RPSBLAST alignment of GI: 254780855 and protein with PDBid: 1yq9
>1yq9_H Periplasmic [NIFE] hydrogenase large subunit; oxidoreductase; 2.35A {Desulfovibrio gigas} SCOP: e.18.1.1 PDB: 2frv_L 1frv_B Length = 536
Score = 72.6 bits (177), Expect = 2e-13
Identities = 41/305 (13%), Positives = 76/305 (24%), Gaps = 49/305 (16%)
Query: 95 RGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAA 154
R R LY E+ + + A V G + + E + +
Sbjct: 238 RIAEFRKLYKEVREFIEQVYITDLLA--VAGFYKNWAGIGKTSNFLTCGEFPTDEYDLNS 295
Query: 155 YFRPGGV--------HQDIPPELV-EDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIG 205
+ P GV D P+L+ E + A + +
Sbjct: 296 RYTPQGVIWGNDLSKVDDFNPDLIEEHVKYSWYEGADAHHPYKGVTKPKWTEFHGEDRYS 355
Query: 206 TVK-LEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL-DFDIPIGKHGDCYDRYLVRM 263
+K G + A + L + R R
Sbjct: 356 WMKAPRYKGEAFEVGPLASVLVAYAKKHEPTVKAVDLVLKTLGVGPEALFSTLGRTAARG 415
Query: 264 MEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYH 323
++ + + + +++L K G P +
Sbjct: 416 IQCLTAAQEVEVWLDKLEANVKAGKDDLYTDWQYPTE----------------------- 452
Query: 324 VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP---------GYAHLQAMEFLCKG 374
+ V AP+G +++ GG K ++ P L A+E G
Sbjct: 453 ---SQGVGFVNAPRGMLSHWIVQRGG-KIENFQLVVPSTWNLGPRCAEGKLSAVEQALIG 508
Query: 375 HQLAD 379
+AD
Sbjct: 509 TPIAD 513