSLDIVFGE 393
+ + D+ + S D
Sbjct: 538 DAVQNTPIFEENTQENFKGIDIMRAVRSFDPCLPC 572
Score = 69.6 bits (169), Expect = 8e-10, Method: Composition-based stats.
Identities = 28/233 (12%), Positives = 50/233 (21%), Gaps = 47/233 (20%)
Query: 34 IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIP 93
V + RG ++ K A R+ + N A G+ P
Sbjct: 45 RVVECH-STSSVFRGYSIFMKGKDPRDAHFITSRICGICGDNHATCSVYAQNMAYGVRPP 103
Query: 94 IRGQLIRVLYSEIGRILSHLLNV----------------------------TTQAMDVGA 125
G+ I L + H + A D G
Sbjct: 104 HLGEWILNLGEAAEYMFDHNIFQENLVGVDYCEKMVAETNPGVLEQANRTEAPHARDHGY 163
Query: 126 LTP--------------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIP----P 167
T + + G +H + PGGV
Sbjct: 164 KTIGDIMRSLNPLEGEFYREALQVSRSTREMFCLMEGRHVHPSTLYPGGVGTVATVQLFT 223
Query: 168 ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGV 220
+ + + + + L DL +G ++ +
Sbjct: 224 DYLTRLMRYVEFMKRCLPMHDDLFDFFYEALPGYEEVGRRRVLLGCWGSLNDP 276
>gi|22204176|emb|CAC86887.1| membrane-bound NiFe hydrogenase [Acidianus ambivalens]
Length = 628
Score = 70.4 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 22/114 (19%), Positives = 36/114 (31%), Gaps = 4/114 (3%)
Query: 22 GVLRLILELD---GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G L L +D G+++ + RG E + + AV R V +
Sbjct: 17 GHLGLTATVDPNTGQVINNQAYTYVTMFRGFEVFLRGRQPPDAVHIVSRSCGVCGAAHAN 76
Query: 79 AYALAVEKLLGIEIPIRGQLIRVLYSEIG-RILSHLLNVTTQAMDVGALTPPLW 131
A A + LG GQ +R L + I H + + +
Sbjct: 77 ASVRANDMALGAVPYPLGQALRNLAYAMTDMIYDHSIILNVLEGPDFSAEVMQQ 130
Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/256 (10%), Positives = 55/256 (21%), Gaps = 59/256 (23%)
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDI 247
+L + K N D + W ++ G W Y +
Sbjct: 361 VNLYMYHPWNKTTIPNPMAPNFMDKYSWDAEPRLVWKDGTMW---------AYETGPWAR 411
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPK----------IV 297
+ E I + G V P
Sbjct: 412 LHAVAITSNSPIVKNGQITIELPTISELPSDLPSGAGPAWTVEWLPPDESTTLSRILGRA 471
Query: 298 PPKRADMKRSMESLIHHFKLYTE---------GYHVPV-GEVYAAVEAPKGEFGVYLISD 347
A + + ++L + ++Y + + P E P+G +++
Sbjct: 472 VDMAAAIFTAWDNLEYALEVYMKNQSSPQTSRPWKQPSFSLGVGQYEVPRGTSRHWMVVK 531
Query: 348 GGNKPYRCKIRAPGYAH------------------LQAMEFLCKGHQLA----------- 378
+ +AP + + A E ++
Sbjct: 532 -DYTIANYQYQAPTTPNVSPRDNNCNGPWCINGQAIGAFEMSVINTKIMEEVPPDQWVGY 590
Query: 379 DVSAILGSLDIVFGEV 394
D + S D
Sbjct: 591 DFLRAIRSFDPCLVCA 606
>gi|8118265|gb|AAF72966.1| NAD7 protein [Spiranthes cernua]
gi|8118268|gb|AAF72967.1| NAD7 protein [Spiranthes vernalis]
gi|8118270|gb|AAF72968.1| NAD7 protein [Spiranthes diluvialis]
gi|8118274|gb|AAF72970.1| NAD7 protein [Spiranthes magnicamporum]
Length = 45
Score = 70.0 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 34/47 (72%), Positives = 40/47 (85%), Gaps = 2/47 (4%)
Query: 15 PQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
PQHPAAHGV R +LE++GE+VER +PHIGLL TEKLIE KT+LQA
Sbjct: 1 PQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQ--TEKLIEYKTYLQA 45
>gi|302532414|ref|ZP_07284756.1| Ni-dependent hydrogenase large subunit [Streptomyces sp. C]
gi|302441309|gb|EFL13125.1| Ni-dependent hydrogenase large subunit [Streptomyces sp. C]
Length = 594
Score = 70.0 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 35/309 (11%), Positives = 67/309 (21%), Gaps = 49/309 (15%)
Query: 45 LHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYS 104
+ RG + K A R+ + N A G++ P G+ I L
Sbjct: 51 VFRGYSVFMRGKDPRDAHFITSRICGICGDNHATCSVYAQNMAYGVKPPHLGEWIINLGE 110
Query: 105 EIGRILSHLLNV----------------------------TTQAMDVGALTP-------- 128
+ H + A + G T
Sbjct: 111 SAEYMFDHNIFQENLVGVDYCEKMVRETNPGVLELAERTEAPHAAEHGYRTIADIMRSLN 170
Query: 129 ------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
+ + G +H + PGGV +L D +
Sbjct: 171 PIEGEFYREALQVSRYTREMFCLMEGRHVHPSTLYPGGVGTIASVQLFTDYMSRLMRYVE 230
Query: 183 ALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ + L F + G G + + +
Sbjct: 231 FMKRVVPLHDDLFDFFYEALPGYEEVGRRRVLLGCWGALNDPEYCDFTYANMTDWGRKMF 290
Query: 243 LDFDIPIGKHGDCYDRYLVRMME-------MRESVKIIRQCVNRLLGKNKVGPVSASDPK 295
+ + + D + + + + Q V N V P +
Sbjct: 291 VTPGVVVDGKLVTNDLTQINLGIRILLGSSYYDDWEGQEQFVTHDPLGNPVDPRHPWNQH 350
Query: 296 IVPPKRADM 304
+P +
Sbjct: 351 TIPAPQKRA 359
Score = 68.4 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 14/135 (10%), Positives = 31/135 (22%), Gaps = 22/135 (16%)
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L +N+ + + A+ K E + + + EA +G
Sbjct: 436 NALERNRARTYFQAYAAGIALHCAE-KGLAEVRAGRSQTWEKFEVPDESIGCGFTEAVRG 494
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQL-----------A 378
+++ K P + E + +
Sbjct: 495 VLSHHMVIR-DGKIANYHPYPPTPWNASVRDSYGTPGPYEDAVQNTPIFEENPPENFKGI 553
Query: 379 DVSAILGSLDIVFGE 393
D+ + S D
Sbjct: 554 DIMRAVRSFDPCLPC 568
>gi|38637730|ref|NP_942704.1| putative [NiFe] hydrogenase large subunit [Ralstonia eutropha H16]
gi|32527068|gb|AAP85818.1| putative [NiFe] hydrogenase large subunit [Ralstonia eutropha H16]
Length = 603
Score = 70.0 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 13/111 (11%), Positives = 26/111 (23%), Gaps = 22/111 (19%)
Query: 304 MKRSMESLIHHFKLYTEGYHVP-VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
++++ L + VP EA +G +L+ K P
Sbjct: 467 AEQALAELHAGRTRTFTDFKVPDEAIGCGFHEAVRGVLSHHLVIR-DGKIANYHPYPPTP 525
Query: 363 AHLQ---------AMEFLCKGHQL-----------ADVSAILGSLDIVFGE 393
+ E + + D+ + S D
Sbjct: 526 WNASPRDIYGTPGPYEDAVQNTPIFEENGPEKFKGIDIMRAVRSFDPCLPC 576
Score = 68.4 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/251 (8%), Positives = 51/251 (20%), Gaps = 50/251 (19%)
Query: 45 LHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYS 104
+ RG ++ K + R+ + N A G++ P I L
Sbjct: 57 IFRGYSIFMKGKDPRDSHFITSRICGICGDNHATCSVYAQNMAYGVKPPPIADWIINLGE 116
Query: 105 EIGRILSHLLNVTTQAMDVGALTP------------------------------------ 128
+ H +
Sbjct: 117 AAEYMFDHNIFQDNLVGVDFCEQMVRETNPGVWEKAKTAEAPHAAEHGYRTIADIMTALN 176
Query: 129 ------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIP----PELVEDIGCWCD 178
+ G +H + PGGV + + + + +
Sbjct: 177 PFTGEFYRETLLVSRYTREMFCLMEGRHVHPSTLYPGGVGTVPTIQLFTDYITRLMKYVE 236
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYE 238
+ DL +G ++ F + ++ R +
Sbjct: 237 FMKKVVPLHDDLFDFFYEALPGYEEVGRRRILLGCWGSFQDPNV----CDYNYRTMTKWG 292
Query: 239 CYSELDFDIPI 249
+ + +
Sbjct: 293 RGMFVTPGVVV 303
>gi|218513796|ref|ZP_03510636.1| NADH-ubiquinone oxidoreductase protein, chain D [Rhizobium etli
8C-3]
Length = 54
Score = 70.0 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 28/42 (66%), Positives = 33/42 (78%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIG 43
+ +R +N GPQHP+ HGVLRL+LELDGE VERVDPHIG
Sbjct: 13 EALNTREVLLNLGPQHPSTHGVLRLVLELDGEFVERVDPHIG 54
>gi|12238|emb|CAA32693.1| unnamed protein product [Secale cereale]
Length = 42
Score = 70.0 bits (170), Expect = 7e-10, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 27 ILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
I+ LDGE V +P +G LHRG EK+ E +T +Q +PY R+
Sbjct: 1 IVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRI 42
>gi|312196549|ref|YP_004016610.1| Cytochrome-c3 hydrogenase [Frankia sp. EuI1c]
gi|311227885|gb|ADP80740.1| Cytochrome-c3 hydrogenase [Frankia sp. EuI1c]
Length = 596
Score = 69.6 bits (169), Expect = 8e-10, Method: Composition-based stats.
Identities = 12/98 (12%), Positives = 21/98 (21%), Gaps = 21/98 (21%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH---------LQ 366
K + EA +G +++ G K P +
Sbjct: 475 KTWEPFEVPDEAASCGFTEAVRGVLSHHMVIRG-GKIANYHPYPPTPWNGSVRDVYGTAG 533
Query: 367 AMEFLCKGHQL-----------ADVSAILGSLDIVFGE 393
E G + D+ + S D
Sbjct: 534 PYEDAVMGTPIFEENPPERFKGIDIMRAVRSFDPCLPC 571
Score = 67.3 bits (163), Expect = 5e-09, Method: Composition-based stats.
Identities = 25/222 (11%), Positives = 49/222 (22%), Gaps = 46/222 (20%)
Query: 45 LHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYS 104
+ RG ++ K A R+ + N G+ P G+ I L
Sbjct: 54 IFRGYSIFMKGKDPRDAHFITSRICGICGDNHATCSCYCQNMAYGVRPPPLGEWIVNLGE 113
Query: 105 EIGRILSHLLNV----------------------------TTQAMDVGALTP-------- 128
+ H + A + G T
Sbjct: 114 AAEYMFDHNIYQENLVGVDYCEKMVAETNPGVLALANATECPHAAEHGFRTIGDIMRGLN 173
Query: 129 ------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIP----PELVEDIGCWCD 178
+ + G +H + PGGV + + + + +
Sbjct: 174 PISGEFYREALAQSRSTREMFCLMEGRHVHPSTLYPGGVGTVASVQLFTDYLSRLMRYIE 233
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGV 220
+ DL +G ++ F+
Sbjct: 234 FLKRVVPMHDDLFDFVYQAMPGYEEVGRRRVLLGCWGSFNDP 275
>gi|271965281|ref|YP_003339477.1| cytochrome-c3 hydrogenase [Streptosporangium roseum DSM 43021]
gi|270508456|gb|ACZ86734.1| Cytochrome-c3 hydrogenase [Streptosporangium roseum DSM 43021]
Length = 602
Score = 69.6 bits (169), Expect = 9e-10, Method: Composition-based stats.
Identities = 10/96 (10%), Positives = 20/96 (20%), Gaps = 21/96 (21%)
Query: 318 YTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AM 368
+T EA +G +++ K P +
Sbjct: 484 WTPFTVPEEAISCGFTEAVRGVLSHHMVIR-NGKIANYHPYPPTPWNASVRDVNGVPGPY 542
Query: 369 EFLCKGHQL-----------ADVSAILGSLDIVFGE 393
E + + D+ + S D
Sbjct: 543 EDAVQNTPIFEENSPENFKGIDIMRTVRSFDPCLPC 578
Score = 66.1 bits (160), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/222 (11%), Positives = 46/222 (20%), Gaps = 46/222 (20%)
Query: 45 LHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYS 104
+ RG ++ K A R+ + N A G P G+ I
Sbjct: 56 IFRGYSIFMKGKDPRDAHFITSRICGICGDNHATCSVYAQNMAYGARPPALGEWILNCGE 115
Query: 105 EIGRILSHLLNV----------------------------TTQAMDVGALTP-------- 128
+ H + A D G T
Sbjct: 116 AAEYMFDHNIYQENLVGVDYCEKMVRETNPGVLAKAERTEAPHAADHGYKTIADIMRSLN 175
Query: 129 ------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIP----PELVEDIGCWCD 178
+ G +H + PGGV + + + + +
Sbjct: 176 PLEGEFYREALAVSRTTREMFCLMEGRHVHPSTLYPGGVGTVATVQLFTDYLSRLMRYVE 235
Query: 179 SFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGV 220
+ DL +G ++ F
Sbjct: 236 FMKRVVPMHDDLFDFFYDALPGYEEVGRRRVLLGCWGSFQDP 277
>gi|18312050|ref|NP_558717.1| oxidoreductase, truncation [Pyrobaculum aerophilum str. IM2]
gi|18159476|gb|AAL62899.1| oxidoreductase, truncation [Pyrobaculum aerophilum str. IM2]
Length = 167
Score = 69.2 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 10/143 (6%)
Query: 196 IFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDC 255
+ + R +IG + + A G G R SG +D R+ PY+ Y+ + K GD
Sbjct: 1 MTRARLEDIGVLDAKAATELGVVGPFARASGIDFDARRDMPYDAYALFKITPAVEKGGDA 60
Query: 256 YDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHF 315
R +VR E+ S++++R+ + L G + P+ E +
Sbjct: 61 LARTMVRWEEVTTSIQLVREAIKDL----PQGDIIDEAMLFKNPEYRR-----EGVSGVL 111
Query: 316 KLYTEGYHVPVGEVYAAVEAPKG 338
+YT Y GE EA +G
Sbjct: 112 GVYTYLY-PEPGEWTGLAEATRG 133
>gi|414718|emb|CAA53256.1| NADH dehydrogenase [Solanum tuberosum]
Length = 47
Score = 68.8 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/42 (66%), Positives = 37/42 (88%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLL 45
++ ++FT NFGPQHPAAHGV R +LE++GE+VER +PHIGLL
Sbjct: 6 RQIQNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLL 47
>gi|8118272|gb|AAF72969.1| NAD7 protein [Spiranthes romanzoffiana]
Length = 45
Score = 68.8 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/47 (70%), Positives = 39/47 (82%), Gaps = 2/47 (4%)
Query: 15 PQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
PQHPAAHGV R +L ++GE+VER +PHIGLL TEKLIE KT+LQA
Sbjct: 1 PQHPAAHGVSRSVLVMNGEVVERAEPHIGLLQ--TEKLIEYKTYLQA 45
>gi|289064353|gb|ADC80552.1| bidirectional NAD(P)-linked NiFe hydrogenase [uncultured
Comamonadaceae bacterium]
Length = 273
Score = 68.8 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/233 (12%), Positives = 60/233 (25%), Gaps = 29/233 (12%)
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEI---PIRGQLIRVLYSEIGRILSHLLNVTTQAMD-- 122
+ + P++ A + A+++L G++ IR L SH L+ A
Sbjct: 3 ICGICPVSHHLAASKAIDQLHGLDPGDLSPAADKIRRLLHYAQIFQSHALHFFYLAAPDL 62
Query: 123 -----------------VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDI 165
+ G R+ + G ++H PGGVH+
Sbjct: 63 LLNPAGPLATRNVVGVAMANKELARRGILMRKFGQEILQALGGKKIHGITAVPGGVHKTF 122
Query: 166 PPELVEDIGC------WCDSFPSALNDISDLLTG-NRIFKQRNVNIGTVKLEDAWGWGFS 218
D+ D+ D L + + G +
Sbjct: 123 DANERSFFLKGNENLPGIDTMIEWTRDVLDFLADYFSQHRGVVDTFASFDSGHLGLVGPN 182
Query: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVK 271
G + G + + D ++ ++E +
Sbjct: 183 GELELYDGRMRAIDAFGARTLHDVPDISYASHFSESVESWTYLKFPYLKERXR 235
>gi|256068649|ref|XP_002570876.1| NADH-ubiquinone oxidoreductase [Schistosoma mansoni]
gi|238651670|emb|CAZ38561.1| NADH-ubiquinone oxidoreductase fe-s protein 2 (ndufs2), putative
[Schistosoma mansoni]
Length = 87
Score = 68.8 bits (167), Expect = 2e-09, Method: Composition-based stats.
Identities = 46/86 (53%), Positives = 62/86 (72%)
Query: 102 LYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGV 161
LYSEI RI++H L V + +D+G +TP W FEEREK+ FYER SG+RMHAAY RPGGV
Sbjct: 1 LYSEITRIMNHCLAVGSTVLDIGGITPIFWLFEEREKMFEFYERVSGARMHAAYIRPGGV 60
Query: 162 HQDIPPELVEDIGCWCDSFPSALNDI 187
+ D+P L++DI + FP L+++
Sbjct: 61 YLDMPLGLMDDIYQFIQKFPQRLDEV 86
>gi|39934047|ref|NP_946323.1| putative hydrogenase expression/formation protein HupK
[Rhodopseudomonas palustris CGA009]
gi|39647895|emb|CAE26415.1| putative hydrogenase expression/formation protein hupK
[Rhodopseudomonas palustris CGA009]
Length = 369
Score = 68.4 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 54/375 (14%), Positives = 101/375 (26%), Gaps = 48/375 (12%)
Query: 32 GEIVERVDPHIGLLHR---GTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLL 88
G+ V R+D R G +L + K+ V RL + Q A A A+
Sbjct: 18 GDRVVRLDITA----RRPIGIGRLAQGKSGEMIVALVPRLFALCASAQGVAAAQALAAAR 73
Query: 89 GIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASG 148
GI + + R++ L G+
Sbjct: 74 GISLSPVVVAAQASAVLAERMIELLRGTMLLLGGGGSPALTHQL---------------- 117
Query: 149 SRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVK 208
R RP + E + I ++ A +D +R + T+
Sbjct: 118 -RDLMIAARPSNPAAPLDDEAISHIAQGLEALGLAPGSFADAAA-----CRRWLGSDTLM 171
Query: 209 LEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRE 268
E S P + + G + + E
Sbjct: 172 AELHRQLVAEAEFGAAS--------VDPLTAADDAAIGERLTGLGPSFAVRPDLAGRVPE 223
Query: 269 SVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA-DMKRSMESLIHHFKLYTEGYHVPVG 327
+ + R + ++ G +++ ++ R++ + + G
Sbjct: 224 TGALARTAHHPVVAAFGSGLFGRLLARLIEIAATPELLRAVRRGNVDTAAVVQSAPLADG 283
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---QAMEFLCKGHQL----AD- 379
AAVE +G + D + +I AP + + G L AD
Sbjct: 284 IGLAAVECARGRLYHLIALDAEGAIRQFEILAPTEWNFHPEGPLARALVGTNLQATEADR 343
Query: 380 --VSAILGSLDIVFG 392
V ++ + D G
Sbjct: 344 RLVERLVAAFDPCVG 358
>gi|288962280|ref|YP_003452575.1| hydrogenase expression/formation protein [Azospirillum sp. B510]
gi|288914546|dbj|BAI76031.1| hydrogenase expression/formation protein [Azospirillum sp. B510]
Length = 425
Score = 68.4 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 58/398 (14%), Positives = 106/398 (26%), Gaps = 39/398 (9%)
Query: 21 HGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G + + L LDG + R + + + +A L + Q A
Sbjct: 36 EGSVSVRLWLDGTGTIRRAEVATRRP--RAAAALVGRKAEEAARLAPLLFSLCGSAQGLA 93
Query: 80 YALAVEKLLGIEIPIRGQLIRVLYSEIGRILSH-LLNVTTQAMDVGALTPPLWGFEEREK 138
A A E LG + + R L ++ + SH V +GA P R
Sbjct: 94 VARACEAALGTDAGAH-ETARGLLTDAEALDSHGWQAVVEWPARLGAPPRPADLRALRAA 152
Query: 139 LMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFK 198
+ +R RPGG + + + + + +
Sbjct: 153 VSAVMPALYPAR---DGLRPGGGALRPDHAALRAALARMAGW------LEEAVFAGPPPR 203
Query: 199 QRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYEC---YSELDFDIPIGKHGD- 254
+ + + ++ A W + P GD
Sbjct: 204 DADGLAAWAARGGSDAARLAARLLSPDLAGWGVVTRGPGGVALLTERSPARFAAALSGDP 263
Query: 255 CYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK---RSMESL 311
+ + + RQ L + ++ + AD+ ME+
Sbjct: 264 SFATRPRFDGAPALTGPLERQA-EHPLVVSVTERFGDGLARLFAARLADLMGLPWRMEAA 322
Query: 312 IHHFKLYTEGYHVPV------GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
I E +P GE E +G +L DG + ++ AP +
Sbjct: 323 IA-ELRPAEAVTMPAAGSAGLGEGCGVAETARGRLAHWLRLDGDGRLADARMVAPTDWNF 381
Query: 366 QA---MEFLCKG-------HQLADVSAILGSLDIVFGE 393
A + +G V ++ LD
Sbjct: 382 AADGPLARGLEGAAARDRDDAALRVRLLVAMLDPCVAC 419
>gi|213610078|ref|ZP_03369904.1| formate hydrogenlyase subunit 5 [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 67
Score = 68.4 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YA+ + ++ +G+ ++D I+GSLD + DR
Sbjct: 1 YANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 35
>gi|146338759|ref|YP_001203807.1| hydrogenase expression/formation protein hupK [Bradyrhizobium sp.
ORS278]
gi|146191565|emb|CAL75570.1| Hydrogenase expression/formation protein hupK [Bradyrhizobium sp.
ORS278]
Length = 365
Score = 68.4 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 50/352 (14%), Positives = 85/352 (24%), Gaps = 42/352 (11%)
Query: 51 KLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRIL 110
+L K + RL + A AVE G + + R+ R
Sbjct: 35 RLAAGKPAEMLLAALPRLFAFCANAHQVAVLTAVEAARGEQAVPLTRHRRIKAVLAERFA 94
Query: 111 SHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELV 170
L + A P +R + A R + Q L
Sbjct: 95 ELLRG---LLLGPMANEPGTQPLLQRLLQATAVLQEPARVGTPAQVRSETLSQIKTA-LK 150
Query: 171 EDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWD 230
+ + ++ L+ R GV+ A
Sbjct: 151 DLGIGSAPEIVAPETPLARLMAAARK--------AAENGGWRHMPSVHGVLSAADDRAVA 202
Query: 231 LRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVS 290
R ++E+ + R R + GP
Sbjct: 203 ARLMNEGAAFAEMPDLDGCVPETGVWAR--------------------RARADLQAGPAE 242
Query: 291 ASDPKIVPPK-RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGG 349
+I E+ + GY + +G AVE +G + +
Sbjct: 243 RLSARIAELAGLVRSLEDGETEDSCEEQLVAGYALGLGCGAGAVECARGRLYHVVELNAQ 302
Query: 350 NKPYRCKIRAPGYAHL---QAMEFLCKGHQLAD------VSAILGSLDIVFG 392
R + AP + + G L D +S ++GS D G
Sbjct: 303 GHISRFEYLAPTEWNFHRRGPVVTSLMGALLRDGRDRDAISGMIGSFDPCVG 354
>gi|284043998|ref|YP_003394338.1| cytochrome-c3 hydrogenase [Conexibacter woesei DSM 14684]
gi|283948219|gb|ADB50963.1| Cytochrome-c3 hydrogenase [Conexibacter woesei DSM 14684]
Length = 593
Score = 68.4 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 11/93 (11%), Positives = 22/93 (23%), Gaps = 22/93 (23%)
Query: 322 YHVP-VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFL 371
+ VP EA +G +++ K + P + E
Sbjct: 479 FRVPQEAISVGFHEAARGVLSHHMVIRE-GKIANYQPYPPTPWNANPRDVHGTPGPYEDA 537
Query: 372 CKGHQL-----------ADVSAILGSLDIVFGE 393
+ + D+ + S D
Sbjct: 538 VQNTPIFEENGPDRFRGVDIMRAVHSFDPCLPC 570
Score = 66.9 bits (162), Expect = 5e-09, Method: Composition-based stats.
Identities = 23/216 (10%), Positives = 42/216 (19%), Gaps = 46/216 (21%)
Query: 45 LHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYS 104
+ RG + ++ A R+ + N L ++ P G L
Sbjct: 51 IFRGFDIFMKGIDPRDAHFITSRICGICGDNHCTCSCLNQNMAYSVKPPKLGDYAFNLAE 110
Query: 105 EIGRILSHLLNVTTQAMDVGALTP------------------------------------ 128
+ H + A +
Sbjct: 111 SADFMFDHAIYNDCMANVDYSEQMVKETNPAVLEKAERTPAPHAAIHGYRTIADIMRSLN 170
Query: 129 ------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPS 182
L + Y G H + PGG DI + + + +
Sbjct: 171 AFTGDFYLETLQVARYTREMYCLFGGRHTHPSTILPGGCSADITHQTLTEYYVRLMRYID 230
Query: 183 ALNDIS----DLLTGNRIFKQRNVNIGTVKLEDAWG 214
DL +G +
Sbjct: 231 YCKRTVPMHDDLYDFFYEALPGYERVGYRDTDIICW 266
>gi|307596410|ref|YP_003902727.1| nickel-dependent hydrogenase large subunit [Vulcanisaeta distributa
DSM 14429]
gi|307551611|gb|ADN51676.1| nickel-dependent hydrogenase large subunit [Vulcanisaeta distributa
DSM 14429]
Length = 642
Score = 68.4 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 18/108 (16%), Positives = 33/108 (30%), Gaps = 4/108 (3%)
Query: 20 AHGVLRLILELDGEI--VERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQE 77
G L +E+D V ++ RG E + + A+ R V
Sbjct: 14 IEGHLAAYIEIDSSTKHVTSA-YTSAMMFRGFEVFLRGRPPEDAIAITSRSCGVCGAAHA 72
Query: 78 HAYALAVEKLLGIEIPIRGQLIRVLYSEIG-RILSHLLNVTTQAMDVG 124
+A +A + G G +R + + I H + +
Sbjct: 73 NASVVANDVASGYTPTPLGVALRNMAYAMTDYIYDHSIILNMLGGPDY 120
Score = 51.9 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/174 (14%), Positives = 48/174 (27%), Gaps = 39/174 (22%)
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
G D Y + + S I R + R + V ++ ++ + + A
Sbjct: 453 GGCPDLYGELTITWKMPQYSTTIER-VLARAVHLALVANIAWANLEYALAQWAAGHTHAS 511
Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLI--SDGGNKPYRCKIRAPGYAHLQ- 366
S H + Y + + V P+G +L+ SD K + +AP ++
Sbjct: 512 SPWQHGSYPSFSYSI----GWWHV--PRGTNQHWLVQSSD---KILNYQYQAPTTKNVSP 562
Query: 367 ---------------AMEFLCKGHQLA-----------DVSAILGSLDIVFGEV 394
E + D+ + S D
Sbjct: 563 RNNRCTGPYASQCTGPFEMSALNSWVTEEVPPDQWTGLDIVRAIRSFDPCLACA 616
>gi|158314322|ref|YP_001506830.1| hydrogen:quinone oxidoreductase [Frankia sp. EAN1pec]
gi|158109727|gb|ABW11924.1| Hydrogen:quinone oxidoreductase [Frankia sp. EAN1pec]
Length = 596
Score = 68.0 bits (165), Expect = 3e-09, Method: Composition-based stats.
Identities = 29/258 (11%), Positives = 55/258 (21%), Gaps = 43/258 (16%)
Query: 34 IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIP 93
V + RG ++ K A R+ + N A G++ P
Sbjct: 44 RVVECH-STSSIFRGYSIFMKDKDPRDAHFITSRICGICGDNHATCSVYAQNMAYGVKPP 102
Query: 94 IRGQLIRVLYSEIGRILSHLLNV----------------------------TTQAMDVGA 125
+ I L + H + + A + G
Sbjct: 103 PLAEWIINLGEAAEYMFDHCIYQENLVGVDYCEKMVGETNPEVLELAWATESPHADEHGY 162
Query: 126 LTP--------------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
T + G +H + PGGV +L
Sbjct: 163 RTIGDIMHALNPIEGEFYREALGMSRLTREMFCLMEGRHVHPSTLYPGGVGTVASVQLFT 222
Query: 172 DIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDL 231
D + L + + F + + G G +
Sbjct: 223 DYLTRLMRYIEFLKRVVPMHDDLFDFFYKALPGYEEVGRRRILLGCWGAFNEPERCDFTY 282
Query: 232 RKSQPYECYSELDFDIPI 249
R + + + +
Sbjct: 283 RNMADWGRSMFVTPGVVV 300
Score = 65.7 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 11/100 (11%), Positives = 21/100 (21%), Gaps = 21/100 (21%)
Query: 314 HFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ------- 366
H K + EA +G ++I + P +
Sbjct: 473 HSKTWESFDVPDEAVSCGFTEAVRGVLSHHMIIR-DGRIANYHPYPPTPWNASVRDVFGT 531
Query: 367 --AMEFLCKGHQL-----------ADVSAILGSLDIVFGE 393
E + + D+ + S D
Sbjct: 532 PGPYEDAVQNTPIFEQNPPESFKGIDIMRTVRSFDPCLPC 571
>gi|156938154|ref|YP_001435950.1| nickel-dependent hydrogenase, large subunit [Ignicoccus hospitalis
KIN4/I]
gi|156567138|gb|ABU82543.1| nickel-dependent hydrogenase, large subunit [Ignicoccus hospitalis
KIN4/I]
Length = 664
Score = 67.7 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 49/165 (29%), Gaps = 13/165 (7%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVD----PHIGLLHRGTEKLIETK 56
+ + K + I P G L L E+D V + RG E + +
Sbjct: 26 VKRIKGNTAEIFIDPIT-RIEGHLGLKAEVD---VTSRKTTNTWVFATMFRGFEVFMRGR 81
Query: 57 TFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYS-EIGRILSHLLN 115
A+ R+ V + +A +A + LG G ++R + + H +
Sbjct: 82 PPEDAIAISSRVCGVCGASHANAATMATDMALGAVPTPLGVVLRNMAFVMTDLLYDHAII 141
Query: 116 VTTQAMDVGALTPPLW----GFEEREKLMVFYERASGSRMHAAYF 156
+ + +E + Y G R A
Sbjct: 142 LNLLGGPDYSEVAVSKLTPSCWEAAKTTPAEYSAVHGYRTIADIM 186
Score = 62.7 bits (151), Expect = 9e-08, Method: Composition-based stats.
Identities = 11/105 (10%), Positives = 23/105 (21%), Gaps = 40/105 (38%)
Query: 329 VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH------------------------ 364
+ +E P+G +++ + +I AP +
Sbjct: 535 GFGQLEVPRGNVEHWIVVK-NGRIANYQIHAPTTQNVGPRAPKGELARYCANEPWVTKSP 593
Query: 365 ----LQAMEFLCKGHQLA-----------DVSAILGSLDIVFGEV 394
L E ++ D + S D
Sbjct: 594 EGYCLSPFEAAALHTVVSEEVEPEKWTGLDYVRAIRSFDPCIACA 638
>gi|126460184|ref|YP_001056462.1| nickel-dependent hydrogenase, large subunit [Pyrobaculum
calidifontis JCM 11548]
gi|126249905|gb|ABO08996.1| nickel-dependent hydrogenase, large subunit [Pyrobaculum
calidifontis JCM 11548]
Length = 638
Score = 67.7 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 44/145 (30%), Gaps = 8/145 (5%)
Query: 20 AHGVLRLILELDGEI--VERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQE 77
G L L E+D V + + ++ RG E + + A+ R V
Sbjct: 14 IEGHLALYAEVDANTRRVGKAHTSV-MMFRGFEVFLRGRPPEDAIAITSRTCGVCGAAHA 72
Query: 78 HAYALAVEKLLGIEIPIRGQLIRVLYSEIG-RILSHLLNVTTQAMDVGALTPPLW----G 132
+A A + G G ++R L + H L + +
Sbjct: 73 NASTRACDIASGFTPYPMGSVLRNLAYAMTDYTYDHPLILNMLEGPDYSEAIVSKLTPSV 132
Query: 133 FEEREKLMVFYERASGSRMHAAYFR 157
++ ++ Y G R A R
Sbjct: 133 WKIAQETPAKYSDIHGYRTIADIMR 157
Score = 54.2 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 9/92 (9%), Positives = 21/92 (22%), Gaps = 28/92 (30%)
Query: 330 YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA----------------MEFLCK 373
+ + P+G +L+ + + AP ++ E
Sbjct: 522 FGWHQVPRGNCMHWLV-QQNGRIVNYQYEAPTTPNVSPRNNRCTDPWKNQCAGPFEMSVI 580
Query: 374 GHQLA-----------DVSAILGSLDIVFGEV 394
+ D+ + S D
Sbjct: 581 NSVVTEEVPPDQWTGLDLVRAIRSFDPCLACA 612
>gi|119871715|ref|YP_929722.1| nickel-dependent hydrogenase, large subunit [Pyrobaculum islandicum
DSM 4184]
gi|119673123|gb|ABL87379.1| nickel-dependent hydrogenase, large subunit [Pyrobaculum islandicum
DSM 4184]
Length = 638
Score = 67.7 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 43/286 (15%), Positives = 75/286 (26%), Gaps = 54/286 (18%)
Query: 20 AHGVLRLILELDGEI--VERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQE 77
G L L E+D V+ + + RG E + + A R V
Sbjct: 14 IEGHLALYAEIDTGTRAVKTARTTV-MAFRGFEVFLRGRPPEDAPHIVSRTCGVCGAAHA 72
Query: 78 HAYALAVEKLLGIEI-PIRGQLIRVLYSEIGRILSHLLNVTTQ----------------- 119
+A +A + G+ P+ L + YS I H L +
Sbjct: 73 NASVIACDIAAGMTPYPMGSVLRTLAYSMTDYIYDHPLILNMLEGPDYSEVIISKLTPSV 132
Query: 120 -----------AMDVGALT--------------PPLWGFEEREKLMVFYERASGSRMHAA 154
G T + + G H +
Sbjct: 133 WKVAQETPANYTAIHGYRTIADIMKDLNPITGKIWQLTVKYQRIAREAGALIYGRHAHPS 192
Query: 155 YFRPGGVHQDIP--PELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDA 212
PGG+ DI P L+++ + + + + F + +V K
Sbjct: 193 TLIPGGISTDITNLPSLLQEYYARLSQLTAWVKFVWAVWQDLYEFYRDHVTTPDGKPYAT 252
Query: 213 WGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDR 258
+ +G D + YS + + G + Y R
Sbjct: 253 TQGKTHDPPVMLAGGFADDPE-----VYSNITDEAR-GNWRELYAR 292
Score = 53.8 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 10/92 (10%), Positives = 22/92 (23%), Gaps = 28/92 (30%)
Query: 330 YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA----------------MEFLCK 373
+ + P+G +L+ G + + AP ++ E +
Sbjct: 522 FGWWQVPRGNCMHWLVQKG-GRIVNYQYEAPTTPNVSPSNNRCTDPWKGQCAGPFEMSVR 580
Query: 374 GHQLA-----------DVSAILGSLDIVFGEV 394
+ D + S D
Sbjct: 581 NSVVTEELPPDQWTGLDQVRAIRSFDPCLACA 612
>gi|296537036|ref|ZP_06899026.1| hydrogenase subunit [Roseomonas cervicalis ATCC 49957]
gi|296262637|gb|EFH09272.1| hydrogenase subunit [Roseomonas cervicalis ATCC 49957]
Length = 192
Score = 67.7 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 27/69 (39%)
Query: 327 GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGS 386
E VE +GE +L D + R P + H + +E G ++ D + S
Sbjct: 123 AEGLGLVEGFRGEVLCWLSLDEAGRIRAAFPRDPSWLHWRLLEAAMAGMEVGDAALCRAS 182
Query: 387 LDIVFGEVD 395
L+ VD
Sbjct: 183 LNPSVAGVD 191
>gi|207093136|ref|ZP_03240923.1| quinone-reactive Ni/Fe hydrogenase, large subunit (hydB)
[Helicobacter pylori HPKX_438_AG0C1]
Length = 86
Score = 67.3 bits (163), Expect = 4e-09, Method: Composition-based stats.
Identities = 8/60 (13%), Positives = 14/60 (23%), Gaps = 15/60 (25%)
Query: 349 GNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VSAILGSLDIVFGE 393
+ P + A E G ++AD + + S D
Sbjct: 3 NGVVENYQAVVPSTWNAGPRDSQNQRGAYEMSLIGTKIADLTQPLEIIRTIHSFDPCIAC 62
>gi|303246897|ref|ZP_07333173.1| Cytochrome-c3 hydrogenase [Desulfovibrio fructosovorans JJ]
gi|302491604|gb|EFL51487.1| Cytochrome-c3 hydrogenase [Desulfovibrio fructosovorans JJ]
Length = 553
Score = 66.9 bits (162), Expect = 6e-09, Method: Composition-based stats.
Identities = 23/213 (10%), Positives = 44/213 (20%), Gaps = 24/213 (11%)
Query: 203 NIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVR 262
+ G + + G W + + +G Y
Sbjct: 327 DPGWAERDKDRYRLRFGPGETA--YHWRNDDFRWFSAPRHAGRACEVGPVARIVGAYGRA 384
Query: 263 MMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD-MKRSMESLIHHFKLYTEG 321
+RE + LG I + + L
Sbjct: 385 NAMVRELADAALTALGLPLGALDSVIGRVLARGIESVACIRSVTAWLGDLDRCLDAENPV 444
Query: 322 YHVP-----VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------A 367
VP GE E +G + + + P +
Sbjct: 445 LQVPFTLPDSGEGIGLAELTRGALVHRIRLR-NRRIVAHEALVPSLWNFSPRSGDGIPGP 503
Query: 368 MEFLCKGHQLAD------VSAILGSLDIVFGEV 394
+E +AD + ++ + D V
Sbjct: 504 LERALLDIPVADPANPLELLRVIHTFDPCNACV 536
Score = 50.3 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
Query: 51 KLIETKTFL-------QAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLY 103
K++ +L + + R + A A+E+L+GI +P +L R +
Sbjct: 38 KMLHNMNYLLGARLSGEESFFAQRPHCLCNAGHALAATRALERLIGIRLPESARLARNIV 97
Query: 104 SEIGRILSHLLNVTTQAMDV 123
+ +L HL + +
Sbjct: 98 HALQYLLDHLTHFYLFYSND 117
>gi|145591511|ref|YP_001153513.1| nickel-dependent hydrogenase, large subunit [Pyrobaculum
arsenaticum DSM 13514]
gi|145283279|gb|ABP50861.1| nickel-dependent hydrogenase, large subunit [Pyrobaculum
arsenaticum DSM 13514]
Length = 638
Score = 66.5 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 1/81 (1%)
Query: 45 LHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYS 104
+ RG E + + A+ R V +A A + G+ G ++R L
Sbjct: 40 MFRGFEVFLRGRPPEDAIAITSRSCGVCGAAHANASTRACDAAAGMTPLPMGNVLRNLAY 99
Query: 105 EIG-RILSHLLNVTTQAMDVG 124
+ H L +
Sbjct: 100 AMTDYTYDHPLILNMLEGPDY 120
Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 9/92 (9%), Positives = 23/92 (25%), Gaps = 28/92 (30%)
Query: 330 YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA----------------MEFLCK 373
+ + P+G +L+ + + AP ++ E +
Sbjct: 522 FGWWQVPRGNCMHWLV-QQNGRLANYQYEAPTTPNVSPTNNRCTDPWKGQCAGPFEMSVR 580
Query: 374 GHQLA-----------DVSAILGSLDIVFGEV 394
++ D+ + S D
Sbjct: 581 NSKVTEEVPPDQWTGLDLVRAIRSFDPCLACA 612
>gi|1346328|sp|P28153|HUPK_RHILV RecName: Full=Hydrogenase expression/formation protein hupK
gi|48731|emb|CAA37158.1| hupK [Rhizobium leguminosarum]
gi|536808|emb|CAA85440.1| HUPK [Rhizobium leguminosarum]
Length = 370
Score = 66.5 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 50/358 (13%), Positives = 87/358 (24%), Gaps = 42/358 (11%)
Query: 47 RGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEI 106
RG ++ + +A ++ + Q A LAV + + +L
Sbjct: 32 RGLTRMFVGRQPEEAPVLAGQVFSLCGFAQSVAARLAVLAAADLAMNDEERLGASAGLLA 91
Query: 107 GRILSHLLNVTTQAMDVGALTPPLWGFE-EREKLMVFYERASGSRMHAAYFRPGGVHQDI 165
RI L + Q RE L S HA R
Sbjct: 92 ERIFETLRALILQWPTPLPERFAADAGRHLREALAASLAIIS----HAKAGRTSRPRLAA 147
Query: 166 PPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGS 225
E + + + I +D G + S
Sbjct: 148 AAERLSAAATALGIPGRG---------DTPLPETACAAILRDVEDDHVFAGRRPDPLTIS 198
Query: 226 GAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNK 285
A + + + Y+ L G+ + + E+ + R+ R+
Sbjct: 199 DDAEVVARLRDEAGYASLPH--LSGRIAETGAYARSASAGLPEAPHLARRLRARIGDVRI 256
Query: 286 VGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLI 345
+ + A + S G G Y AVE +G +
Sbjct: 257 SLTQLTALARTGDFDCASLACS-------------GPTPGAG-GYGAVECARGRLYHQIE 302
Query: 346 SDGGNKPYRCKIRAPGYAHL---QAMEFLCKGHQL-ADVSAILGS-------LDIVFG 392
G + +I AP + + AD A + S D
Sbjct: 303 IGGDGRLAAYRILAPTEWNFHPAGPFVETLLSSPVGAD-EAAVRSISRLAVLFDPCVA 359
>gi|167949485|ref|ZP_02536559.1| hydrogenase large subunit [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 81
Score = 66.1 bits (160), Expect = 9e-09, Method: Composition-based stats.
Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEH 78
G LR+ +++G+ + G + RG E ++ + A Y R+ V +
Sbjct: 24 IEGHLRIEAQMEGDQIASA-YSSGTMVRGIELILRGRDPRDAWAYAQRICGVCTLVHGI 81
>gi|213026184|ref|ZP_03340631.1| formate hydrogenlyase subunit 5 [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
Length = 154
Score = 65.7 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGT 49
++ + GP H + L +DGE + D + +HRG
Sbjct: 110 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGM 154
>gi|213025699|ref|ZP_03340146.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Typhi str. 404ty]
Length = 60
Score = 65.7 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHA 79
G LR+ E++ +V + G + RG E++++ + A R+ V +
Sbjct: 1 MEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHAIS 59
Query: 80 Y 80
Sbjct: 60 S 60
>gi|58042489|gb|AAW63685.1| NADH dehydrogenase subunit 7 [Nymphaea sp. Bergthorsson 0401]
Length = 80
Score = 65.7 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 40/84 (47%), Positives = 55/84 (65%), Gaps = 4/84 (4%)
Query: 227 AAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKV 286
WDLR++ PY+ + + D D+P+G GD YDRY +R+ EMR+SV+II QC N++
Sbjct: 1 VCWDLRRAAPYDVHDQSDPDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQCPNQM----PS 56
Query: 287 GPVSASDPKIVPPKRADMKRSMES 310
G + A D K+ PP R MK SMES
Sbjct: 57 GMIKADDRKLCPPSRCRMKLSMES 80
>gi|288921360|ref|ZP_06415641.1| Cytochrome-c3 hydrogenase [Frankia sp. EUN1f]
gi|288347271|gb|EFC81567.1| Cytochrome-c3 hydrogenase [Frankia sp. EUN1f]
Length = 598
Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 9/100 (9%), Positives = 21/100 (21%), Gaps = 21/100 (21%)
Query: 314 HFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ------- 366
H + + EA +G +++ + P +
Sbjct: 475 HTRTWEPFDVPQDAVSCGFTEAVRGVLSHHMVIR-DGRIANYHPYPPTPWNASVRDVFGT 533
Query: 367 --AMEFLCKGHQL-----------ADVSAILGSLDIVFGE 393
E + + D+ + S D
Sbjct: 534 PGPYEDAVQNTPIFENNPPESFKGIDIMRTVRSFDPCLPC 573
Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/258 (12%), Positives = 57/258 (22%), Gaps = 43/258 (16%)
Query: 34 IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIP 93
V + RG ++ K A R+ + N A G++ P
Sbjct: 46 RVVECH-STSSIFRGYSIFMKDKDPRDAHFITSRICGICGDNHATCSVYAQNMAYGVKPP 104
Query: 94 IRGQLIRVLYSEIGRILSH------LLNVTTQAMDVGALTP------------------- 128
G+ I L + H L+ V VG P
Sbjct: 105 HLGEWIINLGEAAEYMFDHNIYQENLVGVDYCEKMVGETNPEVLELARRTESPNADQHGY 164
Query: 129 -----------------PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
+ G +H + PGGV +L
Sbjct: 165 RTIGDIMHALNPIEGEFYREALAMSRVTREMFCLMEGRHVHPSTLYPGGVGTVASVQLFT 224
Query: 172 DIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDL 231
D + L + + F + G G + +
Sbjct: 225 DYLTRLMRYIEFLKRVVPMHDDLFDFFYEALPGYEEVGRRRVLLGCWGSFNDPAHCDFTY 284
Query: 232 RKSQPYECYSELDFDIPI 249
R + + + + I
Sbjct: 285 RNMADWGRHMFVTPGVII 302
>gi|327312077|ref|YP_004338974.1| Ni,Fe-hydrogenase I large subunit [Thermoproteus uzoniensis 768-20]
gi|326948556|gb|AEA13662.1| Ni,Fe-hydrogenase I large subunit [Thermoproteus uzoniensis 768-20]
Length = 639
Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/265 (11%), Positives = 55/265 (20%), Gaps = 53/265 (20%)
Query: 45 LHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYS 104
+ RG E + + A+ R V +A A + G+ G ++R +
Sbjct: 40 MFRGFEVFLRGRPPEDAIHITSRTCGVCGAAHANASTRACDAAAGMTPLPMGNVLRNMAY 99
Query: 105 EIG-RILSHLLNVTTQAMDV----------------------------GALT-------- 127
+ H + + G T
Sbjct: 100 AMTDYTYDHSIILNMLEGPDYSEAIVSKLTPSVWETAKSTPANYSSIHGYRTIADIMRDL 159
Query: 128 ------PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIP------PELVEDIGC 175
+ + G H + PGG+ DI E +
Sbjct: 160 NPIQGRIWQLTVKHQRIAREAGVLIYGRHSHPSTLIPGGISTDITLLGSLLQEYYTRLSL 219
Query: 176 WCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQ 235
DL R + ++ SG + D
Sbjct: 220 LTAWVKFVWAIWQDLYEFFRDHVSTPDGQSYALTQGKTH---DPPVLLASGWSDDPEVYS 276
Query: 236 P-YECYSELDFDIPIGKHGDCYDRY 259
Y+ + R+
Sbjct: 277 GIYDEAGGDWVKLYSLLDKAYNARW 301
Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 10/92 (10%), Positives = 21/92 (22%), Gaps = 28/92 (30%)
Query: 330 YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA----------------MEFLCK 373
+ + P+G +L+ K + AP ++ E
Sbjct: 523 FGWWQVPRGNCMHWLV-QQNGKIANYQYEAPTTPNVSPQNSRCTDPWKNQCRGPFEMSVI 581
Query: 374 GHQLA-----------DVSAILGSLDIVFGEV 394
++ D + S D
Sbjct: 582 NSKVTEEVPPDQWTGLDFVRAIRSFDPCLACA 613
>gi|326561157|gb|EGE11522.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Moraxella
catarrhalis 7169]
gi|326572772|gb|EGE22758.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Moraxella
catarrhalis BC7]
gi|326574008|gb|EGE23957.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Moraxella
catarrhalis CO72]
gi|326577023|gb|EGE26918.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Moraxella
catarrhalis 101P30B1]
Length = 46
Score = 65.0 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 353 YRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
YR +IR P +AHLQ M + G ++D L S+DIV + DR
Sbjct: 3 YRTRIRTPTFAHLQQMPSVINGSLVSDAIIYLASIDIVMADCDR 46
>gi|301061312|ref|ZP_07202094.1| NADH dehydrogenase, C subunit [delta proteobacterium NaphS2]
gi|300444631|gb|EFK08614.1| NADH dehydrogenase, C subunit [delta proteobacterium NaphS2]
Length = 484
Score = 65.0 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRG 48
K + +N GP H + HG++R IL GE + +D IG HRG
Sbjct: 404 KGDEEYLLNIGPHHVSTHGLMRFILLCRGEEIRGLDMDIGYHHRG 448
>gi|171184882|ref|YP_001793801.1| nickel-dependent hydrogenase large subunit [Thermoproteus
neutrophilus V24Sta]
gi|170934094|gb|ACB39355.1| nickel-dependent hydrogenase large subunit [Thermoproteus
neutrophilus V24Sta]
Length = 638
Score = 64.6 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 33/117 (28%), Gaps = 5/117 (4%)
Query: 45 LHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYS 104
+ RG E + + A R V +A A + G+ G ++R L
Sbjct: 40 MFRGFEVFLRGRPPEDAPHIVSRTCGVCGAAHANASVRACDVAAGMTPYPMGNVLRTLAY 99
Query: 105 EIG-RILSHLLNVTTQAMDVGALTPPLW----GFEEREKLMVFYERASGSRMHAAYF 156
+ H L + + ++ ++ Y G R A
Sbjct: 100 AMTDYTYDHPLILNMLEGPDYSEAIVSKLTPSVWKIAQETPAQYSAIHGYRTIADIM 156
Score = 53.8 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 10/92 (10%), Positives = 22/92 (23%), Gaps = 28/92 (30%)
Query: 330 YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA----------------MEFLCK 373
+ + P+G +L+ G + + AP ++ E +
Sbjct: 522 FGWWQVPRGNCMHWLVQKG-GRIVNYQYEAPTTPNVSPSNNRCTDPWKGQCAGPFEMSVR 580
Query: 374 GHQLA-----------DVSAILGSLDIVFGEV 394
+ D + S D
Sbjct: 581 NSVVTEELPPDQWTGLDQVRAIRSFDPCLACA 612
>gi|316931892|ref|YP_004106874.1| hydrogenase expression/formation [Rhodopseudomonas palustris DX-1]
gi|315599606|gb|ADU42141.1| hydrogenase expression/formation [Rhodopseudomonas palustris DX-1]
Length = 369
Score = 64.6 bits (156), Expect = 3e-08, Method: Composition-based stats.
Identities = 54/380 (14%), Positives = 104/380 (27%), Gaps = 58/380 (15%)
Query: 32 GEIVERVDPHIGLLHR---GTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLL 88
G+ V R+D R G +L + K+ V RL + Q A A A+
Sbjct: 18 GDRVVRLDITA----RRPIGIGRLAQGKSGETVVALVPRLFALCASAQGVAAAQALAAAR 73
Query: 89 GIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASG 148
GI + R++ L G+ +
Sbjct: 74 GISPSPAIVAAQASAVLAERMIELLRGTVLLLGGGGSPSLTHHL---------------- 117
Query: 149 SRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVK 208
R RP + + + I ++ A +D + R + ++ + +
Sbjct: 118 -RDLTIAARPRDPAAPLDDDAISRIAQGLEALGLAPRSFAD-VAACRRWLGSDMLLAELH 175
Query: 209 LEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRE 268
F G +I P + + G + + E
Sbjct: 176 RPLVAEAEFGGAVI------------DPLTAADDAAIGERLIALGPSFAVRPDLAGRVPE 223
Query: 269 SVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIH------HFKLYTEGY 322
+ + R + + + ++ + E L +
Sbjct: 224 TG-----ALARNADHPVIASFGGGLGGRLLARLIEIAATPELLRAVRRGNVDTGTVVQSA 278
Query: 323 HVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---QAMEFLCKGHQL-- 377
+ G AAVE+ +G + D G + +I AP + + G L
Sbjct: 279 PLGAGIGLAAVESARGRLHHLIALDAGGAIRQFEILAPTEWNFHPEGPLARALVGTNLRA 338
Query: 378 --AD---VSAILGSLDIVFG 392
D V+A++ + D G
Sbjct: 339 TEPDRQRVAALVAAFDPCVG 358
>gi|289064357|gb|ADC80553.1| bidirectional NAD(P)-linked NiFe hydrogenase [uncultured
Rhodocyclaceae bacterium]
Length = 261
Score = 64.2 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/187 (12%), Positives = 52/187 (27%), Gaps = 28/187 (14%)
Query: 68 LDYVAPMNQEHAYALAVEKLLGIEI---PIRGQLIRVLYSEIGRILSHLLNVTTQ----- 119
+ + P++ A A A+++++GI+ +R L SH L+
Sbjct: 3 ICGICPVSHHLAAAKAIDQIVGIDPDDLSPTASKLRRLLHYGQIFQSHALHFFYLASPDL 62
Query: 120 --------------AMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDI 165
+ + G R+ + +G ++H GGVH+
Sbjct: 63 LFGVDAPVEQRNVVHVALKNKELARKGILMRKFGQELIKALAGKKIHGITAVSGGVHKTF 122
Query: 166 PPELVEDIGCW-----CDSFPSALNDISDLLTG-NRIFKQRNVNIGTVKLEDAWGWGFSG 219
+ D+ ++ D + + + SG
Sbjct: 123 TKDERAYFLAENDTPSVDTMIKWSLEMVDFIQDYHAKNHLWLDAFASFPSGSLGMVKPSG 182
Query: 220 VMIRGSG 226
+ G
Sbjct: 183 QLDLYDG 189
>gi|167742572|ref|ZP_02415346.1| putative hydrogenase subunit [Burkholderia pseudomallei 14]
Length = 57
Score = 64.2 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 21/52 (40%)
Query: 344 LISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
L D RC P + + A+E G+ +AD I S ++ + D
Sbjct: 5 LELDARGAVARCHCHDPSWHNWPALEHAIIGNIVADFPLINKSFNLNYAGHD 56
>gi|83310743|ref|YP_421007.1| Ni,Fe-hydrogenase I large subunit [Magnetospirillum magneticum
AMB-1]
gi|82945584|dbj|BAE50448.1| Ni,Fe-hydrogenase I large subunit [Magnetospirillum magneticum
AMB-1]
Length = 367
Score = 64.2 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 53/351 (15%), Positives = 91/351 (25%), Gaps = 39/351 (11%)
Query: 53 IETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSH 112
+ + Q + L + Q A AVE +GI+ R + I H
Sbjct: 36 LTGRRPDQVLALLPNLYSLCGTAQGLAGLAAVENAVGIDAAPEQHKARRILCLIEMAAEH 95
Query: 113 LLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVED 172
+ P L + L++ +A + PGG E +
Sbjct: 96 AAAALRDWPALLGEAPDLVALKPIRPLIMAVRKAL--YPEGDWLAPGGGRLAPDRETLTG 153
Query: 173 IGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLR 232
I S + ++D L R+ G +G + A D
Sbjct: 154 IVHRLGEAASRGDLVADRLLA-RVEDLGMEGFGAAPPNLMP---ETGPPDLDARLAADDD 209
Query: 233 KSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKV--GPVS 290
Y + E+ + RQ L+G G
Sbjct: 210 ---------------------GAYRTRPDSAGIVFETGPLARQSRRPLMGLLMSQYGNGL 248
Query: 291 ASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP--VGEVYAAVEAPKGEFGVYLISDG 348
+ A R +E L+ + G + G V+A +G +
Sbjct: 249 MPRFSARMMEMASALREVEDLVQDLSGDSGGLPMARHDGSGLGVVDAARGLLAHRVELRE 308
Query: 349 GNKPYRCKIRAPGYAHL---QAMEFLCKGHQLAD----VSAILGSLDIVFG 392
+I AP + + +G D + + SLD
Sbjct: 309 -GLLSAYRILAPTEWNFHPDGPLAQGLRGMSGPDPEGRAALLAASLDPCVP 358
>gi|21307615|gb|AAK55745.1| uptake Ni/Fe-hydrogenase large subunit [Photobacterium damselae]
Length = 455
Score = 63.8 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 44/385 (11%), Positives = 72/385 (18%), Gaps = 111/385 (28%)
Query: 100 RVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPG 159
L + T ++ L+ L E + G H G
Sbjct: 77 GNLGPFANAYWGNPTYKFTPEQNLIGLSHYLKALEIQRIAAECMALWGGKNPHPQSIVVG 136
Query: 160 GVHQDIPPELVEDIGCWCDSFPSALN-----DISDLLTGNRIFKQRNVNIGTVKLEDAW- 213
GV + + F +DL+ + + +G +
Sbjct: 137 GVTCVRDMLDPARLQEFKQKFQHVAEFVERAYYADLVMAAKAYATSPDVLGGCNVHTFMA 196
Query: 214 ------------------------GWGFSGVMIRGSGAAWDLRK-SQPYECYSELDFDIP 248
+ QP Y
Sbjct: 197 AESILLNPDDHLFTDGVIRNCDLSHAENVDPSLIEEDVTHAWYDAKQPQHPYDGTTIPEK 256
Query: 249 I----------------GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPV--- 289
+ + E E + VN G V V
Sbjct: 257 TPFVQRETLMGNIPTINEAGKYSWVKSPRYNGEPVEVGPLATIAVNYARGNKPVVDVVDE 316
Query: 290 ---------------------SASDPKIVPPKRADMKRSMES-LIHHFKLYTEGYHVPVG 327
++ + SM + L Y + P
Sbjct: 317 FLTKTGLPAQALFTTLGRTAARMLHTTVIARHGLETFESMVANLNSDQTTYIKPTIDPDK 376
Query: 328 E--VYAAVEAPKGEFGVYLIS-----------DGGNKPYRCKIRAPGYAHLQAMEFLCKG 374
E +EAP L S DG + E G
Sbjct: 377 EYKGVGILEAP-------LSSGCPNNLERWPYDGNGRI-------------GPYEASLVG 416
Query: 375 HQLAD------VSAILGSLDIVFGE 393
+LA+ + I+ S D
Sbjct: 417 LKLAEPTKPLEILRIIHSFDPCMAC 441
>gi|20094638|ref|NP_614485.1| Ni,Fe-hydrogenase I large subunit [Methanopyrus kandleri AV19]
gi|19887793|gb|AAM02415.1| Ni,Fe-hydrogenase I large subunit [Methanopyrus kandleri AV19]
Length = 205
Score = 62.3 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 13/112 (11%), Positives = 24/112 (21%), Gaps = 21/112 (18%)
Query: 304 MKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
++ L Y + +EAP+G + K + +I
Sbjct: 38 ALHWIDDLPTTGTTYKDPSRRSGCSGTGVIEAPRGTLVHRVSVGSDGKVFNYEIITSTNL 97
Query: 364 HLQAMEFLCKGH---------------------QLADVSAILGSLDIVFGEV 394
+ +E G L D S +
Sbjct: 98 NHAPIEESMVGERVYVDEKLAAAKRQLSESERFLLGDACRAARSFNPCNSCA 149
>gi|269861827|ref|XP_002650595.1| uptake hydrogenase large subunit [Enterocytozoon bieneusi H348]
gi|220065909|gb|EED43463.1| uptake hydrogenase large subunit [Enterocytozoon bieneusi H348]
Length = 276
Score = 62.3 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/174 (13%), Positives = 41/174 (23%), Gaps = 38/174 (21%)
Query: 236 PYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPK 295
P + E I + + + E+ R L G + + +
Sbjct: 94 PGSEHEENGHMIGTVNDRYTWSKGPSYDGKCMEAGPFSRVLAAYLRGGEQNKFIVDNLNA 153
Query: 296 IV------------------------PPKRADMKRSMESLIHHFKL-YTEGYHVPV---G 327
+ M ++ LI K +E + P G
Sbjct: 154 LCADLGLTIPDLQSTLGRVAARQVECLYVAELMVEWVDELIAAIKEGDSEYFRAPERLSG 213
Query: 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLC 372
EAP+G D K +I P ++ ME
Sbjct: 214 RGTGMWEAPRGALLHTENVD-NGKINAYQIIIPTTWNIAPRNAEGVRGPMEQAL 266
>gi|195191709|ref|XP_002029572.1| GL16671 [Drosophila persimilis]
gi|194103728|gb|EDW25771.1| GL16671 [Drosophila persimilis]
Length = 127
Score = 62.3 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVER 37
+K R+ T+NFGPQHPAAHGVLRL+LELDGE+ R
Sbjct: 84 EKSVRNLTLNFGPQHPAAHGVLRLVLELDGEVSVR 118
>gi|289808847|ref|ZP_06539476.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Typhi str. AG3]
Length = 77
Score = 61.9 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 7/52 (13%), Positives = 13/52 (25%), Gaps = 1/52 (1%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
+ + EAP+G G + K + P +
Sbjct: 17 EKWEPASWPQHCRGIGFTEAPRGALGHWASIR-DQKIELYQCVVPTTWNATP 67
>gi|91975652|ref|YP_568311.1| coenzyme F420-reducing hydrogenase alpha subunit-like
[Rhodopseudomonas palustris BisB5]
gi|91682108|gb|ABE38410.1| Coenzyme F420-reducing hydrogenase alpha subunit-like
[Rhodopseudomonas palustris BisB5]
Length = 370
Score = 61.9 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 51/378 (13%), Positives = 108/378 (28%), Gaps = 41/378 (10%)
Query: 26 LILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVE 85
+ + L G V R++ G G +L + ++ V RL + Q A A+
Sbjct: 12 ISVVLSGGRVSRIEIT-GRRPIGMSRLAQGRSGEAVVALAPRLFALCAAAQGVAAVHALA 70
Query: 86 KLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYER 145
G + + R++ LL T + AL + +++
Sbjct: 71 AARGESVFADTAAAQASAVLAERLVE-LLRGTITTLAGDALPAWAPLLRDVIAAARRFDQ 129
Query: 146 ASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIG 205
A + + ++ I D+ + D R + +
Sbjct: 130 AG----------------LLEADAIDAIERGLDALGLPAGCVDD-ADACRDWLASAAPVA 172
Query: 206 TVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMME 265
+ G +P + + +HG +
Sbjct: 173 ELHRPLLGEEAEFGACA-----------VEPLTDSDDHAIGEQLLRHGASFALRPDIAGR 221
Query: 266 MRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA-DMKRSMESLIHHFKLYTEGYHV 324
+ E+ + RQ ++ L+ G +++ + D R++ + + +
Sbjct: 222 VPETGSLARQALHPLIQSYGTGLAGRLLARLIEIRATPDRLRALRNGHSDVADIMQATRL 281
Query: 325 PVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---QAMEFLCKGHQL---- 377
G AAVE +G + D + I AP + + G L
Sbjct: 282 GDGLGLAAVECARGRLHHLIALDSNGLIRQFDILAPTEWNFHPQGPLARSLTGQALRATD 341
Query: 378 ---ADVSAILGSLDIVFG 392
+ V ++ + D G
Sbjct: 342 DDRSRVERLVAAFDPCVG 359
>gi|453388|gb|AAA73418.1| NADH dehydrogenase subunit 7 [Strigomonas culicis]
Length = 71
Score = 61.9 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 7/74 (9%)
Query: 326 VGEVYAAVEAPKGE---FGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSA 382
G +A++E PKGE +L R +IR + H+ ++ + +G L D+ A
Sbjct: 2 PGISFASIEHPKGEYCLLLCFLX----GFISRLRIRCADFIHICLLDVMIRGFMLHDLVA 57
Query: 383 ILGSLDIVFGEVDR 396
I+G++D+VFG VDR
Sbjct: 58 IIGNVDVVFGSVDR 71
>gi|289064363|gb|ADC80555.1| bidirectional NAD(P)-linked NiFe hydrogenase [uncultured
Rhodobacteraceae bacterium]
Length = 237
Score = 61.9 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 46/130 (35%), Gaps = 22/130 (16%)
Query: 68 LDYVAPMNQEHAYALAVEKLLGI---EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV- 123
+ + P++ A A+++++G+ + G+ +R + + SH L+ A
Sbjct: 1 ICGICPVSHHLCAAKAIDQIVGVNDETLTATGRKMRRMMHYGQVLQSHALHYFYLAAPDL 60
Query: 124 ------------------GALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDI 165
G R+ + +G ++H PGG+H+++
Sbjct: 61 LLGMNSDVASRNVVGLAQMNQELAKKGILLRKFGQEIIKATAGKKIHGISAVPGGIHKNM 120
Query: 166 PPELVEDIGC 175
+ ++
Sbjct: 121 SDDEIQFFKD 130
>gi|213024919|ref|ZP_03339366.1| hypothetical protein Salmonelentericaenterica_21568 [Salmonella
enterica subsp. enterica serovar Typhi str. 404ty]
Length = 77
Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 359 APGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
P + ++ +G+ ++D I+GSLD + DR
Sbjct: 12 TPT----ATLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 45
>gi|224077592|ref|XP_002305318.1| predicted protein [Populus trichocarpa]
gi|222848282|gb|EEE85829.1| predicted protein [Populus trichocarpa]
Length = 70
Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/64 (51%), Positives = 40/64 (62%)
Query: 221 MIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRL 280
M+R SG WDLRK YECY E D+ + K GD RYLVR+ EM ESVKII+Q + +
Sbjct: 1 MLRASGVRWDLRKVDHYECYDEFDWGVQWQKEGDSLARYLVRIGEMTESVKIIQQALEGI 60
Query: 281 LGKN 284
G
Sbjct: 61 PGGP 64
>gi|90425247|ref|YP_533617.1| putative hydrogenase expression/formation protein HupK
[Rhodopseudomonas palustris BisB18]
gi|90107261|gb|ABD89298.1| putative hydrogenase expression/formation protein HupK
[Rhodopseudomonas palustris BisB18]
Length = 373
Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 9/76 (11%)
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---QAMEFLCKGHQL-ADVS 381
G +AAVE +G ++ + R +I AP + + G D
Sbjct: 287 PGIGFAAVECARGRLHHWIALSADGRIARLEILAPTEWNFHPQGPLARALHGAAARTDAE 346
Query: 382 A-----ILGSLDIVFG 392
++ + D G
Sbjct: 347 RRSIEQLIAAFDPCVG 362
>gi|83630697|gb|ABC26862.1| HupK [Bradyrhizobium sp. UPM1167]
Length = 360
Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 47/139 (33%), Gaps = 10/139 (7%)
Query: 264 MEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR-ADMKRSMESLIHHFKLYTEGY 322
E+ RQ + L + GPV +I R D +S + E Y
Sbjct: 214 GRAPETGPWARQMTHERLWLGRSGPVERLKARIAEIVRLCDWLKSGAHIDAAEPGIVESY 273
Query: 323 HVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---QAMEFLCKGHQLA- 378
+ AAVE +G + D + YR + AP + + +G L
Sbjct: 274 RLGPRRAAAAVECARGRLYHAVELDPQGQIYRFEFLAPTEWNFHRRGPLVRNLQGAVLTA 333
Query: 379 -----DVSAILGSLDIVFG 392
V A++ SLD G
Sbjct: 334 RRHQKAVRAVIDSLDPCLG 352
>gi|296446737|ref|ZP_06888676.1| nickel-dependent hydrogenase large subunit [Methylosinus
trichosporium OB3b]
gi|296255740|gb|EFH02828.1| nickel-dependent hydrogenase large subunit [Methylosinus
trichosporium OB3b]
Length = 344
Score = 60.0 bits (144), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/156 (15%), Positives = 39/156 (25%), Gaps = 23/156 (14%)
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
+ GD + R E+ R V + +A M +
Sbjct: 188 RRDGDGFSREPQITGRAPETGAFARHW----------REVDFGHGAALARLQARMIDLAD 237
Query: 310 SLIHHFKLYTEGY----HVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
+L + E AAVE +G + +K I AP +
Sbjct: 238 TLARLAEGGAPEPARLSSPVRREGLAAVETARGALYHWARLGDDDKIADYAILAPTEWNF 297
Query: 366 ---QAMEFLCKGHQL-----ADVSAILGS-LDIVFG 392
G ++ AD L + D
Sbjct: 298 HPAGPFVASLLGARISSSSAADTITRLAALFDPCVA 333
>gi|2852662|gb|AAC02191.1| periplasmic (NiFe) hydrogenase large subunit [Desulfovibrio
vulgaris]
Length = 112
Score = 59.6 bits (143), Expect = 9e-07, Method: Composition-based stats.
Identities = 10/56 (17%), Positives = 17/56 (30%)
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
V A V+ +G+ IP IR L + H+++
Sbjct: 2 CGVCTYTHALASTRCVDNAVGVHIPKNATYIRNLVLGAQYLHDHIVHFYHLHALDF 57
>gi|323477036|gb|ADX82274.1| Ni Fe-hydrogenase I large subunit-like protein [Sulfolobus
islandicus HVE10/4]
Length = 752
Score = 59.2 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/114 (16%), Positives = 40/114 (35%), Gaps = 12/114 (10%)
Query: 18 PAAHGVL-RLI--------LELDG-EIVERVDPHIG-LLHRGTEKLIETKTFLQAVPYFD 66
P + R+ + ++G V V+ + G + RG E + K +
Sbjct: 14 PVVIEPIVRIKPELGIQVSVNIEGQNQVRAVEAYAGAGMFRGFEIFMRNKPAPDVIMLSS 73
Query: 67 RLDYVAPMNQEHAYALAVEKLL-GIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ 119
R + + + +A E + G P G +L ++ + H ++T
Sbjct: 74 RECGICGEHHQFIERMAQEMAMGGYAPPPLGLETIMLANDAAMMYDHTAHLTAL 127
>gi|225353042|gb|ACN88250.1| NADH dehydrogenase subunit 7 [Medicago prostrata]
gi|225353044|gb|ACN88251.1| NADH dehydrogenase subunit 7 [Medicago prostrata]
gi|225353046|gb|ACN88252.1| NADH dehydrogenase subunit 7 [Medicago prostrata]
gi|225353048|gb|ACN88253.1| NADH dehydrogenase subunit 7 [Medicago prostrata]
gi|225353050|gb|ACN88254.1| NADH dehydrogenase subunit 7 [Medicago sativa subsp. caerulea]
gi|225353052|gb|ACN88255.1| NADH dehydrogenase subunit 7 [Medicago sativa subsp. caerulea]
gi|225353054|gb|ACN88256.1| NADH dehydrogenase subunit 7 [Medicago sativa subsp. caerulea]
gi|225353056|gb|ACN88257.1| NADH dehydrogenase subunit 7 [Medicago sativa subsp. caerulea]
gi|225353058|gb|ACN88258.1| NADH dehydrogenase subunit 7 [Medicago sativa subsp. caerulea]
gi|225353060|gb|ACN88259.1| NADH dehydrogenase subunit 7 [Medicago sativa subsp. caerulea]
gi|225353062|gb|ACN88260.1| NADH dehydrogenase subunit 7 [Medicago sativa subsp. caerulea]
gi|225353064|gb|ACN88261.1| NADH dehydrogenase subunit 7 [Medicago sativa subsp. caerulea]
gi|225353066|gb|ACN88262.1| NADH dehydrogenase subunit 7 [Medicago sativa subsp. caerulea]
gi|225353068|gb|ACN88263.1| NADH dehydrogenase subunit 7 [Medicago sativa subsp. falcata]
gi|225353070|gb|ACN88264.1| NADH dehydrogenase subunit 7 [Medicago sativa subsp. falcata]
gi|225353072|gb|ACN88265.1| NADH dehydrogenase subunit 7 [Medicago sativa subsp. falcata]
gi|225353074|gb|ACN88266.1| NADH dehydrogenase subunit 7 [Medicago sativa subsp. falcata]
gi|225353076|gb|ACN88267.1| NADH dehydrogenase subunit 7 [Medicago sativa subsp. falcata]
gi|225353078|gb|ACN88268.1| NADH dehydrogenase subunit 7 [Medicago sativa subsp. falcata]
gi|225353080|gb|ACN88269.1| NADH dehydrogenase subunit 7 [Medicago sativa subsp. falcata]
gi|225353082|gb|ACN88270.1| NADH dehydrogenase subunit 7 [Medicago sativa subsp. falcata]
gi|225353084|gb|ACN88271.1| NADH dehydrogenase subunit 7 [Medicago sativa subsp. falcata]
gi|225353086|gb|ACN88272.1| NADH dehydrogenase subunit 7 [Medicago sativa subsp. falcata]
gi|225353088|gb|ACN88273.1| NADH dehydrogenase subunit 7 [Medicago sativa subsp. falcata]
gi|225353090|gb|ACN88274.1| NADH dehydrogenase subunit 7 [Medicago sativa subsp. falcata]
gi|225353092|gb|ACN88275.1| NADH dehydrogenase subunit 7 [Medicago sativa subsp. falcata]
gi|225353094|gb|ACN88276.1| NADH dehydrogenase subunit 7 [Medicago sativa subsp. falcata]
gi|225353096|gb|ACN88277.1| NADH dehydrogenase subunit 7 [Medicago sativa subsp. falcata]
gi|225353098|gb|ACN88278.1| NADH dehydrogenase subunit 7 [Medicago sativa subsp. falcata]
gi|225353100|gb|ACN88279.1| NADH dehydrogenase subunit 7 [Medicago sativa subsp. falcata]
gi|225353102|gb|ACN88280.1| NADH dehydrogenase subunit 7 [Medicago sativa subsp. falcata]
gi|225353104|gb|ACN88281.1| NADH dehydrogenase subunit 7 [Medicago sativa subsp. glomerata]
gi|225353106|gb|ACN88282.1| NADH dehydrogenase subunit 7 [Medicago sativa subsp. x hemicycla]
gi|225353108|gb|ACN88283.1| NADH dehydrogenase subunit 7 [Medicago sativa subsp. x hemicycla]
gi|225353110|gb|ACN88284.1| NADH dehydrogenase subunit 7 [Medicago sativa subsp. x hemicycla]
gi|225353112|gb|ACN88285.1| NADH dehydrogenase subunit 7 [Medicago sativa]
gi|225353114|gb|ACN88286.1| NADH dehydrogenase subunit 7 [Medicago truncatula]
Length = 60
Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/64 (51%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Query: 272 IIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYA 331
II QC N++ G + A D K+ PP R MK SMES IHHF+LYTEG+ VP Y
Sbjct: 1 IILQCPNKM----PSGMIKADDRKLCPPSRCRMKLSMESSIHHFELYTEGFSVPAPSTYT 56
Query: 332 AVEA 335
+VEA
Sbjct: 57 SVEA 60
>gi|89093083|ref|ZP_01166034.1| putative hydrogenase expression/formation protein hupK
[Oceanospirillum sp. MED92]
gi|89082733|gb|EAR61954.1| putative hydrogenase expression/formation protein hupK
[Oceanospirillum sp. MED92]
Length = 380
Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 46/388 (11%), Positives = 107/388 (27%), Gaps = 50/388 (12%)
Query: 26 LILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVE 85
+ L D E++ + +G +L + AV + + + Q A A+E
Sbjct: 13 ISLSYDSEMITDLTIES-SRPKGIAQLFVGQKPQDAVDRIPLIYSLCSVAQTIAGLSAIE 71
Query: 86 KLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYER 145
LG + + R + T + +
Sbjct: 72 SELGCKASEEAIIARKVLLLAE-------------------TGRELAIRVQRDWLKGSGG 112
Query: 146 ASGSRMHAAYFRP---GGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNV 202
+++ + I P+ ++ L N + + +
Sbjct: 113 VELAQLMHWFAELKTELQWALVIAPDGQARSIDLQHVAQRLETILAPLFPENEMRFKEAL 172
Query: 203 NIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVR 262
G A + +G ++ Y D GDC+ V
Sbjct: 173 FSGCTTSPLARVVVSLNELFKGIKLGNFEANTEVTSQYLLHKLD----SEGDCFCAQPVS 228
Query: 263 MMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGY 322
ES R +++ + ++ + + + + + I F G
Sbjct: 229 ENGCLESSVWTRNRSRQVIQEAELLAMHPVAQRFLALVLE--LQEIPQRIARFGKEQLGK 286
Query: 323 H------VPVGEVYAAVEAPKGEFGVYLIS---DGGNKPYRCKIRAPGYAHL---QAMEF 370
+P + V+A +G + G + ++ AP + A++
Sbjct: 287 EALVFSDLP---GMSHVDAARGRLTHRVKITEQHGEARISEYQVIAPTEWNFHPEGALKQ 343
Query: 371 LCKGHQLADV------SAILGSLDIVFG 392
+ KG +++ V ++ ++D
Sbjct: 344 MLKGVKVSLVQARELTERLVLAIDPCVA 371
>gi|301064483|ref|ZP_07204892.1| conserved hypothetical protein [delta proteobacterium NaphS2]
gi|300441413|gb|EFK05769.1| conserved hypothetical protein [delta proteobacterium NaphS2]
Length = 42
Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 29/42 (69%)
Query: 355 CKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
K+R+PG+++L L KGH L D +ILGSLD+V E+DR
Sbjct: 1 MKLRSPGFSNLGLFGGLAKGHLLQDAVSILGSLDLVIPEIDR 42
>gi|296034333|gb|ADG85038.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 464
Score = 58.0 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 10/78 (12%), Positives = 22/78 (28%), Gaps = 2/78 (2%)
Query: 291 ASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP-VGEVYAAVEAPKGEFGVYLISDGG 349
+++++E + E + VP G EA +G +++
Sbjct: 371 YFQAYSAACALHFVEKALEEIRAGRTKTWEKFTVPDEGIGVGFTEAVRGVLSHHMVIR-D 429
Query: 350 NKPYRCKIRAPGYAHLQA 367
K P +
Sbjct: 430 GKIANYHPYPPTPWNASP 447
Score = 43.0 bits (100), Expect = 0.086, Method: Composition-based stats.
Identities = 24/222 (10%), Positives = 47/222 (21%), Gaps = 42/222 (18%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNV------------- 116
+ N G++ P G+ I L + H +
Sbjct: 1 GICGDNHATCSCYCQNMAYGVKPPHLGEWIANLGEAAEYMFDHNIFQENLVGVDYCEKMV 60
Query: 117 ---------------TTQAMDVGALTP--------------PLWGFEEREKLMVFYERAS 147
A D G T + +
Sbjct: 61 SETNPGVPERANNTEAPHAADHGYRTIGDIMRSLNPFTGEFYREALQVSRMTREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTV 207
G +H + PGGV +L+ D + + + + G F +
Sbjct: 121 GRHVHPSTLYPGGVGTVATIQLMTDYLTRLMRYVEFMKKVVPMHDGLFDFFYEALPGYEE 180
Query: 208 KLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
G G +D + + + + +
Sbjct: 181 VGNRRILLGCWGSFQDPEYCNFDYKDMTEWGRKMYVTPGVVV 222
>gi|296034359|gb|ADG85051.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 462
Score = 58.0 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 10/78 (12%), Positives = 22/78 (28%), Gaps = 2/78 (2%)
Query: 291 ASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP-VGEVYAAVEAPKGEFGVYLISDGG 349
+++++E + E + VP G EA +G +++
Sbjct: 371 YFQAYSAACALHFVEKALEEIRAGRTKTWEKFTVPDEGIGVGFTEAVRGVLSHHMVIR-D 429
Query: 350 NKPYRCKIRAPGYAHLQA 367
K P +
Sbjct: 430 GKIANYHPYPPTPWNASP 447
Score = 43.8 bits (102), Expect = 0.053, Method: Composition-based stats.
Identities = 28/287 (9%), Positives = 58/287 (20%), Gaps = 57/287 (19%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNV------------- 116
+ N G++ P G+ I L + H +
Sbjct: 1 GICGDNHATCSCYCQNMAYGVKPPHLGEWIVNLGEAAEYMFDHNIFQENLVGVDYCEKMV 60
Query: 117 ---------------TTQAMDVGALTP--------------PLWGFEEREKLMVFYERAS 147
A D G T + +
Sbjct: 61 GETNPGVLERANNTEAPHAADHGYRTIGDIMRSLNPFTGEFYREALQVSRMTREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIP----PELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVN 203
G +H + PGGV + + + + + + DL
Sbjct: 121 GRHVHPSTLYPGGVGTVATIQLMTDYLTRLMRYVEFMKKVVPMHDDLFDFFYEALPGYEE 180
Query: 204 IGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRM 263
+G ++ F +D + + + + + D + +
Sbjct: 181 VGNRRILLGCWGSFQDP----EYCNFDYKDMTEWGRKMYVTPGVVVDGRLVTTDLVEINL 236
Query: 264 ME-------MRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
E + V N V + P +
Sbjct: 237 GIRILLGTSYYEDWESQEMFVRNDPLGNPVDRRHPWNQHTNPKPQKR 283
>gi|213581880|ref|ZP_03363706.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
Length = 79
Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 10/60 (16%), Positives = 16/60 (26%), Gaps = 15/60 (25%)
Query: 349 GNKPYRCKIRAPGYAH---------LQAMEFLCKGHQLA------DVSAILGSLDIVFGE 393
K + P + + A E G Q+A ++ L S D
Sbjct: 2 DQKIELYQCVVPTTWNASPRDPKKQIGAYEAALMGTQMAIPDQPLEILRTLHSFDPCLAC 61
>gi|296034281|gb|ADG85012.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 464
Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 9/75 (12%), Positives = 21/75 (28%), Gaps = 2/75 (2%)
Query: 291 ASDPKIVPPKRADMKRSMESLIH-HFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGG 349
++++E + H K + + G EA +G +++
Sbjct: 371 YFQAYAAACALHFAEKALEEIRAGHTKTWEKFTVPEEGIGVGFTEAVRGVLSHHMVIR-D 429
Query: 350 NKPYRCKIRAPGYAH 364
K P +
Sbjct: 430 GKIANYHPYPPTPWN 444
Score = 41.1 bits (95), Expect = 0.33, Method: Composition-based stats.
Identities = 21/197 (10%), Positives = 40/197 (20%), Gaps = 46/197 (23%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSH------LLNVTTQAMDV 123
+ N G+ P G+ I L + H L+ V V
Sbjct: 1 GICGDNHATCSVYTQNMAYGVRPPHLGEWIINLGESAEYMFDHNIFQENLVGVDYCEKMV 60
Query: 124 GALTP------------------------------------PLWGFEEREKLMVFYERAS 147
G P + +
Sbjct: 61 GETNPGVLDQANATEAPHAAQHGYKTIGDIMRSLNPLEGEFYREALQVSRMTREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIP----PELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVN 203
G +H + PGGV + + + + + + DL
Sbjct: 121 GRHVHPSTLYPGGVGTVATVQLFTDYLTRLMRYVEFMKRVVPMHDDLFDFFYEAMPGYEE 180
Query: 204 IGTVKLEDAWGWGFSGV 220
+G ++ +
Sbjct: 181 VGRRRVLLGCWGSLNDP 197
>gi|261402746|ref|YP_003246970.1| coenzyme F420-reducing hydrogenase, alpha subunit
[Methanocaldococcus vulcanius M7]
gi|261369739|gb|ACX72488.1| coenzyme F420-reducing hydrogenase, alpha subunit
[Methanocaldococcus vulcanius M7]
Length = 298
Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 26/63 (41%)
Query: 47 RGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEI 106
RG E + + P RL + ++ A +AVEK I +P GQ +R +
Sbjct: 4 RGFETSMMGRDIDFIPPAMSRLCCLNEISHALAGVMAVEKAHNITVPNEGQYLREIARLG 63
Query: 107 GRI 109
+
Sbjct: 64 EIV 66
>gi|296034299|gb|ADG85021.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 467
Score = 57.6 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 2/65 (3%)
Query: 304 MKRSMESLIHHFKLYTEGYHVPV-GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
++++M+ + H E + VP EA +G +L+ K P
Sbjct: 387 VEKAMDRVAHGDLKTFEPFKVPDDAIGCGFHEAVRGVLSHHLVIR-DGKIANYHPYPPTP 445
Query: 363 AHLQA 367
+
Sbjct: 446 WNASP 450
Score = 48.0 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 13/120 (10%), Positives = 24/120 (20%), Gaps = 4/120 (3%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ N A G++ P + I L + H +
Sbjct: 1 GICGDNHATCSVYAQNMAYGVKTPPLAEWIYNLGEAAEFMFDHSIFQDNLVFVDFCEQMV 60
Query: 130 LW----GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
E E+ + G R A R + + +
Sbjct: 61 KETNPSVLERAERTPAPHAAIHGYRTIADIMRSFNPFTGETYKEALVMSRLTREMFCLME 120
>gi|124268002|ref|YP_001022006.1| HupK protein [Methylibium petroleiphilum PM1]
gi|124260777|gb|ABM95771.1| HupK protein [Methylibium petroleiphilum PM1]
Length = 388
Score = 57.3 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 42/335 (12%), Positives = 89/335 (26%), Gaps = 28/335 (8%)
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
+ AV G L R HL + A++
Sbjct: 55 LCGHAHRLCAQRAVAAARGRGDADERNAAGALQLGSLR--EHLRRLCMDWPRQLAVSSHR 112
Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
+ + + A + + + G P L++ + P++
Sbjct: 113 EALAAQAMSQLQHCPAFVAPLLPSNTTAGEAI----PGLLDWLQHAVLRMPAS-----QW 163
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
L Q + E F G+ +P+ + L
Sbjct: 164 LARWERDPQAWSIEWAGQSEGWLAELFRGMPAVADRVL-PAADLEPHAGAASLRELADAL 222
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
+ + R + E+ R +NR G P ++ R +
Sbjct: 223 QESPAFVRQPLWRGACAETGPWNR--LNRPAGPRLDSPRLRLGARLAEAVRLALPDGARR 280
Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGN---KPYRCKIRAPGYAHL-- 365
+ L + + GE A E +G ++ D + C++ AP +
Sbjct: 281 SGAQW-LASGSLALGPGEALAWAEMARGLLVHHVRLDNQGDAARVDSCRVLAPTEWNFHP 339
Query: 366 -QAMEFLCKG--HQLA-----DVSAILGSLDIVFG 392
A+ + ++A +V+ ++ + D
Sbjct: 340 AGALAAALERLSAEVAPTRQREVALLMAAYDPCVP 374
>gi|192289574|ref|YP_001990179.1| hydrogenase expression/formation [Rhodopseudomonas palustris TIE-1]
gi|192283323|gb|ACE99703.1| hydrogenase expression/formation [Rhodopseudomonas palustris TIE-1]
Length = 369
Score = 57.3 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 56/390 (14%), Positives = 107/390 (27%), Gaps = 50/390 (12%)
Query: 19 AAHGVLRLILELD--GEIVERVDPHIGLLHR---GTEKLIETKTFLQAVPYFDRLDYVAP 73
AA G R+ + + G+ V R+D R G +L + K+ V RL +
Sbjct: 3 AAPGEDRIEVGIARRGDRVVRLDITA----RRPIGIGRLAQGKSGEMIVALVPRLFALCA 58
Query: 74 MNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGF 133
Q A A A+ GI + + R++ L G+
Sbjct: 59 SAQGVAAAQALAAARGISLSPVVVAAQASAVLAERMIELLRGTMLLLGGGGSPALTHQL- 117
Query: 134 EEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTG 193
R RP + E + I ++ A +D
Sbjct: 118 ----------------RDLMIAARPSNPAAPLDDEAISHIAQGLEALGLAPGSFADAAA- 160
Query: 194 NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHG 253
+R + ++ E + P + + G
Sbjct: 161 ----CRRWLGSESLLAELHRPLAAEAEFGVAA--------VDPLTAADDAAIGERLTGLG 208
Query: 254 DCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA-DMKRSMESLI 312
+ + E+ R + ++ G +++ ++ R++
Sbjct: 209 PSFAVRPDLAGRVPETGAFARNAHHPVVAAFGPGLGGRLLARLIEIAATPELLRAVRRGN 268
Query: 313 HHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---QAME 369
+ + G AAVE +G + D + +I AP + +
Sbjct: 269 VDTAAVVQSAPLGDGIGLAAVECARGRLYQLIALDAEGAIRQFEILAPTEWNFHPEGPLA 328
Query: 370 FLCKGHQL----AD---VSAILGSLDIVFG 392
G L AD V ++ + D G
Sbjct: 329 RALVGTNLQASEADRRRVERLVAAFDPCVG 358
>gi|213857791|ref|ZP_03384762.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
Length = 51
Score = 56.9 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 11/50 (22%), Positives = 18/50 (36%)
Query: 64 YFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHL 113
R+ V + A E L I++P+ Q IR + H+
Sbjct: 2 IVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHI 51
>gi|296034357|gb|ADG85050.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 456
Score = 56.9 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 9/63 (14%), Positives = 17/63 (26%), Gaps = 1/63 (1%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K +E K + + G EA +G +++ K P +
Sbjct: 380 KALVEIRAGRTKTWEKFTVPQEGIGVGFTEAVRGVLSHHMVIR-DGKIANYHPYPPTPWN 438
Query: 365 LQA 367
Sbjct: 439 ASP 441
>gi|330881291|gb|EGH15440.1| large subunit of hydrogenase 3 [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 81
Score = 56.9 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 30/80 (37%)
Query: 107 GRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIP 166
R+ SHLLN+ G + + F RE M E +G+R GG+ +D+
Sbjct: 2 ERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLL 61
Query: 167 PELVEDIGCWCDSFPSALND 186
+ + + +
Sbjct: 62 KDDMIQTRQLAQQMRREVQE 81
>gi|296034343|gb|ADG85043.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 464
Score = 56.9 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 11/60 (18%), Positives = 17/60 (28%), Gaps = 1/60 (1%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K E H K + G EA +G +++ G K P +
Sbjct: 386 KALAEVRAGHTKTWEPFEVPDEGIGCGFTEAVRGVLSHHMVIKG-GKIANYHPYPPTPWN 444
Score = 41.5 bits (96), Expect = 0.26, Method: Composition-based stats.
