RPSBLAST alignment of GI: 254780855 and protein with PDBid: 1yqw
>1yqw_Q Periplasmic [NIFE] hydrogenase large subunit; NI-Fe hydrogenase unready state, oxidoreductase; 1.83A {Desulfovibrio fructosovorans} PDB: 1yrq_H 3h3x_Q 3cus_Q 3cur_H 1frf_L Length = 549
Score = 82.2 bits (202), Expect = 2e-16
Identities = 22/191 (11%), Positives = 42/191 (21%), Gaps = 38/191 (19%)
Query: 210 EDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD-FDIPIGKHGDCYDRYLVRMMEMRE 268
G + R A + L +P R R +E
Sbjct: 375 RYKGKAMEVGPLARTFIAYAKGQPDFKKVVDMVLGKLSVPATALHSTLGRTAARGIETAI 434
Query: 269 SVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGE 328
+ + + + +S L + +
Sbjct: 435 VCANMEKWIKEM---------------------------ADSGAKDNTLCAKWEMPEESK 467
Query: 329 VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP---------GYAHLQAMEFLCKGHQLAD 379
+AP+G ++ G K ++ P +E G +AD
Sbjct: 468 GVGLADAPRGALSHWIRIKGK-KIDNFQLVVPATWNLGPRGAQGDKSPVEEALIGTPIAD 526
Query: 380 VSAILGSLDIV 390
+ L V
Sbjct: 527 PKRPVEILRTV 537