RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780855|ref|YP_003065268.1| NADH dehydrogenase subunit D
[Candidatus Liberibacter asiaticus str. psy62]
         (396 letters)



>gnl|CDD|180385 PRK06075, PRK06075, NADH dehydrogenase subunit D; Validated.
          Length = 392

 Score =  760 bits (1965), Expect = 0.0
 Identities = 269/392 (68%), Positives = 318/392 (81%), Gaps = 2/392 (0%)

Query: 5   KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
           + R++T+NFGPQHPAAHGVLRLILELDGE+V R DPHIG LHRGTEKL E +T+LQA+PY
Sbjct: 3   EIRNYTLNFGPQHPAAHGVLRLILELDGEVVVRADPHIGYLHRGTEKLAEYRTYLQAIPY 62

Query: 65  FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
           FDRLDYV+PMN EHAY LAVEKLLGIE+P R Q IRVL+ E+ RILSHLL + T A+D+G
Sbjct: 63  FDRLDYVSPMNNEHAYCLAVEKLLGIEVPERAQYIRVLFLELNRILSHLLWLGTHALDLG 122

Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
           A+T  LWGF EREKL+  YE  +G+RMH AY RPGGV +D+P  L+EDI  + D FP  L
Sbjct: 123 AMTVFLWGFREREKLLDLYEAVTGARMHHAYIRPGGVRRDLPDGLLEDIRDFLDYFPKRL 182

Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
           +D   LLT NRI+KQR V +G V  E A   GF+G M+R SG AWDLRKSQPYE Y ELD
Sbjct: 183 DDYETLLTDNRIWKQRLVGVGVVSKERALALGFTGPMLRASGVAWDLRKSQPYEVYDELD 242

Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
           FD+P+GK+GDCYDRYLVR+ EMR+S++II QC++RL  +   GPV   DPKI PP R +M
Sbjct: 243 FDVPVGKNGDCYDRYLVRVEEMRQSLRIIEQCLDRL--RPPPGPVMVDDPKIAPPARLEM 300

Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
           K SME+LIHHFKL TEG+ VP GEVYAAVE+PKGEFGVYL+SDGGNKPYR KIRAP +AH
Sbjct: 301 KTSMEALIHHFKLVTEGFRVPAGEVYAAVESPKGEFGVYLVSDGGNKPYRVKIRAPSFAH 360

Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
           LQA++ +C+GH LADV AI+GSLDIVFGEVDR
Sbjct: 361 LQALDEMCRGHMLADVVAIIGSLDIVFGEVDR 392


>gnl|CDD|162627 TIGR01962, NuoD, NADH dehydrogenase I, D subunit.  This model
           recognizes specificially the D subunit of NADH
           dehydrogenase I complex. It excludes the related chain
           of NAD(P)H-quinone oxidoreductases from chloroplast and
           Synechocystis, where the quinone may be plastoquinone
           rather than ubiquinone. This subunit often appears as a
           C/D fusion.
          Length = 386

 Score =  622 bits (1607), Expect = e-179
 Identities = 231/387 (59%), Positives = 290/387 (74%), Gaps = 4/387 (1%)

Query: 10  TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
            +N GPQHP+ HGVLRLILELDGE V R DPHIG LHRGTEKL E +T+ Q +PY DRLD
Sbjct: 4   ILNLGPQHPSTHGVLRLILELDGEYVVRADPHIGYLHRGTEKLAENRTYQQYIPYTDRLD 63

Query: 70  YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
           Y++P + E AY LAVEKLLGIE+P R Q+IRV+ SE+ RI SHLL + T A+D+GA+TP 
Sbjct: 64  YLSPFSNELAYCLAVEKLLGIEVPRRAQVIRVMLSELNRISSHLLFIGTHALDLGAMTPF 123

Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
           L+ F EREK++  +E  +G+RMH+AYFR GGV  D+P   +E+I  + + FP  L D   
Sbjct: 124 LYAFREREKILDLFEAITGARMHSAYFRIGGVALDLPENWLEEIREFLEQFPKRLRDYET 183

Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
           LL  NRI+KQR   +G V  +DA  WG +G M+RGSG  WD+RKS+PYE Y E DFD+P+
Sbjct: 184 LLNENRIWKQRTQGVGVVSAKDALDWGLTGPMLRGSGIDWDIRKSEPYEGYDEYDFDVPV 243

Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309
           G +GDCYDRYL+R++EMRES+KII QC+ ++      GP+ A +PK+ PP +  M  SME
Sbjct: 244 GGNGDCYDRYLLRVLEMRESIKIIEQCLEKM----PPGPIKADNPKLAPPPKERMLTSME 299

Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369
           +LIHHFKL TEG+ VP GEVY  +E+PKGE G Y+ISDGG KPYR KIRAP +AHLQA+E
Sbjct: 300 ALIHHFKLVTEGFRVPAGEVYVPIESPKGELGFYIISDGGTKPYRLKIRAPSFAHLQALE 359

Query: 370 FLCKGHQLADVSAILGSLDIVFGEVDR 396
            +C GH LAD+ AILGS+D V GEVDR
Sbjct: 360 AMCVGHYLADLIAILGSIDPVMGEVDR 386


>gnl|CDD|183437 PRK12322, PRK12322, NADH dehydrogenase subunit D; Provisional.
          Length = 366

 Score =  412 bits (1060), Expect = e-115
 Identities = 165/392 (42%), Positives = 227/392 (57%), Gaps = 28/392 (7%)

Query: 5   KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
           ++    +N GPQHP+ HGV RL+L++DGEI+    P IG LHRGTEKL E+  + Q +PY
Sbjct: 3   RTEEMLLNVGPQHPSTHGVFRLVLKIDGEIIVEATPVIGYLHRGTEKLAESLQYTQIIPY 62

Query: 65  FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
            DR+DY++ M   + Y  AVE ++G+E+P R + +RV+  E+GRI SHL+   T  +D+G
Sbjct: 63  TDRMDYLSAMTNNYVYCHAVETMMGLEVPERAEYLRVIAMELGRIASHLVWWGTYLLDIG 122

Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184
           A++P L+ F ERE ++       G+R+   Y R GGV  D P   +E +  +       L
Sbjct: 123 AVSPFLYAFREREMIINLLNELCGARLTFNYMRIGGVKWDAPDGWIEKVKEFVPYMREQL 182

Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244
               DL+TGN IF  R   +G    E+A  +  SGV +R +G  WDLRK +PY  Y   D
Sbjct: 183 AGYHDLVTGNEIFLNRVKGVGIYSAEEAISYSLSGVNLRCTGVNWDLRKDEPYSIYDRFD 242

Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304
           FDIP+G  GDC+DRY+ RM E+ +S+KII Q V +     K GPV A  PKI+       
Sbjct: 243 FDIPVGSVGDCWDRYVCRMQEIEQSLKIIEQAVEQF---PKEGPVLAKVPKIIKA----- 294

Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364
                               P GE Y  +E+P+GE G Y+ SDG  KPYR K R P + +
Sbjct: 295 --------------------PKGEAYVRIESPRGEIGCYIASDGKKKPYRLKFRRPSFYN 334

Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
           LQ +  L KG  +A++ AILGS+DIV GEVD 
Sbjct: 335 LQILPKLLKGENIANLIAILGSIDIVLGEVDG 366


>gnl|CDD|183955 PRK13292, PRK13292, trifunctional NADH dehydrogenase I subunit
           B/C/D; Provisional.
          Length = 788

 Score =  393 bits (1012), Expect = e-110
 Identities = 177/386 (45%), Positives = 242/386 (62%), Gaps = 4/386 (1%)

Query: 11  INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
           +N GPQHP  HG++R +L+LDGE +  +D  IG  HRG EK+ E + + Q +PY DR+DY
Sbjct: 407 LNLGPQHPGTHGIIRFVLKLDGEEIVDMDSDIGYHHRGAEKIGERQHWNQFIPYTDRIDY 466

Query: 71  VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
           +A +    AY  +VE L GIE+P R   IRV+ SE+ RI +HL+ + T A DVGA+TP  
Sbjct: 467 LAGVQNNLAYVNSVETLCGIEVPDRAIYIRVMLSELFRIANHLVWLGTFAADVGAMTPVF 526

Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190
           + F +REK+    E  +G RMH A+FR GGV +D+P    E +  +   FP  L +  DL
Sbjct: 527 YTFTDREKIFDIVEMITGGRMHPAWFRIGGVAEDLPEGWKEAVEAFLRWFPGRLKEYEDL 586

Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250
           LTGN IFK R   +G +  ++A  WG SG  +R  G AWDLRK  PY  Y   DF++P  
Sbjct: 587 LTGNPIFKARLKGVGVITRDEAVEWGISGPNLRACGLAWDLRKKMPYGGYDRFDFEVPTA 646

Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310
           + GDCY RYLVRM EMR+S++I+RQ    + G   +      D + V P++ D  + +ES
Sbjct: 647 EGGDCYARYLVRMEEMRQSLRIVRQAAAGMPGGRWISD----DYRYVLPQKRDTLKDIES 702

Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370
           LIHHF   T G   P GE YAA+EAPKGE G +++SDG N  YR +IR P + H+QA+  
Sbjct: 703 LIHHFVNVTRGPAPPKGECYAAIEAPKGENGYFVVSDGLNIAYRMRIRTPSFPHIQALPL 762

Query: 371 LCKGHQLADVSAILGSLDIVFGEVDR 396
           L +G  +AD  AI+GS+D V  ++DR
Sbjct: 763 LSRGWLVADFLAIIGSIDFVLADLDR 788


>gnl|CDD|183294 PRK11742, PRK11742, bifunctional NADH:ubiquinone oxidoreductase
           subunit C/D; Provisional.
          Length = 575

 Score =  376 bits (969), Expect = e-105
 Identities = 159/390 (40%), Positives = 230/390 (58%), Gaps = 12/390 (3%)

Query: 11  INFGPQHPAAHGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69
           +N GP HP+AHG  R++L+LDGE IV+ V P IG  HRG EK+ E +++   +PY DR+D
Sbjct: 194 LNLGPNHPSAHGAFRIVLQLDGEEIVDCV-PDIGYHHRGAEKMGERQSWHSYIPYTDRID 252

Query: 70  YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
           Y+     E  Y LAVEKL GI +P R  +IRV+ SE+ RI SHLL + T   DVGA+TP 
Sbjct: 253 YLGGCMNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYIGTFIQDVGAMTPV 312

Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIP---PELVEDIGCWCDSFPSALND 186
            + F +R+K+    E  +G RMH A+FR GGV  D+P     L+ +   W    P  L++
Sbjct: 313 FFAFTDRQKIYDVIEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDW---MPKRLDE 369

Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246
                  N I K R   +     ++A  WG +G  +R +G  +D+RK++PY  Y   DF+
Sbjct: 370 YEKAALRNSILKGRTQGVAAYNAKEALEWGVTGAGLRATGIDFDVRKARPYSGYENFDFE 429

Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306
           +P+G +GDCYDR +V++ EMR+S++II QC++ +      GP  A  P   PP +    +
Sbjct: 430 VPVGGNGDCYDRVMVKVEEMRQSLRIIEQCLDNM----PEGPFKADHPLTTPPPKERTLQ 485

Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
            +E+LI HF   + G  +P  E +  +EA KG    YL SDG    YR +IR P +AHLQ
Sbjct: 486 HIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQ 545

Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
            +  + +G  ++D+   LGS+D V  +VDR
Sbjct: 546 QIPSVIRGSLVSDLIVYLGSIDFVMSDVDR 575


>gnl|CDD|180969 PRK07415, PRK07415, NAD(P)H-quinone oxidoreductase subunit H;
           Validated.
          Length = 394

 Score =  348 bits (895), Expect = 1e-96
 Identities = 167/390 (42%), Positives = 228/390 (58%), Gaps = 12/390 (3%)

Query: 11  INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70
           +NFGP HP+ HGVLRLI+ LDGE V   +P IG LHRG EK+ E +T +  VPY  R DY
Sbjct: 13  LNFGPHHPSMHGVLRLIVTLDGEDVVDCEPVIGYLHRGMEKIAENRTNVMYVPYVSRWDY 72