Identities = 20/203 (9%), Positives = 40/203 (19%), Gaps = 12/203 (5%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ N A + P G+ I L + H +
Sbjct: 1 GICGDNHATCSCYARNMAYKVRPPHLGEWIVNLGEAAEFMFDHNIFQENLVGVDYCEKMV 60
Query: 130 LW----GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
E+ + + A G R R + +
Sbjct: 61 AETNPGVLEQANRTEAPHADAHGYRTIGDIMRSLNPFSGEFYREALQVSRYTREMFC--- 117
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
L R + G V + + R ++ + +
Sbjct: 118 -----LMEGRHVHPSTLYPGGVGTTATIQLFTDYLTRLMRYVEFMKRVVPMHDDLFDFFY 172
Query: 246 DIPIGKHGDCYDRYLVRMMEMRE 268
+ G R L+ +
Sbjct: 173 EALPGYEEVGRRRTLLGCWGAFQ 195
>gi|2852676|gb|AAC02198.1| periplasmic (NiFe) hydrogenase large subunit [unidentified
eubacterium K6S6]
Length = 128
Score = 56.9 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 8/53 (15%), Positives = 18/53 (33%)
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
V A V+ + + IP +++R L + H+++
Sbjct: 2 CGVCTYVHALASTRCVDNAVKVNIPANARMMRNLVMAAQYLHDHIVHFYHLHA 54
>gi|561866|gb|AAA99491.1| homologous to C-terminus of the HupU protein from Rhodobacter
capsulatus; homologous to HupL proteins [Rhodobacter
sphaeroides]
Length = 64
Score = 56.9 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 13 FGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVA 72
GP + G L + LE+ V + L+RG E+++E + A+ R+ +
Sbjct: 6 VGPFN-RVEGDLEVHLEVAEGAVTAARVNAP-LYRGFERMLEGRDPRDALTITPRICGIC 63
Query: 73 P 73
Sbjct: 64 S 64
>gi|89902876|ref|YP_525347.1| putative hydrogenase expression/formation protein HupK [Rhodoferax
ferrireducens T118]
gi|89347613|gb|ABD71816.1| putative hydrogenase expression/formation protein HupK [Rhodoferax
ferrireducens T118]
Length = 391
Score = 56.9 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 17/146 (11%), Positives = 39/146 (26%), Gaps = 7/146 (4%)
Query: 256 YDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS-MESLIHH 314
+ + + + E+ R + + + + + +SL
Sbjct: 242 FAQQPTWLGQCFENGPWTRLRHRQTQTATPHSAWTRLSTRWLELIEIAAASAPTQSLGRV 301
Query: 315 FKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---QAMEFL 371
L T + G+ A E +G ++ D ++ AP + A+
Sbjct: 302 ALLATGAMKLGPGQALAWCEMARGLLLHWVQLDAQGAVQDYQVVAPTEWNFHPDGALARA 361
Query: 372 CKGHQLAD---VSAILGSLDIVFGEV 394
D S + + D
Sbjct: 362 VAALPAGDTLGASTLAAAFDPCVLCT 387
>gi|12620438|gb|AAG60714.1|AF322012_19 ID39 [Bradyrhizobium japonicum]
Length = 117
Score = 56.9 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 9/82 (10%)
Query: 320 EGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---QAMEFLCKGHQ 376
E Y + G AAVE +G + D + R + AP + + +G
Sbjct: 25 ERYKLGPGRAAAAVECARGRLYHAVELDAHGRISRFEFLAPTEWNFHKRGPLVRNLQGAV 84
Query: 377 LA-----DVS-AILGSLDIVFG 392
L D A++ SLD G
Sbjct: 85 LTAPRRCDAVHAVIASLDPCVG 106
>gi|289192914|ref|YP_003458855.1| nickel-dependent hydrogenase large subunit [Methanocaldococcus sp.
FS406-22]
gi|288939364|gb|ADC70119.1| nickel-dependent hydrogenase large subunit [Methanocaldococcus sp.
FS406-22]
Length = 298
Score = 56.5 bits (135), Expect = 7e-06, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 26/63 (41%)
Query: 47 RGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEI 106
RG E + + P RL + ++ A +AVEK I +P GQ +R +
Sbjct: 4 RGFESSMMGRDIDFIPPAMTRLCCLNEISHALAGVMAVEKAYNITVPNEGQYLREIARLG 63
Query: 107 GRI 109
+
Sbjct: 64 EIV 66
>gi|296034463|gb|ADG85103.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 464
Score = 56.5 bits (135), Expect = 7e-06, Method: Composition-based stats.
Identities = 12/60 (20%), Positives = 18/60 (30%), Gaps = 1/60 (1%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K E H K + E G EA +G +++ G K P +
Sbjct: 386 KALEEIRAGHTKTWQEFTVPDEGIGCGFTEAVRGVLSHHMVIRG-GKIANYHPYPPTPWN 444
>gi|296034339|gb|ADG85041.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 464
Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats.
Identities = 12/60 (20%), Positives = 17/60 (28%), Gaps = 1/60 (1%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K E H K + E EA +G +L+ G K P +
Sbjct: 386 KSLEEIRAGHTKTWAEFKVPDEAIGCGFTEAVRGVLSHHLVIKG-GKIANYHPYPPTPWN 444
Score = 42.2 bits (98), Expect = 0.13, Method: Composition-based stats.
Identities = 22/222 (9%), Positives = 46/222 (20%), Gaps = 42/222 (18%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNV------------- 116
+ N A + G++ P G+ I L + H +
Sbjct: 1 GICGDNHAVCSCYAQQMAYGVQPPNLGEWIVNLGEAAEYMFDHNIFQENLVGVDYCEKMV 60
Query: 117 ---------------TTQAMDVGALTP--------------PLWGFEEREKLMVFYERAS 147
+ G T + +
Sbjct: 61 AETNPGVLEQANRTESPHFEAHGYRTIGDIMRSLNPFSGEFYREALQVSRYTREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTV 207
G +H + PGGV +L D + + + + F +
Sbjct: 121 GRHVHPSTLYPGGVGTTATIQLFTDYITRLMRYVEFMKKVVPMHDDLFDFIYTAMPGYEE 180
Query: 208 KLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
G G ++ R + + + +
Sbjct: 181 NGRRRVLLGCWGAFQDPDVCNFEYRDMAGWGRAMFVTPGVVV 222
>gi|213585321|ref|ZP_03367147.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Typhi str. E98-0664]
Length = 79
Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI- 249
N I K R+ + ++A WG +G +R +G +D+RK +PY Y DF++P+
Sbjct: 1 ALRNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKWRPYSGYENFDFEVPVG 60
Query: 250 GKHGDCYDRYLVRMMEMRE 268
G DCY R ++++ E+R+
Sbjct: 61 GGVSDCYTRVMLKVEELRQ 79
>gi|2852670|gb|AAC02195.1| periplasmic (NiFe) hydrogenase large subunit [unidentified
eubacterium K6S2]
Length = 128
Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats.
Identities = 8/53 (15%), Positives = 18/53 (33%)
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
V A V+ + + IP +++R L + H+++
Sbjct: 2 CGVCTYVHALASTRCVDNAVKVNIPANARMMRNLVMGAQYLHDHIVHFYHLHA 54
>gi|296034465|gb|ADG85104.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 450
Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats.
Identities = 15/121 (12%), Positives = 36/121 (29%), Gaps = 3/121 (2%)
Query: 248 PIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS 307
+ G L R M E +++ + + + + +++R+
Sbjct: 317 YVKATGHSLQMVLPRSPNMPE-MELEWKVPEKSNAIERDRARTYHQAYAALIALHNLERA 375
Query: 308 MESLIHHFKLYTEGYHVPVGEV-YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
M+ + + VP V EA +G +++ K + P +
Sbjct: 376 MKEVQAGRTKSWNKFKVPESAVSCGFHEAARGVLSHHMVIRE-GKIANYQPYPPTPWNAS 434
Query: 367 A 367
Sbjct: 435 P 435
>gi|296034329|gb|ADG85036.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 465
Score = 56.1 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 9/63 (14%), Positives = 17/63 (26%), Gaps = 1/63 (1%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K +E K + + G EA +G +++ K P +
Sbjct: 387 KALIEIRAGRTKTWEKFEVPDEGIGCGFTEAVRGVLSHHMVIR-DGKIANYHPYPPTPWN 445
Query: 365 LQA 367
Sbjct: 446 ASP 448
>gi|296034325|gb|ADG85034.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 463
Score = 56.1 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 9/63 (14%), Positives = 17/63 (26%), Gaps = 1/63 (1%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K +E K + + G EA +G +++ K P +
Sbjct: 387 KALIEIRAGRTKTWEKFEVPDEGIGCGFTEAVRGVLSHHMVIR-DGKIANYHPYPPTPWN 445
Query: 365 LQA 367
Sbjct: 446 ASP 448
>gi|15668908|ref|NP_247712.1| coenzyme F420-reducing hydrogenase subunit alpha
[Methanocaldococcus jannaschii DSM 2661]
gi|2496113|sp|Q58137|Y727_METJA RecName: Full=Uncharacterized protein MJ0727
gi|1591443|gb|AAB98723.1| coenzyme F420-reducing hydrogenase, alpha subunit
[Methanocaldococcus jannaschii DSM 2661]
Length = 298
Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 26/63 (41%)
Query: 47 RGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEI 106
RG E + K P RL + ++ A +AVEK I +P GQ +R +
Sbjct: 4 RGFESSMMGKDIDFIPPAMTRLCCLNEISHALAGVMAVEKAYNITVPNEGQYLREIARLG 63
Query: 107 GRI 109
+
Sbjct: 64 EIV 66
>gi|298351743|sp|P86250|NDUS2_MESAU RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
2, mitochondrial; AltName: Full=Complex I-49kD;
Short=CI-49kD; AltName: Full=NADH-ubiquinone
oxidoreductase 49 kDa subunit
Length = 138
Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/80 (40%), Positives = 36/80 (45%), Gaps = 36/80 (45%)
Query: 317 LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQ 376
LYTEGY VP G Y A+EAPKG H
Sbjct: 95 LYTEGYQVPPGATYTAIEAPKG------------------------------------HM 118
Query: 377 LADVSAILGSLDIVFGEVDR 396
LADV AI+G+ DIVFGE+DR
Sbjct: 119 LADVVAIIGTQDIVFGEIDR 138
Score = 41.9 bits (97), Expect = 0.19, Method: Composition-based stats.
Identities = 39/120 (32%), Positives = 57/120 (47%), Gaps = 42/120 (35%)
Query: 136 REKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNR 195
REK+ FYE RMHAAY RPGGVHQD+P L++DI + +F ++++ ++LT N
Sbjct: 20 REKMFEFYE-----RMHAAYIRPGGVHQDLPLGLMDDIYEFSKNFSLRIDEVEEMLTNN- 73
Query: 196 IFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDC 255
RK+QPY+ Y +++FD+PIG
Sbjct: 74 ------------------------------------RKTQPYDVYDQVEFDVPIGSRLYT 97
>gi|296034377|gb|ADG85060.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 465
Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 15/109 (13%), Positives = 31/109 (28%), Gaps = 7/109 (6%)
Query: 265 EMRESVKIIRQCVN-RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIH-----HFKLY 318
+ S + Q + R+ + + + A+ +E + H K +
Sbjct: 343 HLPRSRALPEQTLEWRIPQWCNAIERNRARAYFIAYAAANAVYFLERGLEEVRQGHTKTF 402
Query: 319 TEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
T G EA +G +L+ K + P +
Sbjct: 403 TNFDVPEEGIGCGFHEAVRGVLSHHLVIR-DQKIANYQPWPPTCWNASP 450
Score = 43.8 bits (102), Expect = 0.047, Method: Composition-based stats.
Identities = 25/221 (11%), Positives = 47/221 (21%), Gaps = 53/221 (23%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA---- 125
+ N A GI++P + I L + H +
Sbjct: 1 GICGDNHTTCSVYAQNMAYGIDMPHVAEWIFNLGEAAEYMFDHTIFQDNLVFVDFCEQIV 60
Query: 126 --------------------------------------LTPPLWGFEEREKLMVFYERAS 147
L E +
Sbjct: 61 KETNPSVLERANQTEAPHADIHGYRTIGDIMRAFNPFTGDMYLAALEVSRTTREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTV 207
G +H + PGG + F ++ + +L + N ++
Sbjct: 121 GRHVHPSTLYPGGTGTMPTSQ----------VFTDYMSRLVKILDFVKRGVPMNDDVFDF 170
Query: 208 KLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
E G+ G + R W + + Y D +
Sbjct: 171 FYEALPGYENVG-LRRTQLGCWGALQHPDHCNYRYQDMNDW 210
>gi|117925786|ref|YP_866403.1| Ni,Fe-hydrogenase I large subunit [Magnetococcus sp. MC-1]
gi|117609542|gb|ABK44997.1| Ni,Fe-hydrogenase I large subunit [Magnetococcus sp. MC-1]
Length = 379
Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/145 (16%), Positives = 40/145 (27%), Gaps = 13/145 (8%)
Query: 260 LVRMMEMRESVKIIRQC---VNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFK 316
ES + R C ++ L + G + + ++ R
Sbjct: 221 PQWQGRCYESSSLTRTCSPLLSALKPLHGNGLLRRTVARLTELCRLFEALRQGDDGALLA 280
Query: 317 LYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---QAMEFLCK 373
G AVEA +G +S G + I AP + +
Sbjct: 281 ALQPFSAAQDGMGVGAVEAARGRLLHR-VSLEGQQISHYAILAPTEWNFHPQGVVAQGLA 339
Query: 374 GHQ------LADVSAILGSLDIVFG 392
G Q L ++ S+D G
Sbjct: 340 GLQGDRQAVLLQAHHVIESIDPCVG 364
>gi|296034275|gb|ADG85009.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 462
Score = 55.3 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 9/78 (11%), Positives = 20/78 (25%), Gaps = 2/78 (2%)
Query: 291 ASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV-GEVYAAVEAPKGEFGVYLISDGG 349
++R+M + E + VP EA +G +++
Sbjct: 371 YFQAYAAACALYFVERAMAEVQAGNVKTWEPFTVPKDAIGCGFTEAVRGALSHHMVIR-D 429
Query: 350 NKPYRCKIRAPGYAHLQA 367
+ P +
Sbjct: 430 GRIANYHPYPPTPWNASP 447
Score = 44.9 bits (105), Expect = 0.023, Method: Composition-based stats.
Identities = 24/197 (12%), Positives = 40/197 (20%), Gaps = 46/197 (23%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQ---------- 119
+ N A G+ P I L + H L
Sbjct: 1 GICGDNHATCSVYAQNMAYGVNPPPISDWILNLGEAAEFMFDHNLFQDNLVGVDFCEQVV 60
Query: 120 ------------------AMDVGALTP--------------PLWGFEEREKLMVFYERAS 147
A G T L + +
Sbjct: 61 KETNPGLWQRAQTTQAAHAAAHGFRTIADIMRSLNPFEGEFYLEALQMSRLAREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIP----PELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVN 203
G +H + +PGGV + + + + + DL
Sbjct: 121 GRHVHPSTVQPGGVGTVPSVQLFSDYLIRLVKYVEFMKRVAPMHDDLFDFFYEALPGYEK 180
Query: 204 IGTVKLEDAWGWGFSGV 220
+G ++ A GF
Sbjct: 181 VGERRVLLACWGGFQDP 197
>gi|121604866|ref|YP_982195.1| hypothetical protein Pnap_1965 [Polaromonas naphthalenivorans CJ2]
gi|120593835|gb|ABM37274.1| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2]
Length = 390
Score = 55.3 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 47/361 (13%), Positives = 89/361 (24%), Gaps = 47/361 (13%)
Query: 52 LIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILS 111
L + K L + +LA++ G + L +E R
Sbjct: 38 LTQGKPASTLPDLLGSLFNLCGQAHRLCASLALQAAGGQTGSLTDTARSTLQTETLR--E 95
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
HL + A TP + + + + P G D P L
Sbjct: 96 HLRRIGLDWPGQLAATP-EACCRAQTLALKALQAC----PLSMAASPAGQTLDFP-GLQA 149
Query: 172 DIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDL 231
+G P+ L ++ G A
Sbjct: 150 WLGQQLLGMPAR-----QWLRQWECNPHDFMSAWCASTPLWLPELLQGCKSVADLAMPGA 204
Query: 232 RKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSA 291
+P+ +L + + R + E+ R +N+ P
Sbjct: 205 PALRPHASRQDLLALAGDLRSTPSFTRQPLWRGHCAETGPWTR--LNQHAPARFDTPWLR 262
Query: 292 SDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVG-------EVYAAVEAPKGEFGVYL 344
++ R + Y + G E A +E +G +
Sbjct: 263 LGARLAELVRLSL--------PDEARCNGPYWLQAGSVCLGDNEGLAWIEMARGLLVHSV 314
Query: 345 ISDGGN---KPYRCKIRAPGYAHL---QAMEFLCKGHQLA---------DVSAILGSLDI 389
DG + C++ AP + A+ + L + A++ + D
Sbjct: 315 QLDGPGLGARVLACRVVAPTEWNFHPQGAVAQVL--ATLPTGFTPEIEQRILALMAAFDP 372
Query: 390 V 390
Sbjct: 373 C 373
>gi|296034449|gb|ADG85096.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 464
Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Query: 304 MKRSMESLIH-HFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
M++++ L H K +TE EA +G +++ K P
Sbjct: 386 MEKALAELHAGHTKTWTEFKVPEEAIGCGFHEAVRGVLSHHVVIKE-GKIANYHPYPPTP 444
Query: 363 AH 364
+
Sbjct: 445 WN 446
Score = 44.9 bits (105), Expect = 0.023, Method: Composition-based stats.
Identities = 18/197 (9%), Positives = 37/197 (18%), Gaps = 46/197 (23%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP- 128
+ N A G++ P + I L + H +
Sbjct: 1 GICGDNHATCATYAQNMAFGVKPPPIAEWIVNLGEAAEYMFDHNIFQDNLVGVDFCEQMV 60
Query: 129 -----------------------------------------PLWGFEEREKLMVFYERAS 147
+
Sbjct: 61 KETNPKVWAKAQSTAAPHASAHGYRTIADIMTALNPFTRAFYREALVMSRMTREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIP----PELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVN 203
G +H + PGGV + + + + + + DL
Sbjct: 121 GRHVHPSTLYPGGVGTVPTVQLFTDYLVRLMKYVEFMKKVVPLHDDLFDFFYDALPGYEE 180
Query: 204 IGTVKLEDAWGWGFSGV 220
+G ++ A F+
Sbjct: 181 VGRRRVLLACWGSFNDP 197
>gi|296034479|gb|ADG85111.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 464
Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Query: 304 MKRSMESLIH-HFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
M++++ L H K +TE EA +G +++ K P
Sbjct: 386 MEKALAELHAGHTKTWTEFKVPEEAIGCGFHEAVRGVLSHHVVIKE-GKIANYHPYPPTP 444
Query: 363 AH 364
+
Sbjct: 445 WN 446
Score = 44.6 bits (104), Expect = 0.028, Method: Composition-based stats.
Identities = 18/197 (9%), Positives = 37/197 (18%), Gaps = 46/197 (23%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP- 128
+ N A G++ P + I L + H +
Sbjct: 1 GICGDNHATCATYAQSMAFGVKPPPIAEWIVNLGEAAEYMFDHNIFQDNLVGVDFCEQMV 60
Query: 129 -----------------------------------------PLWGFEEREKLMVFYERAS 147
+
Sbjct: 61 KETNPKVWAKAQSTAAPHASAHGYRTIADIMTALNPFTGAFYREALVMSRMTREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIP----PELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVN 203
G +H + PGGV + + + + + + DL
Sbjct: 121 GRHVHPSTLYPGGVGTVPTVQLFTDYLVRLMKYVEFMKKVVPLHDDLFDFFYDALPGYEE 180
Query: 204 IGTVKLEDAWGWGFSGV 220
+G ++ A F+
Sbjct: 181 VGRRRVLLACWGSFNDP 197
>gi|296034401|gb|ADG85072.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 465
Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 36/130 (27%), Gaps = 27/130 (20%)
Query: 238 ECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIV 297
+ E+ F+ + + + +R R+ + S + +++ L + G V
Sbjct: 348 HAFPEMQFEWNVPQWSNTIERNRARIYFVAYSAAMAFYFLDKALELVRAGEV-------- 399
Query: 298 PPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKI 357
K + E G EA +G +L+ K
Sbjct: 400 ------------------KTFQEFEVPDEGIGCGFHEAVRGVLSHHLVIR-DGKIANYHP 440
Query: 358 RAPGYAHLQA 367
P +
Sbjct: 441 YPPTPWNGSP 450
Score = 45.7 bits (107), Expect = 0.013, Method: Composition-based stats.
Identities = 16/96 (16%), Positives = 21/96 (21%), Gaps = 4/96 (4%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ N A GIE+P I L + H +
Sbjct: 1 GICGDNHAVCSVYAQNMAYGIEMPPLADWIFNLGEAAEFMFDHTIFQDNLVFVDYCEQMV 60
Query: 130 LW---GFEER-EKLMVFYERASGSRMHAAYFRPGGV 161
ER E+ G R A R
Sbjct: 61 RETNPSLLERAEQTPAPNANIHGYRTIADIMRAFNP 96
>gi|296034457|gb|ADG85100.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 466
Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 2/65 (3%)
Query: 304 MKRSMESLIHHFKLYTEGYHVP-VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
++++E + E + VP G EA +G +++ K P
Sbjct: 386 AEKALEEIRAGRTKTWEKFEVPDEGIGCGFTEAVRGVLSHHMVIR-DGKIANYHPYPPTP 444
Query: 363 AHLQA 367
+
Sbjct: 445 WNASP 449
Score = 44.6 bits (104), Expect = 0.031, Method: Composition-based stats.
Identities = 21/197 (10%), Positives = 38/197 (19%), Gaps = 46/197 (23%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNV------------- 116
+ N G++ P G+ I L + H +
Sbjct: 1 GICGDNHATCSCYCQNMAYGVKPPHIGEWIVNLGEAAEYMFDHNIFQENLVGVDYCEKMV 60
Query: 117 ---------------TTQAMDVGALTP--------------PLWGFEEREKLMVFYERAS 147
A D G T +
Sbjct: 61 SETNPAVLEKANNTEAPHAGDHGYRTVGDIMRALNPFTGDFYREALHVSRYTREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIP----PELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVN 203
G +H + PGGV + + + + + + DL
Sbjct: 121 GRHVHPSTLYPGGVGTVATIQLMTDYLTRLMRYVEFMKKVVPMHDDLFDFFYEALPGYEQ 180
Query: 204 IGTVKLEDAWGWGFSGV 220
+G + F
Sbjct: 181 VGLRRTLLGCWGSFQDP 197
>gi|149587332|ref|XP_001519863.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein
2, 49kDa (NADH-coenzyme Q reductase), partial
[Ornithorhynchus anatinus]
Length = 127
Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 27/31 (87%)
Query: 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGE 33
++K + T+NFGPQHPAAHGVLRL++EL GE
Sbjct: 96 ERKVANVTLNFGPQHPAAHGVLRLVMELSGE 126
>gi|296034389|gb|ADG85066.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 462
Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 9/78 (11%), Positives = 20/78 (25%), Gaps = 2/78 (2%)
Query: 291 ASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV-GEVYAAVEAPKGEFGVYLISDGG 349
++R+M + E + VP EA +G +++
Sbjct: 371 YFQAYAAACALYFVERAMAEVQAGNVKTWEPFTVPKDAIGCGFTEAVRGALSHHMVIR-D 429
Query: 350 NKPYRCKIRAPGYAHLQA 367
+ P +
Sbjct: 430 GRIANYHPYPPTPWNASP 447
Score = 43.0 bits (100), Expect = 0.074, Method: Composition-based stats.
Identities = 23/197 (11%), Positives = 40/197 (20%), Gaps = 46/197 (23%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLN-------------- 115
+ N A G+ P I L + H L
Sbjct: 1 GICGDNHATCSVYAQNMAYGVNPPRISDWILNLGEAAEFMFDHNLFQDNLVGVDFCEHVV 60
Query: 116 --------------VTTQAMDVGALTP--------------PLWGFEEREKLMVFYERAS 147
A G T L + +
Sbjct: 61 RETNPGVWERAQTTQAPHAAAHGFGTIADIMRSLNPFEGEFYLEALQMSRLAREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIP----PELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVN 203
G +H + +PGGV + + + + + + DL
Sbjct: 121 GRHVHPSTVQPGGVGTVPSVQLFSDYLIRLIKYVEFMKRVVPMHDDLFDLFYDALPGYEQ 180
Query: 204 IGTVKLEDAWGWGFSGV 220
+G ++ A G
Sbjct: 181 VGERRVLLACWGGVQDP 197
>gi|296034369|gb|ADG85056.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 467
Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 35/130 (26%), Gaps = 27/130 (20%)
Query: 238 ECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIV 297
+ E+ F+ + + + +R R+ + S + +++ L + G V
Sbjct: 348 DALPEMQFEWNVPQWSNTIERNRARIYFVAYSAAMAFYFLDKALELVRQGEVQ------- 400
Query: 298 PPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKI 357
+ E G EA +G +L+ K
Sbjct: 401 -------------------TFQEFEVPDEGIGCGFHEAVRGVLSHHLVIR-DGKIANYHP 440
Query: 358 RAPGYAHLQA 367
P +
Sbjct: 441 YPPTPWNASP 450
Score = 46.5 bits (109), Expect = 0.008, Method: Composition-based stats.
Identities = 22/226 (9%), Positives = 44/226 (19%), Gaps = 50/226 (22%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP- 128
+ N A GIE+P I L + H + +
Sbjct: 1 GICGDNHAVCSVYAQNMAYGIEMPPLADWIFNLGEAAEFMFDHTIFQDNLVFVDYSEQMV 60
Query: 129 -----------------------------------------PLWGFEEREKLMVFYERAS 147
+ +
Sbjct: 61 SQTNPSLLERAEQTPAPNADIHGYSTIADIMRAFNPFTGEVYKEALQVSRVTREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIP----PELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVN 203
G +H + PGG + + + D A+ D+
Sbjct: 121 GRHVHPSTVYPGGTGTMATVQVFTDYLSRLIKCLDFIKKAVGMNDDVFDFFYEALPGYEE 180
Query: 204 IGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+G ++ F + R +E + + I +
Sbjct: 181 VGNRRIMLGCWSAFQNP----DECDYTYRNMAEWERAAYVTPGIVV 222
>gi|254172084|ref|ZP_04878760.1| cytosolic NiFe-hydrogenase, alpha subunit [Thermococcus sp. AM4]
gi|214033980|gb|EEB74806.1| cytosolic NiFe-hydrogenase, alpha subunit [Thermococcus sp. AM4]
Length = 182
Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/131 (17%), Positives = 43/131 (32%), Gaps = 1/131 (0%)
Query: 17 HPA-AHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMN 75
H A G + + + + V+ V +I R E + K +A+ + R+
Sbjct: 12 HIARVEGKGGVEIVIGDDGVKEVKLNIIEGPRFFEAITLGKKLDEALAVYPRICSFCSAA 71
Query: 76 QEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEE 135
+ A EK + E Q +R + I SH L++ + +
Sbjct: 72 HKLTAVEAAEKAVNFEPREEIQALREVLYIGDMIESHALHLYLLVLPDYLGYSGPLHMVD 131
Query: 136 REKLMVFYERA 146
+ K R
Sbjct: 132 KYKGDRHSARP 142
>gi|296034345|gb|ADG85044.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 464
Score = 54.6 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 1/60 (1%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K +E K + + G EA +G +++ K P +
Sbjct: 386 KALVEIRAGRTKTWEKFTVPDEGIGVGFTEAVRGVLSHHMVIR-DGKIANYHPYPPTPWN 444
Score = 43.8 bits (102), Expect = 0.054, Method: Composition-based stats.
Identities = 29/287 (10%), Positives = 59/287 (20%), Gaps = 57/287 (19%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNV------------- 116
+ N G++ P G+ I L + H +
Sbjct: 1 GICGDNHATCSCYCQNMAYGVKPPHLGEWIVNLGEAAEYMFDHNIFQENLVGVDYCEKMV 60
Query: 117 ---------------TTQAMDVGALTP--------------PLWGFEEREKLMVFYERAS 147
+ A D G T + +
Sbjct: 61 SETNPGVLERANNTEASHAADHGYRTIGDILRSLNPFTGEFYREALQVSRMTREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIP----PELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVN 203
G +H + PGGV + + + + + + DL
Sbjct: 121 GRHVHPSTLYPGGVGTVATIQLMTDYLTRLMRYVEFMKKVVPMHDDLFDFFYEALPGYEE 180
Query: 204 IGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRM 263
+G ++ F +D + + + I + D + +
Sbjct: 181 VGNRRILLGCWGSFQDP----EYCNFDYKDMTEWGRKMYVTPGIVVDGKLITTDLVEINL 236
Query: 264 ME-------MRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
E + V N V + P +
Sbjct: 237 GIRILLGSSYYEDWESQEMFVRNDPLGNPVDRRHPWNQHTNPKPQKR 283
>gi|2330645|emb|CAA74900.1| NADH-ubiquinone oxidoreductase [Pseudomonas fluorescens]
Length = 97
Score = 54.6 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 108 RILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP 167
RI SHLL + T DVG P + F +R+K E +G R+H A++R GGV
Sbjct: 12 RITSHLLFLGTYIQDVGH-DPVFFTFTDRQKAYTVIEAITGFRLHPAWYRIGGVCPRPAT 70
Query: 168 ELVEDIGCWCDSFPSALNDISDLLTGN 194
L + + + + P L++ + N
Sbjct: 71 RLEKLVKDFVEWMPKRLDEYTKAALQN 97
>gi|296034271|gb|ADG85007.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 462
Score = 54.6 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 9/78 (11%), Positives = 20/78 (25%), Gaps = 2/78 (2%)
Query: 291 ASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV-GEVYAAVEAPKGEFGVYLISDGG 349
++R+M + E + VP EA +G +++
Sbjct: 371 YFQAYAAACALYFVERAMAEVQAGNVKTWESFTVPKDAIGCGFTEAVRGALSHHMVIR-D 429
Query: 350 NKPYRCKIRAPGYAHLQA 367
+ P +
Sbjct: 430 GRIANYHPYPPTPWNASP 447
Score = 45.3 bits (106), Expect = 0.015, Method: Composition-based stats.
Identities = 21/197 (10%), Positives = 38/197 (19%), Gaps = 46/197 (23%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA---- 125
+ N A G+ P I L + H L
Sbjct: 1 GICGDNHATCSVYAQNMAYGVNPPPISDWILNLGEAAEFMFDHNLFQDNLVGVDFCEQVV 60
Query: 126 --------------------------------------LTPPLWGFEEREKLMVFYERAS 147
L + +
Sbjct: 61 KETNPGVWERAQTTQAPRATAHGFRTIADIMRSLNPFEGEFYLEALQMSRLAREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIP----PELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVN 203
G +H + +PGGV + + + + + + DL
Sbjct: 121 GRHVHPSTVQPGGVGAVPSVQLFSDYLIRLVKYVEFMKRVVPMHDDLFDFFYDALPGYEK 180
Query: 204 IGTVKLEDAWGWGFSGV 220
+G ++ A GF
Sbjct: 181 VGERRVLLACWGGFQDP 197
>gi|296034351|gb|ADG85047.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 464
Score = 54.6 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 1/60 (1%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K +E K + + G EA +G +++ K P +
Sbjct: 386 KALVEIRAGRTKTWEKFTVPDEGIGVGFTEAVRGVLSHHMVIR-DGKIANYHPYPPTPWN 444
Score = 43.8 bits (102), Expect = 0.043, Method: Composition-based stats.
Identities = 20/197 (10%), Positives = 39/197 (19%), Gaps = 46/197 (23%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNV------------- 116
+ N G++ P G+ I L + H +
Sbjct: 1 GICGDNHATCSCYCQNMAYGVKPPHLGEWIVNLGEAAEYMFDHNIFQENLVGVDYCEKMV 60
Query: 117 ---------------TTQAMDVGALTP--------------PLWGFEEREKLMVFYERAS 147
D G T + +
Sbjct: 61 SETNPGVLERANNTEAPHGADHGYRTIGDIMRSLNPFTGEFYREALQVSRMTREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIP----PELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVN 203
G +H + PGGV + + + + + + DL
Sbjct: 121 GRHVHPSTLYPGGVGTVATIQLMTDHLTRLMRYVEFMKKVVPMHDDLFDFFYEALPGYEE 180
Query: 204 IGTVKLEDAWGWGFSGV 220
+G ++ F
Sbjct: 181 VGNRRILLGCWGSFQDP 197
>gi|296034337|gb|ADG85040.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 464
Score = 54.6 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 1/60 (1%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K +E K + + G EA +G +++ K P +
Sbjct: 386 KALVEIRAGRTKTWEKFTVPDEGIGVGFTEAVRGVLSHHMVIR-DGKIANYHPYPPTPWN 444
Score = 42.2 bits (98), Expect = 0.15, Method: Composition-based stats.
Identities = 27/287 (9%), Positives = 58/287 (20%), Gaps = 57/287 (19%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNV------------- 116
+ N G++ P G+ I L + H +
Sbjct: 1 GICGDNHATCSCYCQNMSYGVKPPHLGEWIVNLGEAAEYMFDHNIFQENLVGVDYCEKMV 60
Query: 117 ---------------TTQAMDVGALTP--------------PLWGFEEREKLMVFYERAS 147
A D G T + +
Sbjct: 61 GETNPGVLERANNTEAPHAADHGYRTIGDIMRSLNPFTGEFYREALQVSRMTREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIP----PELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVN 203
G +H + PGGV + + + + + + DL
Sbjct: 121 GRHVHPSTLYPGGVGTVATIQLMTDYLTRLMRYVEFMKKVVPMHDDLFDFFYEALPGYEE 180
Query: 204 IGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRM 263
+G ++ F +D + + + + + D + +
Sbjct: 181 VGNRRILLGCWGSFQDP----EYCNFDYKDMTEWGRKMYVTPGVVVDGKLVTTDLVEINL 236
Query: 264 ME-------MRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
E + V N + + P +
Sbjct: 237 GIRILLGSSYYEDWESQEMFVRNDPLGNPIDRRHPWNQHTNPKPQKR 283
>gi|2852660|gb|AAC02190.1| periplasmic (NiFe) hydrogenase large subunit [Desulfovibrio
sulfodismutans]
Length = 113
Score = 54.6 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 8/52 (15%), Positives = 18/52 (34%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
V A V+ + + IP +++R L + H+++
Sbjct: 1 GVCTYVHALASTRCVDNAVKVNIPANARMMRNLVMAAQYLHDHIVHFYHLHA 52
>gi|296034469|gb|ADG85106.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 463
Score = 54.6 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 1/60 (1%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K +E K + + G EA +G +++ K P +
Sbjct: 387 KALIEIRAGRTKTWEKFTVPDEGIGCGFTEAVRGVLSHHMVIR-DGKIANYHPYPPTPWN 445
Score = 44.9 bits (105), Expect = 0.021, Method: Composition-based stats.
Identities = 27/250 (10%), Positives = 53/250 (21%), Gaps = 15/250 (6%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ N G++ P G+ I L + H +
Sbjct: 1 GICGDNHATCSCYTQNMAYGVQPPHLGEWIVNLGEAAEYMFDHNIFQENLVGVDYCEKMV 60
Query: 130 LW----GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ E A G R A R + W
Sbjct: 61 SETNPSVLAKAENTQAPNAEAHGYRTIADIMRALNPFTGAFYREALQVSRWTREMFC--- 117
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
L R + G V + + ++ + +
Sbjct: 118 -----LMEGRHVHPSTLYPGGVGTTATIQLMTDYMTRLMRYVEFMKAVVPMHDDLFDFFY 172
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQC---VNRLLGKNKVGPVSASDPKIVPPKRA 302
+ G R L+ + ++ + + V P D K+
Sbjct: 173 EALPGYDQVGLRRTLLGCWGSFQDPEVCNFAYKDMEKWGNAMFVTPGVVIDGKLHTHSLV 232
Query: 303 DMKRSMESLI 312
D+ + L+
Sbjct: 233 DINLGIRILL 242
>gi|296034445|gb|ADG85094.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 463
Score = 54.6 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 1/60 (1%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K +E K + + G EA +G +++ K P +
Sbjct: 387 KALIEIRAGRTKTWEKFTVPDEGIGCGFTEAVRGVLSHHMVIR-DGKIANYHPYPPTPWN 445
Score = 44.9 bits (105), Expect = 0.021, Method: Composition-based stats.
Identities = 27/250 (10%), Positives = 53/250 (21%), Gaps = 15/250 (6%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ N G++ P G+ I L + H +
Sbjct: 1 GICGDNHATCSCYTQNMAYGVQPPHLGEWIVNLGEAAEYMFDHNIFQENLVGVDYCEKMV 60
Query: 130 LW----GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ E A G R A R + W
Sbjct: 61 SETNPSVLAKAENTQAPNAEAHGYRTIADIMRALNPFTGAFYREALQVSRWTREMFC--- 117
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
L R + G V + + ++ + +
Sbjct: 118 -----LMEGRHVHPSTLYPGGVGTTATIQLMTDYMTRLMRYVEFMKAVVPMHDDLFDFFY 172
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQC---VNRLLGKNKVGPVSASDPKIVPPKRA 302
+ G R L+ + ++ + + V P D K+
Sbjct: 173 EALPGYDQVGLRRTLLGCWGSFQDPEVCNFAYKDMEKWGNAMFVTPGVVIDGKLHTHSLV 232
Query: 303 DMKRSMESLI 312
D+ + L+
Sbjct: 233 DINLGIRILL 242
>gi|296034425|gb|ADG85084.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 445
Score = 54.6 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 8/49 (16%), Positives = 14/49 (28%), Gaps = 1/49 (2%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K + G EA +G +++ G K P +
Sbjct: 397 KTWEPFEVPDEGIGCGFTEAVRGVLSHHMVIKG-GKIANYHPYPPTPWN 444
Score = 42.2 bits (98), Expect = 0.14, Method: Composition-based stats.
Identities = 30/246 (12%), Positives = 53/246 (21%), Gaps = 7/246 (2%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ N A G+ P G+ I L + H +
Sbjct: 1 GICGDNHATCSCYAQNMAYGVHPPALGEQIVNLGEAAEYMFDHNIFQENLVGVDFCEKMV 60
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
L S Y G + + + P E
Sbjct: 61 AET--NPGVLEQANRTESPHAADHGYKTIGDIMRSLNPFSGEFYREALQVSRYTREMFC- 117
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
L R + G V + + R ++ + +
Sbjct: 118 -LMEGRHVHPSTLYPGGVGTTATIQLFTDYYIRLMRYVEFMKRVVPMHDDLFDFFYQALP 176
Query: 250 GKHGDCYDRYLVRMMEMRE---SVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
G R L+ + + + + V P D K V D+K
Sbjct: 177 GYEEVGRRRILLGCWGAFQDPAVCNFNYKDMTKWGRAMGVTPGVVIDGKFVTNDLVDIKL 236
Query: 307 SMESLI 312
+ L+
Sbjct: 237 GIRILL 242
>gi|296034451|gb|ADG85097.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 463
Score = 54.2 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 1/60 (1%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K +E K + + G EA +G +++ K P +
Sbjct: 387 KALIEIRAGRTKTWEKFTVPDEGIGCGFTEAVRGVLSHHMVIR-DGKIANYHPYPPTPWN 445
Score = 44.9 bits (105), Expect = 0.022, Method: Composition-based stats.
Identities = 27/250 (10%), Positives = 53/250 (21%), Gaps = 15/250 (6%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ N G++ P G+ I L + H +
Sbjct: 1 GICGDNHATCSCYTQNMAYGVQPPHLGEWIVNLGEAAEYMFDHNIFQENLVGVDYCEKMV 60
Query: 130 LW----GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ E A G R A R + W
Sbjct: 61 SETNPSVLAKAENTQAPNAEAHGYRTIADIMRALNPFTGAFYREALQVSRWTREMFC--- 117
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
L R + G V + + ++ + +
Sbjct: 118 -----LMEGRHVHPSTLYPGGVGTTATIQLMTDYMTRLMRYVEFMKAVVPMHDDLFDFFY 172
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQC---VNRLLGKNKVGPVSASDPKIVPPKRA 302
+ G R L+ + ++ + + V P D K+
Sbjct: 173 EALPGYDQVGLRRTLLGCWGSFQDPEVCNFAYKDMEKWGNAMFVTPGVVIDGKLHTHSLV 232
Query: 303 DMKRSMESLI 312
D+ + L+
Sbjct: 233 DINLGIRILL 242
>gi|296034373|gb|ADG85058.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 464
Score = 54.2 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 10/75 (13%), Positives = 21/75 (28%), Gaps = 2/75 (2%)
Query: 291 ASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP-VGEVYAAVEAPKGEFGVYLISDGG 349
++++E + E + VP G EA +G +++
Sbjct: 371 YFQAYAAASALHFAEKALEEIKAGRTKTWETFEVPDEGIGCGFTEAVRGVLSHHMVIR-D 429
Query: 350 NKPYRCKIRAPGYAH 364
K P +
Sbjct: 430 GKIANYHPYPPTPWN 444
Score = 45.7 bits (107), Expect = 0.011, Method: Composition-based stats.
Identities = 20/208 (9%), Positives = 41/208 (19%), Gaps = 12/208 (5%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ N G++ P G+ + L + H +
Sbjct: 1 GICGDNHATCSCYTQNMAYGVKPPALGEWLINLGEAAEYMFDHNIFQENLVGVDYCERMV 60
Query: 130 LW----GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ E E A G R A R + W
Sbjct: 61 KETNPGVLAKAENTRCANEEAHGYRTIADIMRALNPFTGEFYREALQVSRWTREMFC--- 117
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
L R + G + + + ++ + +
Sbjct: 118 -----LMEGRHVHPSTLYPGGIGTVATIQLMTDYQTRLMRYVEFMKKVVPMHDDLFDFFY 172
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKII 273
+ G R L+ + +
Sbjct: 173 EALPGYEQVGLRRTLLGCWGSFQDPEYC 200
>gi|296034427|gb|ADG85085.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 462
Score = 54.2 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 8/49 (16%), Positives = 14/49 (28%), Gaps = 1/49 (2%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K + G EA +G +++ G K P +
Sbjct: 397 KTWEPFEVPDEGIGCGFTEAVRGVLSHHMVIKG-GKIANYHPYPPTPWN 444
Score = 42.2 bits (98), Expect = 0.13, Method: Composition-based stats.
