RPSBLAST alignment of GI: 254780855 and protein with PDBid: 1yq9

>1yq9_H Periplasmic [NIFE] hydrogenase large subunit; oxidoreductase; 2.35A {Desulfovibrio gigas} SCOP: e.18.1.1 PDB: 2frv_L 1frv_B Length = 536
 Score = 72.6 bits (177), Expect = 2e-13
 Identities = 41/305 (13%), Positives = 76/305 (24%), Gaps = 49/305 (16%)

Query: 95  RGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAA 154
           R    R LY E+   +  +      A  V        G  +    +   E  +      +
Sbjct: 238 RIAEFRKLYKEVREFIEQVYITDLLA--VAGFYKNWAGIGKTSNFLTCGEFPTDEYDLNS 295

Query: 155 YFRPGGV--------HQDIPPELV-EDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIG 205
            + P GV          D  P+L+ E +         A +    +               
Sbjct: 296 RYTPQGVIWGNDLSKVDDFNPDLIEEHVKYSWYEGADAHHPYKGVTKPKWTEFHGEDRYS 355

Query: 206 TVK-LEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL-DFDIPIGKHGDCYDRYLVRM 263
            +K           G +     A     +         L    +          R   R 
Sbjct: 356 WMKAPRYKGEAFEVGPLASVLVAYAKKHEPTVKAVDLVLKTLGVGPEALFSTLGRTAARG 415

Query: 264 MEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYH 323
           ++   + + +   +++L    K G          P +                       
Sbjct: 416 IQCLTAAQEVEVWLDKLEANVKAGKDDLYTDWQYPTE----------------------- 452

Query: 324 VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP---------GYAHLQAMEFLCKG 374
               +    V AP+G    +++  GG K    ++  P             L A+E    G
Sbjct: 453 ---SQGVGFVNAPRGMLSHWIVQRGG-KIENFQLVVPSTWNLGPRCAEGKLSAVEQALIG 508

Query: 375 HQLAD 379
             +AD
Sbjct: 509 TPIAD 513