HHsearch alignment for GI: 254780856 and conserved domain: cd03081
>cd03081 TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, NAD-dependent formate dehydrogenase (FDH) gamma subunit; composed of proteins similar to the gamma subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD+ to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH gamma subunit is closely related to NuoE, which is part of a multisubunit complex (Nuo) catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE. Similarly, the FDH gamma subunit is hypothesized to be involved in an electron transport chain involving other FDH subunits, upon the oxidat
Probab=99.94 E-value=8e-27 Score=201.80 Aligned_cols=80 Identities=23% Similarity=0.519 Sum_probs=78.6
Q ss_pred CEEEEECCCHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEECCHHHCCCCHHHHHHHHHHH
Q ss_conf 06999618835877089248999998827564751778818999532456677886799858341458898999999999
Q gi|254780856|r 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 (218)
Q Consensus 93 k~~I~VC~~~~C~l~G~~~l~~~l~~~Lgi~~gett~DG~ftLe~v~CLG~C~~AP~~~Vn~~~y~~lt~e~~~~il~~L 172 (218)
T Consensus 1 k~~i~VC~~~~C~~~G~~~l~~~l~~~Lgi~~gett~DG~ftL~~v~ClG~C~~aP~~~Vn~~~y~~lt~ek~~~il~~L 80 (80)
T cd03081 1 RHVLKLCRAEACQAMGAEALAAHIKARLGIDFHETTADGSVTLEPVYCLGLCACSPAAMIDGEVHGRVDPEKFDALLAEL 80 (80)
T ss_pred CCEEEECCCHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCEECCCCCCCEEEECCEEECCCCHHHHHHHHHCC
T ss_conf 96999669867775798999999999868899887989828998715506479999799999985688999999999709