Identities = 30/248 (12%), Positives = 54/248 (21%), Gaps = 7/248 (2%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ N A G+ P G+ I L + H +
Sbjct: 1 GICGDNHATCSCYAQNMAYGVHPPALGEQIVNLGEAAEYMFDHNIFQENLVGVDFCEKMV 60
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
L S Y G + + + P E
Sbjct: 61 AET--NPGVLEQANRTESPHAADHGYKTIGDIMRSLNPFSGEFYREALQVSRYTREMFC- 117
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
L R + G V + + R ++ + +
Sbjct: 118 -LMEGRHVHPSTLYPGGVGTTATIQLFTDYYIRLMRYVEFMKRVVPMHDDLFDFFYQALP 176
Query: 250 GKHGDCYDRYLVRMMEMRE---SVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
G R L+ + + + + V P D K+V D+
Sbjct: 177 GYEEVGRRRILLGCWGAFQDPAVCNFNYKDMTKWGRAMGVTPGVVVDGKLVTDDLVDINL 236
Query: 307 SMESLIHH 314
+ L+ H
Sbjct: 237 GIRILLGH 244
>gi|296034403|gb|ADG85073.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 464
Score = 54.2 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 11/108 (10%), Positives = 27/108 (25%), Gaps = 9/108 (8%)
Query: 267 RESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK------RSMESLIHHFKLYTE 320
S + + + + ++ + R+M+ + E
Sbjct: 344 PRSGALPEMTLEWRP-PQWSNAIERNRARVYFVAYSAAMAIYFLERAMQKIRAGDTKVFE 402
Query: 321 GYHVP-VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
+ VP EA +G +++ K P +
Sbjct: 403 DFEVPDEAIGCGFHEAVRGVLSHHMVIK-DGKIANYHPYPPTPWNGSP 449
Score = 46.5 bits (109), Expect = 0.007, Method: Composition-based stats.
Identities = 22/222 (9%), Positives = 38/222 (17%), Gaps = 42/222 (18%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP- 128
+ N A GI+ P ++I L + H L +
Sbjct: 1 GICGDNHTTCSVYAQNMAYGIQNPPLTEMIVNLGEAAEYLFDHTLFQDNLVFVDFCESMV 60
Query: 129 -----------------------------------------PLWGFEEREKLMVFYERAS 147
+
Sbjct: 61 KDTNPSVLAKAEKTPAPKAGVHGKRTIADIMRAFNPFEGDVYKEALRVSRVTREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTV 207
G +H + PGGV P L D + + F +
Sbjct: 121 GRHVHPSTVYPGGVGTMPEPTLFTDYLTRLLHILDFVKQAVAMNDDIFDFWYEALPGYEE 180
Query: 208 KLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
G G + + + I +
Sbjct: 181 VGRRRVLLGCWGAFQNPDVVDYRYEHMTDWGRAMHVTPGIVV 222
>gi|296034459|gb|ADG85101.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 465
Score = 54.2 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 1/60 (1%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K +E K + + G EA +G +++ K P +
Sbjct: 387 KALIEIRAGRTKTWEKFTVPDEGIGCGFTEAVRGVLSHHMVIR-DGKIANYHPYPPTPWN 445
Score = 44.2 bits (103), Expect = 0.041, Method: Composition-based stats.
Identities = 28/250 (11%), Positives = 53/250 (21%), Gaps = 15/250 (6%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ N G++ P G+ I L + H +
Sbjct: 1 GICGDNHATCSCYTQNMAYGVQPPHLGEWIVNLGEAAEYMFDHNIFQENLVGVDYCEKMV 60
Query: 130 LW----GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ E A G R A R + W
Sbjct: 61 SETNPSVLAKAENTQAPNAEAHGYRTIADIMRALNPFTGAFYREALQVSRWTREMFC--- 117
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
L R + G V + + ++ + +
Sbjct: 118 -----LMEGRHVHPSTLYPGGVGTTATIQLMTDYMTRLMRYVEFMKAVVPMHDDLFDFFY 172
Query: 246 DIPIGKHGDCYDRYLVRMM---EMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+ G R L+ + E + + + V P D K+
Sbjct: 173 EALPGYDQVGLRRTLLGCWGSFQDPEVCNFDYKDMEKWGNAMFVTPGVVIDGKLHTHSLV 232
Query: 303 DMKRSMESLI 312
D+ + L+
Sbjct: 233 DINLGIRILL 242
>gi|296034413|gb|ADG85078.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 462
Score = 54.2 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 8/49 (16%), Positives = 14/49 (28%), Gaps = 1/49 (2%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K + G EA +G +++ G K P +
Sbjct: 397 KTWEPFEVPDEGIGCGFTEAVRGVLSHHMVIKG-GKIANYHPYPPTPWN 444
Score = 42.2 bits (98), Expect = 0.13, Method: Composition-based stats.
Identities = 30/248 (12%), Positives = 54/248 (21%), Gaps = 7/248 (2%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ N A G+ P G+ I L + H +
Sbjct: 1 GICGDNHATCSCYAQNMAYGVHPPALGEQIVNLGEAAEYMFDHNIFQENLVGVDFCEKMV 60
Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
L S Y G + + + P E
Sbjct: 61 AET--NPGVLGQANRTESPHAADHGYKTIGDIMRSLNPFSGEFYREALQVSRYTREMFC- 117
Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
L R + G V + + R ++ + +
Sbjct: 118 -LMEGRHVHPSTLYPGGVGTTATIQLFMDYYIRLMRYVEFMKRVVPMHDDLFDFFYQALP 176
Query: 250 GKHGDCYDRYLVRMMEMRE---SVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
G R L+ + + + + V P D K+V D+
Sbjct: 177 GYEEVGRRRILLGCWGAFQDPAVCNFNYKDMTKWGRAMGVTPGVVVDGKLVTNDLVDINL 236
Query: 307 SMESLIHH 314
+ L+ H
Sbjct: 237 GIRILLGH 244
>gi|296034363|gb|ADG85053.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 464
Score = 54.2 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 11/108 (10%), Positives = 27/108 (25%), Gaps = 9/108 (8%)
Query: 267 RESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMK------RSMESLIHHFKLYTE 320
S + + + + ++ + R+M+ + E
Sbjct: 344 PRSGALPEMTLEWRP-PQWSNAIERNRARVYFVAYSAAMAIYFLERAMQKIRAGDTKVFE 402
Query: 321 GYHVP-VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
+ VP EA +G +++ K P +
Sbjct: 403 DFEVPDEAIGCGFHEAVRGVLSHHMVIK-DGKIANYHPYPPTPWNGSP 449
Score = 48.0 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 22/222 (9%), Positives = 38/222 (17%), Gaps = 42/222 (18%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP- 128
+ N A GI+ P ++I L + H L +
Sbjct: 1 GICGDNHATCSVYAQNMAYGIQNPPLAEMIVNLGEAAEYLFDHTLFQDNLVFVDFCESMV 60
Query: 129 -----------------------------------------PLWGFEEREKLMVFYERAS 147
+
Sbjct: 61 KDTNPSVLAKAEKTPAPKAGVHGKRTIADIMRAFNPFEGDVYKEALRVSRVTREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTV 207
G +H + PGGV P L D + + F +
Sbjct: 121 GRHVHPSTVYPGGVGTMPEPTLFTDYLTRLLHILDFVKQAVAMNDDIFDFWYEALPGYEE 180
Query: 208 KLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
G G + + + I +
Sbjct: 181 VGRRRVLLGCWGAFQNPDVVDYRYEHMTDWGRAMHVTPGIVV 222
>gi|283798985|ref|ZP_06348138.1| hydrogenase-4 component G [Clostridium sp. M62/1]
gi|291073253|gb|EFE10617.1| hydrogenase-4 component G [Clostridium sp. M62/1]
Length = 56
Score = 54.2 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 373 KGHQLADVSAILGSLDIVFGEVDR 396
+G+ ++D I+GSLD + DR
Sbjct: 1 RGNTVSDAPLIIGSLDPCYSCTDR 24
>gi|296034353|gb|ADG85048.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 463
Score = 54.2 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 10/75 (13%), Positives = 21/75 (28%), Gaps = 2/75 (2%)
Query: 291 ASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV-GEVYAAVEAPKGEFGVYLISDGG 349
++++E + E + VP G EA +G +++
Sbjct: 372 YFQAYAAACALHFAEKALEEIRAGRTKTWEKFEVPEEGIGCGFTEAVRGVLSHHMVIRE- 430
Query: 350 NKPYRCKIRAPGYAH 364
K P +
Sbjct: 431 GKIANYHPYPPTPWN 445
Score = 44.2 bits (103), Expect = 0.039, Method: Composition-based stats.
Identities = 18/197 (9%), Positives = 36/197 (18%), Gaps = 46/197 (23%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP- 128
+ N A G++ P G+ I L + H +
Sbjct: 1 GICGDNHATCSCYAQNMAYGVKPPHLGEWIVNLGEAAEYMFDHNIYQENLLAVDYCERMV 60
Query: 129 -----------------------------------------PLWGFEEREKLMVFYERAS 147
+ +
Sbjct: 61 AETNPGVLEQTNRTESPRAGDHGYRTIGDIMRALNPFTGEFYREALQVSRYTREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIP----PELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVN 203
G +H + PGGV + + + + + + DL
Sbjct: 121 GRHVHPSTLYPGGVGTVATIQLMTDYLSRLMRYVEFMKKVVPMHDDLFDFFYAALPGYEQ 180
Query: 204 IGTVKLEDAWGWGFSGV 220
+G + F
Sbjct: 181 VGLRRTLLGCWGSFQDP 197
>gi|296034447|gb|ADG85095.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 463
Score = 54.2 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 1/60 (1%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K +E K + + G EA +G +++ K P +
Sbjct: 387 KALVEIRAGRTKTWEKFEVPDEGIGCGFTEAVRGVLSHHMVIR-DGKIANYHPHPPTPWN 445
Score = 46.1 bits (108), Expect = 0.010, Method: Composition-based stats.
Identities = 26/252 (10%), Positives = 54/252 (21%), Gaps = 15/252 (5%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ N G++ P G+ + L + H +
Sbjct: 1 GICGDNHCTCSVYCQNMAYGVKPPHLGEWLINLGEAAEYMFDHNIFQENLVGVDYCEKMV 60
Query: 130 LW----GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ E + G R A R + W
Sbjct: 61 SETNPSVLAKAENTQSPHADMHGYRTIADIMRALNPFTGEFYREALQVSRWTREMFC--- 117
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
L R + G + + + ++ + +
Sbjct: 118 -----LMEGRHVHPSTLYPGGIGTTATIQLMTDYMTRLMRYVEFMKSVVPMHDDLFDFFY 172
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQC---VNRLLGKNKVGPVSASDPKIVPPKRA 302
+ G R L+ + ++ + R V P D K+
Sbjct: 173 EALPGYDQVGLRRTLLGCWGSFQDPEVCNFAYKDMERWGDAMFVTPGVVIDGKLHTHSLV 232
Query: 303 DMKRSMESLIHH 314
D+ + L+ H
Sbjct: 233 DINLGIRILLGH 244
>gi|296034321|gb|ADG85032.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 453
Score = 53.8 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 10/75 (13%), Positives = 21/75 (28%), Gaps = 2/75 (2%)
Query: 291 ASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV-GEVYAAVEAPKGEFGVYLISDGG 349
++++E + E + VP G EA +G +++
Sbjct: 372 YFQAYAAACALHFAEKALEEIRAGRTKTWEKFEVPEEGIGCGFTEAVRGVLSHHMVIRE- 430
Query: 350 NKPYRCKIRAPGYAH 364
K P +
Sbjct: 431 GKIANYHPYPPTPWN 445
Score = 43.8 bits (102), Expect = 0.044, Method: Composition-based stats.
Identities = 18/197 (9%), Positives = 36/197 (18%), Gaps = 46/197 (23%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP- 128
+ N A G++ P G+ I L + H +
Sbjct: 1 GICGDNHATCSCYAQNMAYGVKPPHLGEWIVNLGEAAEYMFDHNIYQENLLAVDYCERMV 60
Query: 129 -----------------------------------------PLWGFEEREKLMVFYERAS 147
+ +
Sbjct: 61 AETNPGVLEQTNRTESPRAGDHGYRTIGDIMRALNPFTGEFYREALQVSRYTREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIP----PELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVN 203
G +H + PGGV + + + + + + DL
Sbjct: 121 GRHVHPSTLYPGGVGTVATIQLMTDYLSRLMRYVEFMKKVVPMHDDLFDFFYAALPGYEQ 180
Query: 204 IGTVKLEDAWGWGFSGV 220
+G + F
Sbjct: 181 VGLRRTLLGCWGSFQDP 197
>gi|90426034|ref|YP_534404.1| hypothetical protein RPC_4563 [Rhodopseudomonas palustris BisB18]
gi|90108048|gb|ABD90085.1| hypothetical protein RPC_4563 [Rhodopseudomonas palustris BisB18]
Length = 368
Score = 53.8 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 20/151 (13%), Positives = 35/151 (23%), Gaps = 15/151 (9%)
Query: 255 CYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHH 314
+ E+ R + L + + A ++
Sbjct: 196 TFAAAPWLPGRRPETGPAARAALRGLRPASPAERLCARLAEVAEAADLIAGTQ----RAD 251
Query: 315 FKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA---MEFL 371
+ + G + AVE P+G + R I AP + A
Sbjct: 252 GSEWLSTASLGPGVGFCAVETPRGRLHHLVRLAPQGTVQRYLILAPTEWNFAADGPFAAA 311
Query: 372 CKGHQLAD-------VSAILGS-LDIVFGEV 394
+ + A L S D G
Sbjct: 312 LDKFPVGEDGDAAKSAIARLASLYDPCVGCA 342
>gi|2852656|gb|AAC02188.1| periplasmic (NiFe) hydrogenase large subunit [Desulfovibrio
desulfuricans]
Length = 116
Score = 53.8 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 9/52 (17%), Positives = 17/52 (32%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
V A V+ +G+ IP + R L + H+++
Sbjct: 1 GVCTNVHALASVRCVDDAVGVSIPENATIFRNLVLAQQFLHDHIVHFYHLHA 52
>gi|296034347|gb|ADG85045.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 465
Score = 53.8 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 9/63 (14%), Positives = 17/63 (26%), Gaps = 1/63 (1%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K +E K + + G EA +G +++ K P +
Sbjct: 387 KALVEIRAGRTKTWEKFQVPDEGIGCGFTEAVRGVLSHHMVIR-DGKIANYHPYPPTPWN 445
Query: 365 LQA 367
Sbjct: 446 ASP 448
Score = 44.6 bits (104), Expect = 0.025, Method: Composition-based stats.
Identities = 25/250 (10%), Positives = 53/250 (21%), Gaps = 15/250 (6%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ N G++ P G+ + L + H +
Sbjct: 1 GICGDNHCTCSCYTQNMAYGVKPPHLGEWLINLGEAAEYMFDHNIFQENLVGVDFCEKMV 60
Query: 130 LW----GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ E + G R A R + W
Sbjct: 61 SETNPSVLAKAENTQAPHADMHGYRTIADIMRALNPFTGDFYREALQVSRWTREMFC--- 117
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
L R G + + + + ++ + +
Sbjct: 118 -----LMEGRHVHPSTPYPGGIGTTATIQLMTDYMTRLMRYVDFMKKVVPMHDDLFDFFY 172
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQC---VNRLLGKNKVGPVSASDPKIVPPKRA 302
+ G R L+ + ++ + R V P D K+
Sbjct: 173 EALPGYDQVGLRRTLLGCWGSFQDPEVCNFAYKDMERWGDAMFVTPGVVVDGKLHTHSLV 232
Query: 303 DMKRSMESLI 312
D+ + L+
Sbjct: 233 DINLGLRILL 242
>gi|296034273|gb|ADG85008.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 467
Score = 53.8 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 11/63 (17%), Positives = 19/63 (30%), Gaps = 2/63 (3%)
Query: 306 RSMESLIHHFKLYTEGYHVP-VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
R++E L + + VP EA +G +L+ K P +
Sbjct: 389 RALELLRAGEAKVFQEFEVPDEAIGCGFHEAVRGVLSHHLVIR-DGKIANYHPYPPTPWN 447
Query: 365 LQA 367
Sbjct: 448 GSP 450
Score = 50.3 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/200 (11%), Positives = 39/200 (19%), Gaps = 4/200 (2%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ N A GI +P + I L + H L
Sbjct: 1 GICGDNHAVCSVYAQNMAYGIRMPPLAEWIYNLGEAAEYMFDHTLFQDNLVFVDYCEQMV 60
Query: 130 LW----GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
E E+ G R A R + +I +
Sbjct: 61 RDTNPSVLERAEQTEAPNAEIHGYRTIADIMRAFNPFTGELYKEALNISRITREMFCLME 120
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ + + + I+ + A D YE +
Sbjct: 121 GRHVHPSTIYPGGTGTQSTPQLFTDYLSRLMRVIDFIKQAVAMNDDVFDFFYEALPGYEE 180
Query: 246 DIPIGKHGDCYDRYLVRMME 265
C+ +
Sbjct: 181 VGRRRIQLGCWSAFQNPDEC 200
>gi|296034385|gb|ADG85064.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 450
Score = 53.4 bits (127), Expect = 6e-05, Method: Composition-based stats.
Identities = 10/60 (16%), Positives = 16/60 (26%), Gaps = 1/60 (1%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K E H K + G EA +G +++ K P +
Sbjct: 372 KALTEIRAGHTKTWEAFEVPDEGIGCGFTEAVRGVLSHHMVIR-DGKIANYHPYPPTPWN 430
>gi|2852654|gb|AAC02187.1| periplasmic (NiFe) hydrogenase large subunit [Desulfovibrio
desulfuricans]
Length = 124
Score = 53.4 bits (127), Expect = 6e-05, Method: Composition-based stats.
Identities = 10/55 (18%), Positives = 17/55 (30%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
V A A+E + IP IR L + + H+++
Sbjct: 1 GVCTYTHALASTRALEDAINKPIPANATYIRNLVMAMQFMHDHVVHFYHLHALDF 55
>gi|296034443|gb|ADG85093.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 463
Score = 53.4 bits (127), Expect = 6e-05, Method: Composition-based stats.
Identities = 9/63 (14%), Positives = 17/63 (26%), Gaps = 1/63 (1%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K +E K + + G EA +G +++ K P +
Sbjct: 387 KALVEIRAGRTKTWEKFDVPDEGIGCGFTEAVRGVLSHHMVIR-DGKIANYHPYPPTPWN 445
Query: 365 LQA 367
Sbjct: 446 ASP 448
Score = 45.7 bits (107), Expect = 0.012, Method: Composition-based stats.
Identities = 25/252 (9%), Positives = 55/252 (21%), Gaps = 15/252 (5%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ N G++ P G+ + L + H +
Sbjct: 1 GICGDNHATCSCYCQNMAYGVKPPHLGEWLINLGEAAEYMFDHNIFQENLVGVDYCEKMV 60
Query: 130 LW----GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ E + + G + A R + W
Sbjct: 61 SETNPSVLAKAENIQAPHADMHGYKTIADIMRALNPFTGEFYREALQVSRWTREMFC--- 117
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
L R + G + + + ++ + +
Sbjct: 118 -----LMEGRHVHPSTLYPGGIGTTATIQLMTDYMTRLMRYVEFMKSVVPMHDDLFDFFY 172
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQC---VNRLLGKNKVGPVSASDPKIVPPKRA 302
+ G R L+ + ++ + R V P D K+
Sbjct: 173 EALPGYDQVGLRRTLLGCWGSFQDPEVCNFAYKDMERWGDAMFVTPGVVIDGKLHTHSLV 232
Query: 303 DMKRSMESLIHH 314
D+ + L+ H
Sbjct: 233 DINLGIRILLGH 244
>gi|296034269|gb|ADG85006.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 465
Score = 53.4 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 11/63 (17%), Positives = 19/63 (30%), Gaps = 2/63 (3%)
Query: 306 RSMESLIHHFKLYTEGYHVP-VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
R++E L + + VP EA +G +L+ K P +
Sbjct: 389 RALELLRAGETKVFQEFEVPDEAIGCGFHEAVRGVLSHHLVIR-DGKIANYHPYPPTPWN 447
Query: 365 LQA 367
Sbjct: 448 GSP 450
Score = 50.3 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/200 (11%), Positives = 39/200 (19%), Gaps = 4/200 (2%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ N A GI +P + I L + H L
Sbjct: 1 GICGDNHAVCSVYAQNMAYGIRMPPLAEWIYNLGEAAEYMFDHTLFQDNLVFVDYCEQMV 60
Query: 130 LW----GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
E E+ G R A R + +I +
Sbjct: 61 RDTNPSVLERAEQTEAPNAEIHGYRTIADIMRAFNPFTGELYKEALNISRITREMFCLME 120
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ + + + I+ + A D YE +
Sbjct: 121 GRHVHPSTIYPGGTGTQSTPQLFTDYLSRLMRVIDFIKQAVAMNDDVFDFFYEALPGYEE 180
Query: 246 DIPIGKHGDCYDRYLVRMME 265
C+ +
Sbjct: 181 VGRRRIQLGCWSAFQNPDEC 200
>gi|2852678|gb|AAC02199.1| periplasmic (NiFe) hydrogenase large subunit [unidentified
eubacterium K5S18]
Length = 127
Score = 53.4 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 8/52 (15%), Positives = 18/52 (34%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
V A V+ + + IP +++R L + H+++
Sbjct: 2 GVCTYVHALASTRCVDNAVKVNIPANARMMRNLVMAAQYLHDHIVHFYHLHA 53
>gi|296034285|gb|ADG85014.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 467
Score = 53.0 bits (126), Expect = 8e-05, Method: Composition-based stats.
Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 2/63 (3%)
Query: 306 RSMESLIHHFKLYTEGYHVP-VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
R++E L + + VP EA +G +++ K P +
Sbjct: 389 RALELLRAGETKVFQEFEVPDEAIGCGFHEAVRGVLSHHMVIR-DGKIANYHPYPPTPWN 447
Query: 365 LQA 367
Sbjct: 448 GSP 450
Score = 46.5 bits (109), Expect = 0.008, Method: Composition-based stats.
Identities = 23/226 (10%), Positives = 42/226 (18%), Gaps = 50/226 (22%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM-------- 121
+ N A GI +P + I L + H L
Sbjct: 1 GICGDNHAVCTGYAQNMAYGIAMPPLAEWIYNLGEAAEYMFDHTLFQDNLVFVDYCEQMV 60
Query: 122 --------------------DVGALT--------------PPLWGFEEREKLMVFYERAS 147
G T +
Sbjct: 61 RDTNPSLLERAEQTDAPNAEFHGYRTIADIMRAFNPFTGELYKQALNVSRITREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIPP----ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVN 203
G +H + PGG P + + + D + D+
Sbjct: 121 GRHVHPSTIYPGGTGTMATPQVFTDYLSRMMKVVDFVKQGVLMQDDVFDFFYEALPGYEE 180
Query: 204 IGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+G ++ F + R + + I +
Sbjct: 181 VGNRCIQLGCWSAFQDP----DACDYKYRNMADWGREVYVTPGIVV 222
>gi|296034267|gb|ADG85005.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 464
Score = 53.0 bits (126), Expect = 8e-05, Method: Composition-based stats.
Identities = 10/63 (15%), Positives = 18/63 (28%), Gaps = 2/63 (3%)
Query: 306 RSMESLIHHFKLYTEGYHVP-VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
R++E L + VP EA +G +++ K P +
Sbjct: 389 RALELLRAGETKVFQELEVPDEAIGCGFHEAVRGVLSHHVVIR-DGKIANYHPYPPTPWN 447
Query: 365 LQA 367
Sbjct: 448 ASP 450
Score = 50.3 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/262 (11%), Positives = 60/262 (22%), Gaps = 14/262 (5%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ N A GI +P + I L + H L
Sbjct: 1 GICGDNHAVRSVYAQNMAYGIAMPPLAEWIYNLGEAAEYMFDHTLFQDNLVFVDFCEQMV 60
Query: 130 LW----GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
E+ E+ G R A R + ++ +
Sbjct: 61 RETNPGVLEQAEQTDAPNAEIHGYRTIADIMRAFNPFTGKLYKEALNVSRITREMFCLME 120
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
+ + + + I+ S A D YE +
Sbjct: 121 GRHVHPSTIYPGGTGTMATPQIFTDYLSRLMRVIDFIKQSVAMNDDVFDFFYEAMPGYEE 180
Query: 246 DIPIGKHGDCYD----------RYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPK 295
C+ +Y RE+ V+ L + ++
Sbjct: 181 VGRRRTMLGCWSAFQNPDVVDYKYENMADWGREAYVTPGIVVDGELVTTSLVDINLGIRI 240
Query: 296 IVPPKRADMKRSMESLIHHFKL 317
++ + ++ E+ + H L
Sbjct: 241 LLGSSYYEDWQNEETFVTHDPL 262
>gi|296034305|gb|ADG85024.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 465
Score = 53.0 bits (126), Expect = 8e-05, Method: Composition-based stats.
Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 1/60 (1%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K +E K + + G EA +G +++ K P +
Sbjct: 387 KALVEIRAGRTKTWEKFEVPDEGIGCGFTEAVRGVLSHHVVIR-DGKIANYHPYPPTPWN 445
Score = 45.7 bits (107), Expect = 0.011, Method: Composition-based stats.
Identities = 24/252 (9%), Positives = 53/252 (21%), Gaps = 15/252 (5%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ N G++ P + + L + H +
Sbjct: 1 GICGDNHCTCSCYTQNMAYGVQPPHLAEWLVNLGEAAEYMFDHNIFQENLVGVDYCEKMV 60
Query: 130 LW----GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ E + G R A R + W
Sbjct: 61 SETNPGVLAKAENTQAPHADMHGYRTIAHIMRALNPFTGEFYREALQVSRWTREMFC--- 117
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
L R + G + + + ++ + +
Sbjct: 118 -----LMEGRHVHPSTLYPGGIGTTATIQLMTDYMTRLMRYVEFMTSVVPMHDDLFDFFY 172
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQC---VNRLLGKNKVGPVSASDPKIVPPKRA 302
+ G R L+ + ++ + + V P D K+
Sbjct: 173 EALPGYEKVGLRRTLLGCWGSFQDPEVCNFAYKDMEKWGNAMFVTPGVVIDGKLHTHSLV 232
Query: 303 DMKRSMESLIHH 314
D+ + L+ H
Sbjct: 233 DINLGIRILLGH 244
>gi|296034419|gb|ADG85081.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 464
Score = 53.0 bits (126), Expect = 9e-05, Method: Composition-based stats.
Identities = 10/63 (15%), Positives = 17/63 (26%), Gaps = 1/63 (1%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K E + K +TE EA +G +++ K P +
Sbjct: 388 KALAELHAGNTKTWTEFKVPDEAIGCGFHEAVRGVLSHHVVIR-KGKIANYHPYPPTPWN 446
Query: 365 LQA 367
Sbjct: 447 ASP 449
Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 19/222 (8%), Positives = 41/222 (18%), Gaps = 42/222 (18%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP- 128
+ N A G++ P + I L + H +
Sbjct: 1 GICGDNHATCATYAQNMAFGVKPPPLAEWIINLGEAAEYMFDHNIYQDNLVGVDFCEQMV 60
Query: 129 -----------------------------------------PLWGFEEREKLMVFYERAS 147
+
Sbjct: 61 KETNPSVLAKAEQTAAPHADIHKYRTIADIMRALNPFTGEFYREALSMSRLTREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTV 207
G +H + PGGV +L D + + + L F +
Sbjct: 121 GRHVHPSTLYPGGVGTVPTVQLFTDYLVRLMKYVEFMKKVVPLHDDLFDFFYEALPGYEK 180
Query: 208 KLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ G G + ++ + + + +
Sbjct: 181 VGQRRILLGCWGSFNDPDHCDYTYQRMGEWGKKMFVTPGVVV 222
>gi|296034307|gb|ADG85025.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 463
Score = 53.0 bits (126), Expect = 9e-05, Method: Composition-based stats.
Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 1/60 (1%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K +E K + + G EA +G +++ K P +
Sbjct: 387 KALVEIRAGRTKTWEKFEVPDEGIGCGFTEAVRGVLSHHVVIR-DGKIANYHPYPPTPWN 445
Score = 45.7 bits (107), Expect = 0.012, Method: Composition-based stats.
Identities = 24/252 (9%), Positives = 53/252 (21%), Gaps = 15/252 (5%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ N G++ P + + L + H +
Sbjct: 1 GICGDNHCTCSCYTQNMAYGVQPPHLAEWLVNLGEAAEYMFDHNIFQENLVGVDYCEKMV 60
Query: 130 LW----GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ E + G R A R + W
Sbjct: 61 SETNPGVLAKAENTQAPHADMHGYRTIAHIMRALNPFTGEFYREALQVSRWTREMFC--- 117
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
L R + G + + + ++ + +
Sbjct: 118 -----LMEGRHVHPSTLYPGGIGTTATIQLMTDYMTRLMRYVEFMTSVVPMHDDLFDFFY 172
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQC---VNRLLGKNKVGPVSASDPKIVPPKRA 302
+ G R L+ + ++ + + V P D K+
Sbjct: 173 EALPGYEKVGLRRTLLGCWGSFQDPEVCNFAYKDMEKWGNAMFVTPGVVIDGKLHTHSLV 232
Query: 303 DMKRSMESLIHH 314
D+ + L+ H
Sbjct: 233 DINLGIRILLGH 244
>gi|296034319|gb|ADG85031.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 453
Score = 53.0 bits (126), Expect = 9e-05, Method: Composition-based stats.
Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 1/60 (1%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K +E K + + G EA +G +++ K P +
Sbjct: 387 KALVEIRAGRTKTWEKFEVPDEGIGCGFTEAVRGVLSHHVVIR-DGKIANYHPYPPTPWN 445
Score = 45.7 bits (107), Expect = 0.013, Method: Composition-based stats.
Identities = 24/252 (9%), Positives = 53/252 (21%), Gaps = 15/252 (5%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ N G++ P + + L + H +
Sbjct: 1 GICGDNHCTCSCYTQNMAYGVQPPHLAEWLVNLGEAAEYMFDHNIFQENLVGVDYCEKMV 60
Query: 130 LW----GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ E + G R A R + W
Sbjct: 61 SETNPGVLAKAENTQAPHADMHGYRTIAHIMRALNPFTGEFYREALQVSRWTREMFC--- 117
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
L R + G + + + ++ + +
Sbjct: 118 -----LMEGRHVHPSTLYPGGIGTTATIQLMTDYMTRLMRYVEFMTSVVPMHDDLFDFFY 172
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQC---VNRLLGKNKVGPVSASDPKIVPPKRA 302
+ G R L+ + ++ + + V P D K+
Sbjct: 173 EALPGYEKVGLRRTLLGCWGSFQDPEVCNFAYKDMEKWGNAMFVTPGVVIDGKLHTHSLV 232
Query: 303 DMKRSMESLIHH 314
D+ + L+ H
Sbjct: 233 DINLGIRILLGH 244
>gi|296034291|gb|ADG85017.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 465
Score = 53.0 bits (126), Expect = 9e-05, Method: Composition-based stats.
Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Query: 304 MKRSMESLIHHFKLYTEGYHVP-VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
++++E + E + VP G EA +G +++ K P
Sbjct: 385 AEKALEEIRAGRTKTWEKFEVPDEGIGCGFTEAVRGVLSHHMVIR-DGKIANYHPYPPTP 443
Query: 363 AH 364
+
Sbjct: 444 WN 445
Score = 43.8 bits (102), Expect = 0.054, Method: Composition-based stats.
Identities = 29/252 (11%), Positives = 55/252 (21%), Gaps = 15/252 (5%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ N + GI+ P + + L + H +
Sbjct: 1 GICGDNHCTCSCYTQQMAYGIQPPHLAEWLVNLGEAAEYMFDHNIFQENLVGVDYCEKMV 60
Query: 130 LW----GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ E + G R A R + W
Sbjct: 61 AETNPSVLAKAENTQAPHADMHGYRTTADIMRALNPFTGEFYREALQVSRWTREMFC--- 117
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
L R + G V + + + ++ + +
Sbjct: 118 -----LMEGRHVHPSTLYPGGVGVSATVQLMTDYMTRLMRYVEFTKSVVPMHDDLFDFFY 172
Query: 246 DIPIGKHGDCYDRYLVRMM---EMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
G R L+ + E + + K V P D K+V
Sbjct: 173 AALPGYEKVGLRRTLLGCWGSFQDPEHCNFSYKDMENWGRKMFVTPGVVVDGKLVTTSLV 232
Query: 303 DMKRSMESLIHH 314
D+ + L+ H
Sbjct: 233 DINLGIRILLGH 244
>gi|296034287|gb|ADG85015.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 465
Score = 53.0 bits (126), Expect = 9e-05, Method: Composition-based stats.
Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 2/63 (3%)
Query: 306 RSMESLIHHFKLYTEGYHVP-VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
R++E L + + VP EA +G +++ K P +
Sbjct: 389 RALELLRAGETKVFQEFEVPDEAIGCGFHEAVRGVLSHHMVIR-DGKIANYHPYPPTPWN 447
Query: 365 LQA 367
Sbjct: 448 GSP 450
Score = 48.4 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 16/96 (16%), Positives = 21/96 (21%), Gaps = 4/96 (4%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ N A GI +P + I L + H L
Sbjct: 1 GICGDNHAVCSVYAQNMAYGIAMPPLAEWIYNLGEAAEYMFDHTLFQDNLVFVDYCEQMV 60
Query: 130 LW---GFEER-EKLMVFYERASGSRMHAAYFRPGGV 161
ER E+ G R A R
Sbjct: 61 RDTNPSLLERAEQTDAPNAEFHGYRTIADIMRAFNP 96
>gi|296034341|gb|ADG85042.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 466
Score = 52.6 bits (125), Expect = 9e-05, Method: Composition-based stats.
Identities = 16/115 (13%), Positives = 33/115 (28%), Gaps = 3/115 (2%)
Query: 253 GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLI 312
GD L R M E +++ + + S ++++ME +
Sbjct: 336 GDSIQMALPRTASMPE-MELEWKVPQWSNAIERDRARSYHQAYSALVGLYCVQKAMEEVK 394
Query: 313 HHFKLYTEGYHVP-VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
+ VP EA +G +++ K + P +
Sbjct: 395 AGRTKSWNDFKVPDEAVSVGFHEAARGVLSHHMVIRE-GKIANYQPYPPTPWNAS 448
Score = 47.6 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 21/197 (10%), Positives = 34/197 (17%), Gaps = 46/197 (23%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP- 128
+ N L ++ P G L + H + A
Sbjct: 1 GICGDNHCTCSCLNQNMAYNVKPPKLGDYAFNLAESADFMFDHAIFNDCMANVDFCEQMV 60
Query: 129 -----------------------------------------PLWGFEEREKLMVFYERAS 147
L E Y
Sbjct: 61 KETNPEVLAKAEQTSAEHSSIHGYRTIADIMRALNPFTGDFYLETLEVARYTREMYCLFG 120
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS----DLLTGNRIFKQRNVN 203
G H + PGG DI + + + + DL
Sbjct: 121 GRHTHPSTIMPGGCSADITQQTLTEYYIRLMRYFEYCKRTVPMHDDLYDFFYEAMPGYEK 180
Query: 204 IGTVKLEDAWGWGFSGV 220
+G + + F
Sbjct: 181 VGFRETDLVCWGCFDDP 197
>gi|296034315|gb|ADG85029.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 463
Score = 52.6 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 1/60 (1%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K +E K + + G EA +G +++ K P +
Sbjct: 387 KALVEIRAGRTKTWEKFEVPDEGIGCGFTEAVRGVLSHHMVIR-NGKIANYHPYPPTPWN 445
Score = 41.1 bits (95), Expect = 0.29, Method: Composition-based stats.
Identities = 25/252 (9%), Positives = 54/252 (21%), Gaps = 15/252 (5%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ G++ P G+ + L + H +
Sbjct: 1 GICGDTTATCSCYTQNMAYGVKPPHLGEWLISLGEAAEYMFDHNIFQENLVGVDFCERMV 60
Query: 130 LW----GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ E A G R A R + W
Sbjct: 61 SETNPGVLAKAENTQAPNAGAHGYRTIADIMRALNPFTGEFYREALQVSRWTREMFC--- 117
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
L R + G + + + + ++ + +
Sbjct: 118 -----LMEGRHVHPSTLYPGGIGTTATIQLMTDYMSRLMRYVEFMKKVVPMHDDLFDFFY 172
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQC---VNRLLGKNKVGPVSASDPKIVPPKRA 302
+ G R L+ + ++ + + V P D K+
Sbjct: 173 EALPGYEKVGLRRTLLGCWGSFQDPEVCNFAYKDMEKWGNAMFVTPGVVIDGKLHTHSLV 232
Query: 303 DMKRSMESLIHH 314
D+ + L+ H
Sbjct: 233 DINLGIRILLGH 244
>gi|296034323|gb|ADG85033.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 466
Score = 52.6 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 12/107 (11%), Positives = 32/107 (29%), Gaps = 3/107 (2%)
Query: 259 YLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLY 318
L + M E + I + + + + +++ +++ +
Sbjct: 342 TLPKTGFMPE-MDIEWKVPEKSNAIERDRARTYHQAYSALVGLYNLEEALKEVRAGRTRS 400
Query: 319 TEGYHVPVGEV-YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
+ VP V EA +G +++ K + P +
Sbjct: 401 SNPVTVPENAVSVGFHEAARGVLSHHMVIR-DGKVANYQPYPPTPWN 446
Score = 46.1 bits (108), Expect = 0.010, Method: Composition-based stats.
Identities = 20/197 (10%), Positives = 32/197 (16%), Gaps = 46/197 (23%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP- 128
+ N L + P G L + H +
Sbjct: 1 GICGDNHCTTSVLNQNMAYNVFPPKLGNCGYNLAELADYMFDHAIYNDCMCNVDFCEQMV 60
Query: 129 -----------------------------------------PLWGFEEREKLMVFYERAS 147
L + Y
Sbjct: 61 KDTNPSLLAKAEKTASPHGDIHGYKTIADIMRALNPFTGEFYLETLQVARYTREMYCLFG 120
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS----DLLTGNRIFKQRNVN 203
G H + PGGV DI + D + D+
Sbjct: 121 GRHTHPSTIMPGGVSADITHQTCTDYYVRLMRYMDYCKRTVPMHDDIYDFFLQELPGYDM 180
Query: 204 IGTVKLEDAWGWGFSGV 220
+G + + F
Sbjct: 181 VGYRRTDLICWGSFDDP 197
>gi|296034365|gb|ADG85054.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 454
Score = 52.6 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 9/65 (13%), Positives = 22/65 (33%), Gaps = 2/65 (3%)
Query: 304 MKRSMESLIHHFKLYTEGYHVP-VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
++++++ + + + VP G EA +G +L+ K P
Sbjct: 374 VEKALDLVRQGETQTFQNFEVPDEGIGCGFHEAVRGVLSHHLVIR-DGKIANYHPYPPTP 432
Query: 363 AHLQA 367
+
Sbjct: 433 WNASP 437
Score = 38.0 bits (87), Expect = 2.9, Method: Composition-based stats.
Identities = 15/178 (8%), Positives = 36/178 (20%), Gaps = 4/178 (2%)
Query: 83 AVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLW----GFEEREK 138
A GI++P + + L + H + ++ E+
Sbjct: 1 AQNMAYGIKMPPLAEWMYNLGEAAEYLFDHTIFQDNLVGVDFCENMVKETNPSVWQLAER 60
Query: 139 LMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFK 198
G R A R + + +
Sbjct: 61 TDAPNANIHGYRTIADIMRSLNPFSGQTYREALQMSRLTRHMFCPMEGRHVHPSTLYPGG 120
Query: 199 QRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCY 256
+ + + ++ + +D YE + C+
Sbjct: 121 IGMPATPQIFTDYLVRLMQTMDFLKKAVPLYDDLMDFFYEALPGYEEVGNRRVLLGCW 178
>gi|296034289|gb|ADG85016.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 465
Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 11/63 (17%), Positives = 17/63 (26%), Gaps = 1/63 (1%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K E H K +T EA +G +L+ K + P +
Sbjct: 389 KGLEEVRQGHTKTFTNFDVPDEAIGVGFHEAVRGVLSHHLVIRDR-KIANYQPWPPTCWN 447
Query: 365 LQA 367
Sbjct: 448 ASP 450
Score = 49.2 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 22/226 (9%), Positives = 43/226 (19%), Gaps = 50/226 (22%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDV------ 123
+ N A GI++P + I L + H +
Sbjct: 1 GICGDNHTTCSVYAQNMAYGIDMPHVAEWIFNLGEAAEYMFDHTMFQDNMVFVDFCEQIV 60
Query: 124 ------------------------------------GALTPPLWGFEEREKLMVFYERAS 147
L E +
Sbjct: 61 KETNPSVLERANQTEAPRGDLHGYRKIGDIMRAFNPFVGDMYLAALEVSRTTREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIPPELV----EDIGCWCDSFPSALNDISDLLTGNRIFKQRNVN 203
G +H + PGG +++ + D + DL
Sbjct: 121 GRHVHPSTLYPGGTGTMPTTQVLTDYTARLIRILDFVKKGVPMQDDLFDFWYEALPGYEQ 180
Query: 204 IGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+G + E G +D + + + +
Sbjct: 181 VGLRRTELGCW----GAWQHPDYVNYDYGDMNEWGKNMFVTPGVIV 222
>gi|296034283|gb|ADG85013.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 465
Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 2/63 (3%)
Query: 306 RSMESLIHHFKLYTEGYHVP-VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
R++E L + + VP EA +G +++ K P +
Sbjct: 389 RALELLRAGETKVFQEFEVPDEAIGCGFHEAVRGVLSHHMVIR-DGKIVNYHPYPPTPWN 447
Query: 365 LQA 367
Sbjct: 448 GSP 450
Score = 47.6 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 19/197 (9%), Positives = 35/197 (17%), Gaps = 46/197 (23%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP- 128
+ N A GI +P + I L + H L
Sbjct: 1 GICGDNHAVCSVYAQNMAYGIAMPPLAEWIYNLGEAAEYMFDHTLFQDNLVFVDYCEQMV 60
Query: 129 -----------------------------------------PLWGFEEREKLMVFYERAS 147
+
Sbjct: 61 RDTNPSLLEQAEQTDAPNANSHGYRTIADIMRAFNPFTGQLYKEALNVSRITREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIPP----ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVN 203
G +H + PGG P + + + D + D+
Sbjct: 121 GRHVHPSTIYPGGTGTMATPQIFTDYLSRLMKVIDFVKQGVLMQDDVFDFFYEALPGYEE 180
Query: 204 IGTVKLEDAWGWGFSGV 220
+G +++ F
Sbjct: 181 VGNRRIQLGCWSAFQNP 197
>gi|296034441|gb|ADG85092.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 465
Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 1/60 (1%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K +E K + + G EA +G +++ K P +
Sbjct: 387 KALVEIRAGRTKTWEKFEVPDEGIGCGFTEAVRGVLSHHMVIR-DGKIANYHPYPPTPWN 445
Score = 43.8 bits (102), Expect = 0.045, Method: Composition-based stats.
Identities = 25/250 (10%), Positives = 53/250 (21%), Gaps = 15/250 (6%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ N G++ P G+ + L + H +
Sbjct: 1 GICGDNHCTCSVYCQNMAYGVKPPHLGEWLINLGEAAEYMFDHNIFQENLVGVDYCEKMV 60
Query: 130 LW----GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ E + G R A R + W
Sbjct: 61 SETNPSVLAKAENTQSPHADMHGYRTIADIMRALNPFTGEFYREALQVSRWTREMFC--- 117
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
L R + G + + + ++ + +
Sbjct: 118 -----LMEGRHVHPSTLYPGGIGTTATIQLMTDYMTRLMRYVEFMKSVVPMHDDLFDFFY 172
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQC---VNRLLGKNKVGPVSASDPKIVPPKRA 302
+ G R L+ + ++ + R V P D K+
Sbjct: 173 EALPGYDQVGLRRTLLGCWGSFQDPEVCNFAYKDMERWGDAMFVTPGVVIDGKLHTHSLV 232
Query: 303 DMKRSMESLI 312
D+ + L+
Sbjct: 233 DINLGIRILL 242
>gi|296034477|gb|ADG85110.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 463
Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 1/60 (1%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K +E K + + G EA +G +++ K P +
Sbjct: 387 KALVEIRAGRTKTWEKFEVPDEGIGCGFTEAVRGVLSHHMVIR-DGKIANYHPYPPTPWN 445
Score = 46.1 bits (108), Expect = 0.010, Method: Composition-based stats.
