RPSBLAST alignment of GI: 254780855 and protein with PDBid: 1e3d

>1e3d_B [NIFE] hydrogenase large subunit; molecular modelling, electron transfer; HET: FSX; 1.8A {Desulfovibrio desulfuricans} SCOP: e.18.1.1 Length = 542
 Score = 77.1 bits (189), Expect = 6e-15
 Identities = 13/164 (7%), Positives = 37/164 (22%), Gaps = 37/164 (22%)

Query: 225 SGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKN 284
                + +  +P         ++          R   R ++     + +   +N      
Sbjct: 384 VAYGHNHKTIKPTIDAVLGKLNLGPEALFSTLGRTAARGIQTLVIAQQMENWLNEY---- 439

Query: 285 KVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
                                    +++   ++  +             +  +G    ++
Sbjct: 440 -----------------------ENNIVKDKQIVEDYAVPTSARGVGFADVSRGGLSHWM 476

Query: 345 ISDGGNKPYRCKIRAP---------GYAHLQAMEFLCKGHQLAD 379
             + G K    ++  P               A E    G  +AD
Sbjct: 477 TIEDG-KIDNFQLVVPTTWNLGPRDDKGVPSAAEAALVGTPVAD 519