RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780855|ref|YP_003065268.1| NADH dehydrogenase subunit D [Candidatus Liberibacter asiaticus str. psy62] (396 letters) >gnl|CDD|180385 PRK06075, PRK06075, NADH dehydrogenase subunit D; Validated. Length = 392 Score = 760 bits (1965), Expect = 0.0 Identities = 269/392 (68%), Positives = 318/392 (81%), Gaps = 2/392 (0%) Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64 + R++T+NFGPQHPAAHGVLRLILELDGE+V R DPHIG LHRGTEKL E +T+LQA+PY Sbjct: 3 EIRNYTLNFGPQHPAAHGVLRLILELDGEVVVRADPHIGYLHRGTEKLAEYRTYLQAIPY 62 Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124 FDRLDYV+PMN EHAY LAVEKLLGIE+P R Q IRVL+ E+ RILSHLL + T A+D+G Sbjct: 63 FDRLDYVSPMNNEHAYCLAVEKLLGIEVPERAQYIRVLFLELNRILSHLLWLGTHALDLG 122 Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184 A+T LWGF EREKL+ YE +G+RMH AY RPGGV +D+P L+EDI + D FP L Sbjct: 123 AMTVFLWGFREREKLLDLYEAVTGARMHHAYIRPGGVRRDLPDGLLEDIRDFLDYFPKRL 182 Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244 +D LLT NRI+KQR V +G V E A GF+G M+R SG AWDLRKSQPYE Y ELD Sbjct: 183 DDYETLLTDNRIWKQRLVGVGVVSKERALALGFTGPMLRASGVAWDLRKSQPYEVYDELD 242 Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304 FD+P+GK+GDCYDRYLVR+ EMR+S++II QC++RL + GPV DPKI PP R +M Sbjct: 243 FDVPVGKNGDCYDRYLVRVEEMRQSLRIIEQCLDRL--RPPPGPVMVDDPKIAPPARLEM 300 Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364 K SME+LIHHFKL TEG+ VP GEVYAAVE+PKGEFGVYL+SDGGNKPYR KIRAP +AH Sbjct: 301 KTSMEALIHHFKLVTEGFRVPAGEVYAAVESPKGEFGVYLVSDGGNKPYRVKIRAPSFAH 360 Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396 LQA++ +C+GH LADV AI+GSLDIVFGEVDR Sbjct: 361 LQALDEMCRGHMLADVVAIIGSLDIVFGEVDR 392 >gnl|CDD|162627 TIGR01962, NuoD, NADH dehydrogenase I, D subunit. This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. Length = 386 Score = 622 bits (1607), Expect = e-179 Identities = 231/387 (59%), Positives = 290/387 (74%), Gaps = 4/387 (1%) Query: 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69 +N GPQHP+ HGVLRLILELDGE V R DPHIG LHRGTEKL E +T+ Q +PY DRLD Sbjct: 4 ILNLGPQHPSTHGVLRLILELDGEYVVRADPHIGYLHRGTEKLAENRTYQQYIPYTDRLD 63 Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129 Y++P + E AY LAVEKLLGIE+P R Q+IRV+ SE+ RI SHLL + T A+D+GA+TP Sbjct: 64 YLSPFSNELAYCLAVEKLLGIEVPRRAQVIRVMLSELNRISSHLLFIGTHALDLGAMTPF 123 Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189 L+ F EREK++ +E +G+RMH+AYFR GGV D+P +E+I + + FP L D Sbjct: 124 LYAFREREKILDLFEAITGARMHSAYFRIGGVALDLPENWLEEIREFLEQFPKRLRDYET 183 Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249 LL NRI+KQR +G V +DA WG +G M+RGSG WD+RKS+PYE Y E DFD+P+ Sbjct: 184 LLNENRIWKQRTQGVGVVSAKDALDWGLTGPMLRGSGIDWDIRKSEPYEGYDEYDFDVPV 243 Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSME 309 G +GDCYDRYL+R++EMRES+KII QC+ ++ GP+ A +PK+ PP + M SME Sbjct: 244 GGNGDCYDRYLLRVLEMRESIKIIEQCLEKM----PPGPIKADNPKLAPPPKERMLTSME 299 Query: 310 SLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAME 369 +LIHHFKL TEG+ VP GEVY +E+PKGE G Y+ISDGG KPYR KIRAP +AHLQA+E Sbjct: 300 ALIHHFKLVTEGFRVPAGEVYVPIESPKGELGFYIISDGGTKPYRLKIRAPSFAHLQALE 359 Query: 370 FLCKGHQLADVSAILGSLDIVFGEVDR 396 +C GH LAD+ AILGS+D V GEVDR Sbjct: 360 AMCVGHYLADLIAILGSIDPVMGEVDR 386 >gnl|CDD|183437 PRK12322, PRK12322, NADH dehydrogenase subunit D; Provisional. Length = 366 Score = 412 bits (1060), Expect = e-115 Identities = 165/392 (42%), Positives = 227/392 (57%), Gaps = 28/392 (7%) Query: 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64 ++ +N GPQHP+ HGV RL+L++DGEI+ P IG LHRGTEKL E+ + Q +PY Sbjct: 3 RTEEMLLNVGPQHPSTHGVFRLVLKIDGEIIVEATPVIGYLHRGTEKLAESLQYTQIIPY 62 Query: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124 DR+DY++ M + Y AVE ++G+E+P R + +RV+ E+GRI SHL+ T +D+G Sbjct: 63 TDRMDYLSAMTNNYVYCHAVETMMGLEVPERAEYLRVIAMELGRIASHLVWWGTYLLDIG 122 Query: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSAL 184 A++P L+ F ERE ++ G+R+ Y R GGV D P +E + + L Sbjct: 123 AVSPFLYAFREREMIINLLNELCGARLTFNYMRIGGVKWDAPDGWIEKVKEFVPYMREQL 182 Query: 185 NDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244 DL+TGN IF R +G E+A + SGV +R +G WDLRK +PY Y D Sbjct: 183 AGYHDLVTGNEIFLNRVKGVGIYSAEEAISYSLSGVNLRCTGVNWDLRKDEPYSIYDRFD 242 Query: 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADM 304 FDIP+G GDC+DRY+ RM E+ +S+KII Q V + K GPV A PKI+ Sbjct: 243 FDIPVGSVGDCWDRYVCRMQEIEQSLKIIEQAVEQF---PKEGPVLAKVPKIIKA----- 294 Query: 305 KRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH 364 P GE Y +E+P+GE G Y+ SDG KPYR K R P + + Sbjct: 295 --------------------PKGEAYVRIESPRGEIGCYIASDGKKKPYRLKFRRPSFYN 334 Query: 365 LQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396 LQ + L KG +A++ AILGS+DIV GEVD Sbjct: 335 LQILPKLLKGENIANLIAILGSIDIVLGEVDG 366 >gnl|CDD|183955 PRK13292, PRK13292, trifunctional NADH dehydrogenase I subunit B/C/D; Provisional. Length = 788 Score = 393 bits (1012), Expect = e-110 Identities = 177/386 (45%), Positives = 242/386 (62%), Gaps = 4/386 (1%) Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70 +N GPQHP HG++R +L+LDGE + +D IG HRG EK+ E + + Q +PY DR+DY Sbjct: 407 LNLGPQHPGTHGIIRFVLKLDGEEIVDMDSDIGYHHRGAEKIGERQHWNQFIPYTDRIDY 466 Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130 +A + AY +VE L GIE+P R IRV+ SE+ RI +HL+ + T A DVGA+TP Sbjct: 467 LAGVQNNLAYVNSVETLCGIEVPDRAIYIRVMLSELFRIANHLVWLGTFAADVGAMTPVF 526 Query: 131 WGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDL 190 + F +REK+ E +G RMH A+FR GGV +D+P E + + FP L + DL Sbjct: 527 YTFTDREKIFDIVEMITGGRMHPAWFRIGGVAEDLPEGWKEAVEAFLRWFPGRLKEYEDL 586 Query: 191 LTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIG 250 LTGN IFK R +G + ++A WG SG +R G AWDLRK PY Y DF++P Sbjct: 587 LTGNPIFKARLKGVGVITRDEAVEWGISGPNLRACGLAWDLRKKMPYGGYDRFDFEVPTA 646 Query: 251 KHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMES 310 + GDCY RYLVRM EMR+S++I+RQ + G + D + V P++ D + +ES Sbjct: 647 EGGDCYARYLVRMEEMRQSLRIVRQAAAGMPGGRWISD----DYRYVLPQKRDTLKDIES 702 Query: 311 LIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEF 370 LIHHF T G P GE YAA+EAPKGE G +++SDG N YR +IR P + H+QA+ Sbjct: 703 LIHHFVNVTRGPAPPKGECYAAIEAPKGENGYFVVSDGLNIAYRMRIRTPSFPHIQALPL 762 Query: 371 LCKGHQLADVSAILGSLDIVFGEVDR 396 L +G +AD AI+GS+D V ++DR Sbjct: 763 LSRGWLVADFLAIIGSIDFVLADLDR 788 >gnl|CDD|183294 PRK11742, PRK11742, bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional. Length = 575 Score = 376 bits (969), Expect = e-105 Identities = 159/390 (40%), Positives = 230/390 (58%), Gaps = 12/390 (3%) Query: 11 INFGPQHPAAHGVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLD 69 +N GP HP+AHG R++L+LDGE IV+ V P IG HRG EK+ E +++ +PY DR+D Sbjct: 194 LNLGPNHPSAHGAFRIVLQLDGEEIVDCV-PDIGYHHRGAEKMGERQSWHSYIPYTDRID 252 Query: 70 YVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129 Y+ E Y LAVEKL GI +P R +IRV+ SE+ RI SHLL + T DVGA+TP Sbjct: 253 YLGGCMNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYIGTFIQDVGAMTPV 312 Query: 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIP---PELVEDIGCWCDSFPSALND 186 + F +R+K+ E +G RMH A+FR GGV D+P L+ + W P L++ Sbjct: 313 FFAFTDRQKIYDVIEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDW---MPKRLDE 369 Query: 187 ISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246 N I K R + ++A WG +G +R +G +D+RK++PY Y DF+ Sbjct: 370 YEKAALRNSILKGRTQGVAAYNAKEALEWGVTGAGLRATGIDFDVRKARPYSGYENFDFE 429 Query: 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKR 306 +P+G +GDCYDR +V++ EMR+S++II QC++ + GP A P PP + + Sbjct: 430 VPVGGNGDCYDRVMVKVEEMRQSLRIIEQCLDNM----PEGPFKADHPLTTPPPKERTLQ 485 Query: 307 SMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366 +E+LI HF + G +P E + +EA KG YL SDG YR +IR P +AHLQ Sbjct: 486 HIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQ 545 Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396 + + +G ++D+ LGS+D V +VDR Sbjct: 546 QIPSVIRGSLVSDLIVYLGSIDFVMSDVDR 575 >gnl|CDD|180969 PRK07415, PRK07415, NAD(P)H-quinone oxidoreductase subunit H; Validated. Length = 394 Score = 348 bits (895), Expect = 1e-96 Identities = 167/390 (42%), Positives = 228/390 (58%), Gaps = 12/390 (3%) Query: 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDY 70 +NFGP HP+ HGVLRLI+ LDGE V +P IG LHRG EK+ E +T + VPY R DY Sbjct: 13 LNFGPHHPSMHGVLRLIVTLDGEDVVDCEPVIGYLHRGMEKIAENRTNVMYVPYVSRWDY 72 Query: 71 VAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130 A M E A EKL I +P R IRV+ E+ RI +HLL + DVGA TP Sbjct: 73 AAGMFNEAITVNAPEKLANIPVPKRASYIRVIMLELNRIANHLLWLGPFLADVGAQTPFF 132 Query: 131 WGFEEREKLMVFYERASGSRM-HAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISD 189 + F ERE + +E A+G R+ + YFR GGV D+P +E +CD F +++ Sbjct: 133 YIFREREMIYDLWEAATGQRLINNNYFRIGGVAADLPYGWLEKCLDFCDYFGPKIDEYEK 192 Query: 190 LLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPI 249 L+T N IF++R +GT+ E+A WG SG M+R SG WDLRK YECY + D+D+ Sbjct: 193 LITNNPIFRRRIEGLGTISREEAINWGLSGPMLRASGVKWDLRKVDHYECYDDFDWDVAW 252 Query: 250 GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRS-M 308 GDC RY VR+ EMRESVKIIRQ + G GP + K + A+ K+S Sbjct: 253 ETEGDCLARYRVRIEEMRESVKIIRQACKGIPG----GPYENLEAK----RMAEGKKSEW 304 Query: 309 ESLIHHF--KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ 366 + + K + +P GE+Y +E+ KGE G+++ + P+R KIRA + +LQ Sbjct: 305 NGFDYQYVAKKVAPTFKIPNGELYVRLESGKGELGIFIQGNNDVTPWRWKIRAADFNNLQ 364 Query: 367 AMEFLCKGHQLADVSAILGSLDIVFGEVDR 396 + L KG ++AD+ AILGS+D++ G VDR Sbjct: 365 ILPHLLKGAKVADIMAILGSIDVIMGSVDR 394 >gnl|CDD|163204 TIGR03295, frhA, coenzyme F420 hydrogenase, subunit alpha. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein is a member of the Nickel-dependent hydrogenase superfamily represented by Pfam model, pfam00374. Length = 411 Score = 37.9 bits (88), Expect = 0.005 Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 1/94 (1%) Query: 22 GVLRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAY 80 G +L+LE+D E IVE+ D RG EKL+ KT A R+ + P+ A Sbjct: 15 GHAKLVLEVDDEGIVEKGDYLSITPVRGFEKLLVGKTAEFAPIIVSRICGICPIAHTLAS 74 Query: 81 ALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLL 114 A+E + E+P G L+R L R+ SH L Sbjct: 75 VEAIEDSIDCEVPKDGLLLRELTGCANRLHSHAL 108 >gnl|CDD|178330 PLN02729, PLN02729, PSII-Q subunit. Length = 220 Score = 32.1 bits (73), Expect = 0.25 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 11/68 (16%) Query: 167 PELVEDIGCWCDS---FPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIR 223 L ED G W D PS N I + TG R F ++ + + + G G M R Sbjct: 71 VSLAEDNGFWLDGPLPVPSVDNKIVNEKTGTRSFLKKGIYMADI--------GTKGRMYR 122 Query: 224 GSGAAWDL 231 A+DL Sbjct: 123 VKKYAFDL 130 >gnl|CDD|184691 PRK14464, PRK14464, ribosomal RNA large subunit methyltransferase