Identities = 26/252 (10%), Positives = 54/252 (21%), Gaps = 15/252 (5%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ N G++ P G+ + L + H +
Sbjct: 1 GICGDNHCTCSVYCQNMAYGVKPPHLGEWLINLGEAAEYMFDHNIFQENLVGVDYCEKMV 60
Query: 130 LW----GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ E + G R A R + W
Sbjct: 61 SETNPSVLAKAENTQSPHADMHGYRTIADIMRALNPFTGEFYREALQVSRWTREMFC--- 117
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
L R + G + + + ++ + +
Sbjct: 118 -----LMEGRHVHPSTLYPGGIGTTATIQLMTDYMTRLMRYVEFMKSVVPMHDDLFDFFY 172
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQC---VNRLLGKNKVGPVSASDPKIVPPKRA 302
+ G R L+ + ++ + R V P D K+
Sbjct: 173 EALPGYDQVGLRRTLLGCWGSFQDPEVCNFAYKDMERWGDAMFVTPGVVIDGKLHTHSLV 232
Query: 303 DMKRSMESLIHH 314
D+ + L+ H
Sbjct: 233 DINLGIRILLGH 244
>gi|296034453|gb|ADG85098.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 465
Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 1/60 (1%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K +E K + + G EA +G +++ K P +
Sbjct: 387 KALVEIRAGRTKTWEKFEVPDEGIGCGFTEAVRGVLSHHMVIR-DGKIANYHPYPPTPWN 445
Score = 46.1 bits (108), Expect = 0.010, Method: Composition-based stats.
Identities = 26/252 (10%), Positives = 54/252 (21%), Gaps = 15/252 (5%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ N G++ P G+ + L + H +
Sbjct: 1 GICGDNHCTCSVYCQNMAYGVKPPHLGEWLINLGEAAEYMFDHNIFQENLVGVDYCEKMV 60
Query: 130 LW----GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ E + G R A R + W
Sbjct: 61 SETNPSVLAKAENTQSPHADMHGYRTIADIMRALNPFTGEFYREALQVSRWTREMFC--- 117
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
L R + G + + + ++ + +
Sbjct: 118 -----LMEGRHVHPSTLYPGGIGTTATIQLMTDYMTRLMRYVEFMKSVVPMHDDLFDFFY 172
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQC---VNRLLGKNKVGPVSASDPKIVPPKRA 302
+ G R L+ + ++ + R V P D K+
Sbjct: 173 EALPGYDQVGLRRTLLGCWGSFQDPEVCNFAYKDMERWGDAMFVTPGVVIDGKLHTHSLV 232
Query: 303 DMKRSMESLIHH 314
D+ + L+ H
Sbjct: 233 DINLGIRILLGH 244
>gi|296034277|gb|ADG85010.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 463
Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 1/60 (1%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K +E K + + G EA +G +++ K P +
Sbjct: 387 KALVEIRAGRTKTWEKFEVPDEGIGCGFTEAVRGVLSHHMVIR-DGKIANYHPYPPTPWN 445
Score = 42.6 bits (99), Expect = 0.12, Method: Composition-based stats.
Identities = 20/197 (10%), Positives = 37/197 (18%), Gaps = 46/197 (23%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP- 128
+ N A G++ P G+ I L + H +
Sbjct: 1 GICGDNHATCSCYAQNMAYGVKPPHLGEWIVNLGEAAEYMFDHNIFQENLVGVDYCERMV 60
Query: 129 -----------------------------------------PLWGFEEREKLMVFYERAS 147
+ +
Sbjct: 61 SETNPGVLEKANNTEAPRGGEHGYRTIGDIMRSLNPFTGEFYREALQVGRYTREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS----DLLTGNRIFKQRNVN 203
G +H + PGGV +L+ D + + + DL
Sbjct: 121 GRHVHPSTLYPGGVGTVATIQLMTDYMTRLMRYIEFIKKVVPMHDDLFDFFYEALPGYEQ 180
Query: 204 IGTVKLEDAWGWGFSGV 220
+G + F
Sbjct: 181 VGLRRTLLGCWGSFQDP 197
>gi|296034439|gb|ADG85091.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 463
Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 1/60 (1%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K +E K + + G EA +G +++ K P +
Sbjct: 387 KALVEIRAGRTKTWEKFEVPDEGIGCGFTEAVRGVLSHHMVIR-DGKIANYHPYPPTPWN 445
Score = 43.8 bits (102), Expect = 0.052, Method: Composition-based stats.
Identities = 25/250 (10%), Positives = 53/250 (21%), Gaps = 15/250 (6%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ N G++ P G+ + L + H +
Sbjct: 1 GICGDNHCTCSVYCQNMAYGVKPPHLGEWLINLGEAAEYMFDHNIFQENLVGVDYCEKMV 60
Query: 130 LW----GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ E + G R A R + W
Sbjct: 61 SETNPSVLAKAENTQAPHADMHGYRTIADIMRALNPFTGEFYREALQVSRWTREMFC--- 117
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
L R + G + + + ++ + +
Sbjct: 118 -----LMEGRHVHPSTLYPGGIGTTATIQLMTDYMTRLMRYVEFMKSVVPMHDDLFDFFY 172
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQC---VNRLLGKNKVGPVSASDPKIVPPKRA 302
+ G R L+ + ++ + R V P D K+
Sbjct: 173 EALPGYDQVGLRRTLLGCWGSFQDPEVCNFAYKDMERWGDAMFVTPGVVIDGKLHTHSLV 232
Query: 303 DMKRSMESLI 312
D+ + L+
Sbjct: 233 DINLGIRILL 242
>gi|296034301|gb|ADG85022.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 463
Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 1/60 (1%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K +E K + + G EA +G +++ K P +
Sbjct: 387 KALVEIRAGRTKTWEKFEVPDEGIGCGFTEAVRGVLSHHMVIR-DGKIANYHPYPPTPWN 445
Score = 42.6 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 18/226 (7%), Positives = 45/226 (19%), Gaps = 50/226 (22%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLN-------------- 115
+ N + GI+ P + + L + H +
Sbjct: 1 GICGDNHCTCSCYTQQMAYGIQPPHLAEWLVNLGEAAEYMFDHNIFQENLVGVDYCEKMV 60
Query: 116 --------------VTTQAMDVGALTP--------------PLWGFEEREKLMVFYERAS 147
+ A G T + +
Sbjct: 61 AETNPGVLAKAENTQASHADMHGYRTIADIMRALNPFTGEFYREALQVSRWTREMFCLME 120
Query: 148 GSRMHAAYFRP----GGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVN 203
G +H + P + + + + + + S + DL
Sbjct: 121 GRHVHPSTLYPGGIGTTATIQLMTDYMTRLMRYVEFMKSVVPMHDDLFDFFYEALPGYEK 180
Query: 204 IGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+G + F + R + + + + +
Sbjct: 181 VGLRRTLLGCWGSFQDP----EHCNFSYRDMESWGRKMFVTPGVVV 222
>gi|296034381|gb|ADG85062.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 468
Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/203 (9%), Positives = 42/203 (20%), Gaps = 12/203 (5%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ N A GI++P + I L + H +
Sbjct: 1 GICGDNHAVCSVYAQNMAYGIKMPPLAEWIYNLGEAAEYMFDHTIFQDNLVGVDFCENMV 60
Query: 130 LW----GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+++ E+ G R R + +
Sbjct: 61 KETNPSVWQQAERTDAPNANIHGYRTIGDIMRSLNPFTGDTYKEALKMSRITRHMFC--- 117
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
L R + G ++ + + Y+ + +
Sbjct: 118 -----LMEGRHVHPSTLYPGGTGTMGTSQIFTDYLVRLMEFMDFAKKAVPMYDDLMDFFY 172
Query: 246 DIPIGKHGDCYDRYLVRMMEMRE 268
+ G R L+ +
Sbjct: 173 EALPGYEEVGNRRVLLGCWGSFQ 195
Score = 48.8 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 6/50 (12%), Positives = 12/50 (24%), Gaps = 1/50 (2%)
Query: 318 YTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
+ E EA +G +++ K P +
Sbjct: 403 FQEFEVPDDAIGCGFHEAVRGVLSHHMVIR-DGKIANYHPYPPTPWNASP 451
>gi|296034371|gb|ADG85057.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 466
Score = 51.9 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 10/65 (15%), Positives = 19/65 (29%), Gaps = 2/65 (3%)
Query: 304 MKRSMESLIHHFKLYTEGYHVPV-GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGY 362
++R++ L + VP EA +G +L+ K P
Sbjct: 386 VERALADLHAGRTDTWTPFKVPDDAIGCGFHEAVRGILSHHLVIR-DGKIANYHPYPPTP 444
Query: 363 AHLQA 367
+
Sbjct: 445 WNASP 449
Score = 46.1 bits (108), Expect = 0.009, Method: Composition-based stats.
Identities = 22/197 (11%), Positives = 39/197 (19%), Gaps = 46/197 (23%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNV------------- 116
+ N A GI P + I L + H L
Sbjct: 1 GICGDNHATCAIYAQNMAFGIRPPSMAEWIINLGEAAEYMFDHNLFQDNLVGVDFCEQMV 60
Query: 117 ---------------TTQAMDVGALTP--------------PLWGFEEREKLMVFYERAS 147
A G T + +
Sbjct: 61 KETNPRVLERAEITLAPHAHIHGYRTIADIMRSLNPFVGPFYREALQMSRLSREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIP----PELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVN 203
G +H + PGGV + + + + + + DL +
Sbjct: 121 GRHVHPSTLYPGGVGTVPTVQLFTDYLIRLLKYVEFMKKVVPLHDDLFDFFYMALPGYEQ 180
Query: 204 IGTVKLEDAWGWGFSGV 220
+G ++ F
Sbjct: 181 VGRRRVLLGCWGSFQNP 197
>gi|296034303|gb|ADG85023.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 464
Score = 51.9 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 7/52 (13%), Positives = 14/52 (26%), Gaps = 1/52 (1%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
K ++E EA +G +++ K P +
Sbjct: 399 KTWSESKVPEEAIACGFHEAVRGLLSHHVVIR-QGKIANYHPYPPTCWNASP 449
Score = 43.4 bits (101), Expect = 0.065, Method: Composition-based stats.
Identities = 18/166 (10%), Positives = 28/166 (16%), Gaps = 42/166 (25%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA---- 125
+ N A G+ P I L + H L
Sbjct: 1 GICGDNHATCSVYAQNMAFGVRPPALADWIINLGEAAEYMFDHNLYQDNLVGIDFCEQMV 60
Query: 126 --------------------------------------LTPPLWGFEEREKLMVFYERAS 147
T + +
Sbjct: 61 RETNPTVLARAETTSAPHAAIHGYQTIADIMRTLNPFTGTFYREALQMSRLSREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTG 193
G +H + PGGV +L + + L L
Sbjct: 121 GRHVHPSTLYPGGVGTVPSVQLFTEYQVRLMKYAEFLKRAVPLHDD 166
>gi|296034279|gb|ADG85011.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 466
Score = 51.9 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/203 (9%), Positives = 42/203 (20%), Gaps = 12/203 (5%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ N A GI++P + I L + H +
Sbjct: 1 GICGDNHAVCSVYAQNMAYGIKMPPLAEWIYNLGEAAEYMFDHTIFQDNLVGVDFCENMV 60
Query: 130 LW----GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+++ E+ G R R + +
Sbjct: 61 KETNPSVWQQAERTDAPNANIHGYRTIGDIMRSLNPFTGDTYKEALKMSRITRHMFC--- 117
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
L R + G ++ + + Y+ + +
Sbjct: 118 -----LMEGRHVHPSTLYPGGTGTMGTSQIFTDYLVRLMEFMDFVKKAVPMYDDLMDFFY 172
Query: 246 DIPIGKHGDCYDRYLVRMMEMRE 268
+ G R L+ +
Sbjct: 173 EALPGYEEVGNRRVLLGCWGSFQ 195
Score = 48.8 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 6/50 (12%), Positives = 12/50 (24%), Gaps = 1/50 (2%)
Query: 318 YTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
+ E EA +G +++ K P +
Sbjct: 403 FQEFEVPDDAIGCGFHEAVRGVLSHHMVIR-DGKIANYHPYPPTPWNASP 451
>gi|260505883|gb|ACX42343.1| NiFe-hydrogenase large subunit [Streptomyces sp. HP12]
Length = 430
Score = 51.9 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 10/92 (10%), Positives = 22/92 (23%), Gaps = 2/92 (2%)
Query: 274 RQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP-VGEVYAA 332
Q + + ++ +E + E + VP
Sbjct: 339 WQIPKWSNALERNRARTYFQAYAAAVALHCAEKGLEEVRAGRTQTWEKFEVPDESIGVGF 398
Query: 333 VEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
EA +G +++ K P +
Sbjct: 399 TEAVRGVLSHHMVIR-DGKIANYHPYPPTPWN 429
>gi|296034391|gb|ADG85067.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 462
Score = 51.9 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 4/76 (5%)
Query: 291 ASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVY--AAVEAPKGEFGVYLISDG 348
+++++E L E + VP E EA +G +++ G
Sbjct: 371 YFQAYAAASALHFVEKALEELRAGNTKTWESFKVPK-EAISCGFTEAVRGVLSHHMVIRG 429
Query: 349 GNKPYRCKIRAPGYAH 364
K P +
Sbjct: 430 -GKIANYHPYPPTPWN 444
Score = 41.5 bits (96), Expect = 0.24, Method: Composition-based stats.
Identities = 19/222 (8%), Positives = 44/222 (19%), Gaps = 42/222 (18%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNV------------- 116
+ N G+ P + + L + H +
Sbjct: 1 GICGDNHATCSVYNQNMAYGVRPPHIAEWMINLGEAAEYMFDHNIFQENLVGVDYCEKMI 60
Query: 117 ---------------TTQAMDVGALTP--------------PLWGFEEREKLMVFYERAS 147
+ A D G T + +
Sbjct: 61 AETNPGVLKLANRTESPHAEDHGYKTIGDIMRSLNPLSGEFYREALQVSRYTREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTV 207
G +H + PGG+ +L D + + + + F + +
Sbjct: 121 GRHVHPSTLYPGGIGAVATIQLFMDYLTRLMKYVEFMKRVVPMHDDLFDFMYEALPGYEM 180
Query: 208 KLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
G G + + + + + +
Sbjct: 181 VGYRRTLLGCWGALNDPEHCDFTYENMAAWGRKMFVTPGVVV 222
>gi|2852658|gb|AAC02189.1| periplasmic (NiFe) hydrogenase large subunit [Desulfovibrio longus]
Length = 123
Score = 51.5 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 18/50 (36%)
Query: 72 APMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A V+ +G++IP LIR L + H+++
Sbjct: 1 CTYTHALASTRCVDNAVGVKIPKNATLIRNLVLAAQFMHDHIVHFYHLHA 50
>gi|146303725|ref|YP_001191041.1| Ni Fe-hydrogenase I large subunit-like protein [Metallosphaera
sedula DSM 5348]
gi|145701975|gb|ABP95117.1| Ni Fe-hydrogenase I large subunit-like protein [Metallosphaera
sedula DSM 5348]
Length = 745
Score = 51.5 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 12/70 (17%), Positives = 21/70 (30%), Gaps = 1/70 (1%)
Query: 33 EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEI 92
V G + RG E + K + R + + + +A E G
Sbjct: 40 NRVTDAYAAAG-MFRGFEIFMRNKPGPDVIMLSSRECGICGEHHQFIERIAQEMAQGGNA 98
Query: 93 PIRGQLIRVL 102
P L ++
Sbjct: 99 PPPLGLETII 108
>gi|46201239|ref|ZP_00208025.1| COG0374: Ni,Fe-hydrogenase I large subunit [Magnetospirillum
magnetotacticum MS-1]
Length = 127
Score = 51.5 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 8/74 (10%)
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---QAMEFLCKGHQLADVSA 382
G V+A +G ++ +I AP + + G D+ A
Sbjct: 46 DGTGLGLVDAARGLLAHWVELRE-GVLSGYRILAPTEWNFHPEGPLAQGLLGAWGPDLEA 104
Query: 383 ----ILGSLDIVFG 392
+ SLD
Sbjct: 105 KARLLAASLDPCVP 118
>gi|10179599|gb|AAG13808.1| NADH-ubiquinone oxidoreductase NDUFS2 subunit [Homo sapiens]
Length = 28
Score = 51.5 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/28 (78%), Positives = 27/28 (96%)
Query: 338 GEFGVYLISDGGNKPYRCKIRAPGYAHL 365
GEFGVYL+SDG ++PYRCKI+APG+AHL
Sbjct: 1 GEFGVYLVSDGSSRPYRCKIKAPGFAHL 28
>gi|312113751|ref|YP_004011347.1| Ni,Fe-hydrogenase I large subunit [Rhodomicrobium vannielii ATCC
17100]
gi|311218880|gb|ADP70248.1| Ni,Fe-hydrogenase I large subunit [Rhodomicrobium vannielii ATCC
17100]
Length = 394
Score = 51.5 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 45/323 (13%), Positives = 86/323 (26%), Gaps = 22/323 (6%)
Query: 88 LGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERAS 147
I +P + R + H L + E R + + A
Sbjct: 70 HRIVVPESTRRAREMRVIAESAREHTLRILMDWSQFLYKPGLPPATELRAAMQAERDLAR 129
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIG-- 205
+A R G + +DI A+ + R K +N
Sbjct: 130 HLDEGSAALRFAGTFIYEKDGVEKDIAANEALLECAIFGEPLRIWRARETKADLINWAEQ 189
Query: 206 -TVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMM 264
+ + + + A + + ++ FD D
Sbjct: 190 RHTVAQLLFDQIATDGFLDAGAAPVSPLPAFDRDRLAQRLFDDSQAHFVAAPDWEGAPRE 249
Query: 265 EMRESVKIIRQCVNRLLGKNKVGPVSASDPKI-----VPPKRADMKRSMESLIHHFKLYT 319
+ + + L + G + + VP + D ++++ H
Sbjct: 250 TSPLARSLDHPLIRALETDDGFGLGARLAACLVELASVPRRLRDAAATLDAPNHAAPERD 309
Query: 320 EGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKG-HQLA 378
E G + +EA +G + G K R +I AP + +G ++A
Sbjct: 310 ETA---PGIGLSQIEAARGRLVHAVEMSG-GKVSRYRILAPTEWNFHPEGAAARGLARIA 365
Query: 379 -----DVSAILGSL----DIVFG 392
DV+ I D G
Sbjct: 366 QGDSHDVARIARLFVTAVDPCVG 388
>gi|296034335|gb|ADG85039.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 462
Score = 51.1 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 7/52 (13%), Positives = 14/52 (26%), Gaps = 1/52 (1%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
K + G EA +G +++ +K P +
Sbjct: 397 KTWEPFEVPEEGIGCGFTEAVRGVLSHHMVIR-DHKIANYHPYPPTPWNASP 447
Score = 42.2 bits (98), Expect = 0.12, Method: Composition-based stats.
Identities = 20/222 (9%), Positives = 43/222 (19%), Gaps = 42/222 (18%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNV------------- 116
+ N P + I L + H +
Sbjct: 1 GICGDNHATCSCYTQNMAYQARPPALAEWIINLGEAAEYMFDHNIFQENLVGVDYCEKMV 60
Query: 117 ---------------TTQAMDVGALTP--------------PLWGFEEREKLMVFYERAS 147
A G T + +
Sbjct: 61 RETNPGVWEQAQKAEAPHADAHGYRTIADIMRSLNPFEGEFYREALQMSRLTREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTV 207
G +H + PGGV +L D + + + + F + +
Sbjct: 121 GRHVHPSTLYPGGVGTVPTVQLFTDYMTRLMKYVEFMKRVVPMHDDLFDFFYQALPGYYK 180
Query: 208 KLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+ G G ++ R + + + + +
Sbjct: 181 VGQRRVLLGCWGAFQDPDYCNFEYRDMTDWGRHMFVTPGVVV 222
>gi|296034437|gb|ADG85090.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 464
Score = 51.1 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 7/49 (14%), Positives = 14/49 (28%), Gaps = 1/49 (2%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K ++E EA +G +++ K P +
Sbjct: 399 KTWSEFSVPQEAIGCGFHEAVRGVLSHHVVIR-DGKIANYHPYPPTPWN 446
Score = 43.0 bits (100), Expect = 0.091, Method: Composition-based stats.
Identities = 18/197 (9%), Positives = 37/197 (18%), Gaps = 46/197 (23%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP- 128
+ N A G+ P + I L + H +
Sbjct: 1 GICGDNHATCATYAQNMAFGVRPPAMAEWIVNLGEAAEYMFDHNIFQDNLVGVDFCEQMV 60
Query: 129 -----------------------------------------PLWGFEEREKLMVFYERAS 147
+ +
Sbjct: 61 KETNPGVYAKAEKTAAPGADLHGYRTIADIMKALNPFVGSFYREALQMSRMTREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIP----PELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVN 203
G +H + PGGV + + + + + + DLL
Sbjct: 121 GRHVHPSTLYPGGVGTVPTVQLFTDYLVRLMKYVEFMKKVVPLHDDLLNFFYEALPGYEE 180
Query: 204 IGTVKLEDAWGWGFSGV 220
+G ++ F+
Sbjct: 181 VGRRRVLLGCWGSFNNP 197
>gi|296034417|gb|ADG85080.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 445
Score = 51.1 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 7/49 (14%), Positives = 14/49 (28%), Gaps = 1/49 (2%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K ++E EA +G +++ K P +
Sbjct: 380 KTWSEFSVPQEAIGCGFHEAVRGVLSHHVVIR-DGKIANYHPYPPTPWN 427
>gi|296034433|gb|ADG85088.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 464
Score = 51.1 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 7/49 (14%), Positives = 14/49 (28%), Gaps = 1/49 (2%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K ++E EA +G +++ K P +
Sbjct: 399 KTWSEFSVPQEAIGCGFHEAVRGVLSHHVVIR-DGKIANYHPYPPTPWN 446
Score = 43.8 bits (102), Expect = 0.051, Method: Composition-based stats.
Identities = 20/222 (9%), Positives = 41/222 (18%), Gaps = 42/222 (18%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP- 128
+ N A G+ P + I L + H +
Sbjct: 1 GICGDNHATCATYAQNMAFGVRPPAMAEWIVNLGEAAEYMFDHNIFQDNLVGVDFCEQMV 60
Query: 129 -----------------------------------------PLWGFEEREKLMVFYERAS 147
+ +
Sbjct: 61 KETNPGVYAKAEKTAAPGADLHGYRTIADIMKALNPFVGSFYREALQMSRMTREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTV 207
G +H + PGGV +L D + + + L F +
Sbjct: 121 GRHVHPSTLYPGGVGTVPTVQLFTDYLVRLMKYVEFMKKVVPLHDDLFNFFYEALPGYEE 180
Query: 208 KLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
G G + + +K + + + +
Sbjct: 181 VGRRRVLLGCWGSFNNPAVCDYSYKKMTEWGRAMYVTPGVVV 222
>gi|296034415|gb|ADG85079.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 466
Score = 51.1 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 7/49 (14%), Positives = 14/49 (28%), Gaps = 1/49 (2%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K ++E EA +G +++ K P +
Sbjct: 399 KTWSEFSVPQEAIGCGFHEAVRGVLSHHVVIR-DGKIANYHPYPPTPWN 446
Score = 43.8 bits (102), Expect = 0.051, Method: Composition-based stats.
Identities = 20/222 (9%), Positives = 41/222 (18%), Gaps = 42/222 (18%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP- 128
+ N A G+ P + I L + H +
Sbjct: 1 GICGDNHATCATYAQNMAFGVRPPAMAEWIVNLGEAAEYMFDHNIFQDNLVGVDFCEQMV 60
Query: 129 -----------------------------------------PLWGFEEREKLMVFYERAS 147
+ +
Sbjct: 61 KETNPGVYAKAEKTAAPGADLHGYRTIADIMKALNPFVGSFYREALQMSRMTREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTV 207
G +H + PGGV +L D + + + L F +
Sbjct: 121 GRHVHPSTLYPGGVGTVPTVQLFTDYLVRLMKYVEFMKKVVPLHDDLFNFFYEALPGYEE 180
Query: 208 KLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
G G + + +K + + + +
Sbjct: 181 VGRRRVLLGCWGSFNNPAVCDYSYKKMTEWGRAMYVTPGVVV 222
>gi|296034331|gb|ADG85037.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 466
Score = 51.1 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 7/52 (13%), Positives = 13/52 (25%), Gaps = 1/52 (1%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
K + E EA +G +++ K P +
Sbjct: 399 KTWNEFKVPKDAIGCGFHEAVRGVLSHHMVIR-DGKIANYHPYPPTPWNASP 449
Score = 44.9 bits (105), Expect = 0.023, Method: Composition-based stats.
Identities = 17/197 (8%), Positives = 35/197 (17%), Gaps = 46/197 (23%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP- 128
+ N A G++ P + I L + H +
Sbjct: 1 GICGDNHATCAVYAQNMAFGVKPPHIAEWITNLGEAAEYMFDHNIFQDNLVGVDFCERMV 60
Query: 129 -----------------------------------------PLWGFEEREKLMVFYERAS 147
+
Sbjct: 61 KETNPGVWDRAQRTLAPNADKHGYRTIGDILVSLNPFTGEFYREALAMSRLTREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIP----PELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVN 203
G +H + PGGV + + + + + + DL
Sbjct: 121 GRHVHPSTLYPGGVGTVPTVQLFTDYIVRLMKYVEFMKKVVPLHDDLFDFWYEALPGYEE 180
Query: 204 IGTVKLEDAWGWGFSGV 220
+G ++ F
Sbjct: 181 VGRRRVLLGCWGSFQNP 197
>gi|296034421|gb|ADG85082.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 464
Score = 51.1 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 7/49 (14%), Positives = 14/49 (28%), Gaps = 1/49 (2%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K ++E EA +G +++ K P +
Sbjct: 399 KTWSEFSVPQEAIGCGFHEAVRGVLSHHVVIR-DGKIANYHPYPPTPWN 446
Score = 43.8 bits (102), Expect = 0.052, Method: Composition-based stats.
Identities = 20/222 (9%), Positives = 41/222 (18%), Gaps = 42/222 (18%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP- 128
+ N A G+ P + I L + H +
Sbjct: 1 GICGDNHATCATYAQNMAFGVRPPAMAEWIVNLGEAAEYMFDHNIFQDNLVGVDFCEQMV 60
Query: 129 -----------------------------------------PLWGFEEREKLMVFYERAS 147
+ +
Sbjct: 61 KETNPGVYAKAEKTAAPGADLHGYRTIADIMKALNPFVGSFYREALQMSRMTREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTV 207
G +H + PGGV +L D + + + L F +
Sbjct: 121 GRHVHPSTLYPGGVGTVPTVQLFTDYLVRLMKYVEFMKKVVPLHDDLFNFFYEALPGYEE 180
Query: 208 KLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
G G + + +K + + + +
Sbjct: 181 VGRRRVLLGCWGSFNNPAVCDYSYKKMTEWGRAMYVTPGVVV 222
>gi|2852668|gb|AAC02194.1| periplasmic (NiFe) hydrogenase large subunit [unidentified
eubacterium K6S1]
Length = 124
Score = 50.7 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 8/51 (15%), Positives = 18/51 (35%)
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
V A V+ + + IP +++R L + H+++
Sbjct: 1 VCTYVHALASTRCVDNAVKVNIPANARMMRNLVMGAQYLHDHIVHFYHLHA 51
>gi|296034355|gb|ADG85049.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
gi|296034361|gb|ADG85052.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 462
Score = 50.7 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 1/60 (1%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K +E K + + G EA +G +++ K P +
Sbjct: 386 KALVEIRAGRTKTWEKFTVPDEGIGVGFTEAVRGVLSHHMVIR-DGKTANYHPYPPTPWN 444
Score = 43.4 bits (101), Expect = 0.058, Method: Composition-based stats.
Identities = 21/197 (10%), Positives = 40/197 (20%), Gaps = 46/197 (23%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNV------------- 116
+ N G++ P G+ I L + H +
Sbjct: 1 GICGDNHATCSCYCQNMAYGVKPPHLGEWIVNLGEAAEYMFDHNIFQENLVGVDYCEKMV 60
Query: 117 ---------------TTQAMDVGALTP--------------PLWGFEEREKLMVFYERAS 147
A D G T + +
Sbjct: 61 GETNPGVLERANNTEAPHAADHGYRTIGDIMRSLNPFTGEFYREALQVSRMTREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIP----PELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVN 203
G +H + PGGV + + + + + + DL
Sbjct: 121 GRHVHPSTLYPGGVGTVATIQLMTDYLTRLMRYVEFMKKVVPMHDDLFDFFYEALPGYEE 180
Query: 204 IGTVKLEDAWGWGFSGV 220
+G ++ F
Sbjct: 181 VGNRRILLGCWGSFQDP 197
>gi|260505879|gb|ACX42341.1| NiFe-hydrogenase large subunit [Streptomyces sp. HP3]
Length = 429
Score = 50.7 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 9/75 (12%), Positives = 19/75 (25%), Gaps = 2/75 (2%)
Query: 291 ASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV-GEVYAAVEAPKGEFGVYLISDGG 349
++ +E + E + VP EA +G +++
Sbjct: 355 YFQAYAAAVALHCAEKGLEEVRAGRTQTWEKFEVPEESIGVGFTEAVRGVLSHHMVIR-D 413
Query: 350 NKPYRCKIRAPGYAH 364
K P +
Sbjct: 414 GKIANYHPYPPTPWN 428
>gi|2852672|gb|AAC02196.1| periplasmic (NiFe) hydrogenase large subunit [unidentified
eubacterium K6S4]
Length = 125
Score = 50.7 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 9/51 (17%), Positives = 19/51 (37%)
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
V A V+ + + IP+ +L+R L + H+++
Sbjct: 1 VCTYVHALASTRCVDNAVKVNIPVNARLMRNLVMGAQYLHDHIVHFYHLHA 51
>gi|257092363|ref|YP_003166004.1| putative hydrogenase expression/formation protein HupK [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257044887|gb|ACV34075.1| putative hydrogenase expression/formation protein HupK [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
Length = 333
Score = 50.3 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Query: 324 VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---QAMEFLCKGHQLA 378
V G A VE +G ++ G + R I AP + A G +A
Sbjct: 248 VGEGCGLARVETARGTLLHWIELAGD-RVGRYLIVAPTEWNFHPQGAFVREITGCPVA 304
>gi|260505891|gb|ACX42347.1| NiFe-hydrogenase large subunit [Streptomyces sp. PCB7]
Length = 429
Score = 50.3 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 9/75 (12%), Positives = 19/75 (25%), Gaps = 2/75 (2%)
Query: 291 ASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP-VGEVYAAVEAPKGEFGVYLISDGG 349
++ +E + E + VP EA +G +++
Sbjct: 355 YFQAYAAAVALHCAEKGLEEVRAGRTQTWEKFEVPDESIGVGFTEAVRGVLSHHMVIR-D 413
Query: 350 NKPYRCKIRAPGYAH 364
K P +
Sbjct: 414 GKIANYHPYPPTPWN 428
>gi|260505885|gb|ACX42344.1| NiFe-hydrogenase large subunit [Streptomyces sp. HP13]
Length = 410
Score = 50.3 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 8/48 (16%), Positives = 14/48 (29%), Gaps = 2/48 (4%)
Query: 320 EGYHVP-VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
E + VP EA +G +++ K P +
Sbjct: 364 EKFEVPDESIGVGFTEAVRGVLSHHMVIR-DGKIANYHPYPPTPWNAS 410
>gi|296034475|gb|ADG85109.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 463
Score = 50.3 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 8/60 (13%), Positives = 16/60 (26%), Gaps = 1/60 (1%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K +E K + + EA +G +++ K P +
Sbjct: 387 KALVEIRAGRTKTWEKFTVPDEAIGCGFTEAVRGVLSHHMVIR-DGKIANYHPYPPTPWN 445
Score = 43.8 bits (102), Expect = 0.045, Method: Composition-based stats.
Identities = 25/250 (10%), Positives = 53/250 (21%), Gaps = 15/250 (6%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ N G++ P G+ + L + H +
Sbjct: 1 GICGDNHCTCSVYCQNMAYGVKPPHLGEWLINLGEAAEYMFDHNIFQENLVGVDYCEKMV 60
Query: 130 LW----GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ E + G R A R + W
Sbjct: 61 SETNPSVLAKAENTQSPHADMHGYRTIADIMRALNPFTGEFYREALQVSRWTREMFC--- 117
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
L R + G + + + ++ + +
Sbjct: 118 -----LMEGRHVHPSTLYPGGIGTTATIQLMTDYMTRLMRYVEFMKSVVPMHDDLFDFFY 172
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQC---VNRLLGKNKVGPVSASDPKIVPPKRA 302
+ G R L+ + ++ + R V P D K+
Sbjct: 173 EALPGYDQVGLRRTLLGCWGSFQDPEVCNFAYKDMERWGDAMFVTPGVVIDGKLHTHSLV 232
Query: 303 DMKRSMESLI 312
D+ + L+
Sbjct: 233 DINLGIRILL 242
>gi|296034467|gb|ADG85105.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 467
Score = 50.3 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 10/93 (10%), Positives = 24/93 (25%), Gaps = 2/93 (2%)
Query: 275 QCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVE 334
Q ++ L +N+ + + K E + ++ E
Sbjct: 362 QPLSNALERNRARTYFQAYAAACALYFVE-KGLAEVRAGRTQTWSPFTVPDEAISCGFTE 420
Query: 335 APKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
A +G +++ K P +
Sbjct: 421 AVRGVLSHHMVIK-NGKIANYHPYPPTPWNASV 452
Score = 44.6 bits (104), Expect = 0.027, Method: Composition-based stats.
Identities = 22/197 (11%), Positives = 39/197 (19%), Gaps = 46/197 (23%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNV------------- 116
+ N A G+ P + I L + H L
Sbjct: 1 GICGDNHATCSVYAQNMAYGVRPPALAEWILNLGEAAEYMFDHNLYQENLVGVDYCEKMV 60
Query: 117 ---------------TTQAMDVGALTP--------------PLWGFEEREKLMVFYERAS 147
A D G T + +
Sbjct: 61 RETNPGVLTLAERTEAPHAADHGYKTIADIMRSLNPLEGEFYREALQISRLTREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIP----PELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVN 203
G +H + PGGV + + + + + + DL
Sbjct: 121 GRHVHPSTLYPGGVGTVATVQLFTDYLTRLMRYVEFMKRVVPMHDDLFDFFYEALPGYEE 180
Query: 204 IGTVKLEDAWGWGFSGV 220
+G ++ F
Sbjct: 181 VGRRRVLLGCWGAFQDP 197
>gi|12597950|gb|AAC02197.2| periplasmic (NiFe) hydrogenase large subunit [unidentified
eubacterium K6S8]
Length = 122
Score = 50.3 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 8/51 (15%), Positives = 18/51 (35%)
Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
V A V+ + + IP +++R L + H+++
Sbjct: 1 VCTYVHALASTRCVDNAVKVNIPANARMMRNLVMASQYLHDHIVHFYHLHA 51
>gi|296034411|gb|ADG85077.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 464
Score = 50.3 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 9/78 (11%), Positives = 22/78 (28%), Gaps = 2/78 (2%)
Query: 291 ASDPKIVPPKRADMKRSMESLIH-HFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGG 349
+++++ +L H + +T+ EA +G +L+
Sbjct: 373 YFQAYAAAVALHFVEKALATLHAGHTQTWTDFKVPDQSIGCGFHEAVRGVLSHHLVIR-D 431
Query: 350 NKPYRCKIRAPGYAHLQA 367
K P +
Sbjct: 432 GKIANYHPYPPTPWNASP 449
Score = 49.6 bits (117), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/215 (11%), Positives = 42/215 (19%), Gaps = 49/215 (22%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA---- 125
+ N A A G++ P + I L + H L
Sbjct: 1 GICGDNHATAAVYAQNMAFGVKPPHLAEWIINLGEAAEYMFDHNLFQDNLVGVDFCEQMV 60
Query: 126 --------------------------------------LTPPLWGFEEREKLMVFYERAS 147
T + +
Sbjct: 61 KETNPTLLAKAESTAARGASIHGYRTIADIMRSLNPFSGTFYREALQMSRLAREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS----DLLTGNRIFKQRNVN 203
G +H + PGGV +L D + + + DL
Sbjct: 121 GRHVHPSTLYPGGVGTVPTVQLFTDYLVRLMKYVEFMKRVVPLHDDLFDFFLDGLPGYDQ 180
Query: 204 IGTVKLEDAWGWGFSGVM---IRGSGAAWDLRKSQ 235
+G ++ F R G + R
Sbjct: 181 VGRRRILLGCWGSFQNPETCDFRYEGMSAWGRDMF 215
>gi|2852680|gb|AAC02200.1| periplasmic (NiFe) hydrogenase large subunit [unidentified
eubacterium K5S12/14]
Length = 124
Score = 50.3 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 7/50 (14%), Positives = 17/50 (34%)
Query: 72 APMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A V+ + + IP +++R L + H+++
Sbjct: 1 CTYVHALASTRCVDNAVKVNIPANARMMRNLVMAAQYLHDHIVHFYHLHA 50
>gi|255551153|ref|XP_002516624.1| conserved hypothetical protein [Ricinus communis]
gi|223544226|gb|EEF45748.1| conserved hypothetical protein [Ricinus communis]
Length = 90
Score = 49.9 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/32 (59%), Positives = 25/32 (78%)
Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVE 36
K ++FT+NF PQHP HGV R LE++GE+VE
Sbjct: 7 KIKNFTLNFKPQHPTTHGVSRSALEMNGEVVE 38
>gi|218660595|ref|ZP_03516525.1| uptake hydrogenase large subunit [Rhizobium etli IE4771]
Length = 178
Score = 49.9 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 8/71 (11%), Positives = 20/71 (28%)
Query: 277 VNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAP 336
+ R + + + K ++ +S H + + EAP
Sbjct: 94 LGRTAARALDSSWAGHQMRYFQNKLIANIKAGDSSAAHVDKWKPETWPREVKAVGFTEAP 153
Query: 337 KGEFGVYLISD 347
+G ++
Sbjct: 154 RGALAHWIKIK 164
>gi|296034455|gb|ADG85099.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 463
Score = 49.9 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 8/60 (13%), Positives = 16/60 (26%), Gaps = 1/60 (1%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K +E K + + EA +G +++ K P +
Sbjct: 387 KALVEIRAGRTKTWEKFEVPDEAIGCGFTEAVRGVLSHHMVIR-DGKIANYHPYPPTPWN 445
Score = 45.7 bits (107), Expect = 0.014, Method: Composition-based stats.
Identities = 26/252 (10%), Positives = 55/252 (21%), Gaps = 15/252 (5%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ N G++ P G+ + L + H +
Sbjct: 1 GICGDNHCTCSVYTQNMAYGVQPPHLGEWLINLGEAAEYMFDHNIFQENLVGVDFCEKMV 60
Query: 130 LW----GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ E + G R A R + W
Sbjct: 61 SETNPSVLAKAENTQAPHADMHGYRTIADIMRALNPFTGDFYREALQVSRWTREMFC--- 117
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
L R + G + + + + ++ + +
Sbjct: 118 -----LMEGRHVHPSTLYPGGIGTTATIQLMTDYMTRLMRYVEFMKKVVPMHDDLFDFFY 172
Query: 246 DIPIGKHGDCYDRYLVRMMEMRESVKIIRQC---VNRLLGKNKVGPVSASDPKIVPPKRA 302
+ G R L+ + ++ + R V P D K+
Sbjct: 173 EALPGYDQVGLRRTLLGCWGSFQDPEVCNFAYKDMERWGDAMFVTPGVVIDGKLHTHSLV 232
Query: 303 DMKRSMESLIHH 314
D+ + L+ H
Sbjct: 233 DINLGIRILLGH 244
>gi|330998858|ref|ZP_08322585.1| conserved domain protein [Parasutterella excrementihominis YIT
11859]
gi|329576072|gb|EGG57591.1| conserved domain protein [Parasutterella excrementihominis YIT
11859]
Length = 364
Score = 49.9 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 51/380 (13%), Positives = 96/380 (25%), Gaps = 41/380 (10%)
Query: 22 GVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYA 81
G +R +L DG V V R EKL+ K A+ L + P +Q A A
Sbjct: 5 GAIRFVLTTDGCSVSDVSIEPAKELR-IEKLLCGKRVEDALALLPPLFALCPDSQTAAAA 63
Query: 82 LAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLW-GFEEREKLM 140
+A + + + + I + Q + RE +
Sbjct: 64 VACDVAQNSVPSQEVLVKARFANHLELINEGVRFFALQCAGEDYRAAKIKSVIRVRELVS 123
Query: 141 VFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQR 200
E Y ++ E D F + DL G +
Sbjct: 124 ELREMP--------YEDQTKRNKLWSELRGEVSYLLLDGFSESWEQ--DLFNGTITPSKD 173
Query: 201 NVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYL 260
++ K+ G++ + A+ L+ + C+ + + R
Sbjct: 174 SLTAFFDKISSHRSRGYTSGPLLDKPTAFILQALKERGCWKNGSLESDVRSLTGPVARMR 233
Query: 261 VRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTE 320
V LL + + + + A LI
Sbjct: 234 KNP------------TVAGLLMSDGNTNYTRFVARFIEVLSAA------DLIRMPLETIA 275
Query: 321 GYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---QAMEFLCKGHQL 377
+ G + V+ +G +I P ++ + + +
Sbjct: 276 AMELGKGNAVSLVQNSRGILLHAAKII-DGVIENYRILTPTEINVVDSEWFKKTLLNLKA 334
Query: 378 AD-------VSAILGSLDIV 390
D + S D
Sbjct: 335 KDAEELKKLAELTILSFDPC 354
>gi|296034349|gb|ADG85046.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 464
Score = 49.9 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 8/60 (13%), Positives = 15/60 (25%), Gaps = 1/60 (1%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K +E K + EA +G +++ K P +
Sbjct: 386 KALVEIRAGRTKTWERFEVPNESIGCGFTEAVRGVLSHHMVIR-DGKIANYHPYPPTPWN 444
Score = 44.9 bits (105), Expect = 0.022, Method: Composition-based stats.
Identities = 23/197 (11%), Positives = 41/197 (20%), Gaps = 46/197 (23%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNV------------- 116
+ N A G++ P G+ I L + H +
Sbjct: 1 GICGDNHATCSCYAQNMAYGVKPPHLGEWIVNLGEAAEYMFDHNIFQENLVGVDYCERMV 60
Query: 117 ---------------TTQAMDVGALTP--------------PLWGFEEREKLMVFYERAS 147
A + G T + +
Sbjct: 61 SETNPGVLEKANNTEAPHASEHGYRTIGDIMRSLNPFTGEFYREALQVSRYTREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS----DLLTGNRIFKQRNVN 203
G +H + PGGV +L+ D + + + DL
Sbjct: 121 GRHVHPSTLYPGGVGTVATIQLMTDYMTRLMRYIEFIKKVVPMHDDLFDFFYEALPGYEQ 180
Query: 204 IGTVKLEDAWGWGFSGV 220
+G + F
Sbjct: 181 VGLRRTLLGCWGSFQDP 197
>gi|12597948|gb|AAC02192.2| periplasmic (NiFe) hydrogenase large subunit [Desulfovibrio
vulgaris]
Length = 127
Score = 49.9 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 9/57 (15%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 70 YVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
V A +V+ +G++ +P +IR L + H+++
Sbjct: 1 GVCTYVHALASVRSVDNAVGVDKVLPHNATIIRNLVMAAQFMHDHIVHFYHLHALDF 57
>gi|296034309|gb|ADG85026.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 462
Score = 49.9 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 7/96 (7%), Positives = 26/96 (27%), Gaps = 2/96 (2%)
Query: 270 VKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV-GE 328
+++ + + + +++++ + + VP
Sbjct: 350 MELEWHVPEKSNAVERDRARTYHQAYSALVGLHCLEKALGEIRAGRTKSWSDFKVPEEAV 409
Query: 329 VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
EA +G +++ K + P +
Sbjct: 410 SVGFHEAARGVLSHHMVIRE-GKIANYQPYPPTPWN 444
Score = 46.9 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 22/197 (11%), Positives = 34/197 (17%), Gaps = 46/197 (23%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP- 128
+ N L G++ P G L + H + A
Sbjct: 1 GICGDNHCTCSCLNQNMAYGVKPPKLGDYAYNLAESADFMFDHAIFNDCMANVDFCEQMV 60
Query: 129 -----------------------------------------PLWGFEEREKLMVFYERAS 147
L + Y
Sbjct: 61 KETNPTLLKKAEQTASPHGDIHGYKTIADIMRALNPFTGSFYLETLQVARYTREMYCLFG 120
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS----DLLTGNRIFKQRNVN 203
G H + PGGV I + D + + DL
Sbjct: 121 GRHTHPSTIMPGGVSAHITHQTCTDYYVRLMRYMEYVKRTVPMHDDLYDFFLQELPGYDM 180
Query: 204 IGTVKLEDAWGWGFSGV 220
+G + F
Sbjct: 181 VGYRDTDLVCWGCFDNP 197
>gi|326403380|ref|YP_004283461.1| hypothetical protein ACMV_12320 [Acidiphilium multivorum AIU301]
gi|325050241|dbj|BAJ80579.1| hypothetical protein ACMV_12320 [Acidiphilium multivorum AIU301]
Length = 427
Score = 49.6 bits (117), Expect = 8e-04, Method: Composition-based stats.
