RPSBLAST alignment for GI: 254780855 and conserved domain: TIGR01962

>gnl|CDD|162627 TIGR01962, NuoD, NADH dehydrogenase I, D subunit. This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. Length = 386

 Score =  622 bits (1607), Expect = e-179
 Identities = 231/387 (59%), Positives = 290/387 (74%), Gaps = 4/387 (1%)

Query: 10  TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
            +N GPQHP+ HGVLRLILELDGE V R DPHIG LHRGTEKL E +T+ Q +PY DRLD
Sbjct: 4   ILNLGPQHPSTHGVLRLILELDGEYVVRADPHIGYLHRGTEKLAENRTYQQYIPYTDRLD 63

Query: 70  YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
           Y++P + E AY LAVEKLLGIE+P R Q+IRV+ SE+ RI SHLL + T A+D+GA+TP 
Sbjct: 64  YLSPFSNELAYCLAVEKLLGIEVPRRAQVIRVMLSELNRISSHLLFIGTHALDLGAMTPF 123

Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
           L+ F EREK++  +E  +G+RMH+AYFR GGV  D+P   +E+I  + + FP  L D   
Sbjct: 124 LYAFREREKILDLFEAITGARMHSAYFRIGGVALDLPENWLEEIREFLEQFPKRLRDYET 183

Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
           LL  NRI+KQR   +G V  +DA  WG +G M+RGSG  WD+RKS+PYE Y E DFD+P+
Sbjct: 184 LLNENRIWKQRTQGVGVVSAKDALDWGLTGPMLRGSGIDWDIRKSEPYEGYDEYDFDVPV 243

Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
           G +GDCYDRYL+R++EMRES+KII QC+ ++      GP+ A +PK+ PP +  M  SME
Sbjct: 244 GGNGDCYDRYLLRVLEMRESIKIIEQCLEKM----PPGPIKADNPKLAPPPKERMLTSME 299

Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
           +LIHHFKL TEG+ VP GEVY  +E+PKGE G Y+ISDGG KPYR KIRAP +AHLQA+E
Sbjct: 300 ALIHHFKLVTEGFRVPAGEVYVPIESPKGELGFYIISDGGTKPYRLKIRAPSFAHLQALE 359

Query: 370 FLCKGHQLADVSAILGSLDIVFGEVDR 396
            +C GH LAD+ AILGS+D V GEVDR
Sbjct: 360 AMCVGHYLADLIAILGSIDPVMGEVDR 386