Query: 71  VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
            A M  E     A EKL  I +P R   IRV+  E+ RI +HLL +     DVGA TP  
Sbjct: 73  AAGMFNEAITVNAPEKLANIPVPKRASYIRVIMLELNRIANHLLWLGPFLADVGAQTPFF 132

Query: 131 WGFEEREKLMVFYERASGSRM-HAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189
           + F ERE +   +E A+G R+ +  YFR GGV  D+P   +E    +CD F   +++   
Sbjct: 133 YIFREREMIYDLWEAATGQRLINNNYFRIGGVAADLPYGWLEKCLDFCDYFGPKIDEYEK 192

Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249
           L+T N IF++R   +GT+  E+A  WG SG M+R SG  WDLRK   YECY + D+D+  
Sbjct: 193 LITNNPIFRRRIEGLGTISREEAINWGLSGPMLRASGVKWDLRKVDHYECYDDFDWDVAW 252

Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS-M 308
              GDC  RY VR+ EMRESVKIIRQ    + G    GP    + K    + A+ K+S  
Sbjct: 253 ETEGDCLARYRVRIEEMRESVKIIRQACKGIPG----GPYENLEAK----RMAEGKKSEW 304

Query: 309 ESLIHHF--KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366
               + +  K     + +P GE+Y  +E+ KGE G+++  +    P+R KIRA  + +LQ
Sbjct: 305 NGFDYQYVAKKVAPTFKIPNGELYVRLESGKGELGIFIQGNNDVTPWRWKIRAADFNNLQ 364

Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
            +  L KG ++AD+ AILGS+D++ G VDR
Sbjct: 365 ILPHLLKGAKVADIMAILGSIDVIMGSVDR 394


>gnl|CDD|163204 TIGR03295, frhA, coenzyme F420 hydrogenase, subunit alpha.  This
           model represents that clade of F420-dependent
           hydrogenases (FRH) beta subunits found exclusively and
           universally in methanogenic archaea. This protein is a
           member of the Nickel-dependent hydrogenase superfamily
           represented by Pfam model, pfam00374.
          Length = 411

 Score = 37.9 bits (88), Expect = 0.005
 Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 1/94 (1%)

Query: 22  GVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAY 80
           G  +L+LE+D E IVE+ D       RG EKL+  KT   A     R+  + P+    A 
Sbjct: 15  GHAKLVLEVDDEGIVEKGDYLSITPVRGFEKLLVGKTAEFAPIIVSRICGICPIAHTLAS 74

Query: 81  ALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLL 114
             A+E  +  E+P  G L+R L     R+ SH L
Sbjct: 75  VEAIEDSIDCEVPKDGLLLRELTGCANRLHSHAL 108


>gnl|CDD|178330 PLN02729, PLN02729, PSII-Q subunit.
          Length = 220

 Score = 32.1 bits (73), Expect = 0.25
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 11/68 (16%)

Query: 167 PELVEDIGCWCDS---FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIR 223
             L ED G W D     PS  N I +  TG R F ++ + +  +        G  G M R
Sbjct: 71  VSLAEDNGFWLDGPLPVPSVDNKIVNEKTGTRSFLKKGIYMADI--------GTKGRMYR 122

Query: 224 GSGAAWDL 231
               A+DL
Sbjct: 123 VKKYAFDL 130


>gnl|CDD|184691 PRK14464, PRK14464, ribosomal RNA large subunit methyltransferase
          N; Provisional.
          Length = 344

 Score = 32.0 bits (73), Expect = 0.31
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 6/34 (17%)

Query: 16 QHPAAHGVLRLILEL-DGEIVERVDPHIGLLHRG 48
          +HP   G  RL++EL DG++VE V     LL R 
Sbjct: 68 EHPGEDGSARLLVELADGQMVESV-----LLPRD 96


>gnl|CDD|179078 PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta;
           Reviewed.
          Length = 791

 Score = 29.4 bits (67), Expect = 1.6
 Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 10/49 (20%)