Identities = 34/162 (20%), Positives = 56/162 (34%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
F + GP + ++ + R++ G HR L+ K+ A + RL
Sbjct: 130 FQVGQGPVSGLIARPVHRRFTIEAGRIVRLEHRHGYAHRDVAALLHGKSPRAAARFAARL 189
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
A + A+A A E P R +R EI ++ +HLL + G
Sbjct: 190 AGDAVVAHALAFARAAEAAGDGAAPPRAAALRAAMLEIEQVTAHLLALAGTLDIAGHAGL 249
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELV 170
R+ + G R+ PGG+ D E +
Sbjct: 250 AARLGRARDDIAAAVAVLFGHRLMMDVVIPGGIDVDARMEAL 291
>gi|296034409|gb|ADG85076.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 466
Score = 49.6 bits (117), Expect = 8e-04, Method: Composition-based stats.
Identities = 8/49 (16%), Positives = 14/49 (28%), Gaps = 1/49 (2%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K +T EA +G +++ G K P +
Sbjct: 399 KTFTPFKVPDEAIGCGFHEAVRGVLSHHMVIRG-GKVANYHPYPPTPWN 446
Score = 43.4 bits (101), Expect = 0.057, Method: Composition-based stats.
Identities = 26/250 (10%), Positives = 58/250 (23%), Gaps = 15/250 (6%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ N A G++ P + I L + H +
Sbjct: 1 GICGDNHATCSVYAQNMAYGVKPPALAEWIVNLGEAAEYMFDHNIFQDNLVGVDFCEMMV 60
Query: 130 LW----GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+E ++ + G + A + + +
Sbjct: 61 KETNPGVWELAKRTPAPNAKLHGYKTIADIMTSLNPFEGEFYRETLQVSRYTREMFC--- 117
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
L R + G V + ++ + R ++ + +
Sbjct: 118 -----LMEGRHVHPSTLYAGGVGTVPSIQLFTDYMVRLMKYVEFMKRVVPLHDDLFDFFY 172
Query: 246 DIPIGKHGDCYDRYLVRMMEMRE---SVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
G R L+ + + +N+ V P D K+V
Sbjct: 173 MALPGYEEVGRRRILLGCWGSFQDPDVCDYDYKTMNKWGKAMYVTPGVVVDGKLVTTNLV 232
Query: 303 DMKRSMESLI 312
D+ + L+
Sbjct: 233 DINLGIRILL 242
>gi|296034327|gb|ADG85035.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 462
Score = 49.6 bits (117), Expect = 8e-04, Method: Composition-based stats.
Identities = 8/60 (13%), Positives = 15/60 (25%), Gaps = 1/60 (1%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K +E K + EA +G +++ K P +
Sbjct: 386 KALVEIRAGRTKTWERFEVPNESIGCGFTEAVRGVLSHHMVIR-DGKIANYHPYPPTPWN 444
Score = 44.9 bits (105), Expect = 0.024, Method: Composition-based stats.
Identities = 23/197 (11%), Positives = 41/197 (20%), Gaps = 46/197 (23%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNV------------- 116
+ N A G++ P G+ I L + H +
Sbjct: 1 GICGDNHATCSCYAQNMAYGVKPPHLGEWIVNLGEAAEYMFDHNIFQENLVGVDYCERMV 60
Query: 117 ---------------TTQAMDVGALTP--------------PLWGFEEREKLMVFYERAS 147
A + G T + +
Sbjct: 61 SETNPGVLEKANNTEAPHASEHGYRTIGDIMRSLNPFTGEFYREALQVSRYTREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS----DLLTGNRIFKQRNVN 203
G +H + PGGV +L+ D + + + DL
Sbjct: 121 GRHVHPSTLYPGGVGTVATIQLMTDYMTRLMRYIEFIKKVVPMHDDLFDFFYEALPGYEQ 180
Query: 204 IGTVKLEDAWGWGFSGV 220
+G + F
Sbjct: 181 VGLRRTLLGCWGSFQDP 197
>gi|296034405|gb|ADG85074.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 452
Score = 49.6 bits (117), Expect = 8e-04, Method: Composition-based stats.
Identities = 7/49 (14%), Positives = 13/49 (26%), Gaps = 1/49 (2%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K + E EA +G +++ K P +
Sbjct: 387 KTWLEFSVPQEAIGCGFHEAVRGVLSHHVVIR-DGKIANYHPYPPTPWN 434
>gi|260505881|gb|ACX42342.1| NiFe-hydrogenase large subunit [Streptomyces sp. HP9]
Length = 428
Score = 49.6 bits (117), Expect = 8e-04, Method: Composition-based stats.
Identities = 11/86 (12%), Positives = 23/86 (26%), Gaps = 2/86 (2%)
Query: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
L +N+ + V A+ K E + + + EA +G
Sbjct: 345 NALERNRARTYFQAYAAAVALHCAE-KGLAEVRAGRTQTWEKFEVPDESIGVGFTEAVRG 403
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAH 364
+++ K P +
Sbjct: 404 VLSHHMVIR-DGKIANYHPYPPTPWN 428
>gi|296034423|gb|ADG85083.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 466
Score = 49.6 bits (117), Expect = 8e-04, Method: Composition-based stats.
Identities = 8/49 (16%), Positives = 14/49 (28%), Gaps = 1/49 (2%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K +T EA +G +++ G K P +
Sbjct: 399 KTFTPFKVPDEAIGCGFHEAVRGVLSHHMVIRG-GKVANYHPYPPTPWN 446
Score = 43.4 bits (101), Expect = 0.062, Method: Composition-based stats.
Identities = 26/250 (10%), Positives = 58/250 (23%), Gaps = 15/250 (6%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ N A G++ P + I L + H +
Sbjct: 1 GICGDNHATCSVYAQNMAYGVKPPALAEWIVNLGEAAEYMFDHNIFQDNLVGVDFCEMMV 60
Query: 130 LW----GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+E ++ + G + A + + +
Sbjct: 61 KETNPGVWELAKRTPAPNAKLHGYKTIADIMTSLNPFEGEFYRETLQVSRYTREMFC--- 117
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
L R + G V + ++ + R ++ + +
Sbjct: 118 -----LMEGRHVHPSTLYAGGVGTVPSIQLFTDYMVRLMKYVEFMKRVVPLHDDLFDFFY 172
Query: 246 DIPIGKHGDCYDRYLVRMMEMRE---SVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
G R L+ + + +N+ V P D K+V
Sbjct: 173 MALPGYEEVGRRRILLGCWGSFQDPDVCDYDYKTMNKWGKAMYVTPGVVVDGKLVTTNLV 232
Query: 303 DMKRSMESLI 312
D+ + L+
Sbjct: 233 DINLGIRILL 242
>gi|115523261|ref|YP_780172.1| coenzyme F420-reducing hydrogenase alpha subunit-like protein
[Rhodopseudomonas palustris BisA53]
gi|115517208|gb|ABJ05192.1| coenzyme F420-reducing hydrogenase alpha subunit-like protein
[Rhodopseudomonas palustris BisA53]
Length = 370
Score = 49.6 bits (117), Expect = 9e-04, Method: Composition-based stats.
Identities = 41/360 (11%), Positives = 80/360 (22%), Gaps = 48/360 (13%)
Query: 48 GTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLG-IEIPIRGQLIRVLYSEI 106
G +L E + +L + Q A A+ G + P R
Sbjct: 33 GIGRLAEGRDGDAVAALVPQLFALCAQAQGAAIFTALAAARGDVIAPDRAA--------- 83
Query: 107 GRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIP 166
A T + E L +G + D
Sbjct: 84 ------------------AQTGAVLAERLVELLRGTITSLAG-PSLPCFVPALRQVIDAS 124
Query: 167 PELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSG 226
D+ + + L F L + +
Sbjct: 125 RRFDGVALPAVDAVAAIEAGLEALGLSAGCFDD--DESYQRWLALSSPLAELHRPLVVDD 182
Query: 227 AAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQC----VNRLLG 282
+ + P + + + G + + E+ + R + L
Sbjct: 183 SEFGAVALDPLAADDDALIGTALQRSGPHFASLPDLDGRLPETGALARNADHPLIAALGN 242
Query: 283 KNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGV 342
++ P E++ + G AAVE +G
Sbjct: 243 GLGARLLARLIEIRATPALLRALLRGEAMPIDPISSR---QIAPGIGLAAVECARGRLHH 299
Query: 343 YLISDGGNKPYRCKIRAPGYAHL---QAMEFLCKGHQLAD-------VSAILGSLDIVFG 392
+ D + I AP + + + L D V+ ++ + D
Sbjct: 300 LVALDRQGLVSQFAILAPTEWNFHPRGPLFRALQNLALRDDDADRARVARLVAAFDPCVA 359
>gi|296034435|gb|ADG85089.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 465
Score = 49.6 bits (117), Expect = 9e-04, Method: Composition-based stats.
Identities = 6/52 (11%), Positives = 13/52 (25%), Gaps = 1/52 (1%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
K + E EA +G +++ + P +
Sbjct: 400 KTWNEYKVPREAISCGFHEAVRGVLSHHMVIR-DGRIANYHPYPPTPWNASP 450
Score = 46.9 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 21/197 (10%), Positives = 37/197 (18%), Gaps = 46/197 (23%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP- 128
+ N A G++ P + I L + H L
Sbjct: 1 GICGDNHATCAVYAQNMAFGVKPPHLAEWIINLGEAAEYMFDHNLFQDNLVGVDFCEQMV 60
Query: 129 -----------------------------------------PLWGFEEREKLMVFYERAS 147
L + +
Sbjct: 61 AETNPGVLALAQKTEAPHASIHGFRTIADIMRALNPFVGAFYLEALQMSRLTREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS----DLLTGNRIFKQRNVN 203
G +H + PGGV ++ D + L + DL
Sbjct: 121 GRHVHPSTLYPGGVGTVPSVQVFNDYLVRLLKYIDFLKQLVPLHDDLFDFFYQALPGYEE 180
Query: 204 IGTVKLEDAWGWGFSGV 220
+G ++ F
Sbjct: 181 VGRRRVMLGCWGSFQNP 197
>gi|296034367|gb|ADG85055.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 465
Score = 49.6 bits (117), Expect = 9e-04, Method: Composition-based stats.
Identities = 24/197 (12%), Positives = 35/197 (17%), Gaps = 46/197 (23%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP- 128
+ N L G++ P G L I H + A
Sbjct: 1 GICGDNHCTCSCLNQNMAYGVKPPKLGDYAFNLAETADFIFDHAIFNDCMANVDFCEQMV 60
Query: 129 -----------------------------------------PLWGFEEREKLMVFYERAS 147
L Y
Sbjct: 61 KETNPSVLVKAEQTMAPGSNFHGYRTIADIMRALNPFTGDFYLETLHVARYTREMYCLLG 120
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIG----CWCDSFPSALNDISDLLTGNRIFKQRNVN 203
G H + PGG DI + + D + D ++ DL
Sbjct: 121 GRHCHPSTIMPGGCSADITHQTLTDYYVRLMKYMDYVKRSVPMHDDLYDFFYEALPGYER 180
Query: 204 IGTVKLEDAWGWGFSGV 220
+G F
Sbjct: 181 VGYRDTNLVCWGSFDDP 197
Score = 46.1 bits (108), Expect = 0.009, Method: Composition-based stats.
Identities = 6/52 (11%), Positives = 13/52 (25%), Gaps = 1/52 (1%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
K + EA +G +++ K + P +
Sbjct: 400 KSWNSFTVPDEAVSVGFHEAVRGVLSHHMVIR-DGKVANYQPFPPTPWNASV 450
>gi|296034397|gb|ADG85070.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 462
Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 11/93 (11%), Positives = 26/93 (27%), Gaps = 4/93 (4%)
Query: 274 RQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVY--A 331
R+ R + + +++++ + E + VP E
Sbjct: 354 RKIPRRSNAIERNWARTYFQAYAAGIALHQIEKALAEVRAGRTKTWEPFKVPK-EAVSCG 412
Query: 332 AVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
EA +G +++ K P +
Sbjct: 413 WTEAVRGVLSHHMVI-QDGKIANYHPYPPTPWN 444
Score = 45.7 bits (107), Expect = 0.013, Method: Composition-based stats.
Identities = 24/283 (8%), Positives = 51/283 (18%), Gaps = 49/283 (17%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG----- 124
+ N G+ P G+ L + H +
Sbjct: 1 GICGDNHATCSVYNQNMAYGVAPPHLGEYCINLGECAEYMFDHNIFQENLVGVDYCEKMV 60
Query: 125 -------------------------------------ALTPPLWGFEEREKLMVFYERAS 147
A + +
Sbjct: 61 AETNPGVLDQANRTPSPNADAHGYKYIGDIMRALNPLAGEFYREALQVSRYTREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTV 207
G +H + PGG+ +L D + + + L F +
Sbjct: 121 GRHVHPSTLYPGGIGCIATVQLFTDYYTRLMRYVEFMKRVVPLHEDLFQFFYDAMPGYEE 180
Query: 208 KLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMM--- 264
G G + + + + + + D + +
Sbjct: 181 VGRRRVLLGCWGALNDPEHCDFTYANMTNWGRKMYVTPGVVVDGKLVTNDLVKINLGLRI 240
Query: 265 ----EMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
E V++ N V + +P
Sbjct: 241 LLGSSYYEDWAGKEVFVDKDPLGNPVDVRHPWNQHTIPKPAKR 283
>gi|296034311|gb|ADG85027.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 463
Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 8/60 (13%), Positives = 16/60 (26%), Gaps = 1/60 (1%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K +E K + + EA +G +++ K P +
Sbjct: 387 KALVEIRAGRTKTWEKFEVPDESIGCGFTEAVRGVLSHHMVIR-DGKIANYHPYPPTPWN 445
Score = 45.3 bits (106), Expect = 0.018, Method: Composition-based stats.
Identities = 29/252 (11%), Positives = 55/252 (21%), Gaps = 15/252 (5%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ N + GI+ P + + L + H +
Sbjct: 1 GICGDNHATCSCYTQQMAYGIQPPHLAEWLVNLGEAAEYMFDHNIFQENLVGVDFCEKMV 60
Query: 130 LW----GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+ E + G R A R + W
Sbjct: 61 SETNPGVLAKAENTQAPHADMHGYRTVADIMRALNPFTGEFYREALQVSRWTREMFC--- 117
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
L R + G V + + ++ + +
Sbjct: 118 -----LMEGRHVHPSTLYPGGVGTTATIQLMTDYMTRLMRYVEFMKSVVPMHDDLFDFFY 172
Query: 246 DIPIGKHGDCYDRYLVRMM---EMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+ G R L+ + E + + K V P D K+V
Sbjct: 173 EALPGYEKVGLRRTLLGCWGSFQDPEHCNFAYKDMENWGRKMFVTPGVVVDGKLVTTSLV 232
Query: 303 DMKRSMESLIHH 314
D+ + L+ H
Sbjct: 233 DINLGIRILLGH 244
>gi|291614881|ref|YP_003525038.1| hydrogenase expression/formation protein HupK [Sideroxydans
lithotrophicus ES-1]
gi|291584993|gb|ADE12651.1| putative hydrogenase expression/formation protein HupK
[Sideroxydans lithotrophicus ES-1]
Length = 360
Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 52/351 (14%), Positives = 96/351 (27%), Gaps = 41/351 (11%)
Query: 52 LIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILS 111
+++ K Q + L V Q A A++ + + R + E I
Sbjct: 33 MLKGKEPGQVLHIVPLLFSVCGRAQGAAAGAALQAAQQGVSAVSATVQRAIVCES--IQE 90
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
HL V + L F R + + A FR E
Sbjct: 91 HLWRVLLDWPKLLGLPRQEERFAA---WYAMLRRIAAGELDMAAFR---------QEFER 138
Query: 172 DIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDL 231
D + + S+L +++ + + + + A + RG+ AA +
Sbjct: 139 DYLGMPVAAWRGMASYSEL---QAWWRKADRPVAQLLGQLAG-------LGRGAHAASES 188
Query: 232 RKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSA 291
R + + G+ + M + E+ N +L
Sbjct: 189 RLLPAWTAAEASQ--VCAGRWDADFSARPDWMGKAAETGAWAYHADNPMLRD----VWQQ 242
Query: 292 SDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNK 351
S K + A M +E + + G+ A V +G ++ +
Sbjct: 243 SGSKPLTRLLARMLDVVEMASGNALPRLDAASPATGQGIAVVRTARGLLMHHVHV-AAER 301
Query: 352 PYRCKIRAPGYAHL---QAMEFLCKGHQLAD-------VSAILGSLDIVFG 392
+I AP + A +G D SLD
Sbjct: 302 VTEYEIVAPTEWNFHPAGAFAQDMRGMMEQDRGRLQRSAQIAALSLDPCVA 352
>gi|296034313|gb|ADG85028.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 462
Score = 49.2 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 8/63 (12%), Positives = 14/63 (22%), Gaps = 1/63 (1%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K E H + EA +G +++ K P +
Sbjct: 386 KALDEVRAGHTSTWRSFKVPDEAISVGFTEAVRGLLSHHMVIR-DGKIANYHPYPPTPWN 444
Query: 365 LQA 367
Sbjct: 445 ASV 447
Score = 38.8 bits (89), Expect = 1.4, Method: Composition-based stats.
Identities = 28/283 (9%), Positives = 55/283 (19%), Gaps = 49/283 (17%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNV------------- 116
+ N G+ P G+ I L + H +
Sbjct: 1 GICGDNHATCSVYNQNMAYGVAPPHLGEWIISLGEAAEYMFDHNIYQENLVGVDYCEKMV 60
Query: 117 ---------------TTQAMDVGALTP--------------PLWGFEEREKLMVFYERAS 147
A D G T + +
Sbjct: 61 RETNPGVLAQAERTEAPHAADHGYRTIADIMRSLNPLEGEFYREALQVSRSTREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTV 207
G +H + PGGV +L D + + + + F +
Sbjct: 121 GRHVHPSTLYPGGVGTIATVQLFTDYLSRLMRYVEFMKRVVPMHDDLFDFFYEALPGYQQ 180
Query: 208 KLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMME-- 265
G G + + + + + D + +
Sbjct: 181 VGRRRVLLGCWGAFNDPDYCDFRYETMSDWGRKMFVSPGVIVDGRLVTSDLVDINLGIRI 240
Query: 266 -----MRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+ + Q V N V + +P +
Sbjct: 241 LLGSSYYDDWQGQEQFVTHDPLGNPVDMRHPWNQHTIPHPQKR 283
>gi|134291351|ref|YP_001115120.1| hypothetical protein Bcep1808_5940 [Burkholderia vietnamiensis G4]
gi|134134540|gb|ABO58865.1| conserved hypothetical protein [Burkholderia vietnamiensis G4]
Length = 417
Score = 49.2 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 11/83 (13%), Positives = 24/83 (28%), Gaps = 16/83 (19%)
Query: 326 VGEVYAAVEAPKGEFGVYLIS--DGGNKPYRCKIRAPGYAHLQA---MEFLCKGHQL--- 377
GE A E +G ++ + ++ +P + + +
Sbjct: 310 PGEALAWCETARGVLIHWVRLVPGDAARVADYRVASPTEWNFHPDGTLAHALARVDVRPD 369
Query: 378 --------ADVSAILGSLDIVFG 392
A V A++G+ D
Sbjct: 370 GGGDAGLAARVGALMGAFDPCIA 392
>gi|296034461|gb|ADG85102.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 466
Score = 48.8 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 8/47 (17%), Positives = 13/47 (27%), Gaps = 1/47 (2%)
Query: 318 YTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
+T EA +G +L+ G K P +
Sbjct: 403 FTPFKVPDEAIGCGFHEAVRGVLSHHLVIRG-GKIANYHPYPPTPWN 448
Score = 44.2 bits (103), Expect = 0.036, Method: Composition-based stats.
Identities = 31/269 (11%), Positives = 70/269 (26%), Gaps = 18/269 (6%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ N A + G++ P G+ I L + H +
Sbjct: 1 GICGDNHATCSCYAQQMAYGVKPPPLGEWIVNLGEAAEYMFDHNIFQDNLVGVDFCEMMV 60
Query: 130 LW----GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+E+ ++ + + G R A + + +
Sbjct: 61 KETNPGVWEKAQRTEASHAKDHGYRTIADIMHALNPFEGEFYRETLQVSRYTREMFC--- 117
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
L R + G V + ++ A + R ++ + +
Sbjct: 118 -----LMEGRHVHPSTLYPGGVGTVPSIQVFTDYMVRLAHYAEFMKRCLPLHDDLFDFFY 172
Query: 246 DIPIGKHGDCYDRYLVRMMEMRE---SVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
+ G R L+ + + +++ V P D ++V
Sbjct: 173 EALPGYEQVGQRRVLLGCWGSFQDPDVCDYNYKTMDKWGDAMFVTPGIVVDGELVTHNLI 232
Query: 303 DMKRSMESLIHHFKLYTEGYHVPVGEVYA 331
D+ + L+ G + GEV+
Sbjct: 233 DINLGIRILLGSSYYEDWGEN---GEVFV 258
>gi|296034431|gb|ADG85087.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 464
Score = 48.8 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 8/49 (16%), Positives = 14/49 (28%), Gaps = 1/49 (2%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K +T EA +G +++ G K P +
Sbjct: 399 KTFTPFKVPDEAIGCGFHEAVRGVLSHHMVICG-GKVANYHPYPPTPWN 446
Score = 43.8 bits (102), Expect = 0.042, Method: Composition-based stats.
Identities = 26/250 (10%), Positives = 59/250 (23%), Gaps = 15/250 (6%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ N A G++ P + I L + H +
Sbjct: 1 GICGDNHATCSVYAQNMAYGVKPPALAEWIVNLGEAAEYMFDHNIFQDNLVGVDFCEMMV 60
Query: 130 LW----GFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALN 185
+E ++ + G + A + + +
Sbjct: 61 KETNPGVWELAKRTPAPNAKLHGYKTIADIMTSLNPFEGEFYRETLQVSRYTREMFC--- 117
Query: 186 DISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDF 245
L R + G V + ++ + R ++ + +
Sbjct: 118 -----LMEGRHVHPSTLYAGGVGTVPSIQLFTDYMVRLMKYVEFMKRVVPLHDDLFDFFY 172
Query: 246 DIPIGKHGDCYDRYLVRMMEMRE---SVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA 302
G R L+ + + +N+ V P D K+V
Sbjct: 173 MALPGYEEVGRRRILLGCWGSFQDPDVCDYDYKTMNKWGKAMYVTPGVVVDGKLVTTNLV 232
Query: 303 DMKRSMESLI 312
D+ ++ L+
Sbjct: 233 DINLNIRILL 242
>gi|2852652|gb|AAC02186.1| periplasmic (NiFe) hydrogenase large subunit [Desulfomicrobium
baculatum]
Length = 120
Score = 48.4 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 71 VAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
V A V+ +G++ +P +LIR L + H+++
Sbjct: 1 VCTYTHALASTRCVDNAVGVDANLPDNARLIRNLVLAAQFLHDHIVHFYHLHA 53
>gi|306481155|emb|CBN08523.1| coenzyme F420 hydrogenase, subunit alpha [uncultured prokaryote]
Length = 224
Score = 48.4 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 29/210 (13%), Positives = 58/210 (27%), Gaps = 17/210 (8%)
Query: 134 EEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD---L 190
+ R+ + G +H GG+ +I I F + +
Sbjct: 5 KMRKVGQYIVDVVGGEGIHPPNIVIGGMRNNITERAKSKIYYALKEFEKDAKVLYEKYVE 64
Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
L N + + ++G+ + G R + D+ + P Y +
Sbjct: 65 LVENFLEETGIPDLGSHEFSYLATHTTYGD--RYAINWDDVTEILPQRYYDNKEVGTSTS 122
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS--- 307
Y V + R +++ +G G + + R+
Sbjct: 123 IMIPLYGGVPVEVG--------PRARLSKFMGFKVKGNALEINIARAQENLGAVYRAFDI 174
Query: 308 MESLIHHFKLYTEGYHVPVGEVYAAVEAPK 337
++ L H K Y G EA +
Sbjct: 175 LDELNIHGKT-RADYEYKEGVGIGVHEAAR 203
>gi|296034379|gb|ADG85061.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 468
Score = 48.4 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 9/76 (11%), Positives = 21/76 (27%), Gaps = 4/76 (5%)
Query: 291 ASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVY--AAVEAPKGEFGVYLISDG 348
+++++ + E + VP E EA +G +++
Sbjct: 377 YFQAYAAGIALHQIEKALAEVRAGRTKTWEPFKVPK-EAVSCGWTEAVRGVLSHHMVI-Q 434
Query: 349 GNKPYRCKIRAPGYAH 364
K P +
Sbjct: 435 DGKIANYHPYPPTPWN 450
Score = 45.7 bits (107), Expect = 0.012, Method: Composition-based stats.
Identities = 24/283 (8%), Positives = 51/283 (18%), Gaps = 49/283 (17%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG----- 124
+ N G+ P G+ L + H +
Sbjct: 1 GICGDNHATCSVYNQNMAYGVAPPHLGEYCINLGECAEYMFDHNIFQENLVGVDYCEKMV 60
Query: 125 -------------------------------------ALTPPLWGFEEREKLMVFYERAS 147
A + +
Sbjct: 61 AETNPGVLDQANRTPSPNADAHGYKYIGDIMRALNPLAGEFYREALQVSRYTREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTV 207
G +H + PGG+ +L D + + + L F +
Sbjct: 121 GRHVHPSTLYPGGIGCIATVQLFTDYYTRLMRYVEFMKRVVPLHEDLFQFFYDAMPGYEE 180
Query: 208 KLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMM--- 264
G G + + + + + + D + +
Sbjct: 181 VGRRRVLLGCWGALNDPEHCDFTYANMTNWGRKMYVTPGVVVDGKLVTNDLVKINLGLRI 240
Query: 265 ----EMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
E V++ N V + +P
Sbjct: 241 LLGSSYYEDWAGKEVFVDKDPLGNPVDVRHPWNQHTIPKPAKR 283
>gi|2495448|sp|Q43959|HUPV_AZOCH RecName: Full=Hydrogenase expression/formation protein hupV
gi|551687|gb|AAA64454.1| hydrogenase-related protein [Azotobacter chroococcum]
Length = 342
Score = 48.4 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 10/76 (13%)
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---QAMEFLCKGHQLA--DV 380
GE + +G + D ++ AP + + G ++A D
Sbjct: 260 AGEGVGLAQTARGALLHRVCLDE-GTVGAWQLLAPTDWNFHEDGPLRRRLCGVRVAEEDA 318
Query: 381 SAILG----SLDIVFG 392
A+L ++D
Sbjct: 319 GALLRELILAVDPCVA 334
>gi|307825748|ref|ZP_07655965.1| Ni,Fe-hydrogenase I large subunit [Methylobacter tundripaludum
SV96]
gi|307733325|gb|EFO04185.1| Ni,Fe-hydrogenase I large subunit [Methylobacter tundripaludum
SV96]
Length = 401
Score = 48.0 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 20/148 (13%), Positives = 43/148 (29%), Gaps = 16/148 (10%)
Query: 258 RYLVRMMEMRESVKIIRQC----VNRLLGKNKVGPVSASDPKIVPPKRADM-KRSMESLI 312
R E + RQ ++ + G + +++ R + + I
Sbjct: 237 RIPRWQGRCFEVTLLNRQWSQPLISEMRRHYGNGLIVRMLARLLEVALIPFQLRQLLAQI 296
Query: 313 HHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLC 372
+ G A V+A +G L + + +I AP + +
Sbjct: 297 KNDAALPINNTASNGIGLAQVQAARGLLIHRLALR-QGRVHDYRIIAPTEWNFHPEGVVA 355
Query: 373 KGHQ------LAD----VSAILGSLDIV 390
+G + L D + ++D
Sbjct: 356 QGLKQLTAQSLNDLQRQAELYINAVDPC 383
>gi|148259650|ref|YP_001233777.1| Ni Fe-hydrogenase III large subunit-like protein [Acidiphilium
cryptum JF-5]
gi|146401331|gb|ABQ29858.1| Ni Fe-hydrogenase III large subunit-like protein [Acidiphilium
cryptum JF-5]
Length = 427
Score = 48.0 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 34/162 (20%), Positives = 56/162 (34%)
Query: 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRL 68
F + GP + ++ + R++ G HR L+ K+ A + RL
Sbjct: 130 FQVGQGPVSGLIARPVHRRFTIEAGRIARLEHRHGYAHRDVAALLHGKSPRAAARFAARL 189
Query: 69 DYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
A + A+A A E P R +R EI ++ +HLL + G
Sbjct: 190 AGDAVVAHALAFARAAEAAGDGAAPPRAAALRAAMLEIEQVTAHLLALAGTLDIAGHAGL 249
Query: 129 PLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELV 170
R+ + G R+ PGG+ D E +
Sbjct: 250 AARLGRARDDIAAAVAVLFGHRLMMDVVIPGGIDVDARMEAL 291
>gi|296034429|gb|ADG85086.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 462
Score = 48.0 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 10/96 (10%), Positives = 24/96 (25%), Gaps = 2/96 (2%)
Query: 270 VKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSM-ESLIHHFKLYTEGYHVPVGE 328
V + R + + +++++ E H K +
Sbjct: 350 VTYEWKIPRRSNALQRDRARTYFQAFAAACALHFVEQALAEIRAGHTKTWESFTVPDDAF 409
Query: 329 VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
EA +G +++ K P +
Sbjct: 410 SCGFTEAVRGVLSHHMVIK-DGKIANYHPYPPTPWN 444
Score = 41.5 bits (96), Expect = 0.22, Method: Composition-based stats.
Identities = 27/283 (9%), Positives = 54/283 (19%), Gaps = 49/283 (17%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLN-------------- 115
+ N G+ P + I L + H +
Sbjct: 1 GICGDNHATCSVYNQNMAYGVRPPHLAEWIINLGEAAEYMFDHNIFQENLVGVDFCERMV 60
Query: 116 --------------VTTQAMDVGALTP--------------PLWGFEEREKLMVFYERAS 147
A + G T + +
Sbjct: 61 GETNPGVLERANSTQAPHAAEHGYRTIGDIMRSLNPLEGEFYREALQVSRSTREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTV 207
G +H + PGGV +L D + + + + F +
Sbjct: 121 GRHVHPSTLYPGGVGTVATVQLFTDYLTRLMRYVEFMKRVVPMHDDLFDFFYEALPGYEE 180
Query: 208 KLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMME-- 265
G G + + R + + + + + +
Sbjct: 181 VGRRRVLLGCWGALNNPEYCDFTYRNMADWGRKMFVTPGVVVDGKLVTTSLVDINLGIRI 240
Query: 266 -----MRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
E + Q V N V + +P
Sbjct: 241 LLGSSYYEDWQGQEQFVTHDPLGNPVDRRHPWNQHTIPGPHKR 283
>gi|303256892|ref|ZP_07342906.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47]
gi|302860383|gb|EFL83460.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47]
Length = 364
Score = 48.0 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 51/380 (13%), Positives = 96/380 (25%), Gaps = 41/380 (10%)
Query: 22 GVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYA 81
G +R +L DG V V R EKL+ K A+ L + P +Q A A
Sbjct: 5 GAIRFVLTTDGCSVSDVSIEPAKELR-IEKLLCGKRVEDALALLPPLFALCPDSQTAAAA 63
Query: 82 LAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLW-GFEEREKLM 140
+A + + + + I + Q + RE +
Sbjct: 64 VACDVAQNSVPSQEVLVKARFANHLELINEGVRFFALQCAGEDYRAAKIKSVIRVRELVS 123
Query: 141 VFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQR 200
E Y ++ E D F + DL G +
Sbjct: 124 ELREMP--------YEDQTKRNKLWSELRGEVSYLLLDGFSESWEQ--DLFNGTITPSKD 173
Query: 201 NVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYL 260
++ K+ G++ + A+ L+ + C+ + + R
Sbjct: 174 SLTAFFDKISSHRSRGYTSGPLLDKPTAFILQALKERGCWKNGSLESDVRSLTGPVARMR 233
Query: 261 VRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTE 320
V LL + + + + A LI
Sbjct: 234 KNP------------TVAGLLMSDGNTNYTRFVARFIEVLSAA------DLICMPLETIA 275
Query: 321 GYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---QAMEFLCKGHQL 377
+ G + V+ +G +I P ++ + + +
Sbjct: 276 AMELGKGNAVSLVQNSRGILLHAAKII-DGVIENYRILTPTEINVVDSEWFKKTLLNLKA 334
Query: 378 AD-------VSAILGSLDIV 390
D + S D
Sbjct: 335 KDAEELKKLAELTILSFDPC 354
>gi|296034473|gb|ADG85108.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 469
Score = 48.0 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 8/63 (12%), Positives = 14/63 (22%), Gaps = 1/63 (1%)
Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K E K + EA +G +++ K P +
Sbjct: 393 KALAEIRAGRTKTWEPFSVPDEANSCGFTEAVRGVLSHHMVIR-NGKIANYHPYPPTPWN 451
Query: 365 LQA 367
Sbjct: 452 ASV 454
Score = 39.5 bits (91), Expect = 0.81, Method: Composition-based stats.
Identities = 28/284 (9%), Positives = 56/284 (19%), Gaps = 50/284 (17%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNV------------- 116
+ N + G+ P G+ I L + H +
Sbjct: 1 GICGDNHSVVSCYTQQMAYGVRPPNLGEWIVNLGEAAEYMFDHNIFQENLVGVDYCEKMV 60
Query: 117 ---------------TTQAMDVGALTP--------------PLWGFEEREKLMVFYERAS 147
+ G T + +
Sbjct: 61 AETNPGVLERANSAEAPHFTEHGYRTIGDIMRSLNPFSGEFYREALQVSRYTREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTV 207
G +H + PGGV +L D + + + + F +
Sbjct: 121 GRHVHPSTLYPGGVGTTATIQLFTDYITRLMRYVEFMKKVVPMHDDLWDFFYEALPGYEE 180
Query: 208 KLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYD--------RY 259
G G + + + + + + + R
Sbjct: 181 NGRRRILLGCWGAFQDPDVCNFAYKDMEDWGRRMFVTPGVVVDGKLVTNSLVDINLGIRI 240
Query: 260 LVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
L+ E + V R N V + +P
Sbjct: 241 LLGGSSYYEDWEDQEMFVTRDPLGNPVDRRHPWNQHTIPKPAKR 284
>gi|296034395|gb|ADG85069.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 462
Score = 48.0 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 11/93 (11%), Positives = 26/93 (27%), Gaps = 4/93 (4%)
Query: 274 RQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVY--A 331
+ R + + +++++ + E + VP E
Sbjct: 354 WKIPRRSNAIERNRARTYFQAYAAGIALHQIEKALAEVRAGRTKTWEPFKVPQ-EAVSCG 412
Query: 332 AVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
EA +G +++ G K P +
Sbjct: 413 WTEAVRGVLSHHMVIQG-GKIANYHPYPPTPWN 444
Score = 46.1 bits (108), Expect = 0.010, Method: Composition-based stats.
Identities = 24/283 (8%), Positives = 52/283 (18%), Gaps = 49/283 (17%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG----- 124
+ N G+ P G+ L + H +
Sbjct: 1 GICGDNHATCSVYNQNMAYGVAPPHLGEYCINLGECAEYMFDHNIFQENLVGVDYCEKMV 60
Query: 125 -------------------------------------ALTPPLWGFEEREKLMVFYERAS 147
A + +
Sbjct: 61 AETNPGVLDQANRTPSPNAEAHGYKYIGDIMRALNPLAGEFYREALQVSRYTREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTV 207
G +H + PGG+ +L D + + + L F +
Sbjct: 121 GRHVHPSTLYPGGIGCIATVQLFTDYYTRLMRYVEFMKRVVPLHEDLFQFFYDAMPGYEE 180
Query: 208 KLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMM--- 264
G G + + + + + + + D + +
Sbjct: 181 VGRRRVLLGCWGALNDPEHCDFSYQNMTNWGRKMYVTPGVVVDGKLVTNDLVKINLGLRI 240
Query: 265 ----EMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
E V++ N V + +P
Sbjct: 241 LLGSSYYEDWAGKEVFVDKDPLGNPVDVRHPWNQHTIPKPAKR 283
>gi|154246124|ref|YP_001417082.1| putative hydrogenase expression/formation protein HupK
[Xanthobacter autotrophicus Py2]
gi|154160209|gb|ABS67425.1| putative hydrogenase expression/formation protein HupK
[Xanthobacter autotrophicus Py2]
Length = 329
Score = 48.0 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 12/82 (14%), Positives = 25/82 (30%), Gaps = 13/82 (15%)
Query: 320 EGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA---MEFLCKGHQ 376
Y +P G A A +G G + + +I +P +L +E
Sbjct: 240 PTYDLPAGFGIAP--AARGLLGHGVRL-EAGRVAAYRILSPSAWNLAPGGLLERAFAALT 296
Query: 377 LAD------VSAILGSLDIVFG 392
D ++ +++
Sbjct: 297 -PDPTARRLAPLLVSAINPCVP 317
>gi|296034293|gb|ADG85018.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 464
Score = 47.6 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 6/52 (11%), Positives = 12/52 (23%), Gaps = 1/52 (1%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
K + EA +G +++ K P +
Sbjct: 397 KTWESFTVPDEAFSCGFTEAVRGVLSHHMVIKE-GKIANYHPYPPTPWNASV 447
Score = 42.2 bits (98), Expect = 0.12, Method: Composition-based stats.
Identities = 32/284 (11%), Positives = 60/284 (21%), Gaps = 51/284 (17%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSH----------------- 112
+ N G+ P G+ I L + H
Sbjct: 1 GICGDNHATCSVYNQNMAYGVHPPALGEWIINLGEAAEYMFDHNIFQENLVGVDYCERMV 60
Query: 113 ------LLNVTTQAMDVGALTP-------------------PLWGFEEREKLMVFYERAS 147
+L+ A + +
Sbjct: 61 KETNPGVLDKANHTEAPHAGEHGYKTIGDIMRALNPLEGEFYREALQVSRYTREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS----DLLTGNRIFKQRNVN 203
G +H + PGGV +L D + + + DL N
Sbjct: 121 GRHVHPSTLYPGGVGTTATIQLFTDYLTRLMRYVEFMKRVVPLHDDLFDFFYEAIPGYEN 180
Query: 204 IGTVKLEDAWGWGFSGVMI---RGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYL 260
+G + + R + RK+ +D + D
Sbjct: 181 VGLRRTLLICWGALNDPAHCDFRYEHMSNWGRKAF-VSPGVVVDGKLVTNDLVDINLGIR 239
Query: 261 VRMM-EMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
+ + +S + V R N V + +P +
Sbjct: 240 ILLGSSYYQSWEDQPMFVERDALGNPVDRNHPWNQTTIPQPQKR 283
>gi|12597949|gb|AAC02193.2| periplasmic (NiFe) hydrogenase large subunit [Desulfovibrio
oxyclinae]
Length = 132
Score = 47.6 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 8/58 (13%), Positives = 18/58 (31%), Gaps = 2/58 (3%)
Query: 69 DYVAPMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
V V+ +G++ +P +IR L + H+++
Sbjct: 2 CGVCTYVHALGSIRCVDNTVGVDKVLPHNATIIRNLVLASQFMHDHIVHFYHLHALDF 59
>gi|2852682|gb|AAC02201.1| periplasmic (NiFe) hydrogenase large subunit [unidentified
eubacterium K5S5]
Length = 124
Score = 47.2 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 72 APMNQEHAYALAVEKLLGIE--IPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
A V+ +G++ +P +LIR L + H+++
Sbjct: 1 CTYTHALASTRCVDNAVGVDKNLPDNARLIRNLVLAAQFLHDHIVHFYHLHA 52
>gi|296137501|ref|YP_003644743.1| Ni,Fe-hydrogenase I large subunit [Thiomonas intermedia K12]
gi|295797623|gb|ADG32413.1| Ni,Fe-hydrogenase I large subunit [Thiomonas intermedia K12]
Length = 370
Score = 47.2 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 10/74 (13%), Positives = 23/74 (31%), Gaps = 14/74 (18%)
Query: 329 VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH-------LQAMEFLCKGHQLADVS 381
V++ +G + D + +I AP + Q + + G D
Sbjct: 280 GLGWVDSARGRLIHHAELDAHQRIAHYRILAPTEWNSHPQGLAAQLLAGIGPGTL--DAV 337
Query: 382 -----AILGSLDIV 390
++ ++D
Sbjct: 338 QKQARLVVQAIDPC 351
>gi|295984000|gb|ADG63471.1| NiFe-hydrogenase large subunit [Streptomyces sp. AP1]
Length = 429
Score = 46.9 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 11/72 (15%), Positives = 18/72 (25%), Gaps = 2/72 (2%)
Query: 291 ASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP-VGEVYAAVEAPKGEFGVYLISDGG 349
++ +M + E Y VP EA +G +L+
Sbjct: 358 YFIAYAAAMALQFLEEAMGLVRAGETKVFENYEVPDEAIGCGFHEAVRGVLSHHLVIK-D 416
Query: 350 NKPYRCKIRAPG 361
K P
Sbjct: 417 KKIANYHPYPPT 428
>gi|213585058|ref|ZP_03366884.1| bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Salmonella
enterica subsp. enterica serovar Typhi str. E98-0664]
Length = 57
Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 256 YDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHF 315
Y R ++++ E+R+S++I++QC++ + GP A P PP + + +E+LI HF
Sbjct: 1 YTRVMLKVEELRQSLRILQQCLDNM----PEGPFKADHPLTTPPPKERTLQHIETLITHF 56
>gi|306481157|emb|CBN08524.1| coenzyme F420 hydrogenase, subunit alpha [uncultured prokaryote]
Length = 230
Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 25/209 (11%), Positives = 50/209 (23%), Gaps = 15/209 (7%)
Query: 134 EEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTG 193
R+ + + G +H GG+ +I + + ++ + T
Sbjct: 11 RMRKVGQLVVDIVGGEGIHPPNIVIGGMRTNITERAKSRLYYALRQYEKDAYELYEKYTE 70
Query: 194 NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAA--WDLRKSQP-YECYSELDFDIPIG 250
+ ++ IG L + G A WD P Y + +
Sbjct: 71 --LIERYLEEIGIPDLGAHEYPYIATHTTYGDRYAINWDDVTEIPAQRYYDDEEAKQTTT 128
Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
Y R + + + G + + R++E
Sbjct: 129 IQIPLYAGVPAEGG--------PRARMVKFGNFREGGSAMDINIARAQENLGAVYRALEI 180
Query: 311 LIHHFK--LYTEGYHVPVGEVYAAVEAPK 337
L G EA +
Sbjct: 181 LDELDLNGKTRAEVEYKDGFGIGVHEAAR 209
>gi|296034393|gb|ADG85068.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 463
Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 8/46 (17%), Positives = 14/46 (30%), Gaps = 4/46 (8%)
Query: 321 GYHVPVGEVY--AAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
+ VP E EA +G +++ K P +
Sbjct: 402 PFKVPE-EAVSCGFTEAVRGVLSHHMVIRE-GKIANYHPYPPTPWN 445
Score = 46.1 bits (108), Expect = 0.009, Method: Composition-based stats.
