RPSBLAST alignment of GI: 254780855 and protein with PDBid: 1e3d
>1e3d_B [NIFE] hydrogenase large subunit; molecular modelling, electron transfer; HET: FSX; 1.8A {Desulfovibrio desulfuricans} SCOP: e.18.1.1 Length = 542
Score = 77.1 bits (189), Expect = 6e-15
Identities = 13/164 (7%), Positives = 37/164 (22%), Gaps = 37/164 (22%)
Query: 225 SGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKN 284
+ + +P ++ R R ++ + + +N
Sbjct: 384 VAYGHNHKTIKPTIDAVLGKLNLGPEALFSTLGRTAARGIQTLVIAQQMENWLNEY---- 439
Query: 285 KVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYL 344
+++ ++ + + +G ++
Sbjct: 440 -----------------------ENNIVKDKQIVEDYAVPTSARGVGFADVSRGGLSHWM 476
Query: 345 ISDGGNKPYRCKIRAP---------GYAHLQAMEFLCKGHQLAD 379
+ G K ++ P A E G +AD
Sbjct: 477 TIEDG-KIDNFQLVVPTTWNLGPRDDKGVPSAAEAALVGTPVAD 519