Query: 84  VEKLLGIEIPIRGQLIRVLYSEIGRILSHL-LNVTTQAMDVGALTPPLW 131
           + +LLG EI            EI  IL  L   VT    D   +T P W
Sbjct: 410 INRLLGTEISD---------EEIVDILKRLGFEVTEVDGDGLTVTVPSW 449


>gnl|CDD|182181 PRK09983, pflD, putative formate acetyltransferase 2; Provisional.
          Length = 765

 Score = 29.4 bits (66), Expect = 1.8
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 318 YTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKP 352
           YT   HVP+G V  A   P G F    ++DGG  P
Sbjct: 617 YTVSAHVPLGSVVGA--TPDGRFAGEQLADGGLSP 649


>gnl|CDD|119240 pfam10720, DUF2515, Protein of unknown function (DUF2515).  This
           family is conserved in Firmicutes. Several members are
           annotated as YppC. The function is not known.
          Length = 306

 Score = 28.4 bits (64), Expect = 3.0
 Identities = 13/23 (56%), Positives = 17/23 (73%)

Query: 124 GALTPPLWGFEEREKLMVFYERA 146
           G+L P L   EER++L +FYERA
Sbjct: 55  GSLYPSLLSEEERKRLFLFYERA 77


>gnl|CDD|181030 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.
          Length = 859

 Score = 28.2 bits (64), Expect = 3.7
 Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 14/49 (28%)

Query: 332 AVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADV 380
           A+    G FG Y+    G+KP R                L KG+    V
Sbjct: 654 AMVLRSGRFGPYVQEGEGDKPRR--------LS------LPKGNNPECV 688


>gnl|CDD|147957 pfam06080, DUF938, Protein of unknown function (DUF938).  This
           family consists of several hypothetical proteins from
           both prokaryotes and eukaryotes. The function of this
           family is unknown.
          Length = 201

 Score = 27.4 bits (61), Expect = 6.2
 Identities = 14/45 (31%), Positives = 16/45 (35%), Gaps = 5/45 (11%)

Query: 144 ERASGSRMHAAYFRPG-----GVHQDIPPELVEDIGCWCDSFPSA 183
           E ASG+  HA +F P          D  P L   I  W D     
Sbjct: 31  EIASGTGQHAVFFAPLLPNLTWQPSDPDPNLRGSIAAWADQQGLR 75


>gnl|CDD|182223 PRK10073, PRK10073, putative glycosyl transferase; Provisional.
          Length = 328

 Score = 27.3 bits (61), Expect = 6.5
 Identities = 16/50 (32%), Positives = 18/50 (36%), Gaps = 8/50 (16%)

Query: 124 GALTPPLW---GFEEREKLMV----FYERASGSRMHAAYFRPGGVHQDIP 166
           G L+ P W       R    V     Y R      +   F PG  HQDIP
Sbjct: 145 GVLSGPDWLRMALSSRRWTHVVWLGVYRRDF-IVKNNIKFEPGLHHQDIP 193


>gnl|CDD|152226 pfam11790, Glyco_hydro_cc, Glycosyl hydrolase catalytic core.  This
           family is probably a glycosyl hydrolase, and is
           conserved in fungi and some Proteobacteria. The pombe
           member is annotated as being from IPR013781.
          Length = 185

 Score = 27.3 bits (61), Expect = 6.8
 Identities = 7/19 (36%), Positives = 12/19 (63%), Gaps = 1/19 (5%)

Query: 54  ETKTFL-QAVPYFDRLDYV 71
           ET+ F+ + +P+ D   YV
Sbjct: 132 ETQDFMNEVLPWLDSQSYV 150


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.322    0.141    0.433 

Gapped
Lambda     K      H
   0.267   0.0630    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,742,499
Number of extensions: 447080
Number of successful extensions: 794
Number of sequences better than 10.0: 1
Number of HSP's gapped: 782
Number of HSP's successfully gapped: 21
Length of query: 396
Length of database: 5,994,473
Length adjustment: 95
Effective length of query: 301
Effective length of database: 3,941,713
Effective search space: 1186455613
Effective search space used: 1186455613
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.3 bits)