N; Provisional. Length = 344 Score = 32.0 bits (73), Expect = 0.31 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 6/34 (17%) Query: 16 QHPAAHGVLRLILEL-DGEIVERVDPHIGLLHRG 48 +HP G RL++EL DG++VE V LL R Sbjct: 68 EHPGEDGSARLLVELADGQMVESV-----LLPRD 96 >gnl|CDD|179078 PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed. Length = 791 Score = 29.4 bits (67), Expect = 1.6 Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 10/49 (20%) Query: 84 VEKLLGIEIPIRGQLIRVLYSEIGRILSHL-LNVTTQAMDVGALTPPLW 131 + +LLG EI EI IL L VT D +T P W Sbjct: 410 INRLLGTEISD---------EEIVDILKRLGFEVTEVDGDGLTVTVPSW 449 >gnl|CDD|182181 PRK09983, pflD, putative formate acetyltransferase 2; Provisional. Length = 765 Score = 29.4 bits (66), Expect = 1.8 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%) Query: 318 YTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKP 352 YT HVP+G V A P G F ++DGG P Sbjct: 617 YTVSAHVPLGSVVGA--TPDGRFAGEQLADGGLSP 649 >gnl|CDD|119240 pfam10720, DUF2515, Protein of unknown function (DUF2515). This family is conserved in Firmicutes. Several members are annotated as YppC. The function is not known. Length = 306 Score = 28.4 bits (64), Expect = 3.0 Identities = 13/23 (56%), Positives = 17/23 (73%) Query: 124 GALTPPLWGFEEREKLMVFYERA 146 G+L P L EER++L +FYERA Sbjct: 55 GSLYPSLLSEEERKRLFLFYERA 77 >gnl|CDD|181030 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated. Length = 859 Score = 28.2 bits (64), Expect = 3.7 Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 14/49 (28%) Query: 332 AVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADV 380 A+ G FG Y+ G+KP R L KG+ V Sbjct: 654 AMVLRSGRFGPYVQEGEGDKPRR--------LS------LPKGNNPECV 688 >gnl|CDD|147957 pfam06080, DUF938, Protein of unknown function (DUF938). This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown. Length = 201 Score = 27.4 bits (61), Expect = 6.2 Identities = 14/45 (31%), Positives = 16/45 (35%), Gaps = 5/45 (11%) Query: 144 ERASGSRMHAAYFRPG-----GVHQDIPPELVEDIGCWCDSFPSA 183 E ASG+ HA +F P D P L I W D Sbjct: 31 EIASGTGQHAVFFAPLLPNLTWQPSDPDPNLRGSIAAWADQQGLR 75 >gnl|CDD|182223 PRK10073, PRK10073, putative glycosyl transferase; Provisional. Length = 328 Score = 27.3 bits (61), Expect = 6.5 Identities = 16/50 (32%), Positives = 18/50 (36%), Gaps = 8/50 (16%) Query: 124 GALTPPLW---GFEEREKLMV----FYERASGSRMHAAYFRPGGVHQDIP 166 G L+ P W R V Y R + F PG HQDIP Sbjct: 145 GVLSGPDWLRMALSSRRWTHVVWLGVYRRDF-IVKNNIKFEPGLHHQDIP 193 >gnl|CDD|152226 pfam11790, Glyco_hydro_cc, Glycosyl hydrolase catalytic core. This family is probably a glycosyl hydrolase, and is conserved in fungi and some Proteobacteria. The pombe member is annotated as being from IPR013781. Length = 185 Score = 27.3 bits (61), Expect = 6.8 Identities = 7/19 (36%), Positives = 12/19 (63%), Gaps = 1/19 (5%) Query: 54 ETKTFL-QAVPYFDRLDYV 71 ET+ F+ + +P+ D YV Sbjct: 132 ETQDFMNEVLPWLDSQSYV 150 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.322 0.141 0.433 Gapped Lambda K H 0.267 0.0630 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 6,742,499 Number of extensions: 447080 Number of successful extensions: 794 Number of sequences better than 10.0: 1 Number of HSP's gapped: 782 Number of HSP's successfully gapped: 21 Length of query: 396 Length of database: 5,994,473 Length adjustment: 95 Effective length of query: 301 Effective length of database: 3,941,713 Effective search space: 1186455613 Effective search space used: 1186455613 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 58 (26.3 bits)