RPSBLAST alignment of GI: 254780855 and protein with PDBid: 3i9v

>3i9v_4 NADH-quinone oxidoreductase subunit 4; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_4* 3iam_4* 3ias_4* Length = 409

 Score =  391 bits (1004), Expect = e-109
 Identities = 180/395 (45%), Positives = 257/395 (65%), Gaps = 4/395 (1%)

Query: 2   DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
            + ++   T+N GPQHP+ HGVLRL++ L GE V  V PHIG LH G EK +E +T+LQ 
Sbjct: 19  KELRTEVMTLNVGPQHPSTHGVLRLMVTLSGEEVLEVVPHIGYLHTGFEKTMEHRTYLQN 78

Query: 62  VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
           + Y  R+DY+     + AYALAVEKLLG  +P R + IRV+ +E+ R+ SHL+ + T  +
Sbjct: 79  ITYTPRMDYLHSFAHDLAYALAVEKLLGAVVPPRAETIRVILNELSRLASHLVFLGTGLL 138

Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
           D+GALTP  + F ERE ++  +E  +G R H  Y R GGV +D+P E V ++    +  P
Sbjct: 139 DLGALTPFFYAFRERETILDLFEWVTGQRFHHNYIRIGGVKEDLPEEFVPELKKLLEVLP 198

Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
             +++   L   + IF +R   +G +  E A   G +G  +R SG  +D+RK+ PY  Y 
Sbjct: 199 HRIDEYEALFAESPIFYERARGVGVIPPEVAIDLGLTGGSLRASGVNYDVRKAYPYSGYE 258

Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
              FD+P+G+ GD +DR LVR+ EMRESVKII+Q + RL    + GPV   +P+I PP R
Sbjct: 259 TYTFDVPLGERGDVFDRMLVRIREMRESVKIIKQALERL----EPGPVRDPNPQITPPPR 314

Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
             ++ SME++I+HFK YTEG+H P GEVY   E+ +GE G Y++SDGG+ PYR K+RAP 
Sbjct: 315 HLLETSMEAVIYHFKHYTEGFHPPKGEVYVPTESARGELGYYIVSDGGSMPYRVKVRAPS 374

Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
           + +LQ++ + CKG Q+ D+ AI+ SLD V G+VDR
Sbjct: 375 FVNLQSLPYACKGEQVPDMVAIIASLDPVMGDVDR 409