Identities = 31/283 (10%), Positives = 59/283 (20%), Gaps = 49/283 (17%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNV------------- 116
+ N G+ P G+ I L + H +
Sbjct: 1 GICGDNHATCSVYNQNMAYGVRPPHLGEWIINLGEAAEYMFDHNIFQENLVGVDYCEKMV 60
Query: 117 ---------------TTQAMDVGALTP--------------PLWGFEEREKLMVFYERAS 147
A + G T + +
Sbjct: 61 AETNPGVLELANRTEAPHAAEHGHKTIGDIMRSLNPLEGEFYREALQVSRYTREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTV 207
G +H + PGGV +L D + I L F +
Sbjct: 121 GRHVHPSTLYPGGVGTVATIQLFTDYLTRLMRYVEFCKRIVPLHDDLFDFFYEAMPGYEA 180
Query: 208 KLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMM--- 264
+ G G + ++ R + + + + D + +
Sbjct: 181 VGQRRVLLGCWGSLQDPDHCNFEYRDMTNWGRKCFVTPGVVVDGKLVTNDLIDINLGLRI 240
Query: 265 ----EMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRAD 303
E + V+R N V + +P +
Sbjct: 241 LLGSSYYEDWENEDTFVSRDPLGNPVDRRHPWNQHTIPRPQKR 283
>gi|296034407|gb|ADG85075.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 464
Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 8/61 (13%), Positives = 19/61 (31%), Gaps = 2/61 (3%)
Query: 305 KRSMESLIHHFKLYTEGYHVPV-GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYA 363
++++ L + VP EA +G +++ +K P
Sbjct: 387 EQALAELHAGRTKTWNDFKVPEEAIGCGFHEAVRGVLSHHVVIK-NHKIANYHPYPPTPW 445
Query: 364 H 364
+
Sbjct: 446 N 446
Score = 46.1 bits (108), Expect = 0.010, Method: Composition-based stats.
Identities = 19/226 (8%), Positives = 43/226 (19%), Gaps = 50/226 (22%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP- 128
+ N A G++ P + I L + H +
Sbjct: 1 GICGDNHATCATYAQNMAFGVKPPPIAEWIVNLGEAAEYMFDHNIFQDNLVGVDFCEQMV 60
Query: 129 -----------------------------------------PLWGFEEREKLMVFYERAS 147
L + +
Sbjct: 61 KETNPGVWEKATKTAAPHAELHGYKTIADIMTALNPFKGSFYLEALQMSRMTREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIP----PELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVN 203
G +H + PGGV + + + + + + DL
Sbjct: 121 GRHVHPSTLYPGGVGTVPTIQLFTDYIVRLMKYVEFMKKVVPFHDDLFDFFYEALPGYEE 180
Query: 204 IGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+G ++ G + K + + + +
Sbjct: 181 VGRRRILLGCW----GSFNNPDVCDYTYAKMTDWGRGMYVTPGVVV 222
>gi|296034375|gb|ADG85059.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 466
Score = 46.5 bits (109), Expect = 0.007, Method: Composition-based stats.
Identities = 21/197 (10%), Positives = 33/197 (16%), Gaps = 46/197 (23%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP- 128
+ N L G++ P G L + H +
Sbjct: 1 GICGDNHCTVSCLNQNMAYGVKPPKLGDYAFNLAETADYMFDHAIFNDCMCNVDFCEQMV 60
Query: 129 -----------------------------------------PLWGFEEREKLMVFYERAS 147
L Y
Sbjct: 61 KETNPSVLAKAENTSAPHSDIHGYKTIADIMRALNPFTGSFYLETLGVARYTREMYCLFG 120
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS----DLLTGNRIFKQRNVN 203
G H + PGG DI + + D + + DL
Sbjct: 121 GRHTHPSTIMPGGCSADITHQTMTDYYVRLMRYMDYIKRTVPMHDDLYDFFYEAMPGYER 180
Query: 204 IGTVKLEDAWGWGFSGV 220
+G + F
Sbjct: 181 VGYRDTDIICWGAFDDP 197
Score = 44.2 bits (103), Expect = 0.039, Method: Composition-based stats.
Identities = 12/95 (12%), Positives = 24/95 (25%), Gaps = 6/95 (6%)
Query: 270 VKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEV 329
+ + R + P+SA K +E K +
Sbjct: 358 IPPWSNAIERDRARTYHQPISALIGLYNLE-----KALVEVRAGRTKSWNSFTVPEEAVS 412
Query: 330 YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
EA +G +++ K + P +
Sbjct: 413 CGFHEAARGVISHHMVIR-NGKVANYQPYPPTPWN 446
>gi|30720163|gb|AAN87040.1| HupK [Thiocapsa roseopersicina]
Length = 389
Score = 46.1 bits (108), Expect = 0.010, Method: Composition-based stats.
Identities = 48/362 (13%), Positives = 90/362 (24%), Gaps = 42/362 (11%)
Query: 55 TKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLL 114
++ + L + Q A A A E+ G + R I HL
Sbjct: 37 GRSPHETAARLPLLFSICARAQAGACAGAFEQASGWVASPIIRGRREAAIAAETIREHLW 96
Query: 115 NVTTQAMDVGALTP----PLWGFEEREKLMVFYE---RASGSRMHAAYFRPGGVHQDIPP 167
+ + P +++ + G ++A P G+ +
Sbjct: 97 RILLDWPAILGEPPCRDDMAAVLALSNRILARLDPDGDLFGVGANSAADHPLGLDVLLTD 156
Query: 168 ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTV-------KLEDAWGWGFSGV 220
P ++ +G + ++ + E + G
Sbjct: 157 LTDLLTHRVLGVSPEHFLNLIGDPSGFERWCRKTETVAARLLRSLLESGEASLGQAPISA 216
Query: 221 MIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRL 280
+ R S R S P D+ + + RE+ R V+ L
Sbjct: 217 LPRLSDEDLIARMSAP-------DWAEFVAH--------PTWQGQPRETSPFTR--VHPL 259
Query: 281 LGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEF 340
GP A R + G V A +G
Sbjct: 260 PLIEAYGPGLLVRLSAQLTVVATGLRLLSRCCAGSASAQPTLASGNGVGLGRVFAARGLL 319
Query: 341 GVYLISDGGNKPYRCKIRAPGYAHLQ-------AMEFLCKG--HQL-ADVSAILGSLDIV 390
+ + +I AP + A+E L G Q+ ++ ++D
Sbjct: 320 AHLVRV-EDGRVRDYRILAPTEWNFHPRGVVARALEALPPGPEEQVRRQAELLITAIDPC 378
Query: 391 FG 392
Sbjct: 379 VA 380
>gi|170112284|ref|XP_001887344.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164637670|gb|EDR01953.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 147
Score = 46.1 bits (108), Expect = 0.011, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 150 RMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKL 209
R+H Y RP GV + P L++DI + + I +L+ G I K++ + IG V
Sbjct: 2 RLHTTYIRPRGVAFEPPHRLLDDIF---KQGTHSSSKIEELIMGKHILKEQTIGIGPVAA 58
Query: 210 EDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242
+ A + F G+M+RGS WDLRK P + Y E
Sbjct: 59 KHALDYSFGGIMLRGSRIVWDLRKVAPNDKYDE 91
>gi|296034383|gb|ADG85063.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 464
Score = 46.1 bits (108), Expect = 0.011, Method: Composition-based stats.
Identities = 21/197 (10%), Positives = 33/197 (16%), Gaps = 46/197 (23%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP- 128
+ N L G++ P G L + H +
Sbjct: 1 GICGDNHCTVSCLNQNMAYGVKPPKLGDYAFNLAETADYMFDHAIFNDYMCNVDFCEQMV 60
Query: 129 -----------------------------------------PLWGFEEREKLMVFYERAS 147
L Y
Sbjct: 61 KETNPSVLAKAENTSAPHSDIHGYKTIADIMRALNPFTGSFYLETLGVARYTREMYCLFG 120
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS----DLLTGNRIFKQRNVN 203
G H + PGG DI + + D + + DL
Sbjct: 121 GRHTHPSTIMPGGCSADITHQTMTDYYVRLMRYMDYIKRTVPMHDDLYDFFYEAMPGYER 180
Query: 204 IGTVKLEDAWGWGFSGV 220
+G + F
Sbjct: 181 VGYRDTDIICWGAFDDP 197
Score = 43.8 bits (102), Expect = 0.043, Method: Composition-based stats.
Identities = 12/95 (12%), Positives = 24/95 (25%), Gaps = 6/95 (6%)
Query: 270 VKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEV 329
+ + R + P+SA K +E K +
Sbjct: 358 IPPWSNAIERDRARTYHQPISALIGLYNLE-----KALVEVRAGRTKSWNSFTVPEEAVS 412
Query: 330 YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
EA +G +++ K + P +
Sbjct: 413 CGFHEAARGVISHHMVIR-NGKVANYQPYPPTPWN 446
>gi|213418350|ref|ZP_03351416.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Typhi str. E01-6750]
Length = 50
Score = 45.7 bits (107), Expect = 0.012, Method: Composition-based stats.
Identities = 7/33 (21%), Positives = 9/33 (27%), Gaps = 6/33 (18%)
Query: 368 MEFLCKGHQLAD------VSAILGSLDIVFGEV 394
E G +AD V + S D
Sbjct: 1 YEQSLVGTPIADPAKPLEVVRTIHSFDPCMACA 33
>gi|296034471|gb|ADG85107.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 462
Score = 45.7 bits (107), Expect = 0.012, Method: Composition-based stats.
Identities = 7/49 (14%), Positives = 13/49 (26%), Gaps = 1/49 (2%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
K + G EA +G +++ K P +
Sbjct: 397 KTWESFEVPDEGIGCGFTEAVRGVLSRHMVIKE-GKIANYHPYPPTPWN 444
Score = 44.6 bits (104), Expect = 0.026, Method: Composition-based stats.
Identities = 23/226 (10%), Positives = 43/226 (19%), Gaps = 50/226 (22%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP- 128
+ N A G+ P G+ I L + H +
Sbjct: 1 GICGDNHATCSCYAQNMAYGVHPPALGEQIVNLGEAAEYMFDHNIFQENLVGVDFCEKMV 60
Query: 129 -----------------------------------------PLWGFEEREKLMVFYERAS 147
+ +
Sbjct: 61 AETNPGVLEQANRSEAPHASDHGYSTIGDIMRSLNPFSGEFYREALQVSRYTREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS----DLLTGNRIFKQRNVN 203
G +H + PGGV +L D + + + DL
Sbjct: 121 GRHVHPSTLYPGGVGTTATIQLFTDYYTRLMRYVEFMKRVVPMHDDLFDFFYQAMPGYEQ 180
Query: 204 IGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
+G + G S +D R + + + +
Sbjct: 181 VGLRRTLLGCW----GAFQDPSVCNFDYRDMTEWGRAMGVTPGVVV 222
>gi|296034297|gb|ADG85020.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 464
Score = 45.3 bits (106), Expect = 0.016, Method: Composition-based stats.
Identities = 6/49 (12%), Positives = 12/49 (24%), Gaps = 1/49 (2%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
+T EA +G +++ K P +
Sbjct: 397 DTWTPFTVPDNAISCGFTEAVRGVLSHHMVIR-DGKIANYHPYPPTPWN 444
Score = 42.6 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 25/222 (11%), Positives = 43/222 (19%), Gaps = 42/222 (18%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNV------------- 116
+ N GI P G+ I L + H +
Sbjct: 1 GICGDNHATCSVYNQNMAYGIAPPHLGEWIINLGESAEYMFDHNIFQENLVGVDYCERMV 60
Query: 117 ---------------TTQAMDVGALTP--------------PLWGFEEREKLMVFYERAS 147
A G T +
Sbjct: 61 LETNPGVLAKAENTEAPHAGAHGYRTIADIMRALNPIEGEFYREALAVSRWTREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTV 207
G +H + PGGV +L D + + + L F +
Sbjct: 121 GRHVHPSTLYPGGVGTVATVQLFTDYLTRLSRYAEFMKRVVPLHDDLFDFFYEALPGYEH 180
Query: 208 KLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
E G G + + R + + + +
Sbjct: 181 VGERRILLGCWGSLNDPEYCNFQYRDMTDWGRKMFVTPGVIV 222
>gi|296034317|gb|ADG85030.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 462
Score = 45.3 bits (106), Expect = 0.016, Method: Composition-based stats.
Identities = 6/49 (12%), Positives = 12/49 (24%), Gaps = 1/49 (2%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
+T EA +G +++ K P +
Sbjct: 397 DTWTPFTVPDNAISCGFTEAVRGVLSHHMVIR-DGKIANYHPYPPTPWN 444
Score = 42.6 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 30/280 (10%), Positives = 56/280 (20%), Gaps = 49/280 (17%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNV------------- 116
+ N G++ P G+ I L + H +
Sbjct: 1 GICGDNHATCSVYNQNMAYGMKPPHLGEWIINLGESAEYMFDHNIFQENLVGVDYCERMV 60
Query: 117 ---------------TTQAMDVGALTP--------------PLWGFEEREKLMVFYERAS 147
A G T +
Sbjct: 61 RETNPGVLAKAENTEAPHAGAHGYRTIANIMRALNPIEGEFYREALAVSRWTREMFCLME 120
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTV 207
G +H + PGGV +L D + + + L F +
Sbjct: 121 GRHVHPSTLYPGGVGTVATVQLFTDYLTRLTRYAEFMKRVVPLHDDLFDFFYEALPGYEH 180
Query: 208 KLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMME-- 265
E G G + + R + + + + D + +
Sbjct: 181 VGERRILLGCWGALNDPEYCNFQYRDMTDWGRKMFVTPGVIVDGKLVTTDLVDINLGIRI 240
Query: 266 -----MRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
+ + Q V N V + +P
Sbjct: 241 LLGHSYYDDWQGQEQFVTHDPLGNPVDRHHPWNQHTIPRP 280
>gi|161614033|ref|YP_001587998.1| hypothetical protein SPAB_01772 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|161363397|gb|ABX67165.1| hypothetical protein SPAB_01772 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 295
Score = 45.3 bits (106), Expect = 0.018, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 21/73 (28%), Gaps = 8/73 (10%)
Query: 326 VGEV-YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAIL 384
GE A VE +G +I +P H Q +LA + L
Sbjct: 220 DGEWKIAVVETARGWLVHQARLTTSGNILDYRIISPTTRHAQ--PDGVIARELATIPLSL 277
Query: 385 GS-----LDIVFG 392
S +D
Sbjct: 278 WSQQLQVIDPCVA 290
>gi|62180119|ref|YP_216536.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|62127752|gb|AAX65455.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|322714590|gb|EFZ06161.1| Nickel-iron hydrogenase, large subunit [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
Length = 273
Score = 45.3 bits (106), Expect = 0.018, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 21/73 (28%), Gaps = 8/73 (10%)
Query: 326 VGEV-YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAIL 384
GE A VE +G +I +P H Q +LA + L
Sbjct: 198 DGEWKIAVVETARGWLVHQARLTTSGNILDYRIISPTTRHAQ--PDGVIARELATIPLSL 255
Query: 385 GS-----LDIVFG 392
S +D
Sbjct: 256 WSQQLQVIDPCVA 268
>gi|182678143|ref|YP_001832289.1| putative hydrogenase expression/formation protein HupK
[Beijerinckia indica subsp. indica ATCC 9039]
gi|182634026|gb|ACB94800.1| putative hydrogenase expression/formation protein HupK
[Beijerinckia indica subsp. indica ATCC 9039]
Length = 329
Score = 45.3 bits (106), Expect = 0.018, Method: Composition-based stats.
Identities = 12/84 (14%), Positives = 23/84 (27%), Gaps = 13/84 (15%)
Query: 319 TEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLA 378
T P+G A +G + +I +P + + M LA
Sbjct: 243 TPPMPRPMGGCIGLARAARGILVHQAEVV-RGRITAYRILSPTFWN--VMPGGLLASMLA 299
Query: 379 DVS----------AILGSLDIVFG 392
+ +L S++
Sbjct: 300 TLPTGPLQRPLARLVLTSINPCVP 323
>gi|260505889|gb|ACX42346.1| NiFe-hydrogenase large subunit [Streptomyces sp. MP2(2009)]
Length = 410
Score = 45.3 bits (106), Expect = 0.019, Method: Composition-based stats.
Identities = 9/84 (10%), Positives = 21/84 (25%), Gaps = 2/84 (2%)
Query: 274 RQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV-GEVYAA 332
Q + + ++++E + E + VP
Sbjct: 328 WQIPRWSNALERNRARTYFQAYTAAVALHFAEKALEEVRAGRTQTWEKFEVPEESIGVGF 387
Query: 333 VEAPKGEFGVYLISDGGNKPYRCK 356
EA +G +++ K
Sbjct: 388 TEAVRGVLSHHMVIR-DGKIANYH 410
>gi|168260297|ref|ZP_02682270.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|205350555|gb|EDZ37186.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
Length = 295
Score = 44.9 bits (105), Expect = 0.021, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 21/73 (28%), Gaps = 8/73 (10%)
Query: 326 VGEV-YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAIL 384
GE A VE +G +I +P H Q +LA + L
Sbjct: 220 DGEWKIAVVETARGWLVHQARLTTSGNILDYRIISPTTRHAQ--PDGVIARELATIPLSL 277
Query: 385 GS-----LDIVFG 392
S +D
Sbjct: 278 WSQQLQVIDPCVA 290
>gi|198245957|ref|YP_002215607.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|197940473|gb|ACH77806.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
Length = 295
Score = 44.9 bits (105), Expect = 0.021, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 21/73 (28%), Gaps = 8/73 (10%)
Query: 326 VGEV-YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAIL 384
GE A VE +G +I +P H Q +LA + L
Sbjct: 220 DGEWKIAVVETARGWLVHQARLTTSGNILDYRIISPTTRHAQ--PDGVIARELATIPLSL 277
Query: 385 GS-----LDIVFG 392
S +D
Sbjct: 278 WSQQLQVIDPCVA 290
>gi|16764877|ref|NP_460492.1| dehydrogenase protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|167992876|ref|ZP_02573971.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|197264095|ref|ZP_03164169.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|200389358|ref|ZP_03215969.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|205352767|ref|YP_002226568.1| ATP/GTP-binding protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|207856968|ref|YP_002243619.1| ATP/GTP-binding protein [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|224583963|ref|YP_002637761.1| dehydrogenase protein [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|16420053|gb|AAL20451.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|197242350|gb|EDY24970.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|199601803|gb|EDZ00349.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|205272548|emb|CAR37449.1| putative ATP/GTP-binding protein [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205328993|gb|EDZ15757.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|206708771|emb|CAR33099.1| putative ATP/GTP-binding protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|224468490|gb|ACN46320.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|261246730|emb|CBG24542.1| putative ATP/GTP-binding protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267993437|gb|ACY88322.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301158060|emb|CBW17556.1| putative ATP/GTP-binding protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312912516|dbj|BAJ36490.1| hypothetical protein STMDT12_C15470 [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|321224152|gb|EFX49215.1| Putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|323129800|gb|ADX17230.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. 4/74]
gi|326627836|gb|EGE34179.1| hypothetical protein SG9_1610 [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9]
gi|332988416|gb|AEF07399.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
Length = 295
Score = 44.9 bits (105), Expect = 0.021, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 21/73 (28%), Gaps = 8/73 (10%)
Query: 326 VGEV-YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAIL 384
GE A VE +G +I +P H Q +LA + L
Sbjct: 220 DGEWKIAVVETARGWLVHQARLTTSGNILDYRIISPTTRHAQ--PDGVIARELATIPLSL 277
Query: 385 GS-----LDIVFG 392
S +D
Sbjct: 278 WSQQLQVIDPCVA 290
>gi|326623352|gb|EGE29697.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Dublin str. 3246]
Length = 292
Score = 44.9 bits (105), Expect = 0.021, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 21/73 (28%), Gaps = 8/73 (10%)
Query: 326 VGEV-YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAIL 384
GE A VE +G +I +P H Q +LA + L
Sbjct: 217 DGEWKIAVVETARGWLVHQARLTTSGNILDYRIISPTTRHAQ--PDGVIARELATIPLSL 274
Query: 385 GS-----LDIVFG 392
S +D
Sbjct: 275 WSQQLQVIDPCVA 287
>gi|157100105|emb|CAL47086.1| hydrogen-uptake (NiFe) hydrogenase large subunit [uncultured
prokaryote]
Length = 241
Score = 44.9 bits (105), Expect = 0.022, Method: Composition-based stats.
Identities = 20/141 (14%), Positives = 40/141 (28%), Gaps = 1/141 (0%)
Query: 96 GQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAY 155
+ + L H T ++ AL+ L E + K+ G H
Sbjct: 45 AEHPQGLGPFANAYWGHSTYKFTPEQNLIALSHYLKALEMQRKVAQMMAIFGGKNPHPQS 104
Query: 156 FRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNV-NIGTVKLEDAWG 214
GGV + + + + N I++ + + + +V A
Sbjct: 105 LVVGGVTCIMDMLDPARMAEFMVKYKDMANFINNAYYADVVMAAEMYADEPSVMQPIAIK 164
Query: 215 WGFSGVMIRGSGAAWDLRKSQ 235
+G + + L K
Sbjct: 165 NFMAGDGLLVDRNDYLLCKGM 185
>gi|207110579|ref|ZP_03244741.1| NADH dehydrogenase subunit D [Helicobacter pylori HPKX_438_CA4C1]
Length = 38
Score = 44.9 bits (105), Expect = 0.023, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQ 376
E G ++ S+G P+R KIRAP + H+ A+ + GH
Sbjct: 1 ELGFFIHSEGEPYPHRLKIRAPSFYHIGALSDILVGHI 38
>gi|74356073|dbj|BAE44408.1| hydrogen-uptake [NiFe] hydrogenase large subunit [Thioreductor
micantisoli]
Length = 274
Score = 44.9 bits (105), Expect = 0.023, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 47/168 (27%), Gaps = 11/168 (6%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H + ++ AL+ L E + G H GGV + +
Sbjct: 73 HKTMRFSPEQNLIALSHYLKTLEIQRIAAQAMAIFGGKNPHPQSLTVGGVTCIMDLQDPS 132
Query: 172 DIGCWCDSFPSALN-----DISDLLT-----GNRIFKQRNVNIGTVKLEDAWGWGFSGVM 221
+G + F + +D++ N + N+G + G +
Sbjct: 133 RLGEYLTRFQQVADFVNRAYYADIVMAAEAYRNEPSVTQKTNLGNFIAHQEFQIGKKEWL 192
Query: 222 IRGSGAAWDLRKSQPYECYSELDFDIPIGKHG-DCYDRYLVRMMEMRE 268
+ SG D ++ Y + D R+ + E
Sbjct: 193 LNASGYIKDYDLTKFYPIDESKIEEDVTHSWYQDTGYRHPYNGETIPE 240
>gi|296034387|gb|ADG85065.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 464
Score = 44.6 bits (104), Expect = 0.028, Method: Composition-based stats.
Identities = 21/197 (10%), Positives = 33/197 (16%), Gaps = 46/197 (23%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP- 128
+ N L G++ P G L + H +
Sbjct: 1 GICGDNHCAESCLNQNMAYGVKPPNLGDYAFNLAETADYMFDHAIFNDCMCNVDFCEQMV 60
Query: 129 -----------------------------------------PLWGFEEREKLMVFYERAS 147
L Y
Sbjct: 61 KETNPSVLAKAENTSAPHSDIHGYKTIADIMRALNPFTGSFYLETLGAARYTREMYCLFG 120
Query: 148 GSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDIS----DLLTGNRIFKQRNVN 203
G H + PGG DI + + D + + DL
Sbjct: 121 GRHTHPSTIMPGGCSADITHQTMTDYYVRLMRYMDYIKRTVPMHDDLYDFFYEAMPGYER 180
Query: 204 IGTVKLEDAWGWGFSGV 220
+G + F
Sbjct: 181 VGYRDTDIICWGAFDDP 197
Score = 43.8 bits (102), Expect = 0.046, Method: Composition-based stats.
Identities = 12/95 (12%), Positives = 24/95 (25%), Gaps = 6/95 (6%)
Query: 270 VKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEV 329
+ + R + P+SA K +E K +
Sbjct: 358 IPPWSNAIERDRARTYHQPISALIGLYNLE-----KALVEVRAGRTKSWNSFTVPEEAVS 412
Query: 330 YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
EA +G +++ K + P +
Sbjct: 413 CGFHEAARGVISHHMVIR-NGKVANYQPYPPTPWN 446
>gi|161503393|ref|YP_001570505.1| hypothetical protein SARI_01467 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160864740|gb|ABX21363.1| hypothetical protein SARI_01467 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 292
Score = 44.6 bits (104), Expect = 0.028, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 8/73 (10%)
Query: 326 VGEV-YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAIL 384
GE A VE +G +I +P H Q+ +LA + A L
Sbjct: 217 DGEWKIAVVETARGWLVHQARLATSGNILDYRIISPTTRHAQS--DGVIACELAAIPASL 274
Query: 385 GS-----LDIVFG 392
S +D
Sbjct: 275 WSRQLQVIDPCVA 287
>gi|296034295|gb|ADG85019.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 464
Score = 44.6 bits (104), Expect = 0.030, Method: Composition-based stats.
Identities = 8/78 (10%), Positives = 20/78 (25%), Gaps = 2/78 (2%)
Query: 291 ASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVP-VGEVYAAVEAPKGEFGVYLISDGG 349
+++++ + E + VP EA +G +++
Sbjct: 371 YFQAYSAAVALHFVEKALAEVRAGRTKTWEPFRVPDEANSCGFTEAVRGVLSHHMVVRDR 430
Query: 350 NKPYRCKIRAPGYAHLQA 367
K P +
Sbjct: 431 -KIANYHPYPPTPWNASP 447
Score = 39.2 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 7/62 (11%), Positives = 12/62 (19%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
+ N A + P G+ I L + H +
Sbjct: 1 GICGDNHATCSVYAQNMAYQVRPPHLGEWILNLGEAAEYMFDHNIFQENLVGVDFCEKMV 60
Query: 130 LW 131
Sbjct: 61 RE 62
>gi|306481231|emb|CBN34653.1| hydrogen-uptake (NiFe) hydrogenase large subunit [uncultured
prokaryote]
Length = 242
Score = 44.2 bits (103), Expect = 0.032, Method: Composition-based stats.
Identities = 20/141 (14%), Positives = 40/141 (28%), Gaps = 1/141 (0%)
Query: 96 GQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAY 155
+ + L H T ++ AL+ L E + K+ G H
Sbjct: 34 AEHPQGLGPFANAYWGHSTYKFTPEQNLIALSHYLKALEMQRKVAQMMAIFGGKNPHPQS 93
Query: 156 FRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNV-NIGTVKLEDAWG 214
GGV + + + + N I++ + + + +V A
Sbjct: 94 LVVGGVTCIMDMLDPARMAEFMVKYKDMANFINNAYYADVVMAAEMYADEPSVMQPIAIK 153
Query: 215 WGFSGVMIRGSGAAWDLRKSQ 235
+G + + L K
Sbjct: 154 NFMAGDGLLVDRNDYLLSKGM 174
>gi|296034399|gb|ADG85071.1| [NiFe]-hydrogenase large subunit [uncultured bacterium]
Length = 465
Score = 44.2 bits (103), Expect = 0.038, Method: Composition-based stats.
Identities = 12/95 (12%), Positives = 24/95 (25%), Gaps = 6/95 (6%)
Query: 270 VKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEV 329
+ + R + P+SA K +E K +
Sbjct: 359 IPPWSNAIERDRARTYHQPISALIGLYNLE-----KALVEVRAGRTKSWNSFTVPEEAVS 413
Query: 330 YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
EA +G +++ K + P +
Sbjct: 414 CGFHEAARGVISHHMVIR-NGKVANYQPYPPTPWN 447
Score = 38.8 bits (89), Expect = 1.8, Method: Composition-based stats.
Identities = 24/211 (11%), Positives = 45/211 (21%), Gaps = 33/211 (15%)
Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG----- 124
+ N L G++ P G L + H +
Sbjct: 1 GICGDNHATCSCLNQNMAYGVKPPKLGDYAFNLAETADYMFDHAIFNDCIVQVDFCEQMV 60
Query: 125 ---------------ALTPPLWGFEEREKLMV---------FYERASGSRMHAAYFRPGG 160
A + G++ +M + E +R + G
Sbjct: 61 KETNPSVLAKAENTSAPHSDIHGYKTIADIMRALNPFTGSFYLETLGVARYTREMYCLFG 120
Query: 161 VHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQ---RNVNIGTVKLEDAWGWGF 217
P L + + L+ K+ + ++ E G+
Sbjct: 121 GRHTHPSTLYHAGIGCSADIQTMTDYYVRLMRYMDYIKRTVPMHDDLYDFFYEAMPGYER 180
Query: 218 SGVMIRGSGAAWDLRKSQPYECYSELDFDIP 248
G + R W Y Y
Sbjct: 181 VG-LPRTDIICWGAFDDPEYVTYEYKSMTEW 210
>gi|213581691|ref|ZP_03363517.1| hydrogenase 1 large subunit [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
Length = 231
Score = 43.8 bits (102), Expect = 0.050, Method: Composition-based stats.
Identities = 6/41 (14%), Positives = 11/41 (26%), Gaps = 1/41 (2%)
Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCK 356
+ + EAP+G G + K +
Sbjct: 192 EKWEPASWPQHCRGIGFTEAPRGALGHWASIR-DQKIELYQ 231
>gi|37039855|gb|AAQ88201.1| NADH dehydrogenase subunit 7 [Andreaea rothii]
gi|37694193|gb|AAQ99017.1| NADH dehydrogenase subunit 7 [Andreaea wilsonii]
gi|37694195|gb|AAQ99018.1| NADH dehydrogenase subunit 7 [Aulacomnium turgidum]
gi|37694197|gb|AAQ99019.1| NADH dehydrogenase subunit 7 [Bartramia stricta]
gi|37694199|gb|AAQ99020.1| NADH dehydrogenase subunit 7 [Brachythecium salebrosum]
gi|37694201|gb|AAQ99021.1| NADH dehydrogenase subunit 7 [Dendroligotrichum dendroides]
gi|37694203|gb|AAQ99022.1| NADH dehydrogenase subunit 7 [Diphyscium foliosum]
gi|37694206|gb|AAQ99023.1| NADH dehydrogenase subunit 7 [Entosthodon laevis]
gi|37694210|gb|AAQ99025.1| NADH dehydrogenase subunit 7 [Funaria hygrometrica]
gi|37694212|gb|AAQ99026.1| NADH dehydrogenase subunit 7 [Hedwigia ciliata]
gi|37694218|gb|AAQ99029.1| NADH dehydrogenase subunit 7 [Orthodontium lineare]
gi|37694220|gb|AAQ99030.1| NADH dehydrogenase subunit 7 [Orthotrichum lyellii]
gi|37694222|gb|AAQ99031.1| NADH dehydrogenase subunit 7 [Polytrichadelphus purpureus]
gi|37694224|gb|AAQ99032.1| NADH dehydrogenase subunit 7 [Polytrichastrum pallidisetum]
gi|37694226|gb|AAQ99033.1| NADH dehydrogenase subunit 7 [Hymenodontopsis vallis-gratiae]
gi|37694228|gb|AAQ99034.1| NADH dehydrogenase subunit 7 [Scouleria aquatica]
gi|37694230|gb|AAQ99035.1| NADH dehydrogenase subunit 7 [Sphagnum palustre]
gi|37694232|gb|AAQ99036.1| NADH dehydrogenase subunit 7 [Tetraplodon mnioides]
gi|37694234|gb|AAQ99037.1| NADH dehydrogenase subunit 7 [Timmia megapolitana]
gi|37960346|gb|AAP70563.1| NADH dehydrogenase subunit 7 [Sphagnum affine]
gi|37960352|gb|AAP70566.1| NADH dehydrogenase subunit 7 [Sphagnum compactum]
gi|37960354|gb|AAP70567.1| NADH dehydrogenase subunit 7 [Flatbergium sericeum]
gi|37960356|gb|AAP70568.1| NADH dehydrogenase subunit 7 [Sphagnum cuspidatum]
gi|37960358|gb|AAP70569.1| NADH dehydrogenase subunit 7 [Sphagnum cyclophyllum]
gi|37960360|gb|AAP70570.1| NADH dehydrogenase subunit 7 [Sphagnum cymbifolioides]
gi|37960362|gb|AAP70571.1| NADH dehydrogenase subunit 7 [Sphagnum fuscum]
gi|37960364|gb|AAP70572.1| NADH dehydrogenase subunit 7 [Sphagnum lapazense]
gi|37960366|gb|AAP70573.1| NADH dehydrogenase subunit 7 [Sphagnum lescurii]
gi|37960370|gb|AAP70575.1| NADH dehydrogenase subunit 7 [Sphagnum portoricense]
gi|37960372|gb|AAP70576.1| NADH dehydrogenase subunit 7 [Sphagnum pulchrum]
gi|37960376|gb|AAP70578.1| NADH dehydrogenase subunit 7 [Sphagnum recurvum]
gi|37960378|gb|AAP70579.1| NADH dehydrogenase subunit 7 [Flatbergium sericeum]
gi|37960380|gb|AAP70580.1| NADH dehydrogenase subunit 7 [Sphagnum squarrosum]
gi|37960382|gb|AAP70581.1| NADH dehydrogenase subunit 7 [Sphagnum steerei]
gi|37960384|gb|AAP70582.1| NADH dehydrogenase subunit 7 [Sphagnum strictum]
gi|37960386|gb|AAP70583.1| NADH dehydrogenase subunit 7 [Sphagnum subnitens]
gi|37960388|gb|AAP70584.1| NADH dehydrogenase subunit 7 [Sphagnum tenerum]
gi|37960390|gb|AAP70585.1| NADH dehydrogenase subunit 7 [Sphagnum teres]
gi|297179921|gb|ADI23940.1| NADH dehydrogenase subunit 7 [Ambuchanania leucobryoides]
gi|297179923|gb|ADI23941.1| NADH dehydrogenase subunit 7 [Leucobryum sp. Vanderpoorten s.n.]
gi|297179925|gb|ADI23942.1| NADH dehydrogenase subunit 7 [Sphagnum palenae]
gi|297522423|gb|ADI44663.1| NADH dehydrogenase subunit 7 [Micromitrium tenerum]
gi|297522425|gb|ADI44664.1| NADH dehydrogenase subunit 7 [Ephemerum serratum]
gi|297522427|gb|ADI44665.1| NADH dehydrogenase subunit 7 [Micromitrium megalosporum]
Length = 22
Score = 43.8 bits (102), Expect = 0.051, Method: Composition-based stats.
Identities = 19/22 (86%), Positives = 21/22 (95%)
Query: 47 RGTEKLIETKTFLQAVPYFDRL 68
RGTEKLIE KT+LQA+PYFDRL
Sbjct: 1 RGTEKLIEYKTYLQALPYFDRL 22
>gi|238911762|ref|ZP_04655599.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
Length = 295
Score = 43.8 bits (102), Expect = 0.055, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 8/73 (10%)
Query: 326 VGEV-YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAIL 384
GE A VE +G +I +P H Q+ +LA + L
Sbjct: 220 DGEWKIAVVETARGWLVHQARLTTSGNILDYRIISPTTRHAQS--DGVIARELATIPLSL 277
Query: 385 GS-----LDIVFG 392
S +D
Sbjct: 278 WSQQLQVIDPCVA 290
>gi|168819296|ref|ZP_02831296.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|205343720|gb|EDZ30484.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|320085983|emb|CBY95757.1| Coenzyme F420 hydrogenase subunit alpha
8-hydroxy-5-deazaflavin-reducing hydrogenase subunit
alpha; FRH [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
Length = 295
Score = 43.4 bits (101), Expect = 0.055, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 8/73 (10%)
Query: 326 VGEV-YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAIL 384
GE A VE +G +I +P H Q+ +LA + L
Sbjct: 220 DGEWKIAVVETARGWLVHQARLTTSGNILDYRIISPTTRHAQS--DGVIARELATIPLSL 277
Query: 385 GS-----LDIVFG 392
S +D
Sbjct: 278 WSQQLQVIDPCVA 290
>gi|168241061|ref|ZP_02665993.1| putative ATP/GTP-binding protein [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|194451944|ref|YP_002045570.1| putative ATP/GTP-binding protein [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194410248|gb|ACF70467.1| putative ATP/GTP-binding protein [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|205339566|gb|EDZ26330.1| putative ATP/GTP-binding protein [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
Length = 295
Score = 43.4 bits (101), Expect = 0.055, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 8/73 (10%)
Query: 326 VGEV-YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAIL 384
GE A VE +G +I +P H Q+ +LA + L
Sbjct: 220 DGEWKIAVVETARGWLVHQARLTTSGNILDYRIISPTTRHAQS--DGVIARELATIPLSL 277
Query: 385 GS-----LDIVFG 392
S +D
Sbjct: 278 WSQQLQVIDPCVA 290
>gi|204927921|ref|ZP_03219122.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|204323263|gb|EDZ08459.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
Length = 295
Score = 43.4 bits (101), Expect = 0.055, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 8/73 (10%)
Query: 326 VGEV-YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAIL 384
GE A VE +G +I +P H Q+ +LA + L
Sbjct: 220 DGEWKIAVVETARGWLVHQARLTTSGNILDYRIISPTTRHAQS--DGVIARELATIPLSL 277
Query: 385 GS-----LDIVFG 392
S +D
Sbjct: 278 WSQQLQVIDPCVA 290
>gi|197247943|ref|YP_002146511.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197211646|gb|ACH49043.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
Length = 295
Score = 43.4 bits (101), Expect = 0.055, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 8/73 (10%)
Query: 326 VGEV-YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAIL 384
GE A VE +G +I +P H Q+ +LA + L
Sbjct: 220 DGEWKIAVVETARGWLVHQARLTTSGNILDYRIISPTTRHAQS--DGVIARELATIPLSL 277
Query: 385 GS-----LDIVFG 392
S +D
Sbjct: 278 WSQQLQVIDPCVA 290
>gi|56413506|ref|YP_150581.1| ATP/GTP-binding protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197362431|ref|YP_002142068.1| ATP/GTP-binding protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|56127763|gb|AAV77269.1| putative ATP/GTP-binding protein [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197093908|emb|CAR59398.1| putative ATP/GTP-binding protein [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
Length = 295
Score = 43.4 bits (101), Expect = 0.055, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 8/73 (10%)
Query: 326 VGEV-YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAIL 384
GE A VE +G +I +P H Q+ +LA + L
Sbjct: 220 DGEWKIAVVETARGWLVHQARLTTSGNILDYRIISPTTRHAQS--DGVIARELATIPLSL 277
Query: 385 GS-----LDIVFG 392
S +D
Sbjct: 278 WSQQLQVIDPCVA 290
>gi|167550015|ref|ZP_02343773.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|168463043|ref|ZP_02696974.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|194445920|ref|YP_002040781.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194404583|gb|ACF64805.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|195633963|gb|EDX52315.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|205325139|gb|EDZ12978.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
Length = 295
Score = 43.4 bits (101), Expect = 0.056, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 8/73 (10%)
Query: 326 VGEV-YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAIL 384
GE A VE +G +I +P H Q+ +LA + L
Sbjct: 220 DGEWKIAVVETARGWLVHQARLTTSGNILDYRIISPTTRHAQS--DGVIARELATIPLSL 277
Query: 385 GS-----LDIVFG 392
S +D
Sbjct: 278 WSQQLQVIDPCVA 290
>gi|37694191|gb|AAQ99016.1| NADH dehydrogenase subunit 7 [Alophosia azorica]
gi|37694214|gb|AAQ99027.1| NADH dehydrogenase subunit 7 [Hookeria lucens]
gi|37694216|gb|AAQ99028.1| NADH dehydrogenase subunit 7 [Oedipodium griffithianum]
Length = 22
Score = 43.4 bits (101), Expect = 0.061, Method: Composition-based stats.
Identities = 18/22 (81%), Positives = 20/22 (90%)
Query: 47 RGTEKLIETKTFLQAVPYFDRL 68
RGTEKLIE KT+LQA+PY DRL
Sbjct: 1 RGTEKLIEYKTYLQALPYSDRL 22
>gi|168229920|ref|ZP_02654978.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|194468666|ref|ZP_03074650.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194455030|gb|EDX43869.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|205335408|gb|EDZ22172.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
Length = 295
Score = 43.4 bits (101), Expect = 0.065, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 8/73 (10%)
Query: 326 VGEV-YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAIL 384
GE A VE +G +I +P H Q+ +LA + L
Sbjct: 220 DGEWKIAVVETARGWLVHQARLTTSGNILDYRIISPTTRHAQS--DGVIARELATIPLSL 277
Query: 385 GS-----LDIVFG 392
S +D
Sbjct: 278 WSQQLQVIDPCVA 290
>gi|47177017|ref|YP_015628.1| uptake hydrogenase [Oligotropha carboxidovorans OM5]
gi|47115408|emb|CAG28461.1| uptake hydrogenase [Oligotropha carboxidovorans OM5]
Length = 307
Score = 43.0 bits (100), Expect = 0.072, Method: Composition-based stats.
Identities = 18/189 (9%), Positives = 41/189 (21%), Gaps = 11/189 (5%)
Query: 174 GCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRK 233
+ L + + + + R + D
Sbjct: 77 YETLREHALVMLRDWPLALHDVPCNDDLSGLAGLCDSHLRDLEHTLFSTRATDVLDDFDG 136
Query: 234 SQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASD 293
+ + K R I ++R++ + +
Sbjct: 137 WLKNSQSRPAKYLKQVEKWPKSSGRTAAEFDPTFIGRVIQHPALSRIVDNEGITLFARMA 196
Query: 294 PKIVPPKRADM-KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKP 352
++V + S ++ I + + T G EA +G Y
Sbjct: 197 ARVVEAATLIIDITSGDAGIRYGRTDTSG---------GWAEAARGRLLHYARLR-NGAI 246
Query: 353 YRCKIRAPG 361
+I P
Sbjct: 247 EDYRIETPT 255
>gi|186474330|ref|YP_001863301.1| HupK protein [Burkholderia phymatum STM815]
gi|184198289|gb|ACC76251.1| HupK protein [Burkholderia phymatum STM815]
Length = 336
Score = 43.0 bits (100), Expect = 0.080, Method: Composition-based stats.
Identities = 9/64 (14%), Positives = 17/64 (26%), Gaps = 12/64 (18%)
Query: 336 PKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---AMEFLCKG------HQLADVSAILGS 386
+G K +I P + + + +G LA ++
Sbjct: 265 ARGVLVHLARL-EEGKVAAYRIVPPTWWNFGRANLLAAALRGLPWEAAQPLA--QRLVLL 321
Query: 387 LDIV 390
LD
Sbjct: 322 LDPC 325
>gi|157100606|emb|CAL47120.1| hydrogen-uptake (NiFe) hydrogenase large subunit [uncultured
prokaryote]
Length = 241
Score = 43.0 bits (100), Expect = 0.083, Method: Composition-based stats.
Identities = 15/112 (13%), Positives = 30/112 (26%)
Query: 91 EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSR 150
+ + + L H T ++ AL+ L E + + G
Sbjct: 40 TVAKFAKHPQGLGPFANAYWGHSTYRLTPEQNLIALSHYLKALEMQRLVAQMMAIFGGKN 99
Query: 151 MHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNV 202
H GGV + + + F N I++ + +
Sbjct: 100 PHPQSLVVGGVTCVMDMLDPARMAEYMVKFKDMANFINNAYYPDVVMAAEMY 151
>gi|168235621|ref|ZP_02660679.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|194737097|ref|YP_002114549.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|194712599|gb|ACF91820.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197290990|gb|EDY30343.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|322616151|gb|EFY13067.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322620908|gb|EFY17767.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322623001|gb|EFY19843.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322628291|gb|EFY25079.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322634696|gb|EFY31427.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322638737|gb|EFY35432.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322641098|gb|EFY37742.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322646538|gb|EFY43046.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322649097|gb|EFY45538.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322654526|gb|EFY50848.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322660755|gb|EFY56988.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322665143|gb|EFY61331.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322667887|gb|EFY64047.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322671701|gb|EFY67822.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322677252|gb|EFY73316.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322680084|gb|EFY76123.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322685486|gb|EFY81482.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|323193696|gb|EFZ78900.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323200003|gb|EFZ85091.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323204734|gb|EFZ89731.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323205700|gb|EFZ90663.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|323214125|gb|EFZ98886.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323216795|gb|EGA01519.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323220577|gb|EGA05027.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323225687|gb|EGA09912.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323231889|gb|EGA15996.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323234416|gb|EGA18503.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323237867|gb|EGA21926.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323243532|gb|EGA27551.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323249529|gb|EGA33443.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323254226|gb|EGA38044.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323258723|gb|EGA42383.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323261708|gb|EGA45281.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323266651|gb|EGA50138.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323271615|gb|EGA55035.1| putative dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
Length = 295
Score = 43.0 bits (100), Expect = 0.087, Method: Composition-based stats.
Identities = 13/68 (19%), Positives = 20/68 (29%), Gaps = 7/68 (10%)
Query: 330 YAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGS--- 386
A VE +G +I +P H Q+ +LA + L S
Sbjct: 225 IAVVETARGWLVHQARLTTSGNILDYRIISPTTRHAQS--DGVIARELATIPLSLWSQQL 282
Query: 387 --LDIVFG 392
+D
Sbjct: 283 QVIDPCVA 290
>gi|306481227|emb|CBN34651.1| hydrogen-uptake (NiFe) hydrogenase large subunit [uncultured
prokaryote]
Length = 199
Score = 42.6 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 15/112 (13%), Positives = 31/112 (27%)
Query: 91 EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSR 150
+ + + L H T ++ AL+ L E + + G +
Sbjct: 17 TVAKFAKHPQGLGPFANAYWGHSTYRLTPEQNLIALSHYLKALEMQRLVAQMMAIFGGKQ 76
Query: 151 MHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNV 202
H GGV + + + F N I++ + +
Sbjct: 77 PHPQSLVVGGVTCVMDMLDPARMAEYMVKFKDMANFINNAYYPDVVMAAEMY 128
>gi|63021623|gb|AAY26494.1| NADH dehydrogenase subunit 7 [Plagiomnium ellipticum]
gi|63021625|gb|AAY26495.1| NADH dehydrogenase subunit 7 [Plagiomnium insigne]
gi|63021627|gb|AAY26496.1| NADH dehydrogenase subunit 7 [Plagiomnium medium]
Length = 23
Score = 42.2 bits (98), Expect = 0.13, Method: Composition-based stats.
Identities = 14/20 (70%), Positives = 18/20 (90%)
Query: 3 KKKSRSFTINFGPQHPAAHG 22
K+ ++FT+NFGPQHPAAHG
Sbjct: 4 TKQIKNFTLNFGPQHPAAHG 23
>gi|157100079|emb|CAL47119.1| hydrogen-uptake (NiFe) hydrogenase large subunit [uncultured
prokaryote]
Length = 241
Score = 42.2 bits (98), Expect = 0.15, Method: Composition-based stats.
Identities = 19/175 (10%), Positives = 40/175 (22%), Gaps = 12/175 (6%)
Query: 76 QEHAY-ALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFE 134
+H Y + E L H + ++ + L
Sbjct: 23 HKHPYNCSQGDLAAVQEKLANFVNAGRLGLFANGYWGHAQYKLSPEENLIHMNHYLEALR 82
Query: 135 EREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGN 194
+ ++ G H GGV + + + + + +
Sbjct: 83 IQREVSKAIAIFGGKTPHPQNLVVGGVTSVMDMLNPQRLNDYLFIIKDTQEFLKRAYLPD 142
Query: 195 ------RIFKQRNVNIGTVKLEDAWGWGF---SGVMIRGSGAAW--DLRKSQPYE 238
G G+ + SG W D K++P++
Sbjct: 143 MKMVVAAYGDNIKAGEGRGHGNFMCSGGYQLSDDEPLFASGIIWGHDFSKTEPFD 197
>gi|1498183|dbj|BAA13231.1| hupK [Pseudomonas hydrogenovora]
Length = 212
Score = 41.9 bits (97), Expect = 0.17, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 44/148 (29%), Gaps = 5/148 (3%)
Query: 50 EKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRI 109
E+++ K A+ +L + LAV LG+ G+ L E R
Sbjct: 28 ERILSGKPAGFALRLLPQLYALCGEAHRLCATLAVNAALGLSDSASGEHAERLADETARE 87
Query: 110 LSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQ-----D 164
+ + + GF E + +G+R AA +
Sbjct: 88 HIRRIWLDWPIRLSSSSAVMAAGFGLSELARCALLKPAGTRDEAAGHWVEECMLGTTVGN 147
Query: 165 IPPELVEDIGCWCDSFPSALNDISDLLT 192
+D G W D++ + L
Sbjct: 148 WLAGWQDDPGGWLDAWSRRSDVWPARLL 175
>gi|119900087|ref|YP_935300.1| putative hydrogenase expression/formation protein HupK [Azoarcus
sp. BH72]
gi|119672500|emb|CAL96414.1| putative hydrogenase expression/formation protein HupK [Azoarcus
sp. BH72]
Length = 368
Score = 41.9 bits (97), Expect = 0.21, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 24/79 (30%), Gaps = 11/79 (13%)
Query: 324 VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---QAMEFLCKGHQLAD- 379
G A V+ +G + + +I AP H A KG AD
Sbjct: 280 PAPGLGLACVDTARGTLLHGVRV-EAGRIADYRICAPTDWHFHPGGAFVGEVKGRHAADE 338
Query: 380 ------VSAILGSLDIVFG 392
+ A+ SLD
Sbjct: 339 AGTRLRLHALALSLDPCVA 357
>gi|167042389|gb|ABZ07116.1| hypothetical protein ALOHA_HF4000ANIW97P9ctg3g1 [uncultured
marine crenarchaeote HF4000_ANIW97P9]
Length = 46
Score = 41.5 bits (96), Expect = 0.21, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLI 27
++ + T+N GPQHP + G +R+I
Sbjct: 18 LETVDDKIMTLNVGPQHPGS-GHMRII 43
>gi|269104830|ref|ZP_06157526.1| hypothetical protein VDA_000987 [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268161470|gb|EEZ39967.1| hypothetical protein VDA_000987 [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 313
Score = 41.1 bits (95), Expect = 0.35, Method: Composition-based stats.
Identities = 14/73 (19%), Positives = 20/73 (27%), Gaps = 1/73 (1%)
Query: 290 SASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYA-AVEAPKGEFGVYLISDG 348
D + + + L H + P E V AP GE +
Sbjct: 187 KMQDNVLFLLILSRVYELALLLSDHRLSGQWQFIKPTVEAGGVRVNAPHGELYHQAVVGW 246
Query: 349 GNKPYRCKIRAPG 361
NK +I P
Sbjct: 247 DNKIVEYQIITPT 259
>gi|157100115|emb|CAL47091.1| hydrogen-uptake (NiFe) hydrogenase large subunit [uncultured
prokaryote]
Length = 246
Score = 40.7 bits (94), Expect = 0.36, Method: Composition-based stats.
Identities = 17/146 (11%), Positives = 39/146 (26%), Gaps = 1/146 (0%)
Query: 91 EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSR 150
+ + L H T ++ L+ L + + K+ G
Sbjct: 38 TVKKFASHPQGLGPFANAYWGHGTYKLTPEQNLIGLSHYLIALKMQRKVAQMMAIFGGKN 97
Query: 151 MHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRN-VNIGTVKL 209
H GGV + + + + + I++ + + + +V
Sbjct: 98 PHPQSLVVGGVTCIMDMLDPARMAEFMVKYKDMKDFINNAYYADVVMVAEMYRDEPSVMK 157
Query: 210 EDAWGWGFSGVMIRGSGAAWDLRKSQ 235
E +G + + L K
Sbjct: 158 EVTIKNFMAGDGLLVGRKDYLLSKGM 183
>gi|255581874|ref|XP_002531737.1| conserved hypothetical protein [Ricinus communis]
gi|223528640|gb|EEF30657.1| conserved hypothetical protein [Ricinus communis]
Length = 221
Score = 40.7 bits (94), Expect = 0.38, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 350 NKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAIL 384
N PYR KIRAPG AH Q ++ + + H A+V I+
Sbjct: 155 NLPYRRKIRAPGSAHSQGLDSMSRHHMPANVVTII 189
>gi|296108752|ref|YP_003615701.1| Coenzyme F420-reducing hydrogenase alpha subunit-like protein
[Methanocaldococcus infernus ME]
gi|295433566|gb|ADG12737.1| Coenzyme F420-reducing hydrogenase alpha subunit-like protein
[Methanocaldococcus infernus ME]
Length = 393
Score = 40.7 bits (94), Expect = 0.39, Method: Composition-based stats.
Identities = 11/70 (15%), Positives = 29/70 (41%)
Query: 56 KTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLN 115
+ + R+ ++ ++ + LA+E+ I++P ++IR + RI S+ +
Sbjct: 1 MNIPEVPQIYSRICHLNEVSYPLSIVLAIERAYSIKVPKEAEIIREIGLLGERIYSNAVK 60
Query: 116 VTTQAMDVGA 125
+
Sbjct: 61 LEPFTNTKDF 70
>gi|37039857|gb|AAQ88202.1| NADH dehydrogenase subunit 7 [Takakia lepidozioides]
Length = 22
Score = 40.7 bits (94), Expect = 0.42, Method: Composition-based stats.
Identities = 17/22 (77%), Positives = 20/22 (90%)
Query: 47 RGTEKLIETKTFLQAVPYFDRL 68
RGTEKLIE KT+LQA+P+ DRL
Sbjct: 1 RGTEKLIEYKTYLQALPHSDRL 22
>gi|170107709|ref|XP_001885064.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164639905|gb|EDR04173.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 186
Score = 40.3 bits (93), Expect = 0.49, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 37/104 (35%), Gaps = 2/104 (1%)
Query: 152 HAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL--LTGNRIFKQRNVNIGTVKL 209
HA + R P + I + L + IG V
Sbjct: 67 HAQWIRVPFGEITCIPNHLMAILTHVMDVSGLTPFFKECKKLMEVYQHVSGTMGIGPVAA 126
Query: 210 EDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHG 253
+ + FSGVM+RGS AWDLR PY+ Y E I + G
Sbjct: 127 KQVLEYSFSGVMLRGSLIAWDLRNVAPYDKYDEKSQSIVVLPPG 170
>gi|37960348|gb|AAP70564.1| NADH dehydrogenase subunit 7 [Sphagnum angustifolium]
Length = 22
Score = 40.3 bits (93), Expect = 0.50, Method: Composition-based stats.
Identities = 18/21 (85%), Positives = 20/21 (95%)
Query: 48 GTEKLIETKTFLQAVPYFDRL 68
GTEKLIE KT+LQA+PYFDRL
Sbjct: 2 GTEKLIEYKTYLQALPYFDRL 22
>gi|207111583|ref|ZP_03245745.1| NADH dehydrogenase subunit D [Helicobacter pylori HPKX_438_CA4C1]
Length = 44
Score = 40.3 bits (93), Expect = 0.55, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 292 SDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVE 334
+P + + D+ +L+ HF L +G PVGEVYA E
Sbjct: 1 QNPHYISAPKEDIMTQNYALMQHFVLVAQGMRPPVGEVYAPTE 43
>gi|157100057|emb|CAL47108.1| hydrogen-uptake (NiFe) hydrogenase large subunit [uncultured
prokaryote]
Length = 241
Score = 40.3 bits (93), Expect = 0.58, Method: Composition-based stats.
Identities = 27/191 (14%), Positives = 45/191 (23%), Gaps = 17/191 (8%)
Query: 95 RGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAA 154
R L H ++ A+ L E +++++ + G H
Sbjct: 42 RFVDSGQLGIFANGYWGHPAYKLPPEANLMAVAHYLEALEWQKEIVKIHAIFGGKNPHPN 101
Query: 155 YFRPGGVHQDIPPELVEDIGCWCDSFPSALN---------DISDLLTGNRIFKQRNVNIG 205
Y G E+ L+ I DLL +K G
Sbjct: 102 YLVGGVPISVNLDEVNALNAEKLAYVKRLLDNAKTFIEQVYIPDLLAVASFYKDWGAIGG 161
Query: 206 TVKLEDAWGWGFSGVMIRGSGAAW--------DLRKSQPYECYSELDFDIPIGKHGDCYD 257
++ +G + S + DL K + I YD
Sbjct: 162 GLENYLVYGDLPTNGYGDVSSYKFPRGIIMGRDLSKVHEVDTKDPDQIKEYIAHSYYDYD 221
Query: 258 RYLVRMMEMRE 268
E
Sbjct: 222 TGDNSAKHPWE 232
>gi|157100099|emb|CAL47083.1| hydrogen-uptake (NiFe) hydrogenase large subunit [uncultured
prokaryote]
Length = 241
Score = 39.9 bits (92), Expect = 0.62, Method: Composition-based stats.
Identities = 22/194 (11%), Positives = 47/194 (24%), Gaps = 15/194 (7%)
Query: 96 GQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAY 155
+ L H T ++ A++ L E + G H
Sbjct: 45 ANSPQGLGPFANAYWGHKTYKLTPEQNLIAMSHYLKALEIQRIAAKMMAIFGGKNPHPQS 104
Query: 156 FRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGW 215
GGV + + + D+F + I + + + +
Sbjct: 105 LAVGGVTCVMDILDPTRLSEYMDNFKKLRDFIDNAY------YADIKMVAKMYANEPSVT 158
Query: 216 GFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQ 275
GV + + Y + D G + L ++ ++ E+
Sbjct: 159 KPIGVKNFMTHKDF---------VYGKGKDDYIFKATGYILNGDLSKVYDIDEAKITEEA 209
Query: 276 CVNRLLGKNKVGPV 289
+ P
Sbjct: 210 THSWYKDNEPQQPY 223
>gi|4071063|emb|CAA10367.1| NADH Dehydrogenase subunit 7 [Pisum sativum]
Length = 37
Score = 39.9 bits (92), Expect = 0.66, Method: Composition-based stats.
Identities = 19/27 (70%), Positives = 22/27 (81%), Gaps = 3/27 (11%)
Query: 39 DPHIGLLHRGTEKLIETKTFLQAVPYF 65
+PHIGLLH EKLIE KT+LQA+PY
Sbjct: 1 EPHIGLLH---EKLIEYKTYLQALPYI 24
>gi|56476356|ref|YP_157945.1| hypothetical protein ebA1702 [Aromatoleum aromaticum EbN1]
gi|56312399|emb|CAI07044.1| hypothetical protein ebA1702 [Aromatoleum aromaticum EbN1]
Length = 412
Score = 39.9 bits (92), Expect = 0.74, Method: Composition-based stats.
Identities = 9/42 (21%), Positives = 13/42 (30%), Gaps = 1/42 (2%)
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQA 367
G A VE +G + DG + I P +
Sbjct: 326 DGAGLAWVETARGLVLHAVQLDGE-RVAEYAIIGPTQWNFHP 366
>gi|162451465|ref|YP_001613832.1| polyketide synthase [Sorangium cellulosum 'So ce 56']
gi|161162047|emb|CAN93352.1| polyketide synthase [Sorangium cellulosum 'So ce 56']
Length = 5973
Score = 39.5 bits (91), Expect = 0.86, Method: Composition-based stats.
Identities = 18/137 (13%), Positives = 36/137 (26%), Gaps = 9/137 (6%)
Query: 216 GFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQ 275
G G +R W + + + + R +
Sbjct: 970 GAPGDALRRLAERWVEGYAVDWSSLHAGARRSKVSAPTYPFARDRYWSEATPRAASREEA 1029
Query: 276 CVNRLLGKNKVGP------VSASDPKIVPPKRADMKRSMESLIHHFKLY-TEGYHVPVGE 328
R G V + + +RA ++ ++E L +
Sbjct: 1030 GDRRARGAGPQRHAGERARVEMAPAEAATARRASVEAAVEGSGGGQALRLVPVWEPVEAR 1089
Query: 329 VYAAVEAPKGEFGVYLI 345
VEAP+G V+++
Sbjct: 1090 AVGRVEAPRGA--VWVV 1104
Score = 36.8 bits (84), Expect = 5.8, Method: Composition-based stats.
Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 8/94 (8%)
Query: 258 RYLVRMMEMRESVKIIRQ-----CVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLI 312
R + S + +RQ C + ++ VSA P +RA ++ + E
Sbjct: 2584 RMWAWIRVSAASTERVRQFDIDVCDEEGVVCARLSGVSARVHDGAPARRASVEAAAEGSG 2643
Query: 313 HHFKLY-TEGYHVPVGEVYAAVEAPKGEFGVYLI 345
L + VEAP+G V+++
Sbjct: 2644 GGQALRLVPVWEPVEARAVGRVEAPRGA--VWVV 2675
>gi|306481135|emb|CBN08513.1| hydrogen-uptake (NiFe) hydrogenase large subunit [uncultured
prokaryote]
Length = 219
Score = 39.5 bits (91), Expect = 0.92, Method: Composition-based stats.
Identities = 19/126 (15%), Positives = 34/126 (26%), Gaps = 6/126 (4%)
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A+ L + + G H GGV + I +
Sbjct: 60 AVAHYLQALDMQRDASKMMAIFGGKMPHPQSIVVGGVTCVQDIQNPARIAQFKSLLNKFR 119
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
N I + + GTV ++A +G+ S + L + YE
Sbjct: 120 NFIKRAYLSDVLMA------GTVYADEALDGTGAGLKNFMSYGDFKLDDTGFYEAAQLFP 173
Query: 245 FDIPIG 250
+ +
Sbjct: 174 SGVALH 179
>gi|215428605|ref|ZP_03426524.1| hypothetical protein MtubT9_20354 [Mycobacterium tuberculosis T92]
Length = 21
Score = 39.5 bits (91), Expect = 0.99, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 376 QLADVSAILGSLDIVFGEVDR 396
+AD+ A + S+D V G VDR
Sbjct: 1 MVADLIAAVASIDPVMGGVDR 21
>gi|226947040|ref|YP_002802113.1| hydrogenase expression/formation protein HoxV [Azotobacter
vinelandii DJ]
gi|729757|sp|P40597|HOXV_AZOVI RecName: Full=Hydrogenase expression/formation protein hoxV
gi|398006|gb|AAA19507.1| hoxV [Azotobacter vinelandii]
gi|226721967|gb|ACO81138.1| hydrogenase expression/formation protein HoxV [Azotobacter
vinelandii DJ]
Length = 348
Score = 39.5 bits (91), Expect = 0.99, Method: Composition-based stats.
Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 10/76 (13%)
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---QAMEFLCKGHQLA--DV 380
GE +G + D ++ AP + + G ++A +V
Sbjct: 266 AGEGVGLARTARGWLLHRVCLD-DGAVGTWQLLAPTDWNFHADGPLRRRLCGVRVAAGEV 324
Query: 381 SAILG----SLDIVFG 392
A+L +LD
Sbjct: 325 EALLRELILALDPCVA 340
>gi|58042488|gb|AAW63684.1| NADH dehydrogenase subunit 7 [Nymphaea sp. Bergthorsson 0401]
Length = 26
Score = 39.5 bits (91), Expect = 1.0, Method: Composition-based stats.
Identities = 17/26 (65%), Positives = 22/26 (84%)
Query: 20 AHGVLRLILELDGEIVERVDPHIGLL 45
AHGV R +LE++GE+VER +PHIG L
Sbjct: 1 AHGVSRSVLEMNGEVVERAEPHIGSL 26
>gi|399974|sp|P31878|HUPK_AZOVI RecName: Full=Hydrogenase expression/formation protein hupK
gi|580741|emb|CAA45182.1| ORF3 [Azotobacter vinelandii]
Length = 342
Score = 39.2 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 10/76 (13%)
Query: 326 VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---QAMEFLCKGHQLA--DV 380
GE +G + D ++ AP + + G ++A +V
Sbjct: 260 AGEGVGLARTARGWLLHRVCLD-DGAVGTWQLLAPTDWNFHADGPLRRRLCGVRVAAGEV 318
Query: 381 SAILG----SLDIVFG 392
A+L +LD
Sbjct: 319 EALLRELILALDPCVA 334
>gi|37694208|gb|AAQ99024.1| NADH dehydrogenase subunit 7 [Fissidens subbasilaris]
Length = 22
Score = 39.2 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 17/22 (77%), Positives = 21/22 (95%)
Query: 47 RGTEKLIETKTFLQAVPYFDRL 68
RGTEKLIE KT+L+A+PYF+RL
Sbjct: 1 RGTEKLIEYKTYLKALPYFNRL 22
>gi|114321169|ref|YP_742852.1| hypothetical protein Mlg_2020 [Alkalilimnicola ehrlichii MLHE-1]
gi|114227563|gb|ABI57362.1| hypothetical protein Mlg_2020 [Alkalilimnicola ehrlichii MLHE-1]
Length = 379
Score = 39.2 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 16/140 (11%), Positives = 38/140 (27%), Gaps = 13/140 (9%)
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQ--CVNRLLGKNKVGPVSASDPKIVP 298
LD G+ G R+ Q G + + ++P
Sbjct: 215 WPLDPRDEAGESGTAQAGLRETGPFARQRANPALQGVLARHGPGILPRLLAAVLELLVLP 274
Query: 299 PKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIR 358
+ + R++ + +E G V+ +G ++ + +
Sbjct: 275 GRLRNALRAI-----GVEPVSEEVGQVTGTGCGIVDTARGLLLHWVRLH-RGQVADYAVV 328
Query: 359 APGYAHLQAMEFLCKGHQLA 378
AP + +G ++
Sbjct: 329 APTEWNFHP-----RGVLVS 343
>gi|157100119|emb|CAL47093.1| hydrogen-uptake (NiFe) hydrogenase large subunit [uncultured
prokaryote]
Length = 241
Score = 39.2 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 42/152 (27%), Gaps = 10/152 (6%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H T ++ AL+ L E + G H GGV + +
Sbjct: 63 HKTMKFTPEQNLIALSHYLKTLEMQRIAAQMMAIFGGKNPHPQSLTVGGVTCVMDLKDPA 122
Query: 172 DIGCWCDSFPSALN-----DISDLLT-----GNRIFKQRNVNIGTVKLEDAWGWGFSGVM 221
+G + F + +D++ N + N+G G + +
Sbjct: 123 RLGGYLTKFKELADYVHRAYYADIVMAAHAYRNEPSVVQKTNLGNFLSYRFMQTGANSWL 182
Query: 222 IRGSGAAWDLRKSQPYECYSELDFDIPIGKHG 253
G + S+ YE + +
Sbjct: 183 FPARGYIKNWDLSKFYEFDDDKVSEEATHSWY 214
>gi|37960374|gb|AAP70577.1| NADH dehydrogenase subunit 7 [Sphagnum quinquefarium]
gi|37960392|gb|AAP70586.1| NADH dehydrogenase subunit 7 [Sphagnum wulfianum]
Length = 22
Score = 38.8 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 18/22 (81%), Positives = 20/22 (90%)
Query: 47 RGTEKLIETKTFLQAVPYFDRL 68
RGT KLIE KT+LQA+PYFDRL
Sbjct: 1 RGTXKLIEYKTYLQALPYFDRL 22
>gi|265755017|ref|ZP_06089931.1| NADH-quinone oxidoreductase subunit C/D [Bacteroides sp. 3_1_33FAA]
gi|263234628|gb|EEZ20207.1| NADH-quinone oxidoreductase subunit C/D [Bacteroides sp. 3_1_33FAA]
Length = 29
Score = 38.8 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 368 MEFLCKGHQLADVSAILGSLDIVFGEVDR 396
ME +C+ ++AD+ AI G++D V ++DR
Sbjct: 1 METMCRNAKIADLIAIGGTVDYVVPDIDR 29
>gi|213584720|ref|ZP_03366546.1| putative hydrogenase-1 large subunit [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
Length = 51
Score = 38.4 bits (88), Expect = 1.9, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 11/33 (33%), Gaps = 6/33 (18%)
Query: 367 AMEFLCKGHQLA--D----VSAILGSLDIVFGE 393
A E G +LA D + L S D
Sbjct: 1 AYEAALMGTKLAVPDQPLKILRTLHSFDPCLAC 33
>gi|94310231|ref|YP_583441.1| hypothetical protein Rmet_1287 [Cupriavidus metallidurans CH34]
gi|93354083|gb|ABF08172.1| HoxV Hydrogenase expression/formation protein hoxV (CMGI-2)
[Cupriavidus metallidurans CH34]
Length = 384
Score = 38.4 bits (88), Expect = 1.9, Method: Composition-based stats.
Identities = 37/333 (11%), Positives = 79/333 (23%), Gaps = 46/333 (13%)
Query: 51 KLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRIL 110
+L ++ L + A LA+ +P+ + +L E L
Sbjct: 30 QLAPGRSVETWPALLAGLFSLCGHAHRTASQLAISAAAPGLLPVTDAVPAILQRETA--L 87
Query: 111 SHLLNVTTQAMDVGA-LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQD----- 164
HL + + A + + + + + A + R QD
Sbjct: 88 EHLRRIALDWPRLLADPAAAQAAAAQAAESLRRCPLIAAPQEVAPWPRLRQWLQDEWLKM 147
Query: 165 IPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRG 224
P + + + + + R + + G
Sbjct: 148 NPATWLRAWQACGADWLDDWSRRHNGWLPALLQATRQGDTALPQAHTQALRPHEGEAGLR 207
Query: 225 SGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESV-----KIIRQCVNR 279
+ A G +D + + +++R C+
Sbjct: 208 ALAEALAASDHFALQPRWQGCTACTGAWNRLHDAEPAQPWTAWALLGSRLAELVRLCLPD 267
Query: 280 LLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGE 339
G+ G ++ P + A VE +G
Sbjct: 268 APGETGAGRLAWGALATGPR----------------------------QGLAWVEMARGL 299
Query: 340 FGVYLISDGG--NKPYR---CKIRAPGYAHLQA 367
+ D +PYR ++ AP +
Sbjct: 300 LIHQVALDEKLPGQPYRLRSAQVLAPTEWNFHP 332
>gi|255551249|ref|XP_002516671.1| conserved hypothetical protein [Ricinus communis]
gi|223544166|gb|EEF45690.1| conserved hypothetical protein [Ricinus communis]
Length = 71
Score = 38.0 bits (87), Expect = 2.6, Method: Composition-based stats.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 22 GVLRLILELDGEIVERVDPHIGLLHRGT 49
GV R +LE++GE VER +PHIGLL GT
Sbjct: 30 GVSRSVLEMNGEAVERAEPHIGLLQCGT 57
>gi|190360312|emb|CAO00127.1| hydrogen-uptake [NiFe] hydrogenase large subunit [Nautilia
lithotrophica]
Length = 253
Score = 38.0 bits (87), Expect = 2.6, Method: Composition-based stats.
Identities = 21/156 (13%), Positives = 42/156 (26%), Gaps = 10/156 (6%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H T ++ AL+ L E + G H GGV + +
Sbjct: 57 HKTMKFTPEQNLIALSHYLKTLEMQRIAAQMMAIFGGKNPHPQSLTVGGVTCVMDLKDPA 116
Query: 172 DIGCWCDSFPSALN-----DISDLLTGNRIFKQRN-----VNIGTVKLEDAWGWGFSGVM 221
+G + F + +D++ + + N+G G + +
Sbjct: 117 RLGEYLTKFQELADYVNRAYYADIVMAASAYGKEPSVVQKTNLGNFLTYKTMQTGPNSWL 176
Query: 222 IRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYD 257
G + ++ YE + D
Sbjct: 177 FDACGYIKNHDLTKFYEIDESKITEEATHAWYKNLD 212
>gi|162149081|ref|YP_001603542.1| hypothetical protein GDI_3311 [Gluconacetobacter diazotrophicus PAl
5]
gi|161787658|emb|CAP57254.1| hypothetical protein GDI3311 [Gluconacetobacter diazotrophicus PAl
5]
Length = 50
Score = 37.6 bits (86), Expect = 3.1, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 19/48 (39%)
Query: 348 GGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVD 395
G R P AH+ A+E + G DV+ I+ S + D
Sbjct: 2 EGGAVRAAHARDPALAHVAALEHVLAGADADDVAMIVRSFGLSAAAAD 49
>gi|330317528|gb|AEC11105.1| Ni/Fe hydrogenase isozyme 1 [bacterium enrichment culture clone
Dsv_hynA-1_fragment1]
Length = 198
Score = 37.6 bits (86), Expect = 3.3, Method: Composition-based stats.
Identities = 23/173 (13%), Positives = 45/173 (26%), Gaps = 30/173 (17%)
Query: 197 FKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRK----SQPYECYSELDFDIPIGKH 252
R + G + D G A K P+E ++ + K
Sbjct: 26 MADRFLPAGYIMKRDLAGVKDVDQKQIMEHVAHSWYKGADAKHPFEGVTDPRYTNLEDKD 85
Query: 253 GDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRA---------- 302
+ + M E E+ + + V G K + +
Sbjct: 86 RYSWMKAPRYMSEPMETGPLAKVLVAYAKGHKATVKTVDMVLKNLGVGKEALFSTLGRTA 145
Query: 303 -----------DMKRSMESL-----IHHFKLYTEGYHVPVGEVYAAVEAPKGE 339
+++ ++ L KLY + + V+AP+G
Sbjct: 146 ARGIETAVIAGEIEGWVKKLAANVKKGDTKLYQDWKMPDSAQGVGFVDAPRGA 198
>gi|268578419|ref|XP_002644192.1| C. briggsae CBR-NUCB-1 protein [Caenorhabditis briggsae]
Length = 449
Score = 37.6 bits (86), Expect = 3.7, Method: Composition-based stats.
Identities = 22/255 (8%), Positives = 70/255 (27%), Gaps = 22/255 (8%)
Query: 75 NQEHAYALAVEKLLGI--EIPIRGQLIRVLYSE---IGRILSHLLNVTTQAMDVGALTPP 129
+ + AY +E+++ I P + ++ + E G+I H+ ++ + D
Sbjct: 62 SYQFAYTKYLEEVVKILETDPKFNERLKNMNEEDIKAGKIADHIDDLPQEVFDKLHRAKF 121
Query: 130 LWGFEEREKLMVFYERASGSR--MHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
R+++ + G+ + + + +L + I +
Sbjct: 122 EEIERLRKQIEEQIKADGGAHNVQMPDHLDVQELEKFHKEDLRKLIQKTVADMNKMDDQR 181
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRK-------------S 234
+ + KQ + ++ D K
Sbjct: 182 KEDFKQYEMKKQAEEDHKLAQMSPEEREKAKREHEEAEKRHNDHEKLKHPGSKDQLQEVW 241
Query: 235 QPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDP 294
+ + + +D + ES+ + + ++ +
Sbjct: 242 EETDHLEKDQYDPKTFFALHDLNGDGFWNDFELESLFQLE--LEKMYNETNPDDDMKERA 299
Query: 295 KIVPPKRADMKRSME 309
+ + R + + ++
Sbjct: 300 EEMYRMREHVMKQID 314
>gi|190360310|emb|CAO00128.1| hydrogen-uptake [NiFe] hydrogenase large subunit [Nitratiruptor
tergarcus]
Length = 245
Score = 37.6 bits (86), Expect = 3.8, Method: Composition-based stats.
Identities = 11/79 (13%), Positives = 17/79 (21%)
Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
A+T L + + G H GGV + I + D
Sbjct: 72 AVTHYLQALDLQRDAAKMMAIFGGKNPHPQSIVVGGVTCVQDIKNPARIALYKDLLKGFT 131
Query: 185 NDISDLLTGNRIFKQRNVN 203
I +
Sbjct: 132 RFIKGAYLPDIYMAGTMYG 150
>gi|195108103|ref|XP_001998632.1| GI23529 [Drosophila mojavensis]
gi|193915226|gb|EDW14093.1| GI23529 [Drosophila mojavensis]
Length = 352
Score = 37.2 bits (85), Expect = 4.0, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 36/150 (24%), Gaps = 8/150 (5%)
Query: 193 GNRIFKQRNVNI--GTVKLEDAWGWGFSGVMIRG-SGAAWDLRKSQPYECYSELDFDIPI 249
+ + R N+ G G G R SG D R P + + P
Sbjct: 38 RDDQWHDRVGNLEHGRWNKHGDRWQGRFGRWHRDESGWHRDDRWRHPNFPNHGMRPEQPT 97
Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
V + ES + Q + + +
Sbjct: 98 ALPSSTAA--PVETSQAPESTQAPEQPIESSQAPEVTTEAPEQSTVAPEETTEVPEETTV 155
Query: 310 SLIHHFKLYTEGYHVPVGEVYA---AVEAP 336
+ + E VP A + EAP
Sbjct: 156 APEESTQAPEETTEVPEQTTVAPEESTEAP 185
>gi|156363506|ref|XP_001626084.1| predicted protein [Nematostella vectensis]
gi|156212947|gb|EDO33984.1| predicted protein [Nematostella vectensis]
Length = 353
Score = 37.2 bits (85), Expect = 4.1, Method: Composition-based stats.
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 336 PKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLAD 379
P+G+ ++ + R + R H + + +G AD
Sbjct: 93 PRGKLMHHVRTRINQIVKRYRGR---MLHWDVINEMLQGSFFAD 133
>gi|157100061|emb|CAL47110.1| hydrogen-uptake (NiFe) hydrogenase large subunit [uncultured
prokaryote]
Length = 241
Score = 37.2 bits (85), Expect = 4.2, Method: Composition-based stats.
Identities = 20/139 (14%), Positives = 37/139 (26%), Gaps = 10/139 (7%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H ++ A+ L E +++++ + G H Y G +
Sbjct: 59 HPAMKMPPEANLMAVAHYLEALEWQKEIVKVHTIFGGKNPHPNYLVGGMACAINTDDAGG 118
Query: 172 DIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDL 231
+ L + G R +Q V WG G + +
Sbjct: 119 LNAERLAYVKALLEE------GKRFIEQVYVPDLLAIASFYKEWGSIGEGLA----NYMS 168
Query: 232 RKSQPYECYSELDFDIPIG 250
P Y+ +F G
Sbjct: 169 YGEFPLNGYNGSEFKYKPG 187
>gi|37960350|gb|AAP70565.1| NADH dehydrogenase subunit 7 [Sphagnum aongstroemii]
Length = 22
Score = 37.2 bits (85), Expect = 4.3, Method: Composition-based stats.
Identities = 18/21 (85%), Positives = 19/21 (90%)
Query: 48 GTEKLIETKTFLQAVPYFDRL 68
GTEKLIE KT LQA+PYFDRL
Sbjct: 2 GTEKLIEYKTXLQALPYFDRL 22
>gi|309357889|emb|CAP34947.2| CBR-NUCB-1 protein [Caenorhabditis briggsae AF16]
Length = 454
Score = 37.2 bits (85), Expect = 4.4, Method: Composition-based stats.
Identities = 22/255 (8%), Positives = 70/255 (27%), Gaps = 22/255 (8%)
Query: 75 NQEHAYALAVEKLLGI--EIPIRGQLIRVLYSE---IGRILSHLLNVTTQAMDVGALTPP 129
+ + AY +E+++ I P + ++ + E G+I H+ ++ + D
Sbjct: 62 SYQFAYTKYLEEVVKILETDPKFNERLKNMNEEDIKAGKIADHIDDLPQEVFDKLHRAKF 121
Query: 130 LWGFEEREKLMVFYERASGSR--MHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDI 187
R+++ + G+ + + + +L + I +
Sbjct: 122 EEIERLRKQIEEQIKADGGAHNVQMPDHLDVQELEKFHKEDLRKLIQKTVADMNKMDDQR 181
Query: 188 SDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRK-------------S 234
+ + KQ + ++ D K
Sbjct: 182 KEDFKQYEMKKQAEEDHKLAQMSPEEREKAKREHEEAEKRHNDHEKLKHPGSKDQLQEVW 241
Query: 235 QPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDP 294
+ + + +D + ES+ + + ++ +
Sbjct: 242 EETDHLEKDQYDPKTFFALHDLNGDGFWNDFELESLFQLE--LEKMYNETNPDDDMKERA 299
Query: 295 KIVPPKRADMKRSME 309
+ + R + + ++
Sbjct: 300 EEMYRMREHVMKQID 314
>gi|37960368|gb|AAP70574.1| NADH dehydrogenase subunit 7 [Sphagnum perichaetiale]
Length = 22
Score = 37.2 bits (85), Expect = 5.1, Method: Composition-based stats.
Identities = 17/21 (80%), Positives = 19/21 (90%)
Query: 48 GTEKLIETKTFLQAVPYFDRL 68
GTEKLI KT+LQA+PYFDRL
Sbjct: 2 GTEKLIXYKTYLQALPYFDRL 22
>gi|296242924|ref|YP_003650411.1| family 4 glycoside hydrolase [Thermosphaera aggregans DSM 11486]
gi|296095508|gb|ADG91459.1| glycoside hydrolase family 4 [Thermosphaera aggregans DSM 11486]
Length = 461
Score = 36.8 bits (84), Expect = 5.5, Method: Composition-based stats.
Identities = 34/246 (13%), Positives = 66/246 (26%), Gaps = 30/246 (12%)
Query: 33 EIVERVDPHIGLLHRGT---EKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLG 89
E++ G +RG E + + + Y+ + LAV
Sbjct: 98 EMMREATERKGY-YRGINSVEWNMVS-DYHTIWGYYQ-------------FKLAVSIARD 142
Query: 90 IE---IPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERA 146
IE + E+ +LS + V + G + E R
Sbjct: 143 IEEYAPDAWLINVANPVFELTTLLSRITKVKNIGICHGHMEFWNIVRELRLDPSKVEAEM 202
Query: 147 SGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGT 206
SG R D + + I + + T N ++
Sbjct: 203 SGFNHVIWLTRFKYDGLDGYELIDKWIKEEAEKYWRKWWAT----TSNPF--DIQLSPAA 256
Query: 207 VKLEDAWGWGFSGVMIRGSGAAWDLR---KSQPYECYSELDFDIPIGKHGDCYDRYLVRM 263
V + +G G +RG + K + Y Y D ++ + + +
Sbjct: 257 VDMYLKYGMFPIGDTVRGGTWKYHWNLETKKKWYGPYGGPDSEVGWALYTTYLAYQMEMI 316
Query: 264 MEMRES 269
++
Sbjct: 317 KGFVQA 322
>gi|213850072|ref|ZP_03380970.1| hydrogenase 2 large subunit [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
Length = 43
Score = 36.8 bits (84), Expect = 5.7, Method: Composition-based stats.
Identities = 5/26 (19%), Positives = 7/26 (26%), Gaps = 6/26 (23%)
Query: 375 HQLAD------VSAILGSLDIVFGEV 394
+AD V + S D
Sbjct: 1 TPVADPNKPLEVVRTIHSFDPCMACA 26
>gi|157100075|emb|CAL47117.1| hydrogen-uptake (NiFe) hydrogenase large subunit [uncultured
prokaryote]
Length = 195
Score = 36.8 bits (84), Expect = 5.9, Method: Composition-based stats.
Identities = 22/176 (12%), Positives = 43/176 (24%), Gaps = 14/176 (7%)
Query: 76 QEHAY-ALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFE 134
+H Y + E L H + ++ + L
Sbjct: 20 HKHPYNCSQGDLAAVQEKLANFVNAGRLGLFANGYWGHAQYKLSPEENLIHMNHYLEALR 79
Query: 135 EREKLMVFYERASGSRMHAAYFRPGGVHQDI----PPEL------VEDIGCWCDSFPSAL 184
+ ++ G H GGV + P ++D +
Sbjct: 80 IQREVSKAIAIFGGKTPHPQNLVVGGVTSVMGMLNPQRWNDYLFIIKDTQEFLKRAYLPD 139
Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAW--DLRKSQPYE 238
+ G+ I G + + SG W D K++P++
Sbjct: 140 MKMVVAAYGDNIKAGEGRGHGNSMCSGGYQSSDDEP-LFASGIIWGHDFSKTEPFD 194
>gi|323357216|ref|YP_004223612.1| eukaryotic-type DNA primase [Microbacterium testaceum StLB037]
gi|323273587|dbj|BAJ73732.1| predicted eukaryotic-type DNA primase [Microbacterium testaceum
StLB037]
Length = 341
Score = 36.5 bits (83), Expect = 8.3, Method: Composition-based stats.
Identities = 25/179 (13%), Positives = 53/179 (29%), Gaps = 16/179 (8%)
Query: 135 EREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGN 194
RE + + + SG+R + E ++ + + D +T N
Sbjct: 163 LREAGLEAWIKTSGNRGLHVFCPIEP-----THEFLDVRHAVIAAARELERRMPDAVTTN 217
Query: 195 RIFKQRNVNIGTVKLEDAWGWGFSG-------VMIRGS-GAAWDLRKSQPYECYSELDFD 246
++R I + +G S WD ++
Sbjct: 218 WWKEERGQRIFVDFNQANRDRTMAGAYSPRALPTATVSTPIGWDELDDLDPSAFTVRSIP 277
Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGK---NKVGPVSASDPKIVPPKRA 302
+ GD + + + ++ ++ ++ LG+ P +P V P RA
Sbjct: 278 ERLASIGDPWADFAANPGRIDTLLEWWQRDLDDGLGELPFPPEFPKMPGEPPRVQPSRA 336
>gi|71909590|ref|YP_287177.1| hypothetical protein Daro_3980 [Dechloromonas aromatica RCB]
gi|71849211|gb|AAZ48707.1| hypothetical protein Daro_3980 [Dechloromonas aromatica RCB]
Length = 308
Score = 36.5 bits (83), Expect = 8.4, Method: Composition-based stats.
Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 17/80 (21%)
Query: 326 VGEVYAAVEAPKGEFGV--YLISDGGNKPYRCKIRAPG---YAHLQAMEFLCKGHQLADV 380
G A +G +++ K +++AP +A A+ L + + A +
Sbjct: 225 DGWGVAQTLTARGVLTHAVHVV---DGKVANYRVQAPTDGFFADAGALSSLLENCRFASL 281
Query: 381 --------SAILGSLDIVFG 392
AIL LD
Sbjct: 282 DQAKQVLNQAILA-LDPCLP 300
>gi|295688306|ref|YP_003591999.1| hypothetical protein Cseg_0875 [Caulobacter segnis ATCC 21756]
gi|295430209|gb|ADG09381.1| conserved hypothetical protein [Caulobacter segnis ATCC 21756]
Length = 862
Score = 36.1 bits (82), Expect = 9.8, Method: Composition-based stats.
Identities = 33/205 (16%), Positives = 55/205 (26%), Gaps = 19/205 (9%)
Query: 48 GTEKLI---ETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLG----------IEIPI 94
G E+++ + + V R D PM E A +EK++ +
Sbjct: 313 GIERMMSKGDGTPYESVVTVGMRGDGDEPMA-EGAATQLLEKIVADQRQIIADVTGKPAD 371
Query: 95 RGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSR--MH 152
+ I LY E+ H + V + A RA G H
Sbjct: 372 QTPQIWALYKEVQDYYDHGMRVPDDVTLLFADDNWGQIRRLPVAGKDKLPRAGGYGVYYH 431
Query: 153 AAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDA 212
Y ++ I V + D + + +L N + + L A
Sbjct: 432 FDYVGGPRNYKWINTNQVAKVWQQMD--LAYQREARNLWIVNVGDIKPMEYPLSFFLRMA 489
Query: 213 WGWGFSGVMIRGSG-AAWDLRKSQP 236
W + W P
Sbjct: 490 WNPEAMTPKALAAFPRDWAGETFGP 514
>gi|157100059|emb|CAL47109.1| hydrogen-uptake (NiFe) hydrogenase large subunit [uncultured
prokaryote]
Length = 241
Score = 36.1 bits (82), Expect = 9.9, Method: Composition-based stats.
Identities = 20/139 (14%), Positives = 37/139 (26%), Gaps = 10/139 (7%)
Query: 112 HLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171
H ++ A+ L E +++++ + G H Y G +
Sbjct: 59 HPAMKMPPEANLMAVAHYLEALEWQKEIVKVHTIFGGKNPHPNYLVGGMACAVNTDDAGG 118
Query: 172 DIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDL 231
+ L + G R +Q V WG G + +
Sbjct: 119 LNAERLAYVKALLEE------GKRFIEQVYVPDLLAIASFYKEWGSIGEGLA----NYMS 168
Query: 232 RKSQPYECYSELDFDIPIG 250
P Y+ +F G
Sbjct: 169 YGEFPLNGYNGSEFKYKPG 187
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.313 0.145 0.440
Lambda K H
0.267 0.0445 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,735,982,204
Number of Sequences: 14124377
Number of extensions: 229226746
Number of successful extensions: 430153
Number of sequences better than 10.0: 4314
Number of HSP's better than 10.0 without gapping: 4207
Number of HSP's successfully gapped in prelim test: 107
Number of HSP's that attempted gapping in prelim test: 416373
Number of HSP's gapped (non-prelim): 6086
length of query: 396
length of database: 4,842,793,630
effective HSP length: 141
effective length of query: 255
effective length of database: 2,851,256,473
effective search space: 727070400615
effective search space used: 727070400615
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 83 (36